BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000379
         (1604 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|296081735|emb|CBI20740.3| unnamed protein product [Vitis vinifera]
          Length = 1688

 Score = 2117 bits (5485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1093/1689 (64%), Positives = 1279/1689 (75%), Gaps = 91/1689 (5%)

Query: 1    MHSP--LNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAK 58
            MHSP   N LKRSF E++     D     +      PSSS++S    PR YQ KVFEVAK
Sbjct: 1    MHSPELANPLKRSFDEMNLKRDAD--DDSNPPPSPLPSSSSSSKELSPRSYQWKVFEVAK 58

Query: 59   RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ--------QY 110
            RRNTIAVL+TG GKTMIA+MLI++I QA+K++G K  IIFLAPTVHLV+Q        Q+
Sbjct: 59   RRNTIAVLDTGTGKTMIALMLIREIGQAVKADGRKLFIIFLAPTVHLVNQACFFFIFSQF 118

Query: 111  DVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
             VI+  T FEVEEYYGAKGVDEW ++ W+KEI+++DVLVMTPQILLDALRKAFLSL+ VC
Sbjct: 119  KVIKDSTGFEVEEYYGAKGVDEWSAKSWEKEISEHDVLVMTPQILLDALRKAFLSLETVC 178

Query: 171  FIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELE 230
             +++DECH ATGNHPYTKIMKEFYHKS +KPK+FGMTASPV+RKGVSS+MDCE QISELE
Sbjct: 179  LMIVDECHRATGNHPYTKIMKEFYHKSVDKPKIFGMTASPVIRKGVSSSMDCENQISELE 238

Query: 231  STLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQG 290
            S LD Q++TIED+TE+EVF+PSAKE  RFYD S+F   DLK KL+ SWSKFD  L  LQG
Sbjct: 239  SILDCQIYTIEDRTELEVFIPSAKEINRFYDASQFHNLDLKAKLKSSWSKFDNLLLNLQG 298

Query: 291  SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350
            S +  YKDMDDK K LRK+LS+ HAKILYCLD+LGLICAYEAVK+C+E V  AQEE E Y
Sbjct: 299  SPMTQYKDMDDKLKALRKRLSNDHAKILYCLDDLGLICAYEAVKVCIENVSNAQEEFEFY 358

Query: 351  RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFG 410
            RQSS QCK FL+EVL +IG  LP  D  +L+   D  KAVD GYI+ KLHELLQLF SFG
Sbjct: 359  RQSSSQCKCFLQEVLGIIGGYLPHGDGNYLNSESDILKAVDKGYITPKLHELLQLFQSFG 418

Query: 411  KSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESF 470
             + +VLC+IFVERII AKV+ERF+KK+ +L+H TV+YLTGS +SVDAL PK Q+E LESF
Sbjct: 419  VARKVLCLIFVERIITAKVIERFIKKIIYLSHFTVSYLTGSNSSVDALAPKAQRETLESF 478

Query: 471  RGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGN 530
            R GKVNLLFATDV+EEG+HVPNCS VIRFDLPKTV SY+QSRGRARQ +SQFI+MLERGN
Sbjct: 479  RSGKVNLLFATDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQSDSQFIIMLERGN 538

Query: 531  LKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLI 590
             +QR++LFDIIRSE S+TDTA +RDP+   LKA T  +  SY V+STGASVT DSSV+LI
Sbjct: 539  TEQRDQLFDIIRSEYSMTDTATNRDPDGYTLKAYTIEEMDSYFVDSTGASVTADSSVSLI 598

Query: 591  HRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCL 650
            HRYCE LP DKY+TPKP F +   E  YEC+LTLP NA FQTI+GP ++N +LSKQLVCL
Sbjct: 599  HRYCEKLPGDKYFTPKPFFHFTYLEGMYECKLTLPPNAAFQTIIGPGNKNSHLSKQLVCL 658

Query: 651  EACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRW 710
            EAC+KLHQ+GAL+DHLLP VEEPSEN++I K   S  GAGTTKRKELHGTT   ALSG W
Sbjct: 659  EACKKLHQMGALDDHLLPYVEEPSENDIIVKSKGSAAGAGTTKRKELHGTTQTCALSGTW 718

Query: 711  GEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSS 769
            G+K  G I  AYK +F+C+IV E+YSGFVLLIES+LD+DVGN E+ELYL+SK V+ +VSS
Sbjct: 719  GDKIDGAIFQAYKIDFSCNIVNELYSGFVLLIESKLDDDVGNIEMELYLISKFVRTSVSS 778

Query: 770  SGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG-SREFFLKRETNSLWSPSYMYLL 828
             GQV LDA+Q+ KA  F ELFFN LFG+LF+ SKSSG  REF L  +  SLWS S MYLL
Sbjct: 779  CGQVSLDAEQVMKAMRFHELFFNSLFGRLFIGSKSSGVRREFLLNTQQKSLWSSSNMYLL 838

Query: 829  LPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTG 888
            LP+E  N   D SWRINW GIN CASVVEF++++S L     N++ GN SPC T   +T 
Sbjct: 839  LPIESSNIPSDESWRINWPGINSCASVVEFLEKRSQLSTGNMNDDTGNPSPCSTGLVETE 898

Query: 889  CHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSK--- 945
            C     +HLAN SV   NLK+MVVLAIHTGRIYSI+++V ++SAESPFDG+ D +S    
Sbjct: 899  CKSISTVHLANNSVHVNNLKNMVVLAIHTGRIYSILDVVIDTSAESPFDGSADVNSSNYT 958

Query: 946  TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHV 1005
            TF  YF+ KYGIVL++PGQPLL LKQSHN HNLLVNFND GG    +   M  +K Q HV
Sbjct: 959  TFAEYFNNKYGIVLMYPGQPLLLLKQSHNAHNLLVNFNDEGGEALQTGQKMLNEKAQTHV 1018

Query: 1006 HMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEA 1065
            HMPPELLV ++VPI+V+KS YLLPS++ RLESLMLASQLREEI   +    I SSLILEA
Sbjct: 1019 HMPPELLVSIEVPITVLKSSYLLPSLIHRLESLMLASQLREEI-AFTTGSQISSSLILEA 1077

Query: 1066 LTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG 1125
            +TTL C ESFSMERLELLGDSVLKYAVSCHLFL YPKKHEGQLSARRSW VCNSTLHKLG
Sbjct: 1078 ITTLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVCNSTLHKLG 1137

Query: 1126 TDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPC 1185
            TDR LQGYIRD AFDPRRWVAPGQ S+RPVPC CGVD LEVPLDGKF T+DTK+VVGK C
Sbjct: 1138 TDRSLQGYIRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQTEDTKIVVGKSC 1197

Query: 1186 DMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLR 1245
            D GHRWMGSKTIADC EALIGAYYVGGGL AAL++MKW GID +LE SLVD+ I  ASLR
Sbjct: 1198 DRGHRWMGSKTIADCVEALIGAYYVGGGLNAALHLMKWFGIDVELEPSLVDEAIATASLR 1257

Query: 1246 SYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ--------------- 1287
            +Y+P+ NEI+ +ESKIGYEF+VK LL EAITHA+ QE    YCYQ               
Sbjct: 1258 TYIPKANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLIT 1317

Query: 1288 -----------------------------------NLYKHLQHCSTLLLSQITEYVKSFP 1312
                                               NL +HLQHCS LLL QI EY K   
Sbjct: 1318 WHLYQSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLS 1377

Query: 1313 KPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP 1372
               +  +   S K PKALGDL+ESI GA+LIDTKLNL+EVWRIFKP+LSPIVTPDKLELP
Sbjct: 1378 GSDDVPNPLQSTKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLELP 1437

Query: 1373 PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQL 1432
            PLREL ELCDSLGYF+KE CT KGE+VHAELRLQ+ DVLLVGEG  R++KAAKG+AA+QL
Sbjct: 1438 PLRELNELCDSLGYFIKEKCTNKGELVHAELRLQMIDVLLVGEGCGRNKKAAKGQAAAQL 1497

Query: 1433 LKKLE--------VCEKRISKGA------SNTGKLGDDCRQTTKEDLPEPPSC-KRQKGT 1477
            LK LE           KR  +GA      S+    GD C Q+  ED  E     K+QK T
Sbjct: 1498 LKNLEKRGISYSRSNSKRRKQGADLVGVSSSLNMGGDACGQSNNEDSSELIKFHKKQKTT 1557

Query: 1478 EAAI----PAGDSCKKAYCM-TVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTE 1532
               +       ++C +  C   + TPV+  INMKKGGPR+SL++LCK + WPMP+FE+ E
Sbjct: 1558 GMQLCTRTSIANNCLENACKPKLDTPVIKSINMKKGGPRSSLYELCKRLQWPMPSFESKE 1617

Query: 1533 SKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHE 1592
             +SR  ++F EG E+R GF+SF+S I+LHIP  G +EC GD RADKKSS DSAAL+MLHE
Sbjct: 1618 QRSRFPIIFGEGSERREGFNSFISSISLHIPNCGVMECRGDHRADKKSSLDSAALVMLHE 1677

Query: 1593 LERQGKIII 1601
            L+R+GK+II
Sbjct: 1678 LQRRGKLII 1686


>gi|359475987|ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a-like [Vitis vinifera]
          Length = 1648

 Score = 2109 bits (5465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1083/1661 (65%), Positives = 1265/1661 (76%), Gaps = 75/1661 (4%)

Query: 1    MHSP--LNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAK 58
            MHSP   N LKRSF E++     D     +      PSSS++S    PR YQ KVFEVAK
Sbjct: 1    MHSPELANPLKRSFDEMNLKRDAD--DDSNPPPSPLPSSSSSSKELSPRSYQWKVFEVAK 58

Query: 59   RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118
            RRNTIAVL+TG GKTMIA+MLI++I QA+K++G K  IIFLAPTVHLV+QQ+ VI+  T 
Sbjct: 59   RRNTIAVLDTGTGKTMIALMLIREIGQAVKADGRKLFIIFLAPTVHLVNQQFKVIKDSTG 118

Query: 119  FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECH 178
            FEVEEYYGAKGVDEW ++ W+KEI+++DVLVMTPQILLDALRKAFLSL+ VC +++DECH
Sbjct: 119  FEVEEYYGAKGVDEWSAKSWEKEISEHDVLVMTPQILLDALRKAFLSLETVCLMIVDECH 178

Query: 179  HATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF 238
             ATGNHPYTKIMKEFYHKS +KPK+FGMTASPV+RKGVSS+MDCE QISELES LD Q++
Sbjct: 179  RATGNHPYTKIMKEFYHKSVDKPKIFGMTASPVIRKGVSSSMDCENQISELESILDCQIY 238

Query: 239  TIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKD 298
            TIED+TE+EVF+PSAKE  RFYD S+F   DLK KL+ SWSKFD  L  LQGS +  YKD
Sbjct: 239  TIEDRTELEVFIPSAKEINRFYDASQFHNLDLKAKLKSSWSKFDNLLLNLQGSPMTQYKD 298

Query: 299  MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358
            MDDK K LRK+LS+ HAKILYCLD+LGLICAYEAVK+C+E V  AQEE E YRQSS QCK
Sbjct: 299  MDDKLKALRKRLSNDHAKILYCLDDLGLICAYEAVKVCIENVSNAQEEFEFYRQSSSQCK 358

Query: 359  YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCI 418
             FL+EVL +IG  LP  D  +L+   D  KAVD GYI+ KLHELLQLF SFG + +VLC+
Sbjct: 359  CFLQEVLGIIGGYLPHGDGNYLNSESDILKAVDKGYITPKLHELLQLFQSFGVARKVLCL 418

Query: 419  IFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLL 478
            IFVERII AKV+ERF+KK+ +L+H TV+YLTGS +SVDAL PK Q+E LESFR GKVNLL
Sbjct: 419  IFVERIITAKVIERFIKKIIYLSHFTVSYLTGSNSSVDALAPKAQRETLESFRSGKVNLL 478

Query: 479  FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF 538
            FATDV+EEG+HVPNCS VIRFDLPKTV SY+QSRGRARQ +SQFI+MLERGN +QR++LF
Sbjct: 479  FATDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQSDSQFIIMLERGNTEQRDQLF 538

Query: 539  DIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLP 598
            DIIRSE S+TDTA +RDP+   LKA T  +  SY V+STGASVT DSSV+LIHRYCE LP
Sbjct: 539  DIIRSEYSMTDTATNRDPDGYTLKAYTIEEMDSYFVDSTGASVTADSSVSLIHRYCEKLP 598

Query: 599  SDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQ 658
             DKY+TPKP F +   E  YEC+LTLP NA FQTI+GP ++N +LSKQLVCLEAC+KLHQ
Sbjct: 599  GDKYFTPKPFFHFTYLEGMYECKLTLPPNAAFQTIIGPGNKNSHLSKQLVCLEACKKLHQ 658

Query: 659  VGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKC-GVI 717
            +GAL+DHLLP VEEPSEN++I K   S  GAGTTKRKELHGTT   ALSG WG+K  G I
Sbjct: 659  MGALDDHLLPYVEEPSENDIIVKSKGSAAGAGTTKRKELHGTTQTCALSGTWGDKIDGAI 718

Query: 718  LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDA 777
              AYK +F+C+IV E+YSGFVLLIES+LD+DVGN E+ELYL+SK V+ +VSS GQV LDA
Sbjct: 719  FQAYKIDFSCNIVNELYSGFVLLIESKLDDDVGNIEMELYLISKFVRTSVSSCGQVSLDA 778

Query: 778  DQMSKAKCFQELFFNGLFGKLFVKSKSSG-SREFFLKRETNSLWSPSYMYLLLPLEIVNT 836
            +Q+ KA  F ELFFN LFG+LF+ SKSSG  REF L  +  SLWS S MYLLLP+E  N 
Sbjct: 779  EQVMKAMRFHELFFNSLFGRLFIGSKSSGVRREFLLNTQQKSLWSSSNMYLLLPIESSNI 838

Query: 837  FGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIH 896
              D SWRINW GIN CASVVEF++++S L     N++ GN SPC T   +T C     +H
Sbjct: 839  PSDESWRINWPGINSCASVVEFLEKRSQLSTGNMNDDTGNPSPCSTGLVETECKSISTVH 898

Query: 897  LANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSK---TFVNYFSE 953
            LAN SV   NLK+MVVLAIHTGRIYSI+++V ++SAESPFDG+ D +S    TF  YF+ 
Sbjct: 899  LANNSVHVNNLKNMVVLAIHTGRIYSILDVVIDTSAESPFDGSADVNSSNYTTFAEYFNN 958

Query: 954  KYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLV 1013
            KYGIVL++PGQPLL LKQSHN HNLLVNFND      G K  M  +K Q HVHMPPELLV
Sbjct: 959  KYGIVLMYPGQPLLLLKQSHNAHNLLVNFNDEDALQTGQK--MLNEKAQTHVHMPPELLV 1016

Query: 1014 RVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCE 1073
             ++VPI+V+KS YLLPS++ RLESLMLASQLREEI   +    I SSLILEA+TTL C E
Sbjct: 1017 SIEVPITVLKSSYLLPSLIHRLESLMLASQLREEI-AFTTGSQISSSLILEAITTLRCSE 1075

Query: 1074 SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGY 1133
            SFSMERLELLGDSVLKYAVSCHLFL YPKKHEGQLSARRSW VCNSTLHKLGTDR LQGY
Sbjct: 1076 SFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVCNSTLHKLGTDRSLQGY 1135

Query: 1134 IRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMG 1193
            IRD AFDPRRWVAPGQ S+RPVPC CGVD LEVPLDGKF T+DTK+VVGK CD GHRWMG
Sbjct: 1136 IRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQTEDTKIVVGKSCDRGHRWMG 1195

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1253
            SKTIADC EALIGAYYVGGGL AAL++MKW GID +LE SLVD+ I  ASLR+Y+P+ NE
Sbjct: 1196 SKTIADCVEALIGAYYVGGGLNAALHLMKWFGIDVELEPSLVDEAIATASLRTYIPKANE 1255

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ----------------------- 1287
            I+ +ESKIGYEF+VK LL EAITHA+ QE    YCYQ                       
Sbjct: 1256 IEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLYQSHR 1315

Query: 1288 ---------------------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDS 1320
                                       NL +HLQHCS LLL QI EY K      +  + 
Sbjct: 1316 DIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDDVPNP 1375

Query: 1321 GPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIEL 1380
              S K PKALGDL+ESI GA+LIDTKLNL+EVWRIFKP+LSPIVTPDKLELPPLREL EL
Sbjct: 1376 LQSTKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLELPPLRELNEL 1435

Query: 1381 CDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCE 1440
            CDSLGYF+KE CT KGE+VHAELRLQ+ DVLLVGEG  R++KAAKG+AA+QLLK LE  +
Sbjct: 1436 CDSLGYFIKEKCTNKGELVHAELRLQMIDVLLVGEGCGRNKKAAKGQAAAQLLKNLE--K 1493

Query: 1441 KRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVV 1500
            + IS   SN+       R+    DL    S     G        +   + Y       V+
Sbjct: 1494 RGISYSRSNSK------RRKQGADLVGVSSSLNMGGDACGQSNNEDSSENYDFVFA--VI 1545

Query: 1501 APINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITL 1560
              INMKKGGPR+SL++LCK + WPMP+FE+ E +SR  ++F EG E+R GF+SF+S I+L
Sbjct: 1546 KSINMKKGGPRSSLYELCKRLQWPMPSFESKEQRSRFPIIFGEGSERREGFNSFISSISL 1605

Query: 1561 HIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1601
            HIP  G +EC GD RADKKSS DSAAL+MLHEL+R+GK+II
Sbjct: 1606 HIPNCGVMECRGDHRADKKSSLDSAALVMLHELQRRGKLII 1646


>gi|330370549|gb|AEC12444.1| ribonuclease III family protein DCL3 [Gossypium hirsutum]
          Length = 1655

 Score = 2044 bits (5295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1049/1655 (63%), Positives = 1244/1655 (75%), Gaps = 95/1655 (5%)

Query: 33   DGPSSSTNSINFIPR--------------------IYQLKVFEVAKRRNTIAVLETGAGK 72
            + PSSS+   +F PR                     YQL+V+EVAKRRN IA+L+TG GK
Sbjct: 12   EDPSSSSKPKDFNPRGFALFSFSFLSVVVICVILSFYQLQVYEVAKRRNIIALLDTGVGK 71

Query: 73   TMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDE 132
            TMIAVMLIKD  QAI+S   KKLIIFLAPTVHLV+Q   +IR   + EVE+YYGAKGVDE
Sbjct: 72   TMIAVMLIKDFGQAIESTESKKLIIFLAPTVHLVNQVCFLIRESLNLEVEQYYGAKGVDE 131

Query: 133  WDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKE 192
            W   CW+KE  ++DVLVMTPQILLDALRKAFLSLD+V  ++IDECH ATGNHPY KIMKE
Sbjct: 132  WTLDCWEKETKEHDVLVMTPQILLDALRKAFLSLDMVSLMIIDECHRATGNHPYAKIMKE 191

Query: 193  FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPS 252
            FYHKS+NKPK+FGMTASPVV KGV S+ +C+GQ+SELE  LDS ++TIED+TEME  VPS
Sbjct: 192  FYHKSNNKPKIFGMTASPVVSKGVLSSNNCDGQMSELECVLDSLIYTIEDRTEMEACVPS 251

Query: 253  AKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSD 312
            AKESCRF+D ++F   DLK K+E SW K D SLS LQ S    +KDMDDK K LRK+LS+
Sbjct: 252  AKESCRFFDPAQFSSLDLKAKVEASWLKTDGSLSNLQSSLQTSHKDMDDKLKNLRKRLSN 311

Query: 313  YHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL 372
             HAK+L+CLD LGLICAYEAV ICLE +L   EE + YR+S LQ K FLEEV   IG +L
Sbjct: 312  DHAKVLHCLDNLGLICAYEAVNICLENILDTTEESKAYRESVLQYKNFLEEVQCRIGESL 371

Query: 373  PLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432
            PL DK FL+ GFDY KAVDLGYIS KLHELLQLF SFG++ QVLC+IFVERII AKV+ER
Sbjct: 372  PLGDKNFLNSGFDYLKAVDLGYISPKLHELLQLFQSFGETRQVLCLIFVERIITAKVIER 431

Query: 433  FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPN 492
            F KKV  L+H  V+Y+TGS TSVD+L PK+QKE LESFR GKVNLLF TDV+EEG+HVPN
Sbjct: 432  FAKKVSCLSHFMVSYMTGSNTSVDSLAPKIQKETLESFRSGKVNLLFTTDVVEEGIHVPN 491

Query: 493  CSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTAL 552
            C YVIRFDLPKTV SY+QSRGRARQ+NS+FI+MLERGN+KQRN+L+DIIRSE S+T++A+
Sbjct: 492  CCYVIRFDLPKTVRSYVQSRGRARQNNSEFIMMLERGNVKQRNQLYDIIRSEYSMTNSAI 551

Query: 553  SRDPEA--CFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK 610
             RDP++  C LK  T+ +T  +IV++TGASVT DS+V+LIH+YC  LP DKYYTPKP F+
Sbjct: 552  KRDPDSDPCLLKDHTFEETNVFIVDATGASVTADSAVSLIHKYCGKLPGDKYYTPKPNFQ 611

Query: 611  YKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSV 670
            + S+E  Y+C+LTLP NA  QTIVGP SRN +L+KQLVCLEAC++LHQ+GAL+DHL PS+
Sbjct: 612  FTSSEGLYKCKLTLPVNAAVQTIVGPPSRNSHLAKQLVCLEACKQLHQMGALDDHLTPSI 671

Query: 671  EEPSENNLISKKNES----LPGAGTTKRKELHGTTPIRALSGRWGEKC-GVILHAYKFNF 725
            EEPSEN  ISK  +S      GAGTTKRKELHGTT I+AL G WGEK    +  AYKF+F
Sbjct: 672  EEPSENACISKGKDSGAGAGAGAGTTKRKELHGTTCIQALCGSWGEKSDDAVFFAYKFDF 731

Query: 726  ACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKC 785
             C+I+T +YSGFVLLIES+L +DVGN E++L+L+ K VKA+VSS GQV L+A+QM KAK 
Sbjct: 732  KCNIITVVYSGFVLLIESKLADDVGNTEMDLFLIGKMVKASVSSCGQVRLNAEQMMKAKR 791

Query: 786  FQELFFNGLFGKLFVKSKSSGS-REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRI 844
            FQE FFNGLFGKLFV SKSSG+ REF L+ +T+SLWSPS MYLLLPLE  +T      RI
Sbjct: 792  FQEFFFNGLFGKLFVGSKSSGAPREFLLRDKTSSLWSPSRMYLLLPLEDNST---DELRI 848

Query: 845  NWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDA 904
            +W GI  C    EF+ + S LG  Q ++ G N S   T    T C   ++I  AN SVDA
Sbjct: 849  HWPGITACTLAAEFLNKNSLLGTEQSDDGGSNPSLNSTGSPVTDCKETNIIRFANSSVDA 908

Query: 905  KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVN---YFSEKYGIVLIH 961
             +L++ VVLAIHTGRIY I+E V++ +AES F    D  S  F N   YF +KY IVL H
Sbjct: 909  NSLRNTVVLAIHTGRIYCIIEAVSDKTAESSFAETVDTVSSEFANFYEYFYKKYNIVLKH 968

Query: 962  PGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV 1021
            PGQPL+ LKQSHNPHNLLVNFND G S K S++G+  +KP+ HVHMPPELL+ +DVP+SV
Sbjct: 969  PGQPLMLLKQSHNPHNLLVNFNDEGVSAKASQAGVVNEKPRFHVHMPPELLLVLDVPVSV 1028

Query: 1022 VKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLE 1081
            +KSLYLLPS+M RLESLMLA+QLREEIN  S N  IPSS+ILEALTTL CCESFSMERLE
Sbjct: 1029 LKSLYLLPSLMHRLESLMLANQLREEINFCSSNIDIPSSMILEALTTLRCCESFSMERLE 1088

Query: 1082 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
            LLGDSVLKYAVSCHLFL YP KHEGQLSARRS AVCNSTLHKLGTD K+QGYIRDSAFDP
Sbjct: 1089 LLGDSVLKYAVSCHLFLRYPNKHEGQLSARRSLAVCNSTLHKLGTDHKIQGYIRDSAFDP 1148

Query: 1142 RRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCA 1201
            RRWVAPGQ  LRPVPC+CGVD+LEVPLD KF T+D KV VGK CD GHRW+ SKTI+DC 
Sbjct: 1149 RRWVAPGQRVLRPVPCKCGVDSLEVPLDKKFQTEDPKVKVGKSCDRGHRWLCSKTISDCV 1208

Query: 1202 EALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKI 1261
            EALIGAYY+ GGL+AAL++MKWLGIDA+L+  +V + I +ASLR+YVP   EI  IESK+
Sbjct: 1209 EALIGAYYLSGGLVAALHVMKWLGIDAELDPLVVAEVINQASLRTYVPNY-EIHMIESKV 1267

Query: 1262 GYEFTVKFLLQEAITHASVQEFYCYQ---------------------------------- 1287
            GY F+VKF LQEA+TH S+ E YCYQ                                  
Sbjct: 1268 GYNFSVKFFLQEALTHESLHESYCYQRLEFLGDSVLDLLITQYLYNHHTNIDPGELTDLR 1327

Query: 1288 ----------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALG 1331
                            +L+KHLQHCSTLL +QI+EYV+SF +   TT   PS+K PKALG
Sbjct: 1328 SASVNNENFAQVAVRHDLHKHLQHCSTLLSNQISEYVQSFTESDNTTRLDPSIKGPKALG 1387

Query: 1332 DLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKEN 1391
            DL+ESIVGA+LIDT LNLD+VWRI +P+LSPIVTPDKLELPP REL ELCDSLGYF+KE 
Sbjct: 1388 DLVESIVGAILIDTNLNLDKVWRIVEPLLSPIVTPDKLELPPFRELNELCDSLGYFIKEK 1447

Query: 1392 CTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTG 1451
            C  KGE+VHAEL LQL   LLVGEG +RSRK AKGKAAS LLK LE      ++G S   
Sbjct: 1448 CKNKGEVVHAELLLQLDHDLLVGEGFDRSRKVAKGKAASCLLKDLE------NRGISRKK 1501

Query: 1452 KLGD--DCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGG 1509
            +  D  D  QT ++D  EP   KRQ+   A I   D  KKA   T  TPV+  +  KKGG
Sbjct: 1502 RKHDCVDSSQTMEDDSLEPTIPKRQR--RAEIQLLDESKKACSATPATPVIVTVKTKKGG 1559

Query: 1510 PRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVE 1569
            PRT+LF+LCK +LWPMP+ + TE KS   +   EG E++ GF SFVSKI L++P +  +E
Sbjct: 1560 PRTTLFELCKKLLWPMPSIKATEHKSSAPMEIGEGPERKKGFISFVSKIILNVPGYDIIE 1619

Query: 1570 CNGDPRADKKSSFDSAALIMLHELERQGKIIISSS 1604
            C GD +ADKKSS DSAAL ML+ELE++GK+II  +
Sbjct: 1620 CTGDAKADKKSSSDSAALFMLYELEQRGKLIIEET 1654


>gi|449489290|ref|XP_004158269.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog
            3a-like [Cucumis sativus]
          Length = 1639

 Score = 2014 bits (5217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1011/1622 (62%), Positives = 1223/1622 (75%), Gaps = 80/1622 (4%)

Query: 44   FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
            FIPR YQ++VFEV  RRNTIAVL TG+GKTMIAVMLIK+I +A+KS+  KKLIIFLAPTV
Sbjct: 37   FIPRRYQMEVFEVGMRRNTIAVLGTGSGKTMIAVMLIKEIGKAMKSSSDKKLIIFLAPTV 96

Query: 104  HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            HLVHQQ++VI+ HTDFEV EYYGA GVD+W+  CW+KE ++ DVLVMTPQILLDALRKA+
Sbjct: 97   HLVHQQFNVIKDHTDFEVAEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAY 156

Query: 164  LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
              L  +C ++IDECH ATGNHPYTKIMKEFYHKSD+KPK FGMTASPV+RKGVSS++DCE
Sbjct: 157  FRLGTICLMIIDECHRATGNHPYTKIMKEFYHKSDSKPKXFGMTASPVIRKGVSSSVDCE 216

Query: 224  GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDA 283
             QI++LES LD+QV+ IEDK E+E++VPSAKE C FY+ +     +LK K+E  W KFDA
Sbjct: 217  CQIADLESILDAQVYAIEDKKEVEIYVPSAKEICIFYEPAMPQTMELKAKIEALWFKFDA 276

Query: 284  SLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKA 343
            SLS  Q +    YKD+D K K L+K+LS  H KI YCLDELG++CAYEA+K+  E V   
Sbjct: 277  SLSNSQEAMQGHYKDVDSKLKALKKRLSSDHLKITYCLDELGIMCAYEAIKVLFENVSVP 336

Query: 344  QEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELL 403
             EE ++YR+S LQ K+FLEE L VIG +L L ++     GFD  KAV+LGYIS KL ELL
Sbjct: 337  NEESDVYRESFLQYKHFLEEALLVIGESLSLENENVPTLGFDLWKAVELGYISPKLFELL 396

Query: 404  QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQ 463
            QLF SFG S QVLC+IFVERIIAA V+ER VKKV  L+H TV+Y+TG   SV AL PKVQ
Sbjct: 397  QLFESFGVSRQVLCLIFVERIIAANVIERIVKKVENLSHFTVSYVTGCDASVGALAPKVQ 456

Query: 464  KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
            KE LE F  GK+NLLF+TDV+EEG+HVPNCS+V+RFDLPKTV SY+QSRGRARQ+NSQ+I
Sbjct: 457  KETLELFCHGKLNLLFSTDVVEEGLHVPNCSFVVRFDLPKTVRSYVQSRGRARQNNSQYI 516

Query: 524  LMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTT 583
            L+LERGNLKQR  LFD+IRS+RS+TD A+SRD +AC LK  + ++T  YIVE+TGASVT 
Sbjct: 517  LLLERGNLKQRALLFDVIRSDRSMTDAAMSRDLDACVLKPFSLMETDCYIVEATGASVTA 576

Query: 584  DSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNL 643
            DSSV L+++YC+ LP DKY++PKPIF+    E +YEC+LTLP  A  QTIVGP++RN NL
Sbjct: 577  DSSVGLVYQYCKKLPGDKYFSPKPIFQLSYGEGSYECQLTLPPTAALQTIVGPSTRNSNL 636

Query: 644  SKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPI 703
            SKQLVCLEAC+KLHQ+GALNDHLLPSVEE SE+++  K N S   AG+TKRKELHG T I
Sbjct: 637  SKQLVCLEACKKLHQMGALNDHLLPSVEEISESDMGLKSNASTSRAGSTKRKELHGRTAI 696

Query: 704  RALSGRWGEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKT 762
            RALSG W E+  G    AYKF+F+CS++ E+YSGFVLLIES+LD+DV NFELELYL+SK 
Sbjct: 697  RALSGTWEEQVEGTTFQAYKFDFSCSVIYEVYSGFVLLIESKLDDDVSNFELELYLLSKM 756

Query: 763  VKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG-SREFFLKRETNSLWS 821
            VKA+VS  G+VHLDA+Q++KAKCFQELFFNGLFG+LF+ SK++G  R+F L+++TN LW 
Sbjct: 757  VKASVSFGGEVHLDAEQITKAKCFQELFFNGLFGRLFIGSKTTGKKRDFLLQKDTNPLWI 816

Query: 822  PSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGG--NSSP 879
             S MYLLLP+++ +      W+I+W  I+ C SVVEF+K+ S L A +    G   +SSP
Sbjct: 817  SSNMYLLLPVDLPDDSTHDLWKIHWRAIDSCVSVVEFLKKNSSLDAERNYGAGAISDSSP 876

Query: 880  CRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGN 939
             R +  +TG +   VIH AN  +D  +LKD VVLAIHTGRIYSIVE+V+N+SAESPFDGN
Sbjct: 877  SRNNSTETGSNAASVIHFANCVLDVHSLKDRVVLAIHTGRIYSIVEVVSNTSAESPFDGN 936

Query: 940  TDD---DSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGM 996
            +D    D  TF +YF+++YGI L  P QPLLRLKQSHNPHNLLVNF D G       SG 
Sbjct: 937  SDKGPPDYITFADYFNKRYGISLSFPKQPLLRLKQSHNPHNLLVNFKDEGFDKL--PSGP 994

Query: 997  NTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFH 1056
              K+PQMHVHMPPEL++ +DVP  V+KS YLLPS++ R ESLMLASQLR+EIN HS +  
Sbjct: 995  AFKRPQMHVHMPPELVLSMDVPKGVLKSSYLLPSLIHRFESLMLASQLRKEINYHSNSLG 1054

Query: 1057 IPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1116
            I SSLILEALTTLG CE+FS+ERLELLGDSVLKYAVSCHLFL +P+KHEGQLS+RR   +
Sbjct: 1055 ISSSLILEALTTLGSCENFSLERLELLGDSVLKYAVSCHLFLKFPEKHEGQLSSRRQQVI 1114

Query: 1117 CNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQD 1176
            CN+TLH LGT   LQGYIRDSAFDPRRWVAPGQ + RPVPC+CGVDT+EVPL  KF T+D
Sbjct: 1115 CNATLHALGTKCGLQGYIRDSAFDPRRWVAPGQCTNRPVPCKCGVDTVEVPLHDKFCTED 1174

Query: 1177 TKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVD 1236
             KVV+GK CD GHRW+ SKTIADCAEALIGAYYV GG+IAAL++MKWLGID +L+V+LV 
Sbjct: 1175 PKVVLGKCCDKGHRWVVSKTIADCAEALIGAYYVDGGIIAALHVMKWLGIDVNLDVALVV 1234

Query: 1237 DCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ------ 1287
            D IT ASLRS      EI  +ESKIGY+F VK LL EA+TH S QE    YCYQ      
Sbjct: 1235 DAITSASLRSCPLGDTEIATLESKIGYDFAVKGLLLEAVTHTSDQEIGVNYCYQRLEFLG 1294

Query: 1288 --------------------------------------------NLYKHLQHCSTLLLSQ 1303
                                                        NL +HLQHCS LL+SQ
Sbjct: 1295 DSVLDLLITWHYYQNYSDIDPGELTDLRSASVNNENFAQVAVRRNLQQHLQHCSGLLMSQ 1354

Query: 1304 ITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPI 1363
            ITEYVK   +  +T       K PK LGD++ESI GA+LIDTKLNLDEVW+I+KP+L+P 
Sbjct: 1355 ITEYVKYLSESQDTGKPLHGNKGPKVLGDMVESIAGAILIDTKLNLDEVWKIYKPLLTPF 1414

Query: 1364 VTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKA 1423
            VTPDKLELPPLRELIELCDSLGYF+K+ CT KGE  HAELRLQL+D LL+GEG ER+RKA
Sbjct: 1415 VTPDKLELPPLRELIELCDSLGYFIKDKCTRKGETFHAELRLQLQDSLLIGEGYERTRKA 1474

Query: 1424 AKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPA 1483
            A+G+AA +LL +LE      S+  S   K              + PS      +   +P+
Sbjct: 1475 ARGEAAHRLLAQLETRGISYSRSGSKKRK--------------QNPS---HDESAMVLPS 1517

Query: 1484 GDSCKKAYC-MTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFC 1542
              +C    C   V TPV+ PIN+KKGGPR++LF+LCK + WPMPTF T E+KSR  +   
Sbjct: 1518 SVNCSTDACDPNVETPVIGPINLKKGGPRSTLFELCKKLQWPMPTFNTVENKSRVQIEIG 1577

Query: 1543 EGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIIIS 1602
            EGLEKR GF+SF+S ITL IP  G VEC G+ RADKKSSFDSA+L+ML EL++QG++II+
Sbjct: 1578 EGLEKRKGFNSFLSNITLQIPNAGYVECEGEARADKKSSFDSASLVMLQELQQQGRVIIN 1637

Query: 1603 SS 1604
             S
Sbjct: 1638 DS 1639


>gi|255550219|ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis]
 gi|223544646|gb|EEF46162.1| Ribonuclease III, putative [Ricinus communis]
          Length = 1660

 Score = 1954 bits (5063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1011/1681 (60%), Positives = 1237/1681 (73%), Gaps = 109/1681 (6%)

Query: 1    MHSPLNSLKRSFGEVHS-PNPPDMGSSGHDHAVDGPSSSTN-----------SINFIPRI 48
            M    N LKRSF E+++  +  DMG +G +H  D  ++S                F PR 
Sbjct: 5    MEQDRNPLKRSFNEMNNLQDFVDMGLNGTNHHHDHDAASQKPDSTITTSTTTGKGFNPRS 64

Query: 49   YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
            YQ+KVFEVA +RNTIAVLETGAGKTMIAVMLI++I QAIKSN FKKLIIFLAPTVHLV+Q
Sbjct: 65   YQVKVFEVAMKRNTIAVLETGAGKTMIAVMLIREIGQAIKSNDFKKLIIFLAPTVHLVNQ 124

Query: 109  QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI 168
            QY+VI+ +T+F+V EYYGAKG+D W  + W+KEIN++DVLVMTPQILLDALRKAFL+L++
Sbjct: 125  QYEVIKDNTNFKVGEYYGAKGIDGWSMKVWEKEINEHDVLVMTPQILLDALRKAFLNLEM 184

Query: 169  VCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISE 228
            V  ++IDECH  TGNHP TKIMKEFYHK  NKPK+FGMTASPVV+KGVSSA+DCE QISE
Sbjct: 185  VSLMIIDECHRTTGNHPCTKIMKEFYHKLSNKPKIFGMTASPVVQKGVSSAVDCEDQISE 244

Query: 229  LESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKL 288
            LE+ LDSQ++TIED+TEM+V VPSA+E C+FYD ++   SD+K K+E SWSKFDASL  L
Sbjct: 245  LETILDSQIYTIEDRTEMDVHVPSAREICKFYDIAQLYSSDIKSKIEASWSKFDASLLSL 304

Query: 289  QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348
            QGS  + YKD DD++KTL+++L + ++KIL CL+ELGLICAYEAVKICLE    +    +
Sbjct: 305  QGSIQSSYKDADDRYKTLQQRLYNDYSKILNCLEELGLICAYEAVKICLENS-PSTAAFD 363

Query: 349  IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS 408
            IYR+ SL+CKYFLEEVL +IG+ LP  D   LD GFDY KAV L YIS KL+ELLQ+FLS
Sbjct: 364  IYREISLKCKYFLEEVLSIIGTYLPHGDSYLLDLGFDYLKAVRLSYISPKLYELLQVFLS 423

Query: 409  FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLE 468
            FG   +VLC+IFV+RII AKV+ERFVKKV  L H TV+Y+TGS TSVDALTPK Q+E + 
Sbjct: 424  FGVDKEVLCLIFVDRIITAKVIERFVKKVAALVHFTVSYVTGSNTSVDALTPKTQRETMY 483

Query: 469  SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528
            +FR GKVNLLF+TDV+ EG+HVPNCS VI FDLPKTV  Y QSRGRARQ++SQ+I+ML+R
Sbjct: 484  AFRSGKVNLLFSTDVLREGIHVPNCSCVICFDLPKTVCCYAQSRGRARQNDSQYIIMLQR 543

Query: 529  GNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVN 588
            GN+KQR++LFD IRSE  VT+TA++RDP+   LK C   +T++YIV+ TGASVT DSSV 
Sbjct: 544  GNVKQRDQLFDFIRSEWLVTNTAINRDPDVWTLKTCVPEETEAYIVDVTGASVTADSSVT 603

Query: 589  LIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLV 648
            LI RYC  LPSD+Y+TP+P F+++  E++++C++ LP++A FQTIVGP  R++ L+KQL 
Sbjct: 604  LIQRYCSKLPSDRYFTPRPTFEFECFEQSFQCKMMLPASAAFQTIVGPVCRSQQLAKQLA 663

Query: 649  CLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSG 708
            CLEAC++LHQ+GAL+DHLLPSVEEP+E++   ++  SL GAGTTKRKELHGTTPI ALSG
Sbjct: 664  CLEACKQLHQMGALDDHLLPSVEEPTEDDHTVRRKGSLAGAGTTKRKELHGTTPIHALSG 723

Query: 709  RWGEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATV 767
             WGE   G   HAYKF F+CSIV+E YSG++LLIES+LD+DVGN EL+L+LV KTV+A+V
Sbjct: 724  SWGENLDGATFHAYKFEFSCSIVSEKYSGYILLIESKLDDDVGNIELDLFLVRKTVRASV 783

Query: 768  SSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGS-REFFLKRETNSLWSPSYMY 826
            SS GQVHLDA+QM KAKCF ELFFN LFGKLF  SKSS S REF L++ET+ LW  S MY
Sbjct: 784  SSCGQVHLDAEQMMKAKCFHELFFNALFGKLFSGSKSSRSPREFLLQKETSLLWILSNMY 843

Query: 827  LLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCK 886
            LLLPLE  +   D SW+INW G+N C++VVEF+K+  FLGA   N         R     
Sbjct: 844  LLLPLEAFSASSDESWKINWRGVNGCSNVVEFLKKNCFLGAEHYNGE-------RVRSSV 896

Query: 887  TGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFD---GNTDDD 943
            T C G + +H AN SVD + +KDMVVLAIHTG+IYS+VE+V ++SAESPF+   G     
Sbjct: 897  TECSGGNAVHFANISVDVERVKDMVVLAIHTGKIYSVVEVVGDASAESPFEQNVGGAPSK 956

Query: 944  SKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQM 1003
              TF  YF++KYGIVL+ P QPLL LKQSH PHNLL   ++        K G+   K + 
Sbjct: 957  FSTFSEYFNKKYGIVLLRPRQPLLLLKQSHKPHNLLNPPDE-----DTLKDGLVVAKQRQ 1011

Query: 1004 HVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLIL 1063
               MPPELLV +DVPI  +KS YLLPS+M RLESLMLASQLR+EI C   NFHIPS LIL
Sbjct: 1012 FARMPPELLVSIDVPIQTLKSSYLLPSLMYRLESLMLASQLRQEIACQVSNFHIPSLLIL 1071

Query: 1064 EALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHK 1123
            EA+TT   CE  SMERLELLGDSVLKY+VSC LFL YP KHEGQLSA+R+ AVCNSTLH+
Sbjct: 1072 EAITTPRSCEKVSMERLELLGDSVLKYSVSCDLFLRYPTKHEGQLSAQRTRAVCNSTLHQ 1131

Query: 1124 LGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGK 1183
            LG   KLQGYIRDSAF PR WVAPGQ     V C CGVDTLEVPLD KF T+D KV +  
Sbjct: 1132 LGIGCKLQGYIRDSAFIPRYWVAPGQQPAFYVSCTCGVDTLEVPLDAKFQTEDPKVQIAI 1191

Query: 1184 PCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRAS 1243
             C  GHRWM SKTI+DC EA+IGAYYV GGL+AAL++M+WLG+D + + SLVD  I  AS
Sbjct: 1192 CCSKGHRWMCSKTISDCVEAVIGAYYVSGGLMAALHVMQWLGMDVEFDPSLVDKIIKTAS 1251

Query: 1244 LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE---FYCYQ------------- 1287
            +RSY P+ +EIK IESK+GY F+VKFLLQEA+THAS+QE    YCYQ             
Sbjct: 1252 VRSYTPKEDEIKGIESKLGYTFSVKFLLQEAMTHASMQEQGIGYCYQRLEFLGDSVLDLL 1311

Query: 1288 -------------------------------------NLYKHLQHCSTLLLSQITEYVKS 1310
                                                 +LYKHLQHCSTLLLSQI EY++S
Sbjct: 1312 ITWHLYQNHTSMDPGELTDLRSACVSNENFAQVVVRRDLYKHLQHCSTLLLSQIKEYLES 1371

Query: 1311 FPKPGETTD-SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKL 1369
            F +  E    +GP  K PKALGDLLESI GA+LID KLNLDEVWRIF P+LSP+ TP  L
Sbjct: 1372 FHESDEVAKATGP--KGPKALGDLLESIAGAMLIDAKLNLDEVWRIFMPLLSPLATPQNL 1429

Query: 1370 ELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAA 1429
            ELPPLREL++LC+SLGYF+KE C    ++VHAELRLQL DVLLVG G +RSRKAAKGKAA
Sbjct: 1430 ELPPLRELMQLCNSLGYFIKEKCINNNDIVHAELRLQLNDVLLVGNGCDRSRKAAKGKAA 1489

Query: 1430 SQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPP---------SCKRQKGTEAA 1480
            + LLKKLE      ++G + +       +Q +   +   P           K+ K  E  
Sbjct: 1490 THLLKKLE------NRGITYSWGHSKRRKQDSNHVVDSSPLDITNDKAKDHKKPKKLENQ 1543

Query: 1481 IPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLV 1540
             PAG     ++       ++  INMKKGGPRT LF+LCK + W  PT+ +TE+KS T ++
Sbjct: 1544 SPAGSGGDPSF-----AGIIEAINMKKGGPRTDLFELCKKVQWTTPTYSSTENKSSTPIL 1598

Query: 1541 FCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKII 1600
            F EG+E+   ++SFVS ITL+IP +G +EC GDPR DKKSS D+AAL ML+EL++QG +I
Sbjct: 1599 FDEGIER---YNSFVSTITLNIPFYGTIECTGDPRPDKKSSCDTAALAMLYELQKQGLLI 1655

Query: 1601 I 1601
            I
Sbjct: 1656 I 1656


>gi|356509849|ref|XP_003523657.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Glycine max]
          Length = 1671

 Score = 1900 bits (4923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1001/1683 (59%), Positives = 1227/1683 (72%), Gaps = 110/1683 (6%)

Query: 2    HSPLNSLKRSFGEVHSPNPPDMGSSGHDHAVD------------GPSSSTNSINFIPRIY 49
            HS   S KR+  +      P+      DH  D             PS  +   N  PR Y
Sbjct: 10   HSQDQSRKRNLPDADDSPAPNFHIDSSDHNQDQSKKRKQPNDEDSPSLESPCSNMNPRRY 69

Query: 50   QLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109
            Q++V+EVA+RRNTIAVL+TG+GKT+IAVML+K++ QAIK++G KKLIIFLAPTVHLV+QQ
Sbjct: 70   QIEVYEVARRRNTIAVLDTGSGKTLIAVMLMKEVGQAIKTSGVKKLIIFLAPTVHLVNQQ 129

Query: 110  YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIV 169
            +  I+  TDF+VEEYYGAKGVD W  + W+KEI+ NDVLVMTPQILLDALRKAFL ++++
Sbjct: 130  FKNIKFLTDFQVEEYYGAKGVDTWTLKTWEKEISNNDVLVMTPQILLDALRKAFLRMEMI 189

Query: 170  CFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISEL 229
            C IVIDECH   GNHPYTKIMKEFYH+++ KPK+FGMTASPV +KGVSS MDCE QISEL
Sbjct: 190  CLIVIDECHRTIGNHPYTKIMKEFYHQANEKPKIFGMTASPVGKKGVSSTMDCEDQISEL 249

Query: 230  ESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQ 289
            ES LDSQ +T+ED+TEM+  VPSAKESCR+YDQ++F    LK K+E    KFDA LS+ Q
Sbjct: 250  ESILDSQRYTVEDRTEMDRCVPSAKESCRYYDQARFSALSLKPKIEALSFKFDALLSENQ 309

Query: 290  GSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349
             +    YKD+++K KTL +++S+  AKIL+CL++LG++CAYEAVKIC E   K++ ECEI
Sbjct: 310  SN----YKDVENKFKTLSQRMSNELAKILHCLEDLGILCAYEAVKICHENFSKSEGECEI 365

Query: 350  YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSF 409
            YR+  LQC  FLEEV+ +I  +L LADK  L+  F+YS+A DLGYIS KL EL++LF SF
Sbjct: 366  YRKGYLQCITFLEEVIKLIEESLHLADKKILEVDFNYSQAEDLGYISPKLIELIKLFQSF 425

Query: 410  GKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLES 469
            G+S+QVLC+IFV+RII AKV++RF K VP ++H TV+YLTG+ TSVDAL PK QKE+L+S
Sbjct: 426  GESSQVLCLIFVDRIITAKVIQRFAKTVPNISHFTVSYLTGNNTSVDALAPKRQKEILDS 485

Query: 470  FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG 529
            FR GKVNLLF TDV+EEG+HVPNCS VIRFDLPKTV SY+QSRGR+RQ NSQF++MLERG
Sbjct: 486  FRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERG 545

Query: 530  NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNL 589
            NLKQR++LFDIIRSERS+TD ++ ++ E+  L+AC   KT +Y VESTGAS T DSSV+L
Sbjct: 546  NLKQRDQLFDIIRSERSMTDASIYKEHESS-LRACMVGKTNAYYVESTGASFTLDSSVSL 604

Query: 590  IHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVC 649
            IHRYC  LP DKY   KP F++ S E  Y+C+L LPSN+ FQTI+GP+ ++  L+K L C
Sbjct: 605  IHRYCGTLPRDKYSCVKPNFEFLSVEGGYQCKLILPSNSAFQTIIGPSGKDMRLAKHLAC 664

Query: 650  LEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGR 709
             EAC+KLHQ+GALN+HL+P +E+ SE++ I K  ES  GAGTTKRKELHG   I ALSG 
Sbjct: 665  FEACKKLHQMGALNEHLVPLIEDSSEDDHIVKNKESSSGAGTTKRKELHGKANIHALSGA 724

Query: 710  WGEKCG-VILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVS 768
            WG+K   V  +AYKF F C+IV+EIYSGF LLIESELD DVGN  L+LYLVSK VKA+VS
Sbjct: 725  WGDKLTRVKFNAYKFEFTCNIVSEIYSGFALLIESELDEDVGNVNLDLYLVSKIVKASVS 784

Query: 769  SSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLL 828
            S GQV LDA+QM +AKCF ELFFNGLFG+L +KSKS+G REF L+++TNSLWSP ++YLL
Sbjct: 785  SCGQVDLDAEQMMRAKCFHELFFNGLFGRLVLKSKSAGEREFLLQKDTNSLWSPKHLYLL 844

Query: 829  LPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTG 888
            LPLE +N   +GS +INW GIN CAS ++F++ K  L    C++NG  +SP  TS  +  
Sbjct: 845  LPLEKLNDICEGSLQINWCGINSCASAIKFLRRKFSLVTGDCDDNGTITSPHDTSSSEME 904

Query: 889  CHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD--DSKT 946
            C G + IH AN  VDA N+KD VVLAIHTG+IY I+EI +N SAESPF GN +   +S T
Sbjct: 905  CVGANKIHFANCVVDADNIKDRVVLAIHTGKIYCIIEIDSNLSAESPFYGNNEKSKESIT 964

Query: 947  FVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVH 1006
            F +YFS+ YGI L HPGQP+LRLKQSHNPHNLL NF +     K SK G    K  +HVH
Sbjct: 965  FSDYFSKSYGISLRHPGQPMLRLKQSHNPHNLLFNFYE---EDKSSKIGPAASKLPVHVH 1021

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            +PPELL  +DV   V+KSLYLLPS+M R+ESLML+SQLREEI+  +  F+I SSLILE+L
Sbjct: 1022 IPPELLYILDVKRDVLKSLYLLPSLMYRIESLMLSSQLREEIDGQTSKFNIRSSLILESL 1081

Query: 1067 TTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
            TTL C ESFSMERLELLGDSVLKY VSCHLFL YPKKHEGQLSARRS AVCNSTLHKLGT
Sbjct: 1082 TTLRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSARRSSAVCNSTLHKLGT 1141

Query: 1127 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD 1186
            DRKLQGYIRDSAF+PRRWVAPGQ S+  V C+CG++TLEVPLD KF T+D KVVVGK CD
Sbjct: 1142 DRKLQGYIRDSAFEPRRWVAPGQRSIHLVCCDCGLETLEVPLDAKFHTEDPKVVVGKFCD 1201

Query: 1187 MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRS 1246
             GH WM SKTIADC EALIGAYYV GGL A+L +MKWLGI A+LE+SLVD+ IT ASLR+
Sbjct: 1202 RGHCWMCSKTIADCVEALIGAYYVDGGLFASLNVMKWLGIGAELELSLVDEAITAASLRT 1261

Query: 1247 YVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ---------------- 1287
             +P+ +EI  +E KIGYEF+VK LL EAITH S +E     CY+                
Sbjct: 1262 CLPKESEIASLEKKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDLLITW 1321

Query: 1288 ----------------------------------NLYKHLQHCSTLLLSQITEYVKSFPK 1313
                                              NL++HL H S LLLSQI+EYVK   +
Sbjct: 1322 HLYQSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLHSSGLLLSQISEYVKVISE 1381

Query: 1314 PGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPP 1373
                  S PS+ APKALGD++ESIVGA+LIDTKL+LD+VW +F  +LSPIVTPDKLELPP
Sbjct: 1382 SDPR--SLPSISAPKALGDVVESIVGAILIDTKLSLDQVWNVFYSLLSPIVTPDKLELPP 1439

Query: 1374 LRELIELCDSLGYF--VKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQ 1431
             REL ELCDSLGYF  VKENC   G  +H E+ +QL + LLV EG+  ++K AKG+AA  
Sbjct: 1440 FRELNELCDSLGYFVKVKENCEKVGSAMHVEVSVQLPNALLVREGKGANKKTAKGEAAFY 1499

Query: 1432 LLKKLEVCEKRISKGA-------------SNTGKLGDDCRQTTKEDLPEPPSCKRQKGTE 1478
            LLK LE  ++ IS G+               +  L  D     +E   EP S KR    E
Sbjct: 1500 LLKDLE--KQGISHGSFMSKGKRDNPDHVYGSSHLKMDSSILIEEHSSEPASHKRHILDE 1557

Query: 1479 AAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTL 1538
              +               T +   INMKKGGPRT+L+++CK + WP+PTF++TE K R+L
Sbjct: 1558 TNL---------------TAINLSINMKKGGPRTTLYEVCKKLQWPVPTFDSTEYKDRSL 1602

Query: 1539 LVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGK 1598
               CEGL+   G + FVSKITL IP +GN+E  G+ R+DKK+SFDSAA+ ML EL+R GK
Sbjct: 1603 FESCEGLQGSKGQNCFVSKITLCIPNYGNIESKGEARSDKKTSFDSAAVQMLLELQRLGK 1662

Query: 1599 III 1601
            + I
Sbjct: 1663 VEI 1665


>gi|224141703|ref|XP_002324204.1| dicer-like protein [Populus trichocarpa]
 gi|222865638|gb|EEF02769.1| dicer-like protein [Populus trichocarpa]
          Length = 1492

 Score = 1890 bits (4897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 975/1610 (60%), Positives = 1163/1610 (72%), Gaps = 177/1610 (10%)

Query: 49   YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
            YQ KVFEVA +RNTIAVLETGAGKTMIAVMLIK I QA+  +G K+LI+FLAPTVHLV+Q
Sbjct: 1    YQSKVFEVAVKRNTIAVLETGAGKTMIAVMLIKQIGQAVFYSGVKRLILFLAPTVHLVNQ 60

Query: 109  QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI 168
                I+  T+F V EYYGAKG+DEW  + W+KEI+++DVLVMTPQILLDALRKAFL+L +
Sbjct: 61   AC-FIKSQTNFRVGEYYGAKGIDEWSLKSWEKEIDEHDVLVMTPQILLDALRKAFLNLKM 119

Query: 169  VCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISE 228
            V  +++DECH +TGNHPY KIMK                                     
Sbjct: 120  VSLLILDECHRSTGNHPYKKIMK------------------------------------- 142

Query: 229  LESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKL 288
                    ++TIED+ E+ V+VPSAKE CRFYD++     +LK K+E SWSKFDAS+  L
Sbjct: 143  --------IYTIEDRAEVHVYVPSAKELCRFYDKAWCSYVELKDKIEASWSKFDASMLAL 194

Query: 289  QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348
            QGS  +CYKDMDDK K  RKQLS  HAKIL CL++LGLICAYEA+K+CLE       EC+
Sbjct: 195  QGSTQSCYKDMDDKLKATRKQLSKDHAKILNCLEDLGLICAYEAIKVCLENAGNPTGECK 254

Query: 349  IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS 408
            +Y++ SLQC+YFLE+VLH+IG +L   D   LD GFD S A+  GYIS KLHELLQLFLS
Sbjct: 255  LYQEISLQCRYFLEDVLHIIGESLLHGDNFSLDHGFDCSAALGFGYISPKLHELLQLFLS 314

Query: 409  FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLE 468
            FG++ +VLC+IFVERII AKVVERF+KKV  L H TV+YLTG+  S DAL PK+Q E LE
Sbjct: 315  FGEAREVLCLIFVERIITAKVVERFMKKVEVLAHFTVSYLTGTNASADALAPKMQMETLE 374

Query: 469  SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528
            SFR GKVNLLFATDV+EEG+HVPNCS VIRFDLPKTV SY+QSRGRARQ+NS FI MLER
Sbjct: 375  SFRSGKVNLLFATDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQNNSHFITMLER 434

Query: 529  GNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVN 588
            GN KQR++LF+IIRSE S+TDTA++RDP    LKAC     K+Y+V+ TGASVT DSS  
Sbjct: 435  GNTKQRDQLFEIIRSEWSMTDTAINRDPNVWNLKACASEAAKAYVVDVTGASVTADSS-- 492

Query: 589  LIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLV 648
                                               LP NA FQT+VGPT RN+ L+KQLV
Sbjct: 493  -----------------------------------LPPNAAFQTLVGPTCRNQQLAKQLV 517

Query: 649  CLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSG 708
            CLEAC+KLHQ+GAL+DHLLPSVEEPSE  ++  K+ S  GAGTTKRKELHGT  I ALSG
Sbjct: 518  CLEACKKLHQMGALDDHLLPSVEEPSEIAVVKSKSTS-AGAGTTKRKELHGTACIHALSG 576

Query: 709  RWGEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATV 767
             WGEK  G   HAYKF+F+CSIV++IYSGF+LLIES+LD+DVGN EL+LYLV+K VK+++
Sbjct: 577  SWGEKLDGATFHAYKFDFSCSIVSQIYSGFILLIESKLDDDVGNIELDLYLVAKIVKSSI 636

Query: 768  SSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYL 827
            SS G VHLDA QM+KAK FQE FFNGLFGKLF  SKSS  REF L++ET  LWSPS MYL
Sbjct: 637  SSCGVVHLDAAQMTKAKRFQEFFFNGLFGKLFTGSKSS--REFLLQKETTLLWSPSNMYL 694

Query: 828  LLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKT 887
            LLPLE  +   +   +I+W GI  C+SVVE++K  SFL AA+  + GGN  P        
Sbjct: 695  LLPLEPWSISSNDWCKIDWKGIEACSSVVEYLK-NSFL-AARSYSGGGNPLPDNVQSSTI 752

Query: 888  GCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSK-- 945
             C+G ++IH AN  V+ +N+KDMVVLAIHTGRIYSIV++VN+SSAES F+GN D+ ++  
Sbjct: 753  ECNGTNLIHFANALVNVENIKDMVVLAIHTGRIYSIVKVVNDSSAESAFEGNADNVTEFS 812

Query: 946  TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHV 1005
            T+  YF+++YGIVL+HPGQPLLRLKQSHNPHN LVNFND G     SK GM  +K Q HV
Sbjct: 813  TYTEYFNKRYGIVLMHPGQPLLRLKQSHNPHNHLVNFNDEGLLVCDSKDGMVGRKQQQHV 872

Query: 1006 HMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEA 1065
            HMPPELL+++DVPISVVKS+YL+PS+M RLE LMLASQLR+EI+CH+ NF+IPSSLILEA
Sbjct: 873  HMPPELLIKIDVPISVVKSIYLMPSLMHRLECLMLASQLRQEIDCHAPNFYIPSSLILEA 932

Query: 1066 LTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG 1125
            +TTL CCESFSMERLELLGDSVLKYAVSCHLFL YP KHEGQLS+ RS AVCNSTLHKLG
Sbjct: 933  ITTLRCCESFSMERLELLGDSVLKYAVSCHLFLKYPNKHEGQLSSWRSGAVCNSTLHKLG 992

Query: 1126 TDRKLQGYIRDSAFDPRRWVAPGQLSLR-PVPCECGVDTLEVPLDGKFFTQDTKVVVGKP 1184
            TD K+QGYI DSAFDPRRW APGQ S+R P PC+CGVDTLEVPLD KF T+   V VGKP
Sbjct: 993  TDCKVQGYILDSAFDPRRWAAPGQKSVRTPAPCKCGVDTLEVPLDRKFQTESAIVKVGKP 1052

Query: 1185 CDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASL 1244
            CD GHRWMGSKTI+DC E++IGAYYV GGLIAA+++MKW GI+A+L+ SL+ + IT ASL
Sbjct: 1053 CDSGHRWMGSKTISDCVESVIGAYYVSGGLIAAIHVMKWFGINAELDPSLISEAITSASL 1112

Query: 1245 RSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE---FYCY--------------- 1286
            RSY+P+ +EIK +ESK+GY F VKF+LQEA+THAS+QE    YCY               
Sbjct: 1113 RSYIPKEDEIKSLESKLGYTFGVKFVLQEAMTHASIQEQGVTYCYQRLEFLGDSVLDLLI 1172

Query: 1287 -----------------------------------QNLYKHLQHCSTLLLSQITEYVKSF 1311
                                               QNLY HL HCSTLL SQITEYV SF
Sbjct: 1173 TWHLYQSHTDVDPGELTDLRSASVNNDNFAQVAVKQNLYTHLLHCSTLLQSQITEYVNSF 1232

Query: 1312 PKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLEL 1371
             +  + T      KAPKALGDL+ESI GA+LIDTK NLD VWRIFKP+LSPIVTP+KLEL
Sbjct: 1233 HESDQGT------KAPKALGDLIESIAGALLIDTKFNLDGVWRIFKPLLSPIVTPEKLEL 1286

Query: 1372 PPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQ 1431
            PPLREL+ELCDS+G FVKE CT K EMVHA+L +QL + LL GEG E++RKAAKGKAAS 
Sbjct: 1287 PPLRELVELCDSIGVFVKEKCTKKAEMVHAQLWVQLDNELLSGEGYEKNRKAAKGKAASC 1346

Query: 1432 LLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAY 1491
            LLKKL+VC       A     +         E L + P                      
Sbjct: 1347 LLKKLQVCNSGNCNHAFFCFLMNSIVPSNIVEYLAKSPP--------------------- 1385

Query: 1492 CMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGF 1551
                   V+  IN KKGGPRTSL+ LCK + W MPTF+TTE+KSRT + F EG +KRTGF
Sbjct: 1386 -----FAVIESINKKKGGPRTSLYDLCKKVQWTMPTFDTTETKSRTAIEFGEGPDKRTGF 1440

Query: 1552 SSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1601
            +S+VSKI ++IP +G VEC G+  ADKK+S+DSAAL ML+ELE++G++II
Sbjct: 1441 NSYVSKIIMNIPSYGVVECAGEASADKKTSYDSAALAMLNELEKRGQLII 1490


>gi|357465903|ref|XP_003603236.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
 gi|355492284|gb|AES73487.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
          Length = 1758

 Score = 1811 bits (4690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 960/1732 (55%), Positives = 1207/1732 (69%), Gaps = 159/1732 (9%)

Query: 7    SLKRSFGEVHS-PNPPDMGSSGHDHAVDGPSSSTNSI-NFIPRIYQLKVFEVAKRRNTIA 64
            +LKR F  +++ PN             D P+     I N +PR  QL+ FEVAK+RNTIA
Sbjct: 22   NLKRKFDHLYAKPNVEQ----------DSPAQEETLIANLVPRRDQLEAFEVAKKRNTIA 71

Query: 65   VLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEY 124
            +++TG+GKT+IA++LIK+  QAI+S+G KKLI+FLAPTVHL   Q   I+++TD +VEEY
Sbjct: 72   IMDTGSGKTLIAILLIKETGQAIRSSGVKKLIVFLAPTVHL---QCKNIKLNTDLQVEEY 128

Query: 125  YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH 184
            YG+KGVD W+ + WQKEI+ NDV+VMTPQILLDA RKAFLS++++C +VIDECH A+GNH
Sbjct: 129  YGSKGVDTWNLKSWQKEISDNDVMVMTPQILLDAFRKAFLSIEMICLMVIDECHWASGNH 188

Query: 185  PYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKT 244
            PY KIM EFYH+++ KPK+FGMTASPV ++GVSS + CEGQIS+LE+ LDS+ + ++D+T
Sbjct: 189  PYAKIMAEFYHQANEKPKIFGMTASPVGKRGVSSTLVCEGQISDLENILDSRSYVVKDRT 248

Query: 245  EMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHK 304
            EM+V++PSAKESCRFYD ++F    LK K+E SWSK D  LS+ Q      YKDMD K K
Sbjct: 249  EMDVYIPSAKESCRFYDPARFHALSLKPKIEASWSKCDVLLSEFQSD----YKDMDQKFK 304

Query: 305  TLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEV 364
             L +++S+  AKILYCL++LGL+CAYEA KIC +K  K   ECE+YR+++LQC   +EEV
Sbjct: 305  ALHQRMSNELAKILYCLEDLGLLCAYEAAKICQQKFSKIHGECEVYRKANLQCVTIIEEV 364

Query: 365  LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFG-------------- 410
            + +I  +L LAD++ LD  FD SKAV +GYIS KL EL++LF +FG              
Sbjct: 365  IKIIEESLHLADEMILDVEFDCSKAVGMGYISPKLLELIKLFETFGYVFTKVTLALNVFT 424

Query: 411  -----------------KSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT 453
                             + +Q+LC+IFVERII AKV+ERFVKKV  ++HLTVAY+TGS T
Sbjct: 425  RTNIGINCISINEYKRVEPSQLLCLIFVERIITAKVIERFVKKVSQISHLTVAYVTGSNT 484

Query: 454  SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
            S DAL  K QKE+L+SFR GKVNLLF TDV+EEG+HVPNCS VIRFDLP TV SYIQSRG
Sbjct: 485  SADALARKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPTTVCSYIQSRG 544

Query: 514  RARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYI 573
            R+R+ NSQFILMLERGNLKQRN+LFDIIRSERS+ D A+S+D E+  L+A T  KT+SY 
Sbjct: 545  RSRRANSQFILMLERGNLKQRNQLFDIIRSERSMNDAAVSKDHES-NLRAFTVRKTESYC 603

Query: 574  VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQT 632
            V+STGASVT DSSV+LI++YCE LP DKY + KP F     E   + C+L LP NA FQT
Sbjct: 604  VDSTGASVTLDSSVSLINQYCEKLPRDKYSSAKPNFVSLPMEGGGHVCKLILPPNAAFQT 663

Query: 633  IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTT 692
            +VGP+ ++   +K LVCLEAC+KLHQ+GALNDHL+P VE+P E + I K  ES   A   
Sbjct: 664  LVGPSGKDVRQAKTLVCLEACKKLHQMGALNDHLVPFVEDPLEADNIIKNKESSAAAAAG 723

Query: 693  ----KRKELHGTTPIRALSGRWGEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDN 747
                KRKELHGT  +RAL G WG+K  G   HAYKF F C+IV+EIYSGFVLL+ES+LD+
Sbjct: 724  AGTTKRKELHGTASVRALCGSWGDKPDGAKFHAYKFEFKCNIVSEIYSGFVLLVESKLDD 783

Query: 748  DVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKS-SG 806
            DVGN EL+LYL+SK VK +V S GQV LDA+Q++KAK F ELFFNGLFG+L  KS +  G
Sbjct: 784  DVGNIELDLYLISKMVKTSVISCGQVDLDAEQVTKAKGFHELFFNGLFGRLIRKSTTVQG 843

Query: 807  SREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEK-SFL 865
             REF L++++  LWSP   YLLLPLE  N     S +I+WS IN CAS +EF++++ S +
Sbjct: 844  EREFLLQKDSELLWSPKNSYLLLPLEKSNDICIRSLQIHWSAINSCASAIEFVRQRFSLV 903

Query: 866  GAAQCNNNGGNSSPCRTS-------PCKTG------------------CHGKDVIHLANG 900
                 +N+   S PC T        PC T                   C   ++ H AN 
Sbjct: 904  TEVSDDNSKIISPPCDTDNSKIISPPCDTDNRKIISPPCDTRSSSDMECESTNMFHFANC 963

Query: 901  SVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTD----DDSKTFVNYFSEKYG 956
             VD  ++KD V LAIHTG++Y I+++V+NSSAESPFDGN+D    +D  TF  YF ++YG
Sbjct: 964  VVDVSSVKDNVALAIHTGKVYCIIDVVDNSSAESPFDGNSDKSGAEDKMTFTQYFQKRYG 1023

Query: 957  IVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVD 1016
            I L HP QPLLRLKQ HN HNL +N  +  G  K S+ G    K  +HVH+P ELL  +D
Sbjct: 1024 ITLRHPEQPLLRLKQGHNAHNLFLNLPEEDGGDKSSQVGPVAPKVPVHVHIPSELLCLLD 1083

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            V   V KS+YLLPS+M R+ESLML+SQLR EIN H+ NF IPSSL+LEALTTL CCE FS
Sbjct: 1084 VKRDVYKSMYLLPSLMYRIESLMLSSQLRAEINGHTDNFKIPSSLVLEALTTLRCCEKFS 1143

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
            MERLELLGDSVLKYAVSCHL+L YPKKHEG LS+ R WAV NSTLHKLGTD  LQGYIRD
Sbjct: 1144 MERLELLGDSVLKYAVSCHLYLKYPKKHEGHLSSLRQWAVRNSTLHKLGTDHNLQGYIRD 1203

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
            SAF+PRRW+APGQ  +  VPC+CG++TLEVPLD KF T+D KVVVGK CD GHRWM SKT
Sbjct: 1204 SAFEPRRWIAPGQDCIHTVPCDCGLETLEVPLDVKFHTEDPKVVVGKLCDRGHRWMCSKT 1263

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD 1256
            IADC EALIGAYYVGGGLIA+L+MMKWLGID+ LE S+VD  IT ASL +Y P++NEI  
Sbjct: 1264 IADCVEALIGAYYVGGGLIASLHMMKWLGIDSGLEPSMVDKAITAASLHTYTPKVNEIAS 1323

Query: 1257 IESKIGYEFTVKFLLQEAITHASVQEF---YCYQ-------------------------- 1287
            +E+KIGYEF+VK LL EA TH S  E     CY+                          
Sbjct: 1324 LEAKIGYEFSVKGLLVEATTHLSESEHGTGCCYERLEFLGDSVLDLLITWHLFQSHTEID 1383

Query: 1288 ------------------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPS 1323
                                    NL++HL H S LL SQI EY K   +P +       
Sbjct: 1384 PGELTDLRSASVNNENFAQAAVRRNLHQHLLHSSGLLQSQILEYAKVISEPEDNAVPLQG 1443

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDS 1383
            +KAPKALGDL+ESI GA+LIDTKL+LD+VW++F P+LSPIVTP+KLELPPLREL++L DS
Sbjct: 1444 IKAPKALGDLVESIAGAILIDTKLDLDQVWKVFNPLLSPIVTPEKLELPPLRELMQLSDS 1503

Query: 1384 LGYFVKENCT--LKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEK 1441
            LGYFVK   +   KG M H E+R+QL +  LV EG+  ++K+AKG AA QLLK LE  ++
Sbjct: 1504 LGYFVKVKVSHDKKGTMEHVEIRVQLPNERLVREGKGPNKKSAKGDAAFQLLKDLE--KR 1561

Query: 1442 RISKGASNTGKLGD----DCRQTTKEDLPEPPSCKRQK-------GTEAAIPAGDSCKKA 1490
             IS  +S   K+ D     C+   ++  P+P + K+ K         E+     D   KA
Sbjct: 1562 GISYSSSKGKKVMDYTIPACQ--IEDQPPKPVAIKKPKLDKTNSAADESTGDLKDVSSKA 1619

Query: 1491 YCMTVGTPVVAPINM-KKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRT 1549
               +   PVV+ I M KKGGPR+ L+++CK  LWP+P+F++TE K RTL   C+GLE   
Sbjct: 1620 SDTSGSIPVVSSIKMNKKGGPRSELYEVCKKKLWPLPSFDSTEYKDRTLFESCKGLEGSK 1679

Query: 1550 GFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1601
            G + FVSKITL IP +G+++C G+ R+DKKSS+DSAA+  L+EL+R GKI+I
Sbjct: 1680 GLNCFVSKITLGIPGYGDIKCQGEARSDKKSSYDSAAVQALYELQRLGKIMI 1731


>gi|115441737|ref|NP_001045148.1| Os01g0909200 [Oryza sativa Japonica Group]
 gi|75321191|sp|Q5N870.1|DCL3A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3a; AltName:
            Full=Dicer-like protein 3a; Short=OsDCL3a
 gi|56785369|dbj|BAD82327.1| putative Endoribonuclease Dicer homolog [Oryza sativa Japonica Group]
 gi|113534679|dbj|BAF07062.1| Os01g0909200 [Oryza sativa Japonica Group]
          Length = 1651

 Score = 1512 bits (3914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 823/1656 (49%), Positives = 1061/1656 (64%), Gaps = 137/1656 (8%)

Query: 43   NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
            +F PR YQL V+EVA RRNTIA+L+TGAGKTMIAVMLIK+  +  ++    K+IIFLAPT
Sbjct: 29   DFTPRRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPT 88

Query: 103  VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
            V LV QQ +VI +HTDFEVE+YYGAKGVD+W    WQ++I+K  V+VMTPQ+ L ALR A
Sbjct: 89   VQLVTQQCEVIEIHTDFEVEQYYGAKGVDQWTGPRWQEQISKYQVMVMTPQVFLQALRNA 148

Query: 163  FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDC 222
            FL LD+V  ++ DECHHATGNHPYT+IMKEFYHKS++KP VFGMTASPV+RKG+SS +DC
Sbjct: 149  FLILDMVSLMIFDECHHATGNHPYTRIMKEFYHKSEHKPSVFGMTASPVIRKGISSHLDC 208

Query: 223  EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD 282
            EGQ  ELE+ LD++++T+ D+ E+E  VPSAKE CR+YD    C  DL  +L V  SK+D
Sbjct: 209  EGQFCELENLLDAKIYTVSDREEIEFCVPSAKEMCRYYDSKPVCFEDLSEELGVLCSKYD 268

Query: 283  ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK--- 339
            A +++LQ  + + YKD DD  K  +++LS   AKI YCLD++GLICA EA KIC+E+   
Sbjct: 269  ALITELQNKRSDMYKDADDITKESKRRLSKSIAKICYCLDDVGLICASEATKICIERGQE 328

Query: 340  ------VLKAQEE------CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
                  V+ A ++        ++ ++S     F EE LH+I   L     + L+      
Sbjct: 329  KGWLKEVVDATDQQTDANGSRLFAENSALHMKFFEEALHLIDKRLQQGIDMLLNSESGCV 388

Query: 388  KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAY 447
            +A   GYIS KL+EL+Q+F SF  S    C+IFV+R I A+V++R +KK+  L H TV++
Sbjct: 389  EAAKTGYISPKLYELIQIFHSFSNSRHARCLIFVDRKITARVIDRMIKKIGHLAHFTVSF 448

Query: 448  LTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
            LTG  +SVDALTPK+QK+ L+SFR GKVNLLF TDV EEG+HVP CS VIRFDLP+T  S
Sbjct: 449  LTGGRSSVDALTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRFDLPRTTRS 508

Query: 508  YIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYV 567
            Y+QSRGRARQ +SQ+ILM+ERGN+KQ + +  I+RSE S+   A SR+            
Sbjct: 509  YVQSRGRARQEDSQYILMIERGNVKQNDLISAIVRSETSMVKIASSRESGNLSPGFVPNE 568

Query: 568  KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSN 627
            +   Y V +TGA VT DSS+++++RYCE LP DK Y+PKP F++   ++ Y C L LP +
Sbjct: 569  EINEYHVGTTGAKVTADSSISIVYRYCEKLPQDKCYSPKPTFEFTHHDDGYVCTLALPPS 628

Query: 628  APFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLP 687
            A  Q +VGP +RN + +KQLVCL+AC+KLH++GAL+DHL  SVE+P     I  KN+   
Sbjct: 629  AVLQILVGPKARNMHKAKQLVCLDACKKLHELGALDDHLCLSVEDPVPE--IVSKNKG-T 685

Query: 688  GAGTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELD 746
            G GTTKRKELHGTT I A SG W  +K  + L +YK NF C    +IYS FVLLI++ L 
Sbjct: 686  GIGTTKRKELHGTTRIHAWSGNWVSKKTALKLQSYKMNFVCDQAGQIYSEFVLLIDATLP 745

Query: 747  NDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSK-SS 805
            ++V   E++LYL  K VK +VSS G + LDA QM +AK FQ L FNGLFGKLF +SK  +
Sbjct: 746  DEVATLEIDLYLHDKMVKTSVSSCGLLELDAQQMEQAKLFQGLLFNGLFGKLFTRSKVPN 805

Query: 806  GSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIK----- 860
              REF L +E   +W+ + +YLLLP    N   D +  INWS I+  A+ V+ ++     
Sbjct: 806  APREFILNKEDTFVWNTASVYLLLP---TNPSFDSNVCINWSVIDAAATAVKLMRRIYSE 862

Query: 861  -EKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGR 919
             ++  LG    + N G                 D+IHLAN S  A +LKDMVVLA+HTG+
Sbjct: 863  NKRELLGIFDSDQNVG-----------------DLIHLANKSCKANSLKDMVVLAVHTGK 905

Query: 920  IYSIVEIVNNSSAESPFDGNTDDDS---KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPH 976
            IY+ ++I    S +S FDG +D      +TF  YF +KYGIVL HP QPLL LK SHNPH
Sbjct: 906  IYTALDI-TELSGDSAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPH 964

Query: 977  NLLVN-FNDGGGSGKGSKSGMN-TKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQR 1034
            NLL + F D G   +   +G     K    VHMPPELL+ +D+P+ +++S YL P++M R
Sbjct: 965  NLLSSKFRDEGNVVENMSNGTPVVNKTSNRVHMPPELLIPLDLPVEILRSFYLFPALMYR 1024

Query: 1035 LESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSC 1094
            +ESL LASQLR EI     N  I S LILEA+TTL C E FSMERLELLGDSVLKYAVSC
Sbjct: 1025 IESLTLASQLRSEIGYSDSN--ISSFLILEAITTLRCSEDFSMERLELLGDSVLKYAVSC 1082

Query: 1095 HLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRP 1154
            HLFL +P K EGQLS+ R   +CN+TL+KLG +R +QGY+RD+AFDPRRW+APGQLS+RP
Sbjct: 1083 HLFLKFPNKDEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRP 1142

Query: 1155 VPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL 1214
             PCEC V + EV  D      D  +V+GK CD GHRWM SKTIADC EA+IGAYY GGGL
Sbjct: 1143 SPCECPVKS-EVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCVEAIIGAYYAGGGL 1201

Query: 1215 IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEA 1274
             AA+ ++KWLGI A++E  L+   I  AS+++Y+P+ N  + +E+K+GY F+VK LL EA
Sbjct: 1202 RAAMAVLKWLGIGAEIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFSVKGLLVEA 1261

Query: 1275 ITHASVQEF---YCYQ-------------------------------------------- 1287
            +TH S QE    YCY+                                            
Sbjct: 1262 LTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFA 1321

Query: 1288 ------NLYKHLQHCSTLLLSQITEYVK-----SFPKPGETTDSGPSMKAPKALGDLLES 1336
                  N +  LQH S LLL QITEYV      S  K    +D  P  K PK LGD++ES
Sbjct: 1322 QVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLP--KGPKVLGDIVES 1379

Query: 1337 IVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKG 1396
            I GA+L+DTKL+LD VW IF+P+LSPIVTP+ LELPP RELIE C   GYFV  NC  +G
Sbjct: 1380 IAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHGYFVGINCRDQG 1439

Query: 1397 EMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDD 1456
            + V A L +QLK+VLLV +G  + RK AK  A+S LLK LE     I K AS T +    
Sbjct: 1440 DTVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLEEKGLIIPKNASKTEQFEKH 1499

Query: 1457 CRQTT--------KEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKG 1508
            C  T           D   P   K +        A DS +      +G P+   +   KG
Sbjct: 1500 CGSTNPFNNLHVDAMDTQTPKPTKEKN-------AADS-RNISDPLLGKPLHVIVKTSKG 1551

Query: 1509 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCE----GLEKRTGFS-SFVSKITLHIP 1563
            GPR +L++LCK + WPMPT E +E    +    C       +K T  + +F S ITLHIP
Sbjct: 1552 GPRIALYELCKKLQWPMPTME-SEKVQPSFSSVCSSPGGSSQKATPQAFAFASTITLHIP 1610

Query: 1564 EFGNVECNGDPRADKKSSFDSAALIMLHELERQGKI 1599
                +   GD RADKKSS DSAAL +L+EL+R+G +
Sbjct: 1611 NADVISLTGDGRADKKSSQDSAALFLLYELQRRGTL 1646


>gi|334185717|ref|NP_001154662.2| protein dicer-like 3 [Arabidopsis thaliana]
 gi|322518661|sp|Q9LXW7.2|DCL3_ARATH RecName: Full=Endoribonuclease Dicer homolog 3; AltName:
            Full=Dicer-like protein 3; Short=AtDCL3
 gi|332644322|gb|AEE77843.1| protein dicer-like 3 [Arabidopsis thaliana]
          Length = 1580

 Score = 1501 bits (3885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 824/1659 (49%), Positives = 1065/1659 (64%), Gaps = 160/1659 (9%)

Query: 6    NSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAV 65
            NSLKR F E+      D  SS      +G              Y+LKV+EVAK RN IAV
Sbjct: 17   NSLKRKFSEIDGDQNLDSVSSPMMTDSNGS-------------YELKVYEVAKNRNIIAV 63

Query: 66   LETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125
            L TG  K+ I   LIK +     S+  K+LIIFLAPTV+LV QQ   IR   + +VEEY+
Sbjct: 64   LGTGIDKSEITKRLIKAMGS---SDTDKRLIIFLAPTVNLVKQQCCEIRALVNLKVEEYF 120

Query: 126  GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP 185
            GAKGVD+W SQ W +E +K+DVLVMTPQILLD LR AFL L++VC ++IDECHH TGNHP
Sbjct: 121  GAKGVDKWTSQRWDEEFSKHDVLVMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGNHP 180

Query: 186  YTKIMKEFYHKSDNKPKVFGMTASPVVRKG-VSSAMDCEGQISELESTLDSQVFTIEDKT 244
            Y K+MKEFYH+S +KPK+FG+TAS V+RKG VSS  +   Q+SELE  +DS++F  E++ 
Sbjct: 181  YAKLMKEFYHESTSKPKIFGLTASAVIRKGIVSSPSNYAAQVSELERLMDSKIFNPEERE 240

Query: 245  EMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHK 304
             +E F  + KE    Y+ S  C  +LK KLE S  KFDASL +LQ    + + +MD+K +
Sbjct: 241  GVEKFATTVKEGPILYNPSPSCSLELKEKLETSHLKFDASLRRLQELGKDSFLNMDNKFE 300

Query: 305  TLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEV 364
            T +K+LS  + +IL+CLD LGLICA+ A ++CLEK+   +EE E Y++ S+ CK FLE++
Sbjct: 301  TYQKRLSIDYREILHCLDNLGLICAHLAAEVCLEKISDTKEESETYKECSMVCKEFLEDI 360

Query: 365  LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI 424
            L  IG  LP  DK  +D   ++  AV  G++S KL EL  L  SF    Q  C+I VERI
Sbjct: 361  LSTIGVYLPQDDKSLVDLQQNHLSAVISGHVSPKLKELFHLLDSFRGDKQKQCLILVERI 420

Query: 425  IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVI 484
            I AKV+ERFVKK   L +L V YLT +  S +    K+Q E+ + F+ GKVNLLF TDV+
Sbjct: 421  ITAKVIERFVKKEASLAYLNVLYLTENNPSTNVSAQKMQIEIPDLFQHGKVNLLFITDVV 480

Query: 485  EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSE 544
            EEG  VP+CS ++ FDLPKT+ SY QS+  A+Q NS+ I+ LERGN KQR+ L D++R E
Sbjct: 481  EEGFQVPDCSCMVCFDLPKTMCSYSQSQKHAKQSNSKSIMFLERGNPKQRDHLHDLMRRE 540

Query: 545  RSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYT 604
                   L +DPEA  LK+C       + V+  G+ V  DS++ +               
Sbjct: 541  ------VLIQDPEAPNLKSCPPPVKNGHGVKEIGSMVIPDSNITV--------------- 579

Query: 605  PKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALND 664
                     +EEA          A  QT+  P SRN+ L         C+KL     L++
Sbjct: 580  ---------SEEA----------ASTQTMSDPPSRNEQLP-------PCKKLR----LDN 609

Query: 665  HLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKC-GVILHAYKF 723
            +LL S     E    SK   S   AG+ KRKELHGTT   ALSG WGE   G    AYKF
Sbjct: 610  NLLQS--NGKEKVASSKSKSSSSAAGSKKRKELHGTTCANALSGTWGENIDGATFQAYKF 667

Query: 724  NFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKA 783
            +F C+I  E+YS F LL+ES L  DVG  E++LYLV K VKA+VS  GQ+ L  +++ KA
Sbjct: 668  DFCCNISGEVYSSFSLLLESTLAEDVGKVEMDLYLVRKLVKASVSPCGQIRLSQEELVKA 727

Query: 784  KCFQELFFNGLFGKLFVKSKSSGS-REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSW 842
            K FQ+ FFNG+FGKLFV SKS G+ REF L+ +T+SLW P++M+LLLP+E  N     S 
Sbjct: 728  KYFQQFFFNGMFGKLFVGSKSQGTKREFLLQTDTSSLWHPAFMFLLLPVE-TNDLA-SSA 785

Query: 843  RINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSV 902
             I+WS IN CAS+VEF+K+ S L     + N  N+S  +           ++IH AN S 
Sbjct: 786  TIDWSAINSCASIVEFLKKNSLLDLRDSDGNQCNTSSGQEVLLDDKMEETNLIHFANASS 845

Query: 903  DAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHP 962
            D  +L+++VV+AIHTGRIYSIVE V++SSA SPF+ +      T+  YF++KYGIVL HP
Sbjct: 846  DKNSLEELVVIAIHTGRIYSIVEAVSDSSAMSPFEVDASSGYATYAEYFNKKYGIVLAHP 905

Query: 963  GQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSG-MNTKKPQMHVHMPPELLVRVDVPISV 1021
             QPL++LKQSH+ HNLLV+FN+        K+G +  +KP +H H+PPELL R+DVP +V
Sbjct: 906  NQPLMKLKQSHHAHNLLVDFNEEMVVKTEPKAGNVRKRKPNIHAHLPPELLARIDVPRAV 965

Query: 1022 VKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLE 1081
            +KS+YLLPSVM RLESLMLASQLREEI+C   NF I S+ ILEA+TTL C ESFSMERLE
Sbjct: 966  LKSIYLLPSVMHRLESLMLASQLREEIDCSIDNFSISSTSILEAVTTLTCPESFSMERLE 1025

Query: 1082 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
            LLGDSVLKY  SCHLFL YP K EGQLS +R   + NS LH+L T RKLQGYIR+ AF+P
Sbjct: 1026 LLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRNGAFEP 1085

Query: 1142 RRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCA 1201
            RRW APGQ SL PVPC+CG+DT EVPLD KFFT++  + +GK CDMGHRW+ SK+++DCA
Sbjct: 1086 RRWTAPGQFSLFPVPCKCGIDTREVPLDPKFFTENMTIKIGKSCDMGHRWVVSKSVSDCA 1145

Query: 1202 EALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKI 1261
            EALIGAYYV GGL A+L+MMKWLGID D + +LV + I R SLR Y+P+ +E+ ++E KI
Sbjct: 1146 EALIGAYYVSGGLSASLHMMKWLGIDVDFDPNLVVEAINRVSLRCYIPKEDELIELERKI 1205

Query: 1262 GYEFTVKFLLQEAITHASVQEFYCYQ---------------------------------- 1287
             +EF+ KFLL+EAITH+S++E Y Y+                                  
Sbjct: 1206 QHEFSAKFLLKEAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLR 1265

Query: 1288 ----------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALG 1331
                            NL+ HLQ C+T+L +QI +Y+ SF KP ET  S PS++ PKALG
Sbjct: 1266 SACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSIQGPKALG 1325

Query: 1332 DLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKEN 1391
            D++ESI GA+LIDT+L+LD+VWR+F+P+LSP+VTPDKL+LPP REL ELCDSLGYF +  
Sbjct: 1326 DVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELCDSLGYFFRVK 1385

Query: 1392 CTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTG 1451
            C+  G    A ++LQL DVLL G+G E++ K A GKAAS LL +LE  ++ IS+  S   
Sbjct: 1386 CSNDGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQLE--KRNISRKTS--- 1440

Query: 1452 KLGDD---------CRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAP 1502
             LGD+         C  + +E L                    + +     ++  P + P
Sbjct: 1441 -LGDNQSSMDVNLACNHSDRETL--------------------TSETTEIQSIVIPFIGP 1479

Query: 1503 INMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHI 1562
            INMKKGGPR +L + CK  LWPMPTF+T+E KSRT   F +G EKRT FSSF S ITL I
Sbjct: 1480 INMKKGGPRGTLHEFCKKHLWPMPTFDTSEEKSRTPFEFIDGGEKRTSFSSFTSTITLRI 1539

Query: 1563 PEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1601
            P    V   G+ R DKKSSFDSA + +L+ELER+  +II
Sbjct: 1540 PNREAVMYAGEARPDKKSSFDSAVVELLYELERRKIVII 1578


>gi|334185719|ref|NP_001154663.2| protein dicer-like 3 [Arabidopsis thaliana]
 gi|332644323|gb|AEE77844.1| protein dicer-like 3 [Arabidopsis thaliana]
          Length = 1570

 Score = 1493 bits (3865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 820/1658 (49%), Positives = 1060/1658 (63%), Gaps = 168/1658 (10%)

Query: 6    NSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAV 65
            NSLKR F E+      D  SS      +G              Y+LKV+EVAK RN IAV
Sbjct: 17   NSLKRKFSEIDGDQNLDSVSSPMMTDSNGS-------------YELKVYEVAKNRNIIAV 63

Query: 66   LETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125
            L TG  K+ I   LIK +     S+  K+LIIFLAPTV+LV QQ   IR   + +VEEY+
Sbjct: 64   LGTGIDKSEITKRLIKAMGS---SDTDKRLIIFLAPTVNLVKQQCCEIRALVNLKVEEYF 120

Query: 126  GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP 185
            GAKGVD+W SQ W +E +K+DVLVMTPQILLD LR AFL L++VC ++IDECHH TGNHP
Sbjct: 121  GAKGVDKWTSQRWDEEFSKHDVLVMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGNHP 180

Query: 186  YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTE 245
            Y K+MKEFYH+S +KPK+FG+TAS V+RK          Q+SELE  +DS++F  E++  
Sbjct: 181  YAKLMKEFYHESTSKPKIFGLTASAVIRKA---------QVSELERLMDSKIFNPEEREG 231

Query: 246  MEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKT 305
            +E F  + KE    Y+ S  C  +LK KLE S  KFDASL +LQ    + + +MD+K +T
Sbjct: 232  VEKFATTVKEGPILYNPSPSCSLELKEKLETSHLKFDASLRRLQELGKDSFLNMDNKFET 291

Query: 306  LRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL 365
             +K+LS  + +IL+CLD LGLICA+ A ++CLEK+   +EE E Y++ S+ CK FLE++L
Sbjct: 292  YQKRLSIDYREILHCLDNLGLICAHLAAEVCLEKISDTKEESETYKECSMVCKEFLEDIL 351

Query: 366  HVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII 425
              IG  LP  DK  +D   ++  AV  G++S KL EL  L  SF    Q  C+I VERII
Sbjct: 352  STIGVYLPQDDKSLVDLQQNHLSAVISGHVSPKLKELFHLLDSFRGDKQKQCLILVERII 411

Query: 426  AAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE 485
             AKV+ERFVKK   L +L V YLT +  S +    K+Q E+ + F+ GKVNLLF TDV+E
Sbjct: 412  TAKVIERFVKKEASLAYLNVLYLTENNPSTNVSAQKMQIEIPDLFQHGKVNLLFITDVVE 471

Query: 486  EGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSER 545
            EG  VP+CS ++ FDLPKT+ SY QS+  A+Q NS+ I+ LERGN KQR+ L D++R E 
Sbjct: 472  EGFQVPDCSCMVCFDLPKTMCSYSQSQKHAKQSNSKSIMFLERGNPKQRDHLHDLMRRE- 530

Query: 546  SVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
                  L +DPEA  LK+C       + V+  G+ V  DS++ +                
Sbjct: 531  -----VLIQDPEAPNLKSCPPPVKNGHGVKEIGSMVIPDSNITV---------------- 569

Query: 606  KPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDH 665
                    +EEA          A  QT+  P SRN+ L         C+KL     L+++
Sbjct: 570  --------SEEA----------ASTQTMSDPPSRNEQLP-------PCKKLR----LDNN 600

Query: 666  LLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKC-GVILHAYKFN 724
            LL S     E    SK   S   AG+ KRKELHGTT   ALSG WGE   G    AYKF+
Sbjct: 601  LLQS--NGKEKVASSKSKSSSSAAGSKKRKELHGTTCANALSGTWGENIDGATFQAYKFD 658

Query: 725  FACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAK 784
            F C+I  E+YS F LL+ES L  DVG  E++LYLV K VKA+VS  GQ+ L  +++ KAK
Sbjct: 659  FCCNISGEVYSSFSLLLESTLAEDVGKVEMDLYLVRKLVKASVSPCGQIRLSQEELVKAK 718

Query: 785  CFQELFFNGLFGKLFVKSKSSGS-REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWR 843
             FQ+ FFNG+FGKLFV SKS G+ REF L+ +T+SLW P++M+LLLP+E  N     S  
Sbjct: 719  YFQQFFFNGMFGKLFVGSKSQGTKREFLLQTDTSSLWHPAFMFLLLPVE-TNDLA-SSAT 776

Query: 844  INWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVD 903
            I+WS IN CAS+VEF+K+ S L     + N  N+S  +           ++IH AN S D
Sbjct: 777  IDWSAINSCASIVEFLKKNSLLDLRDSDGNQCNTSSGQEVLLDDKMEETNLIHFANASSD 836

Query: 904  AKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPG 963
              +L+++VV+AIHTGRIYSIVE V++SSA SPF+ +      T+  YF++KYGIVL HP 
Sbjct: 837  KNSLEELVVIAIHTGRIYSIVEAVSDSSAMSPFEVDASSGYATYAEYFNKKYGIVLAHPN 896

Query: 964  QPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSG-MNTKKPQMHVHMPPELLVRVDVPISVV 1022
            QPL++LKQSH+ HNLLV+FN+        K+G +  +KP +H H+PPELL R+DVP +V+
Sbjct: 897  QPLMKLKQSHHAHNLLVDFNEEMVVKTEPKAGNVRKRKPNIHAHLPPELLARIDVPRAVL 956

Query: 1023 KSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLEL 1082
            KS+YLLPSVM RLESLMLASQLREEI+C   NF I S+ ILEA+TTL C ESFSMERLEL
Sbjct: 957  KSIYLLPSVMHRLESLMLASQLREEIDCSIDNFSISSTSILEAVTTLTCPESFSMERLEL 1016

Query: 1083 LGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR 1142
            LGDSVLKY  SCHLFL YP K EGQLS +R   + NS LH+L T RKLQGYIR+ AF+PR
Sbjct: 1017 LGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRNGAFEPR 1076

Query: 1143 RWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAE 1202
            RW APGQ SL PVPC+CG+DT EVPLD KFFT++  + +GK CDMGHRW+ SK+++DCAE
Sbjct: 1077 RWTAPGQFSLFPVPCKCGIDTREVPLDPKFFTENMTIKIGKSCDMGHRWVVSKSVSDCAE 1136

Query: 1203 ALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIG 1262
            ALIGAYYV GGL A+L+MMKWLGID D + +LV + I R SLR Y+P+ +E+ ++E KI 
Sbjct: 1137 ALIGAYYVSGGLSASLHMMKWLGIDVDFDPNLVVEAINRVSLRCYIPKEDELIELERKIQ 1196

Query: 1263 YEFTVKFLLQEAITHASVQEFYCYQ----------------------------------- 1287
            +EF+ KFLL+EAITH+S++E Y Y+                                   
Sbjct: 1197 HEFSAKFLLKEAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRS 1256

Query: 1288 ---------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGD 1332
                           NL+ HLQ C+T+L +QI +Y+ SF KP ET  S PS++ PKALGD
Sbjct: 1257 ACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSIQGPKALGD 1316

Query: 1333 LLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENC 1392
            ++ESI GA+LIDT+L+LD+VWR+F+P+LSP+VTPDKL+LPP REL ELCDSLGYF +  C
Sbjct: 1317 VVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELCDSLGYFFRVKC 1376

Query: 1393 TLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGK 1452
            +  G    A ++LQL DVLL G+G E++ K A GKAAS LL +LE  ++ IS+  S    
Sbjct: 1377 SNDGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQLE--KRNISRKTS---- 1430

Query: 1453 LGDD---------CRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPI 1503
            LGD+         C  + +E L                    + +     ++  P + PI
Sbjct: 1431 LGDNQSSMDVNLACNHSDRETL--------------------TSETTEIQSIVIPFIGPI 1470

Query: 1504 NMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIP 1563
            NMKKGGPR +L + CK  LWPMPTF+T+E KSRT   F +G EKRT FSSF S ITL IP
Sbjct: 1471 NMKKGGPRGTLHEFCKKHLWPMPTFDTSEEKSRTPFEFIDGGEKRTSFSSFTSTITLRIP 1530

Query: 1564 EFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1601
                V   G+ R DKKSSFDSA + +L+ELER+  +II
Sbjct: 1531 NREAVMYAGEARPDKKSSFDSAVVELLYELERRKIVII 1568


>gi|242059623|ref|XP_002458957.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
 gi|241930932|gb|EES04077.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
          Length = 1651

 Score = 1431 bits (3703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 793/1651 (48%), Positives = 1061/1651 (64%), Gaps = 123/1651 (7%)

Query: 43   NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
            +F PR YQL V+EVA R+NTIA+L+TGAGKTMIAVMLIK   +  K+N  +KLIIFLAPT
Sbjct: 29   DFTPRRYQLDVYEVAMRQNTIAMLDTGAGKTMIAVMLIKHFGKISKANNDRKLIIFLAPT 88

Query: 103  VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
            V LV QQ +VI+ +TDFEVE Y+GAKGVD+W +  WQ++  K  V+VMTPQ+LLDALR+A
Sbjct: 89   VQLVTQQCEVIKSYTDFEVEHYHGAKGVDQWKAHSWQQQFLKYQVMVMTPQVLLDALRQA 148

Query: 163  FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDC 222
            FL LD+V  ++ DECHHATGNHPYT+IMKEFYH S++KP VFGMTASP++RKGVSS +DC
Sbjct: 149  FLILDMVSLMIFDECHHATGNHPYTRIMKEFYHGSEHKPNVFGMTASPIIRKGVSSDLDC 208

Query: 223  EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD 282
            E Q+SELE+ LDS++  + D+ E+E+ VPSAKE  R+Y+       DL  +LE+  SK+D
Sbjct: 209  ENQLSELENILDSKIHAVVDREEIELCVPSAKEVNRYYEPRTVSFEDLSEELEILCSKYD 268

Query: 283  ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK--- 339
              + +L     N YKD D+  K  R++LS   AKI YCL++ GL+CA EA KIC+E+   
Sbjct: 269  GLIVQLHNRSTNQYKDADEITKESRRRLSKSLAKICYCLEDAGLLCASEATKICIERGQR 328

Query: 340  --VLKAQEECE----------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
               LK   +            ++ + S+    F +EVL +I   L       L+      
Sbjct: 329  KGWLKGGSDTTDQQSDPNGPILFAEISMLHMKFFQEVLDIIDKRLQQGIDALLNSESGCV 388

Query: 388  KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAY 447
            +A  +GYIS KL+EL+++FLSF  S  V C+IFV+R I+A+V+ER +KK+  L+   V++
Sbjct: 389  EAAKMGYISPKLYELMRVFLSFSDSDNVRCLIFVDRKISARVIERTMKKIGRLSCFRVSF 448

Query: 448  LTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
            LTG ++SVDALTPK+QK+ L+SFR GKVNLLF TDV EEG+H+P+CS VIRFDLP+T  S
Sbjct: 449  LTGGSSSVDALTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIHIPDCSCVIRFDLPRTTRS 508

Query: 508  YIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYV 567
            Y+QSRGRARQ +SQ+ILM+E+GN+KQ + +  I+RS+ S+T+ A +R+PE          
Sbjct: 509  YVQSRGRARQRDSQYILMIEKGNVKQSDLISRIMRSKTSMTEIASNREPEDSHRNFFPIE 568

Query: 568  KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSN 627
            +   Y + +TGA +TTDSS++++++YC+ LP DKYYTP+P F++    + YEC +TLPS+
Sbjct: 569  EINEYHISTTGAKITTDSSISVLNQYCDKLPKDKYYTPRPTFQFTHYGDGYECTVTLPSS 628

Query: 628  APFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLP 687
            A FQ +VGP +RN   +KQLVCL+AC++LHQ+GAL+DHL PSVEE     L      S+ 
Sbjct: 629  AMFQLLVGPKARNMQKAKQLVCLDACKRLHQLGALDDHLSPSVEETP---LEISSKSSIS 685

Query: 688  GAGTTKRKELHGTTPIRALSGRWG-EKCGVILHAYKFNFACSIVTEIYSGFVLLIESELD 746
             +GTTKRKELHGTT + ++SG WG +K    L  YK NF C  V + Y  FVLLI++ + 
Sbjct: 686  TSGTTKRKELHGTTKVLSMSGSWGSDKSVTKLQGYKLNFVCDQVDQKYCDFVLLIDTSIA 745

Query: 747  NDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG 806
             +     ++LYL  K VKA+VS  G + LDA QM K K FQ L FNGLFGKLF+ SK+S 
Sbjct: 746  KEAATLNIDLYLHDKMVKASVSPCGPLELDARQMEKTKLFQALLFNGLFGKLFIGSKASK 805

Query: 807  S-REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFL 865
            + REF LK++   LW+   MYLLLP++        S  INWS ++  A+ V  ++     
Sbjct: 806  TPREFILKKDDAFLWNKENMYLLLPVDSTQD-SHKSVCINWSIVDIAATTVGLMRSIYSD 864

Query: 866  GAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVE 925
            G     +   +             + ++ I LAN S  A +LK+MVVLAIHTG+IY++++
Sbjct: 865  GKHNLKDKLNHEK-----------NDENFIRLANKSCKADDLKNMVVLAIHTGKIYTVLK 913

Query: 926  IVNNSSAESPFDGNTDDDS---KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNF 982
             V++  A S FDG +D      +TF  YF +KY I L HP QPLL LK +HNPHNLL + 
Sbjct: 914  -VSDLCANSKFDGTSDKKEAKFQTFAEYFEKKYNIFLCHPLQPLLVLKPTHNPHNLLSSK 972

Query: 983  NDGGGSGKGSKSGM--NTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLML 1040
            N   G        +  N  +    VHMPPELL+ +D+P+ V++  YL PS+M RLESLML
Sbjct: 973  NRDEGIILFFVGNVVENKNRANSLVHMPPELLIPLDLPVDVLRVFYLFPSLMHRLESLML 1032

Query: 1041 ASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTY 1100
            ASQLR EI     +  I S +ILEA+TTL CCE FSMERLELLGDSVLKYAVS HLF+T+
Sbjct: 1033 ASQLRSEIAYTDSD--ISSFVILEAITTLRCCEDFSMERLELLGDSVLKYAVSAHLFMTF 1090

Query: 1101 PKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECG 1160
              KHEGQLS+RR   +CN+TL++LGT+R++QGYIRD+AFDPRRW+APGQLS RP PCEC 
Sbjct: 1091 LNKHEGQLSSRRQETICNATLYRLGTERRIQGYIRDAAFDPRRWLAPGQLSSRPCPCECP 1150

Query: 1161 VDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYM 1220
            V + EV  +      D  +++GK CD GHRW+ SKTI+DC EA+IGAYYV GGL AA  +
Sbjct: 1151 VKS-EVITEDIHRIDDKSIIIGKACDKGHRWICSKTISDCVEAIIGAYYVEGGLKAAFAV 1209

Query: 1221 MKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASV 1280
            +KWL I+  LE   + + ++ AS+R+Y+P+++ ++ +E+K+GY F VK LL EA+TH S 
Sbjct: 1210 LKWLQIET-LEEEQIMEALSSASVRNYLPKVDVVEFLEAKLGYTFQVKGLLIEALTHPSQ 1268

Query: 1281 QE---FYCYQ-------------------------------------------------- 1287
            QE    YCYQ                                                  
Sbjct: 1269 QESGATYCYQRLEFLGDAVLDILITRHLFLSHKDTDEGELTDLRSASVNNENFAQVAVKH 1328

Query: 1288 NLYKHLQHCSTLLLSQITEYVKSFPKPGETTD------SGPSMKAPKALGDLLESIVGAV 1341
            NL++ LQH S  L  QITEYV S    G + D      SGPS + PK LGD++ESI GA+
Sbjct: 1329 NLHQFLQHSSGFLQDQITEYVNSL--EGSSMDRTSLLSSGPS-RGPKVLGDIVESIAGAI 1385

Query: 1342 LIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHA 1401
            LID+KL+LD VWR+FKP+LSPIVTP+ LELPP REL E CD  GYF+   C  +G+   A
Sbjct: 1386 LIDSKLDLDLVWRVFKPLLSPIVTPENLELPPFRELNEWCDKNGYFIGIKCENRGDKTTA 1445

Query: 1402 ELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGAS-------NTGKLG 1454
             L LQLKD+LLV +G  +++  AK  AAS LL+ LE     I K AS       N+G   
Sbjct: 1446 ILSLQLKDLLLVRQGCGKNKIDAKAHAASLLLRDLEEKGLIIPKNASRVEQFEKNSGT-R 1504

Query: 1455 DDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSL 1514
            + C         +  +  RQK    +  A  S        +  P+V  + + KGGPR SL
Sbjct: 1505 NHCNNLVDVMDTQNVAPPRQKELPVSSTAPGS-------VLDKPLVVKVKLSKGGPRVSL 1557

Query: 1515 FQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFS----SFVSKITLHIPEFGNVEC 1570
            ++ CK + WPMP FE  + + + + V     +     +    +F S ITLHIP    +  
Sbjct: 1558 YESCKKLQWPMPMFEFVKVEPKNISVCSSSGDSSQKVAPQGYAFASTITLHIPNGDIISL 1617

Query: 1571 NGDPRADKKSSFDSAALIMLHELERQGKIII 1601
             GD RADKKSS DSAAL+ML+EL+R+G+  +
Sbjct: 1618 TGDGRADKKSSQDSAALLMLYELQRRGRFQV 1648


>gi|297815500|ref|XP_002875633.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297321471|gb|EFH51892.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1521

 Score = 1421 bits (3679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 783/1607 (48%), Positives = 1019/1607 (63%), Gaps = 177/1607 (11%)

Query: 49   YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
            Y+LKV+EVAK RN IAVL TG  K++I  MLIK +     S+  K+LIIFLAPTV++   
Sbjct: 36   YELKVYEVAKNRNIIAVLGTGIDKSVITKMLIKAMGC---SDTDKRLIIFLAPTVNI--- 89

Query: 109  QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDV-LVMTPQILLDALRKAFLSLD 167
            Q   IR   + +VEEY+GAKGVD+W SQ W +E++K+DV LVMTPQILLDALR AFL L+
Sbjct: 90   QCCEIRAQVNLKVEEYFGAKGVDKWTSQRWDEEVSKHDVSLVMTPQILLDALRSAFLKLE 149

Query: 168  IVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQIS 227
            +VC +++DECH  TGNHPY K+MK                                    
Sbjct: 150  MVCLLILDECHRTTGNHPYAKLMK------------------------------------ 173

Query: 228  ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSK 287
                     +F  E+   +E F  + KE   FYD S F   +LK KLE S  KFD SL +
Sbjct: 174  ---------IFNSEEGKGVEKFAKAVKEGPIFYDPSPFRSLELKEKLETSHLKFDTSLRR 224

Query: 288  LQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEEC 347
            LQ  +   + ++D+K +T +K+LS  + +IL+CLD LGLICA+ A ++CLEK+   +EE 
Sbjct: 225  LQELEKGSFLNIDNKFETYQKRLSIDYKEILHCLDNLGLICAHLAAEVCLEKISDTKEES 284

Query: 348  EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFL 407
            E Y++ S+ CK FLE++L  IG  L   DK  +D   +   AV+ G++S KL EL  L  
Sbjct: 285  ETYKEWSMVCKEFLEDILSTIGVYLQQGDKNSVDLQQNRLSAVNSGHVSPKLKELFHLLD 344

Query: 408  SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVL 467
            SF    Q  C+I VERII A+V+ERFVKK   L++L V YL G+  S +A   K Q E+ 
Sbjct: 345  SFRGEKQKQCLILVERIITAEVIERFVKKEASLSYLNVLYLVGNNLSTNASAQKTQIEIP 404

Query: 468  ESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE 527
              F  GKVNLLF TD +EEG  VPNCS ++ FDLPKTV SY QS+  A+Q NS+ I+ LE
Sbjct: 405  NLFHEGKVNLLFITDAVEEGFQVPNCSCMVCFDLPKTVCSYSQSQEHAKQSNSKSIMFLE 464

Query: 528  RGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSV 587
            RGN KQR+ L+D++R E  +      RDPEA  LK+C    T ++ V+  G  V  DS++
Sbjct: 465  RGNPKQRDHLYDLMRREVPI------RDPEAPNLKSCPPPVTNAHGVKEIGTMVIPDSNI 518

Query: 588  NLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQL 647
             +                        +EEA          A  QT++ P SRN+ L    
Sbjct: 519  TV------------------------SEEA----------ASTQTMIDPPSRNEQLP--- 541

Query: 648  VCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALS 707
                 C+KL     L+++LL S     E    SK   S   AG+ KRKELHGTT   ALS
Sbjct: 542  ----PCKKLR----LDNNLLQS--NAKEKVASSKSKSSSSAAGSKKRKELHGTTCANALS 591

Query: 708  GRWGEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKAT 766
            G WGE   G I  AYKF+F C+I  E+YS F LL+ES L  DVGN E++LYLV K VKA+
Sbjct: 592  GTWGENIDGAIFQAYKFDFCCNISGEVYSSFSLLLESTLAEDVGNVEMDLYLVRKLVKAS 651

Query: 767  VSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGS-REFFLKRETNSLWSPSYM 825
            VS  GQ+ L  +++ K K FQ+ FFNG+FGKLFV SKS G+ REF L+ +T+SLW PS+M
Sbjct: 652  VSPCGQIRLSQEELVKGKYFQQFFFNGMFGKLFVGSKSQGTKREFLLQTDTSSLWHPSFM 711

Query: 826  YLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPC 885
            +LLLP+E  +     +  I+WS IN CAS+VEF+K+ S L     + N  N+S  +    
Sbjct: 712  FLLLPVETKDLASSAT--IDWSAINSCASIVEFLKKNSLLELQVSDGNQCNTSSDQEVLL 769

Query: 886  KTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSK 945
                   ++IH AN S D  +L+++VV+AIHTGRIYSIVE V +SSA SPF+ +   +  
Sbjct: 770  DDKMEETNLIHFANASSDKNSLEELVVIAIHTGRIYSIVEAVRDSSALSPFECDASSEYA 829

Query: 946  TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSG-MNTKKPQMH 1004
            T+  YF++KYGIVL HP QPL++LKQSH+ HNLLV+FN+        K+G +  KKP +H
Sbjct: 830  TYAEYFNKKYGIVLAHPNQPLMKLKQSHHAHNLLVDFNEEMVVKAEPKAGNVRKKKPNIH 889

Query: 1005 VHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILE 1064
             H+PPELL R+DVP +V+KS+YLLPSVM RLESLMLASQLREEI+C   NF I S+ ILE
Sbjct: 890  AHLPPELLARIDVPRAVLKSIYLLPSVMHRLESLMLASQLREEIDCSIDNFSISSTSILE 949

Query: 1065 ALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL 1124
            A+TTL C E+FSMERLELLGDSVLKY  SC+LFL YP K EGQLS +R   + NS LH+L
Sbjct: 950  AVTTLTCPEAFSMERLELLGDSVLKYVASCYLFLKYPDKDEGQLSRQRQSIISNSNLHRL 1009

Query: 1125 GTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP 1184
             T+RKLQGYIR+ AF+PRRW APGQ SL PVPC+CG+DT EVPLD KFFT++  + +GK 
Sbjct: 1010 ATNRKLQGYIRNGAFEPRRWTAPGQFSLFPVPCKCGIDTREVPLDPKFFTENMTIKIGKS 1069

Query: 1185 CDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASL 1244
            CDMGHRW  SK+++DCAEALIGAYYV GGL A+L+MMKWLG++ D + +LV + I+R SL
Sbjct: 1070 CDMGHRWTVSKSVSDCAEALIGAYYVSGGLTASLHMMKWLGVNVDFDPNLVVEAISRVSL 1129

Query: 1245 RSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQ----------------- 1287
            R Y+P+ +E+ ++E KI +EF+ KFLL+EAITH+SV E Y Y+                 
Sbjct: 1130 RCYIPKDDELTELERKIQHEFSAKFLLKEAITHSSVHESYSYERLEFLGDSVLDFLITRH 1189

Query: 1288 ---------------------------------NLYKHLQHCSTLLLSQITEYVKSFPKP 1314
                                             NL+ HLQ C+T+L +QI EY+ SF KP
Sbjct: 1190 LFNTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHIHLQRCATVLENQINEYLMSFQKP 1249

Query: 1315 GETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPL 1374
             ET  S PS++ PKALGD++ESI GA+LIDT+L+LD+VWR+F+P+LSP+VTPDKL+LPP 
Sbjct: 1250 DETGRSIPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPY 1309

Query: 1375 RELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLK 1434
            REL ELCDSLGYF +E C+  G    A + LQL DVLL G+G E++ K A GKAAS LL 
Sbjct: 1310 RELNELCDSLGYFFREKCSNDGVKAQATIHLQLGDVLLTGDGSEQTNKLALGKAASHLLT 1369

Query: 1435 KLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMT 1494
            +LE  ++ IS+  S    +GD+     +  +    +C     ++   P  DS +     +
Sbjct: 1370 QLE--KRNISRKIS----IGDN-----QSSMDVNLACNH---SDRETPTSDSIE---IQS 1412

Query: 1495 VGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSF 1554
            +  PV+ PIN KKGGPR +L + CK  LWP PTF+T+E KSRT   F +G EKRT FSSF
Sbjct: 1413 IVIPVIGPINTKKGGPRGTLHEFCKKHLWPTPTFDTSEEKSRTPFEFTDGDEKRTSFSSF 1472

Query: 1555 VSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1601
             S ITL IP  G V   G+ R DKKSSFDSA + +L+ELER+  + I
Sbjct: 1473 TSTITLRIPNRGAVMYAGEARPDKKSSFDSAVVELLYELERRKIVTI 1519


>gi|251764789|sp|Q7XD96.2|DCL3B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3b; AltName:
            Full=Dicer-like protein 3b; Short=OsDCL3b
          Length = 1637

 Score = 1421 bits (3679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 779/1632 (47%), Positives = 1051/1632 (64%), Gaps = 102/1632 (6%)

Query: 35   PSSSTNSINFIPRIYQL-KVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN-GF 92
            P  S  + +  PR  QL +VFE A R NTIAVL+TG+GKTM+AVML ++ A+ +++    
Sbjct: 27   PRGSRPTADTTPRTSQLVEVFEAALRGNTIAVLDTGSGKTMVAVMLAREHARRVRAGEAP 86

Query: 93   KKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTP 152
            +++++FLAPTVHLVHQQ++VIR +TD +V    GA  V EW +  W++E+ +N+++VMTP
Sbjct: 87   RRIVVFLAPTVHLVHQQFEVIREYTDLDVMMCSGASRVGEWGADHWKEEVGRNEIVVMTP 146

Query: 153  QILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVV 212
            QILLDALR AFL++  V  ++ DECH A G+HPY +IMKEFY  S  +P VFGMTASPV 
Sbjct: 147  QILLDALRHAFLTMSAVSLLIFDECHRACGSHPYARIMKEFYFGSQWRPDVFGMTASPVA 206

Query: 213  RKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
             KG S+  +CE  IS+LE TLD++++ +ED+ E+E F P      ++YD       +LK 
Sbjct: 207  TKGASTLHNCEAHISQLELTLDAKIYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLKS 266

Query: 273  KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            KL++   +FD+ L  LQ S  N +KD D+  +T RK LS YH KILY L++LG I   E 
Sbjct: 267  KLQIFSDEFDSLLVGLQESPSNKFKDTDNILETSRKSLSRYHGKILYSLNDLGPIITSEV 326

Query: 333  VKICLEKV--LKAQEECEIYRQSSL--QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
            VKI +E V  L   E+C I+ ++SL     YF +E L +I   LP      +       +
Sbjct: 327  VKIHIESVKPLCDSEDC-IFSKASLCLHMSYF-KEALSLIEEILPQGYGELMKSESGSEE 384

Query: 389  AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYL 448
                GYIS+K++ L+ +F SFG S +VLC+IFV+RII AK VERF++ +   +  +++YL
Sbjct: 385  LTKRGYISSKVNTLINIFKSFGSSNEVLCLIFVDRIITAKAVERFMRGIVNFSCFSISYL 444

Query: 449  TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
            TG +TS DAL+P VQ+  L+ FR GKVNLLF TDV EEG+ VPNCS VIRFDLP+TV SY
Sbjct: 445  TGGSTSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRFDLPRTVCSY 504

Query: 509  IQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVK 568
            +QSRGRAR++NS+FILM+ERGNL+Q+  +F +I++   V + AL R P A      +   
Sbjct: 505  VQSRGRARRNNSEFILMIERGNLQQQEHIFRMIQTGYYVKNCALYRHPNALSYDL-SIQG 563

Query: 569  TKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNA 628
              +Y V+STGA++T D  VNLI +YCE LP D+Y+ PKP F+    +  ++C LTLP NA
Sbjct: 564  MYTYQVQSTGATITADCCVNLIRKYCEKLPKDRYFMPKPSFEVTIEDGLFKCTLTLPRNA 623

Query: 629  PFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPG 688
             FQ+IVGP S + NLSKQLV LEAC+KLHQ+G LNDHL+P  EEP + +  +   + + G
Sbjct: 624  AFQSIVGPLSSSSNLSKQLVSLEACKKLHQLGELNDHLVPLTEEPMDTDFTTADEKCISG 683

Query: 689  AGTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDN 747
             GTTKRKELHGTT + ALSG W  +   + L+ Y+ +F C    E Y+GFVLL+E ELD+
Sbjct: 684  PGTTKRKELHGTTCVLALSGTWIHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELDD 743

Query: 748  DVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG 806
            DV   +++L+L+ +K V  TV+  G+V L+  Q+ K K FQE FFNG+FG+LF  S+ SG
Sbjct: 744  DVAPSKMDLFLIPNKMVYTTVTPRGKVQLNKKQLGKGKLFQEFFFNGIFGRLFHGSRKSG 803

Query: 807  S-REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFL 865
            + R+F  K+     W+   MYLLLPL   +   D    I+W  I  CA  VE +   S+ 
Sbjct: 804  AQRDFIFKKGHEIQWNTESMYLLLPLRDSSYIQD-DLSIHWEAIESCAGAVEQLW-SSYQ 861

Query: 866  GAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVE 925
            G         N  P    P K     +++IHLAN S+   ++KD VVL++HTGRIY++++
Sbjct: 862  GDE-------NVIPVNCIPQKRRGGQEEIIHLANKSLHCSSIKDSVVLSLHTGRIYTVLD 914

Query: 926  IVNNSSAESPFDGNTDDDSK---TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL--- 979
            ++ +++AE  FD      +    +FV+Y+ +KYGI++ HP QPLL LKQSHN HNLL   
Sbjct: 915  LILDTTAEDSFDEMCKGKASPFTSFVDYYHQKYGIIIQHPEQPLLLLKQSHNAHNLLFSK 974

Query: 980  VNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLM 1039
            + + DG  +GK     +  +K Q+H  +PPELL+ +DV   ++KS YLLPSV+ RL+SLM
Sbjct: 975  LKYLDGS-TGKP----LLMEKEQIHARVPPELLIHLDVTTDILKSFYLLPSVIHRLQSLM 1029

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            LASQLR EI     N HIP +LILEA+TTL CCE+FS+ERLELLGDSVLKY V C LFL 
Sbjct: 1030 LASQLRREIG---YNQHIPVTLILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLR 1086

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCEC 1159
            YP KHEGQLS  RS AVCN+TLHK G  R LQGY+RD+AFDPRRWVAPGQ+SLRP PC C
Sbjct: 1087 YPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNC 1146

Query: 1160 GVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALY 1219
            G++T  VP   ++   D    VGKPCD GHRWM SKTI+DC EAL+GAYYVGGG+ AAL+
Sbjct: 1147 GIETAFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALW 1206

Query: 1220 MMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
            +M+W GID   ++ L+ +    AS    + +IN+I+++E+K+ Y F+VK LL EAITH S
Sbjct: 1207 VMRWFGIDIKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPS 1266

Query: 1280 VQEF---YCYQ------------------------------------------------- 1287
            +QE    YCYQ                                                 
Sbjct: 1267 LQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVR 1326

Query: 1288 -NLYKHLQHCSTLLLSQITEYVKS-FPKPGETTD--SGPSMKAPKALGDLLESIVGAVLI 1343
             N++ HLQH S +LL QITEYV+S     G+ ++     + K PK LGD++ESI GAV I
Sbjct: 1327 NNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFI 1386

Query: 1344 DTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAEL 1403
            DT  N+D VW IF+P+LSP++TPDKL LPP REL+ELC  +G F+   CT KGE V  E+
Sbjct: 1387 DTDFNVDMVWEIFEPLLSPLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEEVIIEM 1446

Query: 1404 RLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKE 1463
             LQL+D LLV +G +R++K AK KAAS++L  L+     I +  S   +L D      + 
Sbjct: 1447 SLQLRDELLVAQGHDRNKKRAKAKAASRILADLKQQGLSIKQCLSKAKQL-DIVTSDLQF 1505

Query: 1464 DLPEPPSCKRQKGTEAAIP-AGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTML 1522
            DL          GT+ +     D        +V   VV P+ M+KGGPR++LF+LCK + 
Sbjct: 1506 DLT-------SSGTQLSYSDLNDYHILEGLSSVKKEVVLPLKMEKGGPRSALFKLCKILQ 1558

Query: 1523 WPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSF 1582
            WPMP FE  E + RT +V  +G    T F+SFVS ITLHIP+   +   G+ R DKKS+ 
Sbjct: 1559 WPMPEFEFVEQRFRTPIVM-DG-ATTTNFNSFVSTITLHIPDATTITFQGERRTDKKSAQ 1616

Query: 1583 DSAALIMLHELE 1594
            DSA+L+MLH+L+
Sbjct: 1617 DSASLMMLHKLQ 1628


>gi|15229816|ref|NP_189978.1| protein dicer-like 3 [Arabidopsis thaliana]
 gi|7594553|emb|CAB88120.1| putative protein [Arabidopsis thaliana]
 gi|94450858|gb|ABF19799.1| dicer-like 3 [Arabidopsis thaliana]
 gi|332644321|gb|AEE77842.1| protein dicer-like 3 [Arabidopsis thaliana]
          Length = 1531

 Score = 1418 bits (3671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 798/1658 (48%), Positives = 1028/1658 (62%), Gaps = 207/1658 (12%)

Query: 6    NSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAV 65
            NSLKR F E+      D  SS      +G              Y+LKV+EVAK RN IAV
Sbjct: 17   NSLKRKFSEIDGDQNLDSVSSPMMTDSNGS-------------YELKVYEVAKNRNIIAV 63

Query: 66   LETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125
            L TG  K+ I   LIK +     S+  K+LIIFLAPTV+L   Q   IR   + +VEEY+
Sbjct: 64   LGTGIDKSEITKRLIKAMGS---SDTDKRLIIFLAPTVNL---QCCEIRALVNLKVEEYF 117

Query: 126  GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP 185
            GAKGVD+W SQ W +E +K+DVLVMTPQILLD LR AFL L++VC ++IDECHH TGNHP
Sbjct: 118  GAKGVDKWTSQRWDEEFSKHDVLVMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGNHP 177

Query: 186  YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTE 245
            Y K+MK F               +P  R+GV                             
Sbjct: 178  YAKLMKIF---------------NPEEREGV----------------------------- 193

Query: 246  MEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKT 305
             E F  + KE    Y+ S  C  +LK KLE S  KFDASL +LQ    + + +MD+K +T
Sbjct: 194  -EKFATTVKEGPILYNPSPSCSLELKEKLETSHLKFDASLRRLQELGKDSFLNMDNKFET 252

Query: 306  LRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL 365
             +K+LS  + +IL+CLD LGLICA+ A ++CLEK+   +EE E Y++ S+ CK FLE++L
Sbjct: 253  YQKRLSIDYREILHCLDNLGLICAHLAAEVCLEKISDTKEESETYKECSMVCKEFLEDIL 312

Query: 366  HVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII 425
              IG  LP  DK  +D   ++  AV  G++S KL EL  L  SF    Q  C+I VERII
Sbjct: 313  STIGVYLPQDDKSLVDLQQNHLSAVISGHVSPKLKELFHLLDSFRGDKQKQCLILVERII 372

Query: 426  AAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE 485
             AKV+ERFVKK   L +L V YLT +  S +    K+Q E+ + F+ GKVNLLF TDV+E
Sbjct: 373  TAKVIERFVKKEASLAYLNVLYLTENNPSTNVSAQKMQIEIPDLFQHGKVNLLFITDVVE 432

Query: 486  EGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSER 545
            EG  VP+CS ++ FDLPKT+ SY QS+  A+Q NS+ I+ LERGN KQR+ L D++R E 
Sbjct: 433  EGFQVPDCSCMVCFDLPKTMCSYSQSQKHAKQSNSKSIMFLERGNPKQRDHLHDLMRRE- 491

Query: 546  SVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
                  L +DPEA  LK+C       + V+  G+ V  DS++ +                
Sbjct: 492  -----VLIQDPEAPNLKSCPPPVKNGHGVKEIGSMVIPDSNITV---------------- 530

Query: 606  KPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDH 665
                    +EEA          A  QT+  P SRN+ L         C+KL     L+++
Sbjct: 531  --------SEEA----------ASTQTMSDPPSRNEQLP-------PCKKLR----LDNN 561

Query: 666  LLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKC-GVILHAYKFN 724
            LL S     E    SK   S   AG+ KRKELHGTT   ALSG WGE   G    AYKF+
Sbjct: 562  LLQS--NGKEKVASSKSKSSSSAAGSKKRKELHGTTCANALSGTWGENIDGATFQAYKFD 619

Query: 725  FACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAK 784
            F C+I  E+YS F LL+ES L  DVG  E++LYLV K VKA+VS  GQ+ L  +++ KAK
Sbjct: 620  FCCNISGEVYSSFSLLLESTLAEDVGKVEMDLYLVRKLVKASVSPCGQIRLSQEELVKAK 679

Query: 785  CFQELFFNGLFGKLFVKSKSSGS-REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWR 843
             FQ+ FFNG+FGKLFV SKS G+ REF L+ +T+SLW P++M+LLLP+E  N     S  
Sbjct: 680  YFQQFFFNGMFGKLFVGSKSQGTKREFLLQTDTSSLWHPAFMFLLLPVE-TNDLA-SSAT 737

Query: 844  INWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVD 903
            I+WS IN CAS+VEF+K+ S L     + N  N+S  +           ++IH AN S D
Sbjct: 738  IDWSAINSCASIVEFLKKNSLLDLRDSDGNQCNTSSGQEVLLDDKMEETNLIHFANASSD 797

Query: 904  AKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPG 963
              +L+++VV+AIHTGRIYSIVE V++SSA SPF+ +      T+  YF++KYGIVL HP 
Sbjct: 798  KNSLEELVVIAIHTGRIYSIVEAVSDSSAMSPFEVDASSGYATYAEYFNKKYGIVLAHPN 857

Query: 964  QPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSG-MNTKKPQMHVHMPPELLVRVDVPISVV 1022
            QPL++LKQSH+ HNLLV+FN+        K+G +  +KP +H H+PPELL R+DVP +V+
Sbjct: 858  QPLMKLKQSHHAHNLLVDFNEEMVVKTEPKAGNVRKRKPNIHAHLPPELLARIDVPRAVL 917

Query: 1023 KSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLEL 1082
            KS+YLLPSVM RLESLMLASQLREEI+C   NF I S+ ILEA+TTL C ESFSMERLEL
Sbjct: 918  KSIYLLPSVMHRLESLMLASQLREEIDCSIDNFSISSTSILEAVTTLTCPESFSMERLEL 977

Query: 1083 LGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR 1142
            LGDSVLKY  SCHLFL YP K EGQLS +R   + NS LH+L T RKLQGYIR+ AF+PR
Sbjct: 978  LGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRNGAFEPR 1037

Query: 1143 RWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAE 1202
            RW APGQ SL PVPC+CG+DT EVPLD KFFT++  + +GK CDMGHRW+ SK+++DCAE
Sbjct: 1038 RWTAPGQFSLFPVPCKCGIDTREVPLDPKFFTENMTIKIGKSCDMGHRWVVSKSVSDCAE 1097

Query: 1203 ALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIG 1262
            ALIGAYYV GGL A+L+MMKWLGID D + +LV + I R SLR Y+P+ +E+ ++E KI 
Sbjct: 1098 ALIGAYYVSGGLSASLHMMKWLGIDVDFDPNLVVEAINRVSLRCYIPKEDELIELERKIQ 1157

Query: 1263 YEFTVKFLLQEAITHASVQEFYCYQ----------------------------------- 1287
            +EF+ KFLL+EAITH+S++E Y Y+                                   
Sbjct: 1158 HEFSAKFLLKEAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRS 1217

Query: 1288 ---------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGD 1332
                           NL+ HLQ C+T+L +QI +Y+ SF KP ET  S PS++ PKALGD
Sbjct: 1218 ACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSIQGPKALGD 1277

Query: 1333 LLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENC 1392
            ++ESI GA+LIDT+L+LD+VWR+F+P+LSP+VTPDKL+LPP REL ELCDSLGYF +  C
Sbjct: 1278 VVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELCDSLGYFFRVKC 1337

Query: 1393 TLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGK 1452
            +  G    A ++LQL DVLL G+G E++ K A GKAAS LL +LE  ++ IS+  S    
Sbjct: 1338 SNDGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQLE--KRNISRKTS---- 1391

Query: 1453 LGDD---------CRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPI 1503
            LGD+         C  + +E L                    + +     ++  P + PI
Sbjct: 1392 LGDNQSSMDVNLACNHSDRETL--------------------TSETTEIQSIVIPFIGPI 1431

Query: 1504 NMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIP 1563
            NMKKGGPR +L + CK  LWPMPTF+T+E KSRT   F +G EKRT FSSF S ITL IP
Sbjct: 1432 NMKKGGPRGTLHEFCKKHLWPMPTFDTSEEKSRTPFEFIDGGEKRTSFSSFTSTITLRIP 1491

Query: 1564 EFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1601
                V   G+ R DKKSSFDSA + +L+ELER+  +II
Sbjct: 1492 NREAVMYAGEARPDKKSSFDSAVVELLYELERRKIVII 1529


>gi|242039323|ref|XP_002467056.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
 gi|241920910|gb|EER94054.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
          Length = 1586

 Score = 1327 bits (3433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 728/1623 (44%), Positives = 1011/1623 (62%), Gaps = 156/1623 (9%)

Query: 46   PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD-IAQAIKSNGFKKLIIFLAPTVH 104
            PR YQ++VF  A R NTIAVL+TG+GKTM+A+ML ++ + +A      +++++FLAPTVH
Sbjct: 26   PRGYQVEVFAAALRGNTIAVLDTGSGKTMVAIMLAREHVLRARAGETPRRIVVFLAPTVH 85

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LVHQQ++VIR +TD +  E +GA GV +W+++ W++ I   +++VMTPQILLDALR AFL
Sbjct: 86   LVHQQFEVIREYTDLDAVECHGASGVGDWNAKRWKEAIGSKEIVVMTPQILLDALRHAFL 145

Query: 165  SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEG 224
            ++ ++  ++ DECH A GNHPY++IMKEFY  S+ +P +FGMTASPV ++G S+  DCE 
Sbjct: 146  TMCVMSLLIFDECHRACGNHPYSRIMKEFYIDSEWRPAIFGMTASPVSKRGASTIEDCEA 205

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
            QI++LE  L+++V+ +ED+ E+E F   AK   ++YD   F                   
Sbjct: 206  QIAQLELVLNAKVYIVEDRNELESFSTGAKIVNKYYDPYLF------------------- 246

Query: 285  LSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV--LK 342
                         D+DD    L+                       E VKI  E +  + 
Sbjct: 247  -------------DLDDLESKLQMLFE-------------------EVVKIYNESINTVG 274

Query: 343  AQEECEIYRQS-SLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHE 401
              E+C   + S +LQ  YF +E L +I   LP      +      ++    GY+S+K+  
Sbjct: 275  DSEDCLFSKASLNLQVSYF-KEALFLIEEFLPQGYGELMKSESGSAELTKRGYVSSKVQT 333

Query: 402  LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPK 461
            L+ +F SFG S +VLC+IFVERI+ AK VERF++     +  +++YLTG +TS D+L+P 
Sbjct: 334  LINIFKSFGSSEEVLCMIFVERIMTAKAVERFMRGNVNFSRFSISYLTGGSTSKDSLSPA 393

Query: 462  VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            VQ+  L+ FR GKVNLLF TDV EEG+ VPNCS VIRFDLP+TV SY+QSRGRAR+ +S 
Sbjct: 394  VQRFTLDLFRAGKVNLLFTTDVTEEGIDVPNCSCVIRFDLPRTVCSYVQSRGRARRSSSS 453

Query: 522  FILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASV 581
            ++LM+ERGNL Q+  +F IIR+E  V   AL + P    L      K   Y VESTGA++
Sbjct: 454  YVLMIERGNLVQQEHIFRIIRTEYYVKTFALHKQPNTPSLDLPLQEKYM-YHVESTGATI 512

Query: 582  TTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNK 641
            T +  VNLI++YCE LP D+YY PKP F+    + +Y+C LT+P NA F++IVGP S   
Sbjct: 513  TAECCVNLIYKYCEKLPKDRYYLPKPCFEVGLKDGSYQCALTMPPNAAFRSIVGPPSSTC 572

Query: 642  NLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTT 701
            NL+KQLVCLEAC+KLH++G L+DHL+P  EEP + +  +   + + G GTTKRKELHG  
Sbjct: 573  NLAKQLVCLEACKKLHELGELDDHLVPLTEEPMDIDTDTTDKKCVSGPGTTKRKELHGII 632

Query: 702  PIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV- 759
             +  LSG W  E   VIL++Y F+F C    E ++GFVLL+ES LD+DV + E++L+L+ 
Sbjct: 633  NVHGLSGNWIHESETVILNSYTFDFRCDQEGETFAGFVLLMESVLDDDVAHSEIDLFLIP 692

Query: 760  SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG-SREFFLKRETNS 818
            +K V   ++  G++ L+ +Q+ K K FQE FFNG+FG+LF  S++SG  REF  ++    
Sbjct: 693  NKMVYTAITPCGKIQLNKEQLRKGKLFQEFFFNGIFGRLFHGSRTSGLQREFIFRKGHEI 752

Query: 819  LWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSS 878
             W    MYLLLPL   ++       I W  +  C+  VE ++              GN +
Sbjct: 753  QWGSDNMYLLLPLR-NSSHIQHDLNIYWEAVESCSGAVEQLRNLYL--------EDGNLN 803

Query: 879  PCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDG 938
                   K    G+D+IHLAN S+    +KD VVL++HTGRIYS+++++ +++A+  FD 
Sbjct: 804  HENLCSHKRSNKGEDIIHLANKSLHFSTVKDSVVLSLHTGRIYSVLDLILDTTADDSFDE 863

Query: 939  NTDDDSK---TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL---VNFNDGGGSGKGS 992
              +  +    +FV+Y+ +KYGIV+ HPGQPLL LKQSHN HNLL   + + DG      +
Sbjct: 864  MYNGKASPFSSFVDYYHQKYGIVIQHPGQPLLLLKQSHNAHNLLFSKMKYQDGS-----T 918

Query: 993  KSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHS 1052
             + +  +K Q+H  +PPELL+ +DV   ++KS YLLPSVM R++SLMLASQLR +I+   
Sbjct: 919  GNPLLVEKEQIHARVPPELLIHIDVTTDILKSFYLLPSVMHRVQSLMLASQLRRDISYTQ 978

Query: 1053 RNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARR 1112
            R   IPSSLILEA+TTL CCE+FS+ERLELLGDSVLKY + C LFL YP KHEG LS  R
Sbjct: 979  R---IPSSLILEAITTLRCCETFSLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMR 1035

Query: 1113 SWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKF 1172
            S AVCN+TLHK G  R LQGYIRD+AFDPRRWVAPGQ+SLRP PC CG++T  VP  G++
Sbjct: 1036 SKAVCNATLHKHGICRSLQGYIRDTAFDPRRWVAPGQISLRPFPCNCGIETAFVPFTGEY 1095

Query: 1173 FTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEV 1232
             + D   +VGKPCD GHRWM SKT++DC EAL+GAYYVGGG+ AA+++M+W GID   ++
Sbjct: 1096 ISDDPSFIVGKPCDRGHRWMCSKTVSDCVEALVGAYYVGGGITAAIWVMRWFGIDVRCDM 1155

Query: 1233 SLVDDCI--TRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ 1287
             LV      + AS   Y+ ++   +++E+K+ Y F+VK LL EA++H S+QE    YCYQ
Sbjct: 1156 ELVQKAKYNSNASQLCYLSKLKVFEELEAKLKYNFSVKGLLLEAVSHPSLQELGVDYCYQ 1215

Query: 1288 --------------------------------------------------NLYKHLQHCS 1297
                                                              N++ HLQH S
Sbjct: 1216 RLEFLGDSVLDLLITQHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGS 1275

Query: 1298 TLLLSQITEYVKS----FPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1353
             +LL Q+TEYV+S      K  E      + KAPK LGD++ESI GA+ ID   N+D VW
Sbjct: 1276 GILLEQVTEYVRSSLEYHGKENEFVQQA-TFKAPKVLGDIMESITGAIFIDVNFNVDLVW 1334

Query: 1354 RIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLV 1413
            +I +P+LSP++TPDKL LPP REL+ELC  LG F+K  CT KGE +  E+ +QL+D LL+
Sbjct: 1335 KIVEPLLSPMITPDKLALPPYRELLELCSHLGCFIKSKCTSKGEELIIEMTVQLRDELLI 1394

Query: 1414 GEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKE--DLPEPPSC 1471
             +G +R+RK+AK KAA+++L  L+     + +  S   +L     +   E   L     C
Sbjct: 1395 AQGHDRNRKSAKAKAAARILVDLKKRGLSLKQCFSKAKQLDIVSSELQSELISLESRYDC 1454

Query: 1472 KRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETT 1531
                G+  ++    S + A        VV P+ M KGGPRT+LF+LCK + WP+P FE  
Sbjct: 1455 PDVNGS-LSLEGLSSVRAA--------VVLPLKMDKGGPRTALFRLCKRLQWPIPEFEFV 1505

Query: 1532 ESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLH 1591
            E + RT +V  +G+   T F+SFVS ITLHIP+   +   G+ R DKKSS DSA+L+ML 
Sbjct: 1506 EQRFRTPIVL-DGVTT-TNFNSFVSTITLHIPDVTVITLQGERRTDKKSSQDSASLVMLQ 1563

Query: 1592 ELE 1594
            +LE
Sbjct: 1564 KLE 1566


>gi|222613035|gb|EEE51167.1| hypothetical protein OsJ_31945 [Oryza sativa Japonica Group]
          Length = 1570

 Score = 1311 bits (3393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 741/1631 (45%), Positives = 1000/1631 (61%), Gaps = 167/1631 (10%)

Query: 35   PSSSTNSINFIPRIYQL-KVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK 93
            P  S  + +  PR  QL +VFE A R NTIAVL+TG+GKTM+AVML ++ A+        
Sbjct: 27   PRGSRPTADTTPRTSQLVEVFEAALRGNTIAVLDTGSGKTMVAVMLAREHAR-------- 78

Query: 94   KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
                          +Q++VIR +TD +V    GA  V EW +  W++E+ +N+++VMTPQ
Sbjct: 79   --------------RQFEVIREYTDLDVMMCSGASRVGEWGADHWKEEVGRNEIVVMTPQ 124

Query: 154  ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR 213
            ILLDALR AFL++  V  ++ DECH A G+HPY +IMK                      
Sbjct: 125  ILLDALRHAFLTMSAVSLLIFDECHRACGSHPYARIMK---------------------- 162

Query: 214  KGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273
                                   ++ +ED+ E+E F P      ++YD       +LK K
Sbjct: 163  -----------------------IYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLKSK 199

Query: 274  LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
            L++   +FD+ L  LQ S  N +KD D+  +T RK LS YH KILY L++LG I   E V
Sbjct: 200  LQIFSDEFDSLLVGLQESPSNKFKDTDNILETSRKSLSRYHGKILYSLNDLGPIITSEVV 259

Query: 334  KICLEKV--LKAQEECEIYRQSSL--QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKA 389
            KI +E V  L   E+C I+ ++SL     YF +E L +I   LP      +       + 
Sbjct: 260  KIHIESVKPLCDSEDC-IFSKASLCLHMSYF-KEALSLIEEILPQGYGELMKSESGSEEL 317

Query: 390  VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLT 449
               GYIS+K++ L+ +F SFG S +VLC+IFV+RII AK VERF++ +   +  +++YLT
Sbjct: 318  TKRGYISSKVNTLINIFKSFGSSNEVLCLIFVDRIITAKAVERFMRGIVNFSCFSISYLT 377

Query: 450  GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
            G +TS DAL+P VQ+  L+ FR GKVNLLF TDV EEG+ VPNCS VIRFDLP+TV SY+
Sbjct: 378  GGSTSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRFDLPRTVCSYV 437

Query: 510  QSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKT 569
            QSRGRAR++NS+FILM+ERGNL+Q+  +F +I++   V + AL R P A      +    
Sbjct: 438  QSRGRARRNNSEFILMIERGNLQQQEHIFRMIQTGYYVKNCALYRHPNA-LSYDLSIQGM 496

Query: 570  KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAP 629
             +Y V+STGA++T D  VNLI +YCE LP D+Y+ PKP F+    +  ++C LTLP NA 
Sbjct: 497  YTYQVQSTGATITADCCVNLIRKYCEKLPKDRYFMPKPSFEVTIEDGLFKCTLTLPRNAA 556

Query: 630  FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGA 689
            FQ+IVGP S + NLSKQLV LEAC+KLHQ+G LNDHL+P  EEP + +  +   + + G 
Sbjct: 557  FQSIVGPLSSSSNLSKQLVSLEACKKLHQLGELNDHLVPLTEEPMDTDFTTADEKCISGP 616

Query: 690  GTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDND 748
            GTTKRKELHGTT + ALSG W  +   + L+ Y+ +F C    E Y+GFVLL+E ELD+D
Sbjct: 617  GTTKRKELHGTTCVLALSGTWIHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELDDD 676

Query: 749  VGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGS 807
            V   +++L+L+ +K V  TV+  G+V L+  Q+ K K FQE FFNG+FG+LF  S+ SG+
Sbjct: 677  VAPSKMDLFLIPNKMVYTTVTPRGKVQLNKKQLGKGKLFQEFFFNGIFGRLFHGSRKSGA 736

Query: 808  -REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLG 866
             R+F  K+     W+   MYLLLPL   +   D    I+W  I  CA  VE +   S+ G
Sbjct: 737  QRDFIFKKGHEIQWNTESMYLLLPLRDSSYIQD-DLSIHWEAIESCAGAVEQLW-SSYQG 794

Query: 867  AAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEI 926
                     N  P    P K     +++IHLAN S+   ++KD VVL++HTGRIY+++++
Sbjct: 795  DE-------NVIPVNCIPQKRRGGQEEIIHLANKSLHCSSIKDSVVLSLHTGRIYTVLDL 847

Query: 927  VNNSSAESPFDGNTDDDSK---TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL---V 980
            + +++AE  FD      +    +FV+Y+ +KYGI++ HP QPLL LKQSHN HNLL   +
Sbjct: 848  ILDTTAEDSFDEMCKGKASPFTSFVDYYHQKYGIIIQHPEQPLLLLKQSHNAHNLLFSKL 907

Query: 981  NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLML 1040
             + DG  +GK     +  +K Q+H  +PPELL+ +DV   ++KS YLLPSV+ RL+SLML
Sbjct: 908  KYLDGS-TGKP----LLMEKEQIHARVPPELLIHLDVTTDILKSFYLLPSVIHRLQSLML 962

Query: 1041 ASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTY 1100
            ASQLR EI     N HIP +LILEA+TTL CCE+FS+ERLELLGDSVLKY V C LFL Y
Sbjct: 963  ASQLRREIG---YNQHIPVTLILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRY 1019

Query: 1101 PKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECG 1160
            P KHEGQLS  RS AVCN+TLHK G  R LQGY+RD+AFDPRRWVAPGQ+SLRP PC CG
Sbjct: 1020 PMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCG 1079

Query: 1161 VDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYM 1220
            ++T  VP   ++   D    VGKPCD GHRWM SKTI+DC EAL+GAYYVGGG+ AAL++
Sbjct: 1080 IETAFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWV 1139

Query: 1221 MKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASV 1280
            M+W GID   ++ L+ +    AS    + +IN+I+++E+K+ Y F+VK LL EAITH S+
Sbjct: 1140 MRWFGIDIKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSL 1199

Query: 1281 QEF---YCYQ-------------------------------------------------- 1287
            QE    YCYQ                                                  
Sbjct: 1200 QELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRN 1259

Query: 1288 NLYKHLQHCSTLLLSQITEYVKS-FPKPGETTD--SGPSMKAPKALGDLLESIVGAVLID 1344
            N++ HLQH S +LL QITEYV+S     G+ ++     + K PK LGD++ESI GAV ID
Sbjct: 1260 NIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFID 1319

Query: 1345 TKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELR 1404
            T  N+D VW IF+P+LSP++TPDKL LPP REL+ELC  +G F+   CT KGE V  E+ 
Sbjct: 1320 TDFNVDMVWEIFEPLLSPLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEEVIIEMS 1379

Query: 1405 LQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKED 1464
            LQL+D LLV +G +R++K AK KAAS++L  L+  +    K   +  K  D      + D
Sbjct: 1380 LQLRDELLVAQGHDRNKKRAKAKAASRILADLKQQQGLSIKQCLSKAKQLDIVTSDLQFD 1439

Query: 1465 LPEPPSCKRQKGTEAAIP-AGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLW 1523
            L          GT+ +     D        +V   VV P+ M+KGGPR++LF+LCK + W
Sbjct: 1440 LT-------SSGTQLSYSDLNDYHILEGLSSVKKEVVLPLKMEKGGPRSALFKLCKILQW 1492

Query: 1524 PMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFD 1583
            PMP FE  E + RT +V  +G    T F+SFVS ITLHIP+   +   G+ R DKKS+ D
Sbjct: 1493 PMPEFEFVEQRFRTPIVM-DG-ATTTNFNSFVSTITLHIPDATTITFQGERRTDKKSAQD 1550

Query: 1584 SAALIMLHELE 1594
            SA+L+MLH+L+
Sbjct: 1551 SASLMMLHKLQ 1561


>gi|414871006|tpg|DAA49563.1| TPA: hypothetical protein ZEAMMB73_299457, partial [Zea mays]
          Length = 1517

 Score = 1310 bits (3390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 707/1566 (45%), Positives = 971/1566 (62%), Gaps = 157/1566 (10%)

Query: 46   PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD-IAQAIKSNGFKKLIIFLAPTVH 104
            PR YQ++VF  A R NTIAVL+TG+GKTM+A+ML ++ + +A      +++++FLAPTVH
Sbjct: 33   PRGYQVEVFAAALRGNTIAVLDTGSGKTMVAIMLAREHVLRARAGEALRRIVVFLAPTVH 92

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LVHQQ++VIR +TD +  E +GA GV  W+++ W++ I   +++VMTPQILLDALR AFL
Sbjct: 93   LVHQQFEVIREYTDLDAVECHGASGVGHWNAKRWKEAIGTKEIVVMTPQILLDALRHAFL 152

Query: 165  SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEG 224
            ++ ++  ++ DECH A GNHPY+ IMKEFY  S+ +P +FGMTASPV +KG S+  DCE 
Sbjct: 153  TMRVMSLLIFDECHRACGNHPYSLIMKEFYIDSEWRPAIFGMTASPVSKKGASTIEDCEA 212

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
            QI++LE  LD++V+ +ED+ E+E F   AK   ++YD   F                   
Sbjct: 213  QIAQLELVLDAKVYIVEDRNELESFSTGAKVVNKYYDPYLF------------------- 253

Query: 285  LSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV--LK 342
                         D+D+    L+                       E VKI  E +  + 
Sbjct: 254  -------------DLDNLESKLQMLFE-------------------EVVKIYNESINTID 281

Query: 343  AQEECEIYRQS-SLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHE 401
              E+C   ++S +LQ  YF +E L +I   LP      +      ++    GYIS+K+  
Sbjct: 282  DSEDCVFSKESLNLQVSYF-KEALFLIEDFLPQGYGELMKSESGSAELTKKGYISSKVES 340

Query: 402  LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPK 461
            L+ +F SFG S +VLC+IFVERI  AK VERF++     +  +++YLTG +TS DAL+P 
Sbjct: 341  LINIFKSFGSSEEVLCMIFVERITTAKAVERFMRGNVNFSRFSISYLTGGSTSKDALSPA 400

Query: 462  VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            VQ+  L+ FR GKVNLLF TDV EEG+ VPNCS VIRFDLP+TV SY+QSRGRAR+ +S 
Sbjct: 401  VQRFTLDLFRAGKVNLLFTTDVTEEGIDVPNCSCVIRFDLPRTVCSYVQSRGRARKSSSS 460

Query: 522  FILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASV 581
            ++LM+ERGNL Q+  +F IIR+E  V   AL + P    L      K   Y VESTGA++
Sbjct: 461  YVLMIERGNLAQQEHIFRIIRTEYYVKTFALHKQPNTPSLDLPLQEKY-IYHVESTGATI 519

Query: 582  TTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNK 641
            T +  VNLI++YCE LP D+YY PKP F+    + +Y+C LT+P NA F++IVGP S + 
Sbjct: 520  TAECCVNLIYKYCEKLPKDRYYLPKPCFEVGLKDGSYQCTLTMPHNAAFRSIVGPPSSSC 579

Query: 642  NLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTT 701
            NL+KQLVCLEAC+KLH++G L+DHL+P  EEP + +  +   + + G GTTKRKELHGT 
Sbjct: 580  NLAKQLVCLEACKKLHELGELDDHLVPLTEEPMDIDTDTTDKKCVSGPGTTKRKELHGTI 639

Query: 702  PIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV- 759
             +  LSG W  E   VIL+AY F+F C    E+Y+GFVLL+ES LD+DV   E++L+L+ 
Sbjct: 640  NVHGLSGNWIHESETVILNAYTFDFRCDQEGELYAGFVLLMESVLDDDVARSEIDLFLIP 699

Query: 760  SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG-SREFFLKRETNS 818
            +K V  T++  G++ L+ +Q+ K K FQE FFNG+FG+LF  S++    REF   +    
Sbjct: 700  NKMVYTTMTPCGKIQLNKEQLCKGKLFQEFFFNGIFGRLFHGSRTDELQREFIFTKGHEI 759

Query: 819  LWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSS 878
             W    MYLLLPL   +        I W  +  C+  VE ++              GN +
Sbjct: 760  QWGSDNMYLLLPLRNSSQIQHDP-NIYWEAVESCSGTVEQLRNLYL--------EDGNLN 810

Query: 879  PCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDG 938
                   K    G+D+IHLAN S+    +KD VVL++HTGRIYS+++++ + +A+  FD 
Sbjct: 811  HENLCSHKRSNKGEDIIHLANKSLHFSTVKDSVVLSLHTGRIYSVLDLILDKTADDSFDE 870

Query: 939  NTDDDSK---TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL---VNFNDGGGSGKGS 992
              +  +    +FV+Y+ +KYGIV+ HPGQPLL LKQSHN HNLL   + + DG      +
Sbjct: 871  MYNGKASPFASFVDYYHQKYGIVIQHPGQPLLLLKQSHNAHNLLFSKMKYQDGS-----T 925

Query: 993  KSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHS 1052
             + +  +K Q+H  +PPELL+ +DV   ++KS YLLPSVM R++SLMLASQLR  I+   
Sbjct: 926  GNPLLVEKEQIHARVPPELLIHIDVATDILKSFYLLPSVMHRVQSLMLASQLRSNISYIQ 985

Query: 1053 RNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARR 1112
            R   IPSSLILEA+TTL CCESFS+ERLELLGDSVLKY + C LFL YP KHEG LS  R
Sbjct: 986  R---IPSSLILEAITTLRCCESFSLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMR 1042

Query: 1113 SWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKF 1172
            S AVCN+TLHK G  + LQGYIRD+AFDPRRWVAPGQ+SLRP PC CG++T  VP +G +
Sbjct: 1043 SKAVCNATLHKHGIWQSLQGYIRDAAFDPRRWVAPGQISLRPFPCNCGIETAFVPFNGGY 1102

Query: 1173 FTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEV 1232
             + D   VVGKPCD GHRWM SKT++DC EAL+GAYYVGGG+ AA+++M+W GID   ++
Sbjct: 1103 ISDDPSFVVGKPCDRGHRWMCSKTVSDCVEALVGAYYVGGGIAAAIWVMRWFGIDVRCDM 1162

Query: 1233 SLVDDCI--TRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ 1287
             LV      + AS   Y+ +I +I+++E+K+ Y F+VK LL EAI+H SVQE    YCYQ
Sbjct: 1163 ELVQKAKYNSNASRMCYLSKIKDIEELEAKLKYNFSVKGLLLEAISHPSVQELGVDYCYQ 1222

Query: 1288 --------------------------------------------------NLYKHLQHCS 1297
                                                              N++ HLQH S
Sbjct: 1223 RLEFLGDSVLDLLITQHLYATHTDVDPGELTDLRSASVSNENFAQAVVRNNIHNHLQHGS 1282

Query: 1298 TLLLSQITEYVKS-FPKPGETTD--SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWR 1354
             +LL Q+TEYV+S     G+        + KAPK LGD++ESI GA+ ID   ++D VW+
Sbjct: 1283 GILLEQVTEYVRSNLEYHGKENQFLQQATCKAPKVLGDIMESITGAIFIDVNFDVDLVWK 1342

Query: 1355 IFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVG 1414
            I +P+LSP++TPDKL LPP REL+ELC  LG F++  CT +GE +  E+++QL+D  L+ 
Sbjct: 1343 IVEPLLSPMITPDKLALPPYRELLELCSHLGCFIESKCTSEGEELIIEMKVQLRDEQLIA 1402

Query: 1415 EGQERSRKAAKGKAASQLL---KKLEVCEKR-ISKGASNTGKLGDDCRQTTKEDLPEPPS 1470
            +G +R+ K AK  AA+++L   KK  +  K+ ISK  +N   +     Q+   +L     
Sbjct: 1403 QGHDRNGKTAKANAAARILVDMKKRGLSLKQCISK--ANQLDIVSSKLQSELTNLESRHD 1460

Query: 1471 CKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFET 1530
            C    GT   +  G S  +A        VV P+ M KGGPRT+LF+LCK++ WP+P FE 
Sbjct: 1461 CPHMNGT---LSLGLSSARA-------AVVLPLKMDKGGPRTALFRLCKSLQWPIPEFEF 1510

Query: 1531 TESKSR 1536
             E + R
Sbjct: 1511 VEQRFR 1516


>gi|414871005|tpg|DAA49562.1| TPA: hypothetical protein ZEAMMB73_299457 [Zea mays]
          Length = 1440

 Score = 1268 bits (3282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 671/1464 (45%), Positives = 922/1464 (62%), Gaps = 141/1464 (9%)

Query: 46   PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD-IAQAIKSNGFKKLIIFLAPTVH 104
            PR YQ++VF  A R NTIAVL+TG+GKTM+A+ML ++ + +A      +++++FLAPTVH
Sbjct: 33   PRGYQVEVFAAALRGNTIAVLDTGSGKTMVAIMLAREHVLRARAGEALRRIVVFLAPTVH 92

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LVHQQ++VIR +TD +  E +GA GV  W+++ W++ I   +++VMTPQILLDALR AFL
Sbjct: 93   LVHQQFEVIREYTDLDAVECHGASGVGHWNAKRWKEAIGTKEIVVMTPQILLDALRHAFL 152

Query: 165  SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEG 224
            ++ ++  ++ DECH A GNHPY+ IMKEFY  S+ +P +FGMTASPV +KG S+  DCE 
Sbjct: 153  TMRVMSLLIFDECHRACGNHPYSLIMKEFYIDSEWRPAIFGMTASPVSKKGASTIEDCEA 212

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
            QI++LE  LD++V+ +ED+ E+E F   AK   ++YD   F                   
Sbjct: 213  QIAQLELVLDAKVYIVEDRNELESFSTGAKVVNKYYDPYLF------------------- 253

Query: 285  LSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV--LK 342
                         D+D+    L+                       E VKI  E +  + 
Sbjct: 254  -------------DLDNLESKLQMLFE-------------------EVVKIYNESINTID 281

Query: 343  AQEECEIYRQS-SLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHE 401
              E+C   ++S +LQ  YF +E L +I   LP      +      ++    GYIS+K+  
Sbjct: 282  DSEDCVFSKESLNLQVSYF-KEALFLIEDFLPQGYGELMKSESGSAELTKKGYISSKVES 340

Query: 402  LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPK 461
            L+ +F SFG S +VLC+IFVERI  AK VERF++     +  +++YLTG +TS DAL+P 
Sbjct: 341  LINIFKSFGSSEEVLCMIFVERITTAKAVERFMRGNVNFSRFSISYLTGGSTSKDALSPA 400

Query: 462  VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            VQ+  L+ FR GKVNLLF TDV EEG+ VPNCS VIRFDLP+TV SY+QSRGRAR+ +S 
Sbjct: 401  VQRFTLDLFRAGKVNLLFTTDVTEEGIDVPNCSCVIRFDLPRTVCSYVQSRGRARKSSSS 460

Query: 522  FILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASV 581
            ++LM+ERGNL Q+  +F IIR+E  V   AL + P    L      K   Y VESTGA++
Sbjct: 461  YVLMIERGNLAQQEHIFRIIRTEYYVKTFALHKQPNTPSLDLPLQEKY-IYHVESTGATI 519

Query: 582  TTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNK 641
            T +  VNLI++YCE LP D+YY PKP F+    + +Y+C LT+P NA F++IVGP S + 
Sbjct: 520  TAECCVNLIYKYCEKLPKDRYYLPKPCFEVGLKDGSYQCTLTMPHNAAFRSIVGPPSSSC 579

Query: 642  NLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTT 701
            NL+KQLVCLEAC+KLH++G L+DHL+P  EEP + +  +   + + G GTTKRKELHGT 
Sbjct: 580  NLAKQLVCLEACKKLHELGELDDHLVPLTEEPMDIDTDTTDKKCVSGPGTTKRKELHGTI 639

Query: 702  PIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV- 759
             +  LSG W  E   VIL+AY F+F C    E+Y+GFVLL+ES LD+DV   E++L+L+ 
Sbjct: 640  NVHGLSGNWIHESETVILNAYTFDFRCDQEGELYAGFVLLMESVLDDDVARSEIDLFLIP 699

Query: 760  SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG-SREFFLKRETNS 818
            +K V  T++  G++ L+ +Q+ K K FQE FFNG+FG+LF  S++    REF   +    
Sbjct: 700  NKMVYTTMTPCGKIQLNKEQLCKGKLFQEFFFNGIFGRLFHGSRTDELQREFIFTKGHEI 759

Query: 819  LWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSS 878
             W    MYLLLPL   +        I W  +  C+  VE ++              GN +
Sbjct: 760  QWGSDNMYLLLPLRNSSQIQHDP-NIYWEAVESCSGTVEQLRNLYL--------EDGNLN 810

Query: 879  PCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDG 938
                   K    G+D+IHLAN S+    +KD VVL++HTGRIYS+++++ + +A+  FD 
Sbjct: 811  HENLCSHKRSNKGEDIIHLANKSLHFSTVKDSVVLSLHTGRIYSVLDLILDKTADDSFDE 870

Query: 939  NTDDDSK---TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL---VNFNDGGGSGKGS 992
              +  +    +FV+Y+ +KYGIV+ HPGQPLL LKQSHN HNLL   + + DG      +
Sbjct: 871  MYNGKASPFASFVDYYHQKYGIVIQHPGQPLLLLKQSHNAHNLLFSKMKYQDGS-----T 925

Query: 993  KSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHS 1052
             + +  +K Q+H  +PPELL+ +DV   ++KS YLLPSVM R++SLMLASQLR  I+   
Sbjct: 926  GNPLLVEKEQIHARVPPELLIHIDVATDILKSFYLLPSVMHRVQSLMLASQLRSNISYIQ 985

Query: 1053 RNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARR 1112
            R   IPSSLILEA+TTL CCESFS+ERLELLGDSVLKY + C LFL YP KHEG LS  R
Sbjct: 986  R---IPSSLILEAITTLRCCESFSLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMR 1042

Query: 1113 SWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKF 1172
            S AVCN+TLHK G  + LQGYIRD+AFDPRRWVAPGQ+SLRP PC CG++T  VP +G +
Sbjct: 1043 SKAVCNATLHKHGIWQSLQGYIRDAAFDPRRWVAPGQISLRPFPCNCGIETAFVPFNGGY 1102

Query: 1173 FTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEV 1232
             + D   VVGKPCD GHRWM SKT++DC EAL+GAYYVGGG+ AA+++M+W GID   ++
Sbjct: 1103 ISDDPSFVVGKPCDRGHRWMCSKTVSDCVEALVGAYYVGGGIAAAIWVMRWFGIDVRCDM 1162

Query: 1233 SLVDDCI--TRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ 1287
             LV      + AS   Y+ +I +I+++E+K+ Y F+VK LL EAI+H SVQE    YCYQ
Sbjct: 1163 ELVQKAKYNSNASRMCYLSKIKDIEELEAKLKYNFSVKGLLLEAISHPSVQELGVDYCYQ 1222

Query: 1288 --------------------------------------------------NLYKHLQHCS 1297
                                                              N++ HLQH S
Sbjct: 1223 RLEFLGDSVLDLLITQHLYATHTDVDPGELTDLRSASVSNENFAQAVVRNNIHNHLQHGS 1282

Query: 1298 TLLLSQITEYVKS-FPKPGETTD--SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWR 1354
             +LL Q+TEYV+S     G+        + KAPK LGD++ESI GA+ ID   ++D VW+
Sbjct: 1283 GILLEQVTEYVRSNLEYHGKENQFLQQATCKAPKVLGDIMESITGAIFIDVNFDVDLVWK 1342

Query: 1355 IFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVG 1414
            I +P+LSP++TPDKL LPP REL+ELC  LG F++  CT +GE +  E+++QL+D  L+ 
Sbjct: 1343 IVEPLLSPMITPDKLALPPYRELLELCSHLGCFIESKCTSEGEELIIEMKVQLRDEQLIA 1402

Query: 1415 EGQERSRKAAKGKAASQLLKKLEV 1438
            +G +R+ K AK  AA+++L  ++V
Sbjct: 1403 QGHDRNGKTAKANAAARILVDMKV 1426


>gi|222619725|gb|EEE55857.1| hypothetical protein OsJ_04485 [Oryza sativa Japonica Group]
          Length = 1839

 Score = 1229 bits (3180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 697/1482 (47%), Positives = 908/1482 (61%), Gaps = 149/1482 (10%)

Query: 215  GVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
            G+SS +DCEGQ  ELE+ LD++++T+ D+ E+E  VPSAKE CR+YD    C  DL  +L
Sbjct: 147  GISSHLDCEGQFCELENLLDAKIYTVSDREEIEFCVPSAKEMCRYYDSKPVCFEDLSEEL 206

Query: 275  EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334
             V  SK+DA +++LQ  + + YKD DD  K  +++LS   AKI YCLD++GLICA EA K
Sbjct: 207  GVLCSKYDALITELQNKRSDMYKDADDITKESKRRLSKSIAKICYCLDDVGLICASEATK 266

Query: 335  ICLEK---------VLKAQEE------CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
            IC+E+         V+ A ++        ++ ++S     F EE LH+I   L     + 
Sbjct: 267  ICIERGQEKGWLKEVVDATDQQTDANGSRLFAENSALHMKFFEEALHLIDKRLQQGIDML 326

Query: 380  LDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
            L+      +A   GYIS KL+EL+Q+F SF  S    C+IFV+R I A+V++R +KK+  
Sbjct: 327  LNSESGCVEAAKTGYISPKLYELIQIFHSFSNSRHARCLIFVDRKITARVIDRMIKKIGH 386

Query: 440  LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
            L H TV++LTG  +SVDALTPK+QK+ L+SFR GKVNLLF TDV EEG+HVP CS VIRF
Sbjct: 387  LAHFTVSFLTGGRSSVDALTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRF 446

Query: 500  DLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC 559
            DLP+T  SY+QSRGRARQ +SQ+ILM+ERGN+KQ + +  I+RSE S+   A SR+    
Sbjct: 447  DLPRTTRSYVQSRGRARQEDSQYILMIERGNVKQNDLISAIVRSETSMVKIASSRESGNL 506

Query: 560  FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYE 619
                    +   Y V +TGA VT DSS+++++RYCE LP DK Y+PKP F++   ++ Y 
Sbjct: 507  SPGFVPNEEINEYHVGTTGAKVTADSSISIVYRYCEKLPQDKCYSPKPTFEFTHHDDGYV 566

Query: 620  CELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLI 679
            C L LP +A  Q +VGP +RN + +KQLVCL+AC+KLH++GAL+DHL  SVE+P     I
Sbjct: 567  CTLALPPSAVLQILVGPKARNMHKAKQLVCLDACKKLHELGALDDHLCLSVEDPVPE--I 624

Query: 680  SKKNESLPGAGTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFV 738
              KN+   G GTTKRKELHGTT I A SG W  +K  + L +YK NF C    +IYS FV
Sbjct: 625  VSKNKG-TGIGTTKRKELHGTTRIHAWSGNWVSKKTALKLQSYKMNFVCDQAGQIYSEFV 683

Query: 739  LLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKL 798
            LLI++ L ++V   E++LYL  K VK +VSS G + LDA QM +AK FQ L FNGLFGKL
Sbjct: 684  LLIDATLPDEVATLEIDLYLHDKMVKTSVSSCGLLELDAQQMEQAKLFQGLLFNGLFGKL 743

Query: 799  FVKSK-SSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVE 857
            F +SK  +  REF L +E   +W+ + +YLLLP    N   D +  INWS I+  A+ V+
Sbjct: 744  FTRSKVPNAPREFILNKEDTFVWNTASVYLLLP---TNPSFDSNVCINWSVIDAAATAVK 800

Query: 858  FIK------EKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMV 911
             ++      ++  LG    + N G                 D+IHLAN S  A +LKDMV
Sbjct: 801  LMRRIYSENKRELLGIFDSDQNVG-----------------DLIHLANKSCKANSLKDMV 843

Query: 912  VLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDS---KTFVNYFSEKYGIVLIHPGQPLLR 968
            VLA+HTG+IY+ ++I    S +S FDG +D      +TF  YF +KYGIVL HP QPLL 
Sbjct: 844  VLAVHTGKIYTALDIT-ELSGDSAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLV 902

Query: 969  LKQSHNPHNLLVN-FNDGGGSGKGSKSGMN-TKKPQMHVHMPPELLVRVDVPISVVKSLY 1026
            LK SHNPHNLL + F D G   +   +G     K    VHMPPELL+ +D+P+ +++S Y
Sbjct: 903  LKPSHNPHNLLSSKFRDEGNVVENMSNGTPVVNKTSNRVHMPPELLIPLDLPVEILRSFY 962

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDS 1086
            L P++M R+ESL LASQLR EI     N  I S LILEA+TTL C E FSMERLELLGDS
Sbjct: 963  LFPALMYRIESLTLASQLRSEIGYSDSN--ISSFLILEAITTLRCSEDFSMERLELLGDS 1020

Query: 1087 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVA 1146
            VLKYA             EGQLS+ R   +CN+TL+KLG +R +QGY+RD+AFDPRRW+A
Sbjct: 1021 VLKYA------------DEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLA 1068

Query: 1147 PGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
            PGQLS+RP PCEC V + EV  D      D  +V+GK CD GHRWM SKTIADC EA+IG
Sbjct: 1069 PGQLSIRPSPCECPVKS-EVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCVEAIIG 1127

Query: 1207 AYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFT 1266
            AYY GGGL AA+ ++KWLGI A++E  L+   I  AS+++Y+P+ N  + +E+K+GY F+
Sbjct: 1128 AYYAGGGLRAAMAVLKWLGIGAEIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFS 1187

Query: 1267 VKFLLQEAITHASVQEF---YCYQ------------------------------------ 1287
            VK LL EA+TH S QE    YCY+                                    
Sbjct: 1188 VKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSA 1247

Query: 1288 --------------NLYKHLQHCSTLLLSQITEYVK-----SFPKPGETTDSGPSMKAPK 1328
                          N +  LQH S LLL QITEYV      S  K    +D  P  K PK
Sbjct: 1248 SVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLP--KGPK 1305

Query: 1329 ALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFV 1388
             LGD++ESI GA+L+DTKL+LD VW IF+P+LSPIVTP+ LELPP RELIE C   GYFV
Sbjct: 1306 VLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHGYFV 1365

Query: 1389 KENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGAS 1448
              NC  +G+ V A L +QLK+VLLV +G  + RK AK  A+S LLK LE     I K AS
Sbjct: 1366 GINCRDQGDTVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLEEKGLIIPKNAS 1425

Query: 1449 NTGKLGDDCRQTT--------KEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVV 1500
             T +    C  T           D   P   K +        A DS +      +G P+ 
Sbjct: 1426 KTEQFEKHCGSTNPFNNLHVDAMDTQTPKPTKEKN-------AADS-RNISDPLLGKPLH 1477

Query: 1501 APINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCE----GLEKRTGFS-SFV 1555
              +   KGGPR +L++LCK + WPMPT E +E    +    C       +K T  + +F 
Sbjct: 1478 VIVKTSKGGPRIALYELCKKLQWPMPTME-SEKVQPSFSSVCSSPGGSSQKATPQAFAFA 1536

Query: 1556 SKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQG 1597
            S ITLHIP    +   GD RADKKSS DSAAL +L+EL+R+G
Sbjct: 1537 STITLHIPNADVISLTGDGRADKKSSQDSAALFLLYELQRRG 1578



 Score =  134 bits (336), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 75/91 (82%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           +F PR YQL V+EVA RRNTIA+L+TGAGKTMIAVMLIK+  +  ++    K+IIFLAPT
Sbjct: 33  DFTPRRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPT 92

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEW 133
           V LV QQ +VI +HTDFEVE+YYGAKGVD+W
Sbjct: 93  VQLVTQQCEVIEIHTDFEVEQYYGAKGVDQW 123


>gi|218189575|gb|EEC72002.1| hypothetical protein OsI_04862 [Oryza sativa Indica Group]
          Length = 1858

 Score = 1226 bits (3173), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 696/1482 (46%), Positives = 908/1482 (61%), Gaps = 149/1482 (10%)

Query: 215  GVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
            G+SS +DCEGQ  ELE+ LD++++T+ D+ E+E  VPSAKE CR+YD    C  DL  +L
Sbjct: 147  GISSHLDCEGQFCELENLLDAKIYTVSDREEIEFCVPSAKEMCRYYDSKPVCFEDLSEEL 206

Query: 275  EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334
             V  SK+DA +++LQ  + + YKD DD  K  +++LS   AKI YCLD++GLICA EA K
Sbjct: 207  GVLCSKYDALITELQNKRSDMYKDADDITKESKRRLSKSIAKICYCLDDVGLICASEATK 266

Query: 335  ICLEK---------VLKAQEE------CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
            IC+E+         V+ A ++        ++ ++S     F EE LH+I   L     + 
Sbjct: 267  ICIERGQEKGWLKEVVDATDQQTDVNGSRLFAENSALHMKFFEEALHLIDKRLQQGIDML 326

Query: 380  LDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
            L+      +A   GYIS KL+EL+Q+F SF  S    C+IFV+R I A+V++R +KK+  
Sbjct: 327  LNSESGCVEAAKTGYISPKLYELIQIFHSFSNSRHARCLIFVDRKITARVIDRMIKKIGH 386

Query: 440  LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
            L H TV++LTG  +SVDALTPK+QK+ L+SFR GKVNLLF TDV EEG+HVP CS VIRF
Sbjct: 387  LAHFTVSFLTGGRSSVDALTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRF 446

Query: 500  DLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC 559
            DLP+T  SY+QSRGRARQ +SQ+ILM+ERGN+KQ + +  I+RSE S+   A SR+    
Sbjct: 447  DLPRTTRSYVQSRGRARQEDSQYILMIERGNVKQNDLISAIVRSETSMVKIASSRESGNL 506

Query: 560  FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYE 619
                    +   Y V +TGA VT DSS+++++RYCE LP DK Y+PKP F++   ++ Y 
Sbjct: 507  SPGFVPNEEINEYHVGTTGAKVTADSSISIVYRYCEKLPQDKCYSPKPTFEFTHHDDGYV 566

Query: 620  CELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLI 679
            C L LP +A  Q +VGP +RN + +KQLVCL+AC+KLH++GAL+DHL  SVE+P     I
Sbjct: 567  CTLALPPSAVLQILVGPKARNMHKAKQLVCLDACKKLHELGALDDHLCLSVEDPVPE--I 624

Query: 680  SKKNESLPGAGTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFV 738
              KN+   G GTTKRKELHGTT I A SG W  +K  + L +YK NF C    +IYS FV
Sbjct: 625  VSKNKG-TGIGTTKRKELHGTTRIHAWSGNWVSKKTALKLQSYKMNFVCDQAGQIYSEFV 683

Query: 739  LLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKL 798
            LLI++ L ++V   E++LYL  K VK +VSS G + LDA QM +AK FQ L FNGLFGKL
Sbjct: 684  LLIDATLPDEVATLEIDLYLHDKMVKTSVSSCGLLELDAQQMEQAKLFQGLLFNGLFGKL 743

Query: 799  FVKSK-SSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVE 857
            F +SK  +  REF L +E   +W+ + +YLLLP    N   D +  INWS I+  A+ V+
Sbjct: 744  FTRSKVPNAPREFILNKEDTFVWNTASVYLLLP---TNPSFDSNVCINWSVIDAAATAVK 800

Query: 858  FIK------EKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMV 911
             ++      ++  LG    + N G                 D+IHLAN S  A +LKDMV
Sbjct: 801  LMRRIYSENKRELLGIFDSDQNVG-----------------DLIHLANKSCKANSLKDMV 843

Query: 912  VLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDS---KTFVNYFSEKYGIVLIHPGQPLLR 968
            VLA+HTG+IY+ ++I    S +S FDG +D      +TF  YF +KYGIVL HP QPLL 
Sbjct: 844  VLAVHTGKIYTALDIT-ELSGDSAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLV 902

Query: 969  LKQSHNPHNLLVN-FNDGGGSGKGSKSGMN-TKKPQMHVHMPPELLVRVDVPISVVKSLY 1026
            LK SHNPHNLL + F D G   +   +G     K    VHMPPELL+ +D+P+ +++S Y
Sbjct: 903  LKPSHNPHNLLSSKFRDEGNVVENMSNGTPVVNKTSNRVHMPPELLIPLDLPVEILRSFY 962

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDS 1086
            L P++M R+ESL LASQLR EI     N  I S LILEA+TTL C E FSMERLELLGDS
Sbjct: 963  LFPALMYRIESLTLASQLRSEIGYSDSN--ISSFLILEAITTLRCSEDFSMERLELLGDS 1020

Query: 1087 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVA 1146
            VLKYA             EGQLS+ R   +CN+TL+KLG +R +QGY+RD+AFDPRRW+A
Sbjct: 1021 VLKYA------------DEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLA 1068

Query: 1147 PGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
            PGQLS+RP PCEC V + EV  D      D  +V+GK CD GHRWM SKTIADC EA+IG
Sbjct: 1069 PGQLSIRPSPCECPVKS-EVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCFEAIIG 1127

Query: 1207 AYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFT 1266
            AYY GGGL AA+ ++KWLGI A++E  L+   I  AS+++Y+P+ N  + +E+K+GY F+
Sbjct: 1128 AYYAGGGLRAAMAVLKWLGIGAEIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFS 1187

Query: 1267 VKFLLQEAITHASVQEF---YCYQ------------------------------------ 1287
            VK LL EA+TH S QE    YCY+                                    
Sbjct: 1188 VKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSA 1247

Query: 1288 --------------NLYKHLQHCSTLLLSQITEYVK-----SFPKPGETTDSGPSMKAPK 1328
                          N +  LQH S LLL QITEYV      S  K    +D  P  K PK
Sbjct: 1248 SVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLP--KGPK 1305

Query: 1329 ALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFV 1388
             LGD++ESI GA+L+DTKL+LD VW IF+P+LSPIVTP+ LELPP RELIE C   GYFV
Sbjct: 1306 VLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHGYFV 1365

Query: 1389 KENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGAS 1448
              NC  +G+ V A L +QLK+VLLV +G  + RK AK  A+S LLK LE     + K AS
Sbjct: 1366 GINCRDQGDTVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLEEKGLILPKNAS 1425

Query: 1449 NTGKLGDDCRQTT--------KEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVV 1500
             T +    C  T           D   P   K +        A DS +      +G P+ 
Sbjct: 1426 KTEQFEKHCGSTNPFNNLHVDAMDTHTPKPTKEKN-------AADS-RNISDPLLGKPLH 1477

Query: 1501 APINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCE----GLEKRTGFS-SFV 1555
              +   KGGPR +L++LCK + WPMPT E +E    +    C       +K T  + +F 
Sbjct: 1478 VIVKTSKGGPRIALYELCKKLQWPMPTME-SEKVQPSFSSVCSSPGGSSQKATPQAFAFA 1536

Query: 1556 SKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQG 1597
            S ITLHIP    +   GD RADKKSS DSAAL +L+EL+R+G
Sbjct: 1537 STITLHIPNADVISLTGDGRADKKSSQDSAALFLLYELQRRG 1578



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 75/91 (82%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           +F PR YQL V+EVA RRNTIA+L+TGAGKTMIAVMLIK+  +  ++    K+IIFLAPT
Sbjct: 33  DFTPRRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPT 92

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEW 133
           V LV QQ +VI +HTDFEVE+YYGAKGVD+W
Sbjct: 93  VQLVAQQCEVIEIHTDFEVEQYYGAKGVDQW 123


>gi|147817099|emb|CAN66439.1| hypothetical protein VITISV_035236 [Vitis vinifera]
          Length = 2076

 Score = 1161 bits (3004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/970 (61%), Positives = 711/970 (73%), Gaps = 81/970 (8%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQ KVFEVAKRRNTIAVL+TG GKTMIA+MLI++I QA+K++G K  IIFLAPTVHL 
Sbjct: 1078 RSYQWKVFEVAKRRNTIAVLDTGTGKTMIALMLIREIGQAVKADGRKLFIIFLAPTVHL- 1136

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
              Q+ VI+  T FEVEEYYGAKGVDEW ++ W+KEI+++DVLVMTPQILLDALRKAFLSL
Sbjct: 1137 --QFKVIKDSTGFEVEEYYGAKGVDEWSAKSWEKEISEHDVLVMTPQILLDALRKAFLSL 1194

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQI 226
              VC +++DECH ATGNHPYTKIMK                                   
Sbjct: 1195 XTVCLMIVDECHRATGNHPYTKIMK----------------------------------- 1219

Query: 227  SELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLS 286
                      ++TIED+TE+EVF+PSAKE  RFYD S+F   DLK KL+ SWSKFD  L 
Sbjct: 1220 ----------IYTIEDRTELEVFIPSAKEINRFYDASQFHNLDLKAKLKSSWSKFDNLLL 1269

Query: 287  KLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE 346
             LQGS +  YKDMDDK K LRK+LS+ HAKILYCLD+LGLICAYEAVK+C+E V  AQEE
Sbjct: 1270 NLQGSPMTQYKDMDDKLKALRKRLSNDHAKILYCLDDLGLICAYEAVKVCIENVSNAQEE 1329

Query: 347  CEIYRQSSLQCKYFLEEVLHVIGSALP-------LADKIFLD----------FG-----F 384
             E YRQSS QCK FL+EVL +IG  LP       LA    LD          FG     F
Sbjct: 1330 FEFYRQSSSQCKCFLQEVLGIIGGYLPHVLHKMSLAAVDELDSLVSEQQGFFFGEWKTFF 1389

Query: 385  DYSKAVDLG-----YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
               K  + G      +   + E L +FL    + +VLC+IFVERII AKV+ERF+KK+ +
Sbjct: 1390 LEHKGFERGDPLPPNLFFVVMEALIVFLE-RVARKVLCLIFVERIITAKVIERFIKKIIY 1448

Query: 440  LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
            L+H TV+YLTGS +SVDAL PK Q+E LESFR GKVNLLFATDV+EEG+HVPNCS VIRF
Sbjct: 1449 LSHFTVSYLTGSNSSVDALAPKAQRETLESFRSGKVNLLFATDVVEEGIHVPNCSCVIRF 1508

Query: 500  DLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC 559
            DLPKTV SY+QSRGRARQ +SQFI+MLERGN +QR++LFDIIRSE S+TDTA +RDP+  
Sbjct: 1509 DLPKTVRSYVQSRGRARQSDSQFIIMLERGNTEQRDQLFDIIRSEYSMTDTATNRDPDGY 1568

Query: 560  FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYE 619
             LKA T  +  SY V+STGASVT DSSV+LIHRYCE LP DKY+TPKP F +   E  YE
Sbjct: 1569 TLKAYTIEEMDSYFVDSTGASVTADSSVSLIHRYCEKLPGDKYFTPKPFFHFTYLEGMYE 1628

Query: 620  CELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLI 679
            C+LTLP NA FQTI+GP ++N +LSKQLVCLEAC+KLHQ+GAL+DHLLP VEEPSEN++I
Sbjct: 1629 CKLTLPPNAAFQTIIGPGNKNSHLSKQLVCLEACKKLHQMGALDDHLLPYVEEPSENDII 1688

Query: 680  SKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKC-GVILHAYKFNFACSIVTEIYSGFV 738
             K   S  GAGTTKRKELHGTT   ALSG WG+K  G I  AYK +F+C+IV E+YSGFV
Sbjct: 1689 VKSKGSAAGAGTTKRKELHGTTQTCALSGTWGDKIDGAIFQAYKIDFSCNIVNELYSGFV 1748

Query: 739  LLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKL 798
            LLIES+LD+DVGN E+ELYL+SK V+ +VSS GQV LDA+Q+ KA  F ELFFN LFG+L
Sbjct: 1749 LLIESKLDDDVGNIEMELYLISKFVRTSVSSCGQVSLDAEQVMKAMXFHELFFNSLFGRL 1808

Query: 799  FVKSKSSG-SREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVE 857
            F+ SKSSG  REF L  +  SLWS S MYLLLP+E  N   D SWRINW GIN CASVVE
Sbjct: 1809 FIGSKSSGVRREFLLNTQQKSLWSSSNMYLLLPIESSNIPSDESWRINWPGINSCASVVE 1868

Query: 858  FIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHT 917
            F++++S L     N++ GN SPC T   +T C     +HLAN SV   NLK+MVVLAIHT
Sbjct: 1869 FLEKRSQLSTGNMNDDTGNPSPCSTGLVETECKSISTVHLANNSVHVNNLKNMVVLAIHT 1928

Query: 918  GRIYSIVEIVNNSSAESPFDGNTDDDSK---TFVNYFSEKYGIVLIHPGQPLLRLKQSHN 974
            GRIYSI+++V ++SAESPFDG+ D +S    TF  YF+ KYGIVL++PGQPLL LKQSHN
Sbjct: 1929 GRIYSILDVVIDTSAESPFDGSADVNSSNYTTFAEYFNNKYGIVLMYPGQPLLLLKQSHN 1988

Query: 975  PHNLLVNFND 984
             HNLLVNFND
Sbjct: 1989 AHNLLVNFND 1998


>gi|297610684|ref|NP_001064898.2| Os10g0485600 [Oryza sativa Japonica Group]
 gi|18087887|gb|AAL59041.1|AC087182_24 putative RNA helicase [Oryza sativa Japonica Group]
 gi|31432753|gb|AAP54346.1| Type III restriction enzyme, res subunit family protein, expressed
            [Oryza sativa Japonica Group]
 gi|255679506|dbj|BAF26812.2| Os10g0485600 [Oryza sativa Japonica Group]
          Length = 1458

 Score = 1141 bits (2951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 645/1468 (43%), Positives = 872/1468 (59%), Gaps = 216/1468 (14%)

Query: 35   PSSSTNSINFIPRIYQL-KVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN-GF 92
            P  S  + +  PR  QL +VFE A R NTIAVL+TG+GKTM+AVML ++ A+ +++    
Sbjct: 27   PRGSRPTADTTPRTSQLVEVFEAALRGNTIAVLDTGSGKTMVAVMLAREHARRVRAGEAP 86

Query: 93   KKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTP 152
            +++++FLAPTVHLVHQQ++VIR +TD +V    GA  V EW +  W++E+ +N+++VMTP
Sbjct: 87   RRIVVFLAPTVHLVHQQFEVIREYTDLDVMMCSGASRVGEWGADHWKEEVGRNEIVVMTP 146

Query: 153  QILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVV 212
            QILLDALR AFL++  V  ++ DECH A G+HPY +IMK                     
Sbjct: 147  QILLDALRHAFLTMSAVSLLIFDECHRACGSHPYARIMK--------------------- 185

Query: 213  RKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
                                    ++ +ED+ E+E F P      ++YD       +LK 
Sbjct: 186  ------------------------IYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLKS 221

Query: 273  KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            KL++   +FD+ L  LQ S  N +KD D+  +T RK LS YH KILY L++LG I   E 
Sbjct: 222  KLQIFSDEFDSLLVGLQESPSNKFKDTDNILETSRKSLSRYHGKILYSLNDLGPIITSEV 281

Query: 333  VKICLEKV--LKAQEECEIYRQSSL--QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
            VKI +E V  L   E+C I+ ++SL     YF +E L +I   LP      +       +
Sbjct: 282  VKIHIESVKPLCDSEDC-IFSKASLCLHMSYF-KEALSLIEEILPQGYGELMKSESGSEE 339

Query: 389  AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYL 448
                GYIS+K++ L+ +F SFG S +VLC+IFV+RII AK VERF++ +   +  +++YL
Sbjct: 340  LTKRGYISSKVNTLINIFKSFGSSNEVLCLIFVDRIITAKAVERFMRGIVNFSCFSISYL 399

Query: 449  TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
            TG +TS DAL+P VQ+  L+ FR GKVNLLF TDV EEG+ VPNCS VIRFDLP+TV SY
Sbjct: 400  TGGSTSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRFDLPRTVCSY 459

Query: 509  IQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVK 568
            +QSRGRAR++NS+FILM+ERGNL+Q+  +F +I++   V + AL R P A      +   
Sbjct: 460  VQSRGRARRNNSEFILMIERGNLQQQEHIFRMIQTGYYVKNCALYRHPNALSYDL-SIQG 518

Query: 569  TKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNA 628
              +Y V+STGA++T D  VNLI +YCE LP D+Y+ PKP F+    +  ++C LTLP NA
Sbjct: 519  MYTYQVQSTGATITADCCVNLIRKYCEKLPKDRYFMPKPSFEVTIEDGLFKCTLTLPRNA 578

Query: 629  PFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPG 688
             FQ+IVGP S + NLSKQLV LEAC+KLHQ+G LNDHL+P  EEP + +  +   + + G
Sbjct: 579  AFQSIVGPLSSSSNLSKQLVSLEACKKLHQLGELNDHLVPLTEEPMDTDFTTADEKCISG 638

Query: 689  AGTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDN 747
             GTTKRKELHGTT + ALSG W  +   + L+ Y+ +F C    E Y+GFVLL+E ELD+
Sbjct: 639  PGTTKRKELHGTTCVLALSGTWIHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELDD 698

Query: 748  DVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG 806
            DV   +++L+L+ +K V  TV+  G+V L+  Q+ K K FQE FFNG+FG+LF  S+ SG
Sbjct: 699  DVAPSKMDLFLIPNKMVYTTVTPRGKVQLNKKQLGKGKLFQEFFFNGIFGRLFHGSRKSG 758

Query: 807  S-REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFL 865
            + R+F  K+     W+   MYLLLPL   +   D    I+W  I  CA  VE +   S+ 
Sbjct: 759  AQRDFIFKKGHEIQWNTESMYLLLPLRDSSYIQD-DLSIHWEAIESCAGAVEQLW-SSYQ 816

Query: 866  GAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVE 925
            G         N  P    P K     +++IHLAN S+   ++KD VVL++HTGRIY++++
Sbjct: 817  GDE-------NVIPVNCIPQKRRGGQEEIIHLANKSLHCSSIKDSVVLSLHTGRIYTVLD 869

Query: 926  IVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDG 985
            ++ +++AE  FD               E YG      G+PLL                  
Sbjct: 870  LILDTTAEDSFD---------------EMYG----STGKPLL------------------ 892

Query: 986  GGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
                         +K Q+H  +PPELL+ +D                             
Sbjct: 893  ------------MEKEQIHARVPPELLIHLD----------------------------- 911

Query: 1046 EEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHE 1105
                            ILEA+TTL CCE+FS+ERLELLGDSVLKY V C LFL YP KHE
Sbjct: 912  ----------------ILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHE 955

Query: 1106 GQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLE 1165
            GQLS  RS AVCN+TLHK G  R LQGY+RD+AFDPRRWVAPGQ+SLRP PC CG++T  
Sbjct: 956  GQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAF 1015

Query: 1166 VPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLG 1225
            VP   ++   D    VGKPCD GHRWM SKTI+DC EAL+GAYYVGGG+ AAL++M+W G
Sbjct: 1016 VPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFG 1075

Query: 1226 IDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF-- 1283
            ID   ++ L+ +    AS    + +IN+I+++E+K+ Y F+VK LL EAITH S+QE   
Sbjct: 1076 IDIKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGV 1135

Query: 1284 -YCYQ--------------------------------------------------NLYKH 1292
             YCYQ                                                  N++ H
Sbjct: 1136 DYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSH 1195

Query: 1293 LQHCSTLLLSQITEYVKS-FPKPGETTD--SGPSMKAPKALGDLLESIVGAVLIDTKLNL 1349
            LQH S +LL QITEYV+S     G+ ++     + K PK LGD++ESI GAV IDT  N+
Sbjct: 1196 LQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNV 1255

Query: 1350 DEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKD 1409
            D VW IF+P+LSP++TPDKL LPP REL+ELC  +G F+   CT KGE V  E+ LQL+D
Sbjct: 1256 DMVWEIFEPLLSPLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEEVIIEMSLQLRD 1315

Query: 1410 VLLVGEGQERSRKAAKGKAASQLLKKLE 1437
             LLV +G +R++K AK KAAS++L  L+
Sbjct: 1316 ELLVAQGHDRNKKRAKAKAASRILADLK 1343


>gi|357140713|ref|XP_003571908.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog
            3b-like [Brachypodium distachyon]
          Length = 1414

 Score = 1112 bits (2875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1451 (42%), Positives = 850/1451 (58%), Gaps = 214/1451 (14%)

Query: 49   YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN-GFKKLIIFLAPTVHLVH 107
            YQ++VFE A   NTIAVL+TG+GKTM+AVML ++  + +++    ++ ++FLAPTVHLVH
Sbjct: 23   YQVEVFEAALVGNTIAVLDTGSGKTMVAVMLAREHVRRVRAGEAPRRTVVFLAPTVHLVH 82

Query: 108  QQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
            QQ++VI  +TD +  E YGA GV  W ++ W++E+   ++ VMTPQILLDALR AF+++ 
Sbjct: 83   QQFEVISEYTDLDATECYGASGVGGWSAEHWKEEVGSKEIAVMTPQILLDALRHAFVTMS 142

Query: 168  IVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQIS 227
            +V  +++DECH A GNHPYT+IMK                                    
Sbjct: 143  VVSLLILDECHRACGNHPYTQIMK------------------------------------ 166

Query: 228  ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSK 287
                     V+ I+D++E+E F P A    ++YD       DLK KL++ + +FDA L  
Sbjct: 167  ---------VYIIKDRSELESFSPPATIVNKYYDAYLVDFEDLKSKLQILFEEFDALLVS 217

Query: 288  LQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE--KVLKAQE 345
            LQ S  N ++D ++  +T RK L  YH KILY L+ LG I   E VKI  E  K L   E
Sbjct: 218  LQESSPNKFEDTNNILETSRKSLCRYHGKILYGLNYLGPIITAEVVKIYSESIKALGDSE 277

Query: 346  ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQL 405
            +C      +L   YF +E L +I   LP      +      ++    GYIS+K+  L+ +
Sbjct: 278  DCFSKAGFNLHVSYF-KEALDLIQEVLPQGYDELMKSESGSAELSKRGYISSKVDTLINI 336

Query: 406  FLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKE 465
            F SFG S +VLC+IFVERI+ AK VERF++ +   +  +++YLTG +TS DAL+P VQ+ 
Sbjct: 337  FKSFGSSNEVLCLIFVERIMTAKAVERFMRGIVNFSRFSISYLTGGSTSKDALSPAVQQF 396

Query: 466  VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
             L+ FR GKVNLLF TDV EEG+ VPNCS VIRFDLP+TVSSY+QSRGRAR+ +S ++LM
Sbjct: 397  TLDLFRAGKVNLLFTTDVTEEGIDVPNCSCVIRFDLPRTVSSYVQSRGRARKSSSNYVLM 456

Query: 526  LERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDS 585
            +ERGN++Q+ ++F II++E  +   AL R             K  +Y V+STGA++T + 
Sbjct: 457  IERGNMEQQEQIFRIIQTEYYIKHFALYRRANVSSYDLPMQDK-HTYHVDSTGATITAEC 515

Query: 586  SVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSK 645
             VNLI +YCE LP D+YY PKP ++    + +Y+C L LP NA FQ I+GP+    NL+K
Sbjct: 516  CVNLIRKYCEKLPKDRYYMPKPSYEMAVEDGSYQCTLILPPNAAFQRIIGPSCSTGNLAK 575

Query: 646  QLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRA 705
            QLV LEAC+KLHQ+G L+DHL+P  E P +        + + G GTTKRKELHGTT + A
Sbjct: 576  QLVSLEACKKLHQLGELDDHLVPLTEGPMDIGNSRTNEKCISGPGTTKRKELHGTTSVLA 635

Query: 706  LSGRWG-EKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV-SKTV 763
            L+G W  E   V L+AY+F+F C    E Y+GFVLL+ES LD+DV   +++L+L+ +K V
Sbjct: 636  LTGTWTHESENVSLNAYRFDFRCDQEGENYAGFVLLMESALDDDVACSKMDLFLIPNKMV 695

Query: 764  KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG-SREFFLKRETNSLWSP 822
              T++  G++ L+  Q+ + K FQE FFNG+FG+LF  S++SG  REF  ++     WS 
Sbjct: 696  YTTITPCGKIQLNKKQLREGKLFQEFFFNGIFGRLFHGSRTSGVQREFIFRKGYEIQWSS 755

Query: 823  SYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRT 882
              MYLLLPL   ++       INW  I  C   +E ++        +  N   N   CR+
Sbjct: 756  ESMYLLLPL-CYSSHIQHDLSINWEAIGFCTDALEQLRNM----YTEDGNLHANFIQCRS 810

Query: 883  SPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD 942
                    G+D+IH+AN S+   ++KD VVL++HTGRIYS+++++ +++AE  FD     
Sbjct: 811  ------IKGEDMIHMANKSLRVSSIKDSVVLSLHTGRIYSVLDLIIDTTAEDSFD----- 859

Query: 943  DSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQ 1002
                      E YG      G PLL                               +K Q
Sbjct: 860  ----------EMYGPT----GNPLL------------------------------MEKEQ 875

Query: 1003 MHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLI 1062
            +H  +PPELL+ +D                                             I
Sbjct: 876  IHARVPPELLIHID---------------------------------------------I 890

Query: 1063 LEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
            LEA+TTL CCE+FS+ERLELLGDSVLKY + C LFL YP KHEG LS  RS AVCN+ LH
Sbjct: 891  LEAITTLRCCETFSLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCNAKLH 950

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
            K G  R LQGYIRDSAFDPRRWVAPGQ+SLRP PC CG++T  VP +G +   D   VVG
Sbjct: 951  KHGVWRSLQGYIRDSAFDPRRWVAPGQISLRPFPCNCGIETSFVPTNGMYIRDDPSFVVG 1010

Query: 1183 KPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRA 1242
            KPCD GHRWM SKTI+DC EAL+GAYYVGGG+IAAL++M+W GI+   +  LV +    A
Sbjct: 1011 KPCDKGHRWMCSKTISDCVEALVGAYYVGGGIIAALWVMRWFGIEIKCDRKLVQEVKLNA 1070

Query: 1243 SLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ------------ 1287
            S   Y+P+ N+I ++E K+ Y F+VK LL EAITH S QE    YCYQ            
Sbjct: 1071 SYICYLPKTNDIDELEVKLKYNFSVKGLLLEAITHPSAQESGVDYCYQRLEFLGDCVLDL 1130

Query: 1288 --------------------------------------NLYKHLQHCSTLLLSQITEYVK 1309
                                                  N++ HLQH S +LL QITEYV+
Sbjct: 1131 LITQYLYVTHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGVLLEQITEYVR 1190

Query: 1310 -SFPKPGETTD--SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTP 1366
             +    G+  +     + K PK LGD++ESI GA+ IDT  N+D +W I +P+LSP++TP
Sbjct: 1191 FNLECQGKENEFLQHSTCKVPKVLGDIMESIAGAIFIDTDFNVDLLWNIVEPLLSPMITP 1250

Query: 1367 DKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKG 1426
            + L LPP REL+ELC  LGYF+    + KGE V  E+ +QL+D LLV +G + ++K+AK 
Sbjct: 1251 ENLALPPYRELLELCSHLGYFINSKYSSKGEEVIIEMSVQLRDELLVAQGHDSNKKSAKA 1310

Query: 1427 KAASQLLKKLE 1437
            KAA+++L  L+
Sbjct: 1311 KAAARILADLK 1321


>gi|414871004|tpg|DAA49561.1| TPA: hypothetical protein ZEAMMB73_299457, partial [Zea mays]
          Length = 1199

 Score = 1075 bits (2780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/1215 (47%), Positives = 774/1215 (63%), Gaps = 101/1215 (8%)

Query: 393  GYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGST 452
            GYIS+K+  L+ +F SFG S +VLC+IFVERI  AK VERF++     +  +++YLTG +
Sbjct: 14   GYISSKVESLINIFKSFGSSEEVLCMIFVERITTAKAVERFMRGNVNFSRFSISYLTGGS 73

Query: 453  TSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
            TS DAL+P VQ+  L+ FR GKVNLLF TDV EEG+ VPNCS VIRFDLP+TV SY+QSR
Sbjct: 74   TSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEGIDVPNCSCVIRFDLPRTVCSYVQSR 133

Query: 513  GRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSY 572
            GRAR+ +S ++LM+ERGNL Q+  +F IIR+E  V   AL + P    L      K   Y
Sbjct: 134  GRARKSSSSYVLMIERGNLAQQEHIFRIIRTEYYVKTFALHKQPNTPSLDLPLQEKY-IY 192

Query: 573  IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQT 632
             VESTGA++T +  VNLI++YCE LP D+YY PKP F+    + +Y+C LT+P NA F++
Sbjct: 193  HVESTGATITAECCVNLIYKYCEKLPKDRYYLPKPCFEVGLKDGSYQCTLTMPHNAAFRS 252

Query: 633  IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTT 692
            IVGP S + NL+KQLVCLEAC+KLH++G L+DHL+P  EEP + +  +   + + G GTT
Sbjct: 253  IVGPPSSSCNLAKQLVCLEACKKLHELGELDDHLVPLTEEPMDIDTDTTDKKCVSGPGTT 312

Query: 693  KRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGN 751
            KRKELHGT  +  LSG W  E   VIL+AY F+F C    E+Y+GFVLL+ES LD+DV  
Sbjct: 313  KRKELHGTINVHGLSGNWIHESETVILNAYTFDFRCDQEGELYAGFVLLMESVLDDDVAR 372

Query: 752  FELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG-SRE 809
             E++L+L+ +K V  T++  G++ L+ +Q+ K K FQE FFNG+FG+LF  S++    RE
Sbjct: 373  SEIDLFLIPNKMVYTTMTPCGKIQLNKEQLCKGKLFQEFFFNGIFGRLFHGSRTDELQRE 432

Query: 810  FFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQ 869
            F   +     W    MYLLLPL   +        I W  +  C+  VE ++         
Sbjct: 433  FIFTKGHEIQWGSDNMYLLLPLRNSSQIQHDP-NIYWEAVESCSGTVEQLRNLYL----- 486

Query: 870  CNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNN 929
                 GN +       K    G+D+IHLAN S+    +KD VVL++HTGRIYS+++++ +
Sbjct: 487  ---EDGNLNHENLCSHKRSNKGEDIIHLANKSLHFSTVKDSVVLSLHTGRIYSVLDLILD 543

Query: 930  SSAESPFDGNTDDDSK---TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL---VNFN 983
             +A+  FD   +  +    +FV+Y+ +KYGIV+ HPGQPLL LKQSHN HNLL   + + 
Sbjct: 544  KTADDSFDEMYNGKASPFASFVDYYHQKYGIVIQHPGQPLLLLKQSHNAHNLLFSKMKYQ 603

Query: 984  DGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQ 1043
            DG      + + +  +K Q+H  +PPELL+ +DV   ++KS YLLPSVM R++SLMLASQ
Sbjct: 604  DGS-----TGNPLLVEKEQIHARVPPELLIHIDVATDILKSFYLLPSVMHRVQSLMLASQ 658

Query: 1044 LREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKK 1103
            LR  I+   R   IPSSLILEA+TTL CCESFS+ERLELLGDSVLKY + C LFL YP K
Sbjct: 659  LRSNISYIQR---IPSSLILEAITTLRCCESFSLERLELLGDSVLKYVIGCDLFLRYPMK 715

Query: 1104 HEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDT 1163
            HEG LS  RS AVCN+TLHK G  + LQGYIRD+AFDPRRWVAPGQ+SLRP PC CG++T
Sbjct: 716  HEGHLSDMRSKAVCNATLHKHGIWQSLQGYIRDAAFDPRRWVAPGQISLRPFPCNCGIET 775

Query: 1164 LEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKW 1223
              VP +G + + D   VVGKPCD GHRWM SKT++DC EAL+GAYYVGGG+ AA+++M+W
Sbjct: 776  AFVPFNGGYISDDPSFVVGKPCDRGHRWMCSKTVSDCVEALVGAYYVGGGIAAAIWVMRW 835

Query: 1224 LGIDADLEVSLVDDCI--TRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             GID   ++ LV      + AS   Y+ +I +I+++E+K+ Y F+VK LL EAI+H SVQ
Sbjct: 836  FGIDVRCDMELVQKAKYNSNASRMCYLSKIKDIEELEAKLKYNFSVKGLLLEAISHPSVQ 895

Query: 1282 EF---YCYQ--------------------------------------------------N 1288
            E    YCYQ                                                  N
Sbjct: 896  ELGVDYCYQRLEFLGDSVLDLLITQHLYATHTDVDPGELTDLRSASVSNENFAQAVVRNN 955

Query: 1289 LYKHLQHCSTLLLSQITEYVKS-FPKPGETTD--SGPSMKAPKALGDLLESIVGAVLIDT 1345
            ++ HLQH S +LL Q+TEYV+S     G+        + KAPK LGD++ESI GA+ ID 
Sbjct: 956  IHNHLQHGSGILLEQVTEYVRSNLEYHGKENQFLQQATCKAPKVLGDIMESITGAIFIDV 1015

Query: 1346 KLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRL 1405
              ++D VW+I +P+LSP++TPDKL LPP REL+ELC  LG F++  CT +GE +  E+++
Sbjct: 1016 NFDVDLVWKIVEPLLSPMITPDKLALPPYRELLELCSHLGCFIESKCTSEGEELIIEMKV 1075

Query: 1406 QLKDVLLVGEGQERSRKAAKGKAASQLL---KKLEVCEKR-ISKGASNTGKLGDDCRQTT 1461
            QL+D  L+ +G +R+ K AK  AA+++L   KK  +  K+ ISK  +N   +     Q+ 
Sbjct: 1076 QLRDEQLIAQGHDRNGKTAKANAAARILVDMKKRGLSLKQCISK--ANQLDIVSSKLQSE 1133

Query: 1462 KEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTM 1521
              +L     C    GT   +  G S  +A        VV P+ M KGGPRT+LF+LCK++
Sbjct: 1134 LTNLESRHDCPHMNGT---LSLGLSSARA-------AVVLPLKMDKGGPRTALFRLCKSL 1183

Query: 1522 LWPMPTFETTESKSR 1536
             WP+P FE  E + R
Sbjct: 1184 QWPIPEFEFVEQRFR 1198


>gi|78099743|gb|ABB20894.1| dicer-like protein [Oryza sativa Indica Group]
          Length = 1116

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/1136 (46%), Positives = 715/1136 (62%), Gaps = 95/1136 (8%)

Query: 525  MLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTD 584
            M+ERGNL+Q+  +F +I++   V + AL R P A      +     +Y V+STGA++T D
Sbjct: 1    MIERGNLQQQEHIFRMIQTGYYVKNCALYRHPNALSYDL-SIQGMYTYQVQSTGATITAD 59

Query: 585  SSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLS 644
              VNLI +YCE LP D+Y+ PKP F+    +  ++C LTLP NA FQ+IVGP S + NLS
Sbjct: 60   CCVNLIRKYCEKLPKDRYFMPKPSFEVTIEDGLFKCTLTLPRNAAFQSIVGPLSSSSNLS 119

Query: 645  KQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIR 704
            KQLV LEAC+KLHQ+G LNDHL+P  EEP + +  +   + + G GTTKRKELHGTT + 
Sbjct: 120  KQLVSLEACKKLHQLGELNDHLVPLTEEPMDTDFTTADEKCISGPGTTKRKELHGTTCVL 179

Query: 705  ALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV-SKT 762
            ALSG W  +   + L+ Y+ +F C    E Y+GFVLL+E ELD+DV   +++L+L+ +K 
Sbjct: 180  ALSGTWIHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELDDDVAPSKMDLFLIPNKM 239

Query: 763  VKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGS-REFFLKRETNSLWS 821
            V  TV+  G+V L+  Q+ K K FQE FFNG+FG+LF  S+ SG+ R+F  K+     W+
Sbjct: 240  VYTTVTPRGKVQLNKKQLGKGKLFQEFFFNGIFGRLFHGSRKSGAQRDFIFKKGHEIQWN 299

Query: 822  PSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCR 881
               MYLLLPL   +   D    I+W  I  CA  VE +   S+ G         N  P  
Sbjct: 300  TESMYLLLPLRDSSYIQD-DLSIHWEAIESCAGAVEQLW-SSYQGDE-------NVIPVN 350

Query: 882  TSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTD 941
              P K     +++IHLAN S+   ++KD VVL++HTGRIY++++++ +++AE  FD    
Sbjct: 351  CIPQKRSGGQEEIIHLANKSLHCSSIKDSVVLSLHTGRIYTVLDLILDTTAEDSFDEMCK 410

Query: 942  DDSK---TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL---VNFNDGGGSGKGSKSG 995
              +    +FV+Y+ +KYGI++ HP QPLL LKQSHN HNLL   + + DG  +GK     
Sbjct: 411  GKASPFTSFVDYYHQKYGIIIQHPEQPLLLLKQSHNAHNLLFSKLKYLDGS-TGKP---- 465

Query: 996  MNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNF 1055
            +  +K Q+H  +PPELL+ +DV   ++KS YLLPSV+ RL+SLMLASQLR EI     N 
Sbjct: 466  LLMEKEQIHARVPPELLIHLDVTTDILKSFYLLPSVIHRLQSLMLASQLRREIG---YNQ 522

Query: 1056 HIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWA 1115
            HIP +LILEA+TTL CCE+FS+ERLELLGDSVLKY V C LFL YP KHEGQLS  RS A
Sbjct: 523  HIPVTLILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKA 582

Query: 1116 VCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQ 1175
            VCN+TLHK G  R LQGY+RD+AFDPRRWVAPGQ+SLRP PC CG++T  VP   ++   
Sbjct: 583  VCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRRYIRD 642

Query: 1176 DTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLV 1235
            D   VVGKPCD GHRWM SKTI+DC EAL+GAYYVGGG+ AAL++M+W GID   ++ L+
Sbjct: 643  DPSFVVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGIDIKCDMKLL 702

Query: 1236 DDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ----- 1287
             +    AS    + +IN+I+++E+K+ Y F+VK LL EAITH S+QE    YCYQ     
Sbjct: 703  QEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFL 762

Query: 1288 ---------------------------------------------NLYKHLQHCSTLLLS 1302
                                                         N++ HLQH S +LL 
Sbjct: 763  GDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLG 822

Query: 1303 QITEYVKS-FPKPGETTD--SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPI 1359
            QITEYV+S     G+ ++     + K PK LGD++ESI GAV +DT  N+D VW IF+P+
Sbjct: 823  QITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFLDTDFNVDMVWEIFEPL 882

Query: 1360 LSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQER 1419
            LSP++TPDKL LPP REL+ELC  +G F+   CT KGE++  E+ LQL+D LLV +G +R
Sbjct: 883  LSPLITPDKLALPPYRELLELCSHIGCFLNSECTSKGEVI-IEMSLQLRDELLVAQGHDR 941

Query: 1420 SRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEA 1479
            ++K AK KAAS++L  L+     I +  S   +L D      + DL          GT+ 
Sbjct: 942  NKKRAKAKAASRILADLKQQGLSIKQCLSKAKQL-DIVTSDLQFDLTS-------SGTQL 993

Query: 1480 AIP-AGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTL 1538
            +     D        +V   VV P+ M+KGGPR++LF+LCK + WPMP FE  E + RT 
Sbjct: 994  SYSDLNDYHILEGLSSVKKEVVLPLKMEKGGPRSALFKLCKILQWPMPEFEFVEQRFRTP 1053

Query: 1539 LVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELE 1594
            +V  +G    T F+SFVS ITLHIP+   +   G+ R DKKS+ DSA+L+MLH+L+
Sbjct: 1054 IVM-DG-ATTTNFNSFVSTITLHIPDATTITFQGERRTDKKSAQDSASLMMLHKLQ 1107


>gi|168027292|ref|XP_001766164.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
 gi|162682596|gb|EDQ69013.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
          Length = 1460

 Score =  866 bits (2237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/1443 (38%), Positives = 773/1443 (53%), Gaps = 132/1443 (9%)

Query: 49   YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
            YQ + FE A  +NTI  LETG GKT++AV+LIK +A+  +    K+LI+FLAPTV LV Q
Sbjct: 4    YQQQAFEAALNKNTILYLETGCGKTLVAVLLIKSLAKNTRLENDKRLIVFLAPTVILVQQ 63

Query: 109  QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI 168
            Q  VIR+HTD  V EYYG+K VD W    WQ +I + +V+VMTPQ+ L+ L+  FL ++I
Sbjct: 64   QARVIRIHTDLNVGEYYGSKNVDTWSRAEWQTQIAEVEVMVMTPQVFLNNLQHGFLKMNI 123

Query: 169  VCFIVIDECHHATGNHPYTKIMKEFYHKSDNK---PKVFGMTASPVVRKGVSSAMDCEGQ 225
            V  ++ DECHHA  NH Y +IMK FYH + +K   P++FGMTASPV +KGV S++    Q
Sbjct: 124  VELLIFDECHHAHKNHAYAQIMKGFYHVNVDKGRLPRIFGMTASPVTKKGVKSSIGAAEQ 183

Query: 226  ISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKF-CGSDLKGKLEVSWSKFDAS 284
            +  LE  L S+VF  +D+ E+E  VP+A     +YD       +  K ++E    KF+ +
Sbjct: 184  LFGLEDLLKSEVFAFKDREEIEFVVPTAITVEEYYDAPNLDILAPYKEEIEALIIKFEKA 243

Query: 285  LSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQ 344
             +    S    +KD  +    L+++ + +H  + +CL+ELGL CA +A +   +     +
Sbjct: 244  HTDAVASVQAEFKDQTEFIYKLKERANRFHRDVQFCLEELGLWCASKAAEYLFKVDNGLE 303

Query: 345  EECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQ 404
               E  +        F+ E   ++ SA+P      +    +   AV  GY++ K++ L+ 
Sbjct: 304  GFGEAIQAFKRNLNLFMRETCGLLKSAVPEGSARLVK--KELQDAVSKGYLTPKVYHLIG 361

Query: 405  LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTSVDALTPKVQ 463
            +         V  IIFVER +AA V+   V  +  L  +     + G++      T + Q
Sbjct: 362  VLFHKRSMKDVKRIIFVERRMAAVVLAYLVNDLQCLRENFRSESICGASIGPHT-TRREQ 420

Query: 464  KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
            +  + +F  G++NLL AT++ EEG+ V NC  VIRF+LPKT+ S IQSRGRAR+  S +I
Sbjct: 421  QCTMTAFNKGEINLLVATELAEEGIDVKNCGEVIRFNLPKTLRSNIQSRGRARRSGSTYI 480

Query: 524  LMLERGNLKQRNKLFDIIRSERSVTDTALSR------DPEACFLKACTYVKTKSYIVEST 577
            + LERGN  QR++   I +SE SV D A+SR            L  C  +KT  Y V+ T
Sbjct: 481  VFLERGNGAQRDQFSKIKQSELSVRDEAISRVHIHASSAHNSCLPICEPLKT--YRVDCT 538

Query: 578  GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPT 637
            GASV T++S+ L++R+C  LP D+ YTPK  +  +     Y+C++ LP  +P   ++G  
Sbjct: 539  GASVNTETSIELVNRFCSKLPRDESYTPKAEYLSQKVGLLYKCDIKLPFGSPIYEVLGEP 598

Query: 638  SRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVE---EPSENNLISKKNESLPGAGTTKR 694
             R   L+KQ   LEAC +LH+ GAL+D+LLPS++         ++  KN S  G GTT +
Sbjct: 599  QRTSRLAKQATALEACTQLHKAGALDDNLLPSLDFELAADVEKIMQPKNSS--GFGTTAQ 656

Query: 695  KELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVT-EIYSGFVLLIESELDNDVGNF 752
            KELH      A +G W     G +L AY  +F    V  E+++ FVLLI + LD+DV   
Sbjct: 657  KELHSVAEAEAFTGHWHTSSSGAVLFAYYMSFDIHPVEDEMHANFVLLIGAALDDDVSKL 716

Query: 753  ELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFV------KSKSS 805
            E+EL L   +  KA +S  G+  L ADQ+S AK FQ + FNG+F K+        K K  
Sbjct: 717  EIELCLTRGRKAKAKLSPLGRTTLTADQLSNAKLFQTILFNGMFSKMIQPVQENRKRKRE 776

Query: 806  GSREFFLKRETNSLWSPSYMYLLLP--LEIVNTFGDGSWRINWSGINPCASVVEFIKEKS 863
             +   FL  E   LW  +  YLLLP  LE  N  G  +  I+W  I   +SVV+ ++ K 
Sbjct: 777  SAISSFLT-ERMGLWKSNNAYLLLPAVLEGSNDVGTLA-PIDWKIIQATSSVVKNLRFK- 833

Query: 864  FLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSI 923
            FL            S  R  P    C    +    N  V    L D+ VL  HTG IY +
Sbjct: 834  FLEILT-----RPFSFVRRKP-PVNC----LTFAGNHQVATSELVDVAVLTGHTGIIYPV 883

Query: 924  VEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFN 983
            + ++++++A S F G  + + KT+  +F  K+G +L HP QPLL+LKQ+H PHNLL    
Sbjct: 884  LRVLHDTTAHSQFPGEKNREFKTYAEFFKIKHGRMLEHPNQPLLQLKQNHRPHNLLP--A 941

Query: 984  DGG---GSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLML 1040
            D G   G+   SK+ M +      V MPPEL V +    ++V+S Y LPSVM R++S++L
Sbjct: 942  DAGKIEGTPLVSKATMQSTS----VEMPPELCVVLKFSAAIVRSAYWLPSVMHRIKSVVL 997

Query: 1041 ASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTY 1100
            ASQLR  I+       IP   +L+ALTT  C E+F+ME LEL GDS LKYAVS  LFL  
Sbjct: 998  ASQLRRSIDAPK----IPVMEVLKALTTTRCNENFNMEALELFGDSFLKYAVSRKLFLES 1053

Query: 1101 PKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECG 1160
               +EG LS RR  ++CN  LHKL  DR L  YIRD  FDP RW APG L+ + V C C 
Sbjct: 1054 STANEGVLSTRRIRSICNEALHKLAVDRGLSAYIRDCQFDPSRWAAPGMLAAKRVNCHCK 1113

Query: 1161 VDTLEVP----------------LDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEAL 1204
             D L  P                L  K  T+  K  +G  CD GHR++ SKTI+D  EAL
Sbjct: 1114 EDNLLKPFKSTTSKVTGVFGNELLKDKIQTETIKPRIGLTCDKGHRYLCSKTISDVTEAL 1173

Query: 1205 IGAYY-VGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGY 1263
            IGAY   G     AL  M W GID   +  L++     + +        ++K  E +IGY
Sbjct: 1174 IGAYLEYGRNCEGALKFMTWAGIDVHFDSKLMEAASKASPVDLSYDYGEDLKAFEKRIGY 1233

Query: 1264 EFTVKFLLQEAITHASV---QEFYCYQNL------------------------------- 1289
             F  K+L  EA+TH S     +  CYQ L                               
Sbjct: 1234 TFKNKYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTSHPTSTPGLLTSL 1293

Query: 1290 --------------YKHLQHC-----STLLLSQITEYVKSFPKPGETTDSGP----SMKA 1326
                           KH  HC     S  LL QI E+VKSF    +   +       ++A
Sbjct: 1294 RTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFEAADDDQKNSSFGLNGLEA 1353

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGY 1386
            PK LGDL+ESI GA+L+DT  +LD+VW +  P+L PIVTP  L++ P+ EL ELC S GY
Sbjct: 1354 PKVLGDLVESIAGAILVDTCFDLDKVWAVMMPLLEPIVTPATLDIHPVTELEELCMSKGY 1413

Query: 1387 FVK 1389
             +K
Sbjct: 1414 SIK 1416


>gi|157285011|gb|ABV31245.1| dicer-like 3 [Physcomitrella patens]
          Length = 1641

 Score =  849 bits (2193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/1505 (36%), Positives = 772/1505 (51%), Gaps = 165/1505 (10%)

Query: 33   DGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGF 92
            D  +S        PR YQ + FE A  +NTI  LETG GKT++AV+LIK +A+  +    
Sbjct: 55   DADNSQEEQGMLSPRRYQQQAFEAALNKNTILYLETGCGKTLVAVLLIKSLAKNTRLEND 114

Query: 93   KKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTP 152
            K+LI+FLAPTV LV QQ  VIR+HTD  V EYYG+K VD W    WQ +I + +V+VMTP
Sbjct: 115  KRLIVFLAPTVILVQQQARVIRIHTDLNVGEYYGSKNVDTWSRAEWQTQIAEVEVMVMTP 174

Query: 153  QILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK---PKVFGMTAS 209
            Q+ L+ L+  FL ++IV  ++ DECHHA  NH Y +IMK FYH + +K   P++FGMTAS
Sbjct: 175  QVFLNNLQHGFLKMNIVELLIFDECHHAHKNHAYAQIMKGFYHVNVDKGRLPRIFGMTAS 234

Query: 210  PVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKF-CGS 268
            PV +KGV S++    Q+  LE  L S+VF  +D+ E+E  VP+A     +YD       +
Sbjct: 235  PVTKKGVKSSIGAAEQLFGLEDLLKSEVFAFKDREEIEFVVPTAITVEEYYDAPNLDILA 294

Query: 269  DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
              K ++E    KF+ + +    S    +KD  +    L+++ + +H  + +CL+ELGL C
Sbjct: 295  PYKEEIEALIIKFEKAHTDAVASVQAEFKDQTEFIYKLKERANRFHRDVQFCLEELGLWC 354

Query: 329  AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
            A +A +   +     +   E  +        F+ E   ++ SA+P           +   
Sbjct: 355  ASKAAEYLFKVDNGLEGFGEAIQAFKRNLNLFMRETCGLLKSAVP-EGWTAAQTAEELQD 413

Query: 389  AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAY 447
            AV  GY++ K++ L+ +         V  IIFVER +AA V+   V  +  L  +     
Sbjct: 414  AVSKGYLTPKVYHLIGVLFHKRSMKDVKRIIFVERRMAAVVLAYLVNDLQCLRENFRSES 473

Query: 448  LTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
            + G++      T + Q+  + +F  G++NLL AT++ EEG+ V NC  VIRF+LPKT+ S
Sbjct: 474  ICGASIGPHT-TRREQQCTMTAFNKGEINLLVATELAEEGIDVKNCGEVIRFNLPKTLRS 532

Query: 508  YIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSR------DPEACFL 561
             IQSRGRAR+  S +I+ LERGN  QR++   I +SE SV D A+SR            L
Sbjct: 533  NIQSRGRARRSGSTYIVFLERGNGAQRDQFSKIXQSELSVRDEAISRVHIHASSAHNSCL 592

Query: 562  KACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECE 621
              C  +KT  Y V+ TGASV T++S+ L++R+C  LP D+ YTPK  +  +     Y+C+
Sbjct: 593  PICEPLKT--YRVDCTGASVNTETSIELVNRFCSKLPRDESYTPKAEYLSQKVGLLYKCD 650

Query: 622  LTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVE---EPSENNL 678
            + LP  +P   ++G   R   L+KQ   LEAC +LH+ GAL+D+LLPS++         +
Sbjct: 651  IKLPFGSPIYEVLGEPQRTSRLAKQATALEACTQLHKAGALDDNLLPSLDFELAADVEKI 710

Query: 679  ISKKNESLPGAGTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVT-EIYSG 736
            +  KN S  G GTT +KELH      A +G W     G +L AY  +F    V  E+++ 
Sbjct: 711  MQPKNSS--GFGTTAQKELHSVAEAEAFTGHWHTSSSGAVLFAYYMSFDIHPVEDEMHAN 768

Query: 737  FVLLIESELDNDVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLF 795
            FVLLI + LD+DV   E+EL L   +  KA +S  G+  L ADQ+S AK FQ + FNG+F
Sbjct: 769  FVLLIGAALDDDVSKLEIELCLTRGRKAKAKLSPLGRTTLTADQLSNAKLFQTILFNGMF 828

Query: 796  GKLFV------KSKSSGSREFFLKRETNSLWSPSYMYLLLP--LEIVNTFGDGSWRINWS 847
             K+        K K   +   FL  E   LW  +  YLLLP  LE  N  G  +  I+W 
Sbjct: 829  SKMIQPVQENRKRKRESAISSFLT-ERMGLWKSNNAYLLLPAVLEGSNDVGTLA-PIDWK 886

Query: 848  GINPCASVVE--FIKEKSFLGAAQCNNN-------GGNSSPCRTSPCKTGCHGKDVIHLA 898
             I   +SVV+   + E      +Q               S  R  P    C    +    
Sbjct: 887  IIQATSSVVKNLVLPEDPDFKHSQPRKRFKFLEILTRPFSFVRRKP-PVNC----LTFAG 941

Query: 899  NGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 958
            N  V    L D+ VL  HTG IY ++ ++++++A S F G  + + KT+  +F  K+G +
Sbjct: 942  NHQVATSELVDVAVLTGHTGIIYPVLRVLHDTTAHSQFPGEKNREFKTYAEFFKIKHGRM 1001

Query: 959  LIHPGQPLLRLKQSHNPHNLL--------------------------------------V 980
            L HP QPLL+LKQ+H PHNLL                                       
Sbjct: 1002 LEHPNQPLLQLKQNHRPHNLLPADAGKIEGPTGARKMKKIQKTEATLVEARSVEEDFEVY 1061

Query: 981  NFNDGGGSGKGSKSGMNTKKPQM--HVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESL 1038
            N  D   S       + +K       V MPPEL V +    ++V+S Y LPSVM R++S+
Sbjct: 1062 NMKDQANSSLSEVEKVVSKATMQSTSVEMPPELCVVLKFSAAIVRSAYWLPSVMHRIKSV 1121

Query: 1039 MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFL 1098
            +LASQLR  I+       IP   +L+ALTT  C E+F+ME LEL GDS LKYAVS  LFL
Sbjct: 1122 VLASQLRRSIDAPK----IPVMEVLKALTTTRCNENFNMEALELFGDSFLKYAVSRKLFL 1177

Query: 1099 TYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCE 1158
                 +EG LS RR  ++CN  LHKL  DR L  YIRD  FDP RW APG L+ + V C 
Sbjct: 1178 ESSTANEGVLSTRRIRSICNEALHKLAVDRGLSAYIRDCQFDPSRWAAPGMLAAKRVNCH 1237

Query: 1159 CGVDTLEVP----------------LDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAE 1202
            C  D L  P                L  K  T+  K  +G  CD GHR++ SKTI+D  E
Sbjct: 1238 CKEDNLLKPFKSTTSKVTGVFGNELLKDKIQTETIKPRIGLTCDKGHRYLCSKTISDVTE 1297

Query: 1203 ALIGAYY-VGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKI 1261
            ALIGAY   G     AL  M W GID   +  L++     + +        ++K  E +I
Sbjct: 1298 ALIGAYLEYGRNCEGALKFMTWAGIDVHFDSKLMEAASKASPVDLSYDYGEDLKAFEKRI 1357

Query: 1262 GYEFTVKFLLQEAITHASV---QEFYCYQNL----------------------------- 1289
            GY F   +L  EA+TH S     +  CYQ L                             
Sbjct: 1358 GYTFKNIYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTSHPTSTPGLLT 1417

Query: 1290 ----------------YKHLQHC-----STLLLSQITEYVKSFPKPGETTDSGP----SM 1324
                             KH  HC     S  LL QI E+VKSF    +   +       +
Sbjct: 1418 SLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFEAADDDQKNSSFGLNGL 1477

Query: 1325 KAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSL 1384
            +APK LGDL+ESI GA+L+DT  +LD+VW +  P+L PIVTP  L++ P+ EL ELC S 
Sbjct: 1478 EAPKVLGDLVESIAGAILVDTCFDLDKVWAVMMPLLEPIVTPATLDIHPVTELEELCMSK 1537

Query: 1385 GYFVK 1389
            GY +K
Sbjct: 1538 GYSIK 1542


>gi|449453061|ref|XP_004144277.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Cucumis sativus]
          Length = 1359

 Score =  844 bits (2181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/747 (58%), Positives = 525/747 (70%), Gaps = 84/747 (11%)

Query: 915  IHTGRIYSIVEIVNNSSAESPFDGNTDD---DSKTFVNYFSEKYGIVLIHPGQPLLRLKQ 971
            +HTGRIYSIVE+V+N+SAESPFDGN+D    D  TF +YF+++YGI L  P QPLLRLKQ
Sbjct: 640  LHTGRIYSIVEVVSNTSAESPFDGNSDKGPPDYITFADYFNKRYGISLSFPKQPLLRLKQ 699

Query: 972  SHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSV 1031
            SHNPHNLLVNF D G +     SG   K+PQMHVHMPPEL++ +DVP  V+KS YLLPS+
Sbjct: 700  SHNPHNLLVNFKDEGNTSDKLPSGPAFKRPQMHVHMPPELVLSMDVPKGVLKSSYLLPSL 759

Query: 1032 MQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYA 1091
            + R ESLMLASQLR+EIN HS +  I SSLILEALTTLG CE+FS+ERLELLGDSVLKYA
Sbjct: 760  IHRFESLMLASQLRKEINYHSNSLGISSSLILEALTTLGSCENFSLERLELLGDSVLKYA 819

Query: 1092 VSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLS 1151
            VSCHLFL +P+KHEGQLS+RR   +CN+TLH LGT   LQGYIRDSAFDPRRWVAPGQ +
Sbjct: 820  VSCHLFLKFPEKHEGQLSSRRQQVICNATLHALGTKCGLQGYIRDSAFDPRRWVAPGQCT 879

Query: 1152 LRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVG 1211
             RPVPC+CGVDT+EVPL  KF T+D KVV+GK CD GHRW+ SKTIADCAEALIGAYYV 
Sbjct: 880  NRPVPCKCGVDTVEVPLHDKFCTEDPKVVLGKCCDKGHRWVVSKTIADCAEALIGAYYVD 939

Query: 1212 GGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLL 1271
            GG+IAAL++MKWLGID +L+V+LV D IT ASLRS      EI  +ESKIGY+F VK LL
Sbjct: 940  GGIIAALHVMKWLGIDVNLDVALVVDAITSASLRSCPLGDTEIATLESKIGYDFAVKGLL 999

Query: 1272 QEAITHASVQEF---YCYQ----------------------------------------- 1287
             EA+TH S QE    YCYQ                                         
Sbjct: 1000 LEAVTHTSDQEIGVNYCYQRLEFLGDSVLDLLITWHYYQNYSDIDPGELTDLRSASVNNE 1059

Query: 1288 ---------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIV 1338
                     NL +HLQHCS LL+SQITEYVK   +  +T       K PK LGD++ESI 
Sbjct: 1060 NFAQVAVRRNLQQHLQHCSGLLMSQITEYVKYLSESQDTGKPLHGNKGPKVLGDMVESIA 1119

Query: 1339 GAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEM 1398
            GA+LIDTKLNLDEVW+I+KP+L+P VTPDKLELPPLRELIELCDSLGYF+K+ CT KGE 
Sbjct: 1120 GAILIDTKLNLDEVWKIYKPLLTPFVTPDKLELPPLRELIELCDSLGYFIKDKCTRKGET 1179

Query: 1399 VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCR 1458
             HAELRLQL+D LL+GEG ER+RKAA+G+AA +LL +LE      ++G S +       +
Sbjct: 1180 FHAELRLQLQDSLLIGEGYERTRKAARGEAAHRLLAQLE------TRGISYSRSGSKKRK 1233

Query: 1459 QTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYC-MTVGTPVVAPINMKKGGPRTSLFQL 1517
            Q    D            +   +P+  +C    C   V TPV+ PIN+KKGGPR++LF+L
Sbjct: 1234 QNPSHD-----------ESAMVLPSSVNCSTDACDPNVETPVIGPINLKKGGPRSTLFEL 1282

Query: 1518 CKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRAD 1577
            CK +L+            R  +   EGLEKR GF+SF+S ITL IP  G VEC G+ RAD
Sbjct: 1283 CKKLLYWY----------RVQIEIGEGLEKRKGFNSFLSNITLQIPNAGYVECEGEARAD 1332

Query: 1578 KKSSFDSAALIMLHELERQGKIIISSS 1604
            KKSSFDSA+L+ML EL++QG++II+ S
Sbjct: 1333 KKSSFDSASLVMLQELQQQGRVIINDS 1359



 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/604 (66%), Positives = 488/604 (80%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           FIPR YQ++VFEV  RRNTIAVL TG+GKTMIAVMLIK+I +A+KS+  KKLIIFLAPTV
Sbjct: 37  FIPRRYQMEVFEVGMRRNTIAVLGTGSGKTMIAVMLIKEIGKAMKSSSDKKLIIFLAPTV 96

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
           HLVHQQ++VI+ HTDFEV EYYGA GVD+W+  CW+KE ++ DVLVMTPQILLDALRKA+
Sbjct: 97  HLVHQQFNVIKDHTDFEVAEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAY 156

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
             L  +C ++IDECH ATGNHPYTKIMKEFYHKSD+KPK+FGMTASPV+RKGVSS++DCE
Sbjct: 157 FRLGTICLMIIDECHRATGNHPYTKIMKEFYHKSDSKPKIFGMTASPVIRKGVSSSVDCE 216

Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDA 283
            QI++LES LD+QV+ IEDK E+E++VPSAKE C FY+ +     +LK K+E  W KFDA
Sbjct: 217 CQIADLESILDAQVYAIEDKKEVEIYVPSAKEICIFYEPAMPQTMELKAKIEALWFKFDA 276

Query: 284 SLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKA 343
           SLS  Q +    YKD+D K K L+K+LS  H KI YCLDELG++CAYEA+K+  E V   
Sbjct: 277 SLSNSQEAMQGHYKDVDSKLKALKKRLSSDHLKITYCLDELGIMCAYEAIKVLFENVSVP 336

Query: 344 QEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELL 403
            EE ++YR+S LQ K+FLEE L VIG +L L ++     GFD  KAV+LGYIS KL ELL
Sbjct: 337 NEESDVYRESFLQYKHFLEEALLVIGESLSLENENVPTLGFDLWKAVELGYISPKLFELL 396

Query: 404 QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQ 463
           QLF SFG S QVLC+IFVERIIAA V+ER VKKV  L+H TV+Y+TG   SV AL PKVQ
Sbjct: 397 QLFESFGVSRQVLCLIFVERIIAANVIERIVKKVENLSHFTVSYVTGCNASVGALAPKVQ 456

Query: 464 KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
           KE LE F  GK+NLLF+TDV+EEG+HVPNCS+V+RFDLPKTV SY+QSRGRARQ+NSQ+I
Sbjct: 457 KETLELFCHGKLNLLFSTDVVEEGLHVPNCSFVVRFDLPKTVRSYVQSRGRARQNNSQYI 516

Query: 524 LMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTT 583
           L+LERGNLKQR  LFD+IRS+RS+TD A+SRD +AC LK  + ++T  YIVE+TGASVT 
Sbjct: 517 LLLERGNLKQRALLFDVIRSDRSMTDAAMSRDLDACVLKPFSLMETDCYIVEATGASVTA 576

Query: 584 DSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNL 643
           DSSV L+++YC+ LP DKY++PKPIF+    E +YEC+LTLP  A  QTIVGP++RN NL
Sbjct: 577 DSSVGLVYQYCKKLPGDKYFSPKPIFQLSYGEGSYECQLTLPPTAALQTIVGPSTRNSNL 636

Query: 644 SKQL 647
           SKQL
Sbjct: 637 SKQL 640


>gi|357131511|ref|XP_003567380.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Brachypodium
            distachyon]
          Length = 1183

 Score =  839 bits (2168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1165 (42%), Positives = 676/1165 (58%), Gaps = 114/1165 (9%)

Query: 514  RARQHNSQFILMLERGNLKQRNKLFDII-RSERSVTDTALSRDPEACFLKACTYVKTKSY 572
            R ++ N++      RG   ++N L   I RS+ S+ +TA +RD +   L   + VK ++ 
Sbjct: 53   RQKRQNTECQDFTPRGVDAEQNNLASAISRSKTSMVETAFNRDSKD-LLPHLSPVKDRNG 111

Query: 573  IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQT 632
                T A  T DSS+++I  YC+ LP DKY+T +P F++   ++ + C LTLPS+     
Sbjct: 112  CHIGT-AGATVDSSISIISEYCDKLPKDKYHTTRPSFEFTHHDDGFVCTLTLPSSDVLPP 170

Query: 633  IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTT 692
            + GP +R+K  +KQLVCL+AC++L  +G  +D L PS++EP    +++K +     AG  
Sbjct: 171  LEGPKARSKQKAKQLVCLDACKQLDLLGVHDDCLCPSLKEPPVE-IVNKASVLTSNAGVQ 229

Query: 693  KRKELHGTTPIRALSGRWGEKCGVI-LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGN 751
            KRKELHGTT   A SG W  K  VI L  YK NF+C  V + YS FVLLI++ + N+  N
Sbjct: 230  KRKELHGTTRACAFSGTWASKRTVIKLQGYKLNFSCDQVGQKYSEFVLLIDTTIANEAAN 289

Query: 752  FELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGS-REF 810
             ++ LYL  K VKA+VS  G + LD  QM + K FQ L FNGLFGKLF  SKSS S REF
Sbjct: 290  LDINLYLHDKMVKASVSPCGLLELDVQQMEQVKLFQALIFNGLFGKLFTGSKSSNSSREF 349

Query: 811  FLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKE------KSF 864
             L ++ N +W+ + MYLLLP++      D S+ INW  I+  A+ V  +++       + 
Sbjct: 350  ILNKDDNLIWNNANMYLLLPMDPTLESHD-SFCINWRVIDEAATAVRLMRKIHSDGKMNL 408

Query: 865  LGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIV 924
            L     +   G                 D+IHLAN S +   L+++ VLA+HTG+IY+ +
Sbjct: 409  LAILDFDQIYG-----------------DLIHLANTSCEVHTLRNVAVLAVHTGKIYTAL 451

Query: 925  EIVNNSSAESPFDG---NTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVN 981
              V + SA S FDG     +   KTF  YF +KY IVL HP QPLL LK SHNPHNLL +
Sbjct: 452  H-VTDLSANSTFDGVSSKKESGFKTFTEYFEKKYDIVLRHPSQPLLVLKPSHNPHNLLSS 510

Query: 982  --FNDGGGSGKGSKSGM-NTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESL 1038
               ++G   G+    G  +  K    VHMPPELL+ +++P  ++++ YL PS+M R+E+L
Sbjct: 511  KIRDEGPCYGENKNDGTTDVIKVNNRVHMPPELLIPLNLPEDILRAFYLFPSLMYRMETL 570

Query: 1039 MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFL 1098
            MLASQLR EI   S   +I S LILEA+TTL C E FSMERLELLGDSVLKYAVSCHLFL
Sbjct: 571  MLASQLRSEIAYDS---NISSFLILEAITTLRCSEDFSMERLELLGDSVLKYAVSCHLFL 627

Query: 1099 TYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCE 1158
             +P KHEGQLS+ R   + N+ LH+LG   K+QGYIRD+AFDPRRW+APGQ + RP  C+
Sbjct: 628  KFPDKHEGQLSSSRIDIISNAALHRLGIKHKIQGYIRDAAFDPRRWLAPGQRTNRPFHCK 687

Query: 1159 CGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAAL 1218
            C VD   V  D     +   + +G+ CD GHRWM SKTI+DC EA+IGAYYVGGGL AA+
Sbjct: 688  CPVDYEVVTKDIHVIDEKPTIKIGQACDKGHRWMCSKTISDCVEAIIGAYYVGGGLRAAV 747

Query: 1219 YMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHA 1278
             +++WLG+DA++E  L+   I  AS+++YVP+I+ ++ +E+K+GY F+VK LL EA+TH 
Sbjct: 748  AVLRWLGVDAEIEEELIMQTILSASMKTYVPKIDLVEALEAKLGYAFSVKGLLLEALTHP 807

Query: 1279 SVQEF---YCYQNL---------------------------------------------Y 1290
            S QE    Y Y+ L                                              
Sbjct: 808  SHQESEERYSYERLEFLGDAALDILLTWHLFSSHKDTDEGELTDLRSASVNNENFAKVAV 867

Query: 1291 KH-----LQHCSTLLLSQITEYVKSFPKPGE---TTDSGPSMKAPKALGDLLESIVGAVL 1342
            KH     LQ  S +LL QITEY  S            S   ++ PK LGD++ESI GA+L
Sbjct: 868  KHKLHHFLQQSSGILLDQITEYANSLENSSMDEINLSSDAPLRGPKVLGDIVESIAGAIL 927

Query: 1343 IDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAE 1402
            IDTKL+LD V  +FKP+LSPIVTP+ LELPP REL+E C+  GYF+   CT  G+ + A 
Sbjct: 928  IDTKLDLDVVRGVFKPLLSPIVTPENLELPPFRELLEWCNKNGYFLGIKCT-DGDKIQAI 986

Query: 1403 LRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTK 1462
            L +QL+DVL++  G  +++K AK  AAS LLK LE     ISK A  T +    C     
Sbjct: 987  LDVQLEDVLVIRRGFGKNKKDAKAHAASMLLKDLEEKGFIISKNAIRTEQFQKQCGSENS 1046

Query: 1463 ----EDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLC 1518
                 D  +        G E+A P  D            PV   +   KGGPR +L++ C
Sbjct: 1047 CYNMFDAMDTQVLTPFWGNESAGPVLDK-----------PVHVAVKTSKGGPRVALYEFC 1095

Query: 1519 KTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSS--FVSKITLHIPEFGNVECNGDPRA 1576
            K + WP P F++ +    +      G   +   +   F S ITLH+P    +   GD  A
Sbjct: 1096 KKLQWPAPKFDSVKVLPSSACPPSGGSSVKATPTQEFFASTITLHMPNSDVISLTGDGFA 1155

Query: 1577 DKKSSFDSAALIMLHELERQGKIII 1601
            DKKSS DSAAL+MLHEL+R+G++ +
Sbjct: 1156 DKKSSQDSAALLMLHELQRRGRLQV 1180


>gi|302819693|ref|XP_002991516.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
 gi|300140718|gb|EFJ07438.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
          Length = 1719

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1465 (35%), Positives = 764/1465 (52%), Gaps = 185/1465 (12%)

Query: 49   YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
            YQ  VF+ A + N I  L TG GKTMIA+MLI+   + +     K++ +FLAPTV+LV Q
Sbjct: 359  YQKDVFQRALKENIIVNLGTGTGKTMIAIMLIQSFEERLSMPQEKRIAVFLAPTVNLVIQ 418

Query: 109  QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI 168
            Q   I   T  +V +YYG KGVD W    WQ E++ + VLVMTPQ+ L+AL  + L L+ 
Sbjct: 419  QARAIESFTVLKVGDYYGDKGVDSWSVNQWQAEVDSHQVLVMTPQVFLNALGTSALKLEF 478

Query: 169  VCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEGQI 226
            V  +V+DECHHA  NHPY  IMK  YH S   +KPK+FGMTASPV++KGVSS+ DC  ++
Sbjct: 479  VEVLVMDECHHAHKNHPYALIMKTHYHVSCLKSKPKIFGMTASPVIQKGVSSSYDCNRKL 538

Query: 227  SELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLS 286
            + LES LD++V+T+EDK+E+E + P+  +   +YD+ K   S ++ +LE+   + ++   
Sbjct: 539  TVLESILDAKVYTVEDKSEVEEYYPNPTQYKEYYDRPKQRFSSIQTELEILKDRLNSE-- 596

Query: 287  KLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE 346
                +  NC  D + ++K ++K +   H  I +CL +LGL+ A  AV+I L+   K+   
Sbjct: 597  ----AACNC-SDYELQNK-IKKSIDRLHLSINHCLVDLGLLPALLAVEI-LQNRNKSTFH 649

Query: 347  CEIYRQSSLQ---CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELL 403
             +     SL+    K  L+E      S++P   ++     +   + +  G +S K+  LL
Sbjct: 650  SKWKPDVSLEEEEVKTSLKERFLQNVSSIPRFSQVS-SRSYPTLEEMTSGTLSPKVLVLL 708

Query: 404  QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQ 463
             +       T + CI+FVER+I A  + + + ++ FL+HL   Y+TG     DA  P  Q
Sbjct: 709  DVLERLRGITNMRCIVFVERVIVAMALAKLISRLSFLSHLRCDYMTG-VRDTDARNPTQQ 767

Query: 464  KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH-NSQF 522
            +EVL++F GGK+NLL AT V EEG+ V  C  VIRFD+ +T+ S++QSRGRAR   +S +
Sbjct: 768  QEVLDAFAGGKLNLLIATSVAEEGLDVQACCAVIRFDVCQTLRSHVQSRGRARNRLSSTY 827

Query: 523  ILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVT 582
            + +LE GN++Q N    +  SER V D                                 
Sbjct: 828  VWLLETGNVEQLNLFNQLCTSERVVED--------------------------------- 854

Query: 583  TDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKN 642
               SV+ IH YC  L  D+YY  KP F +K   +++ C +  P NAP +++ GP  R + 
Sbjct: 855  -QDSVSFIHEYCARL-GDRYYNAKPKFSFK---DSFVCTVEFPPNAPLRSVEGPLRRTEQ 909

Query: 643  LSKQLVCLEACEKLHQVGALN-DHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTT 701
            L+K+  CL+AC KL+ +G +  D L P V++  E +   +KNES       KRKE+  T 
Sbjct: 910  LAKKAACLQACRKLYDMGEVRPDTLCPDVDDFDEEDQSMRKNES------GKRKEIFSTA 963

Query: 702  PIRALSGRW-GEKCGVILHAYKFNFACSIV-TEIYSGFVLLIESELDNDVGNFELELYLV 759
                  G W   + GV L  YK  F      +  YS F  L+   +D +V + E+ L+  
Sbjct: 964  KPLIFEGSWVFNESGVQLQFYKICFVIEPPESRTYSNFGFLVNCVIDAEVTDSEVTLFSR 1023

Query: 760  SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSL 819
            ++ V A V   G + LDA+Q+  AK +QEL  NG F +L   ++ SGS +         L
Sbjct: 1024 NRVVNARVHRVGPIQLDANQVKAAKAYQELLLNGAFNRL---ARCSGSPQ-------EIL 1073

Query: 820  WSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSP 879
            W+ S  +LLLP+       D +  I+W+ ++  A V   +          C+N    SSP
Sbjct: 1074 WNKSQAFLLLPVH------DDNDSIDWTSVHATAGVYRTL----------CSNFSP-SSP 1116

Query: 880  CRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAES--PFD 937
                      H  DV+  ANG V +  L+DMVV  +H GR++ +  ++ N +A S  P  
Sbjct: 1117 MDGDGVGEKTHA-DVLCTANGYVHSSALQDMVVATVHNGRLFCVTGVLENFTAASLLPKR 1175

Query: 938  GNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMN 997
            G T      +++Y+ +KY   L  P QPLL+ K +H  HNL +   +  GS         
Sbjct: 1176 GFT------YIDYYKDKYQRTLRLPEQPLLKAKPTHAFHNLPIRPKEQEGS--------- 1220

Query: 998  TKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHI 1057
             ++ +  V +PPEL + +++   +++SLY +PS + R  S + A QLR  +        I
Sbjct: 1221 -RQEESFVELPPELCLCLEIKSGLIRSLYFVPSFLHRFTSTVCAIQLRSPLWPW-----I 1274

Query: 1058 PSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1117
            P++ ILEA+T+  C E FS E LELLGDS LKY V+  LFL Y KKHEGQLSARRS A C
Sbjct: 1275 PAAKILEAITSKKCHEEFSYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATC 1334

Query: 1118 NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDT 1177
            N+ LH+L     +  YIRD  F+P  W  PG L+     C     + E   +  +F+   
Sbjct: 1335 NAALHQLAKSSGIAEYIRDEEFNPSNWTGPGMLTSDSSKCRHQQGSYEN--EENYFSS-- 1390

Query: 1178 KVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDD 1237
                   C  GHR +  K +AD  EALIGAY    G  +A+ +MK LGID + ++ L+  
Sbjct: 1391 -------CANGHRGIRRKALADVVEALIGAYLATSGPPSAMELMKQLGIDIEFDIGLLAS 1443

Query: 1238 CITRASL--RSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE-FYCYQN------ 1288
               +ASL   S+      ++ +E K+ Y+F  + LL EAITHAS      CYQ       
Sbjct: 1444 A-RQASLPAESFQHLQASLESLEHKLQYKFQNRSLLVEAITHASQPNCLLCYQRLEFLGD 1502

Query: 1289 --------------------------------------------LYKHLQHCSTLLLSQI 1304
                                                        L++HLQH S  L  +I
Sbjct: 1503 GVLDFLVSRHLFETHPGLPPGTLTDLRSAAVNNKWFARLVLRHGLHQHLQHGSVELDCEI 1562

Query: 1305 TEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1364
             ++V++  K          + APK LGDLLESI GA+ +DT  +L+++WR+  P+LSP+V
Sbjct: 1563 RKFVQNV-KEKPDASCFEDLSAPKVLGDLLESITGAIFVDTNFDLEKLWRVVLPLLSPLV 1621

Query: 1365 TPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAA 1424
            TP  L   P+R L+ELC   G  V      + E    E+R+   +  LV   QE+ RK+A
Sbjct: 1622 TPATLRFHPVRILMELCARKGMKVS---FFRTEATTTEVRVTFGEESLVETSQEKPRKSA 1678

Query: 1425 KGKAASQLLKKL-EVCEKRISKGAS 1448
            K  AA ++L  L E  EK +   AS
Sbjct: 1679 KIDAALKMLASLQEKVEKEMKMLAS 1703


>gi|357129053|ref|XP_003566182.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Brachypodium
            distachyon]
          Length = 1806

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/1021 (44%), Positives = 598/1021 (58%), Gaps = 126/1021 (12%)

Query: 656  LHQVGALNDHLLPSVEEPSENNLISKKN--ESLPGAGTTKRKELHGTTPIRALSGRWGEK 713
            L  +G   D L PSVE+P    +++K +   S  G GTTKRKELHGTT + ALSG W  K
Sbjct: 832  LDLLGVPGDSLCPSVEDPPLE-IVNKASVLTSNAGVGTTKRKELHGTTRVCALSGTWASK 890

Query: 714  CGVI-LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQ 772
              VI L  YK NF+C  V + YS FVLLI++ ++N+  N ++ LYL  K VKA+VS  G 
Sbjct: 891  RTVIKLQGYKLNFSCDQVGQKYSDFVLLIDTTIENEAANLDINLYLHDKMVKASVSPCGL 950

Query: 773  VHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGS-REFFLKRETNSLWSPSYMYLLLPL 831
            + LD  QM KAK FQ L FNGLFGKLF  SKSS S REF L ++ + +W+ + MYLLLP+
Sbjct: 951  LELDVQQMEKAKLFQALIFNGLFGKLFTGSKSSNSPREFILNKDDSLIWNNANMYLLLPM 1010

Query: 832  EIVNTFGDGSWRINWSGINPCASVVEFIKE------KSFLGAAQCNNNGGNSSPCRTSPC 885
            +      D S+ INW  I+  A+ V  +++       + L     + N G          
Sbjct: 1011 DPTLESHD-SFCINWRLIDEAATAVGLMRKVHSDDKMNLLAILDIDQNDG---------- 1059

Query: 886  KTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDS- 944
                   D+IHLAN S +A  L+++ VLA+HTG+IY+ + + + SS  S FDG +D    
Sbjct: 1060 -------DLIHLANTSCEAHVLRNVAVLAVHTGKIYTSLHVTDLSS-NSTFDGVSDKKET 1111

Query: 945  --KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQ 1002
              KTF  YF +KYGIVL HP QPLL LK SHNPHNLL        S K    G    K  
Sbjct: 1112 GFKTFKEYFEKKYGIVLRHPSQPLLVLKPSHNPHNLL--------SSKIRDEGPYVIKVN 1163

Query: 1003 MHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLI 1062
              VHMPPELL+ +++P  ++++ YL PS+M R+E+LMLASQLR E+   S   +I S LI
Sbjct: 1164 NRVHMPPELLIPLNLPEDILRAFYLFPSLMYRMETLMLASQLRSEVAYDS---NISSFLI 1220

Query: 1063 LEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
            LEA+TTL C E FSMERLELLGDSVLKYAVSCHLFL +P KHEGQLS+ R+  + N+ L+
Sbjct: 1221 LEAITTLRCSEDFSMERLELLGDSVLKYAVSCHLFLKFPNKHEGQLSSSRTDIISNAALY 1280

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
            +LG + K+QGYIRD+AFDPRRW+APGQL+ RP  C+C VD+  V  D         + +G
Sbjct: 1281 RLGIEHKIQGYIRDAAFDPRRWLAPGQLTNRPFHCKCPVDSEVVTKDIHVIDDKPTIKIG 1340

Query: 1183 KPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRA 1242
            + CD GHRWM SKTI+DC EA+IGAYYVGGGL AA+  ++WLG+DA++E  L+   I  A
Sbjct: 1341 QACDKGHRWMCSKTISDCVEAIIGAYYVGGGLRAAVAFLRWLGVDAEIEEELIMQTILSA 1400

Query: 1243 SLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQNL---------- 1289
            S+++Y+P+I+  + + +K+GY F+VK LL EA+TH S QE    Y YQ L          
Sbjct: 1401 SMQTYLPKIDLTEALGAKLGYAFSVKGLLLEALTHPSHQESEERYSYQRLEFLGDAALDI 1460

Query: 1290 -----------------------------------YKH-----LQHCSTLLLSQITEYVK 1309
                                                KH     LQH S +LL QITEY  
Sbjct: 1461 LLTWHLFNSHKDTDEGELTDLRSASVNNENFAKVAVKHKFHHFLQHSSEILLDQITEYAN 1520

Query: 1310 SFPKPGE---TTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTP 1366
            S            S   ++ PK LGD++ESI GA+LIDTKL+LD VW +FKP+LSPIVTP
Sbjct: 1521 SLENSSMDEINLSSDAPLRGPKVLGDIVESIAGAILIDTKLDLDVVWGVFKPLLSPIVTP 1580

Query: 1367 DKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKG 1426
            + LELPP REL+E C+  GYF+   CT  GE + A L +QLKD+L+V  G  +++K AK 
Sbjct: 1581 ENLELPPFRELLEWCNRNGYFLGIKCT-DGEKLQAILDVQLKDMLVVRRGFGKNKKDAKA 1639

Query: 1427 KAASQLLKKLEVCEKRISKGASNTGKL------GDDCRQTTKEDLPEPPSCKRQKGTEAA 1480
             AAS LLK LE     ISK A    +        + C      D  +       +G E  
Sbjct: 1640 HAASMLLKDLEEKGLIISKNAIRMEQFEKQWGSANHCHNMF--DAVDTQVLTPARGKEP- 1696

Query: 1481 IPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLV 1540
                          +  PV   +   KGGPR +L++LCK + WP P F +   K++    
Sbjct: 1697 --------------LDKPVHLAVKTSKGGPRIALYELCKKLQWPAPKFVSV--KTQPSAA 1740

Query: 1541 FCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKII 1600
                ++  T   SF S ITLH+P    +   GD  ADKKSS DSAAL+MLHEL+RQG++ 
Sbjct: 1741 GGSSMKATTQEFSFASNITLHVPNSDVISLRGDGFADKKSSQDSAALLMLHELQRQGRLQ 1800

Query: 1601 I 1601
            +
Sbjct: 1801 V 1801



 Score =  118 bits (296), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 82/124 (66%)

Query: 551 ALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK 610
           A+S D E          +   Y V +TGA VT DSSVN+I +YC+ LP DKY+T +P+F+
Sbjct: 611 AVSTDSEDLLPAFFPIGEINEYRVGTTGAKVTADSSVNVIVQYCDKLPKDKYHTRRPLFE 670

Query: 611 YKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSV 670
           +    + + C+LTLPS+     +VGP  R+K  +KQLVCL+AC++LH +GAL+D L P V
Sbjct: 671 FTDHGDGFVCKLTLPSSDVLPPLVGPKVRSKQKAKQLVCLDACKQLHLLGALDDCLCPRV 730

Query: 671 EEPS 674
           EEPS
Sbjct: 731 EEPS 734



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 112/249 (44%), Gaps = 46/249 (18%)

Query: 223 EGQISELESTLDSQVFT-IEDKTEMEVFVPSAKESCRFYDQSKFCG------SDLKGKLE 275
           EG+ +EL+  LDS V    E K E    + +A+   R  ++S            L+ KLE
Sbjct: 423 EGEHAELQEALDSLVAAQAEAKKEHAEVLATAQ--ARIDEKSDLISHYLGEIQGLRVKLE 480

Query: 276 V----SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYE 331
           V    + S +DAS++ LQ       K+        R+ LS   AKILYCL+++GL+CA E
Sbjct: 481 VQTKATKSTYDASITMLQNKPNYQNKEGGKIATETRRHLSISSAKILYCLNDVGLLCATE 540

Query: 332 AVKICLEKVLKA---QEEC-------------EIYRQSSLQCKYFLEEVLHVIGSAL--- 372
           A KIC+E+  +    +E C             +I   S++  K FL +V H++   L   
Sbjct: 541 ATKICIERGQRKGWMEEVCNATNMQNDANGSLQIAEISAIHMK-FLGDVSHLLQKRLQQG 599

Query: 373 PLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIA---AKV 429
             AD +FL     Y+       +ST   +LL  F   G+  +        ++ A     V
Sbjct: 600 ATADALFLQ---PYA-------VSTDSEDLLPAFFPIGEINEYRVGTTGAKVTADSSVNV 649

Query: 430 VERFVKKVP 438
           + ++  K+P
Sbjct: 650 IVQYCDKLP 658


>gi|302794558|ref|XP_002979043.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
 gi|300153361|gb|EFJ20000.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
          Length = 1686

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1383 (35%), Positives = 721/1383 (52%), Gaps = 151/1383 (10%)

Query: 43   NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
              IPR YQ  VF+ A + N I  L TG GKTMIA+MLI+     +     K++ +FLAPT
Sbjct: 352  TMIPRGYQKDVFQRALKENIIVNLGTGTGKTMIAIMLIQSFEDRLSMPQEKRIAVFLAPT 411

Query: 103  VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
            V+LV QQ   I   T  +V +YYG KGVD W  + WQ E++ + VLVMTPQ+ L+AL  +
Sbjct: 412  VNLVIQQARAIESFTVLKVGDYYGDKGVDSWSVKQWQAEVDSHQVLVMTPQVFLNALGTS 471

Query: 163  FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAM 220
             L L+ V  +V+DECHHA  NHPY  IMK  YH S   +KPK+FGMTASPV++KGVSS+ 
Sbjct: 472  ALKLEFVEILVMDECHHAHKNHPYALIMKTHYHVSCLKSKPKIFGMTASPVIQKGVSSSY 531

Query: 221  DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280
            DC  +++ LES LD++V+T+EDK+E+E + P+  +   +YD+ K   S ++  LE+    
Sbjct: 532  DCNCKLTVLESILDAKVYTVEDKSEIEEYYPNPTQYKEYYDRPKQSFSSIQTDLEI---- 587

Query: 281  FDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV 340
                L     S+  C     ++   + K +      I +CL +LGL+ A  AV+I   + 
Sbjct: 588  ----LKDRLNSEAACNCSEYEQQNKINKSIDRLLLSINHCLVDLGLLPALLAVEILKSRN 643

Query: 341  -----LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
                 LK + +  +  +   + K  L+E      S++P   ++     +   + +  G +
Sbjct: 644  KSTFHLKWKPDVSLEEE---EVKTSLKERFLQNVSSIPRFSQVS-SRSYPTLEEMTSGTL 699

Query: 396  STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
            S K+  LL +       T + CI+FVER+I A  + + +  + FL+HL   Y+TG     
Sbjct: 700  SPKVLVLLDVLERLRGMTNMRCIVFVERVIVAMALAKLISGLSFLSHLRCDYMTG-VRDT 758

Query: 456  DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
            DA  P  Q+EVL SF GGK+NLL AT V EEG+ V  C  VIRFD+ +T+ S++QSRGRA
Sbjct: 759  DARNPTQQQEVLHSFAGGKLNLLIATSVAEEGLDVQACCAVIRFDVCQTLRSHVQSRGRA 818

Query: 516  RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVE 575
            R   S ++ +LE GN++Q N    +  SER V D  + R+      +A      + + VE
Sbjct: 819  RNLLSTYVWLLETGNVEQLNLFNQLCTSERVVEDQVIFRNYMDITREAPPEGDLEFFRVE 878

Query: 576  STGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVG 635
            S GA  ++  SV+ IH YC  L  D+YY  KP F +K   +++ C +  P NAP +++ G
Sbjct: 879  S-GACKSSQDSVSFIHEYCARL-GDRYYNAKPKFSFK---DSFVCTVEFPPNAPLRSVEG 933

Query: 636  PTSRNKNLSKQLVCLEACEKLHQVGAL-NDHLLPSVEEPSENNLISKKNESLPGAGTTKR 694
            P  R + L+K+  CL+AC KL+ +G +  D L P V++  E +   +KNES       KR
Sbjct: 934  PLRRTEQLAKKAACLQACRKLYDMGEVRRDTLCPDVDDFDEEDQPMRKNES------GKR 987

Query: 695  KELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIV-TEIYSGFVLLIESELDNDVGNF 752
            KE+  T       G W   + GV L  YK  F      +  YS F  L+   +D +V + 
Sbjct: 988  KEIFSTAKPLIFEGSWVFNESGVQLQFYKICFVVEPPESRTYSNFGFLVNCVIDAEVTDS 1047

Query: 753  ELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFL 812
            E+ L+  ++ V A V   G + LDA+Q+  AK +QEL  NG F +L   ++ SGS +   
Sbjct: 1048 EVTLFSRNRVVNARVHRVGPIQLDANQVKAAKAYQELLLNGAFNRL---ARCSGSPQ--- 1101

Query: 813  KRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNN 872
                  LW  S  +L+LP+       D +  I+W+ ++  A V   +          C +
Sbjct: 1102 ----EILWDKSQAFLVLPVH------DDNDSIDWTSVHATAWVYRTL----------C-S 1140

Query: 873  NGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSA 932
            N   SSP          H  D++  ANG V +  L+DMVV  +H GR++ +  ++ N +A
Sbjct: 1141 NFSPSSPMDGDGVGEKTHA-DMLCTANGYVHSSALQDMVVATVHNGRLFCVTGVLENFTA 1199

Query: 933  ES--PFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGK 990
             S  P  G       T+++Y+ +KY   L  P QPLL+ K +H  HNLL+   +  GS  
Sbjct: 1200 ASLLPKRGF------TYIDYYKDKYQRTLRLPEQPLLKAKPTHAFHNLLIRPKEQEGS-- 1251

Query: 991  GSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINC 1050
                    ++ +  V +PPEL + +++   +++SLY +PS + R  S + A QLR  +  
Sbjct: 1252 --------RQEESFVELPPELCLCLEIKSGLIRSLYFVPSFLHRFTSTVCAIQLRSPLWP 1303

Query: 1051 HSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSA 1110
                  IP++ ILEA+T+  C E FS E LELLGDS LKY V+  LFL Y KKHEGQLSA
Sbjct: 1304 -----WIPAAKILEAITSKKCHEEFSYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSA 1358

Query: 1111 RRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDG 1170
            RRS A CN+ L++L     +  YIRD  F+P  W  PG L+     C     + E   + 
Sbjct: 1359 RRSRATCNAALYQLAKSSGIAEYIRDEEFNPSNWTGPGMLTSDSSKCRHQQGSFEN--EE 1416

Query: 1171 KFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADL 1230
             +F+          C  GHR +  K +AD  EALIGAY    G  +A+ +MK L ID + 
Sbjct: 1417 NYFSS---------CASGHRGIRRKALADVVEALIGAYLATSGPPSAMELMKQLDIDIEF 1467

Query: 1231 EVSLVDDCITRASL--RSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE-FYCYQ 1287
            ++ L+     +ASL   S+      ++ +E K+ Y+F  + LL EAITHAS      CYQ
Sbjct: 1468 DIGLLASA-RQASLPAESFQHLQASLESLEHKLQYKFQNRSLLVEAITHASQPNCLLCYQ 1526

Query: 1288 N--------------------------------------------------LYKHLQHCS 1297
                                                               L++HLQH S
Sbjct: 1527 RLEFLGDGVLDFLVSRHLFETHPGLPPGTLTDLRSAAVNNKWFARLVVRHGLHQHLQHGS 1586

Query: 1298 TLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFK 1357
              L  +I ++V++  K          + APK LGDLLESI GA+ +DT  +L+ +WR+  
Sbjct: 1587 VELDCEIRKFVQNV-KEKPDASCFEDLSAPKVLGDLLESITGAIFVDTNFDLERLWRVVL 1645

Query: 1358 PIL 1360
            P +
Sbjct: 1646 PFV 1648


>gi|225453660|ref|XP_002268369.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Vitis vinifera]
          Length = 1971

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1758 (30%), Positives = 821/1758 (46%), Gaps = 311/1758 (17%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL V E AK+RNTIA LETGAGKT+IAV+LI+ +   ++    K L +FL P V LV
Sbjct: 313  RQYQLDVLEQAKKRNTIAFLETGAGKTLIAVLLIRSVFNDLQGQNKKLLAVFLVPKVPLV 372

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +QQ +VIR  T ++V  Y G  G D WD++ WQ+E     VLVMT QILL+ LR + + +
Sbjct: 373  YQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFETKHVLVMTAQILLNILRHSIIKM 432

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            + +  +++DECHHA   HPY+ +M EFYH +  + +P VFGMTASPV  KGVSS +DC  
Sbjct: 433  EAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAI 492

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVSWSKFD 282
            +I  LES LDS V TI+D+ E+E  VP   E    YD++    S  +   ++E++  +  
Sbjct: 493  KIRNLESKLDSIVCTIKDRKELEKHVPMPSEIVVEYDKAATLWSLHEQIKQMELAVEEAA 552

Query: 283  ASLSKLQGSQLNCYKDMDDKHKTLR------KQLSDYHAKIL-------YCLDELGLICA 329
             S S+    Q    +D   K +  +      +  SD  A ++       Y L ELG  CA
Sbjct: 553  QSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 612

Query: 330  YEAVK---ICLEKVLKAQEECEIYRQSS--------LQCKYF-------------LEEVL 365
            ++  +     L+   +A  + ++  Q S        LQC+                E  +
Sbjct: 613  FKVAQSFLTALQNDERANYQLDVKFQESYLNKVVSLLQCQLSEGAVSDKDKKVVDTETSV 672

Query: 366  HVIGSA--------LPLADKIFLDFGFDY--SKAVDLGYISTKLHELLQLFLSFGKSTQV 415
             V GSA        LP +  +      D     AV  G ++ K+  L+++ L + ++   
Sbjct: 673  SVDGSAIEEIEEGELPNSHVVSGGEHVDVIIGAAVADGKVTPKVQSLVKILLKYQQTEDF 732

Query: 416  LCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475
              IIFVER++AA V+ +   ++P L+ +  A L G   S +  T ++Q + +  FR G+V
Sbjct: 733  RAIIFVERVVAALVLPKVFAELPSLSFIKCASLIGHNNSQEMRTCQMQ-DTIAKFRDGRV 791

Query: 476  NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRN 535
             LL AT V EEG+ +  C+ VIRFDL KTV +YIQSRGRAR+  S +ILM+ERGNL    
Sbjct: 792  TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHGA 851

Query: 536  KLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS------YIVESTGASVTTDSSVNL 589
             L +   SE ++   A+ R  +   LK  + + +        Y VESTGA V+ +S+V L
Sbjct: 852  FLRNARNSEETLRKEAIER-TDLSHLKGTSRLISVDTTPGTVYQVESTGAIVSLNSAVGL 910

Query: 590  IHRYCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKNLS 644
            IH YC  LPSD+Y   +P F  +  E+      Y C+L LP NAPF+ + GP   +  L+
Sbjct: 911  IHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSMRLA 970

Query: 645  KQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIR 704
            +Q VCL AC+KLH++GA  D LLP      E   + + +E  P  GT + +E +      
Sbjct: 971  QQAVCLAACKKLHEMGAFTDMLLPDKGSGEEGEKVDQNDEGDPLPGTARHREFYPEGVAN 1030

Query: 705  ALSGRW------GEKCGVILHAYKF-----NFACS---IVTEIYSGFVLLIESELDNDVG 750
             L G W      G     ++H Y +     NF  S    +T++ S FV+L  +ELD +V 
Sbjct: 1031 VLQGEWILLGKDGCNSSRLVHLYMYAVKCVNFGSSKDPFLTQV-SDFVVLFGNELDAEVL 1089

Query: 751  NFELELYLVSKTV-KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSRE 809
            +  ++L++    V KA++   G + +   Q++  K F     + +   L V  + S    
Sbjct: 1090 SISMDLFIARTMVTKASLVFWGPIDITESQLASLKSFHVRLMSIV---LDVDVEPS---- 1142

Query: 810  FFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGI------NPCASVVEFIKEKS 863
                    + W P+  YL +P+ + +   D   +I+W  +      +  ++ ++  +   
Sbjct: 1143 -------TTPWDPAKAYLFVPV-VGDKSEDPIRQIDWDIVERIIRTDGWSNPLQRARPDV 1194

Query: 864  FLGAAQCNNNG------------GNSSPCRTSPCKTGCHG----------------KDVI 895
            +LG  +    G            G +   ++ P   G  G                ++ I
Sbjct: 1195 YLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPT-YGIRGAVAQYDVVRASGLVPNRETI 1253

Query: 896  HLANG-------------SVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD 942
             +  G                A++L   +V A H+G+ + +  +  + +AE+ F      
Sbjct: 1254 EMMKGEDLTKGKLMMAGTQTSAEDLVGRIVTAAHSGKRFYVDSVRYDMTAENSFPRKEGY 1313

Query: 943  ----DSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMN 997
                +  ++ +Y+ +KYG+ LI+  QPL+R +      NLL   F    G          
Sbjct: 1314 LGPLEYSSYADYYRQKYGVELIYKQQPLIRGRGVSYCKNLLSPRFEHSEGESD------E 1367

Query: 998  TKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHI 1057
            T     +V +PPEL     +P S+V+S   LPS+M+R+ES++LA QL++ I     N+ +
Sbjct: 1368 TLDKTYYVFLPPELCFVHPLPGSLVRSAQRLPSIMRRVESMLLAVQLKDVI-----NYPV 1422

Query: 1058 PSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1117
            P++ ILEALT   C E+F  ER ELLGD+ LK+ VS  LFL YP+KHEGQL+  R   V 
Sbjct: 1423 PAAKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVS 1482

Query: 1118 NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDT 1177
            N  L++    + LQ YI+   F P RW APG L   PV  E   DT E   +   F  + 
Sbjct: 1483 NMVLYQSALCKGLQSYIQADRFAPSRWAAPGVL---PVFDE---DTKET--ESSLFDHER 1534

Query: 1178 KVVVGKPCDMGH---------------------RWMGSKTIADCAEALIGAYYVGGGLIA 1216
                  P +  H                     R + SKT+AD  EALIG YYV GG  A
Sbjct: 1535 PFSETAPGNDRHGDGYDDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNA 1594

Query: 1217 ALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAIT 1276
            A ++MKW+GI  + +   +       ++   + R      +E  +  +F  + LL EAIT
Sbjct: 1595 ANHLMKWIGIQVEFDPEDIVCATGPCNVPESILRSVNFDTLEGALNIKFNNRGLLIEAIT 1654

Query: 1277 HAS--VQEFYCYQN---------------------------------------------- 1288
            HAS       CYQ                                               
Sbjct: 1655 HASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVA 1714

Query: 1289 ----LYKHLQHCSTLLLSQITEYVK----SFPKPGETTDSGPSMKAPKALGDLLESIVGA 1340
                L+ HL+H S+ L  QI ++VK       KPG  +      KAPK LGD++ESI GA
Sbjct: 1715 VKHKLHIHLRHGSSALEKQIRDFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGA 1774

Query: 1341 VLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVH 1400
            + +D+  +   VW++F+P+L P+VTP+ L + P+REL E C      ++   T  G +  
Sbjct: 1775 IFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKATRSGNLAT 1834

Query: 1401 AELRLQLKDVLLVGEGQERSRKAAKGKAASQ---LLKKLEVCEKRISKGASNTGKLGDDC 1457
             E+ +   D + +G  Q   +K A+  AA     +LK+ E  E +  +G    GK     
Sbjct: 1835 VEVFI---DGVQIGIAQNPQKKMAQKLAARNALVVLKERETAEAK--EGDDENGK----- 1884

Query: 1458 RQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQL 1517
                          K++ G++                                R +L  +
Sbjct: 1885 --------------KKKNGSQTFT-----------------------------RQTLNDI 1901

Query: 1518 CKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRAD 1577
            C    WPMP +              EG        +F  ++  +   + + EC G+P   
Sbjct: 1902 CLRRNWPMPVYRCVN----------EGGPAHAKRFTFAVRVNTNDKGWTD-ECIGEPMPS 1950

Query: 1578 KKSSFDSAALIMLHELER 1595
             K + DSAA+++L  L +
Sbjct: 1951 VKKAKDSAAVLLLELLNK 1968


>gi|356571277|ref|XP_003553805.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Glycine max]
          Length = 1942

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1587 (31%), Positives = 759/1587 (47%), Gaps = 252/1587 (15%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL V E AKR+NTIA LETGAGKT+IAV+LIK I +++     K L +FL P V LV
Sbjct: 287  RQYQLDVLEQAKRKNTIAFLETGAGKTLIAVLLIKSIQESLHKQNKKMLAVFLVPKVPLV 346

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +QQ +VIR  T ++V  Y G  G D WD++ WQ+E +   VLVMT QILL+ LR + + +
Sbjct: 347  YQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKM 406

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            + +  +++DECHHA   HPY+ +M EFYH +  +N+P VFGMTASPV  KGVSS +DC  
Sbjct: 407  EAINLLILDECHHAVKKHPYSLVMSEFYHTTPKENRPSVFGMTASPVNLKGVSSQVDCAI 466

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSK---FCGSDLKGKLEVSWSKF 281
            +I  LES LDS V TI+D+ E+E  VP   E    YD++    +    +K ++EV   + 
Sbjct: 467  KIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIK-QMEVEVEEA 525

Query: 282  DASLSKLQGSQLNCYKDMDDKHKTLR------KQLSDYHAKIL-------YCLDELGLIC 328
                S+    Q    +D   K +  +      +  SD  A ++       Y L ELG  C
Sbjct: 526  AKCSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWC 585

Query: 329  AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
            AY+  +  L   L+  E          Q  Y L +V+ ++   L        + G D S+
Sbjct: 586  AYKVAQSFL-AALQNDERANYQLDVKFQETY-LSKVVSLLKCQLSEGAVSDKNAGIDDSE 643

Query: 389  ------------------------------------AVDLGYISTKLHELLQLFLSFGKS 412
                                                AV  G ++ K+  L+++ L +  +
Sbjct: 644  NGAVQSGSEHEEMEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHT 703

Query: 413  TQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRG 472
                 IIFVER+++A V+ +   ++P L+ +  A L G   S +  T ++Q + +  FR 
Sbjct: 704  EDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQ-DTIAKFRD 762

Query: 473  GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK 532
            G+V LL AT V EEG+ +  C+ VIRFDL KTV +YIQSRGRAR+  S +ILM+ER NL 
Sbjct: 763  GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERDNLS 822

Query: 533  QRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS-----YIVESTGASVTTDSSV 587
                L +   SE ++   A+ R   +        +   +     Y V+STGA V+ +S+V
Sbjct: 823  HEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAV 882

Query: 588  NLIHRYCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKN 642
             LIH YC  LPSD+Y   +P F  +  E+      Y C+L LP NAPF+ + GP   +  
Sbjct: 883  GLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMR 942

Query: 643  LSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTP 702
            L++Q VCL AC+KLH++GA  D LLP      E     + +E  P  GT + +E +    
Sbjct: 943  LAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEKEKDEQTDEGDPLPGTARHREFYPEGV 1002

Query: 703  IRALSGRW----GEKCG--VILHAYKFNFACS--------IVTEIYSGFVLLIESELDND 748
               L G W     + C    +LH Y +   C          +T++ S F +L  +ELD +
Sbjct: 1003 ADILKGEWILSGKDACNNSKLLHLYMYAVKCENLGHSKDPFLTQV-SNFAVLFGNELDAE 1061

Query: 749  VGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGS 807
            V +  ++L++  + T K+++   G + +   Q++  K F     + +   L V  + S  
Sbjct: 1062 VLSMSMDLFIARTVTTKSSLVFRGLISITESQLASLKSFHVRLMSIV---LDVDVEPS-- 1116

Query: 808  REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWS------GINPCASVVEFIKE 861
                      + W P+  YL +P+ + +   D + +I+W       G +   + ++  + 
Sbjct: 1117 ---------TTPWDPAKAYLFVPM-VGDKSVDPTNQIDWHLVETIIGADAWKNPLQKARP 1166

Query: 862  KSFLGAAQCNNNG------------GNSSPCRTSPCKTGCHGK----DVIH--------- 896
              +LG  +    G            G +   ++ P   G  G     DV+          
Sbjct: 1167 DVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPT-YGIRGAVAQFDVVKASGLVPNRD 1225

Query: 897  -----------------LANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGN 939
                             +A+   +A++L   +V A H+G+ + +  I  + SAE+ F   
Sbjct: 1226 AMQTQKHINMTTNGKLMMADTCTNAEDLIGKIVTAAHSGKRFYVDSIRYDMSAENSFPRK 1285

Query: 940  TDD----DSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKS 994
                   +  ++ +Y+ +KYG+ LI+  QPL+R +      NLL   F    G  +    
Sbjct: 1286 EGYLGPLEYSSYADYYKQKYGVDLIYRQQPLIRGRGVSYCKNLLSPRFEHSEGESE---- 1341

Query: 995  GMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRN 1054
               T     +V +PPEL +   +P S+V+    LPS+M+R+ES++LA QL+  I     N
Sbjct: 1342 --ETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMI-----N 1394

Query: 1055 FHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSW 1114
            + + +S ILEALT   C E+F  ER ELLGD+ LK+ VS  LFL YP+KHEGQL+  R  
Sbjct: 1395 YPVQASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQ 1454

Query: 1115 AVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL----------------RPVP-- 1156
             V N  L++    + LQ YI+   F P RW APG L +                R +   
Sbjct: 1455 MVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQERSISKI 1514

Query: 1157 --CECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL 1214
               +C  D  E  ++      D+           +R + SKT+AD  EALIG YYV GG 
Sbjct: 1515 ERMDCHTDGYEDEMEDGELESDSS---------SYRVLSSKTLADVVEALIGVYYVEGGK 1565

Query: 1215 IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEA 1274
             AA ++MKW+GI  + +   +D      ++   + R  +   +E  +  +F  + LL E+
Sbjct: 1566 NAANHLMKWMGIQIEFDPDTMDCTRKPFNVPDSILRSVDFDALEGALNMKFKDRGLLVES 1625

Query: 1275 ITHAS--VQEFYCYQ--------------------------------------------- 1287
            ITHAS       CYQ                                             
Sbjct: 1626 ITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFAR 1685

Query: 1288 -----NLYKHLQHCSTLLLSQITEYVK----SFPKPGETTDSGPSMKAPKALGDLLESIV 1338
                 NL+ HL+H S+ L  QI E+VK       KPG  +      KAPK LGD+LESI 
Sbjct: 1686 VAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDILESIA 1745

Query: 1339 GAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEM 1398
            GA+ +D+  +   VW++F+P+L P+VTP+ L + P+REL E C      ++   +  G +
Sbjct: 1746 GAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRIGNL 1805

Query: 1399 VHAELRLQLKDVLLVGEGQERSRKAAK 1425
               E+ +   D + VG  Q   +K A+
Sbjct: 1806 ATVEVFI---DGVQVGAAQNPQKKMAQ 1829


>gi|356504203|ref|XP_003520888.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Glycine max]
          Length = 1944

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1599 (31%), Positives = 766/1599 (47%), Gaps = 254/1599 (15%)

Query: 38   STNSINFIP----RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK 93
            S ++I  +P    R YQL V E +KR+NTIA LETGAGKT+IAV+LIK I  +++    K
Sbjct: 276  SEDAIERVPEEKARQYQLDVLEQSKRKNTIAFLETGAGKTLIAVLLIKSIQDSLQKQNKK 335

Query: 94   KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
             L +FL P V LV+QQ +VIR  T ++V  Y G  G D WD++ WQ+E +   VLVMT Q
Sbjct: 336  MLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQ 395

Query: 154  ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPV 211
            ILL+ LR + + ++ +  +++DECHHA   HPY+ +M EFYH +  +N+P VFGMTASPV
Sbjct: 396  ILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKENRPSVFGMTASPV 455

Query: 212  VRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSK---FCGS 268
              KGVSS +DC  +I  LES LDS V TI+D+ E+E  VP   E    YD++    +   
Sbjct: 456  NLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHE 515

Query: 269  DLKGKLEVS---WSKFDASLSKLQ---GSQLNCYKDMDDKHKTLRKQLSDYHAKIL---- 318
             +K ++EV     +K+ +  SK Q          +++   +    +  SD  A ++    
Sbjct: 516  QIK-QMEVEVEEAAKYSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLR 574

Query: 319  ---YCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLA 375
               Y L ELG  CAY+ V +     L+  E          Q  Y L +V+ ++   L   
Sbjct: 575  AVNYALGELGQWCAYK-VALSFLAALQNDERANYQLDVKFQETY-LSKVVSLLKCQLSEG 632

Query: 376  DKIFLDFGFDYSK------------------------------------AVDLGYISTKL 399
                 + G D S+                                    AV  G ++ K+
Sbjct: 633  AASDKNAGIDDSENGAAQSGSEHEEMEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKV 692

Query: 400  HELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALT 459
              L+++ L +  +     IIFVER+++A V+ +   ++P L+ +  A L G   S +  T
Sbjct: 693  QALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRT 752

Query: 460  PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
             ++Q + +  FR G+V LL AT V EEG+ +  C+ VIRFDL KTV +YIQSRGRAR+  
Sbjct: 753  YQMQ-DTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 811

Query: 520  SQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS-----YIV 574
            S +ILM+ER NL     L +   SE ++   A+ R   +        +   +     Y V
Sbjct: 812  SDYILMVERDNLSHEAFLRNAKNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQV 871

Query: 575  ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAP 629
            +STGA V+ +S+V LIH YC  LPSD+Y   +P F  +  E+      Y C+L LP NAP
Sbjct: 872  KSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAP 931

Query: 630  FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGA 689
            F+ + GP   +  L++Q VCL AC+KLH++GA  D LLP      E     + +E  P  
Sbjct: 932  FENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKDEQTDEGDPLP 991

Query: 690  GTTKRKELHGTTPIRALSGRW----GEKCG--VILHAYKFNFACS--------IVTEIYS 735
            GT + +E +       L G W     + C    +LH Y +   C          +T++ S
Sbjct: 992  GTARHREFYPEGVADILKGEWILSEKDACNNYKLLHLYMYAVKCENLGHSKDPFLTQV-S 1050

Query: 736  GFVLLIESELDNDVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGL 794
             F +L  +ELD +V +  ++L++  + T KA++  SG +++   Q++  K F     + +
Sbjct: 1051 NFAVLFGNELDAEVLSMSMDLFIARTVTTKASLVFSGLINITESQLASLKSFHVRLMSIV 1110

Query: 795  FGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWS------G 848
               L V  + S            + W P+  YL +P+ + +   D   +I+W       G
Sbjct: 1111 ---LDVDVEPS-----------TTPWDPAKAYLFVPM-VGDKSVDPMNQIDWHLVETIIG 1155

Query: 849  INPCASVVEFIKEKSFLGAAQCNNNG------------GNSSPCRTSPCKTGCHGK---- 892
             +   + ++  +   +LG  +    G            G +   ++ P   G  G     
Sbjct: 1156 ADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPT-YGIRGAVAQF 1214

Query: 893  DVIH--------------------------LANGSVDAKNLKDMVVLAIHTGRIYSIVEI 926
            DV+                           +A+   +A++L   +V A H+G+ + +  I
Sbjct: 1215 DVVKASGLVPNRDAMQTQKHINMTTNGKLMMADICTNAEDLVGRIVTAAHSGKRFYVDSI 1274

Query: 927  VNNSSAESPFDGNTDD----DSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV-N 981
              + SAE+ F          +  ++ +Y+ +KYG+ LI+  QPL+R +      NLL   
Sbjct: 1275 CYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVNLIYKQQPLIRGRGVSYCKNLLSPR 1334

Query: 982  FNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLA 1041
            F    G  +             +V +PPEL +   +P S+V+    LPS+M+R+ES++LA
Sbjct: 1335 FEHSEGESE------EIHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLA 1388

Query: 1042 SQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYP 1101
             QL+  I     N+ + +S IL ALT   C E+F  ER ELLGD+ LK+ VS  LFL YP
Sbjct: 1389 VQLKNMI-----NYPVLASKILGALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYP 1443

Query: 1102 KKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGV 1161
            +KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG L   PV  E   
Sbjct: 1444 QKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVL---PVFDEDTK 1500

Query: 1162 DTLEVPLDGKFFTQDTKVVVGKPCD-------------------MGHRWMGSKTIADCAE 1202
            D      +   F Q+  +   +  D                     +R + SKT+AD  E
Sbjct: 1501 DG-----ESSLFDQERSISKIERMDCHTNGYEDEMEDGELESDSSSYRVLSSKTLADVVE 1555

Query: 1203 ALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIG 1262
            ALIG YYV GG  AA ++MKW+GI  + +   ++      ++   + R  +   +E  + 
Sbjct: 1556 ALIGVYYVEGGKNAANHLMKWIGIQIEFDPDTMECTKKPFNVPDSILRSVDFDALEGALN 1615

Query: 1263 YEFTVKFLLQEAITHAS--VQEFYCYQ--------------------------------- 1287
             +F  + LL E+ITHAS       CYQ                                 
Sbjct: 1616 MKFNDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDL 1675

Query: 1288 -----------------NLYKHLQHCSTLLLSQITEYVK----SFPKPGETTDSGPSMKA 1326
                             NL+ HL+H S+ L  QI E+VK       KPG  +      KA
Sbjct: 1676 RAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQVELSKPGFNSFGLGDCKA 1735

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGY 1386
            PK LGD++ESI GA+ +D+  +   VW++F+P+L P+VTP+ L + P+REL E C     
Sbjct: 1736 PKVLGDIVESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAE 1795

Query: 1387 FVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAK 1425
             ++   +  G +   E+ +   D + VG  Q   +K A+
Sbjct: 1796 GLEYKASRIGNLATVEVFI---DGVQVGAAQNPQKKMAQ 1831


>gi|218184775|gb|EEC67202.1| hypothetical protein OsI_34085 [Oryza sativa Indica Group]
          Length = 1093

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/975 (42%), Positives = 546/975 (56%), Gaps = 202/975 (20%)

Query: 679  ISKKNESLPGAGTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGF 737
            +S   E LP  GTTKRKELHGTT + ALSG W  +   + L+ Y+ +F C    E Y+GF
Sbjct: 253  LSLIEEILP-QGTTKRKELHGTTCVLALSGTWIHDSENITLNTYRIDFLCDQEGENYAGF 311

Query: 738  VLLIESELDNDVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFG 796
            VLL+E ELD+DV   +++L+L+ +K V  TV+  G+V L+  Q+ K K FQE FFNG+FG
Sbjct: 312  VLLMEPELDDDVAPSKMDLFLIPNKMVYTTVTPRGKVQLNKKQLGKGKLFQEFFFNGIFG 371

Query: 797  KLFVKSKSSGS-REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASV 855
            +LF  S+ SG+ R+F  K+     W+   MYLLLPL   +   D    I+W  I  CA  
Sbjct: 372  RLFHGSRKSGAQRDFIFKKGHEIQWNTESMYLLLPLRDSSYIQD-DLSIHWEAIESCAGA 430

Query: 856  VEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAI 915
            VE +   S+ G         N  P    P K     +++IHLAN S+   ++KD VVL++
Sbjct: 431  VEQLW-SSYQGDE-------NVIPVNCIPQKRSGGQEEIIHLANKSLHCSSIKDSVVLSL 482

Query: 916  HTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNP 975
            HTGRIY++++++ +++AE  FD               E YG      G+PLL        
Sbjct: 483  HTGRIYTVLDLILDTTAEDSFD---------------EMYG----STGKPLL-------- 515

Query: 976  HNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRL 1035
                                   +K Q+H  +PPELL+ +D                   
Sbjct: 516  ----------------------MEKEQIHARVPPELLIHLD------------------- 534

Query: 1036 ESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCH 1095
                                      ILEA+TTL CCE+FS+ERLELLGDSVLKY V C 
Sbjct: 535  --------------------------ILEAITTLRCCETFSLERLELLGDSVLKYVVGCD 568

Query: 1096 LFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPV 1155
            LFL YP KHEGQLS  RS AVCN+TLHK G  R LQGY+RD+AFDPRRWVAPGQ+SLRP 
Sbjct: 569  LFLRYPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPF 628

Query: 1156 PCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLI 1215
            PC CG++T  VP   ++   D   VVGKPCD GHRWM SKTI+DC EAL+GAYYVGGG+ 
Sbjct: 629  PCNCGIETAFVPSHRRYIRDDPSFVVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIA 688

Query: 1216 AALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAI 1275
            AAL++M+W GID   ++ L+ +    AS    + +IN+I+++E+K+ Y F+VK LL EAI
Sbjct: 689  AALWVMRWFGIDIKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAI 748

Query: 1276 THASVQEF---YCYQ--------------------------------------------- 1287
            TH S+QE    YCYQ                                             
Sbjct: 749  THPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQ 808

Query: 1288 -----NLYKHLQHCSTLLLSQITEYVKS-FPKPGETTD--SGPSMKAPKALGDLLESIVG 1339
                 N++ HLQH S +LL QITEYV+S     G+ ++     + K PK LGD++ESI G
Sbjct: 809  AVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAG 868

Query: 1340 AVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMV 1399
            AV +DT  N+D VW IF+P+LSP++TPDKL LPP REL+ELC  +G F+   CT KGE++
Sbjct: 869  AVFLDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEVI 928

Query: 1400 HAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQ 1459
              E+ LQL+D LLV +G +R++K AK KAAS++L  L+          S T        Q
Sbjct: 929  -IEMSLQLRDELLVAQGHDRNKKRAKAKAASRILADLK----------SGT--------Q 969

Query: 1460 TTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCK 1519
             +  DL            +  I  G S       +V   VV P+ M+KGGPR++LF+LCK
Sbjct: 970  LSYSDL-----------NDYHILEGLS-------SVKKEVVLPLKMEKGGPRSALFKLCK 1011

Query: 1520 TMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKK 1579
             + WPMP FE  E + RT +V  +G    T F+SFVS ITLHIP+   +   G+ R DKK
Sbjct: 1012 ILQWPMPEFEFVEQRFRTPIVM-DG-ATTTNFNSFVSTITLHIPDATTITFQGERRTDKK 1069

Query: 1580 SSFDSAALIMLHELE 1594
            S+ DSA+L+MLH+L+
Sbjct: 1070 SAQDSASLMMLHKLQ 1084



 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/232 (40%), Positives = 137/232 (59%), Gaps = 46/232 (19%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN-GFKKLIIFLAPTVH 104
           PR YQ++VFE A R NTIAVL+TG+GKTM+AVML ++ A+ +++    +++++FLAPTVH
Sbjct: 27  PRGYQVEVFEAALRGNTIAVLDTGSGKTMVAVMLAREHARRVRAGEAPRRIVVFLAPTVH 86

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           LVHQQ++VIR +TD +V    GA  V EW +  W++E+ +N+++VMTPQILLDALR AFL
Sbjct: 87  LVHQQFEVIREYTDLDVMMCSGASRVGEWGADHWKEEVGRNEIVVMTPQILLDALRHAFL 146

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEG 224
           ++  V  ++ DECH A G+HPY +IMK                                 
Sbjct: 147 TMSAVSLLIFDECHRACGSHPYARIMK--------------------------------- 173

Query: 225 QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276
                       ++ +ED+ E+E F P A    ++YD       +LK KL++
Sbjct: 174 ------------IYIVEDRNELESFSPPATIVNKYYDAYMVDFDNLKSKLQI 213


>gi|302765743|ref|XP_002966292.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
 gi|300165712|gb|EFJ32319.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
          Length = 1730

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1558 (32%), Positives = 759/1558 (48%), Gaps = 225/1558 (14%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL+V   A+  NTIA LETGAGKT+IAV+L+K  A+ ++    K L +FL P V LV
Sbjct: 97   RAYQLEVLSQAEEGNTIAFLETGAGKTLIAVLLMKRKAELLQR---KILTVFLVPKVPLV 153

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +QQ +VIR  T+F V  Y G    D WDS+ WQ+E    +VLVMT QILL+ LR + + +
Sbjct: 154  YQQAEVIRERTNFNVGHYCGEMVQDFWDSKRWQREFQSKEVLVMTAQILLNILRHSIVRM 213

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            + +  +++DECHHA   HPY+ +M EFYH +  + +PK+FGMTASPV  KGVS+  DC  
Sbjct: 214  EDIDLLILDECHHAVKKHPYSLVMSEFYHLAPKEKRPKIFGMTASPVNLKGVSNQEDCAV 273

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD-- 282
            +I  LE+ LDS V TI D+ E+E  VP   E+   YD++    S L+ K++    + +  
Sbjct: 274  KIRNLETKLDSVVCTIRDRKELEKHVPMPSETVVEYDKAAVLWS-LREKIKQMKEQVEEA 332

Query: 283  -ASLSKLQGSQLNCYKDM---DDKH---KTLRKQLSDYHAK-------ILYCLDELGLIC 328
             ++ SK    Q    +D    D+ H       ++ SD  A        I++CLDELG  C
Sbjct: 333  CSASSKRTKWQFMGARDAGASDELHFVYGVAERKESDGAANLLQKLRSIIFCLDELGQWC 392

Query: 329  AYEAVKICLEKV--------LKAQE----------ECEIYRQSSLQCKYFLEEVLHVIGS 370
            AY+     L  +        +K QE          +C++ + ++   K    E +H    
Sbjct: 393  AYKVASSSLGNLRHDERTADVKYQELYLTKIVDMLKCDLQQGAASSSKL---EAVHGDVE 449

Query: 371  ALPLADKIFLDFG--FD--YSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIA 426
               + D   L  G  FD     AV    ++ K+  L+Q+   +        IIFV+R++A
Sbjct: 450  EGEVIDTNSLSGGEHFDEVLGAAVADKKVTPKVQSLIQILRKYEHVDDFRAIIFVDRVVA 509

Query: 427  AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEE 486
            A  +   + ++P L ++    L G   S D  T  +  + L  FR G +N+L AT V EE
Sbjct: 510  ALTLPCVLSELPSLKYVRSGSLVGHNNSQDVSTRHMH-DSLSKFRDGSLNVLVATSVAEE 568

Query: 487  GMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS 546
            G+ +  C+ V+RFDL KTV +YIQSRGRAR+  S +ILMLE+GN   ++ L +   SE +
Sbjct: 569  GLDIRQCNVVVRFDLAKTVLAYIQSRGRARKPGSDYILMLEKGNKVHQSFLRNARNSEET 628

Query: 547  VTDTALSR---DP--EACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
            +   A  R   DP  EA  + +    K ++Y V STGA VT +S+V LIH YC  LPSD+
Sbjct: 629  LRKEATERTKLDPWTEAAIVASLEDGKGETYQVPSTGAMVTLNSAVGLIHFYCSQLPSDR 688

Query: 602  YYTPKPIF---KYKSAEEAY-ECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLH 657
            Y   KP F   K+ + +  Y  C+L LPSNAP ++  GP       ++Q VCLEAC+KLH
Sbjct: 689  YSILKPEFVLTKHSTGDVVYFSCKLRLPSNAPVESFDGPVCSTMKGAQQAVCLEACKKLH 748

Query: 658  QVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCG-- 715
            ++ A  D LLP      +++       + P  GT + +E         L G W       
Sbjct: 749  EMAAFTDMLLPDTGTSDKSDKGEDNETTDPIPGTARYREYFPEGIADFLKGDWILNTNYL 808

Query: 716  -------VILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV-SKTVKATV 767
                    I+H     F+   +    S F +L   E+D +V    ++L++  + T +A++
Sbjct: 809  LSTSLYMYIIHYSNIGFSTDPLVTQTSDFAVLFGREMDPEVLTASVDLFVARTLTTQASL 868

Query: 768  SSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYL 827
              SG  H+ + +++  K F     + +   + V+  S+              W  +  YL
Sbjct: 869  VFSGVHHITSSELTLLKAFHVRLMSIVL-DVDVEPASTP-------------WDSNKAYL 914

Query: 828  LLPLEIVNTFGDGSWRINWS------GINPCASVVEFIKEKSFLGA-------------- 867
             +PL    T      +I+W+      G +  +S ++  +   FLG               
Sbjct: 915  FVPLTSSCTK-----QIDWALMNEVLGSHAWSSPLQRARPDVFLGTNERALGGDRREYGF 969

Query: 868  AQCNNNGGNSSPCRTSPCKTGCHGKDVIH-------------------LANGSVDAKNLK 908
            ++  +NG    P  T   +      DVI                    LA+G  +   + 
Sbjct: 970  SKLRSNGVQKHP--TYGIRGAVAEFDVIKASGIAPLREKLEPEGRQLLLADGYANMDEMD 1027

Query: 909  DMVVLAIHTGRIYSIVEIVNNSSAESPF---DGNTDD-DSKTFVNYFSEKYGIVLIHPGQ 964
              +V A H+G+ + +  ++   +AESPF   +G     +  ++ +Y+ +KYG+ L    Q
Sbjct: 1028 GKLVTAAHSGKRFYVESVMREMTAESPFPRKEGYLGSVEYSSYADYYEQKYGVRLHCRHQ 1087

Query: 965  PLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKS 1024
            P+LR +   +  NLL          K  +S         +V +PPE+ +   +P  +V+ 
Sbjct: 1088 PMLRCRGVSHCKNLL------SPRFKLLESSEELSDKTYYVMLPPEICLVHPLPGCLVRG 1141

Query: 1025 LYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLG 1084
               LPSVM+R+ES++LA QL+ EI      F IP++ +LEALT   C E+FS ER ELLG
Sbjct: 1142 AQRLPSVMKRVESILLAVQLKHEI-----GFPIPAAKVLEALTAASCQETFSYERAELLG 1196

Query: 1085 DSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRW 1144
            D+ LK+ VS  LF+ +P+KHEGQL+  R   V N  L++    + LQ YI+   F P RW
Sbjct: 1197 DAYLKWVVSRRLFIKHPRKHEGQLTRMRQQTVSNMVLYEFAISKSLQSYIQSDRFAPSRW 1256

Query: 1145 VAPGQLSLRPVPCECGVDT------LEVPLDGKFFTQDTKV-----VVGKPCDM------ 1187
             APG   + PV  E   D+       EVP   +   + TK      V+     +      
Sbjct: 1257 AAPG---VPPVFDEDLKDSNLDNEAAEVPKASEHEERSTKSSGEEEVLDDSTSLEDGEAE 1313

Query: 1188 ----GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRAS 1243
                 +R + SKT+AD  EALIG YYV GG  AA + M W+ I  D + +  +      S
Sbjct: 1314 WDSSSYRVLSSKTLADVVEALIGVYYVEGGTKAAAHFMNWISIPIDYDEAEANAARAGCS 1373

Query: 1244 LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--------------------- 1282
            +   V    + + +E  IGY+F +K +L EAI+HAS                        
Sbjct: 1374 VPDSVMNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHLI 1433

Query: 1283 ----FYCYQNL---------------------------YKHLQHCSTLLLSQITEYVKS- 1310
                F+ YQ+L                           + HL+H S+ L +QI ++VK  
Sbjct: 1434 TRYLFFRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKDI 1493

Query: 1311 ---FPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPD 1367
                 KPG  +      KAPK LGD+LESI GA+ +DT L  DEVW++F+ +L P+VTPD
Sbjct: 1494 QSELDKPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTPD 1553

Query: 1368 KLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAK 1425
             L + P+REL E C      ++   + +G +   E+     D + +G  Q   +K A+
Sbjct: 1554 TLPVHPVRELQERCQQQAEGLEYRASREGSIATVEV---FVDGVQIGCAQNTQKKMAQ 1608


>gi|302793023|ref|XP_002978277.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
 gi|300154298|gb|EFJ20934.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
          Length = 1728

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1558 (32%), Positives = 759/1558 (48%), Gaps = 225/1558 (14%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL+V   A+  NTIA LETGAGKT+IAV+L+K  A+ ++    K L +FL P V LV
Sbjct: 97   RAYQLEVLSQAEEGNTIAFLETGAGKTLIAVLLMKRKAELLQR---KILTVFLVPKVPLV 153

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +QQ +VIR  T+F V  Y G    D WDS+ WQ+E    +VLVMT QILL+ LR + + +
Sbjct: 154  YQQAEVIRERTNFNVGHYCGEMVQDFWDSKRWQREFQSKEVLVMTAQILLNILRHSIVRM 213

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            + +  +++DECHHA   HPY+ +M EFYH +  + +PK+FGMTASPV  KGVS+  DC  
Sbjct: 214  EDIDLLILDECHHAVKKHPYSLVMSEFYHLAPKEKRPKIFGMTASPVNLKGVSNQEDCAV 273

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD-- 282
            +I  LE+ LDS V TI D+ E+E  VP   E+   YD++    S L+ K++    + +  
Sbjct: 274  KIRNLETKLDSVVCTIRDRKELEKHVPMPSETVVEYDKAAVLWS-LREKIKQMKEQVEEA 332

Query: 283  -ASLSKLQGSQLNCYKDM---DDKH---KTLRKQLSDYHAK-------ILYCLDELGLIC 328
             ++ SK    Q    +D    D+ H       ++ SD  A        I++CLDELG  C
Sbjct: 333  CSASSKRTKWQFMGARDAGASDELHFVYGVAERKESDGAANLLQKLRSIIFCLDELGQWC 392

Query: 329  AYEAVKICLEKV--------LKAQE----------ECEIYRQSSLQCKYFLEEVLHVIGS 370
            AY+     L  +        +K QE          +C++ + ++   K    E +H    
Sbjct: 393  AYKVASSSLGNLRHDERTADVKYQELYLTKIVDMLKCDLQQGAASSSKL---EAVHGDVE 449

Query: 371  ALPLADKIFLDFG--FD--YSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIA 426
               + D   L  G  FD     AV    ++ K+  L+Q+   +        IIFV+R++A
Sbjct: 450  EGEVIDTNSLSGGEHFDEVLGAAVADKKVTPKVQSLIQILRKYEHVEDFRAIIFVDRVVA 509

Query: 427  AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEE 486
            A  +   + ++P L ++    L G   S D  T  +  + L  FR G +N+L AT V EE
Sbjct: 510  ALTLPCVLSELPSLKYVRSGSLVGHNNSQDVSTRHMH-DSLSKFRDGSLNVLVATSVAEE 568

Query: 487  GMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS 546
            G+ +  C+ V+RFDL KTV +YIQSRGRAR+  S +ILMLE+GN   ++ L +   SE +
Sbjct: 569  GLDIRQCNVVVRFDLAKTVLAYIQSRGRARKPGSDYILMLEKGNKVHQSFLRNARNSEET 628

Query: 547  VTDTALSR---DP--EACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
            +   A  R   DP  EA  + +    K ++Y V STGA VT +S+V LIH YC  LPSD+
Sbjct: 629  LRKEATERTKLDPWTEAAIVASLEDGKGETYQVPSTGAMVTLNSAVGLIHFYCSQLPSDR 688

Query: 602  YYTPKPIF---KYKSAEEAY-ECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLH 657
            Y   KP F   K+ + +  Y  C+L LPSNAP ++  GP       ++Q VCLEAC+KLH
Sbjct: 689  YSILKPEFVLTKHSTGDVVYFSCKLRLPSNAPVESFDGPVCSTMKGAQQAVCLEACKKLH 748

Query: 658  QVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVI 717
            ++ A  D LLP    P +++       + P  GT + +E         L G W      +
Sbjct: 749  EMAAFTDMLLPDTGTPDKSDKGEDNETTDPIPGTARYREYFPEGIADFLKGDWILNTNYL 808

Query: 718  LHAYKF---------NFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV-SKTVKATV 767
            L    +          F+   +    S F +L   E+D +V    ++L++  + T +A++
Sbjct: 809  LSTSLYMYIIQYSNVGFSTDPLVTQTSDFAVLFGREMDPEVLTASVDLFVARTLTTQASL 868

Query: 768  SSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYL 827
              SG  H+ + +++  K F     + +   + V+  S+              W  +  YL
Sbjct: 869  VFSGVHHITSSELTLLKAFHVRLMSIVL-DVDVEPASTP-------------WDSNKAYL 914

Query: 828  LLPLEIVNTFGDGSWRINWS------GINPCASVVEFIKEKSFLGA-------------- 867
             +PL    T      +I+W+      G +  +S ++  +   FLG               
Sbjct: 915  FVPLTSSCTK-----QIDWALMNKVLGSHAWSSPLQRARPDVFLGTNERALGGDRREYGF 969

Query: 868  AQCNNNGGNSSPCRTSPCKTGCHGKDVIH-------------------LANGSVDAKNLK 908
            ++  +NG    P  T   +      DVI                    LA+G  +   + 
Sbjct: 970  SKLRSNGVQKHP--TYGIRGAVAEFDVIKASGIAPLREKLEPEGRQLLLADGYANMDEMD 1027

Query: 909  DMVVLAIHTGRIYSIVEIVNNSSAESPF---DGNTDD-DSKTFVNYFSEKYGIVLIHPGQ 964
              +V A H+G+ + +  ++   +AESPF   +G     +  ++ +Y+ +KYG+ L    Q
Sbjct: 1028 GKLVTAAHSGKRFYVESVMREMTAESPFPRKEGYLGSVEYSSYADYYEQKYGVRLHCRHQ 1087

Query: 965  PLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKS 1024
            P+LR +   +  NLL          K  +S         +V +PPE+ +   +P  +V+ 
Sbjct: 1088 PMLRCRGVSHCKNLL------SPRFKLLESSEELSDKTYYVMLPPEICLVHPLPGCLVRG 1141

Query: 1025 LYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLG 1084
               LPSVM+R+ES++LA QL+ EI      F IP++ +LEALT   C E+FS ER ELLG
Sbjct: 1142 AQRLPSVMKRVESILLAVQLKHEI-----GFPIPAAKVLEALTAASCQETFSYERAELLG 1196

Query: 1085 DSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRW 1144
            D+ LK+ VS  LF+ +P+KHEGQL+  R   V N  L++    + LQ YI+   F P RW
Sbjct: 1197 DAYLKWVVSRRLFIKHPRKHEGQLTRMRQQTVSNMVLYEFAISKSLQSYIQSDRFAPSRW 1256

Query: 1145 VAPGQLSLRPVPCECGVD------TLEVPLDGKFFTQDTKV-----VVGKPCDM------ 1187
             APG   + PV  E   D        EVP   +   + TK      V+     +      
Sbjct: 1257 AAPG---VPPVFDEDLKDANLDNEAAEVPKANEHEERSTKSSGEEEVLDDSTSLEDGEAE 1313

Query: 1188 ----GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRAS 1243
                 +R + SKT+AD  EALIG YYV GG  AA + M W+ I  D + +  +      S
Sbjct: 1314 WDSSSYRVLSSKTLADVVEALIGVYYVEGGTKAAAHFMNWINIPIDYDEAEANAARAGCS 1373

Query: 1244 LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--------------------- 1282
            +   V    + + +E  IGY+F +K +L EAI+HAS                        
Sbjct: 1374 VPDSVMNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHLI 1433

Query: 1283 ----FYCYQNL---------------------------YKHLQHCSTLLLSQITEYVKS- 1310
                F+ YQ+L                           + HL+H S+ L +QI ++VK  
Sbjct: 1434 TRYLFFRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKDI 1493

Query: 1311 ---FPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPD 1367
                 KPG  +      KAPK LGD+LESI GA+ +DT L  DEVW++F+ +L P+VTPD
Sbjct: 1494 QSELDKPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTPD 1553

Query: 1368 KLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAK 1425
             L + P+REL E C      ++   + +G +   E+     D + +G  Q   +K A+
Sbjct: 1554 TLPVHPVRELQERCQQQAEGLEYRASREGSIATVEV---FVDGVQIGCAQNTQKKMAQ 1608


>gi|379987676|gb|AFD22618.1| dicer-like 1 protein, partial [Nicotiana attenuata]
          Length = 1690

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/1748 (29%), Positives = 801/1748 (45%), Gaps = 308/1748 (17%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL V E A+++ TIA LETGAGKT+IA++L+K +   +     K L +FL P V LV
Sbjct: 31   RKYQLDVLEHARKKXTIAFLETGAGKTLIAILLMKSLCNDLHKQNKKMLAVFLVPKVPLV 90

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWD-SQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            +QQ +VIR  T ++V  Y G  G   +  ++ WQ+E     VLVMT QILL+ LR + + 
Sbjct: 91   YQQAEVIREQTGYQVGHYCGEMGPRIFGIARRWQREFETKQVLVMTAQILLNILRHSIIK 150

Query: 166  LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN-KPKVF-GMTASPVVRKGVSSAMDCE 223
            ++ +  +++DECHHA   HPY+ +M EFYH +   K  +F  MTASPV  KGVSS +DC 
Sbjct: 151  MEAINLLIMDECHHAVKKHPYSLVMSEFYHTTQKAKGHLFLAMTASPVNLKGVSSQVDCA 210

Query: 224  GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVSWSKF 281
             +I  LE+ LDS VFTI+D+ ++E  VP   E    YD++    S  +   ++E +  + 
Sbjct: 211  IKIRNLETKLDSVVFTIKDRKDLEKHVPMPSEVVVEYDKAASLWSLHEQIKQMESAVEEA 270

Query: 282  DASLSKLQGSQLNCYKDMDDKHKTLR------KQLSDYHAKIL-------YCLDELGLIC 328
              S S+    Q    +D   + +  +      +  SD  A ++       Y L ELG  C
Sbjct: 271  AQSSSRRSKWQFMGARDAGAREELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWC 330

Query: 329  AYEAVK---ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL---PLADKIFLDF 382
            AY+  +     L+   +A  + ++  Q S     +L++V+ ++   L    +A+   +D 
Sbjct: 331  AYKVARSFLTALQNDERASYQLDVKFQES-----YLDKVVSLLQCQLSEGAVAENGKMDE 385

Query: 383  GFD-------------------------------YSKAVDLGYISTKLHELLQLFLSFGK 411
            G +                                  AV  G ++ K+  L+++ L +  
Sbjct: 386  GNNPNNDCDRPDEMEEGELLESHVVSSGEHVDATLGAAVADGKVTPKVQSLIKILLKYQH 445

Query: 412  STQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFR 471
            +     IIFVER++ A V+ +  +++P L+ +T + L G   S +  T ++Q + +  FR
Sbjct: 446  TEDFRAIIFVERVVTALVLPKVFEELPSLSFITSSSLIGHNNSQEMRTGQMQ-DTIAKFR 504

Query: 472  GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNL 531
             G++NLL AT V EEG+ +  C+ VIRFDL KT+ +YIQSRGRAR+  S +ILM+ER NL
Sbjct: 505  DGRMNLLVATSVAEEGLDIRQCNVVIRFDLAKTILAYIQSRGRARKPGSDYILMVERDNL 564

Query: 532  KQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS-----YIVESTGASVTTDSS 586
                 L +   SE ++   A+ R   +    A   +  ++     Y VESTGA V+ +S+
Sbjct: 565  SHEAFLRNARNSEETLRKEAIERTDISHLKGASKLISGEAPTDSVYQVESTGAVVSLNSA 624

Query: 587  VNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-----YECELTLPSNAPFQTIVGPTSRNK 641
            V LIH YC  LPSD+Y   +P F  +  E+      Y C L LP NAPF+ + GP   + 
Sbjct: 625  VGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCRLQLPCNAPFEKLEGPVCSSM 684

Query: 642  NLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTT 701
             L++Q VCL+AC+KLHQ+GA  D LLP     +E   + + +E  P  GT++ +E +   
Sbjct: 685  RLAQQAVCLDACKKLHQMGAFTDMLLPDKGSGAELEKVEQDDEGDPIPGTSRHREFYPEG 744

Query: 702  PIRALSGRW----GEKC--GVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDN 747
                L G W     + C    ++H Y +   C          +T++ S F +L  +ELD 
Sbjct: 745  VADILKGEWILSGKDSCDSSKLVHLYMYAIKCVNIGTSKDPFLTDV-SEFAILFGNELDA 803

Query: 748  DVGNFELELYLVSKTV--KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSS 805
            +V +  ++L+ +++TV  KAT+   G + +   +++  K F     + +   L V  + S
Sbjct: 804  EVLSMSMDLF-IARTVETKATLVFRGPIEVTESKLASLKSFHVRMMSIV---LDVDVEPS 859

Query: 806  GSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASV------VEFI 859
                        + W P+  YL  P+   +  GD    INW  I            ++  
Sbjct: 860  -----------TTPWDPAKAYLFAPV-TGDESGDPIKDINWDLIKKITKTDVWSNPLQKA 907

Query: 860  KEKSFLGAAQCNNNG------------GNSSPCRTSPCKTGCHG---------------- 891
            +   +LG ++    G            G +   ++ P   G  G                
Sbjct: 908  RPDVYLGTSERALGGDRREYGFAKLRHGMAFGLKSHPT-YGVRGAIANFDVVKASGLVPH 966

Query: 892  ------------KDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGN 939
                        KD I +A+  + A+++   +V A H+G+ + +  I N+ +AE+ F   
Sbjct: 967  RSSLDLVEVDLSKDKIMMADCCLRAEDIVGRIVTAAHSGKRFYVDCIPNDMTAENSFPRK 1026

Query: 940  TDD----DSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSG 995
                   +  ++  Y+ +KYG+ L++  QPLLR +      NLL    +     +G    
Sbjct: 1027 EGYLGPLEYSSYAAYYKQKYGVDLVYKKQPLLRGRGVSYCKNLLSPRFEHSEEHEGELEE 1086

Query: 996  MNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNF 1055
               K    +V +PPEL     +P S+V+    LPS+M+R+ES++LA QL++ I      +
Sbjct: 1087 ATDKT--YYVFLPPELCFLHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKDMI-----GY 1139

Query: 1056 HIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWA 1115
             +P+  ILEALT   C E+F  ER ELLGD+ LK+ VS +LFL YP+KHEGQL+  R   
Sbjct: 1140 PVPALKILEALTAASCQETFCYERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQM 1199

Query: 1116 VCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQ 1175
            V N  L++   ++ LQ YI+   F P RW APG L   PV  E   +  E  + G    +
Sbjct: 1200 VSNMVLYQYALNKGLQSYIQADRFSPSRWAAPGVL---PVYDE-DTNEEESSMFGNEIIE 1255

Query: 1176 DTKVVV----------------GKPCDMG-HRWMGSKTIADCAEALIGAYYVGGGLIAAL 1218
            +  V                      D G +R + SKT+AD  EALIG YYV GG  AA 
Sbjct: 1256 NGTVAAKTLAADEFEDEEAEEGELDTDSGSYRVLSSKTMADVVEALIGVYYVDGGKYAAN 1315

Query: 1219 YMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHA 1278
            + MKW+G++ D +    +  I   S+   V R  +   ++  +   F  K LL EAITHA
Sbjct: 1316 HFMKWIGVEVDFDFKETEYSIRPYSIPENVLRSVDFDKLQGALNISFNDKGLLLEAITHA 1375

Query: 1279 SVQE--FYCYQ------------------------------------------------- 1287
            S       CYQ                                                 
Sbjct: 1376 SRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVK 1435

Query: 1288 -NLYKHLQHCSTLLLSQITEYV----KSFPKPGETTDSGPSMKAPKALGDLLESIVGAVL 1342
              L+ HL+H S+ L  QI ++V        KPG  +      KAPK LGD+ ESI GA+ 
Sbjct: 1436 HGLHLHLRHGSSALEKQIRDFVIEVKNELSKPGFNSFGLGDCKAPKVLGDIFESIAGAIF 1495

Query: 1343 IDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAE 1402
            +D+  +   VW++F+P+L P+VTP+ L + P+REL E C      ++   +  G +   E
Sbjct: 1496 LDSGCDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAQGLEYKASRSGNIATVE 1555

Query: 1403 LRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTK 1462
            + +   D + VG  Q   ++    K   Q                               
Sbjct: 1556 VYV---DGIQVGMAQNPQKRKMAQKVGCQ------------------------------- 1581

Query: 1463 EDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGP---RTSLFQLCK 1519
                E P C  ++G +  +      +K                K G P   R +L  +C 
Sbjct: 1582 ----ECPCCVEKRGRKPKLRRLKMGRKK---------------KNGNPSYTRQTLNDICL 1622

Query: 1520 TMLWPMPTFETT-ESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADK 1578
               WPMP + +  E        F  G+   T    +              EC G+P    
Sbjct: 1623 RRNWPMPLYRSVHEGGPAHAKRFTYGVRVNTSDKGWTD------------ECIGEPMPSV 1670

Query: 1579 KSSFDSAA 1586
            K + DSAA
Sbjct: 1671 KKAKDSAA 1678


>gi|357114316|ref|XP_003558946.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Brachypodium
            distachyon]
          Length = 1888

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/1748 (30%), Positives = 796/1748 (45%), Gaps = 344/1748 (19%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL+V E AK RNTIA LETGAGKT+IAV+LIK I   +     K L +FL P V LV
Sbjct: 271  RHYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSICDKMLKENKKMLAVFLVPKVPLV 330

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +Q                                      VLVMT QILL+ LR + + +
Sbjct: 331  YQ--------------------------------------VLVMTAQILLNILRHSIIKM 352

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            D +  +++DECHHA   HPY+ +M EFYH +  D +P VFGMTASPV  KGV+S  DC  
Sbjct: 353  DAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPVVFGMTASPVNLKGVTSQEDCAI 412

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSK-FCGSDLKGK-LEVSWSKFD 282
            +I  LES LDS V TI+D+ E+E  VP   E    YD++   C    + K +E +  +  
Sbjct: 413  KIRNLESKLDSVVCTIKDRKELEKHVPMPFEVVIHYDKAATLCSLHERIKQMEAAVEEAA 472

Query: 283  ASLSKLQGSQLNCYKDMDDKHKTLR-------KQLSDYHAKIL-------YCLDELGLIC 328
             S SK    Q    +D   + + LR       +  SD  A ++       Y L ELG  C
Sbjct: 473  LSSSKRTRWQFMGARDAGSREE-LRLVYGVSERTESDGAANLIQKLRAINYGLGELGQWC 531

Query: 329  AYEAVK---ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI------GSALP------ 373
            AY+  +     L+   +A  + ++  Q S     +L++V+ ++      G+A+       
Sbjct: 532  AYKVAQSFLTALQNDERANYQVDVKFQES-----YLKKVVDLLHCQLTEGAAMKSETNDV 586

Query: 374  ------------LADKIFLDFGFDY-----SKAVDLGYISTKLHELLQLFLSFGKSTQVL 416
                        L D    D   ++       AV  G ++ ++  L+++ L +  +    
Sbjct: 587  EMHSTENHNSSELEDGELPDSHGEHVDEVIGAAVADGKVTPRVQALIKILLKYQHTEDFR 646

Query: 417  CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
             IIFVER++ A V+ +   ++P L+ +  A L G   + +  T ++Q + +  FR G++ 
Sbjct: 647  AIIFVERVVTALVLPKVFAELPSLSFIRCASLIGHNNNQEMRTSQMQ-DTIAKFRDGRIT 705

Query: 477  LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
            LL AT V EEG+ +  C+ VIRFDL KTV +YIQSRGRAR+  S +ILM+ER NL     
Sbjct: 706  LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERANLSHETF 765

Query: 537  LFDIIRSERSVTDTALSRDPEACF-----LKACTYVKTKSYIVESTGASVTTDSSVNLIH 591
            L +   SE ++   A+ R   +       L          Y VESTGA V+ +S+V LIH
Sbjct: 766  LRNARNSEETLRKEAIERTDLSHLDGIPMLNPIHTSPDSMYQVESTGAVVSLNSAVGLIH 825

Query: 592  RYCEMLPSDKYYTPKPIFKYKSAEEA-----YECELTLPSNAPFQTIVGPTSRNKNLSKQ 646
             YC  LPSD+Y   +P F  +  E+      Y C+L LP NAPF+ + GP   +  L++Q
Sbjct: 826  FYCSQLPSDRYSILRPEFIMQKHEKPGGSVEYSCKLQLPCNAPFEKLEGPICSSIRLAQQ 885

Query: 647  LVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRAL 706
             VCL AC+KLH++ A  D LLP      E     + +E  P  GT + +E +       L
Sbjct: 886  AVCLAACKKLHEMSAFTDMLLPD-RGIGEGEKTEQNDEGDPVPGTARHREFYPEGVAEVL 944

Query: 707  SGRW---GEKC---GVILHAYKFNFACSIVT-------EIYSGFVLLIESELDNDVGNFE 753
             G W   G  C      +  Y +   C  V           S F ++  +ELD +V +  
Sbjct: 945  RGEWILSGRDCCQSSQFIKLYMYYVNCVDVGTSKDPFLAQLSNFSIVFGNELDAEVLSMT 1004

Query: 754  LELYLVSKTV--KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFF 811
            ++L+ V+KT+  KA++   G + +   Q+   K F     + +   L V    S      
Sbjct: 1005 MDLF-VAKTMITKASLVFHGPIEITERQLVLLKSFHVRLMSIV---LDVDVDPS------ 1054

Query: 812  LKRETNSLWSPSYMYLLLPL---EIVNTFGDGSWRINWSGINPCA--SVVEFIKEKSFLG 866
                  + W P+  YL +P+   +  + F +  W +  S +N  A  + ++  +   +LG
Sbjct: 1055 -----TTPWDPAKAYLFVPVGAEKCTDAFREIDWTLVNSIVNTDAWNNPLQKARPDVYLG 1109

Query: 867  AAQCNNNGGNSSPCRTSPCKTGC------------------------------------- 889
              +    GG+         + G                                      
Sbjct: 1110 TNE-RTLGGDRREYGFGKLRNGTTFGQKAHPTYGIRGAIAEFDVVKASGLVPARDRGFLN 1168

Query: 890  ----HGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD--- 942
                HGK  + +A+   DAK+L  MVV A H+G+ + +  I  N +AE+ F         
Sbjct: 1169 DSQKHGK--LFMADSCWDAKDLAGMVVTAAHSGKRFYVDSICYNMNAENSFPRKEGYLGP 1226

Query: 943  -DSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKP 1001
             +  ++ +Y+ +KYG+ L++  QPL+R +      NLL    +   + +G     N  K 
Sbjct: 1227 LEYSSYADYYKQKYGVELVYTKQPLIRARGVSYCKNLLSPRFEHSEAKEGVNFSENHDK- 1285

Query: 1002 QMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSL 1061
              +V++PPEL V   +P S+V+    LPS+M+R+ES++LA QL+E I+     + +P++ 
Sbjct: 1286 TYYVYLPPELCVVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKEIID-----YPVPATK 1340

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            ILEALT   C E+F  ER ELLGD+ LK+ VS  LFL YP+KHEGQL+  R   V N  L
Sbjct: 1341 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVL 1400

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTL--EVPLDG----KFFTQ 1175
            ++   ++ LQ YI+   F P RW APG L +          ++  E P+ G    K F  
Sbjct: 1401 YQFALNKTLQSYIQADRFAPSRWAAPGVLPVFDEETRESEPSIFGEEPVLGNEVQKDFDD 1460

Query: 1176 DTKVVVGKPCDMG-----HRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADL 1230
            D    + +  ++      +R + SKT+AD  EALIG YYV GG IAA ++MKW+GI A+L
Sbjct: 1461 DYADSIQEDGEIDGDSGCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAEL 1520

Query: 1231 E--------VSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE 1282
            +        +  + D I R+        IN    +ES +G +F  K  L EAITHAS   
Sbjct: 1521 DPQEIPPPKIYNIPDSIMRS--------IN-FDTLESIMGIKFQNKGFLVEAITHASRPS 1571

Query: 1283 --FYCYQN--------------------------------------------------LY 1290
                CYQ                                                   L+
Sbjct: 1572 SGVSCYQRLEFVGDAVLDHLITKHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLH 1631

Query: 1291 KHLQHCSTLLLSQITEYVKS----FPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTK 1346
             HL+H S+ L +QI E+VK       K G  +      KAPK LGD++ESI GA+ +D+ 
Sbjct: 1632 VHLRHGSSALETQIREFVKDVREEISKSGFNSFGLGDCKAPKVLGDIIESIAGAIFLDSG 1691

Query: 1347 LNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQ 1406
             +   VW++F+P+L P+VTP+ L + P+REL E C      ++   +  G +   E+   
Sbjct: 1692 YDTSAVWKVFQPLLDPMVTPETLPMHPIRELQERCQQQAEGLEYKASRAGNVATVEV--- 1748

Query: 1407 LKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLP 1466
              D + +G  Q   +K A+  AA   L  L+  E               + ++T K+D  
Sbjct: 1749 FVDGIQIGVAQNPQKKMAQKLAARNALVVLKEKESA-------------EAKETEKDD-- 1793

Query: 1467 EPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMP 1526
                              D    A+  T                R +L  +C    WPMP
Sbjct: 1794 ------------------DKKNGAHVFT----------------RQTLNDICLRRQWPMP 1819

Query: 1527 TFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFG-NVECNGDPRADKKSSFDSA 1585
             +             C           FV  + ++  + G   EC G+P    K + DSA
Sbjct: 1820 QYR------------CINEGGPAHAKRFVYAVRVNTSDRGWTDECIGEPMPSVKKAKDSA 1867

Query: 1586 ALIMLHEL 1593
            A+++L  L
Sbjct: 1868 AVLLLELL 1875


>gi|125542181|gb|EAY88320.1| hypothetical protein OsI_09779 [Oryza sativa Indica Group]
          Length = 1883

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/1743 (29%), Positives = 784/1743 (44%), Gaps = 332/1743 (19%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL+V E AK RNTIA LETGAGKT+IAV+LIK +   +     K L +FL P V LV
Sbjct: 268  RQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLVPKVPLV 327

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +Q                                      VLVMT QILL+ LR + + +
Sbjct: 328  YQ--------------------------------------VLVMTAQILLNILRHSIIKM 349

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            D +  +++DECHHA   HPY+ +M EFYH +  + +P VFGMTASPV  KGV+S  DC  
Sbjct: 350  DAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPAVFGMTASPVNLKGVTSQEDCAI 409

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVSWSKFD 282
            +I  LES LDS V TI+D+ E+E  VP   E    YD++    S  +   ++E +  +  
Sbjct: 410  KIRNLESKLDSVVCTIKDRKELEKHVPMPLEVVVQYDKAATLWSLHEQIKQMESTVEEAA 469

Query: 283  ASLSKLQGSQLNCYKDMDDK------HKTLRKQLSDYHAKIL-------YCLDELGLICA 329
             S SK    Q    +D   +      +    +  SD  A ++       Y L ELG  CA
Sbjct: 470  LSSSKRTKWQFMGARDAGSRDELRLVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 529

Query: 330  YEAVK---ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI------GSALP------- 373
            Y+  +     L+   +A  + ++  Q S     +L++V+ ++      G+A+        
Sbjct: 530  YKVAQSFLTALQNDERANYQVDVKFQES-----YLKKVVDLLHCQLTEGAAMKSETSDVE 584

Query: 374  ----------------LADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLC 417
                            L D            AV  G ++ ++  L+++ L +  +     
Sbjct: 585  MQNTEKHNTNDLEEGELPDSHGEHVDEVIGAAVADGKVTPRVQALIKILLKYQHTEDFRA 644

Query: 418  IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
            IIFVER++ A V+ + + ++P L+ +  A L G   + +    ++Q + +  FR G+V L
Sbjct: 645  IIFVERVVTALVLPKVLAELPSLSFIRCASLIGHNNNQEMRACQMQ-DTISKFRDGRVTL 703

Query: 478  LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
            L AT V EEG+ +  C+ VIRFDL KTV +YIQSRGRAR+  S +ILMLERGN+     L
Sbjct: 704  LVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMLERGNISHETFL 763

Query: 538  FDIIRSERSVTDTALSRD-----PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 592
             +   SE ++   A+ R           L          Y VESTGA V+ +S+V LIH 
Sbjct: 764  RNARNSEETLRKEAMERTDLSHLDGTSVLSPVDTSPGSMYQVESTGAVVSLNSAVGLIHF 823

Query: 593  YCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKNLSKQL 647
            YC  LPSD+Y    P F  +  E+      Y C+L LP NAPF+ + GP   +  L++Q 
Sbjct: 824  YCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCNAPFEKLEGPICSSIRLAQQA 883

Query: 648  VCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELH--GTTPI-- 703
            VCL AC+KLH++GA  D LLP      E     + +E  P  GT + +E +  G   I  
Sbjct: 884  VCLAACKKLHEMGAFTDTLLPD-RGSGEGEKTEQNDEGEPLPGTARHREFYPEGVADILR 942

Query: 704  --RALSGRWGEKCGVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDNDVGNFE 753
                LSGR G +    +  Y ++  C        S VT++ S F ++  +ELD +V +  
Sbjct: 943  GEWILSGRDGYQNSQFIKLYMYSVNCVNVGTSKDSFVTQL-SNFAIIFGNELDAEVLSTT 1001

Query: 754  LELYLVSKTV-KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFL 812
            ++L++    + KA++   G++ +   Q+   K F     + +   L V    S       
Sbjct: 1002 MDLFVARTMITKASLVFRGRIEITESQLVLLKSFHVRLMSIV---LDVDVDPS------- 1051

Query: 813  KRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASV------VEFIKEKSFLG 866
                 + W P+  YL +P+       D    I+W+ +N   +       ++  +   +LG
Sbjct: 1052 ----TTPWDPAKAYLFVPVG-AEKCTDPLREIDWTLVNYIVNTDAWNNPLQRARPDVYLG 1106

Query: 867  AAQCNNNGGNSS--------------------------------------PCRTSPCKTG 888
              +    G                                          P R     + 
Sbjct: 1107 TNERTLGGDRREYGFGKLRHGTAFGQKAHPTYGIRGAIAEFDIVKASGLVPARDRGHFSD 1166

Query: 889  CHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD----DS 944
               +  + +A+   +AK+L  MVV A H+G+ + +  I  N +AE+ F          + 
Sbjct: 1167 YQNQGKLFMADSCWNAKDLAGMVVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLEY 1226

Query: 945  KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMH 1004
             ++ +Y+ +KYG+ LI+  QPL+R +      NLL    +   + +G  S    K    +
Sbjct: 1227 SSYADYYKQKYGVELIYRKQPLIRARGVSYCKNLLSPRFEHSDAREGDFSENLDKT--YY 1284

Query: 1005 VHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILE 1064
            V++PPEL +   +P S+V+    LPS+M+R+ES++LA QL++ I     ++ +P++ ILE
Sbjct: 1285 VYLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKDII-----DYPVPATKILE 1339

Query: 1065 ALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL 1124
            ALT   C E+F  ER ELLGD+ LK+ VS  LFL YP+KHEGQL+  R   V N  L++ 
Sbjct: 1340 ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQY 1399

Query: 1125 GTDRKLQGYIRDSAFDPRRWVAPGQLSL---------------RPVPCECGVDTLEVPLD 1169
              ++ LQ YI+   F P RW APG L +                   CE   ++ +   D
Sbjct: 1400 ALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDEESTGCELQKESYDDYAD 1459

Query: 1170 GKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1229
                 +D ++     C   +R + SKT+AD  EALIG YYV GG IAA ++MKW+GI A+
Sbjct: 1460 N--MQEDGEIEGDSSC---YRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAE 1514

Query: 1230 LEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQ 1287
            L+   +          S +  IN    ++  +G EF  K LL EAITHAS       CYQ
Sbjct: 1515 LDPEEIPPPKPYDIPESIMRSIN-FDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQ 1573

Query: 1288 N--------------------------------------------------LYKHLQHCS 1297
                                                               L+ HL+H S
Sbjct: 1574 RLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGS 1633

Query: 1298 TLLLSQITEYVKSFP----KPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1353
            + L +QI E+VK       KPG  +      KAPK LGD++ESI GA+ +D+  +   VW
Sbjct: 1634 SALETQIREFVKDVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVW 1693

Query: 1354 RIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLV 1413
            ++F+P+L P+VTP+ L + P+REL E C      ++   +  G +   E+     D + +
Sbjct: 1694 KVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRAGNIATVEV---FVDGVQI 1750

Query: 1414 GEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKR 1473
            G  Q   +K A+  AA   L  L+  E    K     G+  +  +  T++          
Sbjct: 1751 GVAQNPQKKMAQKLAARNALVVLKEKETATKKEDERDGEKKNGAQMFTRQ---------- 1800

Query: 1474 QKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTES 1533
                                                   +L  +C    WPMP +     
Sbjct: 1801 ---------------------------------------TLNDICLRRQWPMPQYR---- 1817

Query: 1534 KSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFG-NVECNGDPRADKKSSFDSAALIMLHE 1592
                    C           FV  + ++  + G   EC G+P    K + DSAA+++L  
Sbjct: 1818 --------CVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLEL 1869

Query: 1593 LER 1595
            L R
Sbjct: 1870 LNR 1872


>gi|397529815|gb|AFO53518.1| dicer-like protein 4 [Solanum lycopersicum]
          Length = 1620

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/1463 (32%), Positives = 717/1463 (49%), Gaps = 168/1463 (11%)

Query: 45   IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
            I R YQ+ + + A   N +  L TG+GKT IAV+LI ++   IK    K + +FLAPTV 
Sbjct: 47   IARKYQMDLCKKALEENVVVYLGTGSGKTHIAVLLIYEMGHLIKKPQ-KSICVFLAPTVA 105

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LV QQ  VI    DF+V  Y G K       Q W+KE+ + +VLVMTPQILL  L   ++
Sbjct: 106  LVQQQAKVIEESIDFKVGTYCG-KSKHLKSHQDWEKEMEQYEVLVMTPQILLHNLSHCYI 164

Query: 165  SLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSAM 220
             ++ +  ++ DECH+A    +HPY +IMK FY K D   +P++FGMTASP+  KG +   
Sbjct: 165  RIEFIALLIFDECHYAQVESDHPYAEIMKIFY-KPDVVKQPRIFGMTASPISGKGAT--- 220

Query: 221  DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280
                 +  LE+ L S+V+++EDK E+E FV S K +   Y     C +            
Sbjct: 221  -----VEGLETLLRSKVYSVEDKDELEQFVASPKVNVYQYGPGSSCHTK----------- 264

Query: 281  FDASLSKLQGSQLNCYKDM-----DDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKI 335
              A   KL+  +  C K++     D   +  +K L   H  +++ L+ LG++ A +A  I
Sbjct: 265  --AYSQKLEEIKHQCVKELHKKAVDSTLRNTKKMLKRLHGHLIFSLENLGVLGALQASCI 322

Query: 336  CLEKVLKAQE---ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDL 392
             L+     +    E E+       C  +L +V  V  S     D +  D      + +  
Sbjct: 323  LLKGDHHERHQMVEAEVNASDDSLCDRYLSQVDTVFTSGCA-KDGMNPDLAL--MEVLKE 379

Query: 393  GYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGST 452
             Y S KL  L+ +  +FG    + CI+FV RI+ A+ +   ++ +  L+     +L G  
Sbjct: 380  PYFSKKLLRLIGILSNFGVQPDMKCIVFVNRIVTARSLSYILQHLKILSSWKCGFLVGVH 439

Query: 453  TSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
            + + +++ K    +L+ FR G++NLL AT V EEG+ +  C  VIRFDLP+TV+S+IQSR
Sbjct: 440  SGLKSMSRKNTNIILDKFRSGELNLLIATKVGEEGLDIQTCCLVIRFDLPETVASFIQSR 499

Query: 513  GRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYV---KT 569
            GRAR   S++  +++RGN ++ + +    RSE  + D   SR       K+ T V   + 
Sbjct: 500  GRARMPKSEYAFLVDRGNQRELDLIEHFTRSEAQMDDEISSR-------KSRTMVADFQE 552

Query: 570  KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAP 629
              Y V+ TGA+V++  S++L+H YC  LP D+Y+ PKP F Y    +   C+L LPSNA 
Sbjct: 553  NIYKVDMTGATVSSALSISLLHHYCSKLPHDEYFCPKPQFYYFDDVDGTICKLILPSNAA 612

Query: 630  FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGA 689
              +I      +   +K+  CL AC+ LH++GAL D+LLP  +   + +L+   ++S    
Sbjct: 613  MHSIESAPQSSIEAAKKDACLRACKSLHELGALTDYLLPD-QADEDKDLVPDCSDSECCE 671

Query: 690  GTTKRKELHGTTPIRALSGRWGEKCG-VILHAYKFNFACSIVTEIYSGFVLLIESELDND 748
            G   R+ELH      +L   W E    V L++Y  +F       +Y  F L +++ L  +
Sbjct: 672  GEDAREELHEMIVPASLKEPWTETDNPVCLNSYYISFFPFPNDRVYKKFGLFLKAPLPQE 731

Query: 749  VGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGS 807
                +L+L L   ++VK  +  SG    + +++  A+ FQ +FF        +  +S   
Sbjct: 732  AERMKLDLNLARGRSVKTELIPSGTTSFENNEIQLAEKFQRMFFK------IILDRSEFI 785

Query: 808  REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGA 867
             EF    + + + S S  YLLLP   VN FG     ++W  +  C S   F       G 
Sbjct: 786  SEFVSLEKKDFVDSGSKFYLLLP---VNLFGHDKISVDWELVRRCLSSPVF-------GT 835

Query: 868  AQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIV 927
            + C +N  +               ++ + LANGS    ++ + +V        + I ++V
Sbjct: 836  SVCTSNNMSKF-------------EEQLQLANGSKSVHDVVNSLVYVPCKDAFFFISDVV 882

Query: 928  NNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGG 987
             + +A S +      DSK  V ++ + + + L++P QPL++ KQ     NLL        
Sbjct: 883  KDKNAYSMY-----KDSKNHVEHYYDTFSVHLLYPDQPLIKAKQLFCLENLL-------- 929

Query: 988  SGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
              K   S +  K+    V +PPE+  L  +     +  SL LLPS+M RLESL++A +L+
Sbjct: 930  -RKKGYSELRDKEEHF-VELPPEICQLKIIGFSKDIGSSLSLLPSIMHRLESLLVAIELK 987

Query: 1046 EEINCHSRNF----HIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYP 1101
                C S +F     +    +LEALTT  C ESFS+ERLE+LGD+ LK+AV  HLFL + 
Sbjct: 988  ---GCLSASFPEGRELAIDHVLEALTTENCHESFSLERLEVLGDAFLKFAVGRHLFLLHD 1044

Query: 1102 KKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGV 1161
               EGQL+ +RS AV NS L+ +   + LQ YIRD +F+P  +   G    RP P  C  
Sbjct: 1045 AFDEGQLTRKRSNAVNNSNLYMVAIKKNLQAYIRDQSFEPDHFYVVG----RPCPVTCNK 1100

Query: 1162 DTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMM 1221
             T E  + G   +    +     C   H W+  KTIAD  EAL+GA+ V  G  AA+  +
Sbjct: 1101 QT-EKNIHGLCGSGTDGIKTEVRCSKYHHWLRKKTIADIVEALVGAFVVDSGFKAAIAFL 1159

Query: 1222 KWLGIDADL-EVSLVDDCITRASLRSYVPRINEIK--DIESKIGYEFTVKFLLQEAITHA 1278
            KW+GI  D  E  L   C   ++ + ++P  +EI    IE  +GY F  K LL +A  H 
Sbjct: 1160 KWIGIHTDFKEPQLKSIC---SASKVFMPLADEIDVLGIERLLGYSFIHKGLLIQAFIHP 1216

Query: 1279 SVQEF--YCYQNL----------------------------------------------- 1289
            S       CYQ L                                               
Sbjct: 1217 SYNRHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSISVNNNTFAVVAVR 1276

Query: 1290 ---YKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTK 1346
               + H+   S+ L   IT YV    +P  T     S   PKALGDL+ES +GA+L+DT 
Sbjct: 1277 QSFHSHILCDSSDLRESITRYVNFIGRPDSTRGWVKSHLVPKALGDLVESCMGAILLDTG 1336

Query: 1347 LNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQ 1406
             +L+  W+I    L P+++  +L+L P REL ELC S G+ +K   + K      E R+ 
Sbjct: 1337 FDLNRAWQIILSFLKPVMSFTRLQLNPTRELYELCQSFGWNLKFLPSKKDGNFLVEARVN 1396

Query: 1407 LKDVLLVGEGQERSRKAAKGKAA 1429
             ++V         ++K+A+  AA
Sbjct: 1397 GENVSAAASALNINKKSAQRMAA 1419


>gi|125584735|gb|EAZ25399.1| hypothetical protein OsJ_09217 [Oryza sativa Japonica Group]
          Length = 1883

 Score =  640 bits (1651), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 514/1743 (29%), Positives = 782/1743 (44%), Gaps = 332/1743 (19%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL+V E AK RNTIA LETGAGKT+IAV+LIK +   +     K L +FL P V LV
Sbjct: 268  RQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLVPKVPLV 327

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +Q                                      VLVMT QILL+ LR + + +
Sbjct: 328  YQ--------------------------------------VLVMTAQILLNILRHSIIKM 349

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            D +  +++DECHHA   HPY+ +M EFYH +  + +P VFGMTASPV  KGV+S  DC  
Sbjct: 350  DAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPAVFGMTASPVNLKGVTSQEDCAI 409

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVSWSKFD 282
            +I  LES LDS V TI+D+ E+E  VP   E    YD++    S  +   ++E +  +  
Sbjct: 410  KIRNLESKLDSVVCTIKDRKELEKHVPMPLEVVVQYDKAATLWSLHEQIKQMESTVEEAA 469

Query: 283  ASLSKLQGSQLNCYKDMDDK------HKTLRKQLSDYHAKIL-------YCLDELGLICA 329
             S SK    Q    +D   +      +    +  SD  A ++       Y L ELG  CA
Sbjct: 470  LSSSKRTKWQFMGARDAGSRDELRLVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 529

Query: 330  YEAVK---ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI------GSALP------- 373
            Y+  +     L+   +A  + ++  Q S     +L++V+ ++      G+A+        
Sbjct: 530  YKVAQSFLTALQNDERANYQVDVKFQES-----YLKKVVDLLHCQLTEGAAMKSETSDVE 584

Query: 374  ----------------LADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLC 417
                            L D            AV  G ++ ++  L+++ L +  +     
Sbjct: 585  MQNTEKHNTNDLEEGELPDSHGEHVDEVIGAAVADGKVTPRVQALIKILLKYQHTEDFRA 644

Query: 418  IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
            IIFVER++ A V+ + + ++P L+ +  A L G   + +    ++Q + +  FR G+V L
Sbjct: 645  IIFVERVVTALVLPKVLAELPSLSFIRCASLIGHNNNQEMRACQMQ-DTISKFRDGRVTL 703

Query: 478  LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
            L AT V EEG+ +  C+ VIRFDL KTV +YIQSRGRAR+  S +ILMLERGN+     L
Sbjct: 704  LVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMLERGNISHETFL 763

Query: 538  FDIIRSERSVTDTALSRD-----PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 592
             +   SE ++   A+ R           L          Y VESTGA V+ +S+V LIH 
Sbjct: 764  RNARNSEETLRKEAMERTDLSHLDGTSVLSPVDTSPGSMYQVESTGAVVSLNSAVGLIHF 823

Query: 593  YCEMLPSDKYYTPKPIFKYKSAEEA-----YECELTLPSNAPFQTIVGPTSRNKNLSKQL 647
            YC  LPSD+Y    P F  +  E+      Y C+L LP NAPF+ + GP   +  L++Q 
Sbjct: 824  YCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCNAPFEKLEGPICSSIRLAQQA 883

Query: 648  VCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELH--GTTPI-- 703
            VCL AC+KLH++GA  D LLP      E     + +E  P  GT + +E +  G   I  
Sbjct: 884  VCLAACKKLHEMGAFTDTLLPD-RGSGEGEKTEQNDEGEPLPGTARHREFYPEGVADILR 942

Query: 704  --RALSGRWGEKCGVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDNDVGNFE 753
                LSGR G +    +  Y ++  C          VT++ S F ++  +ELD +V +  
Sbjct: 943  GEWILSGRDGYQNSQFIKLYMYSVNCVNVGTSKDPFVTQL-SNFAIIFGNELDAEVLSTT 1001

Query: 754  LELYLVSKTV-KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFL 812
            ++L++    + KA++   G++ +   Q+   K F     + +   L V    S       
Sbjct: 1002 MDLFVARTMITKASLVFRGRIEITESQLVLLKSFHVRLMSIV---LDVDVDPS------- 1051

Query: 813  KRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASV------VEFIKEKSFLG 866
                 + W P+  YL +P+       D    I+W+ +N   +       ++  +   +LG
Sbjct: 1052 ----TTPWDPAKAYLFVPVG-AEKCTDPLREIDWTLVNNIVNTDAWNNPLQRARPDVYLG 1106

Query: 867  AAQCNNNGGNSS--------------------------------------PCRTSPCKTG 888
              +    G                                          P R     + 
Sbjct: 1107 TNERTLGGDRREYGFGKLRHGTAFGQKAHPTYGIRGAIAEFDIVKASGLVPARDRGHFSD 1166

Query: 889  CHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD----DS 944
               +  + +A+   +AK+L  MVV A H+G+ + +  I  N +AE+ F          + 
Sbjct: 1167 YQNQGKLFMADSCWNAKDLAGMVVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLEY 1226

Query: 945  KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMH 1004
             ++ +Y+ +KYG+ LI+  QPL+R +      NLL    +   + +G  S    K    +
Sbjct: 1227 SSYADYYKQKYGVELIYRKQPLIRARGVSYCKNLLSPRFEHSDAREGDFSENLDKT--YY 1284

Query: 1005 VHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILE 1064
            V++PPEL +   +P S+V+    LPS+M+R+ES++LA QL++ I     ++ +P++ ILE
Sbjct: 1285 VYLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKDII-----DYPVPATKILE 1339

Query: 1065 ALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL 1124
            ALT   C E+   ER ELLGD+ LK+ VS  LFL YP+KHEGQL+  R   V N  L++ 
Sbjct: 1340 ALTAASCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQY 1399

Query: 1125 GTDRKLQGYIRDSAFDPRRWVAPGQLSL---------------RPVPCECGVDTLEVPLD 1169
              ++ LQ YI+   F P RW APG L +                   CE   ++ +   D
Sbjct: 1400 ALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDEESTGCELQKESYDDYAD 1459

Query: 1170 GKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1229
                 +D ++     C   +R + SKT+AD  EALIG YYV GG IAA ++MKW+GI A+
Sbjct: 1460 N--MQEDGEIEGDSSC---YRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAE 1514

Query: 1230 LEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQ 1287
            L+   +          S +  IN    ++  +G EF  K LL EAITHAS       CYQ
Sbjct: 1515 LDPEEIPPPKPYDIPESIMRSIN-FDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQ 1573

Query: 1288 N--------------------------------------------------LYKHLQHCS 1297
                                                               L+ HL+H S
Sbjct: 1574 RLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGS 1633

Query: 1298 TLLLSQITEYVKSFP----KPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1353
            + L +QI E+VK       KPG  +      KAPK LGD++ESI GA+ +D+  +   VW
Sbjct: 1634 SALETQIREFVKDVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVW 1693

Query: 1354 RIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLV 1413
            ++F+P+L P+VTP+ L + P+REL E C      ++   +  G +   E+     D + +
Sbjct: 1694 KVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRAGNIATVEV---FVDGVQI 1750

Query: 1414 GEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKR 1473
            G  Q   +K A+  AA   L  L+  E    K     G+  +  +  T++          
Sbjct: 1751 GVAQNPQKKMAQKLAARNALVVLKEKETATKKEDERDGEKKNGAQMFTRQ---------- 1800

Query: 1474 QKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTES 1533
                                                   +L  +C    WPMP +     
Sbjct: 1801 ---------------------------------------TLNDICLRRQWPMPQYR---- 1817

Query: 1534 KSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFG-NVECNGDPRADKKSSFDSAALIMLHE 1592
                    C           FV  + ++  + G   EC G+P    K + DSAA+++L  
Sbjct: 1818 --------CVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLEL 1869

Query: 1593 LER 1595
            L R
Sbjct: 1870 LNR 1872


>gi|75330224|sp|Q8LMR2.1|DCL1_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 1; AltName:
            Full=Dicer-like protein 1; Short=OsDCL1
 gi|21426125|gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group]
 gi|108705906|gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza
            sativa Japonica Group]
          Length = 1883

 Score =  640 bits (1651), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 514/1743 (29%), Positives = 782/1743 (44%), Gaps = 332/1743 (19%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL+V E AK RNTIA LETGAGKT+IAV+LIK +   +     K L +FL P V LV
Sbjct: 268  RQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLVPKVPLV 327

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +Q                                      VLVMT QILL+ LR + + +
Sbjct: 328  YQ--------------------------------------VLVMTAQILLNILRHSIIKM 349

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            D +  +++DECHHA   HPY+ +M EFYH +  + +P VFGMTASPV  KGV+S  DC  
Sbjct: 350  DAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPAVFGMTASPVNLKGVTSQEDCAI 409

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVSWSKFD 282
            +I  LES LDS V TI+D+ E+E  VP   E    YD++    S  +   ++E +  +  
Sbjct: 410  KIRNLESKLDSVVCTIKDRKELEKHVPMPLEVVVQYDKAATLWSLHEQIKQMESTVEEAA 469

Query: 283  ASLSKLQGSQLNCYKDMDDK------HKTLRKQLSDYHAKIL-------YCLDELGLICA 329
             S SK    Q    +D   +      +    +  SD  A ++       Y L ELG  CA
Sbjct: 470  LSSSKRTKWQFMGARDAGSRDELRLVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 529

Query: 330  YEAVK---ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI------GSALP------- 373
            Y+  +     L+   +A  + ++  Q S     +L++V+ ++      G+A+        
Sbjct: 530  YKVAQSFLTALQNDERANYQVDVKFQES-----YLKKVVDLLHCQLTEGAAMKSETSDVE 584

Query: 374  ----------------LADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLC 417
                            L D            AV  G ++ ++  L+++ L +  +     
Sbjct: 585  MQNTEKHNTNDLEEGELPDSHGEHVDEVIGAAVADGKVTPRVQALIKILLKYQHTEDFRA 644

Query: 418  IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
            IIFVER++ A V+ + + ++P L+ +  A L G   + +    ++Q + +  FR G+V L
Sbjct: 645  IIFVERVVTALVLPKVLAELPSLSFIRCASLIGHNNNQEMRACQMQ-DTISKFRDGRVTL 703

Query: 478  LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
            L AT V EEG+ +  C+ VIRFDL KTV +YIQSRGRAR+  S +ILMLERGN+     L
Sbjct: 704  LVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMLERGNISHETFL 763

Query: 538  FDIIRSERSVTDTALSRD-----PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 592
             +   SE ++   A+ R           L          Y VESTGA V+ +S+V LIH 
Sbjct: 764  RNARNSEETLRKEAMERTDLSHLDGTSVLSPVDTSPGSMYQVESTGAVVSLNSAVGLIHF 823

Query: 593  YCEMLPSDKYYTPKPIFKYKSAEEA-----YECELTLPSNAPFQTIVGPTSRNKNLSKQL 647
            YC  LPSD+Y    P F  +  E+      Y C+L LP NAPF+ + GP   +  L++Q 
Sbjct: 824  YCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCNAPFEKLEGPICSSIRLAQQA 883

Query: 648  VCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELH--GTTPI-- 703
            VCL AC+KLH++GA  D LLP      E     + +E  P  GT + +E +  G   I  
Sbjct: 884  VCLAACKKLHEMGAFTDTLLPD-RGSGEGEKTEQNDEGEPLPGTARHREFYPEGVADILR 942

Query: 704  --RALSGRWGEKCGVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDNDVGNFE 753
                LSGR G +    +  Y ++  C          VT++ S F ++  +ELD +V +  
Sbjct: 943  GEWILSGRDGYQNSQFIKLYMYSVNCVNVGTSKDPFVTQL-SNFAIIFGNELDAEVLSTT 1001

Query: 754  LELYLVSKTV-KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFL 812
            ++L++    + KA++   G++ +   Q+   K F     + +   L V    S       
Sbjct: 1002 MDLFVARTMITKASLVFRGRIEITESQLVLLKSFHVRLMSIV---LDVDVDPS------- 1051

Query: 813  KRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASV------VEFIKEKSFLG 866
                 + W P+  YL +P+       D    I+W+ +N   +       ++  +   +LG
Sbjct: 1052 ----TTPWDPAKAYLFVPVG-AEKCTDPLREIDWTLVNNIVNTDAWNNPLQRARPDVYLG 1106

Query: 867  AAQCNNNGGNSS--------------------------------------PCRTSPCKTG 888
              +    G                                          P R     + 
Sbjct: 1107 TNERTLGGDRREYGFGKLRHGTAFGQKAHPTYGIRGAIAEFDIVKASGLVPARDRGHFSD 1166

Query: 889  CHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD----DS 944
               +  + +A+   +AK+L  MVV A H+G+ + +  I  N +AE+ F          + 
Sbjct: 1167 YQNQGKLFMADSCWNAKDLAGMVVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLEY 1226

Query: 945  KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMH 1004
             ++ +Y+ +KYG+ LI+  QPL+R +      NLL    +   + +G  S    K    +
Sbjct: 1227 SSYADYYKQKYGVELIYRKQPLIRARGVSYCKNLLSPRFEHSDAREGDFSENLDKT--YY 1284

Query: 1005 VHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILE 1064
            V++PPEL +   +P S+V+    LPS+M+R+ES++LA QL++ I     ++ +P++ ILE
Sbjct: 1285 VYLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKDII-----DYPVPATKILE 1339

Query: 1065 ALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL 1124
            ALT   C E+   ER ELLGD+ LK+ VS  LFL YP+KHEGQL+  R   V N  L++ 
Sbjct: 1340 ALTAASCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQY 1399

Query: 1125 GTDRKLQGYIRDSAFDPRRWVAPGQLSL---------------RPVPCECGVDTLEVPLD 1169
              ++ LQ YI+   F P RW APG L +                   CE   ++ +   D
Sbjct: 1400 ALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDEESTGCELQKESYDDYAD 1459

Query: 1170 GKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1229
                 +D ++     C   +R + SKT+AD  EALIG YYV GG IAA ++MKW+GI A+
Sbjct: 1460 N--MQEDGEIEGDSSC---YRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAE 1514

Query: 1230 LEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQ 1287
            L+   +          S +  IN    ++  +G EF  K LL EAITHAS       CYQ
Sbjct: 1515 LDPEEIPPPKPYDIPESIMRSIN-FDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQ 1573

Query: 1288 N--------------------------------------------------LYKHLQHCS 1297
                                                               L+ HL+H S
Sbjct: 1574 RLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGS 1633

Query: 1298 TLLLSQITEYVKSFP----KPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1353
            + L +QI E+VK       KPG  +      KAPK LGD++ESI GA+ +D+  +   VW
Sbjct: 1634 SALETQIREFVKDVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVW 1693

Query: 1354 RIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLV 1413
            ++F+P+L P+VTP+ L + P+REL E C      ++   +  G +   E+     D + +
Sbjct: 1694 KVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRAGNIATVEV---FVDGVQI 1750

Query: 1414 GEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKR 1473
            G  Q   +K A+  AA   L  L+  E    K     G+  +  +  T++          
Sbjct: 1751 GVAQNPQKKMAQKLAARNALVVLKEKETATKKEDERDGEKKNGAQMFTRQ---------- 1800

Query: 1474 QKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTES 1533
                                                   +L  +C    WPMP +     
Sbjct: 1801 ---------------------------------------TLNDICLRRQWPMPQYR---- 1817

Query: 1534 KSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFG-NVECNGDPRADKKSSFDSAALIMLHE 1592
                    C           FV  + ++  + G   EC G+P    K + DSAA+++L  
Sbjct: 1818 --------CVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLEL 1869

Query: 1593 LER 1595
            L R
Sbjct: 1870 LNR 1872


>gi|449457995|ref|XP_004146733.1| PREDICTED: dicer-like protein 4-like [Cucumis sativus]
          Length = 1657

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 474/1501 (31%), Positives = 732/1501 (48%), Gaps = 160/1501 (10%)

Query: 23   MGSSGHDHAVDGPSSSTNSIN--FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLI 80
            MG S  +    G S+ T+  +   I R YQL++ + A   N I  L TG GKT IA++LI
Sbjct: 28   MGPSLMNDQDAGSSTRTSEKDPRRIARKYQLELCKKALEENIIVYLGTGCGKTHIAILLI 87

Query: 81   KDIAQAIKS--NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGV--DEWDSQ 136
             +++  I+S  NG   + +FLAPTV LV QQ  VI    DF+V  Y G   +    +D  
Sbjct: 88   YELSHLIRSSQNG---ICVFLAPTVALVQQQAKVIEDSLDFKVRVYCGGSKILNSHYD-- 142

Query: 137  CWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT--GNHPYTKIMKEFY 194
             W++E+ + +V VMTP+I L  L   ++ +D V  ++ DECHHA    +H Y +IM+ FY
Sbjct: 143  -WEREMEEYEVFVMTPEIFLRNLYHCYIKMDCVELLIFDECHHAQVKSDHSYAEIMRVFY 201

Query: 195  HKSDNK-PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSA 253
              +D K P++FGMTASPVV KG     +    I+ LE  LD++V+++E++ E+  FV S 
Sbjct: 202  KANDPKRPRIFGMTASPVVGKGACHQQNLSRSINSLEKLLDAKVYSVENREELHAFVSSP 261

Query: 254  KESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTL---RKQL 310
              +  +Y      G    G        + + L  ++   +     +  +H+ L   +K L
Sbjct: 262  LVNIYYY------GPVANGSSSSF-MSYSSRLEDVKRKCIVALGQVKSEHEVLLATKKLL 314

Query: 311  SDYHAKILYCLDELGLICAYEAVKICLE-------KVLKAQEECEIYRQSSLQCKYFLEE 363
               H  IL+CL+ LG+  A +A KI L        ++++A E     +  SL  +Y L +
Sbjct: 315  FRMHENILFCLESLGVWGALQACKILLSGDNSERSELIEAAERNP--KNDSLSDRY-LNQ 371

Query: 364  VLHVIGSALP----LADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCII 419
               +  S       ++D + +D   D        + S KL  L+ +  SF +   + CII
Sbjct: 372  AAEIFASGCKKDGGISDMLNVDILED-------PFFSKKLLRLIGILSSFRQQLNMKCII 424

Query: 420  FVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLF 479
            FV RI+ A+ +   ++ + FL +    +L G  + + +++ K    +L  FR G++NLL 
Sbjct: 425  FVNRIVIARSLSYILQNLNFLAYWKCDFLVGVHSKLRSMSRKTMNHILTKFRSGELNLLI 484

Query: 480  ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
            AT V EEG+ +  C  VIRFDLP+TVSS+IQSRGRAR   S++  +++ GN K+   + +
Sbjct: 485  ATKVGEEGLDIQTCCLVIRFDLPETVSSFIQSRGRARMPQSEYAFLVDSGNEKELGLINE 544

Query: 540  IIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPS 599
              + E  +     SR     F       +   Y V STGAS+T+  S++L+H YC  LP 
Sbjct: 545  FRKDENRMNREIYSRSSNETFDSH----EESIYRVASTGASITSGRSISLLHEYCSKLPH 600

Query: 600  DKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQV 659
            D Y+ PKP F Y        C + LPSNAP   IV  +  +K+ +K+  CL+A E+LH++
Sbjct: 601  DDYFDPKPQFSYYDDLGGTVCHVNLPSNAPIPQIVSRSQSSKDAAKKDACLKAVEELHKL 660

Query: 660  GALNDHLLPSVEEPSENNLISKKN--ESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVI 717
            GAL+D+LLP     S N   S  N  +S      T R+ELH      AL   W     ++
Sbjct: 661  GALSDYLLPMRGRGSANEQESGLNSSDSDSSEDETSRRELHEMIFPAALKESWTGSGYLV 720

Query: 718  LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV-SKTVKATVSSSGQVHLD 776
            L+ Y            Y  F L +++ L  +     LEL+L   ++V   +  SG V L 
Sbjct: 721  LYCYHIKCTPDPRDRNYKEFGLFVKAPLPQEAERMGLELHLARGRSVMVNLIPSGVVELL 780

Query: 777  ADQMSKAKCFQELFFNGLFGKL-FVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVN 835
             +++++A+ FQE+F   +  +L FV+         ++    N+  S S  YLLLP+   +
Sbjct: 781  EEEITQAESFQEMFLKVILDRLEFVQE--------YIPLRNNASRSVSSSYLLLPMIFHD 832

Query: 836  TFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVI 895
               +GS  I+W+ I  C S       K F   A     G  SS                +
Sbjct: 833  N--EGSLFIDWNVIRRCLS------SKIFQNDACLIVKGTASSDTH-------------L 871

Query: 896  HLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSE-- 953
             L +G   + ++++ +V   + G  + +  I      E   +G++   +  F ++F    
Sbjct: 872  MLYDGHRRSSDIENSLVYVPYKGEFFFVTNI------ERGKNGHSQYKNSGFSSHFEHLK 925

Query: 954  -KYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL- 1011
             K+GI L +P QPLLR K     HN L N        +  +        +  + +PPE+ 
Sbjct: 926  TKFGIHLNYPEQPLLRAKPLFLLHNWLHN--------RKREDSEARHLEEYFIELPPEVC 977

Query: 1012 -LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI-NCHSRNFHIPSSLILEALTTL 1069
             L  +     +  S+ LLPS+M RLE+L++A +L+  +         + ++ ILEALTT 
Sbjct: 978  QLKIIGFSKDIGSSISLLPSIMHRLENLLVAIELKCRLAAAFPAGAEVTANRILEALTTE 1037

Query: 1070 GCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRK 1129
             C E  S+ERLE+LGDS LK+AV+ +LFLT+ K  EG+L+ RRS+ V N  L KL T + 
Sbjct: 1038 KCQERISLERLEILGDSFLKFAVARYLFLTHDKFDEGELTRRRSYLVKNFNLLKLATRKN 1097

Query: 1130 LQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGH 1189
            LQ YIRD  F+P ++   G    RP P  C  +T +        T + K    K C  GH
Sbjct: 1098 LQVYIRDQPFEPSQFYLLG----RPCPRICNEETSKDIHSHDDATNNAKANETK-CSKGH 1152

Query: 1190 RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP 1249
             W+  KTI+D  EAL+GA+ V  G  AA+  +KW+GI  + E SLV D +  ++    + 
Sbjct: 1153 HWLQKKTISDVVEALVGAFLVDSGFKAAIAFLKWIGIQVEFEASLVTDALMASNAYVLLA 1212

Query: 1250 RINEIKDIESKIGYEFTVKFLLQEAITHASVQEF--YCYQNL------------------ 1289
               +I  +++ +G+ F  K LL +A+ H S  +    CYQ L                  
Sbjct: 1213 DSIDISALQNSLGHRFLHKGLLLQALVHPSYHKHGGGCYQRLEFLGDAVLDYLITSYLYS 1272

Query: 1290 --------------------------------YKHLQHCSTLLLSQITEYVKSFPKPGET 1317
                                            YK L   ST LLS I  YV     P   
Sbjct: 1273 AYPKLKPGQLTDLRSVFVRNEAFANVAVDRFFYKFLLCDSTSLLSDIKSYVHFIKAPPFE 1332

Query: 1318 TDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLREL 1377
             DS    + PKALGDL+ES VGAVL+DT  +++ VW+I    + PI++    +L P+R++
Sbjct: 1333 RDSLEQPRCPKALGDLVESSVGAVLVDTGFDMNCVWKIMLSFIDPIMSFSGFQLSPIRDI 1392

Query: 1378 IELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
             E C + G+ +K N +        +  ++  +         R +K A   AA+ +L KL+
Sbjct: 1393 TEFCQNCGWKLKFNSSKMEGYYSVKAEVKGGNFHATASAANRRKKDAAKIAANLILTKLK 1452

Query: 1438 V 1438
             
Sbjct: 1453 A 1453


>gi|356565129|ref|XP_003550797.1| PREDICTED: dicer-like protein 4-like [Glycine max]
          Length = 1636

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 468/1423 (32%), Positives = 701/1423 (49%), Gaps = 163/1423 (11%)

Query: 45   IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
            I R YQL++ + A   N I  L TG GKT IAV+L+  +   I+    K + +FLAPTV 
Sbjct: 49   IARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMYGMGHLIRKPQ-KNICVFLAPTVA 107

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LVHQQ  VI   T+F+V  Y G+    +   Q W++EI + +VLVMTPQILL  L   F+
Sbjct: 108  LVHQQAKVIADSTNFKVGTYCGSSKRLK-RHQDWEQEIGQYEVLVMTPQILLHNLSHCFI 166

Query: 165  SLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAMD 221
            +++++  ++ DECHHA    NH Y  IMK FY  + +K P++FGMTASPVV KG SS  +
Sbjct: 167  TMEMIALLIFDECHHAQVKSNHAYAVIMKVFYKSNSSKVPRIFGMTASPVVGKGASSEAN 226

Query: 222  CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281
                I+ LE  LD++V+++EDK E++ FV +   +   Y  +    + L  K+E    + 
Sbjct: 227  LAKSINSLEHILDAKVYSVEDK-ELQSFVTTPVINIYHYVSTASGETSLYLKIEEIKRQC 285

Query: 282  DASLSKLQGSQLNCYKDMDDKHKTL--RKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339
             A+L +           ++D  K +  +K L+  H  +++ L  LG+  A +A  I L  
Sbjct: 286  IANLGR----------SIEDHQKRMNAKKLLNRMHDNVIFGLQNLGIWGALQASHILLSG 335

Query: 340  VLKAQEE---CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG--Y 394
                + E    E        C  +L +   +  S   + D++      D S    L   +
Sbjct: 336  DRSERHELVEAEGNSSDDSLCDKYLAQAAELFTSQCMIGDRVT-----DLSSVEILKEPF 390

Query: 395  ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS 454
             S KL  L+ +  +F     + CIIFV RI+ A+ +   ++K+  L      +L G    
Sbjct: 391  FSAKLLRLIGILSNFRLQKNMKCIIFVNRIVTARSLSYILQKLKLLRQWRSDFLVGVHAG 450

Query: 455  VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
            + +++ K    +++ FR G++NLL AT V EEG+ +  C  VIRFDLP+TV+S+IQSRGR
Sbjct: 451  LKSMSRKTMNIIVDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR 510

Query: 515  ARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIV 574
            AR   S++  +++ GN K+ + +    + E  +      R  +  ++      + + + V
Sbjct: 511  ARMPQSEYAFLVDSGNKKELDIIDGFEKDEYRMNMEITFRTSKETYIIP----EERIFRV 566

Query: 575  ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIV 634
            +S+GASV++  S++L+H+YC  LP D+Y+ PKP F Y        C +TLPSNAP   I+
Sbjct: 567  DSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPCFYYLDDSGGISCHITLPSNAPINQIL 626

Query: 635  GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKR 694
            G    +   SK+  CL+A E+L+ +G L+D LLP  ++      +S  ++         R
Sbjct: 627  GTPQLSMEASKRDACLKAIEELYNLGTLSDCLLPKQDDAEPEAQVSGSSDEDECEDAISR 686

Query: 695  KELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFE 753
             ELH      A    W  E   V L++Y   F       +Y  F L I   L  +    E
Sbjct: 687  GELHEMLVPSAFGQSWINEDNIVRLNSYYIKFCPYPEDRVYKEFGLFIMVRLPMEAEKLE 746

Query: 754  LELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKL-FVKSKSSGSREFF 811
            L+L+L   ++V       G V  D D++  A+ FQE+F   +  +L FV        EF 
Sbjct: 747  LDLHLAHGRSVMTKFVPFGVVEFDKDEIKMAENFQEMFLKIILDRLEFVS-------EFV 799

Query: 812  -LKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQC 870
             L     S    S  YLLLP+ ++  +G+ + +++W  +  C                  
Sbjct: 800  DLGMGAESHTGTSTFYLLLPV-VLQEYGN-AMKVDWKTVKRCL----------------- 840

Query: 871  NNNGGNSSPCRTSPCKTGCHGKDV------IHLANGSVDAKNLKDMVVLAIHTGRIYSIV 924
                   SP    P  T    K V      + LANG    +++++ +V A H    Y + 
Sbjct: 841  ------CSPIFRHPADT--MDKKVFPLDIHLQLANGYRSVRDVENSLVYAPHKKNFYFVT 892

Query: 925  EIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFND 984
             +    +  SP   + D  + ++V+YF EK+ I L  P QPLL +K   N HNLL N   
Sbjct: 893  NVNYQKNGYSP---HNDSGTSSYVDYFIEKFSIHLKCPEQPLLHVKPVSNLHNLLHN--- 946

Query: 985  GGGSGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLMLAS 1042
                 +  +     +  +  +++PPEL  L  +     +  S+ LLPS+M RL +L++A 
Sbjct: 947  -----RKHEDAEPQELDEYLIYLPPELCELKIIGFSKDIGSSISLLPSIMHRLGNLLVAI 1001

Query: 1043 QLREEI-NCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYP 1101
            +L+  + +       I +  +LEALTT  C E FS+ERLE+LGD+ LK+AV+ H FL + 
Sbjct: 1002 ELKHRLSSSFPEAAEISALRVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHD 1061

Query: 1102 KKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGV 1161
              HEG L+ RRS AV NS L KL   R LQ YI D  FDP ++ A G    RP P  C  
Sbjct: 1062 SLHEGDLTKRRSNAVNNSNLFKLAIKRNLQVYICDQTFDPTQFYALG----RPCPRLCSN 1117

Query: 1162 DTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMM 1221
            +T E         ++   V    C+  H W+  KTIAD  EAL+GA+ V  G  AA+  +
Sbjct: 1118 ETKESIHFCLNSVKEQGKVTETQCNKNHHWLHRKTIADVVEALVGAFLVDSGFKAAIAFL 1177

Query: 1222 KWLGIDADLEVS-LVDDCITRASLRSYVPRINE--IKDIESKIGYEFTVKFLLQEAITHA 1278
             W+GI  D E S +VD CI  A   SY+P  +E  I  +E K+G+ F  K LL +A  H 
Sbjct: 1178 SWIGIQVDFEASQVVDICIASA---SYLPLSSEVDIPSLEGKLGHHFFHKGLLLQAFVHP 1234

Query: 1279 SVQEF--YCYQNLYKHLQHCSTLLLSQITEYV-KSFP--KPGETTD-------------- 1319
            S  +    CYQ L + L     +L   IT YV  ++P  KPG+ TD              
Sbjct: 1235 SYNKLGGGCYQRL-EFLG--DAVLDYLITSYVFSAYPKLKPGQLTDLRSLSVNNKAFACL 1291

Query: 1320 --------------------------------------SGPSMKAPKALGDLLESIVGAV 1341
                                                   GP  K PKALGDL+ES VGA+
Sbjct: 1292 AVDRSFDKFLLCDSSGLSEAIKKYVDYIRRPVSDNSIKEGP--KCPKALGDLVESCVGAI 1349

Query: 1342 LIDTKLNLDEVWRIFKPILSPIVT-PDKLELPPLRELIELCDS 1383
            L+D+  NL++VW+I    L  I+     L+L P+R+L ELC S
Sbjct: 1350 LLDSGFNLNKVWKIMTSFLDSIMKFSSSLQLSPVRDLRELCQS 1392


>gi|157285013|gb|ABV31246.1| dicer-like 4 [Physcomitrella patens]
          Length = 1445

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 467/1492 (31%), Positives = 738/1492 (49%), Gaps = 197/1492 (13%)

Query: 44   FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
              PR YQ++  E AK+ + I  LETG GKT +AVML++ IA  I+     ++ +FL P+V
Sbjct: 29   LTPRGYQIEALERAKKEDIIVYLETGCGKTHVAVMLLQHIADLIRKPS-TRIAVFLCPSV 87

Query: 104  HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
             LV QQ  V++ +T+F+V EYYG    + W+S+ W+ E+   ++ VMTP ILL  L   F
Sbjct: 88   PLVQQQARVVKRYTNFKVGEYYGEVNNNAWNSKAWEAELENTEIFVMTPAILLHNLHHCF 147

Query: 164  LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK---PKVFGMTASPVVRKGVSSAM 220
            + +D +  ++ DECHHA  +HPY  IM+EFYH  ++    P++ GMTASP+  K     +
Sbjct: 148  MRMDCIELLIFDECHHAHSHHPYANIMQEFYHGKEDLYRLPRILGMTASPINGK-----V 202

Query: 221  DCEG-----QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQS--------KFCG 267
            +C+G     +I ++E  L +++ T+++ +E+++ VP       +Y+ +        KFC 
Sbjct: 203  NCQGDSIRTKIDKIERMLHAKLHTVKESSELDLVVPRPHHKSEYYESAQTPNPVTLKFC- 261

Query: 268  SDLKGKLEVSWSKFDASLSKLQGSQLN--CYKDMDDKHKTLRKQLSDYHAKILYCLDELG 325
              L   L+          S  +G  L   C      + K ++K  +     + YC  ELG
Sbjct: 262  -QLLFDLQKECIGTLLGTSGCEGELLGELCSGVEKKRVKNVKKLCNS----LGYCATELG 316

Query: 326  LICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY-FLEEVLHVIGSALPLADKIFLDFGF 384
              CAYEAVKI L K      +C+    S+ + K   L ++L+ + S L  + ++      
Sbjct: 317  PRCAYEAVKILLHKY---DSDCDPELDSNSEGKKDMLRKILNALNSFL--SKEVEATSCA 371

Query: 385  DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HL 443
                A ++  +S+K+  L+ +      + ++ CIIFVER I  +V+   +  +  L+   
Sbjct: 372  VPDGAANIQNLSSKVQLLINVLERCRDTNEMRCIIFVERKITTRVLASLLSSIEVLSPAF 431

Query: 444  TVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK 503
                L G  +  + +  K Q+ V+ESFR G+VN+L +T+V EEG+ + NC  VIRFDLP 
Sbjct: 432  RFQSLAGKNSGSNDMNHKHQQNVVESFRNGEVNVLVSTNVAEEGLDIQNCHLVIRFDLPN 491

Query: 504  TVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKA 563
            T  S IQSRGRAR   S  I + ERGN +Q  +L   + +E S+ +  LSR   A  + A
Sbjct: 492  TPCSLIQSRGRARCLKSTIIYLTERGNNEQSQRLEQFLLTEESMKEEVLSRIKNAEDVGA 551

Query: 564  CTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELT 623
                  +++ VESTGA+++T  SV+L+H+YC  L  D +YTP P F Y       +C + 
Sbjct: 552  PETSTIETFRVESTGATMSTLCSVSLLHQYCARLAHDSFYTPTPQFSYSEDGSGVKCTIK 611

Query: 624  LPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKN 683
            LP++A  Q++ G    ++  +K++ CL ACE+L+  GAL + LL      S+ N  S   
Sbjct: 612  LPTDALVQSVEGRPVSSQADAKRVACLIACERLYDAGALTELLLLK----SKENAYSLDA 667

Query: 684  ESLPGAGTTKRKELHGTTPI--RALSGRWGEKCGVI-LHAYKFNFACSIVTEIYSGFVLL 740
             +     TT R  L   + I   A SG WG     + LHAY  +F  +     Y  F L 
Sbjct: 668  IAPESNSTTGRDPLPSRSIIVPDAFSGTWGSGLNSVELHAYAISFVATPNDRAYVNFGLF 727

Query: 741  IESELDNDVGNFELELYLVSKT-VKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLF 799
            +E+++  + G+ E+EL L ++  V A  S  G +  + DQ + AK  + +F + L  K  
Sbjct: 728  LEADMGPEAGSIEVELQLSNRRLVNAKCSPCGTILFEPDQSTNAKSSRAIFSSVLDQKPP 787

Query: 800  VKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFI 859
            V +            E +  W+ + +YLLLPL+        S  I+W  I    S V   
Sbjct: 788  VPNI-----------ELSGEWNSNRLYLLLPLKEKQDALPLS--IDWDCIEDLISDV--- 831

Query: 860  KEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGR 919
              K +    +  +    SS               ++ L +G    +++ + ++   HTG+
Sbjct: 832  -MKGYNTLEEVPSEIPRSS---------------LLRLIDGYFPVEHVTNSLIQTEHTGK 875

Query: 920  --IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHN 977
              +Y   E++ + + +SP          ++ +Y+ +K+   L    QP+L+ K     +N
Sbjct: 876  RCLYCARELIPDMNGQSPMIMKV-SKYNSYSDYYLKKHNRTLNFVEQPMLKAKPLIQVNN 934

Query: 978  LLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRL 1035
            LL             +     +K +  V +P EL  ++   +  ++   + LLPS M RL
Sbjct: 935  LLTQ------RTTSERPAAEEQKTESLVELPLELCKIMVKGLSCALTNGISLLPSFMHRL 988

Query: 1036 ESLMLASQLREEI-NCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSC 1094
            E L+LA Q R+ + + HS    +P++L+LEA+TT  C ESFS+E LELLGD+ L+ +VS 
Sbjct: 989  EGLLLAVQFRKSLPSPHSSP--VPANLMLEAITTSKCQESFSLEGLELLGDAFLEVSVSE 1046

Query: 1095 HLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRP 1154
             LFL + +  EG+LS RR+  +CN  L +LG +R +  YIRD+ F P+ W  PG+  +R 
Sbjct: 1047 RLFLLHNRLDEGELSKRRTNLICNKMLERLGRERGIMNYIRDTQFSPKEWATPGR--VRE 1104

Query: 1155 VPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL 1214
              C+        PL G                        KTIAD  EALIGA+Y+ GG+
Sbjct: 1105 TQCKLP------PLQG------------------------KTIADVFEALIGAHYIHGGV 1134

Query: 1215 IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEA 1274
             AA  MM WLG +  +  S+ ++  TR   +  +    ++ ++E  + Y+F  K LL EA
Sbjct: 1135 EAAQAMMGWLGCEVGVSSSIREEARTRVHGQLELLSEAKVSELEILLNYKFQNKGLLVEA 1194

Query: 1275 ITHASVQEFY--CYQ--------------------------------------------- 1287
            +THAS +     CYQ                                             
Sbjct: 1195 LTHASCRRHSGDCYQRLGFLGDAVLDFLITKHFYANSANLKRDPGLLTDLRSAAVNNECF 1254

Query: 1288 -------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGP-----------SMKAPKA 1329
                   NL+ +L H S+ L +++ +YV      G TTD              S  + + 
Sbjct: 1255 ARVAVRHNLHLYLLHNSSDLAARVDKYVH-----GSTTDVCALSEAFLLSKHLSCSSMQV 1309

Query: 1330 LGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVK 1389
            L DL+ES+ GAV +D+   LD VW +FK +L P+VTP  L L P+REL ELC +   F +
Sbjct: 1310 LSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPATLRLEPIRELWELCQT-EKFGE 1368

Query: 1390 ENCTLKGEMV---HAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438
             N   K E +      + ++LKD  + G G++   K+A+  AA Q L+ L+V
Sbjct: 1369 PNYKKKREAMGDFDMTVTVELKDETITGVGRKPDEKSARKVAAIQALETLKV 1420


>gi|255565079|ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis]
 gi|223537239|gb|EEF38871.1| Ribonuclease III, putative [Ricinus communis]
          Length = 1633

 Score =  627 bits (1618), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 461/1496 (30%), Positives = 723/1496 (48%), Gaps = 159/1496 (10%)

Query: 24   GSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDI 83
            G    D     P         I R YQL++ + A   N I  L TG GKT IAV+LI ++
Sbjct: 24   GDDDGDECNSMPQQPEKDPRKIARKYQLELCKKALEENIIVYLGTGCGKTHIAVLLIYEL 83

Query: 84   AQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEIN 143
               I+    K + +FLAPTV LV QQ  VI    DF+V  Y G     +   + W+KEI 
Sbjct: 84   GHLIR-KPLKNVCVFLAPTVALV-QQVRVIEQSIDFKVGVYCGNSNHLK-SHRDWEKEIE 140

Query: 144  KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKSDNK- 200
            +N+VLVMTPQILL  L  +F+ ++++  ++ DECHHA    +HPY +IMK FY   D K 
Sbjct: 141  QNEVLVMTPQILLHTLGHSFIKMELISLLIFDECHHAQVQSSHPYAEIMKVFYKTGDGKF 200

Query: 201  PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY 260
            P++FGMTASPVV KG S+  +    I+ LE+ LD++V+++ED  E+E+FV  A    R Y
Sbjct: 201  PRIFGMTASPVVGKGASNQANLPKSINSLENLLDAKVYSVEDNEELELFV--ASPVVRIY 258

Query: 261  DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKH---------KTLRKQLS 311
              +               S +    SKL+  +  C  ++  K          +  +K   
Sbjct: 259  LYAPVANE--------KSSSYMTYFSKLEEIKRKCLLELHKKADSCQSLHGLQNAKKVFI 310

Query: 312  DYHAKILYCLDELGLICAYEAVKICLEK---VLKAQEECEIYRQSSLQCKYFLEEVLHVI 368
              H  +++CL+ LG   A +A KI L        A  E E    +S+ C  +L +  ++ 
Sbjct: 311  RMHDNVVFCLENLGFWGALQACKILLSDDHFEWNALIEAEGNIDASV-CDKYLAQAANMF 369

Query: 369  GSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAK 428
             S   +  K  + F     + +   + S KL  L+ +  +F     +  I+FV RI+ A+
Sbjct: 370  AS---VCTKDCIAFDLSSVEVLTEPFFSRKLLRLIGILSTFRLQPNMKGIVFVNRIVTAR 426

Query: 429  VVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488
             +   ++ + FL      +L G  + + +++ K    +LE F+ GK+NLL AT V EEG+
Sbjct: 427  SLSYVLQNLKFLISWKCDFLVGVHSGLKSMSRKTMNSILEKFKTGKLNLLIATKVGEEGL 486

Query: 489  HVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVT 548
             +  C  V+RFDLP+TV+S+IQSRGRAR   S++  +++ GN K+ + +    R E  + 
Sbjct: 487  DIQTCCLVVRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQKELDLIERFRRDEDRMN 546

Query: 549  DTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPI 608
                SR     F+     ++ K Y V+ +GA +++  S++L+H YC  LP D+Y+ PKP 
Sbjct: 547  MEISSRTSNETFVS----IEEKVYKVDESGACISSAYSISLLHHYCSKLPHDEYFDPKPQ 602

Query: 609  FKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
            F +        C + LP+NAP   IVG    ++  +K+  CL+A E+LH++G+L++ LLP
Sbjct: 603  FFFFDDLGGTICHIILPANAPVHQIVGTPQSSREAAKKDACLKAIEQLHKLGSLSNFLLP 662

Query: 669  SVEEPSENNLI-SKKNESLPGAGTTKRKELHGT-TPIRALSGRWGEKCGVILHAYKFNFA 726
              ++ +E +++ S + E+  G G   R ELH    P          +  + LH+Y   F 
Sbjct: 663  HEKDVNEESMLASSEPENNEGEGV--RGELHEMLVPAVFKESLTSSENWINLHSYFIKFC 720

Query: 727  CSIVTEIYSGFVLLIESELDNDVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKC 785
                  IY  F L I + L  +    EL L+L   + V   +   G +    D++++A  
Sbjct: 721  PVPEDRIYKKFGLFIRAPLPLEAEQMELNLHLACGRYVATKLVPLGCLAFHRDEITQAIY 780

Query: 786  FQELFFNGLFGKL-FVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRI 844
            FQE+F   +  +  FV    +  +  F +       SPS+ YLLLP+ + +        +
Sbjct: 781  FQEMFLKVILDRSDFVPEFVTLGKNSFFES------SPSF-YLLLPVLLCD--HGNRVTV 831

Query: 845  NWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDA 904
            +W  +  C                        SSP      K      D + LANG    
Sbjct: 832  DWETVGRCL-----------------------SSPVFRCVEKECLPSDDCLQLANGCRSI 868

Query: 905  KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQ 964
            +++++ +V   H    Y I  I    +A SP   ++   + +++ +  +++GI L +P Q
Sbjct: 869  RDIENSLVYIPHKKHFYFITNIDRGKNARSPHKCSS---TSSYMEFLIQRFGIQLKYPEQ 925

Query: 965  PLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVV 1022
            PLL+ K   + HNLL N        +  +  +  +  +  +  PPEL  L  +     + 
Sbjct: 926  PLLQAKPLFSLHNLLHN--------RRKEDSVTQELDEYLIDFPPELCELKIIGFSKDIG 977

Query: 1023 KSLYLLPSVMQRLESLMLASQLREEINC-HSRNFHIPSSLILEALTTLGCCESFSMERLE 1081
             S+ LLPS+M RLE+L++A +L+  ++   S    + +  ILEALTT  C E  S+ERLE
Sbjct: 978  SSISLLPSIMHRLENLLVAIELKSLLSASFSEGAEVTAYRILEALTTERCQERLSLERLE 1037

Query: 1082 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
            +LGD+ LK+AV  HLFL +    EG+L+ +RS AV NS L KL + R LQ YIRD  FDP
Sbjct: 1038 ILGDAFLKFAVGRHLFLLHDTLDEGELTRKRSNAVNNSNLLKLASRRNLQVYIRDQPFDP 1097

Query: 1142 RRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP------CDMGHRWMGSK 1195
            R++ A G     P P  C  ++     +G   + +     G+       C  GH W+  K
Sbjct: 1098 RQFFALGH----PCPVICTKES-----EGSIHSSNRSNAKGQENTIEVRCSRGHHWLYKK 1148

Query: 1196 TIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDD-CITRASLRSYVPRINEI 1254
            TIAD  EAL+GA+ V  G  AA   +KWLGI  ++E S V   C+   +     P I ++
Sbjct: 1149 TIADVVEALVGAFIVDSGFRAATAFLKWLGIRVNIEASDVTKVCLASRTFMPLAPSI-DV 1207

Query: 1255 KDIESKIGYEFTVKFLLQEAITHASVQEF--YCYQNL----------------------- 1289
              +E  + ++F  + L+ +A  H S  +    CYQ L                       
Sbjct: 1208 SSLEDSLDHQFVNRGLVLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLFSVYPKL 1267

Query: 1290 --------------------------YKHLQHCSTLLLSQITE-YVKSFPKPGETTDSGP 1322
                                      +     C +  LS+  E YV    +P    DS  
Sbjct: 1268 KPGLLTDLRSALVNNRAFAIVAVDRSFNEFLICDSGNLSEAIETYVNFVKRPAVEKDSLE 1327

Query: 1323 SMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCD 1382
              K PK LGDL+ES +GA+ +DT  +L+ +W++    L PI+    + L P REL E C+
Sbjct: 1328 GPKCPKVLGDLVESCIGAIFLDTGFDLNCIWKLMLSFLDPILNSSNVLLNPFRELHEFCE 1387

Query: 1383 SLGYFVKENCTLKGEM-VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
            S  + ++   TLK +M    E ++  KD+ L       ++K A   A+ Q++ KL+
Sbjct: 1388 SHKWKLQFP-TLKRDMNFLVEAKVTGKDICLDASANNSNKKEAIRIASEQIIVKLK 1442


>gi|356546104|ref|XP_003541471.1| PREDICTED: dicer-like protein 4-like [Glycine max]
          Length = 1636

 Score =  627 bits (1617), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 462/1422 (32%), Positives = 698/1422 (49%), Gaps = 162/1422 (11%)

Query: 45   IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
            I R YQL++ + A   N I  L TG GKT IAV+L+ ++   I+    K + +FLAPTV 
Sbjct: 48   IARRYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGDLIRKPQ-KNICVFLAPTVA 106

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LVHQQ  VI   TDF+V  Y G+    +   Q W++E+ + +VLVMTPQIL   L   F+
Sbjct: 107  LVHQQAKVIADSTDFKVGTYCGSSKRLK-HHQDWEQEMGQYEVLVMTPQILHHNLSHCFI 165

Query: 165  SLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAMD 221
            +++++  ++ DECHHA    NH Y  IMK FY  +  K P++FGMTASPVV KG SS  +
Sbjct: 166  TMEMIALLIFDECHHAQVKSNHAYAVIMKVFYKSNSTKVPRIFGMTASPVVGKGASSEAN 225

Query: 222  CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281
                I+ LE  LD++V+++EDK E++ FV +   +   Y  +    + L  K+E    + 
Sbjct: 226  LAKSINSLEHILDAKVYSVEDK-ELQSFVTTPVINIYHYVSTASGETSLHLKIEEIKRQC 284

Query: 282  DASLSKLQGSQLNCYKDMDDKHKTL--RKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339
             A+L +           ++D  K +  +K L+  H  +++ L  LG+  A +A  I L  
Sbjct: 285  IATLGR----------SIEDHQKRMNTKKLLNRMHDNVIFGLQNLGIWGALQASHILLSG 334

Query: 340  VLKAQEE-CEIYRQSSLQ--CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS 396
                + E  E    SS    C  +L +   +  S   +     L F     + +   + S
Sbjct: 335  DHSERHELVEADGNSSDDSLCDKYLAQAAELFTSQCMIG---ILTFDLSSVEILKEPFFS 391

Query: 397  TKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVD 456
             KL  L+ +  +F     + CIIFV RI+ A+ +   ++K+  L      +L G    + 
Sbjct: 392  AKLLRLIGILSNFRLQKNMKCIIFVNRIVTARSLSYILQKLKLLRQWRSDFLVGVHAGLK 451

Query: 457  ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516
            +++ K    +++ FR G++NLL AT V EEG+ +  C  VIRFDLP+TV+S+IQSRGRAR
Sbjct: 452  SMSRKTMNIIVDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRAR 511

Query: 517  QHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVES 576
               S++  +++ GN K+ + +      E  +      R  +  ++      + + + ++S
Sbjct: 512  MPQSEYAFLVDSGNKKEIDVIDGFKEDEYRMNMEVTFRTSKETYIIP----EERIFRIDS 567

Query: 577  TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGP 636
            +GASV++  S++L+H+YC  LP D+Y+ PKP F Y        C +TLPSNAP   I+G 
Sbjct: 568  SGASVSSGYSISLLHQYCSKLPHDEYFDPKPSFHYLDDSGGISCHITLPSNAPINQILGT 627

Query: 637  TSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKE 696
               +   SK+  CL+A E+L+ +GAL+D LLP  ++      +S  ++    +    R +
Sbjct: 628  PQLSMEASKREACLKAIEELYNLGALSDCLLPKQDDAEPEVQVSGSSDE-DESDAISRGK 686

Query: 697  LHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELE 755
            LH      A    W  E   V L++Y   F       +Y  F L + + L  +    EL+
Sbjct: 687  LHEMLVPSAFGQSWINEDNIVRLNSYYIKFCPYPEDRVYKEFGLFMMTCLPMEAEKLELD 746

Query: 756  LYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFF-LK 813
            L+L   ++V       G V  + D++  A+ FQE+F   +  +L   S      EF  L 
Sbjct: 747  LHLAHGRSVMTMFVPFGVVEFNKDEIKMAENFQEMFLKIILDRLEFIS------EFVDLG 800

Query: 814  RETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNN 873
                S    S  YLLLP+ ++  +G+ +  ++W  +  C                     
Sbjct: 801  MSAESHSGTSTFYLLLPV-VLQEYGN-AMEVDWKIVKRCL-------------------- 838

Query: 874  GGNSSPCRTSPCKTGCHGKDV------IHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIV 927
                SP    P  T    K V      + LANG    +N+++ +V A H    Y +  + 
Sbjct: 839  ---CSPIFRHPADT--MDKKVFPLDIHLQLANGYRSVRNVENSLVYAPHKKNFYFVTNVN 893

Query: 928  NNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGG 987
               +  SP   + D  + ++V+YF EK+ I L  P QPLL +K   N HNLL N      
Sbjct: 894  YEKNGYSP---HNDSGTSSYVDYFIEKFSIHLKCPKQPLLHVKPVSNLHNLLHN------ 944

Query: 988  SGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
              +  +     +  +  +++PPEL  L  +     +  S+ LLPS+M RL +L++A +L+
Sbjct: 945  --RKREDAEPQELDEYLIYLPPELCELKVIGFSKDIGSSISLLPSIMHRLGNLLVAIELK 1002

Query: 1046 EEINCHSRNF----HIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYP 1101
              +   S +F     I +  +LEALTT  C E FS+ERLE+LGD+ LK+AV+ H FL + 
Sbjct: 1003 HML---SSSFPEAAEISAIRVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHD 1059

Query: 1102 KKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGV 1161
              HEG L+ RRS AV NS L KL   R LQ YI D  FDP ++ A G    RP P  C  
Sbjct: 1060 SLHEGDLTKRRSNAVNNSNLFKLAIKRNLQVYICDQTFDPTQFYALG----RPCPRVCSN 1115

Query: 1162 DTLEVPLDGKFFTQDTKVVVGKP----CDMGHRWMGSKTIADCAEALIGAYYVGGGLIAA 1217
            +T E       F  ++ +  GK     C   H W+  KTIAD  EAL+GA+ V  G  AA
Sbjct: 1116 ETEE----SIHFCLNSVMQQGKATETRCSKNHHWLHRKTIADVVEALVGAFLVDSGFKAA 1171

Query: 1218 LYMMKWLGIDADLEVS-LVDDCITRASLRSYVPRINE--IKDIESKIGYEFTVKFLLQEA 1274
            +  + W+GI  D E S +VD CI  A   SY P  +E  I  +E K+G+ F  K LL +A
Sbjct: 1172 IAFLSWIGIQVDFEASQVVDICIASA---SYSPLSSEVDIPSLEGKLGHHFFHKGLLLQA 1228

Query: 1275 ITHASVQEF--YCYQNL------------------------------------------- 1289
              H S  +    CYQ L                                           
Sbjct: 1229 FVHPSYNKLGGGCYQRLEFLGDAVLDYLITSYLFSAYPKLKPGQLTDLRSLSVNNKAFAC 1288

Query: 1290 ------YKHLQHCSTLLLSQ-ITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVL 1342
                  + +   C +  LS+ I +YV    +P          K PKALGDL+ES VGA+L
Sbjct: 1289 LAVDRSFDNFLLCDSSGLSEAIKKYVDYVRRPVSDNGIKEGPKCPKALGDLVESCVGAIL 1348

Query: 1343 IDTKLNLDEVWRIFKPILSPIVT-PDKLELPPLRELIELCDS 1383
            +D+  NL++VW+I    L PI+     L+L P+R+L ELC S
Sbjct: 1349 LDSGFNLNKVWKIMTSFLDPIMKFSSSLQLSPVRDLRELCQS 1390


>gi|379987682|gb|AFD22621.1| dicer-like 4 protein [Nicotiana attenuata]
          Length = 1622

 Score =  627 bits (1616), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 514/1672 (30%), Positives = 778/1672 (46%), Gaps = 223/1672 (13%)

Query: 45   IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
            I R YQ+ + + A   N +  L TG GKT IAV+LI ++ Q I+    K + +FLAPTV 
Sbjct: 50   IARKYQMDLCKKALEENVVVYLGTGCGKTHIAVLLIYEMGQLIRKPQ-KSICVFLAPTVA 108

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LV QQ  VI    DF+V  Y G K       + W+KE+ + +VLVMTPQILL  L   ++
Sbjct: 109  LVQQQAKVIEDSIDFKVGTYCG-KSKHLKSHEDWEKEMEQYEVLVMTPQILLHNLSHCYI 167

Query: 165  SLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAMD 221
             ++ +  ++ DECH+A    +HPY +IMK FY     K P++FGMTASP+  KG +    
Sbjct: 168  RIEFIALLIFDECHYAQVESDHPYAEIMKIFYKPDVVKLPRIFGMTASPISGKGAT---- 223

Query: 222  CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281
                +  LE+ L S+V+++EDK E+E FV S K +  +Y     C       L  ++S+ 
Sbjct: 224  ----VEGLETLLRSKVYSVEDKDELEQFVASPKVNVYYYGPGTAC-------LTKAYSQ- 271

Query: 282  DASLSKLQGSQLNCYKDMDDK---HKTLR---KQLSDYHAKILYCLDELGLICAYEAVKI 335
                 KL+  +  C   +  K   H TLR   K L   H  +++ L+ LG+  A +A  I
Sbjct: 272  -----KLEEIKHQCVMVLHKKAVDHSTLRNTKKMLKRLHGHLIFSLENLGVFGALQASCI 326

Query: 336  CLEKVLKAQE---ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDL 392
             L+     +    E ++       C  +L +V  V  S      K  ++      + +  
Sbjct: 327  LLKGDHYERHQMVEADVNASDDSLCDRYLSQVATVFTSGCA---KDGMNPDLTRVEVLKE 383

Query: 393  GYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGST 452
             Y S KL  L+ +  +FG    + CIIFV RI+ A+ +   ++ +  L+     +L G  
Sbjct: 384  PYFSKKLLRLIGILSNFGVQPDMKCIIFVNRIVTARSLSYMLQHLKVLSSWKCGFLVGVH 443

Query: 453  TSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
            + + +++ K    +L  FR G++NLL AT V EEG+ +  C  VIRFDLP+TV+S+IQSR
Sbjct: 444  SGLKSMSRKNTNIILNKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSR 503

Query: 513  GRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYV---KT 569
            GRAR   S++  +++  N ++ N +    R+E  + D   SR       K+CT V   + 
Sbjct: 504  GRARMPKSEYAFLVDSDNQRELNLIEHFSRNEARMNDEISSR-------KSCTAVIDFQE 556

Query: 570  KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAP 629
              Y V+ TGA++++ SS++L+H YC  LP D+++ PKP F Y    +   C+L LPSNAP
Sbjct: 557  NIYKVDMTGATISSASSISLLHHYCSKLPRDEFFCPKPQFFYFDDIDGTICKLVLPSNAP 616

Query: 630  FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGA 689
               IV     +   +K+  CL AC+ LH++GAL D+LLP   + ++ +LI          
Sbjct: 617  MHQIVSAPQSSIEAAKKDACLRACKSLHELGALTDYLLP---DQADEDLIHVFLTQKAQM 673

Query: 690  GTTKRKELHGTTPIRALSGRWGE-KCGVILHAYKFNFACSIVTEIYSGFVLLIESELDND 748
                R+ELH      A    W E +  V L++Y  NF+   +  +Y  F L +++ L  +
Sbjct: 674  DEDAREELHEMIVPAAFKESWTETESPVCLNSYYINFSPCPIDRVYKKFGLFLKAPLPQE 733

Query: 749  VGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGS 807
                +L+L L   ++V+  +  SG  + + +++  A+ FQ +F         +  +S   
Sbjct: 734  AERMKLDLNLARGRSVETELIPSGATNFENNEVQLAEKFQRMFLK------IILDRSEXI 787

Query: 808  REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGA 867
             EF    + + + S S  YLLLP   VN  G     ++W  +  C S   F   K + G 
Sbjct: 788  SEFVSLEKEDYVDSASKSYLLLP---VNLCGHNKISVDWELVRRCLSSPIF-GTKVYAGN 843

Query: 868  AQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIV 927
            ++ +                     + + LANGS    ++ + +V        + I ++V
Sbjct: 844  SEISK------------------FDEQLQLANGSKSVHDVANSLVYVPCKETFFFISDVV 885

Query: 928  NNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGG 987
              S+A S +      DSK  V ++ + +GI L +P QPL++ KQ     NLL        
Sbjct: 886  KESNAYSIY-----KDSKNHVEHYYDTFGIRLSYPEQPLIKAKQLFCLDNLL-------- 932

Query: 988  SGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
              K   S +  K+    V +P E+  L  +     +  SL LLPS+M RLESL++A +L+
Sbjct: 933  -RKKGYSELRDKEEHF-VELPAEICQLKIIGFSKDIGSSLSLLPSIMHRLESLLVAIELK 990

Query: 1046 EEINCHSRNF----HIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYP 1101
                C S +F     +    +LEALTT  C E FS+ERLE+LGD+ LK+AV  H+FLTY 
Sbjct: 991  ---GCLSASFPEGREVTIDHVLEALTTEKCNEPFSLERLEVLGDAFLKFAVGRHVFLTYN 1047

Query: 1102 KKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGV 1161
               EGQL+ RRS  V NS L+ +     LQ +IRD +FDP  + A G    RP P  C  
Sbjct: 1048 AFDEGQLTRRRSNIVNNSYLYTIAVRNNLQAFIRDQSFDPYHFYAVG----RPCPVICNK 1103

Query: 1162 DTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMM 1221
             T E  + G+  +          C   H+W+  KTIAD  EAL+GA+ V  G  AA+  +
Sbjct: 1104 QT-EKSIHGQCGSVTDGAKTEVRCSKCHQWLRKKTIADIVEALVGAFVVDSGFKAAIAFL 1162

Query: 1222 KWLGIDADLEVSLVDDCITRASLRSYVPRINE--IKDIESKIGYEFTVKFLLQEAITHAS 1279
            KW+GI  D E S V      A+ + ++P  +E  I+ IE+ +GY F  K LL +A  H S
Sbjct: 1163 KWIGIYTDFEESQVKSIC--AASKVFMPLADEIDIQAIENLLGYTFVHKGLLIQAFIHPS 1220

Query: 1280 VQEF--YCYQNL------------------------------------------------ 1289
                   CYQ L                                                
Sbjct: 1221 YNNHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSVSVNNTTFAVVAVHQ 1280

Query: 1290 --YKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKL 1347
              + H+   S+ L   IT YV    +P            PKALGDL+ES +GA+L+DT  
Sbjct: 1281 SFHSHILCDSSGLRESITRYVNFIGRPDSMKRLSEEPSCPKALGDLVESCMGAILLDTGF 1340

Query: 1348 NLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQL 1407
            +L+  WRI    L P+++  +L+L P REL ELC S G+ +K   + K      E ++  
Sbjct: 1341 DLNXAWRIMLSFLKPVMSFTRLQLNPKRELHELCQSYGWHLKFLASKKDSKYLVEAKVNG 1400

Query: 1408 KDVLLVGEGQERSRKAAKGKAASQLLKKLEV-CEKRISKGASNTGK---------LGDD- 1456
            ++V         ++KAA   AA Q+   L+    +R SK      K         +G D 
Sbjct: 1401 ENVSEAASALNINKKAAARMAAQQVHSSLKAQGYRRKSKSLEQVVKTAKKMEAKLIGYDE 1460

Query: 1457 --CRQTTKEDLPEPPSCKRQKGTEAAIPAGD----SC--KKAYCMTVGTPVVAPINMKK- 1507
              C  T K +  E              P  +    +C  K   C  VG       N ++ 
Sbjct: 1461 IPCVLTAKCNDVEKNEASESDRDLKVFPISEELARNCNFKLKACEKVGPKAAVQCNSEQT 1520

Query: 1508 ------------------GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRT 1549
                              G  ++ L ++C    W  P FE                 K T
Sbjct: 1521 IMPNGSNSDSKATGGAINGSAKSILHEVCAANCWKPPRFECC---------------KET 1565

Query: 1550 G---FSSFVSKITLHIPEFGNV-ECNGDPRADKKSSFDSAALIMLHELERQG 1597
            G      F  ++ + I E   V E  G PRA KK + + AA   L  L+ +G
Sbjct: 1566 GPSHLKEFTFRVVVEIEETSRVIESCGAPRAKKKDAAEDAAEGALWFLKHEG 1617


>gi|357167959|ref|XP_003581414.1| PREDICTED: endoribonuclease Dicer homolog 4-like [Brachypodium
            distachyon]
          Length = 1627

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 473/1473 (32%), Positives = 712/1473 (48%), Gaps = 158/1473 (10%)

Query: 45   IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
            I R YQL + + A   N +  L TG GKT IAV+LI ++   I+      + IFLAPT+ 
Sbjct: 20   IARKYQLDLCKRAVEENIVVYLGTGCGKTHIAVLLIYELGHLIRKPS-SDVCIFLAPTIP 78

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LV QQ  VI   T+F+V+ YYG  G    D Q W+KE+ +++VLVMTPQILL  LR  F+
Sbjct: 79   LVRQQAAVISNSTNFKVQSYYG-NGKSSRDHQDWEKEMRESEVLVMTPQILLYNLRHCFI 137

Query: 165  SLDIVCFIVIDECHHATGN--HPYTKIMKEFYHKSDNKP-KVFGMTASPVVRKGVSSAMD 221
             +  +  ++ DECHHA  +  HPY +IMKEFY  +  KP +VFGMTASPV+ KG S+ ++
Sbjct: 138  RMSSIALLIFDECHHAQAHKRHPYAQIMKEFYDSNAVKPPRVFGMTASPVMGKGGSNKLN 197

Query: 222  CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKF-CGSDLKGKLEVSWSK 280
                I+ LE  L ++V ++ D  E+E  +        F D   +  G      L V++ K
Sbjct: 198  YTKCINSLEELLHAKVCSV-DNVELESVIA-------FPDMEVYPYGPVSHSNLTVTYIK 249

Query: 281  FDASLSKLQGSQL--NCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338
                L KLQ   +      D  D  K L K L   H  +++CL ELG   A +A +  L 
Sbjct: 250  ELDDL-KLQSECIVRESLYDFKDSQKKL-KSLWRLHGNLIFCLQELGSFGALQAARNLLS 307

Query: 339  KVLKA--QEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDL---G 393
              + A  ++E +I   S+    ++L + + V+   +       LD   D S  +++    
Sbjct: 308  FDVDAFDKKEVDINGNSTRFMHHYLNKAVSVLSCNI-------LDGTHDDSFDLEMLEEP 360

Query: 394  YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT 453
              S K   L+ +   +     + CIIFV+RI  A+ +   ++ +  L      +L G  +
Sbjct: 361  LFSNKFAVLINVLSRYRLEENMKCIIFVKRIAVARAISHIIRNLKCLDFWKCEFLVGCHS 420

Query: 454  SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
             +  ++     +++E F  G+VNLL AT V EEG+ +  C  V+RFDLP+TV+S+IQSRG
Sbjct: 421  GLKNMSRNKMDDIVEKFSSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRG 480

Query: 514  RARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYI 573
            RAR   S+++++LERGN  Q   L + I  E  + +   SR     F     Y++  +Y 
Sbjct: 481  RARMTISKYVVLLERGNQSQEKLLNNYIAGESIMNEEIDSRTSNDMF----DYLEENTYR 536

Query: 574  VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTI 633
            V  TGAS++T  SV+L+HRYC  LPSD ++ P P F Y    E   C + LP NA F+ +
Sbjct: 537  VNHTGASISTACSVSLLHRYCYNLPSDMFFNPSPAFFYIDDTEGIICRVILPPNAAFRQM 596

Query: 634  VGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTK 693
             G   ++K+ +K+  CL+AC K H++GAL D LLP     S  N  S  N    G+ + K
Sbjct: 597  DGQPCQSKDEAKRDACLKACMKFHELGALTDFLLPG--PGSRKNKASSPN----GSASNK 650

Query: 694  ------RKELHGT-TPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELD 746
                  R+ELH    P      R  + C + LH Y F F        Y  F L + + L 
Sbjct: 651  EEDDSLREELHEMLIPSVLKPSRCKQDCLLDLHFYYFKFFPIPADRHYQMFGLFVINPLP 710

Query: 747  NDVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSS 805
             +    E++L+L   + VK  +   G +  D +QM  A+ FQE+F      K+ +     
Sbjct: 711  EEAEKLEVDLHLARGRIVKTGIKHLGTMVFDKEQMILARNFQEMFL-----KILLDRSEF 765

Query: 806  GSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFL 865
             S +  L  + ++L   S  YLLLP++     GD  + I+W  +  C             
Sbjct: 766  TSSDVILCND-DTLEISSTFYLLLPIK-QKCCGD-IFVIDWPTVVRCL------------ 810

Query: 866  GAAQCNNNGGNSSPCRTSPCKTGCHG----KDVIHLANGSVDAKNLKDMVVLAIHTGRIY 921
                       SSP    P     HG     + + L +      ++   ++   H    +
Sbjct: 811  -----------SSPVFRDPVDVSVHGSYIPNESLRLLDEVYSRTDVVGSLIFVPHNNTFF 859

Query: 922  SIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVN 981
             I  I++  +  S F+G       T+  ++ E++GI L HP QPLL+ KQ  N HNLL +
Sbjct: 860  IIDVILDKLNGRSEFNG------ATYEEHYRERFGIELSHPEQPLLKAKQLFNLHNLLHD 913

Query: 982  FNDGGGSGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLM 1039
                    +GS+        +  V +PPEL  L        +  SL LLPS+M RLE+ +
Sbjct: 914  RLRETTDSRGSEL------VEHFVELPPELCSLKITGFSKDMSSSLSLLPSLMCRLENFL 967

Query: 1040 LASQLRE-EINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFL 1098
            +A +L++  ++       I +S ILEA+TT  C E  S+ER E+LGD+ LKY V  H F+
Sbjct: 968  VAIELKDLMLSSFPEASQISASAILEAITTERCLERISLERFEVLGDAFLKYVVGRHNFM 1027

Query: 1099 TYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCE 1158
            +Y    EGQL+ RRS  V NS LH+L   R LQ YIRD  F+P ++ A G    RP    
Sbjct: 1028 SYEGLDEGQLTRRRSDIVNNSNLHELSVKRNLQVYIRDQQFEPTQFFALG----RPCKVV 1083

Query: 1159 CGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAAL 1218
            C  D +EV +  K    D        C   H W+  KTIAD  E+L+GA+ V GG  AA 
Sbjct: 1084 CHAD-MEVSIHQKNIDPDRPENCNVRCTKSHHWLHKKTIADVVESLLGAFLVEGGFKAAF 1142

Query: 1219 YMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHA 1278
              + W+GID D E S +   +  +S+   +  +  + ++E  IGY+F  K L+ EA  H 
Sbjct: 1143 AFLHWVGIDVDFEDSALYRVLNASSINLSLMNLINVAELEELIGYKFKHKGLIIEAFVHP 1202

Query: 1279 SVQEFY--CYQNL------------------------------------------YKHLQ 1294
            S  +    CYQ L                                          Y  +Q
Sbjct: 1203 SFNKHSGGCYQKLEFLGDAVLEYLMTSYLYSAYPDLKPGEITDLKSLAVCNDSFAYVAIQ 1262

Query: 1295 HC--------STLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTK 1346
             C        S  L   ++++      P    D       PK LGD++ES V AVL+D+ 
Sbjct: 1263 KCIHKYIIKDSNHLTKAVSKFENYIKLPNSEKDLVEEPACPKVLGDIVESCVAAVLLDSG 1322

Query: 1347 LNLDEVWRIFKPILSPIVTPDKLELPPLRELIEL--CDSLGYFVKENCTLKGEMVHAELR 1404
             NL+ VW++   +L P+++   + + P+RE+ EL  C+ L   + +     GE  H ++ 
Sbjct: 1323 FNLNYVWKLVLMLLKPVLSFSGMHMNPMREIRELCQCNELELGLPKPMKADGEY-HVKVE 1381

Query: 1405 LQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
            + +   ++      R+ K A+  AA + L KL+
Sbjct: 1382 VNINSTMISCTAANRNSKVARKLAARETLSKLK 1414


>gi|379987680|gb|AFD22620.1| dicer-like 3 protein, partial [Nicotiana attenuata]
          Length = 596

 Score =  624 bits (1609), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 336/600 (56%), Positives = 408/600 (68%), Gaps = 69/600 (11%)

Query: 1068 TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTD 1127
            +L C ESFSMERLELLGDSVLKYAVSCHLFL YPKKHEGQLS +RSWAV NSTLHK+GT 
Sbjct: 1    SLRCNESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSDQRSWAVSNSTLHKVGTS 60

Query: 1128 RKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM 1187
            R LQGYIRD AFDPRRW APGQLSLR  PC+ GV+T EVPLD KF T+D KVVVGK CD 
Sbjct: 61   RHLQGYIRDGAFDPRRWTAPGQLSLRLCPCDHGVETSEVPLDKKFLTEDPKVVVGKHCDR 120

Query: 1188 GHRWMGSKT-IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRS 1246
            GHRWMGSKT I+DC EALIGAYYVGGG IAAL +MKWLG++A+LE SLV+D I  A L S
Sbjct: 121  GHRWMGSKTIISDCVEALIGAYYVGGGFIAALKLMKWLGVEAELEPSLVEDAIKTAFLYS 180

Query: 1247 YVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE-----------------------F 1283
            Y P+  +I+D+E K+ Y+F+VK LL EAITHA+V E                       +
Sbjct: 181  YTPKAKDIEDLELKLSYKFSVKGLLLEAITHATVLEVDVSYNYQRLEFLGDSVLDILITW 240

Query: 1284 YCYQN------------------------------LYKHLQHCSTLLLSQITEYVKSFPK 1313
            Y YQ                               L+ HLQH S  L S+I+ +VK    
Sbjct: 241  YLYQKHKDIDPGELTDLRSASVNNDNFAYAAVKRELHVHLQHHSGYLESEISAFVKLV-- 298

Query: 1314 PGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPP 1373
                + S    KAPK LGDL+ESI GA+L+DTKLNLDEVW+I KP+LSPIVTPDKLELPP
Sbjct: 299  --SDSCSLQGNKAPKVLGDLVESIAGAILVDTKLNLDEVWKIVKPLLSPIVTPDKLELPP 356

Query: 1374 LRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLL 1433
            LRELIELCDSLGYF+K++C +KG+ VHAELRLQLKD LLV EG  ++RK AKG+AA +LL
Sbjct: 357  LRELIELCDSLGYFLKDHCMVKGDTVHAELRLQLKDELLVAEGCGQTRKNAKGQAALKLL 416

Query: 1434 KKLE---VCEKRISKGAS------NTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAG 1484
            K LE   +  K+  +  S      + G  GD C Q      P    CK+QK   + +   
Sbjct: 417  KDLEHKGISSKKKKQETSLVDVPYSLGTDGDICSQANNT-CPAMAPCKKQKTILSNLETA 475

Query: 1485 DSCKKAYCMT-VGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCE 1543
             +   + C +      + PINMKKGGPR SL++LCK + WPMP+ E+TE KS++L    E
Sbjct: 476  KAQPSSACNSNKDIQAIGPINMKKGGPRQSLYELCKKLQWPMPSLESTERKSKSLTECGE 535

Query: 1544 GLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIIISS 1603
            G +KR  +++F S+I+L IP++G +E  GD RADKKSS DSAAL+ML+ELER+GK+II +
Sbjct: 536  GSDKRKVYNTFASQISLTIPDYGLIELTGDERADKKSSQDSAALLMLYELERRGKVIIGN 595


>gi|297812215|ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319828|gb|EFH50250.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1693

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 495/1665 (29%), Positives = 774/1665 (46%), Gaps = 214/1665 (12%)

Query: 33   DGPSSSTN-SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNG 91
            D PSS        I R YQ+++ + A   N I  L TG GKT IAVM+I ++   + S  
Sbjct: 105  DDPSSKMEKDPRKIARRYQVELCKKAMEENIIVYLGTGCGKTHIAVMVIYELGHLVLSPK 164

Query: 92   FKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMT 151
             K + IFLAPTV LV QQ  VI    +F+V  + G K + +  S+ W++EI++N+VLVMT
Sbjct: 165  -KSVCIFLAPTVALVEQQAKVIADSVNFKVAVHCGGKRIVKSHSE-WEREISENEVLVMT 222

Query: 152  PQILLDALRKAFLSLDIVCFIVIDECHHAT--GNHPYTKIMKEFYH-KSDNKPKVFGMTA 208
            PQILL  L+  F+ ++ +  ++ DECHHA    NHPY +IMK FY  +S  +P++FGMTA
Sbjct: 223  PQILLHNLQHCFIRMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRPRIFGMTA 282

Query: 209  SPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS 268
            SPVV KG   + +    I+ LE+ LD++V+++E   +++ FV S      +Y  +    S
Sbjct: 283  SPVVGKGSFQSENLSKSINSLENLLDAKVYSVESNVQLDGFVSSPIVKVYYYQSAISDAS 342

Query: 269  DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKT-----LRKQLSDYHAKILYCLDE 323
                    S  +++  L  ++   L   K   D H+T     +++ L   H  ++Y L  
Sbjct: 343  Q-------STIRYENMLEDIKQRCLTSIKLQIDTHQTQTLLNMKRLLKKTHDNLIYSLVN 395

Query: 324  LGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
            LGL  A +A KI L      QEE       S  C  +L     V+ S +   +       
Sbjct: 396  LGLWGAIQAAKIQLNS--DVQEEPVGENPKSKICDTYLSLAAEVLSSGVAKDESASELLS 453

Query: 384  FDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL 443
                 A+     S KL +L+++   F     + CIIFV RI+ A+ +   +  +  L   
Sbjct: 454  L---AALKEPLFSRKLVQLIEILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSW 510

Query: 444  TVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK 503
               +L G ++ + +++ +  + +L+ F+  ++NLL AT V EEG+ +  C  VIR+DLP+
Sbjct: 511  KSDFLVGLSSGLKSMSRRGMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPE 570

Query: 504  TVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKA 563
            TV+S+IQSRGRAR   S++  +++ GN K+ + + +   +E  +     SR  E    + 
Sbjct: 571  TVTSFIQSRGRARMPQSEYAFLVDSGNEKEMDLIENFRVNEDRMNQEITSRTSE----ET 626

Query: 564  CTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE--AYECE 621
            C  +  + Y V  TGA ++  SS++L+++YC  LP D+++ PKP F++K   E     C 
Sbjct: 627  CPILDEELYKVHETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVNEFGGTICR 686

Query: 622  LTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISK 681
            +TLP+NAP   IV     +   +K+  CL+A  +LH +G LND LLP  ++  E+ L   
Sbjct: 687  ITLPANAPISEIVSSLLPSTEAAKKDACLKAVYELHNLGVLNDFLLPDSKDEIEDELSDD 746

Query: 682  K--NESLPGAGTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFV 738
            +   +++ G G + R EL+          +W   +  V LH+Y   F        Y  F 
Sbjct: 747  EFDFDNIKGEGCS-RGELYEMVVPVLFKQKWDSSRSCVNLHSYYIRFVPHPADRSYKKFG 805

Query: 739  LLIESELDNDVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLF-- 795
              ++S L  +    +++L+L   ++V   +  SG    D D++  A+ FQE+    LF  
Sbjct: 806  FFMKSPLPIEADTMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEVALKVLFER 865

Query: 796  GKLFVKSKSSGSREFF-LKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCAS 854
            G+L          EF  L+ + +S  S S  YLLLP+ + +   +    ++W  I  C S
Sbjct: 866  GELI--------PEFVPLELQDSSRTSKSTFYLLLPISLHD--AESVISVDWVTIRSCLS 915

Query: 855  VVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLA 914
               F K  S L        G                    ++LANG  +  ++K+ +V  
Sbjct: 916  SPIF-KTPSVLVEDIVPPTGS------------------YLNLANGCWNIDDVKNSLVFM 956

Query: 915  IHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHN 974
             H  + Y + +I    +  SP     +  +K+ +    + YG+ L +PGQPLLR+K   +
Sbjct: 957  THNKQFYFVADICYGRNGFSPV---KESSTKSHMENIYKLYGVELKYPGQPLLRVKPLCH 1013

Query: 975  PHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVM 1032
              NLL N        +  K+    +  +  + +PPEL  L    +   +  SL LLPS+M
Sbjct: 1014 VRNLLHN--------RMQKNLEPQELDEYFIEIPPELSQLKIKGLSKEIGSSLSLLPSIM 1065

Query: 1033 QRLESLMLASQLREEINCHSRNF-HIPSSLILEALTTLGCCESFSMERLELLGDSVLKYA 1091
             R+E+L++A +L+  ++        +    +LEALTT  C E  S+ERLE+LGD+ LK+A
Sbjct: 1066 HRVENLLVAIELKHVMSASIPEIAEVSGHRVLEALTTEKCHERLSLERLEVLGDAFLKFA 1125

Query: 1092 VSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLS 1151
            VS HLFL + +  EG+L+ RRS AV NS L +L   R LQ YIRD A DP ++ A G   
Sbjct: 1126 VSRHLFLHHDRLDEGELTRRRSKAVNNSNLCRLAIKRNLQVYIRDQALDPTQFFAFGH-- 1183

Query: 1152 LRPVPCECGVDTL---------EVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAE 1202
                PC    D +          VP        ++++     C  GH W+  KTIAD  E
Sbjct: 1184 ----PCRVTCDEVTSEEVHSLNRVP---GLLESNSEI----RCSKGHHWLYKKTIADVVE 1232

Query: 1203 ALIGAYYVGGGLIAALYMMKWLGIDADLE-VSLVDDCITRASLRSYVPRI--NEIKDIES 1259
            AL+GA+ V  G   A+  + W+G++ D E + + D CI     R Y+P    N ++ +E+
Sbjct: 1233 ALVGAFLVDSGFKGAVKFLSWIGVNVDFESLQVQDACIAS---RRYMPLTTRNNLEALEN 1289

Query: 1260 KIGYEFTVKFLLQEAITHASVQEF--YCYQNLYKHLQHCSTLLLSQITEYVKSFP--KPG 1315
            ++ Y F  K LL +A  H S       CYQ L       + L     + +   FP  KPG
Sbjct: 1290 QLDYNFLHKGLLVQAFIHPSYNRHGGGCYQRL--EFLGDAVLDYLMTSYFFTVFPKLKPG 1347

Query: 1316 ETTD------------------------------------------------SGPSM--K 1325
            + TD                                                SGPS   +
Sbjct: 1348 QLTDLRSLSVNNKALANVAVSFSLKRFLFCESVYLHEAIEDYTNFRAASPLASGPSEGPR 1407

Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLG 1385
             PK LGDL+ES +GA+ +D   NL+ VW +    L P+     L++ P++ELIELC S  
Sbjct: 1408 CPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYK 1467

Query: 1386 YFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEK---- 1441
            +  + + T K      EL++  K   L      R+++ +  KAA  ++  L+  E+    
Sbjct: 1468 WDREISATKKDGGFSVELKVTKKGCCLTVSATGRNKRESTKKAAQLMITSLKAHEQITTS 1527

Query: 1442 -----RISKGASNTGKL--------------GDDCRQ-TTKEDLPEPPSCKRQKGTEAAI 1481
                  +     N  KL              G D      +E+L E             +
Sbjct: 1528 HPLEDVLKNSNLNEAKLIGYNEDPIDVVNLVGLDVENLKIQENLGENSEISSSYVIRRGL 1587

Query: 1482 PAG-----DSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSR 1536
            P       D   +   +  G P            ++ L + C    W  P FE  E    
Sbjct: 1588 PQAPSKTEDRLPQKTIIEAGRP-------SSKTAKSLLHETCVANCWKPPHFECCEE--- 1637

Query: 1537 TLLVFCEGLEKRTGFSSFVSKITLHIPEFGN--VECNGDPRADKK 1579
                     E      SF  K+ L + +  N  +EC G+ RA KK
Sbjct: 1638 ---------EGPGHLKSFFYKVILEVEDAPNMTLECYGEARATKK 1673


>gi|296084589|emb|CBI25610.3| unnamed protein product [Vitis vinifera]
          Length = 1623

 Score =  616 bits (1589), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 503/1668 (30%), Positives = 779/1668 (46%), Gaps = 200/1668 (11%)

Query: 45   IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
            I R YQL++ + A   N I  + TG GKT IAV+LI  +   I+    K + +FLAPTV 
Sbjct: 46   IARGYQLELCKKALEENIIVYMGTGCGKTHIAVLLIHALGHLIRKPQ-KNICVFLAPTVA 104

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LV QQ  VI    DF+V  Y G           W+KE  + +V VMTPQILL  L   F+
Sbjct: 105  LVQQQARVIEESIDFKVGTYCGNSRRLRTHHD-WEKEFEQYEVFVMTPQILLRGLYHCFI 163

Query: 165  SLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAMD 221
             ++++  ++ DECHHA    NHPY +IMK FY  S  + P++FGMTASPVV KG S   +
Sbjct: 164  RMELIALLIFDECHHAQVQSNHPYAEIMKVFYKTSSTRLPRIFGMTASPVVGKGASDQAN 223

Query: 222  CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281
                I+ LE+ L ++V+++E++ E+E FV S K +   Y       S    KLE   S+ 
Sbjct: 224  LPKCINSLENLLHAKVYSVENQQELERFVASPKINVYCYHPDINMTSSTCKKLEEIKSQC 283

Query: 282  DASLSKLQGSQLNCYKDMDDKHKTLR---KQLSDYHAKILYCLDELGLICAYEAVKICLE 338
              SL +          +++D HK+LR   K L   H  +++ ++ LGL  A +A +I L 
Sbjct: 284  VLSLRR----------NVED-HKSLRSTKKLLQRMHDNLIFSMENLGLWGALQASRILLS 332

Query: 339  KVLKAQEE---CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
                 + E    E        C  +L++  +V+ S   + D I  D    Y   +   + 
Sbjct: 333  GDHAERNELMEAEGSASDDRLCDKYLDQSANVLASEC-IQDGIGSDIS--YVDVLKEPFF 389

Query: 396  STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
            S KL  L+ +  +F +   + CIIFV RI+ A+ +   ++ + FL++    +L G  + +
Sbjct: 390  SRKLLRLIGILSTFRRQPNMKCIIFVNRIVTARSLAYILQNLKFLSYWKCDFLVGVHSGL 449

Query: 456  DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
             +++ K    +L+ FR  ++NLL AT V EEG+ +  C  VIRFDLP+TV+S+IQSRGRA
Sbjct: 450  KSMSRKTMNIILDKFRSNELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 509

Query: 516  RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVE 575
            R   S++  +++ G  K+ + +    + E  +      R     F    T ++ + Y V+
Sbjct: 510  RMPQSEYAFLVDSGKQKEIDLIEHFKKDEDRMNMEISVRTSSEAF----TDLEERIYKVD 565

Query: 576  STGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVG 635
            S+GAS+++  S++L+H+YC  L  D+Y+ PKP F Y        C++ LPS+AP   IV 
Sbjct: 566  SSGASISSVYSISLLHQYCSKLLHDEYFNPKPEFYYFDDSGGTVCQINLPSSAPIHQIVS 625

Query: 636  PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRK 695
                +   +K+  CL+A + LH +GALND+LLP      E  ++   +     A    R+
Sbjct: 626  TPQSSMEAAKKDACLKAIQDLHVLGALNDYLLPDQGNAHEELMLVSSDSDSCEADEDSRE 685

Query: 696  ELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELE 755
            ELH      AL   W     + L++Y   F       IY  F L +++ L  +     L+
Sbjct: 686  ELHEMLVPAALKDSWSNLEHICLNSYYIKFTPIPEDRIYRKFGLFVKAPLPAEAERMVLD 745

Query: 756  LYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGK-LFVKSKSSGSREFFLK 813
            L+L   ++V   +  SG    D +++ +A  FQE++   +  + +F        +  F K
Sbjct: 746  LHLSHGRSVMTELVPSGVTEFDENEILQAHNFQEMYLQVILNRSIFETEIVHLGKSDFCK 805

Query: 814  RETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNN 873
                   S S  YLLLP+ I+N   +    ++W  I  C S   F      +      N 
Sbjct: 806  S------SSSTFYLLLPV-ILNE-CENMITVDWQIIRRCLSSPIFRNPADRVDKLPPLN- 856

Query: 874  GGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAE 933
                               D + LA+G     ++ + +V A +    + +  I    +  
Sbjct: 857  -------------------DHLRLADGVYRESDVINSLVYAPYKKAFFFVSRISAGRNGY 897

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSK 993
            SP+  ++       + Y  + +GI L  P QPLL  K+  +  NLL N   G        
Sbjct: 898  SPYKDSSH------LEYTWKTFGIHLEFPKQPLLSAKRLFSLRNLLHNRKHG-------- 943

Query: 994  SGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCH 1051
            S  + +  +  + +PPEL  L  +     +  S+ LLPS+M RLE+L++A +L+   N  
Sbjct: 944  SSESHELEEHFMDIPPELCHLKIIGFSKDIGSSVSLLPSIMHRLENLLVAIELK---NML 1000

Query: 1052 SRNF----HIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQ 1107
            S +F     I +  +LEALTT  C E FS+ERLE+LGD+ LK+AV   LFL Y    EG+
Sbjct: 1001 SASFPEGAEITAHRVLEALTTEKCLERFSLERLEVLGDAFLKFAVGRRLFLLYDALDEGE 1060

Query: 1108 LSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVP 1167
            L+ RRS  V NS L KL   R LQ YIRD +FDP ++ A G     P  CE   +     
Sbjct: 1061 LTRRRSNVVNNSNLFKLAVRRNLQVYIRDQSFDPGQFFALGHRC--PRICEKETEMAIHS 1118

Query: 1168 LDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGID 1227
              GK  T + +      C   H W+  KTIAD  EAL+GA+ V  G  AA   +KW+GI 
Sbjct: 1119 RCGKTPTTEVR------CSKCHHWLHKKTIADVVEALVGAFIVDSGFKAATVFLKWIGIQ 1172

Query: 1228 ADLEV-SLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF--Y 1284
             D E   +++ CI+  S         ++  +E  +G+EF  K LL +AI H S  +    
Sbjct: 1173 VDFEAFQVINACISSTSYMQLASS-TDVPALEKLLGHEFLHKGLLLQAIVHPSYNKHGGG 1231

Query: 1285 CYQNLYKHLQHCSTLLLSQITEYVKS-FP--KPGETTD---------------------- 1319
            CYQ L + L     +L   IT Y+ S +P  KPG+ TD                      
Sbjct: 1232 CYQRL-EFLG--DAVLDYLITSYLYSVYPKLKPGQMTDLRSLSVNNKSFANVAVSRSLHE 1288

Query: 1320 ------------------------------SGPSMKAPKALGDLLESIVGAVLIDTKLNL 1349
                                           GP  K PKALGDL+ES +GA+L+D   +L
Sbjct: 1289 FLICDASSLSEAIKKYVDFIRTPTLDKDLHEGP--KCPKALGDLVESCMGAILLDKGFDL 1346

Query: 1350 DEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKD 1409
            +  W I   IL  I++   L+L P+REL ELC    + ++   + +G     E ++   D
Sbjct: 1347 NHAWNIMLSILDRIMSFSDLQLNPIRELQELCQHHNWDLQFPTSKQGGTFLVEAKVSGDD 1406

Query: 1410 VLLVGEGQERSRKAAKGKAASQLLKKL---------EVCEKRISKGASNTGKL--GDDCR 1458
            +         +RK A+  A++QL KKL         E  E+ +   +    KL   D+  
Sbjct: 1407 ICTTASATNANRKDARRIASNQLFKKLKDQGYMLHSESLEEVLKSSSKMEAKLIGYDEKP 1466

Query: 1459 QTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPIN-------------- 1504
                 D  E    K Q+ + +         K     V +P + P++              
Sbjct: 1467 IDVAFDSFEFEKLKMQEHSNSDCNRKIQPMKMKPKNVCSPCIKPVSDLPQFQIKASEQQP 1526

Query: 1505 -------MKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSK 1557
                   ++K   +  ++++C    W  P+FE            C   E  +    F  K
Sbjct: 1527 HEIVQGGVQKVSTKARMYEICAANYWKPPSFE------------CCKEEGPSHLKLFTVK 1574

Query: 1558 ITLHIPEFGN--VECNGDPRADKKSSFDSAALIMLHELERQGKIIISS 1603
            +T+ I +     +EC G P++ KK++ DSAA   +  L+++G  + +S
Sbjct: 1575 LTMKIEDGSGLLLECYGYPKSTKKAAADSAAEGAIAYLKQEGYFLPNS 1622


>gi|145358264|ref|NP_197532.3| dicer-like protein 4 [Arabidopsis thaliana]
 gi|322510021|sp|P84634.2|DCL4_ARATH RecName: Full=Dicer-like protein 4
 gi|73672051|gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana]
 gi|332005447|gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana]
          Length = 1702

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 492/1682 (29%), Positives = 775/1682 (46%), Gaps = 270/1682 (16%)

Query: 45   IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
            I R YQ+++ + A   N I  L TG GKT IAVMLI ++   + S   K + IFLAPTV 
Sbjct: 123  IARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPK-KSVCIFLAPTVA 181

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LV QQ  VI    +F+V  + G K + +  S+ W++EI  N+VLVMTPQILL  L+  F+
Sbjct: 182  LVEQQAKVIADSVNFKVAIHCGGKRIVKSHSE-WEREIAANEVLVMTPQILLHNLQHCFI 240

Query: 165  SLDIVCFIVIDECHHAT--GNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMD 221
             ++ +  ++ DECHHA    NHPY +IMK FY  +S  +P++FGMTASPVV KG   + +
Sbjct: 241  KMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRPRIFGMTASPVVGKGSFQSEN 300

Query: 222  CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281
                I+ LE+ L+++V+++E   +++ FV S      +Y  +    S        S  ++
Sbjct: 301  LSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALSDASQ-------STIRY 353

Query: 282  DASLSKLQGSQLNCYKDMDDKHKT-----LRKQLSDYHAKILYCLDELGLICAYEAVKIC 336
            +  L  ++   L   K + D H+T     +++ L   H  ++Y L  LGL  A +A KI 
Sbjct: 354  ENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYTLLNLGLWGAIQAAKIQ 413

Query: 337  LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALP----LADKIFLDFGFDYSKAVDL 392
            L      Q+E       S  C  +L      + S +      +D + L        A+  
Sbjct: 414  LNSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENASDLLSL-------AALKE 466

Query: 393  GYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGST 452
               S KL +L+++   F     + CIIFV RI+ A+ +   +  +  L      +L G +
Sbjct: 467  PLFSRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLS 526

Query: 453  TSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
            + + +++ +  + +L+ F+  ++NLL AT V EEG+ +  C  VIR+DLP+TV+S+IQSR
Sbjct: 527  SGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSR 586

Query: 513  GRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSY 572
            GRAR   S++  +++ GN K+ + + +   +E  +      R  E    + C  +  + Y
Sbjct: 587  GRARMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRSSE----ETCPRLDEELY 642

Query: 573  IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE--AYECELTLPSNAPF 630
             V  TGA ++  SS++L+++YC  LP D+++ PKP F++K  +E     C +TLP+NAP 
Sbjct: 643  KVHETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRITLPANAPI 702

Query: 631  QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKK--NESLPG 688
              I      +   +K+  CL+A  +LH +G LND LLP  ++  E+ L   +   +++ G
Sbjct: 703  SEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDELSDDEFDFDNIKG 762

Query: 689  AGTTKRKELHGTTPIRALSGRWGEKCGVI-LHAYKFNFACSIVTEIYSGFVLLIESELDN 747
             G ++        P+     +W      + LH+Y   F       IY  F   ++S L  
Sbjct: 763  EGCSRGDLYEMRVPV-LFKQKWDPSTSCVNLHSYYIMFVPHPADRIYKKFGFFMKSPLPV 821

Query: 748  DVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLF--GKL---FVK 801
            +    +++L+L   ++V   +  SG    D D++  A+ FQE+    LF  G+L   FV 
Sbjct: 822  EAETMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLFERGELIPDFVP 881

Query: 802  SKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKE 861
                      L+ + +S  S S  YLLLPL + +  G+    ++W  I  C         
Sbjct: 882  ----------LELQDSSRTSKSTFYLLLPLCLHD--GESVISVDWVTIRNCL-------- 921

Query: 862  KSFLGAAQCNNNGGNSSPCRTSPC--------KTGCHGKDVIHLANGSVDAKNLKDMVVL 913
                           SSP   +P          +G H K    LANG  +  ++K+ +V 
Sbjct: 922  ---------------SSPIFKTPSVLVEDIFPPSGSHLK----LANGCWNIDDVKNSLVF 962

Query: 914  AIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSH 973
              ++ + Y + +I +  +  SP     +  +K+ V    + YG+ L HP QPLLR+K   
Sbjct: 963  TTYSKQFYFVADICHGRNGFSPV---KESSTKSHVESIYKLYGVELKHPAQPLLRVKPLC 1019

Query: 974  NPHNLLVNFNDGGGSGKGSKSGMNTK-KPQ----MHVHMPPEL--LVRVDVPISVVKSLY 1026
            +  NLL N              M T  +PQ      + +PPEL  L    +   +  SL 
Sbjct: 1020 HVRNLLHN-------------RMQTNLEPQELDEYFIEIPPELSHLKIKGLSKDIGSSLS 1066

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNF-HIPSSLILEALTTLGCCESFSMERLELLGD 1085
            LLPS+M R+E+L++A +L+  ++        +    +LEALTT  C E  S+ERLE+LGD
Sbjct: 1067 LLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLEALTTEKCHERLSLERLEVLGD 1126

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV 1145
            + LK+AVS HLFL +    EG+L+ RRS  V NS L +L   + LQ YIRD A DP ++ 
Sbjct: 1127 AFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYIRDQALDPTQFF 1186

Query: 1146 APGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP----CDMGHRWMGSKTIADCA 1201
            A G       PC    D +    +     +D  ++        C  GH W+  KTIAD  
Sbjct: 1187 AFGH------PCRVTCDEV-ASKEVHSLNRDLGILESNTGEIRCSKGHHWLYKKTIADVV 1239

Query: 1202 EALIGAYYVGGGLIAALYMMKWLGIDADLE-VSLVDDCITRASLRSYVPRI--NEIKDIE 1258
            EAL+GA+ V  G   A+  +KW+G++ D E + + D CI     R Y+P    N ++ +E
Sbjct: 1240 EALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQDACIAS---RRYLPLTTRNNLETLE 1296

Query: 1259 SKIGYEFTVKFLLQEAITHASVQEF--YCYQNL--------------------------- 1289
            +++ Y+F  K LL +A  H S       CYQ L                           
Sbjct: 1297 NQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQ 1356

Query: 1290 ----------------------YKHLQHCSTLLLSQITEYVKSF--PKPGETTDS-GPSM 1324
                                   K    C ++ L ++ E   +F    P  +  S GP  
Sbjct: 1357 LTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGP-- 1414

Query: 1325 KAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSL 1384
            + PK LGDL+ES +GA+ +D   NL+ VW +    L P+     L++ P++ELIELC S 
Sbjct: 1415 RCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSY 1474

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV------ 1438
             +  + + T K      EL++      L      R+++    KAA  ++  L+       
Sbjct: 1475 KWDREISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMITNLKAHENITT 1534

Query: 1439 ---CEKRISKGASNTGKL----------------------------GDDCRQTT---KED 1464
                E  +  G  N  KL                            G+  R ++   +  
Sbjct: 1535 SHPLEDVLKNGIRNEAKLIGYNEDPIDVVDLVGLDVENLNILETFGGNSERSSSYVIRRG 1594

Query: 1465 LPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGP-----RTSLFQLCK 1519
            LP+ PS    +  + AI                       +K GGP     ++ L + C 
Sbjct: 1595 LPQAPSKTEDRLPQKAI-----------------------IKAGGPSSKTAKSLLHETCV 1631

Query: 1520 TMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGN--VECNGDPRAD 1577
               W  P FE  E             E      SFV K+ L + +  N  +EC G+ RA 
Sbjct: 1632 ANCWKPPHFECCEE------------EGPGHLKSFVYKVILEVEDAPNMTLECYGEARAT 1679

Query: 1578 KK 1579
            KK
Sbjct: 1680 KK 1681


>gi|359484756|ref|XP_002264486.2| PREDICTED: dicer-like protein 4 [Vitis vinifera]
          Length = 1622

 Score =  613 bits (1582), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 505/1669 (30%), Positives = 782/1669 (46%), Gaps = 203/1669 (12%)

Query: 45   IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
            I R YQL++ + A   N I  + TG GKT IAV+LI  +   I+    K + +FLAPTV 
Sbjct: 46   IARGYQLELCKKALEENIIVYMGTGCGKTHIAVLLIHALGHLIRKPQ-KNICVFLAPTVA 104

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LV QQ  VI    DF+V  Y G           W+KE  + +V VMTPQILL  L   F+
Sbjct: 105  LVQQQARVIEESIDFKVGTYCGNSRRLRTHHD-WEKEFEQYEVFVMTPQILLRGLYHCFI 163

Query: 165  SLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAMD 221
             ++++  ++ DECHHA    NHPY +IMK FY  S  + P++FGMTASPVV KG S   +
Sbjct: 164  RMELIALLIFDECHHAQVQSNHPYAEIMKVFYKTSSTRLPRIFGMTASPVVGKGASDQAN 223

Query: 222  CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281
                I+ LE+ L ++V+++E++ E+E FV S K +   Y       S    KLE   S+ 
Sbjct: 224  LPKCINSLENLLHAKVYSVENQQELERFVASPKINVYCYHPDINMTSSTCKKLEEIKSQC 283

Query: 282  DASLSKLQGSQLNCYKDMDDKHKTLR---KQLSDYHAKILYCLDELGLICAYEAVKICLE 338
              SL +          +++D HK+LR   K L   H  +++ ++ LGL  A +A +I L 
Sbjct: 284  VLSLRR----------NVED-HKSLRSTKKLLQRMHDNLIFSMENLGLWGALQASRILLS 332

Query: 339  KVLKAQEE---CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
                 + E    E        C  +L++  +V+ S   + D I  D    Y   +   + 
Sbjct: 333  GDHAERNELMEAEGSASDDRLCDKYLDQSANVLASEC-IQDGIGSDIS--YVDVLKEPFF 389

Query: 396  STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
            S KL  L+ +  +F +   + CIIFV RI+ A+ +   ++ + FL++    +L G  + +
Sbjct: 390  SRKLLRLIGILSTFRRQPNMKCIIFVNRIVTARSLAYILQNLKFLSYWKCDFLVGVHSGL 449

Query: 456  DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
             +++ K    +L+ FR  ++NLL AT V EEG+ +  C  VIRFDLP+TV+S+IQSRGRA
Sbjct: 450  KSMSRKTMNIILDKFRSNELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 509

Query: 516  RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVE 575
            R   S++  +++ G  K+ + +    + E  +      R     F    T ++ + Y V+
Sbjct: 510  RMPQSEYAFLVDSGKQKEIDLIEHFKKDEDRMNMEISVRTSSEAF----TDLEERIYKVD 565

Query: 576  STGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVG 635
            S+GAS+++  S++L+H+YC  L  D+Y+ PKP F Y        C++ LPS+AP   IV 
Sbjct: 566  SSGASISSVYSISLLHQYCSKLLHDEYFNPKPEFYYFDDSGGTVCQINLPSSAPIHQIVS 625

Query: 636  PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSEN-NLISKKNESLPGAGTTKR 694
                +   +K+  CL+A + LH +GALND+LLP      E   L+S  ++S     +  R
Sbjct: 626  TPQSSMEAAKKDACLKAIQDLHVLGALNDYLLPDQGNAHEELMLVSSDSDSCEDEDS--R 683

Query: 695  KELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFEL 754
            +ELH      AL   W     + L++Y   F       IY  F L +++ L  +     L
Sbjct: 684  EELHEMLVPAALKDSWSNLEHICLNSYYIKFTPIPEDRIYRKFGLFVKAPLPAEAERMVL 743

Query: 755  ELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGK-LFVKSKSSGSREFFL 812
            +L+L   ++V   +  SG    D +++ +A  FQE++   +  + +F        +  F 
Sbjct: 744  DLHLSHGRSVMTELVPSGVTEFDENEILQAHNFQEMYLQVILNRSIFETEIVHLGKSDFC 803

Query: 813  KRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNN 872
            K       S S  YLLLP+ I+N   +    ++W  I  C S   F      +      N
Sbjct: 804  KS------SSSTFYLLLPV-ILNE-CENMITVDWQIIRRCLSSPIFRNPADRVDKLPPLN 855

Query: 873  NGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSA 932
                                D + LA+G     ++ + +V A +    + +  I    + 
Sbjct: 856  --------------------DHLRLADGVYRESDVINSLVYAPYKKAFFFVSRISAGRNG 895

Query: 933  ESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGS 992
             SP+  ++       + Y  + +GI L  P QPLL  K+  +  NLL N   G       
Sbjct: 896  YSPYKDSSH------LEYTWKTFGIHLEFPKQPLLSAKRLFSLRNLLHNRKHG------- 942

Query: 993  KSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINC 1050
             S  + +  +  + +PPEL  L  +     +  S+ LLPS+M RLE+L++A +L+   N 
Sbjct: 943  -SSESHELEEHFMDIPPELCHLKIIGFSKDIGSSVSLLPSIMHRLENLLVAIELK---NM 998

Query: 1051 HSRNF----HIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEG 1106
             S +F     I +  +LEALTT  C E FS+ERLE+LGD+ LK+AV   LFL Y    EG
Sbjct: 999  LSASFPEGAEITAHRVLEALTTEKCLERFSLERLEVLGDAFLKFAVGRRLFLLYDALDEG 1058

Query: 1107 QLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEV 1166
            +L+ RRS  V NS L KL   R LQ YIRD +FDP ++ A G     P  CE   +    
Sbjct: 1059 ELTRRRSNVVNNSNLFKLAVRRNLQVYIRDQSFDPGQFFALGHRC--PRICEKETEMAIH 1116

Query: 1167 PLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1226
               GK  T + +      C   H W+  KTIAD  EAL+GA+ V  G  AA   +KW+GI
Sbjct: 1117 SRCGKTPTTEVR------CSKCHHWLHKKTIADVVEALVGAFIVDSGFKAATVFLKWIGI 1170

Query: 1227 DADLEV-SLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF-- 1283
              D E   +++ CI+  S         ++  +E  +G+EF  K LL +AI H S  +   
Sbjct: 1171 QVDFEAFQVINACISSTSYMQLASS-TDVPALEKLLGHEFLHKGLLLQAIVHPSYNKHGG 1229

Query: 1284 YCYQNLYKHLQHCSTLLLSQITEYVKS-FP--KPGETTD--------------------- 1319
             CYQ L + L     +L   IT Y+ S +P  KPG+ TD                     
Sbjct: 1230 GCYQRL-EFLG--DAVLDYLITSYLYSVYPKLKPGQMTDLRSLSVNNKSFANVAVSRSLH 1286

Query: 1320 -------------------------------SGPSMKAPKALGDLLESIVGAVLIDTKLN 1348
                                            GP  K PKALGDL+ES +GA+L+D   +
Sbjct: 1287 EFLICDASSLSEAIKKYVDFIRTPTLDKDLHEGP--KCPKALGDLVESCMGAILLDKGFD 1344

Query: 1349 LDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLK 1408
            L+  W I   IL  I++   L+L P+REL ELC    + ++   + +G     E ++   
Sbjct: 1345 LNHAWNIMLSILDRIMSFSDLQLNPIRELQELCQHHNWDLQFPTSKQGGTFLVEAKVSGD 1404

Query: 1409 DVLLVGEGQERSRKAAKGKAASQLLKKL---------EVCEKRISKGASNTGKL--GDDC 1457
            D+         +RK A+  A++QL KKL         E  E+ +   +    KL   D+ 
Sbjct: 1405 DICTTASATNANRKDARRIASNQLFKKLKDQGYMLHSESLEEVLKSSSKMEAKLIGYDEK 1464

Query: 1458 RQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPIN------------- 1504
                  D  E    K Q+ + +         K     V +P + P++             
Sbjct: 1465 PIDVAFDSFEFEKLKMQEHSNSDCNRKIQPMKMKPKNVCSPCIKPVSDLPQFQIKASEQQ 1524

Query: 1505 --------MKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVS 1556
                    ++K   +  ++++C    W  P+FE            C   E  +    F  
Sbjct: 1525 PHEIVQGGVQKVSTKARMYEICAANYWKPPSFE------------CCKEEGPSHLKLFTV 1572

Query: 1557 KITLHIPEFGN--VECNGDPRADKKSSFDSAALIMLHELERQGKIIISS 1603
            K+T+ I +     +EC G P++ KK++ DSAA   +  L+++G  + +S
Sbjct: 1573 KLTMKIEDGSGLLLECYGYPKSTKKAAADSAAEGAIAYLKQEGYFLPNS 1621


>gi|157279689|dbj|BAF80150.1| SHOOT ORGANIZATION1 [Oryza sativa Japonica Group]
          Length = 1631

 Score =  610 bits (1572), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 476/1483 (32%), Positives = 706/1483 (47%), Gaps = 152/1483 (10%)

Query: 34   GPSSSTN---SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN 90
            GPSS+         I R YQL + + A   N I  L TG GKT IAV+LI ++   I+  
Sbjct: 15   GPSSTRGEPKDPRTIARKYQLDLCKRAVEENIIVYLGTGCGKTHIAVLLIYELGHLIRKP 74

Query: 91   GFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVM 150
              +++ IFLAPT+ LV QQ  VI   TDF+V+ YYG  G +  D Q W+ ++ + +VLVM
Sbjct: 75   S-REVCIFLAPTIPLVRQQAVVIASSTDFKVQCYYG-NGKNSRDHQEWENDMREFEVLVM 132

Query: 151  TPQILLDALRKAFLSLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKS--DNKPKVFGM 206
            TPQILL +LR  F+ ++ +  +++DECHHA     HPY +IMKEFY+ +  +  P+VFGM
Sbjct: 133  TPQILLQSLRHCFIKMNSIALLILDECHHAQPQKRHPYAQIMKEFYNSNSVEKFPRVFGM 192

Query: 207  TASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY------ 260
            TASP++ KG S+ ++    I+ LE  L ++V ++ D  E+E  V S      FY      
Sbjct: 193  TASPIIGKGGSNKLNYTKCINSLEELLHAKVCSV-DNEELESVVASPDMEVYFYGPVNHS 251

Query: 261  DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYC 320
            + +  C  +L      S     ASL            D  D  K L K L   H  I++C
Sbjct: 252  NLTTICIKELDSLKLQSERMLRASLC-----------DFKDSQKKL-KSLWRLHENIIFC 299

Query: 321  LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
            L ELG   A +A +  L       +  E+    S     F    L+   S L        
Sbjct: 300  LQELGSFGALQAARTFLSFDGDKLDRREVDLNGSTSS--FAHHYLNGATSILSRNKTDGS 357

Query: 381  DFG-FDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
              G FD  K ++  + S K   L+ +   +G    + CI+FV+RI  A+ +   ++ +  
Sbjct: 358  HAGSFDLEK-LEEPFFSNKFSVLINVLSRYGLQENMKCIVFVKRITVARAISNILQNLKC 416

Query: 440  LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
            L      +L G  +    ++      +++ F  G+VNLL AT V EEG+ +  C  V+RF
Sbjct: 417  LEFWKCEFLVGCHSGSKNMSRNKMDAIVQRFSSGEVNLLVATSVGEEGLDIQTCCLVVRF 476

Query: 500  DLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC 559
            DLP+TV+S+IQSRGRAR   S+++++LER N      L   I  E  + +   SR     
Sbjct: 477  DLPETVASFIQSRGRARMTKSKYVVLLERENQSHEKLLNGYIAGESIMNEEIDSRTSNDM 536

Query: 560  FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYE 619
            F      ++   Y V++TGAS++T  SV+L+H YC+ LP D ++TP P+F Y    E   
Sbjct: 537  F----DCLEENIYQVDNTGASISTACSVSLLHCYCDNLPRDMFFTPSPVFFYIDGIEGII 592

Query: 620  CELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLI 679
            C L LP NA F+   G    +K+ +K+  CL+AC KLH++GAL D LLP     S  N +
Sbjct: 593  CRLILPPNAAFRQADGQPCLSKDEAKRDACLKACVKLHKLGALTDFLLPG--PGSRKNKV 650

Query: 680  SKKNESLPGA--GTTKRKELHGTTPIRALSGRWGEKCGVI--LHAYKFNFACSIVTEIYS 735
            S  N S        + R+ELH    I A+    G K   +  LH Y   F        Y 
Sbjct: 651  SVTNNSSNNKVEDDSLREELHEML-IPAVLKPSGLKLDSLSNLHFYYVKFIPIPEDRRYQ 709

Query: 736  GFVLLIESELDNDVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGL 794
             F L + + L  +    +++L+L   + VKA +   G++  + ++M  A  FQE+     
Sbjct: 710  MFGLFVINPLPVEAETLQVDLHLARGRIVKAGIKHLGKIAFEKEKMMLAHKFQEMCL--- 766

Query: 795  FGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCAS 854
              K+ +      S    L  +  +L   S  YLLLP++    +GD  + I+W  +  C  
Sbjct: 767  --KILLDRSEFTSPHVKLGNDV-TLEINSTFYLLLPIK-QKCYGD-RFMIDWPAVERCL- 820

Query: 855  VVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHG----KDVIHLANGSVDAKNLKDM 910
                                  SSP    P     H      + + L +G     ++   
Sbjct: 821  ----------------------SSPIFKDPIDVSVHASYSSNESLRLLDGIFSKTDVVGS 858

Query: 911  VVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLK 970
            VV + H    + +  I++  +A S   G       T+  +F E++ I L HP QPLL+ K
Sbjct: 859  VVFSPHNNIFFFVDGILDEINAWSEHSG------ATYAEHFKERFRIELSHPEQPLLKAK 912

Query: 971  QSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLL 1028
            Q  N  NLL N        +G +        +  V +PPEL  L  +     +  SL LL
Sbjct: 913  QIFNLRNLLHNRLPETTESEGREL------LEHFVELPPELCSLKVIGFSKDMGSSLSLL 966

Query: 1029 PSVMQRLESLMLASQLRE-EINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSV 1087
            PS+M RLE+L++A +L++  ++       I +S ILEALTT  C E  S+ER E+LGD+ 
Sbjct: 967  PSLMYRLENLLVAIELKDVMLSSFPEASQISASGILEALTTEKCLERISLERFEVLGDAF 1026

Query: 1088 LKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAP 1147
            LKY V  H F+TY    EGQL+ RRS  V NS L++L   +KLQ YIRD  F+P ++ AP
Sbjct: 1027 LKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQQFEPTQFFAP 1086

Query: 1148 GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGA 1207
            G    RP    C  D +EV L       D +      C   H W+  K IAD  E+LIGA
Sbjct: 1087 G----RPCKVVCNTD-VEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVESLIGA 1141

Query: 1208 YYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTV 1267
            + V GG  AA   + W+GID D     +   +  +S+   +    +I  +E  IGY+F  
Sbjct: 1142 FLVEGGFKAAFAFLHWIGIDVDFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKH 1201

Query: 1268 KFLLQEAITHASVQEFY--CYQNL------------------------------------ 1289
            K LL +A  H S  +    CYQ L                                    
Sbjct: 1202 KGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAV 1261

Query: 1290 --------------YKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLE 1335
                          +KHL   S  L S I+++           D       PKALGD++E
Sbjct: 1262 GNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALGDIVE 1321

Query: 1336 SIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLK 1395
            S +GAVL+D+  NL+ VW++   +L P++T   +   P+REL ELC   G+ +     +K
Sbjct: 1322 SCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMK 1381

Query: 1396 GE-MVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
             +   H ++ + +K  +++     R+ KAA+  AA + L KL+
Sbjct: 1382 ADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLK 1424


>gi|449442659|ref|XP_004139098.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Cucumis sativus]
          Length = 1393

 Score =  609 bits (1571), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 467/1435 (32%), Positives = 697/1435 (48%), Gaps = 203/1435 (14%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI-KSNGFKKLIIFLAPTVHL 105
            R YQL+  E A ++NT+  LETG+GKT+IA+ML++  A  + K + F  + +FL P V L
Sbjct: 21   RSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQLRKPSPF--VAVFLVPQVVL 78

Query: 106  VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            V QQ + +++HTD  V  YYG  GVD WD   W++EI K++VLVMTP ILL+ LR +F  
Sbjct: 79   VTQQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEVLVMTPAILLNGLRHSFFR 138

Query: 166  LDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-----DNKPKVFGMTASPVVRKGVSSAM 220
            L ++  +++DECHHA G HPY  IM EFYH+       + P++FGMTASP+  KG +S +
Sbjct: 139  LSMIKVLILDECHHARGKHPYACIMTEFYHQQLSLGKSDLPRIFGMTASPIKSKGGNSEL 198

Query: 221  DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY---DQSKFCGSDLKGKLEVS 277
            +    I ELES L+S+V+T+  ++E+  FVP +    +FY   D        L   L+V 
Sbjct: 199  NYWQYIQELESLLNSKVYTVSSESELANFVPISTPKFKFYIRKDIPYALYEQLANALKVL 258

Query: 278  WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC- 336
             SK + SL   + S LN         +  RK++S     ++YCLDELGL   ++A +   
Sbjct: 259  KSKHEQSL---ENSDLN-----PSNVEPTRKRISKAFLALMYCLDELGLWLTWKAAESLS 310

Query: 337  -LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
             +E      E  +I+ ++ +  K F  + L ++ + +  +   +   G +    +  G +
Sbjct: 311  WMEDDFSPWETLDIFGEAIV--KSFCSDALKLLANPVK-SGCSYGSIGDNLEADMAAGLM 367

Query: 396  STKLHELLQLFLSFGKSTQVLCIIFVERIIAA-KVVERFVKKVPFLTHLTVAYLTGSTTS 454
            + K+  L+   L +     + CI+FVERI++A  +       +P  T     Y+ GST+ 
Sbjct: 368  TPKVVCLIASLLEYRSIEDIRCIVFVERIVSAVALQTLLSLLLPKYTCWKTKYIAGSTSG 427

Query: 455  VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
            +   + K Q E++E FR GKVN++ AT ++EEG+ V +C+ VIRFD   TV S+IQSRGR
Sbjct: 428  LQTQSKKKQNEIVEEFRCGKVNIIVATSILEEGLDVQSCNLVIRFDPSSTVCSFIQSRGR 487

Query: 515  ARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIV 574
            AR  NS +ILM++ G+    ++L   + S   + + +L      C      Y   +SY V
Sbjct: 488  ARMKNSDYILMVKSGDSTTLSRLQRYLASGEIMRNESLCHASLPCVPFRSDY-DEESYYV 546

Query: 575  ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIV 634
            ESTGA VT  SSV LI+ YC  LPSD Y+ P P +  ++      C L LP ++P QT  
Sbjct: 547  ESTGAVVTLSSSVGLIYFYCSRLPSDCYFKPTPRWDKET------CTLHLPKSSPLQTF- 599

Query: 635  GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKR 694
              +  +   SKQ  CLEAC++LH+ GAL D+L+P +             ES+  A     
Sbjct: 600  -SSKDDAKYSKQRACLEACKQLHKCGALTDNLVPQI----------VAEESV--AQEIGN 646

Query: 695  KELHGTTPIRALSGRWGEKC----GVILHAY----KFNFACSIVTEIYSGFVLLIESELD 746
            K L    PI  +   +   C     V+ H Y    K NF   I        VL + +EL+
Sbjct: 647  KPLDDEQPI-YVPPEFVHCCPHNSSVVYHCYLIELKQNFHYDISAH---NIVLAMRTELE 702

Query: 747  NDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG 806
             +V +   +L +   +        G + L  +Q+  ++ FQ   F  L    +  +K S 
Sbjct: 703  FEVQSMCHDLDVDRGSFDVNFKYVGIIKLSPEQVLLSRQFQRTIFKVLLNHTWT-NKLSE 761

Query: 807  SREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLG 866
            + E  L         P   YLLLP         G   I+W  +             S L 
Sbjct: 762  NNEICLGD------GPRVDYLLLP-------STGGELISWEIV------------LSVLV 796

Query: 867  AAQ--CNNNGGNSSPCRTSPCKTGCHGKDV---IHLANGSVDAKNLKDMVVLAIHTGRIY 921
            ++Q  C + G +SS             KDV   +   +G V    L++ VV   H G +Y
Sbjct: 797  SSQEYCVHRGISSS-------------KDVSYDVPTKSGLVCICRLQNSVVYTPHNGHVY 843

Query: 922  SIVEIVNNSSAESPFDGNT-----DDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPH 976
             I  ++      S  +GN+      ++   +  Y+  ++GI L    QPLLR K+    H
Sbjct: 844  CITSVL------SELNGNSLLKIRKNEMMAYKEYYKVRHGIDLRFEKQPLLRGKKIFPVH 897

Query: 977  NLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLLPSVMQR 1034
            N +  F      G+   S          V +PPEL   +  PISV  + S   LP +M R
Sbjct: 898  NYIKRFRKHKEQGESRNSL---------VELPPELCSIIMSPISVNTLYSYSFLPFIMHR 948

Query: 1035 LESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSC 1094
            LES+++AS L++  + H     IP++ +LEA+TT  C E F++E LE LGDS LKYA   
Sbjct: 949  LESMLIASNLKKLNSDHCMQNDIPTTKVLEAITTKKCQEKFNLESLETLGDSFLKYATGQ 1008

Query: 1095 HLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRP 1154
            HLF T+   HEG L+ ++   V N+ L + G + K+ G+IRD AFDP+ W  PG      
Sbjct: 1009 HLFRTFQNDHEGLLTLKKDRIVSNAALRRRGCEHKISGFIRDEAFDPQNWDIPG------ 1062

Query: 1155 VPCECGVDTLEV-PLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG 1213
                   DT EV  L  +      KV V +      R + SK IAD  EALIGAY   GG
Sbjct: 1063 -------DTHEVYQLREEVLFSGRKVYVQR-----KRKIKSKRIADVVEALIGAYLSTGG 1110

Query: 1214 LIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQE 1273
              AA+  +  +GI+ +      D        R  V ++  +  +ES + Y F  + LL E
Sbjct: 1111 EKAAMQFLNRIGIEVNF-----DFVPYERPFRVDVHKLINVGHLESLLKYTFNDRSLLLE 1165

Query: 1274 AITHASVQ-----------EFY------------------------------------CY 1286
            A+TH S             EF                                     CY
Sbjct: 1166 AMTHGSYMLPEIPRCYQRLEFLGDSVLDYAITVHLYNKYPGMTPELLTDMRSASVSNDCY 1225

Query: 1287 Q------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSG--PSMKAPKALGDLLESIV 1338
                    L+K + HCS  L   I+  V++F         G    +  PK LGD++ES+ 
Sbjct: 1226 SRTALKAQLHKSILHCSHDLHKHISSAVQNFETLSSEATYGWESEISFPKVLGDVIESLA 1285

Query: 1339 GAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCT 1393
            GA+ +D+  + + V+R  +P+L P+V+P+ L+  P REL ELC    Y +K+  T
Sbjct: 1286 GAIYVDSGYDKEIVFRSIRPLLEPLVSPETLKKHPRRELNELCQKENYKLKKTVT 1340


>gi|224109196|ref|XP_002315119.1| dicer-like protein [Populus trichocarpa]
 gi|222864159|gb|EEF01290.1| dicer-like protein [Populus trichocarpa]
          Length = 1408

 Score =  603 bits (1556), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 465/1493 (31%), Positives = 714/1493 (47%), Gaps = 223/1493 (14%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL+  E A ++NTI  LETG+GKT+IA ML++  A  ++    + + +FL P V LV
Sbjct: 23   RSYQLEALEQALKQNTIVFLETGSGKTLIATMLLRSYAHLLRKPS-RFIAVFLVPEVFLV 81

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
             QQ  V+R+HTD  V  Y+G  G+D   +  W++EI+K++VLVMT QILL+ LR+ +  L
Sbjct: 82   RQQAGVVRMHTDLNVGMYWGDMGIDFSHAATWKQEIDKHEVLVMTHQILLNGLRQGYFKL 141

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS-----DNKPKVFGMTASPVVRKGVSSAMD 221
            D +  ++ DECHHA GNHPY  IM EF+H+       + P++FGMTAS +  KG +S   
Sbjct: 142  DFIKVLIFDECHHARGNHPYACIMTEFFHRELRSGHHDLPRIFGMTASLIKSKGANSESY 201

Query: 222  CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS----------DLK 271
               QI ELE+ ++S+V+T   +T +  F+PS      FY+  K              +LK
Sbjct: 202  YRQQICELENIMNSKVYTCASETVLAEFIPSPAAEFLFYEPMKIPDGIYACLEEELGNLK 261

Query: 272  GKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYE 331
             K E+   + D S S  +               ++  ++S  H+ +++C  ELG+  A++
Sbjct: 262  AKHELLLKQLDLSESAAE---------------SVHSKISKVHSALMFCSGELGVWLAFQ 306

Query: 332  AVKIC----LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
            A +       +    A  + ++  ++ +  K F  +   VI +       I    G +  
Sbjct: 307  AARFLSHSDTDSDFIAWGKVDVSGETIV--KKFCWDASLVISNCFSAECCI----GDNTE 360

Query: 388  KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-PFLTHLTVA 446
              V  G I+ K+  L++  L +     + CI+FVER+I A V+E  ++++ P  +     
Sbjct: 361  ADVGAGLITAKVLCLIKTLLQYRDLKDIRCIVFVERVITAVVLESLLRELLPKHSSWKTK 420

Query: 447  YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
            Y+ G+ + + + T ++Q E++E FR G VN++ AT ++EEG+ V +C+ VIRFD P +VS
Sbjct: 421  YIAGNNSGLQSQTRQMQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPPSSVS 480

Query: 507  SYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTY 566
            S+IQSRGRAR  NS ++LM++  +    ++L + + S   +   +L R   +C       
Sbjct: 481  SFIQSRGRARMQNSDYLLMVKTEDSTTHSRLENYLSSSEIMRRESLRRSSTSCSAPQSEL 540

Query: 567  VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPS 626
             + + Y VE TGA VT  SSV+LI+ YC  LPSD Y+ P PI      +E   C L LP 
Sbjct: 541  YEDEFYSVEGTGAVVTLSSSVSLIYFYCSRLPSDGYFKPAPICIIDKEKET--CTLHLPK 598

Query: 627  NAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSV--EEPSENNLISKKNE 684
            ++P Q I      NKNL KQ  CLEAC++LH +GAL D+L+P V  EE     + +++ +
Sbjct: 599  SSPIQNIC-VQGNNKNL-KQKACLEACKQLHLIGALTDNLVPDVVEEEAVAQEIRNERYD 656

Query: 685  S-----LPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVL 739
                  LP        EL    P R L  ++   C +I    KF++   +        VL
Sbjct: 657  DEQPIYLP-------PELASQGP-RNLKTKY--YCYLIELNQKFDYGVPV-----HDIVL 701

Query: 740  LIESELDNDV-GNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKL 798
            ++ +EL++DV  +   EL      +  ++   G ++LD   +   + FQ   F       
Sbjct: 702  VMRTELESDVLSSMGFELEAERGLLAVSLRYIGDIYLDQVPVLLCRRFQITLF------- 754

Query: 799  FVKSKSSGSREFFLKRETNSL----------WSPSYMYLLLPLEIVNTFGDGSWRINWSG 848
                      E  + RE N L                Y LLP   + +    S  I+W  
Sbjct: 755  ----------EVLIHREVNKLEEVLKGLELGTGVVMDYFLLP--AIRSRSQPS--IDW-- 798

Query: 849  INPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLK 908
              P +SV+   K +       C++ G                   V+H   G V    L+
Sbjct: 799  -EPISSVLFSYKNEDHFN---CSSKG----------------NAHVVHTKGGPVCTCVLQ 838

Query: 909  DMVVLAIHTGRIYSIV---EIVNNSSAESPFDGNTDDDSKTFVNYFSEKYG-IVLIHPGQ 964
            + +V   H G +Y I    E +N  S     +G+    + T+  +F+++   I L+   +
Sbjct: 839  NSLVCTPHNGNVYFITGASEDLNGRSLLKLRNGS----AITYKEHFAKRRNSIQLLFDQE 894

Query: 965  PLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVV 1022
            PLL  +     HN L          K  K   N      HV +PPEL  ++   V IS +
Sbjct: 895  PLLEGRHIFPVHNFL-----NRCRTKKEKESKNA-----HVDLPPELCDIILSPVSISTL 944

Query: 1023 KSLYLLPSVMQRLESLMLASQLREEINCHS-RNFHIPSSLILEALTTLGCCESFSMERLE 1081
             S   +PS+M RLESL++A  L++  + H  +N  IP+  +LEA+TT  C E F +E LE
Sbjct: 945  YSYTFIPSIMHRLESLLIAVNLKKMHSDHCMQNVDIPAMKVLEAITTKKCQEKFHLESLE 1004

Query: 1082 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
             LGDS LKYA S  LF  Y   HEG LS ++   + N+ L + G D KL G+IR+ +FDP
Sbjct: 1005 TLGDSFLKYAASQQLFKLYQNHHEGLLSMKKEKIISNAALCRRGCDHKLPGFIRNESFDP 1064

Query: 1142 RRWVAPGQLSLRPVPCECGVDTL-EVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADC 1200
            + W+ PG         +CG D L E PL     ++  K+ V      G R + SKT+AD 
Sbjct: 1065 KLWMIPGD--------KCGSDLLSEEPL-----SECRKIYV-----RGRRKVKSKTVADV 1106

Query: 1201 AEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESK 1260
             EALIGAY   GG + AL+ M W+GI  D  +   +        +    +   ++ +ES 
Sbjct: 1107 VEALIGAYLSTGGEVLALFFMDWIGIKVDFMIVPYE-----RHFQLQAEKFVNVRYLESL 1161

Query: 1261 IGYEFTVKFLLQEAITHASVQ-----------EFY------------------------- 1284
            + Y F    LL EA+TH S             EF                          
Sbjct: 1162 LNYSFRDPSLLVEALTHGSYMLPEIPSCYQRLEFLGDAVLDYLITMHLYKEYPGMSPGLL 1221

Query: 1285 -----------CYQ------NLYKHLQHCSTLLLSQITEYVKSFPKP--GETTDSGPSMK 1325
                       CY       +L+KH+ H S  L   I E  + F K   G T        
Sbjct: 1222 TDLRSASVNNDCYAQSAVKGDLHKHILHTSQDLHKHIVETAEIFQKSSLGSTFGWESETS 1281

Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLG 1385
             PK LGD++ES+ GA+L+D+  N + V++  +P+L P++TP  + L P REL ELC    
Sbjct: 1282 FPKVLGDVIESLAGAILVDSGYNKEIVFQSIRPLLEPLITPATVRLHPARELSELCQKQH 1341

Query: 1386 Y-FVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
            + + K   +  G      + +    V          +K AK  A+ ++LK L+
Sbjct: 1342 FDYKKSVVSYNGRNASITIVVGANGVTFKHTATAADKKTAKKLASKEVLKSLK 1394


>gi|189908862|gb|ACE60552.1| dicer-like protein 2 [Brassica rapa]
          Length = 1392

 Score =  602 bits (1553), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 449/1474 (30%), Positives = 718/1474 (48%), Gaps = 193/1474 (13%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK--SNGFKKLIIFLAPTVH 104
            R YQ++  E A +RNTI  LETG+GKT+IA+ML++  A   +  S  F    +FL P V 
Sbjct: 24   RSYQVEALEKAMKRNTIVYLETGSGKTLIAIMLLRSYAYLFRKPSPCFS---VFLVPQVV 80

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LV QQ + ++ HTD +V  Y+G+ GVD WD+  W++E++  +VLVMTP ILL ALR +FL
Sbjct: 81   LVTQQAEALKRHTDLKVGMYWGSMGVDFWDAPTWKQEVDTYEVLVMTPAILLSALRHSFL 140

Query: 165  SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSSA 219
            SL+++  ++ DECHHA GNH Y  I+KEFYHK     +   P++FGMTASPV  KG    
Sbjct: 141  SLNMIKVLIFDECHHARGNHAYACILKEFYHKELKSATSLVPRIFGMTASPVKTKG--EN 198

Query: 220  MDCE-GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
            +D    +I ELES ++S+V+T  +++ +  FVP +  S ++Y   +   S   G +    
Sbjct: 199  LDSYWKKIHELESLMNSKVYTCANESVLAQFVPFSTPSFKYYTYVEIPSSARAGII---- 254

Query: 279  SKFDASLSKLQGSQLNCYKDMDDKHKT---LRKQLSDYHAKILYCLDELGLICAYEAVKI 335
                A L KL    L     +D K  T   ++K+LS   + I YCLDELG++ A +A   
Sbjct: 255  ----AELEKLAKEHLLALATLDLKSSTVNSIKKRLSKICSSITYCLDELGILMALKAA-- 308

Query: 336  CLEKVLKAQEECEIYRQ----SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVD 391
              +    +Q +  ++ Q    S    K F  +    I + +P  D  +     +  + ++
Sbjct: 309  --QSFSVSQNDFVLWGQLGEFSETSIKNFCRDASQAILAYIP--DGPYWSVA-NIERNLE 363

Query: 392  LGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-PFLTHLTVAYLTG 450
             G +++K+  L++  L +    ++ CIIFVER+IAA V+E F+ ++ P        Y+ G
Sbjct: 364  AGLVTSKIVCLVESLLGYSSLEKIRCIIFVERVIAAMVLESFLNEILPTYNSWKTKYVAG 423

Query: 451  STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510
            + + + + T K Q E +E FR G VN++ +T ++EEG+ V +C+ V+ FD    + S+IQ
Sbjct: 424  NNSGLQSQTRKKQNETVEDFRKGLVNIIVSTSILEEGLDVQSCNLVVGFDPASNICSFIQ 483

Query: 511  SRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTK 570
            S+GRAR  NS +++M+ERG+++ +++L   I   + + + +L      C        K  
Sbjct: 484  SQGRARMPNSDYLMMVERGDMETKSRLMTYISGGKRMREDSLRYSHVPC----QPLPKDS 539

Query: 571  S---YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSN 627
            S   Y V STGA VT  SSV+LI+ YC  LPSD+Y+ P P F     E+  +C L LP +
Sbjct: 540  SGDFYAVNSTGAIVTLSSSVSLIYFYCSRLPSDEYFKPAPRFDID--EDQGKCTLYLPKS 597

Query: 628  APFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLP 687
               + +      N+N+ KQ  CL+AC +LH+ GAL DHL+P        +++ K+     
Sbjct: 598  CQVKEV--RVQANRNVLKQTACLKACIQLHKAGALTDHLVP--------DMVLKETVQQK 647

Query: 688  GAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLL-IESELD 746
                    E     P   +S ++        H Y           ++   +LL    EL+
Sbjct: 648  LGKIHYDPEQSSYFPPELVS-QFSAHSQTTYHFYSIRMKSEFPRNLHFNDILLGTRVELE 706

Query: 747  NDVGN--FELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKS 804
             D+GN  F LE +L   T+  T+S  G   L  +++   + FQ   F  L     V++ +
Sbjct: 707  ADIGNTCFRLEDHL--GTIGVTLSYVGAFDLTQNEVLLCRRFQITLFRVLLDH-SVENLA 763

Query: 805  SGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSF 864
            +      L+         +  YLL+P    +T    +  I+W                  
Sbjct: 764  AALDGLHLRDGV------ALDYLLVP----STHEQKASLIDW------------------ 795

Query: 865  LGAAQCNNNGGNSSPCRTSPCKTGCHGKD---VIHLANGSVDAKNLKDMVVLAIHTGRIY 921
             G  +  N   N    R       C  KD   ++H  +G      L++ +V   H G +Y
Sbjct: 796  -GVLRSVNLTSN----RPRERHVDCSAKDASCILHTKDGLFCTCVLQNALVYTPHNGYVY 850

Query: 922  SIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVN 981
                I+++  A S        D  +++ Y+ +++ I L    +PLL  +     HN L  
Sbjct: 851  CTRGILSHLHANSILTKRKSGDV-SYMEYYEKRHEIRLNFVDEPLLNGRHIFTLHNHL-- 907

Query: 982  FNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLLPSVMQRLESLM 1039
                      ++     +  +  V +PPEL   +  PISV  + S   +PSVMQR+ESL+
Sbjct: 908  --------HMTRKKKEKEHDREFVELPPELCHVILSPISVDMIYSYKFMPSVMQRIESLL 959

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            +A  L++ I       +IP+  +LEA+TT  C + F +E LE LGDS LKYAV  HLF +
Sbjct: 960  IAFNLKKSIP----TVNIPTIKVLEAITTKKCQDQFHLESLETLGDSFLKYAVCQHLFQS 1015

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCEC 1159
            Y   HEG LS  +   + N TL K G ++KLQG+IR+  F+P+ W+ PGQ          
Sbjct: 1016 YDTHHEGLLSTIKDEMISNVTLCKFGCNQKLQGFIRNECFEPKGWMVPGQ---------- 1065

Query: 1160 GVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALY 1219
               +    L   + ++   + + +  ++       K++AD  EALIGAY   GG +AAL 
Sbjct: 1066 --SSAAYALVNDYLSESRNMYIARRMNLKR-----KSVADVVEALIGAYLSEGGELAALT 1118

Query: 1220 MMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
             M W+GI  D   +++       S+++   ++  ++ +ES + Y+F  K LL EA+TH S
Sbjct: 1119 FMNWVGIKVDFTTTMIQ---REPSIQA--EKLVNVRYMESLLNYKFKDKSLLVEALTHGS 1173

Query: 1280 --VQEF-YCYQ------------------------------------------------- 1287
              + E   CYQ                                                 
Sbjct: 1174 YMIPEIPRCYQRLEFLGDSVLDYLITKHLYGEYPNLSPGLLTDMRSASVNNECYAQVAVK 1233

Query: 1288 -NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDS---GPSMKAPKALGDLLESIVGAVLI 1343
             NL+KH+ H S  L   I+  V  F +      S      +  PK LGD++ES+ GA+ +
Sbjct: 1234 SNLHKHVLHASHDLHKHISRTVSEFERLSSVQSSFGWESEIAFPKVLGDVIESLAGAIHV 1293

Query: 1344 DTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAEL 1403
            D+  N + V+   KP+L  ++TP+ ++L P+REL ELC    + + +    +       +
Sbjct: 1294 DSGYNKEVVFACIKPLLGCMITPETVKLHPVRELTELCQKAQFELSKVKGFENGEAFFPV 1353

Query: 1404 RLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
             ++ K++      +   +K AK  A  ++L  L+
Sbjct: 1354 EVEAKEMSFAHTARAFDKKMAKKLAYKEVLNSLK 1387


>gi|251764670|sp|A7LFZ6.1|DCL4_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 4; AltName:
            Full=Dicer-like protein 4; Short=OsDCL4; AltName:
            Full=Protein SHOOT ORGANIZATION 1
 gi|152926631|gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group]
          Length = 1657

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 477/1509 (31%), Positives = 707/1509 (46%), Gaps = 178/1509 (11%)

Query: 34   GPSSSTN---SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN 90
            GPSS+         I R YQL + + A   N I  L TG GKT IAV+LI ++   I+  
Sbjct: 15   GPSSTRGEPKDPRTIARKYQLDLCKRAVEENIIVYLGTGCGKTHIAVLLIYELGHLIRKP 74

Query: 91   GFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVM 150
              +++ IFLAPT+ LV QQ  VI   TDF+V+ YYG  G +  D Q W+ ++ + +VLVM
Sbjct: 75   S-REVCIFLAPTIPLVRQQAVVIASSTDFKVQCYYG-NGKNSRDHQEWENDMREFEVLVM 132

Query: 151  TPQILLDALRKAFLSLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKS--DNKPKVFGM 206
            TPQILL +LR  F+ ++ +  +++DECHHA     HPY +IMKEFY+ +  +  P+VFGM
Sbjct: 133  TPQILLQSLRHCFIKMNSIALLILDECHHAQPQKRHPYAQIMKEFYNSNSVEKFPRVFGM 192

Query: 207  TASPVVRKGV--------------------------SSAMDCEGQISELESTLDSQVFTI 240
            TASP++ KGV                          S+ ++    I+ LE  L ++V ++
Sbjct: 193  TASPIIGKGVMPSHSFTEKGGRSPCQPLIFFLPKGGSNKLNYTKCINSLEELLHAKVCSV 252

Query: 241  EDKTEMEVFVPSAKESCRFY------DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLN 294
             D  E+E  V S      FY      + +  C  +L      S     ASL         
Sbjct: 253  -DNEELESVVASPDMEVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASLC-------- 303

Query: 295  CYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354
               D  D  K L K L   H  I++CL ELG   A +A +  L       +  E+    S
Sbjct: 304  ---DFKDSQKKL-KSLWRLHENIIFCLQELGSFGALQAARTFLSFDGDKLDRREVDLNGS 359

Query: 355  LQCKYFLEEVLHVIGSALPLADKIFLDFG-FDYSKAVDLGYISTKLHELLQLFLSFGKST 413
                 F    L+   S L          G FD  K ++  + S K   L+ +   +G   
Sbjct: 360  TSS--FAHHYLNGATSILSRNKTDGSHAGSFDLEK-LEEPFFSNKFSVLINVLSRYGLQE 416

Query: 414  QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473
             + CI+FV+RI  A+ +   ++ +  L      +L G  +    ++      +++ F  G
Sbjct: 417  NMKCIVFVKRITVARAISNILQNLKCLEFWKCEFLVGCHSGSKNMSRNKMDAIVQRFSSG 476

Query: 474  KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQ 533
            +VNLL AT V EEG+ +  C  V+RFDLP+TV+S+IQSRGRAR   S+++++LER N   
Sbjct: 477  EVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARMTKSKYVVLLERENQSH 536

Query: 534  RNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRY 593
               L   I  E  + +   SR     F      ++   Y V++TGAS++T  SV+L+H Y
Sbjct: 537  EKLLNGYIAGESIMNEEIDSRTSNDMF----DCLEENIYQVDNTGASISTACSVSLLHCY 592

Query: 594  CEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEAC 653
            C+ LP D ++TP P+F Y    E   C L LP NA F+   G    +K+ +K+  CL+AC
Sbjct: 593  CDNLPRDMFFTPSPVFFYIDGIEGIICRLILPPNAAFRQADGQPCLSKDEAKRDACLKAC 652

Query: 654  EKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGA--GTTKRKELHGTTPIRALSGRWG 711
             KLH++GAL D LLP     S  N +S  N S        + R+ELH    I A+    G
Sbjct: 653  VKLHKLGALTDFLLPG--PGSRKNKVSVTNNSSNNKVEDDSLREELHEML-IPAVLKPSG 709

Query: 712  EKCGVI--LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV-SKTVKATVS 768
             K   +  LH Y   F        Y  F L + + L  +    +++L+L   + VKA + 
Sbjct: 710  LKLDSLSNLHFYYVKFIPIPEDRRYQMFGLFVINPLPVEAETLQVDLHLARGRIVKAGIK 769

Query: 769  SSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLL 828
              G++  + ++M  A  FQE+       K+ +      S    L  +  +L   S  YLL
Sbjct: 770  HLGKIAFEKEKMMLAHKFQEMCL-----KILLDRSEFTSPHVKLGNDV-TLEINSTFYLL 823

Query: 829  LPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTG 888
            LP++    +GD  + I+W  +  C                        SSP    P    
Sbjct: 824  LPIK-QKCYGD-RFMIDWPAVERCL-----------------------SSPIFKDPIDVS 858

Query: 889  CHG----KDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDS 944
             H      + + L +G     ++   VV + H    + +  I++  +A S   G      
Sbjct: 859  VHASYSSNESLRLLDGIFSKTDVVGSVVFSPHNNIFFFVDGILDEINAWSEHSG------ 912

Query: 945  KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMH 1004
             T+  +F E++ I L HP QPLL+ KQ  N  NLL N        +G +        +  
Sbjct: 913  ATYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHNRLPETTESEGREL------LEHF 966

Query: 1005 VHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLRE-EINCHSRNFHIPSSL 1061
            V +PPEL  L  +     +  SL LLPS+M RLE+L++A +L++  ++       I +S 
Sbjct: 967  VELPPELCSLKVIGFSKDMGSSLSLLPSLMYRLENLLVAIELKDVMLSSFPEASQISASG 1026

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            ILEALTT  C E  S+ER E+LGD+ LKY V  H F+TY    EGQL+ RRS  V NS L
Sbjct: 1027 ILEALTTEKCLERISLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHL 1086

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVV 1181
            ++L   +KLQ YIRD  F+P ++ APG    RP    C  D +EV L       D +   
Sbjct: 1087 YELSIRKKLQVYIRDQQFEPTQFFAPG----RPCKVVCNTD-VEVRLHQMDIHPDNRENC 1141

Query: 1182 GKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITR 1241
               C   H W+  K IAD  E+LIGA+ V GG  AA   + W+GID D     +   +  
Sbjct: 1142 NLRCTRSHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDVDFNNPALYRVLDS 1201

Query: 1242 ASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY--CYQNL---------- 1289
            +S+   +    +I  +E  IGY+F  K LL +A  H S  +    CYQ L          
Sbjct: 1202 SSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEY 1261

Query: 1290 ----------------------------------------YKHLQHCSTLLLSQITEYVK 1309
                                                    +KHL   S  L S I+++  
Sbjct: 1262 VITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEM 1321

Query: 1310 SFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKL 1369
                     D       PKALGD++ES +GAVL+D+  NL+ VW++   +L P++T   +
Sbjct: 1322 YVKLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANM 1381

Query: 1370 ELPPLRELIELCDSLGYFVKENCTLKGE-MVHAELRLQLKDVLLVGEGQERSRKAAKGKA 1428
               P+REL ELC   G+ +     +K +   H ++ + +K  +++     R+ KAA+  A
Sbjct: 1382 HTNPMRELRELCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFA 1441

Query: 1429 ASQLLKKLE 1437
            A + L KL+
Sbjct: 1442 AQETLSKLK 1450


>gi|255547506|ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis]
 gi|223545861|gb|EEF47364.1| ATP binding protein, putative [Ricinus communis]
          Length = 1388

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 453/1480 (30%), Positives = 715/1480 (48%), Gaps = 200/1480 (13%)

Query: 49   YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI-KSNGFKKLIIFLAPTVHLVH 107
            YQL+  E A ++NTI  LETG+GKT+IA+ML++  A  + K + F  + +FL P V LV 
Sbjct: 12   YQLEALEKAIQQNTIVFLETGSGKTLIAIMLLRSYAHLLRKPSPF--IAVFLVPQVVLVK 69

Query: 108  QQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
            QQ + +  HTD  V +Y+G  GVD WD+  W+++I + +VLVMTPQILLD LR +F  LD
Sbjct: 70   QQAEAVETHTDLTVGKYWGEMGVDFWDAGSWKQQIEQYEVLVMTPQILLDGLRHSFFKLD 129

Query: 168  IVCFIVIDECHHATGNHPYTKIMKEFYHKS-----DNKPKVFGMTASPVVRKGVSSAMDC 222
             +  ++ DECHHA G HPY  I+ EFYH+         P++FGMTASP+  KG  S +  
Sbjct: 130  CIKVLIFDECHHARGKHPYACILTEFYHRQLTYRDSALPRIFGMTASPIKSKGAKSELAY 189

Query: 223  EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY---DQSKFCGSDLKGKLEVSWS 279
              +I ELE+ + S+V+T   ++ +  F+P +    +FY   D      + L   L++  S
Sbjct: 190  WTEIRELENIMYSKVYTCASESVLAEFIPFSTPKFKFYKPMDIPYAIYASLAENLKILKS 249

Query: 280  KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339
            K++ +L  L  +        D   ++  K++S  H+ ++YCLDELG+  A +A +I    
Sbjct: 250  KYECNLKLLDLT--------DAVVESTSKRISKMHSTLMYCLDELGVWLALKAAQIL--- 298

Query: 340  VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVD-------- 391
                         S  + ++F    L + G      + I  +FG + S+A+D        
Sbjct: 299  -------------SCHESEFFSCGKLDISG------ENIVKEFGLNASQALDNCINSGPK 339

Query: 392  ------------LGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-- 437
                         G ++TK+  L+   L +     + CIIFV R+IAA V++  + ++  
Sbjct: 340  WSIGENAEADIEAGLLTTKIFCLIDSLLDYRDIRDLRCIIFVNRVIAAIVLQTLLGELLP 399

Query: 438  PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
             + +     Y+ G+   + + + K Q E++E FR GKVN++ AT ++EEG+ V +C+ V+
Sbjct: 400  RYNSGWKTQYIAGNNFRLQSQSRKTQNEIVEEFREGKVNIIVATSILEEGLDVQSCNLVV 459

Query: 498  RFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPE 557
            RFD   TVSS+IQSRGRAR  NS ++LM++ G++   ++L + + S   +   ++     
Sbjct: 460  RFDPSTTVSSFIQSRGRARMQNSDYLLMVKSGDVSTHSRLENYLASGDLMRKESIRHGSV 519

Query: 558  ACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA 617
             C      + + + Y VEST A VT  SSV+LI+ YC  LPSD Y+ P P  +    +E 
Sbjct: 520  PCSPIRSEFHEGEYYFVESTNALVTLTSSVSLIYFYCSRLPSDGYFKPTP--RCLIDKEM 577

Query: 618  YECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENN 677
              C L LP +    TI      N  + KQ  CLEAC++LH++GALND+L+P +       
Sbjct: 578  ERCTLLLPKSCSIHTI--SVEGNVKIIKQKACLEACKQLHKIGALNDNLVPDI------- 628

Query: 678  LISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEI-YSG 736
            ++ +      G G    +      P   L G+  +K     + Y      + V EI    
Sbjct: 629  VVEETVAQQSGNGPYDDEHPMYFPP--ELVGQASQKSEAKYYCYLIELNQNFVYEIPVHN 686

Query: 737  FVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFG 796
            FVL + SEL++D+   +L+L      +   +   G++HL  + +   + F       L  
Sbjct: 687  FVLAMRSELESDILGLDLDLEADRGLLMVKLKYIGEIHLTPETVIMCRKF-------LIT 739

Query: 797  KLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVV 856
             L V    S  +   + +       P   YLLLPL  V +    S  I+W  +    + V
Sbjct: 740  VLKVLVDHSIDKLEDILKGLKLRNGPEIDYLLLPL--VGSCQKPS--IDWDAV----TSV 791

Query: 857  EFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIH 916
             F  E        C        P + + C        VI   +G V    L++ VV   H
Sbjct: 792  LFSYENVLEDHKNC--------PLKEAAC--------VIQTKDGVVCKCTLQNSVVYTPH 835

Query: 917  TGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPH 976
             G++Y I   +++ +  S  +   +   K+++ Y+ +++GI L    Q LLR +      
Sbjct: 836  NGKVYFIDGTLDHLNGHSLLELR-NGYHKSYMEYYKDQHGIKLHFDQQLLLRGRHIFPLQ 894

Query: 977  NLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLLPSVMQR 1034
            N L          +  K   N      +V +PPEL      PIS+    S   +PS+M R
Sbjct: 895  NYL-----NRCRQQKEKDSQNA-----YVELPPELCHIFMSPISISSFYSFTFVPSIMHR 944

Query: 1035 LESLMLASQLRE-EINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVS 1093
            LESL++AS L++  ++   ++  IP+  +LEA+TT  C E F +E LE LGDS LKYAV 
Sbjct: 945  LESLLIASNLKKLHLDHCMQSVAIPTIKVLEAITTKKCQEKFHLESLETLGDSFLKYAVG 1004

Query: 1094 CHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLR 1153
              LF TY   HEG LS ++   + N+TL +LG D K+ G+IR+ +FDP+ W+ P ++S  
Sbjct: 1005 QQLFKTYQNHHEGLLSIKKDKLISNATLCRLGCDSKIPGFIRNESFDPKNWLIPDEIS-- 1062

Query: 1154 PVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG 1213
                 C   + E+  +G+      K+ + +      R +  K IAD  EALIGAY   GG
Sbjct: 1063 ----GCYSLSEEILSNGR------KMYIKR-----RRKLKEKMIADVVEALIGAYLSTGG 1107

Query: 1214 LIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQE 1273
             IA L  + W+GI AD  +++  +     +   YV     I  +ES + Y F    LL E
Sbjct: 1108 EIAGLLFLDWIGIKADF-LNMPYERGFEMNPEKYV----NICHLESLLKYSFRDPCLLVE 1162

Query: 1274 AITHASVQ-----------EFY------------------------------------CY 1286
            A+TH S             EF                                     CY
Sbjct: 1163 ALTHGSYMLPEIPRCYQRLEFLGDSVLDYLITVHLYEKYPGMSPGLLTDMRSASVNNDCY 1222

Query: 1287 ------QNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSG--PSMKAPKALGDLLESIV 1338
                  + L+K++ H S  L   I   V +  +    +  G    +  PK LGD++ES+ 
Sbjct: 1223 AQSAVREGLHKYILHASQKLHKDIVSTVANCKEFSSESTFGWESEISFPKVLGDVIESLA 1282

Query: 1339 GAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGE- 1397
            GA+ +D+  N + V+   +P+L P++TP+ + L P REL ELC    +  ++    +   
Sbjct: 1283 GAIFVDSGYNKEVVFNSIRPLLEPLITPETIRLHPTRELTELCQKQHFDRRKPVVSRNNG 1342

Query: 1398 MVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
            M    + ++   V+         RK AK  A+ ++L+ L+
Sbjct: 1343 MSCVTVEVEANGVVFKHTSAAAERKTAKRLASKEVLRALK 1382


>gi|357115872|ref|XP_003559709.1| PREDICTED: endoribonuclease Dicer homolog 2a-like [Brachypodium
            distachyon]
          Length = 1402

 Score =  593 bits (1530), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 435/1471 (29%), Positives = 689/1471 (46%), Gaps = 192/1471 (13%)

Query: 45   IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
            I R YQL+  E A   NT+A L TG+GKT+IAV+L++  A  ++S   +   +FL PTV 
Sbjct: 26   IARWYQLEALERALCGNTVAFLGTGSGKTLIAVLLLRAYAHRVRSPA-RDFAVFLVPTVV 84

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LV QQ  VI  HTD  V+ + G   VD WD+  W++ ++  +VLVMTPQILL+ L  +F 
Sbjct: 85   LVDQQARVIEAHTDLRVDRFSGDMKVDYWDAPTWRRVVDDAEVLVMTPQILLNNLIHSFF 144

Query: 165  SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKVFGMTASPVVRKGVSS 218
             L  +  ++ DECH A GNHPY  I+KEFYH   N       P++FGMTASPV  K +  
Sbjct: 145  RLQDIALLIFDECHRAKGNHPYACILKEFYHAQLNSRPQDPLPRIFGMTASPVNTKNLQP 204

Query: 219  AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
                + +IS+LE+ L+S+V+T+++++ +  ++  A      YD S    +        S+
Sbjct: 205  DTYLK-RISQLENLLNSKVYTVDNESALSEYIQYATTRIVHYDDSIIPSN--------SY 255

Query: 279  SKFDASLSKLQGSQLNCYKD--MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKI- 335
            +   + L++L+   L   K        K  ++++S  H   LYC  +LG+  A +A ++ 
Sbjct: 256  NHVMSCLNRLKEKHLEVLKANLYGSSLKVAKERISRLHRTFLYCTADLGIWLASKAAEVQ 315

Query: 336  -CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGY 394
               E+ L    E +I +      + + EEV   +              G D    +  G 
Sbjct: 316  SSNEQFLSFWGE-QIEKDVEGFIRNYSEEVYRELSCCSKTGH-----IGEDLEANLQDGL 369

Query: 395  ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS 454
            ++ K+H L+Q  L +     + CI+FVER+I + V++  +  +  ++   V Y+TG  + 
Sbjct: 370  LTRKVHCLVQTLLEYRHKQDLRCIVFVERVITSVVLKSLLSTITQMSGWIVKYMTGGISG 429

Query: 455  VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
            + + + K + E+L+SFR G+V+L+ AT V+EEG+ VP+C+ VIRFD P TV S+IQSRGR
Sbjct: 430  LHSQSRKERTEILDSFRRGEVHLIVATQVLEEGLDVPSCNLVIRFDPPATVRSFIQSRGR 489

Query: 515  ARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIV 574
            AR  NS ++L++ RG+    +K    + S + + + +L      C        +   Y V
Sbjct: 490  ARMQNSDYVLLVRRGDAAALSKTEKYLASGQLMREESLRLASTMCQPLENPLCEEDYYRV 549

Query: 575  ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIV 634
            ESTGA+VT ++S++LI+ +C  LPSD+Y+ P P F    A  +  C L LP ++P QT+ 
Sbjct: 550  ESTGATVTINTSISLIYLFCSKLPSDEYFKPLPRFSINKA--SCTCTLYLPKSSPVQTV- 606

Query: 635  GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKR 694
              T    ++ K+ VCL+AC +LH +GAL D LLP +  P E           P     K 
Sbjct: 607  -STEGEVDVLKKEVCLKACRELHAIGALTDSLLPELGFPCEEE---------PDIVVEKY 656

Query: 695  KELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFE 753
            +          L   W    C  I   Y  +    + T   +  +L ++ ++ +D  +  
Sbjct: 657  QHEQPAYFPEELVDNWLSFSCLGIYICYMISLEGFLQTTAPTDIILAMKCDMGSDFVSRS 716

Query: 754  LELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQ----ELFFNGLFGKLFVKSKSSGSRE 809
             +LY     V   +   G +HL+ +Q+  A+ FQ     L  N      +   +S G   
Sbjct: 717  FKLYGTQDYVTVAIKYMGIIHLNQEQVIIARRFQTSILSLLINNAIKYYYEMQRSIG--- 773

Query: 810  FFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQ 869
                           +YLLLPL         S +I+W  +              F    +
Sbjct: 774  --------------IVYLLLPLV--------SGKIDWCTMK-------------FSAPQE 798

Query: 870  CNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEI--V 927
             NN   +   C +      C   D++   +G +    L++ ++   H  R+Y+I     +
Sbjct: 799  VNNK--DVRHCHS------CKEVDLLQTKDGLLCRCMLRNSIICTPHNSRLYAITGFLDL 850

Query: 928  NNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGG 987
            N  S     DG+      T++ YF  ++G+ L +  QPLL   +     N L        
Sbjct: 851  NAKSLLHLRDGSI----LTYITYFKTRHGLRLTNENQPLLAASKLGQVRNFL-------- 898

Query: 988  SGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
              K +            V +PPEL  +V   VP  ++ S  ++PSVM R+  ++L+++L+
Sbjct: 899  -HKRNYKNEKVSSSSFAVELPPELCRVVMSPVPADILYSFSIIPSVMYRIHGMLLSAKLK 957

Query: 1046 EEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHE 1105
             ++    + F +P   ILEALTT  C E FS E LE LGDS LKY  + HL+  Y   HE
Sbjct: 958  VQLGPRMQQFSVPDLKILEALTTKECQEEFSQESLETLGDSFLKYVTTQHLYTKYKLHHE 1017

Query: 1106 GQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLE 1165
            G L+  +   + N+ L +L  +  L GYI+   F+P+ W  PG L        CG  +  
Sbjct: 1018 GTLTKMKKNLISNAALCQLACNNNLVGYIQGEVFNPKGWFIPG-LGYD----TCGNKSFC 1072

Query: 1166 VPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLG 1225
            +  +G +  +   +              SK IAD  EALIGAY    G  AA   +  LG
Sbjct: 1073 LSSNGMYSLRKISI-------------KSKRIADTVEALIGAYLSAAGEQAAFLFINSLG 1119

Query: 1226 IDADL--EVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ-- 1281
            +D     E+ +  + + +            I+ +E  +GY F    LL EA+TH S Q  
Sbjct: 1120 MDIGFHSEIPIERNIVIKPE------EFINIRSLEIILGYNFKDPLLLIEALTHGSYQIA 1173

Query: 1282 -EFYCYQN--------------------------------------------------LY 1290
                CYQ                                                   L 
Sbjct: 1174 GPTACYQRLEFLGDAVLDHLVTVYYYNTYPECTPALLTDLRSASVNNNCYAHASVKAGLN 1233

Query: 1291 KHLQHCSTLLLSQITEYVKSFPK----PGETTDSGPSMKAPKALGDLLESIVGAVLIDTK 1346
            KH+ H ST L  ++  Y+++F +    P    ++G  +  PK LGD++ESI GA+ +D+K
Sbjct: 1234 KHILHSSTELHRKMAYYLENFGQAFTGPSHGWEAGIGL--PKVLGDVIESIAGAIYLDSK 1291

Query: 1347 LNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQ 1406
             + + VWR  KP+L P+ TP+ +E  P++EL E CD   Y      T +G +      +Q
Sbjct: 1292 YDKEMVWRSMKPLLEPLATPETVERDPVKELQEFCDRRSYSRSYTKTHEGGVSSVVAEVQ 1351

Query: 1407 LKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
            ++  +       R +  A+  A   LL+ L+
Sbjct: 1352 VEGTIYSATRSGRDKTVAQKLAVKSLLEDLK 1382


>gi|224088236|ref|XP_002308384.1| dicer-like protein [Populus trichocarpa]
 gi|222854360|gb|EEE91907.1| dicer-like protein [Populus trichocarpa]
          Length = 1588

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 484/1654 (29%), Positives = 760/1654 (45%), Gaps = 261/1654 (15%)

Query: 45   IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
            + R YQL++ + A   N I  L TG GKT IAV+LI ++   I+    K   +FLAPTV 
Sbjct: 48   MARKYQLELCKKALEENIIVYLGTGCGKTHIAVLLIYEMGHLIRQPQ-KSACVFLAPTVA 106

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LVHQQ  VI   TDF+V  Y G     +  S  W+KEI +N+VLVMTPQILL  L  +F+
Sbjct: 107  LVHQQAKVIEDSTDFKVGIYCGKSNRLKTHSS-WEKEIEQNEVLVMTPQILLYNLSHSFI 165

Query: 165  SLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKSDNK-PKVFGMTASPVV-----RKGV 216
             +D++  ++ DECHHA     HPY +IMK FY  +D K P++FGMTASPVV     R+ V
Sbjct: 166  KMDLIALLIFDECHHAQVKSGHPYAQIMKVFYKNNDGKLPRIFGMTASPVVGKEKYRERV 225

Query: 217  SS---------AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG 267
            +S           +    I+ LE+ LD++V+++EDK E+E FV S       Y      G
Sbjct: 226  TSLEILLHHLIRENLPRSINSLENLLDAKVYSVEDKEELECFVASPVIRVYLY------G 279

Query: 268  SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKH---------KTLRKQLSDYHAKIL 318
                G    + S ++A  + L+G +  C  ++  K          ++ ++ L   H  I+
Sbjct: 280  PVANG----TSSSYEAYYNILEGVKRQCIVEIGKKTDGNQSLESLRSTKRMLIRMHENII 335

Query: 319  YCLDELGLICAYEAVKICL---EKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLA 375
            +CL+ LGL  A +A +I L        A  E E        C  +L +  +V  +     
Sbjct: 336  FCLENLGLWGALQACRILLSGDHSEWNALIEAEGNTSDVSMCDRYLNQATNVFAAD---C 392

Query: 376  DKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435
             +  +       + +   + S KL  L+++  +F     + CI+FV RI+ A+ +   ++
Sbjct: 393  TRDGVTSNVSQVEVLKEPFFSRKLLRLIEILSNFRLQPDMKCIVFVNRIVTARSLSHILQ 452

Query: 436  KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSY 495
             + FLT     +L G  + + +++ K    +LE FR GK+NLL AT V EEG+ +  C  
Sbjct: 453  NLKFLTSWKCDFLVGVHSGLKSMSRKTMNVILERFRTGKLNLLLATKVGEEGLDIQTCCL 512

Query: 496  VIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRD 555
            VIRFDLP+TV+S+IQSRGRAR   S+++ +++ GN K+R+ +      E  +      R 
Sbjct: 513  VIRFDLPETVASFIQSRGRARMPQSEYVFLVDSGNQKERDLIEKFKIDEARMNIEICDRT 572

Query: 556  PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE 615
                F      ++ K Y V +TGAS+T+  S++L+ +YC  LP D+Y+ PKP F Y    
Sbjct: 573  SRETF----DSIEEKIYKVHATGASITSGLSISLLQQYCSKLPHDEYFDPKPKFFYFDDS 628

Query: 616  EAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSE 675
            E   C + LPSNAP   IVG    +  ++K+  CL+A E+LH++GAL++ LLP  E+ +E
Sbjct: 629  EGTVCHIILPSNAPTHKIVGTPQSSIEVAKKDACLKAIEQLHKLGALSEFLLPQQEDTNE 688

Query: 676  NNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGE-KCGVILHAYKFNFACSIVTEIY 734
              L+S  +++     +  R EL        L   W E +  + L++Y   F       IY
Sbjct: 689  LELVSSDSDNCEDKDS--RGELREMLVPAVLKESWTELEKPIHLNSYYIEFCPVPEDRIY 746

Query: 735  SGFVLLIESELDNDVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNG 793
              F L +++ L  +     LEL+L   ++V   +  SG      D+++ A  FQELF   
Sbjct: 747  KQFGLFLKAPLPLEADKMSLELHLARGRSVMTKLVPSGLSKFSTDEITHATNFQELFLKA 806

Query: 794  LFGKLFVKSKSSGSREFF-LKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPC 852
            +        +S    E+  L ++  S   P++ YLLLP  ++    +    ++W  I  C
Sbjct: 807  IL------DRSEFVHEYVPLGKDALSKSCPTF-YLLLP--VIFHVSERRVTVDWEIIRRC 857

Query: 853  ASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVV 912
             S   F              N  N+      P        D + LANG    +++++ +V
Sbjct: 858  LSSPVF-------------KNPANAVDKGILP------SNDCLQLANGCSSIRDVENSLV 898

Query: 913  LAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQS 972
               H  + Y I  IV   + +SP  G+                               +S
Sbjct: 899  YTPHQKKFYFITNIVPEKNGDSPCKGSN-----------------------------TRS 929

Query: 973  HNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPS 1030
            H  H       +                 +  V + PEL  L  +     +  S+ LLPS
Sbjct: 930  HKDHLTTTELQE---------------LDEHFVDLAPELCELKIIGFSKDIGSSISLLPS 974

Query: 1031 VMQRLESLMLASQLREEINC-HSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLK 1089
            VM RLE+L++A +L+  ++   S    + +  +LEALTT  C E  S+ERLE LGD+ LK
Sbjct: 975  VMHRLENLLVAIELKCILSASFSEGDKVTAHRVLEALTTEKCQERLSLERLETLGDAFLK 1034

Query: 1090 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQ 1149
            +AV  H FL +    EG+L+ +RS AV                +IRD  FDP ++ A G 
Sbjct: 1035 FAVGRHFFLLHDTLDEGELTRKRSNAV----------------FIRDQPFDPYQFFALGH 1078

Query: 1150 LSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP------CDMGHRWMGSKTIADCAEA 1203
                P P  C  ++     +G   +Q    V G+       C  GH W+ +KT++D  EA
Sbjct: 1079 ----PCPRICTKES-----EGTIHSQCGSHVTGQAKGSEVRCSKGHHWLHNKTVSDVVEA 1129

Query: 1204 LIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYV---PRINEIKDIESK 1260
            LIGA+ V  G  AA+  ++W+GI  D + S V + I +AS R+Y    P ++ +  +E+ 
Sbjct: 1130 LIGAFLVDSGFKAAIAFLRWIGIKVDFDDSQVIN-ICQAS-RTYAMLNPSMD-LATLENL 1186

Query: 1261 IGYEFTVKFLLQEAITHASVQE------------------------FYCYQNLYK--HLQ 1294
            +G++F  K LL +A  H S +                         + C+    K  HL 
Sbjct: 1187 LGHQFLYKGLLLQAFVHPSHKNGGEFGVMILQFAMTLMFPPEIGVPWRCFYPKMKPGHLT 1246

Query: 1295 HCSTLLLSQ-----------ITEYV-----------KSF------PKPGETTDSGPSMKA 1326
               ++L++              EY+           K F      PK       GP  K 
Sbjct: 1247 DLRSVLVNNRAFASVAVDRSFHEYLICDSDALSAATKKFVDFVRTPKSERRLLEGP--KC 1304

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGY 1386
            PK LGDL+ES VGA+L+DT  +L+ +W+I    L PI +   L++ P+REL ELC S  +
Sbjct: 1305 PKVLGDLVESSVGAILLDTGFDLNHIWKIMLSFLDPISSFSNLQINPVRELKELCQSHNW 1364

Query: 1387 FVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE-----VCEK 1441
              +   + KG     ++ L  KD+ +       ++K A   A+ ++  +L+         
Sbjct: 1365 DFEVPASKKGRTFSVDVTLSGKDMNISASASNSNKKEAIRMASEKIYARLKDQGLIPMTN 1424

Query: 1442 RISKGASNTGKLGDDCRQTTKEDLP----------EPPSCKRQKGTEAAIPAGDSCKKAY 1491
             + +   N+ K+  + +    ++ P          E    +   G   +    DSC   +
Sbjct: 1425 SLEEVLRNSQKM--EAKLIGYDETPIDVALDAHGFENSKIQEPFGINCSYEVRDSCPPRF 1482

Query: 1492 CMTVGTPVVAPINMKKGGP--------RTSLFQLCKTMLWPMPTFETTESKSRTLLVFCE 1543
               V    ++P++   G P        R+ L ++C    W  P+FE            C 
Sbjct: 1483 -EAVDAWSLSPLDFTGGQPSKVDLGTARSRLREICAANSWKPPSFE------------CC 1529

Query: 1544 GLEKRTGFSSFVSKITLHIPEFGNV--ECNGDPR 1575
              E  +   SF  K+ + I E   +  EC G P+
Sbjct: 1530 TEEGPSHLKSFTYKVVVEIEEAPEMSFECVGSPQ 1563


>gi|32488296|emb|CAE03362.1| OSJNBb0065L13.5 [Oryza sativa Japonica Group]
 gi|116311061|emb|CAH67991.1| OSIGBa0157K09-H0214G12.2 [Oryza sativa Indica Group]
          Length = 1604

 Score =  589 bits (1519), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 473/1482 (31%), Positives = 692/1482 (46%), Gaps = 177/1482 (11%)

Query: 34   GPSSSTN---SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN 90
            GPSS+         I R YQL + + A   N I  L TG GKT IAV+LI ++   I+  
Sbjct: 15   GPSSTRGEPKDPRTIARKYQLDLCKRAVEENIIVYLGTGCGKTHIAVLLIYELGHLIRKP 74

Query: 91   GFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVM 150
              +++ IFLAPT+ LV QQ  VI   TDF+V+ YYG  G +  D Q W+ ++ + +VLVM
Sbjct: 75   S-REVCIFLAPTIPLVRQQAVVIASSTDFKVQCYYG-NGKNSRDHQEWENDMREFEVLVM 132

Query: 151  TPQILLDALRKAFLSLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKS--DNKPKVFGM 206
            TPQILL +LR  F+ ++ +  +++DECHHA     HPY +IMKEFY+ +  +  P+VFGM
Sbjct: 133  TPQILLQSLRHCFIKMNSIALLILDECHHAQPQKRHPYAQIMKEFYNSNSVEKFPRVFGM 192

Query: 207  TASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY------ 260
            TASP++ KG S+ ++    I+ LE  L ++V ++ D  E+E  V S      FY      
Sbjct: 193  TASPIIGKGGSNKLNYTKCINSLEELLHAKVCSV-DNEELESVVASPDMEVYFYGPVNHS 251

Query: 261  DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYC 320
            + +  C  +L      S     ASL            D  D  K L K L   H  I++C
Sbjct: 252  NLTTICIKELDSLKLQSERMLRASLC-----------DFKDSQKKL-KSLWRLHENIIFC 299

Query: 321  LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
            L ELG   A +A +  L       +  E+    S     F    L+   S L        
Sbjct: 300  LQELGSFGALQAARTFLSFDGDKLDRREVDLNGSTSS--FAHHYLNGATSILSRNKTDGS 357

Query: 381  DFG-FDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
              G FD  K ++  + S K   L+ +   +G    + CI+FV+RI  A+ +   ++ +  
Sbjct: 358  HAGSFDLEK-LEEPFFSNKFSVLINVLSRYGLQENMKCIVFVKRITVARAISNILQNLKC 416

Query: 440  LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
            L      +L G  +    ++      +++ F  G+VNLL AT V EEG+ +  C  V+RF
Sbjct: 417  LEFWKCEFLVGCHSGSKNMSRNKMDAIVQRFSSGEVNLLVATSVGEEGLDIQTCCLVVRF 476

Query: 500  DLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC 559
            DLP+TV+S+IQSRGRAR   S+++++LER N      L   I  E  + +   SR     
Sbjct: 477  DLPETVASFIQSRGRARMTKSKYVVLLERENQSHEKLLNGYIAGESIMNEEIDSRTSNDM 536

Query: 560  FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYE 619
            F   C  ++   Y V++TGAS++T  SV+L+H YC+ LP D ++TP P+F Y    E   
Sbjct: 537  F--DC--LEENIYQVDNTGASISTACSVSLLHCYCDNLPRDMFFTPSPVFFYIDGIEGII 592

Query: 620  CELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLI 679
            C L LP NA F+   G    +K+ +K+  CL+AC KLH++GAL D LLP     S  N +
Sbjct: 593  CRLILPPNAAFRQADGQPCLSKDEAKRDACLKACVKLHKLGALTDFLLPG--PGSRKNKV 650

Query: 680  SKKNESLPGA--GTTKRKELHGTTPIRALSGRWGEKCGVI--LHAYKFNFACSIVTEIYS 735
            S  N S        + R+ELH    I A+    G K   +  LH Y   F        Y 
Sbjct: 651  SVTNNSSNNKVEDDSLREELHEML-IPAVLKPSGLKLDSLSNLHFYYVKFIPIPEDRRYQ 709

Query: 736  GFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLF 795
             F L + + L                           V  +  QM  A  FQE+      
Sbjct: 710  MFGLFVINPL--------------------------PVEAETLQMMLAHKFQEMCL---- 739

Query: 796  GKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASV 855
             K+ +      S    L  +  +L   S  YLLLP++    +GD  + I+W  +  C   
Sbjct: 740  -KILLDRSEFTSPHVKLGNDV-TLEINSTFYLLLPIK-QKCYGD-RFMIDWPAVERCL-- 793

Query: 856  VEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHG----KDVIHLANGSVDAKNLKDMV 911
                                 SSP    P     H      + + L +G     ++   V
Sbjct: 794  ---------------------SSPIFKDPIDVSVHASYSSNESLRLLDGIFSKTDVVGSV 832

Query: 912  VLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQ 971
            V + H    + +  I++  +A S   G       T+  +F E++ I L HP QPLL+ KQ
Sbjct: 833  VFSPHNNIFFFVDGILDEINAWSEHSG------ATYAEHFKERFRIELSHPEQPLLKAKQ 886

Query: 972  SHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLP 1029
              N  NLL N        +G +        +  V +PPEL  L  +     +  SL LLP
Sbjct: 887  IFNLRNLLHNRLPETTESEGREL------LEHFVELPPELCSLKVIGFSKDMGSSLSLLP 940

Query: 1030 SVMQRLESLMLASQLRE-EINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVL 1088
            S+M RLE+L++A +L++  ++       I +S ILEALTT  C E  S+ER E+LGD+ L
Sbjct: 941  SLMYRLENLLVAIELKDVMLSSFPEASQISASGILEALTTEKCLERISLERFEVLGDAFL 1000

Query: 1089 KYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPG 1148
            KY V  H F+TY    EGQL+ RRS  V NS L++L   +KLQ YIRD  F+P ++ APG
Sbjct: 1001 KYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQQFEPTQFFAPG 1060

Query: 1149 QLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAY 1208
                RP    C  D +EV L       D +      C   H W+  K IAD  E+LIGA+
Sbjct: 1061 ----RPCKVVCNTD-VEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVESLIGAF 1115

Query: 1209 YVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVK 1268
             V GG  AA   + W+GID D     +   +  +S+   +    +I  +E  IGY+F  K
Sbjct: 1116 LVEGGFKAAFAFLHWIGIDVDFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHK 1175

Query: 1269 FLLQEAITHASVQEFY--CYQNL------------------------------------- 1289
             LL +A  H S  +    CYQ L                                     
Sbjct: 1176 GLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVG 1235

Query: 1290 -------------YKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLES 1336
                         +KHL   S  L S I+++           D       PKALGD++ES
Sbjct: 1236 NDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALGDIVES 1295

Query: 1337 IVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKG 1396
             +GAVL+D+  NL+ VW++   +L P++T   +   P+REL ELC   G+ +     +K 
Sbjct: 1296 CIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMKA 1355

Query: 1397 E-MVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
            +   H ++ + +K  +++     R+ KAA+  AA + L KL+
Sbjct: 1356 DGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLK 1397


>gi|255548081|ref|XP_002515097.1| dicer-1, putative [Ricinus communis]
 gi|223545577|gb|EEF47081.1| dicer-1, putative [Ricinus communis]
          Length = 1543

 Score =  587 bits (1514), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 453/1485 (30%), Positives = 694/1485 (46%), Gaps = 245/1485 (16%)

Query: 166  LDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCE 223
            ++ +  +++DECHHA   HPY+ +M EFYH +  + +P VFGMTASPV  KGVSS +DC 
Sbjct: 1    MEAINLLILDECHHAVKKHPYSLVMSEFYHTTLKEKRPSVFGMTASPVNLKGVSSQVDCA 60

Query: 224  GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVSWSKF 281
             +I  LES LDS V TI+D+ E+E  VP   E    YD++    S  +   ++EV+  + 
Sbjct: 61   IKIRNLESKLDSIVCTIKDRKELEKHVPMPSEIVVEYDKAATLWSLHEKIKQMEVAVEEA 120

Query: 282  DASLSKLQGSQLNCYKDMDDKHKTLR------KQLSDYHAKIL-------YCLDELGLIC 328
              S S+    Q    +D   K +  +      +  SD  A ++       Y L ELG  C
Sbjct: 121  AQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWC 180

Query: 329  AYEAVK---ICLEKVLKAQEECEIYRQSS--------LQCKYFLEEVLHVIGSALPLADK 377
            AY+  +   + L+   +A  + ++  Q S        LQC+   E  +    +  P  + 
Sbjct: 181  AYKVAQSFLMALQSDERANYQLDVKFQESYLEKVVSLLQCQ-LTEGAVTDKDTKSPENEN 239

Query: 378  IFLDFGFD------------------------YSKAVDLGYISTKLHELLQLFLSFGKST 413
                 G D                           AV  G ++ K+  L+++ L +  + 
Sbjct: 240  GVAQAGSDPDDIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLVKILLKYQHTE 299

Query: 414  QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473
                IIFVER++AA V+ +   ++P L+ +  A L G   S +  T ++Q + +  FR G
Sbjct: 300  DFRAIIFVERVVAALVLPKVFAELPSLSFVRCASLIGHNNSQEMRTSQMQ-DTIAKFRDG 358

Query: 474  KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQ 533
            +V LL AT V EEG+ +  C+ VIRFDL KTV +YIQSRGRAR+  S +ILM+ERGNL  
Sbjct: 359  RVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSH 418

Query: 534  RNKLFDIIRSERSVTDTALSRD-----PEACFLKACTYVKTKSYIVESTGASVTTDSSVN 588
               L +   SE ++   A+ R       +   L +   V    Y VESTGA V+ +S+V 
Sbjct: 419  GAFLRNARNSEETLRREAIERTDLSHLKDTSRLISVDSVPGTVYQVESTGAIVSLNSAVG 478

Query: 589  LIHRYCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKNL 643
            LIH YC  LPSD+Y   +P F  +  E+      Y C+L LPSN PF+ + GP   +  L
Sbjct: 479  LIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPSNVPFEKLEGPLCSSMRL 538

Query: 644  SKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPI 703
            ++Q VCL AC+KLH++GA  D LLP      E   + + +E  P  GT + +E +     
Sbjct: 539  AQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEREQVDQNDEGEPLPGTARHREFYPEGVA 598

Query: 704  RALSGRW-------GEKCGVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDND 748
              L G W             +LH Y +   C          +T++ S F +L  +ELD +
Sbjct: 599  NILQGEWILCGRDGWNNSNKLLHLYMYAVKCVNSGASKDPFLTQV-SEFAVLFGNELDAE 657

Query: 749  VGNFELELYLVSKTV-KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGS 807
            V +  ++L++    + KA++   G + +  +Q++  K F     + +   L V  + S  
Sbjct: 658  VLSMSMDLFIARTIITKASLVFRGPIDITENQLASLKSFHVRLMSIV---LDVDVEPS-- 712

Query: 808  REFFLKRETNSLWSPSYMYLLLPL---EIVNTFGDGSWRI--------NWSGINPCASVV 856
                      + W P+  YL +P+   + VN   +  W +         WS  NP     
Sbjct: 713  ---------TTPWDPAKAYLFVPMVGDKFVNPIKEIDWDLVENVIRTDVWS--NPLQRAR 761

Query: 857  EFI-------------KEKSFLGAAQCNNNGGNSSP-------------CRTS---PCKT 887
              +             +E  F         G  S P              + S   P + 
Sbjct: 762  PDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRA 821

Query: 888  GCHGKDV------IHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPF---DG 938
            G   + V      + +A+  V A+ L   +V A H+G+ + +  I  + +AE+ F   +G
Sbjct: 822  GVEIQKVELPKGKLMMADSYVGAEELVGRIVTAAHSGKRFYVDSIRYDMTAENSFPRKEG 881

Query: 939  NTDD-DSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMN 997
                 +  ++ +Y+ +KYG+ L+   QPL+R +      NLL    +   S +G    + 
Sbjct: 882  YLGPLEYSSYADYYKQKYGVELMFKQQPLIRGRGVSYCKNLLSPRFEHSDSNEGESEEIL 941

Query: 998  TKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHI 1057
             K    +V +PPEL +   +P S+V+    LPS+M+R+ES++LA QL++ I     ++ +
Sbjct: 942  DKT--YYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDII-----HYSV 994

Query: 1058 PSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1117
            P+  ILEALT   C E+F  ER ELLGD+ LK+ VS  LFL YP+KHEGQL+  R   V 
Sbjct: 995  PALKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVS 1054

Query: 1118 NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDT 1177
            N  L++    + LQ YI+   F P RW APG L   PV  E   D      D   F Q+ 
Sbjct: 1055 NMVLYQYALIKGLQSYIQADRFAPSRWAAPGVL---PVFDEDTKDG-----DSSLFDQEK 1106

Query: 1178 KVVVGKP----CDMG-----------------HRWMGSKTIADCAEALIGAYYVGGGLIA 1216
             ++  KP     D G                 +R + SKT+AD  EALIG YYV GG  A
Sbjct: 1107 SLIENKPKVDHADDGYEDDEIEDGELESDSSSYRVLSSKTLADVVEALIGIYYVEGGKTA 1166

Query: 1217 ALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAIT 1276
            A ++M+W+GI  + +   +D  I  +++   + R  +   +E  +  +F  + LL EAIT
Sbjct: 1167 ANHLMRWIGIKVEFDHEEIDSAIRPSNVPESILRSIDFDALEGALNIKFQDRGLLVEAIT 1226

Query: 1277 HASVQE-------------------------FYCYQN----------------------- 1288
            HAS                            F+ Y N                       
Sbjct: 1227 HASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVA 1286

Query: 1289 ----LYKHLQHCSTLLLSQITEYVK----SFPKPGETTDSGPSMKAPKALGDLLESIVGA 1340
                L+ HL+H S+ L  QI ++V+       KPG  +      KAPK LGD++ESI GA
Sbjct: 1287 VNHKLHVHLRHGSSALEKQIRDFVREVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGA 1346

Query: 1341 VLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVH 1400
            + +D+  +   VW++F+P+L P+VTP+ L + P+REL E C      ++   T  G +  
Sbjct: 1347 IFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKATRSGNLAT 1406

Query: 1401 AELRLQLKDVLLVGEGQERSRKAAKGKAASQ---LLKKLEVCEKR 1442
             E+ +   D + VG  Q   +K A+  AA     +LK  E  E +
Sbjct: 1407 VEVFI---DGVQVGVAQNPQKKMAQKLAARNALVILKDKETAEAK 1448


>gi|359476600|ref|XP_002269915.2| PREDICTED: endoribonuclease Dicer homolog 2-like [Vitis vinifera]
          Length = 1394

 Score =  587 bits (1513), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 449/1425 (31%), Positives = 703/1425 (49%), Gaps = 192/1425 (13%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI-KSNGFKKLIIFLAPTVHL 105
            R YQ++  E A ++NTI  LETG+GKT+IA+ML++  A  + K + F  + +FL P V L
Sbjct: 25   RSYQIEALEKAIKQNTIVFLETGSGKTLIAIMLLRYYAHLLRKPSPF--IAVFLVPKVVL 82

Query: 106  VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            V QQ + +++HTD +V  Y+G  GVD WD+  W+KE +K++VLVMTP ILL+ LR +F  
Sbjct: 83   VPQQAEAVKMHTDLKVGTYWGDMGVDFWDAATWRKEQDKHEVLVMTPAILLNGLRHSFFK 142

Query: 166  LDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSSAM 220
            LD++  ++ DECHHA G  PY  IMKEFYH+     + N P++FGMTASP+  KGV+  M
Sbjct: 143  LDMIKVLIFDECHHARGKDPYACIMKEFYHEQVRSNNSNLPRIFGMTASPIKTKGVNDLM 202

Query: 221  DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS---DLKGKLEVS 277
              +  I ELE+ ++S+++T   +  +  FVP +      Y       +   ++  +LE+ 
Sbjct: 203  HSKNMI-ELENLMNSKIYTSVSEAVLAEFVPFSTPKLTHYKDKDIPSALFENVAHQLEIL 261

Query: 278  WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKI-- 335
             +K++ SL  L          M+   ++ RK++S   +  L+CL++LGL  A +A +   
Sbjct: 262  KNKYEHSLESLNL--------MESTKESARKKISKLFSAFLFCLNDLGLWLALKAAEFSF 313

Query: 336  CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            C +  +    + ++  +  +  K F ++   VI + LP +D+  L  G D     + G++
Sbjct: 314  CDDMDICCWGQLDLSGEEII--KNFNKDAYKVISTYLP-SDRE-LSVGDDLEADAESGFL 369

Query: 396  STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH-LTVAYLTGSTTS 454
            +TK+  L+   L +     + CI+FVER+I A V+++ + K+          Y+ G+ + 
Sbjct: 370  TTKVICLVGSLLQYRHLKNLRCIVFVERVITAIVLQKLLSKLLPKLSGWEAGYIAGNASQ 429

Query: 455  VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
            + + + +VQ  ++E FR G VN++ +T ++EEG+ V +C+ VIRFD   TV S+IQSRGR
Sbjct: 430  LQSQSRRVQNALVEEFRKGMVNVIVSTSILEEGLDVQSCNLVIRFDPSATVCSFIQSRGR 489

Query: 515  ARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIV 574
            AR  NS ++LM++ G+ K  ++L   + S + + + +L      C     +    + Y V
Sbjct: 490  ARMQNSDYLLMVKSGDDKTLSRLRTYLDSGKVMREESLRNASLPCAPLKSSLDDEEFYWV 549

Query: 575  ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIV 634
            EST A VT  SS+ L++ YC  LPSD Y+ P P  +    ++   C +  P + P QT+ 
Sbjct: 550  ESTRAIVTLSSSIGLLYFYCSRLPSDGYFKPTP--RCSINQDMGTCTIYHPKSCPIQTV- 606

Query: 635  GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLP---GAGT 691
                 N    KQ+ CLEAC++LH+ GAL D+L+P +    E   I  ++E++P      T
Sbjct: 607  -SVRGNIKTLKQIACLEACKELHKAGALTDNLVPQI---VEEEAIVAQDENMPYDDEQAT 662

Query: 692  TKRKELHGTT---PIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDND 748
                EL   +   P+          C +I    K+ +  S       G VL + SEL+ D
Sbjct: 663  YYPPELINPSLKDPVTPY------HCYLIELDQKYEYEVSP-----QGIVLAVRSELEYD 711

Query: 749  VGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKS------ 802
            VGN   +L +   T+  +++  G +HL A+Q+   + FQ      L  +   K       
Sbjct: 712  VGNVNFDLQVDRGTMTVSMNYVGVIHLTAEQVLMCRKFQITLLRVLIDRAIDKGVFDRYD 771

Query: 803  -KSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKE 861
              +    ++ +   TNS   PS                    ++W     C   V F  E
Sbjct: 772  LGNDQMVDYLMLPSTNSREIPSI-------------------VDWK----CLGSVFFSHE 808

Query: 862  KSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIY 921
             +       +N+ G   P               +H  +G V +  LK+ +V   HT + Y
Sbjct: 809  NA-------SNHMGCFFP--------------RMHTKSGFVCSCTLKNSIVYTPHTSQFY 847

Query: 922  SIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVN 981
             I  I+   +  S F    +    T+  Y+  ++GI L   G+ LL+ ++     N L  
Sbjct: 848  CITGILGELNGNS-FLSLKNGGLLTYKEYYRLRHGIELQFDGEKLLKGRRMFVVQNYLQR 906

Query: 982  FNDGGGSGKGSKSGMNTKKPQMHVHMPPELLV--RVDVPISVVKSLYLLPSVMQRLESLM 1039
                    +  K   NT      V +PPEL V     + IS++ S  L+PS+M R+ESL+
Sbjct: 907  CRQ-----QKEKELSNTT-----VELPPELCVIFMSPISISIIYSFSLIPSIMHRIESLL 956

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            LA  L+     + +   IP+  +LEA+TT  C E F +E LE LGDS LKYA S  LF T
Sbjct: 957  LAVNLKNIHLNYCKQNDIPTFKVLEAITTKHCQEGFHLESLETLGDSFLKYAASQQLFKT 1016

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCEC 1159
            +   HEG LS ++   + N++L KLG DRKL G+IR+ +FDP++W+  G  S   V  E 
Sbjct: 1017 FQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNESFDPKKWIIAGDQSRSHVFGE- 1075

Query: 1160 GVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALY 1219
                       +  +   K+ V +      R + SK IAD  EALIGA+   GG  AAL 
Sbjct: 1076 -----------ELLSSTRKIYVSE-----RRKLKSKRIADVVEALIGAFLSTGGETAALI 1119

Query: 1220 MMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
             M+WLGI+ D           +      + R   +  +ES + Y F    LL EA+TH S
Sbjct: 1120 FMRWLGINVDFV-----KVPYKRDFPVILKRHVNVSYLESILNYSFRDPSLLVEALTHGS 1174

Query: 1280 VQ-----------EFY------------------------------------CYQN---- 1288
                         EF                                     CY      
Sbjct: 1175 YMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPGMSPGLLTDLRSASVNNDCYAQSAVK 1234

Query: 1289 --LYKHLQHCSTLLLSQITEYVKSFPK-PGETTDSGPSMKA-PKALGDLLESIVGAVLID 1344
              L++H+ H S  L   I   V +F K P E+T    S  + PK LGD++ES+ GA+L+D
Sbjct: 1235 AKLHQHILHSSQELHRHIVVTVGNFDKLPVESTFGWESESSFPKVLGDVIESLAGAILVD 1294

Query: 1345 TKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVK 1389
            +  N + V++  +P+L P++TP+ ++L P REL ELC    Y +K
Sbjct: 1295 SDYNKEVVFQSIRPLLEPLITPETVKLHPARELGELCQKEHYDIK 1339


>gi|334187796|ref|NP_001190348.1| dicer-like protein 4 [Arabidopsis thaliana]
 gi|332005448|gb|AED92831.1| dicer-like protein 4 [Arabidopsis thaliana]
          Length = 1688

 Score =  586 bits (1511), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 481/1682 (28%), Positives = 763/1682 (45%), Gaps = 284/1682 (16%)

Query: 45   IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
            I R YQ+++ + A   N I  L TG GKT IAVMLI ++   + S   K + IFLAPTV 
Sbjct: 123  IARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPK-KSVCIFLAPTVA 181

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LV QQ  VI    +F+V  + G K + +  S+ W++EI  N+                F+
Sbjct: 182  LVEQQAKVIADSVNFKVAIHCGGKRIVKSHSE-WEREIAANE--------------HCFI 226

Query: 165  SLDIVCFIVIDECHHAT--GNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMD 221
             ++ +  ++ DECHHA    NHPY +IMK FY  +S  +P++FGMTASPVV KG   + +
Sbjct: 227  KMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRPRIFGMTASPVVGKGSFQSEN 286

Query: 222  CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281
                I+ LE+ L+++V+++E   +++ FV S      +Y  +    S        S  ++
Sbjct: 287  LSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALSDASQ-------STIRY 339

Query: 282  DASLSKLQGSQLNCYKDMDDKHKT-----LRKQLSDYHAKILYCLDELGLICAYEAVKIC 336
            +  L  ++   L   K + D H+T     +++ L   H  ++Y L  LGL  A +A KI 
Sbjct: 340  ENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYTLLNLGLWGAIQAAKIQ 399

Query: 337  LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALP----LADKIFLDFGFDYSKAVDL 392
            L      Q+E       S  C  +L      + S +      +D + L        A+  
Sbjct: 400  LNSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENASDLLSL-------AALKE 452

Query: 393  GYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGST 452
               S KL +L+++   F     + CIIFV RI+ A+ +   +  +  L      +L G +
Sbjct: 453  PLFSRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLS 512

Query: 453  TSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
            + + +++ +  + +L+ F+  ++NLL AT V EEG+ +  C  VIR+DLP+TV+S+IQSR
Sbjct: 513  SGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSR 572

Query: 513  GRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSY 572
            GRAR   S++  +++ GN K+ + + +   +E  +      R  E    + C  +  + Y
Sbjct: 573  GRARMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRSSE----ETCPRLDEELY 628

Query: 573  IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE--AYECELTLPSNAPF 630
             V  TGA ++  SS++L+++YC  LP D+++ PKP F++K  +E     C +TLP+NAP 
Sbjct: 629  KVHETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRITLPANAPI 688

Query: 631  QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKK--NESLPG 688
              I      +   +K+  CL+A  +LH +G LND LLP  ++  E+ L   +   +++ G
Sbjct: 689  SEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDELSDDEFDFDNIKG 748

Query: 689  AGTTKRKELHGTTPIRALSGRWGEKCGVI-LHAYKFNFACSIVTEIYSGFVLLIESELDN 747
             G ++        P+     +W      + LH+Y   F       IY  F   ++S L  
Sbjct: 749  EGCSRGDLYEMRVPV-LFKQKWDPSTSCVNLHSYYIMFVPHPADRIYKKFGFFMKSPLPV 807

Query: 748  DVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLF--GKL---FVK 801
            +    +++L+L   ++V   +  SG    D D++  A+ FQE+    LF  G+L   FV 
Sbjct: 808  EAETMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLFERGELIPDFVP 867

Query: 802  SKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKE 861
                      L+ + +S  S S  YLLLPL + +  G+    ++W  I  C         
Sbjct: 868  ----------LELQDSSRTSKSTFYLLLPLCLHD--GESVISVDWVTIRNCL-------- 907

Query: 862  KSFLGAAQCNNNGGNSSPCRTSPC--------KTGCHGKDVIHLANGSVDAKNLKDMVVL 913
                           SSP   +P          +G H K    LANG  +  ++K+ +V 
Sbjct: 908  ---------------SSPIFKTPSVLVEDIFPPSGSHLK----LANGCWNIDDVKNSLVF 948

Query: 914  AIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSH 973
              ++ + Y + +I +  +  SP     +  +K+ V    + YG+ L HP QPLLR+K   
Sbjct: 949  TTYSKQFYFVADICHGRNGFSPV---KESSTKSHVESIYKLYGVELKHPAQPLLRVKPLC 1005

Query: 974  NPHNLLVNFNDGGGSGKGSKSGMNTK-KPQ----MHVHMPPEL--LVRVDVPISVVKSLY 1026
            +  NLL N              M T  +PQ      + +PPEL  L    +   +  SL 
Sbjct: 1006 HVRNLLHN-------------RMQTNLEPQELDEYFIEIPPELSHLKIKGLSKDIGSSLS 1052

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNF-HIPSSLILEALTTLGCCESFSMERLELLGD 1085
            LLPS+M R+E+L++A +L+  ++        +    +LEALTT  C E  S+ERLE+LGD
Sbjct: 1053 LLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLEALTTEKCHERLSLERLEVLGD 1112

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV 1145
            + LK+AVS HLFL +    EG+L+ RRS  V NS L +L   + LQ YIRD A DP ++ 
Sbjct: 1113 AFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYIRDQALDPTQFF 1172

Query: 1146 APGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP----CDMGHRWMGSKTIADCA 1201
            A G       PC    D +    +     +D  ++        C  GH W+  KTIAD  
Sbjct: 1173 AFGH------PCRVTCDEV-ASKEVHSLNRDLGILESNTGEIRCSKGHHWLYKKTIADVV 1225

Query: 1202 EALIGAYYVGGGLIAALYMMKWLGIDADLE-VSLVDDCITRASLRSYVPRI--NEIKDIE 1258
            EAL+GA+ V  G   A+  +KW+G++ D E + + D CI     R Y+P    N ++ +E
Sbjct: 1226 EALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQDACIAS---RRYLPLTTRNNLETLE 1282

Query: 1259 SKIGYEFTVKFLLQEAITHASVQEF--YCYQNL--------------------------- 1289
            +++ Y+F  K LL +A  H S       CYQ L                           
Sbjct: 1283 NQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQ 1342

Query: 1290 ----------------------YKHLQHCSTLLLSQITEYVKSF--PKPGETTDS-GPSM 1324
                                   K    C ++ L ++ E   +F    P  +  S GP  
Sbjct: 1343 LTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGP-- 1400

Query: 1325 KAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSL 1384
            + PK LGDL+ES +GA+ +D   NL+ VW +    L P+     L++ P++ELIELC S 
Sbjct: 1401 RCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSY 1460

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV------ 1438
             +  + + T K      EL++      L      R+++    KAA  ++  L+       
Sbjct: 1461 KWDREISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMITNLKAHENITT 1520

Query: 1439 ---CEKRISKGASNTGKL----------------------------GDDCRQTT---KED 1464
                E  +  G  N  KL                            G+  R ++   +  
Sbjct: 1521 SHPLEDVLKNGIRNEAKLIGYNEDPIDVVDLVGLDVENLNILETFGGNSERSSSYVIRRG 1580

Query: 1465 LPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGP-----RTSLFQLCK 1519
            LP+ PS    +  + AI                       +K GGP     ++ L + C 
Sbjct: 1581 LPQAPSKTEDRLPQKAI-----------------------IKAGGPSSKTAKSLLHETCV 1617

Query: 1520 TMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGN--VECNGDPRAD 1577
               W  P FE  E             E      SFV K+ L + +  N  +EC G+ RA 
Sbjct: 1618 ANCWKPPHFECCEE------------EGPGHLKSFVYKVILEVEDAPNMTLECYGEARAT 1665

Query: 1578 KK 1579
            KK
Sbjct: 1666 KK 1667


>gi|224068194|ref|XP_002302679.1| dicer-like protein [Populus trichocarpa]
 gi|222844405|gb|EEE81952.1| dicer-like protein [Populus trichocarpa]
          Length = 1817

 Score =  583 bits (1504), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 480/1588 (30%), Positives = 723/1588 (45%), Gaps = 267/1588 (16%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL V + AK++NTIA LETGAGKT+IAV+LI+ I   ++    K L +FL P V LV
Sbjct: 289  RQYQLDVLDQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKILAVFLVPKVPLV 348

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +QQ +VIR    ++V  Y G  G D WD++ WQ+E     VLVMT QILL+ LR + + +
Sbjct: 349  YQQAEVIR-ERGYQVGHYCGEMGQDFWDTRRWQREFETKQVLVMTAQILLNILRHSIIKM 407

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            + +  +++DECHHA   HPY+ +M EFYH +  + +P VFGMTASPV  KGVSS +DC  
Sbjct: 408  EAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAI 467

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
            +I  LES LDS V TI+D+ E+E  VP   E    YD++    S  +   ++  +  +A+
Sbjct: 468  KIRNLESKLDSIVCTIKDRKELEKHVPMPAEVVVEYDKAASLWSLHEQIKQIEAAVEEAA 527

Query: 285  LSKLQGSQLNCYKDMDDKHKTLRKQL--------SDYHAKIL-------YCLDELGLICA 329
             S  + S+       D   K   +Q+        SD  A ++       Y L +LG  CA
Sbjct: 528  QSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGDLGQWCA 587

Query: 330  YEAVK---ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
            Y+  +     L+   +A  + ++  Q S   +  L     +   A+   D    D G D 
Sbjct: 588  YKVAQSFLTALQNDERANYQLDVKFQESYLERVVLLLQCQLTEGAVTDKDTKVSDNGNDN 647

Query: 387  SKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE-RFVKKVPFLTHLTV 445
             +    G+   +  EL    +  G          V+ II A V + +   KV  L  + +
Sbjct: 648  IQD-GPGFDEIEEGELPDSHVVSGGE-------HVDVIIGAAVADGKVTPKVQSLIKVLL 699

Query: 446  AYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTV 505
             Y                 +  E FR     ++F   V            V    LPK  
Sbjct: 700  RY-----------------QHTEDFRA----IIFVERV------------VAALVLPK-- 724

Query: 506  SSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRD-----PEACF 560
                 SRGRAR+  S +ILM+ERGNL     L +   SE ++   A+ R       +   
Sbjct: 725  -----SRGRARKPGSDYILMVERGNLSHGAFLRNARNSEETLRKEAIERTDLSHLKDTSR 779

Query: 561  LKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE---- 616
            L A   +    Y VESTGA V+ +S+V L+H YC  LPSD+Y   +P F  +  E+    
Sbjct: 780  LIAVDSIPGTVYQVESTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPGFIMEKHEKPGGP 839

Query: 617  -AYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSE 675
              Y C+L LP NAPF+ + GP           VCL AC+KLH++GA  D LLP      E
Sbjct: 840  TEYSCKLQLPCNAPFEELEGPA----------VCLAACKKLHEMGAFTDMLLPDKGSEEE 889

Query: 676  NNLISKKNESLPGAGTTKRKELHGTTPIRALSGRW------GEKCGVILHAYKFNFAC-- 727
             + + + +E  P  GT + +E +     + L G W      G     +LH Y +   C  
Sbjct: 890  KDKVDQNDEGEPLPGTARHREFYPEGVAKTLQGEWILCGRDGCNNSKVLHLYLYGVRCLN 949

Query: 728  ------SIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTV-KATVSSSGQVHLDADQM 780
                    +T++ S F +L  +ELD +V +  ++L++    + KA++   G++ +   Q+
Sbjct: 950  IGTSNDPFLTQV-SNFAVLFGNELDAEVLSMSMDLFIARTMITKASLVFRGRIPITESQL 1008

Query: 781  SKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPL---EIVNTF 837
            +  K F     + +   L V  + S            + W P+  YL +P+   + V+  
Sbjct: 1009 ASLKNFHVRLMSIV---LDVDVEPS-----------TTPWDPAKAYLFVPMVSDKSVDPI 1054

Query: 838  GDGSWRI--NWSGINPCASVVEFIKEKSFLGAAQCNNNGG---------------NSSPC 880
             +  W +  N  G +  ++ ++  +   +LG  +    G                   P 
Sbjct: 1055 KEIDWDLVENIIGTDAWSNRLQRARPDVYLGTNERTLGGDRREYGFGKLRHGIAFGQKPH 1114

Query: 881  RTSPCKTGCHGKDVIH--------------------------LANGSVDAKNLKDMVVLA 914
             T   +      DV+                           +A+  V+A  L   +V A
Sbjct: 1115 PTYGIRGAVAQFDVVKASGLIPKRGWDATETQKLELTKGKLMMADTCVNADALMGRIVTA 1174

Query: 915  IHTGRIYSIVEIVNNSSAESPFDGNTDD----DSKTFVNYFSEKYGIVLIHPGQPLLRLK 970
             H+G+ + +  I  + +AE  F          +  ++ +Y+ +KYG+ L    QPLLR +
Sbjct: 1175 AHSGKRFYVDSICYDMTAEISFPRKEGYLGPLEYSSYADYYKQKYGVELKFKQQPLLRGR 1234

Query: 971  QSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPS 1030
                  NLL    +   S +G       K    +V +PPEL +   +P S+V+    LPS
Sbjct: 1235 GVSYCKNLLSPRFEHSDSNEGDAEENLDKT--YYVFLPPELCLVHPLPGSLVRGAQRLPS 1292

Query: 1031 VMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKY 1090
            +M+R+ES++LA +L++ IN     + +P+S ILEALT   C E+F  ER ELLGD+ LK+
Sbjct: 1293 IMRRVESMLLAVELKDIIN-----YPVPASKILEALTAASCQETFCYERAELLGDAYLKW 1347

Query: 1091 AVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQL 1150
             VS  LFL YP+KHEGQL+  R   V N  L++   ++ LQ YI+   F P RW APG L
Sbjct: 1348 VVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKGLQSYIQADRFAPSRWAAPGVL 1407

Query: 1151 SLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGH--------------------- 1189
               PV  E   D      D   F Q+ K +      M H                     
Sbjct: 1408 ---PVFDEETKDG-----DSYIFDQE-KSLAEDRTGMNHLDDGYENEIEDGELESDASSY 1458

Query: 1190 RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP 1249
            R + SKT+AD  EALIG YYV GG  A  ++MKW+GI  + +   +D      ++   V 
Sbjct: 1459 RVLSSKTLADVVEALIGVYYVEGGKNAVNHLMKWIGIQVEFDHEEIDGASRPFNVPESVL 1518

Query: 1250 RINEIKDIESKIGYEFTVKFLLQEAITHASVQE-------------------------FY 1284
            R  +   +E  +  +F  + LL EAITHAS                            F+
Sbjct: 1519 RSVDFDTLEGALDIKFNDRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFF 1578

Query: 1285 CYQN---------------------------LYKHLQHCSTLLLSQITEYVKSFP----K 1313
             Y N                           L+ HL+H S+ L  QI ++V+       K
Sbjct: 1579 TYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALEKQIRDFVREVQDELLK 1638

Query: 1314 PGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPP 1373
            P   +      KAPK LGD++ESI GA+ +D+  +   VW++F+P+L P+VTP+ L + P
Sbjct: 1639 PVFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHP 1698

Query: 1374 LRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLL 1433
            +REL E C      ++   T  G +   E+ +   D + VG  Q   +K A+  AA   L
Sbjct: 1699 VRELQERCQQQAEGLEYKATRSGNLATVEVFI---DGVQVGVAQNPQKKMAQKLAARNAL 1755

Query: 1434 KKLEVCEKRISKGASN-TGKLGDDCRQT 1460
              L+  E   +K  S+  GK   +  QT
Sbjct: 1756 VVLKEKETAEAKEKSDENGKKKRNGNQT 1783


>gi|296089027|emb|CBI38730.3| unnamed protein product [Vitis vinifera]
          Length = 1474

 Score =  581 bits (1497), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 409/1236 (33%), Positives = 625/1236 (50%), Gaps = 154/1236 (12%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL V E AK+RNTIA LETGAGKT+IAV+LI+ +   ++    K L +FL P V LV
Sbjct: 254  RQYQLDVLEQAKKRNTIAFLETGAGKTLIAVLLIRSVFNDLQGQNKKLLAVFLVPKVPLV 313

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +QQ +VIR  T ++V  Y G  G D WD++ WQ+E     VLVMT QILL+ LR + + +
Sbjct: 314  YQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFETKHVLVMTAQILLNILRHSIIKM 373

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            + +  +++DECHHA   HPY+ +M EFYH +  + +P VFGMTASPV  KGVSS +DC  
Sbjct: 374  EAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAI 433

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVSWSKFD 282
            +I  LES LDS V TI+D+ E+E  VP   E    YD++    S  +   ++E++  +  
Sbjct: 434  KIRNLESKLDSIVCTIKDRKELEKHVPMPSEIVVEYDKAATLWSLHEQIKQMELAVEEAA 493

Query: 283  ASLSKLQGSQLNCYKDMDDKHKTLR------KQLSDYHAKIL-------YCLDELGLICA 329
             S S+    Q    +D   K +  +      +  SD  A ++       Y L ELG  CA
Sbjct: 494  QSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 553

Query: 330  YEAVK---ICLEKVLKAQEECEIYRQSS--------LQCKYF-------------LEEVL 365
            ++  +     L+   +A  + ++  Q S        LQC+                E  +
Sbjct: 554  FKVAQSFLTALQNDERANYQLDVKFQESYLNKVVSLLQCQLSEGAVSDKDKKVVDTETSV 613

Query: 366  HVIGSA--------LPLADKIFLDFGFDY--SKAVDLGYISTKLHELLQLFLSFGKSTQV 415
             V GSA        LP +  +      D     AV  G ++ K+  L+++ L + ++   
Sbjct: 614  SVDGSAIEEIEEGELPNSHVVSGGEHVDVIIGAAVADGKVTPKVQSLVKILLKYQQTEDF 673

Query: 416  LCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475
              IIFVER++AA V+ +   ++P L+ +  A L G   S +  T ++Q + +  FR G+V
Sbjct: 674  RAIIFVERVVAALVLPKVFAELPSLSFIKCASLIGHNNSQEMRTCQMQ-DTIAKFRDGRV 732

Query: 476  NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRN 535
             LL AT V EEG+ +  C+ VIRFDL KTV +YIQSRGRAR+  S +ILM+ERGNL    
Sbjct: 733  TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHGA 792

Query: 536  KLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS------YIVESTGASVTTDSSVNL 589
             L +   SE ++   A+ R  +   LK  + + +        Y VESTGA V+ +S+V L
Sbjct: 793  FLRNARNSEETLRKEAIER-TDLSHLKGTSRLISVDTTPGTVYQVESTGAIVSLNSAVGL 851

Query: 590  IHRYCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKNLS 644
            IH YC  LPSD+Y   +P F  +  E+      Y C+L LP NAPF+ + GP   +  L+
Sbjct: 852  IHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSMRLA 911

Query: 645  KQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIR 704
            +Q VCL AC+KLH++GA  D LLP      E   + + +E  P  GT + +E +      
Sbjct: 912  QQAVCLAACKKLHEMGAFTDMLLPDKGSGEEGEKVDQNDEGDPLPGTARHREFYPEGVAN 971

Query: 705  ALSGRW------GEKCGVILHAYKF-----NFACS---IVTEIYSGFVLLIESELDNDVG 750
             L G W      G     ++H Y +     NF  S    +T++ S FV+L  +ELD +V 
Sbjct: 972  VLQGEWILLGKDGCNSSRLVHLYMYAVKCVNFGSSKDPFLTQV-SDFVVLFGNELDAEVL 1030

Query: 751  NFELELYLVSKTV-KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSRE 809
            +  ++L++    V KA++   G + +   Q++  K F     + +   L V  + S    
Sbjct: 1031 SISMDLFIARTMVTKASLVFWGPIDITESQLASLKSFHVRLMSIV---LDVDVEPS---- 1083

Query: 810  FFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGI------NPCASVVEFIKEKS 863
                    + W P+  YL +P+ + +   D   +I+W  +      +  ++ ++  +   
Sbjct: 1084 -------TTPWDPAKAYLFVPV-VGDKSEDPIRQIDWDIVERIIRTDGWSNPLQRARPDV 1135

Query: 864  FLGAAQCNNNG------------GNSSPCRTSPCKTGCHG----------------KDVI 895
            +LG  +    G            G +   ++ P   G  G                ++ I
Sbjct: 1136 YLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPT-YGIRGAVAQYDVVRASGLVPNRETI 1194

Query: 896  HLANG-------------SVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD 942
             +  G                A++L   +V A H+G+ + +  +  + +AE+ F      
Sbjct: 1195 EMMKGEDLTKGKLMMAGTQTSAEDLVGRIVTAAHSGKRFYVDSVRYDMTAENSFPRKEGY 1254

Query: 943  ----DSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNT 998
                +  ++ +Y+ +KYG+ LI+  QPL+R +      NLL    +   + +G      T
Sbjct: 1255 LGPLEYSSYADYYRQKYGVELIYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESD--ET 1312

Query: 999  KKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIP 1058
                 +V +PPEL     +P S+V+S   LPS+M+R+ES++LA QL++ I     N+ +P
Sbjct: 1313 LDKTYYVFLPPELCFVHPLPGSLVRSAQRLPSIMRRVESMLLAVQLKDVI-----NYPVP 1367

Query: 1059 SSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118
            ++ ILEALT   C E+F  ER ELLGD+ LK+ VS  LFL YP+KHEGQL+  R   V N
Sbjct: 1368 AAKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1427

Query: 1119 STLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRP 1154
              L++    + LQ YI+   F P RW APG L   P
Sbjct: 1428 MVLYQSALCKGLQSYIQADRFAPSRWAAPGVLPTAP 1463


>gi|145338056|ref|NP_566199.4| protein dicer-like 2 [Arabidopsis thaliana]
 gi|334185051|ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana]
 gi|322518659|sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName:
            Full=Dicer-like protein 2; Short=AtDCL2
 gi|332640403|gb|AEE73924.1| protein dicer-like 2 [Arabidopsis thaliana]
 gi|332640405|gb|AEE73926.1| protein dicer-like 2 [Arabidopsis thaliana]
          Length = 1388

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 445/1429 (31%), Positives = 688/1429 (48%), Gaps = 216/1429 (15%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK----LIIFLAPT 102
            R YQ++  E A ++NTI  LETG+GKT+IA+ML++  A       F+K      +FL P 
Sbjct: 25   RSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYL-----FRKPSPCFCVFLVPQ 79

Query: 103  VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
            V LV QQ + +++HTD +V  Y+G  GVD WDS  W++E++K +VLVMTP ILLDALR +
Sbjct: 80   VVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDALRHS 139

Query: 163  FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVS 217
            FLSL ++  +++DECHHA G HPY  IM+EFYHK     + N P++FGMTAS V  KG  
Sbjct: 140  FLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKG-- 197

Query: 218  SAMDCE-GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG---SDLKGK 273
              +D    +I ELE+ ++S+V+T E+++ +  FVP +  S ++Y   K      + L  K
Sbjct: 198  ENLDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRASLVEK 257

Query: 274  LEVSWSKFDASLSKLQGSQLNCYKDMDDKH-KTLRKQLSDYHAKILYCLDELGLICAYEA 332
            LE    K   SL  L         D++     ++ K+L    + + YCLD+LG++ A +A
Sbjct: 258  LERLTIKHRLSLGTL---------DLNSSTVDSVEKRLLRISSTLTYCLDDLGILLAQKA 308

Query: 333  VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL-----PLADKIFLD---FGF 384
             +                  S+ Q   FL   L++   AL       A + FL     G 
Sbjct: 309  AQ----------------SLSASQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGL 352

Query: 385  DYSKA-----VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-P 438
            ++S A      + G ++ K   L++  L +     + CIIFV+R+I A V+E  + ++ P
Sbjct: 353  NWSVANINGNAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILP 412

Query: 439  FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
               +    Y+ G+ + +   T K Q E++E FR G VN++ AT ++EEG+ V +C+ VIR
Sbjct: 413  NCNNWKTKYVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIR 472

Query: 499  FDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEA 558
            FD    + S+IQSRGRAR  NS +++M+E G+L  +++L   +   + + + +L      
Sbjct: 473  FDPASNICSFIQSRGRARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHS--- 529

Query: 559  CFLKACTYVKTKS----YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA 614
              L  C  +   S    + VESTGA+VT  SSV+LI+ YC  LPSD+Y+ P P F     
Sbjct: 530  --LVPCPPLPDDSDEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKD 587

Query: 615  EEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPS 674
            + +  C L LP + P + +      N  + KQ VCL+AC +LH+VGAL+DHL+P +    
Sbjct: 588  QGS--CTLYLPKSCPVKEV--KAEANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVAE 643

Query: 675  ENNLISKKNESLPGAGTTKRKELHGTTPIR---ALSGRWGEKCGVILHAYKFNFACSIVT 731
                +S+K E +         + +   P      L  ++  +     H Y      +   
Sbjct: 644  T---VSQKLEKI---------QYNTEQPCYFPPELVSQFSAQPETTYHFYLIRMKPNSPR 691

Query: 732  EIYSGFVLL-IESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELF 790
              +   VLL     L++D+GN    L     T+  T+S  G  HL  +++   + FQ   
Sbjct: 692  NFHLNDVLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITL 751

Query: 791  FNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGIN 850
            F  L     V++         L+         +  YLL+P    +T    +  I+W  I 
Sbjct: 752  FRVLLDH-SVENLMEALNGLHLRDGV------ALDYLLVP----STHSHETSLIDWEVIR 800

Query: 851  PCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDM 910
                    + EK       C+ NG +                 ++H  +G      +++ 
Sbjct: 801  SVNLTSHEVLEKH----ENCSTNGASR----------------ILHTKDGLFCTCVVQNA 840

Query: 911  VVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLK 970
            +V   H G +Y    ++NN +  S        D +T++ Y+ E++GI L    +PLL  +
Sbjct: 841  LVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGD-QTYIEYYEERHGIQLNFVDEPLLNGR 899

Query: 971  QSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLL 1028
                 H+ L            +K     +  +  V +PPEL   +  PISV  + S   +
Sbjct: 900  HIFTLHSYL----------HMAKKKKEKEHDREFVELPPELCHVILSPISVDMIYSYTFI 949

Query: 1029 PSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVL 1088
            PSVMQR+ESL++A  L++ I       +IP+  +LEA+TT  C + F +E LE LGDS L
Sbjct: 950  PSVMQRIESLLIAYNLKKSI----PKVNIPTIKVLEAITTKKCEDQFHLESLETLGDSFL 1005

Query: 1089 KYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPG 1148
            KYAV   LF      HEG LS ++   + N  L + G  +KLQG+IRD  F+P+ W+ PG
Sbjct: 1006 KYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPG 1065

Query: 1149 QLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAY 1208
            Q             +    L      +   + V        R +  K++AD  E+LIGAY
Sbjct: 1066 Q------------SSAAYSLVNDTLPESRNIYVA-----SRRNLKRKSVADVVESLIGAY 1108

Query: 1209 YVGGGLIAALYMMKWLGIDADLEVSLVD-DCITRASLRSYVPRINEIKDIESKIGYEFTV 1267
               GG +AAL  M W+GI  D   + +  D   +A       ++  +  +ES + Y F  
Sbjct: 1109 LSEGGELAALMFMNWVGIKVDFTTTKIQRDSPIQAE------KLVNVGYMESLLNYSFED 1162

Query: 1268 KFLLQEAITHASVQ-----------EFY-------------------------------- 1284
            K LL EA+TH S             EF                                 
Sbjct: 1163 KSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSAS 1222

Query: 1285 ----CY------QNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSG--PSMKAPKALGD 1332
                CY       NL+KH+ + S  L   I+  V  F +    +  G    +  PK LGD
Sbjct: 1223 VNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGD 1282

Query: 1333 LLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELC 1381
            ++ES+ GA+ +D+  N + V+   KP+L  ++TP+ ++L P+REL ELC
Sbjct: 1283 VIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELC 1331


>gi|94450854|gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana]
          Length = 1386

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 445/1429 (31%), Positives = 689/1429 (48%), Gaps = 216/1429 (15%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK----LIIFLAPT 102
            R YQ++  E A ++NTI  LETG+GKT+IA+ML++  A       F+K      +FL P 
Sbjct: 23   RSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYL-----FRKPSPCFCVFLVPQ 77

Query: 103  VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
            V LV QQ + +++HTD +V  Y+G  GVD WDS  W++E++K +VLVMTP ILLDALR +
Sbjct: 78   VVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDALRHS 137

Query: 163  FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVS 217
            FLSL ++  +++DECHHA G HPY  IM+EFYHK     + N P++FGMTAS V  KG  
Sbjct: 138  FLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKG-- 195

Query: 218  SAMDCE-GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG---SDLKGK 273
              +D    +I ELE+ ++S+V+T E+++ +  FVP +  S ++Y   K      + L  K
Sbjct: 196  ENLDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRASLVEK 255

Query: 274  LEVSWSKFDASLSKLQGSQLNCYKDMDDKH-KTLRKQLSDYHAKILYCLDELGLICAYEA 332
            LE    K   SL  L         D++     ++ K+L    + + YCLD+LG++ A +A
Sbjct: 256  LERLTIKHRLSLGTL---------DLNSSTVDSVEKRLLRISSTLTYCLDDLGILLAQKA 306

Query: 333  VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL-----PLADKIFLD---FGF 384
             +                  S+ Q   FL   L++   AL       A + FL     G 
Sbjct: 307  AQ----------------SLSASQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGL 350

Query: 385  DYSKA-----VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-P 438
            ++S A      + G ++ K   L++  L +     + CIIFV+R+I A V+E  + ++ P
Sbjct: 351  NWSVANINGNAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILP 410

Query: 439  FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
               +    Y+ G+ + +   T K Q E++E FR G VN++ AT ++EEG+ V +C+ VIR
Sbjct: 411  NCNNWKTKYVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIR 470

Query: 499  FDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEA 558
            FD    + S+IQSRGRAR  NS +++M+E G+L  +++    +   + + + +L      
Sbjct: 471  FDPASNICSFIQSRGRARMQNSDYLMMVESGDLLTQSRSMKYLSGGKRMREESLDHS--- 527

Query: 559  CFLKACTYVKTKS----YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA 614
              L  C  +   S    + VESTGA+VT  SSV+LI+ YC  LPSD+Y+ P P F     
Sbjct: 528  --LVPCPPLPDDSDEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKD 585

Query: 615  EEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPS 674
            + +  C L LP + P + +      N  + KQ VCL+AC +LH+VGAL+DHL+P +    
Sbjct: 586  QGS--CTLYLPKSCPVKEV--KAEANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVAE 641

Query: 675  ENNLISKKNESLPGAGTTKRKELHGTTPIR---ALSGRWGEKCGVILHAYKFNFACSIVT 731
                +S+K E +         + +   P      L  ++  +     H Y      +   
Sbjct: 642  T---VSQKLEKI---------QYNTEQPCYFPPELVSQFSAQPETTYHFYLIRMKPNSPR 689

Query: 732  EIYSGFVLL-IESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELF 790
             ++   VLL     L++D+GN    L     T+  T+S  G  HL  +++   + FQ   
Sbjct: 690  NLHLNDVLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTREEVLFCRRFQITL 749

Query: 791  FNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGIN 850
            F  L     V++         L+         +  YLL+P    +T    +  I+W  I 
Sbjct: 750  FRVLLDH-SVENLMEALNGLHLRDGV------ALDYLLVP----STHSHETSLIDWEVIR 798

Query: 851  PCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDM 910
                    + EK       C+ NG +                 ++H  +G      +++ 
Sbjct: 799  SVNLTSHEVLEKH----ENCSTNGASR----------------ILHTKDGLFCTCVVQNA 838

Query: 911  VVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLK 970
            +V   H G +Y    ++NN +  S        D +T++ Y+ E++GI L    +PLL  +
Sbjct: 839  LVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGD-QTYIEYYEERHGIQLNFVDEPLLNGR 897

Query: 971  QSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLL 1028
                 H+ L            +K     +  +  V +PPEL   +  PISV  + S   +
Sbjct: 898  HIFTLHSYL----------HMAKKKKEKEHDREFVELPPELCHVILSPISVDMIYSYTFI 947

Query: 1029 PSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVL 1088
            PSVMQR+ESL++A  L++ I       +IP+  +LEA+TT  C + F +E LE LGDS L
Sbjct: 948  PSVMQRIESLLIAYNLKKSI----PKVNIPTIKVLEAITTKKCEDQFHLESLETLGDSFL 1003

Query: 1089 KYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPG 1148
            KYAV   LF      HEG LS ++   + N  L + G  +KLQG+IRD  F+P+ W+ PG
Sbjct: 1004 KYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPG 1063

Query: 1149 QLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAY 1208
            Q             +    L      +   + V        R +  K++AD  E+LIGAY
Sbjct: 1064 Q------------SSAAYSLVNDTLPESRNIYVA-----SRRNLKRKSVADVVESLIGAY 1106

Query: 1209 YVGGGLIAALYMMKWLGIDADLEVSLVD-DCITRASLRSYVPRINEIKDIESKIGYEFTV 1267
               GG +AAL  M W+GI  DL  + +  D   +A       ++  +  +ES + Y F  
Sbjct: 1107 LSEGGELAALMFMNWVGIKVDLTTTKIQRDSPIQAE------KLVNVGYMESLLNYSFED 1160

Query: 1268 KFLLQEAITHASVQ-----------EFY-------------------------------- 1284
            K LL EA+TH S             EF                                 
Sbjct: 1161 KSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSAS 1220

Query: 1285 ----CY------QNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSG--PSMKAPKALGD 1332
                CY       NL+KH+ + S  L   I+  V  F +    +  G    +  PK LGD
Sbjct: 1221 VNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGD 1280

Query: 1333 LLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELC 1381
            ++ES+ GA+ +D+  N + V+   KP+L  ++TP+ ++L P+REL ELC
Sbjct: 1281 VIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELC 1329


>gi|357448551|ref|XP_003594551.1| Endoribonuclease Dicer [Medicago truncatula]
 gi|355483599|gb|AES64802.1| Endoribonuclease Dicer [Medicago truncatula]
          Length = 1418

 Score =  578 bits (1490), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 428/1427 (29%), Positives = 663/1427 (46%), Gaps = 200/1427 (14%)

Query: 40   NSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFL 99
            N++ F  R YQL+  E A R NTI  LETG+GKT+IA+ML++  A  ++      + +FL
Sbjct: 58   NALPF-ARSYQLEALEKAIRENTIVYLETGSGKTLIAIMLLRSYAYHLRKPS-PYIAVFL 115

Query: 100  APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
             P V LV QQ + +R HTD ++  Y+G  GVD WD   W+ E+ K++VLVMTP ILL  L
Sbjct: 116  VPKVVLVSQQAEALRNHTDLKIGMYWGDMGVDYWDGDVWKGEMEKHEVLVMTPAILLSCL 175

Query: 160  RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-----DNKPKVFGMTASPVVRK 214
            R +F+ L ++  +++DECHHA G HPY  IM EFYH          P++FGMTASP+  K
Sbjct: 176  RHSFIKLSMIKVLIMDECHHAAGRHPYACIMTEFYHHQLRSGITELPRIFGMTASPIKSK 235

Query: 215  GVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
              +S       I EL + + S+V+T      +  F+P++    RFY  +           
Sbjct: 236  AANSESTLSKSIRELMTLMHSKVYTCVCDAVISQFIPTSTPKFRFYRDNG---------- 285

Query: 275  EVSWSKFD---ASLSKLQGSQLNCYKDMD---DKHKTLRKQLSDYHAKILYCLDELGLIC 328
             +S++ F+     L++L+     C    D      ++  K+++      ++CL+ELG+  
Sbjct: 286  -ISYTLFEELAKRLNELKQQHERCITSSDLTKSAVQSAHKKIARIFDASIFCLEELGIWL 344

Query: 329  AYEAVKICLEKVLKAQEECEIYRQSSLQ-CKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
            A +A     E +   + E  ++  S  Q  K F    +  + S +P   +       + +
Sbjct: 345  ALKAA----ESLSSIEIETFLWGISGDQIVKKFSSATMMTLQSCIPSDPR--WTIADNMN 398

Query: 388  KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK-VPFLTHLTVA 446
              +++G +++K+  L++  L +   T++ CI+FVER+IAA V+E  +   +P        
Sbjct: 399  SNLEMGLLTSKVCCLIECLLEYRGLTEMRCIVFVERVIAAIVLEVLLNALLPKYNSWRAK 458

Query: 447  YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
            ++ G+ + +   T K+Q E++E FR G VN++ AT ++EEG+ V +C+ VIRFD   TV 
Sbjct: 459  FIAGTGSKLQNQTRKIQNEIVEEFRKGLVNIIVATSILEEGLDVQSCNLVIRFDPSPTVC 518

Query: 507  SYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTY 566
            S++QSRGRAR  NS +ILM++ G+   R++L   +   + +   +L      C       
Sbjct: 519  SFVQSRGRARMRNSDYILMVKSGDAVTRSRLEKYLDGGQMMRKESLRYSSLPCESLESDR 578

Query: 567  VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPS 626
               ++Y V ST A V   S + LI+ YC  LPSD Y+ P P++      + ++  L LP 
Sbjct: 579  FNEQAYRVASTEAVVNLSSGITLIYLYCSRLPSDGYFKPTPMW------DKHKGILYLPK 632

Query: 627  NAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESL 686
            + P   I      NK L K + CLEAC++LH++GAL D+L+PS         I  +   +
Sbjct: 633  SCPIHAI-HVQGDNKFL-KNIACLEACKQLHKIGALTDNLVPS---------IVVEEAEV 681

Query: 687  PGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAY----KFNFACSIVTEIYSGFVLLIE 742
               G     E   +     L          I + Y    K NF+  I  +      L   
Sbjct: 682  EEFGNEPYSEEQPSYVPFELVNHMSNNSSTIYYCYLIELKQNFSYDITVQ---DIFLATR 738

Query: 743  SELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKS 802
             ELD ++G  + ++     ++   +   G ++L  DQ+   K FQ      L        
Sbjct: 739  VELDPEIGCMQFDMCFDRGSLAVNLRYRGNINLSPDQVLLCKRFQVSILGILMNSKM--D 796

Query: 803  KSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEK 862
            K S S ++ L+ +          YLLLP   +       W +  S I+P           
Sbjct: 797  KESFSEKYSLEDDLE------IDYLLLPSIAIEETPSVDW-LTISSIHP----------- 838

Query: 863  SFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIY- 921
                  QC  +  N    +   C  GC                 L++ ++   H GR Y 
Sbjct: 839  ---SKIQCRYHAANILTEKGFAC--GC----------------ILRNALICTPHNGRTYI 877

Query: 922  --SIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL 979
               ++E+  NS  E       D +  T+  YF +K+GI L    Q LL+ +     H   
Sbjct: 878  TAGMMELDGNSPLEV-----GDGEVTTYKKYFGQKHGIQLRFEHQRLLKAR-----HVFP 927

Query: 980  VNFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLES 1037
            V  N   G  +    G+N  K    V +PPEL  ++   VP+S + +   +PS+M RLES
Sbjct: 928  VK-NYCHGYSQAKDRGLNVSK--TFVELPPELCSIIMSPVPLSTLYTFSFIPSIMHRLES 984

Query: 1038 LMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLF 1097
            L+ A   +     +     I +  +LEA+TT  C E+F  E LE LGDS LKYAVS  LF
Sbjct: 985  LLGAYNFKRMHLDYCPQNKIQTFKVLEAMTTKSCKETFHYESLETLGDSFLKYAVSQQLF 1044

Query: 1098 LTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPC 1157
              Y   HEG LS +R   +CN+ L KLG D +L G+IR+  FDP+ W+ PG         
Sbjct: 1045 NMYQNHHEGLLSVKREKIICNAALSKLGCDFRLPGFIRNDPFDPKTWIIPG--------- 1095

Query: 1158 ECGVDTLEVPLDGKFFTQDTKVVVGKPC-DMGHRWMGSKTIADCAEALIGAYYVGGGLIA 1216
                      +  + F  +  V  G+     G R +  K +AD  EALIGA+   GG +A
Sbjct: 1096 ----------VKSESFKLEETVFNGRKIYTRGDRKLKRKVVADVVEALIGAFLSAGGEMA 1145

Query: 1217 ALYMMKWLGIDADLEVSLVDDCITRASLRSYVP---RINEIKDIESKIGYEFTVKFLLQE 1273
            AL  M W+GI  +  +   +        R ++     +  ++ +ES + Y F  + LL E
Sbjct: 1146 ALLFMDWIGIKVNFNIIPYE--------RQFIACPDNLVNVRFLESLLKYSFRDRSLLVE 1197

Query: 1274 AITHASVQ---EFYCYQ------------------------------------------- 1287
            A+TH S        CYQ                                           
Sbjct: 1198 ALTHGSYMLPDVPRCYQRLEYLGDSVLDYLITMHLYRVYPGMSPGQLTDMRSASVNNDCY 1257

Query: 1288 -------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKA-PKALGDLLESIVG 1339
                    L+KH+ H S  L   I   +  F     ++    S    PK LGD++ES+ G
Sbjct: 1258 AMSAIKVQLHKHVLHASQELHKHIVATLDKFDDQSSSSFGWESEATFPKVLGDIIESLAG 1317

Query: 1340 AVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGY 1386
            A+ +D+  + + VW+  +P+L P+VTPD L + P+REL ELC  + Y
Sbjct: 1318 AIFVDSGYDKEAVWKSIRPLLEPLVTPDTLTIHPIRELNELCQKMNY 1364


>gi|115453927|ref|NP_001050564.1| Os03g0583900 [Oryza sativa Japonica Group]
 gi|122246906|sp|Q10HL3.1|DCL2A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2a; AltName:
            Full=Dicer-like protein 2a; Short=OsDCL2a
 gi|50399921|gb|AAT76309.1| putative RNA helicase/RNAseIII protein, C-terminus truncated [Oryza
            sativa Japonica Group]
 gi|108709535|gb|ABF97330.1| Type III restriction enzyme, res subunit family protein, expressed
            [Oryza sativa Japonica Group]
 gi|113549035|dbj|BAF12478.1| Os03g0583900 [Oryza sativa Japonica Group]
 gi|215701504|dbj|BAG92928.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1410

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 434/1429 (30%), Positives = 685/1429 (47%), Gaps = 208/1429 (14%)

Query: 45   IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
            + R YQL+  E A R NT+A LETG+GKT+IAVML++  A  ++    ++  +FL PTV 
Sbjct: 33   MARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVV 92

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LV QQ  V+  HTD  V+++ G  GVD WD+  W+ ++   +VLVMTPQILLD LR +F 
Sbjct: 93   LVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFF 152

Query: 165  SLDIVCFIVIDECHHATGNHPYTKIMKEFYH------KSDNKPKVFGMTASPVVRKGVSS 218
             L  +  ++ DECHHA GN PY  I KEFYH       SD  P++FGM+AS +  K ++ 
Sbjct: 153  RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKDLN- 211

Query: 219  AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL---- 274
              +   QISE+E+ ++S+V+T++ ++ +  ++P A      +D S    S+L   +    
Sbjct: 212  PHNYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVDFDDSNI-SSELHANILSCL 270

Query: 275  -EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
              ++    +A   KL GS L          +  ++++S  H   +YCL  LG+  A +A 
Sbjct: 271  NRLNKKHIEALDRKLHGSSL----------ENAKQRISKLHHTFVYCLYNLGVWLAAKAA 320

Query: 334  KICLEKVLKAQEECEIYRQSSLQCKYFLEEVL--HVIGSALPLADKI------FLD---F 382
                        E + Y ++SL    F  E L  +V G     ++++      FL     
Sbjct: 321  ------------EVQSYEENSLS---FWGETLDKNVEGFIRNYSEEVHRELSCFLKNGHI 365

Query: 383  GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
            G  +      G ++ K+H L++  L +     + CI+FVER+I + V+E  +  +  ++ 
Sbjct: 366  GEKFPADSQDGILTPKVHCLIRTLLQYRHMQDLRCIVFVERVITSIVLEHLLSSIHQMSG 425

Query: 443  LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
              V ++ GS   + + + K   E++ESFR GKV+++ AT ++EEG+ VP+C+ VIRFD  
Sbjct: 426  WNVKHMAGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPS 485

Query: 503  KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLK 562
             TV S+IQSRGRAR  NS ++L++ RG+++ +      + S + + + +L     +C   
Sbjct: 486  ATVCSFIQSRGRARMENSDYLLLVGRGDVEAQTNAEKFLASGQIMREESLRLGSISCQPL 545

Query: 563  ACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECEL 622
              T  +   Y VEST A VT +SSV LIH +C  LPSD+Y+ P P F    A     C L
Sbjct: 546  ENTLCEDTYYRVESTRAIVTLNSSVPLIHFFCSKLPSDEYFNPLPRFDIDKASGT--CTL 603

Query: 623  TLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKK 682
             LP ++P QT+        ++ K+ VCL+AC++LH +GAL D LLP ++ P +       
Sbjct: 604  HLPKSSPVQTV--NVEGEGSILKETVCLKACQELHAIGALTDSLLPELDVPCDEE----- 656

Query: 683  NESLPGAGTTKRKELHGTTPIRALSG-RWGEKCGVILHAYKFNFACSIVTEIYSGFVLLI 741
                P      + E     P   +   R   + G I + YK +      T   +  +L +
Sbjct: 657  ----PDIVVENKIEQPSYFPEEFVDNWRSFSRLG-IYYCYKISLEGCPKTASPTDILLAL 711

Query: 742  ESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVK 801
            + +L +D  +   +L         T+   G +HL+ +Q+  A+ FQ    + L G   ++
Sbjct: 712  KCDLGSDFTSSSFKLPGGQDNASVTMKYVGIIHLNQEQVIIARRFQTTILSFLIGDDHLE 771

Query: 802  SKSSGSREFFLKRETNSLWSP-SYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIK 860
              S+G + F      + +  P   +YLLLPL         S RI+W  +           
Sbjct: 772  V-SNGIKYF------HEMQVPIGVVYLLLPLV--------SGRIDWCSMK---------- 806

Query: 861  EKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRI 920
               F  +     N  + + C +      C   D++   +G      LK+ +V   H    
Sbjct: 807  ---FSSSPIYEANNKHMTHCHS------CKDIDLLQTKDGPFCRCILKNSIVCTPHNNIF 857

Query: 921  YSIVEIVNNSSAESPFDGNT-----DDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNP 975
            Y I   ++        D N+     D    T+ +YF  ++G+ L    QPLL    + + 
Sbjct: 858  YVISGFLD-------LDANSCLPQHDGTVVTYKDYFKTRHGLTLTFENQPLL----AGSK 906

Query: 976  HNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLLPSVMQ 1033
            H  + NF     S K  + G      +  V +PPEL   +  P+S   +     +PS+M 
Sbjct: 907  HVKVRNFLHNCYSKKEKEPG-----DRYSVELPPELCRIIMSPVSANNLHIFSYVPSIMF 961

Query: 1034 RLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVS 1093
            R++ ++L+ +L+ ++    + F +P   ILEALTT  C E FS E LE LGDS LKY  +
Sbjct: 962  RIQCMLLSVKLKVQLGPTVQQFDVPVLKILEALTTKKCQEEFSQESLETLGDSFLKYVTT 1021

Query: 1094 CHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLR 1153
             HLF  Y  +HEG L+  +   + N+ L +L     L GYI    F+PR W+        
Sbjct: 1022 RHLFSEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIHAEEFNPRDWI-------- 1073

Query: 1154 PVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM-GHRWMG--SKTIADCAEALIGAYYV 1210
             +PC   +D  E          + K+    P  M   R M   SK IAD  EALIGAY  
Sbjct: 1074 -IPC---LDYDE--------RDNKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLS 1121

Query: 1211 GGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFL 1270
              G  AA  +MK LG++ +    +  +         ++     ++ +E  +GY+F    L
Sbjct: 1122 TAGEKAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFI----NVRSLEGMLGYKFNDSLL 1177

Query: 1271 LQEAITHASVQ------------------------EFY---------------------- 1284
            L EA+TH S Q                        E+Y                      
Sbjct: 1178 LLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNN 1237

Query: 1285 -CYQN------LYKHLQHCSTLLLSQITEYV----KSFPKPGETTDSGPSMKAPKALGDL 1333
             CY +      L KH+ H S+ L  +++ Y+    +SF  P    ++G  +  PK LGD+
Sbjct: 1238 NCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWEAGIGL--PKVLGDV 1295

Query: 1334 LESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCD 1382
            +ESI GA+ +D+K + + VWR  K +L P+ TP+ +E  P++ L E CD
Sbjct: 1296 IESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCD 1344


>gi|379987678|gb|AFD22619.1| dicer-like 2 protein [Nicotiana attenuata]
          Length = 1403

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 450/1475 (30%), Positives = 696/1475 (47%), Gaps = 184/1475 (12%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL+  E A +RNTI  LETG+GKT+IA+ML++  A  ++      + +FL PTV LV
Sbjct: 23   RSYQLEALETALKRNTIVYLETGSGKTLIAIMLLRSYAYLLRKPS-PYIAVFLVPTVVLV 81

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
             QQ D + +HTD +V +Y+G  GVD WD+  WQK++  ++VLVMTP ILL ALR +FL +
Sbjct: 82   AQQGDALIMHTDLKVGKYWGEMGVDYWDAATWQKQVVDHEVLVMTPAILLAALRHSFLKI 141

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSSAMD 221
            +++  ++ DECH+A G HPY  IMKEFYH+     S   P++FGMTASP+  KG SS   
Sbjct: 142  EMIKVLIFDECHNARGKHPYACIMKEFYHRQLTLESAQLPRIFGMTASPIKTKG-SSVEF 200

Query: 222  CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW--- 278
                I +LE+ + S+V+T   +  +  ++P +    + Y        D+   L VS    
Sbjct: 201  TWKMIRDLENLMHSKVYTCVSEFCLAKYIPFSTPKLKIYRH-----VDIPCTLFVSLVSD 255

Query: 279  -----SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
                  K++ S+SK   S L+          +  K+LS  ++  ++CL ELG+  A++A 
Sbjct: 256  LIRLKDKYEDSISKSSLSDLSA--------GSAXKRLSKLYSSFIFCLSELGVWLAFKAA 307

Query: 334  KICLEKVLKAQEECEIYRQSSLQ------CKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
            +        + EE + +    L        + F      V  +  P      L  G D  
Sbjct: 308  EFL------SSEETDFFSWGELDVCAQRIVRNFSLGASKVFSAHXPSGSHWSL--GGDIH 359

Query: 388  KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK-VPFLTHLTVA 446
              VD GY+++K++ L++  L +     + CIIFVERII A V+     + +P L+     
Sbjct: 360  ANVDAGYLTSKVNSLIESLLEYRDLKDLRCIIFVERIITAIVLRSLXNELLPDLSGWKTE 419

Query: 447  YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
            Y  G ++ + + +  VQ +++E FR G VN++ AT ++EEG+ V +C+ VIRFD   TV 
Sbjct: 420  YTAGHSSLLQSQSRNVQNKIVEEFRKGVVNIIVATSILEEGLDVQSCNLVIRFDPSATVC 479

Query: 507  SYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTY 566
            S+IQSRGRAR  NS FILM+  G+     ++ + ++S   +   +L      C       
Sbjct: 480  SFIQSRGRARMQNSHFILMVGSGDASTLTRMQNYMQSGEIMRQESLRHASIPCSPLDDEL 539

Query: 567  VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPS 626
                 Y VE+TGA VT  SSV+L++ YC  LPSD YY P P  +    +E   C L LP 
Sbjct: 540  HDEPYYKVETTGAVVTLSSSVSLLYFYCSRLPSDGYYKPSP--RCAIEKETETCTLYLPK 597

Query: 627  NAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESL 686
            N P Q ++      K L KQL CLEAC++LH+ GAL D+L+P + E  E  +I +     
Sbjct: 598  NCPLQKVISVKGNTKIL-KQLACLEACKELHREGALTDNLVPDIVE--EEAIIKEL---- 650

Query: 687  PGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFAC-SIVTEIYSGFVLLIESEL 745
             G      +EL    P   L          + + Y+ +    S  +    G +L + + L
Sbjct: 651  -GCQIYTDEELKYFPP--ELVSHCANDTEAVYYCYEVDLQHDSYSSYQLCGIILAVRTRL 707

Query: 746  DNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSS 805
              D      +L +   ++   V+ SG V L ++++ + + FQ   F  L  +   K + +
Sbjct: 708  KFDDERLTFDLDVDKGSLLVQVNYSGVVRLTSEEVLRCQRFQVSLFRILLDRDLSKLEDA 767

Query: 806  GSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFL 865
                  L      + S    YLLLP    +     + +INW  +N      + + +K   
Sbjct: 768  ------LAAVQLPVGSAVSDYLLLP----SLGSTQNPQINWECVNSVLFPSQVLGDKHI- 816

Query: 866  GAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVE 925
                C +  G                K  ++   G V +  L++ +V   H G +Y I  
Sbjct: 817  ---DCCSTQGR---------------KRSVNTKTGVVCSCMLENSLVCTPHNGYVYCITG 858

Query: 926  IVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDG 985
             ++N    S  +  T  +S T++ Y+ +++ I L   G+ LLR K     HN L      
Sbjct: 859  FLDNLDCNSLLEQRT-GESITYIEYYKKRHRINLCFDGEQLLRGKHIFKVHNYL------ 911

Query: 986  GGSGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLMLASQ 1043
                +  +S       +  V +PPEL  ++   V IS + +   LPSVM R+ESL++AS 
Sbjct: 912  ----QRCRSQKAKDSTESSVELPPELCSIIMSPVSISTLFTYSYLPSVMHRVESLIMASN 967

Query: 1044 LRE--EINCHSRNFHIPSSLILEALTTLGCCESF---SMERLELLGDSVLKYAVSCHLFL 1098
            L+      C  ++F        + L      +SF    +  LE L  ++L+   SC   +
Sbjct: 968  LKRMHSYQCTQKHFLFQPLRFWKQLQQRNASKSFIWNHLRHLETLFSNMLR-VYSCSRLM 1026

Query: 1099 TYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCE 1158
                 HEG L+ +++  + N+ L KLG  RK+ G+IR   FD + W+ PG          
Sbjct: 1027 KI--HHEGLLTVKKNKIISNAALCKLGCARKIPGFIRSEPFDLKGWLIPG---------- 1074

Query: 1159 CGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAAL 1218
               D  +V    + F ++  +   K    G + + SK +AD  EALIGA+   GG +AAL
Sbjct: 1075 ---DNSQV----QNFDEELLMPSVKMYSRGRQKIKSKRVADVVEALIGAFLSSGGEVAAL 1127

Query: 1219 YMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHA 1278
              MKWLG+D D       D  T         ++  ++ +ES + Y+F    LL EA+TH 
Sbjct: 1128 SFMKWLGVDIDFV-----DAPTPRHFPMNAEKLVNVRYLESLLDYKFHDPSLLVEALTHG 1182

Query: 1279 SVQ-----------EFY------------------------------------CYQN--- 1288
            S             EF                                     CY     
Sbjct: 1183 SYMLPEIPRCYQRLEFLGDAVLDYAVTAHLYFKYPGLSPGFITDLRSASVNNECYAQAAV 1242

Query: 1289 ---LYKHLQHCSTLLLSQITEYVKSFPK--PGETTDSGPSMKAPKALGDLLESIVGAVLI 1343
               L+KH+ H S  L  QI   V +F K  P  T         PK LGD++ES+ GA+ +
Sbjct: 1243 KAGLHKHILHASQDLQRQIVNTVLNFEKLDPASTFGWESETTFPKVLGDVIESLAGAIFV 1302

Query: 1344 DTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMV-HAE 1402
            D+  N D V++  + +L P++TPD ++L P+REL ELCD  GY  K+N   +   V +  
Sbjct: 1303 DSGFNKDVVFQSVRTLLEPLITPDTVKLHPVRELSELCDQKGYIKKKNVVSRENGVAYIT 1362

Query: 1403 LRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
            + ++   V       ER +K A+  A   +LK L+
Sbjct: 1363 VEVEADGVSHKFTCSERDKKMAEKVACKNVLKLLK 1397


>gi|224101241|ref|XP_002312197.1| dicer-like protein [Populus trichocarpa]
 gi|222852017|gb|EEE89564.1| dicer-like protein [Populus trichocarpa]
          Length = 1468

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 467/1543 (30%), Positives = 718/1543 (46%), Gaps = 262/1543 (16%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL+  E A + NTI  LETG+GKT+IA+ML++  A  ++    + + +FL P V LV
Sbjct: 23   RSYQLEALEKALKHNTIVFLETGSGKTLIAIMLLRSYAYLLRKPS-RFIAVFLVPQVVLV 81

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
             QQ   + +HTD +V  Y+G  GVD W++  W+KEI K++VLVMTPQILL+ LR +F  L
Sbjct: 82   RQQAGAVEMHTDLKVGMYWGEMGVDFWNAATWKKEIEKHEVLVMTPQILLNGLRHSFFKL 141

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYH---KSDNK--PKVFGMTASPVVRKGVSSAMD 221
            D++  +++DECHH  G HPY  IM EF+H   KS +   P++FGMTASP+  KG +S + 
Sbjct: 142  DLIKVMIVDECHHTRGKHPYASIMTEFFHCELKSGHHDLPRIFGMTASPIKSKGANSELY 201

Query: 222  CEGQISELESTLDSQ--------------------------------------------- 236
               QI ELE  ++S+                                             
Sbjct: 202  YWQQIRELEDIMNSKLLSPFAFGSLLQDEDDPHGTFQMHSTNIHVISHSCSKVFENCIPG 261

Query: 237  ----VFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQ 292
                ++T   ++ +  F+P +     FY+  K         L+         L  L+   
Sbjct: 262  TRHMIYTCVSESALAEFIPFSTPKFLFYEHMKIPDGIFASLLK--------ELGNLRTKH 313

Query: 293  LNCYKDMDDKHK---TLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349
             +  + +D       ++  ++S  H+ +++CL+ELG+  A++A +     +     + + 
Sbjct: 314  EHMLEQLDLNESAAVSICNKISKVHSALMFCLEELGVWLAFQAAQF----LSHCDTDGDF 369

Query: 350  YRQSSLQC------KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELL 403
                 L        K F ++    I +    +D      G +    +  G +++K+  L+
Sbjct: 370  ISGGKLDVSGETIVKNFCQDASLAISNCF--SDGQECSIGDNIKAHLGAGLLTSKILCLV 427

Query: 404  QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-PFLTHLTVAYLTGSTTSVDALTPKV 462
            +  L +    ++ CI+FVER+I A V+E  + K+ P        Y+ G+ + + + T K+
Sbjct: 428  ESLLQYRDLKEIRCIVFVERVITAIVLESLLSKLLPKHGSWKTKYIAGNNSGLQSQTRKI 487

Query: 463  QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
            Q E++E FR G VN++ AT ++EEG+ V +C+ VIRFD   TVSS+IQSRGRAR  NS +
Sbjct: 488  QNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPSATVSSFIQSRGRARMQNSDY 547

Query: 523  ILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVT 582
            +LM++RG+     +L + + S   +   +L      C       +  + Y VE TGA V+
Sbjct: 548  LLMVKRGDFSTHARLENYLASGDIMRRESLRHASIPCS-PLLDELDDEFYRVEGTGAVVS 606

Query: 583  TDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKN 642
              SSV+LI+ YC  LPSD Y+ P P  +    +E   C L LP ++P QTI      N  
Sbjct: 607  LSSSVSLIYFYCSRLPSDGYFKPAP--RCIIDKETMTCTLHLPKSSPVQTIC--VQGNIK 662

Query: 643  LSKQLVCLEACEKLHQVGALNDHLLPSV---EEPSENNLISKKNESLPGAGTTKRKELHG 699
              KQ  CLEAC+KLH  GAL D+L+P +   E  +E+    + ++  P        EL  
Sbjct: 663  TLKQKACLEACKKLHVSGALTDNLVPDIVMEEAVAEDVGNERYDDEQP---IYLPPELVS 719

Query: 700  TTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDV---GNFELEL 756
              P R L  ++   C +I      NFA  I        VL++ +EL++DV     F+LE 
Sbjct: 720  RGP-RNLKTKY--YCYLI--ELNQNFAYDIPVH---DVVLVVRTELESDVIRSMGFDLEA 771

Query: 757  YLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSK---------SSGS 807
                 TV   +   G + L+   +   + FQ   F  L      K K         S   
Sbjct: 772  ERGLLTV--NLRYIGDIDLERVLVLLCRRFQITLFKVLLDHSVNKLKEVLEGLDLGSGAE 829

Query: 808  REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVV-EFIKEKSFLG 866
             ++FL     S   PS                    INW+   P +SV+  +  E+ F  
Sbjct: 830  IDYFLLPAFRSCSQPS--------------------INWA---PISSVLFSYKNEEHF-- 864

Query: 867  AAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEI 926
               C+ NG                   V+    G V A  L++ +V   H G IY I  +
Sbjct: 865  --NCSRNGN----------------AHVVQTKCGPVCACVLQNSLVCTPHNGNIYCITGV 906

Query: 927  VNNSSAESPFDGNTDDDSKTFVNYFSEK------------YGIVLIHPGQPLLRLKQSHN 974
              + +  S      D  + T+  YF+++            +GI L+   +PLL+ K    
Sbjct: 907  FEDLNGNSLLKMG-DGGAITYKEYFAKRPMSDLKLTLDFRHGIQLLFNREPLLKGKHIFP 965

Query: 975  PHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVM 1032
             HNLL          +  K+  NT     HV +PPEL  ++   + IS + S   +PS+M
Sbjct: 966  VHNLL-----NRCRKQKEKASKNT-----HVELPPELCEIILSPISISTLYSYTFIPSIM 1015

Query: 1033 QRLESLMLASQLREEINCHS-RNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYA 1091
             RLESL++A  L++  + H  ++ +IPS  +LEA+TT  C E+F++E LE LGDS LKYA
Sbjct: 1016 HRLESLLIAVNLKKMHSDHYLQHVNIPSMKVLEAITTNKCQENFNLESLETLGDSFLKYA 1075

Query: 1092 VSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLS 1151
             S  LF  Y   HEG LS ++   + N+ L + G + KLQG+IR+ +FDP+ W+ PG   
Sbjct: 1076 ASQQLFKIYQNHHEGLLSFKKDKIISNAALCRRGCNHKLQGFIRNESFDPKLWIIPGG-- 1133

Query: 1152 LRPVPCECGVDTL-EVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYV 1210
                  + G D L E PL     ++  K+ +      G R + SKTIAD  EALIGAY  
Sbjct: 1134 ------KLGSDFLSEEPL-----SKGRKIYI-----RGRRKVKSKTIADVVEALIGAYLS 1177

Query: 1211 GGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFL 1270
             GG + AL  M W+GI  D   +  +  I   +      +   ++ +ES + Y F    L
Sbjct: 1178 TGGEVTALLFMDWIGIKVDFMNTPYERHIQLQA-----EKFVNVRYLESLLNYSFNDPSL 1232

Query: 1271 LQEAITHASV---QEFYCYQNL----------------YK-------------------- 1291
            L EA+TH S    +   CYQ L                YK                    
Sbjct: 1233 LVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITLHMYKEYPGMSPGLLTDLRSASVNN 1292

Query: 1292 --------------HLQHCSTLLLSQITEYVKSFPKPG-ETTDSGPSMKA-PKALGDLLE 1335
                          H+ H S  L   I   VK   +   E+T    S  A PK LGD++E
Sbjct: 1293 DCYALSAVKVGLDRHILHASHDLHKHIVATVKKIQEFSLESTFGWESETAFPKVLGDVIE 1352

Query: 1336 SIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGY-FVKENCTL 1394
            S+ GA+L+D+  N + V+   +P+L P++TP+ L L P+REL ELC    + + K   + 
Sbjct: 1353 SLAGAILVDSGYNKEVVFESIRPLLEPLITPETLRLQPVRELNELCQRQHFDYKKPIVSR 1412

Query: 1395 KGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
             G      + ++   ++         +  AK  A+ ++LK L+
Sbjct: 1413 NGRNASVTIEVEANGLIFKHTATVADKTTAKKLASKEVLKALK 1455


>gi|297735235|emb|CBI17597.3| unnamed protein product [Vitis vinifera]
          Length = 1340

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 426/1376 (30%), Positives = 669/1376 (48%), Gaps = 188/1376 (13%)

Query: 95   LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
            + +FL P V LV QQ + +++HTD +V  Y+G  GVD WD+  W+KE +K++VLVMTP I
Sbjct: 17   IAVFLVPKVVLVPQQAEAVKMHTDLKVGTYWGDMGVDFWDAATWRKEQDKHEVLVMTPAI 76

Query: 155  LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTAS 209
            LL+ LR +F  LD++  ++ DECHHA G  PY  IMKEFYH+     + N P++FGMTAS
Sbjct: 77   LLNGLRHSFFKLDMIKVLIFDECHHARGKDPYACIMKEFYHEQVRSNNSNLPRIFGMTAS 136

Query: 210  PVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS- 268
            P+  KG +S   C   + ELE+ ++S+++T   +  +  FVP +      Y       + 
Sbjct: 137  PIKTKGTTSTWSCGKNMIELENLMNSKIYTSVSEAVLAEFVPFSTPKLTHYKDKDIPSAL 196

Query: 269  --DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGL 326
              ++  +LE+  +K++ SL  L          M+   ++ RK++S   +  L+CL++LGL
Sbjct: 197  FENVAHQLEILKNKYEHSLESLNL--------MESTKESARKKISKLFSAFLFCLNDLGL 248

Query: 327  ICAYEAVKI--CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF 384
              A +A +   C +  +    + ++  +  +  K F ++   VI + LP +D+  L  G 
Sbjct: 249  WLALKAAEFSFCDDMDICCWGQLDLSGEEII--KNFNKDAYKVISTYLP-SDRE-LSVGD 304

Query: 385  DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH-L 443
            D     + G+++TK+  L+   L +     + CI+FVER+I A V+++ + K+       
Sbjct: 305  DLEADAESGFLTTKVICLVGSLLQYRHLKNLRCIVFVERVITAIVLQKLLSKLLPKLSGW 364

Query: 444  TVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK 503
               Y+ G+ + + + + +VQ  ++E FR G VN++ +T ++EEG+ V +C+ VIRFD   
Sbjct: 365  EAGYIAGNASQLQSQSRRVQNALVEEFRKGMVNVIVSTSILEEGLDVQSCNLVIRFDPSA 424

Query: 504  TVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKA 563
            TV S+IQSRGRAR  NS ++LM++ G+ K  ++L   + S + + + +L      C    
Sbjct: 425  TVCSFIQSRGRARMQNSDYLLMVKSGDDKTLSRLRTYLDSGKVMREESLRNASLPCAPLK 484

Query: 564  CTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELT 623
             +    + Y VEST A VT  SS+ L++ YC  LPSD Y+ P P  +    ++   C + 
Sbjct: 485  SSLDDEEFYWVESTRAIVTLSSSIGLLYFYCSRLPSDGYFKPTP--RCSINQDMGTCTIY 542

Query: 624  LPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKN 683
             P + P QT+      N    KQ+ CLEAC++LH+ GAL D+L+P +    E   I  ++
Sbjct: 543  HPKSCPIQTV--SVRGNIKTLKQIACLEACKELHKAGALTDNLVPQI---VEEEAIVAQD 597

Query: 684  ESLP---GAGTTKRKELHGTT---PIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGF 737
            E++P      T    EL   +   P+          C +I    K+ +  S       G 
Sbjct: 598  ENMPYDDEQATYYPPELINPSLKDPVTPY------HCYLIELDQKYEYEVSP-----QGI 646

Query: 738  VLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGK 797
            VL + SEL+ DVGN   +L +   T+  +++  G +HL A+Q+   + FQ      L  +
Sbjct: 647  VLAVRSELEYDVGNVNFDLQVDRGTMTVSMNYVGVIHLTAEQVLMCRKFQITLLRVLIDR 706

Query: 798  LFVKS-------KSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGIN 850
               K         +    ++ +   TNS   PS                    ++W    
Sbjct: 707  AIDKGVFDRYDLGNDQMVDYLMLPSTNSREIPSI-------------------VDWK--- 744

Query: 851  PCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDM 910
             C   V F  E +       +N+ G   P               +H  +G V +  LK+ 
Sbjct: 745  -CLGSVFFSHENA-------SNHMGCFFP--------------RMHTKSGFVCSCTLKNS 782

Query: 911  VVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLK 970
            +V   HT + Y I  I+   +  S F    +    T+  Y+  ++GI L   G+ LL+ +
Sbjct: 783  IVYTPHTSQFYCITGILGELNGNS-FLSLKNGGLLTYKEYYRLRHGIELQFDGEKLLKGR 841

Query: 971  QSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLV--RVDVPISVVKSLYLL 1028
            +     N L          +  K   NT      V +PPEL V     + IS++ S  L+
Sbjct: 842  RMFVVQNYLQRCRQ-----QKEKELSNTT-----VELPPELCVIFMSPISISIIYSFSLI 891

Query: 1029 PSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVL 1088
            PS+M R+ESL+LA  L+     + +   IP+  +LEA+TT  C E F +E LE LGDS L
Sbjct: 892  PSIMHRIESLLLAVNLKNIHLNYCKQNDIPTFKVLEAITTKHCQEGFHLESLETLGDSFL 951

Query: 1089 KYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPG 1148
            KYA S  LF T+   HEG LS ++   + N++L KLG DRKL G+IR+ +FDP++W+  G
Sbjct: 952  KYAASQQLFKTFQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNESFDPKKWIIAG 1011

Query: 1149 QLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAY 1208
              S   V  E            +  +   K+ V +      R + SK IAD  EALIGA+
Sbjct: 1012 DQSRSHVFGE------------ELLSSTRKIYVSE-----RRKLKSKRIADVVEALIGAF 1054

Query: 1209 YVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVK 1268
               GG  AAL  M+WLGI+ D           +      + R   +  +ES + Y F   
Sbjct: 1055 LSTGGETAALIFMRWLGINVDFV-----KVPYKRDFPVILKRHVNVSYLESILNYSFRDP 1109

Query: 1269 FLLQEAITHASVQ-----------EFY--------------------------------- 1284
             LL EA+TH S             EF                                  
Sbjct: 1110 SLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPGMSPGLLTDLRSASV 1169

Query: 1285 ---CYQN------LYKHLQHCSTLLLSQITEYVKSFPK-PGETTDSGPSMKA-PKALGDL 1333
               CY        L++H+ H S  L   I   V +F K P E+T    S  + PK LGD+
Sbjct: 1170 NNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVESTFGWESESSFPKVLGDV 1229

Query: 1334 LESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVK 1389
            +ES+ GA+L+D+  N + V++  +P+L P++TP+ ++L P REL ELC    Y +K
Sbjct: 1230 IESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARELGELCQKEHYDIK 1285


>gi|356533095|ref|XP_003535104.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max]
          Length = 1414

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 451/1508 (29%), Positives = 695/1508 (46%), Gaps = 229/1508 (15%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL+  + A R NTI  LETG+GKT+IAVML++  A  ++     ++ +FL P V LV
Sbjct: 29   RSYQLEALDNAIRENTIVYLETGSGKTLIAVMLLRSYAHHLRKPS-PQIAVFLVPKVVLV 87

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
             QQ + ++ HTD +V  Y+G  G+D WD+  W++E+ K +V VMTP ILL+ LR +FL L
Sbjct: 88   SQQAEAVKKHTDLKVGLYWGDMGIDFWDAATWKQEVQKYEVFVMTPAILLNCLRHSFLKL 147

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-----PKVFGMTASPVVRKGVSSAMD 221
            +++  +++DECHHA G HPY  IM EFYH   N      P++FGMTASP+  K  +  + 
Sbjct: 148  NLIKVLIMDECHHARGKHPYASIMTEFYHHQLNSGISDLPRIFGMTASPIKSKVGNCELS 207

Query: 222  CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG---SDLKGKLEVSW 278
                I +L + + S+V+T   +  +  F+P++    +FY  ++       DL  KL++  
Sbjct: 208  WSENIRKLMTLMHSKVYTCVSEAVLTEFIPTSTPKFKFYQGNEVQSVLFEDLAFKLKM-- 265

Query: 279  SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338
                  L +   S L          +  R++     + +++CLDELG+  A +A +    
Sbjct: 266  ------LKEQHESNLKSSDFTKSAAEFARRRTKKIFSALIFCLDELGVWLALKAAESL-- 317

Query: 339  KVLKAQEECEIY---RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
                +  + +++          K F+   +  + + LP   +  +     Y   V++  +
Sbjct: 318  ----SSNDIQLFSWGHSGDTVVKNFISAGVQTLKTYLPCGPQWSIGDNIKYD--VEMELL 371

Query: 396  STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK-VPFLTHLTVAYLTGSTTS 454
            S+K+  L+   L +   T + CIIFVER+I A V+   +   +P        ++ G    
Sbjct: 372  SSKVCCLIDSILEYRGLTDMRCIIFVERVITAVVLRDLLNTLLPKYNSWKTKFIAGQNFG 431

Query: 455  VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
            +   + K Q E++E FR G VN++ AT ++EEG+ V +C+ VIRFD   TV S+IQSRGR
Sbjct: 432  LQNQSRKKQNEIVEEFRMGLVNIIVATSILEEGLDVESCNLVIRFDPCHTVCSFIQSRGR 491

Query: 515  ARQHNSQFILMLERGNLKQRNKLF------DIIRSERSVTDTALSRDPEACFLKACTYVK 568
            AR  NS +ILM++ G+    ++L       DI+R E S+  ++L  DP    L+   + K
Sbjct: 492  ARMQNSDYILMVKSGDSVTCSRLAKYLASGDIMRKE-SLRHSSLPCDP----LEEDRFDK 546

Query: 569  TKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNA 628
             ++Y V ST A     SS++LIH YC  LP+D Y+  KP  ++          L LP + 
Sbjct: 547  -ETYRVASTEAFANLSSSISLIHLYCSRLPADGYF--KPTLRWDKETGT----LYLPKSC 599

Query: 629  PFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSV--EEPSENNLISKKNESL 686
            P Q I      +K + K + CLEAC++LH++GAL+D+L+P +  EE     L        
Sbjct: 600  PLQPI--RVEGDKKILKNIACLEACKQLHKIGALSDNLVPDIVMEEAEVEEL-------- 649

Query: 687  PGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAY--KFNFACSIVTEIYSGFVLLIESE 744
               G     E   T     L          + H Y  +FN   S    +   F LL+  E
Sbjct: 650  ---GNEPYDENQPTFVPFGLVNSVSNNSQTVYHCYFMEFNNKFSYDVSVQDIF-LLMRIE 705

Query: 745  LDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKS 804
            LD ++G  + ++     ++       G ++L  DQ+   K FQ      L      K  +
Sbjct: 706  LDPEIGCMQFDMGFDRGSLSVNFRYKGTINLSPDQVLLCKKFQVTILRILIDHDMNKL-T 764

Query: 805  SGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWR-INW---SGINP----CASVV 856
            +G    +L+ +          YLLLP       G G +  INW   + +NP    C    
Sbjct: 765  AGLDRCYLEDDL------EIDYLLLP-----AMGKGKYTAINWLAVNSVNPSEVSCKYHE 813

Query: 857  EFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIH 916
              I+ KS L    C+    N+  C + P      GK   ++A G+               
Sbjct: 814  PHIRTKSGL---VCSCKLQNALVCTSHPI-----GKISFYIATGT--------------- 850

Query: 917  TGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPH 976
                   +E+  NS  E    G T     T+  Y+ + +GI L    Q LL+ +      
Sbjct: 851  -------MELDGNSPMELRGGGVT-----TYKKYYEQHHGIQLQFEHQRLLKARHIFQVK 898

Query: 977  NLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPI--SVVKSLYLLPSVMQR 1034
            N             G K G   +  +  V +PPEL   V +PI  S++ S   +PS+M R
Sbjct: 899  N----------HCHGRKQGKEGEVSKAFVELPPELCSIVMMPISDSLIYSYSFIPSIMHR 948

Query: 1035 LESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSC 1094
             ESL+ A  L++    H     I +  +LEA+TT  C E+F  E LE LGDS LKYA S 
Sbjct: 949  FESLLGAFNLKKMHLDHCARNEIQTIKVLEAITTKRCKEAFHYESLETLGDSFLKYAASQ 1008

Query: 1095 HLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRP 1154
             LF TY   HEG LS +R   + N+ L KLG    L G+IR+  FDP  W+ PG    +P
Sbjct: 1009 QLFKTYHNHHEGLLSLKREKIISNAALCKLGCSSGLPGFIRNEPFDPNTWIIPGD---KP 1065

Query: 1155 VPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM-GHRWMGSKTIADCAEALIGAYYVGGG 1213
                            + F     V  GK   + G R +  K +AD  EALIGA+   GG
Sbjct: 1066 ----------------RSFKLKELVAKGKTIYVSGKRKLRQKIVADVVEALIGAFLSTGG 1109

Query: 1214 LIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQE 1273
              AAL  M W+GI         D             ++  +  +ES++ Y F  + LL E
Sbjct: 1110 EKAALLFMDWVGIKVSFNKIPYD-----RHFDIQPEKLVNVSFLESQLNYSFHDRSLLVE 1164

Query: 1274 AITHASVQ-----------EFY------------------------------------CY 1286
            A+TH S             EF                                     CY
Sbjct: 1165 AVTHGSYMLPEVPRCYQRLEFLGDSVLDYLITWHLYNKYPGMTPGQLTDMRSASVNNDCY 1224

Query: 1287 ------QNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKA--PKALGDLLESIV 1338
                    L+KH+ H S  L   ++  +  F K    +  G   +   PK LGD++ES+ 
Sbjct: 1225 AWSAIKHGLHKHVLHASQELHMHVSATLNKFDKLSSLSTFGYEAETSLPKVLGDIVESLA 1284

Query: 1339 GAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGY-FVKENCTLKGE 1397
            GA+L+D+  N + VW+  +P+L P+VTP+ L+L P+REL ELC    Y  + E+ + K  
Sbjct: 1285 GAILVDSGYNKEVVWQSIRPLLEPLVTPETLKLHPIRELNELCQKRSYKIILEDVSRKDG 1344

Query: 1398 MVHAELRLQLKDVLLVGEGQ-ERSRKAAKGKAASQLLKKLE------------VCEKRIS 1444
            + +  + ++   ++   E + +  R  AK     ++L  L+            VCE++++
Sbjct: 1345 LTYYRMEVEADGIIHKYEYKGDALRDTAKKIVCKEILNSLKDGGAHKDTAKKIVCEEKLN 1404

Query: 1445 ---KGASN 1449
               +G SN
Sbjct: 1405 SLKEGESN 1412


>gi|356532427|ref|XP_003534774.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max]
          Length = 1421

 Score =  548 bits (1411), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 447/1474 (30%), Positives = 680/1474 (46%), Gaps = 200/1474 (13%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL+    A   NTI  LETG+GKT+IA+ML++  A  ++      + +FL P V LV
Sbjct: 62   RSYQLEALYKAIHENTIVYLETGSGKTLIAIMLLRSYAHQLRKPS-PYIAVFLVPQVVLV 120

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
             QQ + ++ HTD +V  Y+G  GVD WD+  W++E+ K++VLVMTP ILL  LR +F  L
Sbjct: 121  SQQAEAVKRHTDLKVGMYWGDMGVDFWDAATWKQEMEKHEVLVMTPAILLSCLRHSFFKL 180

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS-----DNKPKVFGMTASPVVRKGVSSAMD 221
            +++  +++DECHHA G HPY  IM EFYH        + P++FGMTASP+  K   S   
Sbjct: 181  NMINVLIMDECHHARGKHPYACIMTEFYHHQLKSGISDLPRIFGMTASPIKSKVGKSESS 240

Query: 222  CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281
                I +L   + S+V+T   +  +  F+P++    +FY  +        G   V + + 
Sbjct: 241  WSENIQKLMILMHSKVYTCVSEAVITEFIPTSTPKFKFYSNN--------GIQFVLFEEL 292

Query: 282  DASLSKLQGSQLNCYKDMD---DKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338
             + L  L+       +  D      ++ +K+++     +++CLDELG+  A +A     E
Sbjct: 293  ASKLKMLKEQHELTLRSSDFTKSIAESAQKRITKIFCSLMFCLDELGVWLALKAA----E 348

Query: 339  KVLKAQEECEIYRQSSLQ-CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397
             +   + E   +  S  +  K F+ E +H + S L    +     G +    V +G +++
Sbjct: 349  SLSSNEIESFSWGHSGDRVVKDFILEGVHALKSYLQCDPQ--WSIGDNIKSDVKMGLLTS 406

Query: 398  KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK-VPFLTHLTVAYLTGSTTSVD 456
            K+  L+   L +   T + CIIFVERII A V+E  +   +P        ++ G    + 
Sbjct: 407  KVCCLVDSLLEYRGLTDMRCIIFVERIITAIVLEDLLNTLLPKYNSWKTKFIAGYNFGLQ 466

Query: 457  ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516
              +   Q E++  FR G VN++ AT ++EEG+ V  C+ VIRFD   TV S+IQSRGRAR
Sbjct: 467  NQSRTKQNEIVNEFRMGLVNIIVATSILEEGLDVQRCNLVIRFDPCPTVCSFIQSRGRAR 526

Query: 517  QHNSQFILMLERGN------LKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTK 570
              NS +ILM++ G+      L++     DI+R E S+  ++L  DP     +   + K +
Sbjct: 527  MRNSDYILMVKSGDSVTCSRLEKYLASADIMRKE-SLRHSSLPCDP----FEGDEFDK-E 580

Query: 571  SYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPF 630
            +Y V STGA     SS++LI+ YC  LP+D Y+ P P +  ++        L LP + P 
Sbjct: 581  AYHVSSTGAIANLSSSISLIYLYCSRLPADGYFKPAPRWDKETG------TLYLPKSCPL 634

Query: 631  QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAG 690
            Q I      NK   K + CLEAC++LH++GAL D+L+P +           +   +   G
Sbjct: 635  QPIC--VEGNKKHLKNIACLEACKQLHKIGALTDNLVPDI---------VIEEAEVEEFG 683

Query: 691  TTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEI-YSGFVLLIESELDNDV 749
                 E   T     L          I H Y    + +   +I      L I  ELD ++
Sbjct: 684  NEPYDENQPTFVPFGLVNSVSNNSHTIYHCYLMELSQNFSYDISVQDIFLAIRIELDPEI 743

Query: 750  GNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSRE 809
            G  + ++     +V   +   G ++L  + +   K FQ      +      K  +S  + 
Sbjct: 744  GCTQFDMGFDRGSVSLKLRYKGTINLSPNLVLLCKKFQVTLLGSIIDHSMNKLATSLDKC 803

Query: 810  FFLKRETNSLWSPSYMYLLLPLEIVNTFGDGS-WRINWSGINPCASVVEFIKEKSFLGAA 868
            +    E N        YLLLP       G G    +NW  I         ++  SF    
Sbjct: 804  YL---EDNV----EIDYLLLP-----AIGKGEKSHVNWLAIKS-------VEPSSF---- 840

Query: 869  QCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHT-GRIY-----S 922
                            CK   + +  I   +G V    L+D +V   H  G+IY      
Sbjct: 841  ---------------TCK---YHQPHIETKSGLVCTCKLQDALVCTSHPGGKIYFYITTG 882

Query: 923  IVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNF 982
            I+E+  NS  E    G    +  T+  Y+ + +GI L    Q LL+ +      N     
Sbjct: 883  IMELHGNSPME--LRGG---EVTTYKKYYEQHHGIQLQFENQWLLKARHHFKVKNYC--- 934

Query: 983  NDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPI--SVVKSLYLLPSVMQRLESLML 1040
                    G K G + +  +  V +PPEL   V  PI  S++ +   +PS+M RLESL+ 
Sbjct: 935  -------HGQKQGKDGEASKAFVELPPELCSIVMSPIKDSIIYTFSFIPSIMHRLESLLG 987

Query: 1041 ASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTY 1100
            A  L++    H     I +  +LEA+TT  C E+F  E LE LGDS LKYA S  LF TY
Sbjct: 988  AFNLKKMHLDHCTQNEIQTIKVLEAITTKRCNEAFHYESLETLGDSFLKYAASQQLFKTY 1047

Query: 1101 PKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECG 1160
               HEG LS +R   + N+ L KLG    L G+IR+  FDP  W  PG    +P      
Sbjct: 1048 KNHHEGLLSVKREKIISNAALCKLGCSSGLPGFIRNEPFDPHAWTIPGD---KPE----S 1100

Query: 1161 VDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYM 1220
            +   E+ + GK      K+ V      G R +  K IAD  EALIGA+   GG I+AL  
Sbjct: 1101 LKLEELVIKGK------KIYV-----HGKRKLNRKIIADVVEALIGAFLSTGGEISALLF 1149

Query: 1221 MKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASV 1280
            M W+GI         D             ++  ++ +ES++ Y F    LL EA+TH S 
Sbjct: 1150 MDWVGIKVSF-----DKIPYERHFDIQPEKLLNVRFLESQLKYSFHDHSLLVEALTHGSY 1204

Query: 1281 Q-----------EFY------------------------------------CY------Q 1287
                        EF                                     CY       
Sbjct: 1205 MLPEVPRCYQRLEFLGDSVLDYLITWHLYNEYPGMSPGQLTDMRAASVNNDCYAWSAIKH 1264

Query: 1288 NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKA--PKALGDLLESIVGAVLIDT 1345
             L+KH+ H S  L   I   + +F K   ++  G   +A  PK LGD++ES+ GA+L+D+
Sbjct: 1265 GLHKHVLHASQELHKHIAVTLNNFDKLSSSSTFGYESEASPPKVLGDIIESLAGAILVDS 1324

Query: 1346 KLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGY-FVKENCTLKGEMVHAELR 1404
              N + VW+  +P+L P+VTP+ L+L P+REL ELC    Y  V E+ + K  + +  ++
Sbjct: 1325 GFNKEVVWQSIRPLLEPLVTPETLKLHPIRELNELCQKRSYKIVLEDVSRKDGVTNYRMK 1384

Query: 1405 LQLKDVLLVGEGQERS-RKAAKGKAASQLLKKLE 1437
            ++   V+   E    + R  AK  A  ++L  L+
Sbjct: 1385 VEADGVIHEYEYTGPALRDTAKKIACKEILNSLK 1418


>gi|145331748|ref|NP_001078101.1| protein dicer-like 2 [Arabidopsis thaliana]
 gi|332640404|gb|AEE73925.1| protein dicer-like 2 [Arabidopsis thaliana]
          Length = 1374

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 417/1364 (30%), Positives = 649/1364 (47%), Gaps = 207/1364 (15%)

Query: 108  QQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
            QQ + +++HTD +V  Y+G  GVD WDS  W++E++K +VLVMTP ILLDALR +FLSL 
Sbjct: 71   QQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDALRHSFLSLS 130

Query: 168  IVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSSAMDC 222
            ++  +++DECHHA G HPY  IM+EFYHK     + N P++FGMTAS V  KG    +D 
Sbjct: 131  MIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKG--ENLDS 188

Query: 223  E-GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG---SDLKGKLEVSW 278
               +I ELE+ ++S+V+T E+++ +  FVP +  S ++Y   K      + L  KLE   
Sbjct: 189  YWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRASLVEKLERLT 248

Query: 279  SKFDASLSKLQGSQLNCYKDMDDKH-KTLRKQLSDYHAKILYCLDELGLICAYEAVKICL 337
             K   SL  L         D++     ++ K+L    + + YCLD+LG++ A +A +   
Sbjct: 249  IKHRLSLGTL---------DLNSSTVDSVEKRLLRISSTLTYCLDDLGILLAQKAAQ--- 296

Query: 338  EKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL-----PLADKIFLD---FGFDYSKA 389
                           S+ Q   FL   L++   AL       A + FL     G ++S A
Sbjct: 297  -------------SLSASQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGLNWSVA 343

Query: 390  -----VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-PFLTHL 443
                  + G ++ K   L++  L +     + CIIFV+R+I A V+E  + ++ P   + 
Sbjct: 344  NINGNAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNNW 403

Query: 444  TVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK 503
               Y+ G+ + +   T K Q E++E FR G VN++ AT ++EEG+ V +C+ VIRFD   
Sbjct: 404  KTKYVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPAS 463

Query: 504  TVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKA 563
             + S+IQSRGRAR  NS +++M+E G+L  +++L   +   + + + +L        L  
Sbjct: 464  NICSFIQSRGRARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHS-----LVP 518

Query: 564  CTYVKTKS----YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYE 619
            C  +   S    + VESTGA+VT  SSV+LI+ YC  LPSD+Y+ P P F     + +  
Sbjct: 519  CPPLPDDSDEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGS-- 576

Query: 620  CELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLI 679
            C L LP + P + +      N  + KQ VCL+AC +LH+VGAL+DHL+P +        +
Sbjct: 577  CTLYLPKSCPVKEV--KAEANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVAET---V 631

Query: 680  SKKNESLPGAGTTKRKELHGTTPIR---ALSGRWGEKCGVILHAYKFNFACSIVTEIYSG 736
            S+K E +         + +   P      L  ++  +     H Y      +     +  
Sbjct: 632  SQKLEKI---------QYNTEQPCYFPPELVSQFSAQPETTYHFYLIRMKPNSPRNFHLN 682

Query: 737  FVLL-IESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLF 795
             VLL     L++D+GN    L     T+  T+S  G  HL  +++   + FQ   F  L 
Sbjct: 683  DVLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLL 742

Query: 796  GKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASV 855
                V++         L+         +  YLL+P    +T    +  I+W  I      
Sbjct: 743  DH-SVENLMEALNGLHLRDGV------ALDYLLVP----STHSHETSLIDWEVIRSVNLT 791

Query: 856  VEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAI 915
               + EK       C+ NG +                 ++H  +G      +++ +V   
Sbjct: 792  SHEVLEKH----ENCSTNGASR----------------ILHTKDGLFCTCVVQNALVYTP 831

Query: 916  HTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNP 975
            H G +Y    ++NN +  S        D +T++ Y+ E++GI L    +PLL  +     
Sbjct: 832  HNGYVYCTKGVLNNLNGNSLLTKRNSGD-QTYIEYYEERHGIQLNFVDEPLLNGRHIFTL 890

Query: 976  HNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLLPSVMQ 1033
            H+ L            +K     +  +  V +PPEL   +  PISV  + S   +PSVMQ
Sbjct: 891  HSYL----------HMAKKKKEKEHDREFVELPPELCHVILSPISVDMIYSYTFIPSVMQ 940

Query: 1034 RLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVS 1093
            R+ESL++A  L++ I       +IP+  +LEA+TT  C + F +E LE LGDS LKYAV 
Sbjct: 941  RIESLLIAYNLKKSI----PKVNIPTIKVLEAITTKKCEDQFHLESLETLGDSFLKYAVC 996

Query: 1094 CHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLR 1153
              LF      HEG LS ++   + N  L + G  +KLQG+IRD  F+P+ W+ PGQ    
Sbjct: 997  QQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQ---- 1052

Query: 1154 PVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG 1213
                     +    L      +   + V        R +  K++AD  E+LIGAY   GG
Sbjct: 1053 --------SSAAYSLVNDTLPESRNIYVA-----SRRNLKRKSVADVVESLIGAYLSEGG 1099

Query: 1214 LIAALYMMKWLGIDADLEVSLVD-DCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQ 1272
             +AAL  M W+GI  D   + +  D   +A       ++  +  +ES + Y F  K LL 
Sbjct: 1100 ELAALMFMNWVGIKVDFTTTKIQRDSPIQAE------KLVNVGYMESLLNYSFEDKSLLV 1153

Query: 1273 EAITHASVQ-----------EFY------------------------------------C 1285
            EA+TH S             EF                                     C
Sbjct: 1154 EALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNEC 1213

Query: 1286 Y------QNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSG--PSMKAPKALGDLLESI 1337
            Y       NL+KH+ + S  L   I+  V  F +    +  G    +  PK LGD++ES+
Sbjct: 1214 YALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGDVIESL 1273

Query: 1338 VGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELC 1381
             GA+ +D+  N + V+   KP+L  ++TP+ ++L P+REL ELC
Sbjct: 1274 AGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELC 1317


>gi|94450856|gb|ABF19798.1| dicer-like 2 spliceform 2 [Arabidopsis thaliana]
          Length = 1374

 Score =  535 bits (1377), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 417/1364 (30%), Positives = 650/1364 (47%), Gaps = 207/1364 (15%)

Query: 108  QQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
            QQ + +++HTD +V  Y+G  GVD WDS  W++E++K +VLVMTP ILLDALR +FLSL 
Sbjct: 71   QQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDALRHSFLSLS 130

Query: 168  IVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSSAMDC 222
            ++  +++DECHHA G HPY  IM+EFYHK     + N P++FGMTAS V  KG    +D 
Sbjct: 131  MIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKG--ENLDS 188

Query: 223  E-GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG---SDLKGKLEVSW 278
               +I ELE+ ++S+V+T E+++ +  FVP +  S ++Y   K      + L  KLE   
Sbjct: 189  YWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRASLVEKLERLT 248

Query: 279  SKFDASLSKLQGSQLNCYKDMDDKH-KTLRKQLSDYHAKILYCLDELGLICAYEAVKICL 337
             K   SL  L         D++     ++ K+L    + + YCLD+LG++ A +A +   
Sbjct: 249  IKHRLSLGTL---------DLNSSTVDSVEKRLLRISSTLTYCLDDLGILLAQKAAQ--- 296

Query: 338  EKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL-----PLADKIFLD---FGFDYSKA 389
                           S+ Q   FL   L++   AL       A + FL     G ++S A
Sbjct: 297  -------------SLSASQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGLNWSVA 343

Query: 390  -----VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-PFLTHL 443
                  + G ++ K   L++  L +     + CIIFV+R+I A V+E  + ++ P   + 
Sbjct: 344  NINGNAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNNW 403

Query: 444  TVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK 503
               Y+ G+ + +   T K Q E++E FR G VN++ AT ++EEG+ V +C+ VIRFD   
Sbjct: 404  KTKYVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPAS 463

Query: 504  TVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKA 563
             + S+IQSRGRAR  NS +++M+E G+L  +++    +   + + + +L        L  
Sbjct: 464  NICSFIQSRGRARMQNSDYLMMVESGDLLTQSRSMKYLSGGKRMREESLDHS-----LVP 518

Query: 564  CTYVKTKS----YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYE 619
            C  +   S    + VESTGA+VT  SSV+LI+ YC  LPSD+Y+ P P F     + +  
Sbjct: 519  CPPLPDDSDEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGS-- 576

Query: 620  CELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLI 679
            C L LP + P + +      N  + KQ VCL+AC +LH+VGAL+DHL+P +        +
Sbjct: 577  CTLYLPKSCPVKEV--KAEANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVAET---V 631

Query: 680  SKKNESLPGAGTTKRKELHGTTPIR---ALSGRWGEKCGVILHAYKFNFACSIVTEIYSG 736
            S+K E +         + +   P      L  ++  +     H Y      +    ++  
Sbjct: 632  SQKLEKI---------QYNTEQPCYFPPELVSQFSAQPETTYHFYLIRMKPNSPRNLHLN 682

Query: 737  FVLL-IESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLF 795
             VLL     L++D+GN    L     T+  T+S  G  HL  +++   + FQ   F  L 
Sbjct: 683  DVLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTREEVLFCRRFQITLFRVLL 742

Query: 796  GKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASV 855
                V++         L+         +  YLL+P    +T    +  I+W  I      
Sbjct: 743  DH-SVENLMEALNGLHLRDGV------ALDYLLVP----STHSHETSLIDWEVIRSVNLT 791

Query: 856  VEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAI 915
               + EK       C+ NG +                 ++H  +G      +++ +V   
Sbjct: 792  SHEVLEKH----ENCSTNGASR----------------ILHTKDGLFCTCVVQNALVYTP 831

Query: 916  HTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNP 975
            H G +Y    ++NN +  S        D +T++ Y+ E++GI L    +PLL  +     
Sbjct: 832  HNGYVYCTKGVLNNLNGNSLLTKRNSGD-QTYIEYYEERHGIQLNFVDEPLLNGRHIFTL 890

Query: 976  HNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLLPSVMQ 1033
            H+ L            +K     +  +  V +PPEL   +  PISV  + S   +PSVMQ
Sbjct: 891  HSYL----------HMAKKKKEKEHDREFVELPPELCHVILSPISVDMIYSYTFIPSVMQ 940

Query: 1034 RLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVS 1093
            R+ESL++A  L++ I       +IP+  +LEA+TT  C + F +E LE LGDS LKYAV 
Sbjct: 941  RIESLLIAYNLKKSI----PKVNIPTIKVLEAITTKKCEDQFHLESLETLGDSFLKYAVC 996

Query: 1094 CHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLR 1153
              LF      HEG LS ++   + N  L + G  +KLQG+IRD  F+P+ W+ PGQ    
Sbjct: 997  QQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQ---- 1052

Query: 1154 PVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG 1213
                     +    L      +   + V        R +  K++AD  E+LIGAY   GG
Sbjct: 1053 --------SSAAYSLVNDTLPESRNIYVA-----SRRNLKRKSVADVVESLIGAYLSEGG 1099

Query: 1214 LIAALYMMKWLGIDADLEVSLVD-DCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQ 1272
             +AAL  M W+GI  DL  + +  D   +A       ++  +  +ES + Y F  K LL 
Sbjct: 1100 ELAALMFMNWVGIKVDLTTTKIQRDSPIQAE------KLVNVGYMESLLNYSFEDKSLLV 1153

Query: 1273 EAITHASVQ-----------EFY------------------------------------C 1285
            EA+TH S             EF                                     C
Sbjct: 1154 EALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNEC 1213

Query: 1286 Y------QNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSG--PSMKAPKALGDLLESI 1337
            Y       NL+KH+ + S  L   I+  V  F +    +  G    +  PK LGD++ES+
Sbjct: 1214 YALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGDVIESL 1273

Query: 1338 VGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELC 1381
             GA+ +D+  N + V+   KP+L  ++TP+ ++L P+REL ELC
Sbjct: 1274 AGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELC 1317


>gi|222625282|gb|EEE59414.1| hypothetical protein OsJ_11564 [Oryza sativa Japonica Group]
          Length = 1371

 Score =  534 bits (1375), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 415/1422 (29%), Positives = 665/1422 (46%), Gaps = 232/1422 (16%)

Query: 45   IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
            + R YQL+  E A R NT+A LETG+GKT+IAVML++  A  ++    ++  +FL PTV 
Sbjct: 33   MARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVV 92

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LV QQ  V+  HTD  V+++ G  GVD WD+  W+ ++   +VLVMTPQILLD LR +F 
Sbjct: 93   LVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFF 152

Query: 165  SLDIVCFIVIDECHHATGNHPYTKIMKEFYH------KSDNKPKVFGMTASPVVRKGVSS 218
             L  +  ++ DECHHA GN PY  I KEFYH       SD  P++FGM+AS +  K ++ 
Sbjct: 153  RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKDLN- 211

Query: 219  AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL---- 274
              +   QISE+E+ ++S+V+T++ ++ +  ++P A      +D S    S+L   +    
Sbjct: 212  PHNYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVDFDDSNI-SSELHANILSCL 270

Query: 275  -EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
              ++    +A   KL GS L          +  ++++S  H   +YCL  LG+  A +A 
Sbjct: 271  NRLNKKHIEALDRKLHGSSL----------ENAKQRISKLHHTFVYCLYNLGVWLAAKAA 320

Query: 334  KICLEKVLKAQEECEIYRQSSLQCKYFLEEVL--HVIGSALPLADKI------FLD---F 382
                        E + Y ++SL    F  E L  +V G     ++++      FL     
Sbjct: 321  ------------EVQSYEENSLS---FWGETLDKNVEGFIRNYSEEVHRELSCFLKNGHI 365

Query: 383  GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
            G  +      G ++ K+H L++  L +     + CI+FVER+I + V+E  +  +  ++ 
Sbjct: 366  GEKFPADSQDGILTPKVHCLIRTLLQYRHMQDLRCIVFVERVITSIVLEHLLSSIHQMSG 425

Query: 443  LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
              V ++ GS   + + + K   E++ESFR GKV+++ AT ++EEG+ VP+C+ VIRFD  
Sbjct: 426  WNVKHMAGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPS 485

Query: 503  KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLK 562
             TV S+IQSRGRAR  NS ++L++ RG+++ +      + S                   
Sbjct: 486  ATVCSFIQSRGRARMENSDYLLLVGRGDVEAQTNAEKFLAS------------------- 526

Query: 563  ACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECEL 622
                              +  + S+ L    C+ L +  Y+ P P F    A     C L
Sbjct: 527  ----------------GQIMREESLRLGSISCQPLENTLYFNPLPRFDIDKASGT--CTL 568

Query: 623  TLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKK 682
             LP ++P QT+        ++ K+ VCL+AC++LH +GAL D LLP ++ P +       
Sbjct: 569  HLPKSSPVQTV--NVEGEGSILKETVCLKACQELHAIGALTDSLLPELDVPCDEE----- 621

Query: 683  NESLPGAGTTKRKELHGTTPIRALSG-RWGEKCGVILHAYKFNFACSIVTEIYSGFVLLI 741
                P      + E     P   +   R   + G I + YK +      T   +  +L +
Sbjct: 622  ----PDIVVENKIEQPSYFPEEFVDNWRSFSRLG-IYYCYKISLEGCPKTASPTDILLAL 676

Query: 742  ESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVK 801
            + +L +D  +   +L         T+   G +HL+ +Q+  A+ FQ    + L G   ++
Sbjct: 677  KCDLGSDFTSSSFKLPGGQDNASVTMKYVGIIHLNQEQVIIARRFQTTILSFLIGDDHLE 736

Query: 802  SKSSGSREFFLKRETNSLWSP-SYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIK 860
              S+G + F      + +  P   +YLLLPL         S RI+W  +           
Sbjct: 737  V-SNGIKYF------HEMQVPIGVVYLLLPLV--------SGRIDWCSMK---------- 771

Query: 861  EKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRI 920
               F  +     N  + + C +      C   D++   +G      LK+ +V   H    
Sbjct: 772  ---FSSSPIYEANNKHMTHCHS------CRDIDLLQTKDGPFCRCILKNSIVCTPHNNIF 822

Query: 921  YSIVEIVN-NSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL 979
            Y I   ++ ++++  P     D    T+ +YF  ++G+ L    QPLL    + + H  +
Sbjct: 823  YVISGFLDLDANSRLP---QHDGTVVTYKDYFKTRHGLTLTFENQPLL----AGSKHVKV 875

Query: 980  VNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLLPSVMQRLES 1037
             NF     S K  + G      +  V +PPEL   +  P+S   +     +PS+M R++ 
Sbjct: 876  RNFLHNCYSKKEKEPG-----DRYSVELPPELCRIIMSPVSANNLHIFSYVPSIMFRIQC 930

Query: 1038 LMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLF 1097
            ++L+ +L+ ++    + F +P   ILEALTT  C E FS E LE LGDS LKY  + HLF
Sbjct: 931  MLLSVKLKVQLGPTVQQFDVPVLKILEALTTKKCQEEFSQESLETLGDSFLKYVTTRHLF 990

Query: 1098 LTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPC 1157
              Y  +HEG L+  +   + N+ L +L     L GYI    F+PR W+         +PC
Sbjct: 991  SEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIHAEEFNPRDWI---------IPC 1041

Query: 1158 ECGVDTLEVPLDGKFFTQDTKVVVGKPCDM-GHRWMG--SKTIADCAEALIGAYYVGGGL 1214
                  L+    G     + K+    P  M   R M   SK IAD  EALIGAY    G 
Sbjct: 1042 ------LDYDERG-----NKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGE 1090

Query: 1215 IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEA 1274
             AA  +MK LG++ +    +  +         ++     ++ +E  +GY+F    LL EA
Sbjct: 1091 KAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFI----NVRSLEGMLGYKFNDSLLLLEA 1146

Query: 1275 ITHASVQ------------------------EFY-----------------------CYQ 1287
            +TH S Q                        E+Y                       CY 
Sbjct: 1147 LTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYA 1206

Query: 1288 N------LYKHLQHCSTLLLSQITEYV-KSFPKPGETTDSGPSMKAPKALGDLLESIVGA 1340
            +      L KH+ H S+ L  +++ Y+ +SF  P    ++G  +  PK LGD++ESI GA
Sbjct: 1207 HAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAGIGL--PKVLGDVIESIAGA 1264

Query: 1341 VLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCD 1382
            + +D+K + + VWR  K +L P+ TP+ +E  P++ L E CD
Sbjct: 1265 IYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCD 1306


>gi|251764794|sp|Q69LX2.2|DCL2B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2b; AltName:
            Full=Dicer-like protein 2b; Short=OsDCL2b
          Length = 1377

 Score =  531 bits (1367), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 414/1422 (29%), Positives = 663/1422 (46%), Gaps = 226/1422 (15%)

Query: 45   IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
            + R YQL+  E A R NT+A LETG+GKT+IAVML++  A  ++    ++  +FL PTV 
Sbjct: 33   MARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVV 92

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LV QQ  V+  HTD  V+++ G  GVD WD+  W+ ++   +VLVMTPQILLD LR +F 
Sbjct: 93   LVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFF 152

Query: 165  SLDIVCFIVIDECHHATGNHPYTKIMKEFYH------KSDNKPKVFGMTASPVVRKGVSS 218
             L  +  ++ DECHHA GN PY  I KEFYH       SD  P++FGM+AS +  K ++ 
Sbjct: 153  RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKDLNQ 212

Query: 219  AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL---- 274
              +   QISE+E+ ++S+V+T++ ++ +  ++P A      +D S    S+L   +    
Sbjct: 213  H-NYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVHFDDSNI-SSELHANILSCL 270

Query: 275  -EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
              ++    +A   KL GS L          +  ++++S  H   +YCL  LG+  A +A 
Sbjct: 271  NRLTKKHIEALDRKLHGSSL----------ENAKQRISKLHRTFVYCLYNLGVWLAAKAA 320

Query: 334  KICLEKVLKAQEECEIYRQSSLQCKYFLEEVL--HVIGSALPLADKI------FLD---F 382
                        E + Y ++SL    F  E L  +V G     ++++      FL     
Sbjct: 321  ------------EVQSYEENSLS---FWGETLDKNVEGFIRNYSEEVHRELSCFLKNGHI 365

Query: 383  GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
            G  +      G ++ K+H L++  L +     + CI+FV+R+I + V+E  +  +  ++ 
Sbjct: 366  GEKFPADSQDGILTPKVHCLIRTLLQYRHMQDLRCIVFVQRVITSIVLEPLLSSIHQMSG 425

Query: 443  LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
              V ++ GS   + + + K   E++ESFR GKV+++ AT ++EEG+ VP+C+ VIRFD  
Sbjct: 426  WNVKHMAGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPS 485

Query: 503  KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLK 562
             TV S+IQSRGRAR  NS ++L++ RG+++        + S + + + +L     +C   
Sbjct: 486  ATVCSFIQSRGRARMENSDYLLLVGRGDVEAHTNAKKFLASGQIMREESLRLGSISCQPL 545

Query: 563  ACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECEL 622
              T  +   Y VEST                             P F    A     C L
Sbjct: 546  ENTLCEDTYYRVEST-----------------------------PAFDIDKASGT--CTL 574

Query: 623  TLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKK 682
             LP ++P QT+        ++ K+ VCL+AC++LH +GAL D LLP ++ P +       
Sbjct: 575  HLPKSSPVQTV--NVEGEGSILKETVCLKACQELHAIGALTDSLLPELDVPCDEE----- 627

Query: 683  NESLPGAGTTKRKELHGTTPIRALSG-RWGEKCGVILHAYKFNFACSIVTEIYSGFVLLI 741
                P      + E     P   +   R   + G I + YK +      T   +  +L +
Sbjct: 628  ----PDIVVENKIEQPSYFPEEFVDNWRSFSRLG-IYYCYKISLEGCPKTASPTDILLAL 682

Query: 742  ESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVK 801
            + +L +D  +   +L         T+   G +HL+ +Q+  A+ FQ    + L G   ++
Sbjct: 683  KCDLGSDFTSSSFKLPGGQDNASVTMKYVGIIHLNQEQVIIARRFQTTILSFLIGDDHLE 742

Query: 802  SKSSGSREFFLKRETNSLWSP-SYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIK 860
              S+G + F      + +  P   +YLLLPL         S RI+W  +           
Sbjct: 743  V-SNGIKYF------HEMQVPIGVVYLLLPLV--------SGRIDWCSMK---------- 777

Query: 861  EKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRI 920
               F  +     N  + + C +      C   D++   +G      LK+ +V   H    
Sbjct: 778  ---FSSSPIYEANNKHMTHCHS------CRDIDLLQTKDGPFCRCILKNSIVCTPHNNIF 828

Query: 921  YSIVEIVN-NSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL 979
            Y I   ++ ++++  P     D    T+ +YF  ++G+ L    QPLL   +     N L
Sbjct: 829  YVISGFLDLDANSRLP---QHDGTVVTYKDYFKTRHGLTLTFENQPLLAGSKHVKVRNFL 885

Query: 980  VNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLLPSVMQRLES 1037
             N+        G +           V +PPEL   +  P+S   +     +PS+M R++ 
Sbjct: 886  HNYYYKKEKEPGDRYS---------VELPPELCRIIMSPVSANNLHIFSYVPSIMFRIQC 936

Query: 1038 LMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLF 1097
            ++L+ +L+ ++    + F +P   ILEALTT  C E FS E LE LGDS LKY  + HLF
Sbjct: 937  MLLSVKLKVQLGPTVQQFDVPVLKILEALTTKKCQEEFSQESLETLGDSFLKYVTTRHLF 996

Query: 1098 LTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPC 1157
              Y  +HEG L+  +   + N+ L +L     L GYI    F+PR W+         +PC
Sbjct: 997  SEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIHAEEFNPRDWI---------IPC 1047

Query: 1158 ECGVDTLEVPLDGKFFTQDTKVVVGKPCDM-GHRWMG--SKTIADCAEALIGAYYVGGGL 1214
                  L+    G     + K+    P  M   R M   SK IAD  EALIGAY    G 
Sbjct: 1048 ------LDYDERG-----NKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGE 1096

Query: 1215 IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEA 1274
             AA  +MK LG++ +    +  +         ++    +++ +E  +GY+F    LL EA
Sbjct: 1097 KAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFI----DVRSLEGMLGYKFNDSLLLLEA 1152

Query: 1275 ITHASVQ------------------------EFY-----------------------CYQ 1287
            +TH S Q                        E+Y                       CY 
Sbjct: 1153 LTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYA 1212

Query: 1288 N------LYKHLQHCSTLLLSQITEYV-KSFPKPGETTDSGPSMKAPKALGDLLESIVGA 1340
            +      L KH+ H S+ L  +++ Y+ +SF  P    ++G  +  PK LGD++ESI GA
Sbjct: 1213 HAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAGIGL--PKVLGDVIESIAGA 1270

Query: 1341 VLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCD 1382
            + +D+K + + VWR  K +L P+ TP+ +E  P++ L E CD
Sbjct: 1271 IYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCD 1312


>gi|50726394|dbj|BAD34005.1| CAF protein-like [Oryza sativa Japonica Group]
 gi|51091635|dbj|BAD36404.1| CAF protein-like [Oryza sativa Japonica Group]
          Length = 1375

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 414/1422 (29%), Positives = 665/1422 (46%), Gaps = 228/1422 (16%)

Query: 45   IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
            + R YQL+  E A R NT+A LETG+GKT+IAVML++  A  ++    ++  +FL PTV 
Sbjct: 33   MARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVV 92

Query: 105  LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            LV QQ  V+  HTD  V+++ G  GVD WD+  W+ ++   +VLVMTPQILLD LR +F 
Sbjct: 93   LVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFF 152

Query: 165  SLDIVCFIVIDECHHATGNHPYTKIMKEFYH------KSDNKPKVFGMTASPVVRKGVSS 218
             L  +  ++ DECHHA GN PY  I KEFYH       SD  P++FGM+AS +  K ++ 
Sbjct: 153  RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKDLNQ 212

Query: 219  AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL---- 274
              +   QISE+E+ ++S+V+T++ ++ +  ++P A      +D S    S+L   +    
Sbjct: 213  H-NYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVHFDDSNI-SSELHANILSCL 270

Query: 275  -EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
              ++    +A   KL GS L          +  ++++S  H   +YCL  LG+  A +A 
Sbjct: 271  NRLTKKHIEALDRKLHGSSL----------ENAKQRISKLHRTFVYCLYNLGVWLAAKAA 320

Query: 334  KICLEKVLKAQEECEIYRQSSLQCKYFLEEVL--HVIGSALPLADKI------FLD---F 382
                        E + Y ++SL    F  E L  +V G     ++++      FL     
Sbjct: 321  ------------EVQSYEENSLS---FWGETLDKNVEGFIRNYSEEVHRELSCFLKNGHI 365

Query: 383  GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
            G  +      G ++ K+H L++  L +     + CI+FV+R+I + V+E  +  +  ++ 
Sbjct: 366  GEKFPADSQDGILTPKVHCLIRTLLQYRHMQDLRCIVFVQRVITSIVLEPLLSSIHQMSG 425

Query: 443  LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
              V ++ GS   + + + K   E++ESFR GKV+++ AT ++EEG+ VP+C+ VIRFD  
Sbjct: 426  WNVKHMAGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPS 485

Query: 503  KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLK 562
             TV S+IQSRGRAR  NS ++L++ RG+++        + S + + + +L     +C   
Sbjct: 486  ATVCSFIQSRGRARMENSDYLLLVGRGDVEAHTNAKKFLASGQIMREESLRLGSISC--- 542

Query: 563  ACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECEL 622
                       +E+T                CE    D YY  +  F    A     C L
Sbjct: 543  ---------QPLENT---------------LCE----DTYYRVESTFDIDKASGT--CTL 572

Query: 623  TLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKK 682
             LP ++P QT+        ++ K+ VCL+AC++LH +GAL D LLP ++ P +       
Sbjct: 573  HLPKSSPVQTV--NVEGEGSILKETVCLKACQELHAIGALTDSLLPELDVPCDEE----- 625

Query: 683  NESLPGAGTTKRKELHGTTPIRALSG-RWGEKCGVILHAYKFNFACSIVTEIYSGFVLLI 741
                P      + E     P   +   R   + G I + YK +      T   +  +L +
Sbjct: 626  ----PDIVVENKIEQPSYFPEEFVDNWRSFSRLG-IYYCYKISLEGCPKTASPTDILLAL 680

Query: 742  ESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVK 801
            + +L +D  +   +L         T+   G +HL+ +Q+  A+ FQ    + L G   ++
Sbjct: 681  KCDLGSDFTSSSFKLPGGQDNASVTMKYVGIIHLNQEQVIIARRFQTTILSFLIGDDHLE 740

Query: 802  SKSSGSREFFLKRETNSLWSP-SYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIK 860
              S+G + F      + +  P   +YLLLPL         S RI+W  +           
Sbjct: 741  V-SNGIKYF------HEMQVPIGVVYLLLPLV--------SGRIDWCSMK---------- 775

Query: 861  EKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRI 920
               F  +     N  + + C +      C   D++   +G      LK+ +V   H    
Sbjct: 776  ---FSSSPIYEANNKHMTHCHS------CRDIDLLQTKDGPFCRCILKNSIVCTPHNNIF 826

Query: 921  YSIVEIVN-NSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL 979
            Y I   ++ ++++  P     D    T+ +YF  ++G+ L    QPLL   +     N L
Sbjct: 827  YVISGFLDLDANSRLP---QHDGTVVTYKDYFKTRHGLTLTFENQPLLAGSKHVKVRNFL 883

Query: 980  VNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLLPSVMQRLES 1037
             N+        G +           V +PPEL   +  P+S   +     +PS+M R++ 
Sbjct: 884  HNYYYKKEKEPGDRYS---------VELPPELCRIIMSPVSANNLHIFSYVPSIMFRIQC 934

Query: 1038 LMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLF 1097
            ++L+ +L+ ++    + F +P   ILEALTT  C E FS E LE LGDS LKY  + HLF
Sbjct: 935  MLLSVKLKVQLGPTVQQFDVPVLKILEALTTKKCQEEFSQESLETLGDSFLKYVTTRHLF 994

Query: 1098 LTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPC 1157
              Y  +HEG L+  +   + N+ L +L     L GYI    F+PR W+         +PC
Sbjct: 995  SEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIHAEEFNPRDWI---------IPC 1045

Query: 1158 ECGVDTLEVPLDGKFFTQDTKVVVGKPCDM-GHRWMG--SKTIADCAEALIGAYYVGGGL 1214
                  L+    G     + K+    P  M   R M   SK IAD  EALIGAY    G 
Sbjct: 1046 ------LDYDERG-----NKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGE 1094

Query: 1215 IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEA 1274
             AA  +MK LG++ +    +  +         ++    +++ +E  +GY+F    LL EA
Sbjct: 1095 KAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFI----DVRSLEGMLGYKFNDSLLLLEA 1150

Query: 1275 ITHASVQ------------------------EFY-----------------------CYQ 1287
            +TH S Q                        E+Y                       CY 
Sbjct: 1151 LTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYA 1210

Query: 1288 N------LYKHLQHCSTLLLSQITEYV-KSFPKPGETTDSGPSMKAPKALGDLLESIVGA 1340
            +      L KH+ H S+ L  +++ Y+ +SF  P    ++G  +  PK LGD++ESI GA
Sbjct: 1211 HAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAGIGL--PKVLGDVIESIAGA 1268

Query: 1341 VLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCD 1382
            + +D+K + + VWR  K +L P+ TP+ +E  P++ L E CD
Sbjct: 1269 IYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCD 1310


>gi|242033791|ref|XP_002464290.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
 gi|241918144|gb|EER91288.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
          Length = 1385

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 423/1498 (28%), Positives = 676/1498 (45%), Gaps = 251/1498 (16%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL+  E A   NT+  LETGAGKT+IAV+L++  A  I+S+      +FL PTV LV
Sbjct: 17   RWYQLEALERALAGNTLVFLETGAGKTLIAVLLLRRFANRIRSSPPPCFAVFLVPTVVLV 76

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
             QQ  V+R HTD  V E++G  GVD W++  W+  ++  +VLVMTPQILLD LR +F  L
Sbjct: 77   SQQARVVRAHTDLTVAEFFGEMGVDFWNADKWRDMVDGAEVLVMTPQILLDNLRHSFFRL 136

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYH------KSDNKPKVFGMTASPVVRKGVSSAM 220
              +  ++ DECHHATGN PY  I KEFYH       SD  P++FGMTAS +  K ++   
Sbjct: 137  RDIPLLIFDECHHATGNSPYACIFKEFYHPQLNSRPSDPIPRIFGMTASLINSKDLARD- 195

Query: 221  DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD----QSKFCGSDLKGKLEV 276
                +ISELE+ ++++V+T+  ++E+  ++P A      YD    +S+     ++   ++
Sbjct: 196  KYSMKISELENLMNAKVYTVASESELLQYIPFATTRIIEYDDYIVKSELYSHTIRCLDKL 255

Query: 277  SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC 336
                 +    KL GS L          +   K++   +A  LYC+ +LG+  A +A +I 
Sbjct: 256  EAKHLEILKGKLHGSYL----------ENAEKRIKKLNAMFLYCISDLGVWLAAKAAEI- 304

Query: 337  LEKVLKAQEECEIYRQSSL--QCKYFLEEVLHVIGSALPLADKIFLDF---------GFD 385
               +   +E C  +    L  + + F+   +  + + L    +I L           G D
Sbjct: 305  ---LQSNKESCVSFWGEKLDDEVEGFIRNYIGDVNNEL---SEIILKMTKRGLQRHIGED 358

Query: 386  YSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTV 445
            +   +  G + +K++ L++  L +     + CI+FV+R+I + V+E  +  +  ++  +V
Sbjct: 359  FDADLQDGLLKSKVYFLIKSLLEYRHVQDLRCIVFVKRVITSIVLEALLSTINQMSGWSV 418

Query: 446  AYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTV 505
             Y+ G    +   +     E+++SFR GKV+L+ AT ++EEG+ VP+C+ +IRFD     
Sbjct: 419  RYMAGKNFGLQYQSRNTHVEIVDSFRSGKVHLIIATQILEEGLDVPSCNLIIRFD---QA 475

Query: 506  SSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC- 564
            ++ +             +   + G+    +K  + + S + + +   S+  E+ F +   
Sbjct: 476  ATNVDGGCLFDGVRDTSVFCFDGGDANALSKTEEFLESGQIMREE--SQRLESTFYQPLP 533

Query: 565  -TYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK---------------------Y 602
             T    + Y V+STGA VT +SSV LI+ +C  LPSD+                     Y
Sbjct: 534  NTLCNEEFYGVQSTGAIVTLNSSVQLIYFFCSKLPSDESVFFLRLDNVFFWFIQQNISWY 593

Query: 603  YTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGAL 662
            + P P F    A     C L LP ++P QTI        ++ K++VCL AC +LH VGAL
Sbjct: 594  FNPLPRFNIDKALGT--CTLHLPMSSPVQTIYA--EGEISIIKRVVCLNACRELHAVGAL 649

Query: 663  NDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGV-ILHAY 721
             D+LLP    P E+          P     K KE         L   W   C   + + Y
Sbjct: 650  TDYLLPESSVPCEDE---------PDIVVDKYKEEQPDYFPEQLMDNWLSFCHRGLYYCY 700

Query: 722  KFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMS 781
            K +      T   +  VL ++ +L +D  +   +L+ V   +  T+   G +HL+ +Q+ 
Sbjct: 701  KISLEGCSETTTPAEIVLAVKCDLGSDFISTTFKLWGVQDYLSFTIRYVGVIHLNQEQVI 760

Query: 782  KAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGS 841
             A+ FQ    + L  K    S+   S +  L+ + +S      +YLLLP+         S
Sbjct: 761  VARRFQTRILSLLISKDL--SEDGNSIKSLLEMQVSS----GAVYLLLPVV--------S 806

Query: 842  WRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGS 901
             +I+W  I   +S +    E + + +   ++                C    ++    G 
Sbjct: 807  GKIDWCSIKFSSSEMH---EDTIMDSRHSHS----------------CKDTGLLQTKGGP 847

Query: 902  VDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIH 961
                 L++ +V   H G +Y++  ++ + +A SP      +   ++  +F E +G+ L  
Sbjct: 848  FCPCMLQNSIVSTPHNGMLYAVSGLLLDLNANSPM----RESVLSYKTHFKESHGLDLKC 903

Query: 962  PGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPIS- 1020
              QPLLR  +     N+L   N      K  K   N         +PPEL + V  P+S 
Sbjct: 904  EDQPLLRASKLVKVRNILHERN-----YKKEKESTNV------FELPPELCIVVMAPVSA 952

Query: 1021 -VVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMER 1079
              ++    +PS+M R++ ++L+  L+ ++    + F IP+  +LEALT   C E FS E 
Sbjct: 953  NTLRCFTFIPSIMYRIQCMLLSVNLKTQLGPSMKQFDIPALKVLEALTAKKCKEEFSQES 1012

Query: 1080 LELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN-STLHKLGTDRKLQGYIRDSA 1138
            LE LGDS LK                    A    AV N   L  L    + +GYIR   
Sbjct: 1013 LETLGDSFLK--------------------AWAFAAVVNCGILFLLWRSDQAKGYIRSET 1052

Query: 1139 FDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIA 1198
            F+P  W+ PG                               V    C    R + SK IA
Sbjct: 1053 FNPETWIIPG-------------------------------VGNDSCGRSLRKLKSKRIA 1081

Query: 1199 DCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIE 1258
            D  EALIGAY    G  AA   +K LG+D +     V+  IT  +  +++     ++ +E
Sbjct: 1082 DSVEALIGAYLSAAGEQAAYLFLKSLGMDIEFHKMPVERKIT-INAENFI----NLRSLE 1136

Query: 1259 SKIGYEFTVKFLLQEAITHASVQ-------------------------EFY--------- 1284
              + Y F+   LL EA+TH S Q                          FY         
Sbjct: 1137 LMLDYNFSDPSLLLEALTHGSYQIAGTTACYQRLEFLGDAVLDHIFTDYFYHQYPECTPE 1196

Query: 1285 -------------CYQN------LYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPS-- 1323
                         CY +      L+KH+ H S+ L  ++ +Y+  F    E + SGPS  
Sbjct: 1197 LLTDLRSASVNNSCYAHAAVKAGLHKHILHSSSALHKKMADYLDKF----EQSFSGPSHG 1252

Query: 1324 ----MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIE 1379
                +  PK LGD++ESI GA+ IDTK +   VWR  K +L P+ TPD LE+ P++EL E
Sbjct: 1253 WEAGICLPKVLGDVIESIAGAIYIDTKNDKKVVWRKMKRLLEPLATPDTLEIDPVKELHE 1312

Query: 1380 LCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
             CD     +K     +  +    + +Q K           +++ AK  AA  +LK ++
Sbjct: 1313 FCDPKTCSIKYTVAREDRVTSVAVEVQTKGTTYKATRTGLTKRDAKKLAAKSVLKDMK 1370


>gi|218195189|gb|EEC77616.1| hypothetical protein OsI_16596 [Oryza sativa Indica Group]
          Length = 1576

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 444/1487 (29%), Positives = 663/1487 (44%), Gaps = 215/1487 (14%)

Query: 34   GPSSSTN---SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN 90
            GPSS+         I R YQL + + A   N I  L TG GKT IAV+LI ++   I+  
Sbjct: 15   GPSSTRGEPKDPRTIARKYQLDLCKRAVEENIIVYLGTGCGKTHIAVLLIYELGHLIRK- 73

Query: 91   GFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVM 150
                      P+     +Q  VI   TDF+V+ YYG  G +  D Q W+ ++ +      
Sbjct: 74   ----------PS----REQAVVIASSTDFKVQCYYG-NGKNSRDHQEWENDMRE------ 112

Query: 151  TPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTA 208
                                                    +EFY+ +  +  P+VFGMTA
Sbjct: 113  ---------------------------------------FEEFYNSNSVEKFPRVFGMTA 133

Query: 209  SPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY------DQ 262
            SP++ KG S+ ++    I+ LE  L ++V ++ D  E+E  V S      FY      + 
Sbjct: 134  SPIIGKGGSNKLNYTKCINSLEELLHAKVCSV-DNEELESVVASPDMEVYFYGPVNHSNL 192

Query: 263  SKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD 322
            +  C  +L      S     ASL            D  D  K L K L   H  I++CL 
Sbjct: 193  TTICIKELDSLKLQSERMLRASLC-----------DFKDSQKKL-KSLWRLHENIIFCLQ 240

Query: 323  ELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
            ELG   A +A +  L       +  E+    S     F    L+   S L          
Sbjct: 241  ELGSFGALQAARTFLSFDGDKLDRREVDLNGSTSS--FAHHYLNGATSILSRNKTDGSHA 298

Query: 383  G-FDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT 441
            G FD  K ++  + S K   L+ +   +G    + CI+FV+RI  A+ +   ++ +  L 
Sbjct: 299  GSFDLEK-LEEPFFSNKFSVLINVLSRYGLQENMKCIVFVKRITVARAISNILQNLKCLE 357

Query: 442  HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501
                 +L G  +    ++      +++ F  G+VNLL AT V EEG+ +  C  V+RFDL
Sbjct: 358  FWKCEFLVGCHSGSKNMSRNKMDAIVQRFSSGEVNLLVATSVGEEGLDIQTCCLVVRFDL 417

Query: 502  PKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFL 561
            P+TV+S+IQSRGRAR   S+++++LER N      L   I  E  + +   SR     F 
Sbjct: 418  PETVASFIQSRGRARMTKSKYVVLLERENQSHEKLLNGYIAGESIMNEEIDSRTSNDMF- 476

Query: 562  KACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECE 621
              C  ++   Y V++TGAS++T  SV+L+H YC+ LP D ++TP P+F Y    E   C 
Sbjct: 477  -DC--LEENIYQVDNTGASISTACSVSLLHCYCDNLPRDMFFTPSPVFFYIDGIEGIICR 533

Query: 622  LTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISK 681
            L LP NA F+   G    +K+ +K+  CL+AC KLH++GAL D LLP     S  N +S 
Sbjct: 534  LILPPNAAFRQADGQPCLSKDEAKRDACLKACVKLHKLGALTDFLLPG--PGSRKNKVSV 591

Query: 682  KNESLPGA--GTTKRKELHGTTPIRALSGRWGEKCGVI--LHAYKFNFACSIVTEIYSGF 737
             N S        + R+ELH    I A+    G K   +  LH Y   F        Y  F
Sbjct: 592  TNNSSNNKVEDDSLREELHEML-IPAVLKPSGLKLDSLSNLHFYYVKFIPIPEDRRYQMF 650

Query: 738  VLLIESELDNDVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSK------AKCFQELF 790
             L + + L  +    +++L+L   + VKA +   G++  + ++ S       A  FQE+ 
Sbjct: 651  GLFVINPLPVEAETLQVDLHLARGRIVKAGIKHLGKIAFEKEKASSCSSMMLAHKFQEMC 710

Query: 791  FNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGIN 850
                  K+ +      S    L  +  +L   S  YLLLP++    +GD  + I+W  + 
Sbjct: 711  L-----KILLDRSEFTSPHVKLGNDV-TLEINSTFYLLLPIK-QKCYGD-RFMIDWPAVE 762

Query: 851  PCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHG----KDVIHLANGSVDAKN 906
             C                        SSP    P     H      + + L +G     +
Sbjct: 763  RCL-----------------------SSPIFKDPIDVSVHASYSSNESLRLLDGIFSKTD 799

Query: 907  LKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPL 966
            +   VV + H    + +  I++  +A S   G       T+  +F E++ I L HP QPL
Sbjct: 800  VVGSVVFSPHNNIFFFVDGILDEINAWSEHSG------ATYAEHFKERFRIELSHPEQPL 853

Query: 967  LRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKS 1024
            L+ KQ  N  NLL N        +G +        +  V +PPEL  L  +     +  S
Sbjct: 854  LKAKQIFNLRNLLHNRLPETTESEGREL------LEHFVELPPELCSLKVIGFSKDMGSS 907

Query: 1025 LYLLPSVMQRLESLMLASQLRE-EINCHSRNFHIPSSLILEALTTLGCCESFSMERLELL 1083
            L LLPS+M RLE+L++A +L++  ++       I +S ILEALTT  C E  S+ER E+L
Sbjct: 908  LSLLPSLMYRLENLLVAIELKDVMLSSFPEASQISASGILEALTTEKCLERISLERFEVL 967

Query: 1084 GDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRR 1143
            GD+ LKY V  H F+TY    EGQL+ RRS  V NS L++L   +KLQ YIRD  F+P +
Sbjct: 968  GDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQQFEPTQ 1027

Query: 1144 WVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEA 1203
            + APG    RP    C  D +EV L       D +      C   H W+  K IAD  E+
Sbjct: 1028 FFAPG----RPCKVVCNTD-VEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVES 1082

Query: 1204 LIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGY 1263
            LIGA+ V GG  AA   + W+GID D     +   +  +S+   +    +I  +E  IGY
Sbjct: 1083 LIGAFLVEGGFKAAFAFLHWIGIDVDFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGY 1142

Query: 1264 EFTVKFLLQEAITHASVQEFY--CYQNL-------------------------------- 1289
            +F  K LL +A  H S  +    CYQ L                                
Sbjct: 1143 KFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLR 1202

Query: 1290 ------------------YKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALG 1331
                              +KHL   S  L S I+++           D       PKALG
Sbjct: 1203 SLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALG 1262

Query: 1332 DLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKEN 1391
            D++ES +GAVL+D+  NL+ VW++   +L P++T   +   P+REL ELC   G+ +   
Sbjct: 1263 DIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLP 1322

Query: 1392 CTLKGE-MVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
              +K +   H ++ + +K  +++     R+ KAA+  AA + L KL+
Sbjct: 1323 KPMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLK 1369


>gi|414864448|tpg|DAA43005.1| TPA: hypothetical protein ZEAMMB73_941906 [Zea mays]
          Length = 1307

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 403/1359 (29%), Positives = 608/1359 (44%), Gaps = 253/1359 (18%)

Query: 389  AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYL 448
            AV  G ++ ++  L+++ L +  +     IIFVER++ A V+ +   ++P L  +  A L
Sbjct: 41   AVADGKVTPRVQALIKILLKYQHTEDFRAIIFVERVVTALVLPKVFAELPSLGFIRCASL 100

Query: 449  TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
             G   + +  + ++Q + +  FR G+V LL AT V EEG+ +  C+ VIRFDL KTV +Y
Sbjct: 101  IGHNNNQEMRSCQMQ-DTITKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAY 159

Query: 509  IQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDP-----EACFLKA 563
            IQSRGRAR+  S +ILMLERGN+     L +   SE ++   A+ R           L  
Sbjct: 160  IQSRGRARKPGSDYILMLERGNMSHEAFLRNARNSEETLRKEAIERTDLSHLDGTSMLSP 219

Query: 564  CTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-----Y 618
                    Y VESTGA V+ +S+V L+H YC  LPSD+Y   +P F  +  E+      Y
Sbjct: 220  VDISPDSMYQVESTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFIMQKHEKPGGSTEY 279

Query: 619  ECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNL 678
             C+L LP NAPF+ + GP   +  L++Q VCL AC+KLH++GA  D LLP      E   
Sbjct: 280  SCKLQLPCNAPFEKLEGPICSSIRLAQQAVCLAACKKLHEMGAFTDMLLPD-RGSGEGEK 338

Query: 679  ISKKNESLPGAGTTKRKE---------LHGTTPIRALSGRWGEKCGVILHAYKFNFAC-- 727
              + +E  P  GT + +E         LHG      LSGR G +    +  Y ++  C  
Sbjct: 339  TEQNDEGDPLPGTARHREFFPEGVAEILHGEW---ILSGRDGYQSSQFIKLYLYSVNCVN 395

Query: 728  ------SIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTV--KATVSSSGQVHLDADQ 779
                    VT++ S F L+  +ELD +V +  ++L+ V++T+  KA++   G + +   Q
Sbjct: 396  IGTSKDPFVTQL-SNFALIFGNELDAEVLSTTMDLF-VARTIITKASLVFRGPIEITESQ 453

Query: 780  MSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGD 839
            +   K F     + +   L V    S            + W P+  YL +P+       D
Sbjct: 454  LILLKSFHVRLMSIV---LDVDVDPS-----------TTPWDPAKAYLFVPVGAEKCM-D 498

Query: 840  GSWRINWSGINPCASV------VEFIKEKSFLGAAQCNNNGGNSS--------------- 878
                I+W+ +N   +       ++  +   +LG  +    G                   
Sbjct: 499  LLREIDWTLVNSIVNSDAWNNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGTAFGQK 558

Query: 879  -----------------------PCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAI 915
                                   P R          K  + +A+   DAK+L  MVV A 
Sbjct: 559  AHPTYGIRGAIAEFDVVKASGLVPGRGWGHFNDYQNKGKLFMADSCWDAKDLAGMVVTAA 618

Query: 916  HTGRIYSIVEIVNNSSAESPF---DGNTDD-DSKTFVNYFSEKYGIVLIHPGQPLLRLKQ 971
            H+G+ + +  I  N +AE+ F   +G     +  +F +Y+ +KYG+ L++  QPL+R + 
Sbjct: 619  HSGKRFYVDSICYNMNAENSFPRKEGYLGPLEYSSFADYYKQKYGVELVYKKQPLIRARG 678

Query: 972  SHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSV 1031
                 NLL    +   +  G  S    K    +V++PPEL +   +P S+V+    LPS+
Sbjct: 679  VSYCKNLLSPRFEHSEASNGEFSENLDKT--YYVYLPPELCLVHPLPGSLVRGAQRLPSI 736

Query: 1032 MQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYA 1091
            M+R+ES++LA QL++ I      + +P++ ILEALT   C E+F  ER ELLGD+ LK+ 
Sbjct: 737  MRRVESMLLAIQLKDIIG-----YPVPANKILEALTAASCQETFCYERAELLGDAYLKWV 791

Query: 1092 VSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLS 1151
            VS  LFL YP+KHEGQL+  R   V N  L++   ++ LQ YI+   F P RW APG L 
Sbjct: 792  VSRFLFLKYPQKHEGQLTRMRQQMVSNMILYQYALNKNLQSYIQADRFAPSRWAAPGVL- 850

Query: 1152 LRPVPCECGVDT------------------LEVPLDGKFFTQDTKVVVGKPCDMGHRWMG 1193
              PV  E   D+                  L    DG    +D ++     C   +R + 
Sbjct: 851  --PVFDEETRDSEPSIFDEEFTPSSELQKNLYDDYDGDSMQEDGEIEGDSSC---YRVLS 905

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1253
            SKT+AD  EALIG YYV GG IA  ++MKW+GI+A+L+   +          S +  IN 
Sbjct: 906  SKTLADVVEALIGVYYVAGGKIATNHLMKWIGINAELDPQEIPSSKPYNIPESIIKSIN- 964

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQN----------------------- 1288
               +E  +G +F  K LL EAITHAS       CYQ                        
Sbjct: 965  FDTLEGALGIKFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFTYTD 1024

Query: 1289 ---------------------------LYKHLQHCSTLLLSQITEYVKS----FPKPGET 1317
                                       L+ HL+H S+ L +QI E+VK       KPG  
Sbjct: 1025 LPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELSKPGFN 1084

Query: 1318 TDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLREL 1377
            +      KAPK LGD+ ESI GA+ +D+      VW++F+P+L P+VTPD L + P+REL
Sbjct: 1085 SFGLGDCKAPKVLGDIFESIAGAIFLDSGCATSVVWKVFQPLLDPMVTPDTLPMHPVREL 1144

Query: 1378 IELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
             E C      ++   +  G +   E+   L D + +G  Q   +K A+  AA   L  L+
Sbjct: 1145 QERCQQQAEGLEYKASRTGNVATVEV---LVDGIQIGVAQNPQKKMAQKLAARNALVVLK 1201

Query: 1438 VCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGT 1497
              E    K     G                    +++ G++                   
Sbjct: 1202 EKETAAKKDTEKDG--------------------EKKNGSQFT----------------- 1224

Query: 1498 PVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSK 1557
                         R +L  +C    WPMP +             C           FV  
Sbjct: 1225 -------------RQTLNDICLRRQWPMPQYR------------CINEGGPAHAKRFVYA 1259

Query: 1558 ITLHIPEFG-NVECNGDPRADKKSSFDSAALIMLHELER 1595
            + ++  + G   EC G+P    K + DSAA+++L  L R
Sbjct: 1260 VRVNTSDSGWTDECIGEPMPSVKKAKDSAAVLLLELLNR 1298


>gi|297832974|ref|XP_002884369.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330209|gb|EFH60628.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 2033

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 425/1485 (28%), Positives = 675/1485 (45%), Gaps = 262/1485 (17%)

Query: 34   GPSSSTNSINFIP----RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS 89
            G S +T+ ++  P    R YQ++  E A ++NTI   ETG+GKT+IA+ML++       S
Sbjct: 725  GYSLTTDQVSASPLHFARSYQVEALEKAIKQNTIVFFETGSGKTLIAIMLLRSY-----S 779

Query: 90   NGFKK----LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN 145
              F+K      +FL P V LV QQ + +++HTD +V +                      
Sbjct: 780  YLFRKPSPCFCVFLVPQVVLVTQQAEALKMHTDLQVVQ---------------------- 817

Query: 146  DVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFG 205
             VLVMTP ILLDALR +FL+L ++  +++DECHHA G HPY  IM+              
Sbjct: 818  -VLVMTPAILLDALRHSFLNLSMIKVLIVDECHHAGGKHPYACIMR-------------- 862

Query: 206  MTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKF 265
                                           V+T E+++ +  FVP +    ++Y     
Sbjct: 863  -------------------------------VYTCENESVLAGFVPFSTPRFKYYQHMGI 891

Query: 266  CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKT---LRKQLSDYHAKILYCLD 322
              S     +E         L KL          +D K  T   + K+LS   + + YCLD
Sbjct: 892  PSSKRASLVE--------KLEKLMIKHRLSLATLDLKSSTVDSIEKRLSRISSTLTYCLD 943

Query: 323  ELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
            +LG++ A +A     + +  +Q +  ++ + ++     +++       A  LAD   +  
Sbjct: 944  DLGILLAQKAA----QSLSASQNDFVLWGELNMSSVTLVKKFCSDASQAF-LAD---IPN 995

Query: 383  GFDYSKA-----VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437
            G ++S A     V+ G +++K   L++  LS+     + CIIFV+R+I A V+E  + ++
Sbjct: 996  GLNWSVANINGKVEAGLLTSKTVCLIETLLSYSSLENIRCIIFVDRVITAIVLESLLAEI 1055

Query: 438  -PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496
             P   +    Y+ G+ + +   T K Q E++E FR G VN++ AT ++EEG+ V +C+ V
Sbjct: 1056 LPNCNNWKTKYVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLV 1115

Query: 497  IRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDP 556
            IRFD    + S+IQSRGRAR  NS +++M+E G+L  +++L   +   + + + +L    
Sbjct: 1116 IRFDPASNICSFIQSRGRARMQNSDYLMMVESGDLLTQSRLKKYLSGGKRMREESLHHS- 1174

Query: 557  EACFLKACTYVKTKS----YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYK 612
                L  C  +   S    + VESTGA+VT  SSV+LI+ YC  LPSD+Y+ P P F   
Sbjct: 1175 ----LVPCPPLPDDSDELFFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVN 1230

Query: 613  SAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPS--V 670
              + +  C L LP + P + +      N  + KQ VCLEAC +LH+VGAL+DHL+P   V
Sbjct: 1231 KDQGS--CTLYLPKSCPVKEV--KAQANNKVLKQTVCLEACIQLHKVGALSDHLVPDMVV 1286

Query: 671  EEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIV 730
             E     L  +K +  P        E         L  ++  +     H Y      S  
Sbjct: 1287 AETVAQKL--EKIQYNPEQPCYFPPE---------LVSQFSVQPETTYHFYLIRMKPSSQ 1335

Query: 731  TEIYSGFVLL-IESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQEL 789
               +   VLL     L++D+GN    L     T+  T+S  G  HL  +++   + FQ  
Sbjct: 1336 RNFHLNDVLLGTRVVLEDDIGNTGFRLEDHKGTIAVTLSYVGAFHLTQEEVLLCRRFQIT 1395

Query: 790  FFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGI 849
             F  L     VK+         L+         +  YLL+P    +T    +  I+W  I
Sbjct: 1396 LFRVLLDH-SVKNLMEALNGLLLRDGI------ALDYLLVP----STHSHETSPIDWEVI 1444

Query: 850  NPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKD 909
                  V     ++      C+ NG +                 ++H  +G      +++
Sbjct: 1445 RS----VNLTCHEALEKHVNCSINGASR----------------ILHTKDGLFCTCVVQN 1484

Query: 910  MVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRL 969
             +V   H G  Y    ++NN +A S F    +   +T++ Y+ E++GI L    +PLL  
Sbjct: 1485 ALVYTPHNGYFYCTKGVLNNINANS-FLTKRNSGDQTYIEYYEERHGIQLNFVDEPLLNG 1543

Query: 970  KQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPIS--VVKSLYL 1027
            +     HN L            +K     +  +  V +PPEL   +  PIS  V+ S   
Sbjct: 1544 RHIFTLHNYL----------HMTKKKKEKEHDKEFVELPPELCHVILSPISVDVIYSYTF 1593

Query: 1028 LPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSV 1087
            +PSVMQR+ESL++A  L++ I       +IP+  +LEA+TT  C + F +E LE LGDS 
Sbjct: 1594 IPSVMQRIESLLIAYNLKKSIP----KVNIPTIKVLEAITTKKCQDQFHLESLETLGDSF 1649

Query: 1088 LKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAP 1147
            LKYAV   LF      HEG LS ++   + N  L + G  +KLQG+IR+  F+P+ W+ P
Sbjct: 1650 LKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRNECFEPKGWMVP 1709

Query: 1148 GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGA 1207
            GQ S          DTL          +   + V        R +  K++AD  E+LIGA
Sbjct: 1710 GQHSAAYALVN---DTLP---------ESRNIYVA-----SRRNLKRKSVADVVESLIGA 1752

Query: 1208 YYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTV 1267
            Y   GG ++AL  M W+GI  D   + ++    R S       +N +  +ES + Y F  
Sbjct: 1753 YLSEGGELSALMFMNWVGIKVDFTTTKIE----RESPIQAEKLVN-VGYMESLLNYSFED 1807

Query: 1268 KFLLQEAITHASVQ-----------EFY-------------------------------- 1284
            K LL EA+TH S             EF                                 
Sbjct: 1808 KSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSAS 1867

Query: 1285 ----CY------QNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGP--SMKAPKALGD 1332
                CY      +NL+KH+ H S +L   I+  V  F +    +  G    +  PK LGD
Sbjct: 1868 VNNECYALVAVKENLHKHILHASHVLHKHISRTVSEFEQSSLQSTFGWECDISFPKVLGD 1927

Query: 1333 LLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENC 1392
            ++ES+ GA+ +D+  N + V+   KP+L  ++TP+ ++L P+REL ELC    + + +  
Sbjct: 1928 VIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQKSQFELSK-- 1985

Query: 1393 TLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
                +  +  + ++ K++      +   +K AK  A  ++L  L+
Sbjct: 1986 --AKDFNYFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLK 2028


>gi|6714410|gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana]
          Length = 2042

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 408/1411 (28%), Positives = 637/1411 (45%), Gaps = 252/1411 (17%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQ++  E A ++NTI  LETG+GKT+IA+ML++  A   +        +FL P V LV
Sbjct: 751  RSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYLFRKPS-PCFCVFLVPQVVLV 809

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
             QQ + +++HTD +V +                       VLVMTP ILLDALR +FLSL
Sbjct: 810  TQQAEALKMHTDLKVVQ-----------------------VLVMTPAILLDALRHSFLSL 846

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQI 226
             ++  +++DECHHA G HPY  IM+                                   
Sbjct: 847  SMIKVLIVDECHHAGGKHPYACIMR----------------------------------- 871

Query: 227  SELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG---SDLKGKLEVSWSKFDA 283
                      V+T E+++ +  FVP +  S ++Y   K      + L  KLE    K   
Sbjct: 872  ----------VYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRASLVEKLERLTIKHRL 921

Query: 284  SLSKLQGSQLNCYKDMDDKH-KTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLK 342
            SL  L         D++     ++ K+L    + + YCLD+LG++ A +A +        
Sbjct: 922  SLGTL---------DLNSSTVDSVEKRLLRISSTLTYCLDDLGILLAQKAAQSLSASQND 972

Query: 343  AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKA-----VDLGYIST 397
            +    E+   S    K F  +      + +P         G ++S A      + G ++ 
Sbjct: 973  SFLWGELNMFSVALVKKFCSDASQEFLAEIPQ--------GLNWSVANINGNAEAGLLTL 1024

Query: 398  KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-PFLTHLTVAYLTGSTTSVD 456
            K   L++  L +     + CIIFV+R+I A V+E  + ++ P   +    Y+ G+ + + 
Sbjct: 1025 KTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNNWKTKYVAGNNSGLQ 1084

Query: 457  ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516
              T K Q E++E FR G VN++ AT ++EEG+ V +C+ VIRFD    + S+IQSRGRAR
Sbjct: 1085 NQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGRAR 1144

Query: 517  QHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----Y 572
              NS +++M+E G+L  +++L   +   + + + +L        L  C  +   S    +
Sbjct: 1145 MQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHS-----LVPCPPLPDDSDEPLF 1199

Query: 573  IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQT 632
             VESTGA+VT  SSV+LI+ YC  LPSD+Y+ P P F     + +  C L LP + P + 
Sbjct: 1200 RVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGS--CTLYLPKSCPVKE 1257

Query: 633  IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTT 692
            +      N  + KQ VCL+AC +LH+VGAL+DHL+P +        +S+K E +      
Sbjct: 1258 V--KAEANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVAET---VSQKLEKI------ 1306

Query: 693  KRKELHGTTPIR---ALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLL-IESELDND 748
               + +   P      L  ++  +     H Y      +     +   VLL     L++D
Sbjct: 1307 ---QYNTEQPCYFPPELVSQFSAQPETTYHFYLIRMKPNSPRNFHLNDVLLGTRVVLEDD 1363

Query: 749  VGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSR 808
            +GN    L     T+  T+S  G  HL  +++   + FQ   F  L     V++      
Sbjct: 1364 IGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLLDH-SVENLMEALN 1422

Query: 809  EFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAA 868
               L+         +  YLL+P    +T    +  I+W  I         + EK      
Sbjct: 1423 GLHLRDGV------ALDYLLVP----STHSHETSLIDWEVIRSVNLTSHEVLEKH----E 1468

Query: 869  QCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVN 928
             C+ NG +                 ++H  +G      +++ +V   H G +Y    ++N
Sbjct: 1469 NCSTNGASR----------------ILHTKDGLFCTCVVQNALVYTPHNGYVYCTKGVLN 1512

Query: 929  NSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGS 988
            N +  S        D +T++ Y+ E++GI L    +PLL  +     H+ L         
Sbjct: 1513 NLNGNSLLTKRNSGD-QTYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYL--------- 1562

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLLPSVMQRLESLMLASQLRE 1046
               +K     +  +  V +PPEL   +  PISV  + S   +PSVMQR+ESL++A  L++
Sbjct: 1563 -HMAKKKKEKEHDREFVELPPELCHVILSPISVDMIYSYTFIPSVMQRIESLLIAYNLKK 1621

Query: 1047 EINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEG 1106
             I       +IP+  +LEA+TT  C + F +E LE LGDS LKYAV   LF      HEG
Sbjct: 1622 SIP----KVNIPTIKVLEAITTKKCEDQFHLESLETLGDSFLKYAVCQQLFQHCHTHHEG 1677

Query: 1107 QLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEV 1166
             LS ++   + N  L + G  +KLQG+IRD  F+P+ W+ PGQ S          DTL  
Sbjct: 1678 LLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQSS---AAYSLVNDTL-- 1732

Query: 1167 PLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1226
                    +   + V        R +  K++AD  E+LIGAY   GG +AAL  M W+GI
Sbjct: 1733 -------PESRNIYVA-----SRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGI 1780

Query: 1227 DADLEVSLVD-DCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ---- 1281
              D   + +  D   +A       ++  +  +ES + Y F  K LL EA+TH S      
Sbjct: 1781 KVDFTTTKIQRDSPIQAE------KLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEI 1834

Query: 1282 -------EFY------------------------------------CY------QNLYKH 1292
                   EF                                     CY       NL+KH
Sbjct: 1835 PRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKH 1894

Query: 1293 LQHCSTLLLSQITEYVKSFPKPGETTDSG--PSMKAPKALGDLLESIVGAVLIDTKLNLD 1350
            + + S  L   I+  V  F +    +  G    +  PK LGD++ES+ GA+ +D+  N +
Sbjct: 1895 ILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKE 1954

Query: 1351 EVWRIFKPILSPIVTPDKLELPPLRELIELC 1381
             V+   KP+L  ++TP+ ++L P+REL ELC
Sbjct: 1955 VVFASIKPLLGCMITPETVKLHPVRELTELC 1985


>gi|218193216|gb|EEC75643.1| hypothetical protein OsI_12390 [Oryza sativa Indica Group]
          Length = 1318

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 396/1396 (28%), Positives = 638/1396 (45%), Gaps = 235/1396 (16%)

Query: 78   MLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137
            ML++  A  ++    ++  +FL PTV LV QQ  V+  HTD  V+++ G  GVD WD+  
Sbjct: 1    MLLRAYAHRVRRPDSRRFAVFLVPTVVLVGQQARVVEQHTDLVVKQFCGEMGVDFWDAAT 60

Query: 138  WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-- 195
            W+ ++   +VLVMTPQILLD LR +F  L  +  ++ DECH A GN PY  I KEFYH  
Sbjct: 61   WRSQLEDGEVLVMTPQILLDNLRHSFFRLQDIALLIFDECHRARGNAPYACIFKEFYHPQ 120

Query: 196  ----KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVP 251
                 SD  P++FGM+A+ +  K ++   +   QISE+E+ ++S+V+T++ ++ +  ++P
Sbjct: 121  LNSSASDPLPRIFGMSATLIYSKDLNQH-NYSKQISEIENLMNSKVYTVDSESALSEYIP 179

Query: 252  SAKESCRFYDQSKFCGSDLKGKL-----EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTL 306
             A      +D S    S+L   +      ++    +A   KL GS L          +  
Sbjct: 180  FASTKIVHFDDSNI-SSELHANILSCLNGLTEKHIEALDRKLHGSSL----------ENA 228

Query: 307  RKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL- 365
            ++++S  H   +YCL  LG+  A +A             E + Y ++SL    F  E L 
Sbjct: 229  KRRISKLHHTFVYCLYNLGVWLAAKAA------------EVQSYEENSLS---FWGETLD 273

Query: 366  -HVIGSALPLADKI------FLD---FGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQV 415
             +V G     ++++      FL     G  +      G ++ K+H L++  L +     +
Sbjct: 274  KNVEGFIRNYSEEVHRELSCFLKNGHIGEKFPADSQDGILTPKVHCLIRTLLQYRHMQDL 333

Query: 416  LCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475
             CI+FV+R+I + V+E  +  +  ++   V ++ GS   + + + K   E++ESFR GKV
Sbjct: 334  RCIVFVQRVITSIVLEPLLSSIHQMSGWNVKHMAGSRPGLLSQSRKNHTEIVESFRKGKV 393

Query: 476  NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRN 535
            +++ AT ++EEG+ VP+C+ VIRFD   TV S+IQSRGRAR  NS ++L++ R       
Sbjct: 394  HIIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQSRGRARMENSDYLLLIGR------- 446

Query: 536  KLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCE 595
             +F+ +         AL  D EA       +   K ++       +  + S+ L    C+
Sbjct: 447  HVFNFV---------ALG-DVEA-------HTNAKKFL---ASGQIMREESLRLGSISCQ 486

Query: 596  MLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEK 655
             L +  Y+ P P F    A     C L LP ++P QT+        ++ K+ VCL+AC++
Sbjct: 487  PLENTLYFKPLPRFDIDKASGT--CTLHLPKSSPVQTV--NVEGEGSILKETVCLKACQE 542

Query: 656  LHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSG-RWGEKC 714
            LH +GAL D LLP ++ P +           P      + E     P   +   R   + 
Sbjct: 543  LHAIGALTDSLLPELDVPCDEE---------PDIVVENKIEQPSYFPEEFVDNWRSFSRL 593

Query: 715  GVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVH 774
            G I + YK +      T   +  +L ++ +L +D  +   +L         T+   G +H
Sbjct: 594  G-IYYCYKISLEGCPKTASPTDILLALKCDLGSDFTSSSFKLPGGQDNASVTMKYVGIIH 652

Query: 775  LDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSP-SYMYLLLPLEI 833
            L+ +Q+  A+ FQ    + L G   ++  S+G + F      + +  P   +YLLLPL  
Sbjct: 653  LNQEQVIIARRFQTTILSFLIGDDHLEV-SNGIKYF------HEMQVPIGVVYLLLPLV- 704

Query: 834  VNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKD 893
                   S RI+W  +              F  +     N  + + C +      C   D
Sbjct: 705  -------SGRIDWCSMK-------------FSSSPIYEANNKHMTHCHS------CKDID 738

Query: 894  VIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNT-----DDDSKTFV 948
            ++   +G      LK+ +V   H    Y I   ++        D N+     D    T+ 
Sbjct: 739  LLQTKDGPFCRCILKNSIVCTPHNNIFYVISGFLD-------LDANSCLPQHDGIVVTYK 791

Query: 949  NYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMP 1008
            +YF  ++G+ L    QPLL   +     N L N         G +           V +P
Sbjct: 792  DYFKTRHGLTLTFENQPLLAGSKHVKARNFLHNCYSKKEKEPGDRYS---------VELP 842

Query: 1009 PELLVRVDVPISV--VKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            PEL   +  P+S   +     +PS+M R++ ++L+ +L+ ++    + F +P   ILEAL
Sbjct: 843  PELCRIIMSPVSANNLHIFSYVPSIMFRIQCMLLSVKLKVQLGPTVQQFDVPVLKILEAL 902

Query: 1067 TTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
            TT  C E FS E LE LGDS LKY  + HLF  Y  +HEG L+  +   + N+ L +L  
Sbjct: 903  TTKKCQEEFSQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALCQLAC 962

Query: 1127 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD 1186
               L GYI    F+PR W+         +PC   +D  E          + K+    P  
Sbjct: 963  SSNLVGYIHAEEFNPRDWI---------IPC---LDYDE--------RDNKKISFLAPNG 1002

Query: 1187 M-GHRWMG--SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRAS 1243
            M   R M   SK IAD  EALIGAY    G  AA  +MK LG++ +    +  +      
Sbjct: 1003 MYSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGMNIEFHTEIPVERKISMK 1062

Query: 1244 LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ---------------------- 1281
               ++     ++ +E  +GY+F    LL EA+TH S Q                      
Sbjct: 1063 AEEFI----NVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHL 1118

Query: 1282 --EFY-----------------------CYQN------LYKHLQHCSTLLLSQITEYV-- 1308
              E+Y                       CY +      L KH+ H S+ L  +++ Y+  
Sbjct: 1119 FTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEE 1178

Query: 1309 --KSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTP 1366
              +SF  P    ++G  +  PK LGD++ESI GA+ +D+K + + VWR  K +L P+ TP
Sbjct: 1179 FGQSFTGPSYGWEAGIGL--PKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATP 1236

Query: 1367 DKLELPPLRELIELCD 1382
            + +E  P++ L E CD
Sbjct: 1237 ETIEPDPVKGLQEFCD 1252


>gi|414879098|tpg|DAA56229.1| TPA: hypothetical protein ZEAMMB73_255524 [Zea mays]
          Length = 595

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 271/600 (45%), Positives = 362/600 (60%), Gaps = 72/600 (12%)

Query: 1066 LTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG 1125
            +TTL CCE FSMERLELLGDSVLKYAVS HLF+T+  KHEGQLS+RR   +CN+TL++LG
Sbjct: 1    MTTLRCCEDFSMERLELLGDSVLKYAVSAHLFMTFLNKHEGQLSSRRQETICNATLYRLG 60

Query: 1126 TDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPC 1185
             +R++QGYIRD+AFDPRRW+APGQLS RP PCEC V++ EV  +      D  +++GK C
Sbjct: 61   IERRIQGYIRDAAFDPRRWLAPGQLSRRPCPCECPVNS-EVVTEDIHRIDDKSIIIGKAC 119

Query: 1186 DMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLR 1245
            D GHRW+ SKTI+DC EALIGAYYV GGL AA  ++KW  I+ ++E  L+ + ++ AS+R
Sbjct: 120  DKGHRWICSKTISDCVEALIGAYYVEGGLKAAFAVLKWFQIETEIEEELIMEALSSASVR 179

Query: 1246 SYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE---FYCYQ--------------- 1287
            +Y+P+++ ++ +E+K+GY F +K LL EA+TH+S QE    YCYQ               
Sbjct: 180  NYLPKVDVVELLEAKLGYTFQMKGLLIEALTHSSQQESGATYCYQRLEFLGDAVLDILIT 239

Query: 1288 -----------------------------------NLYKHLQHCSTLLLSQITEYVKSFP 1312
                                               NL++ LQH S  L  QITEYV S  
Sbjct: 240  RHLFLSHKDTDEGELTDLRSASVNNENFAQVAVKHNLHQFLQHSSGFLQDQITEYVNSLE 299

Query: 1313 KP----GETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDK 1368
                       SGP  + PK LGD++ESI GA+LID+KL+LD VWR+FKP+LSPIVTP+ 
Sbjct: 300  SSSMDRASLLSSGPC-RGPKVLGDIVESIAGAILIDSKLDLDLVWRVFKPLLSPIVTPEN 358

Query: 1369 LELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKA 1428
            LELP  REL E  D  GYF+   C  +G+   A L LQLKD+LLV +G  +++  AK  A
Sbjct: 359  LELPRFRELNEWSDKNGYFIGIKCENRGDSTMAILNLQLKDLLLVRQGCGKNKVDAKAHA 418

Query: 1429 ASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKE-----DLPEPPSCKRQKGTEAAIPA 1483
            AS LL+ LE     I + AS   +L  +   T K      D+ +  +    +  E A+ +
Sbjct: 419  ASLLLRDLEEKGLIIPRNASRVEQLEKNS-GTVKHCNNVLDVMDTQNVAPPRQKEVAVLS 477

Query: 1484 GDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCE 1543
              +        +  P+V  + + KGGPR SL++ CK + WPMPTFE  + +       C 
Sbjct: 478  TTTPGS----VLDKPLVVKVKLSKGGPRISLYESCKKLQWPMPTFEFVKVEPSVCSSSCG 533

Query: 1544 GLEKRT--GFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1601
              +K    GF +F S ITLHIP    +   GD RADKKSS DSAAL+ML+EL+RQ +  +
Sbjct: 534  SSQKVAPQGF-AFASTITLHIPNGDVISLTGDGRADKKSSQDSAALLMLYELQRQRRFQV 592



 Score = 49.3 bits (116), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 1061 LILEALTTLGCCES---FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1117
            L++EALT     ES   +  +RLE LGD+VL   ++ HLFL++    EG+L+  RS +V 
Sbjct: 204  LLIEALTHSSQQESGATYCYQRLEFLGDAVLDILITRHLFLSHKDTDEGELTDLRSASVN 263

Query: 1118 NSTLHKLGTDRKLQGYIRDSA 1138
            N    ++     L  +++ S+
Sbjct: 264  NENFAQVAVKHNLHQFLQHSS 284


>gi|222629185|gb|EEE61317.1| hypothetical protein OsJ_15421 [Oryza sativa Japonica Group]
          Length = 1632

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 408/1355 (30%), Positives = 604/1355 (44%), Gaps = 187/1355 (13%)

Query: 6    NSLKRSFGEVHSPNPPDMGSSGHD----HAVDGPSSSTNSINFIPRIYQLKVFEVAKRRN 61
            N   RS    +    PD    G D    +   GP   +++       YQL + + A   N
Sbjct: 41   NRTTRSARAQYRRKRPDQKPGGEDSPSPYRTSGPHLCSDAR------YQLDLCKRAVEEN 94

Query: 62   TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV 121
             I  L TG GKT IAV+LI ++   I+            P+     +Q  VI   TDF+V
Sbjct: 95   IIVYLGTGCGKTHIAVLLIYELGHLIRK-----------PS----REQAVVIASSTDFKV 139

Query: 122  EEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181
            + YYG  G +  D Q W+ ++ +                                     
Sbjct: 140  QCYYG-NGKNSRDHQEWENDMRE------------------------------------- 161

Query: 182  GNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFT 239
                     +EFY+ +  +  P+VFGMTASP++ KG S+ ++    I+ LE  L ++V +
Sbjct: 162  --------FEEFYNSNSVEKFPRVFGMTASPIIGKGGSNKLNYTKCINSLEELLHAKVCS 213

Query: 240  IEDKTEMEVFVPSAKESCRFY------DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQL 293
            + D  E+E  V S      FY      + +  C  +L      S     ASL        
Sbjct: 214  V-DNEELESVVASPDMEVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASLC------- 265

Query: 294  NCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQS 353
                D  D  K L K L   H  I++CL ELG   A +A +  L       +  E+    
Sbjct: 266  ----DFKDSQKKL-KSLWRLHENIIFCLQELGSFGALQAARTFLSFDGDKLDRREVDLNG 320

Query: 354  SLQCKYFLEEVLHVIGSALPLADKIFLDFG-FDYSKAVDLGYISTKLHELLQLFLSFGKS 412
            S     F    L+   S L          G FD  K ++  + S K   L+ +   +G  
Sbjct: 321  STSS--FAHHYLNGATSILSRNKTDGSHAGSFDLEK-LEEPFFSNKFSVLINVLSRYGLQ 377

Query: 413  TQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRG 472
              + CI+FV+RI  A+ +   ++ +  L      +L G  +    ++      +++ F  
Sbjct: 378  ENMKCIVFVKRITVARAISNILQNLKCLEFWKCEFLVGCHSGSKNMSRNKMDAIVQRFSS 437

Query: 473  GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK 532
            G+VNLL AT V EEG+ +  C  V+RFDLP+TV+S+IQSRGRAR   S+++++LER N  
Sbjct: 438  GEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARMTKSKYVVLLERENQS 497

Query: 533  QRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 592
                L   I  E  + +   SR     F   C  ++   Y V++TGAS++T  SV+L+H 
Sbjct: 498  HEKLLNGYIAGESIMNEEIDSRTSNDMF--DC--LEENIYQVDNTGASISTACSVSLLHC 553

Query: 593  YCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEA 652
            YC+ LP D ++TP P+F Y    E   C L LP NA F+   G    +K+ +K+  CL+A
Sbjct: 554  YCDNLPRDMFFTPSPVFFYIDGIEGIICRLILPPNAAFRQADGQPCLSKDEAKRDACLKA 613

Query: 653  CEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGA--GTTKRKELHGTTPIRALSGRW 710
            C KLH++GAL D LLP     S  N +S  N S        + R+ELH    I A+    
Sbjct: 614  CVKLHKLGALTDFLLPG--PGSRKNKVSVTNNSSNNKVEDDSLREELHEML-IPAVLKPS 670

Query: 711  GEKCGVI--LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV-SKTVKATV 767
            G K   +  LH Y   F        Y  F L + + L  +    +++L+L   + VKA +
Sbjct: 671  GLKLDSLSNLHFYYVKFIPIPEDRRYQMFGLFVINPLPVEAETLQVDLHLARGRIVKAGI 730

Query: 768  SSSGQVHLDADQMSK------AKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWS 821
               G++  + ++ S       A  FQE+       K+ +      S    L  +  +L  
Sbjct: 731  KHLGKIAFEKEKASSCSSMMLAHKFQEMCL-----KILLDRSEFTSPHVKLGNDV-TLEI 784

Query: 822  PSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCR 881
             S  YLLLP++    +GD  + I+W  +  C                        SSP  
Sbjct: 785  NSTFYLLLPIK-QKCYGD-RFMIDWPAVERCL-----------------------SSPIF 819

Query: 882  TSPCKTGCHG----KDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFD 937
              P     H      + + L +G     ++   VV + H    + +  I++  +A S   
Sbjct: 820  KDPIDVSVHASYSSNESLRLLDGIFSKTDVVGSVVFSPHNNIFFFVDGILDEINAWSEHS 879

Query: 938  GNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMN 997
            G       T+  +F E++ I L HP QPLL+ KQ  N  NLL N        +G      
Sbjct: 880  G------ATYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHNRLPETTESEGR----- 928

Query: 998  TKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLRE-EINCHSRN 1054
             +  +  V +PPEL  L  +     +  SL LLPS+M RLE+L++A +L++  ++     
Sbjct: 929  -ELLEHFVELPPELCSLKVIGFSKDMGSSLSLLPSLMYRLENLLVAIELKDVMLSSFPEA 987

Query: 1055 FHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSW 1114
              I +S ILEALTT  C E  S+ER E+LGD+ LKY V  H F+TY    EGQL+ RRS 
Sbjct: 988  SQISASGILEALTTEKCLERISLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSD 1047

Query: 1115 AVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFT 1174
             V NS L++L   +KLQ YIRD  F+P ++ APG    RP    C  D +EV L      
Sbjct: 1048 VVNNSHLYELSIRKKLQVYIRDQQFEPTQFFAPG----RPCKVVCNTD-VEVRLHQMDIH 1102

Query: 1175 QDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSL 1234
             D +      C   H W+  K IAD  E+LIGA+ V GG  AA   + W+GID D     
Sbjct: 1103 PDNRENCNLRCTRSHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDVDFNNPA 1162

Query: 1235 VDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY--CYQNLYKH 1292
            +   +  +S+   +    +I  +E  IGY+F  K LL +A  H S  +    CYQ     
Sbjct: 1163 LYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQK---- 1218

Query: 1293 LQHCSTLLLSQITEYV------KSFP--KPGETTD 1319
                +  L   + EYV       ++P  KPG+ TD
Sbjct: 1219 ----TEFLGDAVLEYVITSYLYSTYPDIKPGQITD 1249



 Score = 48.9 bits (115), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 1078 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGY-IRD 1136
            +RLE LGD+VL+Y ++ +L+ TYP    GQ++  RS AV N +L     ++ +  + I+D
Sbjct: 1308 KRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKD 1367

Query: 1137 S 1137
            S
Sbjct: 1368 S 1368



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 1272 QEAITHASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALG 1331
             +++ +A+V+     ++++KHL   S  L S I+++           D       PKALG
Sbjct: 1348 NDSLAYAAVE-----KSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALG 1402

Query: 1332 DLLESIVGAVLIDTKLNLDEVWRIF 1356
            D++ES +GAVL+D+  NL+ VW+ +
Sbjct: 1403 DIVESCIGAVLLDSGFNLNYVWKNY 1427



 Score = 45.8 bits (107), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 1078 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGY-IRD 1136
            ++ E LGD+VL+Y ++ +L+ TYP    GQ++  RS AV N +L     ++ +  + I+D
Sbjct: 1217 QKTEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKD 1276

Query: 1137 S 1137
            S
Sbjct: 1277 S 1277


>gi|302755618|ref|XP_002961233.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii]
 gi|300172172|gb|EFJ38772.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii]
          Length = 1291

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 295/926 (31%), Positives = 470/926 (50%), Gaps = 112/926 (12%)

Query: 49  YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
           YQL+V E   + NTI  LETGAGKT IA ML   +A  +     K++ +FL PTV L  Q
Sbjct: 2   YQLEVLEKVLKENTIVFLETGAGKTHIAAMLFNKLADRLSMPEEKRIGVFLTPTVALADQ 61

Query: 109 QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI 168
           Q +VI   T  +V  Y+G + +D WD + W +EI+ + VLVMT Q+L ++L+ + + +++
Sbjct: 62  QANVISSSTRLKVGIYHGGQ-MDTWDVRKWSEEIDSHQVLVMTAQVLFNSLQLSAIRMEM 120

Query: 169 VCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISE 228
           +  ++ DECH A  NHPY  +MK                                     
Sbjct: 121 IEVLIFDECHRAQNNHPYASVMK------------------------------------- 143

Query: 229 LESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKL 288
                   ++TI  + E+E  VP+      +YD++  C  +L+  L     K        
Sbjct: 144 --------IYTITSRAELEEKVPTPFYRNLYYDKAHHCFKELRRCLTDLLDK-------- 187

Query: 289 QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKI------CLEKVLK 342
               +N    +D+  K  R + S+ +  I  CL +LGL  A    K+       +E +LK
Sbjct: 188 ----VNVIVYLDENKK--RSKFSNLYNAITSCLLDLGLWSAVLVKKLHFLAVLAVEVLLK 241

Query: 343 AQEEC---EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKL 399
              E     +  +     + FL+E  +++ S +P      +    D  KAV+ G I++K+
Sbjct: 242 IDPEGTKPSVENEDKNDEQRFLKEAYNILKSFVPGDSVSSISSPEDAKKAVNSGLITSKV 301

Query: 400 HELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALT 459
             LL++ + +       C+IFVER++  +V+ R +     +      Y+ G T   D  T
Sbjct: 302 KALLKILVRYRNVEPFRCMIFVERVVVTQVLARLLSTFKAIDFCRTGYIVGVTA--DGNT 359

Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
            K   E +++F+ G++N+L  T V EEG+ V +C+ V+RFD+ +T+ S+IQSRGR R+ +
Sbjct: 360 TK-HVETVKAFKSGELNVLICTSVAEEGLDVQSCNCVVRFDICRTLRSFIQSRGRGRKRD 418

Query: 520 SQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGA 579
           + ++ +LERGNL+Q + L +++ SE  +   ALSR  +   +          +   ++GA
Sbjct: 419 ATYMFLLERGNLEQESLLMELVNSEELMRAEALSRMSKTIEITPLIDADL-DFFYTTSGA 477

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKP---IFKYKS-AEEAYECELTLPSNAPFQTIVG 635
            ++TD +V+ I+RYC  LP D++Y PKP   + K +S  EE + C +T P NAP   + G
Sbjct: 478 CISTDGAVSFIYRYCSQLPGDRFYNPKPEIEVTKCESDNEELFSCTITFPPNAPLHVLTG 537

Query: 636 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRK 695
              RNK L+K++ CLEAC +L  +GAL +   P V E        K     PG G+TK K
Sbjct: 538 LPKRNKQLAKKVACLEACRQLDALGALGERHPPEVRE-------EKMASEGPGLGSTKLK 590

Query: 696 ELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFEL 754
           EL  +        +W      ++LH Y   F        Y+ F LL ++ LD+DVGN E+
Sbjct: 591 ELFPSIKSTTYQRQWITTSTDIVLHIYALIFHPEENGSTYTNFGLLFDAALDDDVGNIEV 650

Query: 755 ELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKL-FVKSKSSGSREFFL 812
            LYL  ++ VKA +SS+GQ  +D+ Q++ AK +QE+ FNG F +L F + K+  +    L
Sbjct: 651 NLYLTKNRAVKAKLSSAGQRRVDSVQLAAAKAYQEIMFNGAFSRLVFREDKNDRTLATCL 710

Query: 813 KRET---NSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQ 869
              T   N LWS +  YLLLP+       DGS  I+W+ +  CA   + +        + 
Sbjct: 711 LSSTEKANELWSET--YLLLPIL------DGSCDIDWNIVTRCADAAKLL-------PSL 755

Query: 870 CNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNN 929
           C +    +  C   P  TG     +I+ A+G V    L+D VVL +HTG+++SIVE++ +
Sbjct: 756 C-SELNKTEVCMERP-DTG-----LIYTASGPVSPGALQDAVVLTVHTGKLFSIVEVLED 808

Query: 930 SSAESPFDGNTDDDSKTFVNYFSEKY 955
             A+S F  N + +  T+  ++  KY
Sbjct: 809 LGAQSTFKENEESEPCTYEEFYLRKY 834



 Score =  233 bits (593), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 156/443 (35%), Positives = 214/443 (48%), Gaps = 59/443 (13%)

Query: 1050 CHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLS 1109
            CH  N     S ILEA T+L C + FS E LELLGDSVLKYAV+  L+L +   HEG+LS
Sbjct: 842  CHMYN---AFSQILEARTSLRCQDGFSYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELS 898

Query: 1110 ARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLD 1169
             RRS A+CNSTL KL   + L  Y+RD  F P  WV  G    R   C C +D L     
Sbjct: 899  DRRSHAICNSTLRKLAVAQDLPMYVRDEPFYPSCWVGAGMYRQRSRKCCCRLDNLVTKES 958

Query: 1170 GKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1229
             K    D    VGK C  GHRWM SKT +D  EALIGAY VGGG   AL  MK L +D D
Sbjct: 959  SKPRPTDATYYVGKTCGQGHRWMCSKTTSDALEALIGAYAVGGGFDGALEFMKALQVDVD 1018

Query: 1230 LEVSLVDDCITR-ASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE-FYCYQ 1287
             +  L+     R   L +    +  +  +E ++ Y F  K LL EAITHAS  +  +CYQ
Sbjct: 1019 FDSGLIAASQHRPVPLDAVQFHMPALLSLEKELCYTFQNKALLLEAITHASTPDTVFCYQ 1078

Query: 1288 --------------------------------------------------NLYKHLQHCS 1297
                                                               L+ +L+H S
Sbjct: 1079 RLEFIGDAVLDFLVTRHLFTSHPGLSPGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGS 1138

Query: 1298 TLLLSQITEYVKSFPKPGETTD--SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRI 1355
              L ++IT ++    +  E +      ++  PKAL D++ES+ GA+L+D+  + +++W +
Sbjct: 1139 AELRAKITSFLDVLDRDPECSVMFGFKALSGPKALADIVESVAGAILVDSGFDFEKLWVV 1198

Query: 1356 FKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGE 1415
             K +LSP VTP  L   P+RE  ELC    +  +   +  G    AE+ L+  +      
Sbjct: 1199 LKRLLSPFVTPATLSFHPVREFHELCSYKSWEFEWVQSSSGAT--AEILLKAGEQRFTEV 1256

Query: 1416 GQERSRKAAKGKAASQLLKKLEV 1438
               +++K A+   A +LL  L+V
Sbjct: 1257 SSIKNKKDARKDVAEKLLTMLKV 1279



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 43/194 (22%)

Query: 1038 LMLASQLREEINCHSRNFHIPS---------------SLILEALTTLGCCES-FSMERLE 1081
            L+ ASQ R  +   +  FH+P+               +L+LEA+T     ++ F  +RLE
Sbjct: 1023 LIAASQHRP-VPLDAVQFHMPALLSLEKELCYTFQNKALLLEAITHASTPDTVFCYQRLE 1081

Query: 1082 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
             +GD+VL + V+ HLF ++P    G LS  RS +V N  L ++    +L  Y+R  + + 
Sbjct: 1082 FIGDAVLDFLVTRHLFTSHPGLSPGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAEL 1141

Query: 1142 RRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWM-GSKTIADC 1200
            R  +      L   P EC V                          G + + G K +AD 
Sbjct: 1142 RAKITSFLDVLDRDP-ECSV------------------------MFGFKALSGPKALADI 1176

Query: 1201 AEALIGAYYVGGGL 1214
             E++ GA  V  G 
Sbjct: 1177 VESVAGAILVDSGF 1190


>gi|449478272|ref|XP_004155270.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 1-like
            [Cucumis sativus]
          Length = 1987

 Score =  442 bits (1136), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 302/876 (34%), Positives = 448/876 (51%), Gaps = 93/876 (10%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL V E AK++NTIA LETGAGKT+IAV+LIK I   +++   K L +FL P V LV
Sbjct: 329  RQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQTQNKKMLAVFLVPKVPLV 388

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +QQ +VIR  T ++V  Y G  G D WD++ WQ+E     VLVMT QILL+ LR + + +
Sbjct: 389  YQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILRHSIIKM 448

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            + +  +++DECHHA   HPY+ +M EFYH +  + +P VFGMTASPV  KGVS+ +DC  
Sbjct: 449  EAINLLILDECHHAVKKHPYSLVMSEFYHTTPKERRPSVFGMTASPVNLKGVSNQIDCAI 508

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVS---WS 279
            +I  LES LDS V TI+D+ E+E  VP   E    YD++    S  +L  ++EV     +
Sbjct: 509  KIRNLESKLDSTVCTIKDRKELEKHVPMPSEVVVEYDKAATLWSLHELIKQIEVEVEEAA 568

Query: 280  KFDASLSKLQ---GSQLNCYKDMDDKHKTLRKQLSDYHAKIL-------YCLDELGLICA 329
            K  +  SK Q          +++   +    +  SD  A ++       Y L ELG  CA
Sbjct: 569  KLSSRRSKWQLMGARDAGAREELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 628

Query: 330  YEAVK---ICLEKVLKAQEECEIYRQSS--------LQCKYFL--------------EEV 364
            Y+  +     L+   +A  + ++  Q S        LQC+                 E+V
Sbjct: 629  YKVAQSFLTALQNDERANYQLDVKFQESYLNKVVALLQCQLSEGAVSDKDGIASVSEEDV 688

Query: 365  LHVIGSALPLADKIFLDF----GFDY-----SKAVDLGYISTKLHELLQLFLSFGKSTQV 415
             +   +   + +   LD     G ++       AV  G ++ K+  L+++ L +  +   
Sbjct: 689  ANTRSNLDEIEEGELLDSHVVSGGEHVDEIIGAAVADGKVTPKVQSLVKILLKYQYTEDF 748

Query: 416  LCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475
              IIFVER+++A V+ +   ++P L+ +  A L G   S D  T ++Q + +  FR G+V
Sbjct: 749  RAIIFVERVVSALVLPKVFAELPSLSFIKSASLIGHNNSQDMRTCQMQ-DTISKFRDGRV 807

Query: 476  NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRN 535
             LL AT V EEG+ +  C+ V+RFDL KTV +YIQSRGRAR+  S +ILM+ERGNL    
Sbjct: 808  TLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHAA 867

Query: 536  KLFDIIRSERS-----VTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLI 590
             L +   SE +     V  T LS   +   L +        Y VESTGA V+ +S+V L+
Sbjct: 868  FLRNARNSEETLRKEAVERTDLSHLEDTSRLISMDTTPDTVYQVESTGAVVSLNSAVGLV 927

Query: 591  HRYCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKNLSK 645
            H YC  LPSD+Y   +P F     E+      Y C+L LP NAPF+ + GP   +  L++
Sbjct: 928  HFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEDLEGPICSSMRLAQ 987

Query: 646  QLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRA 705
            Q VCL AC+KLH++GA  D LLP      E   + + ++  P  GT + +E +       
Sbjct: 988  QAVCLAACKKLHEMGAFTDMLLPDKGSGEEKEKVEQNDDGDPLPGTARHREFYPEGVANI 1047

Query: 706  LSGRW---GEKC---GVILHAYKFNFACSIV--------TEIYSGFVLLIESELDNDVGN 751
            L G W   G         LH Y +   C  V        T++ S F +L  SELD +V +
Sbjct: 1048 LQGEWILTGRDTFSDSKFLHLYMYTVQCVNVGSSKDLFLTQV-SNFAVLFGSELDAEVLS 1106

Query: 752  FELELYLVSK-TVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREF 810
              ++L++    T KA++   G   +   Q++  K F     + +   L V  +       
Sbjct: 1107 MSMDLFIARTITTKASLVFRGLCDITESQLASLKSFHVRLMSIV---LDVDVEP------ 1157

Query: 811  FLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINW 846
                 T + W P+  YL +P+ + +   D    I+W
Sbjct: 1158 -----TTTPWDPAKAYLFVPV-VGDKSEDPVKEIDW 1187



 Score =  286 bits (732), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 212/648 (32%), Positives = 312/648 (48%), Gaps = 107/648 (16%)

Query: 897  LANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD----DSKTFVNYFS 952
            +A+ S+  ++L   +V A H+G+ + +  I  +++AE+ F          +  ++ +Y+ 
Sbjct: 1284 MADTSMAVEDLVGRIVTAAHSGKRFYVDSIRYDTTAENSFPRKEGYLGPLEYSSYADYYK 1343

Query: 953  EKYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL 1011
            +KYG+ L++  QPL+R +      NLL   F       +       T     +V++PPEL
Sbjct: 1344 QKYGVELVYKHQPLIRGRGVSYCKNLLSPRFEHAENESE------ETLDKTYYVYLPPEL 1397

Query: 1012 LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGC 1071
             +   +P S+V+    LPS+M+R+ES++LA QL+     H  N+ +P+S ILEALT   C
Sbjct: 1398 CLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLK-----HMINYPVPASKILEALTAASC 1452

Query: 1072 CESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQ 1131
             E+F  ER ELLGD+ LK+ VS  LFL YP+KHEGQL+  R   V N  L++    +KLQ
Sbjct: 1453 QETFCYERAELLGDAYLKWVVSRFLFLKYPRKHEGQLTRMRQQMVSNMVLYQYALSKKLQ 1512

Query: 1132 GYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG-KPCDM--- 1187
             YI+   F P RW APG L   PV  E   D      +  FF QD     G    D+   
Sbjct: 1513 SYIQADRFAPSRWAAPGVL---PVYDEDMKDG-----ESSFFDQDKSNSDGVSEMDLHLD 1564

Query: 1188 -----------------GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADL 1230
                              +R + SKT+AD  EALIG YYV GG  AA ++MKW+GI  + 
Sbjct: 1565 VFEDGEVEDREVESDSSSYRVLSSKTLADVVEALIGVYYVEGGKTAANHLMKWIGIKVEF 1624

Query: 1231 EVSLVDDCITRAS-LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQ 1287
            +   V +C TR S L   + R  +   +E  +  +F  + LL EAITHAS       CYQ
Sbjct: 1625 DAGEV-ECGTRQSNLPESILRSVDFDALEGALNIKFQDRGLLVEAITHASRPSCGVSCYQ 1683

Query: 1288 --------------------------------------------------NLYKHLQHCS 1297
                                                              NL+ HL+H S
Sbjct: 1684 RLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHIHLRHGS 1743

Query: 1298 TLLLSQITEYVKSFP----KPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1353
            + L  QI ++VK       KPG  +      KAPK LGD++ESI GA+ +D+  +   VW
Sbjct: 1744 SALEKQIRDFVKEVQDELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVW 1803

Query: 1354 RIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLV 1413
            R+F+P+L P+VTP+ L + P+REL E C      ++   T  G +   E+ +   D + +
Sbjct: 1804 RVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKATRIGNLATVEVFI---DGVQI 1860

Query: 1414 GEGQERSRKAAKGKAASQLLKKLEVCEKRISK-GASNTGKLGDDCRQT 1460
            G  Q   +K A+  AA   L  L+  E   +K    + GK   +  QT
Sbjct: 1861 GIAQNPQKKMAQKLAARNALAVLKEKEMDDAKEKXEDNGKKKKNGNQT 1908


>gi|449432976|ref|XP_004134274.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Cucumis sativus]
          Length = 1986

 Score =  441 bits (1135), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 302/876 (34%), Positives = 448/876 (51%), Gaps = 93/876 (10%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL V E AK++NTIA LETGAGKT+IAV+LIK I   +++   K L +FL P V LV
Sbjct: 328  RQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIYNDLQTQNKKMLAVFLVPKVPLV 387

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +QQ +VIR  T ++V  Y G  G D WD++ WQ+E     VLVMT QILL+ LR + + +
Sbjct: 388  YQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILRHSIIKM 447

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            + +  +++DECHHA   HPY+ +M EFYH +  + +P VFGMTASPV  KGVS+ +DC  
Sbjct: 448  EAINLLILDECHHAVKKHPYSLVMSEFYHTTPKERRPSVFGMTASPVNLKGVSNQIDCAI 507

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVS---WS 279
            +I  LES LDS V TI+D+ E+E  VP   E    YD++    S  +L  ++EV     +
Sbjct: 508  KIRNLESKLDSTVCTIKDRKELEKHVPMPSEVVVEYDKAATLWSLHELIKQIEVEVEEAA 567

Query: 280  KFDASLSKLQ---GSQLNCYKDMDDKHKTLRKQLSDYHAKIL-------YCLDELGLICA 329
            K  +  SK Q          +++   +    +  SD  A ++       Y L ELG  CA
Sbjct: 568  KLSSRRSKWQLMGARDAGAREELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 627

Query: 330  YEAVK---ICLEKVLKAQEECEIYRQSS--------LQCKYFL--------------EEV 364
            Y+  +     L+   +A  + ++  Q S        LQC+                 E+V
Sbjct: 628  YKVAQSFLTALQNDERANYQLDVKFQESYLNKVVALLQCQLSEGAVSDKDGIASVSEEDV 687

Query: 365  LHVIGSALPLADKIFLDF----GFDY-----SKAVDLGYISTKLHELLQLFLSFGKSTQV 415
             +   +   + +   LD     G ++       AV  G ++ K+  L+++ L +  +   
Sbjct: 688  ANTRSNLDEIEEGELLDSHVVSGGEHVDEIIGAAVADGKVTPKVQSLVKILLKYQYTEDF 747

Query: 416  LCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475
              IIFVER+++A V+ +   ++P L+ +  A L G   S D  T ++Q + +  FR G+V
Sbjct: 748  RAIIFVERVVSALVLPKVFAELPSLSFIKSASLIGHNNSQDMRTCQMQ-DTISKFRDGRV 806

Query: 476  NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRN 535
             LL AT V EEG+ +  C+ V+RFDL KTV +YIQSRGRAR+  S +ILM+ERGNL    
Sbjct: 807  TLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHAA 866

Query: 536  KLFDIIRSERS-----VTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLI 590
             L +   SE +     V  T LS   +   L +        Y VESTGA V+ +S+V L+
Sbjct: 867  FLRNARNSEETLRKEAVERTDLSHLEDTSRLISMDTTPDTVYQVESTGAVVSLNSAVGLV 926

Query: 591  HRYCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKNLSK 645
            H YC  LPSD+Y   +P F     E+      Y C+L LP NAPF+ + GP   +  L++
Sbjct: 927  HFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFEDLEGPICSSMRLAQ 986

Query: 646  QLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRA 705
            Q VCL AC+KLH++GA  D LLP      E   + + ++  P  GT + +E +       
Sbjct: 987  QAVCLAACKKLHEMGAFTDMLLPDKGSGEEKEKVEQNDDGDPLPGTARHREFYPEGVANI 1046

Query: 706  LSGRW---GEKC---GVILHAYKFNFACSIV--------TEIYSGFVLLIESELDNDVGN 751
            L G W   G         LH Y +   C  V        T++ S F +L  SELD +V +
Sbjct: 1047 LQGEWILTGRDTFSDSKFLHLYMYTVQCVNVGSSKDLFLTQV-SNFAVLFGSELDAEVLS 1105

Query: 752  FELELYLVSK-TVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREF 810
              ++L++    T KA++   G   +   Q++  K F     + +   L V  +       
Sbjct: 1106 MSMDLFIARTITTKASLVFRGLCDITESQLASLKSFHVRLMSIV---LDVDVEP------ 1156

Query: 811  FLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINW 846
                 T + W P+  YL +P+ + +   D    I+W
Sbjct: 1157 -----TTTPWDPAKAYLFVPV-VGDKSEDPVKEIDW 1186



 Score =  286 bits (731), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 206/624 (33%), Positives = 303/624 (48%), Gaps = 106/624 (16%)

Query: 897  LANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD----DSKTFVNYFS 952
            +A+ S+  ++L   +V A H+G+ + +  I  +++AE+ F          +  ++ +Y+ 
Sbjct: 1283 MADTSMAVEDLVGRIVTAAHSGKRFYVDSIRYDTTAENSFPRKEGYLGPLEYSSYADYYK 1342

Query: 953  EKYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL 1011
            +KYG+ L++  QPL+R +      NLL   F       +       T     +V++PPEL
Sbjct: 1343 QKYGVELVYKHQPLIRGRGVSYCKNLLSPRFEHAENESE------ETLDKTYYVYLPPEL 1396

Query: 1012 LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGC 1071
             +   +P S+V+    LPS+M+R+ES++LA QL+     H  N+ +P+S ILEALT   C
Sbjct: 1397 CLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLK-----HMINYPVPASKILEALTAASC 1451

Query: 1072 CESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQ 1131
             E+F  ER ELLGD+ LK+ VS  LFL YP+KHEGQL+  R   V N  L++    +KLQ
Sbjct: 1452 QETFCYERAELLGDAYLKWVVSRFLFLKYPRKHEGQLTRMRQQMVSNMVLYQYALSKKLQ 1511

Query: 1132 GYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG-KPCDM--- 1187
             YI+   F P RW APG L   PV  E   D      +  FF QD     G    D+   
Sbjct: 1512 SYIQADRFAPSRWAAPGVL---PVYDEDMKDG-----ESSFFDQDKSNSDGVSEMDLHLD 1563

Query: 1188 -----------------GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADL 1230
                              +R + SKT+AD  EALIG YYV GG  AA ++MKW+GI  + 
Sbjct: 1564 VFEDGEVEDREVESDSSSYRVLSSKTLADVVEALIGVYYVEGGKTAANHLMKWIGIKVEF 1623

Query: 1231 EVSLVDDCITRAS-LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQ 1287
            +   V +C TR S L   + R  +   +E  +  +F  + LL EAITHAS       CYQ
Sbjct: 1624 DAGEV-ECGTRQSNLPESILRSVDFDALEGALNIKFQDRGLLVEAITHASRPSCGVSCYQ 1682

Query: 1288 --------------------------------------------------NLYKHLQHCS 1297
                                                              NL+ HL+H S
Sbjct: 1683 RLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHIHLRHGS 1742

Query: 1298 TLLLSQITEYVKSFP----KPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1353
            + L  QI ++VK       KPG  +      KAPK LGD++ESI GA+ +D+  +   VW
Sbjct: 1743 SALEKQIRDFVKEVQDELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVW 1802

Query: 1354 RIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLV 1413
            R+F+P+L P+VTP+ L + P+REL E C      ++   T  G +   E+ +   D + +
Sbjct: 1803 RVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKATRIGNLATVEVFI---DGVQI 1859

Query: 1414 GEGQERSRKAAKGKAASQLLKKLE 1437
            G  Q   +K A+  AA   L  L+
Sbjct: 1860 GIAQNPQKKMAQKLAARNALAVLK 1883


>gi|15223286|ref|NP_171612.1| endoribonuclease Dicer [Arabidopsis thaliana]
 gi|34922211|sp|Q9SP32.2|DCL1_ARATH RecName: Full=Endoribonuclease Dicer homolog 1; AltName:
            Full=Dicer-like protein 1; Short=AtDCL1; AltName:
            Full=Protein ABNORMAL SUSPENSOR 1; AltName: Full=Protein
            CARPEL FACTORY; AltName: Full=Protein SHORT INTEGUMENTS
            1; AltName: Full=Protein SUSPENSOR 1
 gi|11559645|gb|AAG38019.1|AF292940_1 short integuments 1 [Arabidopsis thaliana]
 gi|11559647|gb|AAG38020.1|AF292941_1 short integuments 1 [Arabidopsis thaliana]
 gi|332189099|gb|AEE27220.1| endoribonuclease Dicer [Arabidopsis thaliana]
          Length = 1909

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 297/874 (33%), Positives = 443/874 (50%), Gaps = 93/874 (10%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL V E AK +NTIA LETGAGKT+IA++LIK + + + S   K L +FL P V LV
Sbjct: 250  RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +QQ +VIR  T F+V  Y G  G D WDS+ WQ+E     VLVMT QILL+ LR + + +
Sbjct: 310  YQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHSIIRM 369

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            + +  +++DECHHA   HPY+ +M EFYH +  D +P +FGMTASPV  KGVSS +DC  
Sbjct: 370  ETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAI 429

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
            +I  LE+ LDS V TI+D+ E+E  VP   E    YD++    S  +   ++  +  +A+
Sbjct: 430  KIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAA 489

Query: 285  LSKLQGSQLNCYKDMDDKHKTLRKQL--------SDYHAKIL-------YCLDELGLICA 329
             +  + S+       D   K   +Q+        SD  A ++       Y L ELG  CA
Sbjct: 490  QASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCA 549

Query: 330  YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL----------------- 372
            Y+  +  L   L++ E          Q  Y L EV+ ++   L                 
Sbjct: 550  YKVGQSFL-SALQSDERVNFQVDVKFQESY-LSEVVSLLQCELLEGAAAEKVAAEVGKPE 607

Query: 373  -----------PLADKIFLDFGFDYSK----AVDLGYISTKLHELLQLFLSFGKSTQVLC 417
                        L D   +  G    +    AV  G ++ K+  L++L L +  +     
Sbjct: 608  NGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTADFRA 667

Query: 418  IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
            I+FVER++AA V+ +   ++P L+ +  A + G   S +  + ++Q + +  FR G V L
Sbjct: 668  IVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNSQEMKSSQMQ-DTISKFRDGHVTL 726

Query: 478  LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
            L AT V EEG+ +  C+ V+RFDL KTV +YIQSRGRAR+  S +ILM+ERGN+     L
Sbjct: 727  LVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNVSHAAFL 786

Query: 538  FDIIRSERSVTDTALSRD-----PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 592
             +   SE ++   A+ R       +   L +   V    Y VE+TGA V+ +S+V L+H 
Sbjct: 787  RNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAVGLVHF 846

Query: 593  YCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKNLSKQL 647
            YC  LP D+Y   +P F  +  E+      Y C L LP NAPF+ + GP   +  L++Q 
Sbjct: 847  YCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQA 906

Query: 648  VCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALS 707
            VCL AC+KLH++GA  D LLP      +     + +E  P  GT + +E +       L 
Sbjct: 907  VCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGVADVLK 966

Query: 708  GRW----GEKC--GVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDNDVGNFE 753
            G W     E C    + H Y +N  C          ++E+ S F +L  +ELD +V +  
Sbjct: 967  GEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEV-SEFAILFGNELDAEVLSMS 1025

Query: 754  LELYLVSKTV-KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFL 812
            ++LY+    + KA+++  G + +  +Q+S  K F     + +   L V  + S       
Sbjct: 1026 MDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIV---LDVDVEPS------- 1075

Query: 813  KRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINW 846
                 + W P+  YL +P+   NT  +    INW
Sbjct: 1076 ----TTPWDPAKAYLFVPV-TDNTSMEPIKGINW 1104



 Score =  279 bits (714), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 236/787 (29%), Positives = 350/787 (44%), Gaps = 159/787 (20%)

Query: 892  KDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD----DSKTF 947
            K  + +A+G + A++L   +V A H+G+ + +  I  + SAE+ F          +  T+
Sbjct: 1196 KGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTY 1255

Query: 948  VNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQMHVH 1006
             +Y+ +KYG+ L    QPL++ +      NLL   F   G S               +V 
Sbjct: 1256 ADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGES-------ETVLDKTYYVF 1308

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            +PPEL V   +  S+++    LPS+M+R+ES++LA QL+  I+     + IP+S ILEAL
Sbjct: 1309 LPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLIS-----YPIPTSKILEAL 1363

Query: 1067 TTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
            T   C E+F  ER ELLGD+ LK+ VS  LFL YP+KHEGQL+  R   V N  L++   
Sbjct: 1364 TAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFAL 1423

Query: 1127 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDG--KFFTQDTKVVVGKP 1184
             + LQ YI+   F P RW APG      VP     DT     DG   FF ++ K V  + 
Sbjct: 1424 VKGLQSYIQADRFAPSRWSAPG------VPPVFDEDT----KDGGSSFFDEEQKPVSEEN 1473

Query: 1185 CDM----------------GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDA 1228
             D+                 +R + SKT+AD  EALIG YYV GG IAA ++MKW+GI  
Sbjct: 1474 SDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHV 1533

Query: 1229 DLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS--VQEFYCY 1286
            + +   VD  +   ++   V +  +   +E  + YEF  K LL EAITHAS       CY
Sbjct: 1534 EDDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCY 1593

Query: 1287 QN--------------------------------------------------LYKHLQHC 1296
            Q                                                   L+ +L+H 
Sbjct: 1594 QRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHG 1653

Query: 1297 STLLLSQITEYVKSF----PKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEV 1352
            S+ L  QI E+VK       KPG  +      KAPK LGD++ESI GA+ +D+  +    
Sbjct: 1654 SSALEKQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAA 1713

Query: 1353 WRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLL 1412
            W++F+P+L P+VTP+ L + P+REL E C      ++   +  G     E+ +   D + 
Sbjct: 1714 WKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFI---DGVQ 1770

Query: 1413 VGEGQERSRKAAK---GKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPP 1469
            VG  Q   +K A+    + A   LK+ E+ E +  +   N G  G        ED  E  
Sbjct: 1771 VGVAQNPQKKMAQKLAARNALAALKEKEIAESK--EKHINNGNAG--------EDQGENE 1820

Query: 1470 SCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFE 1529
            +  ++ G +                       P        R +L  +C    WPMP++ 
Sbjct: 1821 NGNKKNGHQ-----------------------PFT------RQTLNDICLRKNWPMPSYR 1851

Query: 1530 -TTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALI 1588
               E        F  G+   T    +              EC G+P    K + DSAA++
Sbjct: 1852 CVKEGGPAHAKRFTFGVRVNTSDRGWTD------------ECIGEPMPSVKKAKDSAAVL 1899

Query: 1589 MLHELER 1595
            +L  L +
Sbjct: 1900 LLELLNK 1906


>gi|449505410|ref|XP_004162460.1| PREDICTED: LOW QUALITY PROTEIN: dicer-like protein 4-like [Cucumis
            sativus]
          Length = 1228

 Score =  438 bits (1126), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 327/1028 (31%), Positives = 492/1028 (47%), Gaps = 114/1028 (11%)

Query: 473  GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK 532
            G +NLL AT V EEG+ +  C  VIRFDLP+TVSS+IQSRGRAR   S++  +++ GN K
Sbjct: 49   GALNLLIATKVGEEGLDIQTCCLVIRFDLPETVSSFIQSRGRARMPQSEYAFLVDSGNEK 108

Query: 533  QRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 592
            +   + +  + E  +     SR     F      +    Y V STGAS+T+  S++L+H 
Sbjct: 109  ELGLINEFRKDENRMNREIYSRSSNETFDSHEESI----YRVASTGASITSGRSISLLHE 164

Query: 593  YCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEA 652
            YC  LP D Y+ PKP F Y        C + LPSNAP   IV  +  +K+ +K+  CL+A
Sbjct: 165  YCSKLPHDDYFDPKPQFSYYDDLGGTVCHVNLPSNAPIPQIVSRSQSSKDAAKKDACLKA 224

Query: 653  CEKLHQVGALNDHLLPSVEEPSENNLISKKN--ESLPGAGTTKRKELHGTTPIRALSGRW 710
             E+LH++GAL+D+LLP     S N   S  N  +S      T R+ELH      AL   W
Sbjct: 225  VEELHKLGALSDYLLPMRGRGSANEQESGLNSSDSDSSEDETSRRELHEMIFPAALKESW 284

Query: 711  GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV-SKTVKATVSS 769
                 ++L+ Y            Y  F L +++ L  +     LEL+L   ++V   +  
Sbjct: 285  TGSGYLVLYCYHIKCTPDPRDRNYKEFGLFVKAPLPQEAERMGLELHLARGRSVMVNLIP 344

Query: 770  SGQVHLDADQMSKAKCFQELFFNGLFGKL-FVKSKSSGSREFFLKRETNSLWSPSYMYLL 828
            SG V L  +++++A+ FQE+F   +  +L FV+         ++    N+  S S  YLL
Sbjct: 345  SGVVELLEEEITQAESFQEMFLKVILDRLEFVQE--------YIPLRNNASRSVSSSYLL 396

Query: 829  LPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTG 888
            LP+   +   +GS  I+W+ I  C S       K F   A     G  SS          
Sbjct: 397  LPMIFHDN--EGSLFIDWNVIRRCLS------SKIFQNDACLIVKGTASSDTH------- 441

Query: 889  CHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFV 948
                  + L +G   + ++++ +V   + G    +  I      E   +G++   +  F 
Sbjct: 442  ------LMLYDGHRRSSDIENSLVYVPYKGEFXFVTNI------ERGKNGHSQYKNSGFS 489

Query: 949  NYFSE---KYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHV 1005
            ++F     K+GI L +P QPLLR K     HN L N        +  +        +  +
Sbjct: 490  SHFEHLKTKFGIHLNYPEQPLLRAKPLFLLHNWLHN--------RKREDSEARHLEEYFI 541

Query: 1006 HMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI-NCHSRNFHIPSSLI 1062
             +PPE+  L  +     +  S+ LLPS+M RLE+L++A +L+  +         + ++ I
Sbjct: 542  ELPPEVCQLKIIGFSKDIGSSISLLPSIMHRLENLLVAIELKCRLAAAFPAGAEVTANRI 601

Query: 1063 LEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
            LEALTT  C E  S+ERLE+LGDS LK+AV+ +LFLT+ K  EG+L+ RRS+ V N  L 
Sbjct: 602  LEALTTEKCQERISLERLEILGDSFLKFAVARYLFLTHDKFDEGELTRRRSYLVKNFNLL 661

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
            KL T + LQ YIRD  F+P ++   G    RP P  C  +T +        T + K    
Sbjct: 662  KLATRKNLQVYIRDQPFEPSQFYLLG----RPCPRICNEETSKDIHSHDDATNNAKANET 717

Query: 1183 KPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRA 1242
            K C  GH W+  KTI+D  EAL+GA+ V  G  AA+  +KW+GI  + E SLV D +  +
Sbjct: 718  K-CSKGHHWLQKKTISDVVEALVGAFLVDSGFKAAIAFLKWIGIQVEFEASLVTDALMAS 776

Query: 1243 SLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF--YCYQNL----------- 1289
            +    +    +I  +++ +G+ F  K LL +A+ H S  +    CYQ L           
Sbjct: 777  NAYVLLADSIDISALQNSLGHRFLHKGLLLQALVHPSYHKHGGGCYQRLEFLGDAVLDYL 836

Query: 1290 ---------------------------------------YKHLQHCSTLLLSQITEYVKS 1310
                                                   YK L   ST LLS I  YV  
Sbjct: 837  ITSYLYSAYPKLKPGQLTDLRSVFVRNEAFANVAVDRFFYKFLLCDSTSLLSDIKSYVHF 896

Query: 1311 FPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLE 1370
               P    DS    + PKALGDL+ES VGAVL+DT  +++ VW+I    + PI++    +
Sbjct: 897  IKAPPFERDSLEQPRCPKALGDLVESSVGAVLVDTGFDMNCVWKIMLSFIDPIMSFSGFQ 956

Query: 1371 LPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAAS 1430
            L P+R++ E C + G+ +K N +        +  ++  +         R +K A   AA+
Sbjct: 957  LSPIRDITEFCQNCGWKLKFNSSKMEGYYSVKAEVKGGNFHATASAANRRKKDAAKIAAN 1016

Query: 1431 QLLKKLEV 1438
             +L KL+ 
Sbjct: 1017 LILTKLKA 1024


>gi|6102610|gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana]
          Length = 1909

 Score =  438 bits (1126), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 297/874 (33%), Positives = 442/874 (50%), Gaps = 93/874 (10%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL V E AK +NTIA LETGAGKT+IA++LIK + + + S   K L +FL P V LV
Sbjct: 250  RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +QQ +VIR  T F+V  Y G  G D WDS+ WQ+E     VLVMT QILL+ LR + + +
Sbjct: 310  YQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHSIIRM 369

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            + +  +++DECHHA   HPY+ +M EFYH +  D +P +FGMTASPV  KGVSS +DC  
Sbjct: 370  ETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAI 429

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
            +I  LE+ LDS V TI+D+ E+E  VP   E    YD++    S  +   ++  +  +A+
Sbjct: 430  KIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAA 489

Query: 285  LSKLQGSQLNCYKDMDDKHKTLRKQL--------SDYHAKIL-------YCLDELGLICA 329
             +  + S+       D   K   +Q+        SD  A ++       Y L ELG  CA
Sbjct: 490  QASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCA 549

Query: 330  YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL----------------- 372
            Y+  +  L   L++ E          Q  Y L EV+ ++   L                 
Sbjct: 550  YKVGQSFL-SALQSDERVNFQVDVKFQESY-LSEVVSLLQCELLEGAAAEKVAAEVGKPE 607

Query: 373  -----------PLADKIFLDFGFDYSK----AVDLGYISTKLHELLQLFLSFGKSTQVLC 417
                        L D   +  G    +    AV  G ++ K+  L++L L +  +     
Sbjct: 608  NGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTADFRA 667

Query: 418  IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
            I+FVER++AA V+ +   ++P L+ +  A + G   S +  + ++Q + +  FR G V L
Sbjct: 668  IVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNSQEMKSSQMQ-DTISKFRDGHVTL 726

Query: 478  LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
            L AT V EEG+ +  C+ V+RFDL KTV +YIQSRGRAR+  S +ILM+ERGN+     L
Sbjct: 727  LVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNVSHAAFL 786

Query: 538  FDIIRSERSVTDTALSRD-----PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 592
             +   SE ++   A+ R       +   L +   V    Y VE+TGA V+ +S+V L+H 
Sbjct: 787  RNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAVGLVHF 846

Query: 593  YCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKNLSKQL 647
            YC  LP D+Y   +P F  +  E+      Y C L LP NAPF+ + GP   +  L++Q 
Sbjct: 847  YCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQA 906

Query: 648  VCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALS 707
            VCL AC+KLH++GA  D LLP      +     + +E  P  GT + +E +       L 
Sbjct: 907  VCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGVADVLK 966

Query: 708  GRW----GEKC--GVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDNDVGNFE 753
            G W     E C    + H Y  N  C          ++E+ S F +L  +ELD +V +  
Sbjct: 967  GEWVSSGKEVCESSKLFHLYMHNVRCVDFGSSKDPFLSEV-SEFAILFGNELDAEVLSMS 1025

Query: 754  LELYLVSKTV-KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFL 812
            ++LY+    + KA+++  G + +  +Q+S  K F     + +   L V  + S       
Sbjct: 1026 MDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIV---LDVDVEPS------- 1075

Query: 813  KRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINW 846
                 + W P+  YL +P+   NT  +    INW
Sbjct: 1076 ----TTPWDPAKAYLFVPV-TDNTSMEPIKGINW 1104



 Score =  280 bits (715), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 236/787 (29%), Positives = 350/787 (44%), Gaps = 159/787 (20%)

Query: 892  KDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD----DSKTF 947
            K  + +A+G + A++L   +V A H+G+ + +  I  + SAE+ F          +  T+
Sbjct: 1196 KGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTY 1255

Query: 948  VNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQMHVH 1006
             +Y+ +KYG+ L    QPL++ +      NLL   F   G S               +V 
Sbjct: 1256 ADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGES-------ETVLDKTYYVF 1308

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            +PPEL V   +  S+++    LPS+M+R+ES++LA QL+  I+     + IP+S ILEAL
Sbjct: 1309 LPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLIS-----YPIPTSKILEAL 1363

Query: 1067 TTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
            T   C E+F  ER ELLGD+ LK+ VS  LFL YP+KHEGQL+  R   V N  L++   
Sbjct: 1364 TAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFAL 1423

Query: 1127 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDG--KFFTQDTKVVVGKP 1184
             + LQ YI+   F P RW APG      VP     DT     DG   FF ++ K V  + 
Sbjct: 1424 VKGLQSYIQADRFAPSRWSAPG------VPPVFDEDT----KDGGSSFFDEEQKPVSEEN 1473

Query: 1185 CDM----------------GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDA 1228
             D+                 +R + SKT+AD  EALIG YYV GG IAA ++MKW+GI  
Sbjct: 1474 SDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHV 1533

Query: 1229 DLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS--VQEFYCY 1286
            + +   VD  +   ++   V +  +   +E  + YEF  K LL EAITHAS       CY
Sbjct: 1534 EDDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCY 1593

Query: 1287 QN--------------------------------------------------LYKHLQHC 1296
            Q                                                   L+ +L+H 
Sbjct: 1594 QRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHG 1653

Query: 1297 STLLLSQITEYVKSF----PKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEV 1352
            S+ L  QI E+VK       KPG  +      KAPK LGD++ESI GA+ +D+  +    
Sbjct: 1654 SSALEKQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAA 1713

Query: 1353 WRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLL 1412
            W++F+P+L P+VTP+ L + P+REL E C      ++   +  G     E+ +   D + 
Sbjct: 1714 WKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFI---DGVQ 1770

Query: 1413 VGEGQERSRKAAK---GKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPP 1469
            VG  Q   +K A+    + A   LK+ E+ E +  +   N G  G        ED  E  
Sbjct: 1771 VGVAQNPQKKMAQKLAARNALAALKEKEIAESK--EKHINNGNAG--------EDQGENE 1820

Query: 1470 SCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFE 1529
            +  ++ G +                       P        R +L  +C    WPMP++ 
Sbjct: 1821 NGNKKNGHQ-----------------------PFT------RQTLNDICLRKNWPMPSYR 1851

Query: 1530 -TTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALI 1588
               E        F  G+   T    +              EC G+P    K + DSAA++
Sbjct: 1852 CVKEGGPAHAKRFTFGVRVNTSDRGWTD------------ECIGEPMPSVKKAKDSAAVL 1899

Query: 1589 MLHELER 1595
            +L  L +
Sbjct: 1900 LLELLNK 1906


>gi|297848414|ref|XP_002892088.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297337930|gb|EFH68347.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1962

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 296/874 (33%), Positives = 444/874 (50%), Gaps = 93/874 (10%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL V E AK +NTIA LETGAGKT+IA++LIK + + + S   K L +FL P V LV
Sbjct: 243  RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSKNRKLLSVFLVPKVPLV 302

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +QQ +VIR  T F+V  Y G  G D WD++ WQ+E     VLVMT QILL+ LR + + +
Sbjct: 303  YQQAEVIRNQTCFQVGHYCGEMGQDFWDARRWQREFESKQVLVMTAQILLNILRHSIIRM 362

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            + +  +++DECHHA   HPY+ +M EFYH +  D +P +FGMTASPV  KGVSS +DC  
Sbjct: 363  ETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAI 422

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
            +I  LE+ LDS V TI+D+ E+E  VP   E    YD++    S  +   ++  +  +A+
Sbjct: 423  KIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIVAVEEAA 482

Query: 285  LSKLQGSQLNCYKDMDDKHKTLRKQL--------SDYHAKIL-------YCLDELGLICA 329
             +  + S+       D   K   +Q+        SD  A ++       Y L ELG  CA
Sbjct: 483  QASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCA 542

Query: 330  YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL----------------- 372
            Y+  +  L   L++ E          Q  Y L EV+ ++   L                 
Sbjct: 543  YKVGQSFL-TALQSDERVNFQVDVKFQESY-LSEVVSLLQCELLEGAAAEKVAAEVSKTE 600

Query: 373  -----------PLADKIFLDFGFDYSK----AVDLGYISTKLHELLQLFLSFGKSTQVLC 417
                        L D   +  G    +    AV  G ++ K+  L++L L +  ++    
Sbjct: 601  NGNANDEMEEGELPDDHVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTSDFRA 660

Query: 418  IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
            I+FVER++AA V+ +   ++P L  +  A + G   S +  + ++Q + +  FR G V L
Sbjct: 661  IVFVERVVAALVLPKVFAELPSLGFIRCASMIGHNNSQEMKSSQMQ-DTISKFRDGHVTL 719

Query: 478  LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
            L AT V EEG+ +  C+ V+RFDL KTV +YIQSRGRAR+  S +ILM+ERGN+     L
Sbjct: 720  LVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNVSHAAFL 779

Query: 538  FDIIRSERSVTDTALSRD-----PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 592
             +   SE ++   A+ R       +   L +   V    Y VE+TGA V+ +S+V L+H 
Sbjct: 780  RNARNSEETLRKEAIERTDLSHLKDTSRLISIDTVPGTIYKVEATGAMVSLNSAVGLVHF 839

Query: 593  YCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKNLSKQL 647
            YC  LP D+Y   +P F  +  E+      Y C L LP NAPF+ + GP   +  L++Q 
Sbjct: 840  YCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQA 899

Query: 648  VCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALS 707
            VCL AC+KLH++GA  D LLP      +   + + +E  P  GT + +E +       L 
Sbjct: 900  VCLAACKKLHEMGAFTDMLLPDKGSGQDAEKVDQDDEGEPVPGTARHREFYPEGVADVLK 959

Query: 708  GRW----GEKC--GVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDNDVGNFE 753
            G W     E C    + H Y ++  C          +TE+ S F +L  +ELD +V +  
Sbjct: 960  GEWILSGKEICESSKLFHLYMYSVRCVDLGSSKDPFLTEV-SEFAILFGNELDAEVLSMS 1018

Query: 754  LELYLVSKTV-KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFL 812
            ++LY+    + KA+++  G + +  +Q+S  K F     + +   L V  + S       
Sbjct: 1019 MDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIV---LDVDVEPS------- 1068

Query: 813  KRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINW 846
                 + W P+  YL +P+   NT  +    INW
Sbjct: 1069 ----TTPWDPAKAYLFVPVSD-NTSIEPIKGINW 1097



 Score =  251 bits (640), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 213/722 (29%), Positives = 316/722 (43%), Gaps = 157/722 (21%)

Query: 954  KYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTK--KPQMHVHMPPEL 1011
            +YG+ L    QPL++ +      NLL        S +  +SG +        +V +PPEL
Sbjct: 1315 RYGVDLNCKQQPLIKGRGVSYCKNLL--------SPRFEQSGESETILDKTYYVFLPPEL 1366

Query: 1012 LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGC 1071
             V   +  S+V+    LPS+M+R+ES++LA QL+  I+     + IP+S ILEALT   C
Sbjct: 1367 CVVHPLSGSLVRGAQRLPSIMRRVESMLLAVQLKNLIS-----YPIPTSKILEALTAASC 1421

Query: 1072 CESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQ 1131
             E+F  ER ELLGD+ LK+ VS +LFL YP+KHEGQL+  R   V N  L++    + LQ
Sbjct: 1422 QETFCYERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQ 1481

Query: 1132 GYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDG--KFFTQDTKVVVGKPCDM-- 1187
             YI+   F P RW APG      VP     DT     DG   FF ++ K V  +  D+  
Sbjct: 1482 SYIQADRFAPSRWSAPG------VPPVFDEDT----KDGGSSFFDEEQKPVSEENSDVFE 1531

Query: 1188 --------------GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVS 1233
                           +R + SKT+AD  EALIG YYV GG +AA ++MKW+GI  + +  
Sbjct: 1532 DGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKVAANHLMKWIGIHVEDDPD 1591

Query: 1234 LVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS--VQEFYCYQN--- 1288
             V+  +   ++   V +  +   +E  + +EF  K LL EAITHAS       CYQ    
Sbjct: 1592 EVEGTVKNVNVPESVLKSIDFVGLERALKFEFKEKGLLVEAITHASRPSSGVSCYQRLEF 1651

Query: 1289 -----------------------------------------------LYKHLQHCSTLLL 1301
                                                           L+ +L+H S+ L 
Sbjct: 1652 VGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALE 1711

Query: 1302 SQITEYVKSF----PKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFK 1357
             QI E+VK       KPG  +      KAPK LGD++ESI GA+ +D+  +    W++F+
Sbjct: 1712 KQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQ 1771

Query: 1358 PILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ 1417
            P+L P+VTP+ L + P+REL E C      ++   +  G     E+ +   D + VG  Q
Sbjct: 1772 PLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFI---DGVQVGVAQ 1828

Query: 1418 ERSRKAAK---GKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQ 1474
               +K A+    + A   LK+ E+ E +  +   N  +  DD                  
Sbjct: 1829 NPQKKMAQKLAARNALAALKEKEIAESKEKRVNGNAVENQDD------------------ 1870

Query: 1475 KGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFE-TTES 1533
               E       +  + +                   R +L  +C    WPMP++    E 
Sbjct: 1871 ---ENGNANKKNGNQTFT------------------RQTLNDICLRKNWPMPSYRCVKEG 1909

Query: 1534 KSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHEL 1593
                   F  G+   T    +              EC G+P    K + DSAA+++L  L
Sbjct: 1910 GPAHAKRFTFGVRVNTSDRGWTD------------ECIGEPMPSVKKAKDSAAVLLLQLL 1957

Query: 1594 ER 1595
             +
Sbjct: 1958 NK 1959


>gi|334182203|ref|NP_001184881.1| endoribonuclease Dicer [Arabidopsis thaliana]
 gi|332189100|gb|AEE27221.1| endoribonuclease Dicer [Arabidopsis thaliana]
          Length = 1910

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 297/875 (33%), Positives = 443/875 (50%), Gaps = 94/875 (10%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL V E AK +NTIA LETGAGKT+IA++LIK + + + S   K L +FL P V LV
Sbjct: 250  RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +QQ +VIR  T F+V  Y G  G D WDS+ WQ+E     VLVMT QILL+ LR + + +
Sbjct: 310  YQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHSIIRM 369

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            + +  +++DECHHA   HPY+ +M EFYH +  D +P +FGMTASPV  KGVSS +DC  
Sbjct: 370  ETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAI 429

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
            +I  LE+ LDS V TI+D+ E+E  VP   E    YD++    S  +   ++  +  +A+
Sbjct: 430  KIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAA 489

Query: 285  LSKLQGSQLNCYKDMDDKHKTLRKQL--------SDYHAKIL-------YCLDELGLICA 329
             +  + S+       D   K   +Q+        SD  A ++       Y L ELG  CA
Sbjct: 490  QASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCA 549

Query: 330  YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL----------------- 372
            Y+  +  L   L++ E          Q  Y L EV+ ++   L                 
Sbjct: 550  YKVGQSFL-SALQSDERVNFQVDVKFQESY-LSEVVSLLQCELLEGAAAEKVAAEVGKPE 607

Query: 373  -----------PLADKIFLDFGFDYSK----AVDLGYISTKLHELLQLFLSFGKSTQVLC 417
                        L D   +  G    +    AV  G ++ K+  L++L L +  +     
Sbjct: 608  NGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTADFRA 667

Query: 418  IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
            I+FVER++AA V+ +   ++P L+ +  A + G   S +  + ++Q + +  FR G V L
Sbjct: 668  IVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNSQEMKSSQMQ-DTISKFRDGHVTL 726

Query: 478  LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
            L AT V EEG+ +  C+ V+RFDL KTV +YIQSRGRAR+  S +ILM+ERGN+     L
Sbjct: 727  LVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNVSHAAFL 786

Query: 538  FDIIRSERSVTDTALSRD-----PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 592
             +   SE ++   A+ R       +   L +   V    Y VE+TGA V+ +S+V L+H 
Sbjct: 787  RNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAVGLVHF 846

Query: 593  YCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKNLSKQL 647
            YC  LP D+Y   +P F  +  E+      Y C L LP NAPF+ + GP   +  L++Q 
Sbjct: 847  YCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQA 906

Query: 648  VCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALS 707
            VCL AC+KLH++GA  D LLP      +     + +E  P  GT + +E +       L 
Sbjct: 907  VCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGVADVLK 966

Query: 708  GRW----GEKC--GVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDNDVG-NF 752
            G W     E C    + H Y +N  C          ++E+ S F +L  +ELD +V  + 
Sbjct: 967  GEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEV-SEFAILFGNELDAEVVLSM 1025

Query: 753  ELELYLVSKTV-KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFF 811
             ++LY+    + KA+++  G + +  +Q+S  K F     + +   L V  + S      
Sbjct: 1026 SMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIV---LDVDVEPS------ 1076

Query: 812  LKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINW 846
                  + W P+  YL +P+   NT  +    INW
Sbjct: 1077 -----TTPWDPAKAYLFVPV-TDNTSMEPIKGINW 1105



 Score =  280 bits (715), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 236/787 (29%), Positives = 350/787 (44%), Gaps = 159/787 (20%)

Query: 892  KDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD----DSKTF 947
            K  + +A+G + A++L   +V A H+G+ + +  I  + SAE+ F          +  T+
Sbjct: 1197 KGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTY 1256

Query: 948  VNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQMHVH 1006
             +Y+ +KYG+ L    QPL++ +      NLL   F   G S               +V 
Sbjct: 1257 ADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGES-------ETVLDKTYYVF 1309

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            +PPEL V   +  S+++    LPS+M+R+ES++LA QL+  I+     + IP+S ILEAL
Sbjct: 1310 LPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLIS-----YPIPTSKILEAL 1364

Query: 1067 TTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
            T   C E+F  ER ELLGD+ LK+ VS  LFL YP+KHEGQL+  R   V N  L++   
Sbjct: 1365 TAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFAL 1424

Query: 1127 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDG--KFFTQDTKVVVGKP 1184
             + LQ YI+   F P RW APG      VP     DT     DG   FF ++ K V  + 
Sbjct: 1425 VKGLQSYIQADRFAPSRWSAPG------VPPVFDEDT----KDGGSSFFDEEQKPVSEEN 1474

Query: 1185 CDM----------------GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDA 1228
             D+                 +R + SKT+AD  EALIG YYV GG IAA ++MKW+GI  
Sbjct: 1475 SDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHV 1534

Query: 1229 DLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS--VQEFYCY 1286
            + +   VD  +   ++   V +  +   +E  + YEF  K LL EAITHAS       CY
Sbjct: 1535 EDDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCY 1594

Query: 1287 QN--------------------------------------------------LYKHLQHC 1296
            Q                                                   L+ +L+H 
Sbjct: 1595 QRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHG 1654

Query: 1297 STLLLSQITEYVKSF----PKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEV 1352
            S+ L  QI E+VK       KPG  +      KAPK LGD++ESI GA+ +D+  +    
Sbjct: 1655 SSALEKQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAA 1714

Query: 1353 WRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLL 1412
            W++F+P+L P+VTP+ L + P+REL E C      ++   +  G     E+ +   D + 
Sbjct: 1715 WKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFI---DGVQ 1771

Query: 1413 VGEGQERSRKAAK---GKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPP 1469
            VG  Q   +K A+    + A   LK+ E+ E +  +   N G  G        ED  E  
Sbjct: 1772 VGVAQNPQKKMAQKLAARNALAALKEKEIAESK--EKHINNGNAG--------EDQGENE 1821

Query: 1470 SCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFE 1529
            +  ++ G +                       P        R +L  +C    WPMP++ 
Sbjct: 1822 NGNKKNGHQ-----------------------PFT------RQTLNDICLRKNWPMPSYR 1852

Query: 1530 -TTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALI 1588
               E        F  G+   T    +              EC G+P    K + DSAA++
Sbjct: 1853 CVKEGGPAHAKRFTFGVRVNTSDRGWTD------------ECIGEPMPSVKKAKDSAAVL 1900

Query: 1589 MLHELER 1595
            +L  L +
Sbjct: 1901 LLELLNK 1907


>gi|357512663|ref|XP_003626620.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
 gi|355501635|gb|AES82838.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
          Length = 1965

 Score =  427 bits (1099), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 284/820 (34%), Positives = 418/820 (50%), Gaps = 102/820 (12%)

Query: 21  PDMGSSGHDHAVDGPSSSTNSINFIP------RIYQLKVFEVAKRRNTIAVLETGAGKTM 74
           P++ +S H   +D P         +P      R YQL V E AK RNTIA LETGAGKT+
Sbjct: 189 PNLHTSQHKMDIDNPIKQEKPKETVPVPEEKARQYQLDVLEQAKTRNTIAFLETGAGKTL 248

Query: 75  IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWD 134
           IAV+LIK I + +     K L +FL P V LV+QQ +VIR  T ++V  Y G  G D WD
Sbjct: 249 IAVLLIKSIHETLHLQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWD 308

Query: 135 SQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194
           ++ WQ+E +   VLVMT QILL+ LR + + ++ +  +++DECHHA   HPY+ +M EFY
Sbjct: 309 ARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFY 368

Query: 195 HKS--DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPS 252
           H +  + +P VFGMTASPV  KGVSS +DC  +I  LES LDS V TI+D+ E+E  VP 
Sbjct: 369 HTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPM 428

Query: 253 AKESCRFYDQSK---FCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLR-- 307
             E    YD++    +    +K ++E    +   S S+    Q    +D   K +  +  
Sbjct: 429 PSEIVVKYDKAASLCYLHEQIK-QMETEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVY 487

Query: 308 ----KQLSDYHAKIL-------YCLDELGLICAYEAVK---ICLEKVLKAQEECEIYRQS 353
               +  SD  A ++       Y L ELG  CAY+  +     L+   +A  + ++  Q 
Sbjct: 488 GVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQE 547

Query: 354 SLQCKYFLEEVLHVIGSAL---PLADKIFLDFGFDYSK---------------------- 388
           S     +L +V+ ++   L    ++DK   + G D S+                      
Sbjct: 548 S-----YLSKVVSLLKCQLSEGAISDK---NDGVDDSQNGAAHSGSDEHEEIEEGELPDS 599

Query: 389 ---------------AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERF 433
                          AV  G ++ K+  L+++ L +  +     IIFVER+++A V+ + 
Sbjct: 600 HVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTDDFRAIIFVERVVSALVLPKV 659

Query: 434 VKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
             ++P L+ +  A L G   S +  T ++  + +  FR G+V LL AT V EEG+ +  C
Sbjct: 660 FAELPSLSFVKCASLIGHNNSQEMRTHQMH-DTIAKFRDGRVTLLVATSVAEEGLDIRQC 718

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALS 553
           + VIRFDL KTV +YIQSRGRAR+  S +ILM+ERGNL     L +   SE ++   A+ 
Sbjct: 719 NVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLKNARNSEETLRREAIE 778

Query: 554 RDPEACFLKACTYVKTKS-----YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPI 608
           R   +    +   +   +     Y V+STGA V+ +S+V L+H YC  LPSD+Y   +P 
Sbjct: 779 RTDLSHLKDSSRLISVDTHPETMYQVKSTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPE 838

Query: 609 FKYKSAEEA-----YECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALN 663
           F  +  E +     Y C L LP NAPF+ + GP   +  L++Q VCL AC KLH++GA  
Sbjct: 839 FIMEKHENSGGPTEYSCRLQLPCNAPFENLEGPICSSIRLAQQAVCLAACRKLHEMGAFT 898

Query: 664 DHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRW----GEKCG--VI 717
           D LLP      E     + +E     GT + +E +       L G W     + C    +
Sbjct: 899 DMLLPDKGSGEEKEKAEQNDEGDALPGTARHREFYPEGVADILKGEWILSGKDACNNSKL 958

Query: 718 LHAYKFNFACSIV--------TEIYSGFVLLIESELDNDV 749
           LH Y +   C  V        T++ S F +L  +ELD +V
Sbjct: 959 LHLYMYTIKCENVGHSKDPFLTQV-SDFAVLFGTELDAEV 997



 Score =  255 bits (651), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 183/548 (33%), Positives = 264/548 (48%), Gaps = 96/548 (17%)

Query: 954  KYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELL 1012
            +YG+ L +  QPL+R +      NLL   F    G    ++    T     +V +PPEL 
Sbjct: 1324 RYGVDLAYKQQPLIRGRGVSYCKNLLSPRFEHSEGHEDETEE---THDKTYYVFLPPELC 1380

Query: 1013 VRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCC 1072
            +   +P S+V+    LPS+M+R+ES++LA QL+  IN     + + +S ILEALT   C 
Sbjct: 1381 LVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMIN-----YPVQASKILEALTAASCQ 1435

Query: 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQG 1132
            E+F  ER ELLGD+ LK+ VS  LFL +P+KHEGQL+  R   V N  L++    + LQ 
Sbjct: 1436 ETFCYERAELLGDAYLKWVVSRFLFLKHPQKHEGQLTRMRQQMVSNMVLYRYALSKGLQS 1495

Query: 1133 YIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD------ 1186
            YI    F P RW APG L   PV  E   D      +   F Q+  +   +  D      
Sbjct: 1496 YILADRFAPSRWAAPGVL---PVFDEDTKDE-----ESSLFDQERSIFKAERMDNTDEFE 1547

Query: 1187 ------------MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSL 1234
                          +R + SKT+AD  EALIG YYV GG  AA ++MKW+GI  +++   
Sbjct: 1548 DEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIHIEIDPDE 1607

Query: 1235 VDDCITRAS-LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQ---- 1287
            + +CIT+ S +   + R  +   +E  +  +F  K LL E+ITHAS       CYQ    
Sbjct: 1608 M-ECITKPSNVPDSILRSVDFDALEGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEF 1666

Query: 1288 ----------------------------------------------NLYKHLQHCSTLLL 1301
                                                          NL+ HL+H S+ L 
Sbjct: 1667 VGDAVLDHLITRHLFFSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALE 1726

Query: 1302 SQITEYVK----SFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFK 1357
             QI ++VK       KPG  +      KAPK LGD+LESI GA+ +D+  N   VW++F+
Sbjct: 1727 KQIKDFVKEVQDELSKPGFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQ 1786

Query: 1358 PILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ 1417
            P+L P+VTP+ L + P+REL E C      ++   +  G +   E+ +   D + VG  Q
Sbjct: 1787 PLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRAGNLATVEVFI---DGVQVGAAQ 1843

Query: 1418 ERSRKAAK 1425
               +K A+
Sbjct: 1844 NPQKKMAQ 1851


>gi|87240866|gb|ABD32724.1| Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease
            III, bacterial [Medicago truncatula]
          Length = 1939

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 299/918 (32%), Positives = 456/918 (49%), Gaps = 121/918 (13%)

Query: 21   PDMGSSGHDHAVDGPSSSTNSINFIP------RIYQLKVFEVAKRRNTIAVLETGAGKTM 74
            P++ +S H   +D P         +P      R YQL V E AK RNTIA LETGAGKT+
Sbjct: 189  PNLHTSQHKMDIDNPIKQEKPKETVPVPEEKARQYQLDVLEQAKTRNTIAFLETGAGKTL 248

Query: 75   IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWD 134
            IAV+LIK I + +     K L +FL P V LV+QQ +VIR  T ++V  Y G  G D WD
Sbjct: 249  IAVLLIKSIHETLHLQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWD 308

Query: 135  SQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194
            ++ WQ+E +   VLVMT QILL+ LR + + ++ +  +++DECHHA   HPY+ +M EFY
Sbjct: 309  ARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFY 368

Query: 195  HKS--DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPS 252
            H +  + +P VFGMTASPV  KGVSS +DC  +I  LES LDS V TI+D+ E+E  VP 
Sbjct: 369  HTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPM 428

Query: 253  AKESCRFYDQSK---FCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLR-- 307
              E    YD++    +    +K ++E    +   S S+    Q    +D   K +  +  
Sbjct: 429  PSEIVVKYDKAASLCYLHEQIK-QMETEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVY 487

Query: 308  ----KQLSDYHAKIL-------YCLDELGLICAYEAVK---ICLEKVLKAQEECEIYRQS 353
                +  SD  A ++       Y L ELG  CAY+  +     L+   +A  + ++  Q 
Sbjct: 488  GVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQE 547

Query: 354  SLQCKYFLEEVLHVIGSAL---PLADKIFLDFGFDYSK---------------------- 388
            S     +L +V+ ++   L    ++DK   + G D S+                      
Sbjct: 548  S-----YLSKVVSLLKCQLSEGAISDK---NDGVDDSQNGAAHSGSDEHEEIEEGELPDS 599

Query: 389  ---------------AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERF 433
                           AV  G ++ K+  L+++ L +  +     IIFVER+++A V+ + 
Sbjct: 600  HVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTDDFRAIIFVERVVSALVLPKV 659

Query: 434  VKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
              ++P L+ +  A L G   S +  T ++  + +  FR G+V LL AT V EEG+ +  C
Sbjct: 660  FAELPSLSFVKCASLIGHNNSQEMRTHQMH-DTIAKFRDGRVTLLVATSVAEEGLDIRQC 718

Query: 494  SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALS 553
            + VIRFDL KTV +YIQSRGRAR+  S +ILM+ERGNL     L +   SE ++   A+ 
Sbjct: 719  NVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLKNARNSEETLRREAIE 778

Query: 554  RDPEACFLKACTYVKTKS-----YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPI 608
            R   +    +   +   +     Y V+STGA V+ +S+V L+H YC  LPSD+Y   +P 
Sbjct: 779  RTDLSHLKDSSRLISVDTHPETMYQVKSTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPE 838

Query: 609  FKYKSAEEA-----YECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALN 663
            F  +  E +     Y C L LP NAPF+ + GP   +  L++Q     AC KLH++GA  
Sbjct: 839  FIMEKHENSGGPTEYSCRLQLPCNAPFENLEGPICSSIRLAQQ---ASACRKLHEMGAFT 895

Query: 664  DHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRW----GEKCG--VI 717
            D LLP      E     + +E     GT + +E +       L G W     + C    +
Sbjct: 896  DMLLPDKGSGEEKEKAEQNDEGDALPGTARHREFYPEGVADILKGEWILSGKDACNNSKL 955

Query: 718  LHAYKFNFACSIV--------TEIYSGFVLLIESELDNDVGNFELELYLV-SKTVKATVS 768
            LH Y +   C  V        T++ S F +L  +ELD +V +  ++L++  + T KA++ 
Sbjct: 956  LHLYMYTIKCENVGHSKDPFLTQV-SDFAVLFGTELDAEVLSMSMDLFIARTVTTKASLV 1014

Query: 769  SSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLL 828
                + +   Q++  K F     + +   L V  + S            + W P+  YL 
Sbjct: 1015 FRESIDITESQLTSLKSFHVRLMSIV---LDVDVEPS-----------TTPWDPAKAYLF 1060

Query: 829  LPLEIVNTFGDGSWRINW 846
            +P+ + +   D   +I+W
Sbjct: 1061 VPM-VGDKSSDPMNQIDW 1077



 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 184/549 (33%), Positives = 264/549 (48%), Gaps = 92/549 (16%)

Query: 954  KYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELL 1012
            +YG+ L +  QPL+R +      NLL   F    G    ++    T     +V +PPEL 
Sbjct: 1292 RYGVDLAYKQQPLIRGRGVSYCKNLLSPRFEHSEGHEDETEE---THDKTYYVFLPPELC 1348

Query: 1013 VRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSL-ILEALTTLGC 1071
            +   +P S+V+    LPS+M+R+ES++LA QL+  IN   +   + S L ILEALT   C
Sbjct: 1349 LVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVQASKVSSQLKILEALTAASC 1408

Query: 1072 CESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQ 1131
             E+F  ER ELLGD+ LK+ VS  LFL +P+KHEGQL+  R   V N  L++    + LQ
Sbjct: 1409 QETFCYERAELLGDAYLKWVVSRFLFLKHPQKHEGQLTRMRQQMVSNMVLYRYALSKGLQ 1468

Query: 1132 GYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD----- 1186
             YI    F P RW APG L   PV  E   D      +   F Q+  +   +  D     
Sbjct: 1469 SYILADRFAPSRWAAPGVL---PVFDEDTKDE-----ESSLFDQERSIFKAERMDNTDEF 1520

Query: 1187 -------------MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVS 1233
                           +R + SKT+AD  EALIG YYV GG  AA ++MKW+GI  +++  
Sbjct: 1521 EDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIHIEIDPD 1580

Query: 1234 LVDDCITRAS-LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQ--- 1287
             + +CIT+ S +   + R  +   +E  +  +F  K LL E+ITHAS       CYQ   
Sbjct: 1581 EM-ECITKPSNVPDSILRSVDFDALEGALNIKFKDKGLLIESITHASRPSSGVSCYQRLE 1639

Query: 1288 -----------------------------------------------NLYKHLQHCSTLL 1300
                                                           NL+ HL+H S+ L
Sbjct: 1640 FVGDAVLDHLITRHLFFSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSAL 1699

Query: 1301 LSQITEYVK----SFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIF 1356
              QI ++VK       KPG  +      KAPK LGD+LESI GA+ +D+  N   VW++F
Sbjct: 1700 EKQIKDFVKEVQDELSKPGFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVF 1759

Query: 1357 KPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEG 1416
            +P+L P+VTP+ L + P+REL E C      ++   +  G +   E+ +   D + VG  
Sbjct: 1760 QPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRAGNLATVEVFI---DGVQVGAA 1816

Query: 1417 QERSRKAAK 1425
            Q   +K A+
Sbjct: 1817 QNPQKKMAQ 1825


>gi|374259480|gb|AEZ02176.1| Dicer [Arabidopsis thaliana]
          Length = 1033

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 275/776 (35%), Positives = 401/776 (51%), Gaps = 77/776 (9%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL V E AK +NTIA LETGAGKT+IA++LIK + + + S   K L +FL P V LV
Sbjct: 250  RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +QQ +VIR  T F+V  Y G  G D WDS+ WQ+E     VLVMT QILL+ LR + + +
Sbjct: 310  YQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHSIIRM 369

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            + +  +++DECHHA   HPY+ +M EFYH +  D +P +FGMTASPV  KGVSS +DC  
Sbjct: 370  ETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAI 429

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
            +I  LE+ LDS V TI+D+ E+E  VP   E    YD++    S  +   ++  +  +A+
Sbjct: 430  KIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAA 489

Query: 285  LSKLQGSQLNCYKDMDDKHKTLRKQL--------SDYHAKIL-------YCLDELGLICA 329
             +  + S+       D   K   +Q+        SD  A ++       Y L ELG  CA
Sbjct: 490  QASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCA 549

Query: 330  YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL----------------- 372
            Y+  +  L   L++ E          Q  Y L EV+ ++   L                 
Sbjct: 550  YKVGQSFL-SALQSDERVNFQVDVKFQESY-LSEVVSLLQCELLEGAAAEKVAAEVGKPE 607

Query: 373  -----------PLADKIFLDFGFDYSK----AVDLGYISTKLHELLQLFLSFGKSTQVLC 417
                        L D   +  G    +    AV  G ++ K+  L++L L +  +     
Sbjct: 608  NGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTADFRA 667

Query: 418  IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
            I+FVER++AA V+ +   ++P L+ +  A + G   S +  + ++Q + +  FR G V L
Sbjct: 668  IVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNSQEMKSSQMQ-DTISKFRDGHVTL 726

Query: 478  LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
            L AT V EEG+ +  C+ V+RFDL KTV +YIQSRGRAR+  S +ILM+ERGN+     L
Sbjct: 727  LVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNVSHAAFL 786

Query: 538  FDIIRSERSVTDTALSRD-----PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 592
             +   SE ++   A+ R       +   L +   V    Y VE+TGA V+ +S+V L+H 
Sbjct: 787  RNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAVGLVHF 846

Query: 593  YCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKNLSKQL 647
            YC  LP D+Y   +P F  +  E+      Y C L LP NAPF+ + GP   +  L++Q 
Sbjct: 847  YCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQA 906

Query: 648  VCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALS 707
            VCL AC+KLH++GA  D LLP      +     + +E  P  GT + +E +       L 
Sbjct: 907  VCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGVADVLK 966

Query: 708  GRW----GEKC--GVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDNDV 749
            G W     E C    + H Y +N  C          ++E+ S F +L  +ELD +V
Sbjct: 967  GEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEV-SEFAILFGNELDAEV 1021


>gi|374259482|gb|AEZ02177.1| Dicer [Arabidopsis thaliana]
          Length = 1886

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 274/773 (35%), Positives = 399/773 (51%), Gaps = 77/773 (9%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL V E AK +NTIA LETGAGKT+IA++LIK + + + S   K L +FL P V LV
Sbjct: 250  RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309

Query: 107  HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +QQ +VIR  T F+V  Y G  G D WDS+ WQ+E     VLVMT QILL+ LR + + +
Sbjct: 310  YQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHSIIRM 369

Query: 167  DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
            + +  +++DECHHA   HPY+ +M EFYH +  D +P +FGMTASPV  KGVSS +DC  
Sbjct: 370  ETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAI 429

Query: 225  QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
            +I  LE+ LDS V TI+D+ E+E  VP   E    YD++    S  +   ++  +  +A+
Sbjct: 430  KIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAA 489

Query: 285  LSKLQGSQLNCYKDMDDKHKTLRKQL--------SDYHAKIL-------YCLDELGLICA 329
             +  + S+       D   K   +Q+        SD  A ++       Y L ELG  CA
Sbjct: 490  QASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCA 549

Query: 330  YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL----------------- 372
            Y+  +  L   L++ E          Q  Y L EV+ ++   L                 
Sbjct: 550  YKVGQSFL-SALQSDERVNFQVDVKFQESY-LSEVVSLLQCELLEGAAAEKVAAEVGKPE 607

Query: 373  -----------PLADKIFLDFGFDYSK----AVDLGYISTKLHELLQLFLSFGKSTQVLC 417
                        L D   +  G    +    AV  G ++ K+  L++L L +  +     
Sbjct: 608  NGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTADFRA 667

Query: 418  IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
            I+FVER++AA V+ +   ++P L+ +  A + G   S +  + ++Q + +  FR G V L
Sbjct: 668  IVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNSQEMKSSQMQ-DTISKFRDGHVTL 726

Query: 478  LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
            L AT V EEG+ +  C+ V+RFDL KTV +YIQSRGRAR+  S +ILM+ERGN+     L
Sbjct: 727  LVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNVSHAAFL 786

Query: 538  FDIIRSERSVTDTALSRD-----PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 592
             +   SE ++   A+ R       +   L +   V    Y VE+TGA V+ +S+V L+H 
Sbjct: 787  RNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAVGLVHF 846

Query: 593  YCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKNLSKQL 647
            YC  LP D+Y   +P F  +  E+      Y C L LP NAPF+ + GP   +  L++Q 
Sbjct: 847  YCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQA 906

Query: 648  VCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALS 707
            VCL AC+KLH++GA  D LLP      +     + +E  P  GT + +E +       L 
Sbjct: 907  VCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGVADVLK 966

Query: 708  GRW----GEKC--GVILHAYKFNFAC--------SIVTEIYSGFVLLIESELD 746
            G W     E C    + H Y +N  C          ++E+ S F +L  +ELD
Sbjct: 967  GEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEV-SEFAILFGNELD 1018



 Score =  279 bits (714), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 236/787 (29%), Positives = 350/787 (44%), Gaps = 159/787 (20%)

Query: 892  KDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD----DSKTF 947
            K  + +A+G + A++L   +V A H+G+ + +  I  + SAE+ F          +  T+
Sbjct: 1173 KGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTY 1232

Query: 948  VNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQMHVH 1006
             +Y+ +KYG+ L    QPL++ +      NLL   F   G S               +V 
Sbjct: 1233 ADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGES-------ETVLDKTYYVF 1285

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            +PPEL V   +  S+++    LPS+M+R+ES++LA QL+  I+     + IP+S ILEAL
Sbjct: 1286 LPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLIS-----YPIPTSKILEAL 1340

Query: 1067 TTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
            T   C E+F  ER ELLGD+ LK+ VS  LFL YP+KHEGQL+  R   V N  L++   
Sbjct: 1341 TAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFAL 1400

Query: 1127 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDG--KFFTQDTKVVVGKP 1184
             + LQ YI+   F P RW APG      VP     DT     DG   FF ++ K V  + 
Sbjct: 1401 VKGLQSYIQADRFAPSRWSAPG------VPPVFDEDT----KDGGSSFFDEEQKPVSEEN 1450

Query: 1185 CDM----------------GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDA 1228
             D+                 +R + SKT+AD  EALIG YYV GG IAA ++MKW+GI  
Sbjct: 1451 SDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHV 1510

Query: 1229 DLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS--VQEFYCY 1286
            + +   VD  +   ++   V +  +   +E  + YEF  K LL EAITHAS       CY
Sbjct: 1511 EDDPDEVDGTLKNVNVPESVLKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCY 1570

Query: 1287 QN--------------------------------------------------LYKHLQHC 1296
            Q                                                   L+ +L+H 
Sbjct: 1571 QRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHG 1630

Query: 1297 STLLLSQITEYVKSF----PKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEV 1352
            S+ L  QI E+VK       KPG  +      KAPK LGD++ESI GA+ +D+  +    
Sbjct: 1631 SSALEKQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAA 1690

Query: 1353 WRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLL 1412
            W++F+P+L P+VTP+ L + P+REL E C      ++   +  G     E+ +   D + 
Sbjct: 1691 WKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFI---DGVQ 1747

Query: 1413 VGEGQERSRKAAK---GKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPP 1469
            VG  Q   +K A+    + A   LK+ E+ E +  +   N G  G        ED  E  
Sbjct: 1748 VGVAQNPQKKMAQKLAARNALAALKEKEIAESK--EKHINNGNAG--------EDQGENE 1797

Query: 1470 SCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFE 1529
            +  ++ G +                       P        R +L  +C    WPMP++ 
Sbjct: 1798 NGNKKNGHQ-----------------------PFT------RQTLNDICLRKNWPMPSYR 1828

Query: 1530 -TTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALI 1588
               E        F  G+   T    +              EC G+P    K + DSAA++
Sbjct: 1829 CVKEGGPAHAKRFTFGVRVNTSDRGWTD------------ECIGEPMPSVKKAKDSAAVL 1876

Query: 1589 MLHELER 1595
            +L  L +
Sbjct: 1877 LLELLNK 1883


>gi|168010516|ref|XP_001757950.1| dsRNA-specific nuclease dicer and related ribonuclease
           [Physcomitrella patens subsp. patens]
 gi|162690827|gb|EDQ77192.1| dsRNA-specific nuclease dicer and related ribonuclease
           [Physcomitrella patens subsp. patens]
          Length = 1662

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 280/810 (34%), Positives = 419/810 (51%), Gaps = 88/810 (10%)

Query: 60  RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119
           +NTIA LETGAGKT+IAV+L+K   Q ++  G + L +FL P V LV+QQ +VIR  T+F
Sbjct: 2   KNTIAFLETGAGKTLIAVLLMKHKYQVLREQGRRMLAVFLVPKVPLVYQQAEVIRNGTNF 61

Query: 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH 179
            V  Y G  G D WD++ WQ+E +  D+ VMT QILL+ LR + + ++ +  +++DECHH
Sbjct: 62  VVGHYCGEMGQDFWDARRWQREFDTRDIFVMTAQILLNILRHSIVRMEAIHLLILDECHH 121

Query: 180 ATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQV 237
           A   HPY+ +M EFYH +  D +P VFGMTASPV  KGVS+  DC  +I  LES LDS V
Sbjct: 122 AVKKHPYSLVMSEFYHVTPKDKRPCVFGMTASPVNLKGVSNQEDCAIKIRNLESKLDSIV 181

Query: 238 FTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD-ASLSKLQGSQLNCY 296
            TI+D+ E+E  VP   E    YD+     S L+ ++++  S  + A+ + ++ S+    
Sbjct: 182 CTIKDRKELEKHVPMPSEIMVLYDKPALLFS-LREEIKLMESTVEEAANASVRRSKWKFM 240

Query: 297 KDMDDKHKT-LR--------------KQLSDYHAKILYCLDELGLICAYEAVKICLEKVL 341
              D   K  LR                LS     I+Y LDELG  CAY   K+ L  + 
Sbjct: 241 GARDAGAKEELRLVYGVAERTESDGAASLSQKLRAIIYALDELGQWCAY---KVSLTYLT 297

Query: 342 KAQEECEIYRQSSLQCK-YFLEEV-------LH--VIGSALP------------------ 373
             + +  I  Q  ++ +  +L++V       LH   + S  P                  
Sbjct: 298 SLRNDERISHQLDVKFQEMYLKKVCALLRCNLHEGAVASKAPAEIGESVAVEGDKAQDPM 357

Query: 374 ------LADKIFLDFGFDYSK----AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVER 423
                 L D   +  G    +    AV  G ++ K+  L+++ L +  +     IIFVER
Sbjct: 358 DVEEGELPDSQAVSVGEHVDEILGAAVADGKVTPKVQSLIKILLRYQHTDDFRAIIFVER 417

Query: 424 IIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDV 483
           ++AA+V+ +   ++P L  +  A L G   + D  T ++Q E +  FR G+V LL AT V
Sbjct: 418 VVAAQVLPKVFAELPSLKFVKCASLIGHNNNQDMRTRQMQ-ETISQFRDGRVTLLVATSV 476

Query: 484 IEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRS 543
            EEG+ +  C+ VIRFDL KTV +YIQSRGRAR+  S +ILMLERGN + +  L +   S
Sbjct: 477 AEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMLERGNQQHKVFLRNAKNS 536

Query: 544 ERSVTDTALSRDP-----EACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLP 598
           E ++   A+ R       E   L +      + Y V +TGA V+ +S+V LIH YC  LP
Sbjct: 537 EETLRKEAIERTDLGERRENAILASMDLGDREIYQVPATGAVVSMNSAVGLIHFYCSQLP 596

Query: 599 SDKYYTPKPIFKYKSAEEA-----YECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEAC 653
           SD+Y   +P F     E       Y C+L LP NAP + + GP   +   ++Q VCLEAC
Sbjct: 597 SDRYSILRPEFIMNKIESQGGAVRYSCKLQLPCNAPLENVDGPECNSLRGAQQSVCLEAC 656

Query: 654 EKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRW--- 710
           ++LH++GA  D LLP      E   +    E  P  GT++ +E +       L G W   
Sbjct: 657 KRLHEMGAFTDMLLPDKGSGEEAAKVEGSEEGEPLPGTSRHREYYPEGIADILKGDWILA 716

Query: 711 ----GEKCGVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDNDVGNFELELYL 758
                 K G  +  Y +   C        +++TE  S FV+L+  +L ++V +  ++L++
Sbjct: 717 DKDPDAKPGSNVLVYVYMVKCENVGFSKDNLLTET-SDFVILVGQKLQDEVLDMTMDLFV 775

Query: 759 VSKTV-KATVSSSGQVHLDADQMSKAKCFQ 787
               + +A++   G + L   +++  K F 
Sbjct: 776 ARTMITRASLEFCGNLDLSLHELTDLKSFH 805



 Score =  288 bits (738), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 234/769 (30%), Positives = 347/769 (45%), Gaps = 146/769 (18%)

Query: 897  LANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPF---DGNTDD-DSKTFVNYFS 952
            +A+G V+ + L   +V A+H+G+ + +  +  + +A+S F   DG     +  ++ +Y+ 
Sbjct: 947  IADGFVEVEGLVGRIVTAVHSGKRFYVDSVRFDMTADSSFPQKDGYLGPLEYTSYADYYK 1006

Query: 953  EKYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL 1011
            +KYG+ L+   QPLLR +   +  NLL   F    G   G+   ++      +V +PPEL
Sbjct: 1007 QKYGVELVCKKQPLLRGRGVSHCKNLLSPRFETSTG---GTLDSLDALDKTYYVMLPPEL 1063

Query: 1012 LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGC 1071
             +   +P S+V+    LPSVM+R+ES++LA QL+ +I+     + I +S +LEALT   C
Sbjct: 1064 CLIHPLPGSLVRGAQRLPSVMRRVESMLLAIQLKHQID-----YPIAASKVLEALTAASC 1118

Query: 1072 CESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQ 1131
             E+FS ER ELLGD+ LK+ VS  LFL YP KHEGQL+  R   V NS L++   D+ LQ
Sbjct: 1119 QETFSYERAELLGDAYLKWVVSRRLFLKYPCKHEGQLTRMRQQIVSNSVLYQYALDKGLQ 1178

Query: 1132 GYIRDSAFDPRRWVAPG------------QLSLRPVPCECGVDTLE-VPLDGKFFTQDTK 1178
             YI+   F P RW APG              S + +  E   + +E V  +G+   ++  
Sbjct: 1179 SYIQADRFAPSRWAAPGVPPVFDEDIKDGDDSDKSLKAEASREVVEIVSEEGEIVVKELS 1238

Query: 1179 VVVGKPCD-------MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLE 1231
                   D         +R + SKT+AD  EA IG YYV GG  AA ++M W+GI  + +
Sbjct: 1239 TESASMEDGEIEGDSSAYRVLSSKTLADVVEAFIGIYYVEGGQDAATHLMNWIGIPVEFD 1298

Query: 1232 VSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQNL 1289
             +  +  I    +   V    +   +E+ IG++F  + LL EAITHAS       CYQ L
Sbjct: 1299 DAEAELAIGGCEVPETVMLSIDFDSLEASIGHKFRKRSLLVEAITHASRPSSGVPCYQRL 1358

Query: 1290 --------------------------------------------------YKHLQHCSTL 1299
                                                              + HL+H S+ 
Sbjct: 1359 EFVGDAVLDYLITRFLFFKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSA 1418

Query: 1300 LLSQITEYVKS----FPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRI 1355
            L +QI  +V        KPG  +      KAPK LGD+LESI GA+ +D  L  D VW++
Sbjct: 1419 LETQIRNFVNDIQTELDKPGVNSFGLGDFKAPKVLGDILESIAGALFLDACLETDHVWKV 1478

Query: 1356 FKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGE 1415
            F+P+L P+VTP+ L + P+REL E C      ++   +  G +   E+ +   D + +G 
Sbjct: 1479 FEPLLQPMVTPETLPMHPVRELQERCQQQAEALEYKASRAGNVATVEVYV---DGVQIGS 1535

Query: 1416 GQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQK 1475
             Q   +K A+  AA   L  L+  EK ++K  S                          +
Sbjct: 1536 AQNAQKKMAQKLAARNALVILK--EKEVTKEKSEA------------------------E 1569

Query: 1476 GTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKS 1535
             +EA    G S K               N      R +L  LC    WPMP +       
Sbjct: 1570 NSEAN--NGKSSK---------------NGHTNFTRQTLNDLCLKRQWPMPQY------- 1605

Query: 1536 RTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDS 1584
            R +L       K+  FS  V   T    E    EC GDP    K + DS
Sbjct: 1606 RCVLEGGPAHAKKFTFSVRVLTTTDGWTE----ECVGDPMPSVKKAKDS 1650


>gi|157285009|gb|ABV31244.1| dicer-like 1 [Physcomitrella patens]
          Length = 1662

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 280/810 (34%), Positives = 418/810 (51%), Gaps = 88/810 (10%)

Query: 60  RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119
           +NTIA LETGAGKT+IAV+L+K   Q ++  G + L +FL P V LV+QQ +VIR  T+F
Sbjct: 2   KNTIAYLETGAGKTLIAVLLMKHKYQVLREQGRRMLAVFLVPKVPLVYQQAEVIRNGTNF 61

Query: 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH 179
            V  Y G  G D WD++ WQ+E +  D+ VMT QILL+ LR + + ++ +  +++DECHH
Sbjct: 62  VVGHYCGEMGQDFWDARRWQREFDTRDIFVMTAQILLNILRHSIVRMEAIHLLILDECHH 121

Query: 180 ATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQV 237
           A   HPY+ +M EFYH +  D +P VFGMTASPV  KGVS+  DC  +I  LES LDS V
Sbjct: 122 AVKKHPYSLVMPEFYHVTPKDKRPCVFGMTASPVNLKGVSNQEDCAIKIRNLESKLDSIV 181

Query: 238 FTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD-ASLSKLQGSQLNCY 296
            TI+D+ E+E  VP   E    YD+     S L+ ++++  S  + A+ + ++ S+    
Sbjct: 182 CTIKDRKELEKHVPMPSEIMVLYDKPALLFS-LREEIKLMESTVEEAANASVRRSKWKFM 240

Query: 297 KDMDDKHKT-LR--------------KQLSDYHAKILYCLDELGLICAYEAVKICLEKVL 341
              D   K  LR                LS     I+Y LDELG  CAY   K+ L  + 
Sbjct: 241 GARDAGAKEELRLVYGVAERTESDGAASLSQKLRAIIYALDELGQWCAY---KVSLTYLT 297

Query: 342 KAQEECEIYRQSSLQCK-YFLEEV-------LH--VIGSALP------------------ 373
             + +  I  Q  ++ +  +L++V       LH   + S  P                  
Sbjct: 298 SLRNDERISHQLDVKFQEMYLKKVCALLRCNLHEGAVASKAPAEIGESVAVEGDKAQDPM 357

Query: 374 ------LADKIFLDFGFDYSK----AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVER 423
                 L D   +  G    +    AV  G ++ K+  L+++ L +  +     IIFVER
Sbjct: 358 DVEEGELPDSQAVSVGEHVDEILGAAVADGKVTPKVQSLIKILLRYQHTDDFRAIIFVER 417

Query: 424 IIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDV 483
           ++AA+V+ +   ++P L  +  A L G   + D  T ++Q E +  FR G+V LL AT V
Sbjct: 418 VVAAQVLPKVFAELPSLKFVKCASLIGHNNNQDMRTRQMQ-ETISQFRDGRVTLLVATSV 476

Query: 484 IEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRS 543
            EEG+ +  C+ VIRFDL KTV +YIQSRGRAR+  S +ILMLERGN + +  L +   S
Sbjct: 477 AEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMLERGNQQHKVFLRNAKNS 536

Query: 544 ERSVTDTALSRDP-----EACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLP 598
           E ++   A+ R       E   L +      + Y V +TGA V+ +S+V LIH YC  LP
Sbjct: 537 EETLRKEAIERTDLGERRENAILASMDLGDREIYQVPATGAVVSMNSAVGLIHFYCSQLP 596

Query: 599 SDKYYTPKPIFKYKSAEEA-----YECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEAC 653
           SD+Y   +P F     E       Y C+L LP NAP + + GP   +   ++Q VCLEAC
Sbjct: 597 SDRYSILRPEFIMNKIESQGGAVRYSCKLQLPCNAPLENVDGPECNSLRGAQQSVCLEAC 656

Query: 654 EKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRW--- 710
           ++LH++GA  D LLP      E   +    E  P  GT++ +E +       L G W   
Sbjct: 657 KRLHEMGAFTDMLLPDKGSGEEAAKVEGSEEGEPLPGTSRHREYYPEGIADILKGDWILA 716

Query: 711 ----GEKCGVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDNDVGNFELELYL 758
                 K G  +  Y +   C        +++TE  S FV+L+  +L + V +  ++L++
Sbjct: 717 DKDPDAKPGSNVLVYVYMVKCENVGFSKDNLLTET-SDFVILVGQKLQDQVLDMTMDLFV 775

Query: 759 VSKTV-KATVSSSGQVHLDADQMSKAKCFQ 787
               + +A++   G + L   +++  K F 
Sbjct: 776 ARTMITRASLEFCGNLDLSLHELTDLKSFH 805



 Score =  287 bits (735), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 232/769 (30%), Positives = 348/769 (45%), Gaps = 146/769 (18%)

Query: 897  LANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPF---DGNTDD-DSKTFVNYFS 952
            +A+G V+ + L   +V A+H+G+ + +  +  + +A+S F   DG     +  ++ +Y+ 
Sbjct: 947  IADGFVEVEGLVGRIVTAVHSGKRFYMDSVRFDMTADSSFPQKDGYLGPLEYTSYADYYK 1006

Query: 953  EKYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL 1011
            +KYG+ L+   QPLLR +   +  NLL   F    G   G+   ++      +V +PPEL
Sbjct: 1007 QKYGVELVCKKQPLLRGRGVSHCKNLLSPRFETSTG---GTLDSLDALDKTYYVMLPPEL 1063

Query: 1012 LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGC 1071
             +   +P S+V+    LPSVM+R+ES++LA QL+ +I+     + I +S +LEALT   C
Sbjct: 1064 CLIHPLPGSLVRGAQRLPSVMRRVESMLLAIQLKHQID-----YPIAASKVLEALTAASC 1118

Query: 1072 CESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQ 1131
             E+FS ER ELLGD+ LK+ VS  LFL YP KHEGQL+  R   V NS L++   D+ LQ
Sbjct: 1119 QETFSYERAELLGDAYLKWVVSRRLFLKYPCKHEGQLTRMRQQIVSNSVLYQYALDKGLQ 1178

Query: 1132 GYIRDSAFDPRRWVAPG------------QLSLRPVPCECGVDTLE-VPLDGKFFTQDTK 1178
             YI+   F P RW APG              S + +  E   + +E V  +G+   ++  
Sbjct: 1179 SYIQADRFAPSRWAAPGVPPVFDEDIKDGDDSDKSLKAEASREVVEIVSEEGEIVVKELS 1238

Query: 1179 VVVGKPCD-------MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLE 1231
                   D         +R + SKT+AD  EA IG YYV GG  AA ++M W+GI  + +
Sbjct: 1239 TESASMEDGEIEGDSSAYRVLSSKTLADVVEAFIGIYYVEGGQDAATHLMNWIGIPVEFD 1298

Query: 1232 VSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--------- 1282
             +  +  I    +   V    +   +E+ IG++F  + LL EAITHAS            
Sbjct: 1299 DAEAELAIGGCEVPETVMLSIDFDSLEASIGHKFRKRSLLVEAITHASRPSSGVPGYQRL 1358

Query: 1283 ----------------FYCYQNL---------------------------YKHLQHCSTL 1299
                            F+ Y +L                           + HL+H S+ 
Sbjct: 1359 EFVGDAVLDYLITRFLFFKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSA 1418

Query: 1300 LLSQITEYVKS----FPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRI 1355
            L +QI  +V        KPG  +      KAPK LGD+LESI GA+ +D  L  D VW++
Sbjct: 1419 LETQIRNFVNDIQTELDKPGVNSFGLGDFKAPKVLGDILESIAGALFLDACLETDHVWKV 1478

Query: 1356 FKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGE 1415
            F+P+L P+VTP+ L + P+REL E C      ++   +  G +   E+ +   D + +G 
Sbjct: 1479 FEPLLQPMVTPETLPMHPVRELQERCQQQAEALEYKASRAGNVATVEVYV---DGVQIGS 1535

Query: 1416 GQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQK 1475
             Q   +K A+  AA   L  L+  EK ++K  S                          +
Sbjct: 1536 AQNAQKKMAQKLAARNALVILK--EKEVTKEKSEA------------------------E 1569

Query: 1476 GTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKS 1535
             +EA    G S K  +                   R +L  LC    WPMP +       
Sbjct: 1570 NSEAN--NGKSSKNGHTNFT---------------RQTLNDLCLKRQWPMPQY------- 1605

Query: 1536 RTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDS 1584
            R +L       K+  FS  V   T    E    EC GDP    K + DS
Sbjct: 1606 RCVLEGGPAHAKKFTFSVRVLTTTDGWTE----ECVGDPMPSVKKAKDS 1650


>gi|302772092|ref|XP_002969464.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii]
 gi|300162940|gb|EFJ29552.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii]
          Length = 1255

 Score =  408 bits (1049), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 283/934 (30%), Positives = 451/934 (48%), Gaps = 164/934 (17%)

Query: 49  YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
           YQL+V E   + NTI  LETGAGKT IA ML   +A  +     K++ +FL PTV L  Q
Sbjct: 2   YQLEVLEKVLKENTIVFLETGAGKTHIAAMLFNKLADRLSMPEEKRIGVFLTPTVALADQ 61

Query: 109 QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI 168
           Q +VI   T  +V  Y+G + +D WD + W +EI+ + VLVMT Q+L ++L+ + + +++
Sbjct: 62  QANVISSSTRLKVGVYHGGQ-MDTWDVRKWSEEIDSHQVLVMTAQVLFNSLQLSAIRMEM 120

Query: 169 VCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISE 228
           +  ++ DECH A  NHPY  +MK                                     
Sbjct: 121 IEVLIFDECHRAQNNHPYASVMK------------------------------------- 143

Query: 229 LESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKL 288
                   ++TI  + E+E  VP+      +YD++  C  +L+  L     K +  +   
Sbjct: 144 --------IYTITSRAELEEKVPTPFYRNLYYDKAHHCFKELRRCLTDLLDKVNVII--- 192

Query: 289 QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA-----------------YE 331
                  Y D + K    R + S+ +  I   L +LGL  A                  +
Sbjct: 193 -------YLDENKK----RSKFSNLYNAITSSLLDLGLWSAVLVKNYIFFSCFGLTYVLQ 241

Query: 332 AVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVD 391
           AV++ L K+     +  +  + +   + FL+E  +++ S +P      +    D  KAV+
Sbjct: 242 AVEVLL-KIDPEGTKPPVDNEDTNDEQRFLKEAYNILKSFVPGDSVSSISSPEDAKKAVN 300

Query: 392 LGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS 451
            G +++K+  LL++ + +       C+IFVER++  ++                      
Sbjct: 301 SGLLTSKVKALLKILVRYRNVEPFRCMIFVERVVVTQL---------------------- 338

Query: 452 TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
                                   N+L  T V EEG+ V +C+ V+RFD+ +T+ S+IQS
Sbjct: 339 ------------------------NVLICTSVAEEGLDVQSCNCVVRFDICRTLRSFIQS 374

Query: 512 RGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS 571
           RGRAR+ ++ ++ +LERGNL+Q + L +++ SE  +   ALSR  +   +          
Sbjct: 375 RGRARKRDATYMFLLERGNLEQESLLMELVNSEELMRAEALSRMSKTIEITPLIDADL-D 433

Query: 572 YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKP---IFKYKS-AEEAYECELTLPSN 627
           +   ++GA ++TD +V+ I+RYC  LP D+YY PKP   + K +S  EE + C +T P N
Sbjct: 434 FFYTTSGACISTDGAVSFIYRYCSQLPGDRYYNPKPEIEVTKCESDNEELFSCTITFPPN 493

Query: 628 APFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLP 687
           AP   + GP  RNK L+K++ CLEAC +L  +GAL +   P V E        K     P
Sbjct: 494 APLHVLTGPPKRNKQLAKKVACLEACRQLDALGALGERHPPEVRE-------EKMASEGP 546

Query: 688 GAGTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELD 746
           G G+TK KEL  +        +W      +ILH Y   F        Y+ F LL ++ LD
Sbjct: 547 GLGSTKLKELFPSIKSTTYQRQWITTSTDIILHIYALIFHPEENGSTYTNFGLLFDAALD 606

Query: 747 NDVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKL-FVKSKS 804
           +DVGN E+ LYL  ++ VKA +SS+GQ  +D+ Q++ AK +QE+ FNG F +L F + K+
Sbjct: 607 DDVGNIEVNLYLTKNRAVKAKLSSAGQRRVDSVQLAAAKAYQEIMFNGAFSRLVFREDKN 666

Query: 805 SGSREFFLKRET---NSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKE 861
             +    L   T   N LWS +  YLLLP+       DGS  I+W+ +  CA   + +  
Sbjct: 667 DRTLATCLLSSTEKANELWSET--YLLLPIL------DGSCDIDWNIVTRCADAAKLL-- 716

Query: 862 KSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIY 921
                 + C +    +  C   P         +I+ A+G V    L+D VVL +HTG+++
Sbjct: 717 -----PSLC-SELNKTEVCMERP------DAGLIYTASGPVSPGALQDAVVLTVHTGKLF 764

Query: 922 SIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKY 955
           SIVE++ +  A+S F  N + +  T+  ++  KY
Sbjct: 765 SIVEVLEDLGAQSTFKENEESEPCTYEEFYLRKY 798



 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 155/443 (34%), Positives = 213/443 (48%), Gaps = 59/443 (13%)

Query: 1050 CHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLS 1109
            CH  N     S ILEA T+L C + FS E LELLGDSVLKYAV+  L+L +   HEG+LS
Sbjct: 806  CHMYN---AFSQILEARTSLRCQDGFSYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELS 862

Query: 1110 ARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLD 1169
             RRS A+CNSTL KL   + L  Y+RD  F P  WV  G    R   C C +D L     
Sbjct: 863  DRRSHAICNSTLRKLAVAQDLPMYVRDEPFYPSYWVGAGMYRQRSRKCCCRLDNLVTKES 922

Query: 1170 GKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1229
             K    D    VGK C  GHRWM SKT +D  EALIGAY VGGG   AL  MK L +D D
Sbjct: 923  SKPRPTDATYYVGKTCGQGHRWMCSKTTSDALEALIGAYTVGGGFDGALEFMKALQVDVD 982

Query: 1230 LEVSLVDDCITR-ASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE-FYCYQ 1287
             +  L+     R   L +    +  +  +E ++ Y F  K LL EAITHAS  +  +CYQ
Sbjct: 983  FDSGLIAASQHRPVPLDAVQFHMPALLSLEKELCYTFQNKALLLEAITHASTPDTVFCYQ 1042

Query: 1288 --------------------------------------------------NLYKHLQHCS 1297
                                                               L+ +L+H S
Sbjct: 1043 RLEFIGDAVLDFLVTRHLFTSHPGLSPGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGS 1102

Query: 1298 TLLLSQITEYVKSFPKPGETTD--SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRI 1355
              L ++I  ++    +  E +      ++  PKAL D++ES+ GA+L+D+  + +++W +
Sbjct: 1103 AELRAKINSFLDVLDRDPECSVMFGFKALSGPKALADIVESVAGAILVDSGFDFEKLWVV 1162

Query: 1356 FKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGE 1415
             K +LSP VTP  L   P+RE  ELC    +  +   +  G    AE+ L+  +      
Sbjct: 1163 LKRLLSPFVTPATLSFHPVREFHELCSYKSWEFEWVQSSSG--ATAEILLKAGEQRFTEV 1220

Query: 1416 GQERSRKAAKGKAASQLLKKLEV 1438
               +++K A+   A +LL  L+V
Sbjct: 1221 SSIKNKKDARKDVAEKLLTMLKV 1243



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 17/121 (14%)

Query: 1038 LMLASQLREEINCHSRNFHIPS---------------SLILEALTTLGCCES-FSMERLE 1081
            L+ ASQ R  +   +  FH+P+               +L+LEA+T     ++ F  +RLE
Sbjct: 987  LIAASQHRP-VPLDAVQFHMPALLSLEKELCYTFQNKALLLEAITHASTPDTVFCYQRLE 1045

Query: 1082 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
             +GD+VL + V+ HLF ++P    G LS  RS +V N  L ++    +L  Y+R  + + 
Sbjct: 1046 FIGDAVLDFLVTRHLFTSHPGLSPGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAEL 1105

Query: 1142 R 1142
            R
Sbjct: 1106 R 1106


>gi|6715634|gb|AAF26461.1|AC007323_2 T25K16.4 [Arabidopsis thaliana]
          Length = 2024

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 296/930 (31%), Positives = 444/930 (47%), Gaps = 149/930 (16%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
            R YQL V E AK +NTIA LETGAGKT+IA++LIK + + + S   K L +FL P V LV
Sbjct: 250  RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309

Query: 107  HQ-------QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKE--------------INKN 145
            +Q       Q +VIR  T F+V  Y G  G D WDS+ WQ+E               +  
Sbjct: 310  YQVPPNKKHQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQFLKLTSFFLFSST 369

Query: 146  DVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKV 203
             VLVMT QILL+ LR + + ++ +  +++DECHHA   HPY+ +M EFYH +  D +P +
Sbjct: 370  QVLVMTAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAI 429

Query: 204  FGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQS 263
            FGMTASPV  KGVSS +DC  +I  LE+ LDS V TI+D+ E+E  VP   E    YD++
Sbjct: 430  FGMTASPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKA 489

Query: 264  KFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQL--------SDYHA 315
                S  +   ++  +  +A+ +  + S+       D   K   +Q+        SD  A
Sbjct: 490  ATMWSLHETIKQMIAAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAA 549

Query: 316  KIL-------YCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI 368
             ++       Y L ELG  CAY+  +  L   L++ E          Q  Y L EV+ ++
Sbjct: 550  NLIHKLRAINYTLAELGQWCAYKVGQSFL-SALQSDERVNFQVDVKFQESY-LSEVVSLL 607

Query: 369  GSAL----------------------------PLADKIFLDFGFDYSK----AVDLGYIS 396
               L                             L D   +  G    +    AV  G ++
Sbjct: 608  QCELLEGAAAEKVAAEVGKPENGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVT 667

Query: 397  TKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGST 452
             K+  L++L L +  +     I+FVER++AA V+ +   KV    P L+ +  A + G  
Sbjct: 668  PKVQSLIKLLLKYQHTADFRAIVFVERVVAALVLPKVRIKVFAELPSLSFIRCASMIGHN 727

Query: 453  TSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
             S +  + ++Q + +  FR G V LL AT V EEG+ +  C+ V+RFDL KTV +YIQSR
Sbjct: 728  NSQEMKSSQMQ-DTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSR 786

Query: 513  GRARQHNSQFILMLE------------------------------RGNLKQRNKLFDIIR 542
            GRAR+  S +ILM+E                              RGN+     L +   
Sbjct: 787  GRARKPGSDYILMVERYIKSFKNYILIFVTTGHQISTDMSTCVTCRGNVSHAAFLRNARN 846

Query: 543  SERSVTDTALSRD-----PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEML 597
            SE ++   A+ R       +   L +   V    Y VE+TGA V+ +S+V L+H YC  L
Sbjct: 847  SEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAVGLVHFYCSQL 906

Query: 598  PSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKNLSKQL-VCLE 651
            P D+Y   +P F  +  E+      Y C L LP NAPF+ + GP   +  L++Q+ + + 
Sbjct: 907  PGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQVDIIVS 966

Query: 652  ACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRW- 710
            AC+KLH++GA  D LLP      +     + +E  P  GT + +E +       L G W 
Sbjct: 967  ACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGVADVLKGEWV 1026

Query: 711  ---GEKC--GVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDNDVGNFELELY 757
                E C    + H Y +N  C          ++E+ S F +L  +ELD +V +  ++LY
Sbjct: 1027 SSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEV-SEFAILFGNELDAEVLSMSMDLY 1085

Query: 758  LVSKTV-KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRET 816
            +    + KA+++  G + +  +Q+S  K F     + +   L V  + S           
Sbjct: 1086 VARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIV---LDVDVEPS----------- 1131

Query: 817  NSLWSPSYMYLLLPLEIVNTFGDGSWRINW 846
             + W P+  YL +P+   NT  +    INW
Sbjct: 1132 TTPWDPAKAYLFVPV-TDNTSMEPIKGINW 1160



 Score =  201 bits (512), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 218/455 (47%), Gaps = 79/455 (17%)

Query: 892  KDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD----DSKTF 947
            K  + +A+G + A++L   +V A H+G+ + +  I  + SAE+ F          +  T+
Sbjct: 1252 KGKLMMADGCMVAEDLIGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTY 1311

Query: 948  VNYFSEK--------------------------------YGIVLIHPGQPLLRLKQSHNP 975
             +Y+ +K                                YG+ L    QPL++ +     
Sbjct: 1312 ADYYKQKIYVVQDRLFFYFLHNLRLLRLYKSSSIMLFIRYGVDLNCKQQPLIKGRGVSYC 1371

Query: 976  HNLLV-NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQR 1034
             NLL   F   G S               +V +PPEL V   +  S+++    LPS+M+R
Sbjct: 1372 KNLLSPRFEQSGES-------ETVLDKTYYVFLPPELCVVHPLSGSLIRGAQRLPSIMRR 1424

Query: 1035 LESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSC 1094
            +ES++LA QL+  I+     + IP+S ILEALT   C E+F  ER ELLGD+ LK+ VS 
Sbjct: 1425 VESMLLAVQLKNLIS-----YPIPTSKILEALTAASCQETFCYERAELLGDAYLKWVVSR 1479

Query: 1095 HLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRP 1154
             LFL YP+KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG      
Sbjct: 1480 FLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG------ 1533

Query: 1155 VPCECGVDTLEVPLDG--KFFTQDTKVVVGKPCDM----------------GHRWMGSKT 1196
            VP     DT     DG   FF ++ K V  +  D+                 +R + SKT
Sbjct: 1534 VPPVFDEDT----KDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKT 1589

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD 1256
            +AD  EALIG YYV GG IAA ++MKW+GI  + +   VD  +   ++   V +  +   
Sbjct: 1590 LADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEVDGTLKNVNVPESVLKSIDFVG 1649

Query: 1257 IESKIGYEFTVKFLLQEAITHAS--VQEFYCYQNL 1289
            +E  + YEF  K LL EAITHAS       CYQ L
Sbjct: 1650 LERALKYEFKEKGLLVEAITHASRPSSGVSCYQRL 1684



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 126/305 (41%), Gaps = 62/305 (20%)

Query: 1299 LLLSQITEYVKSF----PKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWR 1354
            L + QI E+VK       KPG  +      KAPK LGD++ESI GA+ +D+  +    W+
Sbjct: 1771 LFVFQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWK 1830

Query: 1355 IFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVG 1414
            +F+P+L P+VTP+ L + P+REL E C      ++   +  G     E+ +   D + VG
Sbjct: 1831 VFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFI---DGVQVG 1887

Query: 1415 EGQERSRKAAK---GKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSC 1471
              Q   +K A+    + A   LK+ E+ E +  +   N G  G        ED  E  + 
Sbjct: 1888 VAQNPQKKMAQKLAARNALAALKEKEIAESK--EKHINNGNAG--------EDQGENENG 1937

Query: 1472 KRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFE-T 1530
             ++ G +                       P        R +L  +C    WPMP++   
Sbjct: 1938 NKKNGHQ-----------------------PFT------RQTLNDICLRKNWPMPSYRCV 1968

Query: 1531 TESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIML 1590
             E        F  G+   T    +              EC G+P    K + DSAA+++L
Sbjct: 1969 KEGGPAHAKRFTFGVRVNTSDRGWTD------------ECIGEPMPSVKKAKDSAAVLLL 2016

Query: 1591 HELER 1595
              L +
Sbjct: 2017 ELLNK 2021



 Score = 48.5 bits (114), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 35/225 (15%)

Query: 1003 MHVHMPPE----LLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIP 1058
            +HV   P+     L  V+VP SV+KS+  +   ++R     L  + +E+           
Sbjct: 1619 IHVEDDPDEVDGTLKNVNVPESVLKSIDFVG--LER----ALKYEFKEK----------- 1661

Query: 1059 SSLILEALTTLGCCES--FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1116
              L++EA+T      S     +RLE +GD+VL + ++ HLF TY     G+L+  R+ AV
Sbjct: 1662 -GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAV 1720

Query: 1117 CNSTLHKLGTDRKLQGYIR--DSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFT 1174
             N    ++    KL  Y+R   SA + +      Q  L     +C    L      + F 
Sbjct: 1721 NNENFARVAVKHKLHLYLRHGSSALEKQVNKIKKQSILFSKSFKCLTVWLLFVFQIREFV 1780

Query: 1175 QDTKVVVGKPCDMGHRWMG------SKTIADCAEALIGAYYVGGG 1213
            ++ +    KP   G    G       K + D  E++ GA ++  G
Sbjct: 1781 KEVQTESSKP---GFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1822


>gi|147833654|emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera]
          Length = 1296

 Score =  392 bits (1007), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 325/1081 (30%), Positives = 501/1081 (46%), Gaps = 166/1081 (15%)

Query: 380  LDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
            L  G D     + G+++TK+  L+   L +     + CI+FVER+I A V+++ + K+  
Sbjct: 256  LSVGDDLEADAESGFLTTKVICLVGSLLQYRHLKNLRCIVFVERVITAIVLQKLLSKLLP 315

Query: 440  LTH-LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
                    Y+ G+ + + + + +VQ  ++E FR G VN++ +T ++EEG+ V +C+ VIR
Sbjct: 316  KLSGWEAGYIAGNASQLQSQSRRVQNALVEEFRKGMVNVIVSTSILEEGLDVQSCNLVIR 375

Query: 499  FDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEA 558
            FD   TV S+IQSRGRAR  NS ++LM+  G+ K  ++L   + S + + + +L      
Sbjct: 376  FDPSATVCSFIQSRGRARMQNSDYLLMVRSGDDKTLSRLRTYLDSGKVMREESLRNASLP 435

Query: 559  CFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAY 618
            C     +    + Y VEST A VT  SS+ L++ YC  LPSD Y+ P P  +    ++  
Sbjct: 436  CAPLKSSLDDEEFYWVESTRAIVTLSSSIGLLYFYCSRLPSDGYFKPTP--RCSINQDMG 493

Query: 619  ECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNL 678
             C + LP + P QT+      N    KQ+ CLEAC++LH+ GAL D+L+P +    E   
Sbjct: 494  TCTIYLPKSCPIQTV--SVRGNIKTLKQIACLEACKELHKAGALTDNLVPQI---VEEEA 548

Query: 679  ISKKNESLP---GAGTTKRKELHGTT---PIRALSGRWGEKCGVILHAYKFNFACSIVTE 732
            I  ++E++P      T    EL   +   P+          C +I    K+ +  S    
Sbjct: 549  IVAQDENMPYDDEQATYYPPELINPSLKDPVTPY------HCYLIELBQKYEYEVSP--- 599

Query: 733  IYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFN 792
               G VL + SEL+ DVGN   +L +   T+  +++  G +HL A+Q+   + FQ     
Sbjct: 600  --QGIVLAVRSELEYDVGNVNFDLQVDRGTMTVSMNYVGVIHLTAEQVLMCRKFQITLLR 657

Query: 793  GLFGKLFVKS-------KSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRIN 845
             L  +   K         +    ++ +   TNS   PS                    ++
Sbjct: 658  VLIDRAIDKGVFDRYDLGNDQMVDYLMLPSTNSREIPSI-------------------VD 698

Query: 846  WSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAK 905
            W     C   V F  E +       +N+ G   P               +H  +G V + 
Sbjct: 699  WK----CLGSVFFSHENA-------SNHMGCFFP--------------RMHTKSGFVCSC 733

Query: 906  NLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQP 965
             LK+ +V   HT + Y I  I+   +  S F    +    T+  Y+  ++GI L   G+ 
Sbjct: 734  TLKNSIVYTPHTSQFYCITGILGELNGNS-FLSLKNGGLLTYKEYYXLRHGIELQFDGEK 792

Query: 966  LLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLV--RVDVPISVVK 1023
            LL+ ++     N L          +  K   NT      V +PPEL V     + IS++ 
Sbjct: 793  LLKGRRMFVVQNYLQRCRQ-----QKEKELSNTT-----VELPPELCVIFMSPISISIIY 842

Query: 1024 SLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELL 1083
            S  L+PS+M R+ESL+LA  L+     + +   IP+  +LEA+TT  C E F +E LE L
Sbjct: 843  SFSLIPSIMHRIESLLLAVNLKNIHLNYCKQNDIPTFKVLEAITTKHCQEGFHLESLETL 902

Query: 1084 GDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRR 1143
            GDS LKYA S  LF T+   HEG LS ++   + N++L KLG DRKL G+IR+ +FDP++
Sbjct: 903  GDSFLKYAASQQLFKTFQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNESFDPKK 962

Query: 1144 WVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEA 1203
            W+  G  S   V  E            +  +   K+ V +      R + SK IAD  EA
Sbjct: 963  WIIAGDQSRSHVFGE------------ELLSSTRKIYVSE-----RRKLKSKRIADVVEA 1005

Query: 1204 LIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGY 1263
            LIGA+   GG  AAL  M+WLGI+ D           +      + R   +  +ES + Y
Sbjct: 1006 LIGAFLSTGGETAALIFMRWLGINVDFV-----KVPYKRDFPVILKRHVNVSYLESILNY 1060

Query: 1264 EFTVKFLLQEAITHASVQ-----------EFY---------------------------- 1284
             F    LL E++TH S             EF                             
Sbjct: 1061 SFRDPSLLVESLTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPGMSPGLLTDL 1120

Query: 1285 --------CYQN------LYKHLQHCSTLLLSQITEYVKSFPK-PGETTDSGPSMKA-PK 1328
                    CY        L++H+ H S  L   I   V  F K P E+T    S  + PK
Sbjct: 1121 RSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGBFDKLPXESTFGWESESSFPK 1180

Query: 1329 ALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFV 1388
             LGD++ES+ GA+L+D+  N + V++  +P+L P++TP+ ++L P REL ELC    Y +
Sbjct: 1181 VLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARELXELCQKEHYXI 1240

Query: 1389 K 1389
            K
Sbjct: 1241 K 1241



 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 96/180 (53%), Gaps = 46/180 (25%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI-KSNGFKKLIIFLAPTVHL 105
           R YQ++  E A ++NTI  LETG+GKT+IA+ML++  A  + K + F  + +FL P V L
Sbjct: 25  RSYQIEALEKAIKQNTIVFLETGSGKTLIAIMLLRYYAHLLRKPSPF--IAVFLVPKVVL 82

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V Q                                      VLVMTP ILL+ LR +F  
Sbjct: 83  VPQ--------------------------------------VLVMTPAILLNGLRHSFFK 104

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYH-----KSDNKPKVFGMTASPVVRKGVSSAM 220
           LD++  ++ DECHHA G  PY  IMKEFYH      + N P++FGMTASP+  KGV+  M
Sbjct: 105 LDMIKVLIFDECHHARGKDPYACIMKEFYHXQVRSNNSNLPRIFGMTASPIKTKGVNDLM 164


>gi|110520367|gb|ABG74922.1| Dicer-like 1b protein [Physcomitrella patens]
          Length = 1695

 Score =  385 bits (989), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 282/863 (32%), Positives = 427/863 (49%), Gaps = 99/863 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQL+V   AK + T+A L+TGAGKT+IA++L+K   Q ++    + L +FL P V LV
Sbjct: 24  RTYQLEVLAQAKVKITVAFLDTGAGKTLIAILLMKHKHQVLREYDKRMLALFLVPKVPLV 83

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
           +QQ DVIR  T F V  Y G  G   WD++ WQ+E +  DV VMT QILL+ LR + + +
Sbjct: 84  YQQADVIRNGTKFSVGHYCGEMGSRFWDARGWQREFDTKDVFVMTAQILLNILRHSIVKM 143

Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
           + +  +++DECHHA   HPY+ +M EFY  +  D +P VFGM ASPV  KGVS+  DC  
Sbjct: 144 EAIHLLILDECHHAVKKHPYSLVMSEFYLMTPKDKRPCVFGMIASPVNLKGVSNQEDCAI 203

Query: 225 QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
           +I  LES LDS V TI D+ E+E  VP   E+   YD+     S  K + ++  +   A+
Sbjct: 204 EIRNLESKLDSIVCTIRDRKELEKHVPLPSETMILYDKPALLFSLRKERKQMEATVEKAA 263

Query: 285 LSKLQGSQLNCYKDMDDKHK--------TLRKQLSDYHAK-------ILYCLDELGLICA 329
            + ++ S+  C    D   K           +  SD  A        I Y LDELG  CA
Sbjct: 264 NASVRRSKWKCMGARDAGAKEELQLVYSVAERTESDGAASLSQKLRAITYALDELGQWCA 323

Query: 330 YEAVKICLEKVLKAQEECEIYRQSSLQC-KYFLEEVLHVI------GSA----------- 371
           Y   K+ L  +     +  +  Q  ++  K +L++V  ++      G+A           
Sbjct: 324 Y---KVSLGYLTSLHNDERVNHQLDVKFQKLYLKKVCTLLRCSLREGAAGWEVPAEIGES 380

Query: 372 --------LPLADKIFLDF-----GFD--YSKAVDLGYISTKLHELLQLFLSFGKSTQVL 416
                   + + +  FL         D     AV  G ++ K+  L+++ + +  +    
Sbjct: 381 EGDKAQDPMDVEEGSFLTLVSVGEHLDEILGAAVADGKVTPKVQSLIKVLIGYQHTDDFR 440

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
            IIFVER+     + R ++  P L  +  A L G   + D  T ++Q E +  FR G+V 
Sbjct: 441 AIIFVERVWVGVTLCRSLQSCPSLKFVKCASLIGHNNNQDMPTRQMQ-ETISKFRDGRVT 499

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           LL AT V  EG+ +  C+ VIRFDL KTV +YIQSRGRAR+  S +ILMLERGNL+    
Sbjct: 500 LLVATSVAAEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMLERGNLQHEAF 559

Query: 537 LFDIIRSERSVTDTALSRDP-----EACFLKACTYVKTKSYIVESTGASVTTDSSVNLIH 591
             +   SE ++   A+ R       E   L +    + + Y V +TGA V+ +S+V LIH
Sbjct: 560 FRNAKNSEETLRKEAIERTDLGEKRENAILASIDIGEGEIYQVPATGAVVSMNSAVGLIH 619

Query: 592 RYCEMLPSDKYYTPKPIFKYKSAEEA-----YECELTLPSNAPFQTIVGPTSRNKNLSKQ 646
            YC  LPSD+Y   +P F     E+      Y C L LP +APF+ + GP   +   ++Q
Sbjct: 620 FYCSQLPSDRYSLLRPEFIMNKIEDQRGAIRYSCRLQLPCHAPFEAVEGPECNSMRGAQQ 679

Query: 647 LVCLEACEKLHQVGALNDHLLPSVEEPSENNLI--SKKNESLPGAGTTKRKELHGTTPIR 704
              LE  +K+H++GA  D LL +     E   +  S++ ESLP  GT++ +E +      
Sbjct: 680 SCVLEGLQKMHEMGAFTDMLLSNKGSREEAAKLEGSEEGESLP--GTSRHREYYPEGIAD 737

Query: 705 ALSG-----------RWGEKCGVILHAYK---FNFAC-SIVTEIYSGFVLLIESELDNDV 749
            L G           + G K  V ++  K     F+  S++TE  S F LL+  +L + V
Sbjct: 738 ILKGDRIVAEKDSDTKEGSKVLVFMYTVKCENVGFSRDSLLTET-SDFTLLVGQQLHDQV 796

Query: 750 GNFELELYLVSKTVKATVS-SSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSR 808
               + L++ + T+  T+S     +     Q+++ K F     + +   L V  + + +R
Sbjct: 797 LTMTINLFVANPTLLITMSWKKRDLDCSNSQLTELKSFHVRLMSIV---LDVNVEPATTR 853

Query: 809 EFFLKRETNSLWSPSYMYLLLPL 831
                      W P+  YL  P+
Sbjct: 854 -----------WDPAKAYLFAPV 865



 Score =  257 bits (656), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 219/783 (27%), Positives = 340/783 (43%), Gaps = 159/783 (20%)

Query: 897  LANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPF---DGNTDD-DSKTFVNYFS 952
            + +G V+ + L   +V A+H+G+   +  +  + +A+S F   DG     +  ++ +Y+ 
Sbjct: 977  IVDGFVEVEVLVGRIVTAVHSGKRLYVDSVRFDMTADSSFPQKDGYLGPLEYTSYADYYK 1036

Query: 953  EKYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL 1011
            +KYG+ L+   QPLLR +   +  NLL   F   G S       ++      +V +PPEL
Sbjct: 1037 QKYGVELVCKKQPLLRGRGVSHCKNLLSPRFETSGDS-------LDALDKTYYVMLPPEL 1089

Query: 1012 LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGC 1071
             +   +P S+V+    LPSVM+R+ES++LA QL+ +I+     + I +S +  ALT    
Sbjct: 1090 CLIHPLPGSLVRGAQRLPSVMRRVESMLLAIQLKHQID-----YPIAASKV--ALTAASG 1142

Query: 1072 CESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQ 1131
             E+FS ER ELL D+ L++ VS  LFL +P KHEGQL+  R   V NS L++   ++ LQ
Sbjct: 1143 QETFSYERAELLSDAYLEWVVSHRLFLKFPSKHEGQLTRMRQKIVSNSVLYQHALEKGLQ 1202

Query: 1132 GYIRDSAFDPRRWVAPGQLSLRPVPCECGVDT-----------------LEVPLDGKFFT 1174
             YI+   F P RW APG           G D+                  E  +  +  T
Sbjct: 1203 SYIQADRFAPSRWAAPGVPPAFDEDLRDGDDSDKESKPEVEREVVEIVGEEGEIVKELNT 1262

Query: 1175 QDTKVVVGK-PCDMG-HRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEV 1232
            +   +  G+   D G +R + SKT+AD  E  +G YYV GG  AA + M W+GI  + + 
Sbjct: 1263 ESENMEDGEIEGDSGSYRVLSSKTLADVVEVFMGMYYVEGGGEAATHFMNWVGIPVEFDD 1322

Query: 1233 SLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE---------- 1282
               D       +   V R  +   ++  +G+EF  + LL EAITHAS             
Sbjct: 1323 VETDLATGGCQVPETVMRSIDFSSLQKNVGHEFRERSLLVEAITHASRPSLGVPCYQRLE 1382

Query: 1283 ---------------FYCYQNL---------------------------YKHLQHCSTLL 1300
                           F+ Y NL                           + HL+H ST L
Sbjct: 1383 FVGDAVLDHLITRYLFFKYTNLPPGRLTDLRAAAVNNENFARVAVKHSYHLHLRHGSTAL 1442

Query: 1301 LSQITEYVKS----FPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIF 1356
             +QI  +V        KPG  +      KAPK LGD+ ESI GA+ +D +L+  +VW++F
Sbjct: 1443 ETQIRNFVNDIHSELDKPGVNSFGLGDFKAPKVLGDIFESIAGALFLDARLDTHQVWKVF 1502

Query: 1357 KPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEG 1416
            +P+L P+V+P+ L + P+R L E C      ++   +    +   E+ +   D + +G  
Sbjct: 1503 EPLLQPMVSPETLPIHPVRGLQERCQQEAEGLEYKVSRAESVATVEVYV---DGVQIGST 1559

Query: 1417 QERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKG 1476
            Q   +K A+   A   L KL+  E    K  +  G L                       
Sbjct: 1560 QSAQKKMAQKLGARNALVKLKDKEVIKVKAEAENGDLN---------------------- 1597

Query: 1477 TEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTF----ETTE 1532
                  AG S K  +                   R ++  LC    WPMP +    E+  
Sbjct: 1598 ------AGKSSKNGHTNFT---------------RKTINDLCLKRQWPMPQYKCVLESGP 1636

Query: 1533 SKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHE 1592
            + ++   +    L    G++                EC G+P A  K + DSAAL++L  
Sbjct: 1637 AHAKKFTLSVRVLTTTDGWTE---------------ECVGEPMASVKKAKDSAALVLLAT 1681

Query: 1593 LER 1595
            L R
Sbjct: 1682 LRR 1684


>gi|41469333|gb|AAS07189.1| putative ribonuclease III, 5'-partial (with alternative splicing)
            [Oryza sativa Japonica Group]
          Length = 1017

 Score =  381 bits (979), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 304/1035 (29%), Positives = 480/1035 (46%), Gaps = 159/1035 (15%)

Query: 417  CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
            CI+FVER+I + V+E  +  +  ++   V ++ GS   + + + K   E++ESFR GKV+
Sbjct: 7    CIVFVERVITSIVLEHLLSSIHQMSGWNVKHMAGSRPGLLSQSRKNHTEIVESFRKGKVH 66

Query: 477  LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
            ++ AT ++EEG+ VP+C+ VIRFD   TV S+IQSRGRAR  NS ++L++ RG+++ +  
Sbjct: 67   IIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQSRGRARMENSDYLLLVGRGDVEAQTN 126

Query: 537  LFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEM 596
                + S + + + +L     +C     T  +   Y VEST A VT +SSV LIH +C  
Sbjct: 127  AEKFLASGQIMREESLRLGSISCQPLENTLCEDTYYRVESTRAIVTLNSSVPLIHFFCSK 186

Query: 597  LPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKL 656
            LPSD+Y+ P P F    A     C L LP ++P QT+        ++ K+ VCL+AC++L
Sbjct: 187  LPSDEYFNPLPRFDIDKASGT--CTLHLPKSSPVQTV--NVEGEGSILKETVCLKACQEL 242

Query: 657  HQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSG-RWGEKCG 715
            H +GAL D LLP ++ P +           P      + E     P   +   R   + G
Sbjct: 243  HAIGALTDSLLPELDVPCDEE---------PDIVVENKIEQPSYFPEEFVDNWRSFSRLG 293

Query: 716  VILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHL 775
             I + YK +      T   +  +L ++ +L +D  +   +L         T+   G +HL
Sbjct: 294  -IYYCYKISLEGCPKTASPTDILLALKCDLGSDFTSSSFKLPGGQDNASVTMKYVGIIHL 352

Query: 776  DADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSP-SYMYLLLPLEIV 834
            + +Q+  A+ FQ    + L G   ++  S+G + F      + +  P   +YLLLPL   
Sbjct: 353  NQEQVIIARRFQTTILSFLIGDDHLEV-SNGIKYF------HEMQVPIGVVYLLLPLV-- 403

Query: 835  NTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDV 894
                  S RI+W  +              F  +     N  + + C +      C   D+
Sbjct: 404  ------SGRIDWCSMK-------------FSSSPIYEANNKHMTHCHS------CKDIDL 438

Query: 895  IHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNT-----DDDSKTFVN 949
            +   +G      LK+ +V   H    Y I   ++        D N+     D    T+ +
Sbjct: 439  LQTKDGPFCRCILKNSIVCTPHNNIFYVISGFLD-------LDANSCLPQHDGTVVTYKD 491

Query: 950  YFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPP 1009
            YF  ++G+ L    QPLL    + + H  + NF     S K  + G      +  V +PP
Sbjct: 492  YFKTRHGLTLTFENQPLL----AGSKHVKVRNFLHNCYSKKEKEPG-----DRYSVELPP 542

Query: 1010 ELLVRVDVPISV--VKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT 1067
            EL   +  P+S   +     +PS+M R++ ++L+ +L+ ++    + F +P   ILEALT
Sbjct: 543  ELCRIIMSPVSANNLHIFSYVPSIMFRIQCMLLSVKLKVQLGPTVQQFDVPVLKILEALT 602

Query: 1068 TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTD 1127
            T  C E FS E LE LGDS LKY  + HLF  Y  +HEG L+  +   + N+ L +L   
Sbjct: 603  TKKCQEEFSQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALCQLACS 662

Query: 1128 RKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM 1187
              L GYI    F+PR W+         +PC   +D  E          + K+    P  M
Sbjct: 663  SNLVGYIHAEEFNPRDWI---------IPC---LDYDE--------RDNKKISFLAPNGM 702

Query: 1188 -GHRWMG--SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASL 1244
               R M   SK IAD  EALIGAY    G  AA  +MK LG++ +    +  +       
Sbjct: 703  YSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGMNIEFHTEIPVERKISMKA 762

Query: 1245 RSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ----------------------- 1281
              ++     ++ +E  +GY+F    LL EA+TH S Q                       
Sbjct: 763  EEFI----NVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLF 818

Query: 1282 -EFY-----------------------CYQN------LYKHLQHCSTLLLSQITEYV--- 1308
             E+Y                       CY +      L KH+ H S+ L  +++ Y+   
Sbjct: 819  TEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEF 878

Query: 1309 -KSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPD 1367
             +SF  P    ++G  +  PK LGD++ESI GA+ +D+K + + VWR  K +L P+ TP+
Sbjct: 879  GQSFTGPSYGWEAGIGL--PKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPE 936

Query: 1368 KLELPPLRELIELCD 1382
             +E  P++ L E CD
Sbjct: 937  TIEPDPVKGLQEFCD 951


>gi|302819687|ref|XP_002991513.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii]
 gi|300140715|gb|EFJ07435.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii]
          Length = 850

 Score =  371 bits (953), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 249/686 (36%), Positives = 366/686 (53%), Gaps = 67/686 (9%)

Query: 443  LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
            L+   L       DA  P  Q+EVL+SF GGK+NLL AT V EEG+ V  C  VIRFD+ 
Sbjct: 6    LSPKVLMTGVRDTDARNPTQQQEVLDSFAGGKLNLLIATSVAEEGLDVQACCGVIRFDVC 65

Query: 503  KTVSSYIQSRGRARQH-NSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFL 561
            +T+ S++QSRGRAR   +S ++ +LE GN++Q N    +  SER V D  + R+      
Sbjct: 66   QTLQSHVQSRGRARNRLSSTYVWLLETGNVEQLNLFNQLCTSERVVEDQVIFRNYMDITR 125

Query: 562  KACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECE 621
            +A      + + VES GA  ++  SV+ IH YC  L  D+YY  KP F +K   +++ C 
Sbjct: 126  EAPPEGDLEFFRVES-GACKSSQDSVSFIHEYCARL-GDRYYNAKPKFSFK---DSFVCT 180

Query: 622  LTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALN-DHLLPSVEEPSENNLIS 680
            +  P NAP +++ GP  R + L+K+  CL+AC KL+ +G +  D L P V++  E +   
Sbjct: 181  VEFPPNAPLRSVEGPLRRTEQLAKKAACLQACRKLYDMGEVRPDTLCPDVDDFDEEDQSM 240

Query: 681  KKNESLPGAGTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIV-TEIYSGFV 738
            +KNES       KRKE+  T       G W   +  V L  YK  F      +  YS F 
Sbjct: 241  RKNES------GKRKEIFSTAKPLIFEGSWVFNESEVQLQFYKICFVIEPPESRTYSNFG 294

Query: 739  LLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKL 798
             L+   +D +V + E+ L+  ++ V A V   G + LDA+Q+  AK +QEL  NG F +L
Sbjct: 295  FLVNCVIDAEVTDSEVTLFSRNRVVNARVHRVGPIQLDANQVKAAKAYQELLLNGAFNRL 354

Query: 799  FVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEF 858
               ++ SGS +         LW+ S  +LLLP+       D +  I+W+ ++  A V   
Sbjct: 355  ---ARCSGSPQ-------EILWNKSQAFLLLPVH------DDNDSIDWTSVHATAGVYRT 398

Query: 859  IKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTG 918
            +          C +N   SSP          H  D++  ANG V +  L+DMVV  +H G
Sbjct: 399  L----------C-SNFSPSSPIDGDGVGEKTHA-DMLCTANGYVHSSALQDMVVATVHNG 446

Query: 919  RIYSIVEIVNNSSAES--PFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPH 976
            R++ +  ++ N +A S  P  G       T+++Y+ +KY   L  P QPLL+ K +H  H
Sbjct: 447  RLFCVTGVLENFTAASLLPKRGF------TYIDYYKDKYQRTLRLPDQPLLKAKPTHAFH 500

Query: 977  NLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLE 1036
            NLL+   +  GS          ++ +  V +PPEL + +++   +++SLY +PS + +  
Sbjct: 501  NLLIRPKEDHGS----------RQEESFVELPPELCLCLEIKSGLIRSLYFVPSFLHQFT 550

Query: 1037 SLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHL 1096
            S + A QLR  +        IP++ ILEA+T+  C E FS E LELLGDS LKY V+  L
Sbjct: 551  STVCAIQLRSPLWP-----WIPAAKILEAITSKKCHEEFSYESLELLGDSFLKYVVTQKL 605

Query: 1097 FLTYPKKHEGQLSARR-SWAVCNSTL 1121
            FL Y KKHEGQLSARR ++A  NS L
Sbjct: 606  FLVYDKKHEGQLSARRNTYATKNSIL 631



 Score =  114 bits (285), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 115/209 (55%), Gaps = 16/209 (7%)

Query: 1245 RSYVPRINE---IKDIESKIGYEFTVKFLLQEAITHASVQE-FYCYQNLYKHLQHCSTLL 1300
            R+ +P I++   ++ +E K+ Y+F  + LL EAITHAS      CYQ       H S  L
Sbjct: 637  RACLPLIHQNASLESLEHKLQYKFQNRSLLVEAITHASQPNCLLCYQ-------HGSVEL 689

Query: 1301 LSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
              +I ++V++  K          + +PK LGDLLESI GA+ +DT  +L+++WR+  P+L
Sbjct: 690  DCEIRKFVQNV-KEKPDASCFDDLSSPKVLGDLLESITGAIFVDTNFDLEKLWRVVLPLL 748

Query: 1361 SPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERS 1420
            SP+VTP  L   P+R L+ELC   G  V      + E    E+R+   +  LV   QE+ 
Sbjct: 749  SPLVTPATLRFHPVRILMELCARKGMKVS---FFRTEATTTEVRVTFGEESLVETSQEKP 805

Query: 1421 RKAAKGKAASQLLKKL-EVCEKRISKGAS 1448
            RK+AK  AA ++L  L E  EK +   AS
Sbjct: 806  RKSAKIDAALKMLASLQEKVEKEMKMLAS 834


>gi|168039663|ref|XP_001772316.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676303|gb|EDQ62787.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1275

 Score =  360 bits (925), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 303/1037 (29%), Positives = 481/1037 (46%), Gaps = 188/1037 (18%)

Query: 522  FILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASV 581
            ++ +  RGN +Q  +L   + +E S+ +  LSR   A  + A      +++ VESTGA++
Sbjct: 9    YMSLFSRGNNEQSQRLEQFLLTEESMKEEVLSRIKNAEDVGAPETSTIETFRVESTGATM 68

Query: 582  TTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNK 641
            +T  SV+L+H+YC  L  D +YTP P F Y       +C + LP++A  Q++ G    ++
Sbjct: 69   STLCSVSLLHQYCARLAHDSFYTPTPQFSYSEDGSGVKCTIKLPTDALVQSVEGRPVSSQ 128

Query: 642  NLSKQLVCLEACEKLHQVGALNDHLL-PSVEEPSENNLISKKNESLPGAGTTKRKELHGT 700
              +K++ CL ACE+L+  GAL + LL  S E     + I+ ++ S     TT R  L   
Sbjct: 129  ADAKRVACLIACERLYDAGALTELLLLKSKENAYSLDAIAPESNS-----TTGRDPLPSR 183

Query: 701  TPI--RALSGRWGEKCGVI-LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELY 757
            + I   A SG WG     + LHAY  +F  +     Y  F L +E+++  + G+ E+EL 
Sbjct: 184  SIIVPDAFSGTWGSGLNSVELHAYAISFVATPNDRAYVNFGLFLEADMGPEAGSIEVELQ 243

Query: 758  LVSKT-VKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRET 816
            L ++  V A  S  G +  + DQ+  AK FQE  F+ +  +          +      E 
Sbjct: 244  LSNRRLVNAKCSPCGTILFEPDQLRNAKSFQERIFSSVLDQ----------KPPVPNIEL 293

Query: 817  NSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGN 876
            +  W+ + +YLLLPL+        S  I+W  I    S V     K +    +  +    
Sbjct: 294  SGEWNSNRLYLLLPLKEKQDALPLS--IDWDCIEDLISDVM----KGYNTLEEVPSEIPR 347

Query: 877  SSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGR--IYSIVEIVNNSSAES 934
            SS               ++ L +G    +++ + ++   HTG+  +Y   E++ + + +S
Sbjct: 348  SS---------------LLRLIDGYFPVEHVTNSLIQTEHTGKRCLYCARELIPDMNGQS 392

Query: 935  PFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKS 994
            P          ++ +Y+ +K+   L    QP+L+ K     +NLL             + 
Sbjct: 393  PMIMKVSK-YNSYSDYYLKKHNRTLNFVEQPMLKAKPLIQVNNLLTQRT------TSERP 445

Query: 995  GMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI-NCH 1051
                +K +  V +P EL  ++   +  ++   + LLPS M RLE L+LA Q R+ + + H
Sbjct: 446  AAEEQKTESLVELPLELCKIMVKGLSCALTNGISLLPSFMHRLEGLLLAVQFRKSLPSPH 505

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            S    +P++L+LEA+TT  C ESFS+E LELLGD+ L+ +VS  LFL + +  EG+LS R
Sbjct: 506  SSP--VPANLMLEAITTSKCQESFSLEGLELLGDAFLEVSVSERLFLLHNRLDEGELSKR 563

Query: 1112 RSWAVCNSTLHKLGTDRKL-------------------------QGYIRDSAFDPRRWVA 1146
            R+  +CN  L +LG +R +                         + YIRD+ F P+ W  
Sbjct: 564  RTNLICNKMLERLGRERGIMVSKSCRDTTRSTYKQFEIMINLVSENYIRDTQFSPKEWAT 623

Query: 1147 PGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
            PG+  +R   C+        PL G                        KTIAD  EALIG
Sbjct: 624  PGR--VRETQCKLP------PLQG------------------------KTIADVFEALIG 651

Query: 1207 AYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFT 1266
            A+Y+ GG+ AA  MM WLG +  +  S+ ++  TR   +  +    ++ ++E  + Y+F 
Sbjct: 652  AHYIHGGVEAAQAMMGWLGCEVGVSSSIREEARTRVHGQLELLSEAKVSELEILLNYKFQ 711

Query: 1267 VKFLLQEAITHASVQEFY--CYQ------------------------------------- 1287
             K LL EA+THAS +     CYQ                                     
Sbjct: 712  NKGLLVEALTHASCRRHSGDCYQRLEFLGDAVLDFLITKHFYANSANLKRDPGLLTDLRS 771

Query: 1288 ---------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDS------GPSMKA 1326
                           NL+ +L H S+ L +++ +YV      G TTD+      G S   
Sbjct: 772  AAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVH-----GSTTDAQCHGWNGDS--G 824

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGY 1386
            PK L DL+ES+ GAV +D+   LD VW +FK +L P+VTP  L L P+REL ELC +   
Sbjct: 825  PKVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPATLRLEPIRELWELCQT-EK 883

Query: 1387 FVKENCTLKGEMV---HAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL-----EV 1438
            F + N   K E +      + ++LKD  + G G++   K+A+  AA Q L+ L     E 
Sbjct: 884  FGEPNYKKKREAMGDFDMTVTVELKDETITGVGRKPDEKSARKVAAIQALETLKTLGYEH 943

Query: 1439 CEKRISKGASNTGKLGD 1455
              +R+ + A    K  D
Sbjct: 944  GSRRLERAALYARKFSD 960


>gi|115459356|ref|NP_001053278.1| Os04g0509300 [Oryza sativa Japonica Group]
 gi|113564849|dbj|BAF15192.1| Os04g0509300, partial [Oryza sativa Japonica Group]
          Length = 1090

 Score =  355 bits (910), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 290/931 (31%), Positives = 430/931 (46%), Gaps = 116/931 (12%)

Query: 572  YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQ 631
            Y V++TGAS++T  SV+L+H YC+ LP D ++TP P+F Y    E   C L LP NA F+
Sbjct: 4    YQVDNTGASISTACSVSLLHCYCDNLPRDMFFTPSPVFFYIDGIEGIICRLILPPNAAFR 63

Query: 632  TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGA-- 689
               G    +K+ +K+  CL+AC KLH++GAL D LLP     S  N +S  N S      
Sbjct: 64   QADGQPCLSKDEAKRDACLKACVKLHKLGALTDFLLPG--PGSRKNKVSVTNNSSNNKVE 121

Query: 690  GTTKRKELHGTTPIRALSGRWGEKCGVI--LHAYKFNFACSIVTEIYSGFVLLIESELDN 747
              + R+ELH    I A+    G K   +  LH Y   F        Y  F L + + L  
Sbjct: 122  DDSLREELHEML-IPAVLKPSGLKLDSLSNLHFYYVKFIPIPEDRRYQMFGLFVINPLPV 180

Query: 748  DVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG 806
            +    +++L+L   + VKA +   G++  + ++M  A  FQE+       K+ +      
Sbjct: 181  EAETLQVDLHLARGRIVKAGIKHLGKIAFEKEKMMLAHKFQEMCL-----KILLDRSEFT 235

Query: 807  SREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLG 866
            S    L  +  +L   S  YLLLP++    +GD  + I+W  +  C              
Sbjct: 236  SPHVKLGNDV-TLEINSTFYLLLPIK-QKCYGD-RFMIDWPAVERCL------------- 279

Query: 867  AAQCNNNGGNSSPCRTSPCKTGCHG----KDVIHLANGSVDAKNLKDMVVLAIHTGRIYS 922
                      SSP    P     H      + + L +G     ++   VV + H    + 
Sbjct: 280  ----------SSPIFKDPIDVSVHASYSSNESLRLLDGIFSKTDVVGSVVFSPHNNIFFF 329

Query: 923  IVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNF 982
            +  I++  +A S   G       T+  +F E++ I L HP QPLL+ KQ  N  NLL N 
Sbjct: 330  VDGILDEINAWSEHSG------ATYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHNR 383

Query: 983  NDGGGSGKGSKSGMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLML 1040
                   +G +        +  V +PPEL  L  +     +  SL LLPS+M RLE+L++
Sbjct: 384  LPETTESEGREL------LEHFVELPPELCSLKVIGFSKDMGSSLSLLPSLMYRLENLLV 437

Query: 1041 ASQLRE-EINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            A +L++  ++       I +S ILEALTT  C E  S+ER E+LGD+ LKY V  H F+T
Sbjct: 438  AIELKDVMLSSFPEASQISASGILEALTTEKCLERISLERFEVLGDAFLKYVVGRHKFIT 497

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCEC 1159
            Y    EGQL+ RRS  V NS L++L   +KLQ YIRD  F+P ++ APG    RP    C
Sbjct: 498  YEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQQFEPTQFFAPG----RPCKVVC 553

Query: 1160 GVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALY 1219
              D +EV L       D +      C   H W+  K IAD  E+LIGA+ V GG  AA  
Sbjct: 554  NTD-VEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVESLIGAFLVEGGFKAAFA 612

Query: 1220 MMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
             + W+GID D     +   +  +S+   +    +I  +E  IGY+F  K LL +A  H S
Sbjct: 613  FLHWIGIDVDFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPS 672

Query: 1280 VQEFY--CYQNL------------------------------------------------ 1289
              +    CYQ L                                                
Sbjct: 673  FSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEK 732

Query: 1290 --YKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKL 1347
              +KHL   S  L S I+++           D       PKALGD++ES +GAVL+D+  
Sbjct: 733  SIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGF 792

Query: 1348 NLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGE-MVHAELRLQ 1406
            NL+ VW++   +L P++T   +   P+REL ELC   G+ +     +K +   H ++ + 
Sbjct: 793  NLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMKADGEYHVKVEVN 852

Query: 1407 LKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
            +K  +++     R+ KAA+  AA + L KL+
Sbjct: 853  IKSKIIICTAANRNSKAARKFAAQETLSKLK 883


>gi|50399920|gb|AAT76308.1| putative RNA helicase/RNAseIII protein, C-terminus truncated [Oryza
           sativa Japonica Group]
          Length = 585

 Score =  333 bits (853), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 203/578 (35%), Positives = 319/578 (55%), Gaps = 49/578 (8%)

Query: 45  IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           + R YQL+  E A R NT+A LETG+GKT+IAVML++  A  ++    ++  +FL PTV 
Sbjct: 33  MARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVV 92

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           LV QQ  V+  HTD  V+++ G  GVD WD+  W+ ++   +VLVMTPQILLD LR +F 
Sbjct: 93  LVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFF 152

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYH------KSDNKPKVFGMTASPVVRKGVSS 218
            L  +  ++ DECHHA GN PY  I KEFYH       SD  P++FGM+AS +  K ++ 
Sbjct: 153 RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKDLN- 211

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL---- 274
             +   QISE+E+ ++S+V+T++ ++ +  ++P A      +D S    S+L   +    
Sbjct: 212 PHNYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVDFDDSNI-SSELHANILSCL 270

Query: 275 -EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
             ++    +A   KL GS L          +  ++++S  H   +YCL  LG+  A +A 
Sbjct: 271 NRLNKKHIEALDRKLHGSSL----------ENAKQRISKLHHTFVYCLYNLGVWLAAKAA 320

Query: 334 KICLEKVLKAQEECEIYRQSSLQCKYFLEEVL--HVIGSALPLADKI------FLD---F 382
                       E + Y ++SL    F  E L  +V G     ++++      FL     
Sbjct: 321 ------------EVQSYEENSLS---FWGETLDKNVEGFIRNYSEEVHRELSCFLKNGHI 365

Query: 383 GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
           G  +      G ++ K+H L++  L +     + CI+FVER+I + V+E  +  +  ++ 
Sbjct: 366 GEKFPADSQDGILTPKVHCLIRTLLQYRHMQDLRCIVFVERVITSIVLEHLLSSIHQMSG 425

Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
             V ++ GS   + + + K   E++ESFR GKV+++ AT ++EEG+ VP+C+ VIRFD  
Sbjct: 426 WNVKHMAGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPS 485

Query: 503 KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLK 562
            TV S+IQSRGRAR  NS ++L++ RG+++ +      + S + + + +L     +C   
Sbjct: 486 ATVCSFIQSRGRARMENSDYLLLVGRGDVEAQTNAEKFLASGQIMREESLRLGSISCQPL 545

Query: 563 ACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSD 600
             T  +   Y VEST A VT +SSV LIH +C  LPSD
Sbjct: 546 ENTLCEDTYYRVESTRAIVTLNSSVPLIHFFCSKLPSD 583


>gi|215694849|dbj|BAG90040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1058

 Score =  322 bits (825), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 274/901 (30%), Positives = 407/901 (45%), Gaps = 116/901 (12%)

Query: 602  YYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGA 661
            ++TP P+F Y    E   C L LP NA F+   G    +K+ +K+  CL+AC KLH++GA
Sbjct: 2    FFTPSPVFFYIDGIEGIICRLILPPNAAFRQADGQPCLSKDEAKRDACLKACVKLHKLGA 61

Query: 662  LNDHLLPSVEEPSENNLISKKNESLPGA--GTTKRKELHGTTPIRALSGRWGEKCGVI-- 717
            L D LLP     S  N +S  N S        + R+ELH    I A+    G K   +  
Sbjct: 62   LTDFLLPG--PGSRKNKVSVTNNSSNNKVEDDSLREELHEML-IPAVLKPSGLKLDSLSN 118

Query: 718  LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV-SKTVKATVSSSGQVHLD 776
            LH Y   F        Y  F L + + L  +    +++L+L   + VKA +   G++  +
Sbjct: 119  LHFYYVKFIPIPEDRRYQMFGLFVINPLPVEAETLQVDLHLARGRIVKAGIKHLGKIAFE 178

Query: 777  ADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNT 836
             ++M  A  FQE+       K+ +      S    L  +  +L   S  YLLLP++    
Sbjct: 179  KEKMMLAHKFQEMCL-----KILLDRSEFTSPHVKLGNDV-TLEINSTFYLLLPIK-QKC 231

Query: 837  FGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHG----K 892
            +GD  + I+W  +  C S                       SP    P     H      
Sbjct: 232  YGD-RFMIDWPAVERCLS-----------------------SPIFKDPIDVSVHASYSSN 267

Query: 893  DVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFS 952
            + + L +G     ++   VV + H    + +  I++  +A S   G       T+  +F 
Sbjct: 268  ESLRLLDGIFSKTDVVGSVVFSPHNNIFFFVDGILDEINAWSEHSG------ATYAEHFK 321

Query: 953  EKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL- 1011
            E++ I L HP QPLL+ KQ  N  NLL N        +G +        +  V +PPEL 
Sbjct: 322  ERFRIELSHPEQPLLKAKQIFNLRNLLHNRLPETTESEGREL------LEHFVELPPELC 375

Query: 1012 -LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLRE-EINCHSRNFHIPSSLILEALTTL 1069
             L  +     +  SL LLPS+M RLE+L++A +L++  ++       I +S ILEALTT 
Sbjct: 376  SLKVIGFSKDMGSSLSLLPSLMYRLENLLVAIELKDVMLSSFPEASQISASGILEALTTE 435

Query: 1070 GCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRK 1129
             C E  S+ER E+LGD+ LKY V  H F+TY    EGQL+ RRS  V NS L++L   +K
Sbjct: 436  KCLERISLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKK 495

Query: 1130 LQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGH 1189
            LQ YIRD  F+P ++ APG    RP    C  D +EV L       D +      C   H
Sbjct: 496  LQVYIRDQQFEPTQFFAPG----RPCKVVCNTD-VEVRLHQMDIHPDNRENCNLRCTRSH 550

Query: 1190 RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP 1249
             W+  K IAD  E+LIGA+ V GG  AA   + W+GID D     +   +  +S+   + 
Sbjct: 551  HWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDVDFNNPALYRVLDSSSINLSLM 610

Query: 1250 RINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY--CYQNL------------------ 1289
               +I  +E  IGY+F  K LL +A  H S  +    CYQ L                  
Sbjct: 611  DYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYS 670

Query: 1290 --------------------------------YKHLQHCSTLLLSQITEYVKSFPKPGET 1317
                                            +KHL   S  L S I+++          
Sbjct: 671  TYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSE 730

Query: 1318 TDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLREL 1377
             D       PKALGD++ES +GAVL+D+  NL+ VW++   +L P++T   +   P+REL
Sbjct: 731  KDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMREL 790

Query: 1378 IELCDSLGYFVKENCTLKGE-MVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1436
             ELC   G+ +     +K +   H ++ + +K  +++     R+ KAA+  AA + L KL
Sbjct: 791  RELCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKL 850

Query: 1437 E 1437
            +
Sbjct: 851  K 851


>gi|241896736|emb|CAZ65730.1| dicer-2 protein [Mucor circinelloides f. lusitanicus]
          Length = 1608

 Score =  310 bits (794), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 218/663 (32%), Positives = 323/663 (48%), Gaps = 89/663 (13%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA----QAIKSNGFKKLIIFLAP 101
           PR YQ ++F  A   N IAVL+TG+GKT+I++MLIK +     Q   +    KL  FL  
Sbjct: 96  PREYQYELFTKALEENIIAVLDTGSGKTLISIMLIKQMVLQERQERLTRRETKLAFFLVD 155

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
            V LV QQ  VIR + D  +EE  G   VD W  + W+    +NDV VMT QI LD L  
Sbjct: 156 RVPLVFQQASVIRANCDVNLEEICGEMEVDAWSEKRWKLIFEENDVCVMTAQIFLDTLHH 215

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSA 219
            F+SL+    ++ DECHHAT  HP+  IM+EFY +   +++PK+FGMTASP+      + 
Sbjct: 216 GFISLEKAHLLIFDECHHATKKHPFNLIMREFYDRCPLEHRPKIFGMTASPM-----HAR 270

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQS-KFCGSDLKGKLEVSW 278
              E  +++LE  L ++V+T  +   + + +P  +E    YD + ++  +++  K+    
Sbjct: 271 TTVERSVAQLEKNLHARVYTATNMESLNISIPKPREISIHYDPTPRYEETEMSKKIREKL 330

Query: 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338
                      G    C+    D                   L  LG  C+    K  L 
Sbjct: 331 GSI--------GRYKRCFIITQD------------------ILTSLGPWCSDRMWKSMLS 364

Query: 339 KVLKAQEEC--EIYRQSSLQCKYFLEEVLHVIGS-ALPLADKIFLDFGFDYSKAVDLGYI 395
           ++ +       ++ R + +     L+E    +     P    IF           D    
Sbjct: 365 ELERKMTNMTQDLERDALIDEDLALKETHEYVDPIEFPRNPDIF-----------DQSLF 413

Query: 396 STKLHELLQLF-LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--ST 452
           S K+ EL++L   +  +     CIIFVER   AK ++  +  +  L  +    LTG  ST
Sbjct: 414 SPKVAELIRLLQFTSERIPDFCCIIFVERRHTAKALQTLIASLDRLKDIRCESLTGHGST 473

Query: 453 TSVDA-LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
              D  +T   Q ++++ FR G++NLL AT+V EEG+ +  C+ V RFD   T+ SYIQS
Sbjct: 474 EEGDVQMTFGDQNKIIQKFRSGELNLLIATNVAEEGLDIQPCNVVFRFDFFHTLISYIQS 533

Query: 512 RGRARQHNSQFILMLERGNLKQRNKLFDIIR-------------SERSV----------- 547
           RGRAR+  S+FI++ E  N  Q + L +  R              ER+V           
Sbjct: 534 RGRARKEGSKFIILTEANNAGQEDTLAEFSRLEADMKAFCQTMPEERNVARKYAISMDVD 593

Query: 548 --TDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
             +D     D E  FL         ++IV  TGA++T  ++V LIH+YC  LPSD +   
Sbjct: 594 YDSDEDYISDEEENFL-------ADAFIVPETGATITKQNAVPLIHKYCSSLPSDSFCVL 646

Query: 606 KPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDH 665
           KPIF+     E Y C+L LPSNAPFQ +      +K+L++  V L AC +L ++ AL+ H
Sbjct: 647 KPIFENIVTGEGYICKLILPSNAPFQEMESHVCGSKDLARASVALNACIRLRELDALDKH 706

Query: 666 LLP 668
           LLP
Sbjct: 707 LLP 709



 Score =  146 bits (368), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 144/548 (26%), Positives = 224/548 (40%), Gaps = 131/548 (23%)

Query: 919  RIYSIVEIVNNSSAESPF-DGNTDDDS--KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNP 975
            R Y +  +  + S  SP  DG    ++   +F +Y++EK  +  +   QP+L +K+    
Sbjct: 1019 RRYFVTNVRTDMSPLSPVPDGVKIRETGYASFADYYNEKKFVEELDTSQPMLEVKRLKKV 1078

Query: 976  HNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRL 1035
             N L         GK S++ M   K  M     P    R  +  SV ++  ++PS+M R+
Sbjct: 1079 MNFLY-------PGKPSQAQM---KGPMSTWTVPSFCQRFFMSASVYQATMMIPSIMTRI 1128

Query: 1036 ESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCH 1095
            +S++L  Q  E  +       I  + +LEA TT       + ERLE LGDS+LK+  +  
Sbjct: 1129 DSILLCRQSAERYD-----LPIDDANMLEAYTTPSANMEMNYERLETLGDSLLKFIATIR 1183

Query: 1096 LFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPV 1155
            L++ +P  +EG+L   R   +CN  L++     K   Y+   AF+ R W  PG  S  P 
Sbjct: 1184 LYINFPFSNEGELHHLRIRVICNRALYRSAKRLKFYRYVTSQAFNRRYWRPPGFTS--PA 1241

Query: 1156 PCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLI 1215
              +  +D L+                       +  +  KT+AD  EA +GA Y+  GL 
Sbjct: 1242 DNQETIDGLK-----------------------YHKLSDKTLADIVEASLGAAYLSNGLE 1278

Query: 1216 AALYMMKWLGIDADLEVSLVDD-----------CITRASLRSY----VPRINEIKDIESK 1260
              L+    L I  D E+   DD              RA +R+     +P++ EI      
Sbjct: 1279 GGLHAAIQLQIPFD-EIKTWDDFKPTFEESRKQVPARAEVRALRSLDLPKVTEI------ 1331

Query: 1261 IGYEFTVKFLLQEAITHASVQEFY--CYQN------------------------------ 1288
            +G EF    L+ EA+THAS+      CYQ                               
Sbjct: 1332 VGREFKTPLLIVEALTHASLPNSTSPCYQRLEFLGDAILDFMVIRYLFARYPDADPGIIT 1391

Query: 1289 --------------------LYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSM---- 1324
                                LY+H+ H S  L+  I  +V       ET   G ++    
Sbjct: 1392 DLKDSCVNNHILGIVCIETGLYRHIIHYSGKLIRAIEFFVSEV---EETKARGEAVGEYW 1448

Query: 1325 ---KAPKALGDLLESIVGAVLIDTKLNLDEVWRIFK----PILSPIVTPDKLELPPLREL 1377
                 PK L D++ES++GA  +D    L+ V  +F     PIL+  VTP+ ++  PLR+L
Sbjct: 1449 VDFNIPKVLSDVVESMLGATFVDAGFRLEAVEELFAKWFLPILNNHVTPELIKFHPLRKL 1508

Query: 1378 IELCDSLG 1385
            I      G
Sbjct: 1509 ITDLQRFG 1516


>gi|302766077|ref|XP_002966459.1| hypothetical protein SELMODRAFT_407400 [Selaginella moellendorffii]
 gi|300165879|gb|EFJ32486.1| hypothetical protein SELMODRAFT_407400 [Selaginella moellendorffii]
          Length = 497

 Score =  298 bits (762), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 202/562 (35%), Positives = 284/562 (50%), Gaps = 92/562 (16%)

Query: 61  NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120
           NTI  LETG GKTMIAV+LI+ ++   +    K + +FLAPTV L  QQ +VI  +TD  
Sbjct: 2   NTIVCLETGCGKTMIAVLLIRSLSHLFRKPE-KGICVFLAPTVSLCEQQAEVIERYTDLY 60

Query: 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHA 180
           V  Y G  G    D   W   + K +V VMTP ILLD LR  F + D V  ++ DECHH 
Sbjct: 61  VGTYVG--GTSTMDVHWWTTHLQKQEVFVMTPAILLDNLRHRFFNPDHVELLIFDECHHC 118

Query: 181 TGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKG--------VSSAMDCEGQISELES 231
              HPY  IM EFYHK + K P++ GMTASP+V KG           + DC      LE+
Sbjct: 119 AKGHPYANIMSEFYHKPEAKCPRILGMTASPIVGKGKTWSGPQAFKESFDC------LET 172

Query: 232 TLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGS 291
            L S++ T  D+ E+  F+PS+    + Y        D KGK   +              
Sbjct: 173 MLRSKIITFADE-ELTSFLPSSDMKIKEY------LPDTKGKHRTT-------------- 211

Query: 292 QLNCYKDMDDKHKTL---------RKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLK 342
                 D+D++ + L         R+ ++  +  + YCL ELGL  A +A +I L     
Sbjct: 212 ------DIDNRFENLTREFGLPEERQAVNKIYNTLNYCLFELGLFSARKAAEIMLAGCDG 265

Query: 343 AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHEL 402
              + E           FL  VL++      L +K  LD   D      +  IS+K+  L
Sbjct: 266 KGRDAE---------AAFLRRVLNI------LEEKAILDGTADDQ----IRAISSKVQLL 306

Query: 403 LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKV 462
           L +   +  +  + CI+FVER+IAAKV+   +   P++    VA        +  LT   
Sbjct: 307 LDVLDEYKSAQDLRCIVFVERVIAAKVLTLLLNSRPYVRAQCVA---SHRNKLKGLTLAT 363

Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
           Q+  LE FR GK N++ AT+V EEG+ + +CS VIRF++PKT  S IQSRGRAR+  S +
Sbjct: 364 QRNSLEDFRAGKANVIVATNVAEEGLDIQSCSLVIRFNMPKTERSSIQSRGRARKQGSDY 423

Query: 523 ILMLERGNLKQRNKLFDIIRSER-------SVTDTALSRDPEACFLKACTYVKTKSYIVE 575
           ++++E GNL +   L  I+  E+       SV DT         +     Y++  +Y VE
Sbjct: 424 VILMESGNLNEEKLLHAILEGEKLMHGQLHSVQDT---------YEHQLFYLQKDAYHVE 474

Query: 576 STGASVTTDSSVNLIHRYCEML 597
           STGA V  DSSV+L+H+YC  L
Sbjct: 475 STGAVVNIDSSVSLLHQYCSTL 496


>gi|302800610|ref|XP_002982062.1| hypothetical protein SELMODRAFT_421514 [Selaginella moellendorffii]
 gi|300150078|gb|EFJ16730.1| hypothetical protein SELMODRAFT_421514 [Selaginella moellendorffii]
          Length = 497

 Score =  295 bits (755), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 197/546 (36%), Positives = 283/546 (51%), Gaps = 60/546 (10%)

Query: 61  NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120
           NTI  LETG GKTMIAV+LI+ ++   +    K + +FLAPTV L  QQ +VI  +TD  
Sbjct: 2   NTIVCLETGCGKTMIAVLLIRSLSHLFRKPE-KGICVFLAPTVSLCEQQAEVIERYTDLY 60

Query: 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHA 180
           V  Y G  G    D   W   + K +V VMTP ILLD LR  F + D V  ++ DECHH 
Sbjct: 61  VGTYVG--GTSTMDVHWWTTHLQKQEVFVMTPAILLDNLRHRFFNPDHVELLIFDECHHC 118

Query: 181 TGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVS--------SAMDCEGQISELES 231
              HPY  IM EFYHK + K P++ GMTASP+V KG +         + DC      LE+
Sbjct: 119 AKGHPYANIMSEFYHKPEAKCPRILGMTASPIVGKGKTWSGPQAFKESFDC------LET 172

Query: 232 TLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGS 291
            L S++ T  DK E+  F+PS               SD+K K  +  +K     + +   
Sbjct: 173 MLRSKIITFADK-ELTSFLPS---------------SDMKIKEHLPDTKGKHRTTDIDNR 216

Query: 292 QLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351
             N  ++     +  R+ ++  +  + YCL ELGL  A +A +I L        + E   
Sbjct: 217 FENLTREFRLPEE--RQAVNKIYNTLNYCLFELGLFSARKAAEIMLAGCDGKGRDAE--- 271

Query: 352 QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGK 411
                   FL  VL++      L +K  LD   D      +  IS+K+  LL +   +  
Sbjct: 272 ------AAFLRRVLNI------LEEKAILDGTADDQ----IRAISSKVQLLLDVLDEYKS 315

Query: 412 STQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFR 471
           +  + CI+FVER+IAAKV+   +   P++    VA        +  LT   Q+  LE FR
Sbjct: 316 AQDLRCIVFVERVIAAKVLTLLLNSRPYVRAQCVA---SHRNKLKGLTLATQRNSLEDFR 372

Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNL 531
            GK N++ AT+V EEG+ + +CS VIRF++PKT  S IQSRGRAR+  S +++++E GNL
Sbjct: 373 AGKANVIVATNVAEEGLDIQSCSLVIRFNMPKTERSSIQSRGRARKQGSDYVILMESGNL 432

Query: 532 KQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIH 591
            +   L  I+  E+ + +   +   +  +     Y +  +Y VESTGA V  DSSV+L+H
Sbjct: 433 NEEKLLHAILEGEKLMHEQLHT--VQDTYDHQLFYRQKDAYHVESTGAVVNIDSSVSLLH 490

Query: 592 RYCEML 597
           +YC  L
Sbjct: 491 QYCSTL 496


>gi|449472435|ref|XP_004153593.1| PREDICTED: endoribonuclease Dicer homolog 3-like, partial [Cucumis
           sativus]
          Length = 257

 Score =  292 bits (748), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 147/257 (57%), Positives = 190/257 (73%), Gaps = 4/257 (1%)

Query: 659 VGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKC-GVI 717
           +GALNDHLLPSVEE SE+++  K N S   AG+TKRKELHG T IRALSG W E+  G  
Sbjct: 1   MGALNDHLLPSVEEISESDMGLKSNASTSRAGSTKRKELHGRTAIRALSGTWEEQVEGTT 60

Query: 718 LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDA 777
           L AYKF+F+CS++ E+YSGFVLLIES+L +DV NFELELYL+SK VKA+VS  G+VHLDA
Sbjct: 61  LQAYKFDFSCSVIYEVYSGFVLLIESKLHDDVSNFELELYLLSKMVKASVSFGGEVHLDA 120

Query: 778 DQMSKAKCFQELFFNGLFGKLFVKSKSSG-SREFFLKRETNSLWSPSYMYLLLPLEIVNT 836
           +Q++KAKCFQELFFNGLFG+LF+ SK++G  R+F L+++TN LW  S MYLLLP+++ + 
Sbjct: 121 EQITKAKCFQELFFNGLFGRLFIGSKTTGKKRDFLLQKDTNPLWISSNMYLLLPVDLPDD 180

Query: 837 FGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGG--NSSPCRTSPCKTGCHGKDV 894
                W+I+W  I+ C SVVEF+K+ S L A +    G   +SSP R +  +TG +   V
Sbjct: 181 STHDLWKIHWRAIDSCVSVVEFLKKNSSLDAERNYGAGAISDSSPSRNNSTETGSNAASV 240

Query: 895 IHLANGSVDAKNLKDMV 911
           IH AN  +D  +LKD V
Sbjct: 241 IHFANCVLDVHSLKDRV 257


>gi|242215871|ref|XP_002473747.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727142|gb|EED81071.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1725

 Score =  284 bits (727), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 209/669 (31%), Positives = 325/669 (48%), Gaps = 78/669 (11%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
            +PR YQ ++F  A+R N IA L+TG+GKT I+ +LIK I+   K  G  K+I+FL P V
Sbjct: 12  LLPRRYQEEIFARAQRSNVIAALDTGSGKTYISTLLIKWIS--TKDAGLGKIIVFLVPKV 69

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            LV QQ D I   T   V +Y GA  +D  D   W+ E+   DV VMT QI L+ L  + 
Sbjct: 70  ALVDQQGDFIAKQTPLRVRKYCGATAIDLADRTTWKAELEGADVFVMTAQIFLNLLTHSL 129

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMDC 222
            SLD V  +V DECHH   NH Y  IM+E++   SD +PK+FGMTASP+      +  D 
Sbjct: 130 WSLDRVSLMVFDECHHTRKNHAYNGIMREYFQGSSDRRPKIFGMTASPIW-----NPKDA 184

Query: 223 EGQISELESTLDSQVFTIEDKT-EMEVFVPSAKESCRFY-----DQSKFCGSDLKGKLEV 276
              ++ LE  LD++V  +     E+    P  +E    Y         +    L  +L++
Sbjct: 185 VESLATLERNLDAKVIAVRQHVDELMDHSPRPQELLHQYPAPLESYPAYHSKTLWDRLDL 244

Query: 277 S-------------WSKFDASLSKL--QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCL 321
                          ++++ + + L   G++L  Y D+  +   ++   S     +   L
Sbjct: 245 QRIPPEIDIPVDKIRTRYEVTYASLGPYGAELYLYNDIKQRIIQMQNTTSGMDEYLALNL 304

Query: 322 DELGLICAYEAVK--ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
            EL    A  A+   I L K      E E  R    + K F E+     GS +       
Sbjct: 305 AELNGDDALTAISADIPLPK------EVEDLRDGLAEFKSFFED---ENGSEV------- 348

Query: 380 LDFGFDYSKAVDLGYISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438
                     V L + S K+ EL+  LF  +  + Q   I+FVE+   A  + + + +VP
Sbjct: 349 ------IPTTVHLKWCSPKVRELIDILFAHYTSNFQ--GIVFVEQRHVAACLSKILPRVP 400

Query: 439 FLTHLT-VAYLTGSTTS------VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
            L+HL     L G  T+         +  + Q+++++ FR  K+NLL AT V EEG+  P
Sbjct: 401 QLSHLIKTGQLIGHGTTNLAKMQTKGMALRTQQDIVKLFRERKINLLIATSVAEEGLDFP 460

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTA 551
            C  VIRFD  + +  Y+QSRGRAR  +S+FI+M++ G+    ++  +   SE  +    
Sbjct: 461 ACDLVIRFDPLQHMVGYLQSRGRARHRSSKFIIMVQEGHENHLSRYKNFSESEPHLRLVY 520

Query: 552 LSRDPEACFLKA-------CTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYT 604
            +R       +            + + Y+V STGA +T +S+V L++  C ++P DK YT
Sbjct: 521 QTRGDRDDIDEDEEERDDPADLAERERYVVLSTGAVLTYNSAVGLLNHLCSLIPHDK-YT 579

Query: 605 PKPIFKYKSAEEAYECELTLPSNAPFQ----TIVGPTSRNKNLSKQLVCLEACEKLHQVG 660
           P  + +Y      +   L LPS+ P      + +GP  R+K  +K+ V   A ++LH++G
Sbjct: 580 PTHLPRYTG---DFTSTLQLPSSLPLTPADLSFMGPEKRSKKEAKRAVAFLAVKRLHELG 636

Query: 661 ALNDHLLPS 669
             +D+LLP+
Sbjct: 637 VFDDYLLPA 645



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 116/287 (40%), Gaps = 39/287 (13%)

Query: 1008 PPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT 1067
            P  +  R +    V  + ++LP +  R+  +  A   R E+        I   L+++ALT
Sbjct: 901  PLSMCRRAEFSEGVRDAFHVLPELCHRITDVYRAHAARVELGLPP----ILDDLLIQALT 956

Query: 1068 TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTD 1127
                   F+ +RLE LGDSVLK     HLF  +P +HEGQL   R  +V N TL     +
Sbjct: 957  IPSANAGFNNQRLETLGDSVLKLTTVVHLFNRFPFRHEGQLDTLRRNSVSNRTLLARAKE 1016

Query: 1128 RKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM 1187
              L+ Y+   +   R W                  TL    D  +  +        P   
Sbjct: 1017 VGLEEYLSCESQSMRVWRY----------------TLAAEDDPSWSVE--------PRRR 1052

Query: 1188 GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSL---VDDCITRASL 1244
             HR    +++ DC EA +GA +  GG+  AL     LG+     +        CI ++ +
Sbjct: 1053 AHRVFPRRSLQDCMEATLGAAFTTGGMGMALRAGTALGLSLGGPLPWDIRYGGCIPKSPV 1112

Query: 1245 RSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF--YCYQNL 1289
             +    + E       +GY F    LL EA+TH S   F    YQ L
Sbjct: 1113 SALFTLLQE------SLGYRFRSGRLLLEAMTHPSFNSFETSSYQRL 1153



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 1061 LILEALT--TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118
            L+LEA+T  +    E+ S +RLE LGD+V+  AV  +L+  +P+   GQLS  RS AVC 
Sbjct: 1132 LLLEAMTHPSFNSFETSSYQRLEFLGDAVVDLAVMRYLYNKFPQATSGQLSWARSRAVCA 1191

Query: 1119 STLHKLGTDR 1128
             +L  +   R
Sbjct: 1192 PSLASVAVKR 1201


>gi|328905041|gb|AEB54796.1| dicer 2 [Litopenaeus vannamei]
          Length = 1502

 Score =  284 bits (727), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 221/712 (31%), Positives = 357/712 (50%), Gaps = 70/712 (9%)

Query: 36  SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN--GFK 93
           S    S +F PR YQL++F  A ++N+I VL TG+GKT I+++LIK++   I+ +  G  
Sbjct: 4   SKEEASADFCPRSYQLELFNCALKKNSILVLGTGSGKTFISILLIKELGHQIRESLKGGS 63

Query: 94  KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
           K  +F+  TV LVHQQ   I+ HT FEV +Y G+ GVD W  + WQ E+ K++VLV+  Q
Sbjct: 64  KRTVFVVNTVPLVHQQAAAIQQHTPFEVGKYEGSMGVDYWTDEHWQNELEKHEVLVVVAQ 123

Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF----YHKSDNKPKVFGMTAS 209
           I LD +  A L L  V  +++DECHHATG+HP  +IM+ +     H  +  P++ G+TA 
Sbjct: 124 IFLDLILHAKLPLSSVNLLIMDECHHATGSHPMREIMRAYENLKQHSPEKLPRIMGLTAC 183

Query: 210 PVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCR-FYDQSKFCGS 268
            V RK      +    +  LE+ +D  + T  D   +  +    KE    FY +S    S
Sbjct: 184 VVHRK--CKRREVLKYMESLEAAMDCALVTSVDPETVLKYTTGPKEKVICFYTES--ITS 239

Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
           D +  ++          ++L G + +   D    +K  RKQ+      I + + +LG  C
Sbjct: 240 DYQETVK----------AQLAGLECDIITDCFINYKA-RKQIKKKVKNIEHIMSDLGDWC 288

Query: 329 AYEAVKICLEKV--LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
              A+K  +E +   +  EE    R    +    L+E L  +  A  L +K         
Sbjct: 289 VARAIKYEIEHLDETEGMEEDPKIR----EILKLLKERLREVYVACELKEK--------- 335

Query: 387 SKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV----KKVPFLTH 442
             A  + +I+ K+  LL++F    K  +V  +IFVER   AK++   +    K+ P  + 
Sbjct: 336 GMANPVEHITFKVKRLLEIFSKCNK--EVFGLIFVERRNTAKILYDLLLEIAKQNPEFSF 393

Query: 443 LTVAYLTG--STTSVD----ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496
           +  +Y+ G  S   +D     L  + QKE LE+FR G+ N L +T V+EEG+ +  C+ V
Sbjct: 394 VKPSYVVGCNSRPGIDIRLAELELRKQKETLENFRKGETNFLISTSVLEEGVDIRKCNVV 453

Query: 497 IRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRS-ERSVTDTALSRD 555
           +RFD+P+   +Y+QSRGRAR   S ++LM+E   + +  +   + R  E S+      R+
Sbjct: 454 VRFDMPQNYRAYVQSRGRARAKPSVYLLMVEEAKVSEMLECIGVYREIEDSLQYLCHGRN 513

Query: 556 -PEACFLKACTYVKTKSYI-----VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIF 609
            P A   +   +     YI         G  +T++S++ L++ YC  LPSDK+    P  
Sbjct: 514 LPTAQTTR--KHFAEDEYIKPYEPYGPVGPKITSNSAIQLVNLYCGKLPSDKFTDNLPEV 571

Query: 610 KYKSAEEAYECELTLPSNAPFQTIV-GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
             +  E      + LP  AP + ++ G    NK+L+K+   L+ C KLH++G L+ +L P
Sbjct: 572 VEEVKEGMTTVGIRLPIMAPLKDMIYGSGWANKDLAKKSAALQLCIKLHEMGELDSNLRP 631

Query: 669 SVEEPSENNLIS-----KKNESLP----GAGTTKRKELHGTTPIRALSGRWG 711
             +E ++++L+         E +P     +GT KR+ +H        S   G
Sbjct: 632 --KESNDDSLVEGLVDLPPEEPVPEGTSESGTRKRRRVHAKDLCYPFSNEHG 681



 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 137/569 (24%), Positives = 223/569 (39%), Gaps = 145/569 (25%)

Query: 945  KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMH 1004
            +++  YF E+YG+ +    QPLL  K      N L          KG+          + 
Sbjct: 870  ESYERYFLERYGLEIKDKNQPLLEAKHIPKELNYLKKIPKKAKEKKGN----------LV 919

Query: 1005 VHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQ-----------LREEINCHS- 1052
                PE    + +  S+   +  +PS+  RL S  L  +           ++ E+   S 
Sbjct: 920  PRFVPEFCGLIPIKASLWWQIMCMPSIFHRLNSFNLMHEFIVKTKITSPAIKNEVLDFSW 979

Query: 1053 -----------------------RNFHIPSSLILEALTTLGCCES--FSMERLELLGDSV 1087
                                   +  +I    +L A T     E   F++ERLELLGDS 
Sbjct: 980  TKKFIYELLGSSENTVPIFLDRKKQEYIHPFSMLHAFTLKEASEDKEFNLERLELLGDSF 1039

Query: 1088 LKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAP 1147
            LK+     LFL     HEG+LS  R   VCN TL +L   + L+G I     +P++  + 
Sbjct: 1040 LKFVTGEALFLRDESYHEGRLSQSRGKLVCNKTLFRLACQKGLEGKIAAKVLNPKKNGSI 1099

Query: 1148 GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG---------------------KPCD 1186
                ++P   E  + +LEVP D      +T   VG                     K   
Sbjct: 1100 PGFRIKP-EFEESLRSLEVPHDFWHQVPNTVKDVGDLKEAVFALMSDDASKDEKAEKKGS 1158

Query: 1187 MGHRW----MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRA 1242
              + W    +  K+IADC EA+IGAY +  G  AA   + WLG+    + SL+ +  T  
Sbjct: 1159 CYNPWTEHEVSDKSIADCVEAIIGAYLLVCGNEAAAAFLHWLGVGVFRDNSLLMEPKTVR 1218

Query: 1243 SLR---------SYVPRINEIKDIESKIGYEFTVKFLLQEAITHASV---QEFYCYQN-- 1288
            + R         +   +   +  +E KIGY F  +  + +A+TH+S    Q   CYQ   
Sbjct: 1219 TARVRKECAQDLTIFYKKAVLDRLEKKIGYTFRDRSFIVQAVTHSSYVNNQVTDCYQRLE 1278

Query: 1289 ------------------------------------------------LYKHLQHCSTLL 1300
                                                            L++HL H +  L
Sbjct: 1279 FLGDAVLDYLVTCHIFCRFTDYSPGQLSDLRSYFVKNDTLGRAAAKGKLHQHLLHLNPKL 1338

Query: 1301 LSQITEYVKSFPKP--GETTDSGPSMK------APKALGDLLESIVGAVLIDTKLNLDEV 1352
             + I +++    +   GE  ++   ++       PKALGD++E+I+GAV +D+  +L   
Sbjct: 1339 EASIDKFLSILHQDPLGEELNTEDDVQDCEDVEIPKALGDMVEAIIGAVYLDSNRSLKVA 1398

Query: 1353 WRIFKPILSPIVTP--DKLELPPLRELIE 1379
            W++ + IL  ++      ++L P+R+L+E
Sbjct: 1399 WQVIERILGDLLNTSIQTIQLNPIRQLLE 1427


>gi|403417815|emb|CCM04515.1| predicted protein [Fibroporia radiculosa]
          Length = 1463

 Score =  283 bits (724), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 212/673 (31%), Positives = 330/673 (49%), Gaps = 84/673 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
            +PR YQ ++F  A+R N IA L+TG+GKT I+ +LIK I+   +  G +K+I+FL P V
Sbjct: 12  LLPRRYQEEIFARAQRGNVIAALDTGSGKTYISTLLIKWISA--RHIGLRKIIVFLVPKV 69

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            LV QQ D I   T   V +  GA  VD  D Q W+KE+++ DVLVMT QI L+ L  + 
Sbjct: 70  ALVDQQGDFIAKQTPLRVIKCCGATAVDLSDRQGWKKELDRADVLVMTAQIFLNLLTHSH 129

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMDC 222
            SLD V  +V DECHH   NH Y  IM+E++   + ++PK+FGMTASP     + +  D 
Sbjct: 130 WSLDKVSLMVFDECHHTRKNHAYNGIMREYFQCPTQDRPKIFGMTASP-----IWNPKDA 184

Query: 223 EGQISELESTLDSQVFTIEDKT-----------EMEVFVPSAKESCRFYDQSKFCG---- 267
              ++ LE  LD++V  +               E+    P   +S   Y           
Sbjct: 185 VESLATLERNLDAKVIAVRQHVGELMDHSPKPQELLHEYPPPLQSYPVYPTPTLWERMNL 244

Query: 268 -----------SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAK 316
                        ++ + EV++    ASL    G++L  Y D+  +   + +Q+S     
Sbjct: 245 QQLPPNIGIPIDKIRTRYEVTY----ASLGPF-GAELYLYNDIKQRITQIFQQISG--VD 297

Query: 317 ILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLAD 376
           I Y           ++V   L  V +   E E  + + ++ + F E+  +   +++PL  
Sbjct: 298 IDYLSVGYADTAGGDSVVPNLPDV-ELPAELEDLQDALVEYRSFFEDDSN--SNSVPL-- 352

Query: 377 KIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVL-CIIFVERIIAAKVVERFVK 435
                        V L + S K+ EL+ +   FG  T     I+FVE+   A  +   + 
Sbjct: 353 ------------TVHLKWCSPKVRELIDIL--FGHYTSTFQGIVFVEQRHVAACLATMLS 398

Query: 436 KVPFLTHLTVA-YLTGSTTSVDA------LTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488
           +VP L+HL  +  L G   S  A      +  K Q+++++ FR  K+NLL AT V EEG+
Sbjct: 399 RVPQLSHLIKSEQLIGHGASTLAKSQMKGMALKTQQDIVKMFRERKINLLIATSVAEEGL 458

Query: 489 HVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVT 548
             P C  VIRFD  + +  Y+QSRGRAR  +S+FI+M+++G+     +      SE  + 
Sbjct: 459 DFPACDLVIRFDPLQHMVGYLQSRGRARHRSSKFIIMVQQGHTVHTARYKSFSESEPQLR 518

Query: 549 DTALSRDPEACF--------LKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSD 600
                RD EA F               + + Y+V STGA +T +S++ L++  C ++P D
Sbjct: 519 VVYQRRDIEAHFPDEEEEEQAHPADLAERERYVVPSTGAILTYNSAIALLNHLCSLIPHD 578

Query: 601 KYYTPKPIFKYKSAEEAYECELTLPSNAPFQ----TIVGPTSRNKNLSKQLVCLEACEKL 656
           K +TP  + +Y      +   L LP + P      T VGP  R+K  +K+ V   A ++L
Sbjct: 579 K-FTPTHLPRYTG---DFSSTLQLPMSLPLPQEDLTYVGPNRRSKKEAKRAVAFVAVQRL 634

Query: 657 HQVGALNDHLLPS 669
           H +G  +D+LLP+
Sbjct: 635 HLLGVFDDYLLPA 647



 Score = 97.1 bits (240), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 160/399 (40%), Gaps = 65/399 (16%)

Query: 907  LKDMVVLAIHTGRIYSIVEIVNN-SSAESPFDGNTDDDSKTFVNYFSEKY---GIVLIHP 962
            L+ +V+ +   GR Y + +I  + S   +P  G+ +    T+  Y+ +K+   G     P
Sbjct: 802  LQTLVMCSREPGRPYLLRKIRTDISPLSTPPPGSREAAFSTYKEYWQDKFSRKGTTFEVP 861

Query: 963  G-------QPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRV 1015
                    QP LR       H   V   D G   +G+   +      + V  P  L  R 
Sbjct: 862  ETGPCVELQPYLR-------HTSCVYSLDNGDGAQGAPMTV-----PLVVLFPLSLCRRA 909

Query: 1016 DVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESF 1075
            ++   V ++ ++LP +  R+  +  A   R E+        I   L+++ALT       F
Sbjct: 910  EISEDVFRAFHVLPELCHRITDVYRAHTARIELGLPP----IVDDLLVQALTLPSANAGF 965

Query: 1076 SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIR 1135
            + +RLE LGDSVLK A   +LF  YP +HEGQL   R  +V N TL     +  L+ Y+ 
Sbjct: 966  NNQRLETLGDSVLKLATVVYLFNKYPHRHEGQLDVLRRNSVSNRTLLARAKEVGLEQYLS 1025

Query: 1136 DSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSK 1195
                  R W    + +  P              D   F         +P     R    +
Sbjct: 1026 SEPQSVRLW----RYTALP--------------DRDLF---------EPYRYVPRVFPRR 1058

Query: 1196 TIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYV---PRIN 1252
            ++ DC EAL+GA +V GG+  AL     LG+      S        A     +   P   
Sbjct: 1059 SLQDCMEALLGAAFVAGGIPMALRAGTALGL------SFGGPLPWNARYGGQIAESPVTV 1112

Query: 1253 EIKDIESKIGYEFTVKFLLQEAITHAS--VQEFYCYQNL 1289
               D++  +GY F    LL EA+TH S    E   YQ L
Sbjct: 1113 LFTDLQDTLGYRFRCGKLLLEAVTHPSFGAAETSSYQRL 1151



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 1061 LILEALT--TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118
            L+LEA+T  + G  E+ S +RLE LGD+++   V  +L+  +P+   GQLS  RS AVC 
Sbjct: 1130 LLLEAVTHPSFGAAETSSYQRLEFLGDALIDLTVMRYLYNKFPEATSGQLSWARSRAVCA 1189

Query: 1119 STLHKLGTDR 1128
              L  +   R
Sbjct: 1190 PALASVAVKR 1199


>gi|409046535|gb|EKM56015.1| hypothetical protein PHACADRAFT_122116 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 1496

 Score =  282 bits (721), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 207/678 (30%), Positives = 327/678 (48%), Gaps = 82/678 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
            +PR YQ ++F  A+ RN IA L+TG+GKT I+ +LIK IA   +  G  K+I+FL P V
Sbjct: 11  LLPRRYQEEIFSRAQERNVIAALDTGSGKTYISTLLIKWIAA--RDAGLGKIIVFLVPKV 68

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            LV QQ D I   T   V + YGA  +D  D + W+KEI  +DVLVMT QI L+ L  + 
Sbjct: 69  ALVEQQGDFIARETPLRVSKCYGATAIDMTDRRGWRKEIELHDVLVMTAQIFLNILTHSH 128

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMDC 222
            ++D V  +V DECHH   NH Y  IM+E++   S+ +PKVFGMTASP     + +  D 
Sbjct: 129 WTMDKVSLMVFDECHHTRKNHAYNGIMREYFQWTSEKRPKVFGMTASP-----IWNPRDA 183

Query: 223 EGQISELESTLDSQVFTIEDKT-EMEVFVPSAKESCRFYDQS-----KFCGSDLKGKLEV 276
              ++ LE  LD++V  + +   E+    P  +E  R Y  S      +  ++L  +L +
Sbjct: 184 VESLATLERNLDAKVIAVREHVEELADHSPRPQEVLREYQASPITYPHYPATNLWARLAL 243

Query: 277 SW--SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334
                 FD  + K++            + +     L  Y A++    D    I  +    
Sbjct: 244 DSLPPSFDIPVEKVR-----------TRFEVTYHSLGPYGAELFLYHDIKHRIAQF---- 288

Query: 335 ICLEKVLKAQEECEIYRQSSL-----QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK- 388
                + +A++  E    + L     +      E+ H     + L  + F DF FD    
Sbjct: 289 -----ISQAEDHMEYMNTTHLDGVQPEGIQLPPELAH-----MELVLQQFSDF-FDNEDD 337

Query: 389 ------AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT- 441
                  +DL + S K+  L QL   + K      IIFVE+   A  + + + ++P L  
Sbjct: 338 PDTVPIRIDLKWCSPKVVLLSQLLFEYYKQN-FQGIIFVEQRHVAACLSKMLPRIPPLEL 396

Query: 442 HLTVAYLTGSTTS------VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSY 495
           +   A L G   S      V  +  K Q+E ++ FR G+ NLL AT V EEG+  P C  
Sbjct: 397 YFKSAQLIGHGASSVQKSQVRGMALKSQQEAVKMFRDGECNLLVATSVAEEGLDFPACEL 456

Query: 496 VIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRD 555
           V+RFD  + +  YIQSRGRARQ  + F++M++ G     ++      SE  +     +R+
Sbjct: 457 VVRFDPIQHMVGYIQSRGRARQKAATFMVMVQEGQASHVDRYKAFSESEPQLRLVYQNRE 516

Query: 556 --PEAC----------FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYY 603
             P+                    + + Y+V +TGA +T ++++ L++  C ++P D+ +
Sbjct: 517 DLPKPVQDDELEEGEEREDPLDLAERERYVVPNTGAILTYNTAIGLLNHLCSLIPRDR-F 575

Query: 604 TPKPIFKYKSAEEAYECELTLPSNAPFQ----TIVGPTSRNKNLSKQLVCLEACEKLHQV 659
           TP  + +Y      +E  L LPS+ P      T  GPT R K  +K+     A ++LH++
Sbjct: 576 TPIHLPQYSG---DFEATLQLPSSLPLPKEHLTFTGPTKRTKKEAKRAAAFMAVKRLHEL 632

Query: 660 GALNDHLLPSVEEPSENN 677
           G  +++LLP+     +N+
Sbjct: 633 GVFDNYLLPARSATGDND 650



 Score =  105 bits (263), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 181/448 (40%), Gaps = 96/448 (21%)

Query: 991  GSKSGMNTKKPQMHVHMPPELLVRVDVPIS--VVKSLYLLPSVMQRLESLMLASQLREEI 1048
            GS    N  +P +  H+ P  L R   P+S  V ++L +LP +  RL  L  A  +R E+
Sbjct: 879  GSSVPANKTQP-LGAHIYPMSLCRW-APLSPDVYRALRVLPELTHRLTDLYRARAIRAEL 936

Query: 1049 NCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQL 1108
                    I   L+++ALT       F+ +RLE LGDSVLK     HLF  +P +HEGQL
Sbjct: 937  GLPP----IQDDLMIQALTLPSANAGFNNQRLETLGDSVLKLCTVVHLFNRFPHRHEGQL 992

Query: 1109 SARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPL 1168
               R  +V N TL     +  L+ Y+       R W    + +L       G   L  P+
Sbjct: 993  DILRRNSVSNRTLLARAKEVMLEQYLTSEPQTMRIW----RFAL------SGEVDLSDPM 1042

Query: 1169 DGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDA 1228
              +F +               R +  +++ DC EA +GA +  GG++ AL+    +G   
Sbjct: 1043 PDRFVS---------------RRIPKRSLQDCMEASLGAGFATGGIMMALH----VGTAL 1083

Query: 1229 DLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ------- 1281
             L          R       P      +++  +GYEF    LL EA+TH S +       
Sbjct: 1084 GLGFGGTLLWPARYDRLPETPVPVMFHEVQEILGYEFKSGHLLIEAVTHPSFRSPTNSSY 1143

Query: 1282 ---EF------------YCYQ-------------------------------NLYKHLQH 1295
               EF            Y Y                                 L++ L  
Sbjct: 1144 QRLEFMGDALIDLVVMRYLYNKFPTATSGQLSWARSRAVCAPALAHIAVNVLGLHRPLLI 1203

Query: 1296 CSTLLLSQITEYVKSFPKPG--ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1353
             +  L   I++YV    +    E   SG     PKA+ D+LESI+GAVL+DT  N ++  
Sbjct: 1204 NNIELSMAISKYVPILQETSEEEIIHSGWKHDPPKAISDVLESILGAVLVDTHYNFEKTA 1263

Query: 1354 RIFKPILS---PIVTPDKLELPPLRELI 1378
             I +  L     +++PD +   P+ EL+
Sbjct: 1264 VIAENALRGLLRVLSPD-MPRDPVSELM 1290


>gi|378405592|gb|AFB82635.1| dicer-2 [Marsupenaeus japonicus]
          Length = 1502

 Score =  277 bits (708), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 217/712 (30%), Positives = 354/712 (49%), Gaps = 70/712 (9%)

Query: 36  SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN--GFK 93
           S    S +F PR YQL++F  A ++N+I VL TG+GKT I+++LIK++   I+ +  G  
Sbjct: 4   SKEEASADFCPRSYQLELFNCALKKNSILVLGTGSGKTFISILLIKELGHQIRESLKGGS 63

Query: 94  KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
           K  +F+  TV LVHQQ   I+ HT FEV +Y G+ GVD W  + WQ E+ K++VLV+  Q
Sbjct: 64  KRTVFVVNTVPLVHQQAAAIQQHTPFEVGKYEGSMGVDYWTDEHWQNELEKHEVLVVVAQ 123

Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF----YHKSDNKPKVFGMTAS 209
           I LD +  A L L  V  +++DECHHATG+HP  +IM+ +     H  +  P++ G+TA 
Sbjct: 124 IFLDLILHAKLPLSSVNLLIMDECHHATGSHPMREIMRAYENLKQHSPEKLPRIMGLTAC 183

Query: 210 PVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCR-FYDQSKFCGS 268
            V RK      +    +  LE+ +D  + T  D   +  +    KE    FY +S    S
Sbjct: 184 VVHRK--CKRREVLKYMESLEAAMDCALVTSVDPETVLKYTTGPKEKVICFYTES--ITS 239

Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
           D +  ++          ++L G + +   D    +K  RKQ+      I + + +LG  C
Sbjct: 240 DYQETVK----------AQLAGLECDIITDCFINYKA-RKQIKKKVKNIEHIMSDLGDWC 288

Query: 329 AYEAVKICLEKV--LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
              A+K  +E +   +  EE    R    +    L E L  +  A  L +K         
Sbjct: 289 VARAIKYEIEHLDETEGMEEDPKIR----EILKLLSEKLREVYVACELKEK--------- 335

Query: 387 SKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV----KKVPFLTH 442
             A  + +I+ K+  LL++F    K  +V  +IFVE    AK++   +    K+ P  + 
Sbjct: 336 GMANPVEHITFKVKSLLEIFSKCNK--EVFGLIFVESRNTAKILYDLLLEIAKQNPEFSF 393

Query: 443 LTVAYLTG--STTSVD----ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496
           +  +Y+ G  S   +D     L  + Q+E LE+FR G+ N L +T V+EEG+ +  C+ V
Sbjct: 394 VKPSYVVGCNSRPGIDIRLAELELRKQRETLENFRRGETNFLISTSVLEEGVDIRKCNVV 453

Query: 497 IRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRS-ERSVTDTALSRD 555
           +RFD+P+   +Y+QSRGRAR   S ++LM+E   + +  +   + +  E S+      R+
Sbjct: 454 VRFDMPQNYRAYVQSRGRARAKPSVYLLMVEEAKVSEMLECIGVYKEIEDSLQYLCHGRN 513

Query: 556 -PEACFLKACTYVKTKSYI-----VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIF 609
            P A   +   +     YI         G  +T++S++ L++ YC   PSDK+    P  
Sbjct: 514 LPTAQTTR--KHFAEDEYIKPYEPYGPVGPKITSNSAIQLVNLYCGKFPSDKFTDNLPEV 571

Query: 610 KYKSAEEAYECELTLPSNAPFQTIV-GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
             +  E      + LP  AP + ++ G    NK+L+K+   L+ C KLH++G L+ +L P
Sbjct: 572 VEEVKEGMTTVGIRLPIMAPLKDMIYGSGWANKDLAKKSAALQLCIKLHEMGELDSNLRP 631

Query: 669 SVEEPSENNLIS-----KKNESLP----GAGTTKRKELHGTTPIRALSGRWG 711
             +E ++++L+         E +P     +GT KR+ +H        S   G
Sbjct: 632 --KESNDDSLVEGLVDLPPEEPVPEGTSESGTRKRRRVHAKDLCYPFSNEHG 681



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 139/569 (24%), Positives = 222/569 (39%), Gaps = 145/569 (25%)

Query: 945  KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMH 1004
            +++  YF E+YG+ L    QPLL  K      N L          K        KK  + 
Sbjct: 870  ESYERYFLERYGLELKDKNQPLLEAKHIPKELNYL----------KKIPKKAREKKGNLV 919

Query: 1005 VHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQ-----------LREEINCHS- 1052
                PE    + +  S+   +  +PS+  RL S  L  +           ++ E+   S 
Sbjct: 920  PRFVPEFCGLIPIKASLWWQIMCMPSIFHRLNSFNLMHEFIVKTKITSPAIKNEVLDFSW 979

Query: 1053 -----------------------RNFHIPSSLILEALTTLGCCES--FSMERLELLGDSV 1087
                                   +  +I    +L A T     E   F++ERLELLGDS 
Sbjct: 980  TKKFIYELLGSSENTVPRFLDRKKQEYIHPFSMLHAFTLKEASEDKEFNLERLELLGDSF 1039

Query: 1088 LKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAP 1147
            LK+     LFL     HEG+LS  R   VCN TL +L   + L+G I     +P++  + 
Sbjct: 1040 LKFVTGEALFLRDESYHEGRLSQSRGKRVCNKTLFRLACQKGLEGKIAAKVLNPKKNGSI 1099

Query: 1148 GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG---------------------KPCD 1186
                ++P   E  + +LEVP D      +T   VG                     K   
Sbjct: 1100 PGFRIKP-EFEESLRSLEVPHDFWHQVPNTVKDVGDLKEAVFALMSDDASKDEKAEKKGS 1158

Query: 1187 MGHRW----MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRA 1242
              + W    +  K+IADC EA+IGAY    G  AA   + WLG+    + SL+ +  T  
Sbjct: 1159 CYNPWTEHEVSDKSIADCVEAIIGAYLRVCGNEAAAAFLHWLGVGVFRDNSLLMEPKTVR 1218

Query: 1243 SLR---------SYVPRINEIKDIESKIGYEFTVKFLLQEAITHASV---QEFYCYQN-- 1288
            + R         +   +   +  +E KIGY F  +  + +A+TH+S    Q   CYQ   
Sbjct: 1219 TARVRKECAQDLTIFYKKAVLDRLEKKIGYTFRDRSFIVQAVTHSSYVNNQVTDCYQRLE 1278

Query: 1289 ------------------------------------------------LYKHLQHCSTLL 1300
                                                            L++HL H +  L
Sbjct: 1279 FLGDAVLDYLVTCHIFCRFTDYSPGQLSDLRSYFVKNDTLGRAAAKGKLHQHLLHINPKL 1338

Query: 1301 LSQITEYVKSFPKP--GETTDSGPSMK------APKALGDLLESIVGAVLIDTKLNLDEV 1352
             + I +++    +   GE  ++   ++       PKALGD++E+I+GAV +D+  +L   
Sbjct: 1339 EASIDKFLSILHQDPLGEELNTEDDVQDCEDVEIPKALGDMVEAIIGAVYLDSNRSLKVA 1398

Query: 1353 WRIFKPILSPIVTP--DKLELPPLRELIE 1379
            W++ + IL  ++      ++L P+R+L+E
Sbjct: 1399 WQVIERILEDLLNTSIQTIQLNPIRQLLE 1427


>gi|452979125|gb|EME78888.1| hypothetical protein MYCFIDRAFT_43585 [Pseudocercospora fijiensis
           CIRAD86]
          Length = 1516

 Score =  273 bits (699), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 193/647 (29%), Positives = 322/647 (49%), Gaps = 61/647 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK----KLIIFLAP 101
           PR YQ+++FE AK+ NTIAVL+TG+GKT+IAV+L++ I      N  K    K+  FL  
Sbjct: 70  PREYQIELFERAKQENTIAVLDTGSGKTLIAVLLLRWIIDHEIENRAKGSQAKISFFLVA 129

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V LV+QQ+ V+  + D +V    GA   D WD   W KE  +N  +V T +IL  AL  
Sbjct: 130 SVTLVYQQFAVLETNLDHKVARLCGADNTDRWDKTRWMKECYENKAIVCTAEILFQALSF 189

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSA 219
            +L++  +  ++ DE HH   NH Y +I+K+FY + +  ++P++FGMTASP     + + 
Sbjct: 190 GYLTMKQINLLIFDEAHHTKKNHSYARIIKDFYLEEEVHDRPRIFGMTASP-----IDAK 244

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
           MD      ELE+ LDS++ T  D + +   +   KE    Y      G            
Sbjct: 245 MDVIQAAHELEALLDSKIATTSDMS-LSSAIKKPKEQIMRYPSLPQAG------------ 291

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL-- 337
            F+  L  LQ  +   Y DM         Q +    +       LG  CA   +  CL  
Sbjct: 292 -FETPL--LQAVRAR-YSDM--------TQFTKIFTRAAEVARHLGSWCADFYLLDCLSD 339

Query: 338 --EKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLAD--KIFLDFGFDYSKAVDLG 393
              K  K   E + + +++ +    L+  L  I +A+  A   +  LD        +   
Sbjct: 340 EKSKRYKLAAEQKFHARNAGREVAALDRALKRIDAAVAFAQEHRNILD------TEITRD 393

Query: 394 YISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGST 452
            IS+K++EL + L   F + +   CI+FV++   A+++    +++    H+   +L GS 
Sbjct: 394 RISSKVYELYRYLAEQFERPSSNRCIVFVDKRYTARLLNSLFQRIK-SPHMKSTFLIGSG 452

Query: 453 TS---VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
            +    D  + + Q  VL  FR G +N LFAT V EEG+ VP+C+ +IRFD+  T+  Y+
Sbjct: 453 NTGQDEDNFSFRQQVMVLLKFRKGDLNCLFATSVAEEGLDVPDCNLIIRFDMYATMIQYV 512

Query: 510 QSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVT--------DTALSRDPEACFL 561
           QSRGRAR  NS+FI M+E GN   +  + ++  +E S+         D  L  + ++   
Sbjct: 513 QSRGRARNQNSKFIHMVENGNSIHKETVNEVRYAELSMRAYCDQLPEDRKLQGNSDSIEA 572

Query: 562 KACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECE 621
                   +  +   + A +T  +++N++  +   +P+D +    P +   S  + + CE
Sbjct: 573 LMERERNMEVRVDPVSKAKLTYGNALNILATFVSAIPTDGHEMQHPTYVVSSRGQKFVCE 632

Query: 622 LTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
           + LP N+P ++++G   + K L+K+    EA  +L +   +N++L+P
Sbjct: 633 VVLPGNSPLRSMIGKVHQKKTLAKRSAAFEAVIELRKKSWINENLMP 679



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 144/374 (38%), Gaps = 70/374 (18%)

Query: 1001 PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSS 1060
            P    ++ PE L    +  +V  S ++ P++  R ES +++ +      C +        
Sbjct: 953  PVTKAYIVPEPLRISAITPNVAASCFVWPAIAHRFESCLISIE-----GCEAVGVTCGPE 1007

Query: 1061 LILEALT-----------------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKK 1103
              L A T                   G  E++  ERLE +GD+ LK A +   F+  P +
Sbjct: 1008 FALAAFTKDSDNQGEHEAEERVNFQRGMGENY--ERLEFIGDTFLKTATTISTFIMNPNE 1065

Query: 1104 HEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDT 1163
            +E +   RR   +CN  L++     KL  YIR  AF+ R W   G L L           
Sbjct: 1066 NEFEFHVRRMLMLCNKNLYQTALQLKLYEYIRSLAFNRRYWYPEG-LKL----------- 1113

Query: 1164 LEVPLDGKFFTQDTKVVVGKPCDMGHR----WMGSKTIADCAEALIGAYYVGGGLIAALY 1219
                L G      T VV G+  +M H      +G KTIAD  EALIGA Y+        +
Sbjct: 1114 ----LVG------TGVVKGQEKEMYHEPREVGLGEKTIADVCEALIGAAYLSHDKPGEAW 1163

Query: 1220 MMK-WLGIDADLEVSLVDDCITRASLRSYVPRINE-----------IKD----IESKIGY 1263
              + W      +   +  D     + + Y+   ++            KD    +E +  Y
Sbjct: 1164 EPEHWRDAVRAVTKLVKSDDHKMQTWQDYIDAYDKPAYQTGESTAVQKDLALRVEKEHAY 1223

Query: 1264 EFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLL--SQITEYVKSFP--KPGETTD 1319
             FT   LL  A  H SV   Y     Y+ L+     LL  + IT     +P   P   T+
Sbjct: 1224 TFTYPRLLYSAFMHPSVPYMYEKVPSYQRLEFLGDALLDMASITYLFYKYPDKDPQWLTE 1283

Query: 1320 SGPSMKAPKALGDL 1333
               +M + K LG L
Sbjct: 1284 HKMAMVSNKFLGAL 1297


>gi|340373457|ref|XP_003385258.1| PREDICTED: endoribonuclease Dicer-like [Amphimedon queenslandica]
          Length = 1520

 Score =  273 bits (698), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 200/656 (30%), Positives = 328/656 (50%), Gaps = 75/656 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAPT 102
           R YQL++ + A  +NTI +L TGAGKT IAV+LIK    +I  + + N   K  IFL  T
Sbjct: 7   RSYQLELLDSAIEKNTIVLLGTGAGKTFIAVLLIKQFSHEILDSFRDNPNSKRTIFLVTT 66

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V LV QQ + IR H D  V  YYG  GVD W    W  E+  N +LVMT QI LD L   
Sbjct: 67  VALVTQQANYIRTHIDLNVGTYYGEMGVDAWRLTKWNSELECNHILVMTRQIFLDMLSHG 126

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSAM 220
           F+S+  V  I+ DECHHA  N PY +IMK +  +    NKP + G+TAS  +  G     
Sbjct: 127 FISMSRVNLIIFDECHHAVKNDPYVQIMKHYNDERYMCNKPHILGLTAS--IISGKCKPD 184

Query: 221 DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD-QSKFCGSDLKGKLEVSWS 279
             E +I +LE+TL+++V T  D  E+  +  + +ES   Y   S    S+L  +L+   S
Sbjct: 185 KLEERIRKLEATLNARVETATDLAEVAKYATNPQESLVTYGATSNQHHSELTVRLKSVIS 244

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339
           +    + +   S          +  T+  +L  Y  + +Y ++ + +  A EAV++   +
Sbjct: 245 ETLKFMYQAPQSS---------RAGTVPSRLQCYLEECIYVMENISITSAVEAVRLIETE 295

Query: 340 VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKL 399
           +    +E +   +  +   + L   L +  S     +++  D   D+S          K 
Sbjct: 296 IKDMLDEGDAVGEWDITLCHLLLLKLSIFSSQ---CNELLFDGVNDHSP---------KF 343

Query: 400 HELLQLFLSFGKS-TQVLC-IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS--- 454
            +LL++ L+   S  +  C I+FVE+ + A  + + + ++  L  +  +++ G  +S   
Sbjct: 344 SKLLEILLNLRSSQAEDFCGIVFVEQRMTAMCLSQIITEIK-LPGIRCSFIVGHASSSGK 402

Query: 455 --------VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
                      +  K Q+EVL+ FR G +NLL AT V+EEG+ V  C+ VIR+D PKT  
Sbjct: 403 IMEKKVSGSGGMNAKKQQEVLKKFRSGTLNLLIATSVVEEGLDVRKCNVVIRYDFPKTFQ 462

Query: 507 SYIQSRGRARQHNSQFILMLERG-------NLKQRNKLFDIIRS----ERSVTDTALSRD 555
           S++QS+GRAR  +S++++++++        ++K+  KL +++ S      S  +  +SR 
Sbjct: 463 SHVQSKGRARAKDSRYLVLIDQTQESKCTCDIKEYAKLEEMLASLCHNRESPDEDEVSRQ 522

Query: 556 PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE 615
                     ++         +G S+  DSS++L+HRYC+ LP D+Y    P FK +  +
Sbjct: 523 --------LMHLMKPYQPYGPSGPSLPIDSSLSLLHRYCQKLPGDQYTVMAPDFKLEPVD 574

Query: 616 EA------------YECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQV 659
           +A            + C + LP+ +P ++  G      NL++Q     A + LH+V
Sbjct: 575 DAICQLDGRRYETLFMCTVYLPTCSPVRSAQGIAVPRVNLARQSAAFIAIQDLHKV 630



 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 160/388 (41%), Gaps = 82/388 (21%)

Query: 921  YSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLK---QSHNPHN 977
            + + E+++ +  E+P      + +K++  YF  KYG  +++   P L  K      N   
Sbjct: 800  FQLYEVLSYNPEETPLSLFPGESTKSYFEYFLNKYGYSIVYICDPSLTCKPVSMGVNGVR 859

Query: 978  LLVN-FNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLE 1036
            LLV+ F D   S   +    ++++    + + PEL     +P S  K    +PS++ RL 
Sbjct: 860  LLVSRFKDTNRSSASAPDDESSQRSS-EIRLFPELCKVWPIPASFWKLCRCVPSIIHRLV 918

Query: 1037 SLMLASQLREEIN--------------CH------------------------------- 1051
              +LA +L + I+              CH                               
Sbjct: 919  GFLLAEELAQSISSFTGIGVTEVYEYRCHPDIMREGEPNEMEHNSESVFHWRDGGYIVDA 978

Query: 1052 --SRNFHI----------PS-SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFL 1098
              S   H           PS SL+L++LT     +SF +ERLE LGDS LK AVS  LF 
Sbjct: 979  DTSNQLHSQVNAEGVIRGPSNSLLLQSLTGTSAKDSFDLERLETLGDSFLKLAVSVSLFC 1038

Query: 1099 TYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRR-WVAPG-QLSL-RPV 1155
               K HEG+L+  R   + N  L  L   + L G ++   F+P   W+ PG  LSL   +
Sbjct: 1039 GRGKDHEGKLTRSRINRISNFNLSFLAKKKGLPGLLQTEQFEPLSGWIPPGFSLSLDSAL 1098

Query: 1156 PCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLI 1215
            P     +TL   +   ++ + T                 K IAD  EAL+GAY + GGL 
Sbjct: 1099 PDHVPPNTLPAVIQKYYYHKVT----------------DKGIADSTEALLGAYLIAGGLG 1142

Query: 1216 AALYMMKWLGIDADLEVSLVDDCITRAS 1243
            A    + WLG+    E S     +T +S
Sbjct: 1143 AGFSFLDWLGLQKPTESSSFSQDVTMSS 1170



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 27/142 (19%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLREL------ 1377
            ++ PK LGD+LES+ GA+ +D+ ++L+ VW  F P   P++   K + PP+  +      
Sbjct: 1397 LEPPKVLGDVLESLAGALFLDSGMSLETVWSYFYPFFRPLIESFKEKGPPVHPIQELMRT 1456

Query: 1378 ---IELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLK 1434
               +E+  S     K  CT+K  ++  +++     V  + E    S K AK  AA ++++
Sbjct: 1457 EPSVEIMQSSTRRSKHRCTIK--VIDKDIQ-----VSCIAE----SYKTAKNGAAKRVIR 1505

Query: 1435 KLEVCEKRISKGASNTGKLGDD 1456
            K+    K I K   N   + DD
Sbjct: 1506 KI----KEIGK---NRQDMADD 1520



 Score = 45.1 bits (105), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 1060 SLILEALTTLGCCE----SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWA 1115
            +L+L+ALT          + S +RLE LGD+VL Y ++C L+  +P    GQ++  RS  
Sbjct: 1253 ALLLQALTHPSYSNKNRVTRSYQRLEFLGDAVLDYLITCCLYTEFPSYTPGQITETRSAL 1312

Query: 1116 VCNSTLHKLGTDR 1128
            V N T  ++   +
Sbjct: 1313 VNNVTFAEIAVKK 1325


>gi|440632076|gb|ELR01995.1| hypothetical protein GMDG_05164 [Geomyces destructans 20631-21]
          Length = 1634

 Score =  271 bits (694), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 201/649 (30%), Positives = 326/649 (50%), Gaps = 52/649 (8%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA----QAIKSNGFKKLIIFLAP 101
           PR YQ+++FE AK +NTIAVL+TG+GKT+IA +L++ +     +  ++ G K++  FL  
Sbjct: 174 PREYQIELFEKAKTQNTIAVLDTGSGKTLIAALLLRHVIDEELERRENGGDKRIAFFLVD 233

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V LV QQY V++ + + ++E++ G  G D W  + W+K  N+N V+V T ++L   L  
Sbjct: 234 SVALVFQQYAVLKCNLNHKMEQFCGDMGCDLWSKELWEKHFNENMVIVCTAEVLFQCLHH 293

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK---PKVFGMTASPVVRKGVSS 218
           +F+++  +  ++ DE HHA  NH Y +I+K+FY    ++   P++FGMTASP     V +
Sbjct: 294 SFITMKQINLLIFDEAHHAKRNHAYARIIKDFYASEPDQSLVPRIFGMTASP-----VDA 348

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
             + +   +ELE+ L SQ+ T  D + ++      KE   +Y+        L    E   
Sbjct: 349 RTNIKRGAAELEALLHSQIATASDASLLQYTNKKTKEEVAYYNA-------LPPSTE--- 398

Query: 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338
           S+    +++L G    C K + +   T    L  + A  +  +   G     E V     
Sbjct: 399 SQLFKKVNQLVGGIKECSKPL-EYAVTASSDLGSWIADRVLLISFTG-----EDV----- 447

Query: 339 KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTK 398
           K L+A+ E   ++Q+  Q        L      L  A +I +   F  S  +    +S+K
Sbjct: 448 KRLEAKIESNFHKQA--QIDPIPLSNLENRKEKLQSAQQIIMAHVF-ASPQLSRSQLSSK 504

Query: 399 LHELL-QLFLSFGKSTQVLCIIFVERIIAAKVV-ERFVKKVPFLTHLTVAYLTGSTTSVD 456
           +  L  +L   F ++T   CI+FV++   AK++ + F +      HL V  LTG+     
Sbjct: 505 VLALASKLRERFERTTFDKCIVFVKQRYTAKLLADLFARPQIGTPHLRVGSLTGTRNRNG 564

Query: 457 A-LTPKVQKEV--LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
           A L    + +V  L  FR G++N LFAT V EEG+ +P+C+ VIRFDL  TV  YIQSRG
Sbjct: 565 ADLEASFRNQVITLRRFRQGEINCLFATSVAEEGLDIPDCNLVIRFDLYSTVIQYIQSRG 624

Query: 514 RARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVK----- 568
           RARQ NS +   +ERG+ K  + L   +R   ++        PE   L    Y       
Sbjct: 625 RARQDNSVYFHFIERGS-KVEDALVREVRRNENILKEFCQALPEDRLLSGNNYNMDYFLA 683

Query: 569 -----TKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELT 623
                 ++Y   STGA +T   S++++  +   LP     TP P +   +    Y CE+ 
Sbjct: 684 KERNIMRTYTEPSTGAKLTYRMSLSVLANFVASLPHSSESTPHPEYMMTAMGVKYVCEVI 743

Query: 624 LPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE 672
           LP N+P    +G  +  K ++K     EAC  L +   L+++LL + ++
Sbjct: 744 LPENSPVHGAIGRPANTKQVAKCSAAFEACLNLRKGKHLDEYLLSTFKD 792



 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 123/317 (38%), Gaps = 56/317 (17%)

Query: 1009 PELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT- 1067
            PE L    +P  +V   Y  P+++ R+ES ++A +      C   +  I + L LE +T 
Sbjct: 1065 PEPLTISALPTRIVAMAYTFPAIIHRIESYLVAVEA-----CSMLHLPISADLALECMTK 1119

Query: 1068 -TLGCCE------------SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSW 1114
             T    E              + ERLE LGD  LK A S  L+  +P  +E     +R  
Sbjct: 1120 DTRNTDEHGEEQVEFQRGMGNNYERLEFLGDCFLKMATSISLYTLHPDSNEFDFHVKRML 1179

Query: 1115 AVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFT 1174
             +CN  L  +    KL  +IR  AF+ R W   G L L+                GK   
Sbjct: 1180 MICNKNLMDVALQLKLYEFIRSQAFNRRAWYPEG-LVLK---------------KGKAAQ 1223

Query: 1175 QDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYV----GGGLIAALYMMKWLGIDADL 1230
               K          H+ +G KTIAD +EALIGA  +    G  +  A+  +  L    D 
Sbjct: 1224 APKK----------HK-LGDKTIADVSEALIGAALLTPSNGHAMDHAVRAVTELVYSTDH 1272

Query: 1231 EVSLVDDCITRASLRSY------VPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY 1284
             +   +D     +   Y        + N  + IE    Y F    LL+ A TH S    Y
Sbjct: 1273 AIEKWEDYFKGYTKPKYQIAASTASQRNVAEQIEITHNYHFHYPRLLRSAFTHPSYPFAY 1332

Query: 1285 CYQNLYKHLQHCSTLLL 1301
                 Y+ L+     LL
Sbjct: 1333 ERVPNYQRLEFLGDSLL 1349


>gi|260831340|ref|XP_002610617.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
 gi|229295984|gb|EEN66627.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
          Length = 1760

 Score =  271 bits (693), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 211/695 (30%), Positives = 331/695 (47%), Gaps = 90/695 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA---QAIKSNGFKKLIIFLA 100
           F PR+YQ+++ + A  +NTI  L TG+GKT +AVMLIK+++   +A  S+G K+   FL 
Sbjct: 10  FTPRLYQMELLDAALEKNTIVCLGTGSGKTFVAVMLIKELSSQTRAALSDGGKR-TFFLV 68

Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
             V LV QQ  VI  HT+  + EY GA GVD W    WQ+E + + VLVMT QI LD L+
Sbjct: 69  NNVPLVSQQAAVITTHTNLSIGEYVGAMGVDLWTRDRWQQEFDTHHVLVMTAQIFLDILQ 128

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSA 219
             FL L  V  ++IDECHHA G+HPY +IMK F   +  + P+V G+TAS  + +G  + 
Sbjct: 129 HGFLPLSKVNLLIIDECHHAVGHHPYREIMKTFDTCQVQDYPRVLGLTAS--ILQGKCAP 186

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
                ++  LE TL S   T  D   ++ +     E             +  G  +   +
Sbjct: 187 DSLFQRVRNLEVTLRSSAETATDLVGVDRYTTQPNEVV----IESGPAQNEPGLSQALQT 242

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHK-TLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338
             D +L+ +   ++    +  ++    + KQ       IL  L       A   +   LE
Sbjct: 243 LVDDALAFISSCKVRVSVEEGERDPCQVPKQAIQECRAILEVLGTWATRRAAILINRELE 302

Query: 339 KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTK 398
           K++K         + S Q + FL  V  V+     L D+ F D      + VD+ +++ K
Sbjct: 303 KLIK--------HEWSEQHQLFLRWVHTVMHHVHLLCDEAFKDV-----EDVDVQFVTPK 349

Query: 399 LHELLQLFLSF------------------------------------GKSTQVLCIIFVE 422
           +  LL++                                          S Q+  I+FVE
Sbjct: 350 VRRLLEVLRECKPNEVQSDNSKSVSNMNSKNHYHSSRRRDNLDNQDPNTSFQLCGIVFVE 409

Query: 423 R----IIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTP-------KVQKEVLESFR 471
           R    ++  K+++ F K  P L +++ + +TG   S   +         + Q+E+L  FR
Sbjct: 410 RRYTAVVLNKLLQEFAKSDPDLAYISSSCITGHGLSSRGMRSRETEMAFRRQEEILRRFR 469

Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE---- 527
             + NLL  T V+EEG+ VP C+ V+RFDLPK   SY+QS+GRAR   S ++++++    
Sbjct: 470 MHENNLLIGTSVVEEGVDVPKCNLVVRFDLPKDYRSYVQSKGRARAQGSHYVMLVQQHEL 529

Query: 528 ---RGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVEST--GASVT 582
              + +L Q   +  I+R + +  +       E  +   C  +    Y+      G  VT
Sbjct: 530 DSFKEDLVQFKGIEKILRQKWAEHEVPKE---EEIWEHLCDDM-VPPYMPRQVDGGPRVT 585

Query: 583 TDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQT-IVGPT 637
             S++ L++RYC  LPSD +    P  +  S  +A    Y   L LP N+  +  I GP 
Sbjct: 586 MTSAIGLVNRYCSKLPSDVFTHLTPKSRVDSVSDADGNKYMATLYLPINSSLRDPIQGPV 645

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE 672
              + L+++ V L+AC+ LHQ G L+D+LLP  +E
Sbjct: 646 MPTRRLAEKAVALKACQLLHQAGELDDNLLPVGKE 680



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 90/201 (44%), Gaps = 37/201 (18%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            SLIL+ALT     + F++ERLE +GDS LK+A++  L+ TY + HEG+LS  RS  V N 
Sbjct: 1231 SLILQALTLSNAGDFFNLERLETIGDSFLKHAITTFLYCTYSRVHEGKLSYMRSRQVSNL 1290

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPG------------------------------ 1148
             L++LG  + L   +  S FDP   W+ PG                              
Sbjct: 1291 NLYRLGKRKGLASRMVASIFDPAVNWLPPGFCIQNNREDKEDAGSSSKDSSLDVEPGGNG 1350

Query: 1149 -QLSLRPVPCECGVDTLEVPLDGKFFTQD--TKVVVGKPCDMGHRWMGSKTIADCAEALI 1205
               S  P+    G D    PL           K ++     M H  +  K+IADC EAL+
Sbjct: 1351 MTTSKNPIAQVTGYDV--TPLKASVLVNGDAIKRLLSYDLHMEH-CIADKSIADCVEALL 1407

Query: 1206 GAYYVGGGLIAALYMMKWLGI 1226
            G Y    G  AA   + WLG+
Sbjct: 1408 GCYLTTCGPRAAQLFLCWLGV 1428



 Score = 57.0 bits (136), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 10/93 (10%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKALGD+ ES+ GA+ +D+ ++L+ VWR++  ++ P++     ++P  P+REL+E+    
Sbjct: 1648 PKALGDVFESVAGAIYLDSGMSLETVWRVYYRMMKPLIDKFSAKVPRSPVRELLEMEPET 1707

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ 1417
              F     T  G     ++R+    V ++G+GQ
Sbjct: 1708 AKFSPSERTYDG-----KVRVT---VTVIGKGQ 1732



 Score = 44.3 bits (103), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 943  DSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGSGKGSKSGMNTKK 1000
            D  TF  Y+ ++YG  + +  QPLL +  + +  NLL   + N  G +   S +     K
Sbjct: 926  DYATFDEYYLKRYGEAITNLDQPLLDVDHTSSRLNLLTPRHLNQKGKALPTSSAETRKAK 985

Query: 1001 P---QMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
                Q    + PEL     VP S+ +    LPSV+ R+ +L++A +LR +I
Sbjct: 986  RENLQSKQILVPELCEIHPVPASLWRKAVCLPSVLYRVTTLLIAEELRVQI 1036


>gi|327259080|ref|XP_003214366.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Anolis
           carolinensis]
          Length = 1915

 Score =  269 bits (687), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 221/729 (30%), Positives = 355/729 (48%), Gaps = 95/729 (13%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+LIK+++  I+ +  K  K  +FL  
Sbjct: 32  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLIKELSYQIRGDFNKNGKRTVFLVN 91

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + +LV QQ   +R H+D +V EY   +  + W  + W +E +K  VLVMT Q+ L+ L++
Sbjct: 92  SANLVAQQVSTVRTHSDLKVGEYSSLEITETWTKERWNQEFDKYQVLVMTCQVALNILKR 151

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
             LSL  +  ++ DECH A  +HPY  IMK       + P++ G+TAS  +  G     +
Sbjct: 152 EHLSLSNINLLIFDECHLAIQDHPYRAIMK-LCESCPSCPRILGLTAS--ILNGKCDPSE 208

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S   + E  T++ V      + C        CG  +D  G  E   +
Sbjct: 209 LEEKIQKLEKILKS---SAETATDLVVLDRYTSQPCEIVVD---CGPYTDKSGLYERLLT 262

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + D +LS L    ++ +    D     ++ LSD  A +L    +C D++  +   E    
Sbjct: 263 ELDDALSFLNDCNISVHCRERDSTLISKQILSDCRAVLLVLGPWCADKVAGMMVRE---- 318

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 319 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 373

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 374 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKTETNFPSPFTNILC 433

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 434 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEVEFRKQEE 493

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 494 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 553

Query: 526 LERG-------NLKQRNKLFDIIRSE--RSVTDTALSRDPEACFLKACTYVKTKSYIVES 576
            +         +LK    +  I+R++  +SV +     +P    +             E 
Sbjct: 554 ADSDKIKHFEEDLKTYKAIEKILRNKCSKSVDNNETESEP---IIDDDDIFPPYVLRSED 610

Query: 577 TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKS-AEEAYECELTLPSNAPFQ-TIV 634
            G  VT ++++  I+RYC  LPSD +    P  K +   +  +   L LP N+P + +IV
Sbjct: 611 GGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDNTFYSTLYLPINSPLRVSIV 670

Query: 635 GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-A 689
           GP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  
Sbjct: 671 GPPMGCTRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRP 730

Query: 690 GTTKRKELH 698
           G+TKR++ +
Sbjct: 731 GSTKRRQCY 739



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1291 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1350

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1150
            L++LG  + L   +  S FDP   W+ PG +
Sbjct: 1351 LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYI 1381



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW ++ P++ P++      +P  P+REL+E+    
Sbjct: 1798 PKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1857

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1858 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1909

Query: 1441 KRI 1443
             ++
Sbjct: 1910 PQV 1912



 Score = 44.7 bits (104), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 952  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1011

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1012 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQ 1070


>gi|327259078|ref|XP_003214365.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Anolis
           carolinensis]
          Length = 1918

 Score =  269 bits (687), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 221/729 (30%), Positives = 355/729 (48%), Gaps = 95/729 (13%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+LIK+++  I+ +  K  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLIKELSYQIRGDFNKNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + +LV QQ   +R H+D +V EY   +  + W  + W +E +K  VLVMT Q+ L+ L++
Sbjct: 102 SANLVAQQVSTVRTHSDLKVGEYSSLEITETWTKERWNQEFDKYQVLVMTCQVALNILKR 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
             LSL  +  ++ DECH A  +HPY  IMK       + P++ G+TAS  +  G     +
Sbjct: 162 EHLSLSNINLLIFDECHLAIQDHPYRAIMK-LCESCPSCPRILGLTAS--ILNGKCDPSE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S   + E  T++ V      + C        CG  +D  G  E   +
Sbjct: 219 LEEKIQKLEKILKS---SAETATDLVVLDRYTSQPCEIVVD---CGPYTDKSGLYERLLT 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + D +LS L    ++ +    D     ++ LSD  A +L    +C D++  +   E    
Sbjct: 273 ELDDALSFLNDCNISVHCRERDSTLISKQILSDCRAVLLVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKTETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEVEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERG-------NLKQRNKLFDIIRSE--RSVTDTALSRDPEACFLKACTYVKTKSYIVES 576
            +         +LK    +  I+R++  +SV +     +P    +             E 
Sbjct: 564 ADSDKIKHFEEDLKTYKAIEKILRNKCSKSVDNNETESEP---IIDDDDIFPPYVLRSED 620

Query: 577 TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKS-AEEAYECELTLPSNAPFQ-TIV 634
            G  VT ++++  I+RYC  LPSD +    P  K +   +  +   L LP N+P + +IV
Sbjct: 621 GGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDNTFYSTLYLPINSPLRVSIV 680

Query: 635 GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-A 689
           GP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  
Sbjct: 681 GPPMGCTRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRP 740

Query: 690 GTTKRKELH 698
           G+TKR++ +
Sbjct: 741 GSTKRRQCY 749



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1294 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1353

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1150
            L++LG  + L   +  S FDP   W+ PG +
Sbjct: 1354 LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYI 1384



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW ++ P++ P++      +P  P+REL+E+    
Sbjct: 1801 PKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1860

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1861 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1912

Query: 1441 KRI 1443
             ++
Sbjct: 1913 PQV 1915



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQ 1073


>gi|426200573|gb|EKV50497.1| hypothetical protein AGABI2DRAFT_64825 [Agaricus bisporus var.
           bisporus H97]
          Length = 1717

 Score =  268 bits (685), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 208/684 (30%), Positives = 332/684 (48%), Gaps = 91/684 (13%)

Query: 35  PSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK 94
           P ++T S    PR YQ ++FE A++ N I  L TG+GKT+I ++LIK ++ A++S+G  K
Sbjct: 6   PIANTTS-ELRPRKYQEEIFERAQKENVITALNTGSGKTLIGLLLIKWMS-ALESSG-DK 62

Query: 95  LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
           LIIFL P V LV QQ   +R +T    E+ YGA  +   D   W+K++ K DV+VMTPQI
Sbjct: 63  LIIFLVPRVALVEQQAKYLRDNTPLRTEKLYGALDISLSDRMQWKKKLGKCDVIVMTPQI 122

Query: 155 LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--KSDNKPKVFGMTASPVV 212
           L++ +  +  SL  +  +V DECHHA  NHPY  IM+E+++  + +++PK+FGMTASP  
Sbjct: 123 LVNFITHSIWSLRQIALLVFDECHHARKNHPYNIIMQEYFYIKEVEDRPKIFGMTASP-- 180

Query: 213 RKGVSSAMDCEGQISELESTLDSQVFTIEDKT-EMEVFVPSAKESCRFY----DQSKFCG 267
              V +  D  G +  LE+ LDS + ++ +   E+ V  P   E    +    D   F  
Sbjct: 181 ---VWNTKDPVGSLLTLETNLDSVIISVREHVDELAVHTPRPSELITIFPAPPDNYDFHD 237

Query: 268 SDLKGKLEV----SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
            +    L V    +W   + + S L                 +R      H   LY    
Sbjct: 238 PNFLRCLSVISPATWEHLEVAWSSL----------------VMR------HDATLY---N 272

Query: 324 LGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC--KYFLEEVLHVIGSALP-------- 373
           LG  CA   + + +  VLK+        Q+ L+      +E V +V G++ P        
Sbjct: 273 LGPYCASLFLYLEVRHVLKSV-------QTGLRTIEDTKMEVVEYVAGASAPKRNPPEEL 325

Query: 374 -LADKIFLDF-GFDYSK--------AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVER 423
            L   I LDF GF +           V L + S K+  L ++ L F  +     I+FVE+
Sbjct: 326 NLIRDILLDFEGFFWRNDCPNRVPIPVPLKWCSPKVDALKRILLEF-YTPNFQVIVFVEQ 384

Query: 424 IIAAKVVERFVKKVPFLT-HLTVAYLTGSTTSVDAL---TPKVQKEVLESFRGGKVNLLF 479
              A  + + +  +P L   +  A+L G   + D +   T     + +++FR G+VN+L 
Sbjct: 385 RQVAACLSKILPVIPGLEGKIRSAHLVGQGVNSDGVSKATDTYHGDAIQAFRKGEVNVLI 444

Query: 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           AT V EEG+  P C  V+RFD  + +  Y+QSRGRAR  +S+FI+M+ + +        +
Sbjct: 445 ATSVAEEGLDFPACDLVVRFDPFRHMVGYVQSRGRARNADSRFIVMIRQDDQVSFEFYQN 504

Query: 540 IIRSERSVTDTALSRDPEACFLKA-------------CTYVKTKSYIVESTGASVTTDSS 586
           ++  E  +      R   A  + A                   + Y+V ST A ++ DS+
Sbjct: 505 LLAQEPEMNKAYQGRQRAAVTMPAQQEDEDEEEDLNPLDLASRERYVVPSTEAVLSYDSA 564

Query: 587 VNLIHRYCEMLPSDKYYTP-KPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSK 645
           + L++  C ++P D Y  P KP F     +   +  L++P      T  GP   +K  +K
Sbjct: 565 IGLLNYLCALIPCDAYTPPHKPKFT-GDFQSTVQLPLSIPLPPDQLTYTGPLKCSKKEAK 623

Query: 646 QLVCLEACEKLHQVGALNDHLLPS 669
           + V   A ++LH++   + +LLP+
Sbjct: 624 RAVAFLAVKRLHELDIFDQYLLPT 647



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 170/429 (39%), Gaps = 90/429 (20%)

Query: 1015 VDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCES 1074
            VD+   V++   +LP++  ++     A   R  I        IP  L++EALT       
Sbjct: 924  VDMSPDVIRGFEILPTLCHKITDAYRAQSTRLNIGLP----FIPDDLLMEALTLPNVDAD 979

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
            FS +RLE LGD+VL    + HL   YP++HEGQLS  R+  V N  L       +L+ +I
Sbjct: 980  FSNQRLETLGDAVLDICTTVHLMFKYPRRHEGQLSTLRAGRVSNKFLVSCARTVELERFI 1039

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
                    +W         P   + G +  E+        ++ K V         R +  
Sbjct: 1040 SSEKMGVEKW---------PFVEQKGYEVKEI--------RNRKSV--------KRQIPR 1074

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSY-VPRINE 1253
            + + DC EAL+GA ++ GG+  AL      G+         + C  RA  R   VP +  
Sbjct: 1075 RGLQDCVEALLGASFLAGGIPMALRTGVCFGLSFGGIQPWGERC-RRAEAREIGVPAL-- 1131

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHASVQ----------EF------------YCYQ---- 1287
            +  +E +IGY F    LL EA+TH S++          EF            Y Y     
Sbjct: 1132 VAGLEKEIGYVFENPELLVEAVTHPSLEFSSTPSYQRLEFLGDSVIKMLVTEYLYHKFPK 1191

Query: 1288 ---------------------------NLYKHLQHCSTLLLSQITEYVKSF--PKPGETT 1318
                                       +++K+L   S  L + I  YV         E  
Sbjct: 1192 ATSHQLALPRTKAICSPALAHIAIRKLHIHKYLLQNSIDLNNAINLYVPVLESATADEIV 1251

Query: 1319 DSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRE 1376
              G     PKA+ D  ES+VGAV +D   +LD    I   ++  I+      +P  P+ E
Sbjct: 1252 RRGWRYDPPKAISDAFESVVGAVFVDVGYDLDRTGGIVCRLMEDILEVLNPSIPKDPVSE 1311

Query: 1377 LIELCDSLG 1385
            ++E   S+G
Sbjct: 1312 VLEWLASVG 1320


>gi|390598592|gb|EIN07990.1| hypothetical protein PUNSTDRAFT_144457 [Punctularia strigosozonata
           HHB-11173 SS5]
          Length = 1435

 Score =  268 bits (684), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 202/672 (30%), Positives = 324/672 (48%), Gaps = 54/672 (8%)

Query: 32  VDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNG 91
           +DG  S T S   +PR YQ ++F  A+  N IA L+TG+GKT I+ +L+K IA   K   
Sbjct: 1   MDGIDSLTVSDQLLPRRYQEEIFVRAQEGNIIAALDTGSGKTFISTLLMKWIAS--KPAE 58

Query: 92  FKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMT 151
             K+IIFL P V LV QQ   I   T   V + YGA   D  D   W+++   +DV+VMT
Sbjct: 59  SSKIIIFLVPKVPLVEQQATFIERQTPLRVGQCYGANAWDLTDRGAWRRQFAASDVIVMT 118

Query: 152 PQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN-KPKVFGMTASP 210
            QI L+ +  +  S+D V  +V DECHH   NH Y  IM+E++    + +PK+FGMTASP
Sbjct: 119 AQIFLNLITHSHWSMDRVSLLVFDECHHTRKNHAYNGIMREYFQCPGHLRPKIFGMTASP 178

Query: 211 VVRKGVSSAMDCEGQISELESTLDSQVFTI-EDKTEMEVFVPSAKESCRFYDQSKFCGSD 269
                + +  D    ++ LE  +D++VF + E ++E+   +P  KE    Y         
Sbjct: 179 -----IWNPKDAATSLATLEKNMDAKVFAVREHESELLSIIPKPKEVLVDYPPPPDSYPT 233

Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
               L  +       L+ L  +       ++ ++ +  + L  + A+     +    I A
Sbjct: 234 YPSPLLAN----SIDLTILPPAMELPLDKIETRYHSAHQILGPFGAEYYLWAEVKQRIAA 289

Query: 330 YEAVKI------CLEKVLKAQE----ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
           Y  +++       LE +  A        E +  S          VL      L  AD + 
Sbjct: 290 YMLLQMEARRDEILEDMTNAMALDSPPIETHHSSPSAVLSSTNAVLDKFAPLLGDADSVD 349

Query: 380 LDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
            D        +D+ + + ++  L +  +S  K T    I+FVE+   A  + R + ++P 
Sbjct: 350 PDV---VQIDIDIEWCTPQVAALAETLISHYKPT-FQGIVFVEQRHIAVALARLLGRLPE 405

Query: 440 LT-HLTVAYLTG----STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
           L   +  A L G    +T ++  +  + Q++V+ +FR G++NLL AT V EEG+  P C 
Sbjct: 406 LRGRVRCADLVGHGGQTTANLKGMEIQGQQDVVRAFRRGEINLLVATSVAEEGLDFPACD 465

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQ--RNKLF--------DIIRSE 544
            VIRFD  + +  Y+QSRGRAR H S F++M+ RG+ +   R + F         I +++
Sbjct: 466 LVIRFDPLQHMVGYLQSRGRARHHTSTFVIMVPRGSEQHIMRYRTFADSEPQMKQIYQTQ 525

Query: 545 RSVTDTALSRDPEACFLKACT----YVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSD 600
            ++   +   D E    +         + + Y++ ST A +T  S++ ++   C ++P D
Sbjct: 526 NALEQLSAESDTEEGECEEPEHPEDLAERERYVIPSTLAVLTYHSAIGMLSHLCSLIPRD 585

Query: 601 KYYTPKPIFKYKSAEEAYECELTLPSNAPFQ----TIVGPTSRNKNLSKQLVCLEACEKL 656
           +Y    PI + K   E ++  L LPS+ P      T VGP  R+K  +K      A  KL
Sbjct: 586 RY---TPIHQPKYTGE-FQVTLQLPSSLPLPPEDLTFVGPLKRSKREAKCAAAFMAVRKL 641

Query: 657 HQVGALNDHLLP 668
           HQ+G  +D+LLP
Sbjct: 642 HQLGVFDDYLLP 653



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 147/370 (39%), Gaps = 57/370 (15%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKY---GIVLIHPGQ-PLLRLKQSHNPHNLLVNFNDGGGSG 989
            +P  G+ +    T+  YF  K+   GI L+ P   PL  +       N     +  G   
Sbjct: 836  TPPPGSRESTHPTYREYFLHKWSRKGITLVIPDDTPLAEVCMVTRRTNSSYPLHPAGT-- 893

Query: 990  KGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEIN 1049
            + S   +      M V  P   L R+ +   + ++ +LLP ++ R+  L    + ++E+ 
Sbjct: 894  EFSPEPLFAASKSMVV--PFAFLRRLHMSAYLWRTFHLLPRLLHRVTDLYRVQRAKQELG 951

Query: 1050 CHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLS 1109
                   IP  L++EA T       FS +RLE LGDSVLK  V  HL   + ++HEGQL 
Sbjct: 952  LPP----IPDDLLVEAYTLPHTGAGFSNQRLETLGDSVLKLCVIVHLLNRFRRRHEGQLD 1007

Query: 1110 ARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRW--VAPGQLSLRPVPCECGVDTLEVP 1167
            A R  AV N TL        L  Y+       R W  V P              +    P
Sbjct: 1008 ALRRNAVANRTLLARAHAIGLGSYLTCETMSVRTWRHVVP--------------EEQHTP 1053

Query: 1168 LDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLG-- 1225
             D    T   + V         R +  + + DC EA +GA ++GGG+  AL     LG  
Sbjct: 1054 FD----TTSARFVA--------RSIPRRCLQDCMEATLGAAFLGGGIPMALQAGTVLGMS 1101

Query: 1226 ----IDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281
                +  +L         T A+L            ++  + Y+F    LL EA TH S +
Sbjct: 1102 LGGPVPWNLRYGRKPIGKTPAAL---------FHRVQEALHYDFHNGDLLIEASTHPSFE 1152

Query: 1282 E--FYCYQNL 1289
               F  YQ L
Sbjct: 1153 SGTFGSYQRL 1162



 Score = 42.7 bits (99), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 1076 SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            S +RLE LGD+++   V  +L+  +P+   GQLS  RS AVC+ T+
Sbjct: 1158 SYQRLEFLGDALIDLVVMQYLYRKFPEGTPGQLSWARSRAVCSQTM 1203


>gi|255953957|ref|XP_002567731.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589442|emb|CAP95586.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1495

 Score =  268 bits (684), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 238/840 (28%), Positives = 381/840 (45%), Gaps = 91/840 (10%)

Query: 2   HSPLNSLKRSFGEVHSPNPPDMGSSG-HDHAVDGPSSSTNSIN--------FIPRIYQLK 52
           H   N++  +  E H  N P  G +G H    D   S+   +           PR YQ++
Sbjct: 26  HRAQNAMFTALLEEHVVNGPSNGPNGAHIELSDAELSTARLLANTEPGGGVLDPREYQIE 85

Query: 53  VFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA---IKSNGFK-KLIIFLAPTVHLVHQ 108
           +FE A+  NTIAVL+TG+GKT++AV+L+K I Q     ++NG K ++  FL  +V LV Q
Sbjct: 86  LFERARASNTIAVLDTGSGKTLVAVLLLKHILQIELNKRANGRKPRVAFFLVDSVTLVFQ 145

Query: 109 QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI 168
           Q  V+R + D  V  +YG  G D WD Q W K + K  V+V T +IL  +L    + +D 
Sbjct: 146 QSAVLRNNLDQSVGHFYGNLGPDLWDQQTWDKHLEKYMVIVCTAEILNHSLLNGHIGIDQ 205

Query: 169 VCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSAMDCEGQI 226
           +  ++ DE HHA   HPY +I+++ Y K+D   +P++FGMTASPV  K      D     
Sbjct: 206 INLLIFDEAHHAKKEHPYARIIRDSYLKADPGKRPRIFGMTASPVDAK-----CDIAEAA 260

Query: 227 SELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLS 286
            +LE+ L+ ++ T  D   +  FV    E    YD+       L   LE          +
Sbjct: 261 MQLETLLNCRIATTSDLALLRNFVNKPIEEEWVYDK-------LPLPLE----------T 303

Query: 287 KLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE 346
            L  +    Y DM       R       A +     ELG  CA +   + L   +  + E
Sbjct: 304 HLHSTLKTKYGDMPILEGAFR------FASV--ASSELGSWCADQVWALALSDEVLPKLE 355

Query: 347 CEIYR--QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF---DYSKAVDLGYISTKLHE 401
             + +  +S  Q      E +  I  A  L  +   +  F   D S  V+L  +  KL E
Sbjct: 356 GSVGKASESDPQDSEKASEEIKRIQEANQLVKEYIANQTFTPSDLSSKVEL--LMRKLQE 413

Query: 402 LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDAL--- 458
                  F KS    CI+F +R   AKV+ +  +K+ F  +L    L G     DAL   
Sbjct: 414 ------QFAKSPDTKCIVFTQRRNTAKVLLQLCEKLQF-PNLRPDVLVGVRKG-DALGMN 465

Query: 459 -TPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
            T + Q  VL  FR  ++N LFAT V EEG+ +P+C+ V+RFDL  TV  Y+QSRGRAR+
Sbjct: 466 STFRRQFLVLVKFRKSEINCLFATSVAEEGLDIPDCNLVVRFDLYDTVIQYVQSRGRARR 525

Query: 518 HNSQFILMLERGNLKQRNKLFDIIRSERSVT--------DTALSRDPEACFLKACTYVKT 569
            +S +  M+E GN     +L ++ R+E  +         D  L RD     +      + 
Sbjct: 526 ADSVYATMVECGNRNHSTRLQEVRRAEHLMKNFCNLLPEDRKLYRDDHDMGVLIHQEDRK 585

Query: 570 KSYIVESTGASVTTDSSVNLIHRYCEML---PSDKYY----TPKPIFKYKSAEEAYECEL 622
           ++Y + STGA +T   ++ ++ R+   L   P  + Y    +    +   S  E++ CE+
Sbjct: 586 RTYTIPSTGAMLTYRHAIGVLARFASSLLTVPKSQQYENEISASVTYIVMSENESFSCEI 645

Query: 623 TLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKK 682
            +P  +P + ++G +   K+L+KQ    +AC  L +   L++H          N++  K+
Sbjct: 646 IMPEKSPVRRVLGCSEPKKSLAKQSAAFDACLLLRKRNLLDEHF---------NSVYHKR 696

Query: 683 NESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVI---LHAYKFNFACSIVTEIYSGFVL 739
             ++  A      +      +R     W  + G I   L+A       S       G ++
Sbjct: 697 LPAMRNAKLAITSKKTDQYRMRTKPSIWARQQGTIPTRLYAIVIRLIPSEPLTRAHGSIV 756

Query: 740 LIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLF 799
           L+  E    +  F + L    +T   ++   G + + ++++     F    F+ +F K +
Sbjct: 757 LLTRERIAAIPTFPVFLDDDIETTVQSLCIDGCLEVASEELETLTAFTLAVFHDVFHKTY 816



 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 164/439 (37%), Gaps = 112/439 (25%)

Query: 1009 PELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQ--------------LREEINCHSRN 1054
            P+ L    +P+SV  +  + P+++ R+ES ++A +                E     S N
Sbjct: 970  PQPLAISAIPMSVAATCLVFPAIISRMESYLIAQEGCKMLDLGDIKLEYALEAFTKDSDN 1029

Query: 1055 FHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSW 1114
                 SL +     +G     + ERLELLGDSVLK A S  LF   P   E      R  
Sbjct: 1030 TEEHRSLQIHVQRGMGK----NYERLELLGDSVLKMATSISLFAQNPDDDEYDYHVNRMC 1085

Query: 1115 AVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFT 1174
             +CN  L K   + KL  YIR   F    W  PG LSL     E G D        KF  
Sbjct: 1086 LICNKNLFKNAIELKLYEYIRSRGFSRHMWYPPG-LSL-----EYGRD------HAKFID 1133

Query: 1175 QDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG----LIAALYMMKWLGIDADL 1230
             +           G   +  KTIAD  EALIGA  + GG       A+  +       + 
Sbjct: 1134 SE-----------GKHSLAEKTIADVCEALIGASLLSGGDDNRYDMAIKAVTIFVNSQNH 1182

Query: 1231 EVSLVDDCITRASLRSYVPRI------NEIKDIESKIGYEFTVKFLLQEAITHASVQEFY 1284
              +   D I+  S+  Y  R       N  + I  K+GY+F    LL+ A TH S    +
Sbjct: 1183 TATSWKDYISAYSIPLYQNRAPDGFEKNLARQIFEKVGYDFKYPRLLRSAFTHPSYPLAW 1242

Query: 1285 ----CYQN--------------------------------------------------LY 1290
                CYQ                                                   L+
Sbjct: 1243 AKVPCYQRLEFLGDALLDMVCVEHLFHRFPNRDPQWLTEHKMAMVSNKFLGALAVKLGLH 1302

Query: 1291 KHLQHCSTLLLSQITEYVKSFPKPGETTDSG------PSMKAPKALGDLLESIVGAVLID 1344
             HLQH S  L+ Q ++Y +   +  E+  +G       +  +PK L D+LE+ +GA+ +D
Sbjct: 1303 LHLQHFSNPLMIQNSKYAEEI-QLAESESNGEVDYWLSTSDSPKCLPDMLEAYLGAIFVD 1361

Query: 1345 TKLNLDEVWRIFKPILSPI 1363
            +  +   +   F+  + P 
Sbjct: 1362 SGFDFTVIEAFFQRHILPF 1380


>gi|452839019|gb|EME40959.1| hypothetical protein DOTSEDRAFT_56023 [Dothistroma septosporum
           NZE10]
          Length = 1549

 Score =  267 bits (682), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 198/663 (29%), Positives = 329/663 (49%), Gaps = 87/663 (13%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++FE AK+ NTIAVL+TG+GKT+IAV+L++    D  +   +    K+  FL  
Sbjct: 101 PREYQLELFERAKKENTIAVLDTGSGKTLIAVLLLRSVIDDELEKRAAGHAPKISFFLVA 160

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V LV+QQ+ V+  + D +V    GA  VD W +  W +  ++N V+V T  IL   L +
Sbjct: 161 SVTLVYQQFSVLDCNLDHKVIRLCGADNVDRWTAAHWTQIFHENKVVVCTADILFQCLSR 220

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKSDNKPKVFGMTASPVVRKGVSSA 219
           +FLS+  +  ++ DE HH   NH Y +I+K+FY   + + +P++FGMTASP     + + 
Sbjct: 221 SFLSMKQINLLIFDEAHHTKKNHAYARIIKDFYIPEQRELRPRIFGMTASP-----IDAK 275

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG-----SDLK--- 271
           +D     SELES LD ++ T +D +  E      +E  R+    + C       DLK   
Sbjct: 276 VDVIQAASELESLLDCKIATTQDMSLAEAIKRPTEEILRYDALPQRCFETSLLQDLKSRY 335

Query: 272 GKLEVSWSKFD--ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           G +EV  S F   A +++  G                            +C D   L+ A
Sbjct: 336 GNIEVFASSFQRAAEVARHLGR---------------------------WCADNF-LLHA 367

Query: 330 YEAVK-----ICLEKVLKAQEECEIYRQSSLQCKYFLEEV---LHVIGSALPLADKIFLD 381
           +   K     + +EK   A++     RQ   +    ++E+    H I     + D++   
Sbjct: 368 FSHEKSSKYSVEVEKKWHARKG----RQKVAELDEAVKEIQAATHYIQQRSHVLDEL--- 420

Query: 382 FGFDYSKAVDLGYISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV--- 437
                S+  DL   S+K+ +L   L L F + +    I+FV+R   A+++     ++   
Sbjct: 421 -----SRTQDL---SSKVRQLDHYLRLQFERESTHRAIVFVDRRYTARLLHNLYTRLRGQ 472

Query: 438 PFLTHLTVAYLTGS---TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
               +L   +L GS   +   D+ + + Q   L  FR G++N LFAT V EEG+ VP+C+
Sbjct: 473 EGYEYLRGHFLIGSNGGSIDEDSFSFRQQVMTLMKFRKGELNCLFATSVAEEGLDVPDCN 532

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSV------- 547
            VIRFD+  T+  Y+QSRGRAR  +S+FI M+E GN   +  L ++   E S+       
Sbjct: 533 LVIRFDMYNTMIQYVQSRGRARNQHSKFIHMIENGNCAHQQTLGEVRWQENSMRRFCDQL 592

Query: 548 -TDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPK 606
             D  L  + +   +        +  IV STGA +T  ++++ I  +   +P+D      
Sbjct: 593 PEDRKLQGNEDHLEMLLDKEKNIQVRIVPSTGAKLTYGNALDYIANFVSAIPTDCDEPQH 652

Query: 607 PIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL 666
           P ++  +  + ++ E+ LP+NAP ++++G     K L+K+     AC +L ++G  + + 
Sbjct: 653 PTYEVMARGQKFQAEVMLPNNAPLRSVMGAVHAKKGLAKRSAAFNACIELLKLGYFDAYF 712

Query: 667 LPS 669
           LP+
Sbjct: 713 LPT 715



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 137/359 (38%), Gaps = 65/359 (18%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P  V   L++ P+++ R ES +++ +      C+           L A T         
Sbjct: 1007 IPPEVAAPLFIWPAIIYRFESHLISQE-----GCNVVGVDCGPEFALAAFTKDSDNSGEH 1061

Query: 1068 --------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
                      G  E++  ER E +GD+ LK A +   F+  P ++E +   RR   +CN 
Sbjct: 1062 EVEERVNFQRGMGENY--ERFEFIGDTFLKTATTLSTFILNPNENEFEFHVRRMLMLCNK 1119

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKV 1179
             L +     KL  YIR   F+ R W   G   L       G               + KV
Sbjct: 1120 NLFQTAMGLKLYEYIRSLPFNRRLWYPEGMKLLAGTGVVKG---------------EEKV 1164

Query: 1180 VVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKW---------LGIDADL 1230
            +  +P D     +G KTIAD  EALIGA ++            W         L  + D 
Sbjct: 1165 MWHQPRDHP---LGEKTIADVCEALIGAAFIAHDCPGDWKPEHWESAIRAVTKLVNNDDH 1221

Query: 1231 EVSLVDDCITRASLRSYVPRINEI----KDIESKIGYEFTVKF----LLQEAITHASVQE 1282
            ++   +D   +A+      ++ E     KD+  K+  E   +F    LL  A  H S+  
Sbjct: 1222 KMQTWED--YKAAYAKPAYQMQEATAVQKDLADKVELEHLYRFQYPRLLYSAFVHPSLPF 1279

Query: 1283 FYCYQNLYKHLQHCSTLLL--SQITEYVKSFP--KPGETTDSGPSMKAPKALGDLLESI 1337
             Y     Y+ L+     LL  + I+     +P   P   T+   +M + K LG L  +I
Sbjct: 1280 MYEKVPNYQRLEFLGDALLDMASISYLFYKYPDKDPQWLTEHKMAMVSNKFLGALCVNI 1338



 Score = 43.9 bits (102), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 1289 LYKHLQHCSTLLLSQITEY----VKSFPKPGETTDSGPSMK-APKALGDLLESIVGAVLI 1343
             +KHL+H    L  Q+ EY    +++    G++ D   ++   PK L D++ES VGA+ I
Sbjct: 1340 FHKHLRHHHAKLEHQVREYAIELLEAKRVAGDSRDYWTTVSDPPKCLPDIIESYVGALFI 1399

Query: 1344 DTKLNLDEVWRIF 1356
            D+  N  EV R F
Sbjct: 1400 DSDFNYAEVQRFF 1412


>gi|336367926|gb|EGN96270.1| hypothetical protein SERLA73DRAFT_112480 [Serpula lacrymans var.
           lacrymans S7.3]
          Length = 1460

 Score =  266 bits (681), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 201/684 (29%), Positives = 322/684 (47%), Gaps = 86/684 (12%)

Query: 41  SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLA 100
           S + +PR YQ ++F  A+  N IA L+TG+GKT I+++LIK I   ++    +K+I+FL 
Sbjct: 12  SESILPRRYQEEIFRRAQNSNVIAALDTGSGKTFISILLIKWIV--LQEKAKRKVIVFLV 69

Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
           P V LV QQ D I  HT   V+ ++G+  +D  D   W+K   ++DV+VMT QI L+ L 
Sbjct: 70  PKVALVKQQADSIAAHTPLRVKMFHGSLDLDLTDRANWKKSFEQSDVVVMTAQIFLNILT 129

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-SDNKPKVFGMTASPVVRKGVSSA 219
            +  S++ V  ++ DECHH   NH Y  IM E++     ++PKVFGMTASP+      + 
Sbjct: 130 HSHWSVEKVSLLIFDECHHTRKNHAYNGIMHEYFQTIPSDRPKVFGMTASPIW-----NP 184

Query: 220 MDCEGQISELESTLDSQVFTIEDKTE------------MEVFVPSAKESCRFYDQSKFCG 267
            D EG ++ LE  LD+ V  + +  E            ++ F P +      Y     C 
Sbjct: 185 KDAEGSLATLEKNLDATVIAVREHVEELQENSPRPVEVIKEFSPPSDTYDYLYPTLWDCL 244

Query: 268 SDLKGKLEVSWS------KFDASLSKLQG--SQLNCYKDMDDKHKTLRKQLSDYHAKILY 319
           S     +E++        K+  + + L    + L  Y D+  +      +L     +   
Sbjct: 245 SLFTNAVEINIPVDKLHMKYQMTRNSLGAFSADLFLYTDIKTRLIHFIDELESSQNETFL 304

Query: 320 CLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
            LD               +  +   E  E  +         LE++  ++    P     F
Sbjct: 305 GLD-------------GFDHHIDVDESSESAQSQFPAISPDLEQIDAILSEFRP-----F 346

Query: 380 LDFGFDYSKA---VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436
            D G +       V L + + K++ L+++ L     T    I+FVE+   A  + + +  
Sbjct: 347 FDSGTEVPAVPIPVPLAWCTPKVNALVEVLLEHYSPT-FHAIVFVEQRQVAACLAKILPC 405

Query: 437 VPFLT-HLTVAYLTGS----------TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE 485
           +P L  ++  A L G            ++   +    Q++ +E FR GK+NLL AT V E
Sbjct: 406 IPELRGYVRCAELVGHGANHGHGPVVNSNARGMGLARQQDTVELFRQGKLNLLVATSVAE 465

Query: 486 EGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSER 545
           EG+H P C  V+RFD  + +  Y+QSRGRAR   S F++M ++ +     +    ++SE 
Sbjct: 466 EGLHFPACDIVVRFDPIQHMVGYVQSRGRARTKTSTFVIMAQKDHSAHLVRYNAFLKSEP 525

Query: 546 SVTDTALSR-DPEACFLK---------------ACTYVKTKSYIVESTGASVTTDSSVNL 589
            +     +R +P A  L                A   V+ + YIV STGA +T DS+VNL
Sbjct: 526 ELKRVYQTREEPAATRLDPGEDSEEGEVEEDDPADVAVRER-YIVPSTGAVLTYDSAVNL 584

Query: 590 IHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQT----IVGPTSRNKNLSK 645
           ++  C ++P D  YTP  + KY      Y   L LPS+ P         GP  R+K  +K
Sbjct: 585 LNHLCSLIPHDA-YTPPQLPKYSG---DYAVMLELPSSLPLPIDRLFFSGPERRSKREAK 640

Query: 646 QLVCLEACEKLHQVGALNDHLLPS 669
           + V   A ++LH++   +D+LLP+
Sbjct: 641 RAVAFLAVKELHRLDVFDDYLLPA 664



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 119/275 (43%), Gaps = 36/275 (13%)

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            +P +   RV     V ++  LLP + +R+  +  A Q R E+        I   L++EA 
Sbjct: 921  VPKDACRRVHFSEDVYRAFLLLPKLCRRVTDVYRARQERIELGLPM----IAEDLLIEAS 976

Query: 1067 TTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
            T      +F+ +RLE LGDSVLK   + H+   YP +HEGQLS  R  +V N TL     
Sbjct: 977  TLPTTSLTFNNQRLETLGDSVLKLGSTVHIMNKYPHRHEGQLSHLRQNSVSNRTLLSRAK 1036

Query: 1127 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD 1186
            + +L+ ++   + +   W                     VP       +DT   + +   
Sbjct: 1037 EIELERFLNSESHNLHFW------------------RYTVP-------EDTDSTLCRIRR 1071

Query: 1187 MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGID--ADLEVSLVDDCITRASL 1244
               R    +++ DC EA +GA +V GG+  AL     LG+     +  SL     +R   
Sbjct: 1072 STRREFPRRSLQDCMEATLGAAFVTGGIDMALQAGTALGLSFGGPIPWSLK---YSRRPE 1128

Query: 1245 RSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
             S  P +    D++  + YEF    LL EA TH S
Sbjct: 1129 SSPAPHL--FADLQESLCYEFHRGDLLVEAATHPS 1161



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 1061 LILEALT--TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118
            L++EA T  +     S S +RLE LGD+V+   V  +L+  +P+ + GQLSA RS AVC 
Sbjct: 1152 LLVEAATHPSFATSASSSYQRLEFLGDAVIDLVVLNYLYRRFPQANSGQLSAARSRAVCG 1211

Query: 1119 STLHKLGTDR 1128
             TL  +   R
Sbjct: 1212 PTLASISVRR 1221


>gi|409082707|gb|EKM83065.1| hypothetical protein AGABI1DRAFT_125544 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 1430

 Score =  265 bits (678), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 206/684 (30%), Positives = 331/684 (48%), Gaps = 91/684 (13%)

Query: 35  PSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK 94
           P ++T S    PR YQ ++FE A++ N I  L TG+GKT+I ++LIK ++ A++S+G  K
Sbjct: 6   PIANTTS-ELRPRKYQEEIFERAQKENVITALNTGSGKTLIGLLLIKWMS-ALESSG-DK 62

Query: 95  LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
           LIIFL P V LV QQ   +R +T    E+ YGA  +   D   W+K++ K DV+VMTPQI
Sbjct: 63  LIIFLVPRVALVEQQAKYLRDNTPLRTEKLYGALDISLSDRMQWKKKLGKCDVIVMTPQI 122

Query: 155 LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--KSDNKPKVFGMTASPVV 212
           L++ +  +  SL  +  +V DECHHA  NHPY  IM+E+++  + +++PK+FGMTASP  
Sbjct: 123 LVNFITHSIWSLRQIALLVFDECHHARKNHPYNIIMQEYFYIKEVEDRPKIFGMTASP-- 180

Query: 213 RKGVSSAMDCEGQISELESTLDSQVFTIEDKT-EMEVFVPSAKESCRFY----DQSKFCG 267
              V +  D  G +  LE+ LDS + ++ +   E+ V  P   E    +    D   F  
Sbjct: 181 ---VWNTKDPVGSLLTLETNLDSVIISVREHVDELAVHTPRPSELITIFPAPPDNYDFHD 237

Query: 268 SDLKGKLEV----SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
            ++   L +    +W   + +   L                 +R      H   LY    
Sbjct: 238 PNVLRCLSIISPATWEHLEVAWPSL----------------VMR------HDATLY---N 272

Query: 324 LGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC--KYFLEEVLHVIGSALP-------- 373
           LG  CA   + + +  VLK+        Q+ L+      +E V +V G++ P        
Sbjct: 273 LGPYCASLFLYLEVRHVLKSV-------QTGLRTIEDTKMEVVEYVAGASAPKRNPPEEL 325

Query: 374 -LADKIFLDF-GFDYSK--------AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVER 423
            L   I LDF GF +           V L + S K+  L  + L F  +     I+FVE+
Sbjct: 326 NLIRDILLDFEGFFWRNDCPNRVPIPVPLKWCSPKVDALKHILLEF-YTPNFQVIVFVEQ 384

Query: 424 IIAAKVVERFVKKVPFLT-HLTVAYLTGSTTSVDAL---TPKVQKEVLESFRGGKVNLLF 479
              A  + + +  +P L   +  A+L G   + D +   T     + +++FR G+VN+L 
Sbjct: 385 RQVAACLSKILPVIPGLEGKIRSAHLVGQGVNSDGVSKATDTYHGDAIQAFRKGEVNVLI 444

Query: 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           AT V EEG+  P C  V+RFD  + +  Y+QSRGRAR  +S+FI+M+ + +        +
Sbjct: 445 ATSVAEEGLDFPACDLVVRFDPFRHMVGYVQSRGRARNADSRFIVMIRQDDQVSFEFYQN 504

Query: 540 IIRSERSVTDTALSRDPEACFLKA-------------CTYVKTKSYIVESTGASVTTDSS 586
           ++  E  +      R   A  + A                   + Y+V ST A ++ DS+
Sbjct: 505 LLAQEPEMNKAYQGRQRAAVTMPAQQEDEDEEDDLNPLDLASRERYVVPSTEAVLSYDSA 564

Query: 587 VNLIHRYCEMLPSDKYYTP-KPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSK 645
           + L++  C ++P D Y  P KP F     +   +  L++P      T  GP   +K  +K
Sbjct: 565 IGLLNYLCALIPCDAYTPPHKPKFT-GDFQSTVQLPLSIPLPPDQLTYTGPLKCSKKEAK 623

Query: 646 QLVCLEACEKLHQVGALNDHLLPS 669
           + V   A ++LH++   + +LLP+
Sbjct: 624 RAVSFLAVKRLHELDIFDQYLLPT 647



 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 131/517 (25%), Positives = 202/517 (39%), Gaps = 108/517 (20%)

Query: 1015 VDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCES 1074
            VD+   V+++  +LP++  ++     A   R  I        IP  L++EALT       
Sbjct: 924  VDMSPDVIRAFEILPTLCHKITDAYRAQSTRLNIGLP----FIPDDLLMEALTLPNVDAD 979

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
            FS +RLE LGD+VL    + HL   YP++HEGQLS  R+  V N  L       +L+ +I
Sbjct: 980  FSNQRLETLGDAVLDICTTVHLMFKYPRRHEGQLSTLRAGRVSNKFLVSCARTVELERFI 1039

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
                    +W         P   + G +  E+        +D K V         R +  
Sbjct: 1040 SSEKMGVEKW---------PFVEQKGYEAKEI--------RDRKSV--------KRQIPR 1074

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSY-VPRINE 1253
            + + DC EAL+GA ++ GG+  AL      G+         + C  RA  R   VP +  
Sbjct: 1075 RGLQDCVEALLGASFLAGGIPMALRTGVCFGLSFGGIQPWGERC-RRAEAREIGVPAL-- 1131

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHASVQ----------EF------------YCYQ---- 1287
            +  +E +IGY F    LL EA+TH S++          EF            Y +     
Sbjct: 1132 VAGLEKEIGYVFENPELLVEAVTHPSLEFSSTPSYQRLEFLGDSVIKMLVTEYLFHKFPK 1191

Query: 1288 ---------------------------NLYKHLQHCSTLLLSQITEYVKSF--PKPGETT 1318
                                       +++K+L   S  L + I  YV         E  
Sbjct: 1192 ATSHQLALPRTKAICSPALAHIAIRKIHIHKYLLQNSIDLNNAINLYVPVLESATADEIV 1251

Query: 1319 DSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRE 1376
              G     PKA+ D  ES+VGAV +D   +LD    I   ++  I+      +P  P+ E
Sbjct: 1252 RRGWRYDPPKAISDAFESVVGAVFVDVGYDLDRTGGIVCRLMEDILEVLNPSIPKDPVSE 1311

Query: 1377 LIELCDSLGYFVKENCTLKG----------EMVHAELRLQLKDVLLVGEGQERSRKAAKG 1426
            ++E   S+G     N   K           E V A    Q+    +V   +  SR  A  
Sbjct: 1312 VLEWLASVGCSKGHNLKFKRSTEERNGQAVESVSAVFHGQIVAGPIVSNSKAVSRFTAAE 1371

Query: 1427 KA-------ASQLLKKLEVCEKR-ISKGASNTGKLGD 1455
            +A         +L KKL  C+ + I+   + +G++ D
Sbjct: 1372 RAFMALRASDEELFKKLCDCQNQMITDEVTGSGEVDD 1408


>gi|327355811|gb|EGE84668.1| hypothetical protein BDDG_07613 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 1509

 Score =  265 bits (677), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 200/674 (29%), Positives = 327/674 (48%), Gaps = 77/674 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFK-KLIIFLAP 101
           PR YQL++FE AK  NTIAVL+TG+GKT+IAV+L+K + Q   A ++NG   ++  FL  
Sbjct: 93  PREYQLELFEKAKTANTIAVLDTGSGKTLIAVLLLKQMIQNELADRANGKPPRISFFLVD 152

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV LV+QQ  V++ + D  ++++ GA   D W    W K  ++N ++V T ++L   L +
Sbjct: 153 TVTLVYQQAAVLKANIDQNIDKFCGAMQTDLWSKDTWDKHFSRNMIIVCTAEVLHQCLLR 212

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS---DNKPKVFGMTASPVVRKGVSS 218
           +F+ ++ +  ++ DE HHA  +HPY +I+K+FY +     N+PK+FGMTASP     V +
Sbjct: 213 SFIQMERINLLIFDEAHHAKKDHPYARIIKDFYLQKIVVQNRPKIFGMTASP-----VDA 267

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
            +D       LE+ LDSQ+ T  +   +   +P   E    YD+                
Sbjct: 268 KVDVVKAAMTLEALLDSQIATASNLNALRQAIPRPNEQMWVYDRLD-------------- 313

Query: 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338
              D S ++L       YK M  +   +R +L    +  L     LG  C+       L+
Sbjct: 314 ---DPSETEL-------YKSMQSRFGRIR-ELEKIFSFALEASSTLGRWCSDWLWTFALD 362

Query: 339 KVLKAQEECEIYR-----QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393
           +    + E +I +     +S  Q K   E +  +  +A  +    F      Y+      
Sbjct: 363 EAELPKLEGKISKSYMQSRSGNQLKGADEAIDLLREAAQLIKSHAF------YTPVDCTE 416

Query: 394 YISTKLHEL-LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG-- 450
           ++S+K+  L  +L + F + T   CI+F+++   A+++     ++    H+    L G  
Sbjct: 417 HLSSKVRLLSHELSMYFERHTDTKCIVFIQQRYTARLLAELFSRIG-TQHMRTGVLIGVR 475

Query: 451 -STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
                    + + Q   L  FR G++N LFAT V EEG+ +P+C+ VIRFDL  T+  Y+
Sbjct: 476 HDGIGGANFSFRQQFLTLLKFRKGELNCLFATSVAEEGLDIPDCNLVIRFDLNSTMIQYV 535

Query: 510 QSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD--TAL--------SRDPEAC 559
           QSRGRAR  +S +  M+ER NL   + + ++ R+E  +     AL        S D    
Sbjct: 536 QSRGRARHSHSIYAHMVERDNLIHSSSVEEVQRAENIMRRFCEALPEDRIIRGSSDDLGM 595

Query: 560 FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYE 619
            L    Y    S+ + STGA +T +SS+ ++  Y   L  +   + +  +  +  + A+ 
Sbjct: 596 ILDNERY--RNSFTIHSTGAKLTYESSLAVLAHYASSLQYENDMSAQVNYFIERIDGAFV 653

Query: 620 CELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLI 679
           CE +LP  +PF+ + G  S  K  +KQ    E C  L + G L+DH             +
Sbjct: 654 CEASLPEKSPFRGMTGKPSARKLHAKQSAAFETCLMLRKNGLLDDH------------FV 701

Query: 680 SKKNESLPGAGTTK 693
           SK ++ LP     K
Sbjct: 702 SKYHKRLPAMRNAK 715



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 150/412 (36%), Gaps = 118/412 (28%)

Query: 1031 VMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT----------------TLGCCES 1074
            ++ RLES +++ +      C   + +I + L LEALT                  G  ++
Sbjct: 1006 IISRLESYLISLEA-----CDMLHINIKTHLALEALTKDSDNTEEHRGEQIHFQRGMGKN 1060

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
            +  ERLE LGD  LK A S  LF   P   E     +R   +CN  L       KL  +I
Sbjct: 1061 Y--ERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFI 1118

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
            R   F  R W   G + L               L GK           K        +G 
Sbjct: 1119 RTQGFSRRNWYPEG-IKL---------------LQGK----------AKSESQNKHSLGD 1152

Query: 1195 KTIADCAEALIGAYYVGGG----LIAALYMMKWLGIDADLEVSLVDDCITRASLRSY--- 1247
            KTIAD  EALIGA  + GG      +A+  +       D   S  +  +   SL  Y   
Sbjct: 1153 KTIADICEALIGASLLSGGKAHRFDSAVKAVTTFVNSDDHRASEWNCYVNLYSLPDYQIA 1212

Query: 1248 ---VPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY----CYQN------------ 1288
                 +++  K I  ++GY+F    LL+ A THAS    +    CYQ             
Sbjct: 1213 QADAGQLDLAKQIGDRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMV 1272

Query: 1289 --------------------------------------LYKHLQHCSTLLLSQITEYVKS 1310
                                                  L++HL + S  LL QIT YV+ 
Sbjct: 1273 CVEYLYHRYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEE 1332

Query: 1311 FPKPGETTDSGP-----SMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFK 1357
                   +++ P     +   PK L D+LE+ +GA+ +D+    + V   F+
Sbjct: 1333 IELAEADSNNSPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQ 1384


>gi|453081348|gb|EMF09397.1| dicer-like protein 1 [Mycosphaerella populorum SO2202]
          Length = 1541

 Score =  264 bits (675), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 197/675 (29%), Positives = 338/675 (50%), Gaps = 71/675 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK----KLIIFLAP 101
           PR YQ+++FE AK+RNTIAVL+TG+GKT+IAV+L++ +      N  K    K+  FL  
Sbjct: 102 PREYQIELFERAKKRNTIAVLDTGSGKTLIAVLLLRWVIDNEIENRAKGMPVKISFFLVA 161

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V LV+QQ+ V+  + D ++    GA   D WD   WQKE  +N V+V T +IL  AL  
Sbjct: 162 SVTLVYQQFSVLESNLDHKIARLCGADNTDRWDGARWQKEFYENKVVVCTAEILNQALAH 221

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSA 219
           +++ +  +  ++ DE HH   NH Y +I+K+FY   D   +P++FGMTASP     + + 
Sbjct: 222 SYIRMSQINLLIFDEAHHTKKNHSYARIVKDFYLMEDPATRPRIFGMTASP-----IDAK 276

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAK-----ESCRFYDQSKFCGSDLKGKL 274
           MD      ELES LDS++ T  D +  E     A+     ES    D       D+K + 
Sbjct: 277 MDVIQAAWELESLLDSKIATTSDMSLTEAIKKPAEHVMGYESLPRTDYETDLLRDVKSRY 336

Query: 275 E---VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYE 331
           E   V  + F+      + +++ C+         L +  +D +    +  ++ G    YE
Sbjct: 337 EHIPVFSNVFE------RAAEIACH---------LGRWCADSYILRAFSHEKAG---KYE 378

Query: 332 AVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVD 391
              + +EK   A+       +     K  + E +  + +   + DK+            D
Sbjct: 379 ---MDIEKKFHARRVSREMVELDDAVKE-IREAVEYVQTRRNVLDKLV---------HAD 425

Query: 392 LGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS 451
           +     +LH  L+  L F + +   CI+FV+R   A+++     ++    H+   +L GS
Sbjct: 426 ISSKVLELHRYLR--LQFERLSDHRCIVFVDRRYTARMLHILFSRLS-TPHMRGHFLVGS 482

Query: 452 TT---SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
                  D+ T + Q   L  FR G++N LFAT V EEG+ VP+C+ +IRFD+  T+  Y
Sbjct: 483 NNGGLDEDSFTFRQQVMTLMRFRKGEINCLFATSVAEEGLDVPDCNLIIRFDMYTTMIQY 542

Query: 509 IQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVT--------DTAL--SRDPEA 558
           +QSRGRAR  NS+FI M+E GN      L ++  +E ++         D  L  ++D   
Sbjct: 543 VQSRGRARNRNSKFIHMIEIGNSTHSQTLNEVRYAEATMRRYCELLPEDRKLQGNQDSLE 602

Query: 559 CFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAY 618
             L+    ++T+  +   +GA +T  ++++++  +   +P++      P +   +  + Y
Sbjct: 603 VLLEREKNMETR--VDPISGAKLTYANALSILAHFVTAVPTESDEPQHPTYVVSTRGQKY 660

Query: 619 ECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE--PS-E 675
             E+ LP ++P ++ +G   + K+L+K+    +AC  L   G LN++L+P  ++  P+  
Sbjct: 661 IAEVILPGSSPLRSKIGKIHQKKSLAKRSAAFDACVYLRTQGHLNENLVPVYQKKLPAMR 720

Query: 676 NNLISKKNESLPGAG 690
           N L++   ++  G G
Sbjct: 721 NALLAVDMKATSGYG 735



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 161/443 (36%), Gaps = 125/443 (28%)

Query: 1009 PELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT- 1067
            PELL    +   +  S  + PS++ R ES ++  +      C +          L A T 
Sbjct: 992  PELLKFSALTPEIATSCIVWPSIIHRFESYLICIE-----GCDTIGLDCGPRFALAAFTK 1046

Query: 1068 ---------------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARR 1112
                             G  E++  ERLE +GD+ LK A +   F+  P ++E     RR
Sbjct: 1047 DSDNQGEHETERVNFQRGMGENY--ERLEFIGDTFLKTATTISTFIQNPNENEFAFHVRR 1104

Query: 1113 SWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKF 1172
               +CN  L  +    KL  YIR  AF+ R W   G L L               L G  
Sbjct: 1105 MQMLCNKNLFGVALKLKLYEYIRSIAFNRRYWYPEG-LKL---------------LSG-- 1146

Query: 1173 FTQDTKVVVGKPCDMGHRW----MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLG--- 1225
                T V+ G+  +  H      +G KTIAD  EALIGA Y+      A     W     
Sbjct: 1147 ----TGVIKGQEKENFHEPRNHDLGEKTIADVCEALIGAAYLTWDQPGAWQAEHWTNAVK 1202

Query: 1226 -----IDADLEVSLV-DDCITRASLRSY-------VPRINEIKDIESKIGYEFTVKFLLQ 1272
                 +D+D    L  DD  T  S   Y       V R +  + +E +  Y F    LL 
Sbjct: 1203 AVTTLVDSDDHRMLTWDDYRTAYSKPHYQTAEATAVQR-DLAQKVEREHAYRFKYPRLLY 1261

Query: 1273 EAITHASV----QEFYCYQNL--------------------------------------- 1289
             A  H SV    ++   YQ L                                       
Sbjct: 1262 SAFMHPSVPYINEKVPNYQRLEFLGDALLDQASITWLFNKYPDKDPQWLTEHKMAMVSNK 1321

Query: 1290 -----------YKHLQHCSTLLLSQITEYVKSFPK----PGETTDSGPSMK-APKALGDL 1333
                       +KHL+H   +L SQIT Y     +     G++ D   ++   PK L D+
Sbjct: 1322 FLGAVCVNIGFHKHLRHYHAVLQSQITAYAADLMEAKRIAGDSRDYWTTVSDPPKCLPDI 1381

Query: 1334 LESIVGAVLIDTKLNLDEVWRIF 1356
            +E+ +GA+ ID+  N  EV R F
Sbjct: 1382 VEAYIGALFIDSDFNYGEVQRFF 1404


>gi|358366696|dbj|GAA83316.1| hypothetical protein AKAW_01431 [Aspergillus kawachii IFO 4308]
          Length = 1404

 Score =  264 bits (675), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 198/697 (28%), Positives = 338/697 (48%), Gaps = 102/697 (14%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA---IKSNGFK-KLIIFLAP 101
           PR YQL++FE AK +NTIAVL+TG+GKT+IAV+L+K   +     ++ G + ++  FL  
Sbjct: 110 PREYQLELFERAKAQNTIAVLDTGSGKTLIAVLLLKHTLEKELNDRAEGKQHRIAFFLVD 169

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V L +QQ  V+R + D  V  ++GA G D W    W++   KN V+V T +IL   L  
Sbjct: 170 SVTLAYQQAAVLRNNLDQSVGHFFGAMGTDLWSKSVWEQHFQKNMVIVCTAEILNQCLLN 229

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSA 219
           +++ +  +  ++ DE HH   +HPY +I++E Y + D   +P++FGMTASP+  KG    
Sbjct: 230 SYVKMSQINLLIFDEAHHTKKDHPYARIIRESYLEEDPSKRPRIFGMTASPIDTKG---- 285

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFV--PSAKESCRFYDQSKFCGSDLKGKLEVS 277
            D   + + LE  LDS++ T  + + +   V  P  +   RF D +  C   L+G    +
Sbjct: 286 -DIVDEATRLEKLLDSRIATTSNMSLLRQVVRRPVERLEDRFGDMA--C---LEGIFRFA 339

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL 337
           W          Q S                               ELG  C+  A    L
Sbjct: 340 W----------QASS------------------------------ELGRWCSDRAWARAL 359

Query: 338 EKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397
              +  + E  + + ++ +    + E  +     +  A +I  D+ F  S     G +S 
Sbjct: 360 ADDVLPKLEGNVRKTANSETSSDVPESAYKEILRITEASEIVKDYEF--SSPETFGQLSP 417

Query: 398 KLHELL-QLFLSFGKSTQVLCIIFVERIIAAKVVERFVK--KVPFLT-HLTVAYLTGSTT 453
           K+  L  +L   FG+ T+  CI+F ++   A ++    +   +PF+   + +   +G   
Sbjct: 418 KVQVLREELAHYFGRPTETKCIVFTQKRYTALILSELFQTLNIPFIRPGVLIGVRSGDLA 477

Query: 454 SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
            ++ +T + Q   L  FR G++N LFAT V EEG+ +P+C+ V+RFDL +T+  Y+QSRG
Sbjct: 478 GMN-ITFRQQFISLVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFDLYQTLIQYVQSRG 536

Query: 514 RARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTY------- 566
           RAR  NS +  M+ERGNL    +L ++  +E+ + +   +  PE   L    +       
Sbjct: 537 RARHFNSTYASMVERGNLDHEQRLLEVQDAEKMMQNFCRTL-PEDRLLYGIDHDLDTVLQ 595

Query: 567 --VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTL 624
                +++ ++STGA +T  S+  ++ RY   L  +K  + +  +       A+ CE+ L
Sbjct: 596 KDEGNRTFKIKSTGAKLTYHSATAILARYASSLQYEKEISAQVTYVVLPINGAFVCEVIL 655

Query: 625 PSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL-------LPSV------- 670
           P  +P + + G  +  K+++K+    + C  L +   L+DH        LP++       
Sbjct: 656 PEKSPIRGLTGSPAMKKSIAKRSAAFDTCLLLRKNKLLDDHFNSIYHRRLPAMRNAKLAI 715

Query: 671 --EEPSENNLISK-----KNESLPGAGTTKRKELHGT 700
             +  SE ++ISK     + + +P       KEL+GT
Sbjct: 716 TSKRTSEYDMISKPSLWGRKQGMPP------KELYGT 746



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 136/399 (34%), Gaps = 110/399 (27%)

Query: 1050 CHSRNFHIPSSLILEALT----------------TLGCCESFSMERLELLGDSVLKYAVS 1093
            C S NF +   L LEA T                  G   ++  ERLE LGD  LK A S
Sbjct: 917  CESLNFTVRLDLALEAFTKDSDNTEEHRAQQIHVQRGMGRNY--ERLEFLGDCFLKMATS 974

Query: 1094 CHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLR 1153
              LF   P   E      R   +CN  L      +++  YIR   F    W   G L L 
Sbjct: 975  IALFTQNPDDDEFDYHVNRMCLICNKNLFNAAVKKEIYKYIRSRGFSRHTWYPEG-LKL- 1032

Query: 1154 PVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG 1213
                          L GK  ++       K        +  KTIAD  EALIGA  + GG
Sbjct: 1033 --------------LQGKDHSR-------KATTESKHALAEKTIADVCEALIGASLLSGG 1071

Query: 1214 ----LIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPR------INEIKDIESKIGY 1263
                   A+  +  L            D I+  ++  Y  R      I+  + +E K+ Y
Sbjct: 1072 PEHRFDMAVKAVTTLVNSPSHMAERWKDYISLYTIPKYQRRAADGAEIHLCRKVEEKLSY 1131

Query: 1264 EFTVKFLLQEAITHASVQEFY----CYQN------------------------------- 1288
             F    LL  A TH S    +    CYQ                                
Sbjct: 1132 RFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARYPDRDPQWLTE 1191

Query: 1289 -------------------LYKHLQHCSTLLLSQITEYVKSFPKPGETTDSG-----PSM 1324
                               L+ HL++ S  L SQIT+Y +        ++S       + 
Sbjct: 1192 HKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESESAVDYWTVTK 1251

Query: 1325 KAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPI 1363
              PK L D++E+ VGAV +D+  N + +   F+  + P 
Sbjct: 1252 DPPKCLPDMVEAYVGAVFVDSGFNFEVIEEFFRDHIKPF 1290


>gi|158706457|sp|A1CBC9.2|DCL1_ASPCL RecName: Full=Dicer-like protein 1; Includes: RecName:
           Full=Endoribonuclease dcl1; Includes: RecName:
           Full=ATP-dependent helicase dcl1
          Length = 1534

 Score =  264 bits (675), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 189/644 (29%), Positives = 323/644 (50%), Gaps = 65/644 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA---IKSNGF-KKLIIFLAP 101
           PR YQ+++FE AK +NTIAVL+TG+GKT+IAV+L++ + Q     ++NG   ++  FL  
Sbjct: 123 PREYQIELFERAKAQNTIAVLDTGSGKTLIAVLLLRHVLQNELNDRANGKPHRVSFFLVD 182

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V L +QQ  V+R + D  V  ++GA G D WD Q W++ + +N V+V T +IL   L  
Sbjct: 183 SVTLAYQQAAVLRNNIDQNVAHFFGAMGTDLWDRQVWEEHLQQNMVIVCTAEILNQCLLN 242

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSA 219
           + + ++ +  ++ DE HH   +HPY +I+++ Y K+    +P++FGMTASP+  KG    
Sbjct: 243 SHVRMNQINLLIFDEAHHTKKDHPYARIIRDSYFKASPPQRPRIFGMTASPIDTKG---- 298

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
            D     + LE+ LDS++ T    T +   V    E    YD           +LE   S
Sbjct: 299 -DIIAAATRLETLLDSRIATTSKITLLRQVVSRPIEKVWAYD-----------RLE---S 343

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339
            F  +L KL  ++    K ++   +              Y   ELG  C+  A    L  
Sbjct: 344 PFKTNLHKLMENRFGNVKALEGVFRF-----------AWYASSELGRWCSDRAWLYALAD 392

Query: 340 VLKAQEECEIYR-----QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGY 394
            +  + E  + +      ++ +     +E+  +  ++  +    F D  F        G 
Sbjct: 393 DVLPKLEGHVNKLAESTAAATERDMAFKEITLIKEASNIVKAHTFNDPEFP-------GE 445

Query: 395 ISTKLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERF--VKKVPFLT-HLTVAYLT 449
           +S K+  LLQ  LS  F  + +  CIIF ++   AK +     +  +P L   + +   +
Sbjct: 446 LSPKV-RLLQTELSKHFSHAPETKCIIFTQKRYTAKTLHELFTILSIPHLRPGVLIGVRS 504

Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
           G    ++ +T + Q   L  FR G++N LFAT V EEG+ +P+C+ V+RFDL  T+  Y+
Sbjct: 505 GDIGGMN-ITFRQQFLALVKFRKGEINCLFATSVAEEGLDIPDCNLVVRFDLYHTLIQYV 563

Query: 510 QSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTY--- 566
           QSRGRAR ++S +  M+E+ N     +L ++  +E+++ +   +  PE   L    +   
Sbjct: 564 QSRGRARHYHSTYASMVEKDNSDHEARLREVREAEKTMQNFCETL-PEDRILHGNDHDLD 622

Query: 567 ------VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYEC 620
                    +++ V+STGA +T  S++ ++ RY   L  +K  TP+  +  +S    Y C
Sbjct: 623 SLLQHEEGRRTFTVKSTGARLTYHSAIAILARYASSLQYEKETTPQATYVVQSVGNTYVC 682

Query: 621 ELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALND 664
           E+ LP  +P + + G  +  K+++KQ    + C  L +   L+D
Sbjct: 683 EVILPEKSPIRGLTGSPAIRKSIAKQSAAFDTCLLLRRHKLLDD 726



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 119/496 (23%), Positives = 177/496 (35%), Gaps = 144/496 (29%)

Query: 961  HPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPIS 1020
            H  QP+L+ +      NLL             K     KK Q    +  E L    +P S
Sbjct: 973  HWDQPVLQAELVRLRRNLL------------DKLTTEEKKIQTECFICAEPLKISAIPPS 1020

Query: 1021 VVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT------------- 1067
            +  +    P+++ RL+S +++ +      C   +  I S   LEA+T             
Sbjct: 1021 IASTCLAFPAIITRLDSYLISIEA-----CDELDLVIRSDYALEAVTKDSDNTEEHRGQQ 1075

Query: 1068 ---TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL 1124
                 G  +++  ERLE LGD  LK A S  LF   P   E      R   +CN  L   
Sbjct: 1076 IHFQRGMGKNY--ERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNT 1133

Query: 1125 GTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP 1184
               R++  YIR  +F    W  P  L+L               L GK  ++       K 
Sbjct: 1134 AKKRQIYRYIRSRSFSRHVWY-PDGLTL---------------LQGKDHSK-------KM 1170

Query: 1185 CDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASL 1244
                   +G KTIAD  EALIGA  + GG      M    G+ A   VS+  D  + A  
Sbjct: 1171 LSQAKHALGEKTIADVCEALIGACLLSGGPEHRFDM----GVKA---VSVFVDSPSHAVS 1223

Query: 1245 RS------YVPRINEIK-----------DIESKIGYEFTVKFLLQEAITHASVQEFY--- 1284
            R       Y P   +++            +E K+GY F    LL  A+TH S    +   
Sbjct: 1224 RWKEYIGLYKPPNYQVRKAEGAETNLALQVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFR 1283

Query: 1285 --CYQNL--------------------------------------------------YKH 1292
              CYQ L                                                  +KH
Sbjct: 1284 VPCYQRLEFLGDSLLDMVCVEDLFHRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGFHKH 1343

Query: 1293 LQHCSTLLLSQITEYVKSFPKPGETTDSGP------SMKAPKALGDLLESIVGAVLIDTK 1346
            ++  S  L +QIT YV+   +  E    G       +   PK L D++E+ +GA+ +D+ 
Sbjct: 1344 IKAFSNPLQAQITYYVEEI-ETAEAESEGAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSD 1402

Query: 1347 LNLDEVWRIFKPILSP 1362
             + + +   F+  + P
Sbjct: 1403 FSFEVIEAFFQAQIKP 1418


>gi|406864416|gb|EKD17461.1| putative Dicer-like protein 1 [Marssonina brunnea f. sp.
            'multigermtubi' MB_m1]
          Length = 1827

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 214/680 (31%), Positives = 333/680 (48%), Gaps = 81/680 (11%)

Query: 46   PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDI-AQAI--KSNGF-KKLIIFLAP 101
            PR YQ ++F  A  +N IAVL+TG+GKT+IAV+L++ I AQ +  ++ G  K++  FL  
Sbjct: 388  PRQYQTELFNEAINKNVIAVLDTGSGKTLIAVLLLRHIFAQELEDRAKGLPKRISFFLVD 447

Query: 102  TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
            +V LV QQ+ V++ + D  +E + G  G+D W    W+K ++KN V+V T ++L   L  
Sbjct: 448  SVQLVFQQHAVLKANLDQPMEMFCGDMGIDLWKKSTWEKHLDKNMVIVCTAEVLRHCLHH 507

Query: 162  AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK---PKVFGMTASPVVRKGVSS 218
            +FLS+  +  ++ DE HHA  +H Y +I+K+FY   ++K   PK+FGMTASP     V +
Sbjct: 508  SFLSMAQINLLIFDEAHHAKKDHAYARIIKDFYVTHEDKHTLPKIFGMTASP-----VDA 562

Query: 219  AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
             +D     +ELES L SQ+ T  D   ++  +   +E    Y       + L  + E   
Sbjct: 563  RVDVRKAAAELESILHSQICTASDPKLLQQTITVKQEQAAAY-------APLGPRFE--- 612

Query: 279  SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD---ELGLICAYEAVKI 335
                   + L       +K+    +  LRK L+       +  D   ELG  CA +    
Sbjct: 613  -------TPLYAQMFERFKN----NTVLRKPLN-------FAFDATKELGAWCADQVWPF 654

Query: 336  CLEKVLKAQEECEIYRQSSLQCKYF---LEEVLHVI---GSALPLADKIFLDFGFDYSKA 389
            CL      +EEC+   Q+  + KY    ++E L V+    + +  A  I     +D    
Sbjct: 655  CL-----GEEECKKL-QAKTERKYHAKKIQEPLAVLEKHKAQIQEARDIMKAHVYDAPDF 708

Query: 390  VDLGYISTKLHELLQLFL-----SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HL 443
             D    S  L   + L +      F + T    IIFV +   A+++ +   +    T HL
Sbjct: 709  TDKTAGSNNLSSKVVLLVRYLRERFERPTDDKAIIFVNQRYTARLLAKLFSQPNIGTPHL 768

Query: 444  TVAYLTGSTTSVDA--LTPKVQKEVLE--SFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
                L G T S DA  L    + +VL   +FR G +N LFAT V EEG+ VP+C+ V+RF
Sbjct: 769  RCGTLVG-TRSGDAGDLNQSFRDQVLTMGNFRKGNINCLFATSVAEEGLDVPDCNLVVRF 827

Query: 500  DLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC 559
            DL  T+  YIQSRGRAR  NS++I M E GN +    + ++ ++E ++        PE  
Sbjct: 828  DLYTTLIQYIQSRGRARHQNSRYIHMYEAGNTEHATIMLEVRKNE-NILRKFCEALPENR 886

Query: 560  FLKACTY------VKTKSYIV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKY 611
             L    Y       K KS+ +   STGA +T   S+ ++  + + LP  +    +P +  
Sbjct: 887  KLTGNDYDMDHFLAKEKSHRIYKTSTGAKLTYKMSLTVLANFVDSLPHAQDTNLQPEYII 946

Query: 612  KSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVE 671
                  + CE  LP  +PF+  VG     K ++K     E C  L +   L++HLLP+  
Sbjct: 947  TVHNRHFICETILPEGSPFRGSVGRPCSTKQVAKCSAAFETCLGLVKCKLLDEHLLPTFT 1006

Query: 672  E--PSENNLI----SKKNES 685
            +  P+  N +    SKK E+
Sbjct: 1007 KQLPAMRNALLAVDSKKREA 1026



 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 137/351 (39%), Gaps = 64/351 (18%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P SVV   Y+ P+++ RLES ++A +      C   N  I   L LEA T         
Sbjct: 1298 IPTSVVAMAYVFPAIIHRLESYLIALEA-----CQLLNLKIRPDLALEACTKDSDNSEDH 1352

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G   ++  ERLE LGD  LK A S  LF  +P+  E      R   +CN  
Sbjct: 1353 GTEQVNFQRGMGNNY--ERLEFLGDCFLKMATSISLFGIHPENDEYSYHVDRMMLICNKN 1410

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L       KL  YIR  AF  R W   G L L+                GK     T   
Sbjct: 1411 LKNNAVKLKLYQYIRSQAFSRRAWYPEG-LVLK---------------QGKTAAAPTT-- 1452

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGA----YYVGGGLIAALYMMKWLGIDADLEVS-LV 1235
                    H+ +G K+IAD  EALIGA    Y+    + AA+  +  L    + +V+   
Sbjct: 1453 --------HK-LGDKSIADVCEALIGAALLTYHESKDMDAAVRAVTELVSSENHQVTCFA 1503

Query: 1236 DDCITRASLRSYVPRINEIK-----DIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLY 1290
            D        +  + +  E++      +E +  Y F    L + A TH S    Y +   Y
Sbjct: 1504 DYYKLYKKPKYQLAQATEMQRNLAAQLEQEHPYHFKYPRLARSAFTHPSYPYSYEHVPSY 1563

Query: 1291 KHLQHCSTLLLSQ--ITEYVKSFP--KPGETTDSGPSMKAPKALGDLLESI 1337
            + L+     LL    I     +FP   P   T+   +M + + LG L  S+
Sbjct: 1564 QRLEFLGDSLLDMACINFLYHAFPDKDPQWLTEHKMAMVSNQFLGALCVSL 1614


>gi|406034947|emb|CCF23094.1| Dicer 2 [Blattella germanica]
          Length = 1649

 Score =  263 bits (672), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 202/680 (29%), Positives = 325/680 (47%), Gaps = 69/680 (10%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           +F  R YQ  +   AK+RN+I  L TG+GKT IAVMLIK+++ A++     K   F+  T
Sbjct: 9   DFRARPYQEVLMNQAKKRNSIIYLPTGSGKTYIAVMLIKELSGALE---LGKHTFFMVNT 65

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V LV+QQ + I+ HT + V EY G   VD W    W++E+NK+ ++VMT QI +D L   
Sbjct: 66  VALVNQQAEYIKRHTHYSVGEYSGDMNVDFWTRDKWEQELNKHQIMVMTCQIFVDILSFG 125

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMD 221
            + L  V  ++ DECHHA  + P  ++M+ F       +P+V G+TA+ + +    SA+ 
Sbjct: 126 VVKLQNVNLLIFDECHHAVNDQPMRQVMQHFERCPIQQQPRVLGLTATLLNKN--CSAVK 183

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV---SW 278
              ++ +LE+T  S V T E+  E+  F  +  E    + +    G    G +E    +W
Sbjct: 184 VANEVKKLETTFQSTVATCENMDEVCFFATNPIELTVTFKE----GCSTVGHIEQQARNW 239

Query: 279 SK----------FDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
                       F+       G      K +DD      K+L +    +++ +D LG+  
Sbjct: 240 LNKTIQFINDIAFENKKVCSPGHAPANLKVLDDSCNKENKKLRNLLTDVIFHIDTLGMFG 299

Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
              A   CL  +++ +    + R+S        ++V   + + L    K+F D   D + 
Sbjct: 300 GSRA---CLAHIIQVER---LRRKSE---DMLTKQVYTAMITTLTAVRKLFEDEMSDCTL 350

Query: 389 AVDL-GYISTKLHELLQLFLSF--------------------GKSTQVLCIIFVERIIAA 427
              +  Y S K+  L+++   +                     K  +   ++FVER   A
Sbjct: 351 GTQIRNYSSYKVLTLIEIIKKYVPPDIAISPEDADCNTDSLQRKKEKFCTLVFVERRFTA 410

Query: 428 KVV----ERFVKKVPFLTHLTVAYLTG------STTSVDALTPKVQKEVLESFRGGKVNL 477
           KVV    E   K      H++  ++ G      + T   AL      + L  F+ G+ NL
Sbjct: 411 KVVYWILEELCKVDADFQHISPDFIVGFNYNPFNDTREGALQRNWCYDCLNRFQTGEKNL 470

Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           L A++V+EEGM +  C+ V++FDLP    SY+QS+GRAR   S +ILM+   +    +K 
Sbjct: 471 LVASNVLEEGMDIQKCNLVVKFDLPLNYRSYVQSKGRARHRTSHYILMVPSSDNTFMSKY 530

Query: 538 FDIIRSERSVTDTALSRDPE----ACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRY 593
            +   +E+++    + R  E    +  L A T          ++ +SV   S++ L+HRY
Sbjct: 531 EEYKATEKAIERLLVGRTEEREGPSEELIAKTLYDQLVPPYRTSKSSVNLVSAIPLLHRY 590

Query: 594 CEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIV-GPTSRNKNLSKQLVCLEA 652
           C MLP DK+    PI+      +   C L LP N+P   ++ G    N+ LSK+   LEA
Sbjct: 591 CNMLPQDKFTVLAPIWYMAETTKPKIC-LQLPMNSPLTELIEGQEMDNRKLSKRSAALEA 649

Query: 653 CEKLHQVGALNDHLLPSVEE 672
           C++LHQ+G L D LLP+  E
Sbjct: 650 CKRLHQMGELTDSLLPTGRE 669



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 127/485 (26%), Positives = 204/485 (42%), Gaps = 112/485 (23%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            +++ALT+    + F++ERLE LGDS LK   S +L++ Y +  EG+L+  +   + N  L
Sbjct: 1163 VVQALTSASSNDIFNLERLETLGDSFLKLMASLYLYMHYLRLDEGKLTQVKGKLIGNRNL 1222

Query: 1122 HKLGTDRKLQGYIRDSAFDPRR-WVAPG-------QLSLRPVPCECG-VDTLEVPLDGKF 1172
            +  G ++KL GY++   F P   W+APG       Q  +R +      +  L +P + + 
Sbjct: 1223 YYCGINQKLGGYMKVHDFVPTSDWIAPGICVDREIQQLMRAMNVSPNFLYELVLPPNEQM 1282

Query: 1173 ---FTQDTKVVVGKPCD----------------MGHRWMGSKTIADCAEALIGAYYVGGG 1213
                +++TK ++ +                   +  R +  KTIAD  EALIGAY  G G
Sbjct: 1283 SGVLSENTKEIIRQKLTDANVDKSGIHSSMENFLAVRAVADKTIADGVEALIGAYLKGSG 1342

Query: 1214 LIAALYMMKWLGI--DADLEVSLVDDCITRASLRS---------YV-PRINEIKDIESKI 1261
            +  AL ++ WL I     L  +L+D     A ++          YV   I+E   IE+ +
Sbjct: 1343 IRGALRLLTWLKILPSEALPGALLDTQPPTADVKMRDHNQPGDIYVLLSIHECMAIENIL 1402

Query: 1262 GYEFTVKFLLQEAITHAS-----VQEFYCYQNL--------------------------- 1289
             Y F  +  L +A+THAS     V E  CYQ L                           
Sbjct: 1403 QYTFKDRSYLLQALTHASYTPNRVTE--CYQRLEFLGDAILDFLITCHIYESCGELTPGE 1460

Query: 1290 -----------------------YKHLQHCSTLLLSQITEYVKSFPKPGET--------- 1317
                                   +K +++ ST L+  +  +VK     G +         
Sbjct: 1461 LTDLRSSLVNNVTFASLTVRYGFHKFMKYTSTRLMDMVDRFVKFQEDNGHSINEEVLILL 1520

Query: 1318 ----TDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP- 1372
                T+   ++  PK LGDL ESI GA+ +D+ +NL EVWR++  ++   +     E+P 
Sbjct: 1521 EETETNIAEAIDVPKVLGDLFESIAGAIYLDSGMNLKEVWRVYYRLMRKEIRTFSKEVPK 1580

Query: 1373 -PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQ 1431
             P+R L E       F+K        +V   ++L +        G   ++  AK  AA  
Sbjct: 1581 QPVRLLYENAPHRPEFLKSRLIDNSNVVMVTVKLLVDGKRRYFHGFGNTKLQAKRAAAKC 1640

Query: 1432 LLKKL 1436
             LK L
Sbjct: 1641 ALKSL 1645



 Score = 48.5 bits (114), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 18/133 (13%)

Query: 923  IVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNF 982
            IV  + + +  SPF  N   D  ++ +Y+ +KY + ++   QPLL +K   N  N L   
Sbjct: 897  IVTQITSLTPSSPFPSN---DYTSYADYYDKKYKLEIVKVDQPLLEVKAISNKINCL--- 950

Query: 983  NDGGGSGKGSKSGMNTKKPQMH-------VHMPPELLVRVDVPISVVKSLYLLPSVMQRL 1035
                   +G+K   +T K + H        ++  EL +R   P  +      LP+++ R+
Sbjct: 951  -----RPRGNKVSHSTSKRKRHELQEDFEENLIGELCMRFQFPSVLWLKATCLPTILHRI 1005

Query: 1036 ESLMLASQLREEI 1048
              ++LA +LR++I
Sbjct: 1006 NHILLAEELRQKI 1018


>gi|442570277|sp|Q1DKI1.3|DCL1_COCIM RecName: Full=Dicer-like protein 1; Includes: RecName:
           Full=Endoribonuclease DCL1; Includes: RecName:
           Full=ATP-dependent helicase DCL1
 gi|392869759|gb|EJB11896.1| dicer-like protein 1 [Coccidioides immitis RS]
          Length = 1500

 Score =  262 bits (670), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 196/642 (30%), Positives = 312/642 (48%), Gaps = 56/642 (8%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA--IKSNGFK--KLIIFLAP 101
           PR YQ+++FE AK+ N IAVL+TG+GKT+IAV+L+K I +   I  +  K  ++  FL  
Sbjct: 99  PREYQVELFEKAKKDNIIAVLDTGSGKTLIAVLLLKHIIEQELIDRSAEKPHRVSFFLVD 158

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V LV QQ  V++ + +  V+++ GA   D W+ + W++ + KN V+V T ++L   L  
Sbjct: 159 SVTLVFQQAAVLQNNINQRVDKFCGAMETDLWNGETWERHLAKNMVIVCTAEVLYQCLLH 218

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN--KPKVFGMTASPVVRKGVSSA 219
           AF+ ++ +  ++ DE H+A  +HPY +I+K+FY K  N  +PK+FGMTASP     V + 
Sbjct: 219 AFVKMENINLLIFDEAHNAKKDHPYARIVKDFYLKDGNAKRPKIFGMTASP-----VDAK 273

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
           MD       LE+ L+SQ+ T  + + +   VP   E    YD                  
Sbjct: 274 MDVVKAARNLETLLNSQIATASNLSLLRQSVPRPNEEVWSYD------------------ 315

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL-- 337
           + D      Q  +   YK++  +   LR  L       L     LG  CA       L  
Sbjct: 316 RLD------QPFETRLYKELRSRFGDLRA-LEKLFTFSLKASSNLGAWCADWVWSYALTE 368

Query: 338 EKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397
           E + K +         +L     +     +    +  A +I     F    AV    +S 
Sbjct: 369 ESLPKLEGRAARTAMGNLPIAKIVRPEAEI--QRIREASEIIRSHKFG-DPAVRPELLSP 425

Query: 398 KLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVD 456
           K+  L    L  F + T   CI+F E+   A+++     ++    HL    L G  +   
Sbjct: 426 KVRRLHHELLKYFERHTDTKCIVFTEQRHTARILCDLFSRIG-TKHLRPGVLIGVRSDAS 484

Query: 457 -ALTPKVQKEVLE--SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
             +    +++VL   SFR G+VN LFAT V EEG+ +P+C+ ++RFDL  T++ YIQSRG
Sbjct: 485 GGMNISFRQQVLAVVSFRKGEVNCLFATSVAEEGLDIPDCNLIVRFDLASTLTQYIQSRG 544

Query: 514 RARQHNSQFILMLERGNLKQRNKLFDIIRSERSV--------TDTALSRDPEACFLKACT 565
           RAR  NS F  ++ER N   R  +  +  SE  +         D  L+ D      ++  
Sbjct: 545 RARHMNSTFAHLVERDNFVHRESVNHLQSSEEIMKRFCISLPKDRILNSDDVDALYESDR 604

Query: 566 YVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLP 625
               KSY V++TGA +T  SS+ ++  +   L  +K  +    + ++  + A+ CE+ LP
Sbjct: 605 --NRKSYTVQTTGAKLTYSSSLVVLAHFANSLQYEKETSTVVSYYHRFTKNAFVCEVVLP 662

Query: 626 SNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
             +P + IVG  +  K ++KQ    E C  L + G L+DH +
Sbjct: 663 EKSPIRGIVGKPASKKLIAKQSAAFETCLLLRKHGLLDDHFV 704



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 156/439 (35%), Gaps = 136/439 (30%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P SV    +  P+++ R+ES ++A +      C   +  I   L LEALT         
Sbjct: 991  IPASVAAFAFAFPAIISRIESYLIALEA-----CQELDLPISPELALEALTKDSDNTDEH 1045

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G  +++  ERLE LGD  LK A S  LF   P   E     +R   VCN  
Sbjct: 1046 RAQQIHFQRGMGKNY--ERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLVCNQN 1103

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L K     KL  +IR  +F  R W  PG L+L               L GK   Q     
Sbjct: 1104 LFKTAVRFKLYAFIRSQSFSRRGWY-PGGLTL---------------LQGK--GQSKGAT 1145

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGA----------YYVGGGLIAALY------MMKWL 1224
              K        +  KTIAD  EALIGA          + +    + AL       ++ W 
Sbjct: 1146 ENKHA------LADKTIADVCEALIGACCLLASKNHRFDIAVKAVTALVSSDDHNVLNWE 1199

Query: 1225 GIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY 1284
                   +      +  A+       ++    ++ K+GY+F    LL+ A TH S    +
Sbjct: 1200 QYSRLYSIPKYQTAVVDAA------ELDLAAQVKKKLGYDFKYPKLLRSAFTHPSYPSAW 1253

Query: 1285 ----CYQN--------------------------------------------------LY 1290
                CYQ                                                   L+
Sbjct: 1254 ARVPCYQRLEFLGDALLDMACVEHIYHKHPDKDPQWLTEHKMAMVSNKFLGSVAVRLGLH 1313

Query: 1291 KHLQHCSTLLLSQITEYVKSF---------PKPGETTDSGPSMKAPKALGDLLESIVGAV 1341
             HL H ST L SQIT YV+           P    T  S P    PK L D++E+ +GA+
Sbjct: 1314 SHLNHFSTSLQSQITNYVEEIEAAELESGDPPDAWTLTSDP----PKCLPDMVEAYIGAI 1369

Query: 1342 LIDTKLNLDEVWRIFKPIL 1360
             ID+  + + V   F+  L
Sbjct: 1370 FIDSGFSFEVVEEFFQKFL 1388


>gi|440655799|gb|AGC22548.1| dicer [Ctenopharyngodon idella]
          Length = 1881

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 219/734 (29%), Positives = 341/734 (46%), Gaps = 89/734 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           + PR YQ+++ E A   NTI  L TG+GKT IAV+LIK+++  I+    +K  +FL    
Sbjct: 32  YTPRKYQVELLEAALEHNTIVCLNTGSGKTFIAVLLIKELSHQIRGED-RKRTVFLVNAA 90

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
             V QQ   +R H+D +V +Y  ++ +  W  + W +E+  N VLVMT  I L  L+   
Sbjct: 91  SSVVQQASTVRTHSDLQVGDYM-SEEMTTWPEEIWNREMMGNQVLVMTCHIFLHVLKNGV 149

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
           L L  +  +V DECH A  +HPY +IMK         P++ G+TAS  +  G     D E
Sbjct: 150 LPLSKINLLVFDECHLAITDHPYQEIMK-ICEGCPGCPRILGLTAS--ILNGKCDPCDLE 206

Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKE---SCRFY-DQSKFCGSDLKGKLEVSWS 279
            +I  LE  L S   T  D   ++ +    +E    C  Y DQS      L        S
Sbjct: 207 EKIQNLEKILQSNAETATDLVVLDRYASQPREVVLDCGLYHDQSGLSDRLL--------S 258

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC--- 336
           + D +L  L    L+ +++  D     ++ L+D  A     L  LG  CA +A  I    
Sbjct: 259 ELDEALHFLNDCNLSTHREDRDPTFISKQVLNDCRA----VLTVLGPWCADKAAGIMVRE 314

Query: 337 LEKVLKAQEE--------------------CE-IYRQSSLQCKYFLEEV---LHVIGSAL 372
           L+K +K ++E                    CE  +  +SL  K+   +V   L ++    
Sbjct: 315 LQKYIKHEQEELNRKFLLFTDTILRKIHALCEEHFSPASLDLKFVTPKVIRLLDILHEYK 374

Query: 373 PLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKS-----------TQVLC-IIF 420
           P   + F    +  ++  D  Y+S    E                      T +LC IIF
Sbjct: 375 PFERQQFESVEWYNNRNQD-NYVSWSDSEDDDEDEEAEAKEKPEANFPSPFTNILCGIIF 433

Query: 421 VERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKEVLES 469
           VER   A V+ R +K+     P L +++  ++TG +   +    K        Q+EVL  
Sbjct: 434 VERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEFRKQEEVLRK 493

Query: 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG 529
           FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++ +  
Sbjct: 494 FRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIMLADSE 553

Query: 530 NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV--ESTGASVTT 583
             K   +     ++   +     S+  E    +        +    Y++  E  G  VT 
Sbjct: 554 RTKTFEEDLKTYKAIEKILRNKCSKSAECNEFELEPVTDDDNVLPPYVLRSEDGGPRVTI 613

Query: 584 DSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE---EAYECELTLPSNAPFQT-IVGPTSR 639
           ++++  I+RYC  LPSD +    P  K K+ E     Y   L LP N+P +  + GPT  
Sbjct: 614 NTAIGHINRYCARLPSDPFTHLAP--KCKTVELKTGGYRSTLFLPINSPLRVPVTGPTMN 671

Query: 640 NKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTTKR 694
              L+++ V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+TKR
Sbjct: 672 CARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKR 731

Query: 695 KELHGTTPIRALSG 708
           ++ +       L G
Sbjct: 732 RQCYPKAIPECLRG 745



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1296 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1355

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            L++LG  + L   +  S FDP   W+ PG
Sbjct: 1356 LYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1764 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1823

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1824 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1875

Query: 1441 KRI 1443
             ++
Sbjct: 1876 PQV 1878



 Score = 43.9 bits (102), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 941  TPLSKFPSPEYETFAEYYKTKYNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1000

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1001 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQ 1059


>gi|317037196|ref|XP_001398755.2| dicer-like protein 1 [Aspergillus niger CBS 513.88]
          Length = 1493

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 197/706 (27%), Positives = 339/706 (48%), Gaps = 102/706 (14%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK----KLIIFLAP 101
           PR YQL++FE AK +NTIAVL+TG+GKT+IAV+L+K   +   ++  +    ++  FL  
Sbjct: 84  PREYQLELFERAKVQNTIAVLDTGSGKTLIAVLLLKHTLEKELNDRMEGKPHRIAFFLVD 143

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V L +QQ  V+R + D  V  ++GA G D W    W +   KN V+V T +IL   L  
Sbjct: 144 SVTLAYQQAAVLRNNLDQSVGHFFGAMGTDLWSKSVWDQHFQKNMVIVCTAEILNQCLLN 203

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSA 219
           +++ +  +  ++ DE HH   +HPY +I+++ Y +     +P++FGMTASP+  KG    
Sbjct: 204 SYIKMSQINILIFDEAHHTKKDHPYARIIRDSYLEEVYSKRPRIFGMTASPIDTKG---- 259

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
            D   + + LE  LDS++ T    + M +    A+                   +E  W 
Sbjct: 260 -DIVDEATRLEKLLDSRIATT---SNMSLLRQVARRP-----------------VERVW- 297

Query: 280 KFDASLSKL-QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338
               S +KL Q    + YK ++D+   +   L            ELG  C+  A    L 
Sbjct: 298 ----SFNKLEQPFATSLYKHLEDRFGDM-ACLEGIFRFAWQASSELGRWCSDRAWARALA 352

Query: 339 KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTK 398
             +  + E  + + ++ +    + E  +     +  A +I   + F  S     G +S K
Sbjct: 353 DDVLPKLEGSVRKTANSETSSNVPESAYKEILRITEASEIVKSYAF--SSPETFGQLSPK 410

Query: 399 LHELL-QLFLSFGKSTQVLCIIFVERIIAAKVVERFVK--KVPFLT-HLTVAYLTGSTTS 454
           +  L  +L   FG+ T+  CI+F ++   A ++    +   +PFL   + +   +G    
Sbjct: 411 VQVLREELARYFGRQTETKCIVFTQKRYTALILAELFQTLNIPFLRPGVLIGVRSGDLAG 470

Query: 455 VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
           ++ +T + Q   L  FR G++N LFAT V EEG+ +P+C+ V+RFDL +T+  Y+QSRGR
Sbjct: 471 MN-ITFRQQFISLVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFDLYQTLIQYVQSRGR 529

Query: 515 ARQHNSQFILMLERGNLKQRNKLFDIIRSERSVT-------------------DTALSRD 555
           AR  NS +  M+ERGNL+   +L ++  +E+ +                    DT L +D
Sbjct: 530 ARHFNSTYASMVERGNLEHEQRLLEVQDAEKMMQSFCRTLPEDRLLYGFDHDLDTVLQKD 589

Query: 556 PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE 615
                         +++ ++STGA +T  S+  ++ RY   L  +K ++ +  +      
Sbjct: 590 E-----------GNRTFRIKSTGAKLTYHSATAILARYASSLQYEKEFSAQVTYVVLPIN 638

Query: 616 EAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL-------LP 668
            A+ CE+ LP  +P + + G  +  K+++K+    + C  L +   L+DH        LP
Sbjct: 639 GAFVCEVILPEKSPIRGLTGSPAMKKSIAKRSAAFDTCLLLRKNKLLDDHFNSIYHRRLP 698

Query: 669 SV---------EEPSENNLISK-----KNESLPGAGTTKRKELHGT 700
           ++         +  S+ ++ISK     + + +P       KELHGT
Sbjct: 699 AMRNAKLAITSKRTSQYDMISKPSLWGRKQGMPP------KELHGT 738



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 154/433 (35%), Gaps = 117/433 (27%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P S   S    P+++ R+++ +++ Q      C S NF +   L LEA T         
Sbjct: 978  IPASTAFSCLAFPAIISRIDAYLISLQ-----GCESLNFTVKLDLALEAFTKDSDNTDEH 1032

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G   ++  ERLE LGD  LK A S  LF   P   E      R   +CN  
Sbjct: 1033 RAQQIHVQRGMGRNY--ERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKN 1090

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L     D+++  YIR   F    W   G L L               L GK  ++     
Sbjct: 1091 LFNAAVDKEIYKYIRSRGFSRHTWYPEG-LKL---------------LQGKDHSR----- 1129

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG----LIAALYMMKWLGIDADLEVSLVD 1236
              K        +  KTIAD  EALIGA  + GG       A+  +  L      +     
Sbjct: 1130 --KATTESKHALAEKTIADVCEALIGAALLSGGPDHRFDMAVKAVTTLVNSPSHKAERWK 1187

Query: 1237 DCITRASLRSYVPRINE------IKDIESKIGYEFTVKFLLQEAITHASVQEFY----CY 1286
            D I+  ++  Y  R  +       + IE K+ Y F    LL  A TH S    +    CY
Sbjct: 1188 DYISFYTIPKYQRRAADGAELYLSRKIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCY 1247

Query: 1287 QN--------------------------------------------------LYKHLQHC 1296
            Q                                                   L+ HL++ 
Sbjct: 1248 QRLEFLGDSLIDMVCVEDLFARFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYF 1307

Query: 1297 STLLLSQITEYVKSFPKPGETTDSGP------SMKAPKALGDLLESIVGAVLIDTKLNLD 1350
            S  L SQIT+Y +   +  E    G       +   PK L D++E+ VGAV +D+  N +
Sbjct: 1308 SAPLQSQITQYAEEI-QTAEGESEGAVDYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFE 1366

Query: 1351 EVWRIFKPILSPI 1363
             + R F+  + P 
Sbjct: 1367 VIERFFRDYIKPF 1379


>gi|348544424|ref|XP_003459681.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like
           [Oreochromis niloticus]
          Length = 1917

 Score =  262 bits (669), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 214/736 (29%), Positives = 340/736 (46%), Gaps = 109/736 (14%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A  RNTI  L TG+GKT IAV+L K+++  I+       K  +FL  
Sbjct: 43  YTPRKYQVELLEAALERNTIVCLNTGSGKTFIAVLLTKELSHQIRGPYQENAKRTVFLVN 102

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           T   V QQ   +R H+D  V EY   +    W  Q W +EI +N VLVMT  I L  L+ 
Sbjct: 103 TASSVVQQAAAVRTHSDLSVGEYTDLEETLAWTDQRWSREIIENQVLVMTCHIFLHVLKN 162

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
             L L  +  +V D+CH A  +HPY +IMK  +      P++ G+TAS  +  G     +
Sbjct: 163 KILPLSKINLVVFDDCHLAITDHPYCQIMK-LFEGCSCTPRILGLTAS--ILNGKCDPSE 219

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE---SCRFYDQSKFCGSDLKGKLEVSW 278
            E +I  LE  L S   T  D   ++ +    +E    C  Y       S L+ +L    
Sbjct: 220 LEQKIQNLERILKSNAETATDLVVLDRYASQPREVVLDCGSYVDKSGLSSRLQAEL---- 275

Query: 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC-- 336
              + +L  L    ++  K+  D     ++ L+D  A     L  LG  CA +A  I   
Sbjct: 276 ---NEALHFLNDCNISVVKEDRDPTFISKQVLNDCRA----VLQVLGPWCADKAAGIMVR 328

Query: 337 -LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E+ R+  L    F + +L  + +   L ++ F          +DL ++
Sbjct: 329 ELQKYIKHEQE-ELSRKFLL----FTDTILRKVHA---LCEEHF------SPACLDLKFV 374

Query: 396 STKLHELLQLFLSF---------------------------------------------- 409
           + K+  LL++   +                                              
Sbjct: 375 TPKVLRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKERPEAN 434

Query: 410 --GKSTQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV 462
                T +LC IIFVER   A V+ R +K+     P L +++  ++TG +   +    K 
Sbjct: 435 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQARNKQ 494

Query: 463 -------QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
                  Q+EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRA
Sbjct: 495 MEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 554

Query: 516 RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS---- 571
           R   S +I++ + G  K   +     ++   +     S+  E    +    +   +    
Sbjct: 555 RAPVSNYIMLADTGRTKAFEEDLSTYKAIEKILRNKCSKSVEVSEFEVEQVMDDDNILPP 614

Query: 572 YIV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAY-ECELTLPSNA 628
           Y++  E  G  VT ++++  I+RYC  LPSD +    P  K     + Y +  L LP N+
Sbjct: 615 YVLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTVEMGDGYFQSTLYLPINS 674

Query: 629 PFQTIV-GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKN 683
           P +  V GP      L+++ V L  CEKLH++G L+DHL+P    +V+   E +L  ++ 
Sbjct: 675 PLRVPVKGPVMNCARLAEKAVALVCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEE 734

Query: 684 ESLPG-AGTTKRKELH 698
            S+PG  G+TKR++ +
Sbjct: 735 TSVPGRPGSTKRRQCY 750



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 1/97 (1%)

Query: 1053 RNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARR 1112
            +N      LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  R
Sbjct: 1282 KNLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMR 1341

Query: 1113 SWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            S  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1342 SKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1378



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 72/123 (58%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D++++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1800 PKAMGDIFESLAGAIYMDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1859

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1860 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1911

Query: 1441 KRI 1443
             ++
Sbjct: 1912 PQV 1914



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 956  TPLSKFPSPEYETFAEYYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1015

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1016 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1074


>gi|225561826|gb|EEH10106.1| dicer-like protein [Ajellomyces capsulatus G186AR]
          Length = 1502

 Score =  262 bits (669), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 207/705 (29%), Positives = 332/705 (47%), Gaps = 110/705 (15%)

Query: 41  SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFK-KLI 96
           SI   PR YQL++FE AK  N IAVL+TG+GKT IAV+L+K + Q   A +++G   ++ 
Sbjct: 85  SIIHDPREYQLELFEKAKAANIIAVLDTGSGKTFIAVLLLKHVIQSELADRASGNPPRIS 144

Query: 97  IFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
            FL  +V LV+QQ  V++ + D  ++++ GA   D W  + W+K  +KN ++V T ++L 
Sbjct: 145 FFLVDSVTLVYQQAAVLKANIDQNIDKFCGAMQTDLWSKETWEKHFSKNMIIVCTAEVLY 204

Query: 157 DALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK---SDNKPKVFGMTASPVVR 213
             L ++F+ ++ +  ++ DE HHA   HPY +I+K+FY +   +  +PK+FGMTASP   
Sbjct: 205 QCLLRSFIRMEQINLLIFDEAHHAKKEHPYARIVKDFYLRRPEAQKRPKIFGMTASP--- 261

Query: 214 KGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273
             V + +D       LE+ LDSQ+ T  ++  +   +    E    YD            
Sbjct: 262 --VDAKVDVAKAAKNLETLLDSQIATASNQDVLRQAIARPTEQIWVYD------------ 307

Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
                 K DA+      S+ + YK M  +   +R +L       L     LG  C+    
Sbjct: 308 ------KLDAT------SETDLYKCMQSRFGKIR-ELEKIFFYALEASSMLGRWCSDWLW 354

Query: 334 KICLEKV----LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKA 389
              LE      L+ +      + SS      L+E + ++      A ++  +  FD    
Sbjct: 355 TFALEAAELPKLEGRVSKSYMQSSSRDHSKGLDEAIRLLRE----AGQLIRNHTFD--TP 408

Query: 390 VDL-GYISTKLHELL-QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAY 447
           VD   ++S+K+  L  +L L F + T   CI+FV++   A+++     ++    H+    
Sbjct: 409 VDCPAHLSSKVRLLRHELSLYFERHTDTKCIVFVQQRHTARLLAELFSRIG-TRHMQTGI 467

Query: 448 LTG---STTSVDALTPKVQKEVLESFRGGKVNLL--FATDVIEEGMHVPNCSYVIRFDLP 502
           L G           + + Q   L  FR G++N L  FAT V EEG+ +P+C+ +IRFDL 
Sbjct: 468 LIGVQHDGIGGANFSFRQQFLTLLKFRKGELNCLEQFATSVAEEGLDIPDCNLIIRFDLS 527

Query: 503 KTVSSYIQSRGRARQHNS-----------------QFILMLERGNLKQRNKLFDIIRSER 545
            T+  YIQSRGRAR  NS                 Q+  M+ERGNL   + + +  R+E 
Sbjct: 528 LTMIQYIQSRGRARHSNSIVWLSLYDSECLANGTLQYAHMVERGNLIHASCIQEAQRAEH 587

Query: 546 -----------------SVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVN 588
                            S  D  ++ D E  +         KS+ V STGA++T  SS+ 
Sbjct: 588 IMRRFCEALPEDRIIRGSSDDLGMNLDKERYY---------KSFTVHSTGATLTYPSSLV 638

Query: 589 LIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLV 648
           ++  Y   L  +K  +P+  +  +  + A+ CE  LP  +PF+ + G  S  K  ++Q  
Sbjct: 639 VLAHYASSLQYEKETSPQVNYFIERIDSAFVCEAILPEKSPFRGLTGKPSARKLHARQSA 698

Query: 649 CLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTK 693
             E C  L + G L+DH             +SK ++ LP     K
Sbjct: 699 AFETCLMLRKNGILDDH------------FVSKYHKRLPAMRNAK 731



 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 154/415 (37%), Gaps = 117/415 (28%)

Query: 1031 VMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT----------------TLGCCES 1074
            ++ R+ES +++ +      C      I + L LEALT                  G  ++
Sbjct: 1022 IISRIESYLISLE-----ACDKLQLSIETHLALEALTKDSDNTEEHRKEQIHFQRGMGKN 1076

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
            +  ERLE LGD  LK A S  LF   P   E     +R   +CN  L       KL  ++
Sbjct: 1077 Y--ERLEFLGDCFLKMATSISLFAMNPDNDEFDFHVKRMCLICNQNLFNTAVRLKLYEFV 1134

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
            R   F  R W   G + L               L GK  ++  +           + +G 
Sbjct: 1135 RTQGFSRRNWYPEG-IKL---------------LQGKAKSESAQ---------NKQALGD 1169

Query: 1195 KTIADCAEALIGAYYVGGGLIAAL-YMMKWLGIDADLEVSLVDDC---ITRASLRSY--- 1247
            KTIAD  EALIGA  + GG        +K + +  D +   V D    I   SL SY   
Sbjct: 1170 KTIADICEALIGASLLSGGKACRFDTAVKAVTVFVDSDNHRVSDWNSYIDLYSLPSYQIA 1229

Query: 1248 ---VPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY----CYQN------------ 1288
                 +++  K I +++GY FT   LL+ A THAS    +    CYQ             
Sbjct: 1230 QADAGQLDLAKQIGNRLGYYFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMV 1289

Query: 1289 --------------------------------------LYKHLQHCSTLLLSQITEYVKS 1310
                                                  L+KHL + S  L  QIT Y + 
Sbjct: 1290 CVEHLYHHYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHKHLLYISNALFGQITRYAEE 1349

Query: 1311 FP-KPGETTDSGPSMKA----PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
                  E+ DS  +       PK L D+LE+ +GA+ +D+  + + V   F+  L
Sbjct: 1350 IEVAVAESADSPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYL 1404


>gi|254281274|ref|NP_001156875.1| endoribonuclease Dicer [Taeniopygia guttata]
          Length = 1921

 Score =  262 bits (669), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 217/730 (29%), Positives = 351/730 (48%), Gaps = 97/730 (13%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  K  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +  + W  + W +E +K+ VLVMT  + L  LR 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSSLEITESWTKEKWSQEFSKHQVLVMTCHVALTVLRN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMK--EFYHKSDNKPKVFGMTASPVVRKGVSSA 219
            +LSL  +  +V DECH A  +HPY +IMK  E Y      P++ G+TAS  +  G    
Sbjct: 162 EYLSLSNINLLVFDECHLAIQDHPYREIMKICEDYPSC---PRILGLTAS--ILNGKCDP 216

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE---SCRFY-DQSKFCGSDLKGKLE 275
            + E +I +LE  L S   T  D   ++ +     E    C  Y D+S   G  LK    
Sbjct: 217 AELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLK---- 272

Query: 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYE 331
               + D +L+ L    ++      D     ++ LSD  A ++    +C D++  +   E
Sbjct: 273 ----ELDEALAFLNDCNISVLSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE 328

Query: 332 AVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVD 391
                L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + 
Sbjct: 329 -----LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIK 379

Query: 392 LGYISTKL--HELLQL-------------FLSFGKS-----------------------T 413
           L  I  K   +E  Q              ++S+  S                       T
Sbjct: 380 LLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFT 439

Query: 414 QVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV------ 462
            +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K       
Sbjct: 440 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFR 499

Query: 463 -QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S 
Sbjct: 500 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISN 559

Query: 522 FILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV--E 575
           +I++ +   +K   +     ++   +     S+  +A   +    V        Y++  +
Sbjct: 560 YIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDASETETEPIVDDDDVFPPYVLRPD 619

Query: 576 STGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK-YKSAEEAYECELTLPSNAPFQ-TI 633
                VT ++++  I+RYC  LPSD +    P  K ++  +  +   L LP N+P + +I
Sbjct: 620 ENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTWELPDHTFYSTLYLPINSPLRASI 679

Query: 634 VGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG- 688
           VGP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG 
Sbjct: 680 VGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGR 739

Query: 689 AGTTKRKELH 698
            G+TKR++ +
Sbjct: 740 PGSTKRRQCY 749



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1297 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1356

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1150
            L++LG  + L   +  S FDP   W+ PG +
Sbjct: 1357 LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYI 1387



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1804 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1863

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1864 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1915

Query: 1441 KRI 1443
             ++
Sbjct: 1916 PQV 1918



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|238814324|ref|NP_001154925.1| endoribonuclease Dicer [Danio rerio]
 gi|229485378|sp|Q6TV19.2|DICER_DANRE RecName: Full=Endoribonuclease Dicer
          Length = 1865

 Score =  261 bits (667), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 213/722 (29%), Positives = 340/722 (47%), Gaps = 89/722 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           + PR YQ+++ E A   NTI  L TG+GKT IAV+LIK+++  I+    K+  +FL    
Sbjct: 32  YTPRKYQVELLEAALEHNTIVCLNTGSGKTFIAVLLIKELSHQIRGENGKR-TVFLVNAA 90

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
             V QQ   +R H+D +V +Y  ++ +  W  + W +E+ +N VLVMT  I L  L+   
Sbjct: 91  SSVAQQASTVRTHSDLQVGDYM-SEDMTSWPEEMWNREMIENQVLVMTCHIFLHVLKNGV 149

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
           L L  +  +V DECH A   HPY +IMK       + P++ G+TAS  +  G     D E
Sbjct: 150 LPLSKINLLVFDECHLAITGHPYREIMK-ICEGCPSCPRILGLTAS--ILNGKCDPCDLE 206

Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESC----RFYDQSKFCGSDLKGKLEVSWS 279
            +I  LE  L S   T  D   ++ +    +E      ++ DQS        G  E   +
Sbjct: 207 EKIQNLEKILQSNAETATDLVVLDRYASQPREEVLDCGQYQDQS--------GLSERLLN 258

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC--- 336
           + D +L+ L    L+ +++  D     ++ L+D  A     L  LG  CA +A  I    
Sbjct: 259 ELDEALNFLNDCNLSVHREDRDPTFISKQVLNDCRA----VLTVLGPWCADKAAGIMVRE 314

Query: 337 LEKVLKAQEE--------------------CE-IYRQSSLQCKYFLEEV---LHVIGSAL 372
           L+K +K ++E                    CE  +  +SL  K+   +V   L ++    
Sbjct: 315 LQKYIKHEQEELNRKFLLFTDTILRKIHALCEEHFSPASLDLKFVTPKVIRLLEILHEYK 374

Query: 373 PLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKS-----------TQVLC-IIF 420
           P   + F    +  ++  D  Y+S    E                      T +LC IIF
Sbjct: 375 PFERQQFESVEWYNNRNQD-NYVSWSDSEDDDEDEEAEAKEKTEANFPSPFTNILCGIIF 433

Query: 421 VERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKEVLES 469
           VER   A V+ R +K+     P L +++  ++TG +   +    K        Q+EVL  
Sbjct: 434 VERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEFRKQEEVLRK 493

Query: 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG 529
           FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++ +  
Sbjct: 494 FRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIMLADSE 553

Query: 530 NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV--ESTGASVTT 583
             K   +     ++   +     S+  E    +        +    Y++  E  G  VT 
Sbjct: 554 RTKTFQEDLKTYKAIEKILRNKCSKSAECNDFELEPVTDDDNVLPPYVLRSEDGGPRVTM 613

Query: 584 DSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE---AYECELTLPSNAPFQT-IVGPTSR 639
           ++++  ++RYC  LPSD +    P  K K+ E     Y   L LP N+P +  + GP   
Sbjct: 614 NTAIGHVNRYCARLPSDPFTHLAP--KCKTVEMNTGGYRSTLFLPINSPLRVPVTGPVMN 671

Query: 640 NKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTTKR 694
              L+++ V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+TKR
Sbjct: 672 CARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKR 731

Query: 695 KE 696
           ++
Sbjct: 732 RQ 733



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1278 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1337

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            L++LG  + L   +  S FDP   W+ PG
Sbjct: 1338 LYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1366



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1748 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1807

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1808 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1859

Query: 1441 KRI 1443
             ++
Sbjct: 1860 PQV 1862



 Score = 43.9 bits (102), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 941  TPLSKFPSPEYETFAEYYKTKYNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1000

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1001 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQ 1059



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 22/149 (14%)

Query: 1192 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI------------DADLE---VSLVD 1236
            +  K+IADC EAL+G Y    G  AA   +  LG+             A+L+   + +  
Sbjct: 1530 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPPEKQSSGGSAELQYGWLKIPP 1589

Query: 1237 DCITR--ASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQ 1294
             C+     + R+    I+   + ESKI Y F  K  L +A THAS   +    + Y+ L+
Sbjct: 1590 RCMFEHPDAERTLNHLISGFLNFESKINYTFKNKAYLLQAFTHASYH-YNTITDCYQRLE 1648

Query: 1295 HCSTLLLSQ-ITEYVKSFPK---PGETTD 1319
                 +L   IT+++   P+   PG  TD
Sbjct: 1649 FLGDAILDYLITKHLYEDPRQHSPGVLTD 1677


>gi|296424770|ref|XP_002841919.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638171|emb|CAZ86110.1| unnamed protein product [Tuber melanosporum]
          Length = 1402

 Score =  261 bits (667), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 206/664 (31%), Positives = 307/664 (46%), Gaps = 101/664 (15%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ----AIKSNGFKKLIIFLAP 101
           PR YQL++FE+AK RNTIAVL+TG+GKT+IA +LI+ I +    +  +    ++  FL  
Sbjct: 17  PREYQLELFEIAKTRNTIAVLDTGSGKTLIACLLIRHIIEKELESRAAGNHPRVSFFLVH 76

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
            V LV QQ  V+R + D ++ EY G  GV +W  + W   +    V+VMT  IL   L  
Sbjct: 77  NVTLVFQQAAVLRCNIDAKIGEYCGDMGVGDWRKETWNDILKGQQVIVMTADILYSCLTH 136

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKSDNKPKVFGMTASPVVRKG--VS 217
           AF+ +  +  +  DE HHA   H + +I+++FY     + +PK+FGMTASPV  +   V 
Sbjct: 137 AFIKMKDINLLCFDEAHHAKKRHSFARIIQDFYLPEPENTRPKIFGMTASPVGGRSDVVQ 196

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
           +A+D       LE  L S++ T  D                                   
Sbjct: 197 AAVD-------LEKLLHSRIATTSD----------------------------------- 214

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL 337
                  L+ LQGS ++  +++   +  LR Q+  +         ELG  CA    K  L
Sbjct: 215 -------LALLQGS-ISRPEEVVTAYPKLRPQIFAFAE---LASSELGPWCADVMWKFAL 263

Query: 338 ------------EKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
                       E+ L AQ E E   +   +  Y  E    V    +P            
Sbjct: 264 SETQARKFERMTERRLDAQAEIESIARIEKELSYLQEAADIVCKYNIP------------ 311

Query: 386 YSKAVDLGYISTKLHELLQLFLSFGKSTQVL--CIIFVERIIAAKVVERFVK--KVPFL- 440
              + D  ++S K+  LL  +L    S Q    CIIFV R   A V+    K  K+ +L 
Sbjct: 312 -PPSADSSHLSPKVL-LLHAYLKEIYSVQTTDKCIIFVSRRYTATVLGELFKWLKIKYLQ 369

Query: 441 THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
             + +  LTGS       T + Q   +  FR GK+N L AT V EEG+ +P+CS VIRFD
Sbjct: 370 IGVLLGSLTGSRVPGTNFTLREQMITVSKFRQGKLNCLIATSVAEEGLDIPDCSLVIRFD 429

Query: 501 LPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACF 560
           L +T+  Y+QSRGRAR   S++I MLE GN      L D+  SE+ + D   S  P    
Sbjct: 430 LYRTMIQYVQSRGRARSSVSKYIHMLESGNRSHLEMLSDVRNSEKIMRDFCRSL-PADRI 488

Query: 561 LKACT--------YVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYK 612
           L + +          +   +I   TGA +T +SS+ ++  Y ++LP +     +P+F  +
Sbjct: 489 LDSTSPDESSVLENTEGPYHIEPGTGAKLTMNSSMLILFHYTQLLPQEDNELLQPLFTVR 548

Query: 613 SAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE 672
              E +  E+TLP+ +P Q I G     K  +KQ      C +L + G L+++L+P    
Sbjct: 549 RVSEGFISEVTLPTLSPVQHIEGAPMPTKRAAKQSASFFTCLELRRKGELDENLMPKSSR 608

Query: 673 PSEN 676
              N
Sbjct: 609 TKRN 612



 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 159/425 (37%), Gaps = 106/425 (24%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P  V+    + PS + R++S + A ++     C      I   + LEA+T         
Sbjct: 891  IPSQVIHMAMIFPSFITRIDSYLHAWEV-----CSLLGMEIDVGVALEAITKDSENTHEH 945

Query: 1068 -----TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
                 +L      + ERLE LGD  LK A S  L+  Y    E +L  +R   +CN  L 
Sbjct: 946  GSAQVSLQRGMGSNYERLEFLGDCFLKLATSLSLYTAYHADDECELHVKRMVLICNRYLF 1005

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
                + K+  YI+ + F  R W    +L                 L GK  TQ       
Sbjct: 1006 TKAKEMKIPEYIQTAGFSRRTWYPKMKL-----------------LMGKGTTQHN----S 1044

Query: 1183 KPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDD---CI 1239
               ++ HR +  K+I+D  EALIGA  +  GL  A  ++  +    +    +  D   C 
Sbjct: 1045 SKEEISHR-LADKSISDVCEALIGAALIDKGLDGATQIVTAILRTPEHSQKVWADYYNCY 1103

Query: 1240 TRASLRSYVPRINEIK---DIESKIGYEFTVKFLLQEAITHAS----------------- 1279
            T+ + +   P  + I+   DIE  +GY+F    LL  A+TH S                 
Sbjct: 1104 TKPAYQLQEPSPSHIRVAEDIEELVGYKFKHPRLLISALTHPSLPFTWDRVPSYQRLEFL 1163

Query: 1280 ---VQEFYCYQNLYKHLQHCSTLLLSQ--------------------------------- 1303
               V +  C + +++   H     L++                                 
Sbjct: 1164 GDAVLDLVCVRYMFQKYPHADPQWLTEHKMAMVSNKFLGMVAVEMGFHRKLRRMGSVLDH 1223

Query: 1304 -ITEYVKSFPKPGETT----DSGPSMKA-PKALGDLLESIVGAVLIDTKLNLDEVWRIFK 1357
             I EY          +    D   S+KA PKAL D+LE+ +GAV +D+    + V R+  
Sbjct: 1224 AIREYEVDIQDAKANSNGAVDFWTSLKAPPKALPDVLEAFIGAVFVDSGFQYNIVERLVN 1283

Query: 1358 PILSP 1362
              + P
Sbjct: 1284 TFILP 1288


>gi|158706452|sp|A2RAF3.2|DCL1_ASPNC RecName: Full=Dicer-like protein 1; Includes: RecName:
           Full=Endoribonuclease dcl1; Includes: RecName:
           Full=ATP-dependent helicase dcl1
          Length = 1525

 Score =  261 bits (667), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 198/705 (28%), Positives = 340/705 (48%), Gaps = 101/705 (14%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK----KLIIFLAP 101
           PR YQL++FE AK +NTIAVL+TG+GKT+IAV+L+K   +   ++  +    ++  FL  
Sbjct: 117 PREYQLELFERAKVQNTIAVLDTGSGKTLIAVLLLKHTLEKELNDRMEGKPHRIAFFLVD 176

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V L +QQ  V+R + D  V  ++GA G D W    W +   KN V+V T +IL   L  
Sbjct: 177 SVTLAYQQAAVLRNNLDQSVGHFFGAMGTDLWSKSVWDQHFQKNMVIVCTAEILNQCLLN 236

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSA 219
           +++ +  +  ++ DE HH   +HPY +I+++ Y +     +P++FGMTASP+  KG    
Sbjct: 237 SYIKMSQINILIFDEAHHTKKDHPYARIIRDSYLEEVYSKRPRIFGMTASPIDTKG---- 292

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
            D   + + LE  LDS++ T    + M +    A+                   +E  W 
Sbjct: 293 -DIVDEATRLEKLLDSRIATT---SNMSLLRQVARRP-----------------VERVW- 330

Query: 280 KFDASLSKL-QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338
               S +KL Q    + YK ++D+   +   L            ELG  C+  A    L 
Sbjct: 331 ----SFNKLEQPFATSLYKHLEDRFGDM-ACLEGIFRFAWQASSELGRWCSDRAWARALA 385

Query: 339 KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTK 398
             +  + E  + + ++ +    + E  +     +  A +I   + F  S     G +S K
Sbjct: 386 DDVLPKLEGSVRKTANSETSSNVPESAYKEILRITEASEIVKSYAF--SSPETFGQLSPK 443

Query: 399 LHELL-QLFLSFGKSTQVLCIIFVERIIAAKVVERFVK--KVPFLT-HLTVAYLTGSTTS 454
           +  L  +L   FG+ T+  CI+F ++   A ++    +   +PFL   + +   +G    
Sbjct: 444 VQVLREELARYFGRQTETKCIVFTQKRYTALILAELFQTLNIPFLRPGVLIGVRSGDLAG 503

Query: 455 VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
           ++ +T + Q   L  FR G++N LFAT V EEG+ +P+C+ V+RFDL +T+  Y+QSRGR
Sbjct: 504 MN-ITFRQQFISLVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFDLYQTLIQYVQSRGR 562

Query: 515 ARQHNSQFILMLERGNLKQRNKLFDIIRSE------RSV------------TDTALSRDP 556
           AR  NS +  M+ERGNL+   +L ++  +E      R++             DT L +D 
Sbjct: 563 ARHFNSTYASMVERGNLEHEQRLLEVQDAEMMQSFCRTLPEDRLLYGFDHDLDTVLQKDE 622

Query: 557 EACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE 616
                        +++ ++STGA +T  S+  ++ RY   L  +K ++ +  +       
Sbjct: 623 -----------GNRTFRIKSTGAKLTYHSATAILARYASSLQYEKEFSAQVTYVVLPING 671

Query: 617 AYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL-------LPS 669
           A+ CE+ LP  +P + + G  +  K+++K+    + C  L +   L+DH        LP+
Sbjct: 672 AFVCEVILPEKSPIRGLTGSPAMKKSIAKRSAAFDTCLLLRKNKLLDDHFNSIYHRRLPA 731

Query: 670 V---------EEPSENNLISK-----KNESLPGAGTTKRKELHGT 700
           +         +  S+ ++ISK     + + +P       KELHGT
Sbjct: 732 MRNAKLAITSKRTSQYDMISKPSLWGRKQGMPP------KELHGT 770



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 154/433 (35%), Gaps = 117/433 (27%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P S   S    P+++ R+++ +++ Q      C S NF +   L LEA T         
Sbjct: 1010 IPASTAFSCLAFPAIISRIDAYLISLQ-----GCESLNFTVKLDLALEAFTKDSDNTDEH 1064

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G   ++  ERLE LGD  LK A S  LF   P   E      R   +CN  
Sbjct: 1065 RAQQIHVQRGMGRNY--ERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKN 1122

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L     D+++  YIR   F    W   G L L               L GK  ++     
Sbjct: 1123 LFNAAVDKEIYKYIRSRGFSRHTWYPEG-LKL---------------LQGKDHSR----- 1161

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG----LIAALYMMKWLGIDADLEVSLVD 1236
              K        +  KTIAD  EALIGA  + GG       A+  +  L      +     
Sbjct: 1162 --KATTESKHALAEKTIADVCEALIGAALLSGGPDHRFDMAVKAVTTLVNSPSHKAERWK 1219

Query: 1237 DCITRASLRSYVPRINE------IKDIESKIGYEFTVKFLLQEAITHASVQEFY----CY 1286
            D I+  ++  Y  R  +       + IE K+ Y F    LL  A TH S    +    CY
Sbjct: 1220 DYISFYTIPKYQRRAADGAELYLSRKIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCY 1279

Query: 1287 QN--------------------------------------------------LYKHLQHC 1296
            Q                                                   L+ HL++ 
Sbjct: 1280 QRLEFLGDSLIDMVCVEDLFARFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYF 1339

Query: 1297 STLLLSQITEYVKSFPKPGETTDSGP------SMKAPKALGDLLESIVGAVLIDTKLNLD 1350
            S  L SQIT+Y +   +  E    G       +   PK L D++E+ VGAV +D+  N +
Sbjct: 1340 SAPLQSQITQYAEEI-QTAEGESEGAVDYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFE 1398

Query: 1351 EVWRIFKPILSPI 1363
             + R F+  + P 
Sbjct: 1399 VIERFFRDYIKPF 1411


>gi|391348710|ref|XP_003748587.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
          Length = 1732

 Score =  261 bits (666), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 210/692 (30%), Positives = 327/692 (47%), Gaps = 80/692 (11%)

Query: 21  PDMGSSGHDHAVDGPSSSTNSINFI---PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAV 77
           P MGSS  +  V       +S+  I    R YQ+++FE AK+ NTI  L TG GKT I+V
Sbjct: 88  PSMGSSIRND-VAMARIEKDSLQLIEEQARSYQVELFEYAKKHNTIVCLGTGTGKTFISV 146

Query: 78  MLIKDIAQAIKSNGFK--------KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKG 129
           +LIK +   +              K  IFLAP V LV QQ  V+  H   +V  Y G+  
Sbjct: 147 LLIKYLEHQVTGPWLDESGRTPVGKRTIFLAPNVPLVEQQSAVLACHMTVKVGTYVGSMN 206

Query: 130 VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189
            D W S+ W KE+ ++ VLVMTP++   A+   F+ L+ +  +V+DECH ATG  PY KI
Sbjct: 207 TDRWTSEHWNKELQEHGVLVMTPEVCRIAVDHGFIPLENINLLVLDECHRATGVDPYVKI 266

Query: 190 MKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEV 248
           M+ + +  ++++P++ G+TAS V  +   S   C+   + L   L ++  + E   ++E 
Sbjct: 267 MENYKNLNANDRPRILGLTASVVNAQVPISIRSCDATSAHLIDILGARFPSREKVRDLEA 326

Query: 249 FVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS-LSKLQGSQLNCYKDMDDKHKTLR 307
            + S   +   ++  +F    ++  + VS    DA  +  +   ++   KD  D     R
Sbjct: 327 CLFSTARTAS-HNVVRFGTKPVE--IIVSHEDHDAEKVLPIDEEKVALLKDCAD-FAEFR 382

Query: 308 KQLSDYHAKILYCLDELGLICAYEAVKIC---LEKVLKAQEECEIYRQSSLQCKYFLEEV 364
           K + +     + C    G  CA + ++     L+K L   +  E +R  +         V
Sbjct: 383 KMIKNLAKTYVSC----GAFCAKQLLEFRERELDKALNLPDCAEGFRDHA--------HV 430

Query: 365 LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI 424
              I  AL        DF   +     +  +  K+  LLQ+   F   T    +   ER+
Sbjct: 431 KRDIYKALN-------DF---FGPKPSIHDVPPKMKTLLQIIKQFEGKTLSAVVFVQERL 480

Query: 425 IAAKVVERFVKKVPFLTHLT---------VAYLTGSTT-----SVDA----LTPKVQKEV 466
           +A      +V  + ++THL+          +++ G         VD     +  K QK+V
Sbjct: 481 VA------YVLYI-WMTHLSREDEFSFVNCSFIVGQNQGAYGRDVDQESMKMNAKAQKKV 533

Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
           +  FRGG  NL+FAT VIEEGM VP C+ ++RFD P  V SY QS+GRAR   S ++L+ 
Sbjct: 534 MRDFRGGIYNLMFATSVIEEGMDVPACNLIVRFDPPMDVRSYTQSKGRARAKPSLYVLLS 593

Query: 527 ERGNLKQRNKLFDIIR-SERSVTD-TALSRDPEAC-----FLKACTYVKTKSYIVESTGA 579
               L +   L D  + +E+ V     + R P        FLK         Y+VE   A
Sbjct: 594 SESELAKTKALLDSYQETEQLVMHCCGIERSPPTASQSLEFLKEDP--DLPPYVVEHARA 651

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSR 639
            +T  S++++IH YC+     KY    P F ++     Y C LT+P   P +  V   +R
Sbjct: 652 RITAQSAISVIHSYCQQFMRMKYPNVFPFFDFEETAGGYICTLTMPIVCPLREKVSNATR 711

Query: 640 ---NKNLSKQLVCLEACEKLHQVGALNDHLLP 668
              +K+ +K  V LE C++LH  G L+D+LLP
Sbjct: 712 PFESKDKAKMFVALEMCKRLHACGELSDNLLP 743



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 96/259 (37%), Gaps = 78/259 (30%)

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGID-ADLEVSLVDDC----------ITRA 1242
            +K   D  EAL G Y    G I AL   +W+G+D  D E +   D           I   
Sbjct: 1372 AKVGGDVVEALAGTYLEQCGPIGALRFFRWIGMDLGDTESNNFLDAFKLDFSAAQNIPAE 1431

Query: 1243 SLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE-------------------- 1282
             L+SY      I+ +E +I + F  K L+ +AITH S ++                    
Sbjct: 1432 CLKSYQ---YLIEKVEKQIDFTFKSKGLVLQAITHHSCRDHLLTEDYNRLAFIGEAVADY 1488

Query: 1283 ---FYCY------------------------------QNLYKHLQHCSTLLLSQITEYVK 1309
                Y Y                                L+  L + ++ L S I +Y++
Sbjct: 1489 LLTLYIYGLSSNLDPGQLSDLRSALINNQVTAYAVVRAELHTVLLYTNSKLFSAIRKYLE 1548

Query: 1310 SFPKPG---------ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
            +    G           TD     + P+ L  +L+SI+GAV ID+  + + VWRI   I+
Sbjct: 1549 NIDDIGLRLNTVLGDWETDDAEEAEVPRPLARILQSILGAVFIDSGKSFESVWRILVRIM 1608

Query: 1361 SPIVT--PDKLELPPLREL 1377
               +      + +PP  EL
Sbjct: 1609 GHEIALFSRNVPIPPTTEL 1627



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 2/97 (2%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            I++ALTT    E F +ERLELLGDS L+   +  +    P     +L+  R + V N  L
Sbjct: 1198 IMKALTTKASQEVFDLERLELLGDSFLQIVATFSVLDRNPNMSISELNVLRQYEVNNRHL 1257

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCE 1158
                 D+KL   +    F       P  L  RP+P E
Sbjct: 1258 LCRAHDKKLTSVLEAYPFKATHNFLP--LGCRPIPHE 1292


>gi|440468299|gb|ELQ37466.1| RNase3 domain-containing protein [Magnaporthe oryzae Y34]
 gi|440485699|gb|ELQ65629.1| RNase3 domain-containing protein [Magnaporthe oryzae P131]
          Length = 1658

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 196/651 (30%), Positives = 327/651 (50%), Gaps = 69/651 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ----AIKSNGFKKLIIFLAP 101
           PR YQ+++FE AK++NTIAVL+TG GKT+IA++LI+ I +    A      K++  FL  
Sbjct: 108 PREYQIELFERAKQKNTIAVLDTGTGKTLIAILLIRHIIELELGARWQGREKRITFFLVD 167

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS-QCWQKEINKNDVLVMTPQILLDALR 160
            V LV QQ D IR + DF V   +G    + W S + ++K + + +V+V T +IL   L 
Sbjct: 168 KVALVRQQTDHIRANLDFPVTGLHGDTVRNLWYSKEYFEKLLQEQEVVVCTAEILYRCLH 227

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN---KPKVFGMTASPVVRKGVS 217
           +++L++  V  +V DE HHA  NH Y +I+K+FY   ++   +P++FGMTASP+  K   
Sbjct: 228 RSYLNISQVSLVVFDEAHHAKKNHVYARIIKDFYLMEEDCQKRPRIFGMTASPIDTK--D 285

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
           + +  E    ELES L S++ TI D+  ++V     +E  + Y                 
Sbjct: 286 TCISYERATHELESLLHSEIATISDRDLLKVIGSRPQEVRKSY----------------- 328

Query: 278 WSKFDASLSKLQGSQL-NCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC 336
                A + + + ++L N  +++   H   ++          + + ELG  CA +  ++C
Sbjct: 329 -----ARVLRQENTELCNQLRELVGNHPLFKQTFDSAE----FAVTELGAWCADKLWELC 379

Query: 337 LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS 396
             +   +  +  +   S  +    + E  H + +A    + + L   + +S   D G +S
Sbjct: 380 FREEAVSTLDGRV-EGSRARDPDEVGESSHEVSNA---REALSLVQQWSFSPPED-GSLS 434

Query: 397 TKLHELLQL----FLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH---LTVAYLT 449
           TK H+L+++    F        + CI+FV+R   A ++    ++    T    L  A+L 
Sbjct: 435 TKTHKLIEILAECFSQASAGNAIQCIVFVKRRDTAVLLNALCEQAEIRTKIPDLKGAFLI 494

Query: 450 GSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
           G+    +A   T + Q++ +  FR G++N LFAT + EEG+ +P C+ VIRFDL  T   
Sbjct: 495 GAGRGGNAAFTTTRQQEQTVSRFRDGEINCLFATSIAEEGLDIPGCNVVIRFDLHGTTIQ 554

Query: 508 YIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACT-- 565
           YIQSRGRAR  NS FI M E GN +   + F    +E+ + D  LS   +    KA    
Sbjct: 555 YIQSRGRARMRNSWFIHMTEFGNPEHNRRWFQDRVNEQKMRDFCLSLPKDRIMEKAEVDD 614

Query: 566 ----YVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPS--DKY----YTPKPIFKYKSAE 615
                   K ++V  + AS+T   S+ ++  +   LP+  D+     YT  P+F      
Sbjct: 615 VLRGDQSQKIFVVPGSKASLTFKQSLVVLAEFVATLPARPDEILSVDYTVVPVFG----- 669

Query: 616 EAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL 666
             ++ E+ LP+++P ++ +G   R+K L+K       C +L+    L+DHL
Sbjct: 670 -GFQGEVYLPASSPLRSAMGGVYRSKQLAKCAAAYAMCIQLYNSNYLDDHL 719



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 162/468 (34%), Gaps = 137/468 (29%)

Query: 995  GMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRN 1054
            G N+  PQ   ++  E L+   +P+  V   Y  P+++ RLE+ +++ +      C +  
Sbjct: 992  GENSTGPQT-CYLVLETLLISQIPVDTVVMAYTFPAIIYRLENSLISLEA-----CQNLG 1045

Query: 1055 FHIPSSLILEALT----------------TLGCCESFSMERLELLGDSVLKYAVSCHLFL 1098
              IP  + L A+T                  G  +++  ERLE LGD  LK A S  L+ 
Sbjct: 1046 LDIPIDIALIAMTKDSDNSDDHDEAPINFQSGMGQNY--ERLEFLGDCFLKMATSIALY- 1102

Query: 1099 TYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCE 1158
            T  +  E +    R   +CN  L     +  LQ +IR  +F+ R W  PG          
Sbjct: 1103 TLVEGDEFEYHVERMLDICNKNLLNWALESNLQEHIRSKSFNRRTWYPPG---------- 1152

Query: 1159 CGVDTLEVPLDGKFFTQDTKVVVGKPCDM-GHRWMGSKTIADCAEALIGAYYVGGG---- 1213
                               K++ GK  ++     +G K+IAD  EALIGA Y+       
Sbjct: 1153 ------------------LKLLKGKKTEVDDEHALGDKSIADVCEALIGAAYLTAQAQSS 1194

Query: 1214 -----LIAALYMM---KWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEF 1265
                  + A+ +M   K   + A  +      C    S      ++     I++K+GY F
Sbjct: 1195 PNFDLAVKAVTVMTHSKTHTMQAWSDYYASYQCPEWLSTPPSQTQLELCSQIKNKMGYRF 1254

Query: 1266 TVKFLLQEAITHASVQEFY----CYQNL-------------------------------- 1289
                LL+ A  H S    Y     YQ L                                
Sbjct: 1255 KNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLFKKHPDKDPQWLTEHK 1314

Query: 1290 ------------------YKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKA----- 1326
                              ++HL H    L   ITE+ +   K  E        +      
Sbjct: 1315 MAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQLAVRRGQREED 1374

Query: 1327 ------------PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSP 1362
                        PK L D+LE+ VGA+ +DT  +   V   F   + P
Sbjct: 1375 YARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKP 1422


>gi|336380656|gb|EGO21809.1| hypothetical protein SERLADRAFT_441040 [Serpula lacrymans var.
           lacrymans S7.9]
          Length = 1460

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 198/684 (28%), Positives = 319/684 (46%), Gaps = 86/684 (12%)

Query: 41  SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLA 100
           S + +PR YQ ++F  A+  N IA L+TG+GKT I+++LIK I   ++    +K+I+FL 
Sbjct: 12  SESILPRRYQEEIFRRAQNSNVIAALDTGSGKTFISILLIKWIV--LQEKAKRKVIVFLV 69

Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
           P V LV QQ D I  HT   V+ ++G+  +D  D   W+K   ++D+ V   QI L+ L 
Sbjct: 70  PKVALVKQQADSIAAHTPLRVKMFHGSLDLDLTDRANWKKSFEQSDLTVAAAQIFLNILT 129

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-SDNKPKVFGMTASPVVRKGVSSA 219
            +  S++ V  ++ DECHH   NH Y  IM E++     ++PKVFGMTASP+      + 
Sbjct: 130 HSHWSVEKVSLLIFDECHHTRKNHAYNGIMHEYFQTIPSDRPKVFGMTASPIW-----NP 184

Query: 220 MDCEGQISELESTLDSQVFTIEDKTE------------MEVFVPSAKESCRFYDQSKFCG 267
            D EG ++ LE  LD+ V  + +  E            ++ F P +      Y     C 
Sbjct: 185 KDAEGSLATLEKNLDATVIAVREHVEELQENSPRPVEVIKEFSPPSDTYDYLYPTLWDCL 244

Query: 268 SDLKGKLEVSWS------KFDASLSKLQG--SQLNCYKDMDDKHKTLRKQLSDYHAKILY 319
           S     +E++        K+  + + L    + L  Y D+  +      +L     +   
Sbjct: 245 SLFTNAVEINIPVDKLHMKYQMTRNSLGAFSADLFLYTDIKTRLIHFIDELESSQNETFL 304

Query: 320 CLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
            LD               +  +   E  E  +         LE++  ++    P     F
Sbjct: 305 GLD-------------GFDHHIDVDESSESAQSQFPAISPDLEQIDAILSEFRP-----F 346

Query: 380 LDFGFDYSKA---VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436
            D G +       V L + + K++ L+++ L     T    I+FVE+   A  + + +  
Sbjct: 347 FDSGTEVPAVPIPVPLAWCTPKVNALVEVLLEHYSPT-FHAIVFVEQRQVAACLAKILPC 405

Query: 437 VPFLT-HLTVAYLTGS----------TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE 485
           +P L  ++  A L G            ++   +    Q++ +E FR GK+NLL AT V E
Sbjct: 406 IPELRGYVRCAELVGHGANHGHGPVVNSNARGMGLARQQDTVELFRQGKLNLLVATSVAE 465

Query: 486 EGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSER 545
           EG+H P C  V+RFD  + +  Y+QSRGRAR   S F++M ++ +     +    ++SE 
Sbjct: 466 EGLHFPACDIVVRFDPIQHMVGYVQSRGRARTKTSTFVIMAQKDHSAHLVRYNAFLKSEP 525

Query: 546 SVTDTALSR-DPEACFLK---------------ACTYVKTKSYIVESTGASVTTDSSVNL 589
            +     +R +P A  L                A   V+ + YIV STGA +T DS+VNL
Sbjct: 526 ELKRVYQTREEPAATRLDPGEDSEEGEVEEDDPADVAVRER-YIVPSTGAVLTYDSAVNL 584

Query: 590 IHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQT----IVGPTSRNKNLSK 645
           ++  C ++P D  YTP  + KY      Y   L LPS+ P         GP  R+K  +K
Sbjct: 585 LNHLCSLIPHDA-YTPPQLPKYSG---DYAVMLELPSSLPLPIDRLFFSGPERRSKREAK 640

Query: 646 QLVCLEACEKLHQVGALNDHLLPS 669
           + V   A ++LH++   +D+LLP+
Sbjct: 641 RAVAFLAVKELHRLDVFDDYLLPA 664



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 119/275 (43%), Gaps = 36/275 (13%)

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            +P +   RV     V ++  LLP + +R+  +  A Q R E+        I   L++EA 
Sbjct: 921  VPKDACRRVHFSEDVYRAFLLLPKLCRRVTDVYRARQERIELGLPM----IAEDLLIEAS 976

Query: 1067 TTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
            T      +F+ +RLE LGDSVLK   + H+   YP +HEGQLS  R  +V N TL     
Sbjct: 977  TLPTTSLTFNNQRLETLGDSVLKLGSTVHIMNKYPHRHEGQLSHLRQNSVSNRTLLSRAK 1036

Query: 1127 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD 1186
            + +L+ ++   + +   W                     VP       +DT   + +   
Sbjct: 1037 EIELERFLNSESHNLHFW------------------RYTVP-------EDTDSTLCRIRR 1071

Query: 1187 MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGID--ADLEVSLVDDCITRASL 1244
               R    +++ DC EA +GA +V GG+  AL     LG+     +  SL     +R   
Sbjct: 1072 STRREFPRRSLQDCMEATLGAAFVTGGIDMALQAGTALGLSFGGPIPWSLK---YSRRPE 1128

Query: 1245 RSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
             S  P +    D++  + YEF    LL EA TH S
Sbjct: 1129 SSPAPHL--FADLQESLCYEFHRGDLLVEAATHPS 1161



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 1061 LILEALT--TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118
            L++EA T  +     S S +RLE LGD+V+   V  +L+  +P+ + GQLSA RS AVC 
Sbjct: 1152 LLVEAATHPSFATSASSSYQRLEFLGDAVIDLVVLNYLYRRFPQANSGQLSAARSRAVCG 1211

Query: 1119 STLHKLGTDR 1128
             TL  +   R
Sbjct: 1212 PTLASISVRR 1221


>gi|119478976|ref|XP_001259517.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
 gi|158706438|sp|A1DE13.1|DCL1_NEOFI RecName: Full=Dicer-like protein 1; Includes: RecName:
           Full=Endoribonuclease dcl1; Includes: RecName:
           Full=ATP-dependent helicase dcl1
 gi|119407671|gb|EAW17620.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
          Length = 1538

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 192/646 (29%), Positives = 326/646 (50%), Gaps = 65/646 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD-IAQAI--KSNGF-KKLIIFLAP 101
           PR YQ+++FE AK +NTIAVL+TG+GKT+IAV+L++  I   +  ++NG   ++  FL  
Sbjct: 127 PREYQIELFERAKTQNTIAVLDTGSGKTLIAVLLLRHTILNELDNRANGKPHRVSFFLVD 186

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V L +QQ  V+R + D  V  ++GA G D WD + W + + +N V+V T +IL   L  
Sbjct: 187 SVTLAYQQAAVLRNNIDQNVAHFFGAMGTDLWDKRTWDEHLQRNMVIVCTAEILNQCLLN 246

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSA 219
           +++ +D +  ++ DE HHA  +HPY +I+++ Y K+    +P+VFGMTASP+  KG    
Sbjct: 247 SYVKMDQINLLIFDEAHHAKKDHPYARIIRDSYFKAQPSQRPRVFGMTASPIDTKG---- 302

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
            D     + LE+ LDS++ T    T +   V    E    Y+           +LE   S
Sbjct: 303 -DITEAATRLETLLDSRIATTSKITLLREVVSRPIEKVWAYN-----------RLE---S 347

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339
            F   L          YK MD ++  + K L   +    +   ELG  C+  A    L  
Sbjct: 348 PFATEL----------YKLMDTRYGNI-KVLEGVYRFAWHASSELGKWCSDRAWWHALAD 396

Query: 340 VLKAQEECEIYR---QSSLQCKY--FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGY 394
            +  + E  I +    ++L  ++    ++++ +  ++  + +  F D           G 
Sbjct: 397 DVLPKLEGNISKLVESNTLNAEHGAVFKDIIRIREASETVKNYSFADPELP-------GE 449

Query: 395 ISTKLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERF--VKKVPFLT-HLTVAYLT 449
           +S K+ +LL++ LS  F  +T   CI+F ++   AK++     V  +P L   + +    
Sbjct: 450 LSPKV-QLLRMELSKHFSDTTGTKCIVFTQKRYTAKILNELFTVLNIPHLRPGVLIGVRP 508

Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
           G    ++ +T + Q   L  FR G++N LFAT V EEG+ +P+C+ V+RFDL +T+  Y+
Sbjct: 509 GDIGGMN-VTFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFDLYRTLIQYV 567

Query: 510 QSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTY--- 566
           QSRGRAR   S + +M+E+ N +   +L +I  +E+ +        PE   L    +   
Sbjct: 568 QSRGRARHCTSTYAIMVEKDNAEHEGRLKEIREAEK-IMQRFCETLPEDRILHGNDHDLD 626

Query: 567 ------VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYEC 620
                    +++ V+STGA +T  S++ ++ RY   L  +K   P+  +       AY C
Sbjct: 627 SLLQEEEGRRTFTVKSTGAKLTYHSAIAILARYASSLQYEKETVPQVTYVVGHVSNAYVC 686

Query: 621 ELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL 666
           E+ LP  +P + + G  +  K ++KQ    + C  L +   L+D+ 
Sbjct: 687 EVILPEKSPIRGLTGSPAIRKAVAKQSAAFDTCLLLRKHRLLDDYF 732



 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 158/434 (36%), Gaps = 118/434 (27%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P S+V +    P+++ RL+S ++A +      C      I     LEA T         
Sbjct: 1021 IPTSIVSTCLAFPAIISRLDSYLIALEA-----CDELELVIRPDFALEAFTKDSDNTEEH 1075

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G  +++  ERLE LGD  LK A S  L+   P   E      R   +CN  
Sbjct: 1076 RGQQIHFQRGMGKNY--ERLEFLGDCFLKMATSIALYTQNPDDDEFDYHVNRMCLICNKN 1133

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L      +++  YIR   F    W  P  L+L               L GK  ++     
Sbjct: 1134 LFNTAIKKQIYRYIRSRGFSRHIWY-PDGLTL---------------LHGKDHSK----- 1172

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG----LIAALYMMKWLGIDADLEVSLVD 1236
              K    G   +G KTIAD  EALIGA  + GG       A   +  L       VS   
Sbjct: 1173 --KLLSEGKHALGEKTIADVCEALIGASLLSGGPENRFDMATKAVTALVDSPSHRVSCWK 1230

Query: 1237 DCITRASLRSYV---PRINE---IKDIESKIGYEFTVKFLLQEAITHASVQEFY-----C 1285
            + IT  ++  Y    PR +E    + +E ++GY FT   LL  AITH S+   +     C
Sbjct: 1231 EYITLYTMPKYQTEKPRGSEDDLARHVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPC 1290

Query: 1286 YQNL--------------------------------------------------YKHLQH 1295
            YQ L                                                  ++ +  
Sbjct: 1291 YQRLEFLGDSLLDMVCVEDLFRRFPDRDPQWLTEHKMAMVSNKFLGALSVKLGFHRRIMA 1350

Query: 1296 CSTLLLSQITEYVKSFPKPGETTDSGP------SMKAPKALGDLLESIVGAVLIDTKLNL 1349
             S  L +QIT YV+   +  +    G       +   PK L D++E+ +GA+ +D+K + 
Sbjct: 1351 FSNPLQAQITHYVEEI-ESAQAESRGAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDF 1409

Query: 1350 DEVWRIFKPILSPI 1363
              +   F+  + P 
Sbjct: 1410 QVIEVFFERQIKPF 1423


>gi|389633725|ref|XP_003714515.1| dicer-like protein 1 [Magnaporthe oryzae 70-15]
 gi|158706447|sp|A4RKC3.2|DCL1_MAGO7 RecName: Full=Dicer-like protein 1; Includes: RecName:
           Full=Endoribonuclease DCL1; Includes: RecName:
           Full=ATP-dependent helicase DCL1
 gi|351646848|gb|EHA54708.1| dicer-like protein 1 [Magnaporthe oryzae 70-15]
          Length = 1591

 Score =  260 bits (665), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 196/651 (30%), Positives = 327/651 (50%), Gaps = 69/651 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ----AIKSNGFKKLIIFLAP 101
           PR YQ+++FE AK++NTIAVL+TG GKT+IA++LI+ I +    A      K++  FL  
Sbjct: 108 PREYQIELFERAKQKNTIAVLDTGTGKTLIAILLIRHIIELELGARWQGREKRITFFLVD 167

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS-QCWQKEINKNDVLVMTPQILLDALR 160
            V LV QQ D IR + DF V   +G    + W S + ++K + + +V+V T +IL   L 
Sbjct: 168 KVALVRQQTDHIRANLDFPVTGLHGDTVRNLWYSKEYFEKLLQEQEVVVCTAEILYRCLH 227

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN---KPKVFGMTASPVVRKGVS 217
           +++L++  V  +V DE HHA  NH Y +I+K+FY   ++   +P++FGMTASP+  K   
Sbjct: 228 RSYLNISQVSLVVFDEAHHAKKNHVYARIIKDFYLMEEDCQKRPRIFGMTASPIDTK--D 285

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
           + +  E    ELES L S++ TI D+  ++V     +E  + Y                 
Sbjct: 286 TCISYERATHELESLLHSEIATISDRDLLKVIGSRPQEVRKSY----------------- 328

Query: 278 WSKFDASLSKLQGSQL-NCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC 336
                A + + + ++L N  +++   H   ++          + + ELG  CA +  ++C
Sbjct: 329 -----ARVLRQENTELCNQLRELVGNHPLFKQTFDSAE----FAVTELGAWCADKLWELC 379

Query: 337 LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS 396
             +   +  +  +   S  +    + E  H + +A    + + L   + +S   D G +S
Sbjct: 380 FREEAVSTLDGRV-EGSRARDPDEVGESSHEVSNA---REALSLVQQWSFSPPED-GSLS 434

Query: 397 TKLHELLQL----FLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH---LTVAYLT 449
           TK H+L+++    F        + CI+FV+R   A ++    ++    T    L  A+L 
Sbjct: 435 TKTHKLIEILAECFSQASAGNAIQCIVFVKRRDTAVLLNALCEQAEIRTKIPDLKGAFLI 494

Query: 450 GSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
           G+    +A   T + Q++ +  FR G++N LFAT + EEG+ +P C+ VIRFDL  T   
Sbjct: 495 GAGRGGNAAFTTTRQQEQTVSRFRDGEINCLFATSIAEEGLDIPGCNVVIRFDLHGTTIQ 554

Query: 508 YIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACT-- 565
           YIQSRGRAR  NS FI M E GN +   + F    +E+ + D  LS   +    KA    
Sbjct: 555 YIQSRGRARMRNSWFIHMTEFGNPEHNRRWFQDRVNEQKMRDFCLSLPKDRIMEKAEVDD 614

Query: 566 ----YVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPS--DKY----YTPKPIFKYKSAE 615
                   K ++V  + AS+T   S+ ++  +   LP+  D+     YT  P+F      
Sbjct: 615 VLRGDQSQKIFVVPGSKASLTFKQSLVVLAEFVATLPARPDEILSVDYTVVPVFG----- 669

Query: 616 EAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL 666
             ++ E+ LP+++P ++ +G   R+K L+K       C +L+    L+DHL
Sbjct: 670 -GFQGEVYLPASSPLRSAMGGVYRSKQLAKCAAAYAMCIQLYNSNYLDDHL 719



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 162/468 (34%), Gaps = 137/468 (29%)

Query: 995  GMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRN 1054
            G N+  PQ   ++  E L+   +P+  V   Y  P+++ RLE+ +++ +      C +  
Sbjct: 992  GENSTGPQT-CYLVLETLLISQIPVDTVVMAYTFPAIIYRLENSLISLEA-----CQNLG 1045

Query: 1055 FHIPSSLILEALT----------------TLGCCESFSMERLELLGDSVLKYAVSCHLFL 1098
              IP  + L A+T                  G  +++  ERLE LGD  LK A S  L+ 
Sbjct: 1046 LDIPIDIALIAMTKDSDNSDDHDEAPINFQSGMGQNY--ERLEFLGDCFLKMATSIALY- 1102

Query: 1099 TYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCE 1158
            T  +  E +    R   +CN  L     +  LQ +IR  +F+ R W  PG          
Sbjct: 1103 TLVEGDEFEYHVERMLDICNKNLLNWALESNLQEHIRSKSFNRRTWYPPG---------- 1152

Query: 1159 CGVDTLEVPLDGKFFTQDTKVVVGKPCDM-GHRWMGSKTIADCAEALIGAYYVGGG---- 1213
                               K++ GK  ++     +G K+IAD  EALIGA Y+       
Sbjct: 1153 ------------------LKLLKGKKTEVDDEHALGDKSIADVCEALIGAAYLTAQAQSS 1194

Query: 1214 -----LIAALYMM---KWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEF 1265
                  + A+ +M   K   + A  +      C    S      ++     I++K+GY F
Sbjct: 1195 PNFDLAVKAVTVMTHSKTHTMQAWSDYYASYQCPEWLSTPPSQTQLELCSQIKNKMGYRF 1254

Query: 1266 TVKFLLQEAITHASVQEFY----CYQNL-------------------------------- 1289
                LL+ A  H S    Y     YQ L                                
Sbjct: 1255 KNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLFKKHPDKDPQWLTEHK 1314

Query: 1290 ------------------YKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKA----- 1326
                              ++HL H    L   ITE+ +   K  E        +      
Sbjct: 1315 MAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQLAVRRGQREED 1374

Query: 1327 ------------PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSP 1362
                        PK L D+LE+ VGA+ +DT  +   V   F   + P
Sbjct: 1375 YARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKP 1422


>gi|387015528|gb|AFJ49883.1| Endoribonuclease Dicer-like isoform 1 [Crotalus adamanteus]
          Length = 1917

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 218/729 (29%), Positives = 351/729 (48%), Gaps = 95/729 (13%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK--LIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+LIK+++  I+ +  KK    +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLIKELSYQIREDFKKKGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +   V QQ   ++ H+D +V +Y   +  + W  + W +E  K  VLVMT Q+ L+ L+ 
Sbjct: 102 SASQVAQQVSTVKTHSDLKVGDYSSVEITEAWTKERWNQEFAKYQVLVMTCQMALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
             L+L  +  ++ DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 EHLALSNINLLIFDECHLAIQDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPAE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S   + E  T++ V      + C        CG  SD  G  E   +
Sbjct: 219 LEEKIQKLEKILKS---SAETATDLVVLDRYTSQPCEIVVD---CGPYSDKSGLYERLLT 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + D +LS L    +  +    D     ++ LSD  A +L    +C D++  +   E    
Sbjct: 273 ELDDALSFLNDCNITVHCRERDSILISKQILSDCRAVLLVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKTETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEIEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERG-------NLKQRNKLFDIIRSE--RSVTDTALSRDPEACFLKACTYVKTKSYIVES 576
            +         +LK    +  I+R++  +SV  +    +P    +             E 
Sbjct: 564 ADSDKIKCFEEDLKTYKAIEKILRNKCSKSVDISETENEP---IIDDDDIFPPYVLRPED 620

Query: 577 TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKS-AEEAYECELTLPSNAPFQ-TIV 634
            G  VT ++++  I+RYC  LPSD +    P  K +   +  +   L LP N+P + +IV
Sbjct: 621 GGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELLDNTFYATLYLPINSPLRASIV 680

Query: 635 GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-A 689
           GP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  
Sbjct: 681 GPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRP 740

Query: 690 GTTKRKELH 698
           G+TKR++ +
Sbjct: 741 GSTKRRQCY 749



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1295 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1354

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1150
            L++LG  + L   +  S FDP   W+ PG +
Sbjct: 1355 LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYI 1385



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 72/123 (58%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D++++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1800 PKAMGDIFESLAGAIYMDSEMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1859

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1860 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1911

Query: 1441 KRI 1443
             ++
Sbjct: 1912 PQV 1914



 Score = 45.1 bits (105), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQ 1073


>gi|398392319|ref|XP_003849619.1| dsRNA-specific nuclease [Zymoseptoria tritici IPO323]
 gi|339469496|gb|EGP84595.1| dsRNA-specific nuclease [Zymoseptoria tritici IPO323]
          Length = 1537

 Score =  260 bits (664), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 205/699 (29%), Positives = 342/699 (48%), Gaps = 67/699 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK---DIAQAIKSNGF-KKLIIFLAP 101
           PR YQ+++FE AK+ NTIAVL+TG+GKT+IAV+L++   D     ++ G   ++  FL  
Sbjct: 93  PREYQIELFERAKKENTIAVLDTGSGKTLIAVLLLRWMIDNELEDRAAGKPSRVSFFLVS 152

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V LV+QQ+ V+  + D +V    GA  VD ++   W+K   +N V+V T +IL   L +
Sbjct: 153 SVTLVYQQHSVLECNLDHKVARLCGADNVDRFNKSSWEKLFYENKVIVCTAEILFQCLSR 212

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK---PKVFGMTASPVVRKGVSS 218
           +++++  +  ++ DE HHA  NHP+ +I+K+FY    +    P+VFGMTASP+  K    
Sbjct: 213 SYITMKQINLLIFDEAHHAKQNHPFARIVKDFYLTEPDATSCPRVFGMTASPIDAK---- 268

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD--LKGKLEV 276
             D     SELE+ L  ++ T  D +  E  +   KE    YD     G++  L   L+ 
Sbjct: 269 -TDVVQAASELETLLGCRIATTSDMSLAES-IKKPKECVLQYDALPQTGAETLLLQSLKA 326

Query: 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC 336
            +   +   +K        ++   D  + L +  +D H      +D LG     + ++  
Sbjct: 327 RYGHVEV-FNK-------TFEQATDISRVLGRWCADSH-----LVDALG-SDKLKKLEAT 372

Query: 337 LEKVLKAQEECEI----YRQSSL--QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV 390
           +E+   A++  +      RQ+ L  Q K   + V +V   A   A+             V
Sbjct: 373 VERRFYARDRSQAADSEARQAELERQLKELRDAVAYVQEQATSTAN----------LATV 422

Query: 391 DLGYISTKLHELL-QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLT 449
               +S+K+  L   L   F + +   CI+FV++   A+++ R  +K+    HL   +L 
Sbjct: 423 TADDVSSKVWSLRGHLDAQFERPSNHRCIVFVDQRYTARLLTRLFQKIG-TKHLHSQFLI 481

Query: 450 G---STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
           G         + T + Q   L  FR G  N LFAT V EEG+ VP+C+ V+RFD+ KT+ 
Sbjct: 482 GHGSGNADEGSFTFRQQVWTLLKFRKGVFNCLFATSVAEEGLDVPDCNLVVRFDMYKTMI 541

Query: 507 SYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSV--------TDTALSRDPEA 558
            Y+QSRGRAR  NS FI MLE GN  Q N L ++   E+++         D  L  + + 
Sbjct: 542 QYVQSRGRARNINSTFIHMLEMGNSIQTNLLNEVRHQEKAMRDFCNLLPADRKLDGNQDG 601

Query: 559 CFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAY 618
                     T++Y V +TGA +T  ++++++  +   +PSD      P        + +
Sbjct: 602 LNELLEKEKNTRTYTVPATGAKLTYGNALSILAHFVSAVPSDSDEPQHPTCVISVTGQKF 661

Query: 619 ECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNL 678
             E+ LP N+P ++++G   + K L+K      AC +L +   L+ HL+P  ++     L
Sbjct: 662 LAEVLLPGNSPIRSVLGRPEQRKQLAKCSAAFNACLELRKKEYLDAHLMPIYQK----KL 717

Query: 679 ISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVI 717
            + +N +L   G  K K       ++     W E+ G++
Sbjct: 718 PAMRN-ALLATGMDKTKGF----AMQVKPKIWAEQRGIV 751



 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 140/370 (37%), Gaps = 70/370 (18%)

Query: 1009 PELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT- 1067
            PE L    +P  +  SL   P+V+ R+E+ +++ +        S       +  L A T 
Sbjct: 996  PEPLRISAIPPELATSLLFWPAVIHRIEAYLISIE-----GSASVGVACDPTFALAAFTK 1050

Query: 1068 ----------------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
                              G  E++  ERLE +GD+ LK A +   F+  P  +E +   R
Sbjct: 1051 DSDNQGEHEAQERVNFQRGMGENY--ERLEFIGDTFLKTATTISTFIQNPNDNEFEFHVR 1108

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGK 1171
            R   +CN  L +   + KL  YIR  AF+ R W                        +G 
Sbjct: 1109 RMQMLCNKNLFEHALEYKLYEYIRSMAFNRRTWYP----------------------EGM 1146

Query: 1172 FFTQDTKVVVGKPCDMGHRWM----GSKTIADCAEALIGAYYVGGG----------LIAA 1217
                 T V+ G+  +M H  M    G KTIAD  EALIGA ++                A
Sbjct: 1147 KLMAGTGVIKGQEKEMYHSEMTHVLGKKTIADVCEALIGAAFLTHNQPDEKWQPHHWEPA 1206

Query: 1218 LYMMKWLGIDADLEVSLVDDCITRASLRSY-VPRINEI-KDIESKI----GYEFTVKFLL 1271
            +  +  L    D  +  +DD      L  Y    +  + +D+  KI     Y F    LL
Sbjct: 1207 IQAVTKLVKSDDHTMLTMDDYKAAYLLPDYQTAHVTAVQRDLAEKIQLEHAYSFNYPRLL 1266

Query: 1272 QEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ--ITEYVKSFP--KPGETTDSGPSMKAP 1327
              A +H S    +     Y+ L+     LL Q  I+     FP   P   T+   +M + 
Sbjct: 1267 YSAFSHPSNPYMHAQVPNYQRLEFLGDALLDQASISYLFYKFPAADPQWLTEHKMAMVSN 1326

Query: 1328 KALGDLLESI 1337
            K LG L  +I
Sbjct: 1327 KFLGALCVNI 1336



 Score = 48.5 bits (114), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 1289 LYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMK--------APKALGDLLESIVGA 1340
             +KHL+H  + L  QI  YV    +    T SGP  +         PK L D++ES VGA
Sbjct: 1338 FHKHLRHSHSSLGKQIHAYVDELVEA--RTSSGPDCRDYWTTVSDPPKCLPDVIESFVGA 1395

Query: 1341 VLIDTKLNLDEVWRIFK 1357
            + ID+  N  EV R F+
Sbjct: 1396 MFIDSNFNFAEVQRFFE 1412


>gi|126290301|ref|XP_001367933.1| PREDICTED: endoribonuclease Dicer-like [Monodelphis domestica]
          Length = 1923

 Score =  259 bits (663), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 221/735 (30%), Positives = 354/735 (48%), Gaps = 107/735 (14%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ N  +  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGNFNRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VLVMT Q+ L+ L+ 
Sbjct: 102 SANQVAQQASAVRTHSDLKVGEYSSLEISASWTKEKWNQEFIKHQVLVMTCQVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 DYLSLSNINLLVFDECHLAILDHPYREIMK-ICEDCPSCPRILGLTAS--ILNGKCDPAE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPYTDTSGLYERLLK 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + D +L+ L    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELDEALNFLNDCNISVHSKEKDSILISKQILSDCRAVLVVLGPWCTDKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPMEYRSYVQSKGRARAPISNYIML 563

Query: 526 LE-------RGNLKQRNKLFDIIRSE--RSV----TDTALSRDPEACFLKACTYVKTKSY 572
            +         +LK    +  I+R++  +SV    T+T    D +  F           Y
Sbjct: 564 ADSDKIKSFEDDLKTYKAIEKILRNKCSKSVDTGETETEPIVDDDDIF---------PPY 614

Query: 573 IVESTGAS--VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAP 629
           ++     S  VT ++++  I+RYC  LPSD +    P  K +   +  +   L LP N+P
Sbjct: 615 VLRPDDGSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDGTFYSTLYLPINSP 674

Query: 630 FQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNE 684
            +  IVGP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  
Sbjct: 675 LRAAIVGPQMNCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEET 734

Query: 685 SLPG-AGTTKRKELH 698
           S+PG  G+TKR++ +
Sbjct: 735 SVPGRPGSTKRRQCY 749



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1299 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1358

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1150
            L++LG  + L   +  S FDP   W+ PG +
Sbjct: 1359 LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYI 1389



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1806 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1865

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1866 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1917

Query: 1441 KRI 1443
             ++
Sbjct: 1918 PQV 1920



 Score = 44.3 bits (103), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|449280710|gb|EMC87946.1| Endoribonuclease Dicer [Columba livia]
          Length = 1922

 Score =  259 bits (663), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 221/739 (29%), Positives = 355/739 (48%), Gaps = 115/739 (15%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  K  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   + ++ W  + W +E +K+ VLVMT  + L  LR 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSSLEVIESWTKEKWSQEFSKHQVLVMTCHVALTVLRN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMK--EFYHKSDNKPKVFGMTASPVVRKGVSSA 219
            +LSL  +  +V DECH A  +H Y +IMK  E Y      P++ G+TAS  +  G    
Sbjct: 162 EYLSLSNINLLVFDECHLAIQDHAYREIMKICEGYPSC---PRILGLTAS--ILNGKCDP 216

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE---SCRFY-DQSKFCGSDLKGKLE 275
            + E +I +LE  L S   T  D   ++ +     E    C  Y D+S   G  LK    
Sbjct: 217 AELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLK---- 272

Query: 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYE 331
               + D +L+ L    ++ +    D     ++ LSD  A ++    +C D++  +   E
Sbjct: 273 ----ELDEALTFLNDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE 328

Query: 332 AVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVD 391
                L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + 
Sbjct: 329 -----LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIK 379

Query: 392 LGYISTKL--HELLQL-------------FLSFGKS-----------------------T 413
           L  I  K   +E  Q              ++S+  S                       T
Sbjct: 380 LLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFT 439

Query: 414 QVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV------ 462
            +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K       
Sbjct: 440 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFR 499

Query: 463 -QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S 
Sbjct: 500 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISN 559

Query: 522 FILMLERG-------NLKQRNKLFDIIRS------ERSVTDTALSRDPEACFLKACTYVK 568
           +I++ +         +LK    +  I+R+      + S T+T    D +  F        
Sbjct: 560 YIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDDDDVF-------- 611

Query: 569 TKSYIV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKS-AEEAYECELTLP 625
              Y++  +     VT ++++  I+RYC  LPSD +    P  K +   +  +   L LP
Sbjct: 612 -PPYVLRPDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLP 670

Query: 626 SNAPFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLIS 680
            N+P + +IVGP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  
Sbjct: 671 INSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHD 730

Query: 681 KKNESLPG-AGTTKRKELH 698
           ++  S+PG  G+TKR++ +
Sbjct: 731 EEETSVPGRPGSTKRRQCY 749



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1298 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1357

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1150
            L++LG  + L   +  S FDP   W+ PG +
Sbjct: 1358 LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYI 1388



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1805 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1864

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1865 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1916

Query: 1441 KRI 1443
             ++
Sbjct: 1917 PQV 1919



 Score = 44.3 bits (103), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|395504573|ref|XP_003756622.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer [Sarcophilus
           harrisii]
          Length = 1924

 Score =  259 bits (663), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 223/737 (30%), Positives = 356/737 (48%), Gaps = 111/737 (15%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ N  +  K  +FL  
Sbjct: 43  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGNFNRNGKRTVFLVN 102

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VLVMT Q+ L+ L+ 
Sbjct: 103 SANQVAQQASAVRTHSDLKVGEYSSLEISASWTKEKWNQEFIKHQVLVMTCQVALNVLKN 162

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMK--EFYHKSDNKPKVFGMTASPVVRKGVSSA 219
            +LSL  +  +V DECH A  +HPY +IMK  E Y      P++ G+TAS  +  G    
Sbjct: 163 DYLSLSNINLLVFDECHLAILDHPYREIMKICEDYPSC---PRILGLTAS--ILNGKCDP 217

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVS 277
            + E +I +LE  L S     E  T++ V      + C        CG  +D  G  E  
Sbjct: 218 AELEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPYTDTSGLYERL 271

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAV 333
             + D +L+ L    ++ +    D     ++ LSD  A ++    +C D++  +   E  
Sbjct: 272 LKELDEALNFLNDCNISVHSKEKDSILISKQILSDCRAVLVVLGPWCTDKVAGMMVRE-- 329

Query: 334 KICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393
              L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L 
Sbjct: 330 ---LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLL 382

Query: 394 YISTKL--HELLQL-------------FLSFGKS-----------------------TQV 415
            I  K   +E  Q              ++S+  S                       T +
Sbjct: 383 EILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNI 442

Query: 416 LC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------Q 463
           LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q
Sbjct: 443 LCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQ 502

Query: 464 KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
           +EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I
Sbjct: 503 EEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYI 562

Query: 524 LMLERG-------NLKQRNKLFDIIRSE--RSV----TDTALSRDPEACFLKACTYVKTK 570
           ++ +         +LK    +  I+R++  +SV    T+T    D +  F          
Sbjct: 563 MLADSDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETETEPIVDDDDIF---------P 613

Query: 571 SYIVESTGAS--VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKS-AEEAYECELTLPSN 627
            Y++     S  VT ++++  I+RYC  LPSD +    P  K +  ++  +   L LP N
Sbjct: 614 PYVLRPDDGSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELSDGTFYSTLYLPIN 673

Query: 628 APFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKK 682
           +P +  IVGP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++
Sbjct: 674 SPLRAAIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEE 733

Query: 683 NESLPG-AGTTKRKELH 698
             S+PG  G+TKR++ +
Sbjct: 734 ETSVPGRPGSTKRRQCY 750



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1300 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1359

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1150
            L++LG  + L   +  S FDP   W+ PG +
Sbjct: 1360 LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYI 1390



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1807 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1866

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1867 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1918

Query: 1441 KRI 1443
             ++
Sbjct: 1919 PQV 1921



 Score = 43.9 bits (102), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 956  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1015

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1016 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1074


>gi|158706454|sp|Q0CW42.2|DCL1_ASPTN RecName: Full=Dicer-like protein 1; Includes: RecName:
           Full=Endoribonuclease dcl1; Includes: RecName:
           Full=ATP-dependent helicase dcl1
          Length = 1519

 Score =  259 bits (662), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 231/822 (28%), Positives = 377/822 (45%), Gaps = 91/822 (11%)

Query: 15  VHSPNPPDMGSS--GHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGK 72
           V+SP  P+   S       +   +S T  +N  PR YQ+++FE AK +NTIAVL+TG+GK
Sbjct: 78  VNSPVKPNQAQSELSISSLIGRNASGTGILN--PREYQIELFERAKVQNTIAVLDTGSGK 135

Query: 73  TMIAVMLIKDIAQA---IKSNGFK-KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAK 128
           T+IAV+L+K + Q     ++NG   ++  FL  +V LV+QQ  V+R + D  V  ++GA 
Sbjct: 136 TLIAVLLLKHVIQTELIDRANGNPPRISFFLVDSVTLVYQQASVLRNNLDQNVAHFFGAM 195

Query: 129 GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTK 188
           GVD W+ Q W +   KN V+V T +IL   L  A++++  +  +V DE HH   +HPY +
Sbjct: 196 GVDLWNKQTWAEHFEKNMVIVCTAEILNQCLLNAYITMQQINLLVFDEAHHTKKDHPYAR 255

Query: 189 IMKEFYHK--SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEM 246
           I+++ Y +    ++P++FGMTASPV  KG     D       LE+ LDS++ T    T +
Sbjct: 256 IIRDSYLRVPPSSRPRIFGMTASPVDTKG-----DVLEAARNLEALLDSKIATTSKLTIL 310

Query: 247 EVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTL 306
              V    E    YD           KL+ +   F + L KL  S+      ++   +  
Sbjct: 311 RQVVNRPNEEVWIYD-----------KLQPT---FTSDLYKLMESRFGDISHLEPMFRFA 356

Query: 307 RKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI--YRQSSLQCKYFLEEV 364
           R   S           ELG  CA       L   +  + E  I   RQS+   +  L + 
Sbjct: 357 RHATS-----------ELGTWCADRVWVSALADDVLPKVEGSIGGKRQSTGLGQ--LPKD 403

Query: 365 LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELL-QLFLSFGKSTQVLCIIFVER 423
           +H   + +  A ++      +   A +   +S+K+  L  ++   FG+ T   CI+F E+
Sbjct: 404 VHRDITRIKEASELVESHPPNDPGAPEA--LSSKVRVLWKEISQCFGQETNTKCIVFTEK 461

Query: 424 IIAAKVVERF--VKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFAT 481
              AKV+     V  VP L    +  +  S      +T + Q   +  FR G++N LFAT
Sbjct: 462 RYTAKVLFDLFTVLNVPGLRPGVLIGVRSSDRIGMNVTFRQQILTMVRFRTGEINCLFAT 521

Query: 482 DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDII 541
            V EEG+ +P+C+ V+RFDL KT+  Y+QSRGRAR  +S +  M+E+ N    + L  + 
Sbjct: 522 AVAEEGLDIPDCNLVVRFDLYKTLIQYVQSRGRARHADSTYASMIEKDNADHESILVQVN 581

Query: 542 RSERSV-------------------TDTALSRDPEACFLKACTYVKTKSYIVESTGASVT 582
            +E+ +                   TD  L R+              + Y + ST A +T
Sbjct: 582 DAEKIMQSFCQLLPEDRILHGNDDDTDAVLDREEWE-----------EPYTLPSTAARLT 630

Query: 583 TDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKN 642
             S++ ++ RY   L  +   + +  +      +AY CE+ LP  +P +   G  +  K+
Sbjct: 631 HHSAITVLARYASSLQYENDTSAQVTYVVLPVNDAYVCEVILPEKSPIRGATGMPAMKKS 690

Query: 643 LSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTP 702
            +K+    EAC  L +   L+++L           L + +N  L  A T+ R   +   P
Sbjct: 691 TAKRYAAFEACRLLRKHRLLDEYL----NSVYHRRLPAMRNARL--AITSHRTNEYKILP 744

Query: 703 IRALSGRWGEKCGVI---LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV 759
             +L   W ++ GVI   L+    +           G ++L   +       F + L   
Sbjct: 745 KSSL---WNKQIGVIPGKLYGTVISLKPLTPLAREHGSMILFTRDRLPQFPTFPIFLGED 801

Query: 760 SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVK 801
            +T+  TV  + ++   AD++     F    F  +F K + K
Sbjct: 802 VETIVLTVPVNMELQPSADELDYMTTFTLRIFRDVFRKTYDK 843



 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 151/428 (35%), Gaps = 130/428 (30%)

Query: 1028 LPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT----------------TLGC 1071
             P+++ RL++ ++  +      C      I     LEALT                  G 
Sbjct: 1013 FPAIISRLDAYLIGLEA-----CKKLGLEISLEYALEALTKDSDNTHEHRSQQVHMQRGM 1067

Query: 1072 CESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQ 1131
             +++  ERLE LGD  LK A S  LF  +P  +E      R   +CN  L      ++L 
Sbjct: 1068 GKNY--ERLEFLGDCFLKMATSISLFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELY 1125

Query: 1132 GYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRW 1191
             +IR   F    W   G L+L               L G+    D    +G         
Sbjct: 1126 QFIRSRGFSRDTWYPEG-LTL---------------LQGR----DHSKKIGSESKHA--- 1162

Query: 1192 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITR--ASLRSYV- 1248
            +  KTIAD  EALIGA  +  G      M    G+ A   VS V D      AS R Y+ 
Sbjct: 1163 LAEKTIADVCEALIGAALLTPGPQHRFDM----GVRA---VSAVVDSNEHNAASWRDYIS 1215

Query: 1249 -----------PRINEI---KDIESKIGYEFTVKFLLQEAITHASVQEFY----CYQN-- 1288
                       P  +EI   + +E K+GY F    LL  A TH S    +    CYQ+  
Sbjct: 1216 LYSIPKYQEQAPDGSEIDLCRRVEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLE 1275

Query: 1289 ------------------------------------------------LYKHLQHCSTLL 1300
                                                            L+ HL + S+ L
Sbjct: 1276 FLGDALLDMVCVEDLFRRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLSYFSSAL 1335

Query: 1301 LSQITEYVKSFPKPGETTDSGP-----SMKAPKA-LGDLLESIVGAVLIDTKLNLDEVWR 1354
             SQIT Y +        +D        +   PK  L D++E+ +GAV +D+    +EV  
Sbjct: 1336 QSQITHYAEEAQAAASQSDVAVDYWTLTQDPPKVCLPDMVEAYLGAVFVDSNFRFEEVEV 1395

Query: 1355 IFKPILSP 1362
             F+  + P
Sbjct: 1396 FFQQHIKP 1403


>gi|22830885|dbj|BAC15765.1| double-strand-specific ribonuclease MDCR [Mus musculus]
          Length = 1906

 Score =  259 bits (662), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 212/739 (28%), Positives = 353/739 (47%), Gaps = 115/739 (15%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K++A  I+   N   K  +FL  
Sbjct: 32  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVN 91

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L  L+ 
Sbjct: 92  SANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKN 151

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 152 GYLSLPDINLLVFDECHLAILDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPEE 208

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 209 LEEKIQKLERILRSDA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 262

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + +A+L  +    +  +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 263 ELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 318

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    F + +L  I +   L ++ F         ++DL Y+
Sbjct: 319 -LQKYIKHEQE-ELHRKFLL----FTDTLLRKIHA---LCEEYF------SPASLDLKYV 363

Query: 396 STKLHELLQLFLSF---------------------------------------------- 409
           + K+ +LL++   +                                              
Sbjct: 364 TPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETN 423

Query: 410 --GKSTQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV 462
                T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K 
Sbjct: 424 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQ 483

Query: 463 -------QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
                  Q+EVL  FR  + NLL AT V+EEG+ +P C+ V+RFDLP    SY+QS+GRA
Sbjct: 484 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 543

Query: 516 RQHNSQFILMLE-------RGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVK 568
           R   S ++++ +         +LK    +  I+R++ S +      D  A      T+  
Sbjct: 544 RAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDDEDTF-- 601

Query: 569 TKSYIV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLP 625
              Y++  +  G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP
Sbjct: 602 -PPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLP 660

Query: 626 SNAPFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLIS 680
            N+P + +IVGP   +  L++++V L  CEKLH++G L++HL+P    +V+   E +L  
Sbjct: 661 INSPLRASIVGPPMDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHD 720

Query: 681 KKNESLPG-AGTTKRKELH 698
           ++  S+PG  G+TKR++ +
Sbjct: 721 EEETSVPGRPGSTKRRQCY 739



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 3/124 (2%)

Query: 1028 LPSVMQRLESL--MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGD 1085
            +P++M  +++L   + S+    +   SR       LIL+ALT     + F++ERLE+LGD
Sbjct: 1251 MPAMMNAVKALKDRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1310

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RW 1144
            S LK+A++ +LF TYP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W
Sbjct: 1311 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1370

Query: 1145 VAPG 1148
            + PG
Sbjct: 1371 LPPG 1374



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1789 PKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPET 1848

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1849 AEFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1900

Query: 1441 KRI 1443
             ++
Sbjct: 1901 PQV 1903



 Score = 44.3 bits (103), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 945  TPLSKFPSPECETFAEYYKTKYNLDLTNLNQPLLDVDHASSRLNLLTPRHLNQKGKALPL 1004

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1005 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1063


>gi|414879097|tpg|DAA56228.1| TPA: hypothetical protein ZEAMMB73_255524 [Zea mays]
          Length = 290

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 136/289 (47%), Positives = 189/289 (65%), Gaps = 17/289 (5%)

Query: 148 LVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMT 207
           +VMTPQ+LLDALR+AFL LD+V  ++ DECHHATGNHPYT+IMKEFYH S++KP VFGMT
Sbjct: 1   MVMTPQVLLDALRQAFLILDMVSLMIFDECHHATGNHPYTRIMKEFYHGSEHKPNVFGMT 60

Query: 208 ASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG 267
           ASP++RKGVSS +DC+ Q+SELE+ LDS++ ++ D+ E+E+ VPSAKE  R+Y+      
Sbjct: 61  ASPIIRKGVSSDLDCKNQLSELENILDSKIHSVVDREEIELCVPSAKEVNRYYEPRTVSF 120

Query: 268 SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLI 327
            DL  +LE+  SK+D  + +L     N YKD D+  K  RK+LS+  AKI YCL++ GL+
Sbjct: 121 DDLSEELEILCSKYDGLIIQLHNRSTNQYKDADEITKESRKRLSNSLAKICYCLEDAGLL 180

Query: 328 CAYEAVKICLEKVLK---------------AQEECEIYRQSSLQCKYFLEEVLHVIGSAL 372
           CA EA KIC+E+  +                Q    ++ + S+    F +EVL +IG  +
Sbjct: 181 CASEATKICIERGQRKGWLKGGSDTTDQQSGQNGPILFAEISMLHMEFFQEVLDIIGKRV 240

Query: 373 PLADKI--FLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCII 419
                I   L+      +A ++GYIS KL+EL+Q+FLSF     V C+I
Sbjct: 241 QQQQGIDALLNSERGCVEAKNMGYISPKLYELMQVFLSFSDPDNVRCLI 289


>gi|20385913|gb|AAM21495.1|AF430845_1 dicer-like protein [Mus musculus]
          Length = 1917

 Score =  259 bits (661), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 208/736 (28%), Positives = 349/736 (47%), Gaps = 109/736 (14%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K++A  I+   N   K  +FL  
Sbjct: 43  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVN 102

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L  L+ 
Sbjct: 103 SANQVCQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKN 162

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 163 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPEE 219

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 220 LEEKIQKLERILRSDA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 273

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + +A+L  +    +  Y    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 274 ELEAALDFINDCNVAVYSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 329

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    F + +L  I +   L ++ F         ++DL Y+
Sbjct: 330 -LQKYIKHEQE-ELHRKFLL----FTDTLLRKIHA---LCEEYF------SPASLDLKYV 374

Query: 396 STKLHELLQLFLSF---------------------------------------------- 409
           + K+ +LL++   +                                              
Sbjct: 375 TPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETN 434

Query: 410 --GKSTQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV 462
                T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K 
Sbjct: 435 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQ 494

Query: 463 -------QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
                  Q+EVL  FR  + NLL AT V+EEG+ +P C+ V+RFDLP    SY+QS+GRA
Sbjct: 495 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 554

Query: 516 RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS---- 571
           R   S ++++ +   +K   +     ++   +     S+  +         V  +     
Sbjct: 555 RAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDDEDAFPP 614

Query: 572 YIV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNA 628
           Y++  +  G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+
Sbjct: 615 YVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINS 674

Query: 629 PFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKN 683
           P + +IVGP   +  L++++V L  CEKLH++G L++HL+P    +V+   E +L  ++ 
Sbjct: 675 PLRASIVGPPMDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEE 734

Query: 684 ESLPG-AGTTKRKELH 698
            S+PG  G+TKR++ +
Sbjct: 735 TSVPGRPGSTKRRQCY 750



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 3/124 (2%)

Query: 1028 LPSVMQRLESL--MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGD 1085
            +P++M  +++L   + S+    +   SR       LIL+ALT     + F++ERLE+LGD
Sbjct: 1262 MPAMMNAVKALKDRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1321

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RW 1144
            S LK+A++ +LF TYP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W
Sbjct: 1322 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1381

Query: 1145 VAPG 1148
            + PG
Sbjct: 1382 LPPG 1385



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1800 PKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPET 1859

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1860 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1911

Query: 1441 KRI 1443
             ++
Sbjct: 1912 PQV 1914



 Score = 44.3 bits (103), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 956  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1015

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1016 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1074


>gi|149636857|ref|XP_001510982.1| PREDICTED: endoribonuclease Dicer-like [Ornithorhynchus anatinus]
          Length = 1921

 Score =  258 bits (660), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 219/744 (29%), Positives = 353/744 (47%), Gaps = 125/744 (16%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+   N   K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDLNKNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  ++ VLVMT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSSLEISASWTKEKWNQEFTQHQVLVMTCHVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMK--EFYHKSDNKPKVFGMTASPVVRKGVSSA 219
            +LSL  +  +V DECH A  +HPY +IMK  E Y      P++ G+TAS  +  G    
Sbjct: 162 DYLSLSDINLLVFDECHLAILDHPYREIMKICENYPSC---PRILGLTAS--ILNGKCDP 216

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVS 277
            + E +I +LE  L S   + E  T++ V    + + C        CG  +D  G  E+ 
Sbjct: 217 AELEEKIQKLEKILKS---SAETATDLVVLDRYSSQPCEIVVD---CGPYADKSGLYEIL 270

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAV 333
             + D +L+ L    +       D     ++ LSD  A ++    +C D++  +   E  
Sbjct: 271 LKELDEALNFLNDCNITVLSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE-- 328

Query: 334 KICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393
              L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K +   
Sbjct: 329 ---LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVI--- 378

Query: 394 YISTKLHELLQLFLSFGKS----------------------------------------- 412
               KL E+L+ +  F +                                          
Sbjct: 379 ----KLLEILRKYKPFERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNF 434

Query: 413 ----TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV- 462
               T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K  
Sbjct: 435 PSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQM 494

Query: 463 ------QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516
                 Q+EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR
Sbjct: 495 EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRAR 554

Query: 517 QHNSQFILMLERG-------NLKQRNKLFDIIRSE--RSV----TDTALSRDPEACFLKA 563
              S +I++ +         +LK    +  I+R++  +SV    T+T    D +  F   
Sbjct: 555 APISNYIMLADSDKIVTFEEDLKTYKAIEKILRNKCSKSVDPGETETEPVVDDDDIF--- 611

Query: 564 CTYVKTKSYIVESTGAS--VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKS-AEEAYEC 620
                   Y++     S  VT ++++  I+RYC  LPSD +    P  K +   +  +  
Sbjct: 612 ------PPYVLRPDDGSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDSTFYS 665

Query: 621 ELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSE 675
            L LP N+P + +IVGP      L++++V L  CEKLH++G L+DHL+P    +V+   E
Sbjct: 666 TLYLPINSPLRASIVGPPMSCTRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEE 725

Query: 676 NNLISKKNESLPG-AGTTKRKELH 698
            +L  ++  S+PG  G+TKR++ +
Sbjct: 726 LDLHDEEETSVPGRPGSTKRRQCY 749



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1297 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1356

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1150
            L++LG  + L   +  S FDP   W+ PG +
Sbjct: 1357 LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYI 1387



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1804 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1863

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1864 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1915

Query: 1441 KRI 1443
             ++
Sbjct: 1916 PQV 1918



 Score = 43.9 bits (102), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|344274190|ref|XP_003408901.1| PREDICTED: endoribonuclease Dicer [Loxodonta africana]
          Length = 1920

 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 217/731 (29%), Positives = 353/731 (48%), Gaps = 99/731 (13%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS----NGFKKLIIFL 99
           + PR YQ+++ E A  RNTI  L TG+GKT IAV+L K+++  I+     NG  K  +FL
Sbjct: 42  YTPRKYQVELLEAALDRNTIVCLNTGSGKTFIAVLLTKELSYQIRGEFSRNG--KRTVFL 99

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
             + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VLVMT  + L+ L
Sbjct: 100 VNSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKEKWNQEFMKHQVLVMTCYVALNVL 159

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSA 219
           +  +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G    
Sbjct: 160 KNGYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDP 216

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVS 277
            + E +I +LE  L S     E  T++ V      + C        CG  +D  G  E  
Sbjct: 217 EELEEKIQKLEKILQSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERL 270

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAV 333
             + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E  
Sbjct: 271 LMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE-- 328

Query: 334 KICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393
              L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L 
Sbjct: 329 ---LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLL 381

Query: 394 YISTKL--HELLQL-------------FLSFGKS-----------------------TQV 415
            I  K   +E  Q              ++S+  S                       T +
Sbjct: 382 EILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNI 441

Query: 416 LC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------Q 463
           LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q
Sbjct: 442 LCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQ 501

Query: 464 KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
           +EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I
Sbjct: 502 EEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYI 561

Query: 524 LMLERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIV-- 574
           ++ +         +LK    +  I+R++ S +  A   D E        +     Y++  
Sbjct: 562 MLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADAGETDLEPVVDDDDVF---PPYVLRP 618

Query: 575 ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-T 632
           +  G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +
Sbjct: 619 DDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRAS 678

Query: 633 IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG 688
           IVGP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG
Sbjct: 679 IVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPG 738

Query: 689 -AGTTKRKELH 698
             G+TKR++ +
Sbjct: 739 RPGSTKRRQCY 749



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  
Sbjct: 1283 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYM 1342

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1343 RSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1380



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1803 PKAMGDIFESLAGAIYMDSGMSLELVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1862

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1863 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1914

Query: 1441 KRI 1443
             ++
Sbjct: 1915 PQV 1917



 Score = 44.3 bits (103), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|170049284|ref|XP_001855187.1| endoribonuclease Dicer [Culex quinquefasciatus]
 gi|167871117|gb|EDS34500.1| endoribonuclease Dicer [Culex quinquefasciatus]
          Length = 1665

 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 280/1077 (25%), Positives = 470/1077 (43%), Gaps = 150/1077 (13%)

Query: 39   TNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK-----SNGFK 93
            T   +F+PR YQ ++ +V   +NTI  L TGAGKT IA+M I+++ +        S G K
Sbjct: 7    TQKEDFVPRFYQSQMKDVCIAKNTIVYLPTGAGKTHIALMAIRELGRRGHLEKPLSQGGK 66

Query: 94   KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
            +   F+  TV L  QQ ++I  +  F+   Y   + VD W    W +E  K  ++V T Q
Sbjct: 67   R-TFFIVNTVALAKQQAEMIGRNVVFKTSVYTSDRDVDTWKQDRWLEEFAKYQIIVCTCQ 125

Query: 154  ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVV 212
            ILLD L+  +L++  +  +V DECHH  G+HP   IM+++   + +++P+V G++   ++
Sbjct: 126  ILLDVLKHGYLAMSHINLLVFDECHHGVGDHPMHGIMEQYLRARKEDRPRVIGLSGM-LL 184

Query: 213  RKGVSSAMDCEGQISELESTLDSQVFTI---EDKTEMEVFVPSAKESCRFYD--QSKFCG 267
             K +        ++  LE+T DS + T+   +  TE+  F    KE    +   QS    
Sbjct: 185  YKELKMKEQVAQELERLENTFDSTIATVGSYDAYTEVCRFSTDPKEGLLSFHVVQSSDVM 244

Query: 268  SDLKGKLEVSWSK---FDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDEL 324
             +L+G++    +K   FD  L KL     +  +DM    K + K    Y  ++ Y  ++L
Sbjct: 245  RNLQGQINDFINKVALFD--LPKLLNQNKSLMRDMPKPKKVITK----YFKELNYQFEDL 298

Query: 325  GLICAYEAV--KICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
            GL     A+   I   ++ K + +  + R     C  F E + H + + +          
Sbjct: 299  GLFGGAIALLGLIVQFELDKRESDHTMLRLLYRSCITFCENLRHQLENVMQ--------- 349

Query: 383  GFDYSKAVDLGYISTKLHEL---LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK---- 435
            G +  K + L + S K  +L   L+ F   G+S +   +IFV+R  +AKVV   +K    
Sbjct: 350  GLEIKKKLTL-FSSIKARQLIAQLEGFYKEGRSRKTKTLIFVQRRFSAKVVYHLLKIYFS 408

Query: 436  KVPFLTHLTVAYLTGSTTSV-----DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
            +      +   ++ G   ++       L+ K  + VLE F+  + N++  T+V+EEG+ +
Sbjct: 409  ETENAETILPDFMVGCNGTMPESIEQILSAKKDRRVLERFKKNETNVIVTTNVLEEGIDL 468

Query: 491  PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE---RGNLKQRNKLFDIIRSE--R 545
              C+ VI+FD P+T +SY QS+GRAR  +S + +ML+   R    ++  L+  I  E  R
Sbjct: 469  QMCNSVIKFDYPETFASYEQSKGRARMKDSTYTVMLDSDKREKFLKKYLLYKEIEEELRR 528

Query: 546  SVTDTALSR-DP-EACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYY 603
            ++    ++R +P EA   K  T      +  +  GA +   SS+ L++RYC  +P D + 
Sbjct: 529  ALVGKTINRPEPLEADVTKELTNELIPPFYTKK-GAKLDALSSIQLLNRYCMGMPRDAFT 587

Query: 604  TPKPIFKYKSAEEAYECELTLPSNAPFQTIV-----GPTSRNKNLSKQLVCLEACEKLHQ 658
                   ++  ++ Y  ++ +    P Q+ V     G    N  L+K+    EAC KL++
Sbjct: 588  NTN--VTWERHDDKYTGKIVVAVLLPLQSTVRDKVFGQPMTNVKLAKRSAAFEACRKLYE 645

Query: 659  VGALNDHLLP--------SVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSG-- 708
             G LNDHL+P        +V E    +    + ES   AGT K    H        SG  
Sbjct: 646  AGELNDHLIPIDSKRQLANVSEVYFRHWKQFEEESAKQAGTQKNVRNHQIRYPSQTSGCC 705

Query: 709  -RWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVG-------------NFEL 754
             + G+ C + +      F   +  E    F  L  SE  N+ G              F +
Sbjct: 706  PQPGKPCYIYVLRIAAGFNSDVQNENIETFHTLYSSE--NNFGIMTTKPLPVLARMKFFV 763

Query: 755  ELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKR 814
             L L++  +  T         DAD ++  K FQ + F  +  +L+        +EF +  
Sbjct: 764  SLGLINVHLDPTPIRVENAGSDAD-LAALKQFQLMLFRDVL-RLW--------KEFLVLD 813

Query: 815  ETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNG 874
             +N   S    +L++PL         S +I+W          + +K+  FL         
Sbjct: 814  SSNEANS----FLVVPLA-------QSRQIDW----------QVVKDFPFLA-------- 844

Query: 875  GNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTG---RIYSIVEIVNNSS 931
                  + S   T    + V        DAK  +  V+L  +     R Y +  +  + +
Sbjct: 845  ------QPSELSTVARSRMVF-------DAKQYRHRVILPWYRTDRERAYVVTAVHEHLT 891

Query: 932  AESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKG 991
              SPF    ++  +T+ +YF   YG  + +  Q L+ +K      N L       G    
Sbjct: 892  PGSPF---PNEKYQTYEDYFGTVYGQQICNKKQFLIEVKGITTWLNRL-----SPGDEDD 943

Query: 992  SKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
             KS    K    H  + PEL      P        LLPS + R+  L+LA  +R E+
Sbjct: 944  GKSATRAKNWTFHEILIPELCHNFAFPADYWLKATLLPSALHRINFLLLAENIRVEL 1000



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 132/321 (41%), Gaps = 54/321 (16%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            I++ALTT    + + +ER ELLGD+ LK++VS  L   + + HEG L+A +   V N  L
Sbjct: 1184 IIKALTTKSAHDVYDLERYELLGDAFLKFSVSLFLVKKHKEWHEGHLTAVKGQLVSNRNL 1243

Query: 1122 HKLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPC----------------------- 1157
                    L G ++   FDP+  W  P    L  VP                        
Sbjct: 1244 LYCAMLINLPGMMKIHTFDPKNDWSPP----LASVPHAVKQKMASINHSARVLYKLKMSE 1299

Query: 1158 -ECGVDTLEVPLDGKFFTQ---DTKVVVGKPCD--MGHRWMGSKTIADCAEALIGAYYVG 1211
             E    T+E      F  +    ++ +   P    +  + MG K  AD  EA++G     
Sbjct: 1300 EEIQAGTIEKDKYEDFIAELDVQSRSLDTSPMQNYLSQQAMGDKMPADSMEAMLGVCVST 1359

Query: 1212 GGLIAALYMMKWLGIDADLE--VSLVDDCITRASLRSYVPRINEIKD-------IESKIG 1262
             G+  +  ++ +LGI    E   +L+DD I    L++ V + NE+         IE  + 
Sbjct: 1360 VGIKRSFRLLSFLGILPKKENLTTLLDDRIANQRLKADVTK-NEVDSFLISPGRIERILD 1418

Query: 1263 YEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGP 1322
            Y F  +  L +A+THAS    Y    +    Q      L  + + V  F       +  P
Sbjct: 1419 YTFKDRTYLLQALTHAS----YPTNRITGSYQQ-----LEFVGDAVLDFLISAYIYEQNP 1469

Query: 1323 SMKAPKALGDLLESIVGAVLI 1343
            +M +P  L DL  ++V  + +
Sbjct: 1470 TM-SPGQLTDLRSALVNNITL 1489



 Score = 45.1 bits (105), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 1279 SVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPS--MKAPKALGDLLES 1336
            +V +F  +Q  +KH          +IT+ V    +  E      +  +  PKALGD+ ES
Sbjct: 1512 TVSKFVAFQEAHKH----------EITDQVNLLSEESERCQGAMAEFVDVPKALGDVFES 1561

Query: 1337 IVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP 1372
            ++GAV +D+  +L+  WR+   ++   +    +E P
Sbjct: 1562 LIGAVFLDSGNDLEVTWRVIYGLMHHEIATFSVETP 1597


>gi|317150438|ref|XP_001824024.2| dicer-like protein 1 [Aspergillus oryzae RIB40]
 gi|158706453|sp|Q2U6C4.2|DCL1_ASPOR RecName: Full=Dicer-like protein 1; Includes: RecName:
           Full=Endoribonuclease dcl1; Includes: RecName:
           Full=ATP-dependent helicase dcl1
          Length = 1523

 Score =  258 bits (659), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 216/784 (27%), Positives = 365/784 (46%), Gaps = 78/784 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFK-KLIIFLAP 101
           PR YQ+++FE AK +NTIAVL+TG+GKT+IAV+L+K I Q     ++NG   ++  FL  
Sbjct: 116 PREYQVELFERAKSQNTIAVLDTGSGKTLIAVLLLKHIIQNELIDRANGKPPRISFFLVD 175

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V L  QQ  V+R + D  V +++GA G D W  Q W  +   N V+V T +IL   L  
Sbjct: 176 SVTLAFQQAAVLRNNLDQNVAQFFGAMGTDLWSKQTWDHQFENNMVIVCTAEILNQCLLN 235

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSA 219
           +++ +D +  ++ DE HH   +HPY +I++E Y K+D   +P++FGMTASP+  KG    
Sbjct: 236 SYIRMDQINLLIFDEAHHTKKDHPYARIIRESYLKADPTKRPRIFGMTASPIDTKG---- 291

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
            D     ++LE  LDS++ T      +   V    E    YD           KL+  ++
Sbjct: 292 -DIIESATKLEVLLDSKIATTSKPNLLREVVRRPIEESWEYD-----------KLDPPFA 339

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339
                 +KL       + D+       R  L            ELG  CA  A    L  
Sbjct: 340 ------TKLYQILQARFGDISSLQPVFRFTLQ--------ASSELGPCCADRAWAYALAD 385

Query: 340 VLKAQEECEIYRQSSL------QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393
            +  + E  + + +        QC   L+E+     S +  A  I  +  F+       G
Sbjct: 386 DVLPKLEGNVRKLAQSISSPIPQCA--LKEI-----SRIQEASDIVKNHSFNSPNVP--G 436

Query: 394 YISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVK--KVPFLT-HLTVAYLT 449
            +S K+  L Q L   F   T+  CI+F ++   AK++       ++P+L   + +   +
Sbjct: 437 ELSPKVQLLRQKLIKYFEHPTKTKCIVFTQKRYTAKMLFDLFSTLEIPYLRPGVLIGVRS 496

Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
           G    ++ ++ + Q   L  FR G++N LFAT V EEG+ +P+C+ V+RFDL  T+  Y+
Sbjct: 497 GDIVGMN-VSFRQQFLALVKFRSGEINCLFATSVAEEGLDIPDCNLVVRFDLYNTLIQYV 555

Query: 510 QSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTY--- 566
           QSRGRAR  +S +  M+ER N     +L ++  +E+ +  +     PE   L        
Sbjct: 556 QSRGRARHSSSTYASMIERYNADHAARLVEVREAEK-LMQSFCETLPEDRILHGIDSEID 614

Query: 567 ------VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYEC 620
                  + +++I+ +TGA +T  S++ ++ RY   L  +K  + +  +       ++ C
Sbjct: 615 SILQGEEEKRTFIIRATGAKLTYHSALAILARYASSLQYEKETSAQATYVVLPQNNSFVC 674

Query: 621 ELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLIS 680
           E+ LP  +P + + G  +  K+ +KQ    + C  L +   L+DH            L +
Sbjct: 675 EVILPEKSPVRGLTGVPASKKSAAKQSAAFDTCVLLRKHKLLDDHF----NSVYHRRLPA 730

Query: 681 KKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVI---LHAYKFNFACSIVTEIYSGF 737
            +N  L  A T+ R   +      +L   WG++ G +   L A   +F  S         
Sbjct: 731 MRNARL--AITSSRTNQYDMLSKPSL---WGKQQGTLPEKLFATVISFIPSEPLRRRHRS 785

Query: 738 VLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGK 797
           ++L+  E   D  +F + L    +T+  T S    +H+ + ++     F    F+ +F K
Sbjct: 786 IILLTRERLPDFPSFTIFLDDDIETIVVTESVEEALHISSQELEYLSTFTFRIFHDVFHK 845

Query: 798 LFVK 801
            + +
Sbjct: 846 TYAE 849



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 149/434 (34%), Gaps = 131/434 (30%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P  +  S    P+++ RL++ ++A +      C + +  +     LEA T         
Sbjct: 1008 IPEEIAASCLAFPAIINRLDAYLIALE-----GCKTLDLSVKPEYALEAFTKDSDNTEEH 1062

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G  +++  ERLE LGD  LK A S  LF+  P   E      R   +CN  
Sbjct: 1063 RVQQIHVQRGMGKNY--ERLEFLGDCFLKMATSISLFVQNPDDDEFDFHVNRMCLICNKN 1120

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L      ++L  Y R   F    W  P  L+L               L G+    D +  
Sbjct: 1121 LFNTALKKELYQYTRSRGFSRHTWY-PDGLTL---------------LHGR----DHRKK 1160

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCIT 1240
            +        R    KT+AD  EALIGA  + GGL     M       A   V+ V D   
Sbjct: 1161 ISAESKHALR---EKTVADVCEALIGASLLSGGLHNQFDM-------AVKAVTAVVDSPN 1210

Query: 1241 RASL------RSYV--------PRINEI---KDIESKIGYEFTVKFLLQEAITHASVQEF 1283
              +L       SY+        P   E+   + +E K+GY F    LL  A TH S    
Sbjct: 1211 HKALCWADYTSSYMLPKYQTQSPDGYELDLGRKVEEKLGYRFKYPRLLHSAFTHPSYPST 1270

Query: 1284 Y----CYQN--------------------------------------------------L 1289
            +    CYQ                                                   L
Sbjct: 1271 WAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDKDPQWLTEHKMAMVSNKFLGALAVKLGL 1330

Query: 1290 YKHLQHCSTLLLSQITEYVKSFPKPGETTDSGP------SMKAPKALGDLLESIVGAVLI 1343
            + HL+H S  L SQIT Y +   +  E    G       +   PK L D++E+ +GA  +
Sbjct: 1331 HTHLRHFSNPLQSQITHYAEEI-QAAENESQGAVDYWLVTKDPPKCLPDMVEAYLGAAFV 1389

Query: 1344 DTKLNLDEVWRIFK 1357
            D+      V   F+
Sbjct: 1390 DSDFQFRVVEDFFQ 1403


>gi|148686841|gb|EDL18788.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Mus musculus]
          Length = 1908

 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 207/736 (28%), Positives = 349/736 (47%), Gaps = 109/736 (14%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K++A  I+   N   K  +FL  
Sbjct: 34  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVN 93

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L  L+ 
Sbjct: 94  SANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKN 153

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 154 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPEE 210

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 211 LEEKIQKLERILRSDA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 264

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + +A+L  +    +  +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 265 ELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 320

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    F + +L  I +   L ++ F         ++DL Y+
Sbjct: 321 -LQKYIKHEQE-ELHRKFLL----FTDTLLRKIHA---LCEEYF------SPASLDLKYV 365

Query: 396 STKLHELLQLFLSF---------------------------------------------- 409
           + K+ +LL++   +                                              
Sbjct: 366 TPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETN 425

Query: 410 --GKSTQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV 462
                T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K 
Sbjct: 426 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQ 485

Query: 463 -------QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
                  Q+EVL  FR  + NLL AT V+EEG+ +P C+ V+RFDLP    SY+QS+GRA
Sbjct: 486 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 545

Query: 516 RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS---- 571
           R   S ++++ +   +K   +     ++   +     S+  +         V  +     
Sbjct: 546 RAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDDEDAFPP 605

Query: 572 YIV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNA 628
           Y++  +  G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+
Sbjct: 606 YVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINS 665

Query: 629 PFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKN 683
           P + +IVGP   +  L++++V L  CEKLH++G L++HL+P    +V+   E +L  ++ 
Sbjct: 666 PLRASIVGPPMDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEE 725

Query: 684 ESLPG-AGTTKRKELH 698
            S+PG  G+TKR++ +
Sbjct: 726 TSVPGRPGSTKRRQCY 741



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 3/124 (2%)

Query: 1028 LPSVMQRLESL--MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGD 1085
            +P++M  +++L   + S+    +   SR       LIL+ALT     + F++ERLE+LGD
Sbjct: 1253 MPAMMNAVKALKDRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1312

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RW 1144
            S LK+A++ +LF TYP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W
Sbjct: 1313 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1372

Query: 1145 VAPG 1148
            + PG
Sbjct: 1373 LPPG 1376



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1791 PKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPET 1850

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1851 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1902

Query: 1441 KRI 1443
             ++
Sbjct: 1903 PQV 1905



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 947  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1006

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1007 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1065


>gi|148686840|gb|EDL18787.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Mus musculus]
          Length = 1916

 Score =  258 bits (658), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 207/736 (28%), Positives = 349/736 (47%), Gaps = 109/736 (14%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K++A  I+   N   K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L  L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLERILRSDA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + +A+L  +    +  +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    F + +L  I +   L ++ F         ++DL Y+
Sbjct: 329 -LQKYIKHEQE-ELHRKFLL----FTDTLLRKIHA---LCEEYF------SPASLDLKYV 373

Query: 396 STKLHELLQLFLSF---------------------------------------------- 409
           + K+ +LL++   +                                              
Sbjct: 374 TPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETN 433

Query: 410 --GKSTQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV 462
                T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K 
Sbjct: 434 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQ 493

Query: 463 -------QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
                  Q+EVL  FR  + NLL AT V+EEG+ +P C+ V+RFDLP    SY+QS+GRA
Sbjct: 494 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553

Query: 516 RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS---- 571
           R   S ++++ +   +K   +     ++   +     S+  +         V  +     
Sbjct: 554 RAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDDEDAFPP 613

Query: 572 YIV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNA 628
           Y++  +  G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+
Sbjct: 614 YVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINS 673

Query: 629 PFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKN 683
           P + +IVGP   +  L++++V L  CEKLH++G L++HL+P    +V+   E +L  ++ 
Sbjct: 674 PLRASIVGPPMDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEE 733

Query: 684 ESLPG-AGTTKRKELH 698
            S+PG  G+TKR++ +
Sbjct: 734 TSVPGRPGSTKRRQCY 749



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 3/124 (2%)

Query: 1028 LPSVMQRLESL--MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGD 1085
            +P++M  +++L   + S+    +   SR       LIL+ALT     + F++ERLE+LGD
Sbjct: 1261 MPAMMNAVKALKDRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1320

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RW 1144
            S LK+A++ +LF TYP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W
Sbjct: 1321 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1380

Query: 1145 VAPG 1148
            + PG
Sbjct: 1381 LPPG 1384



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1799 PKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPET 1858

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1859 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1910

Query: 1441 KRI 1443
             ++
Sbjct: 1911 PQV 1913



 Score = 44.3 bits (103), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|19072786|gb|AAL84638.1|AF484524_1 endoribonuclease Dicer [Mus musculus x Mus spretus]
          Length = 1539

 Score =  258 bits (658), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 207/736 (28%), Positives = 349/736 (47%), Gaps = 109/736 (14%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K++A  I+   N   K  +FL  
Sbjct: 26  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVN 85

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L  L+ 
Sbjct: 86  SANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKN 145

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 146 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPEE 202

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 203 LEEKIQKLERILRSDA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 256

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + +A+L  +    +  +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 257 ELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 312

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    F + +L  I +   L ++ F         ++DL Y+
Sbjct: 313 -LQKYIKHEQE-ELHRKFLL----FTDTLLRKIHA---LCEEYF------SPASLDLKYV 357

Query: 396 STKLHELLQLFLSF---------------------------------------------- 409
           + K+ +LL++   +                                              
Sbjct: 358 TPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETN 417

Query: 410 --GKSTQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV 462
                T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K 
Sbjct: 418 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQ 477

Query: 463 -------QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
                  Q+EVL  FR  + NLL AT V+EEG+ +P C+ V+RFDLP    SY+QS+GRA
Sbjct: 478 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 537

Query: 516 RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS---- 571
           R   S ++++ +   +K   +     ++   +     S+  +         V  +     
Sbjct: 538 RAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDDEDAFPP 597

Query: 572 YIV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNA 628
           Y++  +  G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+
Sbjct: 598 YVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINS 657

Query: 629 PFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKN 683
           P + +IVGP   +  L++++V L  CEKLH++G L++HL+P    +V+   E +L  ++ 
Sbjct: 658 PLRASIVGPPMDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEE 717

Query: 684 ESLPG-AGTTKRKELH 698
            S+PG  G+TKR++ +
Sbjct: 718 TSVPGRPGSTKRRQCY 733



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 3/124 (2%)

Query: 1028 LPSVMQRLESL--MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGD 1085
            +P++M  +++L   + S+    +   SR       LIL+ALT     + F++ERLE+LGD
Sbjct: 1245 MPAMMNAVKALKDRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1304

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RW 1144
            S LK+A++ +LF TY   HEG+LS  RS  V N  L++LG  + L   +  S FDP   W
Sbjct: 1305 SFLKHAITTYLFCTYHDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1364

Query: 1145 VAPG 1148
            + PG
Sbjct: 1365 LPPG 1368



 Score = 44.3 bits (103), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 939  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 998

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 999  SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1057


>gi|117168271|ref|NP_683750.2| endoribonuclease Dicer [Mus musculus]
 gi|225000568|gb|AAI72621.1| Dicer1, Dcr-1 homolog (Drosophila) [synthetic construct]
          Length = 1906

 Score =  258 bits (658), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 207/736 (28%), Positives = 349/736 (47%), Gaps = 109/736 (14%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K++A  I+   N   K  +FL  
Sbjct: 32  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVN 91

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L  L+ 
Sbjct: 92  SANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKN 151

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 152 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPEE 208

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 209 LEEKIQKLERILRSDA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 262

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + +A+L  +    +  +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 263 ELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 318

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    F + +L  I +   L ++ F         ++DL Y+
Sbjct: 319 -LQKYIKHEQE-ELHRKFLL----FTDTLLRKIHA---LCEEYF------SPASLDLKYV 363

Query: 396 STKLHELLQLFLSF---------------------------------------------- 409
           + K+ +LL++   +                                              
Sbjct: 364 TPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETN 423

Query: 410 --GKSTQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV 462
                T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K 
Sbjct: 424 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQ 483

Query: 463 -------QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
                  Q+EVL  FR  + NLL AT V+EEG+ +P C+ V+RFDLP    SY+QS+GRA
Sbjct: 484 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 543

Query: 516 RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS---- 571
           R   S ++++ +   +K   +     ++   +     S+  +         V  +     
Sbjct: 544 RAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDDEDAFPP 603

Query: 572 YIV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNA 628
           Y++  +  G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+
Sbjct: 604 YVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINS 663

Query: 629 PFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKN 683
           P + +IVGP   +  L++++V L  CEKLH++G L++HL+P    +V+   E +L  ++ 
Sbjct: 664 PLRASIVGPPMDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEE 723

Query: 684 ESLPG-AGTTKRKELH 698
            S+PG  G+TKR++ +
Sbjct: 724 TSVPGRPGSTKRRQCY 739



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 3/124 (2%)

Query: 1028 LPSVMQRLESL--MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGD 1085
            +P++M  +++L   + S+    +   SR       LIL+ALT     + F++ERLE+LGD
Sbjct: 1251 MPAMMNAVKALKDRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1310

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RW 1144
            S LK+A++ +LF TYP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W
Sbjct: 1311 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1370

Query: 1145 VAPG 1148
            + PG
Sbjct: 1371 LPPG 1374



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1789 PKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPET 1848

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1849 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1900

Query: 1441 KRI 1443
             ++
Sbjct: 1901 PQV 1903



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 945  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1004

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1005 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1063


>gi|257051057|sp|Q8R418.3|DICER_MOUSE RecName: Full=Endoribonuclease Dicer; AltName:
           Full=Double-strand-specific ribonuclease mDCR-1
          Length = 1916

 Score =  257 bits (657), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 207/736 (28%), Positives = 349/736 (47%), Gaps = 109/736 (14%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K++A  I+   N   K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L  L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLERILRSDA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + +A+L  +    +  +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    F + +L  I +   L ++ F         ++DL Y+
Sbjct: 329 -LQKYIKHEQE-ELHRKFLL----FTDTLLRKIHA---LCEEYF------SPASLDLKYV 373

Query: 396 STKLHELLQLFLSF---------------------------------------------- 409
           + K+ +LL++   +                                              
Sbjct: 374 TPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETN 433

Query: 410 --GKSTQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV 462
                T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K 
Sbjct: 434 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQ 493

Query: 463 -------QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
                  Q+EVL  FR  + NLL AT V+EEG+ +P C+ V+RFDLP    SY+QS+GRA
Sbjct: 494 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553

Query: 516 RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS---- 571
           R   S ++++ +   +K   +     ++   +     S+  +         V  +     
Sbjct: 554 RAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDDEDAFPP 613

Query: 572 YIV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNA 628
           Y++  +  G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+
Sbjct: 614 YVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINS 673

Query: 629 PFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKN 683
           P + +IVGP   +  L++++V L  CEKLH++G L++HL+P    +V+   E +L  ++ 
Sbjct: 674 PLRASIVGPPMDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEE 733

Query: 684 ESLPG-AGTTKRKELH 698
            S+PG  G+TKR++ +
Sbjct: 734 TSVPGRPGSTKRRQCY 749



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 3/124 (2%)

Query: 1028 LPSVMQRLESL--MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGD 1085
            +P++M  +++L   + S+    +   SR       LIL+ALT     + F++ERLE+LGD
Sbjct: 1261 MPAMMNAVKALKDRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1320

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RW 1144
            S LK+A++ +LF TYP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W
Sbjct: 1321 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1380

Query: 1145 VAPG 1148
            + PG
Sbjct: 1381 LPPG 1384



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1799 PKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPET 1858

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1859 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1910

Query: 1441 KRI 1443
             ++
Sbjct: 1911 PQV 1913



 Score = 44.3 bits (103), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|395330301|gb|EJF62685.1| hypothetical protein DICSQDRAFT_104190 [Dichomitus squalens
           LYAD-421 SS1]
          Length = 1453

 Score =  257 bits (657), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 192/688 (27%), Positives = 330/688 (47%), Gaps = 67/688 (9%)

Query: 41  SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLA 100
           S   +PR YQ ++F  A++ N IA L+TG+GKT I+ +LIK I+   + +   K+ +FL 
Sbjct: 9   SDTLLPRRYQEEIFVRAQQGNVIAALDTGSGKTFISTLLIKWISA--QESTEHKITVFLV 66

Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
           P V LV QQ + I   T   V  + GA   D  D   W  +    DV VMT QI L+ L 
Sbjct: 67  PKVALVQQQGEFIAKQTSLRVRMFSGATAHDMSDRGGWANDFETADVFVMTAQIFLNLLT 126

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN-KPKVFGMTASPVVRKGVSSA 219
            +  SL  VC +V DECHH   NH Y  IM+E++  ++  +PKVFGMTASP+      + 
Sbjct: 127 HSHWSLSKVCLLVFDECHHTRKNHAYNGIMREYFQTAEGCRPKVFGMTASPIW-----NP 181

Query: 220 MDCEGQISELESTLDSQVFTIEDKT-EMEVFVPSAKESCRFYDQS-----KFCGSDLKGK 273
            +    +S LE  LD++V  +++   E+    P  +E  + Y Q+     ++    L+ +
Sbjct: 182 RNAAESLSTLEKNLDAKVIAVKEHVDELIGHSPRPEELIKTYRQAPEVYPEYQKKSLRLR 241

Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
           L +  +  +  +             +  +++     L  + A+ L+   E+        V
Sbjct: 242 LALHNTPPEVGIPA---------DKILTRYEVTYYSLGPFGAE-LFLYTEM----KQRVV 287

Query: 334 KICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVD-- 391
           ++  E +  A E     + +++    +L EV   +   L   + I  +F  D+    D  
Sbjct: 288 QLIQEAIESAMEVLTAEQYANVAHGGYLSEVPDAVHPKLREFENILAEFSADFDDPPDGV 347

Query: 392 ------LGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT- 444
                 L + S K+  L +   S   ST    I+FVE+   A  +   ++++PFL H   
Sbjct: 348 LPTPIPLSWCSPKVKVLAEELFSRYTST-FQGIVFVEQRHIATCLASMLRRIPFLVHTIK 406

Query: 445 ----VAYLTGST--TSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
               V + +G+   + +  +  + Q++ ++ FR  ++NLL AT V EEG+  P C  VIR
Sbjct: 407 CEPLVGHGSGAVAKSHLKGMAMRNQRDTVQLFRERRLNLLVATSVAEEGLDFPACDLVIR 466

Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEA 558
           FD  + +  Y+QSRGRAR   S FI+M++ G+  Q  +  + +RSE  +      RD   
Sbjct: 467 FDPVQHMVGYLQSRGRARHKTSTFIIMVQEGSQAQAERYLEFLRSEPHLKKVYQQRDLVP 526

Query: 559 CFLKACT----------YVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPI 608
             ++               + + Y+V STGA +T +++++L++  C ++P D+ +TP   
Sbjct: 527 PDVEEEEDESDAPDPFDLARRERYVVPSTGAILTYNTAISLLNHLCSLIPRDR-FTPMHA 585

Query: 609 FKYKSAEEAYECELTLPSNAPFQTIV----GPTSRNKNLSKQLVCLEACEKLHQVGALND 664
            +Y      +   +TLPS  P  + +    GP  R+K  +++     A + LH +   +D
Sbjct: 586 PRYTG---DFVATVTLPSTLPLPSNLLVYEGPPKRSKKEARRAAAFFAVKSLHALNVFDD 642

Query: 665 HLLP-----SVEEPSENNLISKKNESLP 687
           +LLP     + ++   + +  K  ES+P
Sbjct: 643 YLLPAKSSGAAQDEDSDGVPIKNVESVP 670



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 130/318 (40%), Gaps = 38/318 (11%)

Query: 998  TKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHI 1057
            +K   + V +P EL     +P  V +S  +LP +  RL  +  A ++R  +        I
Sbjct: 893  SKDAGLTVILPIELCRWALIPRHVYQSFSILPELCHRLTDVWRAHEVRTALKLPP----I 948

Query: 1058 PSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1117
               L+++A+T       F+ +RLE  GD+VLK     HL+  YP +HEGQL   +  A+ 
Sbjct: 949  VDDLLVQAITLPSANAGFNNQRLETFGDAVLKLCAVVHLYNRYPHRHEGQLDNMKRTAIA 1008

Query: 1118 NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDT 1177
            N TL     +  L+ ++       R W                             T D 
Sbjct: 1009 NRTLLARALEHGLEEHLTPETQSIRLW-------------------------RYVVTGDE 1043

Query: 1178 KVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDD 1237
             +   +PC    R    +++ DC EA++GA +  GG+  AL     LG    L       
Sbjct: 1044 ALFAVRPCRRALRQYPRRSLQDCMEAILGASFATGGIDMALRAGTALG----LSFGGPTP 1099

Query: 1238 CITRASLR-SYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHC 1296
               R S R    P       ++  +GY F    LL EAITH S +   C  + Y+ L+  
Sbjct: 1100 WYVRYSGRLKEAPAAPLFAGLQETLGYTFKHGHLLLEAITHPSFRSTDC--SSYQRLEFL 1157

Query: 1297 STLLLSQ-ITEYV-KSFP 1312
                +   +TEY+ + FP
Sbjct: 1158 GDAFIDMVVTEYLYRKFP 1175



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 1061 LILEALT--TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118
            L+LEA+T  +    +  S +RLE LGD+ +   V+ +L+  +P    GQLS  RS AVC 
Sbjct: 1133 LLLEAITHPSFRSTDCSSYQRLEFLGDAFIDMVVTEYLYRKFPSATSGQLSWARSRAVCG 1192

Query: 1119 STLHKLGTDR 1128
                 +   R
Sbjct: 1193 PAFASIAVKR 1202


>gi|158706522|sp|Q4WVE3.3|DCL1_ASPFU RecName: Full=Dicer-like protein 1; Includes: RecName:
           Full=Endoribonuclease dcl1; Includes: RecName:
           Full=ATP-dependent helicase dcl1
          Length = 1537

 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 185/632 (29%), Positives = 316/632 (50%), Gaps = 63/632 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD-IAQAI--KSNG-FKKLIIFLAP 101
           PR YQ+++FE AK +NTIAVL+TG+GKT+IAV+L++  I   +  ++NG   ++  FL  
Sbjct: 126 PREYQIELFERAKTQNTIAVLDTGSGKTLIAVLLLRHTILNELDDRANGKTHRVSFFLVD 185

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V L +QQ  V+R + D  V  ++GA G D WD + W K + +N V+V T +IL   L  
Sbjct: 186 SVTLAYQQAAVLRNNIDQNVAHFFGAMGTDLWDKRTWDKHLQRNMVIVCTAEILNQCLLN 245

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSA 219
           +++ +D +  ++ DE HHA  +HPY +I+++ Y K+    +P+VFGMTASP+  KG    
Sbjct: 246 SYVRMDQINLLIFDEAHHAKKDHPYARIIRDSYFKAQPSQRPRVFGMTASPIDTKG---- 301

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
            D     + LE+ LDS++ T    T +   V    E    Y+           +LE  ++
Sbjct: 302 -DITEAATRLETFLDSRIATTSKITLLREVVSRPIEKVWAYN-----------RLEPPFA 349

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339
                           YK MD ++  + K L   +        ELG  C+  A    L  
Sbjct: 350 T-------------ELYKLMDTRYGNI-KVLEGVYRFAWNASSELGKWCSDRAWWHALAD 395

Query: 340 VLKAQEECEIYR---QSSLQCKY--FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGY 394
            +  + E  I +    ++++ ++    ++++ +  ++  + +  F D           G 
Sbjct: 396 DVLPKLEGNINKLIESNTMKAEHGAVFKDIIRIREASETVKNYFFTDPELP-------GE 448

Query: 395 ISTKLHEL-LQLFLSFGKSTQVLCIIFVERIIAAKVVERF--VKKVPFLT-HLTVAYLTG 450
           +S K+  L ++L   F  +T   CI+F ++   AK++     V  +P L   + +    G
Sbjct: 449 LSPKVQRLRMELSKHFNDTTGTKCIVFTQKRYTAKILNELFTVLNIPNLRPGVLIGVRPG 508

Query: 451 STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510
               ++ +T + Q   L  FR G++N LFAT V EEG+ +P+C+ VIRFDL +T+  Y+Q
Sbjct: 509 DIGGMN-ITFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCNLVIRFDLYRTLIQYVQ 567

Query: 511 SRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTY---- 566
           SRGRAR   S + +M+E+ N +   +L + IR   ++        PE   L    +    
Sbjct: 568 SRGRARHCTSTYAIMVEKDNAEHEGRLKE-IREAENIMRRFCEILPEDRILHGNDHDLDS 626

Query: 567 -----VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECE 621
                   +++ V+STGA +T  S++ ++ RY   L  +K   P+  +    A  AY CE
Sbjct: 627 FLQEEEGRRTFTVKSTGAKLTYHSAIAILARYASSLQYEKETVPQVTYVVTIASNAYVCE 686

Query: 622 LTLPSNAPFQTIVGPTSRNKNLSKQLVCLEAC 653
           + LP  +P + + G  +  K ++K+    + C
Sbjct: 687 VILPEKSPIRGLTGSPAMRKAVAKRSAAFDTC 718



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 156/434 (35%), Gaps = 118/434 (27%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P S+V +    P+++ RL+S ++A +      C      I     LEA T         
Sbjct: 1020 LPPSIVSTCLAFPAIISRLDSYLIALEA-----CDELELVIRPDFALEAFTKDSDNTEEH 1074

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G  +++  ERLE LGD  LK A S  LF   P   E      R   +CN  
Sbjct: 1075 RGQQIHFQRGMGKNY--ERLEFLGDCFLKMATSIALFSQNPNDDEFDYHVNRMCLICNKN 1132

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L      +++  YIR   F    W  P  L+L               L GK     TK++
Sbjct: 1133 LFNTAIKKQIYRYIRSRGFSRHIWY-PDGLTL---------------LHGK--DHSTKLL 1174

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG----LIAALYMMKWLGIDADLEVSLVD 1236
                   G   +G KTIAD  EALIGA  + GG       A   +  L       VS   
Sbjct: 1175 -----SEGKHALGEKTIADVCEALIGASLLSGGPEHRFDMATKAVSALVDSPSHRVSCWK 1229

Query: 1237 DCITRASLRSYVPRINE------IKDIESKIGYEFTVKFLLQEAITHASVQEFY-----C 1285
            + IT  +L  Y    +        + +E ++GY FT   LL  AITH S+   +     C
Sbjct: 1230 EYITLYTLPKYQTEKHRGSEDDLARHVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPC 1289

Query: 1286 YQNL--------------------------------------------------YKHLQH 1295
            YQ L                                                  ++ +  
Sbjct: 1290 YQRLEFLGDSLLDMVCVEDLFRRFPDRDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMA 1349

Query: 1296 CSTLLLSQITEYVKSFPKPGETTDSGP------SMKAPKALGDLLESIVGAVLIDTKLNL 1349
             S  L +QIT YV+   +  +    G       +   PK L D++E+ +GA+ +D+K + 
Sbjct: 1350 FSNPLQAQITHYVEEI-ETAQAESQGAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDF 1408

Query: 1350 DEVWRIFKPILSPI 1363
              +   F+  + P 
Sbjct: 1409 QVIEAFFERQIKPF 1422


>gi|154301554|ref|XP_001551189.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10]
          Length = 1842

 Score =  257 bits (656), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 317/1311 (24%), Positives = 529/1311 (40%), Gaps = 225/1311 (17%)

Query: 46   PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
            PR YQL++FE AK++N IAVL+TG+GKT IAV+L++ I                      
Sbjct: 423  PRDYQLELFEKAKKQNIIAVLDTGSGKTFIAVLLLRWI---------------------- 460

Query: 106  VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            + Q+ +   +     V  +             W+K ++ N V+V T +IL   L  +F++
Sbjct: 461  IDQELEDRAIGKPHRVSFF------------LWKKRLDTNMVIVCTAEILRQCLHHSFVT 508

Query: 166  LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPV-VRKGVSSAM 220
            +  +  ++ DE HHA  +HPY +I+K+FY     K    PK+FGMTASPV  R  V  A 
Sbjct: 509  MAQINLLIFDEAHHAKKDHPYARIIKDFYRNDTEKDIALPKIFGMTASPVDARDNVKKAA 568

Query: 221  DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280
            +      ELE  L SQ+ T ED + ++  +    E+  +YD                  K
Sbjct: 569  E------ELEGLLHSQICTAEDPSLLQYSIKGKPETLAYYDPLG--------------PK 608

Query: 281  FDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE-- 338
            F+  L  LQ   L   KD     K              +C+D++   C  E     L+  
Sbjct: 609  FNTPLY-LQ--MLPLLKDNPIFRKPFVFGTEASRTLGSWCVDQIWTFCLQEEESKKLQAR 665

Query: 339  --------KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV 390
                    +V +  E  E  ++   Q K  +E   H        A ++  DF    +K  
Sbjct: 666  TEQAHHKKRVPEPLEVLEKRKEQLEQAKSIVEN--HTFEPPH-FASRLLDDFT---TKVH 719

Query: 391  DLGYISTKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKK----VPFLTHLTV 445
                +STK+  LL +    F + T   CI+FV+    A+++   +       PFL    +
Sbjct: 720  YSNNLSTKVVALLSILKDRFQRPTNDKCIVFVKERYTARLLASLLSTPEAGTPFLKAAPL 779

Query: 446  AYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTV 505
               T ++     +T + Q   + +FR GK+N L AT V EEG+ +P+C+ V+RFDL  TV
Sbjct: 780  VGTTSASAGEMHITFRSQTLTMHNFRNGKINCLIATSVAEEGLDIPDCNLVVRFDLYNTV 839

Query: 506  SSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACT 565
              YIQSRGRAR  NS++  M+E  N +Q   + ++++ E+ +   A S  PE   L    
Sbjct: 840  IQYIQSRGRARHINSRYYHMVESHNEEQIRTIKEVLKHEKMLKLFA-SALPEDRKLTGNN 898

Query: 566  YVKT---------KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE 616
            +            + Y V ++ A +T   S+ ++  + + LP       +  +   + ++
Sbjct: 899  FNMDYFLRKERGHRIYPVPNSDAKLTYRMSLTVLSAFVDSLPRAPESVLRVDYVVTTVDK 958

Query: 617  AYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSEN 676
             + CE  LP  AP +  +G  +  K ++K     E C  LHQ G +ND+LL + +  +  
Sbjct: 959  QFICEAILPEEAPIRGAIGRPATTKQVAKCSAAFETCVILHQKGYINDYLLSTFKRSAH- 1017

Query: 677  NLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSG 736
                 +N  L   G  K++E +       L    G K G+         +   +      
Sbjct: 1018 ---MMRNALLAVDG--KKQEAYDMQTKPTLWSSKG-KQGIFYMTVLSLKSPDNLDRASQP 1071

Query: 737  FVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFG 796
              LL  S L  D+  F L       +  + V  +  + L+ +++ +   F    F  +F 
Sbjct: 1072 LGLLTRSPLP-DLPEFVLHFGAGRNSPTSCVPLASSITLEKNKLDQVNMFTLCLFQDVFS 1130

Query: 797  KLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASV- 855
            K +             K + +S+      Y L+P+  +N        ++W   NP + + 
Sbjct: 1131 KAY-------------KSDPDSM-----PYFLVPINCLNAI------VDWKSQNPMSIID 1166

Query: 856  ---VEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVV 912
               VE++         Q   N     P    P      GK   +  +  +         +
Sbjct: 1167 WETVEYV---------QDFENKQADKPWEHKPWL----GKPDDYFKDKFITDPFDGSRKL 1213

Query: 913  LAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTF---VNYFSEKYGIVLIHPGQPLLRL 969
             ++   + Y  ++ V  ++A  P  G   ++S       + +++          QP++  
Sbjct: 1214 WSVGITKEYRPLDPVPPNTA--PRKGARKNNSNIMEYSCSLWAKARAKRTFDEEQPVIEA 1271

Query: 970  KQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLP 1029
                   NLL  F+  GG  + SK      +P          L    +P +V    YLLP
Sbjct: 1272 TYISLRRNLLDEFD--GGELETSKKSFIILEP----------LKVSPLPTTVGAMAYLLP 1319

Query: 1030 SVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT----------------TLGCCE 1073
            +++ R+ES ++A +  + ++   R       L LEA+T                  G   
Sbjct: 1320 AIIHRVESYLIALEATDLLHLDIR-----PDLALEAVTKDSDNSGEHGEEQTNFQRGMGN 1374

Query: 1074 SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGY 1133
            ++  ERLE LGD  LK   S  L+   P   E +    R   +CN  L       +L  Y
Sbjct: 1375 NY--ERLEFLGDCFLKMGTSISLYGLNPDSDEFRYHVDRMCLICNKNLFNTALKLELYKY 1432

Query: 1134 IRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMG 1193
            IR +AF+ R W   G   LR                GK  T              H+ +G
Sbjct: 1433 IRSAAFNRRAWYPEGPELLR----------------GKTATAPNT----------HK-LG 1465

Query: 1194 SKTIADCAEALIGA----YYVGGGLIAALYMMKWLGIDADLEVSLVDDCITR-------A 1242
             K++AD  EA+IGA    ++    +  A+  +  + +++D   ++V     +        
Sbjct: 1466 DKSVADVCEAMIGAALLSHHESKSMDNAVRAVTEV-VNSDNHNAVVWSDYYKLYEKPKWQ 1524

Query: 1243 SLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY----CYQNL 1289
            +  +   +I+  + +E K  Y F    LL+ A  H +    Y    CYQ L
Sbjct: 1525 TATATAAQIDMARQVEMKHPYHFKHPRLLRSAFIHPAYLFIYEQIPCYQRL 1575


>gi|239607869|gb|EEQ84856.1| dicer-like protein [Ajellomyces dermatitidis ER-3]
          Length = 1522

 Score =  257 bits (656), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 202/690 (29%), Positives = 328/690 (47%), Gaps = 93/690 (13%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFK-KLIIFLAP 101
           PR YQL++FE AK  NTIAVL+TG+GKT+IAV+L+K + Q   A ++NG   ++  FL  
Sbjct: 90  PREYQLELFEKAKTANTIAVLDTGSGKTLIAVLLLKQMIQNELADRANGKPPRISFFLVD 149

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV LV+QQ  V++ + D  ++++ GA   D W    W K  ++N ++V T ++L   L +
Sbjct: 150 TVTLVYQQAAVLKANIDQNIDKFCGAMQTDLWSKDTWDKHFSRNMIIVCTAEVLHQCLLR 209

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS---DNKPKVFGMTASPVVRKGVSS 218
           +F+ ++ +  ++ DE HHA  +HPY +I+K+FY +     N+PK+FGMTASP     V +
Sbjct: 210 SFIQMERINLLIFDEAHHAKKDHPYARIIKDFYLQKIVVQNRPKIFGMTASP-----VDA 264

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
            +D       LE+ LDSQ+ T  +   +   +P   E    YD                 
Sbjct: 265 KVDVVKAAMTLEALLDSQIATASNLNALRQAIPRPNEQMWVYD----------------- 307

Query: 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338
            + D        S+   YK M  +   +R +L    +  L     LG  C+       L+
Sbjct: 308 -RLD------DPSETELYKSMQSRFGRIR-ELEKIFSFALEASSTLGRWCSDWLWTFALD 359

Query: 339 KVLKAQEECEIYR-----QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393
           +    + E +I +     +S  Q K   E +  +  +A  +    F      Y+      
Sbjct: 360 EAELPKLEGKISKSYMQSRSGNQLKGADEAIDLLREAAQLIKSHAF------YTPVDCTE 413

Query: 394 YISTKLHELL-QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG-- 450
           ++S+K+  L  +L + F + T   CI+F+++   A+++     ++    H+    L G  
Sbjct: 414 HLSSKVRLLSHELSMYFERHTDTKCIVFIQQRYTARLLAELFSRIG-TQHMRTGVLIGVR 472

Query: 451 -STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
                    + + Q   L  FR G++N LFAT V EEG+ +P+C+ VIRFDL  T+  Y+
Sbjct: 473 HDGIGGANFSFRQQFLTLLKFRKGELNCLFATSVAEEGLDIPDCNLVIRFDLNSTMIQYV 532

Query: 510 QSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD--TAL--------SRDPEAC 559
           QSRGRAR  +S +  M+ER NL   + + ++ R+E  +     AL        S D    
Sbjct: 533 QSRGRARHSHSIYAHMVERDNLIHSSSVEEVQRAENIMRRFCEALPEDRIIRGSSDDLGM 592

Query: 560 FLKACTYVKTKSYIVESTGASVTTDSSVNLIH-------------RYCEMLPSDKY---Y 603
            L    Y    S+ + STGA +T +SS+ ++              RY E   S +Y    
Sbjct: 593 ILDNERY--RNSFTIHSTGAKLTYESSLAVLAHYASSLVRVSARGRYIEANISKQYENDM 650

Query: 604 TPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALN 663
           + +  +  +  + A+ CE +LP  +PF+ + G  S  K  +KQ    E C  L + G L+
Sbjct: 651 SAQVNYFIERIDGAFVCEASLPEKSPFRGMTGKPSARKLHAKQSAAFETCLMLRKNGLLD 710

Query: 664 DHLLPSVEEPSENNLISKKNESLPGAGTTK 693
           DH             +SK ++ LP     K
Sbjct: 711 DH------------FVSKYHKRLPAMRNAK 728



 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 150/412 (36%), Gaps = 118/412 (28%)

Query: 1031 VMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT----------------TLGCCES 1074
            ++ RLES +++ +      C   + +I + L LEALT                  G  ++
Sbjct: 1019 IISRLESYLISLEA-----CDMLHINIKTHLALEALTKDSDNTEEHRGEQIHFQRGMGKN 1073

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
            +  ERLE LGD  LK A S  LF   P   E     +R   +CN  L       KL  +I
Sbjct: 1074 Y--ERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFI 1131

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
            R   F  R W   G + L               L GK           K        +G 
Sbjct: 1132 RTQGFSRRNWYPEG-IKL---------------LQGK----------AKSESQNKHSLGD 1165

Query: 1195 KTIADCAEALIGAYYVGGG----LIAALYMMKWLGIDADLEVSLVDDCITRASLRSY--- 1247
            KTIAD  EALIGA  + GG      +A+  +       D   S  +  +   SL  Y   
Sbjct: 1166 KTIADICEALIGASLLSGGKAHRFDSAVKAVTTFVNSDDHRASEWNCYVNLYSLPDYQIA 1225

Query: 1248 ---VPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY----CYQN------------ 1288
                 +++  K I  ++GY+F    LL+ A THAS    +    CYQ             
Sbjct: 1226 QADAGQLDLAKQIGDRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMV 1285

Query: 1289 --------------------------------------LYKHLQHCSTLLLSQITEYVKS 1310
                                                  L++HL + S  LL QIT YV+ 
Sbjct: 1286 CVEYLYHRYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEE 1345

Query: 1311 FPKPGETTDSGP-----SMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFK 1357
                   +++ P     +   PK L D+LE+ +GA+ +D+    + V   F+
Sbjct: 1346 IELAEADSNNSPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQ 1397


>gi|261198280|ref|XP_002625542.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
 gi|239595505|gb|EEQ78086.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
          Length = 1522

 Score =  257 bits (656), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 202/690 (29%), Positives = 328/690 (47%), Gaps = 93/690 (13%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFK-KLIIFLAP 101
           PR YQL++FE AK  NTIAVL+TG+GKT+IAV+L+K + Q   A ++NG   ++  FL  
Sbjct: 90  PREYQLELFEKAKTANTIAVLDTGSGKTLIAVLLLKQMIQNELADRANGKPPRISFFLVD 149

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV LV+QQ  V++ + D  ++++ GA   D W    W K  ++N ++V T ++L   L +
Sbjct: 150 TVTLVYQQAAVLKANIDQNIDKFCGAMQTDLWSKDTWDKHFSRNMIIVCTAEVLHQCLLR 209

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS---DNKPKVFGMTASPVVRKGVSS 218
           +F+ ++ +  ++ DE HHA  +HPY +I+K+FY +     N+PK+FGMTASP     V +
Sbjct: 210 SFIQMERINLLIFDEAHHAKKDHPYARIIKDFYLQKIVVQNRPKIFGMTASP-----VDA 264

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
            +D       LE+ LDSQ+ T  +   +   +P   E    YD                 
Sbjct: 265 KVDVVKAAMTLEALLDSQIATASNLNALRQAIPRPNEQMWVYD----------------- 307

Query: 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338
            + D        S+   YK M  +   +R +L    +  L     LG  C+       L+
Sbjct: 308 -RLD------DPSETELYKSMQSRFGRIR-ELEKIFSFALEASSTLGRWCSDWLWTFALD 359

Query: 339 KVLKAQEECEIYR-----QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393
           +    + E +I +     +S  Q K   E +  +  +A  +    F      Y+      
Sbjct: 360 EAELPKLEGKISKSYMQSRSGNQLKGADEAIDLLREAAQLIKSHAF------YTPVDCTE 413

Query: 394 YISTKLHELL-QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG-- 450
           ++S+K+  L  +L + F + T   CI+F+++   A+++     ++    H+    L G  
Sbjct: 414 HLSSKVRLLSHELSMYFERHTDTKCIVFIQQRYTARLLAELFSRIG-TQHMRTGVLIGVR 472

Query: 451 -STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
                    + + Q   L  FR G++N LFAT V EEG+ +P+C+ VIRFDL  T+  Y+
Sbjct: 473 HDGIGGANFSFRQQFLTLLKFRKGELNCLFATSVAEEGLDIPDCNLVIRFDLNSTMIQYV 532

Query: 510 QSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD--TAL--------SRDPEAC 559
           QSRGRAR  +S +  M+ER NL   + + ++ R+E  +     AL        S D    
Sbjct: 533 QSRGRARHSHSIYAHMVERDNLIHSSSVEEVQRAENIMRRFCEALPEDRIIRGSSDDLGM 592

Query: 560 FLKACTYVKTKSYIVESTGASVTTDSSVNLIH-------------RYCEMLPSDKY---Y 603
            L    Y    S+ + STGA +T +SS+ ++              RY E   S +Y    
Sbjct: 593 ILDNERY--RNSFTIHSTGAKLTYESSLAVLAHYASSLVRVSARGRYMEANISKQYENDM 650

Query: 604 TPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALN 663
           + +  +  +  + A+ CE +LP  +PF+ + G  S  K  +KQ    E C  L + G L+
Sbjct: 651 SAQVNYFIERIDGAFVCEASLPEKSPFRGMTGKPSARKLHAKQSAAFETCLMLRKNGLLD 710

Query: 664 DHLLPSVEEPSENNLISKKNESLPGAGTTK 693
           DH             +SK ++ LP     K
Sbjct: 711 DH------------FVSKYHKRLPAMRNAK 728



 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 150/412 (36%), Gaps = 118/412 (28%)

Query: 1031 VMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT----------------TLGCCES 1074
            ++ RLES +++ +      C   + +I + L LEALT                  G  ++
Sbjct: 1019 IISRLESYLISLEA-----CDMLHINIKTHLALEALTKDSDNTEEHRGEQIHFQRGMGKN 1073

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
            +  ERLE LGD  LK A S  LF   P   E     +R   +CN  L       KL  +I
Sbjct: 1074 Y--ERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFI 1131

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
            R   F  R W   G + L               L GK           K        +G 
Sbjct: 1132 RTQGFSRRNWYPEG-IKL---------------LQGK----------AKSESQNKHSLGD 1165

Query: 1195 KTIADCAEALIGAYYVGGG----LIAALYMMKWLGIDADLEVSLVDDCITRASLRSY--- 1247
            KTIAD  EALIGA  + GG      +A+  +       D   S  +  +   SL  Y   
Sbjct: 1166 KTIADICEALIGASLLSGGKAHRFDSAVKAVTTFVNSDDHRASEWNCYVNLYSLPDYQIA 1225

Query: 1248 ---VPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY----CYQN------------ 1288
                 +++  K I  ++GY+F    LL+ A THAS    +    CYQ             
Sbjct: 1226 QADAGQLDLAKQIGDRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMV 1285

Query: 1289 --------------------------------------LYKHLQHCSTLLLSQITEYVKS 1310
                                                  L++HL + S  LL QIT YV+ 
Sbjct: 1286 CVEYLYHRYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEE 1345

Query: 1311 FPKPGETTDSGP-----SMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFK 1357
                   +++ P     +   PK L D+LE+ +GA+ +D+    + V   F+
Sbjct: 1346 IELAEADSNNSPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQ 1397


>gi|393238576|gb|EJD46112.1| P-loop containing nucleoside triphosphate hydrolase protein
           [Auricularia delicata TFB-10046 SS5]
          Length = 1427

 Score =  256 bits (655), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 214/681 (31%), Positives = 318/681 (46%), Gaps = 63/681 (9%)

Query: 23  MGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD 82
           M S G D A               R YQ ++F  A++ N IAVL+TG+GKT IAV LIK 
Sbjct: 1   MSSQGQDAA--------RPAQLEARRYQEEIFVAAQQGNIIAVLDTGSGKTFIAVQLIKW 52

Query: 83  I-AQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDE-----WDSQ 136
           + AQ       +K+++FLAP   LV QQ   I+       + Y G   VD+     WD +
Sbjct: 53  VTAQPCPE---RKVVVFLAPKRPLVMQQALFIQSQVPLNTQYYLGDMTVDDKKVELWDRE 109

Query: 137 CWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196
            W+KE  K DVLVMTPQILLD L  A   +  +  +V DE HHA G HPY++I+K+F   
Sbjct: 110 QWRKEFTKRDVLVMTPQILLDLLTHAHWQMSKISLLVFDEAHHAQGKHPYSQILKQFVST 169

Query: 197 --SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI-EDKTEMEVFVPSA 253
                +PK+FGMTASP        A   + Q+  LEST+++++  + E + E+   V   
Sbjct: 170 LPVGKRPKIFGMTASP-----TWDAKRAQKQLDALESTMNARIIAVKEHQVELSKHVSRP 224

Query: 254 KESCRFYDQSKFCGSDLKGKLEVSWSKF-DASLSKLQGSQLNCYKDMDDKHKTLRKQLSD 312
           KE    Y        +  G  +   +   DA LS   G         D     L K + D
Sbjct: 225 KELVYLYQSYDPSRRETYGLDDTEAAALEDAPLSP--GDVPTVPGVWDVLSPLLEKDVPD 282

Query: 313 Y---HAKILYCLDELGL----ICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL 365
           +     +    LD LG     + A+        K+L A  +  I   +    +    E L
Sbjct: 283 FSKLKTRRDVLLDSLGPYAAELFAHRYFTALAGKLLDAARKAAISATAKSLARVKRLEDL 342

Query: 366 HVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII 425
           H   +A       FL  GF   +  D   +S KL  LL   L         C+IFVE+  
Sbjct: 343 HARLAA-------FLS-GFVPGEIPD-ALVSPKLR-LLGDVLCENHDEHFKCVIFVEQKH 392

Query: 426 AAKVVERFVKKVPFLTHLTVAYLTGSTTS----VDALTPKVQKEVLESFRGGKVNLLFAT 481
            A  +   + ++  L  ++ A L G +T+    +  +  K Q EV++ FR  K N+L AT
Sbjct: 393 IAMTLAELLPRLSELDWVSPAALIGHSTTGETDIGGMDSKQQAEVVKGFRASKYNVLLAT 452

Query: 482 DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGN---LKQRNKLF 538
            V EEG+    C  VIRFD  + + SY+QSRGRAR  NS ++++L R +   L +   + 
Sbjct: 453 SVAEEGLDFQACHLVIRFDGLQNLISYVQSRGRARHANSTYVVLLPRDDPLALTKYEGMR 512

Query: 539 D---IIRSERSVTDTALSRDP-EACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYC 594
           D   ++R + +    A S +P +     A      + Y+V STGA++T D+++ L+   C
Sbjct: 513 DAEPLLREQYAAFTAAESVEPLDTDEPSAADLALQQQYVVPSTGATLTYDTAIPLLELLC 572

Query: 595 EMLPSDKYYTPKPIFKYKS-AEEAYECELTLPSNAPFQTIV-----GPTSR-NKNLSKQL 647
              PSD+Y   +P +  +   E+A+   + LP   P          G   R +K  +++ 
Sbjct: 573 ASAPSDQYGVLRPSYTVEELGEQAFRAAVALPPALPLPRAALRFDSGDEPRKSKREARRA 632

Query: 648 VCLEACEKLHQVGALNDHLLP 668
               A  +LH +G  +DHLLP
Sbjct: 633 AAFAAVAELHSLGVFDDHLLP 653



 Score = 70.5 bits (171), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 96/223 (43%), Gaps = 45/223 (20%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            ++EA T       F  +RLE LGD+ LK  VS + F  +P KHEGQL+  R  ++ N +L
Sbjct: 958  LIEATTLPPAMMGFDNQRLETLGDAFLKLGVSVYAFHAFPFKHEGQLTNVRIPSISNKSL 1017

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVV 1181
                    LQ Y+       R+W                                 ++  
Sbjct: 1018 LARARAFNLQRYLSVEVSSRRKW-------------------------------SPRLTN 1046

Query: 1182 GKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITR 1241
            GK        M  +++ +C EAL+GA +  GG+  AL +   LG    L     D   T 
Sbjct: 1047 GK------VEMPRRSMQECVEALLGAAFASGGVPCALAVGGKLG----LCFGPPDKLWTE 1096

Query: 1242 ASLRSYVP---RINEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281
              ++  VP   R   + +++ ++G+EF  + LL EA+TH S+Q
Sbjct: 1097 RYVKP-VPSPLRRPLLHELQQRLGHEFANETLLLEAVTHRSMQ 1138



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 1060 SLILEALT--TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1117
            +L+LEA+T  ++   E+ S ERLE LGD++L  AV  +LF  YP+   GQLS  R  AVC
Sbjct: 1126 TLLLEAVTHRSMQSSETPSYERLEFLGDALLDMAVMQYLFKKYPQATCGQLSWARQRAVC 1185

Query: 1118 NSTLHKLGTDR 1128
            NSTL  +   R
Sbjct: 1186 NSTLAWIAATR 1196


>gi|62320294|dbj|BAD94606.1| CAF protein [Arabidopsis thaliana]
          Length = 690

 Score =  255 bits (652), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 219/721 (30%), Positives = 316/721 (43%), Gaps = 155/721 (21%)

Query: 954  KYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELL 1012
            +YG+ L    QPL++ +      NLL   F   G S               +V +PPEL 
Sbjct: 43   RYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGES-------ETVLDKTYYVFLPPELC 95

Query: 1013 VRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCC 1072
            V   +  S+++    LPS+M+R+ES++LA QL+  I+     + IP+S ILEALT   C 
Sbjct: 96   VVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLIS-----YPIPTSKILEALTAASCQ 150

Query: 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQG 1132
            E+F  ER ELLGD+ LK+ VS  LFL YP+KHEGQL+  R   V N  L++    + LQ 
Sbjct: 151  ETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQS 210

Query: 1133 YIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDG--KFFTQDTKVVVGKPCDM--- 1187
            YI+   F P RW APG      VP     DT     DG   FF ++ K V  +  D+   
Sbjct: 211  YIQADRFAPSRWSAPG------VPPVFDEDT----KDGGSSFFDEEQKPVSEENSDVFED 260

Query: 1188 -------------GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSL 1234
                          +R + SKT+AD  EALIG YYV GG IAA ++MKW+GI  + +   
Sbjct: 261  GEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDE 320

Query: 1235 VDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQN---- 1288
            VD  +   ++   V +  +   +E  + YEF  K LL EAITHAS       CYQ     
Sbjct: 321  VDGTLKNVNVPESVLKSIDFVRLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFV 380

Query: 1289 ----------------------------------------------LYKHLQHCSTLLLS 1302
                                                          L+ +L+H S+ L  
Sbjct: 381  GDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEK 440

Query: 1303 QITEYVKSF----PKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKP 1358
            QI E+VK       KPG  +      KAPK LGD++ESI GA+ +D+  +    W++F+P
Sbjct: 441  QIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQP 500

Query: 1359 ILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQE 1418
            +L P+VTP+ L + P+REL E C      ++   +  G     E+ +   D + VG  Q 
Sbjct: 501  LLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFI---DGVQVGVAQN 557

Query: 1419 RSRKAAK---GKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQK 1475
              +K A+    + A   LK+ E+ E +  +   N G  G        ED  E  +  ++ 
Sbjct: 558  PQKKMAQKLAARNALAALKEKEIAESK--EKHINNGNAG--------EDQGENENGNKKN 607

Query: 1476 GTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFE-TTESK 1534
            G +                       P        R +L  +C    WPMP++    E  
Sbjct: 608  GHQ-----------------------PFT------RQTLNDICLRKNWPMPSYRCVKEGG 638

Query: 1535 SRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELE 1594
                  F  G+   T    +              EC G+P    K + DSAA+++L  L 
Sbjct: 639  PAHAKRFTFGVRVNTSDRGWTD------------ECIGEPMPSVKKAKDSAAVLLLELLN 686

Query: 1595 R 1595
            +
Sbjct: 687  K 687


>gi|356518185|ref|XP_003527762.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Glycine max]
          Length = 455

 Score =  255 bits (651), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 149/298 (50%), Positives = 184/298 (61%), Gaps = 57/298 (19%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEI 1254
            KTIADC EALIGAYYV GGL A+L +MKWLGI  +LE+S +D+ IT ASL + VP  ++I
Sbjct: 126  KTIADCVEALIGAYYVDGGLFASLNVMKWLGIGVELELSSLDEAITAASLSTCVPIESDI 185

Query: 1255 KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQ------------------------ 1287
              +E KI YEF+VK LL EAITH S +E     CY+                        
Sbjct: 186  ASLEKKIEYEFSVKGLLLEAITHLSEKELGIGCCYERLKFLGDSVLDLLITWHLYQSHTD 245

Query: 1288 --------------------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSG 1321
                                      NL++HL H S LL+SQI EYVK   +      S 
Sbjct: 246  IDPGVLADLRSASVNNDNFAQVAVRHNLHQHLLHSSGLLVSQILEYVKVISE--SDPRSL 303

Query: 1322 PSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELC 1381
            PS++APKALGD++ESIVG +LI TKL+LD+VW +F P+LSPIVTPDKLELPP REL ELC
Sbjct: 304  PSIRAPKALGDVVESIVGPILIGTKLSLDQVWNVFYPLLSPIVTPDKLELPPFRELNELC 363

Query: 1382 DSLGYF--VKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
            DSLG+F  VKENC   G  +H E+ +QL + LLV EG+  ++K AKG+AA  LLK LE
Sbjct: 364  DSLGHFVKVKENCEKMGSAMHVEVSVQLPNALLVREGKGPNKKTAKGEAAFHLLKDLE 421



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 63/103 (61%), Gaps = 31/103 (30%)

Query: 31  AVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN 90
           +++ P S+TN     PR YQ++V+EVA+RRNTIAVL+TG+GKT+ AVML+K         
Sbjct: 36  SLESPCSNTN-----PRGYQIEVYEVARRRNTIAVLDTGSGKTLNAVMLMK--------- 81

Query: 91  GFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEW 133
                            +Q+  ++  TDF+VEEYYGAKGVD W
Sbjct: 82  -----------------EQFKNMKFLTDFQVEEYYGAKGVDTW 107



 Score = 43.9 bits (102), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 11/85 (12%)

Query: 1061 LILEALTTL-------GCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRS 1113
            L+LEA+T L       GCC     ERL+ LGDSVL   ++ HL+ ++     G L+  RS
Sbjct: 201  LLLEAITHLSEKELGIGCC----YERLKFLGDSVLDLLITWHLYQSHTDIDPGVLADLRS 256

Query: 1114 WAVCNSTLHKLGTDRKLQGYIRDSA 1138
             +V N    ++     L  ++  S+
Sbjct: 257  ASVNNDNFAQVAVRHNLHQHLLHSS 281


>gi|407923675|gb|EKG16741.1| Ribonuclease III [Macrophomina phaseolina MS6]
          Length = 1533

 Score =  255 bits (651), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 192/647 (29%), Positives = 319/647 (49%), Gaps = 83/647 (12%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD-IAQAIKSNGFKKLIIFLAPTVH 104
           PR YQL++FE AK+ N IAVL+TG+GKT+IAV+L+K  I + ++     K          
Sbjct: 109 PREYQLELFERAKQENVIAVLDTGSGKTLIAVLLLKHVIEKELEDRALGK---------- 158

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
                    R+    +VE + GA   D W  Q W K   +N V+V T ++L   L  +F+
Sbjct: 159 -------TPRISFFLKVERFCGAMQCDLWSKQTWAKHFIQNMVIVCTAEVLAQCLMHSFI 211

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN--KPKVFGMTASPVVRKGVSSAMDC 222
           +++ +  +V DE HHA   H Y KI+ ++Y  +++  +PKVFGMTASPV      + +D 
Sbjct: 212 NMEQINLLVFDEAHHAKKGHSYAKIISDYYIPTEDSKRPKVFGMTASPV-----DAKVDV 266

Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD 282
               S+LE  L  ++ T  +   +   +    E    Y       + L+   E +     
Sbjct: 267 VQAASDLEKFLQCRIATTANPDLLRKTISRPHEEVVEY-------APLQTPFETT----- 314

Query: 283 ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILY---CLDELGLICA----YEAVKI 335
                        YK+M DK + +R     +HA          ELG  C+    + A++ 
Sbjct: 315 ------------LYKEMRDKFRDVRA----FHALFQSSKEATSELGPWCSDMYWFFALQE 358

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
              K L+++EE   +R    +    L+E +    + L  A KI  +  F   +   L Y+
Sbjct: 359 EEAKNLESREEQAFHRDKKRKPISSLDEEM----AKLREASKIVQNHPFGEPRPT-LTYL 413

Query: 396 STKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKV--PFLTHLTVAYLTGST 452
           S+K+ EL    L  F + T   CI+FV+R   A+++ +    +  P+L       + G++
Sbjct: 414 SSKVLELHTWLLRYFERQTNSRCIVFVQRRHTARILHQVFASIGGPYLKS---GMIIGNS 470

Query: 453 TSVDALTPKVQKEVLE--SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510
           +    L    +++V+    F+ G++N LFAT V EEG+ +PNC+ VIRFDL KT+  Y+Q
Sbjct: 471 SRASGLNISFREQVMTLLRFKKGELNCLFATSVAEEGLDIPNCNIVIRFDLYKTMIQYVQ 530

Query: 511 SRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKA------- 563
           SRGRAR  NS+++ M+E GN+  R  + +  ++ER + +   S  PE   LK        
Sbjct: 531 SRGRARHKNSRYLHMVEEGNISHRQTVLEARQAERLMREFCESL-PENRLLKGHGADLDD 589

Query: 564 CTYVKT--KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECE 621
            T+ +   ++Y   ST A +T D+S+ ++  +   LP     +  P++   S    + CE
Sbjct: 590 LTFEREFFRTYTEPSTRAKLTYDNSLVILAHFTAALPCKGDVSSDPLYIMSSERGEFLCE 649

Query: 622 LTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
           + LP N+P  +  G  + +K ++K+    E C +L +   L+++LLP
Sbjct: 650 VILPENSPVPSARGRPASSKAVAKRSAAFELCIRLREKDYLDENLLP 696



 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 115/487 (23%), Positives = 175/487 (35%), Gaps = 138/487 (28%)

Query: 963  GQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVV 1022
            GQP++  +Q  +  N+L       G  +              V++ PE L    +  + V
Sbjct: 944  GQPVVEARQVQHRRNMLAEPERQEGDFRSK------------VYLCPEPLKISALRPAAV 991

Query: 1023 KSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGC--------CES 1074
             S+Y+LP+V+ R E  ++A +      C      I   L LEA+T             ++
Sbjct: 992  ASIYVLPAVIHRTEQYLIALEA-----CQLLGLDIAPDLALEAVTKDSDNTEKHNEEAQN 1046

Query: 1075 F------SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDR 1128
            F      + ERLE +GD  LK   S  LF   P  +E     +R   +CN  L       
Sbjct: 1047 FRRGMGNNYERLEFMGDCFLKMGTSIALFSQNPDDNEFDFHVKRMCLICNQNLFDTAKRI 1106

Query: 1129 KLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMG 1188
            +L  Y+R  AF  R W   G L +               L+GK   +    V      M 
Sbjct: 1107 ELTKYVRSMAFSRRTWYPEG-LKM---------------LEGKGHKKTGDEV------MK 1144

Query: 1189 HRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITR-----AS 1243
            H  +  KT+AD  EALIGA Y+           KWL  + D  V  V   ++      AS
Sbjct: 1145 HS-LSDKTVADVCEALIGAAYLTHNTPG-----KWLPENWDNAVRAVAALVSSENHAMAS 1198

Query: 1244 LRSY---------------VPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY---- 1284
               Y                 +I+ +K  E +  Y F    LL+ A  H S    Y    
Sbjct: 1199 WSEYFSAYKKPSYLDAEATAAQIDLVKQAEKEHPYRFRSAKLLRSAFMHPSYPFNYEKVP 1258

Query: 1285 CYQNL--------------------------------------------------YKHLQ 1294
             YQ L                                                  +KHL+
Sbjct: 1259 SYQRLEFLGDSLIDTACITWLIYKFPDKDPQWLTEHKMAMVSNKFLGAVCVKLGFHKHLK 1318

Query: 1295 HCSTLLLSQITEYVKSFPKPGETT----DSGPSMKA-PKALGDLLESIVGAVLIDTKLNL 1349
            +  + +  QI +YV    +    +    D   ++K+ PK L D++E+ VGA+ +D++ N 
Sbjct: 1319 YSYSQMEYQIRDYVTELREAERESKGARDYWTTVKSPPKCLPDIVEAYVGALFVDSEYNF 1378

Query: 1350 DEVWRIF 1356
             +V   F
Sbjct: 1379 AKVEMFF 1385


>gi|410928196|ref|XP_003977487.1| PREDICTED: endoribonuclease Dicer-like [Takifugu rubripes]
          Length = 1883

 Score =  255 bits (651), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 219/725 (30%), Positives = 341/725 (47%), Gaps = 88/725 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L +G+GKT IAV+L K+++  I+       K  +FL  
Sbjct: 32  YTPRKYQVELLEAALEHNTIVCLNSGSGKTFIAVLLTKELSHQIRGCYREAAKRTVFLVN 91

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           T   V +Q   +R H+D +V EY   + +  W  Q W +E+ +N VLVMT  I L  L++
Sbjct: 92  TAASVAEQAAAVRTHSDLQVGEYSDLEKMT-WTDQRWSQEMTENQVLVMTCHIFLYILKR 150

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
             L L  +  +V D+CH A  +HPY +IMK ++    N P++ G+TAS  +  G     +
Sbjct: 151 QILLLSKINLVVFDDCHLAIADHPYCEIMK-YFEGVTNSPRILGLTAS--ILNGKCDPSE 207

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE---SCRFY-DQSKFCGSDLKGKLEVS 277
            E +I  LE TL S   T  D   ++ +    +E    C  Y D+S  C S L+ +L   
Sbjct: 208 LEEKIQNLERTLKSNAETATDLVVLDRYASQPREMVLDCGPYVDKSGLC-SRLQAEL--- 263

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC- 336
               D +L  L    + C    D     + KQ+    A  L  L  LG  CA +A  I  
Sbjct: 264 ----DEALRFLGDCNI-CVTREDHNPTFISKQVL---ADCLAVLQVLGPWCADKAAGIMV 315

Query: 337 --LEKVLKAQEE--------------------CE-IYRQSSLQCKYFLEEVLH---VIGS 370
             L+K +K ++E                    CE  +  +SL  K+   +VL    ++  
Sbjct: 316 RELQKYIKHEQEELSRKFLLFTDTILRKVHALCEEHFSPTSLDLKFVTPKVLRLLEILRE 375

Query: 371 ALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKS-----------TQVLC-I 418
             P   + F    +  ++  D  Y+S    E                      T +LC I
Sbjct: 376 YKPFERQQFESVEWYNNRNQD-NYVSWSDSEDEDEDEDVEAKERPEANFPSPFTNILCGI 434

Query: 419 IFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKEVL 467
           IFVER   A V+ R +K+     P L +++  ++TG +     L  K        Q+EVL
Sbjct: 435 IFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKYQLRNKQMEVEFRKQEEVL 494

Query: 468 ESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE 527
             FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++ +
Sbjct: 495 RKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIMLAD 554

Query: 528 RGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIV-------ESTGAS 580
               K   +     ++   +     S+  E    +    V    YI+       E  G  
Sbjct: 555 SERTKVFKEDLSTYKAIEKILRNKCSKSVEVSEFEV-EQVFDDDYIIPPYVLRSEDGGPR 613

Query: 581 VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQTIV-GPTS 638
           VT ++++  I+RYC  LPSD +    P  K    +   ++  L LP N+P +  V GP  
Sbjct: 614 VTVNTAIGHINRYCARLPSDPFTHLAPKCKTVEIQSGLFQSRLYLPINSPLRIPVKGPIM 673

Query: 639 RNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTTK 693
               L+++ V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+TK
Sbjct: 674 NCIRLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTK 733

Query: 694 RKELH 698
           R++ +
Sbjct: 734 RRQCY 738



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1262 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1321

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1150
            L++LG  + L   +  S FDP   W+ PG +
Sbjct: 1322 LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYI 1352



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 72/123 (58%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D++++L+ VW+I+ P++ P++      +P  P+REL+E+    
Sbjct: 1766 PKAMGDIFESLAGAIYMDSRMSLETVWQIYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1825

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1826 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1877

Query: 1441 KRI 1443
             ++
Sbjct: 1878 PQV 1880



 Score = 44.7 bits (104), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 944  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1003

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1004 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1062


>gi|345803797|ref|XP_868526.2| PREDICTED: endoribonuclease Dicer isoform 4 [Canis lupus
           familiaris]
          Length = 1923

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 216/729 (29%), Positives = 352/729 (48%), Gaps = 95/729 (13%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+   N   K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VLVMT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKEKWNQEFTKHQVLVMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY-DQSKFCG-SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C    D   F   S L G+L V   
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYGRLLV--- 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIV--ES 576
            +         +LK    +  I+R++ S +      D E        +     Y++  + 
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIEPVVDDDDVF---PPYVLRPDD 620

Query: 577 TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIV 634
            G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IV
Sbjct: 621 GGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIV 680

Query: 635 GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-A 689
           GP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  
Sbjct: 681 GPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRP 740

Query: 690 GTTKRKELH 698
           G+TKR++ +
Sbjct: 741 GSTKRRQCY 749



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  
Sbjct: 1288 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYM 1347

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1348 RSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1385



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1806 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1865

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1866 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1917

Query: 1441 KRI 1443
             ++
Sbjct: 1918 PQV 1920



 Score = 44.3 bits (103), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|413933739|gb|AFW68290.1| hypothetical protein ZEAMMB73_539070 [Zea mays]
          Length = 707

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 218/767 (28%), Positives = 336/767 (43%), Gaps = 147/767 (19%)

Query: 738  VLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGK 797
            VL ++ ++ +D  +   +L+ V   +  T+   G +HL+ +Q+  A+ FQ    + L   
Sbjct: 16   VLAVKCDMGSDFISNSFKLWGVQDYLSFTMRYVGIIHLNQEQVIAARRFQTTILSLLI-- 73

Query: 798  LFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVE 857
                S        ++K       SP  +YLLLP+         S +I+W  I   AS   
Sbjct: 74   ----SNDLSEVSNYIKNLLEMPASPGAVYLLLPVV--------SGKIDWRSIKFSASE-- 119

Query: 858  FIKEKSFLGAAQCNNNGGNSSPCRTSPCK-TGCHGKDVIHLANGSVDAKNLKDMVVLAIH 916
             + E + +    C             PCK TG     ++   +G+  +  L++ +V   H
Sbjct: 120  -MPEATNMDMRHC------------YPCKDTG-----IVQTKDGTFCSCMLRNSIVCTPH 161

Query: 917  TGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPH 976
             G  Y++   ++ ++  +     +D    ++  YF E+Y + L    Q LL  ++     
Sbjct: 162  NGMFYAVCGFLDLNA--NSLLHRSDGSFLSYKTYFKERYNLDLRCEDQALLEARKLVEVR 219

Query: 977  NLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVV--KSLYLLPSVMQR 1034
            N L   N      +  KS          V +PPEL + V  P+S +  +S   +PS+M R
Sbjct: 220  NFLHKCNYKKEKERSGKSV---------VELPPELCIVVMSPMSAITLRSFTFIPSIMYR 270

Query: 1035 LESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSC 1094
            ++ ++L+  L+ ++    + F IP+  ILEALTT  C E FS E LE LGDS LKY  + 
Sbjct: 271  IQCMLLSMNLKMQLGPSMQQFDIPALKILEALTTKNCQEEFSQESLETLGDSFLKYITTQ 330

Query: 1095 HLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRP 1154
            H F+ Y  +HEG L+  +   + N+ L +L     L GYIR  AF+P+ W+ PG      
Sbjct: 331  HFFVKYKHQHEGMLTKMKKNVISNAALCQLACSNNLVGYIRSEAFNPKTWIVPG------ 384

Query: 1155 VPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL 1214
                 G D                      CD   R + SK IAD  EALIGAY    G 
Sbjct: 385  ----VGYDI---------------------CDRSLRKLKSKRIADSVEALIGAYLSTAGE 419

Query: 1215 IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEA 1274
             AA   +K LG+D +     ++  IT  +          +K +E  + Y F    LL EA
Sbjct: 420  QAAYIFLKSLGMDIEFHKMPIERVITIKA-----EEFINVKSLELLLDYSFNDPSLLMEA 474

Query: 1275 ITHASVQ-------------------------EFY----------------------CYQ 1287
            +TH S Q                          FY                      CY 
Sbjct: 475  LTHGSYQIAGTTPCYQRLEFLGDAVLDHIFTDYFYHQYPECTPELLTDLRSASVNNSCYA 534

Query: 1288 N------LYKHLQHCSTLLLSQITEYV----KSFPKPGETTDSGPSMKAPKALGDLLESI 1337
            +      L+KH+ H S+ L  ++ +Y+    +SF  P    ++G S+  PK LGD++ESI
Sbjct: 535  HAAVKAGLHKHVLHSSSALHKRMADYLDKFEQSFSGPSHGWEAGISL--PKVLGDVVESI 592

Query: 1338 VGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGE 1397
             GA+ ID K +   VWR  K IL P+VTPD L+  P++EL E CDS GY ++   T    
Sbjct: 593  AGAIYIDAKHDKGVVWRSMKRILEPLVTPDTLQNDPVKELQEFCDSKGYTLEYTVTRDNG 652

Query: 1398 M--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKR 1442
            +  V AE+R +         G   S+  AK  AAS +L+ L+  + +
Sbjct: 653  VSSVVAEVRTEGTTYKATRTG--FSKLDAKKLAASSVLRDLKAADTK 697


>gi|449543396|gb|EMD34372.1| hypothetical protein CERSUDRAFT_55073 [Ceriporiopsis subvermispora
           B]
          Length = 1702

 Score =  254 bits (649), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 198/671 (29%), Positives = 315/671 (46%), Gaps = 75/671 (11%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
             +PR YQ ++F  A+  N IA L+TG+GKT I+ +LI+ I+  ++  G  K+I+FL P 
Sbjct: 12  TLLPRRYQEEIFSRAQEGNVIAALDTGSGKTYISTLLIRWIS--VRDAGQGKIIVFLVPK 69

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V LV QQ D I  HT   V ++ GA  +D  D   W KE+   DVLVMT Q+ L+ L   
Sbjct: 70  VALVDQQGDFIAKHTPLRVSKFCGATAIDMADRPGWLKELENVDVLVMTAQLFLNILTHG 129

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMD 221
              LD V  +VIDECHH   NH Y  IM+E++   +  +PK+FGMTASP     V +  D
Sbjct: 130 HWGLDKVSLMVIDECHHTRKNHAYNGIMREYFQLPTRKRPKIFGMTASP-----VWNPRD 184

Query: 222 CEGQISELESTLDSQVFTIEDKT-EMEVFVPSAKE----------------SCRFYDQ-- 262
            +  +  LE  LD++V  +     E++   P  KE                +C  +++  
Sbjct: 185 AQESLLTLERNLDAKVMAVRQHVDELKAHAPKPKEWVHEYPPSPEVYLEYPTCTLWERLS 244

Query: 263 SKFCGSDLKGKLEVSWSKFDASLSKL--QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYC 320
           +     D+   +E   ++++ +L  L   G+ L  Y D+  +   L +Q  + +      
Sbjct: 245 AITIPPDVDIPVEKIRARYEVTLQSLGPYGADLFLYTDLRQRIAQLIEQTMEGN------ 298

Query: 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
           LD L +   Y              ++ ++Y   +      L   +  +   L    ++F 
Sbjct: 299 LDTLAIKQYY--------------QDGDVYMAPAF-ADVLLPPQVQELEVILDDFRELFE 343

Query: 381 DFGFD--YSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438
           D          V L + S K+  L+ +      ST    IIFVE+   A  + + + +VP
Sbjct: 344 DSANPDVVPVTVHLKWCSPKVRILIDILFDQYTST-FQGIIFVEQRHVAACLAKMLPRVP 402

Query: 439 FLTHLT-VAYLTGSTTSVD-------ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
            L+HL   A L G  T           +  + Q++V++ FR  ++NLL AT V EEG+  
Sbjct: 403 QLSHLIRSAQLIGHGTGNSMYKIRGKGMAVRNQQDVVKLFREKQINLLVATSVAEEGLDF 462

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDT 550
           P C  VIRFD  + +  Y+QSRGRAR   S FI+M+E+G+     +      SE  +   
Sbjct: 463 PACDLVIRFDPLQHMVGYLQSRGRARHQTSTFIIMVEQGHEAHIARYRAFSESEPQIRQA 522

Query: 551 ALSRD------------PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLP 598
             +R+             E   +      + + ++V STGA +T  S+  L+H+ C ++P
Sbjct: 523 YQTREEPRNVSDLSEEVEEGEIIDPQDVAERERFVVPSTGAVLTYTSASGLLHQLCALVP 582

Query: 599 SDKYYTPKPIFKYKSA-EEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLH 657
            D+ +TP  + KY+          L+LP         GP  R+K  +K+     A + LH
Sbjct: 583 RDR-FTPVALPKYEGDFISTIRLPLSLPLPPEHLVYTGPEKRSKKEAKRAAAFLAVKNLH 641

Query: 658 QVGALNDHLLP 668
            +  ++D+LLP
Sbjct: 642 VLNVIDDYLLP 652



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 126/301 (41%), Gaps = 40/301 (13%)

Query: 1021 VVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERL 1080
            + ++ ++LP +  RL  +  A   R E+        I   L+++ALT       F+ + L
Sbjct: 921  IFRTFHVLPELCHRLTDVWRARTARAELGLPP----IADDLMVQALTLPAAAAGFNNQLL 976

Query: 1081 ELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFD 1140
            E LGD+VLK   + HLF  YP +HEGQL   R   VCN TL   G +  L+ Y+      
Sbjct: 977  ETLGDAVLKLGAAVHLFNKYPHRHEGQLDMLRRTCVCNRTLLARGLEHGLEQYLTSETQH 1036

Query: 1141 PRRW--VAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIA 1198
             R W  +AP            G D    P D             +P     R    ++I 
Sbjct: 1037 IRAWRYIAPE-----------GHD----PSD------------PRPYRHAARSFPRRSIQ 1069

Query: 1199 DCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIE 1258
            DC EA +GA +  GG+  AL     LG+     +        R   +   P   E++++ 
Sbjct: 1070 DCMEATLGAAFATGGIQMALRAGTALGLSFGGPLPWTARYGGRLPAKDASPLFTELQEV- 1128

Query: 1259 SKIGYEFTVKFLLQEAITHASVQEFYCYQNL-YKHLQHCSTLLLSQITEYVKSFPKPGET 1317
              +G++F    LL EA+TH S   F  Y+   Y+ L+     L+  +      F  P  T
Sbjct: 1129 --LGHQFKHGQLLLEAVTHPS---FGSYETTSYQRLEFLGDALIDLVVMRYLYFKYPRAT 1183

Query: 1318 T 1318
            +
Sbjct: 1184 S 1184



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 1061 LILEALT--TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118
            L+LEA+T  + G  E+ S +RLE LGD+++   V  +L+  YP+   GQLS  RS AVC 
Sbjct: 1138 LLLEAVTHPSFGSYETTSYQRLEFLGDALIDLVVMRYLYFKYPRATSGQLSWARSRAVCA 1197

Query: 1119 STL 1121
            S L
Sbjct: 1198 SAL 1200


>gi|392596196|gb|EIW85519.1| P-loop containing nucleoside triphosphate hydrolase protein
           [Coniophora puteana RWD-64-598 SS2]
          Length = 1520

 Score =  254 bits (648), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 208/718 (28%), Positives = 329/718 (45%), Gaps = 112/718 (15%)

Query: 34  GPSSSTN----SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS 89
            P S+T     S + +PR YQ ++F  A+  N IA L+TG+GKT I+++LIK +   ++ 
Sbjct: 11  APDSTTTAAAVSESLLPRNYQEEIFRRAQEGNVIAALDTGSGKTFISILLIKWMV--LQE 68

Query: 90  NGFKKLIIFLAPTVHLVHQQYDVIRVHT--DFEVEEYYGAKGVDEWDSQCWQKEINKNDV 147
           +   K+I+FL P V LV QQ   I  HT   F V++++G+  +D  D   WQK    +DV
Sbjct: 69  HARDKVIVFLVPKVALVEQQASFISKHTPSSFRVKKFHGSLDLDLADRGNWQKSFEGSDV 128

Query: 148 LVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD-NKPKVFGM 206
           +VMT QI L+ L  +  S++ V  ++ DECHH   NH Y  +M+E++  S  ++PKVFGM
Sbjct: 129 VVMTAQIFLNILTHSHWSIEKVSLLIFDECHHTRKNHAYNGVMREYFTLSTVHRPKVFGM 188

Query: 207 TASPVVRKGVSSAMDCEGQISELESTLDSQVFTI-EDKTEMEVFVPSAKESCRFYDQSKF 265
           TASP+      +  D +G +  LE  L++ V  + E   E+    P   E  + Y     
Sbjct: 189 TASPIW-----NPKDAQGSLLTLEKNLNATVIAVREHLAELLEHSPRPLEIIKEYVPPPD 243

Query: 266 CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELG 325
               LK  L    S F    ++   +QL  +  +  ++   R  L        YC D   
Sbjct: 244 NYIYLKPSLWDCISVF----AQGDTAQLISWDKLKMRYFVTRNTLGP------YCAD--- 290

Query: 326 LICAYEAVKICLEKVLKAQEECEIY------RQSSLQCKYFLEEV------------LHV 367
            +  Y  +K  +      QE  EIY      R   L+   F  +V            L  
Sbjct: 291 -LNLYHDIKAKVR-----QEVEEIYDTQLSQRPIDLEDPAFAMDVDDGTPDNFEQDFLDR 344

Query: 368 IGSALPLADKIFLDFGFDYSKA----------------------VDLGYISTKLHELLQL 405
           I   L   D I  +F   + +                       + L + + K+  L+ +
Sbjct: 345 IPDDLKHIDAIVSEFTHYFDRGSTSPSASPSPSASTPPSEIPITIPLAWCAPKVKALVDV 404

Query: 406 FLSFGKST--QVLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTG------------ 450
            L    ++      I+FVE+   A  + + + ++P L  H+  A L G            
Sbjct: 405 LLEHHSASPGSFHGIVFVEQRHVAMCLAKILPRIPELREHIRCAELVGHGTGHQHKKNQP 464

Query: 451 STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510
            T     +    Q++++ SFR GK+NLL AT V EEG+  P C  V+RFD    +  Y+Q
Sbjct: 465 PTAQARGMGLARQQDIVRSFREGKLNLLIATSVAEEGLDFPACDIVVRFDPVHHMVGYVQ 524

Query: 511 SRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRD--PEACFLKACTYVK 568
           SRGRAR   S F++M++ G    R +  ++  SE  +     SR+  P+     +    +
Sbjct: 525 SRGRARTKTSAFVIMVQAGYDTHRERYRNLSESEPELKKVYQSREQLPQPEPEPSSESEE 584

Query: 569 T-------------KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE 615
                         + Y+V STGA++T  S++ L++  C +LP D+Y  P P  KY    
Sbjct: 585 GEVEEEDPADIAVRERYVVPSTGAALTYGSAIGLVNYLCSLLPHDQYTEP-PTPKYFG-- 641

Query: 616 EAYECELTLPSNAPF----QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPS 669
             Y   L LP++ P     +   GP  R+K  +K+ V   A ++LH++   +D+LLPS
Sbjct: 642 -DYAATLDLPASLPLPLDKRRFRGPIRRSKREAKRAVAFMAVKELHKLNVFDDYLLPS 698



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 20/266 (7%)

Query: 1015 VDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCES 1074
            V  P  +  + +LLP V +RL  +  A   R E+        I   L++EA +      +
Sbjct: 963  VHFPPHIYNAFHLLPKVCRRLTDVYRAQAQRFELGLPP----IADDLLIEAASLPTTLHT 1018

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
            ++ +R E LGDSVLK  V+ H+   YP +HEGQLS  R  +V N TL     +  L+ ++
Sbjct: 1019 WNNQRFETLGDSVLKLGVTVHIMNKYPHRHEGQLSKLRQSSVSNRTLLARAKEIGLEIFL 1078

Query: 1135 RDSAFDPRRWVAPGQLSLRPV-PCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMG 1193
                   + W        R V P EC          G   +  +K     P     R   
Sbjct: 1079 NSETQSLQSW--------RYVHPSECTASASAALTAGTAESPSSKA----PARRAKREFP 1126

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1253
             +++ DC EA +GA +  GG+  AL     LG+    E+     C     +    P    
Sbjct: 1127 RRSLQDCMEATLGAAFYHGGMDMALRAGTALGLSFGGELPW---CARYGRVPDPSPAPPL 1183

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHAS 1279
             ++++S +GYEF    LL EA TH S
Sbjct: 1184 FEELQSGLGYEFHRGDLLVEAATHPS 1209



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 1061 LILEALT--TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118
            L++EA T  +       S +RLE LGD++L   V  +LF  YP+   GQLS  RS AVC 
Sbjct: 1200 LLVEAATHPSFATSAGASYQRLEFLGDALLDVVVMRYLFHKYPRATSGQLSVARSRAVCG 1259

Query: 1119 STLHKLGTDR 1128
             TL  +   R
Sbjct: 1260 PTLASVAVKR 1269


>gi|440907259|gb|ELR57423.1| Endoribonuclease Dicer [Bos grunniens mutus]
          Length = 1922

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 217/747 (29%), Positives = 356/747 (47%), Gaps = 97/747 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+   N   K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VLVMT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLVMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKHIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S ++++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML 563

Query: 526 LERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVE-ST 577
            +         +LK    +  I+R++ S +      D E        +     Y++    
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDDDDVF---PPYVLRPED 620

Query: 578 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVG 635
           G  VT ++++  ++RYC  LPSD +    P  + +   +  +   L LP N+P + +IVG
Sbjct: 621 GPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVG 680

Query: 636 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AG 690
           P      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G
Sbjct: 681 PPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPG 740

Query: 691 TTKRKELH-GTTP--IRALSGRWGEKC 714
           +TKR++ +    P  +R    R G+ C
Sbjct: 741 STKRRQCYPKAIPECLRESYPRPGQPC 767



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  
Sbjct: 1287 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYM 1346

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1347 RSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1805 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1864

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1865 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1916

Query: 1441 KRI 1443
             ++
Sbjct: 1917 PQV 1919



 Score = 44.3 bits (103), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 954  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1013

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1014 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1072


>gi|121713724|ref|XP_001274473.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
 gi|119402626|gb|EAW13047.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
          Length = 1552

 Score =  253 bits (647), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 189/662 (28%), Positives = 323/662 (48%), Gaps = 83/662 (12%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA---IKSNGF-KKLIIFLAP 101
           PR YQ+++FE AK +NTIAVL+TG+GKT+IAV+L++ + Q     ++NG   ++  FL  
Sbjct: 123 PREYQIELFERAKAQNTIAVLDTGSGKTLIAVLLLRHVLQNELNDRANGKPHRVSFFLVD 182

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V L +QQ  V+R + D  V  ++GA G D WD Q W++ + +N V+V T +IL   L  
Sbjct: 183 SVTLAYQQAAVLRNNIDQNVAHFFGAMGTDLWDRQVWEEHLQQNMVIVCTAEILNQCLLN 242

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSA 219
           + + ++ +  ++ DE HH   +HPY +I+++ Y K+    +P++FGMTASP+  KG    
Sbjct: 243 SHVRMNQINLLIFDEAHHTKKDHPYARIIRDSYFKASPPQRPRIFGMTASPIDTKG---- 298

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
            D     + LE+ LDS++ T    T +   V    E    YD           +LE   S
Sbjct: 299 -DIIAAATRLETLLDSRIATTSKITLLRQVVSRPIEKVWAYD-----------RLE---S 343

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339
            F  +L KL  ++    K ++   +              Y   ELG  C+  A    L  
Sbjct: 344 PFKTNLHKLMENRFGNVKALEGVFRF-----------AWYASSELGRWCSDRAWLYALAD 392

Query: 340 VLKAQEECEIYR-----QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGY 394
            +  + E  + +      ++ +     +E+  +  ++  +    F D  F        G 
Sbjct: 393 DVLPKLEGHVNKLAESTAAATERDMAFKEITLIKEASNIVKAHTFNDPEFP-------GE 445

Query: 395 ISTKLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERF--VKKVPFLT-HLTVAYLT 449
           +S K+  LLQ  LS  F  + +  CIIF ++   AK +     +  +P L   + +   +
Sbjct: 446 LSPKV-RLLQTELSKHFSHAPETKCIIFTQKRYTAKTLHELFTILSIPHLRPGVLIGVRS 504

Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
           G    ++ +T + Q   L  FR G++N LFAT V EEG+ +P+C+ V+RFDL  T+  Y+
Sbjct: 505 GDIGGMN-ITFRQQFLALVKFRKGEINCLFATSVAEEGLDIPDCNLVVRFDLYHTLIQYV 563

Query: 510 QSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTY--- 566
           QSRGRAR ++S +  M+E+ N     +L ++  +E+++ +   +  PE   L    +   
Sbjct: 564 QSRGRARHYHSTYASMVEKDNSDHEARLREVREAEKTMQNFCETL-PEDRILHGNDHDLD 622

Query: 567 ------VKTKSYIVESTGASVTTDSSVNLIHRYCEML------------------PSDKY 602
                    +++ V+STGA +T  S++ ++ RY   L                    +K 
Sbjct: 623 SLLQHEEGRRTFTVKSTGARLTYHSAIAILARYASSLVRSSNHALMASYIDNTWKQYEKE 682

Query: 603 YTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGAL 662
            TP+  +  +S    Y CE+ LP  +P + + G  +  K+++KQ    + C  L +   L
Sbjct: 683 TTPQATYVVQSVGNTYVCEVILPEKSPIRGLTGSPAIRKSIAKQSAAFDTCLLLRRHKLL 742

Query: 663 ND 664
           +D
Sbjct: 743 DD 744



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 119/496 (23%), Positives = 177/496 (35%), Gaps = 144/496 (29%)

Query: 961  HPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPIS 1020
            H  QP+L+ +      NLL             K     KK Q    +  E L    +P S
Sbjct: 991  HWDQPVLQAELVRLRRNLL------------DKLTTEEKKIQTECFICAEPLKISAIPPS 1038

Query: 1021 VVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT------------- 1067
            +  +    P+++ RL+S +++ +      C   +  I S   LEA+T             
Sbjct: 1039 IASTCLAFPAIITRLDSYLISIEA-----CDELDLVIRSDYALEAVTKDSDNTEEHRGQQ 1093

Query: 1068 ---TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL 1124
                 G  +++  ERLE LGD  LK A S  LF   P   E      R   +CN  L   
Sbjct: 1094 IHFQRGMGKNY--ERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNT 1151

Query: 1125 GTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP 1184
               R++  YIR  +F    W  P  L+L               L GK  ++       K 
Sbjct: 1152 AKKRQIYRYIRSRSFSRHVWY-PDGLTL---------------LQGKDHSK-------KM 1188

Query: 1185 CDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASL 1244
                   +G KTIAD  EALIGA  + GG      M    G+ A   VS+  D  + A  
Sbjct: 1189 LSQAKHALGEKTIADVCEALIGACLLSGGPEHRFDM----GVKA---VSVFVDSPSHAVS 1241

Query: 1245 RS------YVPRINEIK-----------DIESKIGYEFTVKFLLQEAITHASVQEFY--- 1284
            R       Y P   +++            +E K+GY F    LL  A+TH S    +   
Sbjct: 1242 RWKEYIGLYKPPNYQVRKAEGAETNLALQVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFR 1301

Query: 1285 --CYQNL--------------------------------------------------YKH 1292
              CYQ L                                                  +KH
Sbjct: 1302 VPCYQRLEFLGDSLLDMVCVEDLFHRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGFHKH 1361

Query: 1293 LQHCSTLLLSQITEYVKSFPKPGETTDSGP------SMKAPKALGDLLESIVGAVLIDTK 1346
            ++  S  L +QIT YV+   +  E    G       +   PK L D++E+ +GA+ +D+ 
Sbjct: 1362 IKAFSNPLQAQITYYVEEI-ETAEAESEGAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSD 1420

Query: 1347 LNLDEVWRIFKPILSP 1362
             + + +   F+  + P
Sbjct: 1421 FSFEVIEAFFQAQIKP 1436


>gi|296475171|tpg|DAA17286.1| TPA: endoribonuclease Dicer [Bos taurus]
          Length = 1922

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 216/747 (28%), Positives = 356/747 (47%), Gaps = 97/747 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+   N   K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKHIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S ++++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML 563

Query: 526 LERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVE-ST 577
            +         +LK    +  I+R++ S +      D E        +     Y++    
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDDDDVF---PPYVLRPED 620

Query: 578 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVG 635
           G  VT ++++  ++RYC  LPSD +    P  + +   +  +   L LP N+P + +IVG
Sbjct: 621 GPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVG 680

Query: 636 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AG 690
           P      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G
Sbjct: 681 PPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPG 740

Query: 691 TTKRKELH-GTTP--IRALSGRWGEKC 714
           +TKR++ +    P  +R    R G+ C
Sbjct: 741 STKRRQCYPKAIPECLRESYPRPGQPC 767



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 72/123 (58%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+   +
Sbjct: 1806 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPEI 1865

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1866 TKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1917

Query: 1441 KRI 1443
             ++
Sbjct: 1918 PQV 1920



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAV-SCHLFLTYPKKHEGQLSA 1110
            SR       LIL+ALT     + F++ERLE+LGDS LK+A+ +  L       HEG+LS 
Sbjct: 1287 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSY 1346

Query: 1111 RRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
             RS  V N  L++LG  + L   +  S FDP
Sbjct: 1347 MRSKKVSNCNLYRLGKKKGLPSRMVVSIFDP 1377



 Score = 43.9 bits (102), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 954  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1013

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1014 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1072


>gi|42733596|ref|NP_976235.1| endoribonuclease Dicer [Bos taurus]
 gi|257051053|sp|Q6TUI4.3|DICER_BOVIN RecName: Full=Endoribonuclease Dicer
 gi|38679195|gb|AAR26432.1| dicer [Bos taurus]
          Length = 1923

 Score =  253 bits (646), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 216/747 (28%), Positives = 356/747 (47%), Gaps = 97/747 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+   N   K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKHIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S ++++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML 563

Query: 526 LERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVE-ST 577
            +         +LK    +  I+R++ S +      D E        +     Y++    
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDDDDVF---PPYVLRPED 620

Query: 578 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVG 635
           G  VT ++++  ++RYC  LPSD +    P  + +   +  +   L LP N+P + +IVG
Sbjct: 621 GPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVG 680

Query: 636 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AG 690
           P      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G
Sbjct: 681 PPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPG 740

Query: 691 TTKRKELH-GTTP--IRALSGRWGEKC 714
           +TKR++ +    P  +R    R G+ C
Sbjct: 741 STKRRQCYPKAIPECLRESYPRPGQPC 767



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 72/123 (58%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+   +
Sbjct: 1806 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPEI 1865

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1866 TKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1917

Query: 1441 KRI 1443
             ++
Sbjct: 1918 PQV 1920



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAV-SCHLFLTYPKKHEGQLSA 1110
            SR       LIL+ALT     + F++ERLE+LGDS LK+A+ +  L       HEG+LS 
Sbjct: 1287 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSY 1346

Query: 1111 RRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
             RS  V N  L++LG  + L   +  S FDP
Sbjct: 1347 MRSKKVSNCNLYRLGKKKGLPSRMVVSIFDP 1377



 Score = 43.9 bits (102), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 954  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1013

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1014 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1072


>gi|402877099|ref|XP_003902280.1| PREDICTED: endoribonuclease Dicer isoform 1 [Papio anubis]
 gi|402877101|ref|XP_003902281.1| PREDICTED: endoribonuclease Dicer isoform 2 [Papio anubis]
 gi|402877103|ref|XP_003902282.1| PREDICTED: endoribonuclease Dicer isoform 3 [Papio anubis]
          Length = 1920

 Score =  253 bits (646), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 208/726 (28%), Positives = 344/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+   N   K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK         P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPACPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEA----CFLKACTYVKTKSYIV--ESTGA 579
            +   +K   +     ++   +     S+  +                  Y++  +  G 
Sbjct: 564 ADTDKMKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVVDDDDVFPPYVLRPDDGGP 623

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 693 KRKELH 698
           KR++ +
Sbjct: 744 KRRQCY 749



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            + S+    I   SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF T
Sbjct: 1273 MDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1332

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            YP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1333 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1382



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1803 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1862

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1863 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1914

Query: 1441 KRI 1443
             ++
Sbjct: 1915 PQV 1917



 Score = 44.3 bits (103), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|403274211|ref|XP_003928879.1| PREDICTED: endoribonuclease Dicer isoform 1 [Saimiri boliviensis
           boliviensis]
 gi|403274213|ref|XP_003928880.1| PREDICTED: endoribonuclease Dicer isoform 2 [Saimiri boliviensis
           boliviensis]
          Length = 1922

 Score =  253 bits (646), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 208/726 (28%), Positives = 345/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+   N   K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNGSWTKERWNQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPAEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEA----CFLKACTYVKTKSYIV--ESTGA 579
            +   +K   +     ++   +     S+  +                  Y++  +  G 
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVVDDDDIFPPYVLRPDDGGP 623

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 693 KRKELH 698
           KR++ +
Sbjct: 744 KRRQCY 749



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            + S+    I   SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF T
Sbjct: 1275 MDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1334

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            YP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1335 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1805 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1864

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1865 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1916

Query: 1441 KRI 1443
             ++
Sbjct: 1917 PQV 1919



 Score = 44.3 bits (103), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|383872414|ref|NP_001244801.1| endoribonuclease Dicer [Macaca mulatta]
 gi|380811118|gb|AFE77434.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
 gi|380811120|gb|AFE77435.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
 gi|380811122|gb|AFE77436.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
 gi|380811124|gb|AFE77437.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
 gi|383417045|gb|AFH31736.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
          Length = 1920

 Score =  253 bits (646), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 208/726 (28%), Positives = 344/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+   N   K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK         P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPACPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEA----CFLKACTYVKTKSYIV--ESTGA 579
            +   +K   +     ++   +     S+  +                  Y++  +  G 
Sbjct: 564 ADTDKMKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVVDDDDVFPPYVLRPDDGGP 623

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 693 KRKELH 698
           KR++ +
Sbjct: 744 KRRQCY 749



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            + S+    I   SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF T
Sbjct: 1273 MDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1332

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            YP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1333 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1382



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1803 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1862

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1863 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1914

Query: 1441 KRI 1443
             ++
Sbjct: 1915 PQV 1917



 Score = 44.3 bits (103), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|355778829|gb|EHH63865.1| hypothetical protein EGM_16920 [Macaca fascicularis]
          Length = 1910

 Score =  253 bits (645), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 208/726 (28%), Positives = 344/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+   N   K  +FL  
Sbjct: 32  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 91

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 92  SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKN 151

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK         P++ G+TAS  +  G     +
Sbjct: 152 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPACPRILGLTAS--ILNGKCDPEE 208

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 209 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 262

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 263 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 318

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 319 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 373

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 374 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 433

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 434 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 493

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 494 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 553

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEA----CFLKACTYVKTKSYIV--ESTGA 579
            +   +K   +     ++   +     S+  +                  Y++  +  G 
Sbjct: 554 ADTDKMKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVVDDDDVFPPYVLRPDDGGP 613

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 614 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 673

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 674 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 733

Query: 693 KRKELH 698
           KR++ +
Sbjct: 734 KRRQCY 739



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            + S+    I   SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF T
Sbjct: 1263 MDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1322

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            YP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1323 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1372



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1793 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1852

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1853 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1904

Query: 1441 KRI 1443
             ++
Sbjct: 1905 PQV 1907



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 945  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1004

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1005 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1063


>gi|296215835|ref|XP_002754306.1| PREDICTED: endoribonuclease Dicer isoform 3 [Callithrix jacchus]
          Length = 1922

 Score =  253 bits (645), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 208/726 (28%), Positives = 345/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+   N   K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNGSWTKERWNQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEA----CFLKACTYVKTKSYIV--ESTGA 579
            +   +K   +     ++   +     S+  +                  Y++  +  G 
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVVDDDDIFPPYVLRPDDGGP 623

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 693 KRKELH 698
           KR++ +
Sbjct: 744 KRRQCY 749



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            + S+    I   SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF T
Sbjct: 1275 MDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1334

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            YP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1335 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1805 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1864

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1865 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1916

Query: 1441 KRI 1443
             ++
Sbjct: 1917 PQV 1919



 Score = 44.3 bits (103), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|432936630|ref|XP_004082201.1| PREDICTED: endoribonuclease Dicer-like [Oryzias latipes]
          Length = 1890

 Score =  253 bits (645), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 210/723 (29%), Positives = 333/723 (46%), Gaps = 83/723 (11%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  +  +  +FLA 
Sbjct: 32  YTPRKYQVELLEAALEHNTIVCLNTGSGKTFIAVLLTKELSHQIRGSYQENARRTVFLAN 91

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
                 QQ   +R H+D  V EY   +    W  Q W +EI  N VLVMT  + L  L  
Sbjct: 92  ATSSAVQQAAAVRTHSDLHVGEYSDPQEATTWSRQRWSREIADNQVLVMTCHVFLHVLTN 151

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
             L L  +  +V D+CH A   HPY ++MK F   +    ++ G+TAS  +  G     +
Sbjct: 152 HILPLSKINLVVFDDCHLAITEHPYCEVMKLFEEHTCGS-RILGLTAS--ILNGKCDPSE 208

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE---SCRFYDQSKFCGSDLKGKLEVSW 278
            E +I  LE  L S   T  D   ++ +    +E    C  Y       S L+ +LE   
Sbjct: 209 LEQKIQNLERILKSSAETATDLVVLDRYACQPREVVLDCGPYMDKSGLSSRLQAELE--- 265

Query: 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC-- 336
                +L  L    ++  ++  D     ++ LSD     L  L  LG  CA +A  I   
Sbjct: 266 ----EALLFLNDCNISASREDRDPTFISKQILSD----CLAVLQVLGPWCADKAAGIMVR 317

Query: 337 -LEKVLKAQEE--------------------CE-IYRQSSLQCKYFLEEVLH---VIGSA 371
            L+K +K ++E                    CE  +  +SL  K+   +VL    ++   
Sbjct: 318 ELQKYIKHEQEELSRKFLLFTDTILRKVHALCEEHFSPASLDLKFVTPKVLRLLEILHEY 377

Query: 372 LPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKS-----------TQVLC-II 419
            P   + F    +  ++  D  Y+S    E                      T +LC II
Sbjct: 378 KPFERQQFESVEWYNNRNQD-NYVSWSDSEDEDEDEEVEAKERPETNFPSPFTNILCGII 436

Query: 420 FVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKEVLE 468
           FVER   A V+ R +K+     P L +++  ++TG +   +    K        Q+EVL 
Sbjct: 437 FVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQARNKQMEVEFRKQEEVLR 496

Query: 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528
            FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++ + 
Sbjct: 497 KFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIMLADS 556

Query: 529 GNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV--ESTGASVT 582
              +   +     ++   +     S+  E         V   +    Y++  E  G  VT
Sbjct: 557 ERTQAFQEDLTTYKAIEKILRNKCSKSVEVGEFDGEQVVDDDNILPPYVLRSEDGGPRVT 616

Query: 583 TDSSVNLIHRYCEMLPSDKYYTPKPIFK-YKSAEEAYECELTLPSNAPFQT-IVGPTSRN 640
            ++++  I+RYC  LPSD +    P  K  ++    ++  L LP N+P +  I GPT   
Sbjct: 617 VNTAIGHINRYCARLPSDPFTHLAPKCKTVETGNGRFQSTLYLPINSPLRVPIKGPTMHC 676

Query: 641 KNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTTKRK 695
             L+++ V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+TKR+
Sbjct: 677 ARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRR 736

Query: 696 ELH 698
           + +
Sbjct: 737 QCY 739



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1267 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1326

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            L++LG  + L   +  S FDP   W+ PG
Sbjct: 1327 LYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1355



 Score = 63.9 bits (154), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1773 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1832

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1833 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1884

Query: 1441 KRI 1443
             ++
Sbjct: 1885 PQV 1887



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 5/124 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 945  TPLSKFPSPEYETFAEYYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1004

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR + 
Sbjct: 1005 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQT 1064

Query: 1049 NCHS 1052
             C +
Sbjct: 1065 ACEA 1068


>gi|431839251|gb|ELK01178.1| Endoribonuclease Dicer [Pteropus alecto]
          Length = 1921

 Score =  252 bits (644), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 209/726 (28%), Positives = 346/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN--GFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +     K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDVSRLGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VLVMT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKEKWSQEFAKHQVLVMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG   D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFMDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFVSDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV--ESTGA 579
            +   +K   +     ++   +     S+  +    +    V        Y++  +  G 
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETEIEPVVDDDDVFPPYVLRPDDGGP 623

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 684 MSCTRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 693 KRKELH 698
           KR++ +
Sbjct: 744 KRRQCY 749



 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  
Sbjct: 1288 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYM 1347

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1348 RSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1385



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1804 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1863

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1864 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1915

Query: 1441 KRI 1443
             ++
Sbjct: 1916 PQV 1918



 Score = 44.3 bits (103), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|114654619|ref|XP_001154369.1| PREDICTED: endoribonuclease Dicer isoform 6 [Pan troglodytes]
 gi|410048689|ref|XP_003952618.1| PREDICTED: endoribonuclease Dicer [Pan troglodytes]
 gi|410219112|gb|JAA06775.1| dicer 1, ribonuclease type III [Pan troglodytes]
 gi|410256210|gb|JAA16072.1| dicer 1, ribonuclease type III [Pan troglodytes]
 gi|410256212|gb|JAA16073.1| dicer 1, ribonuclease type III [Pan troglodytes]
 gi|410306234|gb|JAA31717.1| dicer 1, ribonuclease type III [Pan troglodytes]
 gi|410306236|gb|JAA31718.1| dicer 1, ribonuclease type III [Pan troglodytes]
 gi|410351815|gb|JAA42511.1| dicer 1, ribonuclease type III [Pan troglodytes]
 gi|410351817|gb|JAA42512.1| dicer 1, ribonuclease type III [Pan troglodytes]
          Length = 1922

 Score =  252 bits (644), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 207/726 (28%), Positives = 346/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  +  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEA----CFLKACTYVKTKSYIV--ESTGA 579
            +   +K   +     ++   +     S+  +                  Y++  +  G 
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEIDIDPVMDDDDVFPPYVLRPDDGGP 623

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 693 KRKELH 698
           KR++ +
Sbjct: 744 KRRQCY 749



 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            + S+    I   SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF T
Sbjct: 1275 MDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1334

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            YP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1335 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1805 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1864

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1865 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1916

Query: 1441 KRI 1443
             ++
Sbjct: 1917 PQV 1919



 Score = 43.9 bits (102), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|426377909|ref|XP_004055696.1| PREDICTED: endoribonuclease Dicer isoform 1 [Gorilla gorilla
           gorilla]
 gi|426377911|ref|XP_004055697.1| PREDICTED: endoribonuclease Dicer isoform 2 [Gorilla gorilla
           gorilla]
 gi|426377913|ref|XP_004055698.1| PREDICTED: endoribonuclease Dicer isoform 3 [Gorilla gorilla
           gorilla]
          Length = 1922

 Score =  252 bits (643), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 207/726 (28%), Positives = 347/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  +  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV--ESTGA 579
            +   +K   +     ++   +     S+  +         +        Y++  +  G 
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLRPDDGGP 623

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 693 KRKELH 698
           KR++ +
Sbjct: 744 KRRQCY 749



 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            + S+    I   SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF T
Sbjct: 1275 MDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1334

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            YP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1335 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1805 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1864

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1865 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1916

Query: 1441 KRI 1443
             ++
Sbjct: 1917 PQV 1919



 Score = 44.3 bits (103), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|397525875|ref|XP_003832878.1| PREDICTED: endoribonuclease Dicer isoform 1 [Pan paniscus]
 gi|397525877|ref|XP_003832879.1| PREDICTED: endoribonuclease Dicer isoform 2 [Pan paniscus]
          Length = 1922

 Score =  252 bits (643), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 207/726 (28%), Positives = 347/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  +  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV--ESTGA 579
            +   +K   +     ++   +     S+  +         +        Y++  +  G 
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLRPDDGGP 623

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 693 KRKELH 698
           KR++ +
Sbjct: 744 KRRQCY 749



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            + S+    I   SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF T
Sbjct: 1275 IDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1334

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            YP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1335 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1805 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1864

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1865 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1916

Query: 1441 KRI 1443
             ++
Sbjct: 1917 PQV 1919



 Score = 44.3 bits (103), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|29294649|ref|NP_085124.2| endoribonuclease Dicer isoform 1 [Homo sapiens]
 gi|29294651|ref|NP_803187.1| endoribonuclease Dicer isoform 1 [Homo sapiens]
 gi|404312696|ref|NP_001258211.1| endoribonuclease Dicer isoform 1 [Homo sapiens]
 gi|257051056|sp|Q9UPY3.3|DICER_HUMAN RecName: Full=Endoribonuclease Dicer; AltName: Full=Helicase with
           RNase motif; Short=Helicase MOI
 gi|20521696|dbj|BAA76772.2| KIAA0928 protein [Homo sapiens]
 gi|119602002|gb|EAW81596.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Homo sapiens]
 gi|152012889|gb|AAI50288.1| Dicer 1, ribonuclease type III [Homo sapiens]
 gi|307685563|dbj|BAJ20712.1| dicer 1, ribonuclease type III [synthetic construct]
          Length = 1922

 Score =  252 bits (643), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 207/726 (28%), Positives = 347/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  +  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV--ESTGA 579
            +   +K   +     ++   +     S+  +         +        Y++  +  G 
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLRPDDGGP 623

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 693 KRKELH 698
           KR++ +
Sbjct: 744 KRRQCY 749



 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            + S+    I   SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF T
Sbjct: 1275 MDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1334

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            YP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1335 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1805 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1864

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1865 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1916

Query: 1441 KRI 1443
             ++
Sbjct: 1917 PQV 1919



 Score = 44.3 bits (103), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|119602001|gb|EAW81595.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Homo sapiens]
          Length = 1923

 Score =  252 bits (643), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 207/726 (28%), Positives = 347/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  +  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV--ESTGA 579
            +   +K   +     ++   +     S+  +         +        Y++  +  G 
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLRPDDGGP 623

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 693 KRKELH 698
           KR++ +
Sbjct: 744 KRRQCY 749



 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            + S+    I   SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF T
Sbjct: 1276 MDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1335

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            YP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1336 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1385



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1806 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1865

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1866 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1917

Query: 1441 KRI 1443
             ++
Sbjct: 1918 PQV 1920



 Score = 44.3 bits (103), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 956  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1015

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1016 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1074


>gi|21665773|emb|CAB38857.2| hypothetical helicase K12H4.8-like protein [Homo sapiens]
          Length = 1912

 Score =  252 bits (643), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 207/726 (28%), Positives = 347/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  +  K  +FL  
Sbjct: 32  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVN 91

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 92  SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKN 151

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 152 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 208

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 209 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 262

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 263 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 318

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 319 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 373

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 374 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 433

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 434 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 493

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 494 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 553

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV--ESTGA 579
            +   +K   +     ++   +     S+  +         +        Y++  +  G 
Sbjct: 554 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLRPDDGGP 613

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 614 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 673

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 674 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 733

Query: 693 KRKELH 698
           KR++ +
Sbjct: 734 KRRQCY 739



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            + S+    I   SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF T
Sbjct: 1265 MDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1324

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            YP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1325 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1374



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1795 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1854

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1855 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1906

Query: 1441 KRI 1443
             ++
Sbjct: 1907 PQV 1909



 Score = 44.3 bits (103), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 945  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1004

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1005 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1063


>gi|297695799|ref|XP_002825114.1| PREDICTED: endoribonuclease Dicer isoform 1 [Pongo abelii]
 gi|297695801|ref|XP_002825115.1| PREDICTED: endoribonuclease Dicer isoform 2 [Pongo abelii]
 gi|297695803|ref|XP_002825116.1| PREDICTED: endoribonuclease Dicer isoform 3 [Pongo abelii]
          Length = 1922

 Score =  252 bits (643), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 207/726 (28%), Positives = 347/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  +  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDDYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV--ESTGA 579
            +   +K   +     ++   +     S+  +         +        Y++  +  G 
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLRPDDGGP 623

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 693 KRKELH 698
           KR++ +
Sbjct: 744 KRRQCY 749



 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            + S+    I   SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF T
Sbjct: 1275 MDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1334

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            YP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1335 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384



 Score = 63.5 bits (153), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1805 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1864

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1865 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1916

Query: 1441 KRI 1443
             ++
Sbjct: 1917 PQV 1919



 Score = 44.3 bits (103), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|308237838|ref|NP_001184123.1| endoribonuclease Dicer [Sus scrofa]
 gi|307715909|gb|ADN88174.1| dicer [Sus scrofa]
          Length = 1915

 Score =  252 bits (643), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 213/729 (29%), Positives = 350/729 (48%), Gaps = 94/729 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+   N   K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VLVMT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKEKWNQEFTKHQVLVMTCSVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +L+L  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLALSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    +  +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNIAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI--GSALPLADKIFLDFGFDYSKAVDLG 393
            L+K +K ++E E++R+  L    FL +V H +  G   P A    LD  F   K + L 
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKV-HALCEGHFSPAA----LDLRFVTPKVIKLL 381

Query: 394 YISTKL--HELLQL-------------FLSFGKS-----------------------TQV 415
            I  K   +E  Q              ++S+  S                       T +
Sbjct: 382 EILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKPETNFPSPFTNI 441

Query: 416 LC-IIFVERIIAAKVVERFVKKV----PFLTHLTVA-YLTGSTTSVDALTPKV------- 462
           LC IIFVER   A V+ R +K+     P L +++ + ++TG     +    K        
Sbjct: 442 LCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSSNFITGHGIGKNQPRNKQMEAEFRK 501

Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
           Q+EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +
Sbjct: 502 QEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNY 561

Query: 523 ILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV--ES 576
           +++ +   +K   +     ++   +     S+  E+        V        Y++  + 
Sbjct: 562 VMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVESGETDLEPVVDDDDIFPPYVLRPDD 621

Query: 577 TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIV 634
            G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IV
Sbjct: 622 GGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIV 681

Query: 635 GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-A 689
           GP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  
Sbjct: 682 GPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRP 741

Query: 690 GTTKRKELH 698
           G+TKR++ +
Sbjct: 742 GSTKRRQCY 750



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1294 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1353

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            L++LG  + L   +  S FDP   W+ PG
Sbjct: 1354 LYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1382



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1798 PKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1857

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1858 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1909

Query: 1441 KRI 1443
             ++
Sbjct: 1910 PQV 1912



 Score = 44.3 bits (103), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 956  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1015

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1016 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1074


>gi|346970337|gb|EGY13789.1| RNase3 domain-containing protein [Verticillium dahliae VdLs.17]
          Length = 1563

 Score =  251 bits (642), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 228/780 (29%), Positives = 363/780 (46%), Gaps = 79/780 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA----IKSNGFKKLIIFLAP 101
           PR YQ+++FE AKR+N IAVL TG+GKT+IA +L++   +      ++   K++  FL  
Sbjct: 147 PREYQIELFERAKRKNIIAVLPTGSGKTLIAALLLRHTLEQETADRRAGKPKRIAFFLVE 206

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
            V L  QQ+ V+  + +F ++   G     +W  + W K  + N V+V T  IL   L +
Sbjct: 207 KVALALQQHAVLECNLEFPIDRVCGDMVRSDWIKESWMKRWDDNMVMVCTAAILQQCLAR 266

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY---HKSDNKPKVFGMTASPVVRKGVSS 218
           +F+ +D +  +V DE HHA GNHPY +I+K++Y      + +PK+FGMTASP     V +
Sbjct: 267 SFIRMDQINLLVFDEAHHAKGNHPYARIIKDYYITEPDKERRPKIFGMTASP-----VDA 321

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD-QSKFCGSDLK-GKLEV 276
             D +   ++LE  L S++ TIE+            +S  F   Q +    D K   LE 
Sbjct: 322 LTDVKIAAAQLEGLLHSEIATIEE------------DSVSFKQIQKEVVEQDCKYPALE- 368

Query: 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC 336
               F  +L K    Q+   K+     K L   L    +   +C+D    I   E     
Sbjct: 369 --PPFTTNLHKKIQEQVRYNKNF---AKALSNSLEMSSSLGSWCVDRFWQIFLTEET--- 420

Query: 337 LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSA--LPLADKIFLDFGFDYSKAVDLGY 394
           L ++     +  I+   + + +  +EEV ++I     LP+                 L  
Sbjct: 421 LARLAAQTAQDNIFADRAEKERVAIEEVRNIIKQHQFLPITKT--------------LQD 466

Query: 395 ISTKLHELL-QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL--THLTVAYLTG- 450
           +S+K+  LL QL L F   T   CIIFVE+   A ++   +  +P +   +L  A L G 
Sbjct: 467 LSSKVLCLLGQLELRFSAPTDHKCIIFVEKRNTAMILAHLL-SLPGIGPLYLKPAALVGN 525

Query: 451 -STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
            S  S  A++ K Q   +  FR G+ N L AT V EEG+ + +C+ VIRFDL  +V  YI
Sbjct: 526 PSDNSPLAMSYKEQVMTITKFRRGEYNCLLATSVAEEGIDIADCNIVIRFDLFNSVIQYI 585

Query: 510 QSRGRARQHNSQFILMLERGNLK------QRNKLFDIIR---SERSVTDTALSRDPEACF 560
           QS+GRAR  NS++I M E GN K      Q N    +IR   S        +  DPEA  
Sbjct: 586 QSKGRARHLNSEYICMAELGNGKHTRAKIQANYDLSLIRQFCSTLPEDRKIVGWDPEAAL 645

Query: 561 LKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLP-SDKYYTPKPIFKYKSAEEAYE 619
                    K +IV STGA +T   S+ ++  +   L  +D+  +P  +     +E  Y 
Sbjct: 646 HHGER--DHKFHIVPSTGAKLTWTGSLVVLSNFASSLQVNDETLSPSYMVSLIGSE--YI 701

Query: 620 CELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLI 679
           CE+ LPS +P  ++ G   +NK  ++     E C KL + G ++ HL P+        L 
Sbjct: 702 CEVQLPSKSPILSVSGTLQKNKAEARCSAAFEMCMKLIKGGFISSHLQPTFTR----KLP 757

Query: 680 SKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVL 739
           + +N  L  A ++K++E +       +  R G    + L   K     ++     S  + 
Sbjct: 758 AMRNARL--AISSKKRERYNMRVKPEVWSRRGPASSLFLTVLKLRTPGALNRP--SQPLA 813

Query: 740 LIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLF 799
           L+  E   ++    L      +++   VS +  +HLD  ++   + F    F  +F K++
Sbjct: 814 LLTREALPELPGVPLFFGNCGRSIAEVVSVAKPMHLDEVRLDSLRVFTLRIFKDVFSKVY 873



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 96/441 (21%), Positives = 158/441 (35%), Gaps = 129/441 (29%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTT-------- 1068
            +P+ VV   Y  P+++ R+ES M+A        C   N  +   L LEA+T         
Sbjct: 1043 LPVEVVAMAYNFPAIIHRIESNMIALDA-----CRMLNLRVRPDLALEAMTKDSSNSEEH 1097

Query: 1069 ------LGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
                         + ERLE LGD  LK A +  LF   P  +E +    R   +CN  L 
Sbjct: 1098 DQEKIDFQAGMGNNYERLEFLGDCFLKMATTIALFTRIPDSNEFECHVERMLLICNQNLF 1157

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
             +   + LQ YIR   FD R W                            + Q  K   G
Sbjct: 1158 NVALKKNLQEYIRSKQFDRRSW----------------------------YPQGLKQKAG 1189

Query: 1183 KP--CDMGHRWMGSKTIADCAEALIGAYYVG----GGLIAALYMMKWLGIDADLEVSLVD 1236
            K       H  +  K+IAD  EA+IGA Y+     G    A+  +  +  + + ++   +
Sbjct: 1190 KAQGAQNSHS-LADKSIADVCEAIIGASYLSYTDEGNFDMAVRAVTAVVRNKNHDMKSYE 1248

Query: 1237 DC-------ITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY----C 1285
            D        I +A+  S V ++     I+ ++GYEF    LL+ A  H S    +     
Sbjct: 1249 DYYKAFKMPIWQAAEPSAV-QMEASLQIKEQMGYEFKSPALLRSAFKHPSYPRQFESVPN 1307

Query: 1286 YQNL--------------------------------------------------YKHLQH 1295
            YQ L                                                  Y+ + H
Sbjct: 1308 YQRLEFLGDALLDMVCVDFLFRKFPDADPQWLTEHKMAMVSNHFLGSLSVELGFYRRVLH 1367

Query: 1296 CSTLLLSQITEYVKSFPKPGETTDSGPSMKA-------------PKALGDLLESIVGAVL 1342
             ++++ +QI +YV +     +  ++   +               PK L D++E+ +GA+ 
Sbjct: 1368 FNSIMANQIKDYVDALTHARQEAEAVAQISGTVSRDYWLNVKHPPKFLSDVVEAYIGAIF 1427

Query: 1343 IDTKLNLDEVWRIFKPILSPI 1363
            +D+  +  +V   F+  + P 
Sbjct: 1428 VDSGYDYGQVQAFFEKHIRPF 1448


>gi|109478606|ref|XP_001068155.1| PREDICTED: endoribonuclease Dicer [Rattus norvegicus]
 gi|109479876|ref|XP_001069041.1| PREDICTED: endoribonuclease Dicer [Rattus norvegicus]
 gi|149025439|gb|EDL81806.1| rCG20888 [Rattus norvegicus]
          Length = 1918

 Score =  251 bits (642), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 205/736 (27%), Positives = 348/736 (47%), Gaps = 109/736 (14%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN--GFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K++A  I+ +     K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLSPHAKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCDSCPSCPRILGLTAS--ILNGKCDPDE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSGA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L  +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALDFINDCNVSVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    F + +L  I +   L ++ F         ++DL Y+
Sbjct: 329 -LQKYIKHEQE-ELHRKFLL----FTDTLLRKIHA---LCEEYF------SPASLDLKYV 373

Query: 396 STKLHELLQLFLSF---------------------------------------------- 409
           + K+ +LL++   +                                              
Sbjct: 374 TPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETN 433

Query: 410 --GKSTQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV 462
                T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K 
Sbjct: 434 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQ 493

Query: 463 -------QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
                  Q+EVL  FR  + NLL AT V+EEG+ +P C+ V+RFDLP    SY+QS+GRA
Sbjct: 494 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553

Query: 516 RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS---- 571
           R   S ++++ +   +K   +     ++   +     S+  +         V        
Sbjct: 554 RAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDGAEADVHAVVDDDDVFPP 613

Query: 572 YIV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNA 628
           Y++  +  G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+
Sbjct: 614 YVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINS 673

Query: 629 PFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKN 683
           P + +IVGP      L++++V L  CEKLH++G L++HL+P    +V+   E +L  ++ 
Sbjct: 674 PLRASIVGPPMGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEE 733

Query: 684 ESLPG-AGTTKRKELH 698
            S+PG  G+TKR++ +
Sbjct: 734 TSVPGRPGSTKRRQCY 749



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 71/123 (57%), Gaps = 3/123 (2%)

Query: 1029 PSVMQRLESL--MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDS 1086
            P++M  +E+L     S+    +   SR       LIL+ALT     + F++ERLE+LGDS
Sbjct: 1262 PAMMTAVEALEGRTDSEQSPSVGHSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDS 1321

Query: 1087 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWV 1145
             LK+A++ +LF TYP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+
Sbjct: 1322 FLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKQGLPSRMVVSIFDPPVNWL 1381

Query: 1146 APG 1148
             PG
Sbjct: 1382 PPG 1384



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 68/118 (57%), Gaps = 14/118 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1801 PKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1860

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEV 1438
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+ 
Sbjct: 1861 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKA 1910



 Score = 44.3 bits (103), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|346716367|ref|NP_001231198.1| endoribonuclease Dicer [Cricetulus griseus]
 gi|257051055|sp|A0MQH0.3|DICER_CRIGR RecName: Full=Endoribonuclease Dicer
 gi|116831677|gb|ABK28790.1| DICER [Cricetulus griseus]
          Length = 1917

 Score =  251 bits (642), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 204/736 (27%), Positives = 350/736 (47%), Gaps = 109/736 (14%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K++A  I+   N   K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPRAKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V    A + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYASQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +++ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEAINFINDCNVSVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    F + +L  I +   L ++ F         ++DL Y+
Sbjct: 329 -LQKYIKHEQE-ELHRKFLL----FTDTLLRKIHA---LCEEHF------SPASLDLKYV 373

Query: 396 STKLHELLQLFLSF---------------------------------------------- 409
           + K+ +LL++   +                                              
Sbjct: 374 TPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETN 433

Query: 410 --GKSTQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV 462
                T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K 
Sbjct: 434 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQ 493

Query: 463 -------QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
                  Q+EVL  FR  + NLL AT V+EEG+ +P C+ V+RFDLP    SY+QS+GRA
Sbjct: 494 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553

Query: 516 RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS---- 571
           R   S ++++ +   ++   +     ++   +     S+  +         V        
Sbjct: 554 RAPISNYVMLADTDKIQSFEEDLKTYKAIEKILRNKCSKSVDGAEADVDAVVDDDDVFPP 613

Query: 572 YIV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNA 628
           Y++  +  G  VT ++++  ++RYC  LPSD +    P  + +   +  +   L LP N+
Sbjct: 614 YVLRPDDGGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTQELPDGTFYSTLYLPINS 673

Query: 629 PFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKN 683
           P + +IVGP      L++++V L  CEKLH++G L++HL+P    +V+   E +L  ++ 
Sbjct: 674 PLRASIVGPPMGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEE 733

Query: 684 ESLPG-AGTTKRKELH 698
            S+PG  G+TKR++ +
Sbjct: 734 TSVPGRPGSTKRRQCY 749



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 3/124 (2%)

Query: 1028 LPSVMQRLESL--MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGD 1085
            +P+VM    +L   + S+        SR       LIL+ALT     + F++ERLE+LGD
Sbjct: 1261 MPAVMSAGRALKDRMDSEQSPSAGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1320

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RW 1144
            S LK+A++ +LF TYP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W
Sbjct: 1321 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1380

Query: 1145 VAPG 1148
            + PG
Sbjct: 1381 LPPG 1384



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1800 PKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1859

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1860 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1911

Query: 1441 KRI 1443
             ++
Sbjct: 1912 PQV 1914



 Score = 44.3 bits (103), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|332223646|ref|XP_003260983.1| PREDICTED: endoribonuclease Dicer isoform 1 [Nomascus leucogenys]
 gi|332223648|ref|XP_003260984.1| PREDICTED: endoribonuclease Dicer isoform 2 [Nomascus leucogenys]
 gi|441666339|ref|XP_004091884.1| PREDICTED: endoribonuclease Dicer [Nomascus leucogenys]
          Length = 1922

 Score =  251 bits (642), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 207/726 (28%), Positives = 347/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  +  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV--ESTGA 579
            +   +K   +     ++   +     S+  +         +        Y++  +  G 
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLRPDDGGP 623

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 693 KRKELH 698
           KR++ +
Sbjct: 744 KRRQCY 749



 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            + S+    +   SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF T
Sbjct: 1275 MDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1334

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            YP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1335 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1805 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1864

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1865 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1916

Query: 1441 KRI 1443
             ++
Sbjct: 1917 PQV 1919



 Score = 44.3 bits (103), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|426248555|ref|XP_004018028.1| PREDICTED: endoribonuclease Dicer [Ovis aries]
          Length = 1922

 Score =  251 bits (642), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 210/728 (28%), Positives = 349/728 (47%), Gaps = 94/728 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+   N   +  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRSGRRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VLVMT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVTASWTKEKWNQEFTKHQVLVMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILRSNA---ETATDLVVVDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKHIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S ++++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML 563

Query: 526 LERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVE-ST 577
            +         +LK    +  I+R++ S +      D E        +     Y++    
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDDDDVF---PPYVLRPED 620

Query: 578 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVG 635
           G  VT ++++  ++RYC  LPSD +    P  + +   +  +   L LP N+P + +IVG
Sbjct: 621 GPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVG 680

Query: 636 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AG 690
           P      L++++V L  CE+LH++G L+DHL+P    +V+   E +L  ++  S+PG  G
Sbjct: 681 PPMSCIRLAERVVALICCERLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPG 740

Query: 691 TTKRKELH 698
           +TKR++ +
Sbjct: 741 STKRRQCY 748



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  
Sbjct: 1287 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYM 1346

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1347 RSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1805 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1864

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1865 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1916

Query: 1441 KRI 1443
             ++
Sbjct: 1917 PQV 1919



 Score = 43.9 bits (102), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 954  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1013

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1014 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1072


>gi|344248388|gb|EGW04492.1| Endoribonuclease Dicer [Cricetulus griseus]
          Length = 1907

 Score =  251 bits (642), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 204/736 (27%), Positives = 350/736 (47%), Gaps = 109/736 (14%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K++A  I+   N   K  +FL  
Sbjct: 32  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPRAKRTVFLVN 91

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 92  SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTKHQVLIMTCYVALNVLKN 151

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 152 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPEE 208

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V    A + C        CG  +D  G  E    
Sbjct: 209 LEEKIQKLEKILKSNA---ETATDLVVLDRYASQPCEIVVD---CGPFTDRSGLYERLLM 262

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +++ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 263 ELEEAINFINDCNVSVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 318

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    F + +L  I +   L ++ F         ++DL Y+
Sbjct: 319 -LQKYIKHEQE-ELHRKFLL----FTDTLLRKIHA---LCEEHF------SPASLDLKYV 363

Query: 396 STKLHELLQLFLSF---------------------------------------------- 409
           + K+ +LL++   +                                              
Sbjct: 364 TPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETN 423

Query: 410 --GKSTQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV 462
                T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K 
Sbjct: 424 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQ 483

Query: 463 -------QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
                  Q+EVL  FR  + NLL AT V+EEG+ +P C+ V+RFDLP    SY+QS+GRA
Sbjct: 484 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 543

Query: 516 RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS---- 571
           R   S ++++ +   ++   +     ++   +     S+  +         V        
Sbjct: 544 RAPISNYVMLADTDKIQSFEEDLKTYKAIEKILRNKCSKSVDGAEADVDAVVDDDDVFPP 603

Query: 572 YIV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNA 628
           Y++  +  G  VT ++++  ++RYC  LPSD +    P  + +   +  +   L LP N+
Sbjct: 604 YVLRPDDGGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTQELPDGTFYSTLYLPINS 663

Query: 629 PFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKN 683
           P + +IVGP      L++++V L  CEKLH++G L++HL+P    +V+   E +L  ++ 
Sbjct: 664 PLRASIVGPPMGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEE 723

Query: 684 ESLPG-AGTTKRKELH 698
            S+PG  G+TKR++ +
Sbjct: 724 TSVPGRPGSTKRRQCY 739



 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 3/124 (2%)

Query: 1028 LPSVMQRLESL--MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGD 1085
            +P+VM    +L   + S+        SR       LIL+ALT     + F++ERLE+LGD
Sbjct: 1251 MPAVMSAGRALKDRMDSEQSPSAGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1310

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RW 1144
            S LK+A++ +LF TYP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W
Sbjct: 1311 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1370

Query: 1145 VAPG 1148
            + PG
Sbjct: 1371 LPPG 1374



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1790 PKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1849

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1850 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1901

Query: 1441 KRI 1443
             ++
Sbjct: 1902 PQV 1904



 Score = 44.3 bits (103), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 945  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1004

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1005 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1063


>gi|307133775|ref|NP_001182502.1| endoribonuclease Dicer isoform 2 [Homo sapiens]
 gi|300517087|gb|ADK25182.1| t-Dicer [Homo sapiens]
          Length = 1829

 Score =  251 bits (642), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 207/726 (28%), Positives = 347/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  +  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV--ESTGA 579
            +   +K   +     ++   +     S+  +         +        Y++  +  G 
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLRPDDGGP 623

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 693 KRKELH 698
           KR++ +
Sbjct: 744 KRRQCY 749



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            + S+    I   SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF T
Sbjct: 1275 MDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1334

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            YP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1335 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384



 Score = 44.3 bits (103), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|330913942|ref|XP_003296428.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
 gi|311331414|gb|EFQ95479.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
          Length = 1572

 Score =  251 bits (642), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 193/670 (28%), Positives = 323/670 (48%), Gaps = 90/670 (13%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA----IKSNGFKKLIIFLAP 101
           PR YQ ++F+ AK  N IAVL+TG+GKT IA +L++ +  A        G  K+  FL  
Sbjct: 117 PRDYQTELFQRAKGENVIAVLDTGSGKTHIATLLLRHVLDAELEHRAKGGAPKMAFFLVD 176

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V+LV QQ +V+R   D  VE   G+ G   W  + WQ   + N V+V T ++L+  +  
Sbjct: 177 SVNLVFQQSNVLRCGLDQNVEGICGSMGASLWSRKTWQTYFDTNMVIVCTAEVLVQCMMH 236

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HKSD--NKPKVFGMTASPVVRKGVSS 218
           +F+++  +  ++ DE HHA  NHPY ++MK++Y H+ D   +P++FGMTASPV  KG+ S
Sbjct: 237 SFITMSQINLLIFDEAHHAKSNHPYARLMKDYYAHELDLSKRPRIFGMTASPVDTKGL-S 295

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD--QSKFCGSDLKGKLEV 276
           A   +    +LE  L +++ T  + T     +    E    Y   Q +F  + L  K++ 
Sbjct: 296 ADHIKQAAGDLEKLLYAKIATTTESTLASNSISRPDEEVAIYTCLQDEF-ETPLHQKIKT 354

Query: 277 ------SWSKFDASLSKLQGSQLN----------CYKDMDDKHKTLRKQLSDYHAKILYC 320
                 S+ KF  + SK  G +L            + D   +    R++L    A +   
Sbjct: 355 KFGDLPSFKKFFVA-SKRHGVELGRWASDMYWSFAFADEQSRKFQERERLKHNRANV--- 410

Query: 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
                     + V+    K+ + QE  E  RQ                            
Sbjct: 411 ---------DDDVQKWDAKLKRLQEAAEFVRQ---------------------------F 434

Query: 381 DFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL 440
           DFG       D+     KLH  L  +  + +S +  CI+FVE+   A++++     +   
Sbjct: 435 DFGECTLSDKDVSSKVLKLHYWLHRY--YERSDEARCIVFVEQRQTARLLQLIFASLGG- 491

Query: 441 THLTVAYLTGSTTSVDALTPKVQKEVL--ESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
            +L  + L G    ++     ++ ++L    FR G++N LFAT V EEG+ +P C+ V+R
Sbjct: 492 PNLRCSVLVGVNNRINEQNISLRNQILTVAKFRRGELNCLFATSVAEEGLDIPQCNLVVR 551

Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD--TALSRDP 556
           FDL +T+ +Y+QSRGRAR  NS+++ MLE GN   R ++ D+ R E+ + +    L +D 
Sbjct: 552 FDLYRTMIAYVQSRGRARHRNSKYLHMLEEGNHDHRERIMDVKRDEQVMRNFCRDLPQDR 611

Query: 557 EAC-FLKACTYV---KTKSY--IVESTGASVTTDSSVNLIHRYCEMLPS-DKYYTPKPIF 609
           +   F K    +   + KS+   V   GA ++  SS+++++ +   LP  D+    +P +
Sbjct: 612 QINEFDKDSMNLLMFEDKSFPIFVTKPGAKLSYRSSLSILNHFVATLPGPDRQTLLQPTY 671

Query: 610 KYKS---------AEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVG 660
              S             + CE+ LP  +P  +I+G     K ++K     + C +L++ G
Sbjct: 672 VISSEFQHNAIDPQRRGFVCEVILPEYSPVTSIIGDIQGKKTIAKCSAAFKTCLQLYKKG 731

Query: 661 ALNDHLLPSV 670
            L+D+LLP+ 
Sbjct: 732 YLDDNLLPTT 741



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 164/419 (39%), Gaps = 86/419 (20%)

Query: 961  HPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPIS 1020
            +P QP+L +++     N L    D     KG    + T       ++ PE L+  ++   
Sbjct: 982  NPSQPVLEVEKIPFRRNHLARIED---KEKGELDDLKT-------YVCPEPLLVSNLATP 1031

Query: 1021 VVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT------------- 1067
             V   Y+LP+++ R ES ++A        C   +  +  +L LEALT             
Sbjct: 1032 FVVMCYVLPAIIHRFESYLIALDA-----CEVLDLKVSPALALEALTKDSENSEEHGEEK 1086

Query: 1068 -TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL-- 1124
                     + ERLE LGD  LK A S  +F+  P ++E +   RR   +CN  L +   
Sbjct: 1087 INFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPDENEFEFHVRRMEMLCNKNLLETAI 1146

Query: 1125 ---------GTDRKLQ--GYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFF 1173
                     GT+R +Q   YIR  +F  R W   G   LR      GV+  E   D    
Sbjct: 1147 GKKKVTSADGTERDIQLYNYIRTDSFSRRTWYPEGMKLLRGK----GVNKSED--DWLKL 1200

Query: 1174 TQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGA----YYVGGGLIAALY-----MMKWL 1224
            T +               +G K+IAD  EA IGA    +Y GG   AA +      +K  
Sbjct: 1201 THN---------------LGDKSIADVCEAFIGAAFQEHYKGGRWNAADWDETVKAVKLF 1245

Query: 1225 GIDADLEVSLVDDCITRASLRSY------VPRINEIKDIESKIGYEFTVKFLLQEAITHA 1278
                D E+S   D      +  Y         ++  + IE+K  Y F    LL+ A  H 
Sbjct: 1246 ANSPDHEMSNWADYYAAYQMPKYQIADATAAMLDMARKIEAKHPYHFKYPRLLRSAFAHP 1305

Query: 1279 SVQEFYCYQNL--YKHLQHCSTLLLSQ--ITEYVKSFP--KPGETTDSGPSMKAPKALG 1331
            S    Y Y+N+  Y+ L+     LL    IT     +P   P   T+    M + K LG
Sbjct: 1306 SYP--YIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPDKDPQWLTEHKTPMVSNKFLG 1362


>gi|348554455|ref|XP_003463041.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Cavia
           porcellus]
          Length = 1929

 Score =  251 bits (641), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 205/726 (28%), Positives = 346/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  +  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+ L+ 
Sbjct: 102 SANQVPQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCSVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALTFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEA----CFLKACTYVKTKSYIV--ESTGA 579
            +   +K   +     ++   +     S+  +                  Y++  +  G 
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEADVDPVVDDDDVFPPYVLRPDDGGP 623

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +I+GP 
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIIGPP 683

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L++HL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 693 KRKELH 698
           KR++ +
Sbjct: 744 KRRQCY 749



 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  
Sbjct: 1287 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYM 1346

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1347 RSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1812 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1871

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1872 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1923

Query: 1441 KRI 1443
             ++
Sbjct: 1924 PQV 1926



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|281427125|ref|NP_001163918.1| dicer 1, ribonuclease type III [Xenopus laevis]
 gi|261826170|gb|ACX94846.1| truncated double-stranded RNA-specific endoribonuclease type III
           [Xenopus laevis]
          Length = 1795

 Score =  251 bits (640), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 216/732 (29%), Positives = 344/732 (46%), Gaps = 99/732 (13%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   N I  L +G+GKT IAV+L K+++  I+ +  K  K  +FL  
Sbjct: 32  YTPRKYQVELLEAALDHNIIVCLNSGSGKTFIAVLLSKELSYQIRGDFSKNAKRTVFLVN 91

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +   V QQ   +R HTD +V EY   +    W    W +E   + VLVMT  I L+ L+ 
Sbjct: 92  SEKQVSQQVSAVRTHTDLKVGEYSDLQKTQCWAKGKWYQEFQTHQVLVMTCHIFLNVLKT 151

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
             +SL  +  +V DECH A  +HPY  IMK         P++ G+TAS  +  G     D
Sbjct: 152 GNVSLSNINLLVFDECHLAIQDHPYRDIMK-ICESCQTCPRILGLTAS--ILNGKCDPHD 208

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVSWS 279
            E +I  LE  L S     E  T++ V    A + C        CG   D  G  +   +
Sbjct: 209 LEEKIQNLEEILRSNA---ETATDLVVLDRYASQPCEIVLD---CGPYVDRSGLYQRLLN 262

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + D +L+ L    ++ +    D     ++ LSD  A +L    +C D++  +   E    
Sbjct: 263 ELDEALNFLTDCNISTHSKERDSTIISKQILSDCWAVLLVLGPWCADKVAGMMVRE---- 318

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF----LDFGFDYSKAVD 391
            L+K +K ++E E++R+  L    F + +L  I +   L ++ F    LD  F   K + 
Sbjct: 319 -LQKYIKHEQE-ELHRKFLL----FTDTILRKIHA---LCEEHFSPASLDMKFVTPKVIK 369

Query: 392 LGYISTKL--HELLQL-------------FLSFGKS------------------------ 412
           L  I  K   +E  Q              ++S+  S                        
Sbjct: 370 LLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEDEEIEAKEKAETSFPSP 429

Query: 413 -TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV---- 462
            T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K     
Sbjct: 430 FTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVE 489

Query: 463 ---QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
              Q+EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   
Sbjct: 490 FRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKGRARAPI 549

Query: 520 SQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIVE 575
           S +I++ + G +K   +     +S   +     S+  +    ++   V        Y++ 
Sbjct: 550 SNYIMLADSGKIKAFEEDLKTYKSIEKILRNKCSKSMDCGNTESEPIVDDDEIFPPYVLR 609

Query: 576 STGAS--VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQT 632
               S  VT ++++  I+RYC  LPSD +    P  + +   +  Y   L LP N+P + 
Sbjct: 610 QDDGSPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGPYHSTLYLPINSPLRA 669

Query: 633 -IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLP 687
            IVGP      L+++ V L  C+KLH++G L+DHL+P    +V+   E +L  ++  S+P
Sbjct: 670 PIVGPPMNCARLAERAVALICCKKLHEIGELDDHLMPVGKETVKYEEELDLHDEEETSVP 729

Query: 688 G-AGTTKRKELH 698
           G  G+TKR++ +
Sbjct: 730 GRPGSTKRRQCY 741



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+ GDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1273 LILQALTLSNASDGFNLERLEMPGDSFLKHAITTYLFCTYPDSHEGRLSYMRSKKVSNCN 1332

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1150
            L++LG  +     +  S FDP   W+ PG +
Sbjct: 1333 LYRLGKKKGSPSRMVVSIFDPPVNWLPPGYI 1363



 Score = 43.5 bits (101), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 947  TPLSKFPSPEYETFAEYYKTKYDLDLTNLNQPLLDVDYTSSRLNLLTPRHLNQKGKALPL 1006

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                +     +  Q    + PEL     VP S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1007 SSAERRKAKWESLQNKQILVPELCAIHPVPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1065


>gi|432096208|gb|ELK27069.1| Endoribonuclease Dicer [Myotis davidii]
          Length = 1970

 Score =  251 bits (640), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 205/739 (27%), Positives = 350/739 (47%), Gaps = 115/739 (15%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A  RNTI  L TG+GKT IAV+L K+++  I+ +  +  K  +FL  
Sbjct: 32  YTPRKYQVELLEAALDRNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRHGKRTVFLVN 91

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   + +  W  + W +E  K+ VL+MT  + L  L+ 
Sbjct: 92  SANQVAQQVSAVRTHSDLKVGEYAHLEVLASWTKEKWNQEFTKHQVLIMTCYVALIVLKN 151

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 152 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPEE 208

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVSWS 279
            E +I +LE  L S   T  D   ++ +      + + Y+    CG   D  G  E    
Sbjct: 209 LEEKIQKLEKILKSNAETATDLVVLDRY------TSQPYEIVVDCGPFMDRSGLYERLLM 262

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++ +    D     ++ L+D  A ++    +C D++  +   E    
Sbjct: 263 ELEEALNFVNDCNISAHSKERDSTLISKQILADCRAVLVVLGPWCADKVAGMMVRE---- 318

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+       FL ++  +       A             A+DL ++
Sbjct: 319 -LQKHIKHEQE-ELHRKFLPFTDTFLRKIHALCEEHFSPA-------------ALDLRFV 363

Query: 396 STKLHELLQLFLSF---------------------------------------------- 409
           + K+  LL++   +                                              
Sbjct: 364 TPKVIRLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETN 423

Query: 410 --GKSTQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV 462
                T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K 
Sbjct: 424 FPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQ 483

Query: 463 -------QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
                  Q+EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRA
Sbjct: 484 MEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 543

Query: 516 RQHNSQFILMLERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVK 568
           R   S +I++ +         +LK    +  I+R++ S +      D E        +  
Sbjct: 544 RAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIEPVVDDDDVF-- 601

Query: 569 TKSYIV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLP 625
              Y++  +  G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP
Sbjct: 602 -PPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLP 660

Query: 626 SNAPFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLIS 680
            N+P + +IVGP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  
Sbjct: 661 INSPLRASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHD 720

Query: 681 KKNESLPG-AGTTKRKELH 698
           ++  S+PG  G+TKR++ +
Sbjct: 721 EEETSVPGRPGSTKRRQCY 739



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  
Sbjct: 1277 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYM 1336

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            RS  V N  L++LG  R L   +  S FDP   W+ PG
Sbjct: 1337 RSKKVSNCNLYRLGKKRGLPSRMVVSIFDPPVNWLPPG 1374



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1853 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1912

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1913 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1964

Query: 1441 KRI 1443
             ++
Sbjct: 1965 PQV 1967



 Score = 44.7 bits (104), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 945  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1004

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPSV+ RL  L+ A +LR +
Sbjct: 1005 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSVLYRLHCLLTAEELRAQ 1063


>gi|452003006|gb|EMD95463.1| hypothetical protein COCHEDRAFT_1026333 [Cochliobolus
           heterostrophus C5]
          Length = 1592

 Score =  250 bits (638), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 190/667 (28%), Positives = 320/667 (47%), Gaps = 85/667 (12%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA----IKSNGFKKLIIFLAP 101
           PR YQ ++F+ AK  N IAVL+TG+GKT IA +L++ +           G  ++  FL  
Sbjct: 117 PRDYQTELFQRAKSENVIAVLDTGSGKTHIATLLLRHVLDMELDHRARGGIPRMAFFLVD 176

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V+LV QQ +V+R   D  VE   G+ G   W    WQ   +KN ++V T ++L+  +  
Sbjct: 177 SVNLVFQQANVLRCGLDQNVEGICGSMGASLWSKSTWQSYFDKNMIIVCTAEVLVQCMMH 236

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS---DNKPKVFGMTASPVVRKGVSS 218
           +F+++  +  ++ DE HHA  NHPY ++MK++Y +      +P++FGMTASPV  KG+S+
Sbjct: 237 SFMTMSQINLLIFDEAHHAKSNHPYARLMKDYYLQEIDVSQRPRIFGMTASPVDTKGLSA 296

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ-SKFCGSDLKGKLEVS 277
               E     LE  L S++ T  + T     +    E    Y +  +   + L  K+   
Sbjct: 297 DHIKEA-ARNLEKLLHSKIATTAESTLASNSISRPDEEVAMYPRLQEEYETPLHQKIRAR 355

Query: 278 WSK---FDASL--SKLQGSQLNCY-KDM-------DDKHKTLRKQLSDYHAKILYCLDEL 324
           +     FD     SK  G +L  +  DM       D++ + L ++    H+K        
Sbjct: 356 FGDIRAFDKYFLASKRHGRELGRWASDMYWSFVFTDEQSRKLEQRERLKHSK-------- 407

Query: 325 GLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF 384
                 + VK    KV + QE  E  +Q +                A  L+D+       
Sbjct: 408 ---NRPDEVKEWDAKVKRLQEAAEFVQQFNF--------------GACTLSDQ------- 443

Query: 385 DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT 444
                 DL     KL+  L L+  + +S +  CI+FVE+   A++++    ++    HL 
Sbjct: 444 ------DLSSKVQKLYYWLNLY--YERSDEARCIVFVEQRQTARLLQLIFSQIGG-PHLR 494

Query: 445 VAYLTGSTTSVDALTPKVQKEVL--ESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
            + L G  TS       ++ ++L    FR G++N LFAT V EEG+ +P C+ V+RFDL 
Sbjct: 495 CSVLVGINTSEHEQNISLRNQILTVAKFRRGELNCLFATSVAEEGLDIPQCNLVVRFDLY 554

Query: 503 KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSV--------TDTALSR 554
           +T+ +Y+QSRGRAR  NS+++ M+E GN   R ++ D+   E+ +         D  +  
Sbjct: 555 RTMIAYVQSRGRARHRNSKYLHMIEEGNHDHRERVMDVKLDEQVMRRFCRELPQDRHIDE 614

Query: 555 -DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPS-DKYYTPKPIF--- 609
            D ++  L         S+I +  GA ++  SS+ +++ +   LP  D+    +P +   
Sbjct: 615 YDNDSMDLLTFEDQLYPSFITK-LGAKLSFRSSLAILNHFVATLPGPDRQTMLQPTYVVC 673

Query: 610 ------KYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALN 663
                    +    +  E+ LP ++P  TI+G     K ++K     +AC +L++ G L+
Sbjct: 674 PDLNYDGLDAQRRGFVSEVILPEHSPINTIIGDVQSKKAIAKCSAAYKACLELYKKGYLD 733

Query: 664 DHLLPSV 670
           D+LLP+ 
Sbjct: 734 DNLLPTT 740



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 107/446 (23%), Positives = 164/446 (36%), Gaps = 103/446 (23%)

Query: 951  FSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPE 1010
            ++    I+  +  QP+L+ ++     N L +  D     KG  S +        +++ PE
Sbjct: 971  WTRNRNILKWNQSQPVLQAERIPLRRNQLAHIED---KEKGDFSNLK-------IYICPE 1020

Query: 1011 LLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTT-- 1068
                 ++    V   Y+LP+++ R ES ++A +      C      +  +L LEALT   
Sbjct: 1021 PFHISNLATPFVVMCYVLPAIIHRFESYLIALEA-----CSVLELKVNPALALEALTKDS 1075

Query: 1069 ----------------LG-CCESFSME------------RLELLGDSVLKYAVSCHLFLT 1099
                            +G   E +  E             LE LGD  LK A S  +F+ 
Sbjct: 1076 ENSEEHDEEKINFKSGMGPNYERYGYELRMNGFKLTLGLSLEFLGDCFLKMATSLSVFVQ 1135

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKL-----------GTDRKLQ--GYIRDSAFDPRRWVA 1146
             P ++E +   RR   +CN  L +            GT++ LQ   YIR  +F  R W  
Sbjct: 1136 QPDENEFEFHVRRMEMLCNKNLMETAVGNKKVVSPEGTEKDLQLYKYIRTESFSRRTWYP 1195

Query: 1147 PGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
             G   L+                G   +QD  +       + H  +G K+IAD  EA IG
Sbjct: 1196 EGLRLLKG--------------KGANKSQDDWL------KLTHN-LGDKSIADVCEAFIG 1234

Query: 1207 A----YYVG-----GGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSY------VPRI 1251
            A    +Y G          A+  +K      D  +S   D         Y         +
Sbjct: 1235 ATLQEHYTGDRWRPNDWDEAVKAVKLFANSPDHTMSKWSDYYEAYQKPKYQTAEASAAML 1294

Query: 1252 NEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNL--YKHLQHCSTLLLSQ--ITEY 1307
            +  + IE K  Y F    LL+ A  H S    Y Y+N+  Y+ L+     LL    IT  
Sbjct: 1295 DMARKIEMKHPYHFKYPRLLRSAFAHPSYP--YMYENIPNYQRLEFAGDALLDMAFITHL 1352

Query: 1308 VKSFP--KPGETTDSGPSMKAPKALG 1331
               +P   P   T+    M + K LG
Sbjct: 1353 YFKYPDKDPHWLTEHKTPMVSNKFLG 1378


>gi|326481629|gb|EGE05639.1| hypothetical protein TEQG_04648 [Trichophyton equinum CBS 127.97]
          Length = 1519

 Score =  250 bits (638), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 194/644 (30%), Positives = 314/644 (48%), Gaps = 51/644 (7%)

Query: 41  SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFK-KLI 96
           SI   PR YQL++FE AK +N IAVLETG+GKT+IAV+L+K + +     +S G   ++ 
Sbjct: 106 SIIHDPREYQLELFEKAKEKNIIAVLETGSGKTLIAVLLLKHVIEQELTDRSLGLPPRIS 165

Query: 97  IFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
            FL  +V LV+QQ  V++ +   +++++ GA   D W+ + W+    +N V+V T ++L 
Sbjct: 166 FFLVDSVTLVYQQAAVLQNNIPQKIDKFCGAMQTDLWNKETWEGHFKRNMVIVCTAEVLH 225

Query: 157 DALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-DNKPKVFGMTASPVVRKG 215
             L  +F+ +D +  ++ DE HHA   HPY +I+K+FY K  + KPK+FGMTASP     
Sbjct: 226 QCLLHSFIQIDQINLLIFDEAHHAKKEHPYARIIKDFYLKEPERKPKIFGMTASP----- 280

Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275
           V + ++  G    LE+ LDSQ+ T  +   +   V    E    YD+       L+   E
Sbjct: 281 VDAKVEVVGAAKTLEAMLDSQITTASNPALLRQSVTRPTEEIWEYDR-------LELPFE 333

Query: 276 VS-WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334
              +SK       ++  +   +K   +   +L    SD+     YCL E  L        
Sbjct: 334 TPLYSKLRQKFGDIKVLE-KVFKFSRETSSSLGSWCSDWIWS--YCLSEETLPKLEARSN 390

Query: 335 ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGY 394
             L K +  Q  C+   +   +    ++E  H  G   P+A+   L      S+ V L  
Sbjct: 391 RPLMKSVPNQSSCDTEAERIREAGAIIKE--HEFGD--PVANPELL------SRKVLLLR 440

Query: 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP---FLTHLTVAYLTGS 451
                         F ++    CI+F  +   A+++    KK+       +L V   +G 
Sbjct: 441 DQLL--------RRFKENPDTRCIVFTAQRHTARILRDLFKKIGSQYIRPNLLVGVRSGG 492

Query: 452 TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
                 ++ + Q   + +FR G++N LFAT V EEG+ + +C+ ++RFDL  T+  YIQS
Sbjct: 493 DKIGLDISFREQFLNVIAFRKGEINCLFATSVAEEGLDIQDCNLIVRFDLYSTLIQYIQS 552

Query: 512 RGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYV---- 567
           RGRAR   S F  M+ER NL     + ++ RSE  +T    S  PE   LK    +    
Sbjct: 553 RGRARHMESTFAHMVERNNLMHETAVEEVRRSEEVLTRFCKSL-PEDRLLKGTGDIDMMI 611

Query: 568 ----KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELT 623
               + KSY ++STGA +T  SS+ ++  Y   L  +K  + +  +     + A+ CE  
Sbjct: 612 EKDRQQKSYTIKSTGAKLTYPSSLAVLAHYASTLQYEKELSTQVSYIIHPKDGAFICETI 671

Query: 624 LPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
           LP  +P +  +G ++  K L+KQ    E C  L +   L+++ +
Sbjct: 672 LPEKSPIRGCMGKSASRKLLAKQSAAFETCLLLRKNRLLDEYFI 715



 Score = 97.1 bits (240), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 160/448 (35%), Gaps = 114/448 (25%)

Query: 997  NTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFH 1056
            N K P +  ++  E L    + + +   +++ P+++ R+ES ++A +      C      
Sbjct: 983  NQKSPPVDYYVCAEALKISAISVPLATQIFVFPAIIWRMESYLIALEA-----CEKLQLK 1037

Query: 1057 IPSSLILEALTTLG-CCESFSME-------------RLELLGDSVLKYAVSCHLFLTYPK 1102
            IP  L LEALT      E   ME             RLE LGD  LK A S  LF   P 
Sbjct: 1038 IPPELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPD 1097

Query: 1103 KHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVD 1162
              E     +R   +CN  L       ++  +IR  +F  R W   G   L+      G D
Sbjct: 1098 NDEYDYHVKRMLLICNQNLFNNAIILEIFKFIRSRSFSRRAWYPEGLTLLK------GKD 1151

Query: 1163 TLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL-----IAA 1217
              E P                  +     +  KTIAD  EALIGA  + GG      +A 
Sbjct: 1152 KKEGP------------------NGPEHALADKTIADVCEALIGASLLAGGPDHKFDMAT 1193

Query: 1218 LYMMKWLGIDADLEVSLVDDCITRASLRSY------VPRINEIKDIESKIGYEFTVKFLL 1271
              +  ++  D D  V    D     SL +Y         I+    I+SK+GY F    LL
Sbjct: 1194 KAVTVFVNSD-DHRVEKWADYSRLYSLPNYQTASASASEIDVANQIQSKLGYCFKYPKLL 1252

Query: 1272 QEAITHASVQEFY----CYQ---------------------------------------- 1287
            + A  H S    +    CYQ                                        
Sbjct: 1253 RSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSN 1312

Query: 1288 ----------NLYKHLQHCSTLLLSQITEYVKSFPK-----PGETTDSGPSMKAPKALGD 1332
                      NL+ HL H S  L  QIT Y +          G       + + PK L D
Sbjct: 1313 KFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEGNLEAWTYTNEPPKCLPD 1372

Query: 1333 LLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
            ++E+ +GA+ +D+  N D V   F+  +
Sbjct: 1373 IVEAYLGAIFVDSNFNFDVVDEFFRKFI 1400


>gi|326472405|gb|EGD96414.1| dicer [Trichophyton tonsurans CBS 112818]
          Length = 1519

 Score =  249 bits (637), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 194/644 (30%), Positives = 313/644 (48%), Gaps = 51/644 (7%)

Query: 41  SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFK-KLI 96
           SI   PR YQL++FE AK +N IAVLETG+GKT+IAV+L+K + +     +S G   +  
Sbjct: 106 SIIHDPREYQLELFEKAKEKNIIAVLETGSGKTLIAVLLLKHVIEQELTDRSLGLPPRFS 165

Query: 97  IFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
            FL  +V LV+QQ  V++ +   +++++ GA   D W+ + W+    +N V+V T ++L 
Sbjct: 166 FFLVDSVTLVYQQAAVLQNNIPQKIDKFCGAMQTDLWNKETWEGHFKRNMVIVCTAEVLH 225

Query: 157 DALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-DNKPKVFGMTASPVVRKG 215
             L  +F+ +D +  ++ DE HHA   HPY +I+K+FY K  + KPK+FGMTASP     
Sbjct: 226 QCLLHSFIQIDQINLLIFDEAHHAKKEHPYARIIKDFYLKEPERKPKIFGMTASP----- 280

Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275
           V + ++  G    LE+ LDSQ+ T  +   +   V    E    YD+       L+   E
Sbjct: 281 VDAKVEVVGAAKTLEAMLDSQITTASNPALLRQSVTRPTEEIWEYDR-------LELPFE 333

Query: 276 VS-WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334
              +SK       ++  +   +K   +   +L    SD+     YCL E  L        
Sbjct: 334 TPLYSKLRQKFGDIKVLE-KVFKFSRETSSSLGSWCSDWIWS--YCLSEETLPKLEARSN 390

Query: 335 ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGY 394
             L K +  Q  C+   +   +    ++E  H  G   P+A+   L      S+ V L  
Sbjct: 391 RPLMKSVPNQSSCDTEAERIREAGAIIKE--HEFGD--PVANPELL------SRKVLLLR 440

Query: 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP---FLTHLTVAYLTGS 451
                         F ++    CI+F  +   A+++    KK+       +L V   +G 
Sbjct: 441 DQLL--------RRFKENPDTRCIVFTAQRHTARILRDLFKKIGSQYIRPNLLVGVRSGG 492

Query: 452 TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
                 ++ + Q   + +FR G++N LFAT V EEG+ + +C+ ++RFDL  T+  YIQS
Sbjct: 493 DKIGLDISFREQFLNVIAFRKGEINCLFATSVAEEGLDIQDCNLIVRFDLYSTLIQYIQS 552

Query: 512 RGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYV---- 567
           RGRAR   S F  M+ER NL     + ++ RSE  +T    S  PE   LK    +    
Sbjct: 553 RGRARHMESTFAHMVERNNLMHETAVEEVRRSEEVLTRFCKSL-PEDRLLKGTGDIDMMI 611

Query: 568 ----KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELT 623
               + KSY ++STGA +T  SS+ ++  Y   L  +K  + +  +     + A+ CE  
Sbjct: 612 EKDRQQKSYTIKSTGAKLTYPSSLAVLAHYASTLQYEKELSTQVSYIIHPKDGAFICETI 671

Query: 624 LPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
           LP  +P +  +G ++  K L+KQ    E C  L +   L+++ +
Sbjct: 672 LPEKSPIRGCMGKSASRKLLAKQSAAFETCLLLRKNRLLDEYFI 715



 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 160/448 (35%), Gaps = 114/448 (25%)

Query: 997  NTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFH 1056
            N K P +  ++  E L    + + +   +++ P+++ R+ES ++A +      C      
Sbjct: 983  NQKSPPVDYYVCAEALKISAISVPLATQIFVFPAIIWRMESYLIALEA-----CEKLQLK 1037

Query: 1057 IPSSLILEALTTLG-CCESFSME-------------RLELLGDSVLKYAVSCHLFLTYPK 1102
            IP  L LEALT      E   ME             RLE LGD  LK A S  LF   P 
Sbjct: 1038 IPPELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPD 1097

Query: 1103 KHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVD 1162
              E     +R   +CN  L       ++  +IR  +F  R W   G   L+      G D
Sbjct: 1098 NDEYDYHVKRMLLICNQNLFNNAIILEIFKFIRSRSFSRRAWYPEGLTLLK------GKD 1151

Query: 1163 TLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL-----IAA 1217
              E P                  +     +  KTIAD  EALIGA  + GG      +A 
Sbjct: 1152 KKEGP------------------NGPEHALADKTIADVCEALIGASLLAGGPDHKFDMAT 1193

Query: 1218 LYMMKWLGIDADLEVSLVDDCITRASLRSY------VPRINEIKDIESKIGYEFTVKFLL 1271
              +  ++  D D  V    D     SL +Y         I+    I+SK+GY F    LL
Sbjct: 1194 KAVTVFVNSD-DHRVEKWADYSRLYSLPNYQTASASASEIDVANQIQSKLGYCFKYPKLL 1252

Query: 1272 QEAITHASVQEFY----CYQ---------------------------------------- 1287
            + A  H S    +    CYQ                                        
Sbjct: 1253 RSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSN 1312

Query: 1288 ----------NLYKHLQHCSTLLLSQITEYVKSFPK-----PGETTDSGPSMKAPKALGD 1332
                      NL+ HL H S  L  QIT Y +          G       + + PK L D
Sbjct: 1313 KFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEGNLEAWTYTNEPPKCLPD 1372

Query: 1333 LLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
            ++E+ +GA+ +D+  N D V   F+  +
Sbjct: 1373 IVEAYLGAIFVDSNFNFDVVDEFFRKFI 1400


>gi|392567716|gb|EIW60891.1| hypothetical protein TRAVEDRAFT_146565 [Trametes versicolor
           FP-101664 SS1]
          Length = 1459

 Score =  249 bits (635), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 199/668 (29%), Positives = 313/668 (46%), Gaps = 69/668 (10%)

Query: 41  SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLA 100
           S   +PR YQ ++F  A++ N IA L+TG+GKT I+ +LIK IA   +  G   LI+FL 
Sbjct: 9   SDTLLPRRYQEEIFVRAQQGNVIAALDTGSGKTFISTLLIKWIAA--RDVGHNNLIVFLV 66

Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
           P V LV QQ + I   T   V ++ GA   D  D   W+ E   +DV VMT QI L+ + 
Sbjct: 67  PKVALVQQQGEFIAKQTSLRVRQFSGATAHDMGDRDGWKTEFENSDVFVMTAQIFLNLIT 126

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-DNKPKVFGMTASPVVRKGVSSA 219
            +   +D V  IV DECHH   NH Y  IM+E++     ++PK+FGMTASP     + + 
Sbjct: 127 HSHWGIDKVTLIVFDECHHTRKNHAYNGIMREYFQTPVGSRPKIFGMTASP-----IWNP 181

Query: 220 MDCEGQISELESTLDSQVFTI-EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
            +    ++ LE  LD++V  + E   E+    P   E  + Y        +   K     
Sbjct: 182 KNAAESLATLERNLDAKVIAVKEHMDELSGHSPKPTEIIQVYPAPPIKYPEYPSK----- 236

Query: 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGL-ICAYEAVKICL 337
                SL +L    LN      +    + K L+ Y    LY L   G  +  Y  VK  +
Sbjct: 237 -----SLRRL----LNLEDTPAEIGIPVDKILTRYEV-TLYSLGPFGAELFLYTEVKQRV 286

Query: 338 EKVLKAQEECEI-------YRQSSLQCKY---FLEEVLHVIGSALPLADKIFLDFGFDYS 387
            ++++   +  +       Y Q++         LE V   +   L    + F DF F+  
Sbjct: 287 AQMIQDALDLSMDYLTPAQYAQTARAGPVSPDMLENVPQKLKD-LHRTLESFRDF-FETP 344

Query: 388 KA------VDLGYISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL 440
           ++      + + + S K+ +L + LF  +  S Q   IIFVE+   A  +   ++++P L
Sbjct: 345 ESGSDPIPIPMSWCSPKVRKLAETLFERYTDSFQ--GIIFVEQRHVATCLAVILERIPLL 402

Query: 441 THLTVA-YLTG-----STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
            H+  +  L G     +      +  + Q++ ++ FR   +N+L AT V EEG+  P C 
Sbjct: 403 AHVIKSEQLVGHGKDTAKAHTKGMGTRNQQDTVKMFRERAINVLVATSVAEEGLDFPACD 462

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRS---------ER 545
            VIRFD  + +  Y+QSRGRAR   S FI+ML+ G   Q  +     +S         ER
Sbjct: 463 LVIRFDPVQHMVGYVQSRGRARHKTSTFIIMLQEGAQAQAERYLQFSQSEPHLKQVYQER 522

Query: 546 SVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
            +   A+  + E          + + Y+V STGA +T  S++ L++  C ++P DK +TP
Sbjct: 523 DLALKAIVEEEEDTHDDPEDLAERERYVVPSTGAVLTYTSAIGLLNHLCSLIPRDK-FTP 581

Query: 606 KPIFKYKSAEEAYECELTLPSNAPFQTIV----GPTSRNKNLSKQLVCLEACEKLHQVGA 661
             +  Y     A    + LPS+ P    +    GP  R+K  +K+     A + LH +  
Sbjct: 582 MHVPTYTGDVSA---TVHLPSSLPLPADLLVYQGPPRRSKKEAKRAAAFLAVKSLHVLNV 638

Query: 662 LNDHLLPS 669
            +D+LLP+
Sbjct: 639 FDDYLLPT 646



 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 162/425 (38%), Gaps = 101/425 (23%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P  + ++ ++LP +  R+  +  A + R  +        I   L+++ALT       F+
Sbjct: 910  MPEHIYRTFFVLPELCHRVTDVWRAHEARIALKLPP----IADDLLVQALTLPSTNAQFN 965

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +RLE LGD+VLK +   HL+  YP +HEGQL A +  +V N TL   G +R L+ ++  
Sbjct: 966  NQRLETLGDAVLKLSAVVHLYNKYPHRHEGQLDAMKRVSVANRTLLARGVERSLERHLSS 1025

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
                 R W                             + +  +   +P     R    K+
Sbjct: 1026 EPQSMRMW-------------------------RYVISSEDDLFSARPSRQAPRRFPRKS 1060

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE--- 1253
            + DC EAL+GA +  GG+  AL+    LG      VS              +P+      
Sbjct: 1061 MQDCMEALLGASFATGGIDMALHAGTVLG------VSFGGPTPWNIRYGLLMPKSEPSPL 1114

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHA------------------SVQEFYCYQNLYKHLQH 1295
               ++  +GY F    LL EA+TH                   ++ +    + LYK    
Sbjct: 1115 FLTLQEALGYRFEHGQLLLEAVTHPSFGSADSSSYQRLEFLGDALIDMVVTEYLYKKFPE 1174

Query: 1296 --------------CSTLLLS---------------------QITEYVKSFPKPGETTD- 1319
                          C T L S                      I  YV   P   E T+ 
Sbjct: 1175 ATSGQLSWARSRAVCGTALASLAVNRLGLHKLLLINNVELSIAIGRYV---PILEEITNE 1231

Query: 1320 ----SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--P 1373
                 G     PKAL D+ ES++GA+ +D   N D+   + + ++  ++   + +LP  P
Sbjct: 1232 EIILDGWKHDPPKALSDVFESVMGALFVDCDYNYDKAAAVIEMVMEDLIGALRPDLPRDP 1291

Query: 1374 LRELI 1378
            + +L+
Sbjct: 1292 VSQLM 1296


>gi|327297344|ref|XP_003233366.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892]
 gi|326464672|gb|EGD90125.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892]
          Length = 1519

 Score =  248 bits (633), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 194/644 (30%), Positives = 314/644 (48%), Gaps = 51/644 (7%)

Query: 41  SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFK-KLI 96
           SI   PR YQL++FE +K +N IAVLETG+GKT+IAV+L+K + +     +S G   ++ 
Sbjct: 106 SIIHDPREYQLELFEKSKEKNIIAVLETGSGKTLIAVLLLKHVIEQELTDRSLGLPPRIS 165

Query: 97  IFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
            FL  +V LV+QQ  V++ +   +++++ GA   D W+ + W+    +N V+V T ++L 
Sbjct: 166 FFLVDSVTLVYQQAAVLQNNIPQKIDKFCGAMQTDLWNKETWEGHFKRNMVIVCTAEVLH 225

Query: 157 DALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-DNKPKVFGMTASPVVRKG 215
             L  +F+ +D +  ++ DE HHA   HPY +I+K+FY K  + KPK+FGMTASP     
Sbjct: 226 QCLLHSFIQIDQINLLIFDEAHHAKKEHPYARIIKDFYLKEPERKPKIFGMTASP----- 280

Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKF-CGSDLKGKL 274
           V + ++  G    LE+ LDSQ+ T  +   +   V    E    YD+ +    + L  KL
Sbjct: 281 VDAKVEVVGAAKTLEAMLDSQITTASNPALLRQSVTRPTEEIWEYDRLELPFETPLYRKL 340

Query: 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334
              +      L K+       +K   +   +L    SD+     YCL E  L        
Sbjct: 341 RQKFGDIKV-LEKI-------FKFSRETSSSLGSWCSDWIWS--YCLSEETLPKLEARSN 390

Query: 335 ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGY 394
             L K +  Q  C+   +   +    ++E  H  G   P+A+   L      S+ V L  
Sbjct: 391 RPLMKSIPNQPSCDTEAERIREAGAIIKE--HEFGD--PVANPELL------SRKVLLLR 440

Query: 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP---FLTHLTVAYLTGS 451
                         F ++    CI+F  +   A+++    KK+       +L V   +G 
Sbjct: 441 DQLL--------RRFKENPDTRCIVFTAQRHTARILRDLFKKIGSQYIRPNLLVGVRSGG 492

Query: 452 TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
                 ++ + Q   + +FR G++N LFAT V EEG+ + +C+ ++RFDL  T+  YIQS
Sbjct: 493 DKIGLDISFREQFLNVIAFRKGEINCLFATSVAEEGLDIQDCNLIVRFDLYSTLIQYIQS 552

Query: 512 RGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYV---- 567
           RGRAR   S F  M+ER NL     + ++ RSE  +T    S  PE   LK    +    
Sbjct: 553 RGRARHMESTFAHMVERNNLMHETAVEEVRRSEEVLTRFCKSL-PEDRLLKGTGDIDMMI 611

Query: 568 ----KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELT 623
               + KSY ++STGA +T  SS+ ++  Y   L  +K  + +  +     + A+ CE  
Sbjct: 612 EKDRQQKSYTIKSTGAKLTYPSSLAVLAHYASTLQYEKELSTQVSYIIHPKDGAFICETI 671

Query: 624 LPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
           LP  +P +  +G ++  K L+KQ    E C  L +   L+++ +
Sbjct: 672 LPEKSPIRGCMGKSASRKLLAKQSAAFETCLLLRKNRLLDEYFI 715



 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 162/448 (36%), Gaps = 114/448 (25%)

Query: 997  NTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFH 1056
            N K P +  ++  E L    + + +   +++ P+++ R+ES ++A +      C +    
Sbjct: 983  NPKSPPVDYYVCAEALKISAISVPLATQIFVFPAMIWRMESYLIALEA-----CENLQLK 1037

Query: 1057 IPSSLILEALTTLG-CCESFSME-------------RLELLGDSVLKYAVSCHLFLTYPK 1102
            IP  L LEALT      E   ME             RLE LGD  LK A S  LF   P 
Sbjct: 1038 IPPELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPD 1097

Query: 1103 KHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVD 1162
              E     +R   +CN  L     + ++  +IR  +F  R W   G   L+      G D
Sbjct: 1098 NDEYDYHVKRMLLICNQNLFNNAINLEIFKFIRSRSFSRRAWYPEGLTLLK------GKD 1151

Query: 1163 TLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL-----IAA 1217
              E P                  +     +  KTIAD  EALIGA  + GG      +A 
Sbjct: 1152 KKEGP------------------NGPEHALADKTIADVCEALIGASLLAGGPDHKFDMAT 1193

Query: 1218 LYMMKWLGIDADLEVSLVDDCITRASLRSY------VPRINEIKDIESKIGYEFTVKFLL 1271
              +  ++  D D  V    D     SL +Y         I+    I+SK+GY F    LL
Sbjct: 1194 KAVTVFVNSD-DHRVERWADYSRLYSLPNYQTASASASEIDVANQIQSKLGYCFKYPKLL 1252

Query: 1272 QEAITHASVQEFY----CYQ---------------------------------------- 1287
            + A  H S    +    CYQ                                        
Sbjct: 1253 RSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSN 1312

Query: 1288 ----------NLYKHLQHCSTLLLSQITEYVKSFPK-----PGETTDSGPSMKAPKALGD 1332
                      NL+ HL H S  L  QIT Y +          G       + + PK L D
Sbjct: 1313 KFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEGNLEAWTYTNEPPKCLPD 1372

Query: 1333 LLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
            ++E+ +GA+ +D+  N D V   F+  +
Sbjct: 1373 IVEAYLGAIFVDSNFNFDVVDDFFRKFI 1400


>gi|326920976|ref|XP_003206741.1| PREDICTED: endoribonuclease Dicer-like [Meleagris gallopavo]
          Length = 1921

 Score =  248 bits (633), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 211/731 (28%), Positives = 346/731 (47%), Gaps = 99/731 (13%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  K  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +  + W  + W +E +K+ VLVMT  + L  LR 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMK--EFYHKSDNKPKVFGMTASPVVRKGVSSA 219
            +LSL  +  +V DECH A  +HPY +IMK  E Y      P++ G+TAS      ++  
Sbjct: 162 GYLSLSNINLLVFDECHLAIQDHPYREIMKICEDYPSC---PRILGLTAS-----ILNGK 213

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG-----SDLKGKL 274
            D      +++          E  T++ V      + C        CG     S L G+L
Sbjct: 214 CDPAELEEKIKKLEKILKSNAETATDLVVLDRYTSQPCEIVVD---CGPYTDKSGLYGRL 270

Query: 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAY 330
                + D +L  L    ++ +    D     ++ LSD  A ++    +C D++  +   
Sbjct: 271 ---LRELDEALHFLNDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVR 327

Query: 331 EAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV 390
           E     L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K +
Sbjct: 328 E-----LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVI 378

Query: 391 DLGYISTKL--HELLQL-------------FLSFGKS----------------------- 412
            L  I  K   +E  Q              ++S+  S                       
Sbjct: 379 KLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPF 438

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV----- 462
           T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K      
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEF 498

Query: 463 --QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
             Q+EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558

Query: 521 QFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIVES 576
            +I++ +   +K   +     ++   +     S+  +   ++    V        Y++ +
Sbjct: 559 NYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTNEMETEPIVDDDDVFPPYVLRT 618

Query: 577 TGAS--VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKS-AEEAYECELTLPSNAPFQ-T 632
              S  VT ++++  I+RYC  LPSD +    P  K +   +  +   L LP N+P + +
Sbjct: 619 DENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLPINSPLRAS 678

Query: 633 IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG 688
           IVGP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG
Sbjct: 679 IVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPG 738

Query: 689 -AGTTKRKELH 698
             G+TKR++ +
Sbjct: 739 RPGSTKRRQCY 749



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1297 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1356

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1150
            L++LG  + L   +  S FDP   W+ PG +
Sbjct: 1357 LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYI 1387



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1804 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1863

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1864 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1915

Query: 1441 KRI 1443
             ++
Sbjct: 1916 PQV 1918



 Score = 44.3 bits (103), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|189441606|gb|AAI67373.1| dicer1 protein [Xenopus (Silurana) tropicalis]
          Length = 811

 Score =  248 bits (632), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 215/731 (29%), Positives = 344/731 (47%), Gaps = 98/731 (13%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L +G+GKT IAV+L K+++  I+ +  K  K  +FL  
Sbjct: 32  YTPRKYQVELLEAALDHNTIVCLNSGSGKTFIAVLLSKELSYQIRGDFSKNTKRTVFLVN 91

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +   V QQ   +R HTD +V EY   +    W  + W  E   + VLVMT  I L+ L+ 
Sbjct: 92  SEKQVSQQVSAVRTHTDLKVGEYSDQEKTQCWAKERWYLEFETHQVLVMTCHIFLNVLKS 151

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
             +SL  +  +V DECH A  +HPY +IMK         P++ G+TAS  +  G     D
Sbjct: 152 GNVSLSNINLLVFDECHLAIQDHPYREIMK-ICESCQPCPRILGLTAS--ILNGKCDPRD 208

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V    A + C        CG   D  G  +   +
Sbjct: 209 LEEKIQKLEEILRSNA---ETATDLVVLDRYASQPCEIVLD---CGPYIDKSGLYQRLLN 262

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + D +L+ L    ++ +    D     ++ LSD    +L    +C D++  +   E    
Sbjct: 263 ELDEALNFLIDCNISTHSKERDSTLISKQILSDCQTVLLVLGPWCADKVAGMMVRE---- 318

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF----LDFGFDYSKAVD 391
            L+K +K ++E E++R+  L    F + +L  I +   L ++ F    LD  F   K + 
Sbjct: 319 -LQKYIKHEQE-ELHRKFLL----FTDTILRKIHA---LCEEHFSPASLDMKFVTPKVIK 369

Query: 392 LGYISTKL--HELLQL-------------FLSFGKS------------------------ 412
           L  I  K   +E  Q              ++S+  S                        
Sbjct: 370 LLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDEDEEIEEKEKTETSFPSPF 429

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV----- 462
           T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K      
Sbjct: 430 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEF 489

Query: 463 --QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
             Q+EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S
Sbjct: 490 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKGRARAPIS 549

Query: 521 QFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIVES 576
            +I++ +   +K   +     ++   +     S+  +    ++   V        Y++  
Sbjct: 550 NYIMLADSDKIKAFEEDLKTYKAIEKILRNKCSKSIDCGNTESEPIVDDDEIFPPYVLRQ 609

Query: 577 TGAS--VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQT- 632
              S  VT ++++  I+RYC  LPSD +    P  K +   +  Y   L LP N+P +  
Sbjct: 610 DDGSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTREFPDGLYRSTLYLPINSPLRAP 669

Query: 633 IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG 688
           IVGP      L+ + V L  C+KLH++G L+DHL+P    +V+   E +L  ++  S+PG
Sbjct: 670 IVGPPMNCGRLADRAVALICCKKLHEIGELDDHLMPVGKETVKYEEELDLHDEEETSVPG 729

Query: 689 -AGTTKRKELH 698
             G+TKR++ +
Sbjct: 730 RPGSTKRRQCY 740


>gi|254281220|ref|NP_001123390.2| endoribonuclease Dicer [Xenopus (Silurana) tropicalis]
 gi|238064965|sp|B3DLA6.2|DICER_XENTR RecName: Full=Endoribonuclease Dicer
 gi|169261418|gb|ACA52289.1| endoribonuclease [Xenopus (Silurana) tropicalis]
          Length = 1893

 Score =  247 bits (631), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 215/731 (29%), Positives = 344/731 (47%), Gaps = 98/731 (13%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L +G+GKT IAV+L K+++  I+ +  K  K  +FL  
Sbjct: 32  YTPRKYQVELLEAALDHNTIVCLNSGSGKTFIAVLLSKELSYQIRGDFSKNTKRTVFLVN 91

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +   V QQ   +R HTD +V EY   +    W  + W  E   + VLVMT  I L+ L+ 
Sbjct: 92  SEKQVSQQVSAVRTHTDLKVGEYSDQEKTQCWAKERWYLEFETHQVLVMTCHIFLNVLKS 151

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
             +SL  +  +V DECH A  +HPY +IMK         P++ G+TAS  +  G     D
Sbjct: 152 GNVSLSNINLLVFDECHLAIQDHPYREIMK-ICESCQPCPRILGLTAS--ILNGKCDPRD 208

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V    A + C        CG   D  G  +   +
Sbjct: 209 LEEKIQKLEEILRSNA---ETATDLVVLDRYASQPCEIVLD---CGPYIDKSGLYQRLLN 262

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + D +L+ L    ++ +    D     ++ LSD    +L    +C D++  +   E    
Sbjct: 263 ELDEALNFLIDCNISTHSKERDSTLISKQILSDCQTVLLVLGPWCADKVAGMMVRE---- 318

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF----LDFGFDYSKAVD 391
            L+K +K ++E E++R+  L    F + +L  I +   L ++ F    LD  F   K + 
Sbjct: 319 -LQKYIKHEQE-ELHRKFLL----FTDTILRKIHA---LCEEHFSPASLDMKFVTPKVIK 369

Query: 392 LGYISTKL--HELLQL-------------FLSFGKS------------------------ 412
           L  I  K   +E  Q              ++S+  S                        
Sbjct: 370 LLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDEDEEIEEKEKTETSFPSPF 429

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV----- 462
           T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K      
Sbjct: 430 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEF 489

Query: 463 --QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
             Q+EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S
Sbjct: 490 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKGRARAPIS 549

Query: 521 QFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIVES 576
            +I++ +   +K   +     ++   +     S+  +    ++   V        Y++  
Sbjct: 550 NYIMLADSDKIKAFEEDLKTYKAIEKILRNKCSKSIDCGNTESEPIVDDDEIFPPYVLRQ 609

Query: 577 TGAS--VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQT- 632
              S  VT ++++  I+RYC  LPSD +    P  K +   +  Y   L LP N+P +  
Sbjct: 610 DDGSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTREFPDGLYRSTLYLPINSPLRAP 669

Query: 633 IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG 688
           IVGP      L+ + V L  C+KLH++G L+DHL+P    +V+   E +L  ++  S+PG
Sbjct: 670 IVGPPMNCGRLADRAVALICCKKLHEIGELDDHLMPVGKETVKYEEELDLHDEEETSVPG 729

Query: 689 -AGTTKRKELH 698
             G+TKR++ +
Sbjct: 730 RPGSTKRRQCY 740



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1273 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1332

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1150
            L++LG  +     +  S FDP   W+ PG +
Sbjct: 1333 LYRLGKKKGSPSRMVVSIFDPPVNWLPPGYI 1363



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW ++ P++ P++      +P  P+REL+E+    
Sbjct: 1776 PKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKFSANVPRSPVRELLEMEPET 1835

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1836 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1887

Query: 1441 KRI 1443
             ++
Sbjct: 1888 SQV 1890



 Score = 45.1 bits (105), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 949  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1008

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     VP S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1009 SSAEKRKAKWESLQNKQILVPELCAIHPVPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1067


>gi|351701180|gb|EHB04099.1| Endoribonuclease Dicer [Heterocephalus glaber]
          Length = 1935

 Score =  247 bits (631), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 206/728 (28%), Positives = 345/728 (47%), Gaps = 93/728 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS----NGFKKLIIFL 99
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+     NG  K  +FL
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSPNG--KRTVFL 99

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
             + + V QQ   +R H+D +V EY   +    W  + W +E   + VL+MT  + L+ L
Sbjct: 100 VNSANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWNQEFTMHQVLIMTCSVALNVL 159

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSA 219
           +  +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G    
Sbjct: 160 KNGYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSSPRILGLTAS--ILNGKCDP 216

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVS 277
            + E +I +LE  L S     E  T++ V      + C        CG  +D  G  E  
Sbjct: 217 EELEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERL 270

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAV 333
             + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E  
Sbjct: 271 LMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE-- 328

Query: 334 KICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393
              L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L 
Sbjct: 329 ---LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLL 381

Query: 394 YISTKL--HELLQL-------------FLSFGKS-----------------------TQV 415
            I  K   +E  Q              ++S+  S                       T +
Sbjct: 382 EILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEIEEKEKPETNFPSPFTNI 441

Query: 416 LC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------Q 463
           LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q
Sbjct: 442 LCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQ 501

Query: 464 KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
           +EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I
Sbjct: 502 EEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYI 561

Query: 524 LMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEA----CFLKACTYVKTKSYIV--EST 577
           ++ +   +K   +     ++   +     S+  +                  Y++  +  
Sbjct: 562 MLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDVDSVVDDDDVFPPYVLRPDDG 621

Query: 578 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVG 635
           G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVG
Sbjct: 622 GPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTQELPDGTFYSTLYLPINSPLRASIVG 681

Query: 636 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AG 690
           P      L++++V L  CEKLH++G L++HL+P    +V+   E +L  ++  ++PG  G
Sbjct: 682 PPMSCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETNVPGRPG 741

Query: 691 TTKRKELH 698
           +TKR++ +
Sbjct: 742 STKRRQCY 749



 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 3/124 (2%)

Query: 1028 LPSVMQRLESL--MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGD 1085
            +P      +SL   + S+    +   SR       LIL+ALT     + F++ERLE+LGD
Sbjct: 1261 MPGTTDAFQSLKDRMDSEQSPSLGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1320

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RW 1144
            S LK+A++ +LF TYP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W
Sbjct: 1321 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1380

Query: 1145 VAPG 1148
            + PG
Sbjct: 1381 LPPG 1384



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1818 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1877

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1878 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1929

Query: 1441 KRI 1443
             ++
Sbjct: 1930 PQV 1932



 Score = 44.3 bits (103), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|94957752|ref|NP_001035555.1| endoribonuclease Dicer [Gallus gallus]
 gi|257051054|sp|Q25BN1.3|DICER_CHICK RecName: Full=Endoribonuclease Dicer
 gi|90074858|dbj|BAE87103.1| Dicer protein [Gallus gallus]
          Length = 1921

 Score =  247 bits (631), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 217/740 (29%), Positives = 350/740 (47%), Gaps = 117/740 (15%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  K  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +  + W  + W +E +K+ VLVMT  + L  LR 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMK--EFYHKSDNKPKVFGMTASPVVRKGVSSA 219
            +LSL  +  +V DECH A  +HPY +IMK  E Y      P++ G+TAS      ++  
Sbjct: 162 EYLSLSNINLLVFDECHLAIQDHPYREIMKICEDYPSC---PRILGLTAS-----ILNGK 213

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG-----SDLKGKL 274
            D      +++          E  T++ V      + C        CG     S L G+L
Sbjct: 214 CDPAELEEKIKKLEKILKSNAETATDLVVLDRYTSQPCEIVVD---CGPYTDKSGLYGRL 270

Query: 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAY 330
                + D +L  L    ++ +    D     ++ LSD  A ++    +C D++  +   
Sbjct: 271 ---LRELDEALHFLNDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVR 327

Query: 331 EAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV 390
           E     L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K +
Sbjct: 328 E-----LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVI 378

Query: 391 DLGYISTKL--HELLQL-------------FLSFGKS----------------------- 412
            L  I  K   +E  Q              ++S+  S                       
Sbjct: 379 KLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPF 438

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV----- 462
           T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K      
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEF 498

Query: 463 --QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
             Q+EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558

Query: 521 QFILMLERG-------NLKQRNKLFDIIRS------ERSVTDTALSRDPEACFLKACTYV 567
            +I++ +         +LK    +  I+R+      + S T+T    D +  F       
Sbjct: 559 NYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDDDDVF------- 611

Query: 568 KTKSYIVESTGAS--VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKS-AEEAYECELTL 624
               Y++ +   S  VT ++++  I+RYC  LPSD +    P  K +   +  +   L L
Sbjct: 612 --PPYVLRTDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYL 669

Query: 625 PSNAPFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLI 679
           P N+P + +IVGP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L 
Sbjct: 670 PINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLH 729

Query: 680 SKKNESLPG-AGTTKRKELH 698
            ++  S+PG  G+TKR++ +
Sbjct: 730 DEEETSVPGRPGSTKRRQCY 749



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1297 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1356

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1150
            L++LG  + L   +  S FDP   W+ PG +
Sbjct: 1357 LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYI 1387



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1804 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1863

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1864 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1915

Query: 1441 KRI 1443
             ++
Sbjct: 1916 PQV 1918



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|159126799|gb|EDP51915.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163]
          Length = 1546

 Score =  247 bits (631), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 185/648 (28%), Positives = 316/648 (48%), Gaps = 74/648 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD-IAQAI--KSNG------FKKLI 96
           PR YQ+++FE AK +NTIAVL+TG+GKT+IAV+L++  I   +  ++NG      F  + 
Sbjct: 126 PREYQIELFERAKTQNTIAVLDTGSGKTLIAVLLLRHTILNELDDRANGKTHRVSFFLVF 185

Query: 97  IFLA-----------PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN 145
           + LA            +V L +QQ  V+R + D  V  ++GA G D WD + W K + +N
Sbjct: 186 VLLALGRCILTWCKVDSVTLAYQQAAVVRNNIDQNVAHFFGAMGTDLWDKRTWDKHLQRN 245

Query: 146 DVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKV 203
            V+V T +IL   L  +++ +D +  ++ DE HHA  +HPY +I+++ Y K+    +P+V
Sbjct: 246 MVIVCTAEILNQCLLNSYVRMDQINLLIFDEAHHAKKDHPYARIIRDSYFKAQPSQRPRV 305

Query: 204 FGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQS 263
           FGMTASP+  KG  +          LE+ LDS++ T    T +   V    E    Y+  
Sbjct: 306 FGMTASPIDTKGDITEAATYVLSRRLETFLDSRIATTSKITLLREVVSRPIEKVWAYN-- 363

Query: 264 KFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
                    +LE  ++                YK MD ++  + K L   +        E
Sbjct: 364 ---------RLEPPFAT-------------ELYKLMDTRYGNI-KVLEGVYRFAWNASSE 400

Query: 324 LGLICAYEAVKICLEKVLKAQEECEIYR---QSSLQCKY--FLEEVLHVIGSALPLADKI 378
           LG  C+  A    L   +  + E  I +    ++++ ++    ++++ +  ++  + +  
Sbjct: 401 LGKWCSDRAWWHALADDVLPKLEGNINKLIESNTMKAEHGAVFKDIIRIREASETVKNYF 460

Query: 379 FLDFGFDYSKAVDLGYISTKLHEL-LQLFLSFGKSTQVLCIIFVERIIAAKVVERF--VK 435
           F D           G +S K+  L ++L   F  +T   CI+F ++   AK++     V 
Sbjct: 461 FTDPELP-------GELSPKVQRLRMELSKHFNDTTGTKCIVFTQKRYTAKILNELFTVL 513

Query: 436 KVPFLT-HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
            +P L   + +    G    ++ +T + Q   L  FR G++N LFAT V EEG+ +P+C+
Sbjct: 514 NIPNLRPGVLIGVRPGDIGGMN-ITFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCN 572

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSR 554
            VIRFDL +T+  Y+QSRGRAR   S + +M+E+ N +   +L + IR   ++       
Sbjct: 573 LVIRFDLYRTLIQYVQSRGRARHCTSTYAIMVEKDNAEHEGRLKE-IREAENIMRRFCEI 631

Query: 555 DPEACFLKACTY---------VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
            PE   L    +            +++ V+STGA +T  S++ ++ RY   L  +K   P
Sbjct: 632 LPEDRILHGNDHDLDSFLQEEEGRRTFTVKSTGAKLTYHSAIAILARYASSLQYEKETVP 691

Query: 606 KPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEAC 653
           +  +    A  AY CE+ LP  +P + + G  +  K ++K+    + C
Sbjct: 692 QVTYVVTIASNAYVCEVILPEKSPIRGLTGSPAMRKAVAKRSAAFDTC 739



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 153/428 (35%), Gaps = 118/428 (27%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P S+V +    P+++ RL+S ++A +      C      I     LEA T         
Sbjct: 1041 LPPSIVSTCLAFPAIISRLDSYLIALEA-----CDELELVIRPDFALEAFTKDSDNTEEH 1095

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G  +++  ERLE LGD  LK A S  LF   P   E      R   +CN  
Sbjct: 1096 RGQQIHFQRGMGKNY--ERLEFLGDCFLKMATSIALFSQNPNDDEFDYHVNRMCLICNKN 1153

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L      +++  YIR   F    W  P  L+L               L GK     TK++
Sbjct: 1154 LFNTAIKKQIYRYIRSRGFSRHIWY-PDGLTL---------------LHGK--DHSTKLL 1195

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG----LIAALYMMKWLGIDADLEVSLVD 1236
                   G   +G KTIAD  EALIGA  + GG       A   +  L       VS   
Sbjct: 1196 -----SEGKHALGEKTIADVCEALIGASLLSGGPEHRFDMATKAVSALVDSPSHRVSCWK 1250

Query: 1237 DCITRASLRSYVPRINE------IKDIESKIGYEFTVKFLLQEAITHASVQEFY-----C 1285
            + IT  +L  Y    +        + +E ++GY FT   LL  AITH S+   +     C
Sbjct: 1251 EYITLYTLPKYQTEKHRGSEDDLARHVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPC 1310

Query: 1286 YQNL--------------------------------------------------YKHLQH 1295
            YQ L                                                  ++ +  
Sbjct: 1311 YQRLEFLGDSLLDMVCVEDLFRRFPDRDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMA 1370

Query: 1296 CSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRI 1355
             S  L +QIT YV       E  ++  +      L D++E+ +GA+ +D+K +   +   
Sbjct: 1371 FSNPLQAQITHYV-------EEIETAQAESQGACLPDMVEAYLGAIFVDSKFDFQVIEAF 1423

Query: 1356 FKPILSPI 1363
            F+  + P 
Sbjct: 1424 FERQIKPF 1431


>gi|212529276|ref|XP_002144795.1| RNA helicase/RNAse III, putative [Talaromyces marneffei ATCC 18224]
 gi|210074193|gb|EEA28280.1| RNA helicase/RNAse III, putative [Talaromyces marneffei ATCC 18224]
          Length = 1497

 Score =  247 bits (631), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 242/872 (27%), Positives = 389/872 (44%), Gaps = 122/872 (13%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFKKLI-IFLAP 101
           PR YQ++++E AK  NTIAVL TG+GKT+IA++L+K I +     +  G +  I  FL  
Sbjct: 83  PRDYQIELYERAKEENTIAVLATGSGKTLIAILLLKHIIRNELIDRERGQRHRISFFLVD 142

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V LV QQ  V++ + D  V   +G  G+D W+   W     KN V+V T  I++  L +
Sbjct: 143 SVTLVFQQTAVLKNNLDQAVASLFGDMGLDLWNEDVWMDYFTKNMVIVCTADIVVQCLLQ 202

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSA 219
           ++++++ +  ++ DE HHA   H Y +IM+E Y K+  + +P++FGMTASP+      + 
Sbjct: 203 SYITMEDINLLIFDEAHHAKKEHAYARIMREGYLKAKPECRPRIFGMTASPL-----DAK 257

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEM-EVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
            D      ELES L S++ T  + T + +V     +E  R+    K   + L   LE  +
Sbjct: 258 RDPVKAAQELESLLHSKIATASNLTLLRQVVGRPEEEQWRYPALKKPFKTALYQILEKQY 317

Query: 279 SKFDA-----SLSKLQGSQLNCY-KDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
              +      + S    S L  +  D         K L  +H KI      LG   A + 
Sbjct: 318 GDMECLKSIFTFSFEASSYLGPWCADHVWSGAISEKMLPRFHGKITTAWKRLGGETAMK- 376

Query: 333 VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDL 392
                    K + E    RQ S                      ++  ++G     A+ L
Sbjct: 377 ---------KTETEISRLRQMS----------------------ELITNYGMPSGPAI-L 404

Query: 393 GYISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVKK--VPFLT-HLTVAYL 448
             +S K+  L Q L   F ++    CI+F ++   AK++E   K+  VP +   + V   
Sbjct: 405 EQLSEKVRVLYQHLTKRFEEAPNTKCIVFTKQRNTAKLLEVVFKQLSVPHMRPGVLVGIG 464

Query: 449 TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
           +G    +++  P+  K  +E FR G++N LFAT V EEG+ +P+C+ V+RFDL +T+  Y
Sbjct: 465 SGDICGMNSTYPQQFKATIE-FRKGELNCLFATSVAEEGLDIPDCNLVVRFDLYETLIQY 523

Query: 509 IQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVT--------DTALSRDPEACF 560
           +QSRGRAR+  S +  M+E  N++   KL ++ ++E  +         D  L  + +A  
Sbjct: 524 VQSRGRARRSESIYAHMIEIDNMEHETKLDEVHQTEELMRRFCEALPEDRLLGNNNDALS 583

Query: 561 LKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYT-PKPIFKYKSAEEAYE 619
                  + + Y +ESTGA++T  S++ ++ RY   L  +   T   P +     +  YE
Sbjct: 584 AILEKDSRKRQYKIESTGATLTYHSAIMVLARYASSLQYENNETGSHPHYVTTQIKGMYE 643

Query: 620 CELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLI 679
           CE+ LP  +P + ++G     K+L+KQ    E C  L   G L+            NN +
Sbjct: 644 CEVILPKGSPIRGLMGKPEPRKSLAKQSAAFETCILLRNNGLLD------------NNFV 691

Query: 680 SKKNESLPGAGTTKRKELHGTTPIRALSGR---WGEKC-GVILHAY----KFNFACSIVT 731
           S     LP     K       T   ++  +   W + C GV    Y     F+ A  +  
Sbjct: 692 STYQRRLPAMRNAKLSITSKKTTQYSMIVKPSFWTQACDGVPCQLYLTLIMFSPAEPLQN 751

Query: 732 EIYSGFVLLIESELDNDVGNFELELYL---VSKTVKATVSSSGQVHLDADQMSKAKCFQE 788
           E  S  VLL    L       E  +YL   V  TV+ T+S S  + +  D +     F  
Sbjct: 752 ERRS-MVLLTRKRLPQCP---EFPIYLEEDVETTVR-TISVSKALSISPDDLELMSNFTL 806

Query: 789 LFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEI-VNTFGDG---SWRI 844
             F  L+ K++               E N    P   Y L+P    +  +G+G   S  I
Sbjct: 807 RIFQDLYNKIY---------------EMNQEVMP---YWLIPTASDIGEYGEGINPSDAI 848

Query: 845 NWSGINPCASVVEFIKEKSFLGAAQCNNNGGN 876
           +W        V++F+K+   L     +  G N
Sbjct: 849 DW-------DVLQFVKDHERLDRNSVSPQGLN 873



 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 140/350 (40%), Gaps = 67/350 (19%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSR-NFHIPSSLILEALT-------- 1067
            +P +V  S +  P+++ R++S ++A +      C S     I     LEA+T        
Sbjct: 979  IPATVAASCFAFPAIITRIDSYLVAHE------CASLLGLEIQLGYALEAVTKDSDNTEE 1032

Query: 1068 --------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
                      G  +++  ERLE LGD  LK A S  LF+  P   E  L   R   +CN 
Sbjct: 1033 HRLEQIQFQRGMGKNY--ERLEFLGDCFLKMATSISLFVGSPNDQEFDLHVNRMTLICNR 1090

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKV 1179
             L     +RK+  YIR   F  R W   G   LR    E   D       G         
Sbjct: 1091 NLFNTAKERKIYEYIRSKGFSRRNWYPEGMKLLRGKANE---DKASTHTHG--------- 1138

Query: 1180 VVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYM-MKWLG--IDADLE-VSLV 1235
                        +G KTIAD  EALIGA  + GG +    M +K +   +++DL  V   
Sbjct: 1139 ------------LGEKTIADVCEALIGASLLSGGPVNRFDMAVKAVTRLVNSDLHNVESW 1186

Query: 1236 DDCITRASLRSYVPRINEI----KD----IESKIGYEFTVKFLLQEAITHASVQEFYCYQ 1287
                +  SL SY  +I E     KD    I+ K+GY F    LL+ A TH S    +   
Sbjct: 1187 AGYSSHYSLPSY--QIKEANGFEKDLANQIDKKLGYRFKYPRLLRSAFTHPSYPTAWSIV 1244

Query: 1288 NLYKHLQHCSTLLLSQ--ITEYVKSFP--KPGETTDSGPSMKAPKALGDL 1333
              Y+ L+     LL    I    + FP   P   T+   +M + K LG L
Sbjct: 1245 PCYQRLEFLGDSLLDMVCIENLYERFPDRDPQWLTEHKMAMVSNKFLGSL 1294


>gi|189205613|ref|XP_001939141.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975234|gb|EDU41860.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1572

 Score =  247 bits (630), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 192/670 (28%), Positives = 323/670 (48%), Gaps = 90/670 (13%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK----KLIIFLAP 101
           PR YQ ++F+ AK  N IAVL+TG+GKT IA +L++ +  A   +  K    K+  FL  
Sbjct: 117 PRDYQTELFQRAKVENVIAVLDTGSGKTHIATLLLRHVLDAELEHRAKGDAPKMAFFLVD 176

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V+LV QQ +V+R   D  VE   G+ G   W  + WQ   + N V+V T ++L+  +  
Sbjct: 177 SVNLVFQQSNVLRCGLDQNVEGICGSMGASLWSRKTWQTYFDTNMVVVCTAEVLVQCMMH 236

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HKSD--NKPKVFGMTASPVVRKGVSS 218
           +F+++  +  ++ DE HHA  NHPY ++MK++Y H+ D   +P++FGMTASPV  KG+ S
Sbjct: 237 SFITMSQINLLIFDEAHHAKSNHPYARLMKDYYTHELDLSKRPRIFGMTASPVDTKGL-S 295

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD--QSKFCGSDLKGKLEV 276
           A   +   S+LE  L +++ T  + T     +    E    Y   Q +F  + L  K++ 
Sbjct: 296 ADHIKQAASDLEKLLYAKIATTTESTLASNSISRPDEEVAVYTRLQDEF-ETPLHQKIKA 354

Query: 277 ------SWSKFDASLSKLQGSQLN----------CYKDMDDKHKTLRKQLSDYHAKILYC 320
                 S+ KF  + SK  G +L            + D   +    R++L    A +   
Sbjct: 355 KFGDLPSFKKFFVA-SKHHGVELGRWASDMYWSFAFADEQSRKFQERERLKHNRANV--- 410

Query: 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
                     + V+    K+ + QE  E  +Q                            
Sbjct: 411 ---------DDDVQKWDAKLKRLQEAAEFVQQ---------------------------F 434

Query: 381 DFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL 440
           DFG       D+     KLH  L  +  + +S +  CI+FVE+   A++++     +   
Sbjct: 435 DFGKCTLSDKDVSSKVLKLHYWLHRY--YERSDEARCIVFVEQRQTARLLQLIFASLGG- 491

Query: 441 THLTVAYLTGSTTSVDALTPKVQKEVL--ESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
           ++L  + L G    +      ++ ++L    FR G++N LFAT V EEG+ +P C+ V+R
Sbjct: 492 SNLRCSVLVGVNNRISEQNISLRNQILTVAKFRRGELNCLFATSVAEEGLDIPQCNLVVR 551

Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD--TALSRDP 556
           FDL +T+ +Y+QSRGRAR  NS+++ MLE GN   R ++ D+ + E+ + +    L +D 
Sbjct: 552 FDLYRTMIAYVQSRGRARHRNSKYLHMLEDGNHDHRERIMDVKQDEQVMRNFCRDLPQDR 611

Query: 557 EAC-FLKACTYV-----KTKSYIVESTGASVTTDSSVNLIHRYCEMLPS-DKYYTPKPIF 609
           +   F K  T +     K     V   GA ++  SS+++++ +   LP  D+    +P +
Sbjct: 612 QINEFDKDGTDLLTFEDKLFPTFVTKPGAKLSYRSSLSILNHFVATLPGPDRQTMLQPTY 671

Query: 610 KYKS---------AEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVG 660
              S             + CE+ LP  +P  +I+G     K ++K     + C +L++ G
Sbjct: 672 VISSEVQRNVLDPQRRGFVCEVILPEYSPVTSIIGDVQGKKTIAKCSAAFKTCLQLYKKG 731

Query: 661 ALNDHLLPSV 670
            L+D+LLP+ 
Sbjct: 732 YLDDNLLPTT 741



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 163/419 (38%), Gaps = 86/419 (20%)

Query: 961  HPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPIS 1020
            +P QP+L +++     N L    D     KG    + T       ++ PE L+  ++   
Sbjct: 982  NPSQPVLEVEKIPFRRNHLARVED---KEKGELDDLKT-------YVCPEPLLISNLATP 1031

Query: 1021 VVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT------------- 1067
             V   Y+LP+++ R ES ++A        C   +  +  +L LEALT             
Sbjct: 1032 FVVMCYVLPAIIHRFESYLIALDA-----CGVLDLKVSPALALEALTKDSENSEEHGEEK 1086

Query: 1068 -TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL-- 1124
                     + ERLE LGD  LK A S  +F+  P ++E +   RR   +CN  L +   
Sbjct: 1087 INFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPDENEFEFHVRRMEMLCNKNLLETAI 1146

Query: 1125 ---------GTDR--KLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFF 1173
                     GT+R  KL  YIR  +F  R W   G   LR      GV+  E   D    
Sbjct: 1147 GKKKVTSVDGTERDIKLYNYIRTDSFSRRTWYPDGMKLLRGK----GVNKSED--DWLKL 1200

Query: 1174 TQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGA----YYVGGGLIAALY-----MMKWL 1224
            T +               +G K+IAD  EA IGA    +Y GG   AA +      +K  
Sbjct: 1201 THN---------------LGDKSIADVCEAFIGAAFQEHYKGGRWNAADWDETVKAVKLF 1245

Query: 1225 GIDADLEVSLVDDCITRASLRSY------VPRINEIKDIESKIGYEFTVKFLLQEAITHA 1278
                D E+S   D      +  Y         ++    IE+K  Y F    LL+ A  H 
Sbjct: 1246 ANSPDHEMSKWTDYYAAYQMPKYQIADATAAMLDMACKIEAKHPYHFKYPRLLRSAFAHP 1305

Query: 1279 SVQEFYCYQNL--YKHLQHCSTLLLSQ--ITEYVKSFP--KPGETTDSGPSMKAPKALG 1331
            S    Y Y+N+  Y+ L+     LL    IT     +P   P   T+    M + K LG
Sbjct: 1306 SYP--YIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPDKDPQWLTEHKTPMVSNKFLG 1362


>gi|410962933|ref|XP_003988023.1| PREDICTED: endoribonuclease Dicer [Felis catus]
          Length = 1893

 Score =  247 bits (630), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 208/726 (28%), Positives = 343/726 (47%), Gaps = 89/726 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+   N   K  +FL  
Sbjct: 43  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 102

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V  Q   +R H+D +V EY   +    W  + W +E  K+ VLVMT  + L+ L+ 
Sbjct: 103 SANQVAPQVSAVRTHSDLKVGEYSSLEVNAAWTKEKWNQEFTKHQVLVMTCYVALNVLKN 162

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 163 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 219

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G       
Sbjct: 220 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYGRLLL 273

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    ++      D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 274 ELEEALNFINDCNISVRSKERDSTSISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 329

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 330 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 384

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 385 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 444

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 445 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 504

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 505 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 564

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEA----CFLKACTYVKTKSYIV--ESTGA 579
            +   +K   +     ++   +     S+  +A                 Y++  +  G 
Sbjct: 565 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDAGETDVEPVVDDDDVFPPYVLRPDDGGP 624

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPT 637
            VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IVGP 
Sbjct: 625 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 684

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 685 MSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 744

Query: 693 KRKELH 698
           KR++ +
Sbjct: 745 KRRQCY 750



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  
Sbjct: 1289 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYM 1348

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1349 RSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1386



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1776 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1835

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1836 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1887

Query: 1441 KRI 1443
             ++
Sbjct: 1888 PQV 1890



 Score = 44.7 bits (104), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 956  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1015

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1016 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1074


>gi|146324173|ref|XP_753471.2| RNA helicase/RNAse III [Aspergillus fumigatus Af293]
 gi|129558032|gb|EAL91433.2| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293]
          Length = 1546

 Score =  246 bits (629), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 185/648 (28%), Positives = 316/648 (48%), Gaps = 74/648 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD-IAQAI--KSNG------FKKLI 96
           PR YQ+++FE AK +NTIAVL+TG+GKT+IAV+L++  I   +  ++NG      F  + 
Sbjct: 126 PREYQIELFERAKTQNTIAVLDTGSGKTLIAVLLLRHTILNELDDRANGKTHRVSFFLVF 185

Query: 97  IFLA-----------PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN 145
           + LA            +V L +QQ  V+R + D  V  ++GA G D WD + W K + +N
Sbjct: 186 VLLALGRCILTWCKVDSVTLAYQQAAVLRNNIDQNVAHFFGAMGTDLWDKRTWDKHLQRN 245

Query: 146 DVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKV 203
            V+V T +IL   L  +++ +D +  ++ DE HHA  +HPY +I+++ Y K+    +P+V
Sbjct: 246 MVIVCTAEILNQCLLNSYVRMDQINLLIFDEAHHAKKDHPYARIIRDSYFKAQPSQRPRV 305

Query: 204 FGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQS 263
           FGMTASP+  KG  +          LE+ LDS++ T    T +   V    E    Y+  
Sbjct: 306 FGMTASPIDTKGDITEAATYVLSRRLETFLDSRIATTSKITLLREVVSRPIEKVWAYN-- 363

Query: 264 KFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
                    +LE  ++                YK MD ++  + K L   +        E
Sbjct: 364 ---------RLEPPFAT-------------ELYKLMDTRYGNI-KVLEGVYRFAWNASSE 400

Query: 324 LGLICAYEAVKICLEKVLKAQEECEIYR---QSSLQCKY--FLEEVLHVIGSALPLADKI 378
           LG  C+  A    L   +  + E  I +    ++++ ++    ++++ +  ++  + +  
Sbjct: 401 LGKWCSDRAWWHALADDVLPKLEGNINKLIESNTMKAEHGAVFKDIIRIREASETVKNYF 460

Query: 379 FLDFGFDYSKAVDLGYISTKLHEL-LQLFLSFGKSTQVLCIIFVERIIAAKVVERF--VK 435
           F D           G +S K+  L ++L   F  +T   CI+F ++   AK++     V 
Sbjct: 461 FTDPELP-------GELSPKVQRLRMELSKHFNDTTGTKCIVFTQKRYTAKILNELFTVL 513

Query: 436 KVPFLT-HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
            +P L   + +    G    ++ +T + Q   L  FR G++N LFAT V EEG+ +P+C+
Sbjct: 514 NIPNLRPGVLIGVRPGDIGGMN-ITFRQQFLALVKFRTGEINCLFATSVAEEGLDIPDCN 572

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSR 554
            VIRFDL +T+  Y+QSRGRAR   S + +M+E+ N +   +L + IR   ++       
Sbjct: 573 LVIRFDLYRTLIQYVQSRGRARHCTSTYAIMVEKDNAEHEGRLKE-IREAENIMRRFCEI 631

Query: 555 DPEACFLKACTY---------VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
            PE   L    +            +++ V+STGA +T  S++ ++ RY   L  +K   P
Sbjct: 632 LPEDRILHGNDHDLDSFLQEEEGRRTFTVKSTGAKLTYHSAIAILARYASSLQYEKETVP 691

Query: 606 KPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEAC 653
           +  +    A  AY CE+ LP  +P + + G  +  K ++K+    + C
Sbjct: 692 QVTYVVTIASNAYVCEVILPEKSPIRGLTGSPAMRKAVAKRSAAFDTC 739



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 153/428 (35%), Gaps = 118/428 (27%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P S+V +    P+++ RL+S ++A +      C      I     LEA T         
Sbjct: 1041 LPPSIVSTCLAFPAIISRLDSYLIALEA-----CDELELVIRPDFALEAFTKDSDNTEEH 1095

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G  +++  ERLE LGD  LK A S  LF   P   E      R   +CN  
Sbjct: 1096 RGQQIHFQRGMGKNY--ERLEFLGDCFLKMATSIALFSQNPNDDEFDYHVNRMCLICNKN 1153

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L      +++  YIR   F    W  P  L+L               L GK     TK++
Sbjct: 1154 LFNTAIKKQIYRYIRSRGFSRHIWY-PDGLTL---------------LHGK--DHSTKLL 1195

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG----LIAALYMMKWLGIDADLEVSLVD 1236
                   G   +G KTIAD  EALIGA  + GG       A   +  L       VS   
Sbjct: 1196 -----SEGKHALGEKTIADVCEALIGASLLSGGPEHRFDMATKAVSALVDSPSHRVSCWK 1250

Query: 1237 DCITRASLRSYVPRINE------IKDIESKIGYEFTVKFLLQEAITHASVQEFY-----C 1285
            + IT  +L  Y    +        + +E ++GY FT   LL  AITH S+   +     C
Sbjct: 1251 EYITLYTLPKYQTEKHRGSEDDLARHVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPC 1310

Query: 1286 YQNL--------------------------------------------------YKHLQH 1295
            YQ L                                                  ++ +  
Sbjct: 1311 YQRLEFLGDSLLDMVCVEDLFRRFPDRDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMA 1370

Query: 1296 CSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRI 1355
             S  L +QIT YV       E  ++  +      L D++E+ +GA+ +D+K +   +   
Sbjct: 1371 FSNPLQAQITHYV-------EEIETAQAESQGACLPDMVEAYLGAIFVDSKFDFQVIEAF 1423

Query: 1356 FKPILSPI 1363
            F+  + P 
Sbjct: 1424 FERQIKPF 1431


>gi|400595165|gb|EJP62972.1| RNase3 domain-containing protein [Beauveria bassiana ARSEF 2860]
          Length = 1465

 Score =  246 bits (627), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 221/796 (27%), Positives = 361/796 (45%), Gaps = 91/796 (11%)

Query: 33  DGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA----IK 88
           D  ++  +++   PR YQ ++FE AK +NTI VL+TG+GKT+IA+ML++ + +       
Sbjct: 50  DAAAAEVSALMATPREYQNELFERAKSKNTIVVLDTGSGKTLIAIMLLRHVLEQELEDRA 109

Query: 89  SNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVL 148
           + G +K   F+   V L  QQY VI     F V ++YG     E     W  + ++N ++
Sbjct: 110 NGGTRKTAFFVVDKVALCMQQYQVIHATLPFSVTKFYGELQPLEQSQTHWDAQFDENMII 169

Query: 149 VMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN-KPKVFGMT 207
           V T Q+LLD L   F+++  +  ++ DE HHA   HPY  IMK +Y + +N KP++ G+T
Sbjct: 170 VCTAQMLLDCLSHGFINMRQINLLIFDEVHHAKKEHPYAAIMKRYYPRDNNVKPRILGLT 229

Query: 208 ASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKT-EMEVFVPSAKESCRFYDQSKFC 266
           ASPV     +  +D E  + +LES + S++ T+ D   E        KE  R Y   K  
Sbjct: 230 ASPV----DTGTLDIETAVEKLESLMCSEIATVSDAVLEAGWTKREQKEKVRLYKPLKDV 285

Query: 267 GSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGL 326
             D   KL     +F   + +L  S                     + AKI      LG 
Sbjct: 286 -KDCYTKLARDIDEFAQHVPQLAAS-------------------VQFSAKI---GSALGP 322

Query: 327 ICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
            CA    +I L   L      ++ +       Y   +       AL     I     F  
Sbjct: 323 WCADRFWQILLTDDLMRNMAVQLGKGKKTNFSY---DRYDAASGALESLRPIIDHHRF-A 378

Query: 387 SKAVDLGYISTKLHELLQ-LFLSFGKSTQVLCIIFV-ERIIAAKVVERFVKKVPFLTHLT 444
             + D   IS+KL  L + L  +F + ++  C++FV E+ +A  + + F +       + 
Sbjct: 379 PASTDEDAISSKLVVLRETLCAAFEEESETKCLVFVDEQFMAMILADYFSQPGTAPQGMI 438

Query: 445 VAYLTGSTTSVD----ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
             ++ G   S      +L  ++QK  L  F+ G  N LFAT V EEG+ +P C  VIRFD
Sbjct: 439 ADFMIGLAKSFAHANLSLRERMQK--LNDFKHGNTNCLFATSVAEEGLDIPACDLVIRFD 496

Query: 501 LPKTVSSYIQSRGRARQHNSQFILMLERGNLKQ----RNKLFDI---------IRSERSV 547
           +  +   YIQSRGRAR+ +S +I M+E+ N +     RN  FD          +  +RS+
Sbjct: 497 MCISAIQYIQSRGRARKASSVYITMMEQDNNQHLNRFRNVTFDAQCLRRFCQKLPPDRSI 556

Query: 548 TDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKP 607
                 R PE   L A T             A+++T +S+ ++ R+   L      +PKP
Sbjct: 557 --GIYERPPEKELLVADT-------------ATLSTQNSMAVLARFVSTLAQGMDRSPKP 601

Query: 608 IFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
            +   +    + C + LP +APF +  G   R+K  ++     EAC +L ++G++N +L 
Sbjct: 602 EYVVCATGTNFTCWVILPDSAPFNSTTGILERSKVRARCAAAYEACTRLIEMGSINKNLQ 661

Query: 668 PSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFAC 727
           P+ ++    NL   +N  L  A ++K+++++       +  +        + A  F    
Sbjct: 662 PTFKK----NLPRMRNARL--ALSSKKQKVYTML----VKPKMWTSLPAGIPAVLFQTFV 711

Query: 728 SIV--TEIYSGFVLLIESELDNDVGNFELELYLVSKTV--KATVSSSGQVHLDADQMSKA 783
            ++  +   +   LL   EL  D+G  +L    VS  V   A +   G V +  +Q+ K 
Sbjct: 712 QVLPDSAAVTPIALLTREELP-DIGPIKL---FVSADVIMSAKLIPGGAVQVSPEQVQKL 767

Query: 784 KCFQELFFNGLFGKLF 799
             F    F+ +F K F
Sbjct: 768 AAFTLCLFDDVFSKKF 783



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 129/333 (38%), Gaps = 78/333 (23%)

Query: 996  MNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNF 1055
            M T K     ++  + L    +P  V ++  LLPS++ RL++ ++ ++ R+ +       
Sbjct: 923  METVKGDQRCYITLQCLKVSAIPADVARAALLLPSILHRLDTALIVTEARDMLG-----L 977

Query: 1056 HIPSSLILEALTTLGCCESF--------------------SMERLELLGDSVLKYAVSCH 1095
            ++P  L  EA T                            + ERLE LGDS LK A +  
Sbjct: 978  NLPLQLAWEAFTKGADDADDDDGELDAEHEHEQQQHGGQRNYERLEFLGDSFLKMATTIA 1037

Query: 1096 LFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPV 1155
            L+    +  E +    R   +CN  L     D  LQ YIR   FD R W           
Sbjct: 1038 LYTRNSEATEFEHHVERMLLLCNKNLFNTALDLGLQSYIRSDRFDRRTWYP--------- 1088

Query: 1156 PCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYV----- 1210
                      +PL      + T V          + +G KTIAD  EA+IGA Y+     
Sbjct: 1089 ---------NLPLVRGKSAKATVV----------QQLGDKTIADVCEAIIGAAYMSGVQQ 1129

Query: 1211 GGGLIAALYMMKWLGIDADLEVSLVDDCIT------------RASLRSYVPRINEIKDIE 1258
            GG +  A+  +  +  + + +++   D                 S+R+ V R+  I    
Sbjct: 1130 GGNMDEAVKAVTKMVNNDNHKMTSFSDYYAAFSVPAWHLSPGSVSVRATVDRVAAI---- 1185

Query: 1259 SKIGYEFTVKFLLQEAITHAS--VQEFYCYQNL 1289
              IGY F    LL+ A THAS   +E   YQ L
Sbjct: 1186 --IGYRFRSPLLLRSAFTHASYKAEEIPSYQTL 1216


>gi|395827764|ref|XP_003787065.1| PREDICTED: endoribonuclease Dicer isoform 1 [Otolemur garnettii]
 gi|395827766|ref|XP_003787066.1| PREDICTED: endoribonuclease Dicer isoform 2 [Otolemur garnettii]
          Length = 1921

 Score =  245 bits (626), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 212/731 (29%), Positives = 348/731 (47%), Gaps = 101/731 (13%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+   N   K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L  L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALYVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +L L  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLPLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYEKLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTL--RKQLSDYHAKIL----YCLDELGLICAYEAV 333
           + + +L+ +    ++        H TL  ++ LSD  A ++    +C D++  +   E  
Sbjct: 273 ELEEALNFINDCNISV-------HSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE-- 323

Query: 334 KICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393
              L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L 
Sbjct: 324 ---LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLL 376

Query: 394 YISTKL--HELLQL-------------FLSFGKS-----------------------TQV 415
            I  K   +E  Q              ++S+  S                       T +
Sbjct: 377 EILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNI 436

Query: 416 LC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------Q 463
           LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q
Sbjct: 437 LCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQ 496

Query: 464 KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
           +EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I
Sbjct: 497 EEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYI 556

Query: 524 LMLERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIV-- 574
           ++ +         +LK    +  I+R++ S +      D +              Y++  
Sbjct: 557 MLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVETGETDIDPVVDDDDDDDIFPPYVLRP 616

Query: 575 ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-T 632
           +  G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +
Sbjct: 617 DDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRAS 676

Query: 633 IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG 688
           I+GP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG
Sbjct: 677 IIGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPG 736

Query: 689 -AGTTKRKELH 698
             G+TKR++ +
Sbjct: 737 RPGSTKRRQCY 747



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 1/100 (1%)

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  
Sbjct: 1285 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYM 1344

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1150
            RS  V N  L++LG  + L   +  S FDP   W+ PG +
Sbjct: 1345 RSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYI 1384



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1804 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1863

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1864 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1915

Query: 1441 KRI 1443
             ++
Sbjct: 1916 PQV 1918



 Score = 44.3 bits (103), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 953  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1012

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1013 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1071


>gi|367022572|ref|XP_003660571.1| hypothetical protein MYCTH_2299034 [Myceliophthora thermophila ATCC
           42464]
 gi|347007838|gb|AEO55326.1| hypothetical protein MYCTH_2299034 [Myceliophthora thermophila ATCC
           42464]
          Length = 1604

 Score =  245 bits (625), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 229/799 (28%), Positives = 364/799 (45%), Gaps = 110/799 (13%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGF-KKLIIFLAP 101
           PR YQL++FE+AK RNTIAVL+TG+GKT+IA +L++   Q     +S+G  K++  FL  
Sbjct: 134 PRDYQLELFELAKTRNTIAVLDTGSGKTLIAALLLRWTIQNELESRSSGLPKRIAFFLVD 193

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
            V LV QQ+ V+  + D+ +E++ G   V+      W+K  ++N  +V T  IL   L  
Sbjct: 194 KVALVFQQHAVLTCNLDYPIEKFCG-DMVENVSEDFWRKAFDENMAIVCTADILYQCLSH 252

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--KSDNK-PKVFGMTASPVVRKGVSS 218
           +++ +D V  +V DE HH   NHPY +I+K+FY   K +NK P++ GMTASP     V +
Sbjct: 253 SYVRMDQVNLLVFDEAHHTKKNHPYARIIKDFYTDVKDENKRPRILGMTASP-----VDA 307

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
             D +   +ELE  L SQ+ T+ D T +                     S  K K EV  
Sbjct: 308 QTDPKVAAAELEGLLHSQIATVADPTVLH-------------------NSSAKPKHEVV- 347

Query: 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRK--QLSDYHAKILYCLDELGLICAYEAVKIC 336
           +++D      +       K +    +  R+    +D  A       ELG  CA    ++ 
Sbjct: 348 AEYDKRPPDWETELNQALKSLVGDLRVFRRPFAFTDTAAA------ELGPWCADRYWQLF 401

Query: 337 LEK----VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDL 392
            E+     L+++ E E + QS+     + + V H +      A  +     F       +
Sbjct: 402 FEEGEAVKLESRAEMEAFSQST-----YDQGVGHPVDKVRE-AHNLVKRHTFARPS---I 452

Query: 393 GYISTKLHELLQLFLS--FGKSTQVLCIIFVER----IIAAKVVERFVKKVPFLT----- 441
           G +S+K+  LL++     +  + +  CI+FV +     + A ++++   K+P L      
Sbjct: 453 GVLSSKVVLLLRILREQFYRANHRRRCIVFVRQRNTVSLLADLLQQPEMKIPGLVPGLLV 512

Query: 442 ---HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
              H   +Y     T  D      Q   +  F+ G++N +FAT V EEG+ +P+C+ +IR
Sbjct: 513 GGGHPDASYGNAKVTYRD------QVRTIYKFKKGELNCIFATSVAEEGLDIPDCNAIIR 566

Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSE-------------R 545
           FDL  T+  YIQSRGRARQ  S +I M+E GNL+ R KL    +SE             R
Sbjct: 567 FDLNDTLIQYIQSRGRARQEGSVYIHMVESGNLEHRRKLAQNQQSEDALRKFCEAMPEDR 626

Query: 546 SVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
            +T    + D    FL+       + Y V  TGA +    S+  +  +   LP     + 
Sbjct: 627 KLTGNNFNMD---YFLRKEK--GQRQYTVPETGAKLNYRQSLVFLAAFVASLPHPPGVSL 681

Query: 606 KPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDH 665
              +        ++CE+TLP ++P +   G    +K ++K     E C KL +   L+ H
Sbjct: 682 TADYLVLPVPGGFQCEVTLPDSSPIRNATGKVHESKAVAKCSAAYEMCLKLIKANYLDQH 741

Query: 666 LLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRW---GEKCGVILHAYK 722
           L P+  +     L + +N  L  A + K+K   G   +R     W   GE   V L+A  
Sbjct: 742 LRPTFTK----QLHAMRNARL--AVSAKKK---GRYNMRVKPEIWSAVGEP--VELYALA 790

Query: 723 FNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKAT--VSSSGQVHLDADQM 780
              +   V    S  +LL+  +   ++ +F   LY  S    A   V   G + LD  Q+
Sbjct: 791 LTLSDPTVLGRPSSPLLLLTRQPVQEIPSF--PLYFGSNRFSAVRCVPVPGSLELDDRQI 848

Query: 781 SKAKCFQELFFNGLFGKLF 799
                F    F  +F K +
Sbjct: 849 QGLAAFTLAVFKDVFSKEY 867



 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 124/313 (39%), Gaps = 62/313 (19%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTT-------- 1068
            +P+ VV  +Y  PS+M R++S ++A +      C     +I   L LEA T         
Sbjct: 1037 LPVDVVAMVYTFPSIMHRIDSNLVALEA-----CKKLGLNIRPDLALEAFTKDSDNTDEN 1091

Query: 1069 -------LGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
                    G   S + ERLE LGD  LK A +  +F   P K E +    R   VCN  L
Sbjct: 1092 DAEKIHFQGGMGS-NYERLEFLGDCFLKMATTISIFTLLPDKDESEYHIERMLLVCNRNL 1150

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVV 1181
                 + KL+ YIR +AFD R W   G L+L+                            
Sbjct: 1151 FNKALEVKLEEYIRSTAFDRRSWYPEG-LTLK---------------------------R 1182

Query: 1182 GKPCDM-GHRWMGSKTIADCAEALIGAYYVGG------GLIAALYMMKWLGIDADLEVSL 1234
            GK  D+ G   +  KTIAD  EALIGA Y+            A+  +  +  D +  +S 
Sbjct: 1183 GKRRDVDGKHQLADKTIADVCEALIGAAYLTAQDRSPSDFDLAVRAVTVMVRDRNHAMSS 1242

Query: 1235 VDD--CITRASLRSYVP----RINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQN 1288
              D     R +    VP    +I+       ++GY F    LL+ A  H +   FY    
Sbjct: 1243 YGDYYAAYRPAKWQTVPCSPAQIDMAARFRERMGYAFRHPRLLRSAFQHPAYPTFYEGLP 1302

Query: 1289 LYKHLQHCSTLLL 1301
             Y+ L+     LL
Sbjct: 1303 SYQRLEFLGDALL 1315


>gi|171690380|ref|XP_001910115.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945138|emb|CAP71249.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1568

 Score =  245 bits (625), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 198/692 (28%), Positives = 335/692 (48%), Gaps = 92/692 (13%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGF----KKLIIFLAP 101
           PR YQL++FE AK +NTIAVL+TG+GKT+IA +L++   Q    N F    K++  FL  
Sbjct: 124 PRDYQLELFERAKTQNTIAVLDTGSGKTLIAALLLRWTIQNELENRFQGQPKRIAFFLVD 183

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
            V LV QQ+ V+  + D+ V ++ G + +D   ++ W+    +N  +V T +IL   L  
Sbjct: 184 KVALVFQQHAVLTCNLDYSVAKFCG-QMLDRSSAEFWETTFQENMAIVCTSEILYQCLHH 242

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN---KPKVFGMTASPVVRKGVSS 218
           +++ +D +  ++ DECHH   NHPY +I+K+FY ++++   +P++ GMTASP     V +
Sbjct: 243 SYIRMDQINLLIFDECHHTKKNHPYARIIKDFYIQNEDNEARPRILGMTASP-----VDA 297

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF-YDQSKFCGSDLKGKLEVS 277
            +D     +ELE  L SQ+ T+ D T ++  +   KE     YD+               
Sbjct: 298 QIDPRIAAAELEGLLHSQIATVSDPTIIQHTISCPKEEIVLEYDRRP-----------RQ 346

Query: 278 WSK-FDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILY----CLDELGLICA--Y 330
           W+     S+  L G+                    DY  K          ELG  CA  Y
Sbjct: 347 WTTPLHQSIKALVGNH-------------------DYFTKAFVFTSQATAELGPWCADRY 387

Query: 331 EAVKICLEKV--LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
             +    E +  L+ Q E  + RQ +        +++ +  + +  A ++  +  F+   
Sbjct: 388 WQLFFNQEDIAKLETQAERSLLRQGAFS------QLMGLDKNRVREAHELVKNHEFE-QP 440

Query: 389 AVDLGYISTKLHELLQLFLSFGKSTQVL--CIIFVERIIAAKVVERFVK----KVPFLTH 442
            +D    S+K+ EL +       S  ++  CI+FV++   A ++   +K    K+P L  
Sbjct: 441 ILDTRLFSSKVIELWKTLHDQFSSQDLVRRCIVFVKQRNTANILVDLLKQPELKIPGLEP 500

Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLE--SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
             +     + +S ++     + +VL    F+ G++N +FAT V EEG+ +P+C+ +IRFD
Sbjct: 501 GILIGGGRNDSSWESSKTSYRDQVLTIIKFKKGELNCIFATSVAEEGLDIPDCNIIIRFD 560

Query: 501 LPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSE-------------RSV 547
           L  T+  YIQSRGRARQ  S +I M+ERGN +Q  K+  + +SE             R +
Sbjct: 561 LYDTLIQYIQSRGRARQEKSTYIHMIERGNSEQLQKMKQLKQSEDGLRKFCEAMPDTRKL 620

Query: 548 TDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKP 607
           T      D    FL+       + Y V  TGA +    S+  +  +   LP        P
Sbjct: 621 TGNNFKMD---YFLRKEK--GQRQYTVPETGAKLNYKQSLICLANFVSSLPHPPETNLTP 675

Query: 608 IFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
            +   + E  ++CE+ LP+ +P ++ +G    +K ++K     E C +L +   L+ HL 
Sbjct: 676 EYTVNTTEGGFQCEVILPAISPIRSAIGKVHGSKAVAKCSAAFEMCLQLVRGNYLDTHLR 735

Query: 668 PSVEEPSENNLISKKNESLPGAGTTKRKELHG 699
           P++ +     L + +N  L  A ++K+KE +G
Sbjct: 736 PTLTK----QLPAMRNARL--AISSKKKEEYG 761



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 134/346 (38%), Gaps = 66/346 (19%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P+ VV   Y  P ++ R++S ++A        C+    +I   L LEA T         
Sbjct: 1028 LPVQVVAMAYNFPVIIHRVDSNLVALDA-----CNMLGLNIRPDLALEAFTKDSDNTDEQ 1082

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G   ++  ERLE LGD+ LK A +  ++   P K E +    R   +CN  
Sbjct: 1083 DVEQVNFQRGMGNNY--ERLEFLGDAFLKMATTIAIYTLIPDKDEFEYHVERMVLICNRN 1140

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L     + KL+ YIR  AF+ R W   G L+L+                           
Sbjct: 1141 LFNNALEVKLEEYIRSMAFNRRTWYPEG-LTLK--------------------------- 1172

Query: 1181 VGKPCDMGHRW-MGSKTIADCAEALIGAYYV----GGGLIAALYMMKWLGIDADLEVSLV 1235
             GK  D+  +  +  K+IAD  EA+IGA Y+     G    A+  +  +  D +  +   
Sbjct: 1173 RGKRKDIRKKHVLADKSIADVCEAIIGAAYLTAQEAGNFDMAIQAVTRMVNDKNHTMQTW 1232

Query: 1236 DD--CITRASLRSYVPRINEIKDIESK----IGYEFTVKFLLQEAITHASVQEFYCYQNL 1289
             D   + +      +P  +  +D+  K    +GY F    LL+ A  H +    +     
Sbjct: 1233 SDYYAVYKKPAWQTMPTNSVQEDMAEKFHKRMGYRFQYPRLLRSAFQHPTYPTSWEKLPS 1292

Query: 1290 YKHLQHCSTLLLSQ--ITEYVKSFP--KPGETTDSGPSMKAPKALG 1331
            Y+ L+     LL    I      FP   P   T+   +M + + LG
Sbjct: 1293 YQRLEFLGDALLDMACIDHLFHRFPGADPQWLTEHKMAMVSNQFLG 1338


>gi|301770225|ref|XP_002920522.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like
           [Ailuropoda melanoleuca]
          Length = 1931

 Score =  245 bits (625), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 212/729 (29%), Positives = 349/729 (47%), Gaps = 95/729 (13%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  +  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRSGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VLVMT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKEKWSQEFMKHQVLVMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G       
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYGRLLL 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    +  +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNIPVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIV--ES 576
            +         +LK    +  I+R++ S +      D E        +     Y++  + 
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEPDIEPVVDDDDVF---PPYVLRPDD 620

Query: 577 TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIV 634
            G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IV
Sbjct: 621 GGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIV 680

Query: 635 GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-A 689
           GP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  
Sbjct: 681 GPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRP 740

Query: 690 GTTKRKELH 698
           G+TKR++ +
Sbjct: 741 GSTKRRQCY 749



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  
Sbjct: 1288 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYM 1347

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1348 RSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1385



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1814 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1873

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1874 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1925

Query: 1441 KRI 1443
             ++
Sbjct: 1926 PQV 1928



 Score = 44.3 bits (103), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 955  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073


>gi|281339672|gb|EFB15256.1| hypothetical protein PANDA_009266 [Ailuropoda melanoleuca]
          Length = 1917

 Score =  245 bits (625), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 212/729 (29%), Positives = 349/729 (47%), Gaps = 95/729 (13%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  +  K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRSGKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VLVMT  + L+ L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKEKWSQEFMKHQVLVMTCYVALNVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G       
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYGRLLL 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + + +L+ +    +  +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEEALNFINDCNIPVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + L  I
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIKLLEI 383

Query: 396 STKL--HELLQL-------------FLSFGKS-----------------------TQVLC 417
             K   +E  Q              ++S+  S                       T +LC
Sbjct: 384 LRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILC 443

Query: 418 -IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV-------QKE 465
            IIFVER   A V+ R +K+     P L +++  ++TG     +    K        Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           VL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563

Query: 526 LERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIV--ES 576
            +         +LK    +  I+R++ S +      D E        +     Y++  + 
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEPDIEPVVDDDDVF---PPYVLRPDD 620

Query: 577 TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIV 634
            G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P + +IV
Sbjct: 621 GGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIV 680

Query: 635 GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-A 689
           GP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  
Sbjct: 681 GPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRP 740

Query: 690 GTTKRKELH 698
           G+TKR++ +
Sbjct: 741 GSTKRRQCY 749



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  
Sbjct: 1289 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYM 1348

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1349 RSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1386



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1800 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1859

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1860 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1911

Query: 1441 KRI 1443
             ++
Sbjct: 1912 PQV 1914



 Score = 44.3 bits (103), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 956  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1015

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1016 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1074


>gi|425772078|gb|EKV10503.1| RNA helicase/RNAse III, putative [Penicillium digitatum Pd1]
 gi|425777255|gb|EKV15436.1| RNA helicase/RNAse III, putative [Penicillium digitatum PHI26]
          Length = 1372

 Score =  244 bits (624), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 213/758 (28%), Positives = 349/758 (46%), Gaps = 69/758 (9%)

Query: 65  VLETGAGKTMIAVMLIKDIAQA---IKSNGFK-KLIIFLAPTVHLVHQQYDVIRVHTDFE 120
           +L+TG+GKT++AV+L+K I Q     +++G K ++  FL  TV LV QQ  V+R + D +
Sbjct: 80  LLDTGSGKTLVAVLLLKHILQMELNKRAHGTKPRVAFFLVDTVTLVFQQSAVLRNNLDQK 139

Query: 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHA 180
           V  ++G  G D WD Q W K + K  V+V T +IL  +L    + +D +  ++ DE HHA
Sbjct: 140 VAHFFGNLGPDLWDKQTWDKHLEKYMVIVCTAEILNQSLLNGHIRIDQINLLIFDEAHHA 199

Query: 181 TGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF 238
              HP+ +I+++ Y K+D  N+P++FGMTASPV      +  D      +LE+ LDS++ 
Sbjct: 200 KKEHPFARIIRDAYLKADIENRPRIFGMTASPV-----DAKCDLAEAAVQLETLLDSRIA 254

Query: 239 TIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKD 298
           T  D T +  FV    E    YD+                     S + L  +    Y D
Sbjct: 255 TTSDLTLLRNFVNKPMEVEWVYDKLP-----------------PPSETNLHSTLKTKYGD 297

Query: 299 MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR--QSSLQ 356
           M       R       A +     ELG  CA +   + L   +  + E  I +   S  +
Sbjct: 298 MLILEGVFR------FASVAST--ELGGWCADQVWALALADEVLPKLEGSIGKVTDSDPR 349

Query: 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELL-QLFLSFGKSTQV 415
                 E +  I  A  L ++   D  F  S       +S KL  L+ +L   F KS   
Sbjct: 350 DSEKASEEIKRIQEASHLVNEYITDRAFMPSD------LSPKLELLMGKLQEQFAKSPDT 403

Query: 416 LCIIFVERIIAAKVVERFVKK--VPFLT-HLTVAYLTGSTTSVDALTPKVQKEVLESFRG 472
            CI+F +R   AKV+ +  +K  +P L   + V    G    +++ T + Q  VL  FR 
Sbjct: 404 KCIVFTQRRNTAKVMLQLCEKLQIPNLRPEILVGVRKGDAIGMNS-TFRRQFLVLAKFRK 462

Query: 473 GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK 532
            +VN LFAT V EEG+ +P+C+ V+RFDL  T   Y+QSRGRAR+ +S +  M+E GN  
Sbjct: 463 SEVNCLFATSVAEEGLDIPDCNLVVRFDLYDTFIQYVQSRGRARRADSVYATMVECGNRN 522

Query: 533 QRNKLFDIIRSERSVT--------DTALSRDPEACFLKACTYVKTKSYIVESTGASVTTD 584
              +L ++ R+E  +         D  L  D     +      + ++Y V  TGA +T  
Sbjct: 523 HSMRLQEVRRAEHLMKNFCNLLPEDRKLYGDGHDMGVLVHEENRKRTYTVTRTGAMLTYR 582

Query: 585 SSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLS 644
            ++ ++ R+   L  +   + K  +   S  E++ CE+ +P  +P + ++G     K+L+
Sbjct: 583 HAIGVLARFASSLQYENEISAKVTYVVMSENESFSCEVIMPEKSPVRRVLGCCESKKSLA 642

Query: 645 KQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIR 704
           KQ    +AC  L +   L++H            L + +N  L  A T+KR + +    +R
Sbjct: 643 KQSAAFDACLLLRKRNLLDEHF----NSVYHKRLPAMRNAKL--AITSKRTDQYK---MR 693

Query: 705 ALSGRWGEKCGVI---LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSK 761
                W  + G I   L+A       S       G ++L+  E    +  F + L    +
Sbjct: 694 TKPSIWARQQGTIPIRLYAILIRLIPSEPLTRAHGSIVLLSREQITAIPTFPVFLDDDIE 753

Query: 762 TVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLF 799
           T   ++   G + + ++++     F    F+ +F K +
Sbjct: 754 TTVQSLCIDGCLEVASEELEIVTAFTLAVFHDVFHKTY 791



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 166/439 (37%), Gaps = 112/439 (25%)

Query: 1009 PELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQ--------------LREEINCHSRN 1054
            P+ LV   +  SV  + ++ P+++ R+ES ++A +                E +   S N
Sbjct: 945  PQPLVLSTISKSVAATCFVFPAIITRMESYLIAEEGCKLLGLGGIKLEFALEALTKDSDN 1004

Query: 1055 FHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSW 1114
                 SL +     +G     + ERLELLGDSVLK A S  LF+  P   E      R  
Sbjct: 1005 TEEHRSLQIHVQRGMGK----NYERLELLGDSVLKMATSISLFVQNPDDDEYDYHVNRMC 1060

Query: 1115 AVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFT 1174
             +CN  L K  T+ KL  +IR   F    W  PG LSL     E G D        KF  
Sbjct: 1061 LICNKNLFKNATELKLYEFIRSRGFSRHMWYPPG-LSL-----EYGRD------HAKFVD 1108

Query: 1175 QDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL-----IAALYMMKWLGIDAD 1229
             +           G   +  KTIAD  EALIGA  + GG      +A   +  ++     
Sbjct: 1109 SE-----------GKHSLSEKTIADVCEALIGASLLSGGDDHRYDMAVKAVTVFVNSQKH 1157

Query: 1230 LEVSLVDDCITRASLRSYVPR------INEIKDIESKIGYEFTVKFLLQEAITHASVQEF 1283
               S   D I+  S+  Y  +      +N  + I  K+GYEF    LL+ A TH S    
Sbjct: 1158 TATSW-KDYISAYSIPLYQKKAADGFEMNLAQQIFEKVGYEFKYPRLLRSAFTHPSYPLT 1216

Query: 1284 Y----CYQN--------------------------------------------------L 1289
            +    CYQ                                                   L
Sbjct: 1217 WAKVPCYQRLEYLGDALLDMVCVEHLFHRFPTRDPQWLTEHKMAMVSNKFLGALAVKLGL 1276

Query: 1290 YKHLQHCSTLLLSQITEYVKSF-----PKPGETTDSGPSMKAPKALGDLLESIVGAVLID 1344
            + HLQH S  L+ Q ++Y +          GE      +  +PK L D+LE+ +GA+ +D
Sbjct: 1277 HLHLQHFSNPLMIQNSKYAEELQLAESESNGEVNYWLSTSDSPKCLPDMLEAYLGAIFVD 1336

Query: 1345 TKLNLDEVWRIFKPILSPI 1363
            +  +   +   FK  + P 
Sbjct: 1337 SSFDFTVIEAFFKRHILPF 1355


>gi|391348645|ref|XP_003748555.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
          Length = 1461

 Score =  244 bits (623), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 183/651 (28%), Positives = 302/651 (46%), Gaps = 71/651 (10%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--------KLIIF 98
           R YQ+++FE AK+ NTI  L TG GKT I+V+L+K     +     +        K  +F
Sbjct: 27  RSYQIELFEFAKKHNTIVCLGTGTGKTFISVLLVKHFEHEVAGPWIEGSYGEPIGKRTVF 86

Query: 99  LAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158
           LAP+V LV QQ  V+  H   +V  Y G+   D W S+ W +E N+N VLVMTP++   A
Sbjct: 87  LAPSVPLVEQQSAVLAQHMTVKVASYVGSMDTDRWSSENWNREFNENGVLVMTPEVCRIA 146

Query: 159 LRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGV 216
           +   FL ++ +  +V+DECH ATG+ PY KIM+ + +  D   +P++ G+TAS V  K  
Sbjct: 147 IDHGFLPMENINLLVLDECHRATGDDPYVKIMENYANLGDKSRRPRILGLTASVVNAK-- 204

Query: 217 SSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276
               + + +I +LE+ LDS   T       + F     E    +        D + +L +
Sbjct: 205 VQGFEVQKKIRDLEACLDSVAKT--SSLSAQNFGTKPTEIIVTHHP-----HDAEKQLPI 257

Query: 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC 336
             +K          + L    D  +  + ++   S YH    YC   L      E     
Sbjct: 258 DAAKM---------ALLEDCADYTEFRRNMKALASTYHTCGPYCAKVLVEFRERE----- 303

Query: 337 LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS 396
           L+K L+  +  + ++  +       +E+   +G    L D                  + 
Sbjct: 304 LQKALQLPDCAQGFKDHAHIKFEIFKELYEFLGDCPSLHD------------------VP 345

Query: 397 TKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF----LTHLTVAYLTGST 452
            ++  LL++   F K T +  ++FV+  + A V+  +++++         +  +++ G  
Sbjct: 346 PRMTRLLEVIRRFEK-TNLSAVVFVKERLVAYVLYNWMRQLSVEDSSFAFIRCSFIVGQA 404

Query: 453 T-----SVDA----LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK 503
                  +D     +  K Q +V+++FR G+ NL+FAT VIEEGM VP C+ +IRFD P 
Sbjct: 405 QINYAREIDPESLKMNSKAQNKVMKNFRNGEYNLMFATSVIEEGMDVPACNLIIRFDPPM 464

Query: 504 TVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDT--ALSRDPEACFL 561
            V SY QS+GRAR   S ++++    +      L D  +    +        R     F 
Sbjct: 465 DVRSYTQSKGRARAKPSLYVVLSSESDRLMTEALLDSYQETEQLVMKCCGTERIAPTAFE 524

Query: 562 KACTYVKTKSYIVESTG-ASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYEC 620
            A  +V          G A +T  S++++I+ YC+     KY    P F  +   + + C
Sbjct: 525 TAEKFVDDPDLPPYVYGRARITAKSAISIIYGYCQRFMRLKYPNLFPFFDMEETPDGFVC 584

Query: 621 ELTLPSNAPFQTIVGPTSR---NKNLSKQLVCLEACEKLHQVGALNDHLLP 668
            L++P   P +  +   +R   +K+ +K  V LE C++LHQ G L D+LLP
Sbjct: 585 TLSMPIVCPVKEKISNRARPFPSKDKAKSYVALEMCKRLHQCGELADNLLP 635



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 128/319 (40%), Gaps = 68/319 (21%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            +++ALTT GC E F +ERLELLGDS L+   +  +   YP K   +L+  R + V NS L
Sbjct: 1089 LMKALTTRGCEEIFDLERLELLGDSFLQIVSTFAVMDWYPDKSISELNVLRQYEVNNSHL 1148

Query: 1122 ----HKLGTDRKLQGYI------------RDSAFDP------------RRWVAPGQLSLR 1153
                H+ G  + L+               R + F+             + W   G  ++ 
Sbjct: 1149 LYRAHEKGLTQVLEAQPFRASYNFLPFGHRTAPFEQKLLQREFLCCLVKHW---GFEAVS 1205

Query: 1154 PVP------------------CECGVDTLEVPLDGKFF-TQDTKVVVGKPCDMGHRWMGS 1194
             VP                   E G + +   +D K + ++D       P    H +  +
Sbjct: 1206 SVPRLKDLRFCKNIQEALNHFAESGEEKINAYVDEKIYDSEDLPKRHEIPVRSFHDF-KA 1264

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGID-ADLEVSLVDDC----------ITRAS 1243
            K   D  EA+ G Y    G + AL   KW+G D  D E +   D           +    
Sbjct: 1265 KIGGDVVEAMAGVYLEKCGPVGALRFFKWIGKDFGDTETNNFLDAFKLDFSAAQKVPPEQ 1324

Query: 1244 LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ 1303
            +R Y   I++   +E ++GY+F  + L  +AITH S +E     ++ K       ++   
Sbjct: 1325 MRQYSHLIDK---VERQVGYKFKSRGLALQAITHHSCREHLLTDDMDKLAFVGEAVIDYL 1381

Query: 1304 ITEYVKSFP---KPGETTD 1319
            +T Y+        PG+ TD
Sbjct: 1382 LTLYIYGLSTSLNPGQLTD 1400


>gi|321458470|gb|EFX69538.1| hypothetical protein DAPPUDRAFT_329028 [Daphnia pulex]
          Length = 1597

 Score =  244 bits (623), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 218/723 (30%), Positives = 327/723 (45%), Gaps = 121/723 (16%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNG-----FKKL-- 95
           N IPR YQL+++E A+R NTI  L TG+GKTMIAV+LI+D A  +         F+ L  
Sbjct: 10  NSIPRNYQLELYEHARRENTIVYLPTGSGKTMIAVLLIRDYAAQVNKFAAQIKCFRPLAQ 69

Query: 96  ----IIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMT 151
               ++FL PTV L  QQ   IR HT  EV EYYG  GVD W    W KE+ KN+VLVMT
Sbjct: 70  DGQRVVFLVPTVILAKQQAAYIRRHTCLEVGEYYGELGVDLWKGDRWAKELEKNNVLVMT 129

Query: 152 PQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTK---IMKEF--YHKSDNKPKVFGM 206
            Q+ ++A+   F+S+  +  +VIDECH A  + P      ++ EF   H + + P+V G+
Sbjct: 130 AQLFVNAVNHGFISVGQMALLVIDECHRAVKDSPMKHSLIVLNEFCQRHGAGSVPRVLGL 189

Query: 207 TASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFC 266
           TA+  + K      D    IS+L+++++S + T              +  C +    +  
Sbjct: 190 TAALFLEK--CKPKDVTKNISKLKTSMNSIIRTAHPHKIAGYSTKPIEIICEYSSWQENT 247

Query: 267 GSDLKGKLEVSW------SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYC 320
           G+      E +W         D  L +L+G  L+C             +L+D   +I   
Sbjct: 248 GN-----CETAWLSSHIQELLDTCLMELRGD-LDC-------DSPCPGELTDILREIKIL 294

Query: 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
               G       V I  +++ +   +      S L  ++F      ++   L    KI  
Sbjct: 295 TSIFGPYGTNHTVSIFSKEIRRLGFQS--VNNSQLVNRFF-----KIVDVMLEEIRKI-C 346

Query: 381 DFGFDYSKAVDLGYISTKLH--ELLQLFLSF--------GKSTQVLC-IIFVERIIAAKV 429
           +F F     ++   + T  H   L+ +   F         K T +LC I+FVER  +A V
Sbjct: 347 EFIFGQLSPIERLRLFTTPHVTRLMDILRQFSPGEIDTTAKFTPLLCSIVFVERRSSANV 406

Query: 430 VERFVKKV----PFLTHLTVAYLTGSTTSVDALTPK-----------VQKEVLESFRGGK 474
           +   +++     P L++L   +  G  +      PK            Q +++  FR G 
Sbjct: 407 LYHILREASQCDPGLSYLNPLFTMGQASG----NPKGKMKENHHLNQSQSKIIRQFRDGT 462

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR 534
            NLL AT V+EEG+ V  C+ VIRFD  KT   Y+QS+GRAR  N+ +ILM+    L   
Sbjct: 463 CNLLVATSVLEEGVDVRACNLVIRFDGIKTFCDYVQSKGRARSPNAFYILMVPTEKL--- 519

Query: 535 NKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS-------------YIVESTGASV 581
           +   D +     +  + +  DP +  + + T  +                Y     G  V
Sbjct: 520 SPFLDTLAGFHFIEQSLM--DPSSVMMSSVTDDEPSDPQLEQLWQKIIPPYCPYPDGPRV 577

Query: 582 TTDSSVNLIHRYCEMLPSD------KYYTPKPIFKYKSAE-----------------EAY 618
           T  SS++L++ YC  LPSD       YY    I     AE                   +
Sbjct: 578 TLLSSISLLNWYCATLPSDGSAPLAPYYVVNRISAGSLAEMDRDHTNHLRRLGSTIQNPF 637

Query: 619 ECELTLPSNAPFQT-IVGPTSRNKNLSKQLVCLEACEKLHQVGALND-HLLP---SVEEP 673
            C L LP N P +  ++G    +K L+KQ V L+AC +LHQ+G L+D HL+P   SV E 
Sbjct: 638 RCTLLLPLNCPLRDELIGRVMPSKRLAKQEVSLQACIRLHQLGELDDQHLMPLSKSVVET 697

Query: 674 SEN 676
            EN
Sbjct: 698 DEN 700



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 44/252 (17%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKK-HEGQLSARRSWAVCNST 1120
            +L ALTT      + +ERLE++GDS LK A S  ++   P   HEG+++  R   VCN  
Sbjct: 1155 VLRALTTSVANAGYDLERLEVIGDSFLKLAASIRVYCDSPSHFHEGKMTHLRMLQVCNRN 1214

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKV 1179
            L KLG  + +  ++  + F  +  W+ P        P     D +E+  D          
Sbjct: 1215 LFKLGKIKSIPRFVVATKFVAKENWLPPCYF-----PNNTDDDCMELETD---------- 1259

Query: 1180 VVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADL--------- 1230
               KP     + +  K++AD  EAL G Y    G+  AL +M+W+G++            
Sbjct: 1260 --EKPNAKLWQRISKKSVADSVEALFGLYLTLHGIKGALKVMRWMGVNVPDSSGDEDSSS 1317

Query: 1231 ----------EVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASV 1280
                      E  L+D    +  L  +   +   + +E  + + F  +F L +A +HAS 
Sbjct: 1318 SSSSFGGTPPEPLLLDSPQAKHLLDDH---LAGFETLERSLNFRFGNRFYLLQAFSHASY 1374

Query: 1281 QE---FYCYQNL 1289
                   CYQ L
Sbjct: 1375 HHNRMTSCYQRL 1386



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 13/145 (8%)

Query: 946  TFVNYFSEKYGIVLIHPGQPLLRL-KQSHNPHNLL----VNFNDGGGSGKGSKSGMNTKK 1000
            T+ NYF +++  ++ +  QPLL + K+S    N L    VN  +    G G    +    
Sbjct: 921  TYANYFRDRHNAIIANLSQPLLEVRKESFKTFNFLTPKYVNRKEAADEGDGEIQSL---- 976

Query: 1001 PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHS--RNFHIP 1058
            P+  ++  PE       P S+ +    +PS+  RL SL+LA +LR EI   +      +P
Sbjct: 977  PKGSIYFVPEFCEVHRFPASMWRQAVWIPSIFYRLNSLLLADELRMEIQAKTGLGLSVLP 1036

Query: 1059 SSLILEALT--TLGCCESFSMERLE 1081
             +L  E L   T G C+   ++ +E
Sbjct: 1037 PNLQWEPLQMKTSGKCQQLPLQVVE 1061



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 31/38 (81%)

Query: 1323 SMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
            +++ PK LGD+ ES+VGAV +D+ ++LD VWR+F P++
Sbjct: 1483 AVEVPKVLGDIFESLVGAVFLDSDMSLDAVWRVFYPLI 1520


>gi|396465578|ref|XP_003837397.1| similar to dicer-like protein 1 [Leptosphaeria maculans JN3]
 gi|312213955|emb|CBX93957.1| similar to dicer-like protein 1 [Leptosphaeria maculans JN3]
          Length = 1588

 Score =  244 bits (623), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 188/675 (27%), Positives = 333/675 (49%), Gaps = 61/675 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQ ++F  AK +NTIAVL+TG+GKT IA +L++    D  +   + G  ++ IFL  
Sbjct: 117 PRDYQTELFLRAKDQNTIAVLDTGSGKTHIATLLLRHVLEDELEHRATGGAPRIAIFLVD 176

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V+LV QQ +V++   D  VE   G+ G   W+   W K   KN V+V T ++L+  +  
Sbjct: 177 SVNLVFQQANVLKCGLDQNVESICGSMGTSLWNKSTWDKHFQKNMVIVCTAEVLVQCVMH 236

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN---KPKVFGMTASPVVRKGVSS 218
           +F+++  +  ++ DE HHA  NHPY +IMK++Y +  N   +P++FGMTASP+  +G+SS
Sbjct: 237 SFITMAQINLLIFDEAHHAKNNHPYARIMKDYYVQELNLSKRPRIFGMTASPIDVRGLSS 296

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG-SDLKGKLEVS 277
               +   S+LE  L +++ TI+ +  +   +    E    Y + +    + L   ++  
Sbjct: 297 D-HIKQAASDLEKLLHAKIATIDPEKLINNSISRPDEEIAVYPRLESTHETPLHQAIKDK 355

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL 337
           +    A       S+ +  +        L    SD +    +  ++   +   E  K   
Sbjct: 356 YGDITAFQKFFIASKRHLLE--------LGPWASDMYWSFAFAEEQSRKLQQREEFKYNK 407

Query: 338 EKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397
            K+  +Q+E +   +   +   F+++      S   ++D        D S  V L     
Sbjct: 408 AKLDDSQQEWDAKVKRLKEAAEFVQQYTMETES---ISDS-------DLSSKVRL----- 452

Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV--PFLTHLTVAYLTGSTTSV 455
            L   L L+  + ++ +  CI+FVE+   A++++   +++  P L H  +     +    
Sbjct: 453 -LRYWLNLY--YERTDEPRCIVFVEKRETARLLKLIFERIGGPNL-HCGMLVGVNNRAGE 508

Query: 456 DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
           ++++ + Q   + SFR G++N +FAT V EEG+ +P C+ V+RFDL +T+  Y+QSRGRA
Sbjct: 509 ESISLRNQILAVSSFRRGELNCIFATSVAEEGLDIPQCNLVVRFDLYRTMIGYVQSRGRA 568

Query: 516 RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD---TALSR-------DPEACFLKACT 565
           R  NS+++ MLE GN   R ++ D +RS+  V      +LS+       D +   L A +
Sbjct: 569 RHTNSKYLHMLEDGNHDHRQRVMD-VRSDEVVMRQFCQSLSQDRRIDGSDEDGNDLLALS 627

Query: 566 YVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPS-------DKYYTPKPIFKY---KSAE 615
            +    Y    +GA +T  SS+++++ +  ++PS          Y  +P   Y       
Sbjct: 628 EILFPYYTDPKSGARLTYRSSLSILNHFIAVIPSPNRETMVQPTYIIRPATNYDPRNPLR 687

Query: 616 EAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE--P 673
             + CE+ LP  AP  +I G     K ++K       C +L + G L+++LLP++    P
Sbjct: 688 SGFICEVILPEYAPIISITGKIESKKLIAKCSAAFMMCLELRKRGYLDENLLPTLHRLAP 747

Query: 674 SENNLISKKNESLPG 688
           +  N +   +E   G
Sbjct: 748 ARRNALLAVSEKKKG 762



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 103/464 (22%), Positives = 167/464 (35%), Gaps = 143/464 (30%)

Query: 1009 PELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT- 1067
            P+ L   ++    V   Y+LP+++ R ES ++A        C   + H+  +L LEALT 
Sbjct: 1021 PQPLKISNIATPFVVMCYVLPAIIHRFESYLIALDA-----CEVLDLHVSPALALEALTK 1075

Query: 1068 -------------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSW 1114
                                 + ERLE LGD  LK A S  +F+  P+++E +   RR  
Sbjct: 1076 DSENTDEHEEEKINFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPEENEFEYHVRRML 1135

Query: 1115 AVCNSTLHKL-----------GTDRKLQ--GYIRDSAFDPRRWVAPGQLSLRPVPCECGV 1161
             +CN  L +            GT+  L+   Y+R  AF  R W  P  L L         
Sbjct: 1136 MLCNQNLMETAIGVKKVARPDGTEINLELPKYVRTEAFSRRTWY-PEALKL--------- 1185

Query: 1162 DTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYV---GGGLIAAL 1218
                  + GK   +     +     + H  +G K++AD  EA IGA ++     GL    
Sbjct: 1186 ------IRGKGINKSEDDWLK----LRHN-LGDKSVADVCEAFIGAAFMEHHKHGL---- 1230

Query: 1219 YMMKWLGIDADLEVSLV-------DDCITRAS--LRSYV-PR----------INEIKDIE 1258
                W+    DL V  V       D  + + +    +YV P+          ++  + IE
Sbjct: 1231 ----WIPSQWDLAVKAVKLFANNPDHSMEKWTDYYAAYVKPKYQLDQPTAAMLDAARQIE 1286

Query: 1259 SKIGYEFTVKFLLQEAITHASVQEFY----CYQNL------------------------- 1289
            +   Y F    L++ A TH S    +     YQ L                         
Sbjct: 1287 AVHPYHFKYPRLVRSAFTHPSYAYMFEHIPNYQRLEFLGDSLLDMAFIMHLYYKYPDKDP 1346

Query: 1290 -------------------------YKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSM 1324
                                     ++HL+  + +L +QI +YV    +     +     
Sbjct: 1347 QWLTEHKTPMVSNKFLGAVCVKLGWHRHLKSNTAILSTQIRDYVLEIDEAEREANGAVDY 1406

Query: 1325 -----KAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPI 1363
                 + PK L D++E+ V A+ +D++ +   V   F   L P 
Sbjct: 1407 WVNVHEPPKCLADVIEAYVAALFVDSQFDFSVVQSFFDRHLKPF 1450


>gi|451856503|gb|EMD69794.1| hypothetical protein COCSADRAFT_341850 [Cochliobolus sativus
           ND90Pr]
          Length = 1575

 Score =  243 bits (621), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 187/667 (28%), Positives = 320/667 (47%), Gaps = 85/667 (12%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA----IKSNGFKKLIIFLAP 101
           PR YQ ++F+ AK  N IAVL+TG+GKT IA +L++ +           G  ++  FL  
Sbjct: 117 PRDYQTELFQRAKSENVIAVLDTGSGKTHIATLLLRHVLDMELDHRARGGIPRMAFFLVD 176

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V+LV QQ +V+R   D  VE   G+ G   W    WQ   +KN  +V T ++L+  +  
Sbjct: 177 SVNLVFQQANVLRCGLDQNVEGICGSMGASLWSKSTWQSYFDKNMAIVCTAEVLVQCMMH 236

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN---KPKVFGMTASPVVRKGVSS 218
           +F+++  +  ++ DE HHA  NHPY ++MK++Y +  +   +P++FGMTASPV  KG+S+
Sbjct: 237 SFIAMSQINLLIFDEAHHAKSNHPYARLMKDYYLQETDVSQRPRIFGMTASPVDTKGLSA 296

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ-SKFCGSDLKGKLEVS 277
               E     LE  L S++ T  + T     +    E    Y +  +   + L  K++  
Sbjct: 297 DHIKEA-ARNLEKLLHSKIATTTESTLASNSISRPDEEVAMYPRLREEYETPLHKKIKAR 355

Query: 278 WSK---FDASL--SKLQGSQLNCY-KDM-------DDKHKTLRKQLSDYHAKILYCLDEL 324
           +     FD     S+  G +L  +  DM       D++ + L ++    H+K        
Sbjct: 356 FGDIRAFDKYFLASRRHGRELGRWASDMYWSFVFTDEQSRKLEQRERLKHSK-------- 407

Query: 325 GLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF 384
                 + VK    KV + QE  E  +Q +                A  L+D+       
Sbjct: 408 ---NRPDEVKEWDVKVKRLQEAAEFVQQFNF--------------GACTLSDQ------- 443

Query: 385 DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT 444
                 DL     KLH  L L+  + +S +  CI+FVE+   A++++    ++    HL 
Sbjct: 444 ------DLSSKVQKLHYWLNLY--YERSDEARCIVFVEQRQTARLLQLIFSQIGG-PHLR 494

Query: 445 VAYLTGSTTSVDALTPKVQKEVL--ESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
            + L G  +        ++ +++    FR G++N LFAT V EEG+ +P C+ V+RFDL 
Sbjct: 495 CSVLVGVNSREHEQNISLRNQIITVAKFRRGELNCLFATSVAEEGLDIPQCNLVVRFDLY 554

Query: 503 KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSV--------TDTALSR 554
           +T+ +Y+QSRGRAR  NS+++ M+E GN   R ++ D+   E+ +         D  +  
Sbjct: 555 RTMIAYVQSRGRARHRNSKYLHMIEEGNHDHRERVMDVKLDEQVMRQFCRELPQDRHIDE 614

Query: 555 -DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPS-DKYYTPKPIF--- 609
            D ++  L         S+I +  GA ++  SS+ +++ +   LP  D+    +P +   
Sbjct: 615 YDNDSMDLLTFEDQLYPSFITK-LGAKLSFRSSLAILNHFVATLPGPDRQTMLQPTYVVC 673

Query: 610 ---KYKSAE---EAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALN 663
               Y   +     +  E+ LP ++P  T +G     K ++K     +AC +L++ G L+
Sbjct: 674 PDLNYDGLDPQRRGFVSEVILPEHSPVNTTIGDVQSKKAIAKCSAAYKACLELYKKGYLD 733

Query: 664 DHLLPSV 670
           D+LLP+ 
Sbjct: 734 DNLLPTT 740



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 172/458 (37%), Gaps = 105/458 (22%)

Query: 950  YFSEKYGIVLIHPGQPLLR--LKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKP------ 1001
            Y+SE++   L  P  P+ +   +Q H   + +++++D   +   + S  N  +P      
Sbjct: 933  YYSERFAPHL-KPQDPVPKGLARQGHKFMSSILDYSDSTWTRSRNISKWNQSQPVLQAEK 991

Query: 1002 --------------------QMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLA 1041
                                 +  ++ PE     ++    V   Y+LP+++ R ES ++A
Sbjct: 992  IPLRRNQLARIEDKEKGEFGNLKAYICPEPFQISNLATPFVVMCYVLPAIIHRFESYLIA 1051

Query: 1042 SQLREEINCHSRNFHIPSSLILEALT--------------TLGCCESFSMERLELLGDSV 1087
             +      C+  N  +  +L LE+LT                      + ERLE LGD  
Sbjct: 1052 LEA-----CNVLNLKVNPALALESLTKDSENSEEHDEEKINFKSGMGPNYERLEFLGDCF 1106

Query: 1088 LKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL-----------GTDRKLQ--GYI 1134
            LK A S  +F+  P ++E +   RR   +CN  L +            GT++ LQ   YI
Sbjct: 1107 LKMATSLSVFVQQPDENEFEFHVRRMEMLCNKNLMETAVGKKKVVSAEGTEQDLQLYKYI 1166

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
            R  +F  R W   G   L+                G   +QD  +       + H  +G 
Sbjct: 1167 RTESFSRRTWYPEGLKLLKG--------------KGANKSQDDWL------KLTHN-LGD 1205

Query: 1195 KTIADCAEALIGA----YYVGG-----GLIAALYMMKWLGIDADLEVSLVDDCITRASLR 1245
            K+IAD  EA IGA    +Y GG         A+  +K      D  +S   D        
Sbjct: 1206 KSIADVCEAFIGAALQEHYTGGLWKPTDWDEAVKAVKLFANSPDHTMSKWSDYYEAYQKP 1265

Query: 1246 SY------VPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNL--YKHLQHCS 1297
             Y         ++  + IE K  Y F    LL+ A  H S    Y Y+N+  Y+ L+   
Sbjct: 1266 KYQTADASAAMLDMAQKIEMKHPYHFKYPRLLRSAFAHPSYP--YMYENIPSYQRLEFAG 1323

Query: 1298 TLLLSQ--ITEYVKSFP--KPGETTDSGPSMKAPKALG 1331
              LL    IT     +P   P   T+    M + K LG
Sbjct: 1324 DALLDMAFITHLYFKYPDKDPHWLTEHKTPMVSNKFLG 1361


>gi|302422698|ref|XP_003009179.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
 gi|261352325|gb|EEY14753.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
          Length = 1510

 Score =  243 bits (620), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 221/780 (28%), Positives = 361/780 (46%), Gaps = 79/780 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA----IKSNGFKKLIIFLAP 101
           PR YQ+++FE AKR+N IAVL TG+GKT+IA +L++   +      ++   K++  FL  
Sbjct: 147 PREYQIELFERAKRKNIIAVLPTGSGKTLIAALLLRYTLEQETADRRAGKPKRIAFFLVE 206

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
            V L  QQ+ V+  + +F ++   G     +W  + W K  + N V+V T  IL   L +
Sbjct: 207 KVALALQQHAVLECNLEFPIDRVCGDMVRSDWIKESWMKRWDDNMVMVCTAAILQQCLAR 266

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY---HKSDNKPKVFGMTASPVVRKGVSS 218
           +F+ +D +  ++ DE HHA GNHPY +I+K++Y      + +PK+FGMTASP     V +
Sbjct: 267 SFIRMDQINLLIFDEAHHAKGNHPYARIIKDYYITEPDKERRPKIFGMTASP-----VDA 321

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD-QSKFCGSDLK-GKLEV 276
             D +   ++LE  L S++ TIE            ++S  F   Q +    D K   LE 
Sbjct: 322 LTDVKIAAAQLEGLLHSEIATIE------------QDSASFKQIQKEVVEQDCKYSALE- 368

Query: 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC 336
               F  +L K    Q+   ++     K L   L    +   +C+D    I   E     
Sbjct: 369 --PPFTTNLHKKIQEQVRYNRNF---AKALSHSLEMSSSLGSWCVDRFWQIFLTEET--- 420

Query: 337 LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSA--LPLADKIFLDFGFDYSKAVDLGY 394
           L ++     +  I+   + +    +EEV ++I     LP+                 L  
Sbjct: 421 LARMAAQTAQDNIFADRAEREHVAIEEVRNIIKQHQFLPVTKT--------------LQD 466

Query: 395 ISTKLHELL-QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL--THLTVAYLTG- 450
           +S+K+  LL QL L F   T   CIIFVE+   A ++   +  +P     +L  A L G 
Sbjct: 467 LSSKVLCLLGQLELRFSAPTDHKCIIFVEKRNTAMILAHLL-SLPGTGPLYLKPAALVGN 525

Query: 451 -STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
            S  S  A++ K Q   +  FR G+ N L AT V EEG+ + +C  VIRFDL  +V  YI
Sbjct: 526 PSDNSPLAMSYKEQVMTITKFRRGEFNCLLATSVAEEGIDIADCKIVIRFDLFNSVIQYI 585

Query: 510 QSRGRARQHNSQFILMLERGNLK------QRNKLFDIIR---SERSVTDTALSRDPEACF 560
           QS+GRAR  NS++I M E GN K      Q N    +IR   S        +  DPEA  
Sbjct: 586 QSKGRARHLNSEYICMAELGNGKHTRAKIQANYDLSLIRQFCSTLPEDRKIVGWDPEAAL 645

Query: 561 LKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLP-SDKYYTPKPIFKYKSAEEAYE 619
                    + +I+ STGA +T   S+ ++  +   L  +D+  +P  +     +E  Y 
Sbjct: 646 HHGER--DHEFHIIPSTGAKLTWTGSLVVLSTFASSLQVNDETLSPSYMVSLIGSE--YI 701

Query: 620 CELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLI 679
           CE+ LPS +P  ++ G   +NK  ++     E C KL + G +++HL P+        L 
Sbjct: 702 CEVQLPSRSPILSVSGTLQKNKAEARCSAAFEMCMKLIKGGFISNHLQPTFAR----KLP 757

Query: 680 SKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVL 739
           + +N  L  A ++++++ +       +  R G    + L   K     ++     S  + 
Sbjct: 758 AMRNARL--AISSEKRDRYNMRVKPEVWSRRGPASSLFLTVLKLRAPGALNRP--SQPLA 813

Query: 740 LIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLF 799
           L+  E+  ++    L      +++   +S    +HLD  ++   + F    F  +F K++
Sbjct: 814 LLTREVLPELPGVPLFFGNCGRSIAEVISVVKPMHLDEIRLDSIRVFTLRIFKDIFSKVY 873



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 147/399 (36%), Gaps = 98/399 (24%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTT-------- 1068
            +P+ VV   Y  P+++ R+ES M+A        C   N  +   L LEA+T         
Sbjct: 1043 LPVKVVAMAYNFPAIIHRIESNMIALDA-----CRMLNLQVRPDLALEAMTKDSSNSDEQ 1097

Query: 1069 ------LGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
                         + ERLE LGD  LK A +  LF   P  +E +    R   +CN  L 
Sbjct: 1098 DQEKIDFQAGMGNNYERLEFLGDCFLKMATTIALFTRIPDSNEFEYHVERMLLICNQNLF 1157

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
             +   + LQ YIR   FD R W                            + Q  K   G
Sbjct: 1158 NVALKKNLQEYIRSKQFDRRSW----------------------------YPQGLKQKAG 1189

Query: 1183 KP--CDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCIT 1240
            K       H  +  K+IAD  EA+IGA Y+                + + +++     + 
Sbjct: 1190 KAQGAQNSHS-LADKSIADVCEAMIGASYLS------------YADEGNFDMAFKSPALL 1236

Query: 1241 RASLR--SY------VPRINEIKDIESKIGYEFTVKFLLQE---------------AITH 1277
            R++ +  SY      VP    ++ +   +     V FL ++                +++
Sbjct: 1237 RSAFKHPSYPRQFESVPNYQRLEFLGDALLDMVCVDFLFRKFPDADPQWLTEHKMAMVSN 1296

Query: 1278 ASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKA----------- 1326
              +         Y+ + H S ++ +QI +YV +     +  ++   +             
Sbjct: 1297 HFLGSLSVELGFYRRVLHFSGVMANQIKDYVDALTHARQEAEAAAQISGVISQDYWLNVQ 1356

Query: 1327 --PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPI 1363
              PK L D++E+ +GA+ +D+  N  +V   F+  + P 
Sbjct: 1357 HPPKFLSDVVEAYIGAIFVDSGYNYSQVQAFFEKHIRPF 1395


>gi|195995859|ref|XP_002107798.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens]
 gi|190588574|gb|EDV28596.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens]
          Length = 1418

 Score =  243 bits (619), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 209/685 (30%), Positives = 343/685 (50%), Gaps = 97/685 (14%)

Query: 38  STNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFK 93
           +T+ +   PR YQL +  +A+ RNTI  LETG+GKT+IAV++I+    ++++++++ G  
Sbjct: 47  NTSRMKLSPRKYQLDLAVIAQERNTIVYLETGSGKTLIAVLVIRQLYRELSKSLQAGG-- 104

Query: 94  KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
           K  IFL  TV LVHQQ   I   T F V + +G    D+  S  W+   +KN+V+V TPQ
Sbjct: 105 KRAIFLVNTVPLVHQQAKFIADQTSFCVGKLFGKCNSDKRRSN-WKDFFDKNNVIVGTPQ 163

Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVV 212
            LL  L    +++ ++  IV DECHHAT +HPY++IM      +   +PK+ G+TA   +
Sbjct: 164 TLLRLLELNIVNMQMINLIVFDECHHATKHHPYSRIMDAVKALEEQGRPKILGLTA--CI 221

Query: 213 RKGVSSAMDCEGQISELESTLDSQV-----FTIEDKTEM---EVFVPSAKESCRFYDQSK 264
            KG         +++ELE  L S +      T  DK +    E  +         ++Q +
Sbjct: 222 FKGECKPSKVPQRLAELEEKLSSTIAIPGYLTYIDKNKTPPTEYVIDYETTETSIFEQVE 281

Query: 265 F---CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCL 321
               C   LKG        FDA  S       N ++      K  R+Q S     +L   
Sbjct: 282 ALSDCSFLLKG--------FDAMYS-------NSFES-----KAQREQQSTSLQLVLTAF 321

Query: 322 DELGLICAYEAVKI---CLEKVLKA-QEECEIYR-QSSLQCKY-----FLEEVLHVIGSA 371
           DE  L      ++I     E ++K  ++E  ++R +  +  K      +   V+ ++ + 
Sbjct: 322 DEAILTVNTFGLRIFPLVAESIVKCIRKELRMFRGKDGIDYKLSASNSWFRPVIRILEAK 381

Query: 372 LPLADKIFLDFGFDYSKAVDLG---YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAK 428
           L              S  +D     Y  +   +LL +  +F +  Q   IIFV+R + A 
Sbjct: 382 L--------------STKIDESHPCYTCSHFAKLLDVLTTFKE--QDTGIIFVDRRVTAF 425

Query: 429 VVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKVQ------KEVLESFRGGKVNLL 478
           V+   + ++    P L HL V  + G ++    L  + Q      +EV+  FR  K NLL
Sbjct: 426 VLHELLVRISHTDPNLAHLNVGCVIGRSSIKSQLLGQAQMSRYEQEEVMNRFRRHKYNLL 485

Query: 479 FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF 538
            AT+V+EEG+ V  C+ VIRFD     SSY+QSRGRAR  +S ++LM+ R NL    + +
Sbjct: 486 VATNVLEEGVDVSECNVVIRFDRVNHFSSYLQSRGRARADDSSYVLMINRENLDAFMEEY 545

Query: 539 D-------IIRSERSVTDTALSRDPEACFL--KACTYVKTKS--YIVESTGASVTTDSSV 587
           +        +RS   + +T +S   ++ F    + T   T S  ++VE+TGA V   S++
Sbjct: 546 NSWHSVEKFLRSSPELLNTIVSGISKSLFSNDNSTTDASTISSKFVVETTGAEVNLFSAI 605

Query: 588 NLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLP-SNAPFQTIV-GPTSRNKNLSK 645
           +++ RY + + + K     P F+Y++ ++    ++ L  SN P +T + GP  ++K ++K
Sbjct: 606 SVLLRYSQSMINGK----SPEFEYETNDDRTRAKIKLIFSNPPEKTTIEGPMMQSKKIAK 661

Query: 646 QLVCLEACEKLHQVGALNDHLLPSV 670
           +   LEAC+ LH+VG + D+L P+V
Sbjct: 662 KASALEACKFLHEVGEITDNLEPNV 686



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 87/411 (21%), Positives = 160/411 (38%), Gaps = 62/411 (15%)

Query: 905  KNLKDMVVLAIHTGRIYSIVEIV---NNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIH 961
            KN+ D++++  +   + + V++    N     SP      D   T+  Y+  KY   + +
Sbjct: 863  KNVNDLLIVKNYGHWVTNQVDVYALRNICYDLSPLSRFPTDKRLTYKAYYHRKYHTRIEN 922

Query: 962  PGQPLLRLKQSHNPHNLLVNFN-----DGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVD 1016
              QPL  +K  H     LV+ N     +     K S SG         VH+ PEL +   
Sbjct: 923  SNQPLFAVKTLHRFPVALVHENCISPCNNTTESKKSNSGF--------VHLVPELCLVHP 974

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHS---------------RNFHIPSSL 1061
               S+      LP  + ++E   LA ++ + I C S               R        
Sbjct: 975  FSASMWMLSQFLPLTLYKIEKNCLAYEMIDYIQCASILKKVTEPRRKKLLLRETTNLVDR 1034

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            I ++LT     E  +  +++ +G   +K  ++ +L+ T P  +   L+ +R        L
Sbjct: 1035 ITQSLTLPIAEEQCNFNKIKYIGKVFIKLVLAVNLYQTCPDDNSYALTMKRRQQSSEFYL 1094

Query: 1122 HKLGTDRKLQGYIRDSAFDPRR-WVAPG-QLSLRPVPCECGVDTLEVPLDGKFFTQDTKV 1179
              L     +  YI    F+  + W+ PG   S+R     C  D+          + D+ +
Sbjct: 1095 FNLAAKTNIPSYIISKPFNQLKCWIPPGFTFSIR-----CKDDS----------SSDSAL 1139

Query: 1180 VVGKPCD-MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDA---------- 1228
                  + +   ++  K+IA+C  A++GA          L  +KWLG             
Sbjct: 1140 AERTIIESITDNFLSVKSIAECISAIVGALLFPDNETEGLNFLKWLGFAIEPFSSISNGF 1199

Query: 1229 DLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
            D+    +   I  ++ +S++ ++++    E  +GY+F     L  A TH+S
Sbjct: 1200 DVWNEKITHMIEESNSQSWLEKLHK---FEENLGYKFINIDYLILAFTHSS 1247


>gi|358058780|dbj|GAA95743.1| hypothetical protein E5Q_02400 [Mixia osmundae IAM 14324]
          Length = 1610

 Score =  243 bits (619), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 203/671 (30%), Positives = 317/671 (47%), Gaps = 74/671 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGF------KKLIIFLA 100
           R YQ ++F+ AK+ NTI  ++TGAGKT++AVMLI   A  ++          +KL+  L 
Sbjct: 96  RQYQHELFQKAKQSNTIIRMKTGAGKTLVAVMLILYEAARLRREMMVQERPSRKLLCMLV 155

Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
           PTV LV+QQ   IR  T  +V  + G   V  WD + WQ E +  DV+VMTPQILL+ LR
Sbjct: 156 PTVTLVNQQVAAIREQTSLQVRGFRGDMLVSAWDLRTWQIEFDLADVVVMTPQILLNVLR 215

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK------------SDNKPKVFGMTA 208
            AF  ++ +  ++ DE HHA   HPY  I+ EFYH             SD  P++ G+TA
Sbjct: 216 SAFWRIENIALLIFDEAHHARKKHPYAHILDEFYHPLKRKLARSEAEMSDRLPRILGLTA 275

Query: 209 SPVVRKGVSSAMDCEGQISELESTLDSQVFTI-EDKTEMEVFVPSAKESCRFYDQSKFCG 267
           SPV      +A D    IS+LE  +D+ +  + E   E+  +     E C  Y   +   
Sbjct: 276 SPVW-----TASDLVSAISDLERRMDATLVEVKEHAAELAQYNRKPSERCLTY---RLDR 327

Query: 268 SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMD--DKHKTLRKQLSDYHAKILYC---LD 322
           + +K   E+          +L+ S +    D+    +   ++++L      I  C     
Sbjct: 328 AGIKTPFEI----------RLESSSIASLLDLKFWQRIDQVKERLGLLGVDIYICEALAQ 377

Query: 323 ELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLD- 381
            L    +  AVKI  + V +     E + ++ L    F++ + H   + L  + K  +  
Sbjct: 378 ALARSTSDAAVKI--DYVPQ-----EYWNEACLLHSSFVDVLEH---TTLTESGKRHISD 427

Query: 382 ------FGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435
                 +G   S       IS K+  LL    ++        IIFV+      V++R V 
Sbjct: 428 SPSTAWYGHLASADSSSSDISQKVRILLDHLETYRACKDFTAIIFVQTRYQTAVLQRIVS 487

Query: 436 KVPFLTHLTVAYLTGSTTSVDA------LTPKVQKEVLESFRGGKVNLLFATDVIEEGMH 489
           K  +L  L+  YL GSTT   A      + PK Q + ++S R G+ N LFAT V EEG+ 
Sbjct: 488 KAAWLDFLSTNYLVGSTTGNPADMAKGVMRPKQQLKPVQSIREGRCNTLFATSVAEEGLD 547

Query: 490 VPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD 549
           + +C+ ++RFD   T+  YIQSRGRAR  NS ++++ E  +  +      +  SE+ + D
Sbjct: 548 LSSCNLIVRFDPVSTLVGYIQSRGRARAVNSDYLVLAE-ADTSEEYDWQTLTASEQQMLD 606

Query: 550 TALSRD--PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR-YCEMLPSDKYYTPK 606
               RD   E       T   T +Y+V S+GA +T  SSV  +++ +            +
Sbjct: 607 HTGQRDIFEEGELSNGETVSATPTYLVPSSGALLTLSSSVMTLNQAFAGQRSEGTQLFKQ 666

Query: 607 PIFKYKSAEEA-YECELTLPSNAPF----QTIVGPTSRNKNLSKQLVCLEACEKLHQVGA 661
           PI++  S +   Y   + LP         +TI G  + +++ +K L   EA   L + G 
Sbjct: 667 PIYEIVSTDTGDYAATVILPPVGTLYEHHRTITGAVASSRSAAKALAAFEAVILLFKAGI 726

Query: 662 LNDHLLPSVEE 672
           +N+ L+P  EE
Sbjct: 727 INERLVPHYEE 737



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 143/360 (39%), Gaps = 88/360 (24%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            ++EALT  G     S E +E LGDSVLK   S HL+L YP K EG L+  R+ +V N  L
Sbjct: 1073 MIEALTLPGSAVGRSYESIETLGDSVLKVLTSVHLYLAYPLKSEGALTCLRTNSVENVYL 1132

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVV 1181
            H    +  L  Y+         W+        P   E   D                  +
Sbjct: 1133 HHKAVESSLGKYLIHERMRLNTWL--------PRDAEHSAD------------------M 1166

Query: 1182 GKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCI-T 1240
            G  C+   R +  + ++DC E+++GA Y+ GGL  A+   +   +      S     I  
Sbjct: 1167 GDGCEF-ERKIQRRALSDCIESILGAAYLTGGLSMAMDTARAFNLPLGDGASWRSRSIEA 1225

Query: 1241 RASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS------------------VQE 1282
            R   RS  PRI E++D+   +GY F+    L +A+TH S                  + +
Sbjct: 1226 RRRERSVSPRIGELEDL---VGYSFSNNDCLIQALTHRSYLSPTTPSYEREEFLGDAMLD 1282

Query: 1283 FYCYQNLYKHLQHCSTLLLSQIT--------------------EYV-------------- 1308
            F+    LY      +   LS++                     EYV              
Sbjct: 1283 FWAITRLYARFDGITPQQLSRLRALLVCNGTLGYVAMLRLRLGEYVLHNADEFTDQLEIA 1342

Query: 1309 ----KSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1364
                ++ P P E  +       PK LGD +E+I GA+ +D+  + + V++ F  IL P++
Sbjct: 1343 QQQAEAMP-PAEFCEQVWFWDPPKVLGDCVEAIAGAIFVDSGGDPELVFKYFDRILGPLM 1401


>gi|5019620|dbj|BAA78691.1| helicase-MOI [Homo sapiens]
          Length = 1924

 Score =  242 bits (618), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 214/740 (28%), Positives = 351/740 (47%), Gaps = 115/740 (15%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIA-VMLIK-----DIAQAIKSNGFKKLII 97
           + PR YQ+++ E A   NTI  L TG+GKT IA   L+K     D+ +    NG  K  +
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIASTTLLKSCLYLDLGETSARNG--KRTV 99

Query: 98  FLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
           FL  + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L+
Sbjct: 100 FLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALN 159

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVS 217
            L+  +LSL  +  +V DECH A  +HPY + MK       + P++ G+TAS  +  G  
Sbjct: 160 VLKNGYLSLSDINLLVFDECHLAILDHPYREFMK-LCEICPSCPRILGLTAS--ILNGKW 216

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLE 275
              D E +  +LE  L S     E  T++ V      + C        CG  +D  G  E
Sbjct: 217 DPEDLEEKFQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYE 270

Query: 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYE 331
               + + +L+ +    ++ +    D     ++ LSD  A ++    +C D++  +   E
Sbjct: 271 RLLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE 330

Query: 332 AVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVD 391
                L+K +K ++E E++R+  L    FL ++  +       A    LD  F   K + 
Sbjct: 331 -----LQKYIKHEQE-ELHRKFLLFTDTFLRKIHALCEEHFSPAS---LDLKFVTPKVIK 381

Query: 392 L-----GYISTKLHELLQL----------FLSFGKS-----------------------T 413
           L      Y   + H    +          ++S+  S                       T
Sbjct: 382 LLEILRKYKPYERHSFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFT 441

Query: 414 QVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG--------STTSVDALTP 460
            +LC IIFVER   A V+ R +K+     P L +++  ++TG           +++A   
Sbjct: 442 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNNTMEAEFR 501

Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
           K Q+EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S
Sbjct: 502 K-QEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 560

Query: 521 QFILMLERG-------NLKQRNKLFDIIRSE--RSV----TDTALSRDPEACFLKACTYV 567
            +I++ +         +LK    +  I+R++  +SV    TD     D +  F       
Sbjct: 561 NYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDHVF------- 613

Query: 568 KTKSYIV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTL 624
               Y++  +  G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L L
Sbjct: 614 --PPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYL 671

Query: 625 PSNAPFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLI 679
           P N+P + +IVGP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L 
Sbjct: 672 PINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLH 731

Query: 680 SKKNESLPG-AGTTKRKELH 698
            ++  S+PG  G+TKR++ +
Sbjct: 732 DEEETSVPGRPGSTKRRQCY 751



 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
            + S+    I   SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF T
Sbjct: 1277 MDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1336

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            YP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1337 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1386



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1807 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1866

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1867 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1918

Query: 1441 KRI 1443
             ++
Sbjct: 1919 PQV 1921



 Score = 44.3 bits (103), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 957  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1016

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1017 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1075


>gi|242763899|ref|XP_002340666.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218723862|gb|EED23279.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1494

 Score =  242 bits (618), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 188/651 (28%), Positives = 313/651 (48%), Gaps = 64/651 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFKKLI-IFLAP 101
           PR YQ++++E AK  NTIAVL TG+GKT+IA++L+K I Q     +  G +  I  FL  
Sbjct: 81  PRDYQIELYERAKHENTIAVLATGSGKTLIAILLLKHIIQNELIDRGRGQRHRISFFLVD 140

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V LV QQ  V++ + D  V   YG  G+D W+   W      N V+V T  IL   L  
Sbjct: 141 SVTLVFQQTAVLKNNLDQPVASIYGDMGLDLWNKDVWTGYFTTNMVIVCTADILTQCLLH 200

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSA 219
           ++++++ +  ++ DE HHA   H Y +IMK+ Y K++  ++P++FGMTASP+  K     
Sbjct: 201 SYITMEDINLLIFDEAHHAKKEHAYARIMKDGYLKANPASRPRIFGMTASPLDAK----- 255

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEM-EVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
            D      ELES L S++ T  +   + +V     +E  ++    K   + L   LE  +
Sbjct: 256 RDPVKAAHELESLLHSKIATASNLNILRQVVGRPEEEQWKYAALKKPFKTALYQTLENQY 315

Query: 279 SKFDASLSKLQGS-QLNCY-----KDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
              +   S    S Q + Y      D         K L  +H KI      LG+  + + 
Sbjct: 316 GDMECLKSIFAFSLQASSYLGPWCADRVWADALSEKLLPRFHGKITSACKRLGVETSAQK 375

Query: 333 VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDL 392
            +  + ++ +  E    Y + S                            G D      L
Sbjct: 376 AESEISRLKQMSEMIANYERPS----------------------------GLDI-----L 402

Query: 393 GYISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVKK--VPFLT-HLTVAYL 448
             +S K+  L + L   F ++    CI+F ++   AK++E   ++  VP +   + V   
Sbjct: 403 EQLSDKVQVLYRHLARRFEEAPNTKCIVFTKQRNTAKLLEAVFRELSVPNMRPGVLVGIR 462

Query: 449 TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
            G  + +++   +  K  +E FR G++N +FAT V EEG+ +P+C+ V+RFDL  T+  Y
Sbjct: 463 PGDISGMNSTYHQQFKATIE-FRKGELNCIFATSVAEEGLDIPDCNLVVRFDLYDTLIQY 521

Query: 509 IQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSV--------TDTALSRDPEACF 560
           IQSRGRAR  NS +  M+E  N++   +L ++ ++E  +         D  L    ++  
Sbjct: 522 IQSRGRARSLNSIYAHMVEIDNMEHETRLDEVHQAEEVMRRFCEALPEDRLLGDKSDSLN 581

Query: 561 LKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYEC 620
                  + + Y +ESTGA++T  S++ ++ RY   L ++ + +  P +     +  YEC
Sbjct: 582 AILERDSRKRQYKIESTGATLTYHSAMTVLARYASSLINEAHSSLHPCYVTTQTKGLYEC 641

Query: 621 ELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVE 671
           E+ LP  +P + ++G     K+L+KQ    E C  L + G LNDH + + +
Sbjct: 642 EVILPEASPIRGLIGKPEPRKSLAKQSAAFETCILLRRHGLLNDHFVSTYQ 692



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 135/347 (38%), Gaps = 63/347 (18%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P  V  S    P+V+ R +S ++A +  + +        +     LEA+T         
Sbjct: 976  IPAMVATSCLAFPAVITRFDSYLVARECTDTLG-----LKVQLEYALEAVTKDSDNTGEH 1030

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G  +++  ERLE LGD  LK A S  LF+  P   E      R   +CN  
Sbjct: 1031 RLEQIHFQRGMGKNY--ERLEFLGDCFLKMATSISLFVESPNDQEYDFHVNRMTLICNRN 1088

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L      RK+  +IR   F  R W   G   LR                GK         
Sbjct: 1089 LFNTAIQRKIYEHIRSKGFSRRNWYPDGMKLLR----------------GK--------- 1123

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYM-MKWLGIDADLEVSLVDDCI 1239
              +   + H  +G KTIAD  EALIGA  + GG +    M +K +    + +   VD+  
Sbjct: 1124 ANEDQGLTHA-LGEKTIADVCEALIGASLLSGGPVNRFDMAVKAVTALVNSDHHNVDNWA 1182

Query: 1240 TRASLRSYVP-RINE--------IKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLY 1290
              +S  S  P +I E         + +E K+GY F    LL+ A TH S    +     Y
Sbjct: 1183 EYSSRYSLPPYQIKEADGFEKDLARQVEMKLGYCFQYPKLLRSAFTHPSYPSAWSTVPCY 1242

Query: 1291 KHLQHCSTLLLSQ--ITEYVKSFP--KPGETTDSGPSMKAPKALGDL 1333
            + L+     LL    + +  + FP   P   T+   +M + K LG L
Sbjct: 1243 QRLEFLGDSLLDMVCVEDLYERFPDRDPQWLTEHKMAMVSNKFLGSL 1289


>gi|167234451|ref|NP_001107840.1| Dicer-2 [Tribolium castaneum]
 gi|270002830|gb|EEZ99277.1| hypothetical protein TcasGA2_TC001108 [Tribolium castaneum]
          Length = 1623

 Score =  241 bits (616), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 200/697 (28%), Positives = 336/697 (48%), Gaps = 65/697 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI---KSNGFKKLIIFLAPT 102
           PR YQ+ + E+A R NTI  L TG+GKT IA+M++K +   I    S+G  K+ + L  +
Sbjct: 9   PRNYQVNLMEIAIRENTIIYLPTGSGKTFIAIMVLKQLCAPILRPYSDG-GKISVILVNS 67

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V LV Q    +R H  F V  Y G   VD W    W+++ NK  V++MT QI+++ +   
Sbjct: 68  VALVDQHGKYVRDHATFSVGTYTGEMNVDFWSEAEWEQQFNKYQVVIMTSQIMVNLINNR 127

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRK-GVSSAMD 221
           F+ L  V  ++ DECHH   + P  +IMK F H   +KP+V G+TA+ +     +S  MD
Sbjct: 128 FIDLGKVNLMIFDECHHGVEDQPMRQIMKHF-HSCTDKPRVLGLTATLLNGNCKLSKVMD 186

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK-------- 273
              +I  LE T  S+V T+E    ++V V  +      +   +     L  K        
Sbjct: 187 ---EIRSLEVTFHSKVATVEG---LDVVVGYSTNPQELFKVCQPGALSLDAKQVLNNLRQ 240

Query: 274 ----LE-VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
               LE ++      S++ LQ   L   +   D  K+LR  +SD    ++  ++ LG   
Sbjct: 241 LINDLEHINIKDEQNSVNLLQSETLKPLEP-SDVLKSLRNLISD----LMIHIEMLGAFG 295

Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
            + A    + ++ + ++ C+ +     Q    L  V+ ++G+   L ++     G++  +
Sbjct: 296 GHIACVAHMIQIERIKKHCQNH-----QLFIVLNYVMTIMGTTKLLLEETMA--GYEPLE 348

Query: 389 AVDLGYISTKLHELLQLFLSFGKST--QVLCIIFVERIIAAKVVERFVKKV----PFLTH 442
            +   + S K+ ++ ++   +   +  ++ C++F +R   AKV+   + K     P   H
Sbjct: 349 KIR-KFSSDKVLKVFEILDEYKTKSDEELCCLVFTKRRFTAKVLHHIIDKASQVDPKFYH 407

Query: 443 LTVAYLTGST------TSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496
           +   ++ G+       T  +    K  +EVL SF   ++N+L +++V+EEG+ +P C+ V
Sbjct: 408 IKSNFVVGNKNNPYNDTRENLYITKKNREVLNSFVSKEINVLVSSNVLEEGVDIPKCTLV 467

Query: 497 IRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRS-ERSVTDTALSRD 555
           I+FD  +   SYIQS+GRAR   S +  ++E  ++ + +K +   +  E  V D  + ++
Sbjct: 468 IKFDKSEDYRSYIQSKGRARHIKSLYYTIVETTDVAKYDKKYSAFKEIENLVNDLLIGKN 527

Query: 556 PE------ACFLKACTYVKTKSYIVES-TGASVTTDSSVNLIHRYCEMLPSDKY--YTPK 606
            E      +         K + Y V     A V   S+V L+ RYC  L SDKY  Y P+
Sbjct: 528 SERDHPNLSEIRNMYNEDKLEPYYVNGPNSAQVNMTSAVALLCRYCSNLASDKYTTYAPE 587

Query: 607 PIFKYKSAEEAYECELTLPSNAPF-QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDH 665
             ++  S+       + LP   P    IVGP   NK  +K+   L AC KLHQ G L+++
Sbjct: 588 WYYEEDSSSAKLRVVIFLPVVCPLIDPIVGPYMHNKKDAKRAAALVACIKLHQCGELDNN 647

Query: 666 LLP---SVEEPSENNLISK-KNESLPGAGTTKRKELH 698
           LLP    ++E   + L +    E    AG  K+K LH
Sbjct: 648 LLPWKKQLDEADVSYLFTHWPQEKESDAGNKKKKRLH 684



 Score =  109 bits (272), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 121/260 (46%), Gaps = 51/260 (19%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            I +ALT     +  ++ERLE LGDS LK+  S ++   +P  +EG+ +  +   V N  L
Sbjct: 1146 IYQALTAAEANDIVNLERLETLGDSFLKFVASLYIIFKFPTYNEGKSTTLKGKLVSNKNL 1205

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFT------- 1174
            + LG  + L G +++S   P  WV P         C C   T+   +  K ++       
Sbjct: 1206 YYLGVRKNLGGILKNSDLSPSDWVPP---------CFCIPQTISKAIGNKEYSVVSLFNC 1256

Query: 1175 --------------------------QDTKVVVGKPCD-MGHRWMGSKTIADCAEALIGA 1207
                                       D +   G  C+ +  +++G K+IAD  EAL+GA
Sbjct: 1257 CISPEEQVSGNLNRKTLSDMTTEEIAPDEENSYGNMCNFLNKQYVGDKSIADSVEALLGA 1316

Query: 1208 YYVGGGLIAALYMMKWLG-------IDADLEVSLVDDCITRASLRSYVP-RINEIKDIES 1259
            Y++ GG+   +  M+W+G       I   +E + VD  + + S ++ V   + + ++IE 
Sbjct: 1317 YFLSGGIQGGIKFMEWIGILPLSEQIQRLIETTQVDPVLNKKSTKTDVDFHMPQWREIEQ 1376

Query: 1260 KIGYEFTVKFLLQEAITHAS 1279
            ++GY FT +  L +A+TH+S
Sbjct: 1377 RLGYTFTNRAFLLQALTHSS 1396



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 9/130 (6%)

Query: 919  RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNL 978
            ++Y + ++  + SA S F  +   +   FV+Y+SEK+ + ++ P QPLL +K      N 
Sbjct: 870  KMYVVTKVCPDKSALSRFPNH---EYPNFVSYYSEKHSLSILDPSQPLLLVKGLSERLNA 926

Query: 979  LVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESL 1038
               F   G  GK  K  M     ++  ++ PEL+++ + P  +      LPS++ RL  L
Sbjct: 927  ---FKPRGAGGKRKKEKM---YEELEEYLIPELVIKQEFPSCLWIQARFLPSILSRLAYL 980

Query: 1039 MLASQLREEI 1048
            +   QL+ +I
Sbjct: 981  LKLQQLQVDI 990


>gi|195425457|ref|XP_002061021.1| GK10670 [Drosophila willistoni]
 gi|194157106|gb|EDW72007.1| GK10670 [Drosophila willistoni]
          Length = 1720

 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 285/1088 (26%), Positives = 462/1088 (42%), Gaps = 156/1088 (14%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAPT 102
            R YQ ++ +    RN I  L TGAGKT +A++ +K    D  + I+  G  K  IF+  T
Sbjct: 11   RSYQSRLVDYLTERNGIVYLPTGAGKTFVAILTLKRFSLDFDKTIEDGG--KRAIFMCNT 68

Query: 103  VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
            V L  QQ    R  T+F+V  Y G +GVDEW    W  EI +  VLV T Q++LD +  A
Sbjct: 69   VELARQQALACRSLTNFKVGFYVGDQGVDEWSRSKWDVEIREKQVLVGTAQVMLDLMLHA 128

Query: 163  FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASPVVRKGVSSAM 220
             LSL  V  ++IDECHH TG HP+ + M+ F H   N   P+V G+T   V+ KG +   
Sbjct: 129  HLSLGSVSIVIIDECHHGTGRHPFREFMRLFLHVRPNVQLPRVVGLTG--VLIKG-NEIN 185

Query: 221  DCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKESCRF----YDQSKFCGSD-LKGKL 274
            + +  +  LE+T    + T+ D  EME V + S K    F    Y   KF   D +K  +
Sbjct: 186  NVKKMLKNLETTYHGNIITVSDMKEMENVMLYSTKPKEFFLLYGYGTHKFELIDTIKYYI 245

Query: 275  EVSWSK---FDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYE 331
            E    K   +D     ++ S     +   +K    +  L+D+    +Y L+E G+  A  
Sbjct: 246  EAFHKKLDNYDIGKQPVRFSNGLQQQREPNKKNFAKSLLNDF----IYQLEEYGIYVASI 301

Query: 332  AVKICLE--KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKA 389
            AV   L   ++ K Q E  + R          + + H + S L       +      ++ 
Sbjct: 302  AVVALLVEFEIKKRQAETLVLRSIYRMAISLCDNIRHFLVSKLREDIDDDMSDDNVDTEE 361

Query: 390  VDLGYISTK----LHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE----RFVKKVPFLT 441
                + + +    LH L Q F S      + C++FVER    K +     +++  VP L 
Sbjct: 362  NIYNFSTPRVQRFLHYLKQTF-SNKNPKDICCLVFVERRYTCKSIYGMLLKYIASVPELK 420

Query: 442  HLTVAYLTGSTTSVD-----ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496
            ++ V         ++      L  K Q   ++ FR G+ NL+  + V+EEG+ V  C+YV
Sbjct: 421  NVLVPQFMVGRNGINQNFDTVLERKWQNSAIQQFRDGEANLMICSSVLEEGIDVQACNYV 480

Query: 497  IRFDLPKTVSSYIQSRGRARQHNSQF-ILMLERGNLKQRNKLFDIIRSERSVT----DTA 551
            I  D  KT +SY+Q++GRAR  ++ F IL  E    K   ++ D   + R +     D  
Sbjct: 481  IILDPLKTFNSYVQTKGRARSKDAVFLILASESEKPKTAKRIMDYQNAHRDIANYLQDRV 540

Query: 552  LSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK 610
            L R +P+   +          YI E TG+ +   S++ L+HRYC+ LPSD +    P +K
Sbjct: 541  LERAEPKMDEINEHFRDIIPPYINE-TGSLLLASSALALLHRYCQTLPSDAFGFNMPWYK 599

Query: 611  Y-----------KSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQL-VCLEACEKLHQ 658
                        KSAE      + LP +   ++ +     N N S ++      C++L++
Sbjct: 600  LLNPDERVQHFGKSAETKQVVSINLPLSTKLRSTIYSDLMNCNKSAKISAAFNVCKELYK 659

Query: 659  VGALNDHLLPS-----VEEPSENNL---------ISKKNESLPGAGTTKRKELHGTTPIR 704
            +G LN   LP+     +++ S+ +          ++K N     +G T +  ++  T + 
Sbjct: 660  LGELNQKFLPTTLTDRLKDVSDIHFKHWKKYGDDVTKTNRKEDKSGNTSKYPVNCPTQLY 719

Query: 705  ALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVG---------NFELE 755
                R GE C    +AY+           Y+     +   L    G             E
Sbjct: 720  DTRPRVGETC----YAYEILLKPHFERNEYTAH---MHDALQTGRGYALLLRKRLPPLAE 772

Query: 756  LYLVSKTVKATVSSSGQVH----LDADQMSKAKCFQELFFNG---LFGKLFVKSKSSGSR 808
            + L S   K  VS + Q H       +Q+     F  + F     ++   FV  K S   
Sbjct: 773  MPLFSSHGKIHVSVAEQPHEVILKTEEQLDHLHQFHIMLFRDILKIWQSYFVLDKRS--- 829

Query: 809  EFFLKRETNSLWSPSYMYLLLPLEIVNTF-GDGSWRINWSGINPCASVVEFIKEKSFLGA 867
                  + NS       YL++PL+I ++  G+G+  I+W+       V +F +     G 
Sbjct: 830  ------KENS-------YLVVPLDIKSSGKGEGNI-IDWN------LVTQFYR-----GL 864

Query: 868  AQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRI-YSIVEI 926
             Q      +    +  PC     GK V        D    K M+V  +H  +  +S++E 
Sbjct: 865  PQSRTLSPDQRRRQEPPCPDDFEGKIVTQWYASYQD----KRMLVTKVHRDKTPFSMME- 919

Query: 927  VNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVL---IHPGQPLLRLKQSHNPHNLLVNFN 983
             +N S  + +D            Y   KY  V+   +H  Q L+ +++     N  +   
Sbjct: 920  -SNQSENNYYD------------YTMSKYKNVIGDVVHQNQCLIEVRELTQQLNFYI--- 963

Query: 984  DGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQ 1043
                + +   SG +  K +  + + PEL      P  +   L  LPS++ RL  L+ A  
Sbjct: 964  ----AHRVKTSGQS--KARARIILIPELCFNFQFPGDLWAKLLFLPSILNRLHYLLHAEA 1017

Query: 1044 LREEINCH 1051
            LR+ +N +
Sbjct: 1018 LRQRMNTY 1025



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 108/268 (40%), Gaps = 50/268 (18%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S  L A+T+ GC + F MERLELLGDS LK + + +L   +   +EG L+  +S  V N 
Sbjct: 1198 SEFLTAITSSGCSDVFDMERLELLGDSFLKMSATLYLSSIHSNWNEGVLTQIKSTLVSNR 1257

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQ------LSLRPVPCECGVDTLEVPLDGKF 1172
             L     +  +   I  + F P+  W  PG       L+L     E     L   L    
Sbjct: 1258 NLLYCMNETDIPSRINSTLFTPKYTWKPPGLSLPHNILNLWQEQPEVAKFVLPRNLCALQ 1317

Query: 1173 FTQDTKVVVGK--PCD--------------------------MGHRWMGSKTIADCAEAL 1204
             T++    +GK  P +                          +G   + +K +AD  EAL
Sbjct: 1318 LTEEEIFSLGKLTPANFEKFLESCQANTNYTSTDYESEMNFCIGKSKLSNKVVADTLEAL 1377

Query: 1205 IGAYYVGGGLIAALYMMKWLGIDADLEV-----SLVDDCITRASLRSYVPRINEIKD--- 1256
            +G      G+     ++++ GI   +++      L+D  +   S R+   R     D   
Sbjct: 1378 LGVIVKNYGVQHGFRILEYFGICKQVDIGKPLSQLLD--LQLGSTRTRADRDPREIDGLL 1435

Query: 1257 -----IESKIGYEFTVKFLLQEAITHAS 1279
                 +E  +GY F  +  L +A+TH S
Sbjct: 1436 INYHYLERNLGYTFKDRAYLLQALTHPS 1463


>gi|402079303|gb|EJT74568.1| dicer-like protein 1 [Gaeumannomyces graminis var. tritici
           R3-111a-1]
          Length = 1607

 Score =  241 bits (615), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 216/707 (30%), Positives = 321/707 (45%), Gaps = 101/707 (14%)

Query: 6   NSLKRSFGEVHSPNPPDMGSS--GHDHAVDGPSSSTNSINFI--PRIYQLKVFEVAKRRN 61
           N ++ S G  ++ +    GS+  G D   D PS S   +  I  PR YQ+++FE AK++N
Sbjct: 130 NKVRLSQGSSNAKSNDKAGSTELGSDPTADKPSRS-QGMRIIEGPREYQIELFERAKQKN 188

Query: 62  TIAVLETGAGKTMIAVMLIKDIAQA---IKSNGFK-KLIIFLAPTVHLVHQQYDVIRVHT 117
           TIAVL+TG GKT+I+++LI+ I +     +S G + +   FL   V LV QQ   +  + 
Sbjct: 189 TIAVLDTGTGKTLISILLIRHIIEKELETRSQGKENRATFFLVDKVTLVWQQTKQLHSNL 248

Query: 118 DFEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDE 176
           DF +   +G      W D + WQK  + N V+V T +IL   L + ++++  +  +V DE
Sbjct: 249 DFAITGIHGDSVTHLWNDIEYWQKLRSDNMVIVCTAEILYTCLARGYINMRQINLLVFDE 308

Query: 177 CHHATGNHPYTKIMKEFY---HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTL 233
            HH   NHPY +I+K+FY      D +P+V GMTASP   K +      E   SELE  L
Sbjct: 309 AHHTKKNHPYARIIKDFYVTEEDPDARPRVLGMTASPFDTKTIH----IEKAASELERLL 364

Query: 234 DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFC----GSDLKGKLEVSWSKFDASLSKLQ 289
            S++ TI D   ++     A+E    Y    F      +DL  KLE              
Sbjct: 365 HSEIATIADDELLKAIGNRAEERNVPY---AFLPHREPTDLCKKLET------------- 408

Query: 290 GSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYE--AVKICLEKVLKAQEEC 347
                    +   H   +K  S   AKI+    ELG  CA     +K   +  L+ + E 
Sbjct: 409 ---------LLRSHSQFKKAFST--AKIVAS--ELGPWCADRLWELKFQDDSGLEGRAES 455

Query: 348 EIYRQSSL-------QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLH 400
              R++S        Q     E  L V  SAL                  D G  S  L 
Sbjct: 456 NSRRENSEWQMCETDQLGDLREAALIVKNSAL--------------GPPQDDGLSSKTLK 501

Query: 401 ELLQLFLSFGKSTQVLCIIFVER----IIAAKVVERFVKKVPFLTHLTVAYL--TGSTTS 454
            L  L  +F   T   CI+FVER    ++   +V+     V F  +L  AYL  +G   S
Sbjct: 502 LLEILEENFCSETSTQCIVFVERRDVAVLLTDLVQNPAMSVRF-PYLNAAYLIASGRGDS 560

Query: 455 VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
             +++ K Q+  + SFR  ++N LFAT + EEG+ +P C+ VIRFDL KT   YIQSRGR
Sbjct: 561 HTSISNKKQEATVWSFRLRELNCLFATSIAEEGLDIPGCNLVIRFDLHKTTIQYIQSRGR 620

Query: 515 ARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKT----- 569
           AR   S FI M E GN       +     ER++     +   +    +    V +     
Sbjct: 621 ARMAGSVFIQMTEMGNQDHMRSWYQHQADERTMRQFCAALPEDRILQRIGADVDSALHGD 680

Query: 570 ---KSYIVESTGASVTTDSSVNLIHRYCEMLPSD-------KYYTPKPIFKYKSAEEAYE 619
              + Y+V  TGA +T   S+N++  Y   LP +         YT  P+         ++
Sbjct: 681 QGQRVYVVPETGARLTYKHSLNVLAEYVGTLPVNVEGLSFGPEYTVIPVIG------GFQ 734

Query: 620 CELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL 666
            E+ LP ++P ++  G   R+K ++K       C  L + G L+ +L
Sbjct: 735 GEVLLPESSPLRSATGSIQRSKAVAKCSAAYAMCISLIEAGYLDAYL 781



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 131/341 (38%), Gaps = 73/341 (21%)

Query: 993  KSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHS 1052
            ++   T  PQ    +  E L    +P+ VV   Y  P+++ RLE+ ++A        C+ 
Sbjct: 1051 QNDAETAVPQRTCFLVLETLQISRLPVEVVSMAYNFPAIIYRLENNLIALNC-----CNL 1105

Query: 1053 RNFHIPSSLILEALT--------------TLGCCESFSMERLELLGDSVLKYAVSCHLFL 1098
                I   L LEA+T                      + ERLE LGD  LK A +  LF 
Sbjct: 1106 LGLSIRPDLALEAVTKDSDNSDEPDEAPVNFQGGMGKNYERLEFLGDCFLKMATTIALF- 1164

Query: 1099 TYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCE 1158
            T     E +    R   +CN  L  +  D  LQ YIR  +F+ R W  P  L+L      
Sbjct: 1165 TLMAGDEFEYHVERMTDICNKNLLNVALDMGLQKYIRSKSFNRRTWY-PSGLTL------ 1217

Query: 1159 CGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAAL 1218
                     L GK    D               +G K+IAD  EALIGA Y+ G    + 
Sbjct: 1218 ---------LKGKRLEADAT-----------HSLGDKSIADVCEALIGAAYLTGRERNSF 1257

Query: 1219 YMMKWLGIDADLEVSLVDDCITRASLRSY--------------VP----RINEIKDIESK 1260
             M       A   V+L+    T  +++S+              VP    ++   + I+ K
Sbjct: 1258 DM-------AVKAVTLLTRSQTH-TMKSFAEYRAAYVKPEWQTVPASRLQLELARRIKEK 1309

Query: 1261 IGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLL 1301
            +GYEF    LL+ A  H S    Y     Y+ L+     LL
Sbjct: 1310 MGYEFKDARLLRSAFMHPSYPRVYENIPSYQRLEFLGDALL 1350


>gi|47210542|emb|CAF93934.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1479

 Score =  240 bits (613), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 220/786 (27%), Positives = 348/786 (44%), Gaps = 154/786 (19%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L +G+GKT IAV+L K+++  I+   +G  K  +FL  
Sbjct: 33  YTPRKYQVELLEAALEHNTIVCLNSGSGKTFIAVLLTKELSHQIRGPYSGTAKRTVFLVN 92

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN---------------- 145
           T   V +Q   +R H+D +V EY  ++    W  Q W +EI +N                
Sbjct: 93  TAASVVEQAAAVRTHSDLQVGEYSDSERTTTWTDQHWSREIAENQHSDGSSFSDRVSLRL 152

Query: 146 ---DVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPK 202
               VLVMT  I L  L +  L L  +  +V D+CH A  +HPY +IMK ++    + P+
Sbjct: 153 SVKQVLVMTCHIFLYILTRKILRLSKINLVVFDDCHLAIADHPYCEIMK-YFEGIASSPR 211

Query: 203 VFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE---SCRF 259
           + G+TAS  +  G     D E +I  LE TL S   T  D   ++ +    +E    C  
Sbjct: 212 ILGLTAS--ILNGKCDPSDLEEKIQNLERTLKSNAETATDLVVLDRYASQPREVVLDCGP 269

Query: 260 Y-DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL 318
           Y D+S  C S L+ +L       D +L  L    ++  ++  +     ++ L D     L
Sbjct: 270 YLDRSGLC-SRLQAEL-------DEALRFLNDCNISVAREDHNPTFISKQVLGD----CL 317

Query: 319 YCLDELGLICAYEAVKIC---LEKVLKAQEE--------------------C-EIYRQSS 354
             L  LG  CA +A  I    L+K +K ++E                    C E +  +S
Sbjct: 318 AVLQVLGPWCADKAAGIMVRELQKYIKHEQEELSRKFLLFTDTILRKVHALCEEHFSPTS 377

Query: 355 LQCKYFLEEVLH---VIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGK 411
           L  K+   +VL    ++    P   + F    +  ++  D  Y+S    E          
Sbjct: 378 LDLKFVTPKVLRLLEILREYKPFERQQFESVEWYNNRNQD-NYVSWSDSEDEDEDEDAEA 436

Query: 412 S-----------TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSV 455
                       T +LC IIFVER   A V+ R +K+     P L +++  ++TG +   
Sbjct: 437 KERPEANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGEQDPELAYISSNFITGHSIGK 496

Query: 456 DALTPKVQK-------------------------------------------EVLESFRG 472
             L  K  +                                           +VL  FR 
Sbjct: 497 YQLRNKQMEVEFRKQEEVRRRSADQGRPGPPLTPVPPTSPTWSGRVVESCFPQVLRKFRA 556

Query: 473 GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK 532
            + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S +I++ +     
Sbjct: 557 HETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIMLAD----S 612

Query: 533 QRNKLFD-----------IIRSERSVTDTALSRDPEACFLKACTYVKTKSYIV--ESTGA 579
           +R K F+           I+R++ S +      + E  F   C       Y++  E  G 
Sbjct: 613 ERTKAFEDDLTTYKAIEKILRNKCSKSVEVSEFEVEQVFDDDCI---IPPYVLRSEDGGP 669

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQTIV-GPT 637
            VT ++++  I+RYC  LPSD +    P  K    +   ++  L LP N+P +  V GP 
Sbjct: 670 RVTINTAIGHINRYCARLPSDPFTHLAPKCKTVELQNGHFQSRLYLPINSPLRVPVKGPI 729

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L+++ V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 730 MNCVRLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 789

Query: 693 KRKELH 698
           KR++ +
Sbjct: 790 KRRQCY 795



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 1351 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1410

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            L++LG  + L   +  S FDP   W+ PG
Sbjct: 1411 LYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1439



 Score = 44.7 bits (104), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 1028 TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1087

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 1088 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1146


>gi|392895692|ref|NP_498761.2| Protein DCR-1 [Caenorhabditis elegans]
 gi|408360292|sp|P34529.3|DCR1_CAEEL RecName: Full=Endoribonuclease dcr-1
 gi|379657006|emb|CCD71200.2| Protein DCR-1 [Caenorhabditis elegans]
          Length = 1910

 Score =  240 bits (613), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 211/730 (28%), Positives = 353/730 (48%), Gaps = 91/730 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           F PR YQ+++ + A ++NTI  L TG+GKT IAV+L+K+    + +  +   K   F+  
Sbjct: 11  FNPRDYQVELLDKATKKNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQGGKRAFFVVE 70

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS--QCWQKEINKNDVLVMTPQILLDAL 159
            V+LV QQ   I VHT F+V + +G      WDS  QC Q  + ++ V+V+T Q LLD +
Sbjct: 71  KVNLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQF-MKRHHVVVITAQCLLDLI 129

Query: 160 RKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEFYHKSDNKP--KVFGMTASPVVRKGV 216
           R A+L ++ +C ++ DECHHA G+ HPY  IM ++     +KP  +V G+TAS +++  V
Sbjct: 130 RHAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDYKLLKKDKPVPRVLGLTAS-LIKAKV 188

Query: 217 SSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKES---CRFYDQSKFCGSDLKGK 273
           +     E Q+ +LES +DS + T  D   +  +     E    C+ ++       +    
Sbjct: 189 APEKLME-QLKKLESAMDSVIETASDLVSLSKYGAKPYEVVIICKDFEIGCLGIPNFDTV 247

Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMD-DKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
           +E+    FD +++    +    + D+D D  + ++  L    A       +LG   A+  
Sbjct: 248 IEI----FDETVA-FVNTTTEFHPDLDLDPRRPIKDSLKTTRA----VFRQLGPWAAWRT 298

Query: 333 VKIC---LEKVLKAQ-------EECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
            ++    L K++K+Q           + + S +  K  LE  +  I S   L        
Sbjct: 299 AQVWEKELGKIIKSQVLPDKTLRFLNMAKTSMITIKRLLEPEMKKIKSIEALR------- 351

Query: 383 GFDYSKAVDLGYISTKLHELLQLFLSFG-----------KSTQVLCIIFV-ERIIAAKVV 430
                      Y+  ++  L ++  +F            K+  +  IIFV +R IA  ++
Sbjct: 352 ----------PYVPQRVIRLFEILETFNPEFQKERMKLEKAEHLSAIIFVDQRYIAYSLL 401

Query: 431 --ERFVKKV-PFLTHLTVAYLTGST-----TSVDALTPKVQKEVLESFRGGKVNLLFATD 482
              R +K   P    +   Y+ G++     +S      K Q EVL  F   ++N L AT 
Sbjct: 402 LMMRHIKSWEPKFKFVNPDYVVGASGRNLASSDSQGLHKRQTEVLRRFHRNEINCLIATS 461

Query: 483 VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER-------GNLKQRN 535
           V+EEG+ V  C+ VI+FD P  + SY+QS+GRAR+  S++++ +E         +LK   
Sbjct: 462 VLEEGVDVKQCNLVIKFDRPLDMRSYVQSKGRARRAGSRYVITVEEKDTAACDSDLKDFQ 521

Query: 536 KLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCE 595
           ++  I+ S     +  +  D +  F +     + + Y+VE TGA++   +++ LI+RYC 
Sbjct: 522 QIEKILLSRHRTVNNPIEDDSDR-FEEFDVDSQMEPYVVEKTGATLKMSTAIALINRYCS 580

Query: 596 MLPSDKYYTPKPIFKYKSAEE----AYECELTLPSNAPFQ--TIVGPTSRNKNLSKQLVC 649
            LPSD +    P  +    EE     Y  EL LP N+P +   ++     NK  ++  V 
Sbjct: 581 KLPSDIFTRLVPHNQIIPIEENGVTKYCAELLLPINSPIKHAIVLKNPMPNKKTAQMAVA 640

Query: 650 LEACEKLHQVGALNDHLLPSVEEPSE---NNLISKKNESLPG----AGTTKRKELHGTTP 702
           LEAC +LH  G L+D+LLP   E       ++  + +E  PG     G++KRK+L+    
Sbjct: 641 LEACRQLHLEGELDDNLLPKGRESIAKLLEHIDEEPDEYAPGIAAKVGSSKRKQLYDKKI 700

Query: 703 IRALSGRWGE 712
            RAL+  + E
Sbjct: 701 ARALNESFVE 710



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 118/288 (40%), Gaps = 61/288 (21%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            L+L ALTT    +  S+ER E +GDS LK+A + +L+ T   +HEG+LS  RS  V N  
Sbjct: 1396 LLLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCN 1455

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAP----------------------------GQ-L 1150
            L++LG    +   I  + FD    W+ P                            GQ +
Sbjct: 1456 LYRLGKKLGIPQLIVANKFDAHDSWLPPCYIPTCDFKAPNTDDAEEKDNEIERILDGQVI 1515

Query: 1151 SLRP-------------VPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTI 1197
              +P                  G++T+  P   +    D   +        H  +  K+I
Sbjct: 1516 EEKPENKTGWDIGGDVSKSTTDGIETITFPKQARVGNDDISPLPYNLLTQQH--ISDKSI 1573

Query: 1198 ADCAEALIGAYYVGGGLIAALYMMKWLGI-------DADLEVSLVDDCITRASLRSYVPR 1250
            AD  EALIG + +  G    L +M W+G+        +D+   L+    T  +  + +  
Sbjct: 1574 ADAVEALIGVHLLTLGPNPTLKVMNWMGLKVIQKDQKSDVPSPLLRFIDTPTNPNASLNF 1633

Query: 1251 IN------EIKDIESKIGYEFTVKFLLQEAITHASV---QEFYCYQNL 1289
            +N      +   +E KIGY F  +  L +A THAS    +   CYQ L
Sbjct: 1634 LNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRL 1681



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 11/132 (8%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV-----TPDKLELPPLRELI 1378
            ++ PKA+GD+ ES+ GA+ +D+  NLD  W++   ++   +      P +    P+REL+
Sbjct: 1783 IEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRGTIELCCANPPR---SPIRELM 1839

Query: 1379 ELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438
            E   S   F K    L+   V   + + + ++   G G  R+ + AK  AA + LK L  
Sbjct: 1840 EFEQSKVRFSKMERILESGKVRVTVEV-VNNMRFTGMG--RNYRIAKATAAKRALKYLHQ 1896

Query: 1439 CEKRISKGASNT 1450
             E++  +  S T
Sbjct: 1897 IEQQRRQSPSLT 1908


>gi|346318518|gb|EGX88121.1| RNase3 domain protein [Cordyceps militaris CM01]
          Length = 1455

 Score =  240 bits (612), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 206/842 (24%), Positives = 386/842 (45%), Gaps = 117/842 (13%)

Query: 22  DMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK 81
           D+ ++     +   ++  +++   PR YQ ++FE AK++NTI VL+TG+GKT+IA+ML++
Sbjct: 39  DLSATAPSEGISETAAEISALMITPREYQNELFERAKKKNTIVVLDTGSGKTLIAIMLLR 98

Query: 82  DIAQA---IKSNG-FKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137
            + +     +SNG  +K   F+   V L  QQY V++ +  F + + YG     E     
Sbjct: 99  HVLEQELEDRSNGCHRKTAFFIVDKVALCVQQYQVVKSNLPFPITKCYGDLQPIEQVQSH 158

Query: 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197
           W +  +KN ++V T Q+LLD L   F+++  +  ++ DE HHA   HPY  IMK +Y ++
Sbjct: 159 WDELFDKNMIVVCTAQMLLDCLSHGFINMKQINLLIFDEVHHAKKEHPYAAIMKRYYPRN 218

Query: 198 DN-KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKES 256
           D+ KP++ G+TASP+     +  +D +  + +LES L S++ T+ D+             
Sbjct: 219 DDAKPRILGLTASPI----DTGTLDMDASVQQLESLLCSEIATVSDEV------------ 262

Query: 257 CRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCY---KDMDDKHKTLRKQLSDY 313
                            LE  W K      + Q  ++  Y   + + + +  L   ++DY
Sbjct: 263 -----------------LEAGWVK------REQQEKVCFYQPPQPIQNAYTELTAMVADY 299

Query: 314 HAKI------LYCLDELGLI----CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEE 363
              I      ++C  ++G +    CA+   ++ +          +  R + +   YF  +
Sbjct: 300 ARHIPQLSSAVHCAAKMGSVLGPWCAHRFWQLLMTDNTMRTMTLQSARSNRV---YFSYD 356

Query: 364 VLHVIGSAL----PLADKIFLDFGFDYSKAVDLGYISTKLHELLQ-LFLSFGKSTQVLCI 418
               + +A     PL +   L      +   D G  S+KL  L + L ++F K+    C+
Sbjct: 357 RYDAVSAAFESLGPLVNHHQLT-----TLPTDEGATSSKLTVLRETLCVAFEKNRATKCL 411

Query: 419 IFV-ERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVLESFRGGKV 475
           +FV E+ +A  + + F +     + +   ++ G    ++   ++ + Q   L +F+ G  
Sbjct: 412 VFVDEQYVALVLADYFQQPGTAPSGMVADFMIGLSRASAFSNVSQRQQIMKLNNFKFGDT 471

Query: 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRN 535
           N LFAT V EEG+ +P C  VIRFD+  +   YIQSRGRAR+ +S FI M+E+ N +  +
Sbjct: 472 NCLFATSVAEEGLDIPACDLVIRFDMCVSAIQYIQSRGRARKASSVFITMMEQDNNQHMS 531

Query: 536 KLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCE 595
           +  ++     S+     S   +    K     + + ++ E++  +++  +S+ ++ R+  
Sbjct: 532 RFQNVNIDALSLRRFCQSLPADRKIEKYERPPERELFVAETS--TLSNQNSMVVLARFVS 589

Query: 596 MLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEK 655
            L      +P P +        + C + LP +APF++  G   R+K  ++     EAC +
Sbjct: 590 TLGQGTEKSPAPEYVVSGVGTNFTCWVILPDSAPFKSTSGSMERSKIKARCAAAYEACTR 649

Query: 656 LHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCG 715
           L  +G++N +L P+  +     L   +N  L                  AL  +  ++  
Sbjct: 650 LIDLGSINKNLQPTFRK----KLPKMRNARL------------------ALRDKKQKQYD 687

Query: 716 VILHAYKF-NFACSIVTEIYSGFV------------LLIESELDNDVGNFELELYLVSKT 762
           +++    + +    I T+++  F+             L+  E   D+    L    +  T
Sbjct: 688 MVIKPKVWTSLPAEIPTQLFQTFIQVHPDSAGITTMTLLTREKLPDIEPIRL-FVTIDLT 746

Query: 763 VKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSRE--FFLKRETNSLW 820
           + AT+   G V + A+Q+ +   F       LFG++F K   + + E  F+L   + SL 
Sbjct: 747 MSATLVPGGVVEVSAEQVQQLAAFTLC----LFGQVFSKQFDARAEEIPFYLAPASVSLH 802

Query: 821 SP 822
            P
Sbjct: 803 GP 804



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 119/306 (38%), Gaps = 73/306 (23%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCE--- 1073
            +P  V ++  LLPS++  ++  ++  +  + +       +IP  L+L+A T  G      
Sbjct: 944  IPADVARAALLLPSILYFVDCTLVVGEALQMLG-----LNIPLPLLLQAFTKNGVDADDE 998

Query: 1074 -----------SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
                         + ERLE LGD+ LK   +  ++       E +    R   +CN  L 
Sbjct: 999  EDVKADEEHGGQRNYERLEFLGDTFLKMGTTIAMYTHKTNATEFEHHVDRMLMLCNKNLL 1058

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
            K   D  L  YIR  +F+ R W      SLR                         +V G
Sbjct: 1059 KTALDLGLHTYIRSESFNRRTWYP----SLR-------------------------LVHG 1089

Query: 1183 KPCDMGH-RWMGSKTIADCAEALIGAYYVG----GGLIAALYMMKWLGIDADLEVSLVDD 1237
            KP      + +G KTIAD  EA+IGA Y+     G +  A+  +  +  D +  +    D
Sbjct: 1090 KPTKASAIQNLGDKTIADVCEAIIGAAYMSGVPDGNMDEAVKAVTKMVADPNHTMQCFAD 1149

Query: 1238 CIT------------RASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS--VQEF 1283
                            AS+R+ V R+  +      IGY F    LL+ A TH S   +E 
Sbjct: 1150 YYAGFSVPAWHASSGSASVRAAVDRVAGL------IGYRFRSPLLLRSAFTHPSYKAEEI 1203

Query: 1284 YCYQNL 1289
              YQ L
Sbjct: 1204 PDYQTL 1209


>gi|389749088|gb|EIM90265.1| hypothetical protein STEHIDRAFT_93138 [Stereum hirsutum FP-91666
           SS1]
          Length = 1500

 Score =  239 bits (610), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 214/718 (29%), Positives = 345/718 (48%), Gaps = 86/718 (11%)

Query: 35  PSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDI-AQAIKSNGFK 93
           P   T S +  PR YQ ++F  A+  N IAVL TG+GKT I+++LIK I +Q+  S G  
Sbjct: 3   PDCITTSGDITPRQYQEEIFIRARHSNVIAVLGTGSGKTYISILLIKSITSQSHLSAG-- 60

Query: 94  KLIIFLAPTVHLVHQQYDVIRVH-TDFEVEEYYGAKGV--DEWDSQCWQKEINKNDVLVM 150
           K+++FL P V LV QQ   I        V + +G   +  D  +   W+K  +  D++VM
Sbjct: 61  KIVVFLVPKVPLVEQQSVFIEKQLPSLRVRKVHGGDALAGDMLNRAEWKKFFDSADIVVM 120

Query: 151 TPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--KSDNKPKVFGMTA 208
           T Q+ ++AL  +  S+D V  ++ DECHH   NHPY  IM++ Y       +PK+FGMTA
Sbjct: 121 TAQVFVNALTHSHWSIDKVSLLIFDECHHTRLNHPYNVIMRDSYKHCSPSQRPKIFGMTA 180

Query: 209 SPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCR-FYDQSKFC 266
           S V R   +     +  + ELE+ L ++  T++    E+    P  KE C   YD+ +  
Sbjct: 181 SVVWRPSRA-----QEDLQELEANLVAKAITVQMHHEELGHHSPKPKEVCAPIYDRLEI- 234

Query: 267 GSDLKG------------KLEVSWSKFDA----SLSKL--QGSQLNCYKDMDDKHKTLRK 308
             D+K                + W+  DA    +L  L    ++   YKD+ D+   LR+
Sbjct: 235 --DIKAAGSYALPVAPLDDPAIPWAIVDARYTTALRNLGPYAAETFLYKDLSDR---LRQ 289

Query: 309 QLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY--FLEEVLH 366
            +    A  +  L     + A        E++L+  E  +IY    L  +Y    E    
Sbjct: 290 FIQPSQADEMSRLR--SQLQAMHTESSTPEQLLRDPEMRQIY---DLITEYSPLFEMPGP 344

Query: 367 VIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS-FGKSTQVLCIIFVERII 425
           V GS++P ++       F      DL + S K+H L+++  + F  ++Q   I+FVE+  
Sbjct: 345 VHGSSIPSSEN-----QFPPGWVFDLSWCSPKVHVLVEVLRNQFTPASQ--GIVFVEQRH 397

Query: 426 AAKVVERFVKKVPFLTHLT--VAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDV 483
            A  + R + KV  L  +     ++  ++ + + +    Q  VLESFR   +NLL AT V
Sbjct: 398 VASGLARLLSKVDELKGVVRCAEFVGHASDTGEGMKAGEQNRVLESFRKRSINLLIATQV 457

Query: 484 IEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK--QRNKLFDII 541
            EEG+  P C  V+RFD  + +  ++QSRGRAR  +S F++M+E+G+    +R K F  I
Sbjct: 458 AEEGLDFPACDVVVRFDSIQHLVGFVQSRGRARHKDSTFVIMVEQGDETAIERYKRFAEI 517

Query: 542 RSERSV--------TDTALS--------RDPEACFLKACTYVKTKSYIVESTGASVTTDS 585
            S  SV        T T L+         D E          + + ++V  T A ++ ++
Sbjct: 518 DSLSSVSSASAASETPTNLTSMRGMGSDEDDEP---NEVDLAQRERFVVSDTKAVLSYNN 574

Query: 586 SVNLIHRYCEMLPSDKY-YTPKPIFKYKSAEEAYE-CELTLPSNAPFQ----TIVGPTSR 639
           +++L+ R C ++P+D +  T KP +    A+  Y  C LTLPS  P         GP   
Sbjct: 575 AIDLLSRLCALIPTDNFTRTYKPTYITNIAQTGYYVCSLTLPSALPLPHGHLKYTGPGKC 634

Query: 640 NKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKEL 697
           +K  +K+ V   A + L+ +   +++LLP+    S  ++     ES  GA     K++
Sbjct: 635 SKREAKRAVAFLAVKALYGLNVFDEYLLPAR---SVKDMEQDAEESTGGAAYIDVKQI 689



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 179/452 (39%), Gaps = 103/452 (22%)

Query: 1004 HVHMPPELLVRVDV--------PIS------VVKSLY----LLPSVMQRLESLMLASQLR 1045
            H+H  P+  V +DV        P+S      +  SLY    LLP ++ R+  +  A   +
Sbjct: 907  HLHSRPDDAVPMDVDDIDTNIFPLSSCRWTAISTSLYRTFGLLPRLLHRINDVFRAQSAQ 966

Query: 1046 EEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHE 1105
              +     N    + L++EA T       ++ +R E LGDSVLK   S H+F  YP +HE
Sbjct: 967  LALGLPPIN----TDLLIEAYTIPAARTGWNNQRFETLGDSVLKLCTSVHVFNKYPWRHE 1022

Query: 1106 GQLSARRSWAVCNSTLHKLGTDRKLQGYIR-DSAFDPRRW-------VAPGQLSLRPVPC 1157
            GQLS  R  A+ N TL +      L+ ++  +S  +   W        AP        PC
Sbjct: 1023 GQLSVLRQVAISNMTLLRKAKAVSLESFLNTESTSNETTWRYCLPSGPAPHH------PC 1076

Query: 1158 ECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAA 1217
                DT  VPL          V         HR    +++ DC EA +GA Y  GG+  A
Sbjct: 1077 HPVKDTDRVPLPPPSSRPRRLV---------HRRFPRRSLQDCMEATLGAAYATGGIPMA 1127

Query: 1218 LYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITH 1277
            L     LG++    +  +     +    +  P +     ++ ++GY F    LL EA+TH
Sbjct: 1128 LQAGTALGLNFGGSIPWLTRFGKQCESSAERPGV-LFNVLQERLGYTFRNPELLVEAMTH 1186

Query: 1278 ASVQ---------EF------------YCYQNL-------------------------YK 1291
             S           EF            Y Y                             K
Sbjct: 1187 PSFATGGQSYQRLEFLGDAVIDLTVMSYLYNKFPSATSGKLSTARARAVSAPVLSSIAVK 1246

Query: 1292 HLQHCSTLLLSQITEYV---KSFPKPGETTDSGPSMKA-----PKALGDLLESIVGAVLI 1343
            HL     +L+++    +   K  P   ET+     + A     PKA+ D+LES++GAV +
Sbjct: 1247 HLGLHKLMLVNETNLSIAMGKYLPTLEETSYEDMVLNAWAHDPPKAISDVLESLLGAVFV 1306

Query: 1344 DTKLNLDEVWRIFKPILSPI---VTPDKLELP 1372
            D+  N D    + + +++ +   ++PD  + P
Sbjct: 1307 DSGWNWDLAQAVTEGVMNDVLELLSPDTPKDP 1338


>gi|83772763|dbj|BAE62891.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|391869364|gb|EIT78563.1| dsRNA-specific nuclease Dicer [Aspergillus oryzae 3.042]
          Length = 1374

 Score =  239 bits (609), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 216/808 (26%), Positives = 364/808 (45%), Gaps = 102/808 (12%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETG--------------------AGKTMIAVMLIKDIAQ 85
           PR YQ+++FE AK +NTIAVL+TG                    +GKT+IAV+L+K I Q
Sbjct: 4   PREYQVELFERAKSQNTIAVLDTGTCIQAQLDVIPFFSPNCTTGSGKTLIAVLLLKHIIQ 63

Query: 86  ---AIKSNGFK-KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKE 141
                ++NG   ++  FL  +V L  QQ  V+R + D  V +++GA G D W  Q W  +
Sbjct: 64  NELIDRANGKPPRISFFLVDSVTLAFQQAAVLRNNLDQNVAQFFGAMGTDLWSKQTWDHQ 123

Query: 142 INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--N 199
              N V+V T +IL   L  +++ +D +  ++ DE HH   +HPY +I++E Y K+D   
Sbjct: 124 FENNMVIVCTAEILNQCLLNSYIRMDQINLLIFDEAHHTKKDHPYARIIRESYLKADPTK 183

Query: 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF 259
           +P++FGMTASP+  KG     D     ++LE  LDS++ T      +   V    E    
Sbjct: 184 RPRIFGMTASPIDTKG-----DIIESATKLEVLLDSKIATTSKPNLLREVVRRPIEESWE 238

Query: 260 YDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILY 319
           YD           KL+  ++      +KL       + D+       R  L         
Sbjct: 239 YD-----------KLDPPFA------TKLYQILQARFGDISSLQPVFRFTLQ-------- 273

Query: 320 CLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL------QCKYFLEEVLHVIGSALP 373
              ELG  CA  A    L   +  + E  + + +        QC   L+E+     S + 
Sbjct: 274 ASSELGPCCADRAWAYALADDVLPKLEGNVRKLAQSISSPIPQCA--LKEI-----SRIQ 326

Query: 374 LADKIFLDFGFDYSKAVDLGYISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVER 432
            A  I  +  F+       G +S K+  L Q L   F   T+  CI+F ++   AK++  
Sbjct: 327 EASDIVKNHSFNSPNVP--GELSPKVQLLRQKLIKYFEHPTKTKCIVFTQKRYTAKMLFD 384

Query: 433 FVK--KVPFLTH-LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMH 489
                ++P+L   + +   +G    ++ ++ + Q   L  FR G++N LFAT V EEG+ 
Sbjct: 385 LFSTLEIPYLRPGVLIGVRSGDIVGMN-VSFRQQFLALVKFRSGEINCLFATSVAEEGLD 443

Query: 490 VPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD 549
           +P+C+ V+RFDL  T+  Y+QSRGRAR  +S +  M+ER N     +L ++  +E+ +  
Sbjct: 444 IPDCNLVVRFDLYNTLIQYVQSRGRARHSSSTYASMIERYNADHAARLVEVREAEK-LMQ 502

Query: 550 TALSRDPEACFLKACTY---------VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSD 600
           +     PE   L               + +++I+ +TGA +T  S++ ++ RY   L   
Sbjct: 503 SFCETLPEDRILHGIDSEIDSILQGEEEKRTFIIRATGAKLTYHSALAILARYASSLVRT 562

Query: 601 KYY----TPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKL 656
             Y    + +  +       ++ CE+ LP  +P + + G  +  K+ +KQ    + C  L
Sbjct: 563 VQYEKETSAQATYVVLPQNNSFVCEVILPEKSPVRGLTGVPASKKSAAKQSAAFDTCVLL 622

Query: 657 HQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGV 716
            +   L+DH            L + +N  L  A T+ R   +      +L   WG++ G 
Sbjct: 623 RKHKLLDDHF----NSVYHRRLPAMRNARL--AITSSRTNQYDMLSKPSL---WGKQQGT 673

Query: 717 I---LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQV 773
           +   L A   +F  S         ++L+  E   D  +F + L    +T+  T S    +
Sbjct: 674 LPEKLFATVISFIPSEPLRRRHRSIILLTRERLPDFPSFTIFLDDDIETIVVTESVEEAL 733

Query: 774 HLDADQMSKAKCFQELFFNGLFGKLFVK 801
           H+ + ++     F    F+ +F K + +
Sbjct: 734 HISSQELEYLSTFTFRIFHDVFHKTYAE 761



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 115/310 (37%), Gaps = 74/310 (23%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P  +  S    P+++ RL++ ++A +      C + +  +     LEA T         
Sbjct: 920  IPEEIAASCLAFPAIINRLDAYLIALE-----GCKTLDLSVKPEYALEAFTKDSDNTEEH 974

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G  +++  ERLE LGD  LK A S  LF+  P   E      R   +CN  
Sbjct: 975  RVQQIHVQRGMGKNY--ERLEFLGDCFLKMATSISLFVQNPDDDEFDFHVNRMCLICNKN 1032

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L      ++L  Y R   F    W  P  L+L               L G+    D +  
Sbjct: 1033 LFNTALKKELYQYTRSRGFSRHTWY-PDGLTL---------------LHGR----DHRKK 1072

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCIT 1240
            +        R    KT+AD  EALIGA  + GGL     M       A   V+ V D   
Sbjct: 1073 ISAESKHALR---EKTVADVCEALIGASLLSGGLHNQFDM-------AVKAVTAVVDSPN 1122

Query: 1241 RASL------RSYV--------PRINEI---KDIESKIGYEFTVKFLLQEAITHASVQEF 1283
              +L       SY+        P   E+   + +E K+GY F    LL  A TH S    
Sbjct: 1123 HKALCWADYTSSYMLPKYQTQSPDGYELDLGRKVEEKLGYRFKYPRLLHSAFTHPSYPST 1182

Query: 1284 Y----CYQNL 1289
            +    CYQ L
Sbjct: 1183 WAKVPCYQRL 1192


>gi|388565188|gb|AFK73581.1| dicer-2 [Nilaparvata lugens]
          Length = 1656

 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 209/686 (30%), Positives = 331/686 (48%), Gaps = 101/686 (14%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFL 99
           F+ R YQ ++  +A + N I  L TG+GKT +A M+IK    DI + +   G  K   FL
Sbjct: 26  FVARDYQDELLPLAVQNNCIIYLPTGSGKTFLATMIIKHFGADIEKKLSEGG--KRAFFL 83

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
             TV LV QQ   I+  T F V EY G  G D W  Q W++E++   V+VMT QILL+ L
Sbjct: 84  VNTVQLVEQQAQSIKRQTTFTVGEYTGQTGCDLWSEQIWKRELDNKSVIVMTSQILLNLL 143

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSS 218
             ++L L  +  IV DECH+A  +HP   IMK F +  +  +P V G+T S      ++S
Sbjct: 144 SHSYLKLSNIRIIVFDECHNAVKDHPMRCIMKFFENVPASQQPHVVGLTGS-----LLNS 198

Query: 219 AMDCEGQ----ISELESTLDSQVFT--------------IEDKTEMEVFVPSAKESCRFY 260
            +D EG+    I ELE+T  S++ T               + + EM  F P         
Sbjct: 199 TID-EGKVNEYIRELEATFLSRIITSVNENMALAIARYSTDPQQEMVAFSP--------- 248

Query: 261 DQSKFCGSDLKGKLEVSWS-KFDASLSKLQGSQLNCYKD------------MDDKHKTLR 307
                 G+ ++ +L  S +   D+++  +    L   +D            M++ +K L 
Sbjct: 249 ------GTHMRSELCTSINIVLDSAIRNVTLFNLKMEEDFVPLKPSIHAIAMEENNK-LN 301

Query: 308 KQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHV 367
           K+L++    I Y ++ LG   AY+A  + +  +L+ ++     R+ +   +Y        
Sbjct: 302 KKLANMIVDIKYQMENLGAYGAYKAA-LAMMILLERKKRSAQLRKHAAAFQY-------- 352

Query: 368 IGSALPLADKIFLDFGFDYS-KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIA 426
           + + L L  KI  D    Y  +   + ++S K+ +LL+LF  F ++ + L  IFV R  +
Sbjct: 353 LCTMLTLVRKISFDVLSKYEGEERIIRFVSNKVLKLLELFKGFKETDKAL--IFVTRRFS 410

Query: 427 AKVVERFVK--KVPFL-THLTVAYLTG--STTSVDALTPKVQKEVLESFRGGKVNLLFAT 481
            K ++  ++  K+P + +   V Y T   + T    L  KV K+VL+ F GG  N+L A+
Sbjct: 411 CKCLQYILEDLKLPNVKSDFIVGYNTNPFNDTREGLLEKKVNKKVLKRFNGGDTNVLIAS 470

Query: 482 DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDII 541
           DV+EEG+ V  C+ VI+FD P T+ SYIQS+GRAR   S+F +M E  + K   K+    
Sbjct: 471 DVLEEGIDVQTCNTVIKFDPPTTMRSYIQSKGRARTRQSKFYIMTEAKDYKVEGKINKFE 530

Query: 542 RSERSVTDTALSRDPEACFLK---------ACTYVKTK---SYIVESTGASVTTDSSVNL 589
           R E     T L  +    FL+         A +  KT     Y +   G  +   + + L
Sbjct: 531 RLE-----TKLKHELVGKFLERSLPSEKELANSIFKTTIKPFYPLGPDGPKIEGSTPIAL 585

Query: 590 IHRYCEMLPSDKYYTPKPIF------KYKSAEEAYECELTLPSNAPFQTIVGPTS-RNKN 642
           I+RYC  L  D++ T  P +      K    E      L LP ++P + ++   +  N  
Sbjct: 586 INRYCMSLDCDRFSTLTPFWWKEVSKKNGFNENNIVVYLQLPISSPVRDVIKSDAFPNVE 645

Query: 643 LSKQLVCLEACEKLHQVGALNDHLLP 668
           L+K+   L+AC+ L+    L+D +LP
Sbjct: 646 LAKRSAALKACKLLYDSRELDDKMLP 671



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 131/302 (43%), Gaps = 53/302 (17%)

Query: 1063 LEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
            L+ LT     + F++ERLE LGDS LKYAVS  LF+ +P+  EGQL+  +   + N  L 
Sbjct: 1179 LQVLTAASAHDIFNLERLETLGDSFLKYAVSLLLFIRFPELSEGQLTMIKGKVIGNRNLF 1238

Query: 1123 KLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPC---ECGVD---TLEVPLD------ 1169
              G  + L   I+   F+    W+APG    R V     E  ++     E+PL       
Sbjct: 1239 YCGEQKGLGSIIKAVEFNTESDWIAPGFCVDRTVQNLFRELNINPRYLYEIPLSRDEIEC 1298

Query: 1170 GKFFTQDTKVVVGKP---------CD------MGHRWMGSKTIADCAEALIGAYYVGGGL 1214
            GK   +   ++  K          C+      +  +   +KT++D  EAL+G Y    GL
Sbjct: 1299 GKLSPRTKDIIEEKLEEWEEDLDYCNYSNAHFISQQVTSNKTVSDSVEALLGLYIQSYGL 1358

Query: 1215 IAALYMMKWLG-IDADLEVSLVDDCITRASLRSYVP--------RINEIKDIESKIGYEF 1265
                 M++WL  ID  L   +  D  T+  +   +          I+    +E  I Y+F
Sbjct: 1359 EKGFDMLRWLKVIDPKL---ITPDVYTKKKVEPTILFKGGQIDFHIHHPDYLEKLINYKF 1415

Query: 1266 TVKFLLQEAITHASVQEFYCYQNL---YKHLQHCSTLLL-----SQITEYVKSFPKPGET 1317
              +  L +A++H + Q      N+   Y+ L+     +L     + + EY  +   PGE 
Sbjct: 1416 KDRTFLLQALSHPTYQP----NNITPTYQRLEFLGDAILDFLVTTHMYEYCDNL-TPGEL 1470

Query: 1318 TD 1319
            TD
Sbjct: 1471 TD 1472



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 89/229 (38%), Gaps = 47/229 (20%)

Query: 826  YLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPC 885
            YLL P+++ N    G   INWS I       E I                 S P      
Sbjct: 850  YLLAPIKLEN----GRSVINWSVIRDNQEFPEII-----------------SPPVEE--- 885

Query: 886  KTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTD 941
                  KD++      V  +  K+ VV+  + G    + Y + ++  N +A S F     
Sbjct: 886  ----RQKDIV------VTEEIYKNSVVIPWYRGFLPRQAYIVTDLSKNETALSDFPSG-- 933

Query: 942  DDSKTFVNYFSEKYGIV--LIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTK 999
             D  T+  YF  KY  V  L    +PLL ++      N L        S + +      +
Sbjct: 934  -DYPTYEKYFVTKYANVEKLYSAQKPLLEVRALSRRLNCL----RPRHSVQATSKRKKKQ 988

Query: 1000 KPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
            + +    + PEL VR  VP +      LLPS + R+ +L+LA +LR  I
Sbjct: 989  EEEFEESLVPELCVRCAVPAAYWLKATLLPSCVHRITALLLADELRVTI 1037


>gi|299754132|ref|XP_002911949.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
 gi|298410618|gb|EFI28455.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
          Length = 1457

 Score =  237 bits (604), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 196/683 (28%), Positives = 317/683 (46%), Gaps = 91/683 (13%)

Query: 45  IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           + R YQ ++F  A++ N IA L TG GKT+I+V+L++ +    K+    K IIFL P V 
Sbjct: 18  VARKYQEEIFRQAQKGNVIAYLRTGLGKTLISVLLMRWMCTQEKAK--DKAIIFLVPKVA 75

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           LV QQ + I   T     + +GA  +   D   W+K    +DV V TPQ+ L+A+  A  
Sbjct: 76  LVEQQANYIHKQTGLRTCKIHGALNLSFADRDGWKKRFADHDVFVTTPQMFLEAITHAVW 135

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDC 222
            ++    I+ DECHHA  NHPY  IM+E++     + +PK+FGMTASP   +   +    
Sbjct: 136 KIEQCSLIIFDECHHARKNHPYNGIMREYFQVQPLNARPKIFGMTASPYWNQKNPAL--- 192

Query: 223 EGQISELESTLDSQVFTIEDKTE---------MEVF--VPSAKESCRFYDQSKF-CGSDL 270
              +S LE+ LD+++  + +  E          EV    P   E+  F + + + C S  
Sbjct: 193 --SLSTLEANLDAKIIGVHEHVEELQSHYSKLNEVIEKYPYPPETYNFPEPTLYQCLSVF 250

Query: 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330
                 S+   D   +KL             +H      +  Y A  LY   E+  I + 
Sbjct: 251 YASDPTSFDAMDIPWTKLAM-----------RHNMTLGNIGPYCAS-LYLFSEMRHILSG 298

Query: 331 EAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF------ 384
              K+   K+L  +E+       ++  K  +          L L D + +  GF      
Sbjct: 299 LHYKVM--KILATEEQ-----NDAMAIKIDVSSAHPTKLPPLALYDLLEIIDGFEPYFVS 351

Query: 385 -----DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
                +    V L + + KL  ++ +  S   +  +  IIFVE+   A  + + ++ +P 
Sbjct: 352 SEETSELPIPVPLDWCTPKLRIMVNIIRSH-LANPIQMIIFVEQRQTAACLAQVLEVIPE 410

Query: 440 LTHLT-VAYLTGSTTSVDAL----TPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
           L  L    YL G  T+ D        K + + ++ FR  ++N+L AT V EEG+  P C 
Sbjct: 411 LKGLAKCGYLMGHGTAGDITRRDEERKSKADPIKLFREKEINILIATSVAEEGLDFPACE 470

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILM--------------LERGNLKQRNKLFDI 540
            VIRFD PK +  Y+QSRGRAR   S++I+M              L+RG L+      + 
Sbjct: 471 LVIRFDPPKHLVGYVQSRGRARSKVSKYIVMIQQEDTDQLERYQALQRGELELSKTYHNR 530

Query: 541 IRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSD 600
              ER  +DT    D     L      + + ++V STGA +T D++++LI+  C ++P D
Sbjct: 531 TMPERDESDTMYDDDTHPMDL-----AERERFVVPSTGAVLTYDNALSLINHLCALIPRD 585

Query: 601 KY---YTPKPIFKYKSAEEAYECELTLPSNAPFQ----TIVGPTSRNKNLSKQLVCLEAC 653
            +   Y P+ I  ++S        + LP++ P Q      +G   R+K  +K+ V  +A 
Sbjct: 586 SFTEAYKPQFIGDFQS-------RMRLPASLPLQPRDLVYLGYPKRSKQEAKRSVAFQAV 638

Query: 654 EKLHQVGALNDHLLP-SVEEPSE 675
           ++L ++   +D+LLP S E P +
Sbjct: 639 KRLLKLNVFDDYLLPVSSERPGD 661



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 127/535 (23%), Positives = 213/535 (39%), Gaps = 105/535 (19%)

Query: 918  GRIYSIVEIVNNSSAES-PFDGNTDDDSKTFVNYFSEKYGI----VLIHPGQPLLRLKQS 972
            GRIY +  I N+ + +S P  G+ +    T+  YF+ K+        +  G PL+     
Sbjct: 820  GRIYQLQCIRNDLALDSRPPQGSLEGGYDTYRRYFATKWARKKREAFLPKGGPLIEA--- 876

Query: 973  HNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRV-DVPISVVKSLYLLPSV 1031
                 +L   + G    +G  + +   K     ++ P    RV   P S+  +  +LP++
Sbjct: 877  ----TVLARVDSGEYDHEGGNTTIKKAKTDGRTYILPRDCCRVLHFPTSLSNTFRVLPAL 932

Query: 1032 MQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYA 1091
             +++  +  A   R  +    R   I   +++E+LT      +FS +RLE LGD+VL+  
Sbjct: 933  CRKITDIYRARVARIAL----RLPFIEDKILIESLTIPAALLAFSNQRLETLGDAVLQLC 988

Query: 1092 VSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLS 1151
             + HLF  YP +HEGQL+  R   V N  L +   +  L+ YI        RW       
Sbjct: 989  TTVHLFNQYPNRHEGQLTTLRRATVSNKFLLQRALEMGLEEYITVEIASVARW------- 1041

Query: 1152 LRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVG 1211
             R +    G D    P       +  + +V +           +++ DC EAL+GA ++ 
Sbjct: 1042 -RYI---LGEDADTAP------PRSVRTLVPR-----------RSLQDCMEALLGASFLQ 1080

Query: 1212 GGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLL 1271
            GG+  AL     LG+  +    L  +        + V   +    ++ ++GY F    +L
Sbjct: 1081 GGIPMALQAGPSLGV--EFGGPLPWEMRYERKGPAEVATTHLFDTLQERLGYTFHSNSIL 1138

Query: 1272 QEAITHASVQ---------EF------------YCYQNLYKHLQHCSTLLLSQ------- 1303
             EA+TH S           EF            Y Y+   +   H  +LL ++       
Sbjct: 1139 VEAVTHPSFATDGPSYQRLEFLGDAILDLVVVHYLYEKFPEANSHQLSLLRAKVICAPTL 1198

Query: 1304 ------------------------ITEYVKSFPK--PGETTDSGPSMKAPKALGDLLESI 1337
                                    I  YV  F      E   S      PKA+ D+ ES+
Sbjct: 1199 AYLAIKELGVHKILLINNMGLYRAIEAYVPVFEDITDEEIARSYYKFDPPKAISDVFESL 1258

Query: 1338 VGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENC 1392
            VGAVL+D+  N D+   +   I+S ++  D+L L   ++ + L   L +  +  C
Sbjct: 1259 VGAVLVDSGYNYDKTSAVVLDIMSKVL--DQLSLDMAKDPVSLL--LEWVAQHGC 1309


>gi|340372191|ref|XP_003384628.1| PREDICTED: endoribonuclease Dicer-like [Amphimedon queenslandica]
          Length = 1530

 Score =  236 bits (603), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 213/702 (30%), Positives = 321/702 (45%), Gaps = 110/702 (15%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA-----QAIKSNGFKKLIIFLAP 101
           R YQ K+ E A + NTI  L TGAGKT +AVMLI+++A     Q  +S G  + IIFLA 
Sbjct: 20  RPYQDKMVEYAIKENTIVSLGTGAGKTFVAVMLIREMAHFAEGQFTESEG--QRIIFLAH 77

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYG-AKG-VDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
           TV LV QQ + IR +T  +V E+ G  KG +D W  + W    N  +VLV +  I LD L
Sbjct: 78  TVPLVKQQAEYIRDNTSLKVFEFVGDPKGNIDSWPKETWYNHFNAANVLVFSRTIFLDLL 137

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-SDNKPKVFGMTASPVVRKGVSS 218
            K F+    +C IV DECHHAT N P+ +IMK       + +P++ G++AS + +K    
Sbjct: 138 MKGFIKPRQLCLIVFDECHHATKNDPFVQIMKVVKDAPPEERPRILGLSASLLGQK--VK 195

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ-----SKFCGSDLKGK 273
             D +  +  LE+TL S   T  D  E+  F  +  E    Y+      +      +   
Sbjct: 196 PGDLKKGVKNLEATLMSTARTAPDMEEVLKFATNPDEKIASYESALDEPASLLKEIIHPP 255

Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTL------------RKQLSDYHAKILY-- 319
           L    +K      KL+ +  N    +DD H  L               + +    I Y  
Sbjct: 256 LVFLQTKIQERKGKLEETAKNL---LDDLHHILIDLGPASAAGFVSVAIFELRKAIEYTD 312

Query: 320 CLDELGLICAYEAVKICLEKVLKAQEECEIYR------QSSLQCKYFLEEVLHVIGSALP 373
            +DE     A+    + LEK+   +  C  ++      Q S + K  L+E+   + +   
Sbjct: 313 TIDEWEKHIAW----LALEKLYIFEASCRQFKTKYGILQDSNKVKTLLDEIRDTVSANGE 368

Query: 374 LADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQ----VLCIIFVER----II 425
           ++D          SK         +  E          S Q    +  IIF ER    + 
Sbjct: 369 MSDS-------PPSKGTKEEAKGEEEKEEEVQKKDQKSSPQAKRALRGIIFAERRHTALC 421

Query: 426 AAKVVERFVKKVPFLTHLTVAYLTGST--TSVDALTPKV------QKEVLESFRGGKVNL 477
            +K+++   K  P L H++  ++ G +   S +A+  +       Q++VL  FR G VNL
Sbjct: 422 LSKLIQEKKKTQPDLKHVSCDFVVGHSLGQSGNAMRKEARMKSSRQEQVLGKFRKGTVNL 481

Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML---ERGNLKQ- 533
           L AT VIEEG+ VP C+ VIRFDLP+   SY+QS+GRAR   S+F+L+L   E+  L + 
Sbjct: 482 LVATSVIEEGVDVPRCNLVIRFDLPQNFRSYVQSKGRARDKPSKFVLLLSDMEKNKLGEI 541

Query: 534 ------RNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVEST-GASVTTDSS 586
                   +L ++ +S+R++      +   A  +          Y+   T GA V+  +S
Sbjct: 542 RCYHQLETELIELCQSDRALPSEEEIQKKMADIIPP--------YMPNGTEGARVSLGNS 593

Query: 587 VNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA----------------------YECELTL 624
           + L+HRYC  LP D+Y    P F+ K   +A                      Y C L L
Sbjct: 594 LTLLHRYCGRLPQDEYTKLSPHFEVKKIPKAGGRTLSLSELSLEEEDEDPNHNYICSLFL 653

Query: 625 PSNAPFQT--IVGPTSRNKNLSKQLVCLEACEKLHQVGALND 664
           P N P ++  I  P    K  S++   L A EKLH++  ++D
Sbjct: 654 PINCPLRSDIIKSPPLGTKQQSQRAAALYAMEKLHKMDEVDD 695



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 177/463 (38%), Gaps = 143/463 (30%)

Query: 924  VEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFN 983
            VE+  + +  SPF+         FV +F  KY   +I   QP L  ++ +   + L  F 
Sbjct: 927  VEMDESKTPLSPFNY---PKFANFVEFFKSKYDYEIIDKDQPALICRRVNT--SFLKLF- 980

Query: 984  DGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQ 1043
                + +   S    KK    + M PEL+    V +S  + L  LP+++ R+ESL++A +
Sbjct: 981  ----TSRYLMSEPAVKK--TDITMFPELVHVFPVSVSFWRVLRCLPAMLWRVESLLIAHK 1034

Query: 1044 LREEINCH------------------------------SRNFH-----------IPSS-- 1060
            L   I                                 SR              +PS   
Sbjct: 1035 LSTRIRMETGIGRENSDTFLLTDTSVRGYADSGHGVLPSRRLQYLNDLTPDITKVPSDEE 1094

Query: 1061 -----------LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLS 1109
                       LIL+ALT  G  +S ++ERLELLGDS LK   S +L+   P  HEG+LS
Sbjct: 1095 IRYSNRGPDNCLILQALTPRGANDSINLERLELLGDSFLKLVTSVYLYNLRPNSHEGKLS 1154

Query: 1110 ARRSWAVCNSTLHKLGTDRKLQGYIR--------DSAFDPRRWVAPGQLSLRPVPCECGV 1161
              RS  V N  L  LG  + +   I         DS  +   WV PG  +L         
Sbjct: 1155 EARSRRVANINLFVLGKKKGITSAILSDDFVSGIDSFKERLTWVPPGYAAL--------- 1205

Query: 1162 DTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMM 1221
                                    +  H+ +  K++AD  EALIGA+ V GGL   + +M
Sbjct: 1206 ------------------------EESHK-VTDKSVADTVEALIGAHTVAGGLEGGITLM 1240

Query: 1222 KWLGIDA-DLEVSLVDDCITRASLRSYV-----------------PRIN----------- 1252
            KW GI   D   ++     T ++ RS +                 P++            
Sbjct: 1241 KWFGIKINDGSSTIAPPKSTSSNTRSLLLAESDSIFSSHFGSPPAPKLAFSDKAISTRNR 1300

Query: 1253 ---EIKDIESKIGYEFTVKFLLQEAITHASVQE---FYCYQNL 1289
               ++  I+ KI Y F  + LL EA+TH+S        CYQ L
Sbjct: 1301 ILPQVSSIQGKIEYSFKNELLLIEAMTHSSYHRNDITGCYQRL 1343



 Score = 48.5 bits (114), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 13/79 (16%)

Query: 1061 LILEALT--------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARR 1112
            L++EA+T          GC      +RLE LGD++L Y V+CH++ +      G+++  R
Sbjct: 1321 LLIEAMTHSSYHRNDITGC-----YQRLEFLGDAILDYLVTCHIYQSDSSAEPGEITELR 1375

Query: 1113 SWAVCNSTLHKLGTDRKLQ 1131
            S  VCNS   KL     L 
Sbjct: 1376 SALVCNSRFAKLAISLNLH 1394



 Score = 43.1 bits (100), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
            ++ PK+L D  E++ GAV ID+ +NL  VW  F P L
Sbjct: 1459 IEPPKSLSDCFEALAGAVFIDSGMNLQTVWEAFSPFL 1495


>gi|148907962|gb|ABR17101.1| unknown [Picea sitchensis]
          Length = 685

 Score =  236 bits (602), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 212/694 (30%), Positives = 303/694 (43%), Gaps = 134/694 (19%)

Query: 1031 VMQRLESLMLASQLREEINCH-SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLK 1089
            +M RLE+L++A +L+E +         + +S +LEA+TT  C E FS+ERLE+LGD+ LK
Sbjct: 1    MMHRLENLLVAIELKELLTASFPEGSLVTASRVLEAITTERCMEGFSLERLEVLGDAFLK 60

Query: 1090 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQ 1149
            YAVS  LFL Y K  EGQL+ +RS A+ NS L+K    +    YIRD  FDP+++ A G 
Sbjct: 61   YAVSRRLFLVYDKLDEGQLTKKRSNAIKNSNLYKRAKGKGFPAYIRDEYFDPKQYFALG- 119

Query: 1150 LSLRPVPCECGVDTLEVP--LDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGA 1207
               RP    C  + + +    +G     DT     K C   H W+  KTIAD  EALIGA
Sbjct: 120  ---RPCKNVCTPELVHMIHYFEGDNTMTDTDFTSVK-CTKRHHWLHMKTIADVVEALIGA 175

Query: 1208 YYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTV 1267
            Y V  G  AAL  +KW+GI+ D + SLV +   R+     + +  +I ++E  +GY F+ 
Sbjct: 176  YLVDSGFGAALAFLKWIGIEIDFDTSLVGEVCIRSRNNLSLIKCIDIDELERLLGYNFSY 235

Query: 1268 KFLLQEAITHASVQEFY--CYQ-------------------------------------- 1287
            K LL EA  H S  E    CYQ                                      
Sbjct: 236  KGLLLEAFAHPSFNEHNGGCYQRLEFLGDAVLDYIITSYLYSVYPDMKPGYLTDMRSMTV 295

Query: 1288 ------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSG----PSMKAPKALG 1331
                         LY +L   S  L S +T+YV  F K   T D      P  K PK LG
Sbjct: 296  NNESFACVAVRHGLYMYLIQKSDSLSSAVTKYV-DFMKALFTADRDSCDEPEPKCPKVLG 354

Query: 1332 DLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCD----SLGYF 1387
            D++ES  GA++IDT  +LD VW++   IL PIVTP+ L L P+REL E+C     +L Y 
Sbjct: 355  DIVESFAGALVIDTGFDLDCVWKLMLNILQPIVTPETLCLQPVRELSEVCQHHNLTLDYV 414

Query: 1388 VKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE---------- 1437
                    G +V A++  +     + G G   S K AK  A+   L KL+          
Sbjct: 415  KASKGNGNGYLVEAKVSGKKVSGSVGGTGTRTSIKDAKKVASKDALLKLKGFGLEHPNKI 474

Query: 1438 ------VCEK--RISKGASNTGKLGDDCRQTTKEDLPE----PPSCKRQ----KGTEAAI 1481
                   C K   +  G +   +   + +   K + P+    P SC R     + T   I
Sbjct: 475  LEVFIRTCRKGSAVLVGKNKAEQATSNIKIAGKLEEPKFNSSPASCSRDLHSVRSTSELI 534

Query: 1482 PAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLC---------------KT-MLWPM 1525
            P   +  +    TV    + P+  +     T+  Q                 KT   WP 
Sbjct: 535  PPCMASLQKNSSTVCEQPLLPLATENDMSSTNQNQEAYKEYTNSDHHYDITNKTEYQWPS 594

Query: 1526 PTFETT-----ESKSRTLLVFC---------------EGLEKRTGFSSFVSKITLHIPEF 1565
             +++T       S   +L  FC               EG+  +    SF     L +P  
Sbjct: 595  ASWDTDIDQFLGSAKSSLNEFCQKKSWEVPSWVCYQEEGMPHQ---KSFTYMAVLRLPGN 651

Query: 1566 GNVECNGDPRADKKSSFDSAALIMLHELERQGKI 1599
             ++EC G+P  +K+ + +SA+   L  L  QG +
Sbjct: 652  ISIECLGEPMKNKRLAMESASRGALWWLNSQGYL 685


>gi|443925066|gb|ELU43989.1| type III restriction enzyme [Rhizoctonia solani AG-1 IA]
          Length = 1442

 Score =  234 bits (598), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 203/750 (27%), Positives = 338/750 (45%), Gaps = 129/750 (17%)

Query: 29  DHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK 88
           D A+   + +  +   IPR+YQ ++F+ A   N I  ++TG+GKT IAVML+K I     
Sbjct: 3   DSAITQVAVAEATGRLIPRLYQQEIFQRAVNENVICAMDTGSGKTQIAVMLLKHIMSLRP 62

Query: 89  SNGF-KKLIIFLAPTVHLVHQQYDVIRVHTDFEV----------------EEYYGAKGVD 131
           ++   KK+ +FL  +V L  QQ D +       V                +++YGA GVD
Sbjct: 63  ADSNPKKVAVFLVASVPLAEQQGDFLESQLPLHVNVRPVFLLLAGAYADGQKFYGAMGVD 122

Query: 132 EWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMK 191
            WD + W K   ++DV+VMT Q+  D L  A  S        ID+ HH   NH Y +IM+
Sbjct: 123 YWDRERWAKAFAESDVMVMTAQVFHDLLNHAHWS--------IDKAHHCNKNHVYAQIMR 174

Query: 192 EFYHK--SDNKPKVFGMTASPV--VRKGVSSAMDCEGQISELESTLDSQVFTIEDKT-EM 246
             YH      +P++FGMTASP+  +R    S       +++L+ T+D++V  ++D   E+
Sbjct: 175 THYHHCPVSERPRIFGMTASPIFNIRNPAQS-------LAQLQETMDAKVLAVKDNVLEL 227

Query: 247 EVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTL 306
            +  P  +E   F  +     SD       +     +    L       + D DD     
Sbjct: 228 ALNAPKPQE---FVMECPPPSSDYSDYPRPTMWSVVSEFENL------LFPDPDD----- 273

Query: 307 RKQLSDYHAKILYCLDELGLICAYEAV----KICLEKVLKAQEECEIY--RQSSLQCKYF 360
              L D  ++  + L+ELG + A   V    +  +EK      E   Y  R SSL  +  
Sbjct: 274 ---LKDLTSRYKHALNELGPLAADYFVLLFIRRAIEKSTVGSSELGAYFSRASSLAPE-- 328

Query: 361 LEEVLHVIGSALPLADKIFLDFGFDYS--------------KAVDLGYISTKLHELLQLF 406
                   G + P+A + + D    Y+              K+  + +++ KL  L+ + 
Sbjct: 329 ------TGGDSSPVAGQTWSDLDNAYNEHLATIQERARGLDKSQMMSWLTPKLKILISI- 381

Query: 407 LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT-----VAYLTGSTTSVDA--LT 459
           L   ++     +IFVE+   A  +   +  VP L         V +  GS    +   + 
Sbjct: 382 LEANRADDFSALIFVEQRQVASALAWLLPLVPELRDWVKAAALVGHGDGSRAGFEGSGMA 441

Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
              Q+  + +FR G +NL+ AT V EEG+    C  V+R D P+T+  Y+QSRGRAR+H+
Sbjct: 442 HAAQRSTVRNFRSGSINLVIATSVAEEGLDFQACKLVVRLDAPQTMVGYLQSRGRARKHD 501

Query: 520 SQFILMLE----------RGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKT 569
           S ++++ +          RG      +++  I  E        ++      ++    V  
Sbjct: 502 SAYVVLTDPEGAKRYRGFRGAEPHLRRIYQRISEEE-------AQQDGEMDVEEEEDVDN 554

Query: 570 KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYT-PKPIF----KYKSAEEAYECELTL 624
           + Y+V+STGA VT  +++ L+H +C  L  D++   P P F    KY     A  C L  
Sbjct: 555 ERYVVKSTGAVVTPSTAIGLLHLWCSQLEVDRFTKPPAPEFHITGKYMCKISAPPCILNP 614

Query: 625 PSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNE 684
             + P   I GP  + ++ +++       +KLH++   +D+LLP  +  S+ + +S++ +
Sbjct: 615 ALSGP---IHGPLKKTRDGARRAAAFLFVQKLHKLEIFDDYLLPFKKRSSKADDLSQRLD 671

Query: 685 SLPGAGTTKRK-ELHGT-TPIRALSGRWGE 712
                GT +R+ EL  T TP       WG+
Sbjct: 672 -----GTLRREGELFDTITP-------WGD 689



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 146/321 (45%), Gaps = 41/321 (12%)

Query: 971  QSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVD-VPISVVKSLYLLP 1029
            QSHN    LV         K + S   T KP   V   P  + R+  +P  +V+ +  LP
Sbjct: 903  QSHNGLYGLV---------KITGSEQPTAKPSQIV--TPSHMARISPIPADIVRIVTHLP 951

Query: 1030 SVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLK 1089
            +++ ++  L      +E +    R   +P  L+LEALT       F  +RLE +GDSVLK
Sbjct: 952  NLLGQMTVLFRIDSAKEIL----RTNGVPLELLLEALTLPSVQAGFDYQRLETIGDSVLK 1007

Query: 1090 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRR-WVAPG 1148
             ++  HLF+ Y   HEGQLSA +   V N+ L ++G    L  ++   +   RR W  P 
Sbjct: 1008 VSMCTHLFIKYQGHHEGQLSAMKDSVVSNANLMRVGRQSPLSRFLITGSMPTRRTWSPPA 1067

Query: 1149 QLSLRPVPCECGV--DTLEVPLDGKFFTQ-DTKVVVGKPCDMGHRWMGSKTIADCAEALI 1205
              ++     + G   D+ E   D     + D+K    K          +K++ADC E+ +
Sbjct: 1068 SPTISETQDDSGEQDDSNEQKDDSNEQKENDSKGEFEKTS------FHTKSLADCTESTL 1121

Query: 1206 GAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYV---PRINEI----KDIE 1258
            GA Y+  G+ AAL + + LG+             T   LR  V    R +EI      +E
Sbjct: 1122 GATYLSRGVEAALEVGEALGLPL--------GGTTPWHLRREVDVFARKSEITMLFAPVE 1173

Query: 1259 SKIGYEFTVKFLLQEAITHAS 1279
             K+GY+F    L+ EA TH +
Sbjct: 1174 EKLGYKFKNASLVAEAFTHTA 1194



 Score = 48.1 bits (113), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 6/116 (5%)

Query: 1033 QRLESLMLASQLREEINCHSRNFHIPSSLILEALT--TLGCCESFSMERLELLGDSVLKY 1090
            ++ E  ML + + E++    +N    +SL+ EA T       +  S  RLE LGDS+   
Sbjct: 1161 RKSEITMLFAPVEEKLGYKFKN----ASLVAEAFTHTAYDLSQGPSYNRLEFLGDSLFDL 1216

Query: 1091 AVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVA 1146
             V   ++L +PK   GQ+S  RS  V  ST  KL    +L  +I  S+ + ++ VA
Sbjct: 1217 YVVKFMYLKFPKMTPGQMSWARSRLVNASTFGKLAVGLELHKHILTSSANLQKAVA 1272


>gi|391332351|ref|XP_003740599.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
          Length = 1610

 Score =  233 bits (594), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 194/660 (29%), Positives = 307/660 (46%), Gaps = 85/660 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK-----------DIAQAIKSNGFKKL 95
           R YQ+++F+ AK RNTI  L TG GKT I+V+L+K           D   A   +G K+ 
Sbjct: 24  RSYQIELFKSAKERNTIVCLGTGTGKTYISVLLLKHLEHEVSGCWVDGEPATPGSGGKR- 82

Query: 96  IIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL 155
            IFLAPTV LV QQ  V+  H   +V  Y GA  VD W  + W  E+  + VLVMTP IL
Sbjct: 83  SIFLAPTVPLVEQQGAVLGRHLSVKVGIYVGAMQVDLWSRERWVNELKAHGVLVMTPAIL 142

Query: 156 LDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRK 214
            +A    F+ L+ +  IV+DECH ATG+  Y  IMK +   +  ++P+V G+T S  V  
Sbjct: 143 YNAACHGFIPLNKISLIVMDECHRATGDDNYVSIMKLYKDLQPQDRPRVLGLTGS--VIN 200

Query: 215 GVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
                +    +I ELE+TL S   +      M    P                   K  +
Sbjct: 201 SALRGVQVTRRIRELEATLFSTASSASGLVSMYCTKP-------------------KEMI 241

Query: 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334
               S+   +   +  S +   +D DD  K  +K LS   +    C +E G  C    ++
Sbjct: 242 VSCPSRNPHNRLPIDASSMEDLEDCDDL-KDFQKILSGLSS----CYEECGAFCTLRLIE 296

Query: 335 IC---LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVD 391
                L + +   +  E  R+  +     LE +   +G + PL D               
Sbjct: 297 FRQRELSRNVGDSQYPEELREYLMPKMKILERMKKFLGKSPPLLD--------------- 341

Query: 392 LGYISTKLHELLQLFLSFGKSTQVLC-IIFVERIIAAKVVERF---VKKVPFLTHLTVAY 447
              +  K+H LL++  +F  +   LC I+FV+  + A V+ ++   + K      L  A+
Sbjct: 342 ---VPPKMHRLLEVLAAFRTNPAGLCGIVFVKLRVIAYVLYQWLGELSKTDDWRFLRCAF 398

Query: 448 LTG------STTSVD----ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
           + G      ST++ +     +  K Q+  + +FR G  NLL AT+VIEEGM VP C+ V+
Sbjct: 399 IVGHNQAPMSTSNREFENFKMNSKAQRRTIAAFRDGVYNLLLATNVIEEGMDVPACNLVV 458

Query: 498 RFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIR-SERSVTD--TALSR 554
           RFD P+   SY QS+GRAR   S ++++ +     +   + D  + +ER VT       R
Sbjct: 459 RFDAPRDARSYTQSKGRARARQSLYVVLCDENERLEVEDMIDSFQETERIVTTFCDQTRR 518

Query: 555 DPEACFLKACTYVKTKSYIVE--STGASVTTDSSVNLIHRYCEMLPSDKYYTPKP-IFKY 611
            P+A   ++ T ++   ++    +  A ++  S+++++  YC+ +  D+Y    P  F  
Sbjct: 519 SPDA--EESETVLRDDEFLEPFIAGEARISAKSAMSILCWYCQTIVHDQYSNSLPEFFTL 576

Query: 612 KSAEEAYECELTLPSNAPFQTIVGPTSR---NKNLSKQLVCLEACEKLHQVGALNDHLLP 668
              +E +   LT+P   P +  +    R    +  +K  + LE C KLH+   L +HLLP
Sbjct: 577 DKNDEGFTMSLTMPLLCPVRESITNEDRPMPTRAKAKAYLALEMCRKLHEKRELTEHLLP 636



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 144/361 (39%), Gaps = 84/361 (23%)

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVS---LVDD-CITRASLRS--- 1246
            ++  AD  +A+ G      G   AL +M+WLG++    +     VD   +   SLR    
Sbjct: 1243 ARVAADAVKAITGLAVDKCGPSGALRVMRWLGLEFGRSIDSPDFVDAFALNLDSLRVSDS 1302

Query: 1247 ---YVPRINEIKDIESKIGYEFTVKFLLQEAITHAS------------------------ 1279
                + R+++I+ +ES++ Y F  K L+ EAITH S                        
Sbjct: 1303 DAVILNRLHQIETVESRLRYRFEHKALVLEAITHHSYRGDSLTQSNVQLCSIGAVVIEYL 1362

Query: 1280 -----------VQEFYCYQ------------------NLYKHLQHCSTLLLSQITEYVKS 1310
                       V+ +  ++                   L+K+L + +  L + I  Y+  
Sbjct: 1363 ISKFIASLPLDVESYNLFELRASICSAVNHAHIVAKNGLHKNLLYTNQSLFTVIRNYIDC 1422

Query: 1311 F----PKPGETTDSGPSM-----KAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILS 1361
                 P+P ++     S      + P AL ++L ++VGAV ID+  NL+ VW ++  +  
Sbjct: 1423 LDDYEPQPSKSLGDWESDDTDDDRVPLALAEMLMALVGAVFIDSGKNLEIVWSVYAELCG 1482

Query: 1362 PIV--TPDKLELPPLRELIELCDS--LGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ 1417
              +    + + + P+REL          Y +  +   +G+ +   L +Q     +    Q
Sbjct: 1483 EQILRLANNIPISPIRELFARFPGSYFEYSLSWDDVYEGDFIEVTLCVQYPGGTIARFSQ 1542

Query: 1418 ERSRKA-AKGKAASQLLKKLEVCE--KRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQ 1474
              + KA  +   A + L KLE  E  K I K      K+ ++  Q  ++ L E  S K +
Sbjct: 1543 LANSKAEGRISIAKKFLNKLETQEQQKNIEK-----NKIAEEYLQILEKALLEAESLKSR 1597

Query: 1475 K 1475
            K
Sbjct: 1598 K 1598


>gi|336270596|ref|XP_003350057.1| hypothetical protein SMAC_00946 [Sordaria macrospora k-hell]
 gi|380095449|emb|CCC06922.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1586

 Score =  233 bits (593), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 191/656 (29%), Positives = 327/656 (49%), Gaps = 78/656 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA---IKSNGF-KKLIIFLAP 101
           PR YQ+++FE AK++NTIAVL+TG+GKT+IA ML++ +       +  GF +++  FL  
Sbjct: 122 PREYQVELFERAKQQNTIAVLDTGSGKTLIAAMLLRWVINGELEDREKGFPRRIAFFLVD 181

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYG--AKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            V LV QQ+  +  + DF +E+  G   +GV+      W++ +  N+V+V T +IL  AL
Sbjct: 182 KVALVFQQHSFLTKNLDFPMEKLCGEMMEGVES--KAFWKEALEHNEVVVCTAEILNTAL 239

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKSDNKPKVFGMTASPVVRKGVS 217
             +++ +D +  ++ DE HH   +HPY +I+K FY   K + +P++ G+TASP     V 
Sbjct: 240 HHSWIRMDQINLLIFDEAHHTKKDHPYARIIKNFYVDEKLERRPRILGLTASP-----VD 294

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
           + +D     +ELE+ L SQ+ T  D   ++  +      CR   +++      +G+ + S
Sbjct: 295 ANVDPGRAAAELEALLHSQIATAADPASLQPKI------CR--PKAELLVEYARGRPD-S 345

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL 337
            +  +  L KL G Q   +K      K +    S       +C+D       Y  +    
Sbjct: 346 ETALNKQLRKLVGGQ-ELFK------KPVNFTTSAASTLGPWCVDR------YWQLYFKQ 392

Query: 338 EKVLK--AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADK-IFLDFGFDYSKAVDLGY 394
           E ++K  A+ E ++ + S+L      E+ +  +  A  L +   FL        A+D   
Sbjct: 393 EDIVKLEARTERDLMKASAL--GEITEKNVKQVRDAHELVNAHTFL------PAALDPAM 444

Query: 395 ISTKLHELLQLF---LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL----TVAY 447
            S K+  L+++       G  TQ  CI+FV +   A ++   +++    +H+        
Sbjct: 445 FSDKVIMLVRILRDQFETGVGTQ-RCIVFVRQRNTAMLLADLLQQPGIKSHIPSIVAEVL 503

Query: 448 LTGSTTSVDALTPKV----QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK 503
           + G TT    +  KV    Q  ++  F+ G++N LFAT V EEG+ +P+C+ VIRFDL  
Sbjct: 504 VGGGTTGSGYVNAKVNFQQQNRIIRKFKLGEINCLFATSVAEEGLDIPDCNIVIRFDLYD 563

Query: 504 TVSSYIQSRGRARQHNSQFILMLERGN------LKQRNKLFDIIRS-------ERSVTDT 550
           T+  YIQSRGRAR+ +S++I M+E+GN      + Q  K  D +R+       +R +TD 
Sbjct: 564 TLIQYIQSRGRARRPDSRYIQMIEKGNPEHYTKIVQAKKAEDTLRNFCKALPEDRKLTDN 623

Query: 551 ALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK 610
            ++ D    +L      K + Y V  TGA ++   S+  +  +   LP     +  P + 
Sbjct: 624 HMNLD----YLLRKEKGK-RQYTVPETGAKLSYMQSLICLANFTATLPHPPETSLSPEYY 678

Query: 611 YKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL 666
             +    ++CE+ +P  +P ++ VG    +K  +K     E C  L + G L++HL
Sbjct: 679 ITTVPGGFQCEVVMPDASPIKSAVGKIHVSKGAAKCAAAFELCLALLKAGHLDNHL 734



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 124/324 (38%), Gaps = 62/324 (19%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P  V   L   PS++ R+ES ++A        C      +   L LEA T         
Sbjct: 1029 IPADVAAMLLCFPSIIHRVESNLVALDA-----CKLLGLDLRPDLALEAFTKDSDNSNEH 1083

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G  +++  ERLE LGDS LK A +  ++   P K E +    R   +CN  
Sbjct: 1084 DVEQVNFQTGMGDNY--ERLEFLGDSFLKMATTMSIYTLIPDKGEFEYHVERMLLICNKN 1141

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L     +  L+ YIR  +F+ R+W   G L L+                GK     T+ V
Sbjct: 1142 LLNNALEVGLEEYIRSMSFNRRQWYPEG-LVLK---------------KGKNKDARTRHV 1185

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGAYYV----GGGLIAALYMMKWLGIDADLEVSLVD 1236
                       +  K+IAD  EALIGA Y+     G    A+  +  +  D    +    
Sbjct: 1186 -----------LADKSIADVCEALIGAAYLTGQEKGSFDMAIKAVTAMVRDKKHRMMNYG 1234

Query: 1237 DCITRASLRSY--VPRINEIKDIESK----IGYEFTVKFLLQEAITHASVQEFYCYQNLY 1290
            D        S+   P  +  +D+  K    +GY+F    LL+ A  H +    Y     Y
Sbjct: 1235 DYYAVYQKPSWQTAPANSAQRDMADKFSERMGYKFKHPRLLRAAFQHPTYPSLYERLPSY 1294

Query: 1291 KHLQHCSTLLLSQIT-EYV-KSFP 1312
            + L+     L   +  +Y+ + FP
Sbjct: 1295 QRLEFLGDALFDMVAVDYLFRKFP 1318


>gi|429137921|gb|AFZ74931.1| dicer 2 [Aphis glycines]
          Length = 1628

 Score =  232 bits (592), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 179/667 (26%), Positives = 341/667 (51%), Gaps = 59/667 (8%)

Query: 32  VDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI-KSN 90
           +D PS  T+ I  +PR YQL++ E  K+ NTI  L TG+GKT IA ML+K++   + K  
Sbjct: 1   MDQPSKDTSGI--VPRKYQLELLEDVKKSNTILYLPTGSGKTYIATMLVKNLGDCLTKPI 58

Query: 91  GF-KKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLV 149
           G  +K   F+  +V LV QQ + +R H  + +  + G   VD W  + W + + K  +LV
Sbjct: 59  GHGRKWTFFIVQSVPLVAQQANNLRRHLPWSIGTFSGDMNVDFWSQKHWDEILEKCHILV 118

Query: 150 MTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS---DNKPKVFGM 206
           MT QI L+ L   ++ +     ++ DECHHA   HP+ +IM+  +  +   D +P + G+
Sbjct: 119 MTAQIYLNNLHHGYMHIKDANLLIFDECHHAVALHPFKQIMQVLHDSNLNIDERPHILGL 178

Query: 207 TASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFC 266
           TA+ +     S+  + + ++++L++T ++ + T  D+  +++F    +E    YD+  + 
Sbjct: 179 TATLI----NSNTKNVKDELTKLQNTFNATIKTKYDEN-IQIFSARPEEFISLYDE--YI 231

Query: 267 GSDLKGKLEVSWSKFDASLSKLQG-SQLNCYKDMD-----DKHKTLRKQLSDYHAKILYC 320
             D    +    SK    L K Q  +++   K+ +     +  K   K  ++Y   I   
Sbjct: 232 LDDEMVAITQRISKIVDHLKKFQAPAKIEPIKENNEVYYLENQKQSSKNFANYFLDIEVN 291

Query: 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
           L + G   A+ A    + ++ K ++ C   +  +         ++ ++ S + +  K+  
Sbjct: 292 LSDGGPYIAFLATWHFIVEIEKKRKICTDSKNHT---------IMSMVLSEVTIIRKLVF 342

Query: 381 DFGFDYSK-----AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435
           D+   +S      +  L  +S KL +L+++ LS  K+T   C++FV+R   AK++  ++K
Sbjct: 343 DYMNKHSSINNGHSTTLNNVSPKLKKLMEI-LSSIKATDT-CLVFVDRRTTAKILYHYIK 400

Query: 436 KVPFLT-----HLTVAYLTG-----STTSVDALTPKVQ-KEVLESFRGGKVNLLFATDVI 484
              F+      ++   ++ G     S  S + +  K Q  ++++ F    +N+L  ++V+
Sbjct: 401 D--FIQEYNQENIVCEFIVGARGIISPDSKEMVYKKQQNNDIIKKFNDNIINVLITSEVL 458

Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL-FDIIRS 543
           EEG+ +  C+YVIR+D PK   SY+QS+GRAR  +S+FI+M+        N+L F+  +S
Sbjct: 459 EEGVDIQTCNYVIRYDSPKNFPSYVQSKGRARSADSKFIIMVP-------NQLKFEKTQS 511

Query: 544 ERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYY 603
           + +  +  + +      +      +  + + ++  A +T D ++++I+RYC  LP D++ 
Sbjct: 512 DYNKMEEEIVKILVDNDIDDENNDENMTEVFKTKHAILTHDVAISIINRYCFSLPQDRFT 571

Query: 604 TPKPIFKYKSAEEAY-ECELTLPSNAPFQT-IVGPTSRNKNLSKQLVCLEACEKLHQVGA 661
              P +        + + +L LP N+  +T I G    +K  +K+     AC +L++VGA
Sbjct: 572 DLSPEWYIAQNNNKFKKYKLKLPINSVIKTPIDGIFCASKKNAKKSAAFNACIELYKVGA 631

Query: 662 LNDHLLP 668
           L+++LLP
Sbjct: 632 LDEYLLP 638



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 176/447 (39%), Gaps = 126/447 (28%)

Query: 1027 LLPSVMQRLESLMLASQ-------LREEINCHSRNFHIPSSLILEALTTLGCCESFSMER 1079
            +L +V+  + +L L +        L +E++  ++N     S IL+A+T     + F+ ER
Sbjct: 1095 ILKNVLTEMNTLNLTNNTSPTLGPLSKEVS--TKNIGPRQSDILKAITPPFANDMFNYER 1152

Query: 1080 LELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAF 1139
            +E  GDS LK+AVS  LF  +P  +EG L+  +   V N  L  +G +  L  Y+  + F
Sbjct: 1153 METYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKIVGNRNLFYVGRNLNLGSYLTVNVF 1212

Query: 1140 DPRR-WV-----APGQLSLRPVPCECGVDTLE---VPLDGKF---FTQDTKVVVGKPC-- 1185
            DP   W+      P  L       +   D L    +P D +     + +T   + K    
Sbjct: 1213 DPNMDWIPPCFGVPQTLKEIIEKGDLQSDVLHQINIPKDNQIIGILSDNTWKEIEKEIIK 1272

Query: 1186 -------------------DMGH---------RWMGSKTIADCAEALIGAYYVGGGLIAA 1217
                                +GH         + +  K +ADC E+LIG Y    G+   
Sbjct: 1273 FKELSDITMSDSDGEEDIPRVGHSQSDLFIYKQSVSDKMVADCVESLIGTYVYKRGVEVG 1332

Query: 1218 LYMMKWLGI------DADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLL 1271
              +++ LGI      DA  +   +++     S    +P     + +E +IGY F  K LL
Sbjct: 1333 FKVLQGLGIIPKQFIDA-FKPKPIENIYNDLSFSKVLPGY---ELLERRIGYSFKHKHLL 1388

Query: 1272 QEAITHASVQEFY--CYQNL-------------YKHLQHC------------STLLLS-- 1302
             +A+TH + Q  Y  CYQ L                +QHC            S+L+ +  
Sbjct: 1389 AQALTHPTYQFGYTECYQRLEFLGDAILDFLITTYIIQHCYQKTPGEITDIRSSLVNNIT 1448

Query: 1303 -------------------QITEYVKSFPKPGETTD-----------------SGPSMKA 1326
                               Q+TE +  F +  +  +                 +  S+  
Sbjct: 1449 FASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQEILYLIEESDCYAAESVDV 1508

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVW 1353
            PK LGDL ES++ A+ +D   +L+ VW
Sbjct: 1509 PKVLGDLFESLIAAIYLDCGRDLNFVW 1535


>gi|302693114|ref|XP_003036236.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8]
 gi|300109932|gb|EFJ01334.1| hypothetical protein SCHCODRAFT_31237, partial [Schizophyllum
           commune H4-8]
          Length = 1342

 Score =  232 bits (591), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 201/661 (30%), Positives = 296/661 (44%), Gaps = 78/661 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ ++F  A+  N IA L+TG+GKT I +MLIK IA   ++    KLI+FL P V LV
Sbjct: 1   RQYQEEIFRQAQAGNRIAALDTGSGKTYIGLMLIKWIASQPQNK--DKLIVFLVPRVALV 58

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            QQ + I  ++   V + +G   +D  D + W      +DVLVMT QI LD L  +  S+
Sbjct: 59  EQQGNFIAANSTLRVTQKHGQNALDMADREGWAAVFATSDVLVMTAQIYLDLLTHSHWSI 118

Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMDCEGQ 225
                I+ DECHHA  N PY +IM E+ H     +P+VFG+TASP+       A +    
Sbjct: 119 AHTSLIIFDECHHAQKNDPYRQIMDEYRHCAPGQRPRVFGLTASPIW-----DARNPGKA 173

Query: 226 ISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFY---DQSKFCGSDLKG---KLEV-- 276
           ++ LE+ LD+QV  +     E++      +E  + Y   D  +       G    +EV  
Sbjct: 174 LAALETKLDAQVVGVRLHAGELDAHTARPREVIKTYRALDPEEVGRGSFPGMGRSVEVFG 233

Query: 277 --SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334
              W   D    K+ G           ++      L  Y A  LY   EL  I A     
Sbjct: 234 TLDWEGADVMWRKIMG-----------RYDVTLASLGPYCAS-LYLYQELSDIVAR---- 277

Query: 335 ICLEKVLKAQEECEIYRQ------SSLQCKYFLEEV--LHVIGSALPLADKIFLDFGFDY 386
                 L+ Q E    R       SS   K  L     L  I   L   +  F D     
Sbjct: 278 ------LRPQAETAFERAADDPAGSSTTGKMSLAHARCLLAIEDILTDYEPYFSDLA--A 329

Query: 387 SKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT-V 445
           S A+   + S K+H L+ + L+   +T    I+FV++   A  +   + ++  L  L   
Sbjct: 330 SDALLDDWFSPKVHALVDVLLAQDLATS-RGIVFVDQRQVALCLALILPRLSRLQGLVRC 388

Query: 446 AYLTGSTTSVDALTPKV---QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
           A   G    +D   PK    Q++V   FR G+VNLL AT V EEG     C  V+RFD  
Sbjct: 389 ASFIGQNPGIDG--PKAIGSQRDVASQFRSGEVNLLIATSVAEEGHDFQACDLVVRFDPL 446

Query: 503 KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIR----------SERSVTD-TA 551
           + +  Y+QSRGRAR  +S F++ML  G+   R K +D  R          + RS  D T+
Sbjct: 447 QHLVGYLQSRGRARNKSSMFVVMLPEGDEPSRAK-YDFFRKCEPQLREVYNTRSAEDATS 505

Query: 552 LSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKY 611
           ++ D +A  L      + + ++V STGA +T D+++ L+   C ++P D  ++P P   Y
Sbjct: 506 VNVDDDAEELSPEMLAERERFVVPSTGAILTYDNAIGLLGHLCSLIPRDP-FSPPPAPVY 564

Query: 612 KSAEEAYECELTLPSNAPFQ----TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
                 +   + LP + P         G T   K  +K+         LH     + +LL
Sbjct: 565 TG---DFISTVQLPRSIPLPPAELVFQGATKATKKEAKRSAAFRTVRYLHAKDVFDAYLL 621

Query: 668 P 668
           P
Sbjct: 622 P 622



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 159/388 (40%), Gaps = 97/388 (25%)

Query: 1015 VDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCES 1074
            +D+   ++ +L++LPS+++R   +  A + R  +       +I   L+++ALT       
Sbjct: 886  IDLSEDILSALHILPSLLRRATDVYRADRARLALGLP----YIERDLLIQALTLPCAGMP 941

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
            F+ +RLE LGD+VL+ + + HLF  YP +HEGQL+  R   + N  L     + +L+ ++
Sbjct: 942  FNNQRLETLGDAVLELSTTVHLFNKYPHRHEGQLTPLRQICISNKCLLTRAREVQLERFL 1001

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
                     W                            + +D++V    P     R    
Sbjct: 1002 TSETHSLSIWD---------------------------YVEDSEV----PARCARRLFPR 1030

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEI 1254
            +++ DC EA++GA Y+ GG+  AL+    LG+     V        R   R  VP  +  
Sbjct: 1031 RSLQDCMEAILGASYLTGGIDTALHAGTALGLAFGGSVPWP----RRYPRRRRVPTPDLF 1086

Query: 1255 KDIESKIGYEFTVKFLLQEAITH---ASVQEFYCYQNL---------------------- 1289
             ++++K+GY F    LL EA+TH   AS+  +  Y+ L                      
Sbjct: 1087 SELQAKLGYTFRDGGLLCEALTHSSFASLDSYGSYERLEFLGDAVINLAVVDYLYRKFPD 1146

Query: 1290 -----------------------YKHLQHCSTLLLSQI---------TEYVKSFPKPGET 1317
                                    KHLQ   ++L++ +            ++  P P E 
Sbjct: 1147 ANSDQLSLPRARAVCNQALSALSVKHLQLHKSVLVNNVELSIAINKHAPILEDKPYP-EI 1205

Query: 1318 TDSGPSMKAPKALGDLLESIVGAVLIDT 1345
               G  +  PK L D+ ESIVGAV +DT
Sbjct: 1206 LVKGWKLDPPKVLSDIFESIVGAVFVDT 1233


>gi|324500060|gb|ADY40039.1| Endoribonuclease dcr-1 [Ascaris suum]
 gi|333440972|gb|AEF32761.1| DCR-1 [Ascaris suum]
          Length = 1970

 Score =  231 bits (588), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 207/721 (28%), Positives = 337/721 (46%), Gaps = 74/721 (10%)

Query: 37  SSTNSIN---FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD----IAQAIKS 89
           +STN ++   F PR YQ+++ + A R N I  L TG+GKT IAV+LIK+    + + +++
Sbjct: 27  TSTNEVDKNFFTPRDYQIELLDKACRGNVIVPLGTGSGKTFIAVLLIKEHTCKLIEPLEN 86

Query: 90  NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC-WQKEINKNDVL 148
            G  K   FL   V LV QQ   I  HT  +V   +G    D W  Q  +   I ++ V+
Sbjct: 87  GG--KRAFFLVDKVSLVDQQAAHIEHHTTLKVGRMHGHLNSDIWSDQSKFNTFIAEHQVV 144

Query: 149 VMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEFYH-KSDNKPKVFGM 206
           V T Q+ LD L  AF +++    ++ DECHH  G+ H Y  IM  +       +PK+ G+
Sbjct: 145 VSTAQVFLDVLDHAFFNMNNAALLIFDECHHVLGSKHAYRVIMHRYSQLPKSERPKILGL 204

Query: 207 TASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE---SCR--FYD 261
           TAS +  K   S +  E  + +LE  + S + T  D   +  +    KE    C    YD
Sbjct: 205 TASLINNKTPPSNL--ERVLEKLELIMQSNIETASDLVSVAKYGAKPKEFVIECEDFIYD 262

Query: 262 QSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCL 321
           + K            +  K  + L  L+   + C +   +     RK L +   + L   
Sbjct: 263 ECK------------ASRKVISLLEDLRAMCMECREFHPEFDVDPRKPLMEAINRTLSVF 310

Query: 322 DELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLD 381
            ++G  CA+   K+C  ++ + Q +  I  Q  L  K  L   L +  + + L+ KI  +
Sbjct: 311 KQMGPWCAW---KVC--QLFQRQLKKHI-GQPFLTEKQIL--FLQMGETTMRLSKKILDE 362

Query: 382 FGFDYSKAVDLG-YISTKLHELLQLFLSFGKST--------QVLCIIFVERIIAAKVVER 432
             F      +L   +  ++  L+++   +  S             IIFV++   A V+  
Sbjct: 363 KVFGVKCYAELKPLLPNRIVRLMEILDYYSPSNISKIDPNFSFCGIIFVKQRYVAYVMNT 422

Query: 433 FVKKVP---------FLTHLTVAYLTGSTTSVDALT-PKVQKEVLESFRGGKVNLLFATD 482
            VK +           ++   + Y + +  S + +   K Q+EVL  FR  ++NLL AT 
Sbjct: 423 LVKAIAKWDKDRFGYVVSDFVIGYSSANIGSEETMALHKRQEEVLRKFRQKQLNLLVATS 482

Query: 483 VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQ-RNKLFDII 541
           V+EEG+ V  C+ VIRFD P    +YIQS+GRAR+  + + +++E  +     + L D  
Sbjct: 483 VLEEGVDVKQCNVVIRFDRPTDYRAYIQSKGRARKEGASYYILIEHSDRANCSSDLKDFF 542

Query: 542 RSERSVTDTALSRDPEACFLKACTY----VKTKSYIVESTGASVTTDSSVNLIHRYCEML 597
           + E+ +     +       +  C+      K   Y+VESTGA VT  S++ L++RYC  L
Sbjct: 543 QIEQMLLKRYRTAHNPPDGMPLCSEQEVDAKVAPYVVESTGARVTMSSAIALVNRYCAKL 602

Query: 598 PSDKYYTPKP----IFKYKSAEEAYECELTLPSNAPFQTIVGPTS--RNKNLSKQLVCLE 651
           PSD +    P    I    +    Y+ EL LP N+P +  +  T+    K L++  V LE
Sbjct: 603 PSDIFTRLVPQNRIIPVSVNGSILYKAELLLPINSPLKNGIMLTTPMETKKLAQMAVALE 662

Query: 652 ACEKLHQVGALNDHLLPSVEEP-SENNLISKKNESLPG----AGTTKRKELHGTTPIRAL 706
            C +LH+   LNDHLLP  ++  +   L    +E +P      G+ +RK+L+     + L
Sbjct: 663 TCRRLHEHKELNDHLLPVGKDTITLTALDDDPDEFIPNMNYKVGSARRKQLYDKRMAKGL 722

Query: 707 S 707
           +
Sbjct: 723 N 723



 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 134/343 (39%), Gaps = 74/343 (21%)

Query: 1046 EEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHE 1105
            EE +  S  + +    +L+ALT     +  ++ERLE +GDS LKYAV+ +LF   P++HE
Sbjct: 1434 EEDSIDSHPYGVSPCTLLQALTMSNASDGINLERLETVGDSFLKYAVTDYLFHMNPEQHE 1493

Query: 1106 GQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVPCECGVDT- 1163
            G+LS  RS  V N  L++LG  R L   +  + FDP   W+ P              D  
Sbjct: 1494 GKLSFARSKEVSNCNLYRLGKKRNLPSLMVGAKFDPNDSWLPPCYAPTSDFKAPNSSDAE 1553

Query: 1164 -----LEVPLDGKFFTQDT----KVVVGK---------------------PCDMGHRWMG 1193
                 +E  L+G    + T    KV  G                      P  +   W  
Sbjct: 1554 ERDKIMEKVLEGSAAIEQTNFQVKVRTGWDEADSSSEVRQISDGVETINFPRGVASTWDV 1613

Query: 1194 SKTIADCAEALIGAYYVGG------------------GLIAALYMMKWLGIDADLEVSLV 1235
            ++ I+     ++   Y+G                   G  A L  MKW+G+    E   +
Sbjct: 1614 AEEISPLPYNMLTQQYLGDKSIADAVEALIGAHLLELGPTATLKFMKWVGLKVLTEPVTL 1673

Query: 1236 DDCITRASLRSYVP-----RINE------IKDIESKIGYEFTVKFLLQEAITHASVQEFY 1284
            D  + R       P     ++NE         +E  I Y F  +  L +A THAS     
Sbjct: 1674 DPPLLRFIDTPQEPELAICKLNEFWVQFQFSKLEDSICYRFKDRAYLLQAFTHASY---- 1729

Query: 1285 CYQN----LYKHLQHCSTLLLSQ-ITEYVKSFPK---PGETTD 1319
             Y+N     Y+ L+     +L   IT ++   P+   PG  TD
Sbjct: 1730 -YKNRITGCYQRLEFLGDAVLDYVITRFLFQHPRQYSPGVLTD 1771



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 11/115 (9%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV-----TPDKLELPPLRELIELC 1381
            PKA+GD+ ES+ GA+ +D+  +LD VWR+F  ++   +      P K    P+REL+EL 
Sbjct: 1847 PKAMGDIFESVAGAIYLDSGRSLDVVWRVFYNLMKETIEECCNNPPK---SPIRELLELE 1903

Query: 1382 DSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1436
                 F K    L+   V   + +Q K     G G  RS + AK  AA + L+ L
Sbjct: 1904 PERARFSKLERILETGKVRVTVDIQGK-CRFTGMG--RSYRIAKCTAAKRALRYL 1955



 Score = 47.4 bits (111), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 903  DAKNLKDMVVLAIHTGR----IYSIVEIVN-NSSAESPFDGNTDDDSKTFVNYFSEKYGI 957
            D    +D VV+  +  +     Y + EI++ N  ++ P     D+    F +YF +KY I
Sbjct: 891  DVTKFQDAVVMPWYRDKEHPSFYYVAEIIDANPGSKFP-----DEKFANFNDYFIQKYNI 945

Query: 958  VLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGK---GSKSGMNTKKPQMHVHMPPELLVR 1014
             +    QPLL +  + +  NLL+  +      +     K G  + + Q+ V   PEL+  
Sbjct: 946  EIYDQQQPLLDVDYTSSRLNLLMPRHTSRSRTRVMEERKPGETSSQGQILV---PELVDV 1002

Query: 1015 VDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
              +  S+   +  LP+++ R+  L+LA +LRE I
Sbjct: 1003 HPIAASLWNVIAALPTLLYRINCLLLADELRETI 1036


>gi|340960215|gb|EGS21396.1| hypothetical protein CTHT_0032530 [Chaetomium thermophilum var.
           thermophilum DSM 1495]
          Length = 1596

 Score =  230 bits (587), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 189/664 (28%), Positives = 313/664 (47%), Gaps = 91/664 (13%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK----KLIIFLAP 101
           PR YQL++FE AK +NTIAVL+TG+GKT+IA +L++   Q    N  K    ++  FL  
Sbjct: 133 PRDYQLELFERAKEQNTIAVLDTGSGKTLIAALLLRWTLQNELENRAKGMSRRVAFFLVD 192

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVD-EWDSQCWQKEINKNDVLVMTPQILLDALR 160
            V LV QQ+ V+  + D+ ++++ G    D E D   W K   +N  +V T  IL   L 
Sbjct: 193 KVALVLQQHAVLACNLDYPIDKFCGEMIEDVEEDKSFWDKTFAENMAIVCTADILYKCLA 252

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKSDNKPKVFGMTASPVVRKGVSS 218
            +++ +D +  +V DE HHA  NH Y +I+K+FY   + D +P++ GMTASP     V +
Sbjct: 253 HSYIRMDEINLLVFDEAHHAKKNHTYARIIKDFYVDVEEDKRPRILGMTASP-----VDA 307

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
            +D +   +ELE  L +Q+ T  D   ++                 +  + LK +  V +
Sbjct: 308 QVDPKVAAAELEGLLHAQIATAADPAALQ-----------------YTLTRLKAEEIVEF 350

Query: 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILY---CLDELGLICA--YEAV 333
            +             N    ++ + K L  Q   +H    +      ELG  CA  Y  +
Sbjct: 351 DR----------RPDNWETPLNQRLKMLVGQYEVFHKPFAFTETACAELGPWCADRYWQL 400

Query: 334 KICLEKVLKAQEECEI-------YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
               E + + +  CE+       YRQ + +    + +   ++ +          +FG   
Sbjct: 401 FFREEDLARLEARCEMEILGVSAYRQDTREQVSRVRQAYDLVKNH---------EFG--- 448

Query: 387 SKAVDLGYISTKLHELLQLFL-SFGKSTQ-VLCIIFV-ERIIAAKVVERFVKKVPFLTHL 443
              +    +S+K+ EL+++    F    Q   CI+FV +R  A+ +V+   +    +  L
Sbjct: 449 RPKLSTDSLSSKVIELVKVLRKQFEDPDQDPRCIVFVKQRNTASLLVDLLQQPEMHIEGL 508

Query: 444 TVAYLTGSTTSVDA------LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
               L GS  + DA      ++ + Q   +  FR G +N +FAT V EEG+ +P+C+ +I
Sbjct: 509 KSGMLVGSGRA-DAHWDNTKVSFRNQVRTIIKFRKGVLNCIFATSVAEEGLDIPDCNVII 567

Query: 498 RFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF------DIIR-------SE 544
           R+DL +T+  YIQSRGRAR+H S +I M+ERGN + R +L       D +R        +
Sbjct: 568 RYDLNETLIQYIQSRGRARRHGSIYIHMVERGNPRHRRRLHENKANEDALRRFCEALPED 627

Query: 545 RSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYT 604
           R +T    + D    FL+    +  + YIV  TGA +    ++ ++  +   LP      
Sbjct: 628 RKLTGNNFNMD---YFLR--KEMGQQQYIVPGTGAKLNYKQALVILANFVSSLPHPPETV 682

Query: 605 PKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALND 664
             P +   +    ++CE+ LP  +P ++  G     K ++K     E C KL +   L+ 
Sbjct: 683 LAPEYVICAVPGGFQCEVMLPPQSPVRSATGKVHPRKAMAKCSAAFELCLKLIKGKYLDA 742

Query: 665 HLLP 668
           HL P
Sbjct: 743 HLRP 746



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 80/210 (38%), Gaps = 46/210 (21%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P       Y  P+++ R+ES ++A        C      I   L LEALT         
Sbjct: 1045 LPAKTAMMAYSFPAIIHRIESNLIALDA-----CRLVGLDIRPDLALEALTKDSDNTGEH 1099

Query: 1068 -----TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
                 +       + ERLE LGD  LK A +  +F   P K E +    R   +CN  L 
Sbjct: 1100 DAEQISFQPGMGNNYERLEFLGDCFLKMATTIAIFTLIPDKEEFEYHVERMLLICNRNLF 1159

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
                + KL+ YIR  AF+   W  P  L+L+                        K +  
Sbjct: 1160 NNALEFKLEEYIRSMAFNRHSWY-PNNLTLK----------------------SGKTIQP 1196

Query: 1183 KPCDMGHRWMGSKTIADCAEALIGAYYVGG 1212
            +   +    +  K+IAD  EALIGA  + G
Sbjct: 1197 RRTHL----LADKSIADVCEALIGAALLTG 1222


>gi|367045744|ref|XP_003653252.1| hypothetical protein THITE_2048914 [Thielavia terrestris NRRL 8126]
 gi|347000514|gb|AEO66916.1| hypothetical protein THITE_2048914 [Thielavia terrestris NRRL 8126]
          Length = 1591

 Score =  230 bits (586), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 214/791 (27%), Positives = 363/791 (45%), Gaps = 80/791 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGF-KKLIIFLAP 101
           PR YQL++FE AK +NTIAVL+TG+GKT+IA +L++   Q     +S G  K++  FL  
Sbjct: 137 PRDYQLELFERAKAQNTIAVLDTGSGKTLIAALLLRWTIQNELENRSKGLPKRVAFFLVD 196

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS-QCWQKEINKNDVLVMTPQILLDALR 160
            V LV QQ+ V+  + D+ +E++ G   VDE  S + W K  ++N  +V+T +IL   L 
Sbjct: 197 KVALVFQQHAVLACNLDYPIEKFCG-DMVDEVSSKEFWDKTFDENMAIVLTAEILYQCLH 255

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY---HKSDNKPKVFGMTASPVVRKGVS 217
            +++ +D +  +V DE HH   NHPY +I+K+FY        +P++FGMTASP     V 
Sbjct: 256 HSYIRMDQINLLVFDEAHHTKKNHPYARIIKDFYIEVKDEGQRPRIFGMTASP-----VD 310

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
           + +D     +ELE+ L SQ+ T+ D   ++    +AK    F  + +    D +  L   
Sbjct: 311 AQIDPVVAAAELEALLHSQIATVADTAVLQ--HTAAKPEHEFLVEYERRPPDWETDL--- 365

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRK--QLSDYHAKILYCLDELGLICAYEAVKI 335
               + +L +L G            H+  +K    +D  A       ELG  CA    ++
Sbjct: 366 ----NRALKELVGG-----------HRIFKKPFAFTDTAAA------ELGPWCADRYWQL 404

Query: 336 CLEK----VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVD 391
              +     L+++ E E+ R+ +      ++E +  +  A  L ++            + 
Sbjct: 405 FFREDNAVKLESRTERELLREFAYHQS--MDEHIGKVKQAYQLVNQHRFP-----RPGLS 457

Query: 392 LGYISTKLHELLQLFLS--FGKSTQVLCIIFV-ERIIAAKVVERFVKKVPFLTHLTVAYL 448
              +S+K+  L+++      G  T   CI+FV +R +A  +V+   +    +  L    L
Sbjct: 458 PHLLSSKVILLVRILWDQFNGGDTNRRCIVFVRQRNVATLLVDLLQQPEMKIPGLKPGVL 517

Query: 449 TG-----STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK 503
            G     ++   + +T + Q   +  F+ G++N +FAT V EEG+ +P+C+ +IR+DL  
Sbjct: 518 VGGGRPEASWDNEKVTYRDQVLTIIKFKKGELNCIFATSVAEEGLDIPDCNVIIRYDLND 577

Query: 504 TVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKA 563
           T+  YIQSRGRARQ  S +I M E+GN    ++L  + +    V        PE   L A
Sbjct: 578 TLIQYIQSRGRARQAGSVYIHMAEKGNADH-SRLLSLNKQGEDVLRKFCEAMPEDRKLNA 636

Query: 564 CTY---------VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA 614
            T+            + Y V  TGA +    S+  +  +   LP     +    +     
Sbjct: 637 NTFDMDYFLRKEKDQRQYTVPETGAKLNYKQSMACLATFVASLPHPPEVSLTADYLVLPV 696

Query: 615 EEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPS 674
              ++CE+TLP ++P +++ G    +K ++K     E C  L +   L+ HL P   +  
Sbjct: 697 PGGFQCEVTLPESSPIRSVTGRVHLSKVVAKCSAAFEMCLLLIKGKYLDQHLRPVFTK-- 754

Query: 675 ENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIY 734
              L + +N  L  A ++K+KE +       +    GE     LH      A        
Sbjct: 755 --QLPAMRNARL--AVSSKKKEQYKMRIKPEIWSHLGEPTE--LHVMALTLADPAALGHA 808

Query: 735 SGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKA-KCFQELFFNG 793
           S  +LL+  +    V  F L       +  + V + G V  + D + +    F  + F  
Sbjct: 809 SSPLLLLSRQPIPRVAPFALFFGPDRSSAVSCVPALGTVKFNDDSLIQGLAAFTLMIFKD 868

Query: 794 LFGKLFVKSKS 804
           +F K +  + S
Sbjct: 869 VFSKEYEATAS 879



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 148/453 (32%), Gaps = 147/453 (32%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P+ VV   Y  P+++ R++S ++A        C      I   L LEA T         
Sbjct: 1044 LPVDVVAMAYNFPAIIHRIDSNLVALDA-----CKMLGLDIRPDLALEAFTKDSDNTEER 1098

Query: 1068 -----TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
                         + ERLE LGD  LK A +  +F   P K E      R   VCN  L 
Sbjct: 1099 DAEQVNFQGGMGNNYERLEFLGDCFLKMATTISIFTLIPDKAEFDYHVERMLMVCNRNLF 1158

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
                + KL+ YIR  AFD R W   G L LR                            G
Sbjct: 1159 NNALNVKLEEYIRSMAFDRRSWYPEG-LVLRK---------------------------G 1190

Query: 1183 KPCDMGHRWM-GSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLV-----D 1236
            K  D+  + M   KTIAD  EALIGA Y        L   +    + DL V  V     D
Sbjct: 1191 KRKDITRQHMLADKTIADVCEALIGAAY--------LTAQEKDPNNFDLAVQAVTALVKD 1242

Query: 1237 DCITRASLRSYVP---------------RINEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281
               T  S R Y                 +++      +++GY F    LL+ A  H +  
Sbjct: 1243 KNHTMTSYRDYYAAYVKPDWQTAPANSTQLDMAARFHARMGYAFKHPRLLRSAFQHPTYP 1302

Query: 1282 EFY----CYQNL------------------------------------------------ 1289
              Y     YQ L                                                
Sbjct: 1303 SMYERLPSYQRLEFLGDALLDMASVEFLFHRFPGADPQWLTEHKMAMVSNQFLGCLAVEL 1362

Query: 1290 --YKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSM-----------------KAPKAL 1330
              ++ L +CS  L  +I EYV    +  ++     +                  + PK L
Sbjct: 1363 GFHRALTYCSPALQREIGEYVAEMEEALQSAREDAARHGRREDEYSRDYWVDCSRPPKCL 1422

Query: 1331 GDLLESIVGAVLIDTKLNLDEVWRIFKPILSPI 1363
             D +E+ VGAV +D++ +   V   F   + P 
Sbjct: 1423 PDTVEAYVGAVFVDSEYDFGRVRDFFARHVRPF 1455


>gi|308485595|ref|XP_003104996.1| CRE-DCR-1 protein [Caenorhabditis remanei]
 gi|308257317|gb|EFP01270.1| CRE-DCR-1 protein [Caenorhabditis remanei]
          Length = 1941

 Score =  229 bits (585), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 213/723 (29%), Positives = 343/723 (47%), Gaps = 86/723 (11%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFKKLIIFLA 100
           F PR YQ+++ + A ++NTI  L TG+GKT IAV+L+K+      A    G K+   F+ 
Sbjct: 11  FNPRDYQVELLDKASKKNTIVQLGTGSGKTFIAVLLLKEYGVQMFAPYGQGGKR-AFFIV 69

Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS-QCWQKEINKNDVLVMTPQILLDAL 159
             V+LV QQ   I VHT F+V + +G    + W S +   + + +N V+V+T Q LLD +
Sbjct: 70  EKVNLVEQQAKHIEVHTSFKVGQIHGMTSTELWKSPESCDEFMRQNHVVVITAQCLLDLI 129

Query: 160 RKAFLSLDIVCFIVIDECHHATGN-HPYTKIM---KEFYHKSDNKPKVFGMTASPVVRKG 215
             A++ L   C ++ DECHHA G+ HPY  IM   KE        P+V G+TAS ++++ 
Sbjct: 130 NHAYVKLQDTCVLIFDECHHALGSKHPYRLIMIKYKELKKAGHPVPRVLGLTAS-LIKEK 188

Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKES---CRFYDQSKFCGSDLKG 272
           V+     E Q+++LES LDS + T  D   +  +     E+   CR ++         + 
Sbjct: 189 VAPEKLTE-QLNKLESVLDSVIETASDLVTLSKYGAKPFEALVLCRDFETENLPLPHYET 247

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMD-DKHKTLRKQLSDYHAKILYCLDELGLICAY- 330
            + +          K        + D+D D  +++R  L    A     L +LG   A+ 
Sbjct: 248 IMALLLDT-----EKFVNHTTVFHPDLDLDPRRSIRDSLKTTKA----VLRQLGPWAAWK 298

Query: 331 -------EAVKICLEKVL--KAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLD 381
                  E  K+   ++L  KA     + + S    K  LE  +  + S   LAD     
Sbjct: 299 IAAMWEKELSKLTKSQILPDKALLFLNLAKTSMTTVKRLLEPEMRKVKS---LAD----- 350

Query: 382 FGFDYSKAVDLGYISTKLHELLQLF--------LSFGKSTQVLCIIFV-ERIIAAKV--- 429
                 K V   ++  +L E L++F        ++     ++  I+FV +R IA  +   
Sbjct: 351 ----LEKFVPQRFV--RLFESLEMFEPEFQMKRMNREVPEKLSAIVFVDQRYIAYALYVM 404

Query: 430 ---VERFVKKVPFLTHLTVAYLTGST--TSVDALTPKVQKEVLESFRGGKVNLLFATDVI 484
              V ++  K  F+    V   +G     S +    K Q E L  F   ++N+L AT V+
Sbjct: 405 IRNVRQWETKFKFVQSDYVVGASGQNLANSDNQGLHKRQTEALRRFHKNEINVLIATSVL 464

Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER-------GNLKQRNKL 537
           EEG+ V  C+ VI+FD P  + SY+QS+GRAR+  S++++M++         +LK   ++
Sbjct: 465 EEGVDVKQCNLVIKFDRPLDMRSYVQSKGRARKMGSRYVVMVDHKDVPSCDSDLKDFQQI 524

Query: 538 FDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEML 597
             I+ S     +     D     L    ++    Y+VESTGA +   +++ L++RYC  L
Sbjct: 525 EKILLSRHRTVNNPTEDDSIDFNLDDVDHL-MPPYVVESTGAELKLSNAIALVNRYCSKL 583

Query: 598 PSDKYYTPKPIFKYKSAEE----AYECELTLPSNAPFQ--TIVGPTSRNKNLSKQLVCLE 651
           PSD +    P  +    E+     Y  EL LP N+P +   I+     NK  ++  V LE
Sbjct: 584 PSDIFTRLVPHSRIIPVEDRGVTKYCAELLLPINSPIKHAIILKDPMPNKKAAQMAVALE 643

Query: 652 ACEKLHQVGALNDHLLPSVEEPSE---NNLISKKNESLPG----AGTTKRKELHGTTPIR 704
           AC +LH  G L+D+LLP   E       ++  + +E  PG     G++KRK+L+     R
Sbjct: 644 ACRQLHLKGELDDNLLPKGRESIAKLLEHIDDEPDEYAPGMALKVGSSKRKQLYDKKIAR 703

Query: 705 ALS 707
           AL+
Sbjct: 704 ALN 706



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 126/290 (43%), Gaps = 65/290 (22%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            L+L ALTT    +  S+ER E +GDS LK+A + +L+ T   +HEG+LS  RS  V N  
Sbjct: 1427 LLLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLQDQHEGKLSFARSKEVSNCN 1486

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAP----------------------------GQLS 1151
            L++LG    +   I  + FD    W+ P                            GQ +
Sbjct: 1487 LYRLGKKLGIPQLIVANKFDAHDSWLPPCYVPTCDFKAPNNSDAEEKDKEIERILNGQ-T 1545

Query: 1152 LRPVP---------------CECGVDTLEVPLDGKFFTQDTKVVVGKPCD-MGHRWMGSK 1195
            +   P                  G++T+  P   +   +D   +   P + +  + +  K
Sbjct: 1546 IEEKPEDKTGWDIGGDTAKSTADGIETINFPKQSRLLNEDISPL---PYNLLTQQNISDK 1602

Query: 1196 TIADCAEALIGAYYVGGGLIAALYMMKWLGI-----DADLEVS--LVDDCITRASLRSYV 1248
            +IAD  EALIG + +  G    L +M W+G+     DA  EV+  L+    T A+  + +
Sbjct: 1603 SIADAMEALIGVHLLTLGPNPTLKVMSWMGLKVIQKDAKTEVAHPLLRFIDTPANPDASL 1662

Query: 1249 PRIN------EIKDIESKIGYEFTVKFLLQEAITHASV---QEFYCYQNL 1289
              +N      +  ++E +IGY F  +  L +A THAS    +   CYQ L
Sbjct: 1663 KALNNLWQQYQFANLEERIGYRFKERAYLVQAFTHASYINNRVTGCYQRL 1712



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 5/121 (4%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELC 1381
            ++ PKALGD+ ES+ GA+ +D+  NLD  W++   ++   +       P  P+REL+EL 
Sbjct: 1814 VEVPKALGDVFESVAGAIYLDSGRNLDTTWQVLFHMMRSTIDSCCANPPRSPIRELMELE 1873

Query: 1382 DSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEK 1441
             S   F K    L+   V   + +   ++   G G  R+ + AK  AA + LK L   E+
Sbjct: 1874 ASKARFSKMERILESGKVRVTVDVG-NNMRFTGMG--RNYRIAKATAAKRALKYLHQMEE 1930

Query: 1442 R 1442
            +
Sbjct: 1931 Q 1931


>gi|408393408|gb|EKJ72672.1| hypothetical protein FPSE_07072 [Fusarium pseudograminearum CS3096]
          Length = 1510

 Score =  229 bits (585), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 194/695 (27%), Positives = 326/695 (46%), Gaps = 116/695 (16%)

Query: 41  SINFIPRIYQLKVFEVAKRRNTIAVLETG-----------------AGKTMIAVMLIKD- 82
           S +  PR YQ+++FE AK +N I VL TG                 +GKT+I+++L+K  
Sbjct: 66  STDITPREYQIELFEAAKEKNLIVVLPTGIFLSLYASTLDILIGTGSGKTLISILLLKHY 125

Query: 83  IAQAIKSNGF---KKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAK---------GV 130
           I   ++S      +K+  FL   V L  QQY  ++       ++ +G K         GV
Sbjct: 126 IRIEVESRALGNPRKVAFFLVEKVALCEQQYRFLK-------DQIFGHKTVMFTGDNRGV 178

Query: 131 DEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIM 190
            + D + W  +   N V+V T  ILLD L   F+++D +  ++ DE HHA   H Y +I+
Sbjct: 179 TK-DKKYWDDQFASNKVVVCTAHILLDCLNNGFITMDQINLLIFDEAHHAKKKHDYAQII 237

Query: 191 KEFYHKSDN--KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDK----- 243
           + +Y+ +D   +P++ GMTASPV     S A D      ELE TLDS++ T+ DK     
Sbjct: 238 RRYYYSTDKNKRPRILGMTASPVD----SKAGDVAELALELEKTLDSEIATLSDKMMRQA 293

Query: 244 TEMEVFVPSAKESCRFY-----DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKD 298
           T+ +V V   +E+ ++      D++K    D   KL     +F ASL   +         
Sbjct: 294 TDFQVHV---EETVKYSTLGIPDETKTQLWDSISKLVSRNKEFKASLDFTK--------- 341

Query: 299 MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL----EKVLKAQEECEIYRQSS 354
             +    L    +D + ++L  +D+  +    +  ++      EK+L   ++ E      
Sbjct: 342 --EASTILGPWCADRYWQVL--IDDTEIKRLADRTRMAFFGGGEKLLARGDQAE------ 391

Query: 355 LQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQ 414
                 + EV  V+ +          +FG    ++ +L      LHE+L    +   + +
Sbjct: 392 ----EAVREVQKVVAAH---------EFGTISPQSQELSAKVKCLHEILVHAFTIDNTKR 438

Query: 415 VLCIIFVERIIAAKVVERFVKKVPF-LTHLTVAYLTGSTTSVDAL---TPKVQKEVLESF 470
             CI+FV++   A ++     +V   +  +  +Y+ G  +S  AL   + + Q   L++F
Sbjct: 439 --CIVFVDQRHTACLLSDLYSQVSMAIPGMNASYMIGQQSSSSALGNMSLRKQCSTLKNF 496

Query: 471 RGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGN 530
           R G +N LFAT V EEG+ +P+C  VIRFDL  +V  Y+QS+GRAR  +S++I MLE GN
Sbjct: 497 RDGMINCLFATSVAEEGIDIPSCDLVIRFDLYTSVIQYVQSKGRARHESSRYITMLEDGN 556

Query: 531 LKQRNKLFDIIR-------------SERSVTDTALSRDPEACFLKACTYVKTKSYIVEST 577
           ++Q   L    R             ++R + D     + E    K    ++   Y +EST
Sbjct: 557 MRQIRSLKQAARDATALREFCLRIPADRKLQDDVFDEETE----KQIKEIRFNVYKIEST 612

Query: 578 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPT 637
           GA +T  SS+ ++ R+   L + +    K  +        +   + LPS++P  +  G  
Sbjct: 613 GAQLTFPSSLEILARFVASLGTAENSHSKAEYHVYKVGTYFTAAVNLPSSSPIVSQAGYP 672

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE 672
            R+K L+K     E C+KL     ++DHL P+ ++
Sbjct: 673 QRSKLLAKCSAAFEVCKKLINGKHIDDHLQPTFKK 707



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 161/442 (36%), Gaps = 135/442 (30%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +PI VV      P+++ R++S ++A        C   +  IP +L LEA+T         
Sbjct: 984  LPIDVVSMALKFPAIIHRIDSALIALDA-----CELFDLSIPPALALEAMTKDSDNTEDH 1038

Query: 1068 -----TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
                         + ERLE LGDS LK A +  +F+  PK +E      R   +CN+ L 
Sbjct: 1039 GKQQINFQAGMGSNYERLEFLGDSFLKMATTISIFVLKPKSNECLYHVERMLLICNNNLF 1098

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
                D KL  YIR  AFD R W     L+LR                GK F   T+    
Sbjct: 1099 NTAVDCKLPEYIRSLAFDRRTWYP--NLTLRK---------------GKAFKTTTR---- 1137

Query: 1183 KPCDMGHRWMGSKTIADCAEALIGAYYVGGG-------------LIAALY--MMKWLGID 1227
                   + +  K+IAD  EALIGA Y+                +  A Y  MM +    
Sbjct: 1138 -------QCLADKSIADVCEALIGAAYLSSKDDNLNMAVKAVSQMCKAKYHTMMAYDEYY 1190

Query: 1228 ADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ------ 1281
            A  +V         A+ R  V ++ +       IGY F    LLQ A TH S        
Sbjct: 1191 ASFKVPDWQKASPNANQRRLVQKVAD------AIGYHFKSAPLLQSAFTHPSYTYSGNVP 1244

Query: 1282 -----EF------------YCYQ------------------------------NLYKHLQ 1294
                 EF            Y Y+                              NL+ HL 
Sbjct: 1245 NYQRLEFLGDALIDMTIVEYLYRNFPLADPQWLTEHKMAMASNQFLGCLCVKLNLHHHLL 1304

Query: 1295 HCSTLLLSQITEYVKSFPKPGETT-----DSGPSMKA---------PKALGDLLESIVGA 1340
              ++  +S+I +YV       ET      + G  M+          PKA  D +E+++GA
Sbjct: 1305 FNTSQFISKIRDYVAELELAEETARQEAKEDGTPMRMDFWLNATTPPKAYADSIEALIGA 1364

Query: 1341 VLIDTKLNLDEVWRIFKPILSP 1362
            + +D++ +   V   F   + P
Sbjct: 1365 MFVDSEFDYSVVEDFFTKFIFP 1386


>gi|341893002|gb|EGT48937.1| CBN-DCR-1 protein [Caenorhabditis brenneri]
          Length = 1927

 Score =  229 bits (584), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 203/717 (28%), Positives = 340/717 (47%), Gaps = 75/717 (10%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           F PR YQ+++ + A ++NTI  L TG+GKT IAV+L+K+    + +  +   K   F+  
Sbjct: 11  FNPRDYQVELLDKASKKNTIVQLGTGSGKTFIAVLLLKEYGVQMFAPLDQGGKRAFFIVE 70

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW-QKEINKNDVLVMTPQILLDALR 160
            V+LV QQ   I VHT F+V + +G    + W S    +K + +N V+V+T Q LLD + 
Sbjct: 71  KVNLVEQQAKHIEVHTSFKVGQVHGQTSSELWKSPVACEKFMKENHVVVITAQCLLDFIN 130

Query: 161 KAFLSLDIVCFIVIDECHHATGN-HPYTKIM---KEFYHKSDNKPKVFGMTASPVVRKGV 216
            AF+ +   C ++ DECHHA G+ HPY  IM   KE     +  P+V G+TAS ++++ V
Sbjct: 131 HAFIKIQDTCVLIFDECHHALGSKHPYRLIMTKYKELKKAGEPVPRVLGLTAS-LIKEKV 189

Query: 217 SSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKES---CRFYDQSKFCGSDLKGK 273
           +     E Q+ +LES LDS + T  D   +  +     E+   CR ++  K    +    
Sbjct: 190 APEKLSE-QLVKLESVLDSVIETASDLVSLTKYGAKPYEAIVLCRDFETDKLGVPNYDKI 248

Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMD-DKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
           + + +        K        + D+D D     R+ L    +       +LG   A++ 
Sbjct: 249 MNLLYET-----DKFIRETTLFHPDLDMDPRSYAREALKATKS----VFQQLGPWAAWKI 299

Query: 333 VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVD- 391
            ++  + ++K     ++  +++L    FL      +     +  K  L+      K+++ 
Sbjct: 300 SQMFEKDLMKHINLQQLPEKATL----FLN-----LAKTTIITVKRLLEPEMRQIKSLNE 350

Query: 392 -LGYISTKLHELLQLFLSFG-----------KSTQVLCIIFV-ERIIA------AKVVER 432
              Y+  ++  L Q+F  F            K+  +  IIFV +R IA       + + +
Sbjct: 351 LERYVPHRIIRLFQVFEMFNPDFQKQRMALEKTEHLSAIIFVNQRYIAYSLHIMMRAIRQ 410

Query: 433 FVKKVPFLTHLTVAYLTGST--TSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
           +  K  FL    V   +G     S +    K Q + L  F  G +N+L AT V+EEG+ V
Sbjct: 411 WEPKFKFLNTDFVVGASGPNMANSNNQGLQKRQTDALRKFHRGDLNVLIATSVLEEGVDV 470

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER-------GNLKQRNKLFDIIRS 543
             C+ VI+FD P  + SY+QS+GRAR+  S++++++++        +LK   ++  I+ S
Sbjct: 471 KQCNVVIKFDRPTDMRSYVQSKGRARKAGSRYVVLVDQKDTSACDSDLKDFQQIEKILLS 530

Query: 544 ERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYY 603
                +     D           +    Y+VE TGA++   +++ L++RYC  LPSD + 
Sbjct: 531 RHRTVNNPTEDDSLTDLGDVDDLM--APYVVEKTGATIKMSNAIALVNRYCAKLPSDIFT 588

Query: 604 TPKPIFKYKSAEE----AYECELTLPSNAPFQ--TIVGPTSRNKNLSKQLVCLEACEKLH 657
              P       E+     Y  EL LP N+P +   I+     NK  ++  V LEAC +LH
Sbjct: 589 RLVPNSTIIPVEDHGVTKYCAELLLPINSPIKHAIILKDPMPNKKAAQMAVALEACRQLH 648

Query: 658 QVGALNDHLLPSVEEPSE---NNLISKKNESLPG----AGTTKRKELHGTTPIRALS 707
             G L+D+LLP   E        +  + +E  PG     G++KRK+L+     RAL+
Sbjct: 649 LKGELDDNLLPKGRESIAKLLEQMDDEPDEYAPGMAAKVGSSKRKQLYDKKIARALN 705



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 117/287 (40%), Gaps = 58/287 (20%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            L+L ALTT    +  S+ER E +GDS LK+A + +L+ T   +HEG+LS  RS  V N  
Sbjct: 1411 LLLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLQDQHEGKLSFARSKEVSNCN 1470

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVPCECGVDT------LEVPLDGK-- 1171
            L++LG    +   I  + FD    W+ P  +           D       +E  L+G+  
Sbjct: 1471 LYRLGKKLGIPQLIIANKFDAHDSWLPPCYIPTCNFKAPNTDDAEEKDIEMERLLNGETI 1530

Query: 1172 ----------------------------FFTQDTKVVVGKPCDMGHRWMGSKTIAD---- 1199
                                         F + T +V      + +  +  + I+D    
Sbjct: 1531 EEKPQNKTGWDMELKDEAKTTTEKIETITFPKRTALVNEDISPLPYNLLTQQNISDKSIA 1590

Query: 1200 -CAEALIGAYYVGGGLIAALYMMKWLGI-----DA--DLEVSLVDDCITRASLRSYVPRI 1251
               EALIG + +  G    L +M W+G+     DA  D+   L+    T  +  +   ++
Sbjct: 1591 DAMEALIGVHLLTLGPNPTLKVMSWMGLKVIQKDAVTDVAAPLLRFIDTPTNPNASTIQL 1650

Query: 1252 N------EIKDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
            +      +   +E KIGY F  +  L +A THAS        CYQ L
Sbjct: 1651 DNLWQQFQFAKLEEKIGYRFKERAYLVQAFTHASYSNNRVTGCYQRL 1697



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 5/129 (3%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELC 1381
            ++ PKALGD+ ES+ GA+ +D+  NLD  W++   ++   +       P  P+REL+EL 
Sbjct: 1799 VEVPKALGDVFESVAGAIYLDSGRNLDTTWQVLFHMMRSTIESCCANPPRSPIRELMELE 1858

Query: 1382 DSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEK 1441
             S   F K    L+   V   + +   ++   G G  R+ + AK  AA + L+ L + E 
Sbjct: 1859 SSKARFSKMERILETGKVRVTVDVG-NNMRFTGMG--RNYRIAKATAAKRALRYLHMIEV 1915

Query: 1442 RISKGASNT 1450
            +  +  S++
Sbjct: 1916 QRRQSPSDS 1924



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 21/164 (12%)

Query: 903  DAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 958
            D +N KD VV+  +        Y + EI+ +    S F    D +  TF  YF +KY + 
Sbjct: 870  DPENYKDAVVMPWYRNMEQPAFYYVAEILTDLRPSSQF---PDHNFTTFNEYFIKKYNLE 926

Query: 959  LIHPGQPLLRLKQSHNPHNLLV--------------NFNDGGGSGKGSKSGMNTKKPQMH 1004
            +    Q LL +  + N  NLL+                +        S+S  +   P   
Sbjct: 927  IYDQEQSLLDVDFTSNRLNLLLPRIQSQARRARSFSGSSTSSAPPTPSESRESGPHPSQR 986

Query: 1005 VHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
              + PEL+    +  ++   +  LPS+  R+  L+L+ +LRE I
Sbjct: 987  QILIPELMDVHPISATLWNVIAALPSIFYRINQLLLSDELRETI 1030


>gi|328696732|ref|XP_001945890.2| PREDICTED: endoribonuclease dcr-1-like isoform 1 [Acyrthosiphon
           pisum]
          Length = 1691

 Score =  229 bits (584), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 179/664 (26%), Positives = 330/664 (49%), Gaps = 51/664 (7%)

Query: 32  VDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS-- 89
           +D P   T+ I  +PR YQL++ E  K+ NTI  L TG+GKT IA ML+K +   +    
Sbjct: 1   MDQPPKDTSEI--VPRKYQLELLEDCKKANTILYLPTGSGKTYIATMLVKSMGDCLTKPI 58

Query: 90  NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLV 149
              KK   F+  +V LV QQ   +R H  + +  + G   VD W  Q W + + K  +LV
Sbjct: 59  GQGKKWTFFIVQSVPLVSQQAGNLRRHLPWNIGTFSGDMNVDFWSQQQWNEILEKCHILV 118

Query: 150 MTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH---KSDNKPKVFGM 206
           MT QI L+ LR  ++ +     ++ DECHHA   HP+ +IM+  +    K+D +P++ G+
Sbjct: 119 MTAQIYLNNLRHGYMHIKDANLLIFDECHHAVALHPFKQIMQVLHDTDLKTDERPRILGL 178

Query: 207 TASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFC 266
           TA+ +     ++  + + ++++L+ T ++ + T  D   +++F    KE  R YD+  + 
Sbjct: 179 TATLI----NANTKNVKEELTKLQITFNATIKTRYDDN-IQIFSARPKEFIRLYDE--YI 231

Query: 267 GSDLKGKLEVSWSKFDASLSKLQGS-QLNCYKDMDDKH-----KTLRKQLSDYHAKILYC 320
             D    +    +    +L K+Q   ++   K+ ++ +     K   K  ++Y   I   
Sbjct: 232 LDDEIKAIVKRLNTNTCNLRKIQAPMKIEPIKENNETYYLEYQKQASKNFANYFLDIEAN 291

Query: 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
           L + G   AY      + ++ K ++ C   ++ +         ++ ++ S L +  K+  
Sbjct: 292 LVDGGAYIAYLVTWHFMVEIEKKRKICTDAKRLT---------IMSLVLSELTITRKMLY 342

Query: 381 DFGFDY-----SKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435
           D+   +       +  L   S KL +L+++ LS  K T   C++FV+R   AK++  ++K
Sbjct: 343 DYMNKHLIIHKGHSTKLHNTSPKLKKLIEI-LSSIKLTDT-CLVFVDRRTTAKILYHYIK 400

Query: 436 -------KVPFLTHLTVAYLTGSTTSVDALTPKVQK--EVLESFRGGKVNLLFATDVIEE 486
                  +V  +    V      +     +  K Q+  ++++ F    +N+L  ++V+EE
Sbjct: 401 DYIEEFNQVNIVCEFIVGARGIFSPDCKEMVYKKQQNNDIIKKFNDNVINVLITSEVLEE 460

Query: 487 GMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS 546
           G+ +  C+YVIR+D PK   SYIQS+GRAR  +S+FILM+    LK +    +  + E  
Sbjct: 461 GVDIQTCNYVIRYDSPKNFPSYIQSKGRARSTDSKFILMVP-NQLKFQKTQTEYNKMEEE 519

Query: 547 VTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPK 606
           +    +  D +           T+ +  E+  A +T + ++++I+RYC  LP D++    
Sbjct: 520 IVKLLVDNDIDDENNDEKM---TEVFHTETDRALLTHEIAISIINRYCYSLPQDRFTDLS 576

Query: 607 P-IFKYKSAEEAYECELTLPSNAPFQT-IVGPTSRNKNLSKQLVCLEACEKLHQVGALND 664
           P  +  ++   + + +L LP N+  +T I G    NK  +K+     AC  L+++GAL++
Sbjct: 577 PEWYMAQNHNMSKKYKLKLPINSVIKTPIDGLFCTNKKNAKKSAAFNACIALYKIGALDE 636

Query: 665 HLLP 668
           +L+P
Sbjct: 637 NLMP 640



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 141/338 (41%), Gaps = 76/338 (22%)

Query: 1048 INCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQ 1107
            I    +N     S IL+ +T     + F+ ER+E  GDS LK+AVS  LF  +P  +EG 
Sbjct: 1184 IEVSKQNIGPKQSDILKVITPPFANDMFNYERMETYGDSFLKFAVSLVLFDAFPSDNEGV 1243

Query: 1108 LSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRR-WVAP---GQLSLRPVPCECGVDT 1163
            L+  +   V N  L  +G +  L  Y+  + FDP   W+ P     + L+ +  E    +
Sbjct: 1244 LTELKMKLVGNRNLLYVGRNLNLGSYLVVNVFDPNMDWIPPCFGVPIKLKEIIEEGNFQS 1303

Query: 1164 -----LEVPLDGK---FFTQDTKVVV----------------------GKPCDMGH---- 1189
                 + +P D +     + +T + +                      G P  +GH    
Sbjct: 1304 DVLHQITIPRDNQTTGILSDETWIEIETELLKFKRLSDMPISDSDEEDGIP-QIGHSQSD 1362

Query: 1190 -----RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASL 1244
                 + +  K +ADC E+LIG Y    G+     +++ LGI            I +  +
Sbjct: 1363 LFLHKQSVSDKMVADCVESLIGTYVYKRGVEVGFKVLQGLGI------------IPKQFI 1410

Query: 1245 RSYVPR-INEIKD-------------IESKIGYEFTVKFLLQEAITHASVQEFYCYQNLY 1290
             ++ P+ I+++ D             +E +IGY F  K LL +A+TH + Q  + +   Y
Sbjct: 1411 DTFKPKPIDDLYDGLDFSKILPGYELLERRIGYSFKHKHLLAQALTHPTYQ--FGFSECY 1468

Query: 1291 KHLQHCSTLLLS-QITEYVKS---FPKPGETTDSGPSM 1324
            + L+     +L   IT Y+        PGE TD   S+
Sbjct: 1469 QRLEFLGDAILDFLITTYIIEHCYHKTPGEITDIRSSL 1506



 Score = 40.4 bits (93), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 23/180 (12%)

Query: 1253 EIKDIESKIGYEFTVKFL-----LQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQITEY 1307
            EI DI S +    T   L     L   I   SVQ        Y+H Q  +  +  ++   
Sbjct: 1498 EITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQEVLYL 1557

Query: 1308 VKSFPKPGETTD--SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT 1365
            +       E +D  +  S+  PK LGDL ES++ A+ +D   +L+ VW I    L   + 
Sbjct: 1558 I-------EESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIK 1610

Query: 1366 P--DKLELPPLRELIELCDSLGYFVKENCTLK------GEMVHAELRLQLKDVLLVGEGQ 1417
               D +   P+R L E       F K + + K      G M+  E+ L  K + + G GQ
Sbjct: 1611 EFCDNVPKNPIRILHE-TKLQPNFSKPDASDKAADKGLGTMMRLEIMLNNKIMRIYGFGQ 1669


>gi|328696730|ref|XP_003240109.1| PREDICTED: endoribonuclease dcr-1-like isoform 2 [Acyrthosiphon
           pisum]
          Length = 1648

 Score =  229 bits (583), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 179/664 (26%), Positives = 330/664 (49%), Gaps = 51/664 (7%)

Query: 32  VDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS-- 89
           +D P   T+ I  +PR YQL++ E  K+ NTI  L TG+GKT IA ML+K +   +    
Sbjct: 1   MDQPPKDTSEI--VPRKYQLELLEDCKKANTILYLPTGSGKTYIATMLVKSMGDCLTKPI 58

Query: 90  NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLV 149
              KK   F+  +V LV QQ   +R H  + +  + G   VD W  Q W + + K  +LV
Sbjct: 59  GQGKKWTFFIVQSVPLVSQQAGNLRRHLPWNIGTFSGDMNVDFWSQQQWNEILEKCHILV 118

Query: 150 MTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH---KSDNKPKVFGM 206
           MT QI L+ LR  ++ +     ++ DECHHA   HP+ +IM+  +    K+D +P++ G+
Sbjct: 119 MTAQIYLNNLRHGYMHIKDANLLIFDECHHAVALHPFKQIMQVLHDTDLKTDERPRILGL 178

Query: 207 TASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFC 266
           TA+ +     ++  + + ++++L+ T ++ + T  D   +++F    KE  R YD+  + 
Sbjct: 179 TATLI----NANTKNVKEELTKLQITFNATIKTRYDDN-IQIFSARPKEFIRLYDE--YI 231

Query: 267 GSDLKGKLEVSWSKFDASLSKLQGS-QLNCYKDMDDKH-----KTLRKQLSDYHAKILYC 320
             D    +    +    +L K+Q   ++   K+ ++ +     K   K  ++Y   I   
Sbjct: 232 LDDEIKAIVKRLNTNTCNLRKIQAPMKIEPIKENNETYYLEYQKQASKNFANYFLDIEAN 291

Query: 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
           L + G   AY      + ++ K ++ C   ++ +         ++ ++ S L +  K+  
Sbjct: 292 LVDGGAYIAYLVTWHFMVEIEKKRKICTDAKRLT---------IMSLVLSELTITRKMLY 342

Query: 381 DFGFDY-----SKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435
           D+   +       +  L   S KL +L+++ LS  K T   C++FV+R   AK++  ++K
Sbjct: 343 DYMNKHLIIHKGHSTKLHNTSPKLKKLIEI-LSSIKLTDT-CLVFVDRRTTAKILYHYIK 400

Query: 436 -------KVPFLTHLTVAYLTGSTTSVDALTPKVQK--EVLESFRGGKVNLLFATDVIEE 486
                  +V  +    V      +     +  K Q+  ++++ F    +N+L  ++V+EE
Sbjct: 401 DYIEEFNQVNIVCEFIVGARGIFSPDCKEMVYKKQQNNDIIKKFNDNVINVLITSEVLEE 460

Query: 487 GMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS 546
           G+ +  C+YVIR+D PK   SYIQS+GRAR  +S+FILM+    LK +    +  + E  
Sbjct: 461 GVDIQTCNYVIRYDSPKNFPSYIQSKGRARSTDSKFILMVP-NQLKFQKTQTEYNKMEEE 519

Query: 547 VTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPK 606
           +    +  D +           T+ +  E+  A +T + ++++I+RYC  LP D++    
Sbjct: 520 IVKLLVDNDIDDENNDEKM---TEVFHTETDRALLTHEIAISIINRYCYSLPQDRFTDLS 576

Query: 607 P-IFKYKSAEEAYECELTLPSNAPFQT-IVGPTSRNKNLSKQLVCLEACEKLHQVGALND 664
           P  +  ++   + + +L LP N+  +T I G    NK  +K+     AC  L+++GAL++
Sbjct: 577 PEWYMAQNHNMSKKYKLKLPINSVIKTPIDGLFCTNKKNAKKSAAFNACIALYKIGALDE 636

Query: 665 HLLP 668
           +L+P
Sbjct: 637 NLMP 640



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 141/338 (41%), Gaps = 76/338 (22%)

Query: 1048 INCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQ 1107
            I    +N     S IL+ +T     + F+ ER+E  GDS LK+AVS  LF  +P  +EG 
Sbjct: 1141 IEVSKQNIGPKQSDILKVITPPFANDMFNYERMETYGDSFLKFAVSLVLFDAFPSDNEGV 1200

Query: 1108 LSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRR-WVAP---GQLSLRPVPCECGVDT 1163
            L+  +   V N  L  +G +  L  Y+  + FDP   W+ P     + L+ +  E    +
Sbjct: 1201 LTELKMKLVGNRNLLYVGRNLNLGSYLVVNVFDPNMDWIPPCFGVPIKLKEIIEEGNFQS 1260

Query: 1164 -----LEVPLDGK---FFTQDTKVVV----------------------GKPCDMGH---- 1189
                 + +P D +     + +T + +                      G P  +GH    
Sbjct: 1261 DVLHQITIPRDNQTTGILSDETWIEIETELLKFKRLSDMPISDSDEEDGIP-QIGHSQSD 1319

Query: 1190 -----RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASL 1244
                 + +  K +ADC E+LIG Y    G+     +++ LGI            I +  +
Sbjct: 1320 LFLHKQSVSDKMVADCVESLIGTYVYKRGVEVGFKVLQGLGI------------IPKQFI 1367

Query: 1245 RSYVPR-INEIKD-------------IESKIGYEFTVKFLLQEAITHASVQEFYCYQNLY 1290
             ++ P+ I+++ D             +E +IGY F  K LL +A+TH + Q  + +   Y
Sbjct: 1368 DTFKPKPIDDLYDGLDFSKILPGYELLERRIGYSFKHKHLLAQALTHPTYQ--FGFSECY 1425

Query: 1291 KHLQHCSTLLLS-QITEYVKS---FPKPGETTDSGPSM 1324
            + L+     +L   IT Y+        PGE TD   S+
Sbjct: 1426 QRLEFLGDAILDFLITTYIIEHCYHKTPGEITDIRSSL 1463



 Score = 40.4 bits (93), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 23/180 (12%)

Query: 1253 EIKDIESKIGYEFTVKFL-----LQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQITEY 1307
            EI DI S +    T   L     L   I   SVQ        Y+H Q  +  +  ++   
Sbjct: 1455 EITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQEVLYL 1514

Query: 1308 VKSFPKPGETTD--SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT 1365
            +       E +D  +  S+  PK LGDL ES++ A+ +D   +L+ VW I    L   + 
Sbjct: 1515 I-------EESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIK 1567

Query: 1366 P--DKLELPPLRELIELCDSLGYFVKENCTLK------GEMVHAELRLQLKDVLLVGEGQ 1417
               D +   P+R L E       F K + + K      G M+  E+ L  K + + G GQ
Sbjct: 1568 EFCDNVPKNPIRILHE-TKLQPNFSKPDASDKAADKGLGTMMRLEIMLNNKIMRIYGFGQ 1626


>gi|328696734|ref|XP_003240110.1| PREDICTED: endoribonuclease dcr-1-like isoform 3 [Acyrthosiphon
           pisum]
          Length = 1630

 Score =  228 bits (582), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 179/664 (26%), Positives = 330/664 (49%), Gaps = 51/664 (7%)

Query: 32  VDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS-- 89
           +D P   T+ I  +PR YQL++ E  K+ NTI  L TG+GKT IA ML+K +   +    
Sbjct: 1   MDQPPKDTSEI--VPRKYQLELLEDCKKANTILYLPTGSGKTYIATMLVKSMGDCLTKPI 58

Query: 90  NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLV 149
              KK   F+  +V LV QQ   +R H  + +  + G   VD W  Q W + + K  +LV
Sbjct: 59  GQGKKWTFFIVQSVPLVSQQAGNLRRHLPWNIGTFSGDMNVDFWSQQQWNEILEKCHILV 118

Query: 150 MTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH---KSDNKPKVFGM 206
           MT QI L+ LR  ++ +     ++ DECHHA   HP+ +IM+  +    K+D +P++ G+
Sbjct: 119 MTAQIYLNNLRHGYMHIKDANLLIFDECHHAVALHPFKQIMQVLHDTDLKTDERPRILGL 178

Query: 207 TASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFC 266
           TA+ +     ++  + + ++++L+ T ++ + T  D   +++F    KE  R YD+  + 
Sbjct: 179 TATLI----NANTKNVKEELTKLQITFNATIKTRYDDN-IQIFSARPKEFIRLYDE--YI 231

Query: 267 GSDLKGKLEVSWSKFDASLSKLQGS-QLNCYKDMDDKH-----KTLRKQLSDYHAKILYC 320
             D    +    +    +L K+Q   ++   K+ ++ +     K   K  ++Y   I   
Sbjct: 232 LDDEIKAIVKRLNTNTCNLRKIQAPMKIEPIKENNETYYLEYQKQASKNFANYFLDIEAN 291

Query: 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
           L + G   AY      + ++ K ++ C   ++ +         ++ ++ S L +  K+  
Sbjct: 292 LVDGGAYIAYLVTWHFMVEIEKKRKICTDAKRLT---------IMSLVLSELTITRKMLY 342

Query: 381 DFGFDY-----SKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435
           D+   +       +  L   S KL +L+++ LS  K T   C++FV+R   AK++  ++K
Sbjct: 343 DYMNKHLIIHKGHSTKLHNTSPKLKKLIEI-LSSIKLTDT-CLVFVDRRTTAKILYHYIK 400

Query: 436 -------KVPFLTHLTVAYLTGSTTSVDALTPKVQK--EVLESFRGGKVNLLFATDVIEE 486
                  +V  +    V      +     +  K Q+  ++++ F    +N+L  ++V+EE
Sbjct: 401 DYIEEFNQVNIVCEFIVGARGIFSPDCKEMVYKKQQNNDIIKKFNDNVINVLITSEVLEE 460

Query: 487 GMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS 546
           G+ +  C+YVIR+D PK   SYIQS+GRAR  +S+FILM+    LK +    +  + E  
Sbjct: 461 GVDIQTCNYVIRYDSPKNFPSYIQSKGRARSTDSKFILMVP-NQLKFQKTQTEYNKMEEE 519

Query: 547 VTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPK 606
           +    +  D +           T+ +  E+  A +T + ++++I+RYC  LP D++    
Sbjct: 520 IVKLLVDNDIDDENNDEKM---TEVFHTETDRALLTHEIAISIINRYCYSLPQDRFTDLS 576

Query: 607 P-IFKYKSAEEAYECELTLPSNAPFQT-IVGPTSRNKNLSKQLVCLEACEKLHQVGALND 664
           P  +  ++   + + +L LP N+  +T I G    NK  +K+     AC  L+++GAL++
Sbjct: 577 PEWYMAQNHNMSKKYKLKLPINSVIKTPIDGLFCTNKKNAKKSAAFNACIALYKIGALDE 636

Query: 665 HLLP 668
           +L+P
Sbjct: 637 NLMP 640



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 141/338 (41%), Gaps = 76/338 (22%)

Query: 1048 INCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQ 1107
            I    +N     S IL+ +T     + F+ ER+E  GDS LK+AVS  LF  +P  +EG 
Sbjct: 1123 IEVSKQNIGPKQSDILKVITPPFANDMFNYERMETYGDSFLKFAVSLVLFDAFPSDNEGV 1182

Query: 1108 LSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRR-WVAP---GQLSLRPVPCECGVDT 1163
            L+  +   V N  L  +G +  L  Y+  + FDP   W+ P     + L+ +  E    +
Sbjct: 1183 LTELKMKLVGNRNLLYVGRNLNLGSYLVVNVFDPNMDWIPPCFGVPIKLKEIIEEGNFQS 1242

Query: 1164 -----LEVPLDGK---FFTQDTKVVV----------------------GKPCDMGH---- 1189
                 + +P D +     + +T + +                      G P  +GH    
Sbjct: 1243 DVLHQITIPRDNQTTGILSDETWIEIETELLKFKRLSDMPISDSDEEDGIP-QIGHSQSD 1301

Query: 1190 -----RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASL 1244
                 + +  K +ADC E+LIG Y    G+     +++ LGI            I +  +
Sbjct: 1302 LFLHKQSVSDKMVADCVESLIGTYVYKRGVEVGFKVLQGLGI------------IPKQFI 1349

Query: 1245 RSYVPR-INEIKD-------------IESKIGYEFTVKFLLQEAITHASVQEFYCYQNLY 1290
             ++ P+ I+++ D             +E +IGY F  K LL +A+TH + Q  + +   Y
Sbjct: 1350 DTFKPKPIDDLYDGLDFSKILPGYELLERRIGYSFKHKHLLAQALTHPTYQ--FGFSECY 1407

Query: 1291 KHLQHCSTLLLS-QITEYVKS---FPKPGETTDSGPSM 1324
            + L+     +L   IT Y+        PGE TD   S+
Sbjct: 1408 QRLEFLGDAILDFLITTYIIEHCYHKTPGEITDIRSSL 1445



 Score = 40.4 bits (93), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 23/180 (12%)

Query: 1253 EIKDIESKIGYEFTVKFL-----LQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQITEY 1307
            EI DI S +    T   L     L   I   SVQ        Y+H Q  +  +  ++   
Sbjct: 1437 EITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQEVLYL 1496

Query: 1308 VKSFPKPGETTD--SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT 1365
            +       E +D  +  S+  PK LGDL ES++ A+ +D   +L+ VW I    L   + 
Sbjct: 1497 I-------EESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIK 1549

Query: 1366 P--DKLELPPLRELIELCDSLGYFVKENCTLK------GEMVHAELRLQLKDVLLVGEGQ 1417
               D +   P+R L E       F K + + K      G M+  E+ L  K + + G GQ
Sbjct: 1550 EFCDNVPKNPIRILHE-TKLQPNFSKPDASDKAADKGLGTMMRLEIMLNNKIMRIYGFGQ 1608


>gi|46132992|ref|XP_389201.1| hypothetical protein FG09025.1 [Gibberella zeae PH-1]
          Length = 1495

 Score =  228 bits (580), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 191/680 (28%), Positives = 329/680 (48%), Gaps = 88/680 (12%)

Query: 34  GPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETG--AGKTMIAVMLIKD-IAQAIKSN 90
           GP +   S +  PR YQ+++FE AK +N I VL TG  +GKT+I+++L+K  I   ++S 
Sbjct: 60  GPFAEA-STDITPREYQIELFEAAKEKNLIVVLPTGTGSGKTLISILLLKYYIRIEVESR 118

Query: 91  GF---KKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYG-AKGVDEWDSQCWQKEINKN 145
                +K+  FL   V L  QQY  ++       +  + G  +GV + D + W  + + N
Sbjct: 119 ALGNPRKVAFFLVEKVALCEQQYRFLKDQIFGHNIVMFTGDNRGVTK-DKKYWDDQFSSN 177

Query: 146 DVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN--KPKV 203
            V+V T  ILLD L   F+++D +  ++ DE HHA   H Y +I++ +Y+ ++   +P++
Sbjct: 178 KVVVCTAHILLDCLNNGFITMDQINLLIFDEAHHAKKKHDYAQIVRRYYYSTEKNKRPRI 237

Query: 204 FGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDK-----TEMEVFVPSAKESCR 258
            GMTASPV     S A D      ELE TLDS++ T+ DK     T+ +V V   +E+ +
Sbjct: 238 LGMTASPVD----SKAGDVAELALELEKTLDSEIATLSDKMMRQATDFQVHV---EETVK 290

Query: 259 FY-----DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDY 313
           +      D++K    D   KL     +F ASL   +           +    L    +D 
Sbjct: 291 YNTLGLPDETKTQLWDSISKLVSRNKEFKASLDFTK-----------EASTILGPWCADR 339

Query: 314 HAKILYCLDELGLICAYEAVKICL----EKVLKAQEECEIYRQSSLQCKYFLEEVLHVIG 369
           + ++L  +D+  +    +  ++      EK+L   ++ E            + EV  V+ 
Sbjct: 340 YWQVL--IDDTEIKRLADRTRMAFFGGGEKLLARGDQAE----------EAVREVQKVVA 387

Query: 370 SALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKV 429
           +          +F     ++ +L      LHE+L    +F       CI+FV++   A +
Sbjct: 388 AH---------EFRAISPQSQELSAKVKCLHEIL--VHAFTVDNTKRCIVFVDQRHTACL 436

Query: 430 VERFVKKVPF-LTHLTVAYLTG---STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE 485
           +     +V   +  +  +Y+ G   S++++  ++ + Q   L++FR G +N LFAT V E
Sbjct: 437 LSDLYDQVSMAIPGMNASYMIGQQSSSSTLGNMSLRKQCSTLKNFRDGVINCLFATSVAE 496

Query: 486 EGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIR--- 542
           EG+ +P+C  VIRFDL  +V  Y+QS+GRAR  +S++I MLE GN++Q   L    R   
Sbjct: 497 EGIDIPSCDLVIRFDLYTSVIQYVQSKGRARHESSRYITMLEDGNMRQIRSLKQAARDAT 556

Query: 543 ----------SERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 592
                     ++R + D     + E+        ++   Y +ESTGA +T  SS+ ++ R
Sbjct: 557 ALREFCLRIPADRKLQDDVFDEETES----QIKQIRFNVYKIESTGAQLTFPSSLEILAR 612

Query: 593 YCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEA 652
           +   L + +    K  +        +   + LPS++P  +  G   R+K L+K     E 
Sbjct: 613 FVASLGTAESSHSKAEYHVYKVGTYFTAAVNLPSSSPIVSQTGYPQRSKLLAKCSAAFEV 672

Query: 653 CEKLHQVGALNDHLLPSVEE 672
           C+KL     ++DHL P+ ++
Sbjct: 673 CKKLINGKHIDDHLQPTFKK 692



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 159/442 (35%), Gaps = 135/442 (30%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +PI VV      P+++ R++S ++A        C   +  IP +L LEA+T         
Sbjct: 969  LPIDVVSMALKFPAIIHRIDSALIALDA-----CELFDLSIPPALALEAMTKDSDNTEDH 1023

Query: 1068 -----TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
                         + ERLE LGDS LK A +  +F+  PK +E      R   +CN+ L 
Sbjct: 1024 GKQQINFQAGMGSNYERLEFLGDSFLKMATTISIFVLKPKSNECLYHVERMLLICNNNLF 1083

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
                D KL  YIR  AFD R W     L+LR                GK F    +    
Sbjct: 1084 NTAVDCKLPEYIRSLAFDRRTWYP--DLTLRK---------------GKAFKATAR---- 1122

Query: 1183 KPCDMGHRWMGSKTIADCAEALIGAYYVGGG-------------LIAALY--MMKWLGID 1227
                   + +  K+IAD  EALIGA Y+                +  A Y  MM +    
Sbjct: 1123 -------QRLADKSIADVCEALIGAAYLSSKDDNLNMAVKAVSQMCKAKYHTMMAYDEYY 1175

Query: 1228 ADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ------ 1281
            A  +V         A+ R  V ++ +        GY F    LLQ A TH S        
Sbjct: 1176 ASFKVPDWQKASPNANQRRLVQKVAD------ATGYHFKSAPLLQSAFTHPSYAYSGNVP 1229

Query: 1282 -----EF------------YCYQ------------------------------NLYKHLQ 1294
                 EF            Y Y+                              NL+ HL 
Sbjct: 1230 NYQRLEFLGDALIDMTIVEYLYRNFPLADPQWLTEHKMAMASNQFLGCLCVKLNLHHHLL 1289

Query: 1295 HCSTLLLSQITEYVKSFPKPGETT-----DSGPSMKA---------PKALGDLLESIVGA 1340
              ++  +S+I +YV       ET      + G  M+          PKA  D +E+++GA
Sbjct: 1290 FNTSQFISKIRDYVAELELAEETARQEAEEDGTPMRMDFWLNATTPPKAYADSIEALMGA 1349

Query: 1341 VLIDTKLNLDEVWRIFKPILSP 1362
            + +D++ +   V   F   + P
Sbjct: 1350 MFVDSEFDYSVVEDFFTKFIFP 1371


>gi|238499727|ref|XP_002381098.1| Dicer-like protein [Aspergillus flavus NRRL3357]
 gi|220692851|gb|EED49197.1| Dicer-like protein [Aspergillus flavus NRRL3357]
          Length = 694

 Score =  227 bits (579), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 176/584 (30%), Positives = 284/584 (48%), Gaps = 57/584 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFK-KLIIFLAP 101
           PR YQ+++FE AK +NTIAVL+TG+GKT+IAV+L+K I Q     ++NG   ++  FL  
Sbjct: 104 PREYQVELFERAKSQNTIAVLDTGSGKTLIAVLLLKHIIQNELIDRANGKPPRISFFLVD 163

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V L  QQ  V+R + D  V +++GA G D W  Q W  +   N V+V T +IL   L  
Sbjct: 164 SVTLAFQQAAVLRNNLDQNVVQFFGAMGTDLWSKQTWDHQFENNMVIVCTAEILNQCLLN 223

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSA 219
           +++ +D +  ++ DE HH   +HPY +I++E Y K+D   +P++FGMTASP+  KG    
Sbjct: 224 SYIRMDQINLLIFDEAHHTKKDHPYARIIRESYLKADPTKRPRIFGMTASPIDTKG---- 279

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
            D     ++LE  LDS++ T      +   V    E    YD           KL+  ++
Sbjct: 280 -DIIESATKLEVLLDSKIATTSKPNLLREVVRRPIEESWEYD-----------KLDPPFA 327

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339
                 +KL       + D+       R  L            ELG  CA  A    L  
Sbjct: 328 ------TKLYQILQARFGDISSLQPVFRFTLQ--------ASSELGPCCADRAWAYALAD 373

Query: 340 VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKL 399
            +  + E  + + +        +  L  I S +  A  I  +  F+       G +S K+
Sbjct: 374 DVLPKLEGNVRKLAQSISSPIPQCALREI-SRIQEASDIVKNHSFNSPNFP--GELSPKV 430

Query: 400 HELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVK--KVPFLT-HLTVAYLTGSTTSV 455
             L Q L   F   T+  CI+F ++   AK++       ++P+L   + +   +G    +
Sbjct: 431 QLLRQKLIKYFEHPTETKCIVFTQKRYTAKMLFDLFSTLEIPYLRPGVLIGVRSGDIVGM 490

Query: 456 DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
           + ++ + Q   L  FR G++N LFAT V EEG+ +P+C+ VIRFDL  T+  Y+QSRGRA
Sbjct: 491 N-VSFRQQFLALVKFRSGEINCLFATSVAEEGLDIPDCNLVIRFDLYNTLIQYVQSRGRA 549

Query: 516 RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTY--------- 566
           R  +S +  M+ER N     +L ++  +E+ +  +     PE   L              
Sbjct: 550 RHSSSTYASMIERYNADHAARLVEVREAEK-LMQSFCETLPEDRILHGIDSEIDSILQDE 608

Query: 567 VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK 610
            + +++I+ +TGA +T  S++ ++ RY   L    YY    +F+
Sbjct: 609 EEKRTFIIRATGAKLTYHSALAILARYASSL---SYYRKSRLFE 649


>gi|336470988|gb|EGO59149.1| hypothetical protein NEUTE1DRAFT_60268 [Neurospora tetrasperma FGSC
           2508]
 gi|350292065|gb|EGZ73260.1| hypothetical protein NEUTE2DRAFT_107618 [Neurospora tetrasperma
           FGSC 2509]
          Length = 1583

 Score =  227 bits (579), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 183/655 (27%), Positives = 327/655 (49%), Gaps = 76/655 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA---IKSNGF-KKLIIFLAP 101
           PR YQ+++FE AK++NTIAVL+TG+GKT+IA ML++ +       +  G  +++  FL  
Sbjct: 121 PREYQVELFERAKQQNTIAVLDTGSGKTLIAAMLLRWVINGELEDREKGLPRRIAFFLVD 180

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYG--AKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            V LV QQ+  +  + DF +E+  G   +GV+      W++ + +N+V+V T +IL  AL
Sbjct: 181 KVALVFQQHSFLTKNLDFPMEKLCGEMVEGVES--KAFWKEALEQNEVVVCTAEILSTAL 238

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKSDNKPKVFGMTASPVVRKGVS 217
             +++ +D +  ++ DE HH   +HPY +I+K FY   + + +P++ G+TASP     V 
Sbjct: 239 HHSWIRMDQINLLIFDEAHHTKKDHPYARIIKNFYIDEQLERRPRILGLTASP-----VD 293

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
           + +D     +ELE+ L SQ+ T  D        P+A +      +++     ++G+ + S
Sbjct: 294 AKVDPRRAAAELEALLHSQIATAAD--------PAALQHTICKPKTELIVEYVRGRPD-S 344

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA--YEAVKI 335
            +  +  L KL G Q           +  +K L+   +       +LG  CA  Y  +  
Sbjct: 345 ETVLNKQLRKLVGGQ-----------ELFKKPLNFTTS----AASKLGTWCADRYWQLFF 389

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
             E ++K +   E      L     L+E+       +  A ++     F    A+D   +
Sbjct: 390 KQEDIVKLESRTE----RDLMKVAALDEITEKHVKQVREAHELVNAHTFS-PAALDPTML 444

Query: 396 STKLHELLQLF---LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL-TVA---YL 448
           S+K+  L+++       G   Q  CIIFV +   A ++   +++    +H+ ++A    +
Sbjct: 445 SSKVIMLVRILRDQFERGVGAQ-RCIIFVRQRNTAMLLADLLQQPEIKSHIPSIAAEVLV 503

Query: 449 TGSTTSVDALTPKV----QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
            G TT    +  K+    Q  ++  F+ G++N LFAT V EEG+ +P+C+ VIRFDL  T
Sbjct: 504 GGGTTGSSYVNAKINFQQQNRIIRKFKLGEINCLFATSVAEEGLDIPDCNIVIRFDLYDT 563

Query: 505 VSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF------DIIR-------SERSVTDTA 551
           +   IQSRGRAR+ +S++I M+E+GN +  +++       D++R        +R +T   
Sbjct: 564 LIQCIQSRGRARRPDSRYIQMIEKGNYEHHSRILRAKGAEDVLRKFCEALPEDRKLTGNH 623

Query: 552 LSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKY 611
           ++ D    +L      K + Y V  TGA ++   S+  +  +   LP     +  P +  
Sbjct: 624 MNLD----YLLRKEKGK-RQYTVPDTGAKLSYMQSLVCLANFTATLPHPPETSLSPEYYI 678

Query: 612 KSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL 666
            +    ++CE+ +P  +P ++ VG    +K ++K     E C  L + G L++HL
Sbjct: 679 TTVPGGFQCEVVMPDASPIKSAVGKVHLSKGVAKCAAAFELCLALLKAGHLDNHL 733



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 84/213 (39%), Gaps = 52/213 (24%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P  VV  L   PS++ R+ES ++A        C      +   L LEA T         
Sbjct: 1028 IPADVVAMLLCFPSIIHRVESNLVALD-----ACKLLGLDLRPDLALEAFTKDSDNSDEH 1082

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G  +++  ERLE LGDS LK A +  ++   P K E +    R   +CN  
Sbjct: 1083 DAEKENYQTGMGDNY--ERLEFLGDSFLKMATTIAIYTLIPDKGEFEYHVERMLLICNKN 1140

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L     +  L+ YIR  +F+ R+W   G +  +                           
Sbjct: 1141 LFNNALEIGLEEYIRSMSFNRRQWYPEGLILKK--------------------------- 1173

Query: 1181 VGKPCDMGHRW-MGSKTIADCAEALIGAYYVGG 1212
             GK  D   R  +  K+IAD  EALIGA Y+ G
Sbjct: 1174 -GKSKDARQRHVLADKSIADVCEALIGAAYLTG 1205


>gi|195023643|ref|XP_001985724.1| GH20958 [Drosophila grimshawi]
 gi|193901724|gb|EDW00591.1| GH20958 [Drosophila grimshawi]
          Length = 1713

 Score =  227 bits (578), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 192/677 (28%), Positives = 313/677 (46%), Gaps = 76/677 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ----AIKSNGFKKLIIFLAPT 102
           R YQL++ E   +RN I  L TG+GKT +A++ +K  +Q    +I+  G + L  FL  T
Sbjct: 4   RDYQLRIVEYIAKRNGIIYLPTGSGKTYVAILALKRFSQNFDKSIEEGGQRAL--FLCNT 61

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V L  QQ   +R +T+F+V  Y G  GVD W    W  EI  N VLV T Q++LD   + 
Sbjct: 62  VELARQQAVFVRRYTNFKVGFYVGEVGVDNWVRSKWTDEIRDNQVLVGTAQVILDMALQK 121

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK---PKVFGMTASPVVRKGVSSA 219
            L L  V  +++DECHH TG+HPY + M+ F     N    P+V G+T   V+ KG +  
Sbjct: 122 HLDLKSVSIVILDECHHGTGHHPYHEFMRLFQMAQANATPLPRVVGLTG--VLIKG-NEI 178

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
            +   ++ ELEST    + T+ D  EME V + S K       +     +D     EV  
Sbjct: 179 KNVAKKLKELESTYLGNIVTVSDMKEMENVMLHSTKPR-----EYLVAYNDRNQTFEVIE 233

Query: 279 SKFDASLSKLQ--------------GSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDEL 324
                 LS L+                 L+  +D  +K   ++  L+D+    LY LD  
Sbjct: 234 EIRSLILSYLKSLDLITIPNQPVRMSKGLHVQRD-SNKKSVIKLMLNDF----LYQLDNY 288

Query: 325 GLICAYEAVKICLEK--VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
           G+     A+     +  + + Q E  + R +        + + H++ + L   D+   D 
Sbjct: 289 GIYAGSIAILSMYAEFDIKRRQSETIVMRNTYRLVVGLCDRIRHMLVNQLTDDDE---DE 345

Query: 383 GFDYSKAVDLGYISTKLHELLQLF---LSFGKSTQVLCIIFVERIIAAKVVE----RFVK 435
               ++ V + + + K+   LQ      +      + C++FVER    K +     +++ 
Sbjct: 346 KAANTEEVIMNFSTPKVQRFLQYLKDTFANKNPKDICCLVFVERRYTCKCIYGLLLKYIA 405

Query: 436 KVPFLTH-LTVAYLTGSTTSV----DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
            VP L + L   ++ G           L  +  +  ++ FR G+ N++  + V+EEG+ V
Sbjct: 406 AVPELRNVLAPQFMVGRNGIFLDFESVLERRWLRSAIQQFRDGEANMMVCSSVLEEGIDV 465

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGN-------LKQRNKLFDIIRS 543
             C+YV+  D  KT + Y+Q++GRAR  ++ F+L     N       ++Q  +    IR 
Sbjct: 466 QACNYVMILDPIKTFNMYVQTKGRARAKDASFVLFSSELNKPKISLQIQQYRQAHVEIRE 525

Query: 544 ERSVTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKY 602
              + D  L R DP+   ++     + K Y V   GA +   S++ LIHRY + +P+D +
Sbjct: 526 --YLKDRVLERSDPKMDEIREHFQDQIKPY-VNQNGAVLLASSALMLIHRYVQQMPTDAF 582

Query: 603 YTPKPIFKY----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLE 651
            T  P FK           ++++  Y   L LP N+  + TI      N + +K     +
Sbjct: 583 GTVLPWFKLLDPNERRELTQNSQGKYVVSLNLPLNSALRDTIYSDPMPNGHWAKISAAFK 642

Query: 652 ACEKLHQVGALNDHLLP 668
           AC KLH++G LN+  LP
Sbjct: 643 ACIKLHELGELNERFLP 659



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 121/308 (39%), Gaps = 50/308 (16%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T  G  + F MER ELLGD  LK + + +L   YPK +EG L+  +S  V N  L
Sbjct: 1184 FLAAITYAGSVDVFDMERFELLGDCFLKLSATLYLASKYPKWNEGTLTQVKSTLVSNRNL 1243

Query: 1122 HKLGTDRKLQGYIRDSAFDPRR-WVAP----------------------GQLSLRPVPC- 1157
                 D  +   I  + F P+  W+ P                      G  +LR +   
Sbjct: 1244 LYCIRDTDIPSRICFTLFTPKYFWLPPCLSLPQNVQQLWQQHPDKAALVGPHNLRNLTMS 1303

Query: 1158 --------ECGVDTLEVPLDGKFFTQDTK---VVVGKPCD--MGHRWMGSKTIADCAEAL 1204
                    +C   T    LD     Q T    +      D  +G   M +K +AD  EAL
Sbjct: 1304 EEEVFGNGKCAESTYNSFLDSCRANQQTHNAGMDFSSEVDFCVGQVKMPNKVLADTLEAL 1363

Query: 1205 IGAYYVGGGLIAALYMMKWLGI-DADLE---VSLVDDCITRASLRSYVPR--INEI---- 1254
            +G      GL     M+++ GI   D+      L+D  +    LR+ + +  ++E     
Sbjct: 1364 LGVIIKNYGLQHGFRMLEYFGICKPDIGKPLTQLLDLQLGSTQLRTNITKREVDEFLINH 1423

Query: 1255 KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNLYKHLQHCSTLLLSQITEYVKSF 1311
              +E  +GY F  +  L +A+TH S        CYQ L          L+S      K+ 
Sbjct: 1424 SALEHNLGYTFRDRAYLLQALTHPSNPTNRLTGCYQELEFVGDAILDFLISAYIFEHKTR 1483

Query: 1312 PKPGETTD 1319
              PG+ TD
Sbjct: 1484 MTPGQLTD 1491



 Score = 41.2 bits (95), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 6/131 (4%)

Query: 1312 PKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLEL 1371
            P+ GE   S  ++  PK LGD+LE+++ A+ +D + +L+  W++   +  P +      +
Sbjct: 1586 PEVGEYNIST-NVDVPKTLGDVLEALIAAIYLDCR-DLNTTWQVVYKLFEPELLEFSRNV 1643

Query: 1372 P--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAA 1429
            P  P+R+L +   +   +          MV  +     K + + G G   + K AK  AA
Sbjct: 1644 PLNPIRQLNDHKSAKPIYSAPVTDKNQVMVTCQFICMEKTIKVYGFGS--NGKQAKLSAA 1701

Query: 1430 SQLLKKLEVCE 1440
               L+K+  CE
Sbjct: 1702 KHALQKIAKCE 1712


>gi|353227266|emb|CCA77779.1| hypothetical protein PIIN_03414 [Piriformospora indica DSM 11827]
          Length = 1418

 Score =  227 bits (578), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 192/663 (28%), Positives = 303/663 (45%), Gaps = 87/663 (13%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQ ++   A+ +N I   +TG GKT+I+ M+                 +FL P V LV
Sbjct: 13  RLYQEELARHARDQNAIIAADTGTGKTLISAMVA----------------LFLVPKVPLV 56

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            QQ   +  +T F+V  Y GA GVD WD   W KE    D+LVMTPQI L+ LR A  S+
Sbjct: 57  DQQRAFLEENTPFKVRGYSGAMGVDYWDKTAWTKEFMGVDILVMTPQIFLNILRHAHWSI 116

Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN---KPKVFGMTASPVV--RKGVSSAMD 221
           D V  IV DE H+  G  P   IM E YH   N   +PK+ G+TASP+   +K V++   
Sbjct: 117 DRVSIIVFDEIHNCKGKSPEALIMMEHYHTIPNGLPRPKILGLTASPIFNPKKPVAA--- 173

Query: 222 CEGQISELESTLDSQVFTIEDKTE-----------MEVFVPSAKESCRFYDQSKFCGSDL 270
               ++E+E   D +V+ ++  TE           M V  P        Y          
Sbjct: 174 ----LAEIEKLTDCKVYVVKAHTEDLAKHTFQAEDMIVDYPPTPSIFPRYPVVSLWVELT 229

Query: 271 KGKLEVSWSKFDA----SLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGL 326
             +L   ++ F      ++S  +G     +  +++++ T RK L  + A +   +    +
Sbjct: 230 MTRLLPDFTLFPGKPKDTMSGNRGGP--WFTTLENRYNTTRKALGPFGADLFVYVH---V 284

Query: 327 ICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY-FLEEVLHVIGSALPLADKIFLDFGFD 385
             A E +K  L  +   + + +  ++S L   Y  L +  H + ++  L  + +L     
Sbjct: 285 FTALETIKKDLLPIFTDRPDPDAEKRSHLDDLYEILAKHEHRLLTSHELLSEEWLS---- 340

Query: 386 YSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFV-ERIIAAKVVERF-------VKKV 437
             K + L  +  K             ST    IIF  ER IA  +   F       V+  
Sbjct: 341 -PKLLRLRELLLK-----------QDSTSFRGIIFTYERQIATTLSLMFPRLGIPGVRAG 388

Query: 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
           P + H   A        +  +  K Q +V+  FR G +NL+ AT V EEG+  P CS+V 
Sbjct: 389 PIVGHGLHACSVPEILGMKGMPFKTQDKVVADFRMGGLNLIIATSVAEEGLDFPLCSFVC 448

Query: 498 RFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSE---RSVTDTALSR 554
           RFD P+T+  YIQSRGRAR   S F++MLE G  K+R  +  +   E   +++  + + R
Sbjct: 449 RFDPPRTLPQYIQSRGRARMAGSTFVIMLEEGPSKERETVEALQVGEIRAKTMYGSNMDR 508

Query: 555 DPEACFLKACTYVKT---KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKY-YTPKPIFK 610
           + +   L   T         +IVE TGAS+T   S++L++  C ++P D +  + +P+  
Sbjct: 509 EDDEVELDENTPKDDGLEGRFIVEKTGASLTPAGSISLLNNLCSLIPRDDHTRSLQPV-- 566

Query: 611 YKSAEEAYECELTLPSNAPFQT-----IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDH 665
           Y++    +     LP   P        +  P  R K  +K+    +A  +L+++G  +D 
Sbjct: 567 YETDPVTFRTTNRLPPALPIPREDLLFVSDPFCRTKKAAKRNAAFKAVLRLYELGVFDDF 626

Query: 666 LLP 668
           LLP
Sbjct: 627 LLP 629



 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 123/457 (26%), Positives = 184/457 (40%), Gaps = 117/457 (25%)

Query: 1009 PELLVRVDV--PISVVKSLYLLPSVMQRLESL-----MLASQLREEINCHSRNFHIPS-- 1059
            P +L   DV  P SV + L L    ++   SL     +L+S  R  +  HSR   +P   
Sbjct: 870  PGILSDTDVFIPQSVCQWLNLDEDRLRWFSSLPPLFHLLSSVYRARL-LHSR-LGVPELD 927

Query: 1060 -SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118
                +EALT    C SF+ +RLE LGDS LK A + H+   +P KHEGQL++ R  +VCN
Sbjct: 928  LDRTIEALTIPQACASFNNQRLETLGDSFLKVATTIHVLNKFPHKHEGQLTSLRQNSVCN 987

Query: 1119 STLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTK 1178
              L   G  + L  ++        RW                      P+  K+    + 
Sbjct: 988  RYLLGRGHAQNLVSFMNIEPNSQSRWRI-------------------TPVSTKYINSRSF 1028

Query: 1179 VVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDC 1238
            V          R +  +++ DC EAL+G  ++ GG  A L +   LG+     V   +  
Sbjct: 1029 V---------ERVIPRRSVQDCMEALLGVAWLSGGDKAGLRVGTRLGLCFGGTVPWAERY 1079

Query: 1239 ----ITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITH-------ASVQE----- 1282
                +  +S   + P       +E  +GY F  K LL EA+TH       AS Q      
Sbjct: 1080 PKVELAFSSSSPFPP-------LEENLGYTFKDKSLLVEALTHPSFVSGSASYQRLEFLG 1132

Query: 1283 ------------FYCYQN-----LYKHLQHC---STL--------------------LLS 1302
                        F+ Y N     L +    C   STL                    L++
Sbjct: 1133 DAVLDLVTVEHFFHLYPNATSGKLTRARARCVCNSTLSALGTKKLEIHKAMFCDAISLVA 1192

Query: 1303 QITEYVKSFPKPG--ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNL----DEVWRIF 1356
               +  + F      +  D+   + APKALGD++E+++GAV +D+  N     D V R+F
Sbjct: 1193 AANKTARMFNSMDFTQVIDNIWRLDAPKALGDMVEALIGAVFVDSGWNYNIVKDVVIRLF 1252

Query: 1357 KPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCT 1393
            K +L   + PD + L P  E       + +  K  CT
Sbjct: 1253 KEVLD-YIHPD-MPLDPTSEF------MIWVAKHGCT 1281


>gi|85105148|ref|XP_961898.1| hypothetical protein NCU08270 [Neurospora crassa OR74A]
 gi|74616659|sp|Q7S8J7.1|DCL1_NEUCR RecName: Full=Dicer-like protein 1; Includes: RecName:
           Full=Endoribonuclease dcl-1; Includes: RecName:
           Full=ATP-dependent helicase dcl-1
 gi|28923482|gb|EAA32662.1| predicted protein [Neurospora crassa OR74A]
          Length = 1584

 Score =  227 bits (578), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 183/655 (27%), Positives = 327/655 (49%), Gaps = 76/655 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA---IKSNGF-KKLIIFLAP 101
           PR YQ+++FE AK++NTIAVL+TG+GKT+IA ML++ +       +  G  +++  FL  
Sbjct: 122 PREYQVELFERAKQQNTIAVLDTGSGKTLIAAMLLRWVITGELEDREKGLPRRIAFFLVD 181

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYG--AKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            V LV QQ+  +  + DF +E+  G   +GV+      W++ + +N+V+V T +IL  AL
Sbjct: 182 KVALVFQQHSFLTKNLDFPMEKLCGEMVEGVES--KAFWKEALEQNEVVVCTAEILSTAL 239

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKSDNKPKVFGMTASPVVRKGVS 217
             +++ +D +  ++ DE HH   +HPY +I+K FY   + + +P++ G+TASP     V 
Sbjct: 240 HHSWIRMDQINLLIFDEAHHTKKDHPYARIIKNFYIDEQLERRPRILGLTASP-----VD 294

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
           + +D     +ELE+ L SQ+ T  D        P+A +      +++     ++G+ + S
Sbjct: 295 AKVDPRRAAAELEALLHSQIATAAD--------PAALQHTICKPKTELVVEYVRGRPD-S 345

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA--YEAVKI 335
            +  +  L KL G Q           +  +K L+   +       +LG  CA  Y  +  
Sbjct: 346 ETVLNKQLRKLVGGQ-----------ELFKKPLNFTTS----AASKLGTWCADRYWQLFF 390

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
             E ++K +   E      L     L+E+       +  A ++     F    A+D   +
Sbjct: 391 KQEDIVKLESRTE----RDLMKVAALDEITEKHVKQVREAHELVNAHTFS-PAALDPTML 445

Query: 396 STKLHELLQLF---LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL-TVA---YL 448
           S+K+  L+++       G   Q  CIIFV +   A ++   +++    +H+ ++A    +
Sbjct: 446 SSKVIMLVRILRDQFERGVGAQ-RCIIFVRQRNTAMLLADLLQQPEIKSHIPSIAAEVLV 504

Query: 449 TGSTTSVDALTPKV----QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
            G TT    +  K+    Q  ++  F+ G++N LFAT V EEG+ +P+C+ VIRFDL  T
Sbjct: 505 GGGTTGSSYVNAKINFQQQNRIIRKFKLGEINCLFATSVAEEGLDIPDCNIVIRFDLYDT 564

Query: 505 VSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF------DIIR-------SERSVTDTA 551
           +   IQSRGRAR+ +S++I M+E+GN +  +++       D++R        +R +T   
Sbjct: 565 LIQCIQSRGRARRPDSRYIQMIEKGNYEHHSRILRAKGAEDVLRKFCEALPEDRKLTGNH 624

Query: 552 LSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKY 611
           ++ D    +L      K + Y V  TGA ++   S+  +  +   LP     +  P +  
Sbjct: 625 MNLD----YLLRKEKGK-RQYTVPDTGAKLSYMQSLVCLANFTATLPHPPETSLSPEYYI 679

Query: 612 KSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL 666
            +    ++CE+ +P  +P ++ VG    +K ++K     E C  L + G L++HL
Sbjct: 680 TTVPGGFQCEVVMPDASPIKSAVGKVHLSKGVAKCAAAFELCLALLKAGHLDNHL 734



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 123/325 (37%), Gaps = 64/325 (19%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P  VV  L   PS++ R+ES ++A        C      +   L LEA T         
Sbjct: 1029 IPADVVAMLLCFPSIIHRVESNLVALD-----ACKLLGLDLRPDLALEAFTKDSDNSDEH 1083

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G  +++  ERLE LGDS LK A +  ++   P K E +    R   +CN  
Sbjct: 1084 DAEKENFQTGMGDNY--ERLEFLGDSFLKMATTIAIYTLIPDKGEFEYHVERMLLICNKN 1141

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L     +  L+ YIR  +F+ R+W   G +  +                           
Sbjct: 1142 LFNNALEIGLEEYIRSMSFNRRQWYPEGLILKK--------------------------- 1174

Query: 1181 VGKPCDMGHRW-MGSKTIADCAEALIGAYYVGG----------GLIAALYMMKWLGIDAD 1229
             GK  D   R  +  K+IAD  EALIGA Y+ G            + A+   K   + + 
Sbjct: 1175 -GKSKDARQRHVLADKSIADVCEALIGAAYLTGQEKGSFDMAIKAVTAMVKDKKHRMISY 1233

Query: 1230 LEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNL 1289
             +   V    T  +  +   + +  K    ++GY+F    LL+ A  H +    Y     
Sbjct: 1234 GDYYAVYQKPTWQTESANSAQRDMAKKFSERMGYKFKHPRLLRAAFQHPTYPSLYERLPS 1293

Query: 1290 YKHLQHCSTLLLSQIT-EYV-KSFP 1312
            Y+ L+     L   +  +Y+ + FP
Sbjct: 1294 YQRLEFLGDALFDMVAVDYLFRKFP 1318


>gi|195124758|ref|XP_002006854.1| GI21295 [Drosophila mojavensis]
 gi|193911922|gb|EDW10789.1| GI21295 [Drosophila mojavensis]
          Length = 1728

 Score =  226 bits (575), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 191/681 (28%), Positives = 325/681 (47%), Gaps = 78/681 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ----AIKSNGFKKLIIFLAPT 102
           R YQL++ E   +RN I  L TG+GKT +A++ +K  +Q    +I+  G + L  F+  T
Sbjct: 13  RSYQLRLVEYIVKRNGIIYLPTGSGKTYVAILALKRFSQNMDKSIEEGGQRAL--FICNT 70

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V L  QQ   +R  T+F+V  Y G +G D W    W +EI+ + VLV T Q++L+ + + 
Sbjct: 71  VELARQQAICVRKLTNFKVGYYVGEQGTDNWKKNKWDEEIHNHQVLVGTAQVILNLISEN 130

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVSS 218
           ++SL  V   ++DECHH TG HPY + MK    + ++     P++ G+T   V+ KG + 
Sbjct: 131 YMSLTSVSIAILDECHHGTGKHPYHEFMKLVQMQMESGIKKLPRIVGLTG--VLIKG-NE 187

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEME-VFVPSAK--ESCRFY-DQSKFCGSDLKGKL 274
             +   ++ ELE+T    + T+ D  E+E V + S K  ES   Y  + +  G   + + 
Sbjct: 188 IKEVAKRLKELETTYCGNIITVSDTKELENVMLHSTKPRESIMTYKSEVQTFGKIEEIRQ 247

Query: 275 EVSWSKFDASLSKLQGSQLNCYKDMD-----DKHKTLRKQLSDYHAKILYCLDELGLICA 329
            +    +   L  +    +   K M      +K   ++ Q++D+    LY LD  G+   
Sbjct: 248 RIRNYFYTLELQDIGHQPVRMSKGMRIQREPNKKSAIKLQINDF----LYQLDNYGIYAG 303

Query: 330 YEA-VKICLE-KVLKAQEEC----EIYRQSSLQCKYFLEEVLHVIGSAL-PLADKIFLDF 382
             A V + +E ++ + Q E      +YR +   C    E V H++ S L  + D   +  
Sbjct: 304 SIAIVSLIVEFEIKRRQAETLSLRNMYRSAITLC----ESVRHMLVSKLRDMLDDDQMSD 359

Query: 383 GFDYSKAVDLGYISTKLHELLQLFLSFGKST-------QVLCIIFVERIIAAKVVE---- 431
               ++ V + + + K    +QLFL + K T        + C++FVER    K +     
Sbjct: 360 DMINTEEVIMNFSTPK----VQLFLQYLKQTFANKQPKDICCLVFVERRYTCKCIYGLLL 415

Query: 432 RFVKKVPFLTHLTVAYL----TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEG 487
            ++   P L ++         +G     D L  +  K  ++ FR G+ N++  + V+EEG
Sbjct: 416 NYIAATPELRNVLFPQFMVGRSGIFHDFDKLERRWLKSAIQEFRDGEANIMICSSVLEEG 475

Query: 488 MHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS- 546
           + V  C+YVI  D  KT + Y+Q++GRAR   + F+++    +L+++     I++  ++ 
Sbjct: 476 IDVQACNYVIILDPIKTFNMYVQTKGRARSKEASFMII--SSDLEKQKTSTQILQYRKAH 533

Query: 547 ------VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPS 599
                 + D  L R DP+   +          +I   +GA +   S++ L+HRYC+ +PS
Sbjct: 534 ADIGEYLKDRVLERADPQLNDINEHFQDDIPPFI-NGSGAVLLASSALALVHRYCQHMPS 592

Query: 600 DKYYTPKPIFKYKSAEE----------AYECELTLPSNAPF-QTIVGPTSRNKNLSKQLV 648
           D +    P FK    EE           Y   LTLP N+   +TI         L+K   
Sbjct: 593 DAFGIVLPWFKLLEQEERKAFTKDWAQKYVVSLTLPLNSALRETIYSDAMPYTRLAKISA 652

Query: 649 CLEACEKLHQVGALNDHLLPS 669
             + C KL+Q+G LN+  LP+
Sbjct: 653 AFKTCVKLYQMGELNERFLPT 673



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 120/309 (38%), Gaps = 54/309 (17%)

Query: 1063 LEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
            L A+T  G  + F MER ELLGD  LK + + +L   YP  +EG L+  +S  V N  L 
Sbjct: 1202 LAAITYAGSVDVFDMERFELLGDCFLKLSATLYLANRYPDWNEGILTQVKSTLVSNRNLL 1261

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCEC------GVDTLEVPLDGKFFTQD 1176
               ++  +   I  + F P+    P  +SL P   +       GV  L  P + +  +  
Sbjct: 1262 YCLSETDIPQRICSTLFTPKYSWLPPSVSL-PQNVKALWKENPGVAALVGPHNLRNLSIS 1320

Query: 1177 TKVVVG-------------KPCD-------------------MGHRWMGSKTIADCAEAL 1204
             + + G               C                    +G   M  K IAD  EA+
Sbjct: 1321 EEELFGDGNCGKQSFINFVNGCQANQQSHHAGLDYSSEINFCLGQVQMPDKLIADTLEAI 1380

Query: 1205 IGAYYVGGGLIAALYMMKWLGI----DADLEVSLVDDCITRASLRSYVPR-------INE 1253
            +G      GL     M+++ GI    +      L+D  +  + +R+ + +       IN 
Sbjct: 1381 LGVVVKNYGLHHGFRMLEYFGICKPDNGKPLTQLLDLQLGGSRMRTNISQHEVDGFLINH 1440

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNLYKHLQHCSTLLLSQITEYVKS 1310
             + +E  +GY F  +  L +A+TH S        CYQ L          L+S      K+
Sbjct: 1441 -QYLEKNLGYTFCDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEHKT 1499

Query: 1311 FPKPGETTD 1319
               PG+ TD
Sbjct: 1500 RMTPGQLTD 1508



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 1312 PKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLEL 1371
            PK GE   S  ++  PKALGD+LE+++ AV +D + +L+  W++   +  P +      +
Sbjct: 1601 PKVGEFNISH-NVDVPKALGDVLEALIAAVYLDCR-DLNTTWQVVYKLFEPELLEFSRNV 1658

Query: 1372 P--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAA 1429
            P  P+R+L E   +   F          MV  +     K + + G G   + K AK  AA
Sbjct: 1659 PLNPIRQLFEHKLAKPTFSSPVMDNNQVMVTCQFICMDKTIKVYGFGN--NGKQAKLSAA 1716

Query: 1430 SQLLKKLEVCE 1440
               L+KL  CE
Sbjct: 1717 KHALQKLAKCE 1727


>gi|408399323|gb|EKJ78431.1| hypothetical protein FPSE_01388 [Fusarium pseudograminearum CS3096]
          Length = 1860

 Score =  225 bits (574), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 317/681 (46%), Gaps = 79/681 (11%)

Query: 20   PPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVML 79
            P D+ +    H +   +S    I   PR YQ+++FE AKR NTI VL TG+GKT+IA +L
Sbjct: 415  PDDLRNQSVSHLI--TASENRMIITTPREYQIELFERAKRENTIVVLPTGSGKTLIAALL 472

Query: 80   IKD-IAQAIKSNGF---KKLIIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYG-AKGVDEW 133
            ++  + Q ++       K++  F+   V L  QQ+ V+  +   + V +++G   G    
Sbjct: 473  LRHCLEQELEDRAAGKPKRVAFFVVEKVALCFQQFAVLNCNLGAYPVTKFWGKMSGTKTK 532

Query: 134  DSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193
            D   W K+ + N  +V T QILLD L   F+++  +  +V DE HHA   HPY +I+K  
Sbjct: 533  DY--WNKQFSDNMAIVCTAQILLDCLNSNFINMSQINLLVFDEVHHAKKEHPYARIIKNH 590

Query: 194  Y-HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKT-------E 245
            Y H   +KP++ GMTASPV     +   D EG   E+E+ L S++ T+            
Sbjct: 591  YVHHEGDKPRILGMTASPV----DAQTKDFEGTAVEIETFLCSKIATVSGDVLANSMDLR 646

Query: 246  MEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKT 305
             ++   +  ++ RF ++SK    +L     +  + F ASL           +  ++   T
Sbjct: 647  KQLQEKAYYDALRFPEESKTALRELIVGQILHNALFKASL-----------EFTEEASST 695

Query: 306  LRKQLSDYHAKILYCLDELGLICAYEAVKICLE-KVLKAQEECEIYRQSSLQCKYFLEEV 364
            L    +D +  +L   DE   + A    +       +KA    +  R+     K     V
Sbjct: 696  LGSWCADRYWHLLITEDETMQLAAKTDREFAKSFASIKADGATDAVRRVRDIVK---NNV 752

Query: 365  LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI 424
            L ++  + P                  L     KLHE+L    +F  + +  CI+FVE+ 
Sbjct: 753  LGIVRPSSP-----------------GLSVKVKKLHEILLNAFTFNGTKR--CIVFVEKR 793

Query: 425  IAAKVVERFVKKVPF-LTHLTVAYLTG---STTSVDALTPKVQKEVLESFRGGKVNLLFA 480
              A ++    ++    +  +  +Y+ G   S +++  ++ + Q   L+ F+ G VN LFA
Sbjct: 794  YTACLLSDLYQQPEMGIRGMNASYMIGRQSSISNIGGMSFRDQVITLQRFKRGDVNCLFA 853

Query: 481  TDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDI 540
            T V EEG+ +P+C  V+RFDL  +V  Y+QSRGRARQ  S++I MLE GN KQ   L   
Sbjct: 854  TPVAEEGIDIPDCDLVVRFDLFNSVIQYLQSRGRARQQRSKYITMLEHGNSKQIRSLKQA 913

Query: 541  IR-------------SERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSV 587
             R             S+R + D ++  DP        T    K Y++ STGA +T   S+
Sbjct: 914  ERDAASLEKFIMSLPSDRKLQDESM--DPVTATQNELT--TQKVYVMPSTGARLTFSISL 969

Query: 588  NLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQL 647
             ++ ++   L S      +  F        +  ++ LP ++P +++ G   R+K L+K  
Sbjct: 970  GVLAKFTSSLSSSDNGNLE--FVVSKQGPTFIADVILPDSSPLRSMSGIPQRSKALAKCS 1027

Query: 648  VCLEACEKLHQVGALNDHLLP 668
               EAC  L     +++H  P
Sbjct: 1028 AAFEACVLLIDKKYIDEHFQP 1048



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 163/451 (36%), Gaps = 148/451 (32%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCC---- 1072
            +PI VV      P+++ R+ES+++A        C S +  IP +L L+ALT  G      
Sbjct: 1334 IPIDVVFMTMTFPAIINRIESILIALDA-----CASLDLTIPPALALQALTKDGGGTGDL 1388

Query: 1073 ----ESF------SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
                 +F      + ERLE LGDS LK A +  LF   P+ +E    A R   +CN  L 
Sbjct: 1389 DVKQSNFQPGMGDNYERLEFLGDSFLKMATTISLFTLIPESNECGYHAERVLLICNQNLF 1448

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
              G +  L  YIR  +FD R W                    ++PL     T+ T     
Sbjct: 1449 NHGVEHNLHQYIRSKSFDRRAWYP------------------DLPLKKGKVTKTT----- 1485

Query: 1183 KPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRA 1242
                M H  +  KTIAD  EA          LI A Y+    G + D+ V  V   +   
Sbjct: 1486 ----MTHD-LADKTIADVCEA----------LIGAAYLSGEEG-NMDMGVKAVTRMVKSK 1529

Query: 1243 S-----LRSY-----VPRINEIK---------DIESKI-GYEFTVKFLLQEAITHAS--- 1279
            +      R Y     VP  +  K         D  +K+ GY F    LLQ    H S   
Sbjct: 1530 NHEMEFFRDYFAAFKVPPWHTAKSTTLQRRLVDCVAKVTGYRFNSSALLQSVFKHPSWPY 1589

Query: 1280 --------------------VQEFY----------------------------CYQ-NLY 1290
                                V +F                             C Q NL+
Sbjct: 1590 EAVPDYQRLEFLGDALLDMVVVDFLYKRFKLADPQWLTEHKMAMVSNQFLGCLCVQLNLH 1649

Query: 1291 KHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKA----------------PKALGDLL 1334
            KHL   ++ L  QI+EYV       E  D+    KA                PK L D+ 
Sbjct: 1650 KHLLFTTSSLTGQISEYVAELELAKE--DAHKVAKANRTPTRMDFWLHASLPPKVLADVA 1707

Query: 1335 ESIVGAVLIDTKLNLDEVWRIFKPILSPIVT 1365
            E+++GA+ +D K N   V + F   + P  T
Sbjct: 1708 EALIGAMFVDAKYNYSVVNQFFTRFVEPYFT 1738


>gi|226497706|ref|NP_001145700.1| uncharacterized protein LOC100279204 [Zea mays]
 gi|219884081|gb|ACL52415.1| unknown [Zea mays]
          Length = 270

 Score =  225 bits (573), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/269 (44%), Positives = 170/269 (63%), Gaps = 17/269 (6%)

Query: 168 IVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQIS 227
           +V  ++ DECHHATGNHPYT+IMKEFYH S++KP VFGMTASP++RKGVSS +DC+ Q+S
Sbjct: 1   MVSLMIFDECHHATGNHPYTRIMKEFYHGSEHKPNVFGMTASPIIRKGVSSDLDCKNQLS 60

Query: 228 ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSK 287
           ELE+ LDS++ ++ D+ E+E+ VPSAKE  R+Y+       DL  +LE+  SK+D  + +
Sbjct: 61  ELENILDSKIHSVVDREEIELCVPSAKEVNRYYEPRTVSFDDLSEELEILCSKYDGLIIQ 120

Query: 288 LQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLK----- 342
           L     N YKD D+  K  RK+LS+  AKI YCL++ GL+CA EA KIC+E+  +     
Sbjct: 121 LHNRSTNQYKDADEITKESRKRLSNSLAKICYCLEDAGLLCASEATKICIERGQRKGWLK 180

Query: 343 ----------AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKI--FLDFGFDYSKAV 390
                      Q    ++ + S+    F +EVL +IG  +     I   L+      +A 
Sbjct: 181 GGSDTTDQQSGQNGPILFAEISMLHMEFFQEVLDIIGKRVQQQQGIDALLNSERGCVEAK 240

Query: 391 DLGYISTKLHELLQLFLSFGKSTQVLCII 419
           ++GYIS KL+EL+Q+FLSF     V C+I
Sbjct: 241 NMGYISPKLYELMQVFLSFSDPDNVRCLI 269


>gi|371496114|gb|AEX31636.1| Dicer 2 [Aedes albopictus]
          Length = 821

 Score =  224 bits (570), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 189/669 (28%), Positives = 327/669 (48%), Gaps = 50/669 (7%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFL 99
           +F+PR YQ  +  +  ++NTI  L TGAGKT IA+M IK++ + +    + G K+   F+
Sbjct: 10  DFVPRDYQRSMKLICMQKNTIIYLPTGAGKTHIALMAIKEMGRDLDKPLTEGGKR-TFFV 68

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
             TV L  QQ + +  +  ++   Y   + VD W    W  E  K  V+V T QILLD L
Sbjct: 69  VNTVALAKQQAEFLSRNLTYDTSIYTSDRNVDTWKQDKWLDEFAKFQVVVCTCQILLDVL 128

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--KSDNKPKVFGMTASPVVRKGVS 217
           +  +LS+  +  ++ DECHH  G HP   IM++F    KSD+ P+V G++   ++ K + 
Sbjct: 129 KHGYLSIKHINLLIFDECHHGVGEHPMHGIMEQFLRVPKSDH-PRVIGLSGM-LLYKQIK 186

Query: 218 SAMDCEGQISELESTLDSQVFTI---EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
           +      ++  LE+T +S + T+   +  TE+  F  + KE    YD  +   S +   +
Sbjct: 187 TVDQVSPELERLENTFNSTIATVGSYDAFTEVCRFSTNPKELLVSYDSLRL--SPVMVDI 244

Query: 275 EVSWSKFDASLSKLQGSQ-LNCYKD-MDDKHKTLRKQLSDYHAKILYCLDELGLI-CAYE 331
             S   F  +++     + LN  K  M D+ K L K++     +++Y L + GL  C+  
Sbjct: 245 VRSIEAFSQTINDFHLPKYLNQNKALMKDRPKPL-KEIKKLFTELVYQLGDTGLFGCSIA 303

Query: 332 AVKICLEKVL-KAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV 390
            + + ++  L K Q +  + R +   C  F E + H I   +          G D  + +
Sbjct: 304 LLGLIVQFELDKRQSDSSMLRLALRSCITFCESLRHQIEKLMS---------GLDIKEKL 354

Query: 391 DLGYISTKLHEL---LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH----L 443
              + S K+ +L   L+      +  +   ++FV+R  +AKV+   +K     T     +
Sbjct: 355 T-RFSSLKIRQLINELEKMYERNRDKKAKTLVFVQRRFSAKVLYHVLKIYFSQTEDADLI 413

Query: 444 TVAYLTGSTTSV-----DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
              ++ GS  S+       L+ K  + V+E F+  + N++  T+V+EEG+ +  C+ VI+
Sbjct: 414 LPDFMVGSNGSMPESIEQILSAKKDRRVIERFKRNETNVIVTTNVLEEGIDLQMCNTVIK 473

Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILML---ERGNLKQRNKLFDIIRSE--RSVTDTALS 553
           +D P+T +SY QS+GRAR  +SQ+++ML   ER    ++ +L+  I  E  R +    ++
Sbjct: 474 YDHPQTFASYQQSKGRARMKDSQYMVMLNNEERQKFLEKYRLYKSIEQELQRCLIGKTIN 533

Query: 554 R-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK-- 610
           R DP    +    Y +       + GA +   S+V L++RYC  +P D +      ++  
Sbjct: 534 RPDPLDADVHKELYNEIIPPFFTAKGAKLDALSAVQLLNRYCMGMPRDAFTNTNVTWERV 593

Query: 611 -YKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPS 669
             K+ +   E  L L S    + I+G   RN  L+K+     AC KL++   L++HL+P 
Sbjct: 594 DLKNGQIVVEVMLPLQSTVR-EKILGNPMRNIKLAKRSAAFNACRKLYENKELSEHLIPI 652

Query: 670 VEEPSENNL 678
                 NNL
Sbjct: 653 DCRNQLNNL 661


>gi|371486410|gb|AEX31250.1| Dicer 2 [Aedes albopictus]
          Length = 1659

 Score =  223 bits (569), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 189/669 (28%), Positives = 327/669 (48%), Gaps = 50/669 (7%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFL 99
           +F+PR YQ  +  +  ++NTI  L TGAGKT IA+M IK++ + +    + G K+   F+
Sbjct: 10  DFVPRDYQRSMKLICMQKNTIIYLPTGAGKTHIALMAIKEMGRDLDKPLTEGGKR-TFFV 68

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
             TV L  QQ + +  +  ++   Y   + VD W    W  E  K  V+V T QILLD L
Sbjct: 69  VNTVALAKQQAEFLSRNLTYDTSIYTSDRNVDTWKQDKWLDEFAKFQVVVCTCQILLDVL 128

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--KSDNKPKVFGMTASPVVRKGVS 217
           +  +LS+  +  ++ DECHH  G HP   IM++F    KSD+ P+V G++   ++ K + 
Sbjct: 129 KHGYLSIKHINLLIFDECHHGVGEHPMHGIMEQFLRVPKSDH-PRVIGLSGM-LLYKQIK 186

Query: 218 SAMDCEGQISELESTLDSQVFTI---EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
           +      ++  LE+T +S + T+   +  TE+  F  + KE    YD  +   S +   +
Sbjct: 187 TVDQVSPELERLENTFNSTIATVGSYDAFTEVCRFSTNPKELLVSYDSLRL--SPVMVDI 244

Query: 275 EVSWSKFDASLSKLQGSQ-LNCYKD-MDDKHKTLRKQLSDYHAKILYCLDELGLI-CAYE 331
             S   F  +++     + LN  K  M D+ K L K++     +++Y L + GL  C+  
Sbjct: 245 VRSIEAFSQTINDFHLPKYLNQNKALMKDRPKPL-KEIKKLFTELVYQLGDTGLFGCSIA 303

Query: 332 AVKICLEKVL-KAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV 390
            + + ++  L K Q +  + R +   C  F E + H I   +          G D  + +
Sbjct: 304 LLGLIVQFELDKRQSDSSMLRLALRSCITFCESLRHQIEKLMS---------GLDIKEKL 354

Query: 391 DLGYISTKLHEL---LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH----L 443
              + S K+ +L   L+      +  +   ++FV+R  +AKV+   +K     T     +
Sbjct: 355 T-RFSSLKIRQLINELEKMYERNRDKKAKTLVFVQRRFSAKVLYHVLKIYFSQTEDADLI 413

Query: 444 TVAYLTGSTTSV-----DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
              ++ GS  S+       L+ K  + V+E F+  + N++  T+V+EEG+ +  C+ VI+
Sbjct: 414 LPDFMVGSNGSMPESIEQILSAKKDRRVIERFKKNETNVIVTTNVLEEGIDLQMCNTVIK 473

Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILML---ERGNLKQRNKLFDIIRSE--RSVTDTALS 553
           +D P+T +SY QS+GRAR  +SQ+++ML   ER    ++ +L+  I  E  R +    ++
Sbjct: 474 YDHPQTFASYQQSKGRARMKDSQYMVMLNNEERQKFLEKYRLYKSIEQELQRCLIGKTIN 533

Query: 554 R-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK-- 610
           R DP    +    Y +       + GA +   S+V L++RYC  +P D +      ++  
Sbjct: 534 RPDPLDADVHKELYNEIIPPFFTAKGAKLDALSAVQLLNRYCMGMPRDAFTNTNVTWERV 593

Query: 611 -YKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPS 669
             K+ +   E  L L S    + I+G   RN  L+K+     AC KL++   L++HL+P 
Sbjct: 594 DLKNGQIVVEVMLPLQSTVR-EKILGNPMRNIKLAKRSAAFNACRKLYENKELSEHLIPI 652

Query: 670 VEEPSENNL 678
                 NNL
Sbjct: 653 DCRNQLNNL 661



 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 111/264 (42%), Gaps = 42/264 (15%)

Query: 1054 NFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRS 1113
            N ++    IL+A+TT    + F +ER ELLGD+ LK+A S +L   + + HEG L+A + 
Sbjct: 1168 NVNLQQKDILKAITTKSAADVFDLERYELLGDAFLKFATSLYLIKYHKEWHEGFLTAVKG 1227

Query: 1114 WAVCNSTLHKLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPCECGVDTLEVPLDGKF 1172
              V N  L        L G ++   FDP+  W  P    L  VP         V    + 
Sbjct: 1228 QIVSNRNLVYCAIKYGLPGMLKVHKFDPKNDWQPP----LATVPKNIKQTMQAVNHSARV 1283

Query: 1173 FTQ--------DTKVVVGKPCD---------------------MGHRWMGSKTIADCAEA 1203
              +         T VV  K  D                     +  + MG KT AD  EA
Sbjct: 1284 LYRLTMTDEEIKTGVVDPKTSDEFIAQLEMHGNTPDPSPMANYLSQQTMGDKTPADAMEA 1343

Query: 1204 LIGAYYVGGGLIAALYMMKWLGIDADLE--VSLVDDCITRASLRSYVPR------INEIK 1255
            L+G      G+  +  ++ + G+       + L+D+ I    LR+++        +    
Sbjct: 1344 LLGVCVQTVGMQRSFKLLPYFGMLPKTHDVLKLLDEKIENQRLRTHIDYREVDGFLKNHS 1403

Query: 1256 DIESKIGYEFTVKFLLQEAITHAS 1279
             IES +GY+F  +  L +A+THAS
Sbjct: 1404 RIESILGYKFKDRTYLLQALTHAS 1427



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 29/184 (15%)

Query: 903  DAKNLKDMVVLAIHTG---RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVL 959
            +A N +  V+L  +     + Y +  +  + +  SPF    + +  ++ NYFSE Y + +
Sbjct: 857  EADNYRHKVILPWYKNNKEQPYVVTMVHEHLTPGSPF---PNAEYGSYANYFSEAYHLAV 913

Query: 960  IHPGQPLLRLKQSHNPHNLLVNFNDG-GGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVP 1018
            + P Q L+ +K   +  N L   N G    GK ++S    K  + +  + PEL      P
Sbjct: 914  VKPDQFLIEVKGITSYLNRL---NPGVEDDGKSTRS----KHWRFNEILIPELCHNYQFP 966

Query: 1019 ISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSME 1078
                    LLPS + R+  L+LA ++R +               L     +GC E+ ++E
Sbjct: 967  ADYWLKATLLPSALHRIHYLLLAEKIRVD---------------LATGANVGCLENHTIE 1011

Query: 1079 RLEL 1082
             +++
Sbjct: 1012 DVDV 1015


>gi|371486404|gb|AEX31247.1| Dicer 2 isoform A [Aedes albopictus]
 gi|371486406|gb|AEX31248.1| Dicer 2 isoform B [Aedes albopictus]
          Length = 1659

 Score =  223 bits (569), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 186/659 (28%), Positives = 324/659 (49%), Gaps = 50/659 (7%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFL 99
           +F+PR YQ  +  +  ++NTI  L TGAGKT IA+M IK++ + +    + G K+   F+
Sbjct: 10  DFVPRDYQRSMKLICMQKNTIIYLPTGAGKTHIALMAIKEMGRDLDKPLTEGGKR-TFFV 68

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
             TV L  QQ + +  +  ++   Y   + VD W    W  E  K  V+V T QILLD L
Sbjct: 69  VNTVALAKQQAEFLSRNLTYDTSIYTSDRNVDTWKQDKWLDEFAKFQVVVCTCQILLDVL 128

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--KSDNKPKVFGMTASPVVRKGVS 217
           +  +LS+  +  ++ DECHH  G HP   IM++F    KSD+ P+V G++   ++ K + 
Sbjct: 129 KHGYLSIKHINLLIFDECHHGVGEHPMHGIMEQFLRVPKSDH-PRVIGLSGM-LLYKQIK 186

Query: 218 SAMDCEGQISELESTLDSQVFTI---EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
           +      ++  LE+T +S + T+   +  TE+  F  + KE    YD  +   S +   +
Sbjct: 187 TVDQVSPELERLENTFNSTIATVGSYDAFTEVCRFSTNPKELLVSYDSLRL--SPVMVDI 244

Query: 275 EVSWSKFDASLSKLQGSQ-LNCYKD-MDDKHKTLRKQLSDYHAKILYCLDELGLI-CAYE 331
             S   F  +++     + LN  K  M D+ K L K++     +++Y L + GL  C+  
Sbjct: 245 VRSIEAFSQTINDFHLPKYLNQNKALMKDRPKPL-KEIKKLFTELVYQLGDTGLFGCSIA 303

Query: 332 AVKICLEKVL-KAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV 390
            + + ++  L K Q +  + R +   C  F E + H I   +          G D  + +
Sbjct: 304 LLGLIVQFELDKRQSDSSMLRLALRSCITFCESLRHQIEKLMS---------GLDIKEKL 354

Query: 391 DLGYISTKLHEL---LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH----L 443
              + S K+ +L   L+      +  +   ++FV+R  +AKV+   +K     T     +
Sbjct: 355 T-RFSSLKIRQLINELEKMYERNRDKKAKTLVFVQRRFSAKVLYHVLKIYFSQTEDADLI 413

Query: 444 TVAYLTGSTTSV-----DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
              ++ GS  S+       L+ K  + V+E F+  + N++  T+V+EEG+ +  C+ VI+
Sbjct: 414 LPDFMVGSNGSMPESIEQILSAKKDRRVIERFKKNETNVIVTTNVLEEGIDLQMCNTVIK 473

Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILML---ERGNLKQRNKLFDIIRSE--RSVTDTALS 553
           +D P+T +SY QS+GRAR  +SQ+++ML   ER    ++ +L+  I  E  R +    ++
Sbjct: 474 YDHPQTFASYQQSKGRARMKDSQYMVMLNNEERQKFLEKYRLYKSIEQELQRCLIGKTIN 533

Query: 554 R-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK-- 610
           R DP    +    Y +       + GA +   S+V L++RYC  +P D +      ++  
Sbjct: 534 RPDPLDADVHKELYNEIIPPFFTAKGAKLDALSAVQLLNRYCMGMPRDAFTNTNVTWERV 593

Query: 611 -YKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
             K+ +   E  L L S    + I+G   RN  L+K+     AC KL++   L++HL+P
Sbjct: 594 DLKNGQIVVEVMLPLQSTVR-EKILGNPMRNIKLAKRSAAFNACRKLYENKELSEHLIP 651



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 111/264 (42%), Gaps = 42/264 (15%)

Query: 1054 NFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRS 1113
            N ++    IL+A+TT    + F +ER ELLGD+ LK+A S +L   + + HEG L+A + 
Sbjct: 1168 NVNLQQKDILKAITTKSAADVFDLERYELLGDAFLKFATSLYLIKYHKEWHEGFLTAVKG 1227

Query: 1114 WAVCNSTLHKLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPCECGVDTLEVPLDGKF 1172
              V N  L        L G ++   FDP+  W  P    L  VP         V    + 
Sbjct: 1228 QIVSNRNLVYCAIKYGLPGMLKVHKFDPKNDWQPP----LATVPKNIKQTMQAVNHSARV 1283

Query: 1173 FTQ--------DTKVVVGKPCD---------------------MGHRWMGSKTIADCAEA 1203
              +         T VV  K  D                     +  + MG KT AD  EA
Sbjct: 1284 LYRLTMTDEEIKTGVVDPKTSDEFIAQLEMHGNTPDPSPMANYLSQQTMGDKTPADAMEA 1343

Query: 1204 LIGAYYVGGGLIAALYMMKWLGIDADLE--VSLVDDCITRASLRSYVPR------INEIK 1255
            L+G      G+  +  ++ + G+       + L+D+ I    LR+++        +    
Sbjct: 1344 LLGVCVQTVGMQRSFKLLPYFGMLPKTHDVLKLLDEKIENQRLRTHIDYREVDGFLKNHS 1403

Query: 1256 DIESKIGYEFTVKFLLQEAITHAS 1279
             IES +GY+F  +  L +A+THAS
Sbjct: 1404 RIESILGYKFKDRTYLLQALTHAS 1427



 Score = 42.4 bits (98), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 29/184 (15%)

Query: 903  DAKNLKDMVVLAIHTG---RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVL 959
            +A N +  V+L  +     + Y +  +  + +  SPF    + +  ++ NYFSE Y + +
Sbjct: 857  EADNYRHKVILPWYKNNKEQPYVVTMVHEHLTPGSPF---PNAEYGSYANYFSEAYHLAV 913

Query: 960  IHPGQPLLRLKQSHNPHNLLVNFNDG-GGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVP 1018
            + P Q L+ +K   +  N L   N G    GK ++S    K  + +  + PEL      P
Sbjct: 914  VKPDQFLIEVKGITSYLNRL---NPGVEDDGKSTRS----KHWRFNEILIPELCHNYQFP 966

Query: 1019 ISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSME 1078
                    LLPS + R+  L+LA ++R +               L     +GC E+ ++E
Sbjct: 967  ADYWLKATLLPSALHRIHYLLLAEKIRVD---------------LATGANVGCLENHTIE 1011

Query: 1079 RLEL 1082
             +++
Sbjct: 1012 DVDV 1015


>gi|403179647|ref|XP_003337961.2| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|375165151|gb|EFP93542.2| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1460

 Score =  223 bits (569), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 189/657 (28%), Positives = 306/657 (46%), Gaps = 76/657 (11%)

Query: 45  IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA-QAIKSNGFKKLIIFLAPTV 103
           IPR+YQ ++ E AK+RN I   +TG GKT +A+ LI  IA Q+  ++   ++  FLAPT 
Sbjct: 21  IPRLYQAELLEEAKKRNIIIRADTGTGKTFVALSLITWIAAQSPANHDDHRIQAFLAPTR 80

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            L HQQ + I+ H    V+ Y G    + W+   W  E+N+ DV+V T QI  D + K +
Sbjct: 81  PLAHQQAEYIQKHCTLRVKAYTGDLQPELWNIDKWHSELNEVDVIVSTAQIFYDLISKGY 140

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVR-KGVS 217
             L+ V  ++ DE HH   NH Y +IM+  YH+     +   PK+ G+TASP+   K + 
Sbjct: 141 WKLEDVSLLIFDEAHHCRKNHIYNQIMRSHYHRLAKDPTVRLPKILGLTASPIWNYKDLE 200

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTE---MEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
            A   +  I  L+S L +Q++ ++  TE      F P+  E   +++ S     + +   
Sbjct: 201 RA---DSDIKSLQSALAAQIYEVKTHTEDVCQHNFKPN--EKVVYFEPS----PEFEKNS 251

Query: 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334
              W + +  LS      L+    M    +++  +L  Y A  L  LD L  +    A  
Sbjct: 252 HPPWDQINQLLS------LHASPKMIAAMESVSLELGTY-AHSLAVLDWLKSLLTVGASN 304

Query: 335 ICLE-KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393
             +  ++L   ++ +I             EV+  +   + + D     F           
Sbjct: 305 QAMPGRLLDPNKQKQI------------REVIQELEELVNIDDIPETQF----------- 341

Query: 394 YISTKLHELLQLFLSFGKS---TQVLCIIFVERIIAAK----VVERFVKKVPFL--THLT 444
             S+K+  L ++ +S+ +       LCI+FVER   A+    ++ER  +   FL  T LT
Sbjct: 342 --SSKVAVLNKILVSYKEKDNHDNFLCIVFVERRQHAQLLPFLLERNAQLKGFLRPTALT 399

Query: 445 VAYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
             +  G+   +    +  + Q + +  FR G+ NL  AT V EEG+   +C  VIRFDL 
Sbjct: 400 -GHAGGNVNDLIGIKMDSRTQNKAVAKFRTGEYNLTIATSVAEEGLDFRSCRVVIRFDLI 458

Query: 503 KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLK 562
            T   YIQSRGRAR   S +I+ML  G     NK  +    E  +   AL   PE   ++
Sbjct: 459 TTWKGYIQSRGRARARESDYIVMLPNGT---TNKYLEFTGKEEQL-KAALYNRPEDELIE 514

Query: 563 ACTYVKTKSYIVESTGAS---VTTDSSVNLIHRYCEMLPSDKYY-TPKPIFKYKSAEEAY 618
                 T   I +  G     +T  ++ +L++  C+++P D++     P ++     + +
Sbjct: 515 EGEEEWTPQLICQLAGGKESILTYSAATSLLNDVCQLIPPDEFLPVVAPQYEITWLGDNF 574

Query: 619 ECELTLPSNAPF----QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVE 671
           +C++TLP  A      +T  G     K  +K+    EAC+ L ++  LN H LP  E
Sbjct: 575 QCQVTLPPMAALHPSQRTFTGLAMATKKDAKRSAAFEACKVLRELDVLNQHFLPQRE 631



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 190/468 (40%), Gaps = 120/468 (25%)

Query: 992  SKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCH 1051
            SKS     +P   + +P +L     +P S+ K    LPS+ + L   + A+ L + ++  
Sbjct: 880  SKSESTVVQPH-RILLPLKLCKGTHIPRSMWKVFSYLPSLTRLLHDSLQATTLFKRLD-- 936

Query: 1052 SRNFHIPSSLIL---EALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQL 1108
                  P+  +L   +ALT  G    +  + LE LGD+ LK A S H++L++ KK EG +
Sbjct: 937  -----FPTISLLHGIQALTPPGGGVPWDYQTLETLGDAFLKLATSVHVYLSHLKKGEGDM 991

Query: 1109 SARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPL 1168
            S  RS +V N+ L +      L   I    F   R+  P              D  E+P 
Sbjct: 992  SHVRSRSVDNAYLRRKAIQANLPASILSQRFRTDRFRDPQT-----------EDGKELP- 1039

Query: 1169 DGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI-- 1226
            +G F                 R +  + ++D  EAL+GA ++ GG+   L +   L +  
Sbjct: 1040 NGNF----------------SRKIPKRVLSDVVEALLGAGFLTGGIELGLKIGTALDLCF 1083

Query: 1227 -----DADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281
                  ++  V++  + IT  +L      + + + +E KIGY F  K LL +A+TH S  
Sbjct: 1084 GGTAPWSERPVNIGLESITHDALEPST--LLKCQALEEKIGYVFKEKLLLVQALTHRSAN 1141

Query: 1282 EFY--CY----------------QNLYKHLQHCS----TLLLSQIT-------------- 1305
             F   CY                ++ YK   H +    TL  +++               
Sbjct: 1142 SFMTNCYEREEWLGDAVIDMWIVEHAYKRFDHATAEELTLARAKVVSNGSLGFLALKKLG 1201

Query: 1306 --------------------EYVKSFPKPGETTDSGPSM----KAPKALGDLLESIVGAV 1341
                                E +K F K  E   +  ++      PK L D+LE+IVGAV
Sbjct: 1202 LQEIIMHASENFEQACTEAIEAIKPFAKIEEYFSTIDNLFVVFDPPKILNDVLEAIVGAV 1261

Query: 1342 LIDTKLNLDEVWR----IFK---PILSPIVTPDKLELPPLRELIELCD 1382
             +D+  NL   +R    IF+   P LS +V  D     PL  ++ L D
Sbjct: 1262 FVDSGFNLQSAYRTLDIIFEDVIPGLSRLVARD-----PLSTMLRLRD 1304


>gi|371486408|gb|AEX31249.1| Dicer 2 [Aedes albopictus]
          Length = 1625

 Score =  223 bits (568), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 189/669 (28%), Positives = 327/669 (48%), Gaps = 50/669 (7%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFL 99
           +F+PR YQ  +  +  ++NTI  L TGAGKT IA+M IK++ + +    + G K+   F+
Sbjct: 10  DFVPRDYQRSMKLICMQKNTIIYLPTGAGKTHIALMAIKEMGRDLDKPLTEGGKR-TFFV 68

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
             TV L  QQ + +  +  ++   Y   + VD W    W  E  K  V+V T QILLD L
Sbjct: 69  VNTVALAKQQAEFLSRNLTYDTSIYTSDRNVDTWKQDKWLDEFAKFQVVVCTCQILLDVL 128

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--KSDNKPKVFGMTASPVVRKGVS 217
           +  +LS+  +  ++ DECHH  G HP   IM++F    KSD+ P+V G++   ++ K + 
Sbjct: 129 KHGYLSIKHINLLIFDECHHGVGEHPMHGIMEQFLRVPKSDH-PRVIGLSGM-LLYKQIK 186

Query: 218 SAMDCEGQISELESTLDSQVFTI---EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
           +      ++  LE+T +S + T+   +  TE+  F  + KE    YD  +   S +   +
Sbjct: 187 TVDQVSPELERLENTFNSTIATVGSYDAFTEVCRFSTNPKELLVSYDSLRL--SPVMVDI 244

Query: 275 EVSWSKFDASLSKLQGSQ-LNCYKD-MDDKHKTLRKQLSDYHAKILYCLDELGLI-CAYE 331
             S   F  +++     + LN  K  M D+ K L K++     +++Y L + GL  C+  
Sbjct: 245 VRSIEAFSQTINDFHLPKYLNQNKALMKDRPKPL-KEIKKLFTELVYQLGDTGLFGCSIA 303

Query: 332 AVKICLEKVL-KAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV 390
            + + ++  L K Q +  + R +   C  F E + H I   +          G D  + +
Sbjct: 304 LLGLIVQFELDKRQSDSSMLRLALRSCITFCESLRHQIEKLMS---------GLDIKEKL 354

Query: 391 DLGYISTKLHEL---LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH----L 443
              + S K+ +L   L+      +  +   ++FV+R  +AKV+   +K     T     +
Sbjct: 355 -TRFSSLKIRQLINELEKMYERNRDKKAKTLVFVQRRFSAKVLYHVLKIYFSQTEDADLI 413

Query: 444 TVAYLTGSTTSV-----DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
              ++ GS  S+       L+ K  + V+E F+  + N++  T+V+EEG+ +  C+ VI+
Sbjct: 414 LPDFMVGSNGSMPESIEQILSAKKDRRVIERFKRNETNVIVTTNVLEEGIDLQMCNTVIK 473

Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILML---ERGNLKQRNKLFDIIRSE--RSVTDTALS 553
           +D P+T +SY QS+GRAR  +SQ+++ML   ER    ++ +L+  I  E  R +    ++
Sbjct: 474 YDHPQTFASYQQSKGRARMKDSQYMVMLNNEERQKFLEKYRLYKSIEQELQRCLIGKTIN 533

Query: 554 R-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK-- 610
           R DP    +    Y +       + GA +   S+V L++RYC  +P D +      ++  
Sbjct: 534 RPDPLDADVHKELYNEIIPPFFTAKGAKLDALSAVQLLNRYCMGMPRDAFTNTNVTWERV 593

Query: 611 -YKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPS 669
             K+ +   E  L L S    + I+G   RN  L+K+     AC KL++   L++HL+P 
Sbjct: 594 DLKNGQIVVEVMLPLQSTVR-EKILGNPMRNIKLAKRSAAFNACRKLYENKELSEHLIPI 652

Query: 670 VEEPSENNL 678
                 NNL
Sbjct: 653 DCRNQLNNL 661



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 111/264 (42%), Gaps = 42/264 (15%)

Query: 1054 NFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRS 1113
            N ++    IL+A+TT    + F +ER ELLGD+ LK+A S +L   + + HEG L+A + 
Sbjct: 1134 NVNLQQKDILKAITTKSAADVFDLERYELLGDAFLKFATSLYLIKYHKEWHEGFLTAVKG 1193

Query: 1114 WAVCNSTLHKLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPCECGVDTLEVPLDGKF 1172
              V N  L        L G ++   FDP+  W  P    L  VP         V    + 
Sbjct: 1194 QIVSNRNLVYCAIKYGLPGMLKVHKFDPKNDWQPP----LATVPKNIKQTMQAVNHSARV 1249

Query: 1173 FTQ--------DTKVVVGKPCD---------------------MGHRWMGSKTIADCAEA 1203
              +         T VV  K  D                     +  + MG KT AD  EA
Sbjct: 1250 LYRLTMTDEEIKTGVVDPKTSDEFIAQLEMHGNTPDPSPMANYLSQQTMGDKTPADAMEA 1309

Query: 1204 LIGAYYVGGGLIAALYMMKWLGIDADLE--VSLVDDCITRASLRSYVPR------INEIK 1255
            L+G      G+  +  ++ + G+       + L+D+ I    LR+++        +    
Sbjct: 1310 LLGVCVQTVGIQRSFKLLPYFGMLPKTHDVLKLLDEKIENQRLRTHIDYREVDGFLKNHS 1369

Query: 1256 DIESKIGYEFTVKFLLQEAITHAS 1279
             IES +GY+F  +  L +A+THAS
Sbjct: 1370 RIESILGYKFKDRTYLLQALTHAS 1393



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 29/184 (15%)

Query: 903  DAKNLKDMVVLAIHTG---RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVL 959
            +A N +  V+L  +     + Y +  +  + +  SPF    + +  ++ NYFSE Y + +
Sbjct: 823  EADNYRHKVILPWYKNNKEQPYVVTMVHEHLTPGSPF---PNAEYGSYANYFSEAYHLAV 879

Query: 960  IHPGQPLLRLKQSHNPHNLLVNFNDG-GGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVP 1018
            + P Q L+ +K   +  N L   N G    GK ++S    K  + +  + PEL      P
Sbjct: 880  VKPDQFLIEVKGITSYLNRL---NPGVEDDGKSTRS----KHWRFNEILIPELCHNYQFP 932

Query: 1019 ISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSME 1078
                    LLPS + R+  L+LA ++R +               L     +GC E+ ++E
Sbjct: 933  ADYWLKATLLPSALHRIHYLLLAEKIRVD---------------LATGANVGCLENHTIE 977

Query: 1079 RLEL 1082
             +++
Sbjct: 978  DVDV 981


>gi|195150547|ref|XP_002016212.1| GL10619 [Drosophila persimilis]
 gi|194110059|gb|EDW32102.1| GL10619 [Drosophila persimilis]
          Length = 1720

 Score =  222 bits (566), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 189/674 (28%), Positives = 317/674 (47%), Gaps = 64/674 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   + N I  L TG+GKT +A++ +K    D+ ++I+  G  K  IF+  
Sbjct: 8   PRSYQLRLVDHITKNNGIIYLPTGSGKTYVAILALKRFSKDMDKSIEEGG--KRAIFMCN 65

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R  ++ +V  + G +GVD+W    W  EI+ + VLV T Q++L+ + +
Sbjct: 66  TVELARQQAMAVRKFSNLKVGFFVGEQGVDDWSKIKWSHEISDSQVLVGTAQVMLNMVTQ 125

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASPVVRKGVSSA 219
            +L L  V  ++IDECHH TG+HPY + M  F     N   P+V G+T   V+ KG    
Sbjct: 126 KYLELSSVSIVIIDECHHGTGHHPYHEFMHLFLLADRNTPLPRVVGLTG--VLIKGNEFK 183

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEME-VFVPSAK-ESCRFYDQSKFCGSDLKGKLEVS 277
           +  + ++ ELE+T  S + T+ D  E++ V + S K   C     ++    ++   +   
Sbjct: 184 LVAQ-KLRELETTYRSNIITVSDTEELKNVMLYSTKPRECLVTYPNQVGSLEIGHAIHRC 242

Query: 278 WSKFDASLSKLQ-GSQLNCYKD----MDDKHKT--LRKQLSDYHAKILYCLDELGLICAY 330
              F   L  L+ G Q   Y      + D HK   ++  L+D+     Y L+  G+  A 
Sbjct: 243 IEHFYVRLDDLEIGKQPTRYSKGLSTLRDPHKKGYIKTLLNDFQ----YQLENYGVYAAA 298

Query: 331 EA-VKICLEKVLKAQEE-----CEIYRQSSLQCKYFLEEVLHVIGSAL-PLADKIFLDFG 383
            A V + LE  +K  +        IY+ +   C      + H++   L  L D       
Sbjct: 299 MAIVSVILEFEIKLHQSETLALTHIYKLAICMCN----RINHMLKKKLRDLVDDDTEPDD 354

Query: 384 FDYSKAVDLGYISTKLHELL---QLFLSFGKSTQVLCIIFVERIIAAK----VVERFVKK 436
             +++   + + + K+   L   Q   S   +  + C++FVER   +K    ++++F+  
Sbjct: 355 AVHTEETIINFSTPKVQRFLHYVQKTFSGKNAKDICCLVFVERRYTSKCIYQLLKKFIAA 414

Query: 437 VPFLTHLTVAYLTGSTTSVDA-----LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
           +P L  + V        SV A     L  K QK  +  FR G+ NL+  + V+EEG+ V 
Sbjct: 415 IPALRDVLVPQFMVGRNSVSADCESVLERKWQKSAIHQFRDGEANLMVCSSVLEEGIDVK 474

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS----- 546
            C+YV+  D  KT + Y+Q++GRAR  ++QF+L     +  + N+  +  R   +     
Sbjct: 475 ACNYVLILDPIKTFNMYVQTKGRARSKDAQFVLFSSDLDRIKTNQQINQYRQAHTDIGEY 534

Query: 547 VTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPK 606
           + D  L R        A  + +     +   GA +   S++ L+HRYC+ LPSD +   +
Sbjct: 535 LKDRVLDRAEPLMQEIADHFHELIPPFINEKGAVLLPSSALILLHRYCQSLPSDAFGFVE 594

Query: 607 PIFKYKSAEEAYECELTLPSNAPFQTIVGPTS---RNKNLSKQLVCLEA---------CE 654
           P F   S ++  E   T  ++  F +I  P S   R+   S  +  ++A         C 
Sbjct: 595 PWFTLISWDQKRELFGTQAASKEFVSIELPLSSSVRDIFYSDPMTSVKAAKISAAFKTCI 654

Query: 655 KLHQVGALNDHLLP 668
           KL+  G LN+  LP
Sbjct: 655 KLYSTGELNERFLP 668



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 127/328 (38%), Gaps = 67/328 (20%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+TT G  + + MER ELLGDS LK + S +L   YP  +EG L+  +S  V N  L
Sbjct: 1202 FLAAITTAGSADVYDMERAELLGDSFLKMSASLYLASRYPDWNEGTLTQVKSRLVSNKNL 1261

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQ------ 1175
                 +  +   I  S FDPR       L+  P       D L+V  +   F +      
Sbjct: 1262 MYCLRETDIPSRISCSLFDPR-------LTWLPPSINLPEDVLDVWTEQPSFAKLIGPHN 1314

Query: 1176 -------DTKVVVGKPCD-------------------------------MGHRWMGSKTI 1197
                   D +++ G+ C+                                G   + +K +
Sbjct: 1315 LFDLALSDEEILAGR-CNEDTYRRFVHGCKSNQQGYYAGRDFSSGVNYFFGEVTVQNKVV 1373

Query: 1198 ADCAEALIGAYYVGGGLIAALYMMKWLGI---DADLEVS-LVDDCITRASLRSYVP---- 1249
            AD  EAL+G      GL     M+++ GI   + D  +S L+D  +    +R+       
Sbjct: 1374 ADTLEALLGVIVRNYGLQHGFRMLEYFGICKPEVDKPLSQLLDLQLKSTKMRANASPGDI 1433

Query: 1250 ---RINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNLYKHLQHCSTLLLSQ 1303
                IN    +E  +GY+F  +  L +A+TH S        CYQ L          L+S 
Sbjct: 1434 DGFLINH-SYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISA 1492

Query: 1304 ITEYVKSFPKPGETTDSGPSMKAPKALG 1331
                  +  +PGE TD   ++     LG
Sbjct: 1493 YIFENNTKLRPGELTDLRSALVNNTTLG 1520


>gi|321475108|gb|EFX86072.1| hypothetical protein DAPPUDRAFT_309030 [Daphnia pulex]
          Length = 1607

 Score =  222 bits (565), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 275/1111 (24%), Positives = 457/1111 (41%), Gaps = 240/1111 (21%)

Query: 32   VDGPSSSTN-SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD----IAQA 86
            ++ PS S N    F PR YQ+++F+ A   N I  L TG+GKT IA +LIK+    + + 
Sbjct: 18   MESPSKSCNVDTEFTPRDYQIELFQAALDENIIVYLPTGSGKTFIAALLIKEKSHEVTKP 77

Query: 87   IKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKND 146
            + S G  K  +FL PTV L  QQ   +R HT  +V+E+YG+ GVD W+   W  E + N 
Sbjct: 78   LDSGG--KRTVFLVPTVVLAIQQAAYLRRHTYLKVKEFYGSMGVDIWEKDRWNIEFDSNH 135

Query: 147  VLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFG 205
            VLVMT QI +D L  AF S   +  +V DECH A  + P  +++ +  + +   +PK+ G
Sbjct: 136  VLVMTAQIFVDILNHAFFSPHQLNLLVFDECHAAVKDAPMKQVLSKLKNCEVSQRPKILG 195

Query: 206  MTAS-----------PVVRKGVSSAMDCEGQI-SELESTLDSQ------VFTIEDKTEME 247
            +TA+           P + + +S  M C  +I S++E+   S       +   EDK    
Sbjct: 196  LTAALFRMRCKPEKVPDLIQQLSETMGCVVRIPSDVETVARSSTKPCETILQYEDKNSNP 255

Query: 248  VFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLR 307
               P A E  R         S L  +LE  + + ++      G  +N      DK   L 
Sbjct: 256  --NPDADELSRII---FVMVSSLMQQLEQQYGEGNSK----DGPDVN---KQPDKIDVLF 303

Query: 308  KQLSDYHAKILYCLDELG----LICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEE 363
              L+D    I Y L  +G      CA+  ++I LE+            +S  +   FL +
Sbjct: 304  DALND----IDYLLSTIGPYGAFHCAHVYIRI-LERT-----------KSRAKTAPFLTD 347

Query: 364  VLHVIGSALPLADKIFLDFGFDYSKAV--DLGYISTKLHELLQLFLSFGKSTQVLCIIFV 421
            ++                      K V   L +I +++      F  +    ++L  +  
Sbjct: 348  LIR---------------------KQVCNGLNFIISEV--CTPYFAKYSPVDRLLLFVQP 384

Query: 422  ERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFAT 481
              I        F+K  P  T    A    S      L  K Q E+++ FR G  NLL AT
Sbjct: 385  RDIAKHDTTLEFLK--PLFTMGKAAGRNSSLKETQILNMK-QNEIMQYFREGLCNLLVAT 441

Query: 482  DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDII 541
             V+EEG+ +P+C+ +IRFD  KT   Y+Q++GRAR   + + +++ RG            
Sbjct: 442  SVLEEGIDIPDCNLIIRFDRIKTYCDYVQTKGRARSKKAFYCILVSRG------------ 489

Query: 542  RSERSVTDTALSRDPEACFLKACTYVKTKSYIVES--------------TGASVTTDSSV 587
             +E  + D A     E   L    +   +   +++               G  +T  SS+
Sbjct: 490  ETESCLADLAQFHSIEQQLLSTGNFEDERDNAIDNLFSQIIPPYVPFGEDGPRITLPSSI 549

Query: 588  NLIHRYCEMLPSDKYYTPKPIF------------------------------KYKSAEEA 617
            +LI+RYC  L SD   +  P                                KY S    
Sbjct: 550  SLINRYCGQLSSDPDVSLAPQLTTKKVAESDVDPIQLQKIKDILKKLPTDASKYSSINNL 609

Query: 618  YECELTLPSNAPFQT-IVGPTSRNKNLSKQLVCLEACEKLHQVGALND-HLLP------- 668
            ++C L LP N+P +  ++G     K L+K+ V L+A  KLH++  L+D HL P       
Sbjct: 610  FQCHLFLPLNSPLRDEVIGDVMPTKRLAKRAVALKASIKLHELKELDDNHLFPVPRLNVI 669

Query: 669  ---SVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNF 725
               S  E  EN+   + N+         R+     +  R L    G+ C V    +    
Sbjct: 670  DDESSTEDEENSAAPQLNKE--NIAVYNRRLPVCFSNCRPLP---GQPCFVYAIDFTLTK 724

Query: 726  ACSIVTEIYSGFVL-----LIESELDNDVGNFELELYLVSKTVKATVSSSG--QVHLDAD 778
             C  +T++Y  F +     ++ S++   +  F     +V++  +  V+  G   V LD  
Sbjct: 725  PCLDITKLYFPFAVDTKLAILTSKVIPAICPFP----VVTRAGEFQVNLCGADSVILDQS 780

Query: 779  QMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETN-SLWSPSYMYLLLPLEIVNTF 837
            Q+ K + F +  F  +               F  KR+ +  + +    YL++PL+  N  
Sbjct: 781  QLGKLERFHQFVFQDVL--------------FLWKRQLDFDVLASDLQYLVVPLQTAN-- 824

Query: 838  GDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHL 897
                              ++F   ++ + A   N            P   G H       
Sbjct: 825  ----------------DKIDFALVENMINAPAIN---------WEKPPYAGDH------- 852

Query: 898  ANGSVDAKNLKDMVVLAIHT--GRIYSI-VEIVNNSSAESPFDGNTDDDSKTFVNYFSEK 954
                 D+  L D V++  +   G + +  V+ V++ +  +PF  N   + KT+ +YF  K
Sbjct: 853  --FIFDSSRLIDSVIVPSYKPLGTLNAFYVDRVSDLTPLTPFPNN---EFKTYASYFQLK 907

Query: 955  YGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVR 1014
            Y + L +  Q LL++ +  +  N LVN              + + + +  +H+  EL   
Sbjct: 908  YKLTLTNQQQQLLQVSREISGKNFLVN-------------RVASTREETPMHLVAELCHV 954

Query: 1015 VDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
              +  S+ K +  LP ++ RL+ +++A +LR
Sbjct: 955  HPLAGSIWKQVVWLPCILHRLDRMLVAEELR 985



 Score =  104 bits (259), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 189/475 (39%), Gaps = 119/475 (25%)

Query: 1054 NFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLF--LTYPKKHEGQLSAR 1111
            NF     +ILEALT     E F MER E +GDS+LK  +S +++      +  EG+LS  
Sbjct: 1150 NFGPSPGMILEALTLAKTHEGFDMERSETIGDSILKLVISIYVYGETGSDRCDEGRLSLM 1209

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFD-PRRWVAPGQLSLRPVPCECGVDTLEVPLDG 1170
            R   + N  L KLG  + +  +     F+    ++ PG                + P D 
Sbjct: 1210 RMRQINNKHLFKLGAKKDIGEFTVAQRFELMANFLPPG---------------FKTPTD- 1253

Query: 1171 KFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDA-- 1228
                 DT +          +++  K +ADC EALIG Y    G+  A+ +M W+G+    
Sbjct: 1254 ----PDTDINAHV-----QQYVLMKNVADCMEALIGVYLTTTGIKGAIKLMDWMGLKTVP 1304

Query: 1229 DLEVSLVDDC----ITRASLRSYVPRINEIKD--------------IESKIGYEFTVKFL 1270
             LE++  ++     I  ++  S      ++KD               E ++ Y F  K L
Sbjct: 1305 RLEIATFNEMNGFPILPSTFGSSTLNDTQLKDQEEALSQLFAGLESFEKRLRYTFKNKAL 1364

Query: 1271 LQEAITHASV---QEFYCYQNL-------------------------------------- 1289
            L EA+THAS    +   CYQ L                                      
Sbjct: 1365 LIEALTHASYIPNRITNCYQRLEFLGDAVLDYLVTRYYYDNPCQYTPAILTDLRSAMVNN 1424

Query: 1290 ------------YKHLQHCSTLLLSQITEYVKSFPKPG-----------ETTDSGPSMKA 1326
                        + +L+H S  L   +  +V+S  + G           ET++   S+ +
Sbjct: 1425 ETFAVMAVQNRFHLYLKHLSLSLNVILDRFVRSQEENGHLLMHNYFVLEETSEPHQSLAS 1484

Query: 1327 ----PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTP--DKLELPPLRELIEL 1380
                PK LGD+ ES+ GA+ +D+ ++LD VW+ + P L   +    +K+ +  LR L E 
Sbjct: 1485 NIDVPKVLGDIFESVAGAIFVDSGMSLDAVWKSYLPFLHDALEKFNEKIPISALRVLHER 1544

Query: 1381 CDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKK 1435
              +   F K      G +  A + +Q   V     G  ++ K+A  K A  +L K
Sbjct: 1545 YPNALKFRKSESLADGRLCVA-IEIQGTRVFKGAGGNSKTAKSAAAKYALSVLNK 1598


>gi|80979125|gb|ABB54765.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  222 bits (565), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 193/675 (28%), Positives = 319/675 (47%), Gaps = 66/675 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPT 102
           PR YQL++ +   + N I  L TG+GKT +A++ +K  +Q +     NG K+  +F+  T
Sbjct: 1   PRSYQLRLVDHLTKHNGIVYLPTGSGKTFVALLTLKRFSQDMDKRLENGGKR-ALFMCNT 59

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V L  QQ   ++ HT+  V  Y G +GVDEW    W  EI  + VLV T Q+ LD   ++
Sbjct: 60  VELARQQMVAVQRHTNLTVGFYVGXQGVDEWTRGQWSDEIQDHQVLVGTAQVFLDLFTQS 119

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASPVVRKGVSSAM 220
            ++L  V  +++DECHH TG+HPY + M+ F     NK  P+V G++   V+ KG +   
Sbjct: 120 HMTLSSVSVVIMDECHHGTGHHPYHEFMRLFLCAEKNKALPRVVGLSG--VLIKG-NEIK 176

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQSK------FCGSDLK 271
               ++ ELE T    + T+ D  EME   ++    KE    Y   +             
Sbjct: 177 QVVKKLKELEITYRGNIITVSDTEEMENVMLYSTKPKEYLITYPSQERVFLVTQSIQSQI 236

Query: 272 GKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330
            +   +    D  +  ++ S+ L C +D   K  ++++  +D+    L+ L E G+  A 
Sbjct: 237 QQFFATLDLMDIGVQPVRRSKSLQCQRD-PQKKSSIKQLFNDF----LFQLQEYGIYAAS 291

Query: 331 EA-VKICLEKVLK-AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY-S 387
            A + + +E  LK  Q E    +          E++ H++   L        D      +
Sbjct: 292 IAIISLIVEFDLKRRQAETLSLKLMHRTAMSLCEKIRHLLVQKLRDMTDEDDDPDDKVNT 351

Query: 388 KAVDLGYISTKLHELLQLFLSFGKST-------QVLCIIFVERIIAAKVVE----RFVKK 436
           + V L + + K    +Q FL + K+T        + C++FVER    K +      F+  
Sbjct: 352 EEVILSFSTPK----VQRFLQYLKTTFANKDPKDIXCLVFVERRYTCKCIYGLLLNFIDS 407

Query: 437 VPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
            P L + LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V 
Sbjct: 408 TPELRNVLTPQFMVGRNSISQDFESVLDRKYQKSAIQQFREGNANLMICSSVLEEGIDVQ 467

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM---LERGNLKQRNKLFDIIRSERS-- 546
            C+YV+  D  KT + Y+Q++GRAR +N+ F+L    L+RG + Q+   +    +E +  
Sbjct: 468 ACNYVLILDPLKTFNMYVQTKGRARSNNASFVLFSSELDRGKISQQIAQYRTAHAEIAEY 527

Query: 547 VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
           + D  L R +PE   +K       + +I E  GA +   S++ L+HRYC+ +P+D +   
Sbjct: 528 LKDRVLERTEPEMYEVKQHFQDVIQPFINEH-GAVLLPSSALILLHRYCQSMPTDAFGFV 586

Query: 606 KP-----------IFKYKSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEAC 653
            P           I     A       + LP N+  + TI      +   +K     +AC
Sbjct: 587 IPWISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLKNTIYSDPMDSVKAAKVSAAFKAC 646

Query: 654 EKLHQVGALNDHLLP 668
           + L+Q+G LN+  LP
Sbjct: 647 KLLYQLGELNERFLP 661



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 109/280 (38%), Gaps = 54/280 (19%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T+    + + MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1191 FLAAITSSSTADVYDMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNL 1250

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL--------RPVPCECGVDTLEVPLDGKFF 1173
                +D  +   I    F PR    P  +SL        R  P E  V      L     
Sbjct: 1251 LYCLSDTDIPKRISTILFTPRYTWLPPSISLPHNVLALWRENP-ELAVMVGPHNLRDLAL 1309

Query: 1174 TQDTKVVVGKPCDMGHR------------------------------WMGSKTIADCAEA 1203
             ++  +V G   D+ +                                +  K IAD  EA
Sbjct: 1310 GEEESMVSGHCSDINYNNFVEGCRANAQSHHAGADFSAEVNFCVGLVTIPDKVIADTLEA 1369

Query: 1204 LIGAYYVGGGLIAALYMMKWLGI-DADLE---VSLVDDCITRASLRSYVPRINEI----- 1254
            L+G      GL  A  M+++  I  AD+      L+D  +  + +R+ V    EI     
Sbjct: 1370 LLGVIVKNYGLQHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANV-NTTEIDGFLI 1428

Query: 1255 --KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
                +E+ +GY F  +  L +A+TH S        CYQ L
Sbjct: 1429 NHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQEL 1468


>gi|168039661|ref|XP_001772315.1| dsRNA-specific nuclease dicer and related ribonuclease
           [Physcomitrella patens subsp. patens]
 gi|162676302|gb|EDQ62786.1| dsRNA-specific nuclease dicer and related ribonuclease
           [Physcomitrella patens subsp. patens]
          Length = 566

 Score =  222 bits (565), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/455 (31%), Positives = 239/455 (52%), Gaps = 37/455 (8%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
             PR YQ++  E AK+ + I  LETG GKT +AVML++ IA  I+     ++ +FL P+V
Sbjct: 89  LTPRGYQIEALERAKKEDIIVYLETGCGKTHVAVMLLQHIADLIRKPS-TRIAVFLCPSV 147

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            LV QQ  V++ +T+F+V EYYG    + W+S+ W+ E+   ++ VMTP ILL  L   F
Sbjct: 148 PLVQQQARVVKRYTNFKVGEYYGEVNNNAWNSKAWEAELENTEIFVMTPAILLHNLHHCF 207

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN---KPKVFGMTASPVVRKGVSSAM 220
           + +D +  ++ DECHHA  +HPY  IM+EFYH  ++    P++ GMTASP     ++  +
Sbjct: 208 MRMDCIELLIFDECHHAHSHHPYANIMQEFYHGKEDLYRLPRILGMTASP-----INGKV 262

Query: 221 DCEG-----QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQS--------KFCG 267
           +C+G     +I ++E  L +++ T+++ +E+++ VP       +Y+ +        KFC 
Sbjct: 263 NCQGDSIRTKIDKIERMLHAKLHTVKESSELDLVVPRPHHKSEYYESAQTPNPVTLKFC- 321

Query: 268 SDLKGKLEVSWSKFDASLSKLQGSQLN--CYKDMDDKHKTLRKQLSDYHAKILYCLDELG 325
             L   L+          S  +G  L   C      + K ++K  +     + YC  ELG
Sbjct: 322 -QLLFDLQKECIGTLLGTSGCEGELLGELCSGVEKKRVKNVKKLCNS----LGYCATELG 376

Query: 326 LICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY-FLEEVLHVIGSALPLADKIFLDFGF 384
             CAYEAVKI L K      +C+    S+ + K   L ++L+ + S   L+ ++      
Sbjct: 377 PRCAYEAVKILLHKY---DSDCDPELDSNSEGKKDMLRKILNALNSF--LSKEVEATSCA 431

Query: 385 DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HL 443
               A ++  +S+K+  L+ +      + ++ CIIFVER I  +V+   +  +  L+   
Sbjct: 432 VPDGAANIQNLSSKVQLLINVLERCRDTNEMRCIIFVERKITTRVLASLLSSIEVLSPAF 491

Query: 444 TVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLL 478
               L G  +  + +  K Q+ V+ESFR G+V ++
Sbjct: 492 RFQSLAGKNSGSNDMNHKHQQNVVESFRNGEVGII 526


>gi|80979123|gb|ABB54764.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  221 bits (564), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 193/675 (28%), Positives = 319/675 (47%), Gaps = 66/675 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPT 102
           PR YQL++ +   + N I  L TG+GKT +A++ +K  +Q +     NG K+  +F+  T
Sbjct: 1   PRSYQLRLVDHLTKHNGIVYLPTGSGKTFVALLTLKRFSQDMDKRLENGGKR-ALFMCNT 59

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V L  QQ   ++ HT+  V  Y G +GVDEW    W  EI  + VLV T Q+ LD   ++
Sbjct: 60  VELARQQMVAVQRHTNLTVGFYVGEQGVDEWTRGQWSDEIQDHQVLVGTAQVFLDLFTQS 119

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASPVVRKGVSSAM 220
            ++L  V  +++DECHH TG+HPY + M+ F     NK  P+V G++   V+ KG +   
Sbjct: 120 HMTLSSVSVVIMDECHHGTGHHPYHEFMRLFLCAEKNKALPRVVGLSG--VLIKG-NEIK 176

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQSK------FCGSDLK 271
               ++ ELE T    + T+ D  EME   ++    KE    Y   +             
Sbjct: 177 QVVKKLKELEITYRGNIITVSDTEEMENVMLYSTKPKEYLITYPSQERVFLVTQSIQSQI 236

Query: 272 GKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330
            +   +    D  +  ++ S+ L C +D   K  ++++  +D+    L+ L E G+  A 
Sbjct: 237 QQFFATLDLMDIGVQPVRRSKSLQCQRD-PQKKSSIKQLFNDF----LFQLQEYGIYAAS 291

Query: 331 EA-VKICLEKVLK-AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY-S 387
            A + + +E  LK  Q E    +          E++ H++   L        D      +
Sbjct: 292 IAIISLIVEFDLKRRQAETLSLKLMHRTAMSLCEKIRHLLVQKLRDMTDEDDDPDDKVNT 351

Query: 388 KAVDLGYISTKLHELLQLFLSFGKST-------QVLCIIFVERIIAAKVVE----RFVKK 436
           + V L + + K    +Q FL + K+T        + C++FVER    K +      F+  
Sbjct: 352 EEVILSFSTPK----VQRFLQYLKTTFANKDPKDICCLVFVERRYTCKCIYGLLLNFIDS 407

Query: 437 VPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
            P L + LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V 
Sbjct: 408 TPELRNVLTPQFMVGRNSISQDFESVLDRKYQKSAIQQFREGNANLMICSSVLEEGIDVQ 467

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM---LERGNLKQRNKLFDIIRSERS-- 546
            C+YV+  D  KT + Y+Q++GRAR +N+ F+L    L+RG + Q+   +    +E +  
Sbjct: 468 ACNYVLILDPLKTFNMYVQTKGRARSNNASFVLFSSELDRGKISQQIAQYRTAHAEIAEY 527

Query: 547 VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
           + D  L R +PE   +K       + +I E  GA +   S++ L+HRYC+ +P+D +   
Sbjct: 528 LKDRVLERTEPEMYEVKQHFQDVIQPFINEH-GAVLLPSSALILLHRYCQSMPTDAFGFV 586

Query: 606 KP-----------IFKYKSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEAC 653
            P           I     A       + LP N+  + TI      +   +K     +AC
Sbjct: 587 IPWISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLKNTIYSDPMDSVKAAKVSAAFKAC 646

Query: 654 EKLHQVGALNDHLLP 668
           + L+Q+G LN+  LP
Sbjct: 647 KLLYQLGELNERFLP 661



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 109/280 (38%), Gaps = 54/280 (19%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T+    + + MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1191 FLAAITSSSTADVYDMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNL 1250

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL--------RPVPCECGVDTLEVPLDGKFF 1173
                +D  +   I    F PR    P  +SL        R  P E  V      L     
Sbjct: 1251 LYCLSDTDIPKRISTILFTPRYTWLPPSISLPHNVLALWRENP-ELAVMVGPHNLRDLAL 1309

Query: 1174 TQDTKVVVGKPCDMGHR------------------------------WMGSKTIADCAEA 1203
             ++  +V G   D+ +                                +  K IAD  EA
Sbjct: 1310 GEEESMVSGHCSDINYNNFVEGCRANAQSHHAGADFSAEVNFCVGLVTIPDKVIADTLEA 1369

Query: 1204 LIGAYYVGGGLIAALYMMKWLGI-DADLE---VSLVDDCITRASLRSYVPRINEI----- 1254
            L+G      GL  A  M+++  I  AD+      L+D  +  + +R+ V    EI     
Sbjct: 1370 LLGVIVKNYGLQHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANV-NTTEIDGFLI 1428

Query: 1255 --KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
                +E+ +GY F  +  L +A+TH S        CYQ L
Sbjct: 1429 NHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQEL 1468


>gi|80979121|gb|ABB54763.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  221 bits (564), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 193/675 (28%), Positives = 319/675 (47%), Gaps = 66/675 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPT 102
           PR YQL++ +   + N I  L TG+GKT +A++ +K  +Q +     NG K+  +F+  T
Sbjct: 1   PRSYQLRLVDHLTKHNGIVYLPTGSGKTFVALLTLKRFSQDMDKRLENGGKR-ALFMCNT 59

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V L  QQ   ++ HT+  V  Y G +GVDEW    W  EI  + VLV T Q+ LD   ++
Sbjct: 60  VELARQQMVAVQRHTNLTVGFYVGEQGVDEWTRGQWSDEIQDHQVLVGTAQVFLDLFTQS 119

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASPVVRKGVSSAM 220
            ++L  V  +++DECHH TG+HPY + M+ F     NK  P+V G++   V+ KG +   
Sbjct: 120 HMTLSSVSVVIMDECHHGTGHHPYHEFMRLFLCAEKNKALPRVVGLSG--VLIKG-NEIK 176

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQSK------FCGSDLK 271
               ++ ELE T    + T+ D  EME   ++    KE    Y   +             
Sbjct: 177 QVVKKLKELEITYRGNIITVSDTEEMENVMLYSTKPKEYLITYPSQERVFLVTQSIQSQI 236

Query: 272 GKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330
            +   +    D  +  ++ S+ L C +D   K  ++++  +D+    L+ L E G+  A 
Sbjct: 237 QQFFATLDLMDIGVQPVRRSKSLQCQRD-PQKKSSIKQLFNDF----LFQLQEYGIYAAS 291

Query: 331 EA-VKICLEKVLK-AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY-S 387
            A + + +E  LK  Q E    +          E++ H++   L        D      +
Sbjct: 292 IAIISLIVEFDLKRRQAETLSLKLMHRTAMSLCEKIRHLLVQKLRDMTDEDDDPDDKVNT 351

Query: 388 KAVDLGYISTKLHELLQLFLSFGKST-------QVLCIIFVERIIAAKVVE----RFVKK 436
           + V L + + K    +Q FL + K+T        + C++FVER    K +      F+  
Sbjct: 352 EEVILSFSTPK----VQRFLQYLKTTFANKDPKDICCLVFVERRYTCKCIYGLLLNFIDS 407

Query: 437 VPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
            P L + LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V 
Sbjct: 408 TPELRNVLTPQFMVGRNSISQDFESVLDRKYQKSAIQQFREGNANLMICSSVLEEGIDVQ 467

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM---LERGNLKQRNKLFDIIRSERS-- 546
            C+YV+  D  KT + Y+Q++GRAR +N+ F+L    L+RG + Q+   +    +E +  
Sbjct: 468 ACNYVLILDPLKTFNMYVQTKGRARSNNASFVLFSSELDRGKISQQIAQYRTAHAEIAEY 527

Query: 547 VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
           + D  L R +PE   +K       + +I E  GA +   S++ L+HRYC+ +P+D +   
Sbjct: 528 LKDRVLERTEPEMYEVKQHFQDVIQPFINEH-GAVLLPSSALILLHRYCQSMPTDAFGFV 586

Query: 606 KP-----------IFKYKSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEAC 653
            P           I     A       + LP N+  + TI      +   +K     +AC
Sbjct: 587 IPWISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLKNTIYSDPMDSVKAAKVSAAFKAC 646

Query: 654 EKLHQVGALNDHLLP 668
           + L+Q+G LN+  LP
Sbjct: 647 KLLYQLGELNERFLP 661



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 109/280 (38%), Gaps = 54/280 (19%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T+    + + MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1191 FLAAITSSSTADVYDMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNL 1250

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL--------RPVPCECGVDTLEVPLDGKFF 1173
                +D  +   I    F PR    P  +SL        R  P E  V      L     
Sbjct: 1251 LYCLSDTDIPKRISTILFTPRYTWLPPSISLPHNVLALWRENP-ELAVMVGPHNLRDLAL 1309

Query: 1174 TQDTKVVVGKPCDMGHR------------------------------WMGSKTIADCAEA 1203
             ++  +V G   D+ +                                +  K IAD  EA
Sbjct: 1310 GEEESMVSGHCSDINYNNFVEGCRANAQSHHAGADFSAEVNFCVGLVTIPDKVIADTLEA 1369

Query: 1204 LIGAYYVGGGLIAALYMMKWLGI-DADLE---VSLVDDCITRASLRSYVPRINEI----- 1254
            L+G      GL  A  M+++  I  AD+      L+D  +  + +R+ V    EI     
Sbjct: 1370 LLGVIVKNYGLQHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANV-NTTEIDGFLI 1428

Query: 1255 --KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
                +E+ +GY F  +  L +A+TH S        CYQ L
Sbjct: 1429 NHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQEL 1468


>gi|80979129|gb|ABB54767.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 193/675 (28%), Positives = 318/675 (47%), Gaps = 66/675 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPT 102
           PR YQL++ +   + N I  L TG+GKT +A++ +K  +Q +     NG K+  +F+  T
Sbjct: 1   PRSYQLRLVDHLTKHNGIVYLPTGSGKTFVALLTLKRFSQDMDKRLENGGKR-ALFMCNT 59

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V L  QQ   ++ HT+  V  Y G +GVDEW    W  EI  + VLV T Q+ LD   ++
Sbjct: 60  VELARQQXVAVQRHTNLTVGFYVGDQGVDEWTRGQWSDEIQDHQVLVGTAQVFLDLFTQS 119

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASPVVRKGVSSAM 220
            ++L  V  +++DECHH TG+HPY + M+ F     NK  P+V G++   V+ KG +   
Sbjct: 120 HMTLSSVSVVIMDECHHGTGHHPYHEFMRLFLCAEKNKALPRVVGLSG--VLIKG-NEIK 176

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQSK------FCGSDLK 271
               ++ ELE T    + T+ D  EME   ++    KE    Y   +             
Sbjct: 177 QVVKKLKELEITYRGNIITVSDTEEMENVMLYSTKPKEYLITYPSQERVFLVTQSIQSQI 236

Query: 272 GKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330
            +   +    D  +  ++ S+ L C +D   K  ++++  +D+    L+ L E G+  A 
Sbjct: 237 QQFFATLDLMDIGVQPVRRSKSLQCQRD-PQKKSSIKQLFNDF----LFQLQEYGIYAAS 291

Query: 331 EA-VKICLEKVLK-AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY-S 387
            A + + +E  LK  Q E    +          E++ H++   L        D      +
Sbjct: 292 IAIISLIVEFDLKRRQAETLSLKLMHRTAMSLCEKIRHLLVQKLRDMTDEDDDPDDKVNT 351

Query: 388 KAVDLGYISTKLHELLQLFLSFGKST-------QVLCIIFVERIIAAKVVE----RFVKK 436
           + V L + + K    +Q FL + K+T        + C++FVER    K +      F+  
Sbjct: 352 EEVILSFSTPK----VQRFLQYLKTTFANKDPKDICCLVFVERRYTCKCIYGLLLNFIDS 407

Query: 437 VPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
            P L + LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V 
Sbjct: 408 TPELRNVLTPQFMVGRNSISQDFESVLDRKYQKSAIQQFREGNANLMICSSVLEEGIDVQ 467

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM---LERGNLKQRNKLFDIIRSE--RS 546
            C+YV+  D  KT + Y+Q++GRAR +N+ F+L    L+RG + Q+   +    +E    
Sbjct: 468 ACNYVLILDPLKTFNMYVQTKGRARSNNASFVLFSSELDRGKISQQIAQYRTAHAEIAEY 527

Query: 547 VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
           + D  L R +PE   +K       + +I E  GA +   S++ L+HRYC+ +P+D +   
Sbjct: 528 LKDRVLERTEPEMYEVKQHFQDVIQPFINEH-GAVLLPSSALILLHRYCQSMPTDAFGFV 586

Query: 606 KP-----------IFKYKSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEAC 653
            P           I     A       + LP N+  + TI      +   +K     +AC
Sbjct: 587 IPWISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLKNTIYSDPMDSVKAAKVSAAFKAC 646

Query: 654 EKLHQVGALNDHLLP 668
           + L+Q+G LN+  LP
Sbjct: 647 KLLYQLGELNERFLP 661



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 108/279 (38%), Gaps = 52/279 (18%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T+    + + MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1191 FLAAITSSSTADVYDMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNL 1250

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVP-------LDGKFFT 1174
                +D  +   I    F PR    P  +SL         +  E+        L      
Sbjct: 1251 LYCLSDTDIPKRISTILFTPRYTWLPPSISLPHNVLALWRENPELAXMVGPHNLRDLALG 1310

Query: 1175 QDTKVVVGKPCDMGHRW------------------------------MGSKTIADCAEAL 1204
            ++  +V G   D+ +                                +  K IAD  EAL
Sbjct: 1311 EEESMVSGHCSDINYNXFVEGCRANAQSHHAGADFSAEVNFCVGLVTIPDKVIADTLEAL 1370

Query: 1205 IGAYYVGGGLIAALYMMKWLGI-DADLE---VSLVDDCITRASLRSYVPRINEI------ 1254
            +G      GL  A  M+++  I  AD+      L+D  +  + +R+ V    EI      
Sbjct: 1371 LGVIVKNYGLQHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANV-NTTEIDGFLIN 1429

Query: 1255 -KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
               +E+ +GY F  +  L +A+TH S        CYQ L
Sbjct: 1430 HHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQEL 1468


>gi|80979119|gb|ABB54762.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 194/675 (28%), Positives = 319/675 (47%), Gaps = 66/675 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPT 102
           PR YQL++ +   + N I  L TG+GKT +A++ +K  +Q +     NG K+  +F+  T
Sbjct: 1   PRSYQLRLVDHLTKHNGIVYLPTGSGKTFVALLTLKRFSQDMDKRLENGGKR-ALFMCNT 59

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V L  QQ   ++ HT+  V  Y G +GVDEW    W  EI  + VLV T Q+ LD   ++
Sbjct: 60  VELARQQMVAVQRHTNLTVGFYVGDQGVDEWTRGQWSDEIQDHQVLVGTAQVFLDLFTQS 119

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASPVVRKGVSSAM 220
            ++L  V  +++DECHH TG+HPY + M+ F     NK  P+V G+  S V+ KG +   
Sbjct: 120 HMTLSSVSVVIMDECHHGTGHHPYHEFMRLFLCADKNKALPRVVGL--SGVLIKG-NEIK 176

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQSK------FCGSDLK 271
               ++ ELE T    + T+ D  EME   ++    KE    Y   +             
Sbjct: 177 QVVKKLKELEITYRGNIITVSDTEEMENVMLYSTKPKEYLITYPSQERVFLVTQSIQSQI 236

Query: 272 GKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330
            +   +    D  +  ++ S+ L C +D   K  ++++  +D+    L+ L E G+  A 
Sbjct: 237 QQFFATLDLMDIGVQPVRRSKSLQCQRD-PQKKSSIKQLFNDF----LFQLQEYGIYAAS 291

Query: 331 EA-VKICLEKVLK-AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY-S 387
            A + + +E  LK  Q E    +          E++ H++   L        D      +
Sbjct: 292 IAIISLIVEFDLKRRQAETLSLKLMHRTAMSLCEKIRHLLVQKLRDMTDEDDDPDDKVNT 351

Query: 388 KAVDLGYISTKLHELLQLFLSFGKST-------QVLCIIFVERIIAAKVVE----RFVKK 436
           + V L + + K    +Q FL + K+T        + C++FVER    K +      F+  
Sbjct: 352 EEVILSFSTPK----VQRFLQYLKTTFANKDPKDICCLVFVERRYTCKCIYGLLLNFIDS 407

Query: 437 VPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
            P L + LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V 
Sbjct: 408 TPELRNVLTPQFMVGRNSISQDFESVLDRKYQKSAIQQFREGNANLMICSSVLEEGIDVQ 467

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM---LERGNLKQRNKLFDIIRSERS-- 546
            C+YV+  D  KT + Y+Q++GRAR +N+ F+L    L+RG + Q+   +    +E +  
Sbjct: 468 ACNYVLILDPLKTFNMYVQTKGRARSNNASFVLFSSELDRGKISQQIAQYRTAHAEIAEY 527

Query: 547 VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
           + D  L R +PE   +K       + +I E  GA +   S++ L+HRYC+ +P+D +   
Sbjct: 528 LKDRVLERTEPEMYEVKQHFQDVIQPFINEH-GAVLLPSSALILLHRYCQSMPTDAFGFV 586

Query: 606 KP-----------IFKYKSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEAC 653
            P           I     A       + LP N+  + TI      +   +K     +AC
Sbjct: 587 IPWISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLKNTIYSDPMDSVKAAKVSAAFKAC 646

Query: 654 EKLHQVGALNDHLLP 668
           + L+Q+G LN+  LP
Sbjct: 647 KLLYQLGELNERFLP 661



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 109/280 (38%), Gaps = 54/280 (19%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T+    + + MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1191 FLAAITSSSTADVYDMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNL 1250

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL--------RPVPCECGVDTLEVPLDGKFF 1173
                +D  +   I    F PR    P  +SL        R  P E  V      L     
Sbjct: 1251 LYCLSDTDIPKRISTILFTPRYTWLPPSISLPHNVLALWRENP-ELAVMVGPHNLRDLAL 1309

Query: 1174 TQDTKVVVGKPCDMGHR------------------------------WMGSKTIADCAEA 1203
             ++  +V G   D+ +                                +  K IAD  EA
Sbjct: 1310 GEEESMVSGHCSDINYNNFVEGCRANAQSHHAGADFSAEVNFCVGLVTIPDKVIADTLEA 1369

Query: 1204 LIGAYYVGGGLIAALYMMKWLGI-DADLE---VSLVDDCITRASLRSYVPRINEI----- 1254
            L+G      GL  A  M+++  I  AD+      L+D  +  + +R+ V    EI     
Sbjct: 1370 LLGVIVKNYGLQHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANV-NTTEIDGFLI 1428

Query: 1255 --KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
                +E+ +GY F  +  L +A+TH S        CYQ L
Sbjct: 1429 NHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQEL 1468


>gi|195487840|ref|XP_002092062.1| Dcr-2 [Drosophila yakuba]
 gi|194178163|gb|EDW91774.1| Dcr-2 [Drosophila yakuba]
          Length = 1730

 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 193/675 (28%), Positives = 319/675 (47%), Gaps = 66/675 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPT 102
           PR YQL++ +   + N I  L TG+GKT +A++ +K  +Q +     NG K+  +F+  T
Sbjct: 12  PRSYQLRLVDHLTKHNGIVYLPTGSGKTFVALLTLKRFSQDMDKRLENGGKR-ALFMCNT 70

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V L  QQ   ++ HT+  V  Y G +GVDEW    W  EI  + VLV T Q+ LD   ++
Sbjct: 71  VELARQQMVAVQRHTNLTVGFYVGDQGVDEWTRGQWSDEIQDHQVLVGTAQVFLDLFTQS 130

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASPVVRKGVSSAM 220
            ++L  V  +++DECHH TG+HPY + M+ F     NK  P+V G++   V+ KG +   
Sbjct: 131 HMTLSSVSVVIMDECHHGTGHHPYHEFMRLFLCAEKNKALPRVVGLSG--VLIKG-NEIK 187

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQSK------FCGSDLK 271
               ++ ELE T    + T+ D  EME   ++    KE    Y   +             
Sbjct: 188 QVVKKLKELEITYRGNIITVSDTEEMENVMLYSTKPKEYLITYPSQERVFLVTQSIQSQI 247

Query: 272 GKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330
            +   +    D  +  ++ S+ L C +D   K  ++++  +D+    L+ L E G+  A 
Sbjct: 248 QQFFATLDLMDIGVQPVRRSKSLQCQRD-PQKKSSIKQLFNDF----LFQLQEYGIYAAS 302

Query: 331 EA-VKICLEKVLK-AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY-S 387
            A + + +E  LK  Q E    +          E++ H++   L        D      +
Sbjct: 303 IAIISLIVEFDLKRRQAETLSLKLMHRTAMSLCEKIRHLLVQKLRDMTDEDDDPDDKVNT 362

Query: 388 KAVDLGYISTKLHELLQLFLSFGKST-------QVLCIIFVERIIAAKVVE----RFVKK 436
           + V L + + K    +Q FL + K+T        + C++FVER    K +      F+  
Sbjct: 363 EEVILSFSTPK----VQRFLQYLKTTFANKDPKDICCLVFVERRYTCKCIYGLLLNFIDS 418

Query: 437 VPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
            P L + LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V 
Sbjct: 419 TPELRNVLTPQFMVGRNSISQDFESVLDRKYQKSAIQQFREGNANLMICSSVLEEGIDVQ 478

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM---LERGNLKQRNKLFDIIRSERS-- 546
            C+YV+  D  KT + Y+Q++GRAR +N+ F+L    L+RG + Q+   +    +E +  
Sbjct: 479 ACNYVLILDPLKTFNMYVQTKGRARSNNASFVLFSSELDRGKISQQIAQYRTAHAEIAEY 538

Query: 547 VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
           + D  L R +PE   +K       + +I E  GA +   S++ L+HRYC+ +P+D +   
Sbjct: 539 LKDRVLERTEPEMYEVKQHFQDVIQPFINEH-GAVLLPSSALILLHRYCQSMPTDAFGFV 597

Query: 606 KP-----------IFKYKSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEAC 653
            P           I     A       + LP N+  + TI      +   +K     +AC
Sbjct: 598 IPWISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLKNTIYSDPMDSVKAAKVSAAFKAC 657

Query: 654 EKLHQVGALNDHLLP 668
           + L+Q+G LN+  LP
Sbjct: 658 KLLYQLGELNERFLP 672



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 109/280 (38%), Gaps = 54/280 (19%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T+    + + MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1202 FLAAITSSSTADVYDMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNL 1261

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL--------RPVPCECGVDTLEVPLDGKFF 1173
                +D  +   I    F PR    P  +SL        R  P E  V      L     
Sbjct: 1262 LYCLSDTDIPKRISTILFTPRYTWLPPSISLPHNVLALWRENP-ELAVMVGPHNLRDLAL 1320

Query: 1174 TQDTKVVVGKPCDMGHR------------------------------WMGSKTIADCAEA 1203
             ++  +V G   D+ +                                +  K IAD  EA
Sbjct: 1321 GEEESMVSGHCSDINYNNFVEGCRANAQSHHAGADFSAEVNFCVGLVTIPDKVIADTLEA 1380

Query: 1204 LIGAYYVGGGLIAALYMMKWLGI-DADLE---VSLVDDCITRASLRSYVPRINEI----- 1254
            L+G      GL  A  M+++  I  AD+      L+D  +  + +R+ V    EI     
Sbjct: 1381 LLGVIVKNYGLQHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANV-NTTEIDGFLI 1439

Query: 1255 --KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
                +E+ +GY F  +  L +A+TH S        CYQ L
Sbjct: 1440 NHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQEL 1479


>gi|194880776|ref|XP_001974538.1| GG21041 [Drosophila erecta]
 gi|190657725|gb|EDV54938.1| GG21041 [Drosophila erecta]
          Length = 1729

 Score =  221 bits (563), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 274/1096 (25%), Positives = 455/1096 (41%), Gaps = 163/1096 (14%)

Query: 46   PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPT 102
            PR YQ ++ +   + N I  L TG+GKT +A++ IK  +Q +     NG K+  +F+  T
Sbjct: 12   PRNYQNRLVDHLTKHNGIVYLPTGSGKTFVAILTIKRFSQDMDKPLENGGKR-ALFMCNT 70

Query: 103  VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
            V L  QQ   ++ +T+F+V  Y G +GVDEW    W  EI  N VLV T Q+ LD   + 
Sbjct: 71   VELARQQAVALKRYTNFKVGFYVGEQGVDEWTRGQWSDEIRNNQVLVGTAQVFLDLFTQM 130

Query: 163  FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASPVVRKGVSSAM 220
             L+L  V  +++DECHH TG HPY + M+ F    ++K  P+V G+T   V+ KG +   
Sbjct: 131  HLALSSVSIVIMDECHHGTGRHPYHEFMRLFLCAENHKALPRVVGLTG--VLLKG-NEIN 187

Query: 221  DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
                ++ ELE+T    + T+ D  EME   ++    KE    Y   +     +   +   
Sbjct: 188  QVAKKLKELETTYRGNIITVSDTEEMENVMLYSTKPKEYLITYPSQERVFM-VTQSINSQ 246

Query: 278  WSKFDASLSKL--------QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
             ++F A+L  +        +   L   +D   K  ++++  +D+    L+ L E G+  A
Sbjct: 247  ITQFFATLDLMDIGVQPVRRSKSLQSCRD-PQKKSSVKQLFNDF----LFQLQEYGIYAA 301

Query: 330  YEA-VKICLEKVLK-AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY- 386
              A + + +E  LK  Q E +  +          E++ H++   L        D      
Sbjct: 302  SIAIISLIVEFDLKRRQAETQSLKLMHRTALSLCEKIRHILVQKLRDMTDEDDDPDDKVN 361

Query: 387  SKAVDLGYISTKLHELLQ-LFLSFGKSTQ--VLCIIFVERIIAAKVVE----RFVKKVPF 439
            ++ V L + + K+   LQ L  +F       + C++FVER    K +      F+   P 
Sbjct: 362  TEDVILSFSTPKMQRFLQYLKKTFANKDHKDISCLVFVERRYTCKCIYGLLLNFIDSTPE 421

Query: 440  LTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
            L + LT  ++ G +T S D    +  K QK  ++ FR G+ NL+  + V+EEG+ V  C+
Sbjct: 422  LRNVLTPQFMVGRNTISQDFEGVMDRKNQKAAIQKFREGEANLMICSSVLEEGIDVQACN 481

Query: 495  YVIRFDLPKTVSSYIQSRGRARQHNSQFILM---LERGNLKQRNKLFDIIRSE--RSVTD 549
            YV+  D  KT + Y+Q++GRAR  N+ F+L    LE   + ++   +    +E    +  
Sbjct: 482  YVLILDPLKTFNMYVQTKGRARSPNASFVLFASELEETKISKQISQYRTAHAEIAEYLKY 541

Query: 550  TALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPI 608
              L R +PE   +K       + +I    GA +   +++ L+HRYC+ +P+D +    P 
Sbjct: 542  RVLERFEPEMYEVKQHFQDVIQPFI-NKHGAVLLPSAALILLHRYCQTMPTDAFGFVIPW 600

Query: 609  FKYKSAEE-----------AYECELTLPSNAPFQTIV-GPTSRNKNLSKQLVCLEACEKL 656
                  +E            Y   + LP N+  + I+      N   +K      AC+ L
Sbjct: 601  INLLQEDECIRLYGDCARSKYVVSIKLPLNSRLKDIIYSDPMDNAKEAKMSAAFNACKLL 660

Query: 657  HQVGALNDHLLPSVEEPSENNLISKKNESLPGAG----TTKRKELHGTTP---------I 703
            + +G LN+  LP   +     +     E     G      +RKE   T P          
Sbjct: 661  YNLGELNERFLPITMKERVAAIADVHFEHWKKYGDDVTAIERKENVKTVPNYRTNCPAEF 720

Query: 704  RALSGRWGEKCGVILHAYKFNF-----ACSIVTEIY------SGFVLLIESELDNDVGNF 752
                 R GE C    +AY+        +C     +Y        + +L+ + L       
Sbjct: 721  YDARPRVGELC----YAYEIFLEPQFESCDYTEHMYINLQTPRNYAILLRNMLPRLA--- 773

Query: 753  ELELYLVSKTVKATVSSSGQ----VHLDADQMSKAKCFQELFFNGL---FGKLFVKSKSS 805
              E+ L S   K  V  + +    V  + +Q+     F  + F  L   +   FV  + S
Sbjct: 774  --EMPLFSNQGKLLVRVANEPLRVVIENTEQLELLHQFHGMVFRDLLKIWQPFFVLDRRS 831

Query: 806  GSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFL 865
                     + NS       YL++PL +     D   RI+W  +              F 
Sbjct: 832  ---------KENS-------YLVVPLLLG---ADQQKRIDWPLVT------------KFQ 860

Query: 866  GAAQCNNNGGNSSPCRTSPCKTGCHGKDVIH-LANGSVDAKNLKDMVVLAIHTGRIYSIV 924
               Q   +       +T+P      GK V    AN        K MVV  +H        
Sbjct: 861  RLPQAEKSSVLQRKQQTAPRPEDFEGKIVTQWYANFET-----KRMVVTKVHR------- 908

Query: 925  EIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVL---IHPGQPLLRLKQSHNPHNLLVN 981
            E+   S  E       +   KT+  +   KYG  +   +H  + L+ +++  +  N  V 
Sbjct: 909  ELTPLSFMEK------NHQDKTYYEFTMSKYGNHIGDVVHKDKFLIEVRELTDQLNFYVQ 962

Query: 982  FNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLA 1041
             N G  S +         K +  + + PEL    + P  +   L  LPS++ R+  L+ A
Sbjct: 963  -NRGKSSAQS--------KARAKIILIPELCFNYEFPGDLWLKLIFLPSILNRMHFLLHA 1013

Query: 1042 SQLREEINCHSRNFHI 1057
              LR+  N +  N H+
Sbjct: 1014 EALRKRFNTY-LNLHM 1028



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 45/91 (49%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T+ G  + + MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1202 FLAAITSSGTADVYDMERLEILGDSFLKLSATLYLANKYSDWNEGSLTQVKSMLVSNRNL 1261

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL 1152
                 D  +   I    F PR    P  +SL
Sbjct: 1262 LYCLRDTDIPKKISTVLFTPRYTWLPPSISL 1292


>gi|80979127|gb|ABB54766.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  221 bits (563), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 193/675 (28%), Positives = 319/675 (47%), Gaps = 66/675 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPT 102
           PR YQL++ +   + N I  L TG+GKT +A++ +K  +Q +     NG K+  +F+  T
Sbjct: 1   PRSYQLRLVDHLTKHNGIVYLPTGSGKTFVALLTLKRFSQDMDKRLENGGKR-ALFMCNT 59

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V L  QQ   ++ HT+  V  Y G +GVDEW    W  EI  + VLV T Q+ LD   ++
Sbjct: 60  VELARQQMVAVQRHTNLTVGFYVGDQGVDEWTRGQWSDEIQDHQVLVGTAQVFLDLFTQS 119

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASPVVRKGVSSAM 220
            ++L  V  +++DECHH TG+HPY + M+ F     NK  P+V G++   V+ KG +   
Sbjct: 120 HMTLSSVSVVIMDECHHGTGHHPYHEFMRLFLCAEKNKALPRVVGLSG--VLIKG-NEIK 176

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQSK------FCGSDLK 271
               ++ ELE T    + T+ D  EME   ++    KE    Y   +             
Sbjct: 177 QVVKKLKELEITYRGNIITVSDTEEMENVMLYSTKPKEYLITYPSQERVFLVTQSIQSQI 236

Query: 272 GKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330
            +   +    D  +  ++ S+ L C +D   K  ++++  +D+    L+ L E G+  A 
Sbjct: 237 QQFFATLDLMDIGVQPVRRSKSLQCQRD-PQKKSSIKQLFNDF----LFQLQEYGIYAAS 291

Query: 331 EA-VKICLEKVLK-AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY-S 387
            A + + +E  LK  Q E    +          E++ H++   L        D      +
Sbjct: 292 IAIISLIVEFDLKRRQAETLSLKLMHRTAMSLCEKIRHLLVQKLRDMTDEDDDPDDKVNT 351

Query: 388 KAVDLGYISTKLHELLQLFLSFGKST-------QVLCIIFVERIIAAKVVE----RFVKK 436
           + V L + + K    +Q FL + K+T        + C++FVER    K +      F+  
Sbjct: 352 EEVILSFSTPK----VQRFLQYLKTTFANKDPKDICCLVFVERRYTCKCIYGLLLNFIDS 407

Query: 437 VPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
            P L + LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V 
Sbjct: 408 TPELRNVLTPQFMVGRNSISQDFESVLDRKYQKSAIQQFREGNANLMICSSVLEEGIDVQ 467

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM---LERGNLKQRNKLFDIIRSERS-- 546
            C+YV+  D  KT + Y+Q++GRAR +N+ F+L    L+RG + Q+   +    +E +  
Sbjct: 468 ACNYVLILDPLKTFNMYVQTKGRARSNNASFVLFSSELDRGKISQQIAQYRTAHAEIAEY 527

Query: 547 VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
           + D  L R +PE   +K       + +I E  GA +   S++ L+HRYC+ +P+D +   
Sbjct: 528 LKDRVLERTEPEMYEVKQHFQDVIQPFINEH-GAVLLPSSALILLHRYCQSMPTDAFGFV 586

Query: 606 KP-----------IFKYKSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEAC 653
            P           I     A       + LP N+  + TI      +   +K     +AC
Sbjct: 587 IPWISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLKNTIYSDPMDSVKAAKVSAAFKAC 646

Query: 654 EKLHQVGALNDHLLP 668
           + L+Q+G LN+  LP
Sbjct: 647 KLLYQLGELNERFLP 661



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 109/280 (38%), Gaps = 54/280 (19%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T+    + + MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1191 FLAAITSSSTADVYDMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNL 1250

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL--------RPVPCECGVDTLEVPLDGKFF 1173
                +D  +   I    F PR    P  +SL        R  P E  V      L     
Sbjct: 1251 LYCLSDTDIPKRISTILFTPRYTWLPPSISLPHNVLALWRENP-ELAVMVGPHNLRDLAL 1309

Query: 1174 TQDTKVVVGKPCDMGHR------------------------------WMGSKTIADCAEA 1203
             ++  +V G   D+ +                                +  K IAD  EA
Sbjct: 1310 GEEESMVSGHCSDINYNNFVEGCRANAQSHHAGADFSAEVNFCVGLVTIPDKVIADTLEA 1369

Query: 1204 LIGAYYVGGGLIAALYMMKWLGI-DADLE---VSLVDDCITRASLRSYVPRINEI----- 1254
            L+G      GL  A  M+++  I  AD+      L+D  +  + +R+ V    EI     
Sbjct: 1370 LLGVIVKNYGLQHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANV-NTTEIDGFLI 1428

Query: 1255 --KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
                +E+ +GY F  +  L +A+TH S        CYQ L
Sbjct: 1429 NHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQEL 1468


>gi|302318908|ref|NP_001180543.1| dicer-2 [Bombyx mori]
 gi|300669733|dbj|BAJ11655.1| DICER-2 [Bombyx mori]
          Length = 1677

 Score =  221 bits (563), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 203/721 (28%), Positives = 337/721 (46%), Gaps = 87/721 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS---NGFKKLIIFLAPTV 103
           R YQ  + E+A  +NTI  L TG+GKT IA  LIK     +K     G K+   FL  TV
Sbjct: 15  RPYQAILEEIASSKNTIIHLPTGSGKTFIAQRLIKKFRNQLKKPWGEGGKR-SFFLVNTV 73

Query: 104 HLVHQQYDVIRVHTDFE-VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
            LV+QQ +VI +    + V  Y    GVD W    W  E+ +N V+VMT QIL D L  A
Sbjct: 74  PLVNQQKNVIEMMCPVDGVGAYSSEDGVDYWKKADWDSELARNQVIVMTSQILSDMLTHA 133

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMD 221
           ++ ++ +  I+ DECHHA  +HP   IMK F + K+  +P+V G+TA+  +  G  S   
Sbjct: 134 YIRIEDINLIIFDECHHAVEDHPMRVIMKHFLNCKAHEQPRVLGLTAT--LLNGNVSISK 191

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS-----DLKGKLE- 275
            E  + +LE+T  + + T++D  E+  +  + +E  +++ + +   +      L   L+ 
Sbjct: 192 IEETLKQLENTFHATIATVDDLGEVMTYSTNPQEFIQYFRKPQMSEAAKEAISLLNTLQN 251

Query: 276 -VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGL------IC 328
            V   K   SL      +  C +D+ +    + K + +    ++  L+E+GL      I 
Sbjct: 252 LVMSVKLPVSLPSKDFKKTPCQRDISNDPNKIVKAVKNLIVGMITNLEEMGLYGGSLGIL 311

Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
           AY  +   L++    +EE  +Y             + H   + + L D +  + G+D   
Sbjct: 312 AYIVLLERLKRKASTKEENLLYSTV----------ITHSTEARMILLDAMENETGYDKI- 360

Query: 389 AVDLGYISTKLHELLQL--------------FLSFGKSTQVLC-IIFVERIIAAKVVERF 433
              + + S K+ +L+ L               L    S + LC IIF ++   +K++   
Sbjct: 361 ---IKHSSEKILQLIDLLKEYNPLILEKPGELLKVNHSRKPLCGIIFTKQRFTSKILYNI 417

Query: 434 V----KKVP----FLTHLTVAYLT----GSTTSVDALTPKVQKEVLESFRGGKVNLLFAT 481
           +    K  P    FL H  V   +     ST     L    QK +L  F  G +N L +T
Sbjct: 418 LMDLKKARPDEFEFLKHDFVVGFSINPFKSTREEHYLKKSSQKAIL-GFNNGDLNCLIST 476

Query: 482 DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDII 541
            VIEEG+ +P C+ V+R+D P    SYIQS+GRAR   + F+++++  + +     +D  
Sbjct: 477 SVIEEGLDIPQCALVVRYDAPTEYRSYIQSKGRARSSEASFVILVDIEDKQSFLIKYDAF 536

Query: 542 -RSERSVTDTALSRD----PEACFLKACTYVKTKSYIVE-STGASVTTDSSVNLIHRYCE 595
            ++E  + +  +  D    P    +    Y   +    E S G  + + S+++L+ RYC 
Sbjct: 537 QKTEERIRNLIVGDDSRAAPTTQDIHENLYDDDEVPPYETSNGNILYSVSAISLLSRYCS 596

Query: 596 MLPSDKYYTPKPIFKYKSAEEAYECELT--LPSNAPF-QTIVGPTSRNKNLSKQLVCLEA 652
           +LP D++ T  P++  +  E   + ++T  LP  +P  + I G    N   +K+   L+A
Sbjct: 597 ILPHDQFTTITPVWLQEVVENGAKKQVTVILPIGSPVKEEIKGDPYSNTKTAKRSAALKA 656

Query: 653 CEKLHQVGALND-HLLP--SVEEPSENNLI------------SKKNESLPGAGTTKRKEL 697
           C KLH++G L+   LLP    E   E + I            ++  E++P  G+ KRK  
Sbjct: 657 CIKLHELGELHPLTLLPYKYAEVDYERDDIRGCFPNWTKDCETEIKENVPKPGSKKRKRK 716

Query: 698 H 698
           H
Sbjct: 717 H 717



 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 134/308 (43%), Gaps = 57/308 (18%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            +L ALTT+   ++F +ER E LGDS LK+A S +L   +P  +EGQL+  +   + N  L
Sbjct: 1191 VLAALTTINSNDTFDLERPETLGDSFLKFAASLYLHHKFPNMNEGQLTNIKGKLISNRNL 1250

Query: 1122 HKLGTDRKLQGYIRDSAFDPRR-WVAPG------------QLSLRPVPCECGVDTLEVPL 1168
            +  G    L G ++   F PR  ++ PG            Q  +RP        T E  +
Sbjct: 1251 YYAGAKFNLGGRMKVEQFSPRSDFLVPGFFAPPKLEEFIEQRQIRPTFLIGIQFTEEEVM 1310

Query: 1169 DGKFFTQDTKVVVGK------------------PCDMGHRWMGSKTIADCAEALIGAYYV 1210
             G+   +  + V+                     C +  + +  K+IAD  EALIG Y +
Sbjct: 1311 TGELSEESWESVMNNFQNGIAEAEPEGCAQNSMQCYVHSQAVADKSIADSVEALIGTYLL 1370

Query: 1211 GGGLIAALYMMKWLGI------DADL-----EVSLVDDCITRASLRSYVPRINEIKDIES 1259
             GG++AA+ +++W+ +       AD+     +  L  +  T A +   +   N   D+E 
Sbjct: 1371 SGGILAAVKLLEWMEVFPPQDNFADMLHKPVQTPLSKNLATEADIDFLLN--NSRTDVEK 1428

Query: 1260 KIGYEFTVKFLLQEAITHASVQEFYCYQNL---YKHLQHCST-----LLLSQITEYVKSF 1311
             + Y F     L  A++H+S    Y    L   Y+ L+         L+ S I E  +  
Sbjct: 1429 ILNYTFKDSTFLLNALSHSS----YIRNRLTSSYERLEFLGDAIIDFLVTSHIFENCREL 1484

Query: 1312 PKPGETTD 1319
             KPGE TD
Sbjct: 1485 -KPGEMTD 1491


>gi|80979117|gb|ABB54761.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  221 bits (563), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 191/679 (28%), Positives = 321/679 (47%), Gaps = 74/679 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPT 102
           PR YQL++ +   + N I  L TG+GKT +A++ +K  +Q +     NG K+  +F+  T
Sbjct: 1   PRSYQLRLVDHLTKHNGIVYLPTGSGKTFVALLTLKRFSQDMDKRLENGGKR-ALFMCNT 59

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V L  QQ   ++ HT+  V  Y G +GVDEW    W  EI  + VLV T Q+ LD   ++
Sbjct: 60  VELARQQMVAVQRHTNLTVGFYVGDQGVDEWTRGQWSDEIQDHQVLVGTAQVFLDLFTQS 119

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASPVVRKGVSSAM 220
            ++L  V  +++DECHH TG+HPY + M+ F     NK  P+V G++   V+ KG +   
Sbjct: 120 HMTLSSVSVVIMDECHHGTGHHPYHEFMRLFLCAEKNKALPRVVGLSG--VLIKG-NEIK 176

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQSK------FCGSDLK 271
               ++ ELE T    + T+ D  EME   ++    KE    Y   +             
Sbjct: 177 QVVKKLKELEITYRGNIITVSDTEEMENVMLYSTKPKEYLITYPSQERVFLVTQSIQSQI 236

Query: 272 GKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330
            +   +    D  +  ++ S+ L C +D   K  ++++  +D+    L+ L E G+  A 
Sbjct: 237 QQFFATLDLMDIGVQPVRRSKSLQCQRD-PQKKSSIKQLFNDF----LFQLQEYGIYAAS 291

Query: 331 EAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF 384
            A+   + +    + + E      ++R +   C    E++ H++   L        D   
Sbjct: 292 IAIISLIAEFDLKRRQAETLSLKLMHRTAMSLC----EKIRHLLVQKLRDMTDEDDDPDD 347

Query: 385 DY-SKAVDLGYISTKLHELLQLFLSFGKST-------QVLCIIFVERIIAAKVVE----R 432
              ++ V L + + K    +Q FL + K+T        + C++FVER    K +      
Sbjct: 348 KVNTEEVILSFSTPK----VQRFLQYLKTTFANKDPKDICCLVFVERRYTCKCIYGLLLN 403

Query: 433 FVKKVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEG 487
           F+   P L + LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG
Sbjct: 404 FIDSTPELRNVLTPQFMVGRNSISQDFESVLDRKYQKSAIQQFREGNANLMICSSVLEEG 463

Query: 488 MHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM---LERGNLKQRNKLFDIIRSE 544
           + V  C+YV+  D  KT + Y+Q++GRAR +N+ F+L    L+RG + Q+   +    +E
Sbjct: 464 IDVQACNYVLILDPLKTFNMYVQTKGRARSNNASFVLFSSELDRGKISQQIAQYRTAHAE 523

Query: 545 RS--VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
            +  + D  L R +PE   +K       + +I E  GA +   S++ L+HRYC+ +P+D 
Sbjct: 524 IAEYLKDRVLERTEPEMYEVKQHFQDVIQPFINEH-GAVLLPSSALILLHRYCQSMPTDA 582

Query: 602 YYTPKP-----------IFKYKSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVC 649
           +    P           I     A       + LP N+  + TI      +   +K    
Sbjct: 583 FGFVIPWISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLKNTIYSDPMDSVKAAKVSAA 642

Query: 650 LEACEKLHQVGALNDHLLP 668
            +AC+ L+Q+G LN+  LP
Sbjct: 643 FKACKLLYQLGELNERFLP 661



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 109/280 (38%), Gaps = 54/280 (19%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T+    + + MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1191 FLAAITSSSTADVYDMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNL 1250

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL--------RPVPCECGVDTLEVPLDGKFF 1173
                +D  +   I    F PR    P  +SL        R  P E  V      L     
Sbjct: 1251 LYCLSDTDIPKRISTILFTPRYTWLPPSISLPHNVLALWRENP-ELAVMVGPHNLRDLAL 1309

Query: 1174 TQDTKVVVGKPCDMGHR------------------------------WMGSKTIADCAEA 1203
             ++  +V G   D+ +                                +  K IAD  EA
Sbjct: 1310 GEEESMVSGHCSDINYNNFVEGCRANAQSHHAGADFSAEVNFCVGLVTIPDKVIADTLEA 1369

Query: 1204 LIGAYYVGGGLIAALYMMKWLGI-DADLE---VSLVDDCITRASLRSYVPRINEI----- 1254
            L+G      GL  A  M+++  I  AD+      L+D  +  + +R+ V    EI     
Sbjct: 1370 LLGVIVKNYGLQHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANV-NTTEIDGFLI 1428

Query: 1255 --KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
                +E+ +GY F  +  L +A+TH S        CYQ L
Sbjct: 1429 NHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQEL 1468


>gi|312069719|ref|XP_003137813.1| hypothetical protein LOAG_02227 [Loa loa]
 gi|307767024|gb|EFO26258.1| hypothetical protein LOAG_02227 [Loa loa]
          Length = 1928

 Score =  220 bits (561), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 205/712 (28%), Positives = 338/712 (47%), Gaps = 75/712 (10%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI----KSNGFKKLIIFL 99
           F PR YQ+++ + A +RN I  L TG+GKT IAV+LIK+    +    KS G  K   FL
Sbjct: 13  FTPRDYQVELLDKACKRNIIVPLGTGSGKTFIAVLLIKEYTSKLVIPWKSGG--KRAFFL 70

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQILLDA 158
              V LV QQ   I  HT   V + +G    D W     +   I  ++V V+T QI LD 
Sbjct: 71  VDKVSLVGQQAAHIEHHTTLNVGKMHGHLNQDIWSEPAKFDAFIALHEVTVLTAQIFLDL 130

Query: 159 LRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEFYHKSD-NKPKVFGMTASPVVRKGV 216
           L   F ++     I+ DECHH  G+ HPY  IM  +   ++ ++P++ G+TAS +  K  
Sbjct: 131 LDHGFFNMSNAAVIIFDECHHVLGSKHPYRLIMHRYGQLTEVDRPRILGLTASLISSKIP 190

Query: 217 SSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE---SCRFYDQSKFCGSDLKGK 273
            +++  E  + +LE  + S + T  D   +  +    KE    C  +    FC S     
Sbjct: 191 PNSL--EQLLEKLERIMYSSIETASDLLSISKYGAKPKEYVIMCHDF----FCCS----- 239

Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
            E+S    D +L  L+   L C +   +     RK + +   +    L++LG  CA++  
Sbjct: 240 CEISKKVVD-TLENLRTFCLKCTEFHPEFDVDPRKPVLEAVNRTKSVLEQLGPWCAWKVC 298

Query: 334 KICLEKVLKAQ------EECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
           ++   ++ K        E+  I+ Q +     F + +L    +++           F+  
Sbjct: 299 QLFQRQLKKHSGQGFLPEKQVIFLQMAYTTMRFTKRLLDAKVASVRC---------FNDM 349

Query: 388 KAVDLGYISTKLHELLQLFLSFGKSTQV-----LC-IIFVERIIAAKVVERFVKKVP--- 438
           K +    +S +L E+L+ F S     +V      C I+FVE+   A V+   ++ +    
Sbjct: 350 KPILPDRLS-RLFEILK-FYSPSNMEKVDPDFTFCGIVFVEQRYVAYVLNTLIRAISRWD 407

Query: 439 ------FLTHLTVAYLTGSTTSVDALT-PKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
                  ++   + Y + + ++ + +   K Q+ VL  FR   +NLL AT V+EEG+ V 
Sbjct: 408 SDKFGYLVSDFIIGYNSANISAEETMALHKRQELVLRKFRQRHLNLLIATSVLEEGVDVR 467

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK-LFDIIRSERSVTD- 549
            C+ VIRFD P    +Y+QS+GRAR+  + + L++E  + +Q ++ L D ++ ER +   
Sbjct: 468 QCNVVIRFDRPTDYRAYVQSKGRARKDGASYFLLVEERDREQCSRDLKDFLQIERMLLKR 527

Query: 550 -TALSRDPEACFLKACTYVK--TKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPK 606
              +   PE     +   +      Y VESTGA VT  S++ L++RYC  LPSD +    
Sbjct: 528 YQNVHNPPEPTISPSIEAMDDIIAPYTVESTGAQVTLTSAIGLVNRYCAKLPSDIFTRLV 587

Query: 607 P----IFKYKSAEEAYECELTLPSNAPFQTIV---GPTSRNKNLSKQLVCLEACEKLHQV 659
           P    + +       Y  EL LP N+P +  +    P   +K L++  V LEAC +LH+ 
Sbjct: 588 PQNTIVPETVGDHVMYRAELLLPINSPIKETIKLKKPLG-SKKLAQMAVALEACRRLHKR 646

Query: 660 GALNDHLLPSVEEPSE-NNLISKKNESLPG----AGTTKRKELHGTTPIRAL 706
             LND+LLP  ++      L    +E +P      G+ +R++L+     +AL
Sbjct: 647 KELNDYLLPVGKDTIMLTALDEDPDEFIPNMNYKVGSARRRQLYDKRMAKAL 698



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 129/293 (44%), Gaps = 69/293 (23%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            +L+ALT     +  ++ERLE +GDS LKYAV+ +LF T P++HEG+LS  RS  V N  L
Sbjct: 1412 LLQALTLSNASDGINLERLETVGDSFLKYAVTDYLFHTNPEQHEGKLSFARSKEVSNCNL 1471

Query: 1122 HKLGTDRKLQGYIRDSAFDPRR-WVAP----------------------------GQLSL 1152
            ++LG    L   I  S FDP   W+ P                            G+   
Sbjct: 1472 YRLGRKHNLPSLIIGSKFDPNDGWLPPCYAPTSDFKAPNTLDAEERDKFIENVLEGKTVE 1531

Query: 1153 RPVPCEC------------------GVDTLEVPLDGKFFTQDTKVVVGKPCD-MGHRWMG 1193
            R  P                     G++T+E P      + D + +   P + +  + +G
Sbjct: 1532 RQEPVRVPTGWDEADRNSQVRRIADGIETIEFP-KNMITSWDGEEITPLPYNLLTQQSLG 1590

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP---- 1249
             K+IAD  E+LIGA+ +  G  A L  MKWLG+    E   V+  + R    +  P    
Sbjct: 1591 DKSIADAVESLIGAHLLELGPTATLRFMKWLGLKVLTEPVQVEPPLLRFIDTTEQPDKSL 1650

Query: 1250 -RINEI------KDIESKIGYEFTVKFLLQEAITHASVQEFY------CYQNL 1289
             ++N++        +E  IGY F  +  L +A THAS   +Y      CYQ L
Sbjct: 1651 RKLNDLWVQFQFSKLEDFIGYRFNDRAYLLQAFTHAS---YYKNRITGCYQRL 1700



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 17/155 (10%)

Query: 903  DAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 958
            DA N +D VV+  +  R     Y + EI++      P     DD   TF +YF +KYGIV
Sbjct: 867  DAANFQDAVVMPWYRDRDHPSFYYVAEIID----AKPSSKFPDDKFATFNDYFIQKYGIV 922

Query: 959  LIHPGQPLLRLKQSHNPHNLLV-----NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLV 1013
            +    QPLL +  + +  NLL+        +     +GS+SG    + Q+ V   PEL+ 
Sbjct: 923  IYDQEQPLLDVDYTSSRLNLLMPRHWSRSRNRTTEERGSESG-GMSQGQILV---PELVD 978

Query: 1014 RVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
               +  S+   +  LP+++ R+ SL+LA +LRE I
Sbjct: 979  VHPIAASLWNVIAALPTLLYRINSLLLADELRELI 1013



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDS 1383
             PKA+GD+ ES+ GA+ +D+  +LD VWR+F  ++   +       P  P+REL+E+   
Sbjct: 1805 VPKAMGDIFESVAGAIYLDSGRSLDIVWRVFYNLMKETIDECCSNPPRSPIRELLEMEPE 1864

Query: 1384 LGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRI 1443
               F K    L+   V   + +Q K     G G  RS + AK  AA + L+ L   +K  
Sbjct: 1865 RARFSKLERILETGKVRVTVDIQGK-CRFTGMG--RSYRIAKCTAAKRALRYLRSLKKEK 1921

Query: 1444 SKGA 1447
             + A
Sbjct: 1922 ERAA 1925


>gi|134084339|emb|CAK48679.1| unnamed protein product [Aspergillus niger]
          Length = 1531

 Score =  220 bits (560), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 186/693 (26%), Positives = 324/693 (46%), Gaps = 93/693 (13%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK----KLIIFLAP 101
           PR YQL++FE AK +NTIAVL+TG+GKT+IAV+L+K   +   ++  +    ++  FL  
Sbjct: 117 PREYQLELFERAKVQNTIAVLDTGSGKTLIAVLLLKHTLEKELNDRMEGKPHRIAFFLVD 176

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V L +QQ  V+R + D  V  ++GA G D W    W +   KN V+V T +IL   L  
Sbjct: 177 SVTLAYQQAAVLRNNLDQSVGHFFGAMGTDLWSKSVWDQHFQKNMVIVCTAEILNQCLLN 236

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSA 219
           +++ +  +  ++ DE HH   +HPY +I+++ Y +     +P++FGMTASP+  KG    
Sbjct: 237 SYIKMSQINILIFDEAHHTKKDHPYARIIRDSYLEEVYSKRPRIFGMTASPIDTKG---- 292

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
            D   + + LE  LDS++ T    + M +    A+                   +E  W 
Sbjct: 293 -DIVDEATRLEKLLDSRIATT---SNMSLLRQVARRP-----------------VERVW- 330

Query: 280 KFDASLSKL-QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338
               S +KL Q    + YK ++D+   +   L            ELG  C+  A    L 
Sbjct: 331 ----SFNKLEQPFATSLYKHLEDRFGDM-ACLEGIFRFAWQASSELGRWCSDRAWARALA 385

Query: 339 KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTK 398
             +  + E  + + ++ +    + E  +     +  A +I   + F  S     G +S K
Sbjct: 386 DDVLPKLEGSVRKTANSETSSNVPESAYKEILRITEASEIVKSYAF--SSPETFGQLSPK 443

Query: 399 LHELL-QLFLSFGKSTQVLCIIFVERIIAAKVVERFVK--KVPFLT-HLTVAYLTGSTTS 454
           +  L  +L   FG+ T+  CI+F ++   A ++    +   +PFL   + +   +G    
Sbjct: 444 VQVLREELARYFGRQTETKCIVFTQKRYTALILAELFQTLNIPFLRPGVLIGVRSGDLAG 503

Query: 455 VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
           ++ +T + Q   L  FR G++N LFAT V EEG+ +P+C+ V+     K V     S  R
Sbjct: 504 MN-ITFRQQFISLVKFRTGEINCLFATSVAEEGLDIPDCNLVV--STCKAVGVRDISIQR 560

Query: 515 ARQHNSQFILMLERGNLKQRNKLFDIIRSERSV------TDTALSRDPEACFLKACTYVK 568
            R  + + I  + RG L  R+K+   +  +R +       DT L +D             
Sbjct: 561 MRVWSKEGIWSMSRGYL--RSKMLKTLPEDRLLYGFDHDLDTVLQKDE-----------G 607

Query: 569 TKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNA 628
            +++ ++STGA +T  S+  ++ RY   L  +K ++ +  +       A+ CE+ LP  +
Sbjct: 608 NRTFRIKSTGAKLTYHSATAILARYASSLQYEKEFSAQVTYVVLPINGAFVCEVILPEKS 667

Query: 629 PFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL-------LPSV---------EE 672
           P + + G  +  K+++K+    + C  L +   L+DH        LP++         + 
Sbjct: 668 PIRGLTGSPAMKKSIAKRSAAFDTCLLLRKNKLLDDHFNSIYHRRLPAMRNAKLAITSKR 727

Query: 673 PSENNLISK-----KNESLPGAGTTKRKELHGT 700
            S+ ++ISK     + + +P       KELHGT
Sbjct: 728 TSQYDMISKPSLWGRKQGMPP------KELHGT 754



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 118/504 (23%), Positives = 175/504 (34%), Gaps = 137/504 (27%)

Query: 961  HPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPIS 1020
            H  QP+LR +      NLL    D              +  +    +  E L    +P S
Sbjct: 950  HWDQPVLRAELVRLRRNLLDKMTD------------TERDVETRCFICIEPLKVSAIPAS 997

Query: 1021 VVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT------------- 1067
               S    P+++ R+++ +++ Q      C S NF +   L LEA T             
Sbjct: 998  TAFSCLAFPAIISRIDAYLISLQ-----GCESLNFTVKLDLALEAFTKDSDNTDEHRAQQ 1052

Query: 1068 ---TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL 1124
                 G   ++  ERLE LGD  LK A S  LF   P   E      R   +CN  L   
Sbjct: 1053 IHVQRGMGRNY--ERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNA 1110

Query: 1125 GTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP 1184
              D+++  YIR   F   R     + +  P     G+  L+     +  T ++K      
Sbjct: 1111 AVDKEIYKYIRSRGFS--RLTDAARHTWYPE----GLKLLQGKDHSRKATTESKHA---- 1160

Query: 1185 CDMGHRWMGSKTIADCAEALIGAYYVGGG----LIAALYMMKWLGIDADLEVSLVDDCIT 1240
                   +  KTIAD  EALIGA  + GG       A+  +  L      +     D I+
Sbjct: 1161 -------LAEKTIADVCEALIGAALLSGGPDHRFDMAVKAVTTLVNSPSHKAERWKDYIS 1213

Query: 1241 RASLRSYVPRINE------IKDIESKIGYEFTVKFLLQEAITHASVQEFY----CYQN-- 1288
              ++  Y  R  +       + IE K+ Y F    LL  A TH S    +    CYQ   
Sbjct: 1214 FYTIPKYQRRAADGAELYLSRKIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLE 1273

Query: 1289 ------------------------------------------------LYKHLQHCSTLL 1300
                                                            L+ HL++ S  L
Sbjct: 1274 FLGDSLIDMVCVEDLFARFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPL 1333

Query: 1301 LSQITEYVKSFPKP-GET---------TDSGPSMKAPKALG-----------DLLESIVG 1339
             SQIT+Y +      GE+         T   P +  P AL            D++E+ VG
Sbjct: 1334 QSQITQYAEEIQTAEGESEGAVDYWTVTKDPPKVMTPSALRNTANVDGQCLPDMVEAYVG 1393

Query: 1340 AVLIDTKLNLDEVWRIFKPILSPI 1363
            AV +D+  N + + R F+  + P 
Sbjct: 1394 AVFVDSDFNFEVIERFFRDYIKPF 1417


>gi|158300291|ref|XP_320248.4| AGAP012289-PA [Anopheles gambiae str. PEST]
 gi|157013088|gb|EAA00264.4| AGAP012289-PA [Anopheles gambiae str. PEST]
          Length = 1672

 Score =  219 bits (559), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 213/768 (27%), Positives = 344/768 (44%), Gaps = 101/768 (13%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLA 100
           +F PR YQ+++ E+   +NTI  L TG+GKT IA+M++K+I+  +++   +  K   FLA
Sbjct: 9   DFAPRNYQVQMKEICLAKNTIIFLPTGSGKTYIALMVMKEISHQLRNTVHEGGKRTFFLA 68

Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
            TV L  QQ      H  F V  Y     VD W S  W +E ++  V++ T QILLD LR
Sbjct: 69  NTVALAKQQAQFFARHMPFNVRLYTSEVNVDAWKSDRWHEEFSEGQVIICTAQILLDVLR 128

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-SDNKPKVFGMTASPVVRKGVSSA 219
             ++S   +  IV DECH A G HP   IMKE     +  +P+V G++ + ++ K +  A
Sbjct: 129 HGYMSPANINLIVFDECHRAVGQHPMHAIMKEIVAAPASERPRVLGLSGT-LLFKELKMA 187

Query: 220 MDCEGQISELESTLDSQVFTI---EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276
                ++  LE+T  S + T+   +D   +  F  +  E    Y +       L   ++ 
Sbjct: 188 SQVPDELERLENTFSSTIATVANYDDYATVASFSTNPNEVLVTYSKP---AVHLMPLVKE 244

Query: 277 SWSKFDASLSKLQGSQLNCYKDMDDKH---------KTLRKQLSDYHAKILYCLDELGLI 327
            W + DA +  L    L  Y     +          K +++ L+++  +    L+E G+ 
Sbjct: 245 MWPRIDAFVEWLLQVYLPEYSTQSTRTLQKSFCKPLKEVKRALTEFKHQ----LEEHGMY 300

Query: 328 C---AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALP--LADKIFLDF 382
               A  AV + LE V K Q  C+  RQ       F E + H +  A+         L F
Sbjct: 301 AGSLAILAVIVQLE-VSKRQSPCDKARQVYRSAISFCESIRHELVEAMSGLRGTHQILSF 359

Query: 383 GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF--- 439
             D ++         KL + L+      +      ++FV+R   AKV+   + ++ F   
Sbjct: 360 SSDQAR---------KLLKYLEDSYRTAEDKNKQALVFVKRRFTAKVLYHLI-RIYFHCL 409

Query: 440 --------LTHLTVA--YLTGSTT----SVDA-LTPKVQKEVLESFRGGKVNLLFATDVI 484
                   L    V   ++ G+      S+DA L  +  + V+E+FR  K+N+L AT+V+
Sbjct: 410 SKRDNEDELVEPIVKPDFIVGANAALEESIDAILVVREDRRVIENFRKRKINVLCATNVL 469

Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQ---RNKLFDII 541
           EEG+ +  C+ VI +D P + +S++QS+GRAR   S +++M    +L+Q   R KL+  I
Sbjct: 470 EEGIDLQMCNMVIMYDAPLSYASFMQSKGRARMKTSTYLMMTPAADLQQFAKRMKLYRDI 529

Query: 542 RS---ERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLP 598
            +   E  V  T    +P    ++                A +   S++ L++RYC  +P
Sbjct: 530 ENRLKEELVGKTINRPEPLENDVRKELLDDLIPPFYTPFKAKLDALSAIQLLNRYCMSMP 589

Query: 599 SDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIV-----GPTSRNKNLSKQLVCLEAC 653
            D +      ++     +    E+ +    P Q+ V     G T +N  L+KQ     AC
Sbjct: 590 RDLFTGSNVTWERI---DRSPTEIIVTVKLPLQSTVREVIHGQTMKNLKLAKQSAAFNAC 646

Query: 654 EKLHQVGALNDHLLP-----SVEEPSENNL-ISKKNESLPG---AGTTKRKELH------ 698
           ++L +VG LN +LLP      VEE SE    + +K    P    AGT K    H      
Sbjct: 647 KRLFEVGELNMYLLPIATKDKVEELSEQYFKLWRKMSDEPNPKQAGTMKYVRGHKIVYPE 706

Query: 699 ---GTTPIRALSGRWGEKCGVILHAYKFNFACS-------IVTEIYSG 736
              G TP        GE+C V +   + +F  +       I  E+YS 
Sbjct: 707 ETVGCTPQAD-----GEQCYVYIVRMRAHFDANTHLENVRIFQELYSS 749



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 142/343 (41%), Gaps = 56/343 (16%)

Query: 1051 HSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSA 1110
            ++ N  +  S +L+ALTT    + F++ER E+LGD+ LK+AVS ++   +   HEG L+ 
Sbjct: 1188 NTANVALQQSDLLQALTTKSSADVFNLERFEVLGDAFLKFAVSVYILFRHTSWHEGYLTT 1247

Query: 1111 RRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPC---ECGVDTLEV 1166
             +   V N  L        L G I+   FDP+  WV P    L  VP       VD  E 
Sbjct: 1248 CKGRMVSNRNLLYCAMGYGLPGKIKAHPFDPKNDWVPP----LSTVPGAVRRAMVDANES 1303

Query: 1167 P--LDGKFFTQD---TKVVVGKPCD--------------------MGHRWMGSKTIADCA 1201
            P  L     T++   + VV     D                    +    +  K +AD  
Sbjct: 1304 PALLYNLKLTEEEIQSGVVAQATVDKFLPLIEQAPAPSQSTLHTVLQQVQIRDKVVADVT 1363

Query: 1202 EALIGAYYVGGGLIAALYMMKWLGI---DADLEVSLVDDCITRASLRSYVP---RINEI- 1254
            EAL+G      G   +   +  LGI    AD+ + L     T   +  Y P   +++++ 
Sbjct: 1364 EALLGVCVKTVGYERSFRFLSHLGIIPKGADVPMLL---RTTTFPIGDYFPVRHKVDQLL 1420

Query: 1255 ---KDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSF 1311
               + IE+ +GY F  +  L +A TH S    Y   +L    Q      L  + + V  F
Sbjct: 1421 CNPERIEATLGYRFRNRTYLLQAFTHTS----YTSNSLTGSYQQ-----LEFLGDAVLDF 1471

Query: 1312 PKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWR 1354
                   +  PSM +P  L DL  ++V  V +   L  +E+ R
Sbjct: 1472 LVSMYIYERNPSM-SPGQLTDLRSALVNNVNLACVLVRNELHR 1513


>gi|80979085|gb|ABB54745.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  219 bits (558), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 190/679 (27%), Positives = 328/679 (48%), Gaps = 77/679 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   + N I  L TG+GKT +A++++K    D  + I+S G  K  +F+  
Sbjct: 1   PRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGG--KRALFMCN 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R  T+F+V  Y G +GVD+W    W  EI KN VLV T Q+ LD + +
Sbjct: 59  TVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQ 118

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAM 220
            +++L  +  ++IDECHH TG+HP+ + M+ F   +  K P+V G+T   V+ KG +   
Sbjct: 119 TYVALSSLSVVIIDECHHGTGHHPFREFMRLFTIANQTKLPRVVGLTG--VLIKG-NEIT 175

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKES---CRFYDQ------SKFCGSDL 270
           +   ++ ELE T    + T+ D  EME V + + K +     F  Q      ++   +++
Sbjct: 176 NVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISAEI 235

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           + K  VS    +  +  ++ S+ L C +  D   K+  KQL +     LY + E G+  A
Sbjct: 236 E-KFYVSLDLMNIGVQPIRRSKSLQCLR--DPSKKSFVKQLFN---DFLYQMKEYGIYAA 289

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E++ H++     L D  + D  
Sbjct: 290 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----EKIRHLLVQK--LQDMTYDDDD 343

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            +  ++ V + + + K+   L+ L +SF       + C++FVER    K +      +++
Sbjct: 344 DNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYIQ 403

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L + LT  ++ G +  S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 404 STPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDV 463

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS---- 546
             C++V   D  KT + Y+QS+GRAR   ++F+L       K+R K    I   R     
Sbjct: 464 QACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTAD---KEREKTIQQIYQYRKAHND 520

Query: 547 ----VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
               + D  L + +PE   +K         +  E+ GA +  ++++ ++HRYC+ +P+D 
Sbjct: 521 IAEYLKDRVLEKTEPELYEIKGHFQDDIDPFTNEN-GAVLLPNNALAILHRYCQTIPTDA 579

Query: 602 YYTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVC 649
           +    P F              SA+  +   + +P N   + TI      N   +K    
Sbjct: 580 FGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAA 639

Query: 650 LEACEKLHQVGALNDHLLP 668
            +AC+ L+ +G LN+  +P
Sbjct: 640 FKACKVLYSLGELNERFVP 658



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1187 FLAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNL 1246

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
                 D  +   +    F PR  W+ PG
Sbjct: 1247 LFCLIDADIPKTLNTIQFTPRYTWLPPG 1274



 Score = 43.9 bits (102), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 1306 EYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT 1365
            E  K  P  GE   S  ++  PKALGD+LE+++ AV +D + +L   W +   +  P + 
Sbjct: 1582 EAEKGVPPKGEFNMST-NVDVPKALGDVLEALIAAVYLDCR-DLQRTWEVIFNLFEPELQ 1639

Query: 1366 PDKLELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKA 1423
                ++P   +R+L+E   +   F       +  MV  +     K + + G G  + +  
Sbjct: 1640 EFTRKVPINHIRQLVEHKHAKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQ-- 1697

Query: 1424 AKGKAASQLLKKLEVCE 1440
            AK  AA   L++L  C+
Sbjct: 1698 AKLSAAKHALQQLSKCD 1714


>gi|80979097|gb|ABB54751.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  219 bits (558), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 190/679 (27%), Positives = 328/679 (48%), Gaps = 77/679 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   + N I  L TG+GKT +A++++K    D  + I+S G  K  +F+  
Sbjct: 1   PRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGG--KRALFMCN 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R  T+F+V  Y G +GVD+W    W  EI KN VLV T Q+ LD + +
Sbjct: 59  TVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQ 118

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAM 220
            +++L  +  ++IDECHH TG+HP+ + M+ F   +  K P+V G+T   V+ KG +   
Sbjct: 119 TYVALSSLSVVIIDECHHGTGHHPFREFMRLFTIANQTKLPRVVGLTG--VLIKG-NEIT 175

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKES---CRFYDQ------SKFCGSDL 270
           +   ++ ELE T    + T+ D  EME V + + K +     F  Q      ++   +++
Sbjct: 176 NVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISAEI 235

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           + K  VS    +  +  ++ S+ L C +  D   K+  KQL +     LY + E G+  A
Sbjct: 236 E-KFYVSLDLMNIGVQPIRRSKSLQCLR--DPSKKSFVKQLFN---DFLYQMKEYGIYAA 289

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E++ H++     L D  + D  
Sbjct: 290 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----EKIRHLLVQK--LQDMTYDDDD 343

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            +  ++ V + + + K+   L+ L +SF       + C++FVER    K +      +++
Sbjct: 344 DNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYIQ 403

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L + LT  ++ G +  S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 404 STPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDV 463

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS---- 546
             C++V   D  KT + Y+QS+GRAR   ++F+L       K+R K    I   R     
Sbjct: 464 QACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTAD---KEREKTIQQIYQYRKAHND 520

Query: 547 ----VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
               + D  L + +PE   +K         +  E+ GA +  ++++ ++HRYC+ +P+D 
Sbjct: 521 IAEYLKDRVLEKTEPELYEIKGHFQDDIDPFTNEN-GAVLLPNNALAILHRYCQTIPTDA 579

Query: 602 YYTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVC 649
           +    P F              SA+  +   + +P N   + TI      N   +K    
Sbjct: 580 FGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAA 639

Query: 650 LEACEKLHQVGALNDHLLP 668
            +AC+ L+ +G LN+  +P
Sbjct: 640 FKACKVLYSLGELNERFVP 658



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1187 FLAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNL 1246

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
                 D  +   +    F PR  W+ PG
Sbjct: 1247 LFCLIDADIPKTLNTIQFTPRYTWLPPG 1274



 Score = 43.9 bits (102), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 1306 EYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT 1365
            E  K  P  GE   S  ++  PKALGD+LE+++ AV +D + +L   W +   +  P + 
Sbjct: 1582 EAEKGVPPKGEFNMST-NVDVPKALGDVLEALIAAVYLDCR-DLQRTWEVIFNLFEPELQ 1639

Query: 1366 PDKLELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKA 1423
                ++P   +R+L+E   +   F       +  MV  +     K + + G G  + +  
Sbjct: 1640 EFTRKVPINHIRQLVEHKHAKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQ-- 1697

Query: 1424 AKGKAASQLLKKLEVCE 1440
            AK  AA   L++L  C+
Sbjct: 1698 AKLSAAKHALQQLSKCD 1714


>gi|80979091|gb|ABB54748.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  219 bits (558), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 190/679 (27%), Positives = 328/679 (48%), Gaps = 77/679 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   + N I  L TG+GKT +A++++K    D  + I+S G  K  +F+  
Sbjct: 1   PRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGG--KRALFMCN 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R  T+F+V  Y G +GVD+W    W  EI KN VLV T Q+ LD + +
Sbjct: 59  TVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQ 118

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAM 220
            +++L  +  ++IDECHH TG+HP+ + M+ F   +  K P+V G+T   V+ KG +   
Sbjct: 119 TYVALSSLSVVIIDECHHGTGHHPFREFMRLFTIANQTKLPRVVGLTG--VLIKG-NEIT 175

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKES---CRFYDQ------SKFCGSDL 270
           +   ++ ELE T    + T+ D  EME V + + K +     F  Q      ++   +++
Sbjct: 176 NVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISAEI 235

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           + K  VS    +  +  ++ S+ L C +  D   K+  KQL +     LY + E G+  A
Sbjct: 236 E-KFYVSLDLMNIGVQPIRRSKSLQCLR--DPSKKSFVKQLFN---DFLYQMKEYGIYAA 289

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E++ H++     L D  + D  
Sbjct: 290 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----EKIRHLLVQK--LQDMTYDDDD 343

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            +  ++ V + + + K+   L+ L +SF       + C++FVER    K +      +++
Sbjct: 344 DNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYIQ 403

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L + LT  ++ G +  S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 404 STPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDV 463

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS---- 546
             C++V   D  KT + Y+QS+GRAR   ++F+L       K+R K    I   R     
Sbjct: 464 QACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTAD---KEREKTIQQIYQYRKAHND 520

Query: 547 ----VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
               + D  L + +PE   +K         +  E+ GA +  ++++ ++HRYC+ +P+D 
Sbjct: 521 IAEYLKDRVLEKTEPELYEIKGHFQDDIDPFTNEN-GAVLLPNNALAILHRYCQTIPTDA 579

Query: 602 YYTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVC 649
           +    P F              SA+  +   + +P N   + TI      N   +K    
Sbjct: 580 FGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAA 639

Query: 650 LEACEKLHQVGALNDHLLP 668
            +AC+ L+ +G LN+  +P
Sbjct: 640 FKACKVLYSLGELNERFVP 658



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1187 FLAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNL 1246

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
                 D  +   +    F PR  W+ PG
Sbjct: 1247 LFCLIDADIPKTLNTIQFTPRYTWLPPG 1274



 Score = 43.9 bits (102), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 1306 EYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT 1365
            E  K  P  GE   S  ++  PKALGD+LE+++ AV +D + +L   W +   +  P + 
Sbjct: 1582 EAEKGVPPKGEFNMST-NVDVPKALGDVLEALIAAVYLDCR-DLQRTWEVIFNLFEPELQ 1639

Query: 1366 PDKLELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKA 1423
                ++P   +R+L+E   +   F       +  MV  +     K + + G G  + +  
Sbjct: 1640 EFTRKVPINHIRQLVEHKHAKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQ-- 1697

Query: 1424 AKGKAASQLLKKLEVCE 1440
            AK  AA   L++L  C+
Sbjct: 1698 AKLSAAKHALQQLSKCD 1714


>gi|80979087|gb|ABB54746.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  219 bits (558), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 190/679 (27%), Positives = 328/679 (48%), Gaps = 77/679 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   + N I  L TG+GKT +A++++K    D  + I+S G  K  +F+  
Sbjct: 1   PRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGG--KRALFMCN 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R  T+F+V  Y G +GVD+W    W  EI KN VLV T Q+ LD + +
Sbjct: 59  TVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQ 118

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAM 220
            +++L  +  ++IDECHH TG+HP+ + M+ F   +  K P+V G+T   V+ KG +   
Sbjct: 119 TYVALSSLSVVIIDECHHGTGHHPFREFMRLFTIANQTKLPRVVGLTG--VLIKG-NEIT 175

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKES---CRFYDQ------SKFCGSDL 270
           +   ++ ELE T    + T+ D  EME V + + K +     F  Q      ++   +++
Sbjct: 176 NVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISAEI 235

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           + K  VS    +  +  ++ S+ L C +  D   K+  KQL +     LY + E G+  A
Sbjct: 236 E-KFYVSLDLMNIGVQPIRRSKSLQCLR--DPSKKSFVKQLFN---DFLYQMKEYGIYAA 289

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E++ H++     L D  + D  
Sbjct: 290 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----EKIRHLLVQK--LQDMTYDDDD 343

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            +  ++ V + + + K+   L+ L +SF       + C++FVER    K +      +++
Sbjct: 344 DNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYIQ 403

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L + LT  ++ G +  S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 404 STPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDV 463

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS---- 546
             C++V   D  KT + Y+QS+GRAR   ++F+L       K+R K    I   R     
Sbjct: 464 QACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTAD---KEREKTIQQIYQYRKAHND 520

Query: 547 ----VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
               + D  L + +PE   +K         +  E+ GA +  ++++ ++HRYC+ +P+D 
Sbjct: 521 IAEYLKDRVLEKTEPELYEIKGHFQDDIDPFTNEN-GAVLLPNNALAILHRYCQTIPTDA 579

Query: 602 YYTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVC 649
           +    P F              SA+  +   + +P N   + TI      N   +K    
Sbjct: 580 FGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAA 639

Query: 650 LEACEKLHQVGALNDHLLP 668
            +AC+ L+ +G LN+  +P
Sbjct: 640 FKACKVLYSLGELNERFVP 658



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1187 FLAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNL 1246

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
                 D  +   +    F PR  W+ PG
Sbjct: 1247 LFCLIDADIPKTLNTIQFTPRYTWLPPG 1274



 Score = 43.9 bits (102), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 1306 EYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT 1365
            E  K  P  GE   S  ++  PKALGD+LE+++ AV +D + +L   W +   +  P + 
Sbjct: 1582 EAEKGVPPKGEFNMST-NVDVPKALGDVLEALIAAVYLDCR-DLQRTWEVIFNLFEPELQ 1639

Query: 1366 PDKLELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKA 1423
                ++P   +R+L+E   +   F       +  MV  +     K + + G G  + +  
Sbjct: 1640 EFTRKVPINHIRQLVEHKHAKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQ-- 1697

Query: 1424 AKGKAASQLLKKLEVCE 1440
            AK  AA   L++L  C+
Sbjct: 1698 AKLSAAKHALQQLSKCD 1714


>gi|80979089|gb|ABB54747.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  219 bits (558), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 190/679 (27%), Positives = 328/679 (48%), Gaps = 77/679 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   + N I  L TG+GKT +A++++K    D  + I+S G  K  +F+  
Sbjct: 1   PRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGG--KRALFMCN 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R  T+F+V  Y G +GVD+W    W  EI KN VLV T Q+ LD + +
Sbjct: 59  TVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQ 118

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAM 220
            +++L  +  ++IDECHH TG+HP+ + M+ F   +  K P+V G+T   V+ KG +   
Sbjct: 119 TYVALSSLSVVIIDECHHGTGHHPFREFMRLFTIANQTKLPRVVGLTG--VLIKG-NEIT 175

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKES---CRFYDQ------SKFCGSDL 270
           +   ++ ELE T    + T+ D  EME V + + K +     F  Q      ++   +++
Sbjct: 176 NVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISAEI 235

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           + K  VS    +  +  ++ S+ L C +  D   K+  KQL +     LY + E G+  A
Sbjct: 236 E-KFYVSLDLMNIGVQPIRRSKSLQCLR--DPSKKSFVKQLFN---DFLYQMKEYGIYAA 289

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E++ H++     L D  + D  
Sbjct: 290 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----EKIRHLLVQK--LQDMTYDDDD 343

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            +  ++ V + + + K+   L+ L +SF       + C++FVER    K +      +++
Sbjct: 344 DNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYIQ 403

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L + LT  ++ G +  S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 404 STPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDV 463

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS---- 546
             C++V   D  KT + Y+QS+GRAR   ++F+L       K+R K    I   R     
Sbjct: 464 QACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTAD---KEREKTIQQIYQYRKAHND 520

Query: 547 ----VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
               + D  L + +PE   +K         +  E+ GA +  ++++ ++HRYC+ +P+D 
Sbjct: 521 IAEYLKDRVLEKTEPELYEIKGHFQDDIDPFTNEN-GAVLLPNNALAILHRYCQTIPTDA 579

Query: 602 YYTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVC 649
           +    P F              SA+  +   + +P N   + TI      N   +K    
Sbjct: 580 FGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAA 639

Query: 650 LEACEKLHQVGALNDHLLP 668
            +AC+ L+ +G LN+  +P
Sbjct: 640 FKACKVLYSLGELNERFVP 658



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1187 FLAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNL 1246

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
                 D  +   +    F PR  W+ PG
Sbjct: 1247 LFCLIDADIPKTLNTIQFTPRYTWLPPG 1274



 Score = 43.9 bits (102), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 1306 EYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT 1365
            E  K  P  GE   S  ++  PKALGD+LE+++ AV +D + +L   W +   +  P + 
Sbjct: 1582 EAEKGVPPKGEFNMST-NVDVPKALGDVLEALIAAVYLDCR-DLQRTWEVIFNLFEPELQ 1639

Query: 1366 PDKLELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKA 1423
                ++P   +R+L+E   +   F       +  MV  +     K + + G G  + +  
Sbjct: 1640 EFTRKVPINHIRQLVEHKHAKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQ-- 1697

Query: 1424 AKGKAASQLLKKLEVCE 1440
            AK  AA   L++L  C+
Sbjct: 1698 AKLSAAKHALQQLSKCD 1714


>gi|322704697|gb|EFY96289.1| Dicer-like protein 1 [Metarhizium anisopliae ARSEF 23]
          Length = 1476

 Score =  219 bits (558), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 192/686 (27%), Positives = 315/686 (45%), Gaps = 98/686 (14%)

Query: 14  EVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKT 73
           +  +P   D  + G    V+   +S   I   PR YQ+ +FE AK +NTI VL+TG+GKT
Sbjct: 91  DTATPAKEDDTAEGSATIVES-GTSHQRIVTTPRQYQIDLFERAKEQNTIIVLDTGSGKT 149

Query: 74  MIAVMLIKDIA--QAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVD 131
            IAV+L++ +   +       K+   FL   V L  QQ+  ++ + ++ V + YG    D
Sbjct: 150 YIAVLLLRHVLALELETQQQTKRTAFFLVDKVALCLQQHRFLQANLEYPVGKLYG----D 205

Query: 132 EWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMK 191
           +   + W  EI +N V+V T QILLD L    ++++ +  +V DE HH   NHPY  IM+
Sbjct: 206 KASMREWASEIQENMVIVCTAQILLDLLSSGLVTMNQINLLVFDEAHHTKKNHPYATIMR 265

Query: 192 EFYHK-SDNKPKVFGMTASPV---VRKGVSSAMDCEGQISELESTLDSQVF--------T 239
           + Y +   + P++  MTASPV    R   ++A+D E  +    +T+  +V          
Sbjct: 266 DHYIRMKAHHPRILAMTASPVDSKTRDFYAAALDLEATLCSKIATVSEEVLLAGMGRKQQ 325

Query: 240 IEDKTEMEVFVPSAKE------------SCRFYDQSKFCGSDLKGKLEVSWSKFDASLSK 287
           IE   E       A E             CR+  QS F       ++ +  +++ AS   
Sbjct: 326 IERVIEYGPLADPADEMTMTTLSLSLSTLCRY--QSNF-------QIHLEAARYTASTIG 376

Query: 288 LQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEEC 347
             G+        D   + L K    Y       + EL    A E +        +A E+ 
Sbjct: 377 PWGA--------DQYWRQLFKSPDQY-----LTITELTANTADELISQVSGTYCQAHEQI 423

Query: 348 EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFL 407
           +             ++++      L + D +  +   D+S  VD       LHE+L    
Sbjct: 424 D-------------DDLIKARARKL-VTDHVHNESNQDFSLKVD------ALHEILHDAF 463

Query: 408 SFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGS---TTSVDALTPKVQ 463
              +ST+  CI+FV+ R IA  + E F +    +  +T  ++ GS   ++S+  ++ K Q
Sbjct: 464 ESQQSTR--CIVFVQKRYIAFLLSEAFNRSALRIQDMTAGFVVGSQPASSSIVNMSIKDQ 521

Query: 464 KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
            E L  FR G++N +FAT V EEG+ +P C  +IRFDL  +   YIQS+GRARQ NS ++
Sbjct: 522 IESLNRFRYGEINCIFATQVAEEGIDIPECDLIIRFDLYDSAIQYIQSKGRARQTNSVYV 581

Query: 524 LMLERGNLKQRNKLFDIIR-------------SERSVTDTALSRDPEACFLKACTYVKTK 570
            M+ER N++ R KL    R             S+R + D  +  +     L+A + +   
Sbjct: 582 NMVERDNIQHRRKLIQATRDVHALRRFCSSLPSDRKINDVEI--NDGLLGLQAKSQI--- 636

Query: 571 SYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPF 630
           S+ V  TGA +T DSS  ++ ++   +       P+ I    +    +   + LP + P 
Sbjct: 637 SFEVPQTGARLTFDSSRGVLAKFVSSVCGGADAHPEYIVT-STEMGKFTAIVLLPDSCPV 695

Query: 631 QTIVGPTSRNKNLSKQLVCLEACEKL 656
           ++  G   R+K L++     +AC +L
Sbjct: 696 KSFSGTPQRSKLLARGSAAFKACIEL 721



 Score = 94.0 bits (232), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 157/419 (37%), Gaps = 105/419 (25%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTT----LGCC 1072
            +P+ VV + + LP  +  +ES  +A        C S +  I   L LEALT     +   
Sbjct: 980  LPVDVVVTAFALPVAIYSIESAAIAMDA-----CGSIDLAIYPPLALEALTKGEEDVDVQ 1034

Query: 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQG 1132
             S + ERLE LGD+ LK A +  LF   P ++E +    R   +CN  L     DR LQ 
Sbjct: 1035 TSKNYERLEFLGDAFLKMATTISLFTLIPNRNEFEYHVERMILICNKNLFNHAVDRGLQE 1094

Query: 1133 YIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWM 1192
            Y+R   FD R W     L LR                        K    KP  +  R +
Sbjct: 1095 YVRSRGFDRRSWYP--DLVLR------------------------KGKKHKPVGLTQR-L 1127

Query: 1193 GSKTIADCAEALIGAYYVG--GGLIAALYMMKWLGIDADLEVSLVDDCITR------ASL 1244
              K+IAD  EALIGA Y+    G+  A+  +  +    +  +    D   +       ++
Sbjct: 1128 ADKSIADVCEALIGAAYMTEPEGMDLAVKAVTVMVQSKNHRMKKYSDYYEKYVQPAWQTI 1187

Query: 1245 RSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASV---QEFYCYQNL------------ 1289
             S    +  +  +++ IGY F    LL+ A  H S     E   YQ L            
Sbjct: 1188 PSRPIELLAVGKVKASIGYNFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAI 1247

Query: 1290 --------------------------------------YKHLQHCSTLLLSQITEYVKSF 1311
                                                  ++H+    + ++  I  +V+  
Sbjct: 1248 VDFLFQRYPLADPQWLTEHKMAMASNHFFSFLCVELGLHRHILSTGSSIMGHIAGFVEQI 1307

Query: 1312 PKPGETTDSG--------PSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSP 1362
             K    T+ G         +   PKAL D+LE++VGA+  D+K + + V   F   ++P
Sbjct: 1308 EKAKSQTEDGVLQLDFWLNTEHPPKALSDILEAVVGAMYEDSKYDYNSVRNFFTKFIAP 1366


>gi|80979099|gb|ABB54752.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  219 bits (558), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 190/679 (27%), Positives = 328/679 (48%), Gaps = 77/679 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   + N I  L TG+GKT +A++++K    D  + I+S G  K  +F+  
Sbjct: 1   PRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGG--KRALFMCN 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R  T+F+V  Y G +GVD+W    W  EI KN VLV T Q+ LD + +
Sbjct: 59  TVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQ 118

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAM 220
            +++L  +  ++IDECHH TG+HP+ + M+ F   +  K P+V G+T   V+ KG +   
Sbjct: 119 TYVALSSLSVVIIDECHHGTGHHPFREFMRLFTIANQTKLPRVVGLTG--VLIKG-NEIT 175

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKES---CRFYDQ------SKFCGSDL 270
           +   ++ ELE T    + T+ D  EME V + + K +     F  Q      ++   +++
Sbjct: 176 NVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISAEI 235

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           + K  VS    +  +  ++ S+ L C +  D   K+  KQL +     LY + E G+  A
Sbjct: 236 E-KFYVSLDLMNIGVQPIRRSKSLQCLR--DPSKKSFVKQLFN---DFLYQMKEYGIYAA 289

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E++ H++     L D  + D  
Sbjct: 290 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----EKIRHLLVQK--LQDMTYDDDD 343

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            +  ++ V + + + K+   L+ L +SF       + C++FVER    K +      +++
Sbjct: 344 DNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYIQ 403

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L + LT  ++ G +  S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 404 STPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDV 463

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS---- 546
             C++V   D  KT + Y+QS+GRAR   ++F+L       K+R K    I   R     
Sbjct: 464 QACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTAD---KEREKTIQQIYQYRKAHND 520

Query: 547 ----VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
               + D  L + +PE   +K         +  E+ GA +  ++++ ++HRYC+ +P+D 
Sbjct: 521 IAEYLKDRVLEKTEPELYEIKGHFQDDIDPFTNEN-GAVLLPNNALAILHRYCQTIPTDA 579

Query: 602 YYTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVC 649
           +    P F              SA+  +   + +P N   + TI      N   +K    
Sbjct: 580 FGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAA 639

Query: 650 LEACEKLHQVGALNDHLLP 668
            +AC+ L+ +G LN+  +P
Sbjct: 640 FKACKVLYSLGELNERFVP 658



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1187 FLAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNL 1246

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
                 D  +   +    F PR  W+ PG
Sbjct: 1247 LFCLIDADIPKTLNTIQFTPRYTWLPPG 1274



 Score = 43.9 bits (102), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 1306 EYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT 1365
            E  K  P  GE   S  ++  PKALGD+LE+++ AV +D + +L   W +   +  P + 
Sbjct: 1582 EAEKGVPPKGEFNMST-NVDVPKALGDVLEALIAAVYLDCR-DLQRTWEVIFNLFEPELQ 1639

Query: 1366 PDKLELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKA 1423
                ++P   +R+L+E   +   F       +  MV  +     K + + G G  + +  
Sbjct: 1640 EFTRKVPINHIRQLVEHKHAKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQ-- 1697

Query: 1424 AKGKAASQLLKKLEVCE 1440
            AK  AA   L++L  C+
Sbjct: 1698 AKLSAAKHALQQLSKCD 1714


>gi|342872111|gb|EGU74508.1| hypothetical protein FOXB_14953 [Fusarium oxysporum Fo5176]
          Length = 1500

 Score =  219 bits (558), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 192/699 (27%), Positives = 327/699 (46%), Gaps = 79/699 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD-IAQAIKSNG---FKKLIIFLAP 101
           PR YQ+++FE AK RN + VL TG GKT+I+ +L++  + Q +++      KK+  FL  
Sbjct: 81  PREYQIELFERAKERNLLVVLPTGTGKTLISALLLRHHLEQELEARAIGKLKKVAFFLVE 140

Query: 102 TVHLVHQQYDVIRVHTDFE-VEEYYG-AKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            V L  QQ+ V+  +     V ++ G  KG+ +   + W ++  +N V+V T QILLD L
Sbjct: 141 KVALCVQQHAVLSCNLGAHPVTKFVGHMKGMTK-TKEYWDEKFGENMVVVCTAQILLDCL 199

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD-NKPKVFGMTASPVVRKGVSS 218
              F+++  +  ++ DE HH    HPY +IM  +Y K +  KP++ GMTASPV     + 
Sbjct: 200 TCGFITMSRINLLIFDEAHHTKKKHPYARIMDGYYCKHEGEKPRILGMTASPV----DAR 255

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKF-CGSDLKGKLEVS 277
             D      ELE +LDSQ+ TI D+  ME  +   K++    + S+     D K  L   
Sbjct: 256 TKDVRDTALELERSLDSQIATISDEVLMET-MHRKKQTEETVNYSRLEAPDDTKTHL--- 311

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL 337
           W +  A +S+ +  +L              K+ S            LG  CA    ++  
Sbjct: 312 WEQIFALVSRNEQFKLTL---------EFTKEASSV----------LGTWCADRYWEL-- 350

Query: 338 EKVLKAQEECEIYRQSSLQCKYFLEEV----LHVIGSALPLADKIFL--DFGFDYSKAVD 391
                A  + E  R ++   + F+ ++      +   A+    +I     FG    KA  
Sbjct: 351 -----AMTDLETERLAARTSREFIGDIAVTRADLATEAVRRVQEIVQAHKFGAIDPKAEG 405

Query: 392 LGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF-LTHLTVAYLTG 450
           L      LHE+L    +   + +  CI+FVE+   A+++     +    +  ++ +Y+ G
Sbjct: 406 LSAKVKSLHEILSHAFTMDGTKR--CIVFVEKRYTARLLSDLYSQPSMRIPGMSASYMVG 463

Query: 451 ---STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
              + +S   ++ + Q   L  F+ G  N LF T V EEG+ VP+C  VIRFDL  +V  
Sbjct: 464 CQSTNSSFGTMSFREQVLALHEFKRGNTNCLFTTPVAEEGIDVPDCDLVIRFDLYNSVIQ 523

Query: 508 YIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIR-------------SERSVTDTALSR 554
           Y+QS+GRARQ  S++I M+E GNL         +R             ++R + D  +  
Sbjct: 524 YLQSKGRARQARSRYITMMEEGNLTHIRSAKQALRDSQALEKFCLPLSADRKLHDDLIDE 583

Query: 555 DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA 614
           D E    +    ++ + Y + STGA +T  +S+ ++ R+   L +  Y   K  ++ +  
Sbjct: 584 DMEMMVER----MQHQVYEIPSTGARLTFPASLEILARFVSHLSTGSY--AKVEYQVQKV 637

Query: 615 EEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPS 674
            + Y  ++ +P  +P   + G   R+K L+K     EAC+ L +   ++ +L P+ ++  
Sbjct: 638 GDRYLADVVMPLQSPVNFVKGTQQRSKLLAKCSAAFEACKILIRDKHVDGNLQPTFKK-- 695

Query: 675 ENNLISKKNESLPGAGTTKRK-ELHGTTPIRALSGRWGE 712
              + + +N  L  +   K   ++     I A  G W E
Sbjct: 696 --KVHAMRNARLAMSSNKKADYDMRLRPEIWAERGEWTE 732



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 160/444 (36%), Gaps = 140/444 (31%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +PI VV      P+++ R++S+++         C+  +  IP  L LEA+T         
Sbjct: 976  LPIDVVSMAMAFPAIIHRIDSVLIVLDA-----CNLLDLEIPPELALEAMTKDSDNSGEH 1030

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G  +++  ERLE LGD  LK A +  ++   P  +E +    R   +CN  
Sbjct: 1031 DTEQINFQTGMGDNY--ERLEFLGDCFLKMATTISIYTLMPDGNECKYHVERMLLICNQN 1088

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPL-DGKFFTQDTKV 1179
            L     DRKLQ ++R  AFD R W                    ++PL  GK        
Sbjct: 1089 LFNHAVDRKLQEFVRSKAFDRRTWYP------------------DLPLKKGK-------- 1122

Query: 1180 VVGKPCDMGHRWMGSKTIADCAEALIGAYYV---GGGLIAALYMMKWLGIDADLEVSLVD 1236
                   M H  +  KTIAD  EALIGA Y+      +  A+  +  +    +  +    
Sbjct: 1123 --APKTSMKHN-LADKTIADVCEALIGAAYLTSKASNMDLAVKAVTRMTKSKNHRMKAFK 1179

Query: 1237 DCI------------TRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ--- 1281
            D                AS RS V ++ +        GY F    L+Q A  H S     
Sbjct: 1180 DYYKAYKVPEWQEGNASASQRSLVQKVAQ------ATGYRFKSAQLVQSAFKHPSWPYES 1233

Query: 1282 -------EF------------YCYQN------------------------------LYKH 1292
                   EF            Y YQN                              L++H
Sbjct: 1234 VPDYQRLEFLGDSLLDMAIVDYLYQNFPRADPQWLTEHKMAMVSNQFLECLCVKLGLHQH 1293

Query: 1293 LQHCSTLLLSQITEYVKSFPKPGETT-----DSGPSMK---------APKALGDLLESIV 1338
            L   ++ LLSQI +YV       E       + G  M+         APK   D++E++V
Sbjct: 1294 LLSSTSSLLSQIRDYVVELEVAEENAHKEAKEVGTPMRKDFWLKVGSAPKVYADVIEALV 1353

Query: 1339 GAVLIDTKLNLDEVWRIFKPILSP 1362
            GA+ +D+K     V   F   + P
Sbjct: 1354 GAMFVDSKYKFSVVENFFTKFIQP 1377


>gi|80979095|gb|ABB54750.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 190/679 (27%), Positives = 328/679 (48%), Gaps = 77/679 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   + N I  L TG+GKT +A++++K    D  + I+S G  K  +F+  
Sbjct: 1   PRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGG--KRALFMCN 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R  T+F+V  Y G +GVD+W    W  EI KN VLV T Q+ LD + +
Sbjct: 59  TVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQ 118

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAM 220
            +++L  +  ++IDECHH TG+HP+ + M+ F   +  K P+V G+T   V+ KG +   
Sbjct: 119 TYVALSSLSVVIIDECHHGTGHHPFREFMRLFTIANQTKLPRVVGLTG--VLIKG-NEIT 175

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKES---CRFYDQ------SKFCGSDL 270
           +   ++ ELE T    + T+ D  EME V + + K +     F  Q      ++   +++
Sbjct: 176 NVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISAEI 235

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           + K  VS    +  +  ++ S+ L C +  D   K+  KQL +     LY + E G+  A
Sbjct: 236 E-KFYVSLDLMNIGVQPIRRSKSLQCLR--DPSKKSFVKQLFN---DFLYQMKEYGIYAA 289

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E++ H++     L D  + D  
Sbjct: 290 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----EKIRHLLVQK--LQDMTYDDDD 343

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            +  ++ V + + + K+   L+ L +SF       + C++FVER    K +      +++
Sbjct: 344 DNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYIQ 403

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L + LT  ++ G +  S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 404 STPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDV 463

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS---- 546
             C++V   D  KT + Y+QS+GRAR   ++F+L       K+R K    I   R     
Sbjct: 464 QACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTAD---KEREKTIQQIYQYRKAHND 520

Query: 547 ----VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
               + D  L + +PE   +K         +  E+ GA +  ++++ ++HRYC+ +P+D 
Sbjct: 521 IAEYLKDRVLEKTEPELYEIKGHFQDDIDPFTNEN-GAVLLPNNALAILHRYCQTIPTDA 579

Query: 602 YYTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVC 649
           +    P F              SA+  +   + +P N   + TI      N   +K    
Sbjct: 580 FGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAA 639

Query: 650 LEACEKLHQVGALNDHLLP 668
            +AC+ L+ +G LN+  +P
Sbjct: 640 FKACKVLYSLGELNERFVP 658



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1187 FLAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNL 1246

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
                 D  +   +    F PR  W+ PG
Sbjct: 1247 LFCLIDADIPKTLNTIQFTPRYTWLPPG 1274



 Score = 43.9 bits (102), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 1306 EYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT 1365
            E  K  P  GE   S  ++  PKALGD+LE+++ AV +D + +L   W +   +  P + 
Sbjct: 1582 EAEKGVPPKGEFNMST-NVDVPKALGDVLEALIAAVYLDCR-DLQRTWEVIFNLFEPELQ 1639

Query: 1366 PDKLELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKA 1423
                ++P   +R+L+E   +   F       +  MV  +     K + + G G  + +  
Sbjct: 1640 EFTRKVPINHIRQLVEHKHAKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQ-- 1697

Query: 1424 AKGKAASQLLKKLEVCE 1440
            AK  AA   L++L  C+
Sbjct: 1698 AKLSAAKHALQQLSKCD 1714


>gi|80979093|gb|ABB54749.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 190/679 (27%), Positives = 328/679 (48%), Gaps = 77/679 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   + N I  L TG+GKT +A++++K    D  + I+S G  K  +F+  
Sbjct: 1   PRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGG--KRALFMCN 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R  T+F+V  Y G +GVD+W    W  EI KN VLV T Q+ LD + +
Sbjct: 59  TVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQ 118

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAM 220
            +++L  +  ++IDECHH TG+HP+ + M+ F   +  K P+V G+T   V+ KG +   
Sbjct: 119 TYVALSSLSVVIIDECHHGTGHHPFREFMRLFTIANQTKLPRVVGLTG--VLIKG-NEIT 175

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKES---CRFYDQ------SKFCGSDL 270
           +   ++ ELE T    + T+ D  EME V + + K +     F  Q      ++   +++
Sbjct: 176 NVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISAEI 235

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           + K  VS    +  +  ++ S+ L C +  D   K+  KQL +     LY + E G+  A
Sbjct: 236 E-KFYVSLDLMNIGVQPIRRSKSLQCLR--DPSKKSFVKQLFN---DFLYQMKEYGIYAA 289

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E++ H++     L D  + D  
Sbjct: 290 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----EKIRHLLVQK--LQDMTYDDDD 343

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            +  ++ V + + + K+   L+ L +SF       + C++FVER    K +      +++
Sbjct: 344 DNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYIQ 403

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L + LT  ++ G +  S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 404 STPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDV 463

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS---- 546
             C++V   D  KT + Y+QS+GRAR   ++F+L       K+R K    I   R     
Sbjct: 464 QACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTAD---KEREKTIQQIYQYRKAHND 520

Query: 547 ----VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
               + D  L + +PE   +K         +  E+ GA +  ++++ ++HRYC+ +P+D 
Sbjct: 521 IAEYLKDRVLEKTEPELYEIKGHFQDDIDPFTNEN-GAVLLPNNALAILHRYCQTIPTDA 579

Query: 602 YYTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVC 649
           +    P F              SA+  +   + +P N   + TI      N   +K    
Sbjct: 580 FGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAA 639

Query: 650 LEACEKLHQVGALNDHLLP 668
            +AC+ L+ +G LN+  +P
Sbjct: 640 FKACKVLYSLGELNERFVP 658



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1187 FLAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNL 1246

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
                 D  +   +    F PR  W+ PG
Sbjct: 1247 LFCLIDADIPKTLNTIQFTPRYTWLPPG 1274



 Score = 43.9 bits (102), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 1306 EYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT 1365
            E  K  P  GE   S  ++  PKALGD+LE+++ AV +D + +L   W +   +  P + 
Sbjct: 1582 EAEKGVPPKGEFNMST-NVDVPKALGDVLEALIAAVYLDCR-DLQRTWEVIFNLFEPELQ 1639

Query: 1366 PDKLELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKA 1423
                ++P   +R+L+E   +   F       +  MV  +     K + + G G  + +  
Sbjct: 1640 EFTRKVPINHIRQLVEHKHAKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQ-- 1697

Query: 1424 AKGKAASQLLKKLEVCE 1440
            AK  AA   L++L  C+
Sbjct: 1698 AKLSAAKHALQQLSKCD 1714


>gi|413918887|gb|AFW58819.1| hypothetical protein ZEAMMB73_957371 [Zea mays]
          Length = 511

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 163/552 (29%), Positives = 263/552 (47%), Gaps = 58/552 (10%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
           CI+FV+RII A+VV + ++ +  L      +L G  + +  ++      ++E F  G+VN
Sbjct: 3   CIVFVKRIIVARVVVQILQNLKCLDFWRCEFLVGCHSGLRNMSRDKMSSIIEKFSSGEVN 62

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           LL AT V EEG+ +  C  V+RFDLP+TV+S+IQSRGRAR   S+++ +LERGN  Q   
Sbjct: 63  LLVATSVGEEGLDIQTCCLVVRFDLPETVNSFIQSRGRARMSKSKYVFLLERGNHSQEKL 122

Query: 537 LFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEM 596
           L D I  E  +      R     F      ++   Y V  TGAS++T  SV+L+HRYC+ 
Sbjct: 123 LDDYITGEIIMDKEINLRTSNDMF----NCLEENIYRVNDTGASISTACSVSLLHRYCDN 178

Query: 597 LPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKL 656
           LP D ++ P P F +    +   C+L LP NA F+ + G    +K+ +K+  CL+AC KL
Sbjct: 179 LPRDIFFVPSPSFFFVDDVDGIVCKLILPPNAAFRQVNGQPCPSKDEAKRDACLKACIKL 238

Query: 657 HQVGALNDHLLPS-----VEEPSENNLISKKNESLPGAGTTKRKELHGT-TPIRALSGRW 710
           H++GAL D LLP      ++  + NN  S K++       + R+EL+    P      R 
Sbjct: 239 HELGALTDFLLPGQGSRKIKVSTTNNSESNKDDD-----ESFREELYEMLIPAVLRPSRC 293

Query: 711 GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV-SKTVKATVSS 769
                  LH Y   F        Y  F L + + L  +    ++EL+L  ++ VKA +  
Sbjct: 294 KLDSSFKLHFYYIEFIPIPADRRYQMFGLFVINRLPEESEKLDVELHLARARIVKAGIKY 353

Query: 770 SGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLL 829
            G++  + ++M  A  FQE+F   L        +S  +  + L     +L   S  YLLL
Sbjct: 354 LGKIEFNKEEMILAHNFQEMFLKVLL------DRSEFTPSYILLGNDGALDMDSTFYLLL 407

Query: 830 PLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGC 889
           P++    +GD    I+W  +  C                        SSP    P     
Sbjct: 408 PIK-QKFYGDNM--IDWPAVKRCL-----------------------SSPAFQDPMGLSL 441

Query: 890 HG----KDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSK 945
           H      + + L  G+ +  ++   +V   HT   + +  I++ ++A+S  +G       
Sbjct: 442 HDSYLPNESLKLLGGTYNKADVIGSLVYTPHTDLFFFVDAILDGTNAKSELNG------A 495

Query: 946 TFVNYFSEKYGI 957
           T+  +F +++G+
Sbjct: 496 TYAEHFKQRHGV 507


>gi|22026807|ref|NP_523778.2| Dicer-2 [Drosophila melanogaster]
 gi|21627058|gb|AAF57830.2| Dicer-2 [Drosophila melanogaster]
 gi|342672109|gb|AEL30809.1| FI15132p1 [Drosophila melanogaster]
          Length = 1722

 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 190/679 (27%), Positives = 328/679 (48%), Gaps = 77/679 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   + N I  L TG+GKT +A++++K    D  + I+S G  K  +F+  
Sbjct: 8   PRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGG--KRALFMCN 65

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R  T+F+V  Y G +GVD+W    W  EI KN VLV T Q+ LD + +
Sbjct: 66  TVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQ 125

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAM 220
            +++L  +  ++IDECHH TG+HP+ + M+ F   +  K P+V G+T   V+ KG +   
Sbjct: 126 TYVALSSLSVVIIDECHHGTGHHPFREFMRLFTIANQTKLPRVVGLTG--VLIKG-NEIT 182

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKES---CRFYDQ------SKFCGSDL 270
           +   ++ ELE T    + T+ D  EME V + + K +     F  Q      ++   +++
Sbjct: 183 NVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISAEI 242

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           + K  VS    +  +  ++ S+ L C +  D   K+  KQL +     LY + E G+  A
Sbjct: 243 E-KFYVSLDLMNIGVQPIRRSKSLQCLR--DPSKKSFVKQLFN---DFLYQMKEYGIYAA 296

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E++ H++     L D  + D  
Sbjct: 297 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----EKIRHLLVQK--LQDMTYDDDD 350

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            +  ++ V + + + K+   L+ L +SF       + C++FVER    K +      +++
Sbjct: 351 DNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYIQ 410

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L + LT  ++ G +  S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 411 STPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDV 470

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS---- 546
             C++V   D  KT + Y+QS+GRAR   ++F+L       K+R K    I   R     
Sbjct: 471 QACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTAD---KEREKTIQQIYQYRKAHND 527

Query: 547 ----VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
               + D  L + +PE   +K         +  E+ GA +  ++++ ++HRYC+ +P+D 
Sbjct: 528 IAEYLKDRVLEKTEPELYEIKGHFQDDIDPFTNEN-GAVLLPNNALAILHRYCQTIPTDA 586

Query: 602 YYTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVC 649
           +    P F              SA+  +   + +P N   + TI      N   +K    
Sbjct: 587 FGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAA 646

Query: 650 LEACEKLHQVGALNDHLLP 668
            +AC+ L+ +G LN+  +P
Sbjct: 647 FKACKVLYSLGELNERFVP 665



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1194 FLAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNL 1253

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
                 D  +   +    F PR  W+ PG
Sbjct: 1254 LFCLIDADIPKTLNTIQFTPRYTWLPPG 1281



 Score = 43.9 bits (102), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 6/134 (4%)

Query: 1309 KSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDK 1368
            K  P  GE   S  ++  PKALGD+LE+++ AV +D + +L   W +   +  P +    
Sbjct: 1592 KGVPPKGEFNMST-NVDVPKALGDVLEALIAAVYLDCR-DLQRTWEVIFNLFEPELQEFT 1649

Query: 1369 LELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKG 1426
             ++P   +R+L+E   +   F       +  MV  +     K + + G G  + +  AK 
Sbjct: 1650 RKVPINHIRQLVEHKHAKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQ--AKL 1707

Query: 1427 KAASQLLKKLEVCE 1440
             AA   L++L  C+
Sbjct: 1708 SAAKHALQQLSKCD 1721


>gi|16215719|dbj|BAB69959.1| double-strand-specific ribonuclease [Drosophila melanogaster]
          Length = 1722

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 190/679 (27%), Positives = 328/679 (48%), Gaps = 77/679 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   + N I  L TG+GKT +A++++K    D  + I+S G  K  +F+  
Sbjct: 8   PRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGG--KRALFMCN 65

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R  T+F+V  Y G +GVD+W    W  EI KN VLV T Q+ LD + +
Sbjct: 66  TVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQ 125

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAM 220
            +++L  +  ++IDECHH TG+HP+ + M+ F   +  K P+V G+T   V+ KG +   
Sbjct: 126 TYVALSSLGVVIIDECHHGTGHHPFREFMRLFTIANQTKLPRVVGLTG--VLIKG-NEIT 182

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKES---CRFYDQ------SKFCGSDL 270
           +   ++ ELE T    + T+ D  EME V + + K +     F  Q      ++   +++
Sbjct: 183 NVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVLVSFPHQEQVLTVTRLISAEI 242

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           + K  VS    +  +  ++ S+ L C +  D   K+  KQL +     LY + E G+  A
Sbjct: 243 E-KFYVSLDLMNFGVQPIRRSKSLQCLR--DPSKKSFVKQLFN---DFLYQMKEYGIYAA 296

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E++ H++     L D  + D  
Sbjct: 297 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----EKIRHLLVQK--LQDMTYDDDD 350

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            +  ++ V + + + K+   L+ L +SF       + C++FVER    K +      +++
Sbjct: 351 DNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYIQ 410

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L + LT  ++ G +  S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 411 STPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDV 470

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS---- 546
             C++V   D  KT + Y+QS+GRAR   ++F+L       K+R K    I   R     
Sbjct: 471 QACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTAD---KEREKTIQQIYQYRKAHND 527

Query: 547 ----VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
               + D  L + +PE   +K         +  E+ GA +  ++++ ++HRYC+ +P+D 
Sbjct: 528 IAEYLKDRVLEKTEPELYEIKGHFQDDIDPFTNEN-GAVLLPNNALAILHRYCQTIPTDA 586

Query: 602 YYTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVC 649
           +    P F              SA+  +   + +P N   + TI      N   +K    
Sbjct: 587 FGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAA 646

Query: 650 LEACEKLHQVGALNDHLLP 668
            +AC+ L+ +G LN+  +P
Sbjct: 647 FKACKVLYSLGELNERFVP 665



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1194 FLAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNL 1253

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
                 D  +   +    F PR  W+ PG
Sbjct: 1254 LFCLIDADIPKTLNTIQFTPRYTWLPPG 1281



 Score = 42.7 bits (99), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 12/137 (8%)

Query: 1309 KSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDK 1368
            K  P  GE + S  ++  PKALGD+LE+++ AV +D + +L   W +   +  P +    
Sbjct: 1592 KGVPPKGEFSMST-NVDVPKALGDVLEALIAAVYLDCR-DLQRTWEVIFNLFEPELQEFT 1649

Query: 1369 LELP--PLRELIELCDS---LGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKA 1423
             ++P   +R+L+E   +    G  + E  T+   MV  +     K + + G G  + +  
Sbjct: 1650 RKVPINHIRQLVEHKHAKPVFGSPIVEGGTV---MVSCQFTCMEKTIKVYGFGSNKDQ-- 1704

Query: 1424 AKGKAASQLLKKLEVCE 1440
            AK  AA   L++L  C+
Sbjct: 1705 AKLSAAKHALQQLSKCD 1721


>gi|358396694|gb|EHK46075.1| hypothetical protein TRIATDRAFT_292263 [Trichoderma atroviride IMI
           206040]
          Length = 1456

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 192/690 (27%), Positives = 316/690 (45%), Gaps = 95/690 (13%)

Query: 8   LKRSFGEVHSPNPPDMGSSGH-------DHAVDGPSSSTNSINFIPRIYQLKVFEVAKRR 60
           L+++  EV + +  DMGS          D  + G   S+  I   PR YQ+ ++E AK  
Sbjct: 7   LEKNQKEVLAASKADMGSRLERLEKIPVDKLLRG---SSERIIASPREYQIDLYERAKNE 63

Query: 61  NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK----KLIIFLAPTVHLVHQQYDVIRVH 116
           NTI VL+TG GKT+IA +L++ + +    N  K    K   F+   V L  QQY V+  +
Sbjct: 64  NTIVVLDTGTGKTLIAALLLRRVLEVEIENREKGYTPKSAFFIVEKVALCFQQYAVLTSN 123

Query: 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDE 176
            +F + + +G    D  D + W+++ ++N   V T Q LL      F+S+D V  +V DE
Sbjct: 124 LEFPIGKIFGDMNGDIGDPEFWRQQFSENMAFVCTAQTLLSMFGAGFISMDRVNLLVFDE 183

Query: 177 CHHATGNHPYTKIMKEFYHKSDN-KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS 235
            HH   NH Y +IM E+Y + +N +P++ GMTASPV     +S  D      +LE  L  
Sbjct: 184 AHHTKKNHAYARIM-EYYPRWENERPRILGMTASPV----DTSKGDVRIAAMDLEEMLCG 238

Query: 236 QVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNC 295
           ++ TI D+       P   ++  + + S+  G + + K  +S++K  +S+          
Sbjct: 239 KIATISDED------PEHSKTNLWEEISRCIGRNPQFKAHLSFTKEASSV---------- 282

Query: 296 YKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355
                     L    +D + ++L   DE+  I A          VL + E          
Sbjct: 283 ----------LGTWCADRYWQLLTTNDEMVKIEAKTGRDTLDLDVLDSDEAI-------- 324

Query: 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFD--YSKAVDLGYISTKLHELLQLFLSFGKST 413
                         +A+  A  I  D  F+   +   DL      LH++L    +F +  
Sbjct: 325 --------------AAVSRARDIIRDHQFEPITNNWSDLSPKVKTLHQILG--NAFSQRL 368

Query: 414 QVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEV--LESF 470
              CI+FVE R  A  + + F +    +  +  AY+ GS  +  A    ++ +V  L+ F
Sbjct: 369 SKRCIVFVEQRTTAFLLADLFKQPGMSIPGMRTAYMIGSNATSGAANMSLKDQVVSLQKF 428

Query: 471 RGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGN 530
           + G+ N LFAT V EEG+ VP C  ++RFDL  +   YIQS+GRARQ +  ++ ++E  N
Sbjct: 429 KRGEFNCLFATSVAEEGIDVPECDVIVRFDLCVSAIQYIQSKGRARQSSFLYVTLVESKN 488

Query: 531 LKQRNKL-------FDIIRSERSVTDTALSRD----PEACFLKACTYVKTKSYIVESTGA 579
           +    K        F++ R  R++ +     D    PE   L++C     ++ I   +G 
Sbjct: 489 IHHHRKFQQAKSAAFELQRFCRALPEDRKVEDFDVRPEV--LQSC-----ETIIATESGG 541

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSR 639
            +    S+  + +Y   L  D     K  +  KS ++ +   + LP  +P +TI G + R
Sbjct: 542 GLKLVDSLACLAKYTSSLSRDGLQ--KIEYVVKSDKKQFIASVVLPDGSPIKTIQGISQR 599

Query: 640 NKNLSKQLVCLEACEKLHQVGALNDHLLPS 669
            K L++     EAC  L + G ++ HL P+
Sbjct: 600 TKQLARCSAAFEACRILIEKGYIDKHLRPA 629



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 130/327 (39%), Gaps = 71/327 (21%)

Query: 1010 ELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTL 1069
            E LV   +PI +V    LLP VM R++S+++AS++     C   +  I   L LEA+T  
Sbjct: 909  EPLVVSPLPIDIVFMALLLPVVMYRIDSVLIASEV-----CSLVDLAIRPELALEAITK- 962

Query: 1070 GCCESFSME------------------RLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
               +SF+ E                  RLE LGD+ LK A +  ++  YP ++E +   +
Sbjct: 963  ---DSFNTEEHGEDQVDFQPGMGKNYERLEFLGDTFLKMATTISVYTLYPHENEFEYHVK 1019

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGK 1171
            R   + N  L     ++KL GYIR  AFD R W                      P D +
Sbjct: 1020 RMLMLNNKNLFTHAIEKKLPGYIRTRAFDRRTW---------------------YPSDLR 1058

Query: 1172 FFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG-------LIAALYMMKWL 1224
                       +   + H     K+IAD  EALIGA Y+ G         + A+  M   
Sbjct: 1059 LKKGKATKAKARRHCLSH-----KSIADVCEALIGAAYLTGKSNNSMDMAVKAVTAMVSS 1113

Query: 1225 GIDADLEVSLVDDCITRASLRSYVPRI---NEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281
                 +  S      T     +Y P     N ++ I   IGY F    LL+ A  H+S  
Sbjct: 1114 ENHTMINFSDYRARYTTPEWHTYEPNAAQRNMVERIAEIIGYRFQCAPLLRSAFKHSS-- 1171

Query: 1282 EFYCYQNL----YKHLQHCSTLLLSQI 1304
              Y Y+      Y+ L+     L+  +
Sbjct: 1172 --YVYEEKIRRDYQQLEFLGDALIDMV 1196


>gi|198457361|ref|XP_001360634.2| GA19635 [Drosophila pseudoobscura pseudoobscura]
 gi|198135949|gb|EAL25209.2| GA19635 [Drosophila pseudoobscura pseudoobscura]
          Length = 1720

 Score =  218 bits (554), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 187/674 (27%), Positives = 316/674 (46%), Gaps = 64/674 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   + N I  L TG+GKT +A++ +K    D+ ++I+  G  K  IF+  
Sbjct: 8   PRSYQLRLVDHITKNNGIIYLPTGSGKTYVAILALKRFSKDMDKSIEEGG--KRAIFMCN 65

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R  ++ +V  + G +GVD+W    W  EI+ + VLV T Q++L+ + +
Sbjct: 66  TVELARQQAMAVRKFSNLKVGFFVGEQGVDDWSKIKWSHEISDSQVLVGTAQVMLNMVTQ 125

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASPVVRKGVSSA 219
            +L L  V  ++IDECHH TG+HPY + M  F     N   P+V G+T   V+ KG    
Sbjct: 126 KYLELSSVSIVIIDECHHGTGHHPYHEFMHLFLLADRNTPLPRVVGLTG--VLIKGNEFK 183

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEME-VFVPSAK-ESCRFYDQSKFCGSDLKGKLEVS 277
           +  + ++ ELE+T  S + T+ D  E++ V + S K   C     ++    ++   +   
Sbjct: 184 LVAQ-KLRELETTYRSNIITVSDTEELKNVMLYSTKPRECLVTYPNQVGSLEIGHAIHRC 242

Query: 278 WSKFDASLSKLQ-GSQLNCYKD----MDDKHKT--LRKQLSDYHAKILYCLDELGLICAY 330
              F   L  L+ G Q   Y      + D HK   ++  L+D+     Y L+  G+  A 
Sbjct: 243 IEHFYVRLDDLEIGKQPTRYSKGLSTLRDPHKKGYIKTLLNDFQ----YQLENYGVYAAA 298

Query: 331 EA-VKICLEKVLKAQEE-----CEIYRQSSLQCKYFLEEVLHVIGSAL-PLADKIFLDFG 383
            A V + LE  +K  +        IY+ +   C      + H++   L  L D       
Sbjct: 299 MAIVSVILEFEIKLHQSETLALTHIYKLAICMCN----RINHMLKKKLRDLVDDDTEPDD 354

Query: 384 FDYSKAVDLGYISTKLHELL---QLFLSFGKSTQVLCIIFVERIIAAK----VVERFVKK 436
             +++   + + + K+   L   Q   S   +  + C++FVER   +K    ++++F+  
Sbjct: 355 AVHTEETIINFSTPKVQRFLHYVQKTFSGKNAKDICCLVFVERRYTSKCIYQLLKKFIAA 414

Query: 437 VPFLTHLTVAYLTGSTTSVDA-----LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
           +P L  + V        SV A     L  K QK  +  F+ G+ NL+  + V+EEG+ V 
Sbjct: 415 IPALRDVLVPQFMVGRNSVTADCESVLERKWQKSAIHQFKDGEANLMVCSSVLEEGIDVK 474

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS----- 546
            C+YV+  D  KT + Y+Q++GRAR  ++QF+L     +  + N+  +  R   +     
Sbjct: 475 ACNYVLILDPIKTFNMYVQTKGRARSKDAQFVLFSSDLDRIKTNQQINQYRQAHTDIGEY 534

Query: 547 VTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPK 606
           + D  L R        A  + +     +   GA +   S++ L+HRYC+ LPSD +   +
Sbjct: 535 LKDRVLDRAEPLMQEIADHFHELIPPFINEKGAVLLPSSALILLHRYCQSLPSDAFGFVE 594

Query: 607 PIFKYKSAEEAYECELTLPSNAPFQTIVGPTS---RNKNLSKQLVCLEA---------CE 654
           P     S ++  E   T  ++  F +I  P S   R+   S  +  ++A         C 
Sbjct: 595 PWITLISWDQKRELFGTQAASKEFVSIELPLSSSVRDIFYSDPMTSVKAAKISAAFKTCI 654

Query: 655 KLHQVGALNDHLLP 668
           KL+  G LN+  LP
Sbjct: 655 KLYSTGELNERFLP 668



 Score = 71.2 bits (173), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 150/392 (38%), Gaps = 82/392 (20%)

Query: 998  TKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHI 1057
            T+ P M+    P LL      + + +SL +LP +M+ +    +          H   F  
Sbjct: 1153 TRSPAMNPAARPALLPPTSSAL-IPQSLNVLPVLMKSVSDDHITP-------AHQGEF-- 1202

Query: 1058 PSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1117
                 L A+TT G  + + MER ELLGDS LK + S +L   YP  +EG L+  +S  V 
Sbjct: 1203 -----LAAITTAGSADVYDMERAELLGDSFLKMSASLYLASRYPDWNEGTLTQVKSRLVS 1257

Query: 1118 NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQ-- 1175
            N  L     +  +   I  S FDPR       L+  P       D L+V  +   F +  
Sbjct: 1258 NKNLMYCLRETDIPSRISCSLFDPR-------LTWLPPSINLPEDVLDVWTEQPSFAKLI 1310

Query: 1176 -----------DTKVVVGKPCD-------------------------------MGHRWMG 1193
                       D +++ G+ C+                                G   + 
Sbjct: 1311 GPHNLFDLALSDEEILAGR-CNEDTYRRFVHGCKSNQQGYYAGRDFSSGVNYFFGEVTVQ 1369

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGI---DADLEVS-LVDDCITRASLRSYVP 1249
            +K +AD  EAL+G      GL     M+++ GI   D D  +S L+D  +    +R+   
Sbjct: 1370 NKVMADTLEALLGVIVRNYGLQHGFRMLEYFGICKPDVDKPLSQLLDLQLKSTKMRANAS 1429

Query: 1250 -------RINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNLYKHLQHCSTL 1299
                    IN    +E  +GY+F  +  L +A+TH S        CYQ L          
Sbjct: 1430 PGDIDGFLINH-SYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDF 1488

Query: 1300 LLSQITEYVKSFPKPGETTDSGPSMKAPKALG 1331
            L+S       +  +PGE TD   ++     LG
Sbjct: 1489 LISAYIFENNNKLRPGELTDLRSALVNNTTLG 1520


>gi|115387529|ref|XP_001211270.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114195354|gb|EAU37054.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1344

 Score =  218 bits (554), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 218/806 (27%), Positives = 357/806 (44%), Gaps = 85/806 (10%)

Query: 15  VHSPNPPDMGSS--GHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGK 72
           V+SP  P+   S       +   +S T  +N  PR YQ+++FE AK +NTIAVL+TG+GK
Sbjct: 78  VNSPVKPNQAQSELSISSLIGRNASGTGILN--PREYQIELFERAKVQNTIAVLDTGSGK 135

Query: 73  TMIAVMLIKDIAQA---IKSNGFK-KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAK 128
           T+IAV+L+K + Q     ++NG   ++  FL  +V LV+QQ  V+R + D  V  ++GA 
Sbjct: 136 TLIAVLLLKHVIQTELIDRANGNPPRISFFLVDSVTLVYQQASVLRNNLDQNVAHFFGAM 195

Query: 129 GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTK 188
           GVD W+ Q W +   KN V+V T +IL   L  A++++  +  +V DE HH   +HPY +
Sbjct: 196 GVDLWNKQTWAEHFEKNMVIVCTAEILNQCLLNAYITMQQINLLVFDEAHHTKKDHPYAR 255

Query: 189 IMKEFYHK--SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEM 246
           I+++ Y +    ++P++FGMTASPV  KG     D       LE+ LDS++ T    T +
Sbjct: 256 IIRDSYLRVPPSSRPRIFGMTASPVDTKG-----DVLEAARNLEALLDSKIATTSKLTIL 310

Query: 247 EVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTL 306
              V    E    YD           KL+ +   F + L KL  S+      ++   +  
Sbjct: 311 RQVVNRPNEEVWIYD-----------KLQPT---FTSDLYKLMESRFGDISHLEPMFRFA 356

Query: 307 RKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI--YRQSSLQCKYFLEEV 364
           R   S           ELG  CA       L   +  + E  I   RQS+   +  L + 
Sbjct: 357 RHATS-----------ELGTWCADRVWVSALADDVLPKVEGSIGGKRQSTGLGQ--LPKD 403

Query: 365 LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELL-QLFLSFGKSTQVLCIIFVER 423
           +H   + +  A ++      +   A +   +S+K+  L  ++   FG+ T   CI+F E+
Sbjct: 404 VHRDITRIKEASELVESHPPNDPGAPEA--LSSKVRVLWKEISQCFGQETNTKCIVFTEK 461

Query: 424 IIAAKVVERF--VKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFAT 481
              AKV+     V  VP L    +  +  S      +T + Q   +  FR G++N LFAT
Sbjct: 462 RYTAKVLFDLFTVLNVPGLRPGVLIGVRSSDRIGMNVTFRQQILTMVRFRTGEINCLFAT 521

Query: 482 DVIEEGMHVPNCSYVIRF---DLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF 538
            V EEG+ +P+C+ V+     D     S  +Q    A +    F  +L            
Sbjct: 522 AVAEEGLDIPDCNLVVSMIEKDNADHESILVQVND-AEKIMQSFCQLLPEDR-------- 572

Query: 539 DIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLP 598
            I+      TD  L R+              + Y + ST A +T  S++ ++ RY   L 
Sbjct: 573 -ILHGNDDDTDAVLDREEWE-----------EPYTLPSTAARLTHHSAITVLARYASSLQ 620

Query: 599 SDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQ 658
            +   + +  +      +AY CE+ LP  +P +   G  +  K+ +K+    EAC  L +
Sbjct: 621 YENDTSAQVTYVVLPVNDAYVCEVILPEKSPIRGATGMPAMKKSTAKRYAAFEACRLLRK 680

Query: 659 VGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVI- 717
              L+++L           L + +N  L  A T+ R   +   P  +L   W ++ GVI 
Sbjct: 681 HRLLDEYL----NSVYHRRLPAMRNARL--AITSHRTNEYKILPKSSL---WNKQIGVIP 731

Query: 718 --LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHL 775
             L+    +           G ++L   +       F + L    +T+  TV  + ++  
Sbjct: 732 GKLYGTVISLKPLTPLAREHGSMILFTRDRLPQFPTFPIFLGEDVETIVLTVPVNMELQP 791

Query: 776 DADQMSKAKCFQELFFNGLFGKLFVK 801
            AD++     F    F  +F K + K
Sbjct: 792 SADELDYMTTFTLRIFRDVFRKTYDK 817



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 129/343 (37%), Gaps = 74/343 (21%)

Query: 1028 LPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT----------------TLGC 1071
             P+++ RL++ ++  +      C      I     LEALT                  G 
Sbjct: 987  FPAIISRLDAYLIGLEA-----CKKLGLEISLEYALEALTKDSDNTHEHRSQQVHMQRGM 1041

Query: 1072 CESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQ 1131
             +++  ERLE LGD  LK A S  LF  +P  +E      R   +CN  L      ++L 
Sbjct: 1042 GKNY--ERLEFLGDCFLKMATSISLFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELY 1099

Query: 1132 GYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRW 1191
             +IR   F    W   G L+L               L G+    D    +G         
Sbjct: 1100 QFIRSRGFSRDTWYPEG-LTL---------------LQGR----DHSKKIGSESKHA--- 1136

Query: 1192 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITR--ASLRSYV- 1248
            +  KTIAD  EALIGA  +  G      M    G+ A   VS V D      AS R Y+ 
Sbjct: 1137 LAEKTIADVCEALIGAALLTPGPQHRFDM----GVRA---VSAVVDSNEHNAASWRDYIS 1189

Query: 1249 -----------PRINEI---KDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQ 1294
                       P  +EI   + +E K+GY F    LL  A TH S    +     Y+ L+
Sbjct: 1190 LYSIPKYQEQAPDGSEIDLCRRVEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLE 1249

Query: 1295 HCSTLLLSQ--ITEYVKSFP--KPGETTDSGPSMKAPKALGDL 1333
                 LL    + +  + FP   P   T+   +M + K LG L
Sbjct: 1250 FLGDALLDMVCVEDLFRRFPDRDPQWLTEHKMAMVSNKFLGAL 1292


>gi|291000766|ref|XP_002682950.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi]
 gi|284096578|gb|EFC50206.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi]
          Length = 1386

 Score =  217 bits (553), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 318/1426 (22%), Positives = 551/1426 (38%), Gaps = 313/1426 (21%)

Query: 74   MIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---HTDFEVEEYYGAKGV 130
            M+A+MLI  +    + N   K ++F+A    LV+QQ + IR    + + E  E   +K +
Sbjct: 1    MVAIMLIDYMLNETEQND--KKLVFIAENRILVNQQAEHIRSTLKYLETERLEQQDSKSI 58

Query: 131  DEWDSQ------CW------------QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFI 172
            D           C+             KE+ K  V+V T   L + L    + ++ +  +
Sbjct: 59   DNISKNIDGMVACYVGDSGLLNKLRSNKELKKKKVIVTTAAFLQNLLTHNIIEMESISLL 118

Query: 173  VIDECHH-ATGNHPYTKIMKEFYH---KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISE 228
            +IDECHH   G+HPY  IM ++YH   + + +PK+FGMTAS +     + A     Q  +
Sbjct: 119  IIDECHHCGDGDHPYKVIMTQYYHTIKQVEKRPKIFGMTASAIRSLNETKA---NLQKQK 175

Query: 229  LESTLDSQVFTIEDKTEME---------------VFVPSAKESCRFYDQSKFCGSDLKGK 273
            LE+ LD ++ TI  + E+                 +  +  ES +  D   FC   ++  
Sbjct: 176  LEAYLDCKLTTISSEDELYSELREHTNLPNEIILTYESTNSESTKIDDLKDFCTLIVEN- 234

Query: 274  LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
                       L+K    Q    KD+ +  + L    +D++    Y LD LG  C  + +
Sbjct: 235  -----------LTKFSTIQT---KDIIEISRIL---FNDFN----YILDNLGSSCLKDYL 273

Query: 334  KICLEKVLKAQEECEIYRQSSL----------QCKYFLE-EVLHVIGSALPLADKIFLDF 382
             I  + + + ++E +    S L          Q K   E E++        L +KI   F
Sbjct: 274  TIIFDHIEERKQENQSLSTSELVSFSSDSSYQQLKKNQEFEIIVSESVRNKLTNKIEKIF 333

Query: 383  GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
                S +  L  +   L+E    F     + Q+ CI+F ER   A ++ R+  K      
Sbjct: 334  P-KPSPSRKLKLLEEVLNEH---FPENNTTNQMRCIVFCERRHTAILLSRYFAKKGLPCD 389

Query: 443  LTVAYLTGSTTSVDALTPKV---QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
              + +   S  +           QK   E FR G++  LF T+V+EEG  VP C+ VIRF
Sbjct: 390  FIIGHNALSVRTKLGFKKNTGFEQKSKTERFRSGELKCLFCTNVVEEGFDVPACNLVIRF 449

Query: 500  D-LPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEA 558
            D     + +YIQSRGRAR+  S+FI+M+   +L Q+    +  R +  +        P  
Sbjct: 450  DKFTDFLRAYIQSRGRARKQESKFIMMVNSTDLTQQELCKNGKRLQEKMLTQISDDTPNN 509

Query: 559  CFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAY 618
              ++     +T S       A +T ++S+ L ++YC + P+      KP F   +    +
Sbjct: 510  SEIEDILIYETPS------KAKLTLNNSIRLYNQYCAVFPNQSIDEKKPKFSIYADGPFF 563

Query: 619  ECELTLPSNAPFQTIVGPTSR---------NKNLSKQLVCLEACEKLHQVGALNDHLLPS 669
              E+T P+N P        +          NK +SK+    +A + LH+   L+D L P 
Sbjct: 564  VTEITFPTNCPVPVFSISNNHEDDPAQYRLNKLVSKRYCAFKAVQLLHKYKELDDSLFPR 623

Query: 670  ----VEEPSENNLISKKNES-----LPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHA 720
                V   +E    S  + +     +P     + K+L+      ++       C  I   
Sbjct: 624  YSKYVFASTEAEFASPASMATLLPQMPEIFNWREKKLN------SIQTDNPSHCVYIYDI 677

Query: 721  YKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQM 780
            +  N A        + F  +I +E+D+D+    L  + ++     T+       +D D +
Sbjct: 678  FLDNNA--------TDFQFIIPNEIDSDLEELGLLNFRMNGGRHITIKKMESTTVDNDYI 729

Query: 781  SKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDG 840
             K   + E  FN +    F   K    ++          W+    + ++P +    F D 
Sbjct: 730  LKCFEYHEFMFNKVAKISFPDQKQRNLQD----------WT----FFIIPKQAQQHFIDV 775

Query: 841  SWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANG 900
                      P   +++                                HGK+  ++   
Sbjct: 776  ----------PVLDIIQH-------------------------------HGKEAENI--- 791

Query: 901  SVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLI 960
                  LK+M++  I+  R+Y +  I  + + +S FD     D KT   Y+ EK+G+ + 
Sbjct: 792  ------LKNMILETIYNHRVYLLQNIEFDKNPKSHFDTEDFPDYKT---YYKEKWGLEIE 842

Query: 961  HPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPIS 1020
             P QPLLR  Q          F+  G           T+    ++ + PE L      I 
Sbjct: 843  RPQQPLLRAYQPR--------FSTLGS----------TQVEHQNIFLVPEFLTACSFTIE 884

Query: 1021 VVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHI-----------------PSSLIL 1063
            +++ L L P  + R  + ++ S         S+ F +                    L+ 
Sbjct: 885  MLRFLKLAPEFLYRYYNRLITS-------IFSKQFELFQPIVDATLLEDGKTLEAFELLE 937

Query: 1064 EALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHK 1123
            EALT        + E+LE  GDS+LKY VS H++  +P    G LS  +   V N  L  
Sbjct: 938  EALTAKRSQVGANYEKLEFFGDSILKYIVSKHIYHEFPLYSSGSLSQLQHKFVSNYFLAS 997

Query: 1124 LGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDT-KVVVG 1182
            +  + +L  +I                             +  PL+     Q+       
Sbjct: 998  VARNTRLPLFI-----------------------------ITEPLNTSQLVQNIGGFKSN 1028

Query: 1183 KPCDMGHRWMGSKTIADCAEALIG-AYYVGGGLIAALYMMKWLG-IDADL---EVSLVDD 1237
            K  D  +     K +AD  E++IG  Y++ GG +  +   ++LG +   L   E+S  +D
Sbjct: 1029 KFADETNIEAEYKVLADVVESIIGFCYHIFGGSLEQI--NRFLGLVGVSLPKGEISGSED 1086

Query: 1238 CITRAS--LRSYVPRIN-EIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNL----- 1289
                    LR++  ++  ++  +  K+ ++F    LL EA  H S    + Y+ L     
Sbjct: 1087 IFMNQKLLLRNHFEKLKIDLYKLTEKLNFQFENSGLLLEAFIHPSYNGVFNYERLEFLGD 1146

Query: 1290 -----------YKHLQHCSTL---LLSQITEYV---KSFPK------------------P 1314
                       ++     S+    ++S++ E +   K+F                     
Sbjct: 1147 SVLGLIVTSKIFEKFHKNSSFSLGMMSKLREKIVMNKNFANLCIENQLQNYIIFSGNHIA 1206

Query: 1315 GETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
             +   S    +  K L D+ ES+ GA+ +D+  +LD V  I+   L
Sbjct: 1207 QQVVHSKDDGEYVKMLSDVFESLAGALFVDSHYDLDTVKLIYDEFL 1252


>gi|194755862|ref|XP_001960198.1| GF13246 [Drosophila ananassae]
 gi|190621496|gb|EDV37020.1| GF13246 [Drosophila ananassae]
          Length = 1727

 Score =  217 bits (553), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 274/1099 (24%), Positives = 459/1099 (41%), Gaps = 168/1099 (15%)

Query: 46   PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
            PR YQL++ +   R+N I  L TG+GKT +A++ +K    D+ + I+  G  K  IF+  
Sbjct: 13   PRSYQLRLVDHITRQNGIIYLPTGSGKTFVAILALKRFSQDMDKTIEDGG--KRAIFMCN 70

Query: 102  TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
            TV L  QQ   I+  T+ +V  Y G +GVD+W    W+ EI    V+V T Q++LD   +
Sbjct: 71   TVELARQQAVAIKRFTNLKVGFYVGEQGVDDWPRGQWETEIRDKQVMVGTAQVMLDVFTQ 130

Query: 162  AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAM 220
              + L  V  ++IDECHH TG+HP+ + M+ F + S N+ P+V G+T   V+ KG +   
Sbjct: 131  RHMELKSVSIVIIDECHHGTGHHPFHEFMRLFLYGSSNELPRVVGLTG--VLIKG-NEVK 187

Query: 221  DCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKESCRFYDQSKFCGS-DLKGKLEVSW 278
            +   ++ +LE+T    + T+ D  ++E V + S K           C    L   +E   
Sbjct: 188  NVARRLKDLETTYRGNIITVSDTADLENVMLHSTKPKEYMIQYPAQCQKYSLVADVERMI 247

Query: 279  SKFDASLSKLQ-GSQLN----CYKDMDDKHK--TLRKQLSDYHAKILYCLDELGLICAYE 331
              F A L +L  G Q         ++ D HK   ++   +D+  +++    E G+  A  
Sbjct: 248  FNFFAVLDQLDIGVQPQRRSKGLMNLRDPHKKSAIKALFNDFKFQMV----EYGVYAASI 303

Query: 332  A-VKICLE-KVLKAQEEC----EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            A V + +E +V K Q E      +YR +   C    +++ H++   L        +    
Sbjct: 304  AIVSLSVEFEVKKRQAETISLKTMYRAAISMC----DQIRHILVRKLRDLVDDDDETDEK 359

Query: 386  YSK-AVDLGYISTKLHELLQLF---LSFGKSTQVLCIIFVERIIAAK----VVERFVKKV 437
             +   + + + + K+   LQ      +  +   + C++FVER   AK    +V  F++  
Sbjct: 360  TNTYEIIMNFSTPKVQRFLQYLKQTFAGKQPKDICCLVFVERRYTAKCIFGLVLHFIQAT 419

Query: 438  PFLTHLTVAYLTGSTTSV-----DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPN 492
            P L  + V        S+       L  K QK  ++ FR G+ NL+  + V+EEG+ V  
Sbjct: 420  PELRDVLVPQFMVGRNSISQDFESVLEGKFQKSAIQQFRDGEANLMICSSVLEEGIDVQA 479

Query: 493  CSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS-VTDTA 551
            C+YV+  D  KT + Y+Q++GRAR   + FI+     N  + +K     R   S +++  
Sbjct: 480  CNYVLILDSLKTFNMYVQTKGRARSKEAVFIIFSADANTGEVSKQIGQYRQAHSDISEYL 539

Query: 552  LSRDPEACFLKACTYVKTKSYIV----ESTGASVTTDSSVNLIHRYCEMLPSDKY----- 602
              R  E          +    I+       G+ +   +++ L+HRYC+ LPSD +     
Sbjct: 540  KGRVLERALPLPNEITEHFQDIIPPFKNEHGSILLASNALILLHRYCQSLPSDAFGFVVP 599

Query: 603  ----YTPKPIFKY--KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEACEK 655
                  PK   K   KSAE      + LP  +  + TI          +K      AC+ 
Sbjct: 600  WINLVEPKERVKRFGKSAEYKQVVSIVLPLTSSLKDTIYSYPMDCVKSAKVSAAFNACKL 659

Query: 656  LHQVGALNDHLLPSVEEPSENNLISKKNESLPGAG-----TTKRKELHGTT-----PIRA 705
            L+++G L +  LP   +     +     E     G     T+K KE    T     P   
Sbjct: 660  LYELGELGEKFLPITAKERVAAIADVHFEHWKKYGDDVTKTSKEKENQVRTYRTGCPEEF 719

Query: 706  LSG--RWGEKCGVILHAYKF----NFACSIVTE-IYS------GFVLLIESELDNDVGNF 752
            +    R GE C    +AY+     +F  +  TE +Y        + LL+ ++L       
Sbjct: 720  MDAMPRVGEVC----YAYEIFLEPHFERNDYTEHVYDNLQTPRNYALLLRNKLPRLA--- 772

Query: 753  ELELYLVSKTVKATVSSS-GQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFF 811
            E+ L+     +   V+S   ++ LD+D   K +  Q+ F   +F                
Sbjct: 773  EMPLFCNQGKLHVRVASEPREIVLDSD--IKVELLQQ-FHVTIF---------------- 813

Query: 812  LKRETNSLWSPSYM---------YLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEK 862
              R    +W P ++         YL++PL +     +    I+W  +    S+ E +K+ 
Sbjct: 814  --RSILRIWQPFFVFDRLARENSYLVVPLAVGAAKAEV---IDWPLVTKFQSLPE-VKKS 867

Query: 863  SFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYS 922
            S     +              PC     GK V    +   +    K M+V  +H      
Sbjct: 868  SVQQRKEA-----------PPPCPEDFEGKIVTQWYSNYEE----KRMLVTKVH------ 906

Query: 923  IVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVL---IHPGQPLLRLKQSHNPHNLL 979
                  + +  S  + N  D  KT+  +   KY   +   +H  Q L+ +++     N  
Sbjct: 907  -----RDLTPYSYMEKNHQD--KTYYTFTMSKYSNHIGDVVHKDQFLIEVRELTEQLNFY 959

Query: 980  VNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLM 1039
            V        GK S       K +  V + PEL    D P  V   +  LPS+++RL  L+
Sbjct: 960  VQ-----QRGKSSAQS----KARAKVVLIPELTFNFDFPGDVWLKMIFLPSILRRLHFLL 1010

Query: 1040 LASQLREEINCHSRNFHIP 1058
             A  LR+  N +    H+P
Sbjct: 1011 HAEALRKRFNAYLGLQHLP 1029



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 138/337 (40%), Gaps = 65/337 (19%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLAS----QLREEINCHS------RNFHIPS---SLIL 1063
            +P+  +  +     V + L +LM AS    Q+ ++++  S       N HI +   S  L
Sbjct: 1146 IPLGSIYDVRSTDVVKENLPALMPASGFKPQVHQDVSYLSILQKSMSNEHITAAEQSEFL 1205

Query: 1064 EALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHK 1123
             A+TT G  + F MERLE+LGDS LK + S +L   Y   +EG L+  +S  V N  L  
Sbjct: 1206 AAITTSGSADVFDMERLEMLGDSFLKMSGSLYLANRYADWNEGTLTQVKSKLVSNRNLLY 1265

Query: 1124 LGTDRKLQGYIRDSAFDPR-RWVAPG---------------------------QLSLRP- 1154
              ++  +   I  S F P+  W+ PG                            L+L   
Sbjct: 1266 CLSETDIPTRISSSLFTPKYTWIPPGVSLPRNVLALWNNKPDVAKLVGPHNLRDLTLTDE 1325

Query: 1155 ---VPCECGVDTLEVPLDG-----KFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
               +   C   TL   +DG          DT         +G   +  K +AD  EAL+G
Sbjct: 1326 ESLITGTCSESTLSTFMDGCRKNMSSHHADTDFSAELNFCIGRANIADKVVADTLEALLG 1385

Query: 1207 AYYVGGGLIAALYMMKWLGI-DADLE---VSLVDDCITRASLRSYVPR-------INEIK 1255
                  GL     M+++ GI  AD+      L+D  +  A++R+ V         IN   
Sbjct: 1386 VVVKNYGLTHGFRMLEYFGICKADIGKPLTQLLDLRLGGANMRTNVSTTEIDSFLINH-A 1444

Query: 1256 DIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
            ++E  +GY F  +  L +A+TH S        CYQ L
Sbjct: 1445 NLEQNLGYTFKDRGYLLQALTHPSYPTNRITGCYQQL 1481


>gi|380481939|emb|CCF41547.1| RNase3 domain-containing protein [Colletotrichum higginsianum]
          Length = 1588

 Score =  217 bits (553), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 179/656 (27%), Positives = 311/656 (47%), Gaps = 84/656 (12%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA----IKSNGFKKLIIFLAP 101
           PR YQ+++FE AK++NTI VL TG+GKT+IA +L++ I +       +   K++  FL  
Sbjct: 169 PREYQIELFEKAKKKNTIVVLNTGSGKTLIAGLLLRHILEKEIEDRAAGKLKRIAFFLVD 228

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
            V LV QQ+ V+  + +  V  + G    + W  + W ++  +N V+V T  IL   L  
Sbjct: 229 KVSLVFQQHAVLDCNLEHPVGRFCGDMVDEMWSREFWAQQFEENMVIVCTAAILQKCLTH 288

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK---SDNKPKVFGMTASPVVRKGVSS 218
           +++ ++ +  +V DE HH   NHPY +I+K+FY K    + +P++ GMTASP     V +
Sbjct: 289 SYIRMNQINLLVFDEAHHTKKNHPYARIIKDFYIKVPAKEMRPRILGMTASP-----VDA 343

Query: 219 AMDCEGQISELESTLDSQVFTIEDK-----------TEMEVF---VPSAKESCRFYDQSK 264
             D +   ++LE  L S++ T+ ++           TE+EV    +P   E+  +   S 
Sbjct: 344 QTDVKIATAQLECLLHSEIATVSEESLYSNSTARNITEIEVHYSSLPVPYETKLYQKVSA 403

Query: 265 FCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDEL 324
             G +     E+S++K  A+ S L     + +                     L+  DE 
Sbjct: 404 LVGCNPHFSKELSFAK--AATSSLGPWAADRFWQ-------------------LFLTDET 442

Query: 325 GLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL--HVIGSALPLADKIFLDF 382
            L  A +   +    +    +E    ++        L +V+  H   SA P  D++ +  
Sbjct: 443 ILRLA-QRTDMTYSGLKSNDKETAAVQK--------LRDVIQGHEFNSATPTLDQLSIKV 493

Query: 383 GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLT 441
                          +L E L+L  + G   +  CI+FVE R+ A  + + F ++   L 
Sbjct: 494 --------------LRLWEELKLRFTNGPGYR--CIVFVEMRLTAVLLADLFKQEGIKLP 537

Query: 442 HLTVAYLTGS--TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
           +L+ A L GS   T +  ++ K Q   +  FR  +VN LFAT V EEG+ +P+C+ V+RF
Sbjct: 538 YLSPAMLVGSQAATGLANMSFKQQVLTIHKFRQAEVNCLFATQVAEEGLDIPDCNLVMRF 597

Query: 500 DLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD--TALSRDPE 557
           DL K+V  YIQS+GRAR+ +S+++  +E GN +Q   +      +  +     AL  D +
Sbjct: 598 DLYKSVIQYIQSKGRARRQDSEYLSFIEGGNGRQARVVLQATYDQNVLRRFCNALPEDKK 657

Query: 558 ACFLKACTYV-----KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYK 612
                  + V       K+Y+++STGA +T  SS+ ++  +   L         P +   
Sbjct: 658 IMGFDISSSVLKGDLHYKTYLIKSTGAMLTWTSSLEVLANFASSLRQFNDEVLAPEYVVI 717

Query: 613 SAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
           +  + +  E+ LP+ +P   + G    N   ++     E C++L +   ++ +L P
Sbjct: 718 NQGQNFIAEVQLPAKSPIMHMTGFPHSNMKAARCSAAFEMCKELIKKKYIDHNLHP 773



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 119/325 (36%), Gaps = 82/325 (25%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +PI  V   +  P+++ R++S+M+A        C     +I   L LEA+T         
Sbjct: 1065 LPIDTVVMAFAFPALIHRIDSVMIALDA-----CKLLELNIRPDLALEAVTKDSDNSDEH 1119

Query: 1068 -----TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
                         + ERLE LGD  LK A +  +F   P  +E      R   +CN  L 
Sbjct: 1120 DKEKINFQSGMGKNYERLEFLGDCFLKMATTIAIFTENPDSNEFGYHVDRMLLICNQNLF 1179

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
                DR L  Y+R  +FD R W   G                             +++ G
Sbjct: 1180 NKAVDRNLPEYVRSKSFDRRSWYPSG----------------------------LRLIRG 1211

Query: 1183 KPCDMGHRW-MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITR 1241
            K   +  R  +  K++AD  EALIGA Y+     +          D D+ +  V   +  
Sbjct: 1212 KEGSVNLRHALADKSVADVCEALIGAAYLTYADSS----------DFDMAIRAVTAVVKS 1261

Query: 1242 AS---------LRSYVPRINEIKD-----------IESKIGYEFTVKFLLQEAITHASVQ 1281
             +           +Y P   +  D           I+ K+GYEF    LL+ A  H S  
Sbjct: 1262 KNHLMTSWGDYYAAYTPPAWQFADPTPMQKELARQIKDKLGYEFKSPALLRSAFKHPSYP 1321

Query: 1282 EFYCYQNL--YKHLQHCSTLLLSQI 1304
                Y+NL  Y+ L+     LL  +
Sbjct: 1322 R--AYENLPDYQRLEFLGDALLDMV 1344


>gi|80979131|gb|ABB54768.1| Dicer-2 [Drosophila santomea]
          Length = 1719

 Score =  217 bits (553), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 191/675 (28%), Positives = 317/675 (46%), Gaps = 66/675 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPT 102
           PR YQL++ +   + N I  L TG+GKT +A++ +K  +Q +     NG K+  +F+  T
Sbjct: 1   PRSYQLRLVDHLTKHNGIVYLPTGSGKTFVALLTLKRFSQDMDKRLENGGKR-ALFMCNT 59

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V L  QQ   ++ HT+  V  Y G +GVD W    W  EI  + VLV T Q+ LD   ++
Sbjct: 60  VELARQQMVAVQRHTNLTVGFYVGEQGVDXWTRGQWSDEIQDHQVLVGTAQVFLDLFTQS 119

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASPVVRKGVSSAM 220
            ++L  V  +++DECHH TG+HPY + M+ F     NK  P+V G++   V+ KG +   
Sbjct: 120 HMTLSSVSVVIMDECHHGTGHHPYHEFMRLFLCAEKNKALPRVVGLSG--VLIKG-NEIK 176

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQSK------FCGSDLK 271
               ++ ELE T    + T+ D  EME   ++    KE    Y   +             
Sbjct: 177 QVVKKLKELEITYRGNIITVSDTEEMENVMLYSTKPKEYLITYPSQERVFLVTQSIQSQI 236

Query: 272 GKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330
            +   +    D  +  ++ S+ L   +D   K  ++++  +D+    L+ L E G+  A 
Sbjct: 237 QQFFATLDLMDIGVQPVRRSKSLQSQRD-PQKKSSIKQLFNDF----LFQLQEYGIYAAS 291

Query: 331 EA-VKICLEKVLK-AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY-S 387
            A + + +E  LK  Q E    +          E++ H++   L        D      +
Sbjct: 292 IAIISLIVEFDLKRRQAETLSLKLMHRTAMSLCEKIRHLLVQKLRDMTDEDDDPDDKVNT 351

Query: 388 KAVDLGYISTKLHELLQLFLSFGKST-------QVLCIIFVERIIAAKVVE----RFVKK 436
           + V L + + K    +Q FL + K+T        + C++FVER    K +      F+  
Sbjct: 352 EEVILSFSTPK----VQRFLQYLKTTFANKDPKDICCLVFVERRYTCKCIYGLLLNFIDS 407

Query: 437 VPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
            P L + LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V 
Sbjct: 408 TPELRNVLTPQFMVGRNSISQDFESVLDRKYQKSAIQQFREGNANLMICSSVLEEGIDVQ 467

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM---LERGNLKQRNKLFDIIRSERS-- 546
            C+YV+  D  KT + Y+Q++GRAR +N+ F+L    L+RG + Q+   +    +E +  
Sbjct: 468 ACNYVLILDPLKTFNMYVQTKGRARSNNANFVLFSSELDRGKISQQIAQYRTAHAEIAEY 527

Query: 547 VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
           + D  L R +PE   +K       + +I E  GA +   S++ L+HRYC+ +P+D +   
Sbjct: 528 LKDRVLERTEPEMYXVKQXFQDVIQPFINEH-GAVLLPSSALILLHRYCQSMPTDAFGFV 586

Query: 606 KP-----------IFKYKSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEAC 653
            P           I     A       + LP N+  + TI      +   +K     +AC
Sbjct: 587 IPXXNSLQEDQRKILFGDCARSKEVVSIQLPLNSKLKDTIYSDPMDSVKAAKVSAAFKAC 646

Query: 654 EKLHQVGALNDHLLP 668
           + L+Q+G LN+  LP
Sbjct: 647 KLLYQLGELNERFLP 661



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 109/280 (38%), Gaps = 54/280 (19%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T+    + + MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1191 FLAAITSSSTADVYDMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNL 1250

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL--------RPVPCECGVDTLEVPLDGKFF 1173
                +D  +   I    F PR    P  +SL        R  P   G+      L     
Sbjct: 1251 LYCLSDTDIPKXISTILFTPRYTWLPPSISLPHNVLALWRENPXLAGMVGPH-NLRDLAL 1309

Query: 1174 TQDTKVVVGKPCDMGHR------------------------------WMGSKTIADCAEA 1203
             ++  +V G   D+ +                                +  K IAD  EA
Sbjct: 1310 GEEESMVSGHCSDINYNSFVEGCRANAQTHHAGADFSTEVNFCVGLVTIPDKVIADTLEA 1369

Query: 1204 LIGAYYVGGGLIAALYMMKWLGI-DADLE---VSLVDDCITRASLRSYVPRINEI----- 1254
            L+G      GL  A  M+++  I  AD+      L+D  +  + +R+ V    EI     
Sbjct: 1370 LLGVIVKNYGLQHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANV-NTTEIDGFLI 1428

Query: 1255 --KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
                +E+ +GY F  +  L +A+TH S        CYQ L
Sbjct: 1429 NHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQEL 1468


>gi|158706455|sp|Q2H0G2.2|DCL1_CHAGB RecName: Full=Dicer-like protein 1; Includes: RecName:
           Full=Endoribonuclease DCL1; Includes: RecName:
           Full=ATP-dependent helicase DCL1
          Length = 1607

 Score =  217 bits (552), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 221/785 (28%), Positives = 356/785 (45%), Gaps = 80/785 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL----IIFLAP 101
           PR YQL++FE AK +NTIAVL+TG+GKT+IA +L++   Q    +  K+L      FL  
Sbjct: 135 PRDYQLELFERAKTQNTIAVLDTGSGKTLIAALLLRWTIQNELEDRSKRLPKRIAFFLVD 194

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
            V LV QQ+ V+  + D+ +E++ G   V++     W K  ++N  +V T +IL   L  
Sbjct: 195 KVALVFQQHAVLACNLDYPLEKFCG-DMVEDVTQDFWHKTFDENMAIVCTAEILYQCLTH 253

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVF----GMTASPVVRKGVS 217
           +++ +D V  +V DE HH   NHPY +I+K+FY +  +  K       MTASPV      
Sbjct: 254 SYIRMDQVNLLVFDEAHHTKKNHPYARIIKDFYAEVKDLNKRLRISRAMTASPV-----D 308

Query: 218 SAMDCE-GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276
           + +D +  +  ELE  L SQ+ T+ D T +                     S  K K EV
Sbjct: 309 AQIDPKIARSPELEGLLHSQIATVADPTALH-------------------NSSTKLKREV 349

Query: 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA--YEAVK 334
           +  ++   L + +       KD+  +H+  +K      A       ELG  CA  Y  + 
Sbjct: 350 T-VEYGKCLPEFETGLNRALKDLVGEHRLFQKPF----AFTATAASELGPWCADRYWQLF 404

Query: 335 ICLEKVLK--AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDL 392
              E+V+K  A+ E EI R+S+     + +E+   +      A ++     F  S + DL
Sbjct: 405 FRGEEVVKLEAKTEREILRKSA-----YSQEIAAQVNKVRE-AHRLVGQHEF-ASPSSDL 457

Query: 393 GYISTKLHELLQLFLS--FGKSTQVLCIIFV-ERIIAAKVVERFVKKVPFLTHLTVAYLT 449
             +S+K+  LL++      G   +  CI+FV +R +A+ + +   +    +  L    L 
Sbjct: 458 --LSSKVVILLRILRGEFRGVDHKRRCIVFVRQRNVASLLTDLLQQPEMRIPGLEPGILV 515

Query: 450 GS---TTSVDALTPKVQKEVLE--SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
           G      S D      + +VL    F+ G++N +FAT V EEG+ +P+C+ +IR+DL  T
Sbjct: 516 GGGRPEASYDNAKVTYRDQVLTIIKFKKGELNCIFATSVAEEGLDIPDCNVIIRYDLNNT 575

Query: 505 VSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD--TALSRDPEAC--- 559
           +  YIQSRGRARQ  S +I M+E  N +   K+     SE ++     AL  D +     
Sbjct: 576 LIQYIQSRGRARQEGSIYIHMVESENEEHVKKVCQNQESEDALRKFCEALPADRKLTGNN 635

Query: 560 -----FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA 614
                FL+       + Y V  TGA +    S+  +  +   LP          +   S 
Sbjct: 636 FDMEYFLRKEK--DQRQYTVPETGARLNYKQSLICLAAFVASLPHPPEVNLTAGYLVLSV 693

Query: 615 EEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPS 674
              Y+CE+TLP ++P ++  G    +K ++K     E C  L +   L+ HL P+  +  
Sbjct: 694 PGGYQCEVTLPESSPIRSATGKVYASKAVAKCSAAYEMCLMLIKGKYLDQHLRPTFTK-- 751

Query: 675 ENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIY 734
              L + +N  L  A ++K+KE +       L    GE     L A     A       +
Sbjct: 752 --QLPAMRNARL--AVSSKKKEQYKMRIKPELWSVLGEPTE--LFAMALTLADPTALARH 805

Query: 735 SGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGL 794
           S  +LL+  +    + +F L       +    V   G+V LD +Q+          F  +
Sbjct: 806 SSPLLLLTRQPIPQIASFPLYFGKNRSSAVHCVPVPGRVELDDNQIQGLVAVTLAIFKDI 865

Query: 795 FGKLF 799
           F K +
Sbjct: 866 FSKEY 870



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 117/520 (22%), Positives = 185/520 (35%), Gaps = 164/520 (31%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P+ +V   Y  P++M R++S ++A +      C   N ++   L LEA T         
Sbjct: 1041 LPVDLVAMAYNFPAIMHRIDSNLVALEA-----CKMLNLNVRPDLALEAFTKDSDNSGEH 1095

Query: 1068 -----TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
                 +       + ERLE LGD  LK A +  +F   P K E +    R   +CN  L 
Sbjct: 1096 DAEQISFQSGMGNNYERLEFLGDCFLKMATTISIFTLIPDKAEFEYHVERMLLICNRNLF 1155

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
                + KL+ +IR  AFD R W   G L+L+                            G
Sbjct: 1156 NNALEVKLEEHIRSMAFDRRSWYPEG-LTLKK---------------------------G 1187

Query: 1183 KPCDMGHRW-MGSKTIADCAEALIGAYYVGG------GLIAALYMMKWLGIDADLEVSLV 1235
            K  D+  +  +  KTIAD  EALIGA Y+            A+  +  +  D +  ++  
Sbjct: 1188 KRKDLTRQHVLADKTIADVCEALIGAAYLTAQEQTPPNFDLAIRAVTVMVKDKNHTMTSY 1247

Query: 1236 DDCITRASLRSY--VP----RINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY----C 1285
             D     S  ++   P    +++     E+++GY FT   LL+ A  H +    Y     
Sbjct: 1248 SDYYAAYSPPAWQTAPCNSTQLDMAARFEARMGYAFTHPRLLRSAFQHPTYPSVYEKLPS 1307

Query: 1286 YQNL--------------------------------------------------YKHLQH 1295
            YQ L                                                  ++ + +
Sbjct: 1308 YQRLEFLGDALLDMASVEFLFHRFPGADPQWLTEHKMAMVSNQFLGCLAVYLGFHRAISY 1367

Query: 1296 CSTLLLSQITEYVKSF----------------------PKPGETTDSGPSM-------KA 1326
            C++ +  +ITEYV                         P PG+      +        + 
Sbjct: 1368 CASAIQKEITEYVTEIEDALQSARDDASKTPCNRHATTPSPGDLPAESFARDFWVRCSRP 1427

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGY 1386
            PK L D++E+ VGAV +D++ +   V   F   + P             E + L D+   
Sbjct: 1428 PKCLPDVVEAYVGAVFVDSRYDFARVRAFFADHVRPFF-----------EDMRLYDAFAN 1476

Query: 1387 FVKENCT-----LKGEMVHAELRLQLKD---VLLVGEGQE 1418
              K   T     ++G M  AE RL +KD   V+  G G E
Sbjct: 1477 --KHPVTFLAGIMQGRMRCAEWRLLVKDLPPVVGAGAGTE 1514


>gi|157167186|ref|XP_001652212.1| dicer-1 [Aedes aegypti]
 gi|108877338|gb|EAT41563.1| AAEL006794-PA [Aedes aegypti]
          Length = 1658

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 183/659 (27%), Positives = 318/659 (48%), Gaps = 50/659 (7%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFL 99
           +FIPR YQ  +  +  ++NTI  L TGAGKT IA+M+IK++ + +    + G K+   F+
Sbjct: 10  DFIPRDYQRTMKTICMQKNTIIYLPTGAGKTHIALMVIKEMGKDLDKPLTEGGKR-TFFV 68

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
             TV L  QQ + +  +  ++   Y   + VD W    W +E  K  V+V T QILLD L
Sbjct: 69  VNTVALAKQQAEFLSHNLTYDTSIYTSDRNVDAWKQDKWLEEFAKYQVIVCTCQILLDVL 128

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--KSDNKPKVFGMTASPVVRKGVS 217
           +  +LS+  +  ++ DECHH  G HP   IM++F    KSD+ P+V G++   ++ K + 
Sbjct: 129 KHGYLSVKHINLLIFDECHHGVGEHPMHGIMEQFLRVPKSDH-PRVIGLSGM-LLYKQIK 186

Query: 218 SAMDCEGQISELESTLDSQVFTI---EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
           S      ++  LE+T ++ + T+   +  TE+  F     E    Y   +   S +   +
Sbjct: 187 SVALVSPELERLENTFNATIATVGSYDAFTEVCKFSTDPNELLVSYSTLRL--SPVMADI 244

Query: 275 EVSWSKFDASLSKLQGSQ-LNCYKD-MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
             + + F  ++ +    + LN  K  + D+ K L K++     +++Y L + GL     A
Sbjct: 245 VNNINAFSQTIEEFHLPKYLNQNKALLKDRPKPL-KEIRKLFTELIYQLGDTGLFGGSIA 303

Query: 333 V--KICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV 390
           +   I   ++ K Q +  + R +   C  F E + H I   +          G D    +
Sbjct: 304 LLGLIVQFELDKRQSDSSMLRLALRSCITFCESLRHQIEKLMS---------GLDMKTKL 354

Query: 391 DLGYISTKLHEL---LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH----L 443
              + S K+ +L   L+      +  +   +IFV+R  +AKV+   +K     T     +
Sbjct: 355 T-KFSSLKVRQLIDQLEKLYEENRDKKAKTLIFVQRRFSAKVLYHLLKIYFAETEDANLI 413

Query: 444 TVAYLTGSTTSV-----DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
              ++ G+  S+       L+ K  + VLE F+  + N++  T+V+EEG+ +  C+ V++
Sbjct: 414 VPDFMVGNNGSMPESIEQILSAKKDRRVLERFKKNETNVIVTTNVLEEGIDLQMCNTVVK 473

Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILMLERGN---LKQRNKLFDIIRSE--RSVTDTALS 553
           +D P+T +SY QS+GRAR  NSQ+++ML+  N     ++ +L+  I  E  R +    ++
Sbjct: 474 YDHPQTFASYQQSKGRARMKNSQYMVMLDNENRHIFLEKYRLYKSIEEELRRCLIGKTIN 533

Query: 554 R-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK-- 610
           R DP    +    Y +       + GA +   S++ L++RYC  +P D +      ++  
Sbjct: 534 RPDPLDADVHKELYNEIIPPFFTAKGAKLDALSAIQLLNRYCMGMPRDAFTNTNVTWERI 593

Query: 611 -YKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
             K      E  L L S    + I G   RN  L+K+     AC KL++   LN+HL+P
Sbjct: 594 DLKDGRIIVEVLLPLQSTVR-EKISGNPMRNIKLAKRSAAFNACRKLYENKELNEHLIP 651



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 119/279 (42%), Gaps = 44/279 (15%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
             A +L +    ++ N ++    I++ALTT    + F +ER ELLGD+ LK+++S +L   
Sbjct: 1153 FAIKLLQLTPANTVNVNLQQKNIIKALTTKSSSDVFDLERYELLGDAFLKFSISLYLVKY 1212

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPCE 1158
            + + HEG L+A +   V N  L        L G ++   FDP+  W  P    L  VP  
Sbjct: 1213 HKEWHEGFLTAVKGQIVSNRNLVYCAIKYGLPGMLKIHKFDPKNDWQPP----LATVPKN 1268

Query: 1159 CGVDTLEVPLDGKFFTQ--------DTKVVVGKPCD---------------------MGH 1189
                   V    +   +         T VV  K  D                     +  
Sbjct: 1269 IKRTMQSVNHSARVLYRLTLTEEEIKTGVVTAKNSDDFIAQLELHGNMPDPSPMANYLSQ 1328

Query: 1190 RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLE--VSLVDDCITRASLRSY 1247
            + MG KT AD  EAL+G      G+  +  ++   GI       + L+ D I    L+++
Sbjct: 1329 QTMGDKTPADAMEALLGVCVQSVGIERSFKLLPHFGILPKTHNVLKLLADKIENQRLKTH 1388

Query: 1248 VPRINEI-------KDIESKIGYEFTVKFLLQEAITHAS 1279
            +  I E+       + IES +GY+F  +  L +A+THAS
Sbjct: 1389 ID-IREVDAFLKNYRRIESILGYKFKDRTYLLQALTHAS 1426



 Score = 43.5 bits (101), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 26/163 (15%)

Query: 921  YSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV 980
            Y +  +  + + ESPF    + +  ++ NYFS+ Y + ++ P Q L+ +K   +  N L 
Sbjct: 878  YVVTMVHEHLTPESPF---PNPEYGSYANYFSQAYHLAVVKPDQFLIEVKGITSYLNRL- 933

Query: 981  NFNDG-GGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLM 1039
              N G    GK ++S    K  + +  + PEL      P        LLPS + RL  L+
Sbjct: 934  --NPGVEDDGKSTRS----KHWRFNEILIPELCHNYQFPADYWLKATLLPSALHRLHYLL 987

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLEL 1082
            LA  +R +               L     +GC E+ ++E +++
Sbjct: 988  LAENIRVD---------------LATGANVGCLENHTIEDVDV 1015


>gi|57236096|gb|AAW48725.1| dicer-2 [Aedes aegypti]
          Length = 1658

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 183/659 (27%), Positives = 318/659 (48%), Gaps = 50/659 (7%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFL 99
           +FIPR YQ  +  +  ++NTI  L TGAGKT IA+M+IK++ + +    + G K+   F+
Sbjct: 10  DFIPRDYQRTMKTICMQKNTIIYLPTGAGKTHIALMVIKEMGKDLDKPLTEGGKR-TFFV 68

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
             TV L  QQ + +  +  ++   Y   + VD W    W +E  K  V+V T QILLD L
Sbjct: 69  VNTVALAKQQAEFLSHNLTYDTSIYTSDRNVDAWKQDKWLEEFAKYQVIVCTCQILLDVL 128

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--KSDNKPKVFGMTASPVVRKGVS 217
           +  +LS+  +  ++ DECHH  G HP   IM++F    KSD+ P+V G++   ++ K + 
Sbjct: 129 KHGYLSVKHINLLIFDECHHGVGEHPMHGIMEQFLRVPKSDH-PRVIGLSGM-LLYKQIK 186

Query: 218 SAMDCEGQISELESTLDSQVFTI---EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
           S      ++  LE+T ++ + T+   +  TE+  F     E    Y   +   S +   +
Sbjct: 187 SVALVSPELERLENTFNATIATVGSYDAFTEVCKFSTDPNELLVSYSTLRL--SPVMADI 244

Query: 275 EVSWSKFDASLSKLQGSQ-LNCYKD-MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
             + + F  ++ +    + LN  K  + D+ K L K++     +++Y L + GL     A
Sbjct: 245 VNNINAFSQTIEEFHLPKYLNQNKALLKDRPKPL-KEIRKLFTELIYQLGDTGLFGGSIA 303

Query: 333 V--KICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV 390
           +   I   ++ K Q +  + R +   C  F E + H I   +          G D    +
Sbjct: 304 LLGLIVQFELDKRQSDSSMLRLALRSCITFCESLRHQIEKLMS---------GLDMKTKL 354

Query: 391 DLGYISTKLHEL---LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH----L 443
              + S K+ +L   L+      +  +   +IFV+R  +AKV+   +K     T     +
Sbjct: 355 T-KFSSLKVRQLIDQLEKLYEENRDKKAKTLIFVQRRFSAKVLYHLLKIYFAETEDANLI 413

Query: 444 TVAYLTGSTTSV-----DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
              ++ G+  S+       L+ K  + VLE F+  + N++  T+V+EEG+ +  C+ V++
Sbjct: 414 VPDFMVGNNGSMPESIEQILSAKKDRRVLERFKKNETNVIVTTNVLEEGIDLQMCNTVVK 473

Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILMLERGN---LKQRNKLFDIIRSE--RSVTDTALS 553
           +D P+T +SY QS+GRAR  NSQ+++ML+  N     ++ +L+  I  E  R +    ++
Sbjct: 474 YDHPQTFASYQQSKGRARMKNSQYMVMLDNENRHIFLEKYRLYKSIEEELRRCLIGKTIN 533

Query: 554 R-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK-- 610
           R DP    +    Y +       + GA +   S++ L++RYC  +P D +      ++  
Sbjct: 534 RPDPLDADVHKELYNEIIPPFFTAKGAKLDALSAIQLLNRYCMGMPRDAFTNTNVTWERI 593

Query: 611 -YKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
             K      E  L L S    + I G   RN  L+K+     AC KL++   LN+HL+P
Sbjct: 594 DLKDGRIIVEVLLPLQSTVR-EKISGNPMRNIKLAKRSAAFNACRKLYENKELNEHLIP 651



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 118/279 (42%), Gaps = 44/279 (15%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
             A +L +    ++ N ++    I++ALTT    + F +ER ELLGD+ LK+++S +L   
Sbjct: 1153 FAIKLLQLTPANTVNVNLQQKNIIKALTTKSSSDVFDLERYELLGDAFLKFSISLYLVKY 1212

Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPCE 1158
            + + HEG L+A +   V N  L        L G ++   FDP+  W  P    L  VP  
Sbjct: 1213 HKEWHEGFLTAVKGQIVSNRNLVYCAIKYGLPGMLKIHKFDPKNDWQPP----LATVPKN 1268

Query: 1159 CGVDTLEVPLDGKFFTQ--------DTKVVVGKPCD---------------------MGH 1189
                   V    +   +         T VV  K  D                     +  
Sbjct: 1269 IKRTMQSVNHSARVLYRLTLTEEEIKTGVVTAKNSDDFIAQLELHGNMPDPSPMANYLSQ 1328

Query: 1190 RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLE--VSLVDDCITRASLRSY 1247
            + MG KT AD  EAL+G      G+  +  ++   GI       + L+ D I    L+++
Sbjct: 1329 QTMGDKTPADAMEALLGVCVQSVGIERSFKLLPHFGILPKTHNVLRLLADKIENQRLKTH 1388

Query: 1248 VPRINEI-------KDIESKIGYEFTVKFLLQEAITHAS 1279
            +  I E+       + IE  +GY+F  +  L +A+THAS
Sbjct: 1389 ID-IREVDAFLKNYRRIEGILGYKFKDRTYLLQALTHAS 1426



 Score = 43.5 bits (101), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 26/163 (15%)

Query: 921  YSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV 980
            Y +  +  + + ESPF    + +  ++ NYFS+ Y + ++ P Q L+ +K   +  N L 
Sbjct: 878  YVVTMVHEHLTPESPF---PNPEYGSYANYFSQAYHLAVVKPDQFLIEVKGITSYLNRL- 933

Query: 981  NFNDG-GGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLM 1039
              N G    GK ++S    K  + +  + PEL      P        LLPS + RL  L+
Sbjct: 934  --NPGVEDDGKSTRS----KHWRFNEILIPELCHNYQFPADYWLKATLLPSALHRLHYLL 987

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLEL 1082
            LA  +R +               L     +GC E+ ++E +++
Sbjct: 988  LAENIRVD---------------LATGANVGCLENHTIEDVDV 1015


>gi|195380844|ref|XP_002049171.1| GJ20897 [Drosophila virilis]
 gi|194143968|gb|EDW60364.1| GJ20897 [Drosophila virilis]
          Length = 1722

 Score =  216 bits (550), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 258/1085 (23%), Positives = 457/1085 (42%), Gaps = 159/1085 (14%)

Query: 47   RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAPT 102
            R YQL++ E   RRN I  L TG+GKT +A++ +K    ++ ++I+  G + L  F+  T
Sbjct: 9    RGYQLRLVEYITRRNGIIYLPTGSGKTYVAILALKRFSHNMDRSIEEGGQRAL--FICNT 66

Query: 103  VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
            V L  QQ   ++  ++F+V  Y G +G D W+   W  EI  N VLV T Q++LD   + 
Sbjct: 67   VELARQQAVYVKKFSNFKVGFYVGEQGTDNWNRSKWSDEIRDNQVLVGTAQVILDLFLQK 126

Query: 163  FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASPVVRKGVSSAM 220
             + L  V   +IDECHH TG+HPY + M+ F  +S+    P+V G+T   V+ KG +   
Sbjct: 127  HMELKSVSIAIIDECHHGTGSHPYHEFMRLFQMQSETSSLPRVVGLTG--VLIKG-NEIK 183

Query: 221  DCEGQISELESTLDSQVFTIEDKTEME-VFVPSAK-ESCRFYDQSKFCGSDLKGKLEVSW 278
                ++ ELE+T    + T+ D  EME V + S K   C    +S     ++   +  + 
Sbjct: 184  QLGKKLKELETTFRGNIVTVSDMKEMENVILHSTKPRECLITYKSVVQRFEVIDNIRCNI 243

Query: 279  SKF-------DASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYE 331
              F       D     ++ S+   ++   +K   ++  L+D+    L+ L+  G+     
Sbjct: 244  ESFYRTLDLVDIGHQPVRMSRGMRFQREPNKKNAIKLVLNDF----LFQLESYGVYAGSI 299

Query: 332  A-VKICLE-KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALP--LADKIFLDFGFDYS 387
            A V + +E ++ + Q E    R          E + H + + L   L D+   D   + S
Sbjct: 300  AIVSVLVEFEIKRRQAETLSMRNMYRAVITLCESIRHALVAKLRDMLDDEEMPDDELN-S 358

Query: 388  KAVDLGYISTKLHELLQLF---LSFGKSTQVLCIIFVERIIAAKVVE----RFVKKVPFL 440
            + V + + + K+   L       +  +   + C++FVER    K +      F+   P L
Sbjct: 359  EEVIMNFSTPKVQSFLHYLKKAFANKEPKDICCLVFVERRYTCKCIYGLLLNFIAATPEL 418

Query: 441  TH-LTVAYLTGSTTSV----DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSY 495
             + L   ++ G  +        L  + QK  ++ FR G+ N++  + V+EEG+ V  C+Y
Sbjct: 419  RNSLFPQFMVGRNSIFLDFESILERRWQKSAIQQFRDGEANMMICSSVLEEGIDVQACNY 478

Query: 496  VIRFDLPKTVSSYIQSRGRARQHNSQFILM---LERGNLKQRNKLFDIIRSE--RSVTDT 550
            VI  D  KT + Y+Q++GRAR  +S FIL    LE+  + ++   +    +E    + D 
Sbjct: 479  VIILDPIKTFNMYVQTKGRARSKDSSFILFSSELEQQKISEQIHQYRKAHAEIGEYLKDR 538

Query: 551  ALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIF 609
             L R DP+   +      + + + V   GA +   S++ L+HRYC+ +PSD +    P F
Sbjct: 539  VLERTDPQMDEMNEHFQDEIQPF-VNKNGAVLLASSALALLHRYCQQMPSDAFGIVLPWF 597

Query: 610  KYKSAEEA----------YECELTLPSNAPFQTIV----GPTSRNKNLSKQLVCLEACEK 655
            K    EE           +   +TLP N+  +  +     P  R   +S      +AC K
Sbjct: 598  KLLEPEEVKKFTSDWQRKHIVSITLPLNSTLREAIYSDPMPCVRWAKIS---AAFKACIK 654

Query: 656  LHQVGALNDHLLPSVEEPSENNLISKKNESLPGAG---TTKRKELHGTTPIRALSGRWGE 712
            LH +G LN+  LP+        + +   +     G   T KR++     P++     +  
Sbjct: 655  LHALGELNERFLPTTVNERVAEIANFHFDHWKKYGDDVTIKRRD---RDPVKTNMKTYAT 711

Query: 713  KCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVK-------- 764
            KC       + N A   V E+   + +++E++ + +  ++   +Y   +T +        
Sbjct: 712  KC-----PSELNDAMPRVGEVCYAYEIILEAQYERN--DYSRHIYDSLQTRRNYALLLRK 764

Query: 765  -----ATV---SSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRET 816
                 AT+   S  G++H+   +       ++           V           + R+ 
Sbjct: 765  RLPRLATMPLFSHQGEMHVHVAEQPLELTIEKQQQLEQLQHFHV----------MIFRDL 814

Query: 817  NSLWSPSYM---------YLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGA 867
              +W P +M         YL++PL      G     I+W    P     + + +      
Sbjct: 815  LRIWQPFFMLDRCGGEHTYLVVPLAATPAVG-----IDW----PLVEQFQSLPKAQPFSL 865

Query: 868  AQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIV 927
            AQ           +  P K   +   V+     + D K    M+V  +HT       ++ 
Sbjct: 866  AQRK---------QMPPPKPEDYEGKVVTQWYANYDDKR---MLVTKVHT-------DLT 906

Query: 928  NNSSAESPFDGNTDDDSKTFVNYFSEKYGIVL---IHPGQPLLRLKQSHNPHNLLVNFND 984
              S  E           K++  +   KY   +   +H    L+ +++  +  N  V    
Sbjct: 907  PMSMMEE------KQQDKSYYQFTMAKYSNYIGDVVHKQHFLIEVRELTDQLNFYVK--- 957

Query: 985  GGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQL 1044
                 + +KS   +K  +  V + PEL      P  +   L  LPS+++R+  ++ A  L
Sbjct: 958  -----QRTKSSAQSKA-RAKVMLIPELCFNFAFPGDLWVKLIFLPSILRRIYYMLHAETL 1011

Query: 1045 REEIN 1049
            R  IN
Sbjct: 1012 RVRIN 1016



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 124/310 (40%), Gaps = 54/310 (17%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T  G  + F MER ELLGD  LK + + +L   YP  +EG L+  +S  V N  L
Sbjct: 1196 FLAAITYAGSVDVFDMERFELLGDCFLKLSATLYLANKYPDWNEGILTQVKSTLVSNRNL 1255

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAP----------------------GQLSLRPVPC- 1157
                ++  +   I  + F P+  W+ P                      G  ++R + C 
Sbjct: 1256 LYCLSETDIPTRICSTLFTPKYTWLPPSLGLPQNVLALWKEKPELAALVGPHNIRNL-CI 1314

Query: 1158 ---------ECGVDTLEVPLDG---KFFTQDTKVVVGKPCD--MGHRWMGSKTIADCAEA 1203
                     +CG       +DG     +T    +      +  +G   M  K IAD  EA
Sbjct: 1315 SEEEVFGNGKCGEHVYRSFVDGCQANQYTHHAGMDFSSEINFCVGLVQMPDKLIADTLEA 1374

Query: 1204 LIGAYYVGGGLIAALYMMKWLGI-DADLE---VSLVDDCITRASLRSYVPR-------IN 1252
            L+G      GL     M+++ GI  +D+      L+D  +  A +R+ + +       IN
Sbjct: 1375 LLGVVVKNYGLQHGFRMLEYFGICKSDIGKPLTQLLDLQLGSARMRTNISQREVDGFLIN 1434

Query: 1253 EIKDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNLYKHLQHCSTLLLSQITEYVK 1309
              + +E  +GY F  +  L +A+TH S        CYQ L          L+S      K
Sbjct: 1435 H-QHLEQNLGYTFRDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEHK 1493

Query: 1310 SFPKPGETTD 1319
            +   PG+ TD
Sbjct: 1494 TRMTPGQLTD 1503



 Score = 43.9 bits (102), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 1312 PKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLEL 1371
            P  GE   S  ++  PKALGD+LE+++ AV +D + +L   W++   +  P +      +
Sbjct: 1595 PHVGEFNISH-NVDVPKALGDVLEALIAAVYLDCR-DLTTTWQVVYRLFEPELLEFSRNV 1652

Query: 1372 P--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAA 1429
            P  P+R+L E   +   F          MV  +     K + + G G   + K AK  AA
Sbjct: 1653 PLNPIRQLFEHKLAKPTFSPPIMDNNQVMVTCQFICMDKTIKVYGFGN--NGKQAKLSAA 1710

Query: 1430 SQLLKKLEVCE 1440
               L+KL  CE
Sbjct: 1711 KHALQKLAKCE 1721


>gi|121807816|sp|Q2VF18.1|DCL2_CRYPA RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease DCL-2; Includes: RecName:
           Full=ATP-dependent helicase DCL-2
 gi|77632776|gb|ABB00357.1| dicer-like protein 2 [Cryphonectria parasitica]
          Length = 1451

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 187/707 (26%), Positives = 319/707 (45%), Gaps = 111/707 (15%)

Query: 27  GHDHAVDGPSSSTNSINFIP--------RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVM 78
           GH    D P         +P        R YQL++ E + + N I  ++TG+GKT +A++
Sbjct: 36  GHLSEEDSPGGKPRPKEQLPKDIVKMDARAYQLEMLEASLKENIICAMDTGSGKTHVAIL 95

Query: 79  LIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQC 137
            IK   + +      +++ FL PTV L  QQY V++      + +   GA  VD W S  
Sbjct: 96  RIKAELEEMPEG---QVVWFLTPTVSLCAQQYAVVKAQIPSVQTKIVTGADKVDSWSSTT 152

Query: 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197
           W   +    V++ TPQ+LLDAL   F+++  +  +V DE HH   NH Y+++MKEFY +S
Sbjct: 153 WDGALLNVKVIITTPQVLLDALLHGFVNISSLALMVFDEAHHCNKNHAYSRVMKEFYWES 212

Query: 198 DNK----PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSA 253
             K    P++ G+TASPVVR  +SS       +  LESTLD+   +       E  + ++
Sbjct: 213 KTKHEPVPRILGLTASPVVRSDISS-------LKRLESTLDAVCRS--PTRHREELIANS 263

Query: 254 KESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHK-TLRKQLSD 312
           +    F             KL+   + F  SL+KL  ++ N    ++D +  +LR ++SD
Sbjct: 264 QRPALF-------SIIYNPKLQPYAAGFSESLTKLMAAR-NKLNILEDPYVVSLRAEISD 315

Query: 313 YHAKIL---------YCLD--------------ELGLICA----YEAVKICLEKVLKAQE 345
              + L         Y  D              ELG   A     EA+++ L        
Sbjct: 316 RSRRKLEKAIKEKRTYVQDTMKSFCRRSMEMAKELGAWAADWFISEAIRLFL-------- 367

Query: 346 ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDL-GYISTKLHELLQ 404
              IYRQ +    +   EV+ +         ++F D   +    +     +S K+  +++
Sbjct: 368 -AGIYRQGASSKSFRDAEVIFLA--------RVFQDANIEPPPPLTTHSGLSEKVQRIIE 418

Query: 405 LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL-------THLTVAYLTGSTTSVDA 457
           + L++ K  + +C  FV+      V+   +   P +       T +  +++ G       
Sbjct: 419 VLLNYDKDARAIC--FVKERATTVVLSHILTTHPEVSSKFRIGTMVGTSFVPGVKRDFLD 476

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
           L      + LE+FR G+ N+L AT V+EEG+ VP C+ +I FD P  + ++IQ RGRAR 
Sbjct: 477 LPETGGSQCLEAFREGRKNMLVATSVLEEGIDVPACNLIICFDKPNNLRAFIQRRGRARM 536

Query: 518 HNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYI---- 573
             S   L +E     +    ++ + ++  +      R+ E   L+A    +   Y     
Sbjct: 537 RQSHLYLFVE----DEAEADWEALEAQMKLQYEDEKREHER--LEAIENSEALDYPEELR 590

Query: 574 VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYE--------CELTLP 625
           VESTGA +T + + + +  +   L S K+   +P +  +   + Y+          + LP
Sbjct: 591 VESTGARLTINDAKSHLQHFVSTLASRKFVQTQPDYLIEKVSQGYQPGDQPLLKATVLLP 650

Query: 626 SNAPFQTIVGPTSRNKNLSKQLVCLEAC----EKLHQVGALNDHLLP 668
            + P Q +   TS    +S++  C++A     + L++ G ++DHLLP
Sbjct: 651 VSVP-QALRQVTSSRTWVSEKNACMDAAFQAYKALYEAGLVDDHLLP 696



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 126/296 (42%), Gaps = 34/296 (11%)

Query: 998  TKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHI 1057
            + KP  ++ +P E      +P+   +   L+PS++   E  ++A++L  ++    R  ++
Sbjct: 926  STKPYAYI-LPAETTTVDRIPLVYAQMGLLMPSLVCYTELYLVAAELSRKVLAPLRISNV 984

Query: 1058 PSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1117
              S+++EA+         + ER+E LGDS+LK  ++ +L  T     EG LS  +   V 
Sbjct: 985  --SMLVEAICAKSARTPENYERIEFLGDSILKTCITVNLAATKLHLPEGILSLMKDRLVS 1042

Query: 1118 NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDT 1177
            N+ L +   D +L  ++       + W                    + P       QD 
Sbjct: 1043 NARLCRAACDAELDQFLVTQQLVTKGW--------------------QPPYMSDLAKQDQ 1082

Query: 1178 KVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLE-VSLVD 1236
            +           R +  KT+AD  EALIG  +V GGL  AL  ++    ++     S V 
Sbjct: 1083 E-------PESKRILSPKTLADVVEALIGVSFVDGGLPKALECIRLFIPESQPRPFSEVR 1135

Query: 1237 DCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ---EFYCYQNL 1289
            D +  A+    +    +++ +E  I Y F  K LL EA+TH S        CY  L
Sbjct: 1136 DILFGAAEPKGMKLPADLQLLEQLIEYSFCEKALLVEAVTHPSYNVSGTVACYDRL 1191


>gi|80979133|gb|ABB54769.1| Dicer-2 [Drosophila teissieri]
          Length = 1719

 Score =  214 bits (546), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 192/675 (28%), Positives = 317/675 (46%), Gaps = 66/675 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPT 102
           PR YQL++ +   + N I  L TG+GKT +A++ +K  +Q +     NG K+  +F+  T
Sbjct: 1   PRSYQLRLVDHLTKHNGIVYLPTGSGKTFVALLTLKRFSQDMDKRLENGGKR-ALFMCNT 59

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V L  QQ   ++  T+  V  Y G +GVD+W    W  EI  + VLV T Q+ LD   + 
Sbjct: 60  VELARQQTVAVQRLTNLTVGFYVGEQGVDDWTRGQWSDEIQDHQVLVGTAQVFLDMFTQK 119

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKSDNKPKVFGMTASPVVRKGVSSAM 220
            ++L  V  +++DECHH TG+HPY + M+ F    K+ N P+V G+T   V+ KG +   
Sbjct: 120 HMTLSSVSVVIMDECHHGTGHHPYHEFMRLFLCAEKNINLPRVVGLTG--VLIKG-NEIK 176

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQSK------FCGSDLK 271
               ++ ELE T    + T+ D  EME   ++    KE    Y   +             
Sbjct: 177 QVVKKLKELEITYRGNIITVSDTEEMENVMLYSTKPKEYLITYPSQERVFMVTQSIQSQI 236

Query: 272 GKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330
            +  V+    D  +  ++ S+ L C +D   K  ++++  +D+    L+ L E G+  A 
Sbjct: 237 QQFFVTLDLMDIGVQPVRRSKSLQCQRD-PQKKSSVKQLFNDF----LFQLQEYGIYAAS 291

Query: 331 EA-VKICLEKVLK-AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY-S 387
            A + + +E  LK  Q E    +          E++ H++   L        D      +
Sbjct: 292 IAIISLIVEFDLKRRQAETLSLKLMHRTAMSLCEKIRHLLVQKLRDMTDEDDDPDDKVNT 351

Query: 388 KAVDLGYISTKLHELLQLFLSFGKST-------QVLCIIFVERIIAAKVVE----RFVKK 436
           + V L + + K    +Q FL + K+T        + C++FVER    K +      F+  
Sbjct: 352 EEVILSFSTPK----VQRFLQYLKTTFANKDPKDICCLVFVERRYTCKCIYGLLLNFIDS 407

Query: 437 VPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
            P L + LT  ++ G +T S D    +  K QK  ++ FR G  NL+  + V+EEG+ V 
Sbjct: 408 TPELRNVLTPQFMVGRNTISQDFESVIERKHQKSAIQQFRDGNANLMICSSVLEEGIDVQ 467

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM---LERGNLKQRNKLFDIIRSERS-- 546
            C+YV+  D  KT + Y+Q++GRAR +N+ F+L    L+RG + Q+   +    +E +  
Sbjct: 468 ACNYVLILDPLKTFNMYVQTKGRARSNNASFVLFSSELDRGKISQQIAQYRTAHAEIAEY 527

Query: 547 VTDTALSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTP 605
           +    L R +PE   +K       + +I E  GA +   S++ L+HRYC+ +P+D +   
Sbjct: 528 LKLRVLERTEPEMYEVKQHFQDVIQPFINEH-GAVLLPSSALILLHRYCQSMPTDAFGFV 586

Query: 606 KP-----------IFKYKSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEAC 653
            P           I     A       + LP N+  + TI      N   +K     + C
Sbjct: 587 IPWINSLQEDTRKILFGDCARSKEVVSIKLPLNSKLKDTIYSDPMDNVKAAKISAAFKTC 646

Query: 654 EKLHQVGALNDHLLP 668
           + L+Q+G LN+  LP
Sbjct: 647 KLLYQLGELNERFLP 661



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 109/282 (38%), Gaps = 58/282 (20%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T+    + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1191 FLAAITSSSTADVFDMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNL 1250

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVP----------LDGK 1171
                +D  +   I    F PR    P  +SL   P        E P          L   
Sbjct: 1251 LYCLSDTDIPKKISTILFTPRYTWLPPSISL---PHNVLALWREKPELASMVGPHNLRDL 1307

Query: 1172 FFTQDTKVVVGKPCDMGHR-------------------------WMGSKTIA-----DCA 1201
               ++  +V G   D+ +                           +G  TIA     D  
Sbjct: 1308 ALGEEESLVRGYCSDINYNSFVEGCRANAQSHHAGADFSAEVNFCVGLVTIADKVIADTL 1367

Query: 1202 EALIGAYYVGGGLIAALYMMKWLGI-DADLE---VSLVDDCITRASLRSYVPRINEI--- 1254
            EAL+G      GL  A  M+++  I  AD+      L+D  +  + +R+ V    EI   
Sbjct: 1368 EALLGVIVKNYGLQHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANV-NTTEIDGF 1426

Query: 1255 ----KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
                  +E+ +GY F  +  L +A+TH S        CYQ L
Sbjct: 1427 LINHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQEL 1468


>gi|383856609|ref|XP_003703800.1| PREDICTED: endoribonuclease Dicer-like [Megachile rotundata]
          Length = 1441

 Score =  214 bits (546), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 189/615 (30%), Positives = 302/615 (49%), Gaps = 53/615 (8%)

Query: 39  TNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLI 96
           +N+ NFI R YQ+ + EVA R+NTI  L TGAGKT IAV LI++++  I+   N  KK  
Sbjct: 3   SNTDNFIARTYQVDLLEVALRQNTIVYLPTGAGKTFIAVKLIEELSADIRRPYNEGKKHT 62

Query: 97  IFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
           IF+  TV LV QQ + I   T        G   VD W  Q W +++ K  VLVMT QIL+
Sbjct: 63  IFVVNTVPLVVQQSEYIGRLTGLLCSPLSGDCNVDFWKDQEWNQQLEKYQVLVMTAQILV 122

Query: 157 DALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN-KPKVFGMTASPVVRKG 215
           DAL   ++ L  +  I+ DECH A  +HP  +IM+ F   S+N +PKV  ++AS +    
Sbjct: 123 DALSHGYIYLRNINLIIFDECHRAVNDHPMRQIMQFFERCSNNEQPKVLALSASLLNSNV 182

Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275
             S +D    I  LE T  ++V T+    +++ + P  ++    YD +    SD++ ++ 
Sbjct: 183 KLSKVD--SMIKSLEITFQAKVATVNSFEQLQNYYPVPQQVIVEYDLNVI--SDVENRVR 238

Query: 276 VSWSKFDASLSKLQGSQL--NCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
              S+    L+KL  + +  N   D   + K++ K+L      I       G+   Y A 
Sbjct: 239 AIISETCDILNKLLLNTMMKNIESDEVFRPKSVTKKLMSIMVDIQNQFSNAGI---YGAS 295

Query: 334 KICLEKVLKAQEECEIYRQSSLQCKYFLEEVL-HVIGSALPLADKI----FLDFGFDYSK 388
           K  L  ++  Q EC       L   + LE ++  V      L D++     L+  + YS 
Sbjct: 296 KSALLHLI--QLECLKKNADELNTIHVLEYLITEVTKCRKVLEDEMKGNTELEKIYKYSS 353

Query: 389 AVDLGYISTKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVP----FLTHL 443
                  + KL  LL+ F +   +  Q  CIIFV++     V+ + +K +         L
Sbjct: 354 DQ-----TRKLFSLLKEFYNKRSEGQQFCCIIFVQQRFTVNVLYQVLKNLAEHDEEYKFL 408

Query: 444 TVAYLTGSTTS-----VDAL-TPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
              ++ G + +     +++L   K  K  L  F+ G  N + ATDVI+EG+ +P C+ VI
Sbjct: 409 KPEFMVGFSNNPYKNCIESLCIAKCNKAALLRFKNGLSNCIIATDVIDEGIDIPTCTLVI 468

Query: 498 RFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK--QRNKLFDIIR---SERSVTDTAL 552
           RF+LP  V +YIQS+GRAR  +S ++L++ +G++   +R + F ++     +  V++  +
Sbjct: 469 RFNLPMDVRAYIQSKGRARFASSHYVLLVPKGDIDYLKRYEQFQMVEKYLQQLLVSENNV 528

Query: 553 SRDPEACFLKACTY-VKTKSYIVESTGA---SVTTDSSVNLIHRYCEMLPSDKY------ 602
              P    +K   Y    + Y V        +VT  S++ LI+RYC  L   K+      
Sbjct: 529 RTKPTENEIKNVLYKYNIEPYAVTDENGITYTVTEQSAIALINRYCVSLLKSKFVYLVPC 588

Query: 603 ---YTPKPIFKYKSA 614
              YT   ++K+ SA
Sbjct: 589 WILYTKDDMYKFPSA 603



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 127/265 (47%), Gaps = 42/265 (15%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            ++ ALT+    ++F +ERLE LGDS LK+ VS +L+  +P  +EG L+  +   + N  L
Sbjct: 1017 VMYALTSKMGLDAFDLERLETLGDSYLKFIVSLYLYTIFPNYNEGSLTVLKGKMIGNRNL 1076

Query: 1122 HKLGTDRKLQGYIR-DSAFDPRRWVAPGQLSLRPVPCEC--------GVDTLEVPLDGKF 1172
            +  G  + + G ++ D       ++AP     R +  +          +  +++P   +F
Sbjct: 1077 YYCGIKKNIPGRMKVDDFIASSNFIAPAYTVFRQLQKQLLEKKVSPNVLYEIQIPKHEQF 1136

Query: 1173 ---FTQDTKVVV--------------GKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLI 1215
                +++T + +              G    +G + +  KT+ADC EALIG Y    G+ 
Sbjct: 1137 NGSISEETGIKIQEKVLNWETAESQTGMEHYLGIQTVPDKTVADCVEALIGVYLENLGIK 1196

Query: 1216 AALYMMKWLGI-----DAD-LEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKF 1269
             A+ ++KW  I     DA  L   + ++ +   ++  ++P  +   DIE+K+GY F  + 
Sbjct: 1197 NAITLLKWFQILPNETDAHRLLHDISENIVVDENINRFMPWAS---DIETKLGYRFENRA 1253

Query: 1270 LLQEAITHAS-----VQEFYCYQNL 1289
            LL +A TH S     V E  CYQ L
Sbjct: 1254 LLLQAFTHPSYTANNVTE--CYQRL 1276



 Score = 47.4 bits (111), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 24/155 (15%)

Query: 905  KNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLI 960
            KN    + L I T R    +Y + +I  + +  S F     D+  ++ +Y+ EK+G+++ 
Sbjct: 756  KNSDYELALVIPTYRPSPDVYIVTQICEDLTPNSCFPT---DNFFSYAHYYKEKHGLIIN 812

Query: 961  HPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQM-------HVHMPPELLV 1013
               QP+L +K      N +          K  +   N+KK ++         H+ PEL +
Sbjct: 813  DLKQPMLEVKAISRKINYI----------KPRRMQNNSKKRKIADVYKDFKEHLVPELCI 862

Query: 1014 RVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
            R+  P        LLPS++ R+  L++A  LR  I
Sbjct: 863  RITFPALYWLKTTLLPSILHRVSQLLIAEDLRSTI 897


>gi|402073770|gb|EJT69322.1| dicer-like protein 2 [Gaeumannomyces graminis var. tritici
           R3-111a-1]
          Length = 1538

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 195/712 (27%), Positives = 331/712 (46%), Gaps = 78/712 (10%)

Query: 21  PDMGSSG-HDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVML 79
           P  GS+  HD A  GP +     +  PR+YQL++F+ +  +N I  ++TG+GKT +AV+ 
Sbjct: 49  PTTGSARLHDSA--GPGTPAPRTSMTPRVYQLELFQASMEQNIIVSMDTGSGKTQVAVLR 106

Query: 80  IKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH-TDFEVEEYYGAKGVDEWDSQC- 137
           I  I++  +++  K+ I FLAPTV L +QQ++V+R       V+   G   VD W +Q  
Sbjct: 107 I--ISELERTDADKR-IWFLAPTVTLCNQQFEVLRSQLPSIGVKILTGDDNVDSWSNQSI 163

Query: 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197
           W   + +  V+V T QIL DAL  +F++LD +  IV DE H+  GN+   ++M +FYH  
Sbjct: 164 WDAVLFETRVVVCTYQILFDALSHSFVTLDTISLIVFDEAHNCLGNNSGRRMMMQFYHPR 223

Query: 198 DNK----PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS--QVFTIEDKTEMEVFVP 251
                  P + G+TASPV+R  ++S       +  LE++LD+  +  T+  + E+   V 
Sbjct: 224 KESGLPVPHILGLTASPVMRSDITS-------MDSLEASLDAVCRGPTVH-RDELLANVN 275

Query: 252 SAKESCRFYDQSK---FCGSDLKGKLEVSWSKF----DASLSKLQGSQLNCYKDMDDK-- 302
               +   Y +      C +D   +L+ ++S+     D  +  L     +  K M +K  
Sbjct: 276 RPLMAIDAYPRPPDPMTCPTDNMRRLQDAFSQLKIAEDPYVMHLYAQGTDRSKRMLEKVF 335

Query: 303 --HKT-LRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359
             H T +R+Q+  + ++    L+E+G   A   +   +++  K++             + 
Sbjct: 336 ENHDTFIRRQIKAFISRSQTILEEMGSWAADSYMCQAIKRATKSRTRSSYLVGWLDAEQR 395

Query: 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCII 419
           +L ++L  + +  P          F+ S        + KL  LL +  S   +   + I+
Sbjct: 396 YLVKILKGVRAKPPQPPYP----AFETS--------APKLQALLTVLASHQGNP--VGIV 441

Query: 420 FVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTSVDA------LTPKVQKE---VLES 469
           FV+    A V+   +++ P +     V Y+ G++ +         L+P    +    L++
Sbjct: 442 FVKERATAAVLSSLLQEFPMINERYKVGYMVGTSRNAARKRDFYDLSPMEDGKGASALDN 501

Query: 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG 529
           FR G++NLL AT V+EEG+ VP C+ V+ FD P  + S+IQ RGRAR  +SQ  L+LE G
Sbjct: 502 FRSGRINLLVATSVLEEGIDVPVCNLVVCFDRPANLKSFIQRRGRARMRSSQLHLLLEEG 561

Query: 530 NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVES---------TGAS 580
              +R    D    E+ +         E   LK     + ++  ++          T A 
Sbjct: 562 ---ERLVAHDWEALEKEMKRRYEDEMRELDHLKQLEDEEAENTTMDGPLAPLRARDTAAE 618

Query: 581 VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSR- 639
           +T   +   +  +C ++ S  +  P P +            + LP + P +     +SR 
Sbjct: 619 ITIKDAKGHLDHFCRVIGSRMFVDPSPEYLINETSSEIHATVLLPVSLPLKLRRISSSRG 678

Query: 640 ---NKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPG 688
               KN  K    L+A + L+  G LN HLLP  EE    N   +  E  PG
Sbjct: 679 WMSQKNACKD-AALQAYKMLYDAGLLNQHLLPIREEVVAAN---RDVEGRPG 726



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 108/257 (42%), Gaps = 43/257 (16%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDS 1086
            L+PS+   +E+ M+A +L       +  F    +L++ AL+        + ER+E LGDS
Sbjct: 988  LIPSITNAMENYMVAEELLRTTPLGTLGFK-DVALVVTALSAPSSQNVTNYERIEFLGDS 1046

Query: 1087 VLKY--AVSCHLF-LTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRR 1143
            +LK   +++C    L YP   EG LS  +   V NS L +      L  +I       R 
Sbjct: 1047 ILKLCASITCAANNLEYP---EGYLSLVKDRIVSNSRLCRAAVKFGLDRFIITKQHTLRG 1103

Query: 1144 WVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEA 1203
            W                          K   Q  +           R + +KT+AD  EA
Sbjct: 1104 W--------------------------KRVLQAME---------AQRDLSTKTLADVVEA 1128

Query: 1204 LIGAYYVGGGLIAALYMMKWLGIDADLE-VSLVDDCITRASLRSYVPRINEIKDIESKIG 1262
            LIGA  + GG+  AL  +     D +   + L    + +A+ +S       ++ +E  +G
Sbjct: 1129 LIGAALIEGGMDKALRCISLFLPDEEWRSLDLGRQILYQAAPKSVKKLPVTMRPVEGLLG 1188

Query: 1263 YEFTVKFLLQEAITHAS 1279
            Y F  K LL EA+TH+S
Sbjct: 1189 YTFRNKALLVEALTHSS 1205


>gi|444841767|gb|AGE12616.1| Dicer 2 [Laodelphax striatella]
          Length = 1654

 Score =  212 bits (539), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 192/667 (28%), Positives = 324/667 (48%), Gaps = 61/667 (9%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFL 99
           F+ R YQ ++  +A + N I  L TG+GKT +A M+IK    DI + +   G  K   FL
Sbjct: 26  FVARDYQDELLPLAVQNNCIIYLPTGSGKTFLATMIIKHFSADIEKKLSEGG--KRAFFL 83

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
             TV LV QQ   I+  T FE+ +Y G  G D W    W++E++   V+VMT QILL+ L
Sbjct: 84  VNTVQLVEQQALSIQHQTTFEIGQYTGQTGCDLWSEDVWKRELDNKSVIVMTAQILLNLL 143

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS----DNKPKVFGMTASPVVRKG 215
              +L L  +  IV DECH+A  +HP   IMK F   +    D +P V G+T S      
Sbjct: 144 THYYLKLSNIRVIVFDECHNAVKDHPMRCIMKFFEGVTLVPPDQQPHVVGLTGS-----L 198

Query: 216 VSSAMD---CEGQISELESTLDSQVFTIEDKT-----------EMEVFVPSAKESCRFYD 261
           ++SA+D       I +LE+T  S++ T  +++             +V VP +  +     
Sbjct: 199 LNSAIDESRVPEYIRDLEATFQSRIITSVNESMALAIARYSADPQQVIVPFSPGNHMLSS 258

Query: 262 QSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMD-DKHKTLRKQLSDYHAKILYC 320
                   L G + +   K +  +  +   Q    + +  ++ + L K+L +    + Y 
Sbjct: 259 LCTDVSEVLDGVMRII-GKLNLKVEDVHIPQKPSSRAIQMEELQKLNKKLVNMIVDVKYQ 317

Query: 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
           ++ LG   AY   K  L  ++  + +    R + LQ         H + + L    K+F 
Sbjct: 318 MENLG---AYGGFKAALAMMILLERK---KRSAQLQVH---ANTYHFLITYLTYVRKMFT 368

Query: 381 DFGFDYSKAVDLG-YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK--KV 437
           D    Y     +  ++S K+ +L++L   F ++ + L  IFV R    K ++  ++  K+
Sbjct: 369 DVISKYEGEERIKLFVSNKVLKLVELLADFKETDRAL--IFVTRRFTCKCLQYILEDLKL 426

Query: 438 PFL-THLTVAYLTG--STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
           P + +   V Y +   + T    L  KV K VL+SF  GK N L A+DV+EEG+ V  C+
Sbjct: 427 PNVKSDFIVGYNSNPFNDTREGLLEKKVNKRVLKSFNKGKKNFLIASDVLEEGIDVQICN 486

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL--FDII--RSERSVTDT 550
            V++F  P T+ SYIQS+GRAR   S++ ++ E  N +   K+  F+ +  R +  +   
Sbjct: 487 MVVKFAPPTTMRSYIQSKGRARSRISKYYILTETSNSECYRKISKFETLEARLKYELVGK 546

Query: 551 ALSRD-PEACFLKACTY-VKTKSYI-VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKP 607
            L R  P    L    +  + K +  +   G  +   + ++LI+RYC  L  DK+ T  P
Sbjct: 547 FLDRTLPTQEELNESIFKAQMKPFFPLGPDGPKIEGSTPISLINRYCTSLDCDKFSTLSP 606

Query: 608 I-FKYKSAEEAYECE----LTLPSNAPFQTIVGPTS-RNKNLSKQLVCLEACEKLHQVGA 661
             +K +   + +E +    L LP+++P + I+   +  +  L+K+   L+AC+ L++   
Sbjct: 607 FWWKERVVTDCHEQKIIVYLQLPNSSPVRQIIKSDAFPSIELAKRSAALKACKLLYESQE 666

Query: 662 LNDHLLP 668
           L++++LP
Sbjct: 667 LDNNMLP 673



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 159/395 (40%), Gaps = 105/395 (26%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            +L+ LT     + F++ERLE LGDS LKY+VS  LF  +P+  EGQL+  +   + N  L
Sbjct: 1175 VLQVLTAASAHDIFNLERLETLGDSFLKYSVSLILFTRFPELSEGQLTMIKGKIIGNRNL 1234

Query: 1122 HKLGTDRKLQGYIRDSAFDPRR-WVAPG------------QLSLRPVPCECGVDTLEVPL 1168
               G +++L   I+   F+    WVAPG            +LS+ P        T E   
Sbjct: 1235 FYCGEEKELGSIIKTVEFNTESDWVAPGFCVDRTVQRLLRELSVNPRYLYEIELTKEERD 1294

Query: 1169 DGKFFTQDTKVVVGKPCD----------------MGHRWMGSKTIADCAEALIGAYYVGG 1212
             G+       ++  K  D                +  + + +KT++D  EAL+G      
Sbjct: 1295 SGQLSESTRDMIENKLYDSWEEDTDYANYSNAHFISQQVVSNKTVSDSVEALLGLCIKSF 1354

Query: 1213 GLIAALYMMKWLGI--------DADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYE 1264
            G+     +++WL +        DA +E  +    ++     ++   I++   +E  I Y+
Sbjct: 1355 GIEKGFEILRWLKVTDPNLIKPDAYVEKKVEPTILSMIGDINF--HIHQPDYLERLINYK 1412

Query: 1265 FTVKFLLQEAITHASVQ-------------------EFYCYQNLYKHLQHCST------- 1298
            F  +  L +A++H + Q                   +F    ++++H  + +        
Sbjct: 1413 FKQRAFLLQALSHPTYQPNNITPTYQRLEFLGDAILDFLITTHIFEHCDNLTPGELTDLR 1472

Query: 1299 ---------------------LLLS--QITEYVKSFPKPGET-----------------T 1318
                                 LLL   Q+++ ++SF +  E+                 +
Sbjct: 1473 SALVNNVTLASIAVRIGLHKFLLLRSFQLSKVIESFVERQESRQHEFTDQTLYLINEIDS 1532

Query: 1319 DSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1353
            + G  ++ PK LGD+ ES+VGA+ +D+   L   W
Sbjct: 1533 NVGECIEVPKILGDVFESLVGAIFLDSNRCLKTTW 1567


>gi|409042283|gb|EKM51767.1| hypothetical protein PHACADRAFT_150441 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 1556

 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 199/709 (28%), Positives = 317/709 (44%), Gaps = 104/709 (14%)

Query: 41  SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLA 100
           S   + R YQ ++ + + RRN +  L+TG+GKT IA++ +K   +   +    K+  FLA
Sbjct: 11  SPGIVTRGYQQELLDESLRRNIVIALDTGSGKTHIAMLRMKHEVEHTSN----KVSWFLA 66

Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVMTPQILLDAL 159
           PTV L+ QQ DVI       V    GA   D+W D+  W   ++++ ++V TPQILLDAL
Sbjct: 67  PTVALIEQQRDVIAAAIPVSVGLISGASAPDQWKDADLWLNILSQHRIVVSTPQILLDAL 126

Query: 160 RKAFLSL-DIVCFIVIDECHHATGNHPYTKIMKEFYH----------KSDNKPKVFGMTA 208
           R  +++L   +  +V DE HHA   HPY +IM+ FYH          ++  +P + G+TA
Sbjct: 127 RHGYINLGKHISLLVFDEAHHAMSKHPYNEIMRGFYHPLPPRHGCDIQAIVRPAILGLTA 186

Query: 209 SPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCG 267
           SP+      SA D      E+ES LDS + +   ++ E+  FV   +     Y+QS F G
Sbjct: 187 SPIY-----SASDIAKSFREIESNLDSVIRSSRFNREELATFVHRPEFRYILYNQSTFTG 241

Query: 268 SDLKGKLEVSWSKFD--------------ASLSKL-QGSQLN-----CYKDMDDKHKTLR 307
           +     L   ++  D              + L+KL  G Q N       K +D +     
Sbjct: 242 ALSSRYLNTLYAVVDSLDIESDPYVIALRSQLAKLPSGKQRNRVDQKLSKALDKRDTFTH 301

Query: 308 KQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHV 367
           K L D+         ELG   ++ A       +    +E +++       +   +  L  
Sbjct: 302 KGLRDFLRTATDIYAELG---SWPADWYITSIIQATNDEIDLHTGVLGSWQDHEKHYLLN 358

Query: 368 IGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQV-----LCIIFVE 422
           I S +P+     L +  ++ +A     I+ K+HELL+   S  + ++        IIFV 
Sbjct: 359 ILSRVPVET---LSYDPEHIRA----GITPKVHELLKCLRSEERRSRAEDEPFSGIIFVT 411

Query: 423 RIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTSVD---------ALTPKVQKEVLESFRG 472
           R  A   + R +  +P +T    +  L G++ S           +L  +   +VL+ FR 
Sbjct: 412 RRDAVLALARVISSLPEMTADFQIGCLLGTSASFKRHAFLDISRSLLKETATQVLKDFRT 471

Query: 473 GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK 532
           G  NL+ +T V EEG+ +  C  VIRFD P  + S+ QSRGRAR+  S F++ML   +  
Sbjct: 472 GDKNLVVSTAVAEEGIDIQACGTVIRFDPPDNMVSWAQSRGRARRRRSTFLVMLGSDSAS 531

Query: 533 QRNKLFDIIRSE--RSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLI 590
           ++  L+  +     +  TDT    DP           +   ++V  TGA +T +SS++ +
Sbjct: 532 EKIALWQEMEKTMIKLYTDTTRGNDPP----PETELEEDLEFVVPHTGAKLTLESSISHL 587

Query: 591 HRYCEMLPSDKYYTPKPIFKYKSAEE------------------AYECELTLPSNAP--F 630
           + +C +LP   +    PIF+    E                    +    TLP   P   
Sbjct: 588 YHFCAILPHSSHTVQGPIFELDPPEYDEGWHSLDPRYAPAPYGGPWGATCTLPRQVPKEV 647

Query: 631 QTIVGPTSRNKNLSKQLV-----------CLEACEKLHQVGALNDHLLP 668
           +T  G T + +  S   V              A  +L+  G LNDHLLP
Sbjct: 648 KTEDGETIKLRKFSTSRVYPTKQSARNHAAFFAYHQLYLAGLLNDHLLP 696



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 48/88 (54%)

Query: 1057 IPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1116
            IP +L+  ALT     +  S +RLE LGD+VLKY VS  L   YP  HEG L+ R+  AV
Sbjct: 1007 IPFTLLRPALTAPVATDLVSYQRLETLGDTVLKYIVSVLLHAQYPLWHEGYLARRKDHAV 1066

Query: 1117 CNSTLHKLGTDRKLQGYIRDSAFDPRRW 1144
             N+ L K      LQ +I    F  ++W
Sbjct: 1067 NNNRLAKEALRLGLQTWIIRDRFAAKKW 1094



 Score = 47.0 bits (110), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 13/128 (10%)

Query: 1192 MGSKTIADCAEALIGAYYVGGGLIAALYMMKW--LGIDADLEVSLVDDCITRASLRSYVP 1249
            + +K +AD  E+LIGA Y  GG   A   M+   LGID       V  C+ ++    ++ 
Sbjct: 1186 LSTKMLADVVESLIGAAYEHGGFDLATECMQLFHLGIDT---WETVPACVEKS--LGHIE 1240

Query: 1250 RINEIKD----IESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQI- 1304
             + E+      +E  +GY+F+ + LL EA+THAS       Q+ Y+ L+     +L  I 
Sbjct: 1241 ELGELPPALELVERMVGYKFSKRVLLVEALTHASYTGVIETQS-YERLEFIGDAVLDMIV 1299

Query: 1305 TEYVKSFP 1312
            T+++   P
Sbjct: 1300 TDFLYHVP 1307


>gi|41469334|gb|AAS07190.1| putative ribonuclease III, 5'-partial (with alternative splicing)
           [Oryza sativa Japonica Group]
          Length = 538

 Score =  211 bits (537), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 165/572 (28%), Positives = 268/572 (46%), Gaps = 62/572 (10%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
           CI+FVER+I + V+E  +  +  ++   V ++ GS   + + + K   E++ESFR GKV+
Sbjct: 7   CIVFVERVITSIVLEHLLSSIHQMSGWNVKHMAGSRPGLLSQSRKNHTEIVESFRKGKVH 66

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           ++ AT ++EEG+ VP+C+ VIRFD   TV S+IQSRGRAR  NS ++L++ RG+++ +  
Sbjct: 67  IIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQSRGRARMENSDYLLLVGRGDVEAQTN 126

Query: 537 LFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEM 596
               + S + + + +L     +C     T  +   Y VEST A VT +SSV LIH +C  
Sbjct: 127 AEKFLASGQIMREESLRLGSISCQPLENTLCEDTYYRVESTRAIVTLNSSVPLIHFFCSK 186

Query: 597 LPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKL 656
           LPSD+Y+ P P F    A     C L LP ++P QT+        ++ K+ VCL+AC++L
Sbjct: 187 LPSDEYFNPLPRFDIDKASGT--CTLHLPKSSPVQTV--NVEGEGSILKETVCLKACQEL 242

Query: 657 HQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSG-RWGEKCG 715
           H +GAL D LLP ++ P +           P      + E     P   +   R   + G
Sbjct: 243 HAIGALTDSLLPELDVPCDEE---------PDIVVENKIEQPSYFPEEFVDNWRSFSRLG 293

Query: 716 VILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHL 775
            I + YK +      T   +  +L ++ +L +D  +   +L         T+   G +HL
Sbjct: 294 -IYYCYKISLEGCPKTASPTDILLALKCDLGSDFTSSSFKLPGGQDNASVTMKYVGIIHL 352

Query: 776 DADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSP-SYMYLLLPLEIV 834
           + +Q+  A+ FQ    + L G   ++  S+G + F      + +  P   +YLLLPL   
Sbjct: 353 NQEQVIIARRFQTTILSFLIGDDHLEV-SNGIKYF------HEMQVPIGVVYLLLPLV-- 403

Query: 835 NTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDV 894
                 S RI+W  +              F  +     N  + + C +      C   D+
Sbjct: 404 ------SGRIDWCSMK-------------FSSSPIYEANNKHMTHCHS------CKDIDL 438

Query: 895 IHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNT-----DDDSKTFVN 949
           +   +G      LK+ +V   H    Y I   ++        D N+     D    T+ +
Sbjct: 439 LQTKDGPFCRCILKNSIVCTPHNNIFYVISGFLD-------LDANSCLPQHDGTVVTYKD 491

Query: 950 YFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVN 981
           YF  ++G+ L    QPLL   +     N L N
Sbjct: 492 YFKTRHGLTLTFENQPLLAGSKHVKVRNFLHN 523


>gi|395331143|gb|EJF63525.1| P-loop containing nucleoside triphosphate hydrolase protein
           [Dichomitus squalens LYAD-421 SS1]
          Length = 1526

 Score =  210 bits (534), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 202/703 (28%), Positives = 319/703 (45%), Gaps = 108/703 (15%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ ++ + +KRRN +  L+TG+GKT IAV+ +K  A+       +K+  F+APTV LV
Sbjct: 23  RAYQQELLDESKRRNIVIALDTGSGKTHIAVLRVKYEAE----RESRKVSWFIAPTVALV 78

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            QQ +VI+      V    GA   ++W D+  W+  I K+ ++V TPQ+LLDAL   ++ 
Sbjct: 79  EQQSEVIKTAIPVSVGYVSGASEPNQWKDAGLWRGIIAKHRIMVTTPQVLLDALHHGYVD 138

Query: 166 L-DIVCFIVIDECHHATGNHPYTKIMKEFY-----------HKSDNKPKVFGMTASPVVR 213
           +   +  +V DE HHA G HPY  IMK+ Y             S  +P V G+TASP   
Sbjct: 139 MGSDISLLVFDEAHHAIGKHPYNMIMKKHYFGLPPRSPLGTSTSRVRPMVLGLTASPTYG 198

Query: 214 KGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFV--PSAKE---SCRFYDQSKFCG 267
             V  A        +LE  LDS + +   ++ E+  +V  P  K    +   + Q     
Sbjct: 199 ANVDVAF------RDLEKNLDSTIRSSRNNRHELAQYVHRPEFKHVIYASPIHVQDGIPS 252

Query: 268 SDLKGKLEVSWSKFD-----------ASLSKLQ--------GSQLNCYKDMDDKHKTLRK 308
            + K  LEV  ++ D           A L+KLQ          QL+  K +D K     K
Sbjct: 253 VNYKA-LEVVIAELDIEQDPSVIALRARLAKLQPGDDRRRVDQQLS--KALDKKDTFTHK 309

Query: 309 QLSDY-HAKILYCLDELGLICAYEAVKICLEKVLKAQEEC-EIYRQSSLQCKYFLEEVLH 366
            L D+       C+D LG   A   +   +E+  +A      I      + K +L  +L+
Sbjct: 310 GLRDFARTAADICID-LGTWAADWYIARVIERAKQAANPYNNIMSAWQEKEKRYLLGILN 368

Query: 367 VIGSALPLAD--KIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI 424
            +    P  D  +I  +        VD   +         LF S  +  +   IIFV R 
Sbjct: 369 RVSVMEPSEDIEQIVANLTPKVRTLVDSLLVEEA------LFRSMDE--EYSGIIFVTRR 420

Query: 425 IAAKVVERFVKKVPFLTHL-TVAYLTGSTTS---------VDALTPKVQKEVLESFRGGK 474
               V+   ++++P  +HL  +  L GS++S           ++  + Q +VL  F+ G 
Sbjct: 421 DTVLVLAELLRRIPETSHLFRIGCLLGSSSSFKRHSFLDITRSMLDESQSDVLRDFKIGD 480

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR 534
            NL+ +T V EEG+ +  C  V+RFD+P  V S+ QSRGRAR+  S F++M ++   ++ 
Sbjct: 481 KNLIVSTSVAEEGIDIQACGSVVRFDIPPNVVSWAQSRGRARRKRSSFVIMFDQAEPREV 540

Query: 535 NKLFDIIRSERSVTDTALSRDPE---ACFLKACTYVKTKSYI---VESTGASVTTDSSVN 588
            + ++   +ER +   A   DP    A  ++   +     Y    V STGA +T  ++V 
Sbjct: 541 VRKWE--ETERRM--MAAYNDPRRDAAASVEEDDFDDLDGYCEFEVASTGALLTIHTAVP 596

Query: 589 LIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPF-QTIVGP----------- 636
            ++ +C ++P+  +    PI++    + A E    LP +A F +   GP           
Sbjct: 597 HLNHFCAVIPTGGHEHLVPIYELDPPDYA-EGWHALPEHARFTERYTGPWGATVTLPRAL 655

Query: 637 -----------TSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
                        R K  ++Q V  EA   L+Q G LN+HLLP
Sbjct: 656 PPHLRKFSVDRIHRTKRRAQQRVAFEAYVALYQAGLLNNHLLP 698



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 119/292 (40%), Gaps = 46/292 (15%)

Query: 1022 VKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLE 1081
            V+   LLPS+++ L   +    LR  +   +    +    ++ A+T     E F  +RLE
Sbjct: 980  VQYTLLLPSILRWLAMALTVHSLRTSLFKQNPVSTVALRHLVTAITAPAAQERFHYQRLE 1039

Query: 1082 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
             LGD+VLK+  S  L+  +P  HEG LS ++  AV N  L +    + L  +I    F P
Sbjct: 1040 TLGDTVLKFITSNLLYADFPLWHEGYLSRKKDHAVANVNLARWAVKKGLYRWIIRDRFIP 1099

Query: 1142 RRWVAPGQLSLRPVPCECGVDTLE--VPLDGKFFTQD---TKVVVGKPCDMGHRWMGSKT 1196
            R+W  P   S      E   D      P       Q+    +   GK  D     + +K 
Sbjct: 1100 RKW-KPHYSSAAGAFDEILDDRSREGTPTASDAAAQNGNSKESRKGKAED-----LSTKM 1153

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITR-------ASLRSYVP 1249
            +AD  E+LIGA Y  GG   A+                  DC+T          L  Y+ 
Sbjct: 1154 LADVVESLIGAAYEDGGFDRAI------------------DCVTAFNLGLSWKKLPEYIG 1195

Query: 1250 RINEIKDI----------ESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYK 1291
             ++ + DI          E  I Y F  +  L +A+THAS Q  +   +L +
Sbjct: 1196 AMHAVDDIDDIPEQLALVEQMINYRFARRTFLVQALTHASYQGDFATMSLER 1247


>gi|334283448|gb|AAR82738.2| SD11113p [Drosophila melanogaster]
          Length = 1701

 Score =  209 bits (533), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 185/664 (27%), Positives = 319/664 (48%), Gaps = 77/664 (11%)

Query: 61  NTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116
           N I  L TG+GKT +A++++K    D  + I+S G  K  +F+  TV L  QQ   +R  
Sbjct: 2   NGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGG--KRALFMCNTVELARQQAMAVRRC 59

Query: 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDE 176
           T+F+V  Y G +GVD+W    W  EI KN VLV T Q+ LD + + +++L  +  ++IDE
Sbjct: 60  TNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQTYVALSSLSVVIIDE 119

Query: 177 CHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS 235
           CHH TG+HP+ + M+ F   +  K P+V G+T   V+ KG +   +   ++ ELE T   
Sbjct: 120 CHHGTGHHPFREFMRLFTIANQTKLPRVVGLTG--VLIKG-NEITNVATKLKELEITYRG 176

Query: 236 QVFTIEDKTEME-VFVPSAKES---CRFYDQ------SKFCGSDLKGKLEVSWSKFDASL 285
            + T+ D  EME V + + K +     F  Q      ++   ++++ K  VS    +  +
Sbjct: 177 NIITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISAEIE-KFYVSLDLMNIGV 235

Query: 286 SKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQ 344
             ++ S+ L C +  D   K+  KQL +     LY + E G+  A  A+   + +    +
Sbjct: 236 QPIRRSKSLQCLR--DPSKKSFVKQLFN---DFLYQMKEYGIYAASIAIISLIVEFDIKR 290

Query: 345 EECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY-SKAVDLGYIST 397
            + E      ++R +   C    E++ H++     L D  + D   +  ++ V + + + 
Sbjct: 291 RQAETLSVKLMHRTALTLC----EKIRHLLVQK--LQDMTYDDDDDNVNTEEVIMNFSTP 344

Query: 398 KLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVKKVPFLTH-LTVAYLT 449
           K+   L+ L +SF       + C++FVER    K +      +++  P L + LT  ++ 
Sbjct: 345 KVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYIQSTPELRNVLTPQFMV 404

Query: 450 G-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTV 505
           G +  S D    L  K QK  ++ FR G  NL+  + V+EEG+ V  C++V   D  KT 
Sbjct: 405 GRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDVQACNHVFILDPVKTF 464

Query: 506 SSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERS--------VTDTALSR-DP 556
           + Y+QS+GRAR   ++F+L       K+R K    I   R         + D  L + +P
Sbjct: 465 NMYVQSKGRARTTEAKFVLFTAD---KEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEP 521

Query: 557 EACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKY----- 611
           E   +K         +  E+ GA +  ++++ ++HRYC+ +P+D +    P F       
Sbjct: 522 ELYEIKGHFQDDIDPFTNEN-GAVLLPNNALAILHRYCQTIPTDAFGFVIPWFHVLQEDE 580

Query: 612 ------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALND 664
                  SA+  +   + +P N   + TI      N   +K     +AC+ L+ +G LN+
Sbjct: 581 RDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAAFKACKVLYSLGELNE 640

Query: 665 HLLP 668
             +P
Sbjct: 641 RFVP 644



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1173 FLAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNL 1232

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
                 D  +   +    F PR  W+ PG
Sbjct: 1233 LFCLIDADIPKTLNTIQFTPRYTWLPPG 1260



 Score = 43.9 bits (102), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 6/134 (4%)

Query: 1309 KSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDK 1368
            K  P  GE   S  ++  PKALGD+LE+++ AV +D + +L   W +   +  P +    
Sbjct: 1571 KGVPPKGEFNMST-NVDVPKALGDVLEALIAAVYLDCR-DLQRTWEVIFNLFEPELQEFT 1628

Query: 1369 LELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKG 1426
             ++P   +R+L+E   +   F       +  MV  +     K + + G G  + +  AK 
Sbjct: 1629 RKVPINHIRQLVEHKHAKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQ--AKL 1686

Query: 1427 KAASQLLKKLEVCE 1440
             AA   L++L  C+
Sbjct: 1687 SAAKHALQQLSKCD 1700


>gi|317035030|ref|XP_001400925.2| ATP-dependent helicase dcl2 [Aspergillus niger CBS 513.88]
          Length = 1407

 Score =  209 bits (532), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 179/658 (27%), Positives = 305/658 (46%), Gaps = 56/658 (8%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           + PR YQ+++FE + + N I  + TG+GKT IA++    I + ++SN   KLI FL PTV
Sbjct: 17  YRPRSYQVEMFEASLKENIIVTMGTGSGKTHIALL---RIIKELESNP-HKLIWFLTPTV 72

Query: 104 HLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRK 161
            L  QQ+  +  +              V+ W  Q  W   + +  V+V T  +L DA+  
Sbjct: 73  ALCLQQFKFLSDNIPAVRARTLTSLDKVELWTEQPVWDAILKEMQVVVSTHAVLADAMSH 132

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKVFGMTASPVVRKG 215
            F+ +  +  ++ DE HH    HP  KIM++FYH +  +      PK+ G+TASPVVR  
Sbjct: 133 GFVKITQLGLMIFDEAHHCMRRHPANKIMQDFYHPALERHGAEAVPKILGLTASPVVRSN 192

Query: 216 VSSAMDCEGQISEL---ESTLDSQVFTIEDKTEME--VFVPSAKESCRFYDQSKFCGSDL 270
               +  E  +  +     T  S++ T   +  ++  +F P   +  +        GS  
Sbjct: 193 RQELLKIESNLDAVCKTPRTHRSELMTHTHRPHLQQILFTPVLLDDLQ-------VGSKT 245

Query: 271 KGKLEVSWSKF----DASLSKLQGSQLN---CYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
              L  +W+      D  + KL+ S L+     K ++        QL  +  + L+  +E
Sbjct: 246 LKALVSAWTSLRLEDDPYIKKLRKSPLDGRALQKVLESGKTYCNDQLKRFATRSLHIFEE 305

Query: 324 LGLICAYEAVKICLEKV-LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
           LG   A   +   +E++  +A    +    +  +  Y L+     I S LP+ +      
Sbjct: 306 LGEWAADYFIHASIEQLKARAGNSADTMGWTDEEKAYLLD-----IVSKLPIPN-----I 355

Query: 383 GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
              +S   D   IS+K   LL+ FL          +IF ++     V+E+ +   P   H
Sbjct: 356 DLTHSDP-DRIPISSKFRSLLE-FLDTKGEPNFSGLIFAKQRATVSVMEKLLSIHPVTKH 413

Query: 443 LT-----VAYLTGSTTSV--DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSY 495
                  V +  G +  V  + L  ++Q++ L  FR G+ NL+ ATDV+EEG+ +  CS 
Sbjct: 414 RFRCASFVGWSGGGSKDVLGELLDARMQRDTLSEFRTGQKNLIIATDVLEEGIDISACSV 473

Query: 496 VIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR-NKLFDIIRSERSVTDTALSR 554
           V+ FD P  + S++Q RGRAR   S + +M    +     +K  D+ ++     +    R
Sbjct: 474 VVCFDKPPNLKSFVQRRGRARHRQSTYAIMFATDDESSALSKWEDLEQAMIEAYEDDERR 533

Query: 555 DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKY-KS 613
             EA  L+A      +   V+STGA +T D++V  ++ +C +LP   Y + +P F Y K 
Sbjct: 534 LREAWALEAINEEVVERLEVQSTGAVLTADTAVAHLNHFCAVLPRQPYASNEPEFSYEKD 593

Query: 614 AEEAYECELTLPS--NAPFQTIVGPT-SRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
             +     +TLPS  +   + I G    + +  +++    +A ++L++ G L+DHLLP
Sbjct: 594 DADLLRGTVTLPSCVHPGVRRIQGQRWWQTERAARKEAAFQAYKRLYEFGLLSDHLLP 651



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 120/274 (43%), Gaps = 55/274 (20%)

Query: 1031 VMQRLESLMLASQLREEINCHSRNFHIPS-SLILEALTTLGCCESFSMERLELLGDSVLK 1089
            ++ RLE+ ++A++L E I    R+    S   I+ A+T        + +R E  GDSVLK
Sbjct: 905  ILDRLEATLVATRLCETI---LRDLEFSSIRHIITAITAPSAQSLTNYQRYEFFGDSVLK 961

Query: 1090 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAP-- 1147
            + VSC LF  +P  HEG LS  R   V NS L +   D  L  +I +  F PR+W AP  
Sbjct: 962  FTVSCQLFFQHPNWHEGYLSEGRDEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLI 1021

Query: 1148 -GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
              ++SL P                                   R M +K +AD  EALIG
Sbjct: 1022 SEKISLTP---------------------------------KQRTMSTKVLADVVEALIG 1048

Query: 1207 AYYVGGGLIAALYMMKWLGIDADLE------VSLVDDCITRASLRSYVPRINEIKDIESK 1260
            A Y+ GG  AA   +     + +LE        +  D +T  +L            + + 
Sbjct: 1049 ASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVTNHTLND--------DHLMAH 1100

Query: 1261 IGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQ 1294
            IGY FT K LL E++TH S Q F      Y+ L+
Sbjct: 1101 IGYTFTNKSLLVESLTHPSCQ-FDTTTQSYQRLE 1133


>gi|213408108|ref|XP_002174825.1| dicer [Schizosaccharomyces japonicus yFS275]
 gi|212002872|gb|EEB08532.1| dicer [Schizosaccharomyces japonicus yFS275]
          Length = 1384

 Score =  209 bits (532), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 200/716 (27%), Positives = 341/716 (47%), Gaps = 89/716 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN---GFKKLIIFLAPTV 103
           R YQ   + +A ++NT+ V+ TGAGKT++A+ LI+ + +   S      K++ IFL P V
Sbjct: 21  RNYQEVAYNIAIKQNTLLVMNTGAGKTLLAIKLIEYVLEQENSTCEKTSKRISIFLVPKV 80

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            LV QQ D ++   +  V  + G    + +    + ++  KNDV+V+T  +L + L K F
Sbjct: 81  PLVEQQADYVQTQLNRPVGRFCGEIS-NLYHDNVFAEKFMKNDVVVVTGGLLFECLSKGF 139

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKVFGMTASPVVRKGVS 217
           + L  V  ++ DECHHA+ +  Y +IMK FYH+   +      P+VFGMTASP++  G  
Sbjct: 140 IKLSDVNLLIFDECHHASKDDVYVRIMKYFYHEPLREHPETIMPRVFGMTASPLM--GNK 197

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
            A+  E + ++LE   DS++  I D+                 D  K   S     L+ S
Sbjct: 198 WAL--EKEFNKLEDIYDSKLCIITDE-----------------DLGKELRSPKTFILQYS 238

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL 337
              F ++ SK+        ++ D        +L     +++    ELGL     + +  L
Sbjct: 239 IEDF-STQSKVSDRFWKLTENFD--------RLKQIITRVVTETVELGLWFGDYSWQFFL 289

Query: 338 EKVLKAQEE-----CEIYRQSSLQCKYFLEEV--LHVIGSALPLADKIFLDFGFDYSKAV 390
              LK  +       E+ ++  L  +   EEV   +++ ++  L  K  L+ G D +  V
Sbjct: 290 RHALKKYDARRLRGAEVPKEEVLAFEALQEEVRKANLLTTSKQLR-KPKLN-GIDVTNKV 347

Query: 391 DLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG 450
            + Y      + L+   +   + +V+  +  ER + A +++ F  K+ F   + V  L G
Sbjct: 348 IILY------KFLRNLFATNSTARVIIFV--ERKVTAFLLKLFFDKIDF-EGIRVESLVG 398

Query: 451 STTSV---DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
           + ++    + ++ K+QKEV+  F+ G  N+L AT + EEG+ +P+C  V RF L KT   
Sbjct: 399 NGSNQAGDEQMSYKLQKEVIRRFKHGSANVLVATAIAEEGLDIPSCDVVFRFSLCKTAIQ 458

Query: 508 YIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTAL-----SRDPEACFLK 562
            IQS+GRAR + S F+ +L     +   +LF  + ++  +    L     +R P+  F  
Sbjct: 459 LIQSKGRARANTSIFVNLLS----EDEKELFSELCTKEIILKETLYAYCCTRSPKVEFDN 514

Query: 563 ACTYV---KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYE 619
             T       + Y +E TGA +T   +V+L++  C+ +PSD Y    P FK ++  E + 
Sbjct: 515 NITDFFNDDNELYKIEETGALLTPFIAVSLLYGLCQRIPSDPYTLYLPEFKIQNEGEHFT 574

Query: 620 CELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEAC---------EKLHQVGALNDHLLPSV 670
           CEL LP+       + P  RNK  +K+   ++AC         +K  ++    D LL + 
Sbjct: 575 CELRLPAILKIPPYITPPCRNKKKAKRYAAVKACLQLIESELIDKRLRIKTFYDELLEAE 634

Query: 671 EEPSEN---NLISKKNES-LPGAGTTKR--KELHGTTP-IRALSGRWGEKCGVILH 719
           +E  E+   NL  +K E   P     K+  K ++ T   + +L G    KC  +L+
Sbjct: 635 KEEQEHSMKNLPQQKWERCTPSVWQVKKHVKTVYATVIFVDSLEGESSFKCYPLLY 690



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 144/347 (41%), Gaps = 61/347 (17%)

Query: 938  GNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMN 997
            G  D+++KTFVN        V+  P    LR        N L+ F     + +G+K    
Sbjct: 839  GAKDEETKTFVN--------VIRCP----LRT-------NFLL-FQSRAVATQGAKRRKR 878

Query: 998  TKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHI 1057
              + Q    +    L+ +  P  +  S  LLPS++   E + L   LR  +        I
Sbjct: 879  ETRVQ---RIEVTKLLIMPFPYEIRNSALLLPSLLYMFEQVHLVDALRVRLQAK-----I 930

Query: 1058 PSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1117
             +  +LEA T+ G    F  +R E  GD+ LK A S  +FL+Y    E +L   R   + 
Sbjct: 931  STKSLLEASTSPGSVLPFDYDRYEFYGDTFLKLAASNSVFLSYLWVPECKLHIERKRIIR 990

Query: 1118 NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDT 1177
            NSTL  +     L G++    F  + ++  G    +P                   TQ +
Sbjct: 991  NSTLFTISKKHDLPGFLLSEPFVIKTFIPFG---YQP-------------------TQKS 1028

Query: 1178 KVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDD 1237
            K  + +      + + +KT+AD  E+ +GA     G+  AL +   LG++   + +  D+
Sbjct: 1029 KNKMER-----SQLLANKTVADIVESSLGACLYDSGVDEALALGTRLGLNF-YKTTKWDE 1082

Query: 1238 CITRASLRSYVPR-----INEIKDIESKIGYEFTVKFLLQEAITHAS 1279
              +  ++ + VP            +ES +GY F    LL+ A THAS
Sbjct: 1083 WNSVFNVENLVPSAENDCFKHASGLESLVGYTFKHPGLLKIAFTHAS 1129


>gi|169768544|ref|XP_001818742.1| ATP-dependent helicase dcl2 [Aspergillus oryzae RIB40]
 gi|121804870|sp|Q2UNX5.1|DCL2_ASPOR RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease dcl2; Includes: RecName:
           Full=ATP-dependent helicase dcl2
 gi|83766600|dbj|BAE56740.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|391868391|gb|EIT77606.1| dsRNA-specific nuclease Dicer [Aspergillus oryzae 3.042]
          Length = 1377

 Score =  209 bits (531), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 193/675 (28%), Positives = 307/675 (45%), Gaps = 67/675 (9%)

Query: 37  SSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLI 96
           S+   + + PR YQ ++FE + + N I  ++TG GKT IA++    IA  ++  G +KL 
Sbjct: 7   SNGTGLLYKPRQYQYEMFEASLKENIIVAMDTGTGKTQIALL---RIAHQLEGGGPRKLT 63

Query: 97  IFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQI 154
            FL PTV L  QQY+VIR H          G   V+ W SQ  W + +    V+V T  +
Sbjct: 64  WFLTPTVALCLQQYEVIRSHLPAVRACTITGLDKVERWKSQYIWDELLKDKQVVVSTHAV 123

Query: 155 LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS------DNKPKVFGMTA 208
           L +AL   F+ +  +  ++ DE HH    HP   IM +FYH +      D+ P + G+TA
Sbjct: 124 LFEALTHGFVRISQLGLLIFDEAHHCMRRHPANMIMLDFYHPTLRKHGRDSVPCILGLTA 183

Query: 209 SPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKE---SCRFYDQSK 264
           SPVVR           ++  LES LDS   T +  K E+  +    +     C+  D+  
Sbjct: 184 SPVVRSK-------SQEMKTLESNLDSICKTPQVHKQELTTYAHRPELLPIICKAIDEGP 236

Query: 265 FCGSDLKGKLEVSWSKF----DASLSKLQGSQLNC---YKDMDDKHKTLRKQLSDYHAKI 317
             G      LE +W       D       GS LN    YK +  +     +Q+  +  + 
Sbjct: 237 --GGRALQALEHAWDTADIDGDPDAIPQNGSLLNGSGEYKALMVRKTLCNEQIKRFVDRS 294

Query: 318 LYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIG--SALPLA 375
            +   ELG   A   +   +E++          R  SL   +  EE  ++    S LP+A
Sbjct: 295 RHIFAELGEWAADYYICTSVEQLRTT------IRDQSLTMDWEDEERAYLSNFLSKLPVA 348

Query: 376 D-KIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434
           + +  L    +++       +S KL  L+  FL      +   +IFV++ +   V+ R +
Sbjct: 349 EVQANLADPNNFT-------MSPKLAALIN-FLDKFDDPEFSGLIFVKQRVTVSVLARLL 400

Query: 435 KKVP-----FLTHLTVAYLTGSTTSV---DALTPKVQKEVLESFRGGKVNLLFATDVIEE 486
              P     F     V    GS       D    K Q+  ++ FR G+ NL+  T V+EE
Sbjct: 401 SLHPQTRDRFRCAAYVGMSVGSCRQDMVGDWHNAKKQRGTMDDFRSGRKNLIVTTSVLEE 460

Query: 487 GMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML----ERGNLKQRNKLFDIIR 542
           G+ V  C  V+ FD P  + S+IQ RGRARQ  S + +M     E G+L+ R ++ +   
Sbjct: 461 GIDVTACRVVVCFDKPANLKSFIQRRGRARQQKSTYAIMFSTADEHGDLR-RWQILEQAM 519

Query: 543 SERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKY 602
            E    +    R+ EA   +A      +   VE+TGA +T DS V  ++ +C +LP ++Y
Sbjct: 520 VEAYQDEERRLREAEA--QEAVDENVPEMITVEATGAVITPDSVVTHLYHFCAVLPEERY 577

Query: 603 YTPKPIFKY-KSAEEAYECELTLPS--NAPFQTIVGPT-SRNKNLSKQLVCLEACEKLHQ 658
              +P F + K  +   +  + LPS  +   + I G    +++  + +    +A   L++
Sbjct: 578 VDNRPEFSFEKDRQGLIKGTVILPSCVHPKVRRIQGKLWWKSERAAVKETAFQAYRALYE 637

Query: 659 VGALNDHLLPSVEEP 673
            G LNDHLLP  + P
Sbjct: 638 FGLLNDHLLPLTKNP 652



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 127/301 (42%), Gaps = 35/301 (11%)

Query: 1005 VHMPPELLVRVD-VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLIL 1063
            VHM       VD +P+S       +P ++ RLES ++A++L   I C      I    ++
Sbjct: 875  VHMVAAESCTVDKLPVSTAIFGLFIPHIVDRLESTLIANRLCATILCDVGFADIQH--VI 932

Query: 1064 EALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHK 1123
             A+         + +R E LGDS+LKY VSC LF       EG L+  R+  V N  L +
Sbjct: 933  TAIMAPSAQGVTNYQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRTTIVQNPRLTR 992

Query: 1124 LGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGK 1183
               D  L  +I   A  PRRW+AP  +S R                          V   
Sbjct: 993  AALDAGLDSFIITKALTPRRWIAP-LISTR--------------------------VGAA 1025

Query: 1184 PCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRAS 1243
            P     R M +K +AD  EALIGA Y+ GG   A         + + +   +   IT+  
Sbjct: 1026 PV---KRQMSAKVLADVIEALIGAAYLDGGHSKAQICTHCFLPEVNRQPLDIPSLITQTE 1082

Query: 1244 LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ 1303
                   I +  D++  +GY F  + LL EA+TH S Q     Q+ Y+ L+     +L  
Sbjct: 1083 HGRTARHIID-GDLQRHLGYTFKNEDLLIEALTHPSCQHDQTTQS-YQRLEFLGDAILDM 1140

Query: 1304 I 1304
            +
Sbjct: 1141 V 1141


>gi|158706449|sp|A2R345.2|DCL21_ASPNC RecName: Full=Dicer-like protein 2-1; Includes: RecName:
           Full=Endoribonuclease dcl2-1; Includes: RecName:
           Full=ATP-dependent helicase dcl2-1
          Length = 1387

 Score =  209 bits (531), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 179/658 (27%), Positives = 305/658 (46%), Gaps = 56/658 (8%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           + PR YQ+++FE + + N I  + TG+GKT IA++    I + ++SN   KLI FL PTV
Sbjct: 17  YRPRSYQVEMFEASLKENIIVTMGTGSGKTHIALL---RIIKELESNP-HKLIWFLTPTV 72

Query: 104 HLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRK 161
            L  QQ+  +  +              V+ W  Q  W   + +  V+V T  +L DA+  
Sbjct: 73  ALCLQQFKFLSDNIPAVRARTLTSLDKVELWTEQPVWDAILKEMQVVVSTHAVLADAMSH 132

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKVFGMTASPVVRKG 215
            F+ +  +  ++ DE HH    HP  KIM++FYH +  +      PK+ G+TASPVVR  
Sbjct: 133 GFVKITQLGLMIFDEAHHCMRRHPANKIMQDFYHPALERHGAEAVPKILGLTASPVVRSN 192

Query: 216 VSSAMDCEGQISEL---ESTLDSQVFTIEDKTEME--VFVPSAKESCRFYDQSKFCGSDL 270
               +  E  +  +     T  S++ T   +  ++  +F P   +  +        GS  
Sbjct: 193 RQELLKIESNLDAVCKTPRTHRSELMTHTHRPHLQQILFTPVLLDDLQ-------VGSKT 245

Query: 271 KGKLEVSWSKF----DASLSKLQGSQLN---CYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
              L  +W+      D  + KL+ S L+     K ++        QL  +  + L+  +E
Sbjct: 246 LKALVSAWTSLRLEDDPYIKKLRKSPLDGRALQKVLESGKTYCNDQLKRFATRSLHIFEE 305

Query: 324 LGLICAYEAVKICLEKV-LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
           LG   A   +   +E++  +A    +    +  +  Y L+     I S LP+ +      
Sbjct: 306 LGEWAADYFIHASIEQLKARAGNSADTMGWTDEEKAYLLD-----IVSKLPIPN-----I 355

Query: 383 GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
              +S   D   IS+K   LL+ FL          +IF ++     V+E+ +   P   H
Sbjct: 356 DLTHSDP-DRIPISSKFRSLLE-FLDTKGEPNFSGLIFAKQRATVSVMEKLLSIHPVTKH 413

Query: 443 LT-----VAYLTGSTTSV--DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSY 495
                  V +  G +  V  + L  ++Q++ L  FR G+ NL+ ATDV+EEG+ +  CS 
Sbjct: 414 RFRCASFVGWSGGGSKDVLGELLDARMQRDTLSEFRTGQKNLIIATDVLEEGIDISACSV 473

Query: 496 VIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR-NKLFDIIRSERSVTDTALSR 554
           V+ FD P  + S++Q RGRAR   S + +M    +     +K  D+ ++     +    R
Sbjct: 474 VVCFDKPPNLKSFVQRRGRARHRQSTYAIMFATDDESSALSKWEDLEQAMIEAYEDDERR 533

Query: 555 DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKY-KS 613
             EA  L+A      +   V+STGA +T D++V  ++ +C +LP   Y + +P F Y K 
Sbjct: 534 LREAWALEAINEEVVERLEVQSTGAVLTADTAVAHLNHFCAVLPRQPYASNEPEFSYEKD 593

Query: 614 AEEAYECELTLPS--NAPFQTIVGPT-SRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
             +     +TLPS  +   + I G    + +  +++    +A ++L++ G L+DHLLP
Sbjct: 594 DADLLRGTVTLPSCVHPGVRRIQGQRWWQTERAARKEAAFQAYKRLYEFGLLSDHLLP 651



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 120/274 (43%), Gaps = 55/274 (20%)

Query: 1031 VMQRLESLMLASQLREEINCHSRNFHIPS-SLILEALTTLGCCESFSMERLELLGDSVLK 1089
            ++ RLE+ ++A++L E I    R+    S   I+ A+T        + +R E  GDSVLK
Sbjct: 905  ILDRLEATLVATRLCETI---LRDLEFSSIRHIITAITAPSAQSLTNYQRYEFFGDSVLK 961

Query: 1090 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAP-- 1147
            + VSC LF  +P  HEG LS  R   V NS L +   D  L  +I +  F PR+W AP  
Sbjct: 962  FTVSCQLFFQHPNWHEGYLSEGRDEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLI 1021

Query: 1148 -GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
              ++SL P                                   R M +K +AD  EALIG
Sbjct: 1022 SEKISLTP---------------------------------KQRTMSTKVLADVVEALIG 1048

Query: 1207 AYYVGGGLIAALYMMKWLGIDADLE------VSLVDDCITRASLRSYVPRINEIKDIESK 1260
            A Y+ GG  AA   +     + +LE        +  D +T  +L            + + 
Sbjct: 1049 ASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVTNHTLND--------DHLMAH 1100

Query: 1261 IGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQ 1294
            IGY FT K LL E++TH S Q F      Y+ L+
Sbjct: 1101 IGYTFTNKSLLVESLTHPSCQ-FDTTTQSYQRLE 1133


>gi|391345092|ref|XP_003746827.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
          Length = 1446

 Score =  208 bits (530), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 192/713 (26%), Positives = 325/713 (45%), Gaps = 91/713 (12%)

Query: 38  STNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLII 97
           S ++  F  R YQ+++   A  RN I  L TG GKT ++V+LIK++    + +G  +  +
Sbjct: 17  SEHAGKFPARDYQIELLLKAVERNIIICLGTGTGKTFVSVLLIKELLYETRPDGGNRRSV 76

Query: 98  FLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
           FLAPTV LV QQ  VI++H D EV  Y+G   VD W    W++EI KN+VLVM PQ+  +
Sbjct: 77  FLAPTVPLVKQQAAVIKIHVDAEVGCYFGGDTVDNWQESEWRREIEKNNVLVMVPQVFSN 136

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK--SDNKPKVFGMTASPVVRKG 215
            L + F++LD +  +V DECH ATG   Y +IM+  Y K   + +P++ G+TAS + +K 
Sbjct: 137 ILNQNFINLDQINLMVFDECHAATGQSCYVQIMQNHYVKMGPEKRPRILGLTASVLNKKV 196

Query: 216 VSSAMDCE--GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273
            ++ +  E  G  S L+STL + +  +   T+    +   +ES      +     ++   
Sbjct: 197 KTTQVRSEIRGLCSRLDSTLATSMSAMNFGTKPREMIVEYQESDAVVAFAAAASPEV--- 253

Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
                  F A + K    ++  +  M    K+L  +L      +   L +   +    A+
Sbjct: 254 -----GNFSAKM-KTMLIEVGPHGAM----KSLEHRLKAVQHLLNVSLADKSRLDGLRAL 303

Query: 334 KICLEKVLKAQEEC-EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDL 392
            + +E   +    C +  R+  ++  Y+      V+      AD I  D         DL
Sbjct: 304 LLEIETARERSTACLQRIREGEMRNPYY------VLCPDPGAADTIPAD---------DL 348

Query: 393 GY-ISTKLHELLQLFLSFGKSTQVLCIIFVER-------------IIAAKVVERFVKKVP 438
            + +  KL  LL +F +F    + LC +   R              ++ K  +RF    P
Sbjct: 349 EFSVPPKLRRLLNIFETFRDCGRELCCVVFARERYTVFALWCVLTTLSRKHPQRFGFIRP 408

Query: 439 -FLTHLTVAYLTGSTTSVDALTPK--VQKE--VLESFRGGKVNLLFATDVIEEGMHVPNC 493
            F+     + L    T +     +  V+ E   LE+FR G  N+L AT VIEEG+ VP C
Sbjct: 409 GFVMGAGNSSLKCEETKIVDFADEGFVENEGSTLENFRTGVHNVLVATSVIEEGVDVPQC 468

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQF-ILMLERGNLKQRNKLFDIIRSERSVT---- 548
           + ++R +      SY+Q RGRAR   S + IL+      K  + + D   +E+ +T    
Sbjct: 469 NLIVRMNGDMNFRSYVQGRGRARAKPSIYAILVAATSAAKVNSDIGDFKVTEQIITRYCQ 528

Query: 549 ------------DTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEM 596
                       + AL  DP+   + A       S I       +T  S+ +++  YC+ 
Sbjct: 529 EHDMDVMCESDVELALEGDPDLPTIYANPEDPLNSAI-------ITAQSARSVLQWYCDT 581

Query: 597 LPSDKYYTPKPIFKYKSA------EEAYECELTLPSNAPF--QTIVGPTSRNKNLSKQLV 648
           L +D++   +P+  Y S       E    C + LP  +    + + G    +K  S+   
Sbjct: 582 LGNDRFQVMRPLISYHSRPSKNQNEVESRCSILLPKASKLYPEEVYGKWLPSKPKSRVSA 641

Query: 649 CLEACEKLHQVGALNDHLLPSVEEPS------ENNLISKKNESLPGAGTTKRK 695
            L  C++L+++  L ++L+P  + P        ++ +S + +SL G  T ++K
Sbjct: 642 ALATCKRLYELDELTENLVPR-KRPKPGVYTWTDDQVSDEVKSLFGGHTIQQK 693



 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 172/450 (38%), Gaps = 116/450 (25%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            IL ALT     +  + ER E+LGDS LK AV+ HLF       EG L+A R   + N  L
Sbjct: 1009 ILTALTPSSAQDVVNSERFEVLGDSFLKIAVTLHLFPREDLPDEGTLTAERCRLISNMNL 1068

Query: 1122 HKLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
             KL   +K+   +    F  R  +  PG +S                   K   Q  K  
Sbjct: 1069 LKLAVPKKIHEAVESRIFSARESFRVPGMISRE---------------GNKLQLQVYK-- 1111

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCIT 1240
                         SK  AD  EA+IG Y    G I AL  +++LG+      S     ++
Sbjct: 1112 -------------SKICADSVEAMIGVYLERSGPIGALEFLRYLGLSLSDSDSGS--FLS 1156

Query: 1241 RASLRSYVP------------RINEIKD-IESKIGYEFTVKFLLQEAITHASVQ------ 1281
            R  L SY P            R N++   +ES +GY F  +  L EAITH S        
Sbjct: 1157 RFDL-SYDPVVGGNHDYISIRRHNDVMSRVESILGYRFKNRLYLLEAITHQSYNNRVTHS 1215

Query: 1282 ----EF------------YCYQN------------------------------LYKHLQH 1295
                EF            + + N                              L + L H
Sbjct: 1216 YERLEFLGDAVIDYLVSCFIFTNDPHLGPGQLTSVRSALVCNNQFAQIVTKAGLSRCLLH 1275

Query: 1296 CSTLLLSQITEYVK---------SFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTK 1346
             S LL   +T Y +         SF    ET D+   + APK  GDL+ES++GAV ID+ 
Sbjct: 1276 RSPLLFRMMTSYTEAVEIGRPCDSFIGDDETEDAD-LVDAPKPFGDLMESLIGAVFIDSN 1334

Query: 1347 LNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQ 1406
             +    W +F+ ++   V  + L+  P R  I + + +       C     ++  + R++
Sbjct: 1335 QDFSRTWDVFRGLMGDRVLLETLKDNP-RNPIAVLEEM---FPSGCEYSKAIIREDKRIE 1390

Query: 1407 LKDVLLVGEGQERSRKAAKGKAASQLLKKL 1436
            +    L   G+  S  + K K A  LL K+
Sbjct: 1391 MT---LTVAGRNFSAVSRKKKIAKLLLAKI 1417


>gi|302764440|ref|XP_002965641.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
 gi|300166455|gb|EFJ33061.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
          Length = 524

 Score =  208 bits (529), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 174/632 (27%), Positives = 273/632 (43%), Gaps = 187/632 (29%)

Query: 1028 LPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSV 1087
            LP +  R+E +M A QLR+ IN     ++IP+S ILEALT   C E +  ER+ELLGD+ 
Sbjct: 15   LPHLRNRVERMMQAIQLRKAIN-----YNIPASKILEALTAANCHEPYCYERIELLGDAY 69

Query: 1088 LKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAP 1147
            LK+AVS  L+L +    EG+L+  R   + NS LH L  ++ L+ Y+R + F P R    
Sbjct: 70   LKWAVSTRLYLKFSDFPEGELTITRGKIISNSALHYLALEKGLETYVRINPFVPGR---- 125

Query: 1148 GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGA 1207
                                               +P D+  + + SK +A+  EALIGA
Sbjct: 126  -----------------------------------EPTDL--QELSSKVLANVVEALIGA 148

Query: 1208 YYVGGGLIAALYMMKWLGI-----DADLEVSLVDDCITRASLRSYVPRINEIKDIESKIG 1262
            YYV  G   A ++++WLGI     DA+L+++     ++   L S      + + +E+ +G
Sbjct: 149  YYVHHGDKGARHVVEWLGIETGFSDAELQIARAGSVVSPEVLNSI-----DFEGLENTLG 203

Query: 1263 YEFTVKFLLQEAITHASVQE--------------------------FYCYQNLY------ 1290
            Y F  + LL +A+TH+S ++                          ++ Y++L+      
Sbjct: 204  YSFRSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTRHIYFSYKDLHPGRLTD 263

Query: 1291 ---------------------KHLQHCSTLLLSQITEYVKSFPKPGET---TDSGPSMKA 1326
                                  H+ H S    SQI  Y K      E    +    ++KA
Sbjct: 264  LRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAKHALNMEENAIYSYGFGAVKA 323

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGY 1386
            PK LGD+ +S+VGAV ID+ LNLD+VW++F+P+L P+VTP+ + + P+REL ELCD    
Sbjct: 324  PKVLGDVFQSLVGAVYIDSGLNLDQVWKVFEPLLQPLVTPEAVPIHPVRELYELCDKHLK 383

Query: 1387 FVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKG 1446
             ++ + +L G++  A   +  K   ++G G    +K AK  AA   + KL+       K 
Sbjct: 384  KLEWDYSLSGDLFLARALVGNK---VLGRGTNVQKKMAKKLAAINAIAKLD-------KS 433

Query: 1447 ASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMK 1506
            AS                 P  PS + +   E +                          
Sbjct: 434  AS-----------------PLTPSQEEKASGEFS-------------------------- 450

Query: 1507 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSS---FVSKITLHIP 1563
                R +L +LC    WP P + T                  TG +    F    ++ I 
Sbjct: 451  ----RQALHELCSQRGWPCPDYNT---------------HSETGPAHAKMFTCTASVRIE 491

Query: 1564 EFGNVECNGDPRADKKSSFDSAALIMLHELER 1595
            +    EC G PR     + DSAA +++  L++
Sbjct: 492  QGEKQECIGQPRPTINKAKDSAARVLMETLQK 523


>gi|392585234|gb|EIW74574.1| P-loop containing nucleoside triphosphate hydrolase protein
           [Coniophora puteana RWD-64-598 SS2]
          Length = 1534

 Score =  207 bits (528), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 203/745 (27%), Positives = 326/745 (43%), Gaps = 116/745 (15%)

Query: 18  PNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAV 77
           P   D+ +S  DH  + P+  T  +    R YQL++F  + R N I   +TG+GKT+IA+
Sbjct: 10  PTSDDLEAS--DHGDETPAPRTPVVT---RDYQLEMFTASLRENIIVAQDTGSGKTLIAI 64

Query: 78  MLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEW-DSQ 136
           + +K   +       +K+  F APTV L  QQ DVI +     V    GA   ++W D  
Sbjct: 65  LRMKHEVE----REPRKVCWFFAPTVALCEQQRDVIALDIPVSVGLISGALEPNQWKDIA 120

Query: 137 CWQKEINKNDVLVMTPQILLDALRKAFLSL-DIVCFIVIDECHHATGNHPYTKIMKEFYH 195
            W+  + ++ ++V TPQ+LLDALR  ++ L + +  +V DE HHA  NHPY  IMKEFY 
Sbjct: 121 LWRGVLQRHRIIVSTPQVLLDALRHGYVKLGEDIGLLVFDEAHHAVDNHPYNCIMKEFYF 180

Query: 196 K--------------SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE 241
           +               + +P V G+TASPV    V ++M        LE  LD  V +  
Sbjct: 181 RVAVREHGAASGAESREERPMVLGLTASPVYGGNVEASMRI------LERNLDCIVRSPR 234

Query: 242 -DKTEMEVFV--PSAK----ESCRFYDQSKFCGSD---LKGKLEVSWSKFDASLSKLQGS 291
             ++++  FV  P  K        F+D++ +  S+   L   L     K D  +  L+G 
Sbjct: 235 LHRSQLISFVHRPIFKHVLYRPAPFFDKT-YTASNITALSSVLATLNVKDDPYIISLRGQ 293

Query: 292 QLNC------YKDMDDK-HKTLRKQLSDYHAKILYCLDELGLIC---AYEAVKICLEKVL 341
             +       Y   D K  KT++K+ +  H  +   +     IC      A    + K +
Sbjct: 294 LAHKTPGSPDYMRTDQKLSKTIKKEDTYTHRGLKDIVSTATEICFDLGRWAADWYVHKAI 353

Query: 342 KAQEECEIYRQSSLQC-----KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS 396
               E  +  +S+        K +L  +L  +  + P  D   ++ G           +S
Sbjct: 354 SLARENPMPYESAFTSVQEKEKAYLLRILARVHVSPPSYDPAAIEAG-----------VS 402

Query: 397 TKLHELLQLFLSFGKSTQVLC------IIFVERIIAAKVVERFVKKVPFLTH-LTVAYLT 449
            KL  L+   L+  +  +         ++FV R  A   +   +   P     L V  + 
Sbjct: 403 DKLCVLIDTLLAEKRGAEEEANEAYSGLVFVTRRDAVLSLAEVLAVHPRTAGVLRVGRIV 462

Query: 450 GSTTSV---------DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
           G++ S           AL      E L SFR G+ N+L AT V EEG+ +  C  V+R+D
Sbjct: 463 GTSESAYRKTLLDVTRALMRNTHGETLGSFRTGEFNVLVATSVAEEGLDIQACCNVVRWD 522

Query: 501 LPKTVSSYIQSRGRARQHNSQFILMLERGN---------LKQRNKLFDIIRSERSVTDTA 551
           +P  + S+ QSRGRAR+  S F+LM E GN         ++   ++ +   ++  +   A
Sbjct: 523 VPNNMVSWAQSRGRARRWRSTFVLMFESGNMDAAGVERWMQLERQMVEQYNNQMRLAGNA 582

Query: 552 LSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKY 611
           L R  E              + VESTGA +T  S+   ++ +C +LP+ ++   + ++  
Sbjct: 583 LPRYDEEDDEDQEDDDHAVRFTVESTGALLTLQSAPPHLNHFCSVLPNSRHTAHRALYDI 642

Query: 612 KSAE------------------EAYECELTLPSNAP--FQTIVGPTSRNKNLS-KQLVCL 650
              E                    + C +TLP   P   +T   P   +  LS ++ V  
Sbjct: 643 DPPEFPEGWHALDPRTNTLPYPGPFGCTVTLPRVLPPLLRTFSVPQKYSSKLSARRHVSF 702

Query: 651 EACEKLHQVGALNDHLLP--SVEEP 673
           +A + L+  G LN+HL+P  SV EP
Sbjct: 703 KAYKTLYDAGLLNEHLMPLTSVIEP 727



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 143/299 (47%), Gaps = 29/299 (9%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDS 1086
            L+PS+++ +     A+ LR  +    +   IP SL+  A++     E  + +RLE LGD+
Sbjct: 1003 LVPSILRYISVANTAASLRATLLTDPQLAEIPLSLVKMAISAPVSQEPTNYQRLESLGDA 1062

Query: 1087 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVA 1146
            VLK  V  +L+  +P  HEG L+ RR  AV N  L K    +KL  +I    F P+R++ 
Sbjct: 1063 VLKLVVGAYLYSEHPLWHEGYLTQRRDHAVSNVRLAKSAIQKKLYRWIVRDHFAPKRFM- 1121

Query: 1147 PGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
            P  L+                 D +  T + +         G   + +K +AD  E+LIG
Sbjct: 1122 PRYLT-----------------DNRGATNEEENSDENGNGKGKEDLSTKVLADVVESLIG 1164

Query: 1207 AYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRIN---EIKDIESKIGY 1263
            A YV GG   A+ +++   ID  L +S +   I  A+  +  P +    ++  +++ IGY
Sbjct: 1165 AAYVHGGFELAISLIR--TIDVHLALSPLSASI-EAAYAAADPSLEAPPQVAHVQNMIGY 1221

Query: 1264 EFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVKSFPK---PGETT 1318
             FT   LL EA+THAS Q      + Y+ L+     +L   I +Y+   PK   PGE T
Sbjct: 1222 TFTKPLLLVEALTHASHQTDLRTVS-YERLEFLGDAVLDMLIADYLYKHPKNFSPGEIT 1279


>gi|350399948|ref|XP_003485689.1| PREDICTED: endoribonuclease Dicer-like [Bombus impatiens]
          Length = 1490

 Score =  207 bits (528), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 193/640 (30%), Positives = 306/640 (47%), Gaps = 100/640 (15%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           FIPR YQ+ +FE A + N I  L TGAGKT IAVMLIK+++  I+    +  K  IF+  
Sbjct: 8   FIPRPYQIDLFETACKENVIIYLPTGAGKTFIAVMLIKELSADIRRPYAEGGKHTIFIVN 67

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV LV QQ D I+  T          +GVD W  + W + +N+++VLVMT QIL++AL  
Sbjct: 68  TVPLVIQQSDYIKRLTGLSCGTLSSEEGVDFWHDEEWNEHLNQHEVLVMTSQILVNALCH 127

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTA----SPVVRKGV 216
            ++ L+ +  I+ DECH A  +HP  +IM+ F +   + +P+V G++A    S V  K V
Sbjct: 128 GYIFLNRINLIIFDECHRAVNDHPMRQIMQLFENCPKEEQPRVLGLSASLLNSNVRLKKV 187

Query: 217 SSAMDCEGQISELESTLDSQV--FTIEDKTEMEVFVPSAKESCRFYDQSKF-----CGSD 269
            S M        LE T ++++   T+ DK+    +  S  E    +DQ        C ++
Sbjct: 188 QSVM------QSLEVTFNARIATATVADKS----YYASPIEEIIQFDQHIIDDVGECINN 237

Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDD----------KHKTLRKQLSDYHAKILY 319
           +  ++E+                LNC    D+          + KT  K+LS     I Y
Sbjct: 238 IIKEVELI---------------LNCIALKDNLKYNESSAEFRPKTTSKKLSGILRNIQY 282

Query: 320 CLDELGLICAYEAV---KICLEKVLKAQEECEIYR------QSSLQCKYFLEEVLHVIGS 370
                G+  A + V    I LE + K+ ++ E          + + C+  LE+ +   GS
Sbjct: 283 HFLRTGIYGASKCVLLHLIQLEYLKKSIDDVETLYILEYLITNVINCRKLLEDKMK--GS 340

Query: 371 ALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKST---QVL-CIIFVERIIA 426
             P  ++I+              Y S ++ +LL+    F  +    QV  CIIFV+R   
Sbjct: 341 --PEKERIY-------------NYSSDQIRKLLKALKDFYNNKHHDQVFCCIIFVQRRFT 385

Query: 427 AKVVERFVKKVPF----LTHLTVAYLTGSTTSVDALTPK-------VQKEVLESFRGGKV 475
           AK++ + +K +         L   ++ G  +S     PK         KEVL  FR G +
Sbjct: 386 AKILYQILKSISLHDEEYKFLHPEFVMG-VSSNPFKNPKELLCVSERNKEVLLRFRNGLL 444

Query: 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGN---LK 532
           N + ATDVI+EG+ VP CS +IR+DLP  V +YIQS+GRAR   S+++++L++ +   L+
Sbjct: 445 NCIVATDVIDEGIDVPKCSLIIRYDLPMDVRTYIQSKGRARHAYSRYVVLLQKDDSQYLR 504

Query: 533 QRNKLFDIIRS-ERSVTDTALSRD-PEACFLKACTYVK-TKSYIVESTGASV---TTDSS 586
           + N+   I +  ++ + D    R+ P    +++  Y    + Y V S    V   T   +
Sbjct: 505 RHNEYKKIEQHLKQLLVDKTDERNVPTENEIQSELYQHDIEPYQVISDDGQVCCITEQMA 564

Query: 587 VNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPS 626
           +N+I++YC  L   K+    PI+        Y      PS
Sbjct: 565 INVINQYCTSLLKSKFACLSPIWTLHKISNNYPPLYQFPS 604



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 123/264 (46%), Gaps = 40/264 (15%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            I  ALT  G  ++F++ERLE LGD+ LK+  S  L+  +PK  EG L+A +   + N  L
Sbjct: 1014 IAYALTKTGH-DAFNLERLETLGDAYLKFITSLFLYNEFPKHSEGYLTALKGKIIGNRNL 1072

Query: 1122 HKLGTDRKLQGYIRDSAFDP-RRWVAPGQLSLRPVP-----CECGVDTL---EVPLDGKF 1172
            +  G  + + G ++  +F P   ++AP     R V       +   + L   E+P D + 
Sbjct: 1073 YYCGIKKNIPGCMKVDSFIPLSNFIAPAYTVYRQVQDVLLHAKVSPNVLYEIEIPRDEQL 1132

Query: 1173 ---FTQDTKVVV--------------GKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLI 1215
                ++ TK  +              G    +G + +  KT+ADC EALIG Y    G+ 
Sbjct: 1133 SGHISEATKNAIQTKILDWETAEAQTGMEHYLGIQTVSDKTVADCVEALIGVYLRSMGIK 1192

Query: 1216 AALYMMKWL-----GIDAD--LEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVK 1268
              L +++W       IDA+  L  +  +  I+  ++   +P  +   +IE+K+GY F  +
Sbjct: 1193 DTLILLQWFQILPYKIDANELLFGTPQNPIISEGNINHLMPWAS---NIETKLGYRFNNR 1249

Query: 1269 FLLQEAITHASV---QEFYCYQNL 1289
              L +A TH S        CYQ L
Sbjct: 1250 GYLLQAFTHPSYTPNNMTECYQRL 1273



 Score = 43.9 bits (102), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELC 1381
            +  PK LGD+ ES++GA+ +D+  NL  VW I   I+   +      +P  P+R L E  
Sbjct: 1372 VDVPKVLGDIFESVIGAIYMDSNKNLTVVWNIVYSIMHKEIDEFSKNIPKQPIRVLYETH 1431

Query: 1382 DSLGYFVKENCTLKGEMVHAELRLQL 1407
             +   F+K        +V   L++ +
Sbjct: 1432 GARPQFLKATIIDNTNIVMVPLKVTI 1457



 Score = 43.1 bits (100), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 14/104 (13%)

Query: 942  DDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKP 1001
            D   T+++Y+ EK+ +V+ +  QP+L +K      + ++  +    S K           
Sbjct: 795  DHFSTYIHYYKEKHRLVINNLEQPMLEVKSISRAIDYIMPRDKSTESKKE---------- 844

Query: 1002 QMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
                H+ PEL +R++ P         LPS++ R+  L++A  LR
Sbjct: 845  ----HLVPELCIRINFPALYWLKATTLPSILHRVSQLLIAEDLR 884


>gi|343791208|gb|AEM61141.1| RNase III dicer-like protein [Puccinia striiformis f. sp. tritici]
          Length = 1386

 Score =  207 bits (528), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 192/676 (28%), Positives = 297/676 (43%), Gaps = 109/676 (16%)

Query: 36  SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL 95
           S   +S + IPR+YQ ++ E AK+RN I   +TG GKT++A+ LI   A   KSN    L
Sbjct: 11  SPQNSSSSKIPRLYQAELLEEAKKRNIIIRADTGTGKTLVALNLIAWTAAQPKSNPDDHL 70

Query: 96  I-IFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
           I  FL PT  LVHQQ + I+  +   V+ Y G    + W+   WQ E+N+ DVLV T Q 
Sbjct: 71  IQAFLVPTRPLVHQQAEYIQSQSILRVKAYTGDLQPELWNIDKWQSELNEVDVLVSTAQ- 129

Query: 155 LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTAS 209
                         V  ++ DE HH   NH Y +IM+  YH+     ++  PK+ G+TAS
Sbjct: 130 --------------VSLLIFDEAHHCRKNHVYNQIMRSHYHRLAKNPTNRLPKILGLTAS 175

Query: 210 PVVR-KGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS 268
           P+   K +  A   E  I  L+S+L +Q++ ++                R  D       
Sbjct: 176 PIWNYKDLDKA---EDDIRSLQSSLAAQIYEVK----------------RHID------- 209

Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
                        D S    + ++L  Y +       L     D   ++L       LI 
Sbjct: 210 -------------DVSQHNFKPTELAIYFEPSPDFVKLSHHPWDQINELLTLHASPKLIV 256

Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF---- 384
           A+E+V +          E   Y   SL    +L+ +L  IGS   L     LD       
Sbjct: 257 AFESVSL----------ELGTY-AYSLAILDWLKSLL-TIGSTKQLMSGRLLDPSHQERI 304

Query: 385 -----DYSKAVDLGYI-----STKLHELLQLFLSFGKST---QVLCIIFVERIIAAKVVE 431
                   + VD+  I     S K+  L ++ +++ +       LCI+FVER   A+++ 
Sbjct: 305 QGLIKQLDETVDIDDIPEDQLSAKVIALNKILVNYKEKDDHGNFLCIVFVERRQHAQLLP 364

Query: 432 RFVKKVPFLTH-LTVAYLTGSTTSVD------ALTPKVQKEVLESFRGGKVNLLFATDVI 484
             +++   L   L  A LTG     +       +  + QK+ +  FR G+ NL  AT V 
Sbjct: 365 ILLERNTQLKDFLRPAALTGHGGHNENDIIGIKMDSRTQKKTVAKFRTGEHNLTIATSVA 424

Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSE 544
           EEG+   +C  VIRFDL  T   YIQSRGRAR  +S++I+ML  G+  +    +     E
Sbjct: 425 EEGLDFRSCRVVIRFDLITTWKGYIQSRGRARARDSEYIVMLPAGSSSK----YLAFSGE 480

Query: 545 RSVTDTALSRDPEACFLKACTYVKTKSYIV---ESTGASVTTDSSVNLIHRYCEMLPSDK 601
                 AL   PE   +       T   I    +   + +T  ++ +L++  C+++P D+
Sbjct: 481 EDNLKAALYDRPENELIGEGEVESTPQLICRLPDGKDSILTYSAATSLLNDVCQLIPPDE 540

Query: 602 YY-TPKPIFKYKSAEEAYECELTLPSNAPF----QTIVGPTSRNKNLSKQLVCLEACEKL 656
           +     P ++     + + C++TLP  A      +T  G     K  +K+    EAC  L
Sbjct: 541 FLPIVAPEYEMTCLGDNFICQVTLPPMAALDPSQRTFKGLEMTTKKEAKRSAAFEACRVL 600

Query: 657 HQVGALNDHLLPSVEE 672
            + G LN+H LP  E+
Sbjct: 601 RERGVLNEHFLPQRED 616



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 126/290 (43%), Gaps = 43/290 (14%)

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            +P +L     +P ++ K    LPS+ + +   + A+ L E++N  +    I   L ++AL
Sbjct: 875  LPLKLCTGTHIPRTLWKVFSYLPSLTRLVHDSLQATALFEQLNFPT----ISLLLGMQAL 930

Query: 1067 TTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
            T  G    +  + LE +GD+ LK A S H++L++ KK EG +S  RS +V N+ L +   
Sbjct: 931  TPPGVGVPWDYQTLETVGDTFLKLATSVHVYLSHLKKGEGDMSHVRSKSVDNAYLRRKAV 990

Query: 1127 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD 1186
               L  +I    F   R+                              +D +   GK   
Sbjct: 991  QANLPSFILSQRFRTDRF------------------------------RDAQTEDGKELA 1020

Query: 1187 MG--HRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWL----GIDADLEVSLVDDCIT 1240
             G   R +  + ++D  EAL+GA ++ GG+   L +   L    G         ++    
Sbjct: 1021 NGSFSRTIPRRVLSDVVEALLGAGFLTGGIELGLKVGTALDLCFGGTVPWNQRTLNLSFE 1080

Query: 1241 RASLRSYVPRI-NEIKDIESKIGYEFTVKFLLQEAITHASVQEFY--CYQ 1287
             A+L    P I  + + ++ KIGY F  + LL +A+TH S   F   CY+
Sbjct: 1081 SAALSRLDPSILLKCETLQQKIGYVFKEQLLLVQALTHRSANSFMTNCYE 1130


>gi|340712553|ref|XP_003394821.1| PREDICTED: endoribonuclease Dicer-like [Bombus terrestris]
          Length = 1488

 Score =  207 bits (527), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 192/636 (30%), Positives = 312/636 (49%), Gaps = 92/636 (14%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
           FIPR YQ+ +FE+A + N I  L TGAGKT IAVMLIK+++  I+    +  K  IF+  
Sbjct: 8   FIPRPYQIDLFEIACKENVIIYLPTGAGKTFIAVMLIKELSADIRRPYAEGGKHTIFIVN 67

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV LV QQ D I+  T          +GVD W  + W + +N ++VLVMT QIL++AL  
Sbjct: 68  TVPLVIQQSDYIKRLTGLSCGTLSSEEGVDFWHDEEWNEHLNNHEVLVMTSQILVNALCH 127

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTAS----PVVRKGV 216
            ++ L+ +  I+ DECH A  +HP  +IM+ F +   + +P+V G++AS     V  + V
Sbjct: 128 GYMFLNRINLIIFDECHRAVNDHPMRQIMQLFENCPKEEQPRVLGLSASLLNANVRLEKV 187

Query: 217 SSAMDCEGQISELESTLDSQVFT--IEDKTEMEVFVPSAKESCRFYDQSKF-----CGSD 269
            S M        LE T ++++ T  + DK+    +  S  E    +DQ        C ++
Sbjct: 188 QSVM------QSLEVTFNARIATATVADKS----YYASPIEEIIQFDQHVIDNVGECINN 237

Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDD----------KHKTLRKQLSDYHAKILY 319
           +  ++E               S LNC    D+          + KT+ K+LS     I Y
Sbjct: 238 IIKEVE---------------SILNCAVLKDNLKYNESSAEFRPKTISKKLSCILRNIQY 282

Query: 320 CLDELGLICAYEAVK---ICLEKVLKAQEECEIYR------QSSLQCKYFLEEVLHVIGS 370
                G+  A + V    I LE + K+ ++ E            + C+  LE+ +   GS
Sbjct: 283 HFLRTGIYGASKCVLLHLIQLEYLKKSIDDVETLYILEYLITKVINCRKLLEDKMK--GS 340

Query: 371 ALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLC-IIFVERIIAAKV 429
             P  ++I+ ++  D  +         KL ++L+ F +   S QV C IIFV+R   AK+
Sbjct: 341 --PEKERIY-NYSSDQIQ---------KLFKVLKDFYNNKHSDQVFCCIIFVQRRFTAKI 388

Query: 430 VERFVKKVPFLTH----LTVAYLTGSTT-----SVDAL-TPKVQKEVLESFRGGKVNLLF 479
           + + +K V         L   ++ G ++     S + L   +  KEVL  FR G +N + 
Sbjct: 389 LYQILKSVSIYDEECKFLHPEFVIGVSSNPFRNSKELLCVSERNKEVLLRFRNGSLNCIV 448

Query: 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGN---LKQRNK 536
           ATDVI+EG+ VP CS +IR+DLP  V +YIQS+GRAR   S+++++L+  +   L++ N+
Sbjct: 449 ATDVIDEGIDVPKCSLIIRYDLPMDVRTYIQSKGRARHAYSRYVVLLQSDDSQYLRRHNE 508

Query: 537 LFDIIRS-ERSVTDTALSRD-PEACFLKACTYVK-TKSYIVESTGAS---VTTDSSVNLI 590
              I +  ++ + D    R+ P    +++  Y    + Y V S       +T   ++++I
Sbjct: 509 YKKIEQHLKQLLVDKTDERNLPTENEIQSELYQHDIEPYQVISDDGQICCITEQMAISII 568

Query: 591 HRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPS 626
           ++YC  L   K+    PI+  +   E +      PS
Sbjct: 569 NQYCTSLLKSKFACLSPIWTLRKISENHVPMYQFPS 604



 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 125/264 (47%), Gaps = 40/264 (15%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            I+ ALT  G  ++F++ERLE LGDS LK+  S  L+  +PK  EG L+A +   + N  L
Sbjct: 1012 IVYALTKTGH-DAFNLERLETLGDSYLKFITSLFLYNEFPKHSEGYLTALKGKIIGNRNL 1070

Query: 1122 HKLGTDRKLQGYIRDSAFDP-RRWVAPGQLSLRPVP-----CECGVDTL---EVPLDGKF 1172
            +  G  + + G ++  +F P   ++AP     R V       +   + L   E+P D + 
Sbjct: 1071 YYCGIKKNIPGCMKVDSFIPLSNFIAPAYTVYRQVQDVLLYAKVSPNVLYEIEIPRDEQL 1130

Query: 1173 ---FTQDTKVVV--------------GKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLI 1215
                ++ TK  +              G    +G + +  KT+ADC EALIG Y    G+ 
Sbjct: 1131 CGNISEATKNAIQAKILDWEAAEAQTGMEHYLGIQTVSDKTVADCVEALIGVYLRSMGIK 1190

Query: 1216 AALYMMKWL-----GIDAD--LEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVK 1268
              L +++W       IDA+  L  +  +  I+  ++   +P  +   +IE+K+GY+F  +
Sbjct: 1191 DTLILLQWFQILPHKIDANELLFGTPQNPIISEGNVNHLMPWAS---NIETKLGYQFNNR 1247

Query: 1269 FLLQEAITHASV---QEFYCYQNL 1289
              L +A TH S        CYQ L
Sbjct: 1248 GYLLQAFTHPSYTPNNMTECYQRL 1271



 Score = 44.7 bits (104), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELC 1381
            +  PK LGD+ ES++GA+ +D+  NL  VW I   I+   +      +P  P+R L E  
Sbjct: 1370 VDVPKVLGDIFESVIGAIYLDSNKNLSVVWNIVYSIMHKEIDEFSKNIPKQPIRVLYETH 1429

Query: 1382 DSLGYFVKENCTLKGEMVHAELRLQL 1407
             +   F+K        +V   L++ +
Sbjct: 1430 GARPQFLKATVIENTNIVMVPLKVTI 1455



 Score = 40.8 bits (94), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 23/148 (15%)

Query: 921  YSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV 980
            Y + ++ ++ +  S F     D   T+++Y+ EK+ + + +  QP+L +K      + ++
Sbjct: 777  YIVTQVCDDITPSSCF---PTDHFSTYIHYYKEKHRLEINNLEQPMLEVKSISRAIDYIM 833

Query: 981  NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLML 1040
              +    S K               H+ PEL +R++ P         LPS++ R+  L++
Sbjct: 834  PRDKSTESKKE--------------HLVPELCIRINFPALYWLKATTLPSILHRVSQLLI 879

Query: 1041 ASQLR------EEINCHSRNFHIPSSLI 1062
            A  LR       ++   S N   PS +I
Sbjct: 880  AEDLRYVIAKESDLGTLSNNMKWPSLVI 907


>gi|312384317|gb|EFR29067.1| hypothetical protein AND_02261 [Anopheles darlingi]
          Length = 1651

 Score =  207 bits (526), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 184/646 (28%), Positives = 307/646 (47%), Gaps = 57/646 (8%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN---GFKKLIIFL 99
           + +PR YQ ++ ++  R+NTI  L TGAGKT IA+M++++++  ++SN   G K+   FL
Sbjct: 10  DLVPRDYQQQMKDICLRKNTIVYLPTGAGKTYIALMVMREMSHQLRSNIDDGGKR-SFFL 68

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
           A TV L  QQ         F V  Y     VD W    W  E  +  +LV T QILLD L
Sbjct: 69  ANTVALAKQQAQFFCRFFPFNVRLYTSEVNVDTWKQDRWLNEFREVQILVSTSQILLDIL 128

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN-KPKVFGMTASPVVRKGVSS 218
           R  +LS   +  IV DECH A G HP   IMKE      N +P+V G++ + + R+ + S
Sbjct: 129 RHGYLSPSNINLIVFDECHRAVGQHPMHAIMKELMGVPKNCQPRVIGLSGTLLYRE-LKS 187

Query: 219 AMDCEGQISELESTLDSQVFTIED---KTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275
               E ++  LE+T  + + T+ D    T M  F  +A+E    Y  S F  S    K+ 
Sbjct: 188 KTQVEEELERLENTFSATIATVGDYDEYTSMCSFSTNAQEKICVYRNS-FLESVPVIKMV 246

Query: 276 VSW-SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334
           +    KF   + K+   + +          TLR        ++   L+E    C    V 
Sbjct: 247 IGMVMKFGEQIEKIHLPKYSL-----QSASTLRVSAPKPTKEVKRALNEFQHSCWSSEVY 301

Query: 335 ICLEKVLKAQE-ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393
             L+ V+K      ++ + SS + +  +  +       +  A+K  L F       V   
Sbjct: 302 CVLQSVMKDMPIRVQVMKFSSDRVRRMIMYLEQEYSGTVD-AEKQALVF-------VKRR 353

Query: 394 YISTKLHELLQLFLSFGKSTQVL----CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLT 449
           + +  L+ +L+L+  FG   Q L     I+  E I+    V R +++   + H+ VA   
Sbjct: 354 FSAKVLYHVLRLY--FGHDEQNLPDEDAIVRPEFIVG---VNRPMEES--IEHIIVA--- 403

Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
                      K  ++V++ FR  ++N+L AT+V+EEG+ +  C+ V+ FD P + SSY+
Sbjct: 404 -----------KHDRQVIKKFRKHQINVLCATNVLEEGIDLQMCNIVVMFDEPLSYSSYM 452

Query: 510 QSRGRARQHNSQFILML---ERGNLKQRNKLFDIIRS--ERSVTDTALSR-DPEACFLKA 563
           QS+GRAR  +S ++LM+   +R     R +L+  I +  ++++    ++R +P    ++ 
Sbjct: 453 QSKGRARMKSSTYLLMVNDEDRSKFTARIQLYHDIENTLKKALIGKTINRPEPLEHDVRK 512

Query: 564 CTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELT 623
                  +  +   GA +   SSV L++RYC  +P D +      ++           + 
Sbjct: 513 ELLDDITAPFITPAGAKLDLTSSVQLLNRYCMSMPRDLFTGTNVAWERIEQHGKICVTVK 572

Query: 624 LPSNAPFQTIV-GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
           LP  +  + +V G   +N  L+KQ      C++L++VG L+ HLLP
Sbjct: 573 LPLQSTIREVVHGEPMKNLKLAKQSAAFNVCKQLYEVGELSMHLLP 618



 Score = 73.9 bits (180), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 132/326 (40%), Gaps = 50/326 (15%)

Query: 1054 NFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRS 1113
            N  +  + IL+ALT+    + F++ER ELLGD+ LK++VS  L + +   HEG L+  + 
Sbjct: 1169 NVSLQQADILQALTSKHAHDVFNLERFELLGDAFLKFSVSAFLLMRHVTWHEGYLTTCKG 1228

Query: 1114 WAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVP-LDGKF 1172
              V N  L        L G  +   FDPR    P   ++  V  E  +   E+P L  K 
Sbjct: 1229 RMVSNRNLLYCAMQYGLPGMQKVHRFDPRNEWLPPLATVPKVIREAMIKAKEMPALLFKL 1288

Query: 1173 ----------FTQDTKVVVGKP--------------CDMGHRWMGSKTIADCAEALIGAY 1208
                        Q +K+    P                + H  +  KT+AD  EAL+G  
Sbjct: 1289 ELSEEEVQSGIVQQSKIDAFLPMIKESEEESRSTLMAVLQHVQVSDKTVADSMEALLGVC 1348

Query: 1209 YVGGGLIAALYMMKWLGI---DADLEVSLVDDCITRASLRSYVPRINEI----KDIESKI 1261
                G   +   +   GI   D DL   L     T  + +     I+ +    + IE  +
Sbjct: 1349 VKAVGYERSFRALSHFGIMPRDTDLAKLLRTHEYTVLNYQDERETIDRLLINPEKIERTV 1408

Query: 1262 GYEFTVKFLLQEAITHASVQEFYCYQNL---YKHLQHCSTLLLS-QITEYVKSFPKPGET 1317
            GY+F  +  L +A THA+    Y    L   Y+ L+     +L   IT Y+         
Sbjct: 1409 GYKFRNRTFLLQAFTHAT----YTTNTLTKSYEQLEFLGDAVLDFLITLYI--------- 1455

Query: 1318 TDSGPSMKAPKALGDLLESIVGAVLI 1343
             +  P M +P  L DL  ++V  V +
Sbjct: 1456 FERNPHM-SPGQLTDLRSALVNNVTL 1480



 Score = 41.6 bits (96), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 14/128 (10%)

Query: 921  YSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPG-QPLLRLKQSHNPHNLL 979
            Y +V++    S  SPF        K+F +YFS ++  V++ P  Q L+ +K      NLL
Sbjct: 848  YVVVKVHEELSPLSPFPNGA---YKSFEHYFSAQHQQVIVRPDDQFLIEVKGISTNLNLL 904

Query: 980  V--NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLES 1037
                  DGG +         +++      + PEL+   + P        LLPSV+ R+  
Sbjct: 905  HPGTEQDGGNA--------RSRRRDFQELLIPELVHNFEFPADYWLKATLLPSVLHRVHY 956

Query: 1038 LMLASQLR 1045
            L+++ Q+R
Sbjct: 957  LLISEQIR 964



 Score = 40.4 bits (93), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 1302 SQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILS 1361
            ++I ++V+   +  ET      +  PK LGD+ E+++GA+ +D+  +L   WRI   +L 
Sbjct: 1516 NRIGDWVRLLTEESETP-LAEYVDVPKVLGDVFEALIGAIYLDSGCDLVTTWRICYSLLQ 1574

Query: 1362 PIVTPDKLELP--PLRELIELCDSLGYF 1387
              +    L+ P   +R+L E  D+  +F
Sbjct: 1575 REIENFSLDTPIQVVRQLYEHQDARPHF 1602


>gi|357607884|gb|EHJ65725.1| dicer-2 [Danaus plexippus]
          Length = 1871

 Score =  207 bits (526), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 193/687 (28%), Positives = 321/687 (46%), Gaps = 84/687 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI-KSNGFK-KLIIFLAP 101
            +PR+YQ ++ E+A ++NTI  L TG+GKT IA+ LIK +   + K  GF  K   FL  
Sbjct: 202 ILPRLYQTQLEEIAVKKNTIIFLPTGSGKTHIAISLIKRLRDTLQKPWGFGGKRCFFLVN 261

Query: 102 TVHLVHQQYDVIR----VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
           TV LV QQ   I     VH    V  + G   VD W+   W  E++K  V+VMT QIL D
Sbjct: 262 TVPLVAQQKKTIERSCPVHG---VAGFSGEDNVDYWNKAQWDSELSKYQVIVMTCQILSD 318

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN-KPKVFGMTASPVVRKGV 216
            L   +L L  +  ++ DECHH   +HP   IMK F +   N +P+V G+TA+ ++   V
Sbjct: 319 MLTHQYLQLKDISLLIFDECHHGVEDHPMRLIMKHFLNCPKNEQPRVLGLTAT-LLNSNV 377

Query: 217 SSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS-----DLK 271
                 +  I  LE+T  + + T +D  E+ ++  + +E   +Y +     +     DL 
Sbjct: 378 -KLNKIQETIRHLETTFQASIATADDMGEVAMYSTNPREQLLYYRRPSATPAASEAVDLL 436

Query: 272 GKLEVSWSKFDASLSKLQGSQLNC---YKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
            +L+    +F+   + +Q   +      +D+    K + K + +    ++  + +LG+  
Sbjct: 437 RRLQQIVLQFELP-NTVQKHDIELEPHQRDITGDPKKIIKAVKNMIESMILSICDLGV-- 493

Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIG-SALPLADKIFLDFGFD-- 385
            Y      L  ++  +      R +S Q    +EE+L+ +  +A   A  + LD   +  
Sbjct: 494 -YVGALGLLANIVALERR---KRWASSQ----VEELLYTVTITAAVEARSVLLDSMKNES 545

Query: 386 -YSKAVDLGYISTKLHELLQLFLSFGKSTQV------------LC-IIFVERIIAAKVVE 431
            Y K +   + S K  +LL +   +   T V            LC +I  ++   AK++ 
Sbjct: 546 GYEKII--RHSSEKTVQLLNILKEYNPRTPVRRALKVNQERNALCGLILTQQRFTAKILY 603

Query: 432 RFVKKVP--------FLTHLTVAYLTGS---TTSVDALTPKVQKEVLESFRGGKVNLLFA 480
             +K V         FL H  +     S   +T       K+ ++ L  F+ G +N L A
Sbjct: 604 NLLKDVAEVNKEEFGFLKHDFIVGFNISPLCSTREQHYNKKISEQALLKFKNGDLNCLIA 663

Query: 481 TDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDI 540
           T V+EEG+ VP C+ V+R+D+P    SYIQS+GRAR   + F+++++  N ++ N  +  
Sbjct: 664 TSVVEEGLDVPQCTLVLRYDVPLEYRSYIQSKGRARNKKANFVILVDEENRQKFNSQYRA 723

Query: 541 IRSERSVTDTAL-----SRDPEACFLKA-------CTYVKTKSYIVESTGASVTTDSSVN 588
            +   S  +  L        P    +K            KT++      G S+   S+++
Sbjct: 724 FQQVESYLNGMLCGGEVRNTPSEAEVKENLNDDDCIPAYKTRN------GNSLFAVSAIS 777

Query: 589 LIHRYCEMLPSDKYYTPKPIFKYKSAE-EAYECELTLPSNAPFQTIVG--PTSRNKNLSK 645
           L++RYC +LP D+Y T  P+   + A+       + +P   P +  V   P S  KN +K
Sbjct: 778 LLNRYCSVLPHDQYTTILPMVIQEPAQGNKTMVTIIMPIACPIKEPVQGRPMSSVKN-AK 836

Query: 646 QLVCLEACEKLHQVGALN-DHLLPSVE 671
           +   L  C KLH+ G L+ + LLP V+
Sbjct: 837 RSAALNVCIKLHKAGELDYETLLPKVK 863



 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 142/303 (46%), Gaps = 46/303 (15%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            +L ALT +   ++F++ER E LGDS LK+A S +LF  +P+  EGQL+  +S  + N  L
Sbjct: 1384 VLSALTLIKSNDTFNLERSETLGDSFLKFAASLYLFHKFPQMDEGQLTNLKSRLIGNRNL 1443

Query: 1122 HKLGTDRKLQGYIRDSAFDPRR------WVAPGQL-------SLRPV-------PCECGV 1161
            +  G    L G ++   F PR       ++AP +L        +RP        P E  +
Sbjct: 1444 YYAGERAGLAGRMKVEQFSPRSDFLVPGFLAPSELVSFITRRKIRPTFLIGVQFPVEDAL 1503

Query: 1162 DTLEVPLDGKFFTQDTK-------VVVGKPCDMGHRWMGS-----KTIADCAEALIGAYY 1209
                 P       +  K          GK  +   R++G+     K++ADC EALIG Y 
Sbjct: 1504 SGNLSPESRSLLQEKLKDSDLAEEEPFGKAQNAMQRYVGAQAVSDKSVADCVEALIGTYL 1563

Query: 1210 VGGGLIAALYMMKWLGIDADLEVSL------VDDCIT--RASLRSYVPRINEIK-DIESK 1260
            + GG+  A+ +++W  I    +  L      V+  I+  +A+++     +N  + DIE+ 
Sbjct: 1564 LSGGITDAVSILEWFKIIPSEDKFLSFLTKKVNTVISEGKATVQEVDWLLNSCRSDIETI 1623

Query: 1261 IGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLS-QITEYVKSF---PKPGE 1316
            +GY+F    LL EA++HAS      Y   Y+ L+     +L   IT Y+        PG+
Sbjct: 1624 LGYKFKDPSLLLEALSHASYIRNR-YTRSYERLEFLGDAILDFLITAYIYENCGDLSPGD 1682

Query: 1317 TTD 1319
             TD
Sbjct: 1683 LTD 1685



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 7/122 (5%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGI-VLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGSGK 990
            +P+    D+  +TF +Y+S KY + +L    QPLL ++   +  N L+       G S K
Sbjct: 1098 TPYSKFEDNSFETFADYYSNKYNLEILGRKDQPLLEVRNISSRMNCLLPRAATIRGLSDK 1157

Query: 991  GSKSG---MNTKKPQMHVHM-PPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLRE 1046
              +         KP+    +  PE  VR D P  +     +LPS++ R+  L++A +LR 
Sbjct: 1158 QRRLASLAHGDYKPREFTELFVPEYCVRADYPAHLWYKAIILPSIVHRVTMLLIAEELRV 1217

Query: 1047 EI 1048
            +I
Sbjct: 1218 QI 1219



 Score = 41.6 bits (96), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELC 1381
            +  PKAL D+ ES+ GA+ +D+  +L  VW++   I+   +    +++P  P+R L+E+ 
Sbjct: 1754 IDVPKALSDIFESLTGAMFLDSGGDLKLVWKVIYRIMHKEIHDFSMKVPKQPVRVLMEMI 1813

Query: 1382 DSLGYFVKENCT 1393
             +   F K   T
Sbjct: 1814 HACPSFGKSRAT 1825


>gi|449485333|ref|XP_004157136.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Cucumis sativus]
          Length = 276

 Score =  206 bits (525), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 100/220 (45%), Positives = 146/220 (66%), Gaps = 8/220 (3%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI-KSNGFKKLIIFLAPTVHL 105
           R YQL+  E A ++NT+  LETG+GKT+IA+ML++  A  + K + F  + +FL P V L
Sbjct: 21  RSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQLRKPSPF--VAVFLVPQVVL 78

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V QQ + +++H+D  V  YYG  GVD WD   W++EI K++VLVMTP ILL+ LR +F  
Sbjct: 79  VTQQAEALKMHSDLSVGLYYGDMGVDFWDGAIWKREIEKHEVLVMTPAILLNGLRHSFFR 138

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-----DNKPKVFGMTASPVVRKGVSSAM 220
           L ++  +++DECHHA G HPY  IM EFYH+       + P++FGMTASP+  KG +S +
Sbjct: 139 LSMIKVLILDECHHARGKHPYACIMTEFYHQQLSLGKSDLPRIFGMTASPIKSKGGNSEL 198

Query: 221 DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY 260
           +    I ELES L+S+V+T+  ++E+  FVP +    +FY
Sbjct: 199 NYWQYIQELESLLNSKVYTVSSESELANFVPISTPKFKFY 238


>gi|238497846|ref|XP_002380158.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357]
 gi|220693432|gb|EED49777.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357]
          Length = 1339

 Score =  206 bits (525), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 192/673 (28%), Positives = 305/673 (45%), Gaps = 63/673 (9%)

Query: 37  SSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLI 96
           S+   + + PR YQ ++FE + + N I  ++TG GKT IA++    IA  ++  G +KL 
Sbjct: 7   SNGTGLLYKPRQYQYEMFEASLKENIIVAMDTGTGKTQIALL---RIAHQLEGGGPQKLT 63

Query: 97  IFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQI 154
            FL PTV L  QQY+VIR H          G   V+ W SQ  W + +    V+V T  +
Sbjct: 64  WFLTPTVALCLQQYEVIRSHLPAVRACTITGLDKVERWKSQYIWDELLKDKQVVVSTHAV 123

Query: 155 LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS------DNKPKVFGMTA 208
           L +AL   F+ +  +  ++ DE HH    HP   IM +FYH +      D+ P + G+TA
Sbjct: 124 LFEALTHGFVRISQLGLLIFDEAHHCMRRHPANMIMLDFYHPTLRKHGRDSVPCILGLTA 183

Query: 209 SPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQ-SKFC 266
           SPVVR           ++  LES LDS   T +  K E+  +    +     Y    +  
Sbjct: 184 SPVVRSK-------SQEMKTLESNLDSICKTPQVHKQELTTYAHRPELLPIIYKAIDEGP 236

Query: 267 GSDLKGKLEVSWSKF----DASLSKLQGSQLNC---YKDMDDKHKTLRKQLSDYHAKILY 319
           G      LE +W       D       GS LN    YK +  +     +Q+  +  +  +
Sbjct: 237 GGRALQALEHAWDTADIDGDPDAIPQNGSLLNGSGEYKALMVRKTLCNEQIKRFVDRSRH 296

Query: 320 CLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIG--SALPLAD- 376
              ELG   A   +   +E++          R  SL   +  EE  ++    S LP+A+ 
Sbjct: 297 IFAELGEWAADYYICTSVEQLRTT------IRDQSLTMDWEDEERAYLSNFLSKLPVAEV 350

Query: 377 KIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436
           +  L    +++       +S KL  L+  FL      +   +IFV++ +   V+ R +  
Sbjct: 351 QANLADPNNFT-------MSPKLAALIN-FLDKFDDPEFSGLIFVKQRVTVSVLARLLSL 402

Query: 437 VP-----FLTHLTVAYLTGSTTSV---DALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488
            P     F     V    GS       D    K Q+  ++ FR G+ NL+  T V+EEG+
Sbjct: 403 HPQTRDRFRCAAYVGMSVGSCRQDMVGDWHNAKKQRGTMDDFRSGRKNLIVTTSVLEEGI 462

Query: 489 HVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML----ERGNLKQRNKLFDIIRSE 544
            V  C  V+ FD P  + S+IQ RGRARQ  S + +M     E G+L+ R ++ +    E
Sbjct: 463 DVTACRVVVCFDKPANLKSFIQRRGRARQQKSTYAIMFSTADEHGDLR-RWQILEQAMVE 521

Query: 545 RSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYT 604
               +    R+ EA   +A      +   VE+TGA +T DS V  ++ +C +LP ++Y  
Sbjct: 522 AYQDEERRLREAEA--QEAVDENVPEMITVEATGAVITPDSVVTHLYHFCAVLPEERYVD 579

Query: 605 PKPIFKY-KSAEEAYECELTLPS--NAPFQTIVGPT-SRNKNLSKQLVCLEACEKLHQVG 660
            +P F + K  +   +  + LPS  +   + I G    +++  + +    +A   L++ G
Sbjct: 580 NRPEFSFEKDRQGLIKGTVILPSCVHPKVRRIQGKLWWKSERAAVKETAFQAYRALYEFG 639

Query: 661 ALNDHLLPSVEEP 673
            LNDHLLP  + P
Sbjct: 640 LLNDHLLPLTKNP 652



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 91/210 (43%), Gaps = 33/210 (15%)

Query: 1005 VHMPPELLVRVD-VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLIL 1063
            VHM       VD +P+S       +P ++ RLES ++A++L   I C      I    ++
Sbjct: 875  VHMVAAESCTVDKLPVSTAIFGLFIPHIVDRLESTLIANRLCATILCDVGFADIQH--VI 932

Query: 1064 EALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHK 1123
             A+         + +R E LGDS+LKY VSC LF       EG L+  R+  V N  L +
Sbjct: 933  TAIMAPSAQGVTNYQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRTTIVQNPRLTR 992

Query: 1124 LGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGK 1183
               D  L  +I   A  PRRW+AP  +S R                          V   
Sbjct: 993  AALDAGLDSFIITKALTPRRWIAP-LISTR--------------------------VGAA 1025

Query: 1184 PCDMGHRWMGSKTIADCAEALIGAYYVGGG 1213
            P     R M +K +AD  EALIGA Y+ GG
Sbjct: 1026 PV---KRQMSAKVLADVIEALIGAAYLDGG 1052


>gi|302815180|ref|XP_002989272.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
 gi|300143015|gb|EFJ09710.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
          Length = 524

 Score =  206 bits (525), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 175/639 (27%), Positives = 275/639 (43%), Gaps = 187/639 (29%)

Query: 1021 VVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERL 1080
            V K    LP +  R+E +M A QLR+ IN     ++IP+S ILEALT   C E +  ER+
Sbjct: 8    VSKGTEKLPHLRNRVERMMQAIQLRKAIN-----YNIPASKILEALTAANCHEPYCYERI 62

Query: 1081 ELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFD 1140
            ELLGD+ LK+AVS  L+L +    EG+L+  R   + NS LH L  ++ L+ Y+R + F 
Sbjct: 63   ELLGDAYLKWAVSTRLYLKFSDFPEGELTITRGKIISNSALHYLALEKGLETYVRINPFV 122

Query: 1141 PRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADC 1200
            P R                                       +P D+  + + SK +A+ 
Sbjct: 123  PGR---------------------------------------EPTDL--QELSSKVLANV 141

Query: 1201 AEALIGAYYVGGGLIAALYMMKWLGI-----DADLEVSLVDDCITRASLRSYVPRINEIK 1255
             EALIGAYYV  G   A ++++WLGI     DA+L+++     ++   L S      + +
Sbjct: 142  VEALIGAYYVHHGDKGARHVVEWLGIETGFSDAELQIARAGSVVSPEVLNSI-----DFE 196

Query: 1256 DIESKIGYEFTVKFLLQEAITHASVQE--------------------------FYCYQNL 1289
             +E+ +GY F  + LL +A+TH+S ++                          ++ Y++L
Sbjct: 197  GLENTLGYSFGSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTRHIYFSYKDL 256

Query: 1290 Y---------------------------KHLQHCSTLLLSQITEYVKSFPKPGET---TD 1319
            +                            H+ H S    SQI  Y K      E    + 
Sbjct: 257  HPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAKHALNMEENAIYSY 316

Query: 1320 SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIE 1379
               ++KAPK LGD+ +S+VGA+ ID+ LNLD+VW++F+P+L P+VTP+ + + P+REL E
Sbjct: 317  GFGAVKAPKVLGDVFQSLVGALYIDSGLNLDQVWKVFEPLLQPLVTPEAVPIHPVRELYE 376

Query: 1380 LCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVC 1439
            LCD     ++ + +L G++  A   +  K   ++G G    +K AK  AA   + KL+  
Sbjct: 377  LCDKHMKKLEWDYSLSGDLFLARALVGNK---VLGRGTNVQKKMAKKLAAINAIAKLD-- 431

Query: 1440 EKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPV 1499
                 K AS                 P  PS + +   E +                   
Sbjct: 432  -----KSAS-----------------PLTPSQEEKTSGEFS------------------- 450

Query: 1500 VAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSS---FVS 1556
                       R +L +LC    WP P + T                  TG +    F  
Sbjct: 451  -----------RQALHELCSQRGWPCPDYNT---------------HSETGPAHAKMFTC 484

Query: 1557 KITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELER 1595
              ++ I +    EC G PR     + DSAA +++  L++
Sbjct: 485  TASVRIEQGEKQECIGQPRPTINKAKDSAARMLMETLQK 523


>gi|403419584|emb|CCM06284.1| predicted protein [Fibroporia radiculosa]
          Length = 1482

 Score =  206 bits (524), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 195/714 (27%), Positives = 319/714 (44%), Gaps = 105/714 (14%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ ++ + + R N +  L+TG+GKT IAV+ +K  ++        K+  FLAPTV LV
Sbjct: 18  RGYQQEMLDESLRMNLVIALDTGSGKTHIAVLRMKLESE----RELSKVSWFLAPTVALV 73

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            QQ +VI+      V    GA    +W D + W+  ++ + V+V TPQILLDAL   ++ 
Sbjct: 74  EQQSEVIKSAIPVSVTAISGASEPKQWIDPKLWRSVLDTHRVIVSTPQILLDALHHGYID 133

Query: 166 LDI-VCFIVIDECHHATGNHPYTKIMKEFYH-----------KSDNKPKVFGMTASPVVR 213
           L   +  ++ DE HHA   HPY  IM+ FY                +P V G+TASP+  
Sbjct: 134 LGRDIGLLIFDEAHHAMSKHPYNMIMQNFYFSLPPRSECVNTNGRMRPMVLGLTASPIYG 193

Query: 214 KGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCGSD--- 269
             V ++         LE  LDS + +    + E+  +V        FYD   +   +   
Sbjct: 194 GNVDASFHA------LERNLDSTIRSSRMHREELAQYVHRPVFKHIFYDCPPYLEDEIPS 247

Query: 270 -----LKGKLEVSWSKFDASLSKLQGSQL------NCYKDMDDK-HKTLRKQLSDYHAKI 317
                L+  +++   + D  +  L+ +QL      + ++ +D +  KT+RK+ +  H  +
Sbjct: 248 ANYQALQSVVDLMKIEDDPYVKSLR-NQLKRANPGDEWRRIDQQLSKTIRKEDTFCHKGL 306

Query: 318 ---LYCLDELGL-ICAYEAVKICLEKVLKAQEECEIYRQ-----SSLQCKYFLEEVLHVI 368
                   ++GL +  + A    LE + +AQ   + Y        + + +Y L+ +  V 
Sbjct: 307 RDFARAAQDIGLELGPWAADWYVLEVIEQAQRAADPYNNIMASWGNTEKRYLLDTLAKVK 366

Query: 369 GSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGK-----STQVLCIIFVER 423
              +P  +                  +S+K+  L    ++  K     +     ++FV R
Sbjct: 367 PIKVPFDENAL------------FSGLSSKVWTLANCLVAEEKEFRSQNESYSGLVFVTR 414

Query: 424 IIAAKVVERFVKKVPFLTHL-TVAYLTGSTTSVD---------ALTPKVQKEVLESFRGG 473
                 +   ++++P    L  +  L GS++S            L      + L  FR G
Sbjct: 415 RDTVLALAEVLRRLPQTGQLFRIGCLVGSSSSFSRHAFLDITRQLVIDSHLDTLAEFRSG 474

Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQ 533
           + NL+ +T V EEG+ +  C  VIRFDLP    S+ QSRGRAR+  S F+LM E G  +Q
Sbjct: 475 EKNLIISTSVAEEGIDIQACGSVIRFDLPPNTVSWAQSRGRARKSRSSFVLMFENGA-EQ 533

Query: 534 RNKLFDIIRSERSVTDTALSRDPE----ACFLKACTYVKTKSYIVESTGASVTTDSSVNL 589
           R K+ +  ++E  +    L  DP     A F +         Y+V STGA +T  S+ + 
Sbjct: 534 RQKVEEWEQTEYKM--MTLYNDPNRISGAVFEEDDDEEVDLQYVVPSTGAILTLHSATSH 591

Query: 590 IHRYCEMLPSDKY----YTPKPI-----FKYKSAEE--------AYECELTLPSNAP--F 630
           ++ +C +LP+  Y    Y   P      +  K  EE         +   +TLP   P   
Sbjct: 592 LNHFCAVLPNSAYQYAAYDLDPPDFPEDWHSKQDEEKGIPVYQGPWGATITLPRALPKHL 651

Query: 631 QTIVGPTS-RNKNLSKQLVCLEACEKLHQVGALNDHLLP--SVEEPSENNLISK 681
           +T   P   R K  +++ V  +A  +LH+ G LNDHLLP  S  EP +   + +
Sbjct: 652 RTFTTPREHRTKRSAQRHVAFQAYVELHKAGLLNDHLLPLTSAMEPDQGEEVKQ 705



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 159/349 (45%), Gaps = 37/349 (10%)

Query: 1028 LPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSV 1087
            LPSV++ L +++    LRE +   S     P SL+  A+T     E  + +RLE LGD+V
Sbjct: 973  LPSVLRALANVLTVVSLRETLLAGSPVSQAPFSLLTTAVTAPVSQELSNYQRLETLGDTV 1032

Query: 1088 LKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAP 1147
            LKY  +  LF  +P  HEG L+ R+  AV N  L K    ++L  +I    F PR+W  P
Sbjct: 1033 LKYVTTIQLFADHPLWHEGYLARRKDHAVSNIQLAKQAISKRLYQWIIRDRFVPRKW-RP 1091

Query: 1148 GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGA 1207
              ++   V      +T  +PLD K   + T+             + +K +AD  E+LIGA
Sbjct: 1092 HYITDVDVQNVSTEET--IPLDDK--KKKTQA------------LSTKVLADVVESLIGA 1135

Query: 1208 YYVGGGLIAAL-------YMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESK 1260
             Y  GG   A+         + W  I   +E  L    IT   L +  P   ++  +E  
Sbjct: 1136 AYEHGGFDLAVDCTSIFGMGLTWKKIPVHIENIL---AITE-ELENPPP---QLALVERM 1188

Query: 1261 IGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQI-TEYVKSFPKPGETTD 1319
            IGY+F+ K LL +A+THAS        + Y+ L+      L  I T+++  +  PG+   
Sbjct: 1189 IGYQFSRKALLVQALTHASYHGDTASMS-YERLEFLGDSALDMIVTDFL--YHAPGKNYK 1245

Query: 1320 SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDK 1368
             G      +AL +     +  + + T  ++D +   + P      TPD+
Sbjct: 1246 PGHMHIRKEALVN--SHFLAFICLRTHTDVDGISHRWTPAEGVTTTPDR 1292


>gi|403171531|ref|XP_003330752.2| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|375169221|gb|EFP86333.2| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1403

 Score =  206 bits (523), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 189/692 (27%), Positives = 310/692 (44%), Gaps = 97/692 (14%)

Query: 23  MGSSG-HDHAVDGPSSSTNSINF--IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVML 79
           MG +  H  +VD   SS +      IPR+YQ ++ E AK+RN I   +TG GKT++A+ L
Sbjct: 1   MGDNDDHPRSVDAEDSSVDVKESLKIPRLYQAELLEEAKKRNIIIRADTGTGKTLVALHL 60

Query: 80  IKDIAQAIKS--NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137
           I   A   +S  NG  ++  FL PT  LVHQQ + I+  +   V+ Y G    D W+   
Sbjct: 61  IVWTAAQTESAPNG-HQIQAFLVPTRPLVHQQAEYIQSQSTLRVKAYAGDLPADLWNVDK 119

Query: 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK- 196
           W+  + + DV+V T QI  D + K F   + +  ++ DE HH   +H Y +IM+  YH+ 
Sbjct: 120 WRSGLKEVDVIVSTAQIFHDLISKGFWKFEDISLLIFDEAHHCRKDHVYNQIMRSHYHRL 179

Query: 197 ----SDNKPKVFGMTASPVVR-KGVSSAMDCEGQISELESTLDSQVFTIEDKTE---MEV 248
               +   PK+ G+TASP+   K +  A   E  I +L+ +L +Q+  ++  TE      
Sbjct: 180 AKDPAQRLPKILGLTASPIWNYKDLERA---EKDIKDLQCSLAAQICEVKRHTEDVSQHN 236

Query: 249 FVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRK 308
           F P+  E   ++D S                    +  KL         D+  KH +L K
Sbjct: 237 FKPN--ERAVYFDPS-------------------PAFQKLSHPPWEQINDLLTKHASL-K 274

Query: 309 QLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI---------YRQSSLQCKY 359
            ++ + +  L    ELG      ++   L+ +L      ++         ++Q   Q   
Sbjct: 275 LITTFESVFL----ELGNYAYSLSILDWLKSLLVVGGPNQLMSGRLLDPNHQQKVKQVTN 330

Query: 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKS---TQVL 416
            LEE+L +                      +    +S+K+  L +L + + +       L
Sbjct: 331 QLEELLSI--------------------NDIPENQLSSKVIALNKLLVKYKEEDGRDDFL 370

Query: 417 CIIFVER----IIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKV----QKEVLE 468
           CI+FVER     +   ++ER  +   F+    +A   G   + D L  K+    Q + + 
Sbjct: 371 CIVFVERRQHTQLLFALLERNTQLKGFIRPGALAGHGGGNEN-DLLGIKMDSRAQNKTVA 429

Query: 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528
            FR G+ NL  AT V EEG+   +C  VIRFD   T   YIQSRGRAR  NS +I+ML  
Sbjct: 430 KFRTGEHNLTIATSVAEEGLDFRSCRVVIRFDQITTWKGYIQSRGRARARNSDYIVMLPT 489

Query: 529 GNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYI---VESTGASVTTDS 585
            +  +    +     +      AL   P+   +       T   I    +   + +T  S
Sbjct: 490 DSSSK----YLAFSGKEDELKAALYDRPDNELIGGGAVEPTPQLICRLADGNDSILTYGS 545

Query: 586 SVNLIHRYCEMLPSDKYY-TPKPIFKYKSAEEAYECELTLPSNAPF----QTIVGPTSRN 640
           +  L++  C+++P D++     P ++     E+++ ++TLP  A      +T +G     
Sbjct: 546 APGLLNDVCQLIPQDEFLPVLAPEYEIMCLGESFKSQVTLPPMAALPSSQRTFMGLEMST 605

Query: 641 KNLSKQLVCLEACEKLHQVGALNDHLLPSVEE 672
           K  +K+    EAC+ L ++G LN+H LP  E+
Sbjct: 606 KKEAKRSAAFEACKVLRELGVLNEHFLPHRED 637



 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 176/431 (40%), Gaps = 75/431 (17%)

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            +P +L     +P S+ K    LPS+ + L   + A  L + ++  +    +P  +   AL
Sbjct: 889  LPLKLCQGSRIPRSLWKVFSYLPSLTRLLHDALQAKFLFKRLDFPA--ISLPHGI--HAL 944

Query: 1067 TTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
            T  G    +  + LE +GD+ LK A S H+++++ +K EG +S  R+ ++ N+ L +   
Sbjct: 945  TPPGVGVPWDYQTLETVGDAFLKLATSVHVYISHLRKGEGDMSHVRARSIDNAYLRRKAV 1004

Query: 1127 DRKLQGYI----------RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQD 1176
               L G I          RD+  +  + +A G  S R +P     D +E  L     T  
Sbjct: 1005 QANLPGSILSQRFRTGKFRDAQTEEGKELANGNFS-RKIPRRVLSDVVEALLGAGLLTGG 1063

Query: 1177 TK--VVVGKPCDM--------------------GHRWMGSKTIADCAEALIGAYYVGGG- 1213
             +  + VG   D+                     H  +    +  C +      YV    
Sbjct: 1064 IELGLKVGTALDLCFGGISPWSQRTLTISFGKDAHDKLDPSMLLTCEQIERKINYVFKEK 1123

Query: 1214 --LIAALYMM-------------KWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIE 1258
              L+ AL                +WLG DA +++ +V+    R    +     +E+    
Sbjct: 1124 LFLVQALTHRSANSFLTNCYEREEWLG-DAVIDMWIVEHAYKRFDNAT----ADELSLAR 1178

Query: 1259 SKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETT 1318
            +K+    ++ FL   AI    + EF  +++   H Q C     ++  E ++ F K  E  
Sbjct: 1179 AKVACNGSLGFL---AIKKLGLHEFIMHKSDNFH-QAC-----AEAIEAIEPFTKISEFF 1229

Query: 1319 DSGPSM----KAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP-- 1372
             +  ++      PK L D LE+IVGAV +D+ LNL   +R+   I    VTP    L   
Sbjct: 1230 SNINNLFVVFDPPKILNDALEAIVGAVFVDSGLNLPTAYRVLDVIFED-VTPSLSRLAAR 1288

Query: 1373 -PLRELIELCD 1382
             P+  L+ L D
Sbjct: 1289 DPVSTLLRLRD 1299


>gi|393246694|gb|EJD54202.1| P-loop containing nucleoside triphosphate hydrolase protein
           [Auricularia delicata TFB-10046 SS5]
          Length = 1453

 Score =  205 bits (522), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 231/871 (26%), Positives = 373/871 (42%), Gaps = 129/871 (14%)

Query: 31  AVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN 90
           A D P   T       R YQ ++   + +RN I VLETG+GKT IAV+ ++   +   + 
Sbjct: 2   AEDAPERET-------RKYQEEMLNESLKRNIIIVLETGSGKTHIAVLRLRLEVERQAAL 54

Query: 91  GFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS-QCWQKEINKNDVLV 149
           G  K   FL PTV L  QQ+ V+       V    GA   D+W S   W++ ++ N V+V
Sbjct: 55  GTNKASWFLVPTVALCQQQHRVLERELPCSVGLISGALQPDKWTSASVWKQVVSVNQVVV 114

Query: 150 MTPQILLDALRKAFLSLDI-VCFIVIDECHHATGNHPYTKIMKEFYH--KSDNKPKVFGM 206
            TPQ+LLDALR A+L L   V  ++ DE HHA   HPY +IM+EFY   + D+KP + G+
Sbjct: 115 STPQVLLDALRHAYLDLGRDVGLLIFDEAHHALRGHPYNRIMREFYDPLQPDDKPFIMGL 174

Query: 207 TASPVVRKGVSSAMDCEGQIS-ELESTLDSQVF------TIEDKTEMEVFVPSAKESCRF 259
           TASP+    +   + C    + E E  L + VF       I D         S +     
Sbjct: 175 TASPLNVDTLEQNLLCRALTTRENEEELRAHVFPPTLKHVIYDHRPRHEQPESLQSLSTV 234

Query: 260 YD----QSKFCGSDLKGKLEVSWS-KFDASLSKLQGSQL--NCYKDMDDKHKTLRKQLSD 312
           Y+    +       L+  L+       DA   + Q ++L     K     H+TL+K L  
Sbjct: 235 YEDLDIEDDPSVRHLRHALQTPHDGPVDAVERERQEARLAKAVRKRNTVTHETLKKLLK- 293

Query: 313 YHAKILYCLDELGLICAYEAVKICLEKV---LKAQEECEIY--RQSSLQCKYFLEEVLHV 367
                L    ELG   A   V   ++K+   + A +E   +  ++++ + +Y L ++L  
Sbjct: 294 ---SALDTFYELGPWAADWFVADSVDKLRRPIDASQEFSFFNSKRTTEETRY-LRDILGS 349

Query: 368 IGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQV-----LCIIFVE 422
           +  A P  +   +  G            + +   L+ L +   ++ +        IIFV 
Sbjct: 350 VRVARPSLEPDVVAAG-----------TAPQTQALVDLLVDEKRAAEASGDIYSGIIFVT 398

Query: 423 RIIAAKVVERFVKKVPFLTH-LTVAYLTGSTTS------VDAL---TPKVQKEVLESFRG 472
              A+ ++ + +   P       V YL G +        +D L     K Q+E L+ F  
Sbjct: 399 LRTASLLLSKVISAHPKTRDAFHVGYLVGWSNDERRRNVLDLLVGGNDKAQEETLKDFAE 458

Query: 473 GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK 532
           G++NLL AT V+EEG+ V  C+ VIRF+    ++S++QSRGRAR+  S F++M       
Sbjct: 459 GRLNLLIATSVLEEGLDVARCNCVIRFNPANNITSWVQSRGRARRERSSFVVMFSDIQDG 518

Query: 533 QRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS---------YIVESTGASVTT 583
           Q          E+ +  TAL R+  A + +A       +         + VE TGA +T 
Sbjct: 519 Q----------EQMLRWTALEREMNAKYKEAMRERAVGAPQREEHQHYFKVEETGALLTL 568

Query: 584 DSSVNLIHRYCEMLPSDKYYTPKPIFK-------------------YKSAEEAYECELTL 624
           D++   I  +C+ LP   Y    PI+                     K   + + C LTL
Sbjct: 569 DNATAHISHFCDKLPHSAYARMVPIYDIFPPDGFMEPLAPGQALPALKEESKLFGCTLTL 628

Query: 625 PSNAPFQTIVGPTSR---------NKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSE 675
           P+      +V P  R         ++  +K+ V  EA +KL   G +N +LLP    P +
Sbjct: 629 PN------VVSPALRKHVTPMVHPSEKAAKRQVAFEAYQKLFNAGLVNPNLLPL--RPDD 680

Query: 676 NNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYS 735
           +  + K  + +      KR+ L    P       W     V+    +  +  S++     
Sbjct: 681 DPELKKMKDPM-----QKREALAVVDP---QMDAWALTDDVL---GEEEYWSSLIEVDGV 729

Query: 736 GFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLF 795
           G   ++ S+++  +   E  LY       A V ++G++ L  DQ+  A+      +  LF
Sbjct: 730 GAAQML-SKVEPPLPYAEHTLYERDVPRSAVVRATGRISLTHDQLRVARAGTRQLWWSLF 788

Query: 796 GKLFVKSKSSGSREFFLKRET-NSLWSPSYM 825
           G      ++  +  F   RE   + W P +M
Sbjct: 789 GSHMTWDRTDFTHLFIFPREQPGTSWRPEWM 819



 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 129/278 (46%), Gaps = 31/278 (11%)

Query: 1014 RVDVPISVVKSLYL-LPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCC 1072
            RVD+    +  L + LPS+++ ++S +L   L   +        +P   +  A+TT    
Sbjct: 926  RVDILAPAMARLSMFLPSILRDMQSAILGRDLHRHLFTTGLLSVVPLLDVRTAITTPLTG 985

Query: 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQG 1132
            ++++ +R+E LGD VLK+  S  L   +P+ HEG L+ ++   V NS L +     KL  
Sbjct: 986  DAYNYQRVETLGDCVLKFLTSVQLLDMHPEWHEGYLTMKKDHIVSNSNLAREAKRNKLAL 1045

Query: 1133 YIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWM 1192
            +I       ++W  P  L+  P          +  +D    T+D      K  D     +
Sbjct: 1046 WIIRDRMVAKKW-QPQYLTALP----------DTSMDVDPPTEDPP---AKEKDENVPRL 1091

Query: 1193 GSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI--DADLEVSLVDDCITRASLRSYVPR 1250
             +K +AD  E+LIG  +  GG  AA+ M++ LGI    +LE   V D +      S V R
Sbjct: 1092 STKVLADVVESLIGVAHENGGYDAAVDMLRRLGIGQSMELEWKTVADRV-----HSIVNR 1146

Query: 1251 I---------NEIKDIESKIGYEFTVKFLLQEAITHAS 1279
            I         + ++ +E  +G+ F    LL EA+THA+
Sbjct: 1147 IEPLPHGYPEDYVRTLEQMLGHRFEHPSLLFEALTHAN 1184


>gi|268576156|ref|XP_002643058.1| C. briggsae CBR-DCR-1 protein [Caenorhabditis briggsae]
          Length = 1863

 Score =  205 bits (521), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 272/1099 (24%), Positives = 456/1099 (41%), Gaps = 233/1099 (21%)

Query: 44   FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS---NGFKKLIIFLA 100
            F PR YQ+++ + A ++NTI  L TG+GKT IAV+L+K+    + +   NG K+   F+ 
Sbjct: 11   FNPRDYQVELLDKASKKNTIVQLGTGSGKTFIAVLLLKEYGVQMFAPLENGGKR-AFFVV 69

Query: 101  PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS-QCWQKEINKNDVLVMTPQILLDAL 159
              V+LV QQ   I VHT F+V + +G    + W S +   + + +N V+V+T Q LLD +
Sbjct: 70   EKVNLVEQQAAHIEVHTSFKVGQVHGQTSNELWKSTETCDEFMRQNHVVVITAQCLLDLI 129

Query: 160  RKAFLSLDIVCFIVIDECHHATGN-HPYTKIM---KEFYHKSDNKPKVFGMTASPVVRKG 215
              A++ L   C ++ DECHHA G+ HPY  IM   KE        P+V G+TAS +  K 
Sbjct: 130  NHAYVRLQDTCVLIFDECHHALGSKHPYRLIMSKYKELKKAGMPVPRVLGLTASLIKEKV 189

Query: 216  VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275
                +    Q+++LE+ LDS + T  D       V  +K   R ++    C +    +L 
Sbjct: 190  APDKLS--EQLNKLENVLDSVIETASD------LVSLSKYGARPFEAIILCRNFEADQLR 241

Query: 276  VSWSKFDASLSKLQGSQLN----CYKDMD-DKHKTLRKQLSDYHAKILYCLDELGLICAY 330
            +   +    L K     +N     + D+D D  +++R  L    A     L +LG   A+
Sbjct: 242  LRNYETIRDLLKDTEDFVNQTSVFHPDLDLDPRRSIRDSLKTTKA----VLRQLGPWAAW 297

Query: 331  EAVKICLEKVL-----------KAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLAD-KI 378
            +  ++  EK L           KA     + R + +  K  LE  +  + S   LAD + 
Sbjct: 298  KTTQMW-EKELSKLTKTNILPEKALTFLNLARTTMITIKRLLEPEMREVRS---LADLQK 353

Query: 379  FLDFGFDYSKAVDLGYISTKLHELLQLF--------LSFGKSTQVLCIIFVERIIAAKVV 430
            F+   F             ++ E+L++F        L   K   +  IIFV++   A  +
Sbjct: 354  FVPHRF------------VRIFEILEMFQPGFQTERLRKEKPENLSAIIFVDQRYIAYSL 401

Query: 431  ERFVKKV----PFLTHLTVAYLTGST-----TSVDALTPKVQKEVLESFRGGKVNLLFAT 481
               +K +    P    L   Y+ G++      S +    K Q + L  F   ++N+L AT
Sbjct: 402  HIMIKAIRSWEPKFKFLNSDYVVGASGQNLANSDNQGLHKRQTDTLRRFHKSEINVLIAT 461

Query: 482  DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDII 541
             V+EEG+ V  C+ VI+FD P  + SY+QS+GRAR+  S ++++++              
Sbjct: 462  SVLEEGVDVKQCNVVIKFDRPLDMRSYVQSKGRARKPGSTYVVLVD-------------- 507

Query: 542  RSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
              ++ VT    S+ P   F +   +  ++   VE  G +           +YC       
Sbjct: 508  --QKDVT-AYCSKLPSDIFTRLVPH--SRIIPVEDRGVT-----------KYC------- 544

Query: 602  YYTPKPIFKYKSAEEAYECELTLPSNAPFQ--TIVGPTSRNKNLSKQLVCLEACEKLHQV 659
                               EL LP N+P +   I+     NK +++  V LEAC +LH  
Sbjct: 545  ------------------AELLLPINSPIKHAIILKDAMPNKKIAQMAVALEACRQLHLK 586

Query: 660  GALNDHLLPSVEEPSE---NNLISKKNESLPG----AGTTKRKELHGTTPIRALSGRWGE 712
            G L+D+LLP   E       ++  + +E  PG     G++KRK+L+     RAL+    E
Sbjct: 587  GELDDNLLPKGRESIAKLLEHIDDEPDEYAPGMTAKVGSSKRKQLYDKKIARALNESLIE 646

Query: 713  ---KCGVILHAYKFNFAC---------------SIVTEIYSGFVLLIESELDNDVGNFEL 754
                C    + Y F   C                  TE    F  L   ++   +  F L
Sbjct: 647  PDKDC----YIYAFELECFREPEPVANPKRRKFQNPTEYEYCFGFLSTKDIPK-IPPFPL 701

Query: 755  ELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKR 814
             L   +  V+ TV+   +  +  +Q+ + + F     N LF ++    K +G+  F    
Sbjct: 702  FLRQGNMEVRLTVAPE-KTRVTEEQLEQIQYFH----NYLFTQVLQMCK-TGNLVF---- 751

Query: 815  ETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNG 874
              ++  +     L++PL   N   +G++ IN   +    + +E                 
Sbjct: 752  --DATVNAPLNTLIVPL---NKSKEGTYSINMKYVTEVVANME----------------- 789

Query: 875  GNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLA----IHTGRIYSIVEIVNNS 930
             N     T   + G              +A   KD +V+     +     Y + +I+ + 
Sbjct: 790  -NMPRVPTEDVRKGF-----------KFNADAYKDAIVMPWYRNVEQPVFYYVADILTDL 837

Query: 931  SAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV---------- 980
               S F    D + +TF  YF +KY + +    Q LL +  + N  NLL+          
Sbjct: 838  RPSSQF---PDSNFRTFNEYFIKKYHLEIYDQDQSLLDVDFTSNRLNLLLPRSQPQPRRA 894

Query: 981  -----------NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLP 1029
                                  +  G ++ + Q+ V   PEL+    +  ++   +  LP
Sbjct: 895  RSNSASSTTSNPVTPSESRESQASGGHHSSQRQILV---PELMDVHPISATLWNVISALP 951

Query: 1030 SVMQRLESLMLASQLREEI 1048
            S+  RL  L+L+ +LRE I
Sbjct: 952  SIFYRLNQLLLSDELREII 970



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 121/288 (42%), Gaps = 61/288 (21%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            L+L ALTT    +  S+ER E +GDS LK+A + +L+ T  ++HEG+LS  RS  V N  
Sbjct: 1350 LLLTALTTSNASDGMSLERFETIGDSFLKFATTDYLYHTLQEQHEGKLSWARSKEVSNCN 1409

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAP----------------------------GQ-L 1150
            L++LG    +   I  + FD    W+ P                            GQ +
Sbjct: 1410 LYRLGKKLGIPQLIVANKFDAHDSWLPPCYVPTCDFKAPNTSDAEEKDKEMERILSGQTI 1469

Query: 1151 SLRP---VPCECGVDTLEVPLDG---KFFTQDTKV----VVGKPCD-MGHRWMGSKTIAD 1199
              +P      + G D  +  +DG     F + T++    +   P + +  + +  K IAD
Sbjct: 1470 EEKPENKTGWDLGQDEAKKTVDGIETITFQKQTRILNEDITPLPYNLLTQQNISDKAIAD 1529

Query: 1200 CAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRIN------- 1252
              EALIG + +  G    L +M W+G+    +    D  +    LR     IN       
Sbjct: 1530 AMEALIGVHLLTLGPNPTLKVMNWMGLKVIQKDQATD--VQPPLLRFIDTPINPDASTKA 1587

Query: 1253 --------EIKDIESKIGYEFTVKFLLQEAITHASV---QEFYCYQNL 1289
                    +   +E KIGY F  +  L +A THAS    +   CYQ L
Sbjct: 1588 LDNLWQQFQFAQLEEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRL 1635



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 5/121 (4%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELC 1381
            ++ PKALGD+ ES+ GA+ +D+  NLD  W++   ++   +       P  P+REL+EL 
Sbjct: 1737 VEVPKALGDVFESVAGAIYLDSGRNLDTTWQVIYHLMKGTIETCCANPPRSPIRELMELE 1796

Query: 1382 DSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEK 1441
             +   F K    L+   V   + +   ++   G G  R+ + AK  AA + LK L   E+
Sbjct: 1797 GTKARFSKMERILESGKVRVTVDVG-NNMRFTGMG--RNYRIAKATAAKRALKYLHQMEE 1853

Query: 1442 R 1442
            +
Sbjct: 1854 Q 1854


>gi|321477029|gb|EFX87988.1| hypothetical protein DAPPUDRAFT_311480 [Daphnia pulex]
          Length = 711

 Score =  205 bits (521), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 193/703 (27%), Positives = 316/703 (44%), Gaps = 100/703 (14%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD----IAQAIKSNGFKKLIIFL 99
           F PR YQ+++F+ A   N I  L TG+GKT IA +LIK+    +A+++ + G  K  +FL
Sbjct: 25  FSPRDYQIELFQAALDENIIVYLPTGSGKTYIAALLIKEKSHEVAKSLSAGG--KRTVFL 82

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            PT+ L  QQ   +R HT  +V+E+YG+ GVD W    W+ E   N VLVMT QI +D L
Sbjct: 83  VPTIVLAIQQAAYLRKHTLLKVKEFYGSMGVDMWGRNKWETEFETNHVLVMTAQIFVDIL 142

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSS 218
             AF S   +  +V DECH A  + P  +++ +        +PK+ G+TA+ + RK    
Sbjct: 143 NHAFFSPYQLNLLVFDECHSAVKDAPMKQVLTKLRSCDVARRPKILGLTAA-LFRKRCKP 201

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF---YDQ------------S 263
             +  G I +L  ++      +   ++++    S+ + C     YD             S
Sbjct: 202 R-EVRGVIKQLSESMGC---IVRIPSDVQTVYRSSTKPCEVIFQYDDVNIGQNPVSQELS 257

Query: 264 KFCGSDLKGKLEVSWSKFDASLSK-LQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD 322
           K   + L      SW +    LS+   G  LN       K     + L D    I + L+
Sbjct: 258 KLIETLLASCTLSSWIQDFLKLSQNYSGCGLN--NTFGGKKSEKIEVLCDALKDIGFLLE 315

Query: 323 ELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
             G   AY   ++ +  ++ A        +S  Q   F  +V+++      +   +F  +
Sbjct: 316 NFGPYGAYHCAQLYIPILMGA--------KSRSQSADF-NKVINICHKIQDVCAPVFAKY 366

Query: 383 GFDYSKAVDLGYISTKLHELLQLFLSFG--------KSTQVLCIIFVERIIAAKVVERFV 434
               +K   + +++  +  LL +  +F         K+ ++  IIFVER   A V+  F+
Sbjct: 367 S---AKERLVLFVNPNVIRLLDIIQNFNPKRCRPDEKAFKMCGIIFVERRSVASVLYHFL 423

Query: 435 KKV-------PFLTHL-TVAYLTGSTTSV--DALTPKVQKEVLESFRGGKVNLLFATDVI 484
           K +        F+  L T+    GS +S+    +    QK+++  FR G  NLL AT V+
Sbjct: 424 KDIRQHDENLEFVKPLFTMGQAAGSASSLRESQILNMNQKDIMRDFRSGNCNLLVATSVL 483

Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK---QRNKLFDII 541
           EEG+ +P C+ ++RFD  +T   Y+Q++GRAR   + F +++   + K   +    F  I
Sbjct: 484 EEGVDIPECNLIVRFDKIRTYCDYVQTKGRARSKKAFFCMLVSSSDSKKFLEDMAQFHAI 543

Query: 542 RSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
             +   T      D +A      + +        + G  VT  SS++L++RYC  L S  
Sbjct: 544 EQQLVATGN-FEDDKDAILDNLFSQIIEPYTPYGNQGPRVTLQSSISLVNRYCSQLVSYG 602

Query: 602 YYTPKPIFKYKSAEEA----------------------------------YECELTLPSN 627
                P +  K  +E+                                  ++C L LP +
Sbjct: 603 ASVLVPRWSIKEVDESKADPLMLKKMKELMKQLPVVKPLSTKEPAEKIALFQCRLLLPKS 662

Query: 628 APFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALND-HLLP 668
           +P Q  +VG     K L+K+   L ACE+LHQ+  L+D HLLP
Sbjct: 663 SPLQGEVVGDPMLTKRLAKRAAALRACERLHQLKELDDLHLLP 705


>gi|353236820|emb|CCA68807.1| hypothetical protein PIIN_02669 [Piriformospora indica DSM 11827]
          Length = 1466

 Score =  204 bits (519), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 295/1260 (23%), Positives = 496/1260 (39%), Gaps = 197/1260 (15%)

Query: 130  VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHA-TGNHPYTK 188
             D  + + W  E+  ND +VMT +  LD L    LS   +  ++ID    A     P   
Sbjct: 41   ADGTEDETWM-ELMANDAIVMTHRQFLDYLDNGVLSFSQLNLLIIDNPELALESTQPLAA 99

Query: 189  IMKEFYHK-SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEME 247
            I+        D++P++FG     VV     +    E  + +LE TL ++ F     T  E
Sbjct: 100  IVSALGQIIQDDRPRIFG-----VVEPSGFNFEFTERHL-KLEETLGARFFGTSQATRDE 153

Query: 248  VFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLR 307
            +       + R Y       ++L  +        D +L K         +  D K +  R
Sbjct: 154  IV------ALREY------PNELVVRFSPPSKVVDTALCK-------HLRTFDTKERVYR 194

Query: 308  KQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY-------RQSSLQCKYF 360
             +     AK L  L E+G   A    +  L+K+ +A  E  +Y        +++ +    
Sbjct: 195  TEFR--AAKAL--LREVGPFAADWVWRRSLKKMEEANTE-RVYDGEDDTSAEAAKKEAAI 249

Query: 361  LEEVLHVIGS---ALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLC 417
             + V H + +    +P  D      GF+ S  V      TKL ++LQ F   G + +   
Sbjct: 250  RQSVHHSVKNWTFTMPNLDAA--SRGFNVSPKV------TKLVQILQCFQQAGDTFR--G 299

Query: 418  IIFVERIIAAKVVERFVK----KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473
            ++ V R I A  +   +K    ++PF+    V  LTG  +  +      Q  +LE F+ G
Sbjct: 300  VVLVRRRITALAIVEILKTASEQIPFIR---VEALTGPWSHENL----PQLSLLEDFKNG 352

Query: 474  KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQ 533
              NLL AT + E+G+ +P C+ VIR+D+  +  SY Q+R  A+  +   ILML++ +   
Sbjct: 353  IYNLLIATKIAEDGLDMPPCTCVIRYDISHSSVSYAQTRAMAKGKDCHLILMLDKNSDMG 412

Query: 534  RNKLFDIIRSERSVTD--TALSRDPEACFLKACTYVKTKSYIVESTGAS----------- 580
            R  +  + R    V D    ++ +    +  A     T+ Y  +S G +           
Sbjct: 413  RQTIRGVARMPDEVKDWTQRVAINKSGAYPPATISQNTEGYYSDSDGEAHAQAEYIKDPT 472

Query: 581  ----VTTDSSVNLIHRYCEMLPSDKYYTPK--PIFKYK-SAEEAYECELTLPSNAPFQTI 633
                +  + +V++I+RY   L        K   +F +   A   + C +  P N     +
Sbjct: 473  MSGRIYAEDAVSVIYRYLATLRKGSVEDVKMENVFYFTMRASSEHVCTVVFPPNGFIAHV 532

Query: 634  VGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE------PSENNLISKKNE--- 684
             GP S +   +K+  C EAC++LH++G L+  L P   E      P   ++  +  +   
Sbjct: 533  EGPPSVSPGAAKRAACFEACKRLHELGLLSYRLFPRPREVMRRLRPVAVSIDQEVEQTKG 592

Query: 685  ----SLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNF------ACSIVTEIY 734
                SLP A +++  E   T PI   +    +        YK  F      A S+  + Y
Sbjct: 593  DILPSLPPAPSSEGAEHDPTAPITTQAPTATQTAATGTRCYKRKFPEFWTNAVSVSHQRY 652

Query: 735  SGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGL 794
              +  ++  + +++       + L+++     V            ++  +      FNG 
Sbjct: 653  --YPTIVTVDRNHNAAKPYRPVLLITRAPLPPVEDFKLFFATQPSITYLRPALPTSFNGR 710

Query: 795  FGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPC-- 852
               L  +      R    K    S    +  +L+ PL    +FG   W I      P   
Sbjct: 711  EVDLLYRYTLRVMRSLLNKPLACS--KETIPFLIAPL----SFG---WNIELGKAEPAWP 761

Query: 853  -ASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDA--KNLKD 909
                 EFI       AA                       + ++ L   +++A  +++KD
Sbjct: 762  YPDATEFIPWDLMTYAAD----------------------QHLVPLRTDTIEALEQDIKD 799

Query: 910  MVVLAIHT--GRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV--LIHPGQP 965
             VV    T   + Y  + +  + +  +P +G         V Y   K      L+   QP
Sbjct: 800  AVVQDWWTEFTKRYDCMSVRRDLNPVTPLEGMRKQKFSNLVEYCKAKRKGFEGLVDYDQP 859

Query: 966  LLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSL 1025
            L+ +    +  N L        +  G+   + T K      + PEL  +  +P S +++L
Sbjct: 860  LIEVSNLPSVVNRLSPTISSSNTAPGAP--LYTAK-----FVIPELCSKFTIPASTMRTL 912

Query: 1026 YLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGD 1085
             LLPS+M+R+E  +L      E+N    N  I  S +  A+T          ERLELLGD
Sbjct: 913  SLLPSIMKRVEDTLLV----RELNAMYFNNEIDESALQAAITAPSASMEVDYERLELLGD 968

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV 1145
            + LKY  S +LF+T P KHEG L   R   + N  L        L  YI+   F P+ W+
Sbjct: 969  AYLKYLSSIYLFVTNPNKHEGILHLARQKIISNRALLVNADKSGLPQYIQSKPFLPKMWL 1028

Query: 1146 APGQLSLRPVPCEC-------GVDTLEV------PLDGKFFT---QDTKVVVGKP----- 1184
              G   +RP P          G   +E+      P      T   +D  + +        
Sbjct: 1029 PRGYTVVRPEPKSTATHKESRGNTNMEIKEERSSPDPNGLPTSANEDKSLTIKADEQKLK 1088

Query: 1185 -----CDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCI 1239
                  D  H+W+G K +AD AEA+IGA +  GG    L ++K L +     +   DD  
Sbjct: 1089 SKKSLYDEDHQWLGDKCVADVAEAIIGAAFQTGGPSLGLKVVKSLHLPLPF-IESWDDF- 1146

Query: 1240 TRASLRSYVP--------RINEIKDIESKIGYEFTVKFLLQEAITHASVQ--EFYCYQNL 1289
               SL++  P          N ++ +E+ +G +F    +L +A+TH S +  +  CY+ L
Sbjct: 1147 ---SLKAKAPPPDLTITLEDNVLETVEATVGAKFHRPHILAQALTHTSARGNDMTCYERL 1203


>gi|195584278|ref|XP_002081941.1| Dcr-2 [Drosophila simulans]
 gi|194193950|gb|EDX07526.1| Dcr-2 [Drosophila simulans]
          Length = 1666

 Score =  204 bits (518), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 180/691 (26%), Positives = 319/691 (46%), Gaps = 73/691 (10%)

Query: 33  DGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIK 88
           D  + S +   + PR YQL++ +   +RN I  L TG+GKT +A++++K    D+ + I 
Sbjct: 6   DSVTISKDVERYKPRSYQLRLVDYLTKRNGIVYLPTGSGKTFVAILVLKRFSQDLDKPIA 65

Query: 89  SNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVL 148
           S G  K  +F+  TV L  QQ   +R +T+F+V  Y G +GVDEW    W  EI  N VL
Sbjct: 66  SGG--KRALFMCNTVELARQQAVAVRRNTNFKVGFYVGEQGVDEWTRGKWSDEIENNQVL 123

Query: 149 VMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMT 207
           V T Q+ LD + +  ++L+ +  ++IDECHH T +HP+ + M+ F      N P+V G+T
Sbjct: 124 VGTAQVFLDMVTQKNMALNSISVVIIDECHHGTRHHPFREFMRLFTIADQTNLPRVVGLT 183

Query: 208 ASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQS- 263
              V+ KG +       ++ ELE T    + T+ D  E+E   ++     E+   +    
Sbjct: 184 G--VLIKG-NEISKVATKLKELEITYRGNIITVSDTKEIENVMLYATKPTEAMVTFPHQE 240

Query: 264 ------KFCGSDLKGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAK 316
                 +F  + +K +  VS    +  +  ++ S+ L+C +D   K   +++  +D+   
Sbjct: 241 QGPTVERFIIAQIK-QFFVSLELMNIGVQPVRRSKSLHCQRD-SSKKGFVKQMFNDF--- 295

Query: 317 ILYCLDELGLICAYEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGS 370
            +Y L E G+  A  A+   + +    + + E      ++R +   C    E + H++  
Sbjct: 296 -VYQLQEYGIYAASIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----ERIRHLLVQ 350

Query: 371 ALPLADKIFLDFGFDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIA 426
            L            D  ++ + + + + K+   L+ L +SF       + C++FVER   
Sbjct: 351 KLRDMTDDDDGPDDDVNTEDIIMNFSTPKIQRFLMSLKVSFAHKDPKDICCLVFVERRYT 410

Query: 427 AKVVE----RFVKKVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNL 477
            K +      ++   P L   LT  ++ G ++ S D    L  K QK  ++ FR G  NL
Sbjct: 411 CKCIYGLLLNYINSTPELRDVLTPQFMVGRNSISPDFGSVLERKHQKSAIQKFREGNANL 470

Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           +  + V+EEG+ V  C++V   D  KT + Y+Q++GRAR   ++F++       + R K 
Sbjct: 471 MICSSVLEEGIDVQACNHVFILDPLKTFNMYVQTKGRARSPEAKFVVFTAE---RDREKT 527

Query: 538 FDIIRSERSVTDTALSRDPEACFLKAC--TYVKTKSY------IVESTGASVTTDSSVNL 589
              I   R+  D       E    +A    Y   K +           GA +   +++ L
Sbjct: 528 CQQICQYRNAHDEIAEYLKERVLEEAMPELYEIEKHFQDVIKPFTNEHGAVLLPSNALTL 587

Query: 590 IHRYCEMLPSDKYYTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPT 637
           +HRYC+ +P+D +    P                +A++ +   + +P N   + TI    
Sbjct: 588 LHRYCQTIPTDAFGFLIPWINLLEEGERNKLFGANAKDKHVVSINMPLNCILRDTIYSDP 647

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
             N  ++K     +AC  L+ +G L++  LP
Sbjct: 648 MDNARIAKISAAFKACLALYSLGELSEKFLP 678



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 102/248 (41%), Gaps = 33/248 (13%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1161 FLAAITASSATDVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNL 1220

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL--------RPVPCECGVDTLEVPLDGKFF 1173
                 D  +   +    F PR    P  +SL        R  P   G   +  P + +  
Sbjct: 1221 LYCLADTDIPKKLNTILFTPRYTWVPPSISLPHNVLALWREKP---GFANMIGPHNLRDL 1277

Query: 1174 TQDTK--VVVGKPCDM----------GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMM 1221
              D +  +V G   D+          G   + +K IAD  EAL+G      GL  A  M+
Sbjct: 1278 ALDDEESLVKGNCSDIKYNRFVNFCVGLVAIANKVIADTLEALLGVIVKNYGLQHAFKML 1337

Query: 1222 KWLGI-DADLEVSLVDDCITRASLRSYVPRINEIK---------DIESKIGYEFTVKFLL 1271
            ++  I  +D++  L +        ++    +N  +          +E  +GY F  +  L
Sbjct: 1338 EYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGFLINHSHLEHNLGYTFKDRRYL 1397

Query: 1272 QEAITHAS 1279
             +A+TH S
Sbjct: 1398 LQALTHPS 1405



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 15/138 (10%)

Query: 1306 EYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW----RIFKPILS 1361
            E  +  P  GE   S  ++  PK LGD+LE+++ A+ +D + +L   W    R+F+P L 
Sbjct: 1533 EAEQGVPPKGEFNMST-NVDVPKTLGDVLEALIAAIYLDCR-DLQRTWEVIFRLFEPELQ 1590

Query: 1362 PIVTPDKLELPPLRELIELCDSLGYF---VKENCTLKGEMVHAELRLQLKDVLLVGEGQE 1418
                   + + P+R+LIE   +   F   + E  TL   MV  +     K + + G G  
Sbjct: 1591 EFTR--NMPINPIRQLIEHKHAKPVFSSPIMEGDTL---MVSCQFTCMEKSIKVYGFGSN 1645

Query: 1419 RSR-KAAKGKAASQLLKK 1435
            +++ K +  K A QLL K
Sbjct: 1646 KNQAKLSAAKHALQLLSK 1663


>gi|242076428|ref|XP_002448150.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor]
 gi|241939333|gb|EES12478.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor]
          Length = 698

 Score =  204 bits (518), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 157/476 (32%), Positives = 225/476 (47%), Gaps = 91/476 (19%)

Query: 1032 MQRLESLMLASQLREEINCHSRNF----HIPSSLILEALTTLGCCESFSMERLELLGDSV 1087
            M RLE+L++A +L+   N  S  F     I +S ILEALTT  C E  S+ERLE+LGD+ 
Sbjct: 34   MCRLENLLVAIELK---NVMSSYFPEASQISASGILEALTTERCLERISLERLEVLGDAF 90

Query: 1088 LKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAP 1147
            LKY V  H F++Y    EGQL+ RRS  V NS L++L   R LQ YIRD  F+P ++ A 
Sbjct: 91   LKYVVGRHNFISYEGLDEGQLTRRRSDIVSNSNLYELSIRRNLQVYIRDQHFEPTQFFAL 150

Query: 1148 GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGA 1207
            G    RP    C  D  E  L  K    D +      C   H W+  KTIAD  E+L+GA
Sbjct: 151  G----RPCKVVCNPDR-EATLHPKNIDPDRRENCNLRCTKSHHWLHRKTIADVVESLLGA 205

Query: 1208 YYVGGGLIAALYMMKWLGIDADLEVS----LVDDCITRASLRSYVPRINEIKDIESKIGY 1263
            + V  G  AA   ++W+GI  D E S    ++D   T  SL +Y+     I ++E  IGY
Sbjct: 206  FLVECGFKAAFAFLRWIGIKVDFENSALYRVLDASSTNLSLMNYM----NISELEELIGY 261

Query: 1264 EFTVKFLLQEAITHASVQEFY--CYQNLYKHLQHCSTLLLSQITEYV------KSFP--K 1313
             F  K LL +A  H S  +    CYQ +          L   + +Y+       ++P  K
Sbjct: 262  TFKHKGLLLQAFVHPSFNKHSGGCYQRM--------EFLGDAVLDYLMASYLYSAYPDLK 313

Query: 1314 PGETTD--------------------------SGPSMKA--------------------- 1326
            PG+ TD                             S+ A                     
Sbjct: 314  PGQLTDLKSLALNNNSFAYVAVKKSIHKYLIKDSKSLTAAINKFQNYVNLSSSEKDLLEE 373

Query: 1327 ---PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDS 1383
               PK LGD++ES VGAVL+D+  NL+ VW++   +L PI++   + + P+REL E+C  
Sbjct: 374  PTCPKVLGDIVESCVGAVLLDSGFNLNHVWKLMLMLLKPILSFCGMHIDPMRELREICQY 433

Query: 1384 LGY--FVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
             G+   + +     GE  H ++ + +   ++      R+ K A+  AA + L KL+
Sbjct: 434  NGFELGLPKPTEDNGEF-HVKVEVNIDGKMISCTAANRNSKDARKVAAQEALLKLK 488


>gi|392566224|gb|EIW59400.1| P-loop containing nucleoside triphosphate hydrolase protein
           [Trametes versicolor FP-101664 SS1]
          Length = 1508

 Score =  204 bits (518), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 217/834 (26%), Positives = 354/834 (42%), Gaps = 126/834 (15%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ ++ E +  RN I  L+TG+GKT IAV+ +K  A+       +K+  F+APTV LV
Sbjct: 20  RAYQQELLEESLHRNLIIALDTGSGKTHIAVLRMKLEAE----RHSRKVSWFIAPTVALV 75

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            QQY+VI+      V    GA   ++W D+  W++ +  + ++V TPQ+LLDAL  A++ 
Sbjct: 76  DQQYEVIKTAIPVSVGHVSGASEPNQWKDASLWRRILATHRIMVTTPQVLLDALHHAYVD 135

Query: 166 LDI-VCFIVIDECHHATGNHPYTKIMKEFYHK----------SDN-KPKVFGMTASPVVR 213
           L   +  +V DE HHATG HPY+ IMK FY            +D  +P V G+TASP+  
Sbjct: 136 LGTDIGLMVFDEAHHATGKHPYSMIMKNFYMNLPSRTNLTGPTDRVRPAVLGLTASPIYG 195

Query: 214 KGVSSAMDCEGQISELESTLDSQVFTI---EDKTEMEVFVPSAKESCRFYDQSKFCG--- 267
             V  A        +LE  LDS + +     D     V+ P  K          + G   
Sbjct: 196 GNVDVAF------RDLEKNLDSTIRSARKHRDNLAEHVYRPEFKHVLYASPIHVWDGLPS 249

Query: 268 ---SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLS------------- 311
                L+  ++    + D  +  L+ S+L   +  DD+H+ L +QLS             
Sbjct: 250 ANYQSLQTVIDALDIENDPYVKSLR-SRLAKLRPTDDRHR-LDQQLSKAIDKEDTFTHKG 307

Query: 312 --DYHAKILYCLDELGLICAYEAVKICLEKV-LKAQEECEIYRQSSLQCKYFLEEVLHVI 368
             D+         ELG   A   V   +E+  + A     I      + K +L  ++  +
Sbjct: 308 LRDFARAAAEICVELGPWAADWYVAKVIERAKVAANPYNNIMSAWQEKEKRYLLSIISKV 367

Query: 369 GSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQ-------LFLSFGKSTQVLCIIFV 421
               P +D   +  G           +S K+  L+        LF S  +      +IFV
Sbjct: 368 NVTTPPSDVDKIVSG-----------VSPKVRALVDSLVVEEGLFRS--RDEDYSGLIFV 414

Query: 422 ERIIAAKVVERFVKKVPFLTHL-TVAYLTGSTTSVDA---------LTPKVQKEVLESFR 471
            R      +   ++++P    L  +  L GS++S            +  + Q + L  F+
Sbjct: 415 TRRDTVLALAELLQRIPETAQLFRIGCLLGSSSSFKRHSFLDITRNILDESQADTLRDFK 474

Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNL 531
            G  NL+ +T V EEG+ +  C  VIRFD P  + ++ QSRGRAR+  S FI+M E    
Sbjct: 475 IGDKNLIVSTSVAEEGIDIQACGSVIRFDPPPNIVAWAQSRGRARRKRSSFIIMFEETG- 533

Query: 532 KQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYI---VESTGASVTTDSSVN 588
            Q+ K ++    +  +      RD      +   +     Y+   V STGA +T  S++ 
Sbjct: 534 PQKVKEWEATERQMMLAYNDPRRDAIVPVDEDDAFDDMDGYVEFEVASTGALLTLHSAIP 593

Query: 589 LIHRYCEMLPSDKYYTPKPIFKYKSAE--EAYECELTLPSNAPFQ-----TIVGPTSRNK 641
            ++ +C ++PS  + +  PI++    +  E +   L  PS  P+Q     T+  P +  K
Sbjct: 594 HLNHFCAVIPSGGHESHVPIYELDPPDYVEGWHS-LPNPSRMPYQGPWGATVSLPRALPK 652

Query: 642 NLSK--------------QLVCLEACEKLHQVGALNDHLLP---SVEEPSENNLISKKNE 684
           +L K              Q V  +A  +L+  G L++HLLP   ++E   +  + +   E
Sbjct: 653 HLRKFSTPQIHGSKRRAQQHVAYQAYLELYHAGLLDNHLLPLSTAIEPDKKEEVEAMLAE 712

Query: 685 SLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESE 744
               AGT +         +      W              FA  +  E   G  +L    
Sbjct: 713 VAKRAGTARVAIQMDPWSVYEDVSEW--------------FAHEVTVEGLPGLRMLTRRP 758

Query: 745 LDNDVGNFELELYLVSKTVKATV--SSSGQVHLDADQMSKAKCFQELFFNGLFG 796
           L       +     + K  +ATV  SS+    +  +++ +A+ +    FN L+G
Sbjct: 759 LPA-FNQEDFPTLYIPKLGEATVFISSAKAAPVHEEEIQRARQYTYRLFNMLYG 811



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 121/270 (44%), Gaps = 26/270 (9%)

Query: 1022 VKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLE 1081
            V+   +LPS+++ L + +    LR  +   +    +P  L+L A+T     E    +RLE
Sbjct: 975  VQYALMLPSILRWLANALTVDALRTNLFRTTSVAGVPLPLLLTAITAPIAQELSHYQRLE 1034

Query: 1082 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
             LGD+VLK+  S  L+  +P  HEG LS ++  AV NS+L K    + L  +I    F P
Sbjct: 1035 TLGDTVLKFTSSNQLYAEFPLWHEGYLSRKKDHAVANSSLAKEAVKKGLYQWIIRDRFVP 1094

Query: 1142 RRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCA 1201
            R+W  P   S    P +  V+  E   +             K  +     + +K +AD  
Sbjct: 1095 RKW-KPHCASSTQGPLDELVEEKEEVKEVDAKVGKDGKPKKKKAEE----LSTKMLADVV 1149

Query: 1202 EALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD----- 1256
            E+LIGA Y  GG   A+  +   G+            I+   L   +  ++E++D     
Sbjct: 1150 ESLIGAAYEHGGFDLAIDCVARFGL-----------GISWKKLSERIKEMHEVEDLVDLP 1198

Query: 1257 -----IESKIGYEFTVKFLLQEAITHASVQ 1281
                 +E  + Y+F  +  L +A+THAS Q
Sbjct: 1199 DQLALVEQMLNYQFKRRTFLVQALTHASYQ 1228



 Score = 41.6 bits (96), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 27/175 (15%)

Query: 1202 EALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKI 1261
            +AL  A Y G   + +L  +++LG D+ L++ +V D +  A  ++Y P    IK  E+ +
Sbjct: 1220 QALTHASYQGDSAVMSLERLEFLG-DSALDM-VVTDYLYHAEGKNYSPGYMHIKK-EAAV 1276

Query: 1262 GYEFTVKFLLQEAITHASVQEFYCYQ------------NLYKHLQHCSTLLLSQITEYVK 1309
                     L  ++T  SV   +               +L++ L H S  +L        
Sbjct: 1277 NSHILAYVCLSTSVTVESVMPTWTLGGGLATTDDSQKVHLWQCLLHSSHRVLEDQNLTFA 1336

Query: 1310 SFPKPGETTDSG------------PSMKAPKALGDLLESIVGAVLIDTKLNLDEV 1352
             F K G                   S++APK + D++ESI+GAV +D+  +LD V
Sbjct: 1337 RFEKHGPAIAQALREDRIYPWAALTSLQAPKFISDMVESILGAVYVDSMGSLDAV 1391


>gi|80979103|gb|ABB54754.1| Dicer-2 [Drosophila simulans]
          Length = 1537

 Score =  203 bits (517), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 178/678 (26%), Positives = 314/678 (46%), Gaps = 73/678 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   +RN I  L TG+GKT +A++++K    D+ + I S G  K  +F+  
Sbjct: 1   PRSYQLRLVDYLTKRNGIVYLPTGSGKTFVAILVLKRFSQDLDKPIASGG--KRALFMCN 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R +T+F+V  Y G +GVDEW    W  EI  N VLV T Q+ LD + +
Sbjct: 59  TVELARQQAVAVRRNTNFKVGFYVGEQGVDEWTRGKWSDEIENNQVLVGTAQVFLDMVTQ 118

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAM 220
             ++L+ +  ++IDECHH T +HP+ + M+ F      N P+V G+T   V+ KG +   
Sbjct: 119 KNMALNSISVVIIDECHHGTRHHPFREFMRLFTIADQTNLPRVVGLTG--VLIKG-NEIS 175

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQS-------KFCGSDL 270
               ++ ELE T    + T+ D  E+E   ++     E+   +          +F  + +
Sbjct: 176 KVATKLKELEITYRGNIITVSDTKEIENVMLYATKPTEAMVTFPHQEQGPTVERFIIAQI 235

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           K +  VS    +  +  ++ S+ L+C +D   K   +++  +D+    +Y L E G+  A
Sbjct: 236 K-QFFVSLELMNIGVQPVRRSKSLHCQRD-SSKKGFVKQMFNDF----VYQLQEYGIYAA 289

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E + H++   L           
Sbjct: 290 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----ERIRHLLVQKLRDMTDDDDGPD 345

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            D  ++ + + + + K+   L+ L +SF       + C++FVER    K +      ++ 
Sbjct: 346 DDVNTEDIIMNFSTPKIQRFLMSLKVSFAHKDPKDICCLVFVERRYTCKCIYGLLLNYIN 405

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L   LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 406 STPELRDVLTPQFMVGRNSISPDFGSVLERKHQKSAIQKFREGNANLMICSSVLEEGIDV 465

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDT 550
             C++V   D  KT + Y+Q++GRAR   ++F++       + R K    I   R+  D 
Sbjct: 466 QACNHVFILDPLKTFNMYVQTKGRARSPEAKFVVFTAE---RDREKTCQQICQYRNAHDE 522

Query: 551 ALSRDPEACFLKAC--TYVKTKSY------IVESTGASVTTDSSVNLIHRYCEMLPSDKY 602
                 E    +A    Y   K +           GA +   +++ L+HRYC+ +P+D +
Sbjct: 523 IAEYLKERVLEEAMPELYEIEKHFQDVIKPFTNEHGAVLLPSNALTLLHRYCQTIPTDAF 582

Query: 603 YTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCL 650
               P                +A++ +   + +P N   + TI      N  ++K     
Sbjct: 583 GFLIPWINLLEEGERNKLFGANAKDKHVVSINMPLNCILRDTIYSDPMDNARIAKISAAF 642

Query: 651 EACEKLHQVGALNDHLLP 668
           +AC  L+ +G L++  LP
Sbjct: 643 KACLALYSLGELSEKFLP 660



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 102/265 (38%), Gaps = 47/265 (17%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1189 FLAAITASSATDVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNL 1248

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEV-----PLDGKFFTQD 1176
                 D  +   +    F PR    P  +SL         +  E      P + +  T D
Sbjct: 1249 LYCLADTDIPKKLNTILFTPRYTWVPPSISLPHNVLALWREKPEFANMIGPHNLRDLTLD 1308

Query: 1177 TK--VVVGKPCDMGHR-------------WMGS-----------------KTIADCAEAL 1204
             +  +V G   D+ +              + GS                 K IAD  EAL
Sbjct: 1309 DEESLVKGNCSDIKYNRFVEGCRANGQSFYAGSDFSSEVNFCVGLVAIANKVIADTLEAL 1368

Query: 1205 IGAYYVGGGLIAALYMMKWLGI-DADLEVSLVDDCITRASLRSYVPRINEIK-------- 1255
            +G      GL  A  M+++  I  +D++  L +        ++    +N  +        
Sbjct: 1369 LGVIVKNYGLQHAFKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGFLINH 1428

Query: 1256 -DIESKIGYEFTVKFLLQEAITHAS 1279
              +E  +GY F  +  L +A+TH S
Sbjct: 1429 SHLEHNLGYTFKDRRYLLQALTHPS 1453


>gi|80979111|gb|ABB54758.1| Dicer-2 [Drosophila simulans]
          Length = 1564

 Score =  203 bits (517), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 178/678 (26%), Positives = 314/678 (46%), Gaps = 73/678 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   +RN I  L TG+GKT +A++++K    D+ + I S G  K  +F+  
Sbjct: 1   PRSYQLRLVDYLTKRNGIVYLPTGSGKTFVAILVLKRFSQDLDKPIASGG--KRALFMCN 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R +T+F+V  Y G +GVDEW    W  EI  N VLV T Q+ LD + +
Sbjct: 59  TVELARQQAVAVRRNTNFKVGFYVGEQGVDEWTRGKWSDEIENNQVLVGTAQVFLDMVTQ 118

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAM 220
             ++L+ +  ++IDECHH T +HP+ + M+ F      N P+V G+T   V+ KG +   
Sbjct: 119 KNMALNSISVVIIDECHHGTRHHPFREFMRLFTIADQTNLPRVVGLTG--VLIKG-NEIS 175

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQS-------KFCGSDL 270
               ++ ELE T    + T+ D  E+E   ++     E+   +          +F  + +
Sbjct: 176 KVATKLKELEITYRGNIITVSDTKEIENVMLYATKPTEAMVTFPHQEQGPTVERFIIAQI 235

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           K +  VS    +  +  ++ S+ L+C +D   K   +++  +D+    +Y L E G+  A
Sbjct: 236 K-QFFVSLELMNIGVQPVRRSKSLHCQRD-SSKKGFVKQMFNDF----VYQLQEYGIYAA 289

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E + H++   L           
Sbjct: 290 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----ERIRHLLVQKLRDMTDDDDGPD 345

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            D  ++ + + + + K+   L+ L +SF       + C++FVER    K +      ++ 
Sbjct: 346 DDVNTEDIIMNFSTPKIQRFLMSLKVSFAHKDPKDICCLVFVERRYTCKCIYGLLLNYIN 405

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L   LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 406 STPELRDVLTPQFMVGRNSISPDFGSVLERKHQKSAIQKFREGNANLMICSSVLEEGIDV 465

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDT 550
             C++V   D  KT + Y+Q++GRAR   ++F++       + R K    I   R+  D 
Sbjct: 466 QACNHVFILDPLKTFNMYVQTKGRARSPEAKFVVFTAE---RDREKTCQQICQYRNAHDE 522

Query: 551 ALSRDPEACFLKAC--TYVKTKSY------IVESTGASVTTDSSVNLIHRYCEMLPSDKY 602
                 E    +A    Y   K +           GA +   +++ L+HRYC+ +P+D +
Sbjct: 523 IAEYLKERVLEEAMPELYEIEKHFQDVIKPFTNEHGAVLLPSNALTLLHRYCQTIPTDAF 582

Query: 603 YTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCL 650
               P                +A++ +   + +P N   + TI      N  ++K     
Sbjct: 583 GFLIPWINLLEEGERNKLFGANAKDKHVVSINMPLNCILRDTIYSDPMDNARIAKISAAF 642

Query: 651 EACEKLHQVGALNDHLLP 668
           +AC  L+ +G L++  LP
Sbjct: 643 KACLALYSLGELSEKFLP 660



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 102/265 (38%), Gaps = 47/265 (17%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1189 FLAAITASSATDVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNL 1248

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEV-----PLDGKFFTQD 1176
                 D  +   +    F PR    P  +SL         +  E      P + +  T D
Sbjct: 1249 LYCLADTDIPKKLNTILFTPRYTWVPPSISLPHNVLALWREKPEFANMIGPHNLRDLTLD 1308

Query: 1177 TK--VVVGKPCDMGHR-------------WMGS-----------------KTIADCAEAL 1204
             +  +V G   D+ +              + GS                 K IAD  EAL
Sbjct: 1309 DEESLVKGNCSDIKYNRFVEGCRANGQSFYAGSDFSSEVNFCVGLVAIANKVIADTLEAL 1368

Query: 1205 IGAYYVGGGLIAALYMMKWLGI-DADLEVSLVDDCITRASLRSYVPRINEIK-------- 1255
            +G      GL  A  M+++  I  +D++  L +        ++    +N  +        
Sbjct: 1369 LGVIVKNYGLQHAFKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGFLINH 1428

Query: 1256 -DIESKIGYEFTVKFLLQEAITHAS 1279
              +E  +GY F  +  L +A+TH S
Sbjct: 1429 SHLEHNLGYTFKDRRYLLQALTHPS 1453


>gi|80979105|gb|ABB54755.1| Dicer-2 [Drosophila simulans]
 gi|80979109|gb|ABB54757.1| Dicer-2 [Drosophila simulans]
          Length = 1714

 Score =  203 bits (517), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 178/678 (26%), Positives = 314/678 (46%), Gaps = 73/678 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   +RN I  L TG+GKT +A++++K    D+ + I S G  K  +F+  
Sbjct: 1   PRSYQLRLVDYLTKRNGIVYLPTGSGKTFVAILVLKRFSQDLDKPIASGG--KRALFMCN 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R +T+F+V  Y G +GVDEW    W  EI  N VLV T Q+ LD + +
Sbjct: 59  TVELARQQAVAVRRNTNFKVGFYVGEQGVDEWTRGKWSDEIENNQVLVGTAQVFLDMVTQ 118

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAM 220
             ++L+ +  ++IDECHH T +HP+ + M+ F      N P+V G+T   V+ KG +   
Sbjct: 119 KNMALNSISVVIIDECHHGTRHHPFREFMRLFTIADQTNLPRVVGLTG--VLIKG-NEIS 175

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQS-------KFCGSDL 270
               ++ ELE T    + T+ D  E+E   ++     E+   +          +F  + +
Sbjct: 176 KVATKLKELEITYRGNIITVSDTKEIENVMLYATKPTEAMVTFPHQEQGPTVERFIIAQI 235

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           K +  VS    +  +  ++ S+ L+C +D   K   +++  +D+    +Y L E G+  A
Sbjct: 236 K-QFFVSLELMNIGVQPVRRSKSLHCQRD-SSKKGFVKQMFNDF----VYQLQEYGIYAA 289

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E + H++   L           
Sbjct: 290 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----ERIRHLLVQKLRDMTDDDDGPD 345

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            D  ++ + + + + K+   L+ L +SF       + C++FVER    K +      ++ 
Sbjct: 346 DDVNTEDIIMNFSTPKIQRFLMSLKVSFAHKDPKDICCLVFVERRYTCKCIYGLLLNYIN 405

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L   LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 406 STPELRDVLTPQFMVGRNSISPDFGSVLERKHQKSAIQKFREGNANLMICSSVLEEGIDV 465

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDT 550
             C++V   D  KT + Y+Q++GRAR   ++F++       + R K    I   R+  D 
Sbjct: 466 QACNHVFILDPLKTFNMYVQTKGRARSPEAKFVVFTAE---RDREKTCQQICQYRNAHDE 522

Query: 551 ALSRDPEACFLKAC--TYVKTKSY------IVESTGASVTTDSSVNLIHRYCEMLPSDKY 602
                 E    +A    Y   K +           GA +   +++ L+HRYC+ +P+D +
Sbjct: 523 IAEYLKERVLEEAMPELYEIEKHFQDVIKPFTNEHGAVLLPSNALTLLHRYCQTIPTDAF 582

Query: 603 YTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCL 650
               P                +A++ +   + +P N   + TI      N  ++K     
Sbjct: 583 GFLIPWINLLEEGERNKLFGANAKDKHVVSINMPLNCILRDTIYSDPMDNARIAKISAAF 642

Query: 651 EACEKLHQVGALNDHLLP 668
           +AC  L+ +G L++  LP
Sbjct: 643 KACLALYSLGELSEKFLP 660



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 103/268 (38%), Gaps = 53/268 (19%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1189 FLAAITASSATDVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNL 1248

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL--------RPVPCECGVDTLEVPLDGKFF 1173
                 D  +   +    F PR    P  +SL        R  P   G   +  P + +  
Sbjct: 1249 LYCLADTDIPKKLNTILFTPRYTWVPPSISLPHNVLALWREKP---GFANMIGPHNLRDL 1305

Query: 1174 TQDTK--VVVGKPCDMGHR-------------WMGS-----------------KTIADCA 1201
              D +  +V G   D+ +              + GS                 K IAD  
Sbjct: 1306 ALDDEESLVKGNCSDIKYNRFVEGCRANGQSFYAGSDFSSEVNFCVGLVAIANKVIADTL 1365

Query: 1202 EALIGAYYVGGGLIAALYMMKWLGI-DADLEVSLVDDCITRASLRSYVPRINEIK----- 1255
            EAL+G      GL  A  M+++  I  +D++  L +        ++    +N  +     
Sbjct: 1366 EALLGVIVKNYGLQHAFKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGFL 1425

Query: 1256 ----DIESKIGYEFTVKFLLQEAITHAS 1279
                 +E  +GY F  +  L +A+TH S
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPS 1453



 Score = 44.7 bits (104), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 15/138 (10%)

Query: 1306 EYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW----RIFKPILS 1361
            E  +  P  GE   S  ++  PK LGD+LE+++ A+ +D + +L   W    R+F+P L 
Sbjct: 1581 EAEQGVPPKGEFNMST-NVDVPKTLGDVLEALIAAIYLDCR-DLQRTWEVIFRLFEPELQ 1638

Query: 1362 PIVTPDKLELPPLRELIELCDSLGYF---VKENCTLKGEMVHAELRLQLKDVLLVGEGQE 1418
                   + + P+R+LIE   +   F   + E  TL   MV  +     K + + G G  
Sbjct: 1639 EFTR--NMPINPIRQLIEHKHAKPVFSSPIMEGDTL---MVSCQFTCMEKSIKVYGFGSN 1693

Query: 1419 RSR-KAAKGKAASQLLKK 1435
            +++ K +  K A QLL K
Sbjct: 1694 KNQAKLSAAKHALQLLSK 1711


>gi|453080784|gb|EMF08834.1| P-loop containing nucleoside triphosphate hydrolase protein
           [Mycosphaerella populorum SO2202]
          Length = 1400

 Score =  203 bits (517), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 188/706 (26%), Positives = 319/706 (45%), Gaps = 105/706 (14%)

Query: 23  MGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD 82
           M +S    A+DG + S +   F  R YQ ++ + + + N I  ++TG+GKT IA+  I+ 
Sbjct: 1   MAASDETMALDGAAQSGS--GFKLRSYQTEMVDRSLKENIIVAMDTGSGKTHIAIARIRA 58

Query: 83  IAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEY-----YGAKGVDEW-DSQ 136
             + ++ N   +L+ FLAP+  L  QQY  +    D E+  Y      GA GV++W D +
Sbjct: 59  EVERLRDN---RLVWFLAPSRTLAEQQYRAL----DLELSAYGVRLLTGADGVEKWTDQR 111

Query: 137 CWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196
            W   +    V++ TP +L DAL   F+++  +   V DE H  T   P  +IM+ FY  
Sbjct: 112 LWDAVLTNIKVVIATPAVLKDALAHGFVTISRLALCVFDEAHRCTKKAPMNQIMQLFYRP 171

Query: 197 SDNK----PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVP 251
           +  +    P + G++ASPV           +G +  +ES L S   T +  +TE+E  V 
Sbjct: 172 ARERGEPVPHILGLSASPVTSVK-------QGGLETIESNLHSLAVTPKTHRTELEKHVN 224

Query: 252 SAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS----LSKLQGSQLNCYKDMDDKHKTLR 307
             +     + +S    + L   L V+   +D +       L G         DD+ + + 
Sbjct: 225 LPELLTIRFSESHTASNRLCDALAVAARSYDLARDPYFVALTGQH-------DDRSRKIL 277

Query: 308 KQLS----DYHAKILYCLD--------ELGLICAYEAVKICLEKVLK--AQEECEIYRQS 353
           +Q+      Y  + L  LD        +LG   A   +  C+ +  +  + E   +   S
Sbjct: 278 QQVQLKQETYCLQQLRALDTRAARLHKQLGPSMAQWYISTCIRRFRQGMSSENFLMPDLS 337

Query: 354 SLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG------YISTKLHELLQLFL 407
             + K+ LE               IF D       AV LG       IS K   LLQ+ L
Sbjct: 338 EAERKHLLE---------------IFEDVEQHAGPAVALGTVDDTLVISEKARLLLQILL 382

Query: 408 SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH-LTVAYLTGSTTS-------VDALT 459
              +   V C+IFVE+ +    +   +++VP L     +A   G++T+        D + 
Sbjct: 383 QHAEPG-VHCLIFVEQRVQVTALAELLRRVPALEDSYKIAGFVGTSTNTNRKISVADLVA 441

Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
              Q + L++FR G  N++ AT+V+EEG+ +  C+ VI FD PK + S++Q RGRAR+ +
Sbjct: 442 LSDQSKDLQAFRDGHKNVMVATNVLEEGIDISACNLVICFDAPKNLVSFVQRRGRARRTD 501

Query: 520 SQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGA 579
           S++ L +      + NK +  + +E      A+  D         +    + Y V STGA
Sbjct: 502 SKYFLFVSENESAKGNKPWSALEAEMK----AMYMDDSRQLQLRPSEKPPRVYGVASTGA 557

Query: 580 SVTTDSSVNLIHRYCEMLP--SDKYYTPKPIFKYKSAE--EAYECELTLPSNAPFQTIVG 635
            +T D +++ ++ +C +    ++ Y   +P F+    E    +   + LP        V 
Sbjct: 558 MMTMDDAMSHLYHFCSVSTKHANNYIDLRPEFETSLNEITTRWSASVDLP------MTVH 611

Query: 636 PTSRNKNLSK---------QLVCLEACEKLHQVGALNDHLLPSVEE 672
           P+ R+ N +K         +   LEA   LH+ G +ND+LLP +++
Sbjct: 612 PSVRHANSAKPWETEEEAIKDAALEAYIALHRAGLVNDNLLPLIKD 657



 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 106/254 (41%), Gaps = 38/254 (14%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPS-SLILEALTTLGCCESFSMERLELLGD 1085
             +PS++ RLE+ +L   +R+ +    ++  +   +LI EA+++    E     RLE LGD
Sbjct: 893  FVPSILYRLETSLL---VRDLMETALKDIALTDHALIKEAISSPAAGEPTDYNRLEYLGD 949

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV 1145
             VLK+     +   +    E  L+  R   V NS L K   +R+L  YI    F  R+W 
Sbjct: 950  CVLKHYTELQVMSQHTDWPEAYLTLERDRIVRNSNLAKAALERELDKYILTEPFTGRKWR 1009

Query: 1146 APGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALI 1205
             P                        + T+  K    K      R M +KT+AD  EALI
Sbjct: 1010 PP------------------------YATEHVKDQAAK------RQMSTKTLADVVEALI 1039

Query: 1206 GAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEF 1265
            GA Y+ G    A   ++ L      +    +DC            +  +  +E+ IG+ F
Sbjct: 1040 GAAYLEGDTEKAFQCIRVLLP----QEKWSNDCFETLIAELTACPVANVLLLETLIGHTF 1095

Query: 1266 TVKFLLQEAITHAS 1279
            +   LL EA TH S
Sbjct: 1096 SHPTLLVEATTHGS 1109


>gi|80979101|gb|ABB54753.1| Dicer-2 [Drosophila simulans]
          Length = 1714

 Score =  203 bits (517), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 178/678 (26%), Positives = 314/678 (46%), Gaps = 73/678 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   +RN I  L TG+GKT +A++++K    D+ + I S G  K  +F+  
Sbjct: 1   PRSYQLRLVDYLTKRNGIVYLPTGSGKTFVAILVLKRFSQDLDKPIASGG--KRALFMCN 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R +T+F+V  Y G +GVDEW    W  EI  N VLV T Q+ LD + +
Sbjct: 59  TVELARQQAVAVRRNTNFKVGFYVGEQGVDEWTRGKWSDEIENNQVLVGTAQVFLDMVTQ 118

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAM 220
             ++L+ +  ++IDECHH T +HP+ + M+ F      N P+V G+T   V+ KG +   
Sbjct: 119 KNMALNSISVVIIDECHHGTRHHPFREFMRLFTIADQTNLPRVVGLTG--VLIKG-NEIS 175

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQS-------KFCGSDL 270
               ++ ELE T    + T+ D  E+E   ++     E+   +          +F  + +
Sbjct: 176 KVATKLKELEITYRGNIITVSDTKEIENVMLYATKPTEAMVTFPHQEQGPTVERFIIAQI 235

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           K +  VS    +  +  ++ S+ L+C +D   K   +++  +D+    +Y L E G+  A
Sbjct: 236 K-QFFVSLELMNIGVQPVRRSKSLHCQRD-SSKKGFVKQMFNDF----VYQLQEYGIYAA 289

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E + H++   L           
Sbjct: 290 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----ERIRHLLVQKLRDMTDDDDGPD 345

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            D  ++ + + + + K+   L+ L +SF       + C++FVER    K +      ++ 
Sbjct: 346 DDVNTEDIIMNFSTPKIQRFLMSLKVSFAHKDPKDICCLVFVERRYTCKCIYGLLLNYIN 405

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L   LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 406 STPELRDVLTPQFMVGRNSISPDFGSVLERKHQKSAIQKFREGNANLMICSSVLEEGIDV 465

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDT 550
             C++V   D  KT + Y+Q++GRAR   ++F++       + R K    I   R+  D 
Sbjct: 466 QACNHVFILDPLKTFNMYVQTKGRARSPEAKFVVFTAE---RDREKTCQQICQYRNAHDE 522

Query: 551 ALSRDPEACFLKAC--TYVKTKSY------IVESTGASVTTDSSVNLIHRYCEMLPSDKY 602
                 E    +A    Y   K +           GA +   +++ L+HRYC+ +P+D +
Sbjct: 523 IAEYLKERVLEEAMPELYEIEKHFQDVIKPFTNEHGAVLLPSNALTLLHRYCQTIPTDAF 582

Query: 603 YTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCL 650
               P                +A++ +   + +P N   + TI      N  ++K     
Sbjct: 583 GFLIPWINLLEEGERNKLFGANAKDKHVVSINMPLNCILRDTIYSDPMDNARIAKISAAF 642

Query: 651 EACEKLHQVGALNDHLLP 668
           +AC  L+ +G L++  LP
Sbjct: 643 KACLALYSLGELSEKFLP 660



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 102/268 (38%), Gaps = 53/268 (19%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK   + +L   Y   +EG L+  +S  V N  L
Sbjct: 1189 FLAAITASSATDVFDMERLEILGDSFLKLCATLYLASKYSDWNEGTLTQVKSKLVSNRNL 1248

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL--------RPVPCECGVDTLEVPLDGKFF 1173
                 D  +   +    F PR    P  +SL        R  P   G   +  P + +  
Sbjct: 1249 LYCLADTDIPKKLNTILFTPRYTWVPPSISLPHNVLALWREKP---GFANMIGPHNLRDL 1305

Query: 1174 TQDTK--VVVGKPCDMGHR-------------WMGS-----------------KTIADCA 1201
              D +  +V G   D+ +              + GS                 K IAD  
Sbjct: 1306 ALDDEESLVKGNCSDIKYNRFVEGCRANGQSFYAGSDFSSEVNFCVGLVAIANKVIADTL 1365

Query: 1202 EALIGAYYVGGGLIAALYMMKWLGI-DADLEVSLVDDCITRASLRSYVPRINEIK----- 1255
            EAL+G      GL  A  M+++  I  +D++  L +        ++    +N  +     
Sbjct: 1366 EALLGVIVKNYGLQHAFKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGFL 1425

Query: 1256 ----DIESKIGYEFTVKFLLQEAITHAS 1279
                 +E  +GY F  +  L +A+TH S
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPS 1453



 Score = 44.7 bits (104), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 15/138 (10%)

Query: 1306 EYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW----RIFKPILS 1361
            E  +  P  GE   S  ++  PK LGD+LE+++ A+ +D + +L   W    R+F+P L 
Sbjct: 1581 EAEQGVPPKGEFNMST-NVDVPKTLGDVLEALIAAIYLDCR-DLQRTWEVIFRLFEPELQ 1638

Query: 1362 PIVTPDKLELPPLRELIELCDSLGYF---VKENCTLKGEMVHAELRLQLKDVLLVGEGQE 1418
                   + + P+R+LIE   +   F   + E  TL   MV  +     K + + G G  
Sbjct: 1639 EFTR--NMPINPIRQLIEHKHAKPVFSSPIMEGDTL---MVSCQFTCMEKSIKVYGFGSN 1693

Query: 1419 RSR-KAAKGKAASQLLKK 1435
            +++ K +  K A QLL K
Sbjct: 1694 KNQAKLSAAKHALQLLSK 1711


>gi|80979113|gb|ABB54759.1| Dicer-2 [Drosophila simulans]
          Length = 1565

 Score =  203 bits (517), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 178/678 (26%), Positives = 314/678 (46%), Gaps = 73/678 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   +RN I  L TG+GKT +A++++K    D+ + I S G  K  +F+  
Sbjct: 1   PRSYQLRLVDYLTKRNGIVYLPTGSGKTFVAILVLKRFSQDLDKPIASGG--KRALFMCN 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R +T+F+V  Y G +GVDEW    W  EI  N VLV T Q+ LD + +
Sbjct: 59  TVELARQQAVAVRRNTNFKVGFYVGEQGVDEWTRGKWSDEIENNQVLVGTAQVFLDMVTQ 118

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAM 220
             ++L+ +  ++IDECHH T +HP+ + M+ F      N P+V G+T   V+ KG +   
Sbjct: 119 KNMALNSISVVIIDECHHGTRHHPFREFMRLFTIADQTNLPRVVGLTG--VLIKG-NEIS 175

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQS-------KFCGSDL 270
               ++ ELE T    + T+ D  E+E   ++     E+   +          +F  + +
Sbjct: 176 KVATKLKELEITYRGNIITVSDTKEIENVMLYATKPTEAMVTFPHQEQGPTVERFIIAQI 235

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           K +  VS    +  +  ++ S+ L+C +D   K   +++  +D+    +Y L E G+  A
Sbjct: 236 K-QFFVSLELMNIGVQPVRRSKSLHCQRD-SSKKGFVKQMFNDF----VYQLQEYGIYAA 289

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E + H++   L           
Sbjct: 290 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----ERIRHLLVQKLRDMTDDDDGPD 345

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            D  ++ + + + + K+   L+ L +SF       + C++FVER    K +      ++ 
Sbjct: 346 DDVNTEDIIMNFSTPKIQRFLMSLKVSFAHKDPKDICCLVFVERRYTCKCIYGLLLNYIN 405

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L   LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 406 STPELRDVLTPQFMVGRNSISPDFGSVLERKHQKSAIQKFREGNANLMICSSVLEEGIDV 465

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDT 550
             C++V   D  KT + Y+Q++GRAR   ++F++       + R K    I   R+  D 
Sbjct: 466 QACNHVFILDPLKTFNMYVQTKGRARSPEAKFVVFTAE---RDREKTCQQICQYRNAHDE 522

Query: 551 ALSRDPEACFLKAC--TYVKTKSY------IVESTGASVTTDSSVNLIHRYCEMLPSDKY 602
                 E    +A    Y   K +           GA +   +++ L+HRYC+ +P+D +
Sbjct: 523 IAEYLKERVLEEAMPELYEIEKHFQDVIKPFTNEHGAVLLPSNALTLLHRYCQTIPTDAF 582

Query: 603 YTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCL 650
               P                +A++ +   + +P N   + TI      N  ++K     
Sbjct: 583 GFLIPWINLLEEGERNKLFGANAKDKHVVSINMPLNCILRDTIYSDPMDNARIAKISAAF 642

Query: 651 EACEKLHQVGALNDHLLP 668
           +AC  L+ +G L++  LP
Sbjct: 643 KACLALYSLGELSEKFLP 660



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 102/265 (38%), Gaps = 47/265 (17%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1189 FLAAITASSATDVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNL 1248

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEV-----PLDGKFFTQD 1176
                 D  +   +    F PR    P  +SL         +  E      P + +  T D
Sbjct: 1249 LYCLADTDIPKKLNTILFTPRYTWVPPSISLPHNVLALWREKPEFANMIGPHNLRDLTLD 1308

Query: 1177 TK--VVVGKPCDMGHR-------------WMGS-----------------KTIADCAEAL 1204
             +  +V G   D+ +              + GS                 K IAD  EAL
Sbjct: 1309 DEESLVKGNCSDIKYNRFVEGCRANGQSFYAGSDFSSEVNFCVGLVAIANKVIADTLEAL 1368

Query: 1205 IGAYYVGGGLIAALYMMKWLGI-DADLEVSLVDDCITRASLRSYVPRINEIK-------- 1255
            +G      GL  A  M+++  I  +D++  L +        ++    +N  +        
Sbjct: 1369 LGVIVKNYGLQHAFKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGFLINH 1428

Query: 1256 -DIESKIGYEFTVKFLLQEAITHAS 1279
              +E  +GY F  +  L +A+TH S
Sbjct: 1429 SHLEHNLGYTFKDRRYLLQALTHPS 1453


>gi|158706446|sp|Q4WA22.2|DCL2_ASPFU RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease dcl2; Includes: RecName:
           Full=ATP-dependent helicase dcl2
          Length = 1388

 Score =  203 bits (516), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 185/684 (27%), Positives = 312/684 (45%), Gaps = 80/684 (11%)

Query: 36  SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK---DIAQAIKSNGF 92
           S+  ++  + PR YQL++ E + + N I  ++TG+GKT IAV+ IK   DI         
Sbjct: 6   STCQDASPYQPRNYQLEMLEASMKENIIVAMDTGSGKTHIAVLRIKAELDICSP------ 59

Query: 93  KKLIIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVM 150
            K++ FLAPTV L  QQ++VI  +          G   V+ W D   W   +N   V+V 
Sbjct: 60  DKVVWFLAPTVALCIQQHEVIASNLPAVRTRTLTGLDKVELWTDQSIWDAVLNGYRVIVS 119

Query: 151 TPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKVF 204
           T  +L DAL   F+ +  +  ++ DE HH T  H   KIM++FYH +  K      P++ 
Sbjct: 120 THAVLADALSHGFVKMSQLALLIFDEAHHCTRRHAANKIMQDFYHPTLTKSGPAAVPRIM 179

Query: 205 GMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFY--- 260
           G+TASPVVR           ++  +ES LD+   T    + E+  F         +Y   
Sbjct: 180 GLTASPVVRSN-------HQELLMVESNLDAVCRTPRLHRQELLKFTHRPHLQQIWYTPT 232

Query: 261 DQSKFCGSDLK-GKLEVSWSKFDAS----LSKLQGSQLN---CYKDMDDKHKTLRKQLSD 312
           D + F  + L  G L  +W   D      + +L+ S L+     K +       R+QL  
Sbjct: 233 DPAGFRSASLTLGALYHAWENLDIGDDPYIQRLRKSPLDDRALKKALLTGKTYCREQLRR 292

Query: 313 YHAKILYCLDELGLICA----YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI 368
           +  +  +  +ELG   A    Y ++K   ++V          R S +   +   E  +++
Sbjct: 293 FVDRSRHIFEELGEWAAEYYIYASIKQLRDRV----------RDSYMSGDWDEAEKAYLV 342

Query: 369 G--SALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIA 426
              S +P +D   + F  +     D   IS K   LL  FL      +   +IFV++ + 
Sbjct: 343 DFLSKIPTSD---IHFALNDP---DGFRISPKFESLLN-FLDSSDQREFSGLIFVKQRVT 395

Query: 427 AKVVERFVKKVPFLTH--LTVAYLTGSTTSV------DALTPKVQKEVLESFRGGKVNLL 478
              +   +   P+        AY+  S +S       D L  ++Q++ L+ FR G+ NL+
Sbjct: 396 VSAMTSLLSVHPYTRERFRCAAYVGWSNSSASKDILGDLLNMQLQRDTLDDFRSGRKNLI 455

Query: 479 FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF 538
            ATDV+EEG+ +  CS V+ +D P  + S+IQ RGRAR+  S F +M    +       +
Sbjct: 456 IATDVLEEGIDLSACSVVVCYDKPPNLKSFIQRRGRARRKQSTFAIMFPTDDTSADVSRW 515

Query: 539 DIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVE-----STGASVTTDSSVNLIHRY 593
             +  E+++ +    +D E               ++E     ST A +T D ++  +H +
Sbjct: 516 QDL--EQAMIEA--YQDDERQLQSVSALESLDEEVMERLTGDSTSAVLTADMAMAHLHHF 571

Query: 594 CEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPS--NAPFQTIVGPT-SRNKNLSKQLVC 649
           C +LP   Y   +P+F +++ E+   +  + LPS  +   +   G    R +  + +   
Sbjct: 572 CAVLPPQPYVDMRPVFSFETNEDGLLKGTVILPSCVHPKVRRTEGRRWWRTERAAMKETA 631

Query: 650 LEACEKLHQVGALNDHLLPSVEEP 673
            +A + L++ G +NDHLLP  ++P
Sbjct: 632 FQAYKSLYEFGLVNDHLLPLTKKP 655



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 131/292 (44%), Gaps = 43/292 (14%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSS-LILEALTTLGCCESF 1075
            +P ++      + +++++LE  ++A++LR+ I    R+    S+  I+ A++T       
Sbjct: 895  LPFTMAIFGLFISAIVEQLEIELIATRLRDTI---LRDVSFKSTDHIITAISTPLAHRLT 951

Query: 1076 SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIR 1135
            + +R E LGDS+LK++VSC LF  +P  HEG LS  R   V N  L K   D  L  YI 
Sbjct: 952  NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRDMIVQNPRLAKAALDTGLDAYIV 1011

Query: 1136 DSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSK 1195
                  R+W AP                          ++    V  K      R M +K
Sbjct: 1012 TKRLASRKWSAP------------------------LISEKLGRVPAK------RQMSTK 1041

Query: 1196 TIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP---RIN 1252
             +AD  EALIGA YV GG   A   ++    + +L    VD   TR + RS  P   R  
Sbjct: 1042 VLADVVEALIGAAYVDGGHSTAQACIRRFLPEINLHA--VD---TRTAARSVAPESARHM 1096

Query: 1253 EIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQI 1304
                ++  IGY F  + LL EA+TH S  ++      Y+ L++    +L  +
Sbjct: 1097 MNDRLKDHIGYTFEDESLLVEALTHPSC-DYDSTTQSYQRLEYLGDAVLDMV 1147


>gi|80979115|gb|ABB54760.1| Dicer-2 [Drosophila simulans]
          Length = 1714

 Score =  203 bits (516), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 178/678 (26%), Positives = 314/678 (46%), Gaps = 73/678 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   +RN I  L TG+GKT +A++++K    D+ + I S G  K  +F+  
Sbjct: 1   PRSYQLRLVDYLTKRNGIVYLPTGSGKTFVAILVLKRFSQDLDKPIASGG--KRALFMCN 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R +T+F+V  Y G +GVDEW    W  EI  N VLV T Q+ LD + +
Sbjct: 59  TVELARQQAVAVRRNTNFKVGFYVGEQGVDEWTRGKWSDEIENNQVLVGTAQVFLDMVTQ 118

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAM 220
             ++L+ +  ++IDECHH T +HP+ + M+ F      N P+V G+T   V+ KG +   
Sbjct: 119 KNMALNSISVVIIDECHHGTRHHPFREFMRLFTIADQTNLPRVVGLTG--VLIKG-NEIS 175

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQS-------KFCGSDL 270
               ++ ELE T    + T+ D  E+E   ++     E+   +          +F  + +
Sbjct: 176 KVATKLKELEITYRGNIITVSDTKEIENVMLYATKPTEAMVTFPHQEQGPTVERFIIAQI 235

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           K +  VS    +  +  ++ S+ L+C +D   K   +++  +D+    +Y L E G+  A
Sbjct: 236 K-QFFVSLELMNIGVQPVRRSKSLHCQRD-SSKKGFVKQMFNDF----VYQLQEYGIYAA 289

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E + H++   L           
Sbjct: 290 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----ERIRHLLVQKLRDMTDDDDGPD 345

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            D  ++ + + + + K+   L+ L +SF       + C++FVER    K +      ++ 
Sbjct: 346 DDVNTEDIIMNFSTPKIQRFLMSLKVSFAHKDPKDICCLVFVERRYTCKCIYGLLLNYIN 405

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L   LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 406 STPELRDVLTPQFMVGRNSISPDFGSVLERKHQKSAIQKFREGNANLMICSSVLEEGIDV 465

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDT 550
             C++V   D  KT + Y+Q++GRAR   ++F++       + R K    I   R+  D 
Sbjct: 466 QACNHVFILDPLKTFNMYVQTKGRARSPEAKFVVFTAE---RDREKTCQQICQYRNAHDE 522

Query: 551 ALSRDPEACFLKAC--TYVKTKSY------IVESTGASVTTDSSVNLIHRYCEMLPSDKY 602
                 E    +A    Y   K +           GA +   +++ L+HRYC+ +P+D +
Sbjct: 523 IAEYLKERVLEEAMPELYEIEKHFQDVIKPFTNEHGAVLLPSNALTLLHRYCQTIPTDAF 582

Query: 603 YTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCL 650
               P                +A++ +   + +P N   + TI      N  ++K     
Sbjct: 583 GFLIPWINLLEEGERNKLFGANAKDKHVVSINMPLNCILRDTIYSDPMDNARIAKISAAF 642

Query: 651 EACEKLHQVGALNDHLLP 668
           +AC  L+ +G L++  LP
Sbjct: 643 KACLALYSLGELSEKFLP 660



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 102/269 (37%), Gaps = 55/269 (20%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1189 FLAAITASSATDVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNL 1248

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAP----------------------GQLSLRPVPCE 1158
                 D  +   +    F PR  WV P                      G  +LR    +
Sbjct: 1249 LYCLADTDIPKKLNTILFTPRYTWVPPSISLPHNVLALWREKPEFANMIGPHNLR----D 1304

Query: 1159 CGVDTLEVPLDGKFF-TQDTKVVVGKPCDMGHRWMGS-----------------KTIADC 1200
              +D  E  + G     +  + V G   +    + GS                 K IAD 
Sbjct: 1305 LALDDEESLVKGNCSDIKYNRFVEGCRANGQSFYAGSDFSSEVNFCVGLVAIANKVIADT 1364

Query: 1201 AEALIGAYYVGGGLIAALYMMKWLGI-DADLEVSLVDDCITRASLRSYVPRINEIK---- 1255
             EAL+G      GL  A  M+++  I  +D++  L +        ++    +N  +    
Sbjct: 1365 LEALLGVIVKNYGLQHAFKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGF 1424

Query: 1256 -----DIESKIGYEFTVKFLLQEAITHAS 1279
                  +E  +GY F  +  L +A+TH S
Sbjct: 1425 LINHSHLEHNLGYTFKDRRYLLQALTHPS 1453



 Score = 44.7 bits (104), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 15/132 (11%)

Query: 1312 PKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW----RIFKPILSPIVTPD 1367
            P  GE   S  ++  PK LGD+LE+++ A+ +D + +L   W    R+F+P L       
Sbjct: 1587 PPKGEFNIST-NVDVPKTLGDVLEALIAAIYLDCR-DLQRTWEVIFRLFEPELQEFTR-- 1642

Query: 1368 KLELPPLRELIELCDSLGYF---VKENCTLKGEMVHAELRLQLKDVLLVGEGQERSR-KA 1423
             + + P+R+LIE   +   F   + E  TL   MV  +     K + + G G  +++ K 
Sbjct: 1643 NMPINPIRQLIEHKHAKPVFSSPIMEGDTL---MVSCQFTCMEKSIKVYGFGSNKNQAKL 1699

Query: 1424 AKGKAASQLLKK 1435
            +  K A QLL K
Sbjct: 1700 SAAKHALQLLSK 1711


>gi|449299331|gb|EMC95345.1| hypothetical protein BAUCODRAFT_46072, partial [Baudoinia
           compniacensis UAMH 10762]
          Length = 1298

 Score =  203 bits (516), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 179/658 (27%), Positives = 305/658 (46%), Gaps = 62/658 (9%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ ++ E +   N I ++ TG+GKT++A+  I+     ++++   KLI FLA +V L 
Sbjct: 6   RAYQREMLEASLCGNRI-IMPTGSGKTLVAIARIR---HELETSTPTKLIWFLANSVELC 61

Query: 107 HQQYDVIRVH-TDFEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRKAFL 164
            Q  + +++H + + +    G  GVD W  Q  W   ++   V++ TP +L DAL  AF+
Sbjct: 62  RQHLETLKLHLSAYPILSLTGEAGVDAWSEQRLWDAVLSDVRVVIGTPAVLKDALSHAFV 121

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK---PKVFGMTASPVVRKGVSSAMD 221
            +  +  +V DE HH   NHP   IM+ FYH  ++    P + G+TASP +         
Sbjct: 122 RMSRLALLVFDEAHHCIKNHPMNAIMQHFYHPGNSHKEVPHILGLTASPAINAQY----- 176

Query: 222 CEGQISELESTLDSQVFTIEDKTE--MEVFVPSAKESCRFYDQSKF---CGSDLKGKLEV 276
             G +++LE+ LD+ V T +   E  M    P      ++   S       S+L   ++ 
Sbjct: 177 --GSLTQLEANLDAFVATPKRSIEDLMRFVYPPHITIVQYPPTSILDYPASSELCAAVKR 234

Query: 277 SWSKFDASLSKLQGSQLNCYKDMDDK---HKTLRKQLS---DYHAKILYC----LDELGL 326
           +  ++D  L+    ++L  Y D   +    KT+ K+ +   D  +K+  C     D+LG+
Sbjct: 235 AVDEYDF-LTDPYVAELGQYHDERSRRKLQKTVEKRTTSCYDEISKLNRCAEAVYDQLGV 293

Query: 327 ICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
             A   V  C+E+ + A      Y  + L     LE   H++         +F  F   +
Sbjct: 294 PSAEHFVNTCIERYITAAVS---YGTTMLPDITSLER-QHLV--------DLFRAFPARF 341

Query: 387 SKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFV-ERIIAAKVVERFVKKVPFLTHLTV 445
              +    +S K   LL L  ++  S +V  I+FV ER +   +V           H ++
Sbjct: 342 PGRL---LVSPKADRLLSLLAAYA-SPEVRAIVFVKERAVVTALVHLLRNAEQLRGHYSI 397

Query: 446 AYLTGSTTS------VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
               G++T        D   P+ Q+  L  FR G  NL+ AT V+EEG+ V  C+ VI F
Sbjct: 398 GSFVGTSTFEGRSSLADLADPRQQQNDLLGFRRGDKNLIVATSVLEEGIDVSACNLVINF 457

Query: 500 DLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC 559
           D P T  +++Q RGRARQ NS++ L++   + +     +    ++      +   +  A 
Sbjct: 458 DQPDTFIAFLQRRGRARQENSRYFLLVSEDDTRASASKWQAEEAKMKREYESARAERAAA 517

Query: 560 FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEM-LPSDKYYTPKPIF-KYKSAEEA 617
             +    +  +SY VESTGA +T + +   ++ +C   + ++ Y   +P F   +  + A
Sbjct: 518 EAEDVQALNARSYRVESTGALLTINDAKAHLYHFCNTSVQANNYVDTEPDFYAVRGKDNA 577

Query: 618 YECELTLPSNAPFQTIVGPTSRNKNLSK----QLVCLEACEKLHQVGALNDHLLPSVE 671
           +   +TLPS      +    SR++  S+    +    EA   LH+ G L D+LLP  E
Sbjct: 578 WTASVTLPSYV-HPDVRSAASRDRWSSEAGAIKDAAFEAYVALHKAGLLTDNLLPLTE 634



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 120/266 (45%), Gaps = 38/266 (14%)

Query: 1018 PISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSM 1077
            P+   +    +PS+M +++  +   +++               LI EA++     E    
Sbjct: 866  PLRSARFAAFIPSIMHQVDVRLTVQEMQHSSVLQDLQLK-NGDLIQEAISAPSAAEKSDY 924

Query: 1078 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1137
             RLE LGD++LK+ VS ++ + +P   E  L+  +S  V N+TL +   + +L  +I   
Sbjct: 925  NRLEYLGDALLKFWVSINVMVLHPTWPEKYLTMEKSRRVSNNTLAQAAHNLQLNRWILTK 984

Query: 1138 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTI 1197
            +F   +W        RP+                + ++  +    +P     + + SKT+
Sbjct: 985  SFTGTKW--------RPI----------------YASEVLRTDFSQP-----KQISSKTL 1015

Query: 1198 ADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIK-- 1255
            AD  EALIGA Y+ GG     Y   +  I + L+    +  +  +SLR ++ +    +  
Sbjct: 1016 ADVVEALIGAAYLDGG-----YQNAYTCIRSLLKQCWSEHYLICSSLRGHMEQTAADQVS 1070

Query: 1256 -DIESKIGYEFTVKFLLQEAITHASV 1280
             D+   IG+ F   +LL EA+THAS+
Sbjct: 1071 SDLGRFIGHHFRFPYLLIEALTHASL 1096


>gi|80979107|gb|ABB54756.1| Dicer-2 [Drosophila simulans]
          Length = 1567

 Score =  202 bits (515), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 178/678 (26%), Positives = 314/678 (46%), Gaps = 73/678 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           PR YQL++ +   +RN I  L TG+GKT +A++++K    D+ + I S G  K  +F+  
Sbjct: 1   PRSYQLRLVDYLTKRNGIVYLPTGSGKTFVAILVLKRFSQDLDKPIASGG--KRALFMCN 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ   +R +T+F+V  Y G +GVDEW    W  EI  N VLV T Q+ LD + +
Sbjct: 59  TVELARQQAVAVRRNTNFKVGFYVGEQGVDEWTRGKWSDEIENNQVLVGTAQVFLDMVTQ 118

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAM 220
             ++L+ +  ++IDECHH T +HP+ + M+ F      N P+V G+T   V+ KG +   
Sbjct: 119 KNMALNSISVVIIDECHHGTRHHPFREFMRLFTIADQTNLPRVVGLTG--VLIKG-NEIS 175

Query: 221 DCEGQISELESTLDSQVFTIEDKTEME---VFVPSAKESCRFYDQS-------KFCGSDL 270
               ++ ELE T    + T+ D  E+E   ++     E+   +          +F  + +
Sbjct: 176 KVATKLKELEITYRGNIITVSDTKEIENVMLYATKPTEAMVTFPHQEQGPTVERFIIAQI 235

Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           K +  VS    +  +  ++ S+ L+C +D   K   +++  +D+    +Y L E G+  A
Sbjct: 236 K-QFFVSLELMNIGVQPVRRSKSLHCQRD-SSKKGFVKQMFNDF----VYQLQEYGIYAA 289

Query: 330 YEAVKICLEKVLKAQEECE------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
             A+   + +    + + E      ++R +   C    E + H++   L           
Sbjct: 290 SIAIISLIVEFDIKRRQAETLSVKLMHRTALTLC----ERIRHLLVQKLRDMTDDDDGPD 345

Query: 384 FDY-SKAVDLGYISTKLHE-LLQLFLSFGKS--TQVLCIIFVERIIAAKVVE----RFVK 435
            D  ++ + + + + K+   L+ L +SF       + C++FVER    K +      ++ 
Sbjct: 346 DDVNTEDIIMNFSTPKIQRFLMSLKVSFAHKDPKDICCLVFVERRYTCKCIYGLLLNYIN 405

Query: 436 KVPFLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
             P L   LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V
Sbjct: 406 STPELRDVLTPQFMVGRNSISPDFGSVLERKHQKSAIQKFREGNANLMICSSVLEEGIDV 465

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDT 550
             C++V   D  KT + Y+Q++GRAR   ++F++       + R K    I   R+  D 
Sbjct: 466 QACNHVFILDPLKTFNMYVQTKGRARSPEAKFVVFTAE---RDREKTCQQICQYRNAHDE 522

Query: 551 ALSRDPEACFLKAC--TYVKTKSY------IVESTGASVTTDSSVNLIHRYCEMLPSDKY 602
                 E    +A    Y   K +           GA +   +++ L+HRYC+ +P+D +
Sbjct: 523 IAEYLKERVLEEAMPELYEIEKHFQDVIKPFTNEHGAVLLPSNALTLLHRYCQTIPTDAF 582

Query: 603 YTPKPIFKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCL 650
               P                +A++ +   + +P N   + TI      N  ++K     
Sbjct: 583 GFLIPWINLLEEGERNKLFGVNAKDKHVVSINMPLNCILRDTIYSDPMDNARIAKISAAF 642

Query: 651 EACEKLHQVGALNDHLLP 668
           +AC  L+ +G L++  LP
Sbjct: 643 KACLALYSLGELSEKFLP 660



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 103/268 (38%), Gaps = 53/268 (19%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1189 FLAAITASSATDVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNL 1248

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL--------RPVPCECGVDTLEVPLDGKFF 1173
                 D  +   +    F PR    P  +SL        R  P   G   +  P + +  
Sbjct: 1249 LYCLADTDIPKKLNTILFTPRYTWVPPSISLPHNVLALWREKP---GFANMIGPHNLRDL 1305

Query: 1174 TQDTK--VVVGKPCDMGHR-------------WMGS-----------------KTIADCA 1201
              D +  +V G   D+ +              + GS                 K IAD  
Sbjct: 1306 ALDDEESLVKGNCSDIKYNRFVEGCRANGQSFYAGSDFSSEVNFCVGLVAIANKVIADTL 1365

Query: 1202 EALIGAYYVGGGLIAALYMMKWLGI-DADLEVSLVDDCITRASLRSYVPRINEIK----- 1255
            EAL+G      GL  A  M+++  I  +D++  L +        ++    +N  +     
Sbjct: 1366 EALLGVIVKNYGLQHAFKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGFL 1425

Query: 1256 ----DIESKIGYEFTVKFLLQEAITHAS 1279
                 +E  +GY F  +  L +A+TH S
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPS 1453


>gi|46117132|ref|XP_384584.1| hypothetical protein FG04408.1 [Gibberella zeae PH-1]
          Length = 1451

 Score =  202 bits (515), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 197/713 (27%), Positives = 324/713 (45%), Gaps = 72/713 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQ ++ E + +RN I  ++TG+GKT +AVM I+     + +    K+I FL  TV L
Sbjct: 78  PRGYQREMLEQSIKRNVIVAMDTGSGKTQVAVMRIQ---HELDTCAPDKIIWFLGKTVSL 134

Query: 106 VHQQYDVI-RVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
             QQY V+ R      ++   G   +D W    W + +N   ++V T  IL DAL  AF+
Sbjct: 135 CEQQYSVVQRQMPSVSMKLLTGQLNIDAWSEDVWPRILNGTRIIVSTFDILRDALDHAFV 194

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVSSAM 220
            ++++  IV DE H+   N    K+M  FYH+  N     P + G+TASP+  K +    
Sbjct: 195 KMNMLSLIVFDEVHNCVKNSSGRKVMVNFYHEHKNAGMPVPAILGLTASPIQSKSI---- 250

Query: 221 DCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYD-QSKFCGSDLKGKLEVSW 278
               +I ELE T+D+   T   ++ E+   V     S   YD +     + L   L+  +
Sbjct: 251 --HDEILELEVTMDAVCITPTINRKELLQHVNKPNLSRVLYDVEEHPTRTPLMQTLQSEY 308

Query: 279 SKFDASL--SKLQGSQLNCYKD--------MDDKHKTL-RKQLSDYHAKILYCLDELGLI 327
           S  D +   S ++  QL    +        M  KH+T  +KQL     K    LDELG  
Sbjct: 309 SAMDITQDPSIIKAKQLIAKGEKTGPEILSMLMKHRTFSQKQLKSLWNKSKDILDELGPW 368

Query: 328 CAYEAVKICLEKVLKAQEECEIYRQS-SLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
            A + +   +   LK  +    + +S S + + +L   L  I ++ P   K+        
Sbjct: 369 AADKYISELVSLFLKRIDSPMTFNESWSNEDRTYLAGHLRQIAAS-PHQPKL-------- 419

Query: 387 SKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH-LTV 445
               D   ++ K ++L+Q  L+  +   V+ IIFV    AA V+   +++ P +     V
Sbjct: 420 ---PDRHNLADKTNKLIQELLAADED--VVGIIFVRSRAAANVLCALLREHPEIRQRYRV 474

Query: 446 AYLTGSTTS------VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
             + GS  +      +    P    + L  F+ G +NLL +T V+EEG+ V  C+ VI F
Sbjct: 475 GSVVGSAATKIRKQNIYEYLPGATADTLRDFKTGAINLLVSTSVLEEGIDVAVCNLVICF 534

Query: 500 DLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC 559
           D   T+ S+IQ RGRAR+  S+ I+ L R +   R   +D +  +          + +A 
Sbjct: 535 DETTTLKSHIQRRGRARKQKSKMIV-LARSSSDARE--WDSLERDMKSRYEQERGELDAL 591

Query: 560 FLKACTYVKTK-SYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYK-----S 613
            ++A T   +  SY V+++GA +  ++S   +  +C  +    Y  P+P++ +      S
Sbjct: 592 EIEARTEATSSFSYTVKNSGARLDLENSRQHLEHFCNKVFQRDYVDPRPVYIFHKTELGS 651

Query: 614 AEEAYECELTLPSNAP---FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSV 670
           A   +   +TLPS  P    +   G   R++  + +     A   LHQ G ++DHLLP  
Sbjct: 652 APPTFSATVTLPSGLPKHLRRCQGGGGWRSEKNAMKEAAFRAFVMLHQEGLVSDHLLP-- 709

Query: 671 EEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKF 723
                  L +   E+      T  + L    P + ++ RW       L+AY+F
Sbjct: 710 -------LNADSKEAEEEVQLTAPELLFD--PWKDIAQRWETTAEKWLYAYEF 753



 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 126/266 (47%), Gaps = 32/266 (12%)

Query: 1016 DVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESF 1075
            +VP    K   L+PS++  LE  ++A++L   +        +   L++EA+++    E  
Sbjct: 944  EVPRRAAKCGMLIPSIIHELEVQLIANELSSTLLAPVGITDL--QLVIEAISSRSAAEPV 1001

Query: 1076 SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIR 1135
              ER+E LGDSVLKY      +  +P   EG L+  +   V N+ L ++  +  L  +I 
Sbjct: 1002 DYERIEFLGDSVLKYCTVIQAYSEHPFWPEGLLNHFKDRLVSNTRLTRMCLETGLSKFIF 1061

Query: 1136 DSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSK 1195
               F   +W        RP+  +  +D                    KP D   R++G K
Sbjct: 1062 SKTFTGIKW--------RPLYRDEFLDK-------------------KPVDGVSRFVGPK 1094

Query: 1196 TIADCAEALIGAYYVGGGLIAALYMMK-WLGIDADL-EVSLVDDCITRASLRSYVPRINE 1253
            T+AD  EAL+GA Y  GG+  AL  +K +LG   +  +  +  D + RA++ S VP    
Sbjct: 1095 TLADVVEALVGASYQDGGISKALECIKVFLGTKCNWHDDKVARDILFRAAI-SDVPLPPT 1153

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHAS 1279
            ++ +E  IGY F  K LL EA+TH S
Sbjct: 1154 MEPLEELIGYTFQKKSLLIEAMTHGS 1179


>gi|378727578|gb|EHY54037.1| RNA helicase/RNAse III [Exophiala dermatitidis NIH/UT8656]
          Length = 1629

 Score =  202 bits (513), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 174/572 (30%), Positives = 267/572 (46%), Gaps = 99/572 (17%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA---IKSNGFK-KLIIFLAPT 102
           R YQ ++FE AK  N IAVL+TG+GKT+IA +LI+   Q     +S G   K I FL  +
Sbjct: 95  REYQEELFERAKDENVIAVLDTGSGKTLIAALLIRHFLQQELIDRSQGKPPKTIFFLVNS 154

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V L +QQ   +  +   +V   YG   VD W    W +   +N+V+V T  +L   L   
Sbjct: 155 VPLANQQARFLNANLPQKVIALYGDSKVDLWRRAEWNRICAENNVVVCTAPVLDQCLMHG 214

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-SDNKPKVFGMTASPVVRKGVSSAMD 221
           +L++  +  IV DE HH   NHPY++I++++Y K  DN+P++FGMTASPV      S  D
Sbjct: 215 YLNMGQISLIVFDEAHHCKKNHPYSRIIRDYYLKWQDNRPRIFGMTASPV----DESRKD 270

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281
            +  +++LES L S++ T  D +    F P   +    Y         L G+ E +    
Sbjct: 271 IKQVVADLESMLQSKIITTNDLSVFG-FAPRPADEYWIYPPP------LVGEYETA---L 320

Query: 282 DASLSKLQGSQLNCYKDMDDKHKTLRKQLS-DYHAKILYCLDELGLICAYEAVKICLEKV 340
            A L  L G      +D+  +H +  KQ S D  A +   + +  L  +   +   + K+
Sbjct: 321 HAQLHPLCG----FIEDL-KQHFSFSKQASRDLGAWVADRVWKYALPTSEHGITAIISKL 375

Query: 341 LKAQEEC----EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF-----DYSKAVD 391
            ++        +  R+++L+    + E + VI +          DFG      D   +  
Sbjct: 376 ERSSTYIHAIDDAGREAALKS---VREAISVIENH---------DFGAPCLEKDNELSPK 423

Query: 392 LGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTG 450
           + Y+  +L E    F           I+FVE R+ A  + + F  +V  L ++    L G
Sbjct: 424 VAYLRQRLKERYSSF------PNTRAIVFVEQRLTAFALCDLF--RVLDLPNVRPGLLVG 475

Query: 451 -STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
            S   +D+ + K Q+  LE FR G +NL+FAT V EEG+ +P C+ V+RFDL KT   Y+
Sbjct: 476 ISQKGIDSSSWKDQEVALEKFRVGTINLIFATSVAEEGIDIPQCNLVVRFDLYKTPIQYM 535

Query: 510 QSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKT 569
           QSRGRAR   S +  M+E G            +S +S  D A+S+D              
Sbjct: 536 QSRGRARMKGSVYAHMMEEGK-----------QSHQSEVDYAISQD-------------- 570

Query: 570 KSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
                             + I RYC+ LP D+
Sbjct: 571 ------------------DYIRRYCQELPPDR 584



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 164/448 (36%), Gaps = 127/448 (28%)

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            + P+ L    V  SV +   L PS++ RLE+ ++  +  ++++       IP +L LEA 
Sbjct: 993  IAPQPLEIARVSYSVAQICQLWPSILHRLEAYLIVGEAFDKLDLR----QIPYNLALEAF 1048

Query: 1067 T--------------------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEG 1106
            T                    T     S + ERLE +GDS+LK   +  +F       EG
Sbjct: 1049 TKDINADDEMGEMGIHSELDGTAEPTSSVNYERLEFIGDSLLKMMTTITVFNRTTCNEEG 1108

Query: 1107 QLSARRSWAVCNSTLHKLGT--DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTL 1164
             +  +R   + N  L  + +  + +L  YIR    D  RW    + +  P          
Sbjct: 1109 -MHCKRMEMISNKRLCSVASSPEYELYRYIRAGTGD--RW----RDTWYP---------- 1151

Query: 1165 EVPLDGKFFTQDTKVVVGKPCDMGHR--WMGSKTIADCAEALIGAYYVGGGLIAALYMMK 1222
                  +F  Q  K  V K  D  HR   +G KTIAD  EA IGA  +    +       
Sbjct: 1152 ------EFLRQLKKGRVIKLTDK-HRTHALGKKTIADVCEATIGACIMTTQDLPTSTRFD 1204

Query: 1223 WLGIDADLE-VSLVDDCIT------------RASLRSYVPRINEI-KDIESKIGYEFTVK 1268
             LGI A  + V   D  IT            R SL    P  N++ + +    GY F   
Sbjct: 1205 -LGIKAITKLVGHEDHAITSWREILPMYKAPRWSLAMNDPVANDLARKVYHVTGYRFKNP 1263

Query: 1269 FLLQEAITHASVQ------------------EFYCYQNLYKH------------------ 1292
             LL+ A TH+S Q                  ++ C   L+++                  
Sbjct: 1264 CLLRSAFTHSSDQNSPVPDLQRLEFLGDACLDWVCIWWLFRNNPTRGPQWLTEHKMAMVS 1323

Query: 1293 ----------------LQHCSTLLLSQITEYVKSFPKPGETTDSGPSM--------KAPK 1328
                            +   S  L ++I  Y     +  E  D  P            PK
Sbjct: 1324 NRFLAALAVILGFNRLISASSPALYAEIGTYAAKVLELYEQEDVKPDFWTRVTSGSAPPK 1383

Query: 1329 ALGDLLESIVGAVLIDTKLNLDEVWRIF 1356
            AL DL+ES +GAVL+D+  +  E+ + F
Sbjct: 1384 ALADLVESYLGAVLVDSGFDFAEIEKFF 1411


>gi|63054443|ref|NP_588215.2| dicer [Schizosaccharomyces pombe 972h-]
 gi|1351642|sp|Q09884.1|DCR1_SCHPO RecName: Full=Protein Dicer; AltName: Full=Cell cycle control
           protein dcr1; AltName: Full=RNA interference pathway
           protein dcr1; Includes: RecName: Full=Endoribonuclease
           dcr1; Includes: RecName: Full=ATP-dependent helicase
           dcr1
 gi|157310516|emb|CAB41233.2| dicer [Schizosaccharomyces pombe]
          Length = 1374

 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 196/657 (29%), Positives = 305/657 (46%), Gaps = 84/657 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA---IKSNGF--KKLIIFLAP 101
           R YQ  V+ +A ++NT+ V+ TGAGKT++AV LIK   +    I+ +    KK+ +FL  
Sbjct: 13  RKYQQDVYNIASKQNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFLVN 72

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
            V LV QQ + IR     +V  +YG   + E   Q     I K +V+V+T  +    L +
Sbjct: 73  KVPLVFQQAEYIRSQLPAKVGMFYGELSI-EMSEQLLTNIILKYNVIVITADLFYLFLAR 131

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--------NKPKVFGMTASPVV- 212
            FLS++ +  I+ DECHHA GN  Y +IM +FYH++           P++FGMTASP   
Sbjct: 132 GFLSINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAVLSKKHFTLPRIFGMTASPFTG 191

Query: 213 RKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
           +KG     +   ++ + E   DS+   + +  E+  +    +ES   Y            
Sbjct: 192 KKG-----NLYHRLYQWEQLFDSKAHVVSE-NELADYFCLPEESYVMYS----------N 235

Query: 273 KLEVSWSKFDASLSK----LQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
           KL V  S  D+ + K    LQG +L          +T+   L       LY +D    + 
Sbjct: 236 KLVVPPS--DSIIKKCEETLQGCKLISRAVKTALAETIDMGLWFGEQVWLYLVD---FVE 290

Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI----GSALPLADKIFLDFGF 384
                K  L K L   EE  I R      K F+E+  +      G  +P+         F
Sbjct: 291 TKRLKKKALGKQLSDDEELAIDR-----LKIFVEDWKNNKYSDNGPRIPV---------F 336

Query: 385 DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT 444
           D +   D  +   KL ELL+   ++ KS  V  +IFVER   A  +  F+K +  L ++ 
Sbjct: 337 DSTDVTDKVF---KLLELLK--ATYRKSDSVRTVIFVERKATAFTLSLFMKTLN-LPNIR 390

Query: 445 VAYLTGSTTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501
                G   S     ++T + QK+ L  F+ GK N+L AT V EEG+ VP+C+ VIRF++
Sbjct: 391 AHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNI 450

Query: 502 PKTVSSYIQSRGRARQHNSQFILML--------ERGNLKQRNKLFDIIR-SERSVTDTAL 552
            +TV+ Y+QSRGRAR   S+F++ L        ER   +++N  F +   S  ++ D+ +
Sbjct: 451 CRTVTQYVQSRGRARAMASKFLIFLNTEELLIHERILHEEKNLKFALSELSNSNIFDSLV 510

Query: 553 SRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYK 612
             + E              Y V  TGA +T   +V+L++ +C  L  D Y    P F  +
Sbjct: 511 CEERERV-------TDDIVYEVGETGALLTGLYAVSLLYNFCNTLSRDVYTRYYPTFTAQ 563

Query: 613 SAEEAYEC-ELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
                + C E+ LP         G  +++   +KQ      C  L ++G ++ HL P
Sbjct: 564 PCLSGWYCFEVELPKACKVPAAQGSPAKSIRKAKQNAAFIMCLDLIRMGLIDKHLKP 620



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 154/401 (38%), Gaps = 98/401 (24%)

Query: 1017 VPIS--VVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCES 1074
            +P+S  +  S  L+PS++  +E+L++AS   E      +   I ++   +ALT+     +
Sbjct: 872  LPVSRHLKNSALLIPSILYHIENLLVASSFIEHFRLDCK---IDTAC--QALTSAESQLN 926

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
            F  +RLE  GD  LK   S  +FL +P   E QL   R   + N  L+K+  D +L  Y 
Sbjct: 927  FDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYA 986

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
              +  + R W   G        C   V                            + +  
Sbjct: 987  LSTPLEIRHWCPYGFQKSTSDKCRYAV---------------------------LQKLSV 1019

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEI 1254
            K IAD  EA IGA  +  GL +AL + K L +   L++S  D+      L +Y   +  +
Sbjct: 1020 KRIADMVEASIGACLLDSGLDSALKICKSLSVGL-LDISNWDEWNNYFDLNTYADSLRNV 1078

Query: 1255 K-----DIESKIGYEFTVKFLLQEAITHASVQ------------EF------------YC 1285
            +      IE  IGY F  K LL  A  H S+             EF            Y 
Sbjct: 1079 QFPYSSYIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYL 1138

Query: 1286 YQ------------------------------NLYKHLQHCSTLLLSQITEYVKSFPKPG 1315
            Y+                              NL+K++QH S  +   I EY +      
Sbjct: 1139 YKKYPNATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFR 1198

Query: 1316 ETTDSGP----SMKAPKALGDLLESIVGAVLIDTKLNLDEV 1352
            ET    P     + +PK + D LE+++ A+ +D+  +L  +
Sbjct: 1199 ETASENPWFWFEIDSPKFISDTLEAMICAIFLDSGFSLQSL 1239


>gi|426194802|gb|EKV44733.1| hypothetical protein AGABI2DRAFT_209093 [Agaricus bisporus var.
           bisporus H97]
          Length = 1524

 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 207/744 (27%), Positives = 339/744 (45%), Gaps = 114/744 (15%)

Query: 33  DGPSSSTNSINFIP--RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN 90
           D PS+  N    IP  R YQ ++ E + + N I  ++TG+GKT IAV+ IK   +   S 
Sbjct: 4   DTPSAEDN----IPTTRGYQQEMLEESIKHNIIIAMDTGSGKTHIAVLRIKHEVEREPS- 58

Query: 91  GFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS-QCWQKEINKNDVLV 149
              K   F APTV L  QQ  VI+ H    V    GA   D+W S + W++ +N + V+V
Sbjct: 59  ---KAAWFFAPTVALCAQQKAVIQTHLPVSVGLVSGALEPDQWKSAELWERVLNTHRVIV 115

Query: 150 MTPQILLDALRKAFLSL-DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPK------ 202
            TPQ+ LDALR A++ L   +  +V DE HHATG+HPY +IM +FYH+ + +P       
Sbjct: 116 STPQVFLDALRHAYIDLGKDISLLVFDEAHHATGDHPYARIM-DFYHRIEERPANLRLYG 174

Query: 203 --------VFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI-EDKTEMEVFVPSA 253
                   V G+TASP+    V  + +       LE  LD  +      + E+  FV   
Sbjct: 175 ISQVSRPYVLGLTASPIYGGDVVKSFNM------LEKNLDCIIRAPRRTRAELAQFVHRP 228

Query: 254 KESCRFYDQ---SKFCG-----SDLKGKLEVSWSKFDASLSKLQGS---QLNCYKDMDDK 302
                 Y+Q   + F       S++   L++    +  SL +   +     + Y  +D K
Sbjct: 229 IFQHVMYEQWPDAPFSTNLTVISNIVRSLQIEKDPYVISLRQKLATVKPLTSEYFRLDQK 288

Query: 303 HK-TLRKQ-------LSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354
              T+R Q       L D+       L +LG   A   V    E   KA+E    +  ++
Sbjct: 289 LSITIRTQKTFVFKGLRDFERAASDILLDLGPWAADWYVWRIAE---KAREAANPF--NN 343

Query: 355 LQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQ 414
           +   +   E  H+    L L D   L     Y +   +G  S KL  L++  L+    T+
Sbjct: 344 IMASWKDTEKSHL----LKLLDSAVLT-PVSYGEEDIMGDCSDKLQRLIETLLNEKMETE 398

Query: 415 -----VLCIIFVERIIAAKVVERFVKKVPFLTHL-TVAYLTGSTTS---------VDALT 459
                   ++FV+R      +   +   PF  ++  + +L G++ S            L 
Sbjct: 399 KRDEVYSGLVFVQRRDTVIALAEVLNNHPFTKNIFRIGFLLGTSDSSRRHSFLDISRKLA 458

Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
            + Q+E +  FR G +NL+ AT V EEG+ +  C  VIR+DLP+ ++S+ QSRGRAR+  
Sbjct: 459 RETQEETMAEFRSGDLNLIIATAVAEEGIDIQACGSVIRWDLPQNMASWAQSRGRARKRR 518

Query: 520 SQFILMLERGNLKQRN-KLFDIIRSERSVTDTALSRDPEACF-LKACTYVKTKS-----Y 572
           S F LM   G+  ++N + ++++  ER + +  L  DP     ++  + + T       +
Sbjct: 519 STFTLMFANGSQDEQNVRKWELL--ERRMVE--LYNDPARDLAMETESLMDTDDDVDEIF 574

Query: 573 IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE-------EAYECELTLP 625
            VEST AS +  S+++ +  +C ++P   +   +PI++    +       + +   L LP
Sbjct: 575 FVESTRASTSVHSAISHLAHFCAVIPIRAHVDIRPIYEIDPPDMPLAWHADPHRSNL-LP 633

Query: 626 SNAPFQTIV--------------GPTSRNKNLSKQL-VCLEACEKLHQVGALNDHLLP-- 668
            N P+ + V               P   +  +S    V  EA   L++ G LN++LLP  
Sbjct: 634 YNGPWGSKVILPRCLPLACREFSVPMKYSSKVSAHRHVAFEAYVGLYKAGLLNENLLPLT 693

Query: 669 SVEEPSENNLISKKNESLPGAGTT 692
           SV  P +++++    +    +G T
Sbjct: 694 SVVVPQDDDILEMLKDVEKRSGMT 717



 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 148/335 (44%), Gaps = 38/335 (11%)

Query: 965  PLLRLKQSHNPHNLLV--NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVV 1022
            PLL +K  H   N L+     D G S    K          +V++ PE      +  + V
Sbjct: 925  PLLVVKPFHPRCNFLIPTKPRDPGSSAPEIK----------YVYLMPEFTGITLISSTEV 974

Query: 1023 KSLYLLPSVMQRLESLMLASQLREEINCHSRNFH-IPSSLILEALTTLGCCESFSMERLE 1081
            +  +LLPSV++ LE  +  + LR  +   S +   IP +L+  A+T     E ++ +RLE
Sbjct: 975  EYAFLLPSVLRSLEINLTMASLRSNLFMPSPSLQDIPLALLSNAMTASSAGEKYNYQRLE 1034

Query: 1082 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
             LGD+VLK+ V+  + + YP  HEG L+ ++   V N  L K   + +L  +I       
Sbjct: 1035 TLGDTVLKFLVALQVLVEYPLWHEGYLTKKKDHTVANVNLAKENINHRLYRWIIKEIMLG 1094

Query: 1142 RRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM------------GH 1189
            R+W       L P P          PL  +   ++  +VV +  ++             +
Sbjct: 1095 RKWRPRYSTKLLP-PT--------TPLSEEKIVEELLMVVDEGAELSSKGAAKKKKKSKN 1145

Query: 1190 RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADL--EVSLVDDCITRASLRSY 1247
            + + +K +AD  E+LIGA Y+ GG        K  G+          + D +        
Sbjct: 1146 QGLSTKILADVVESLIGAAYIHGGFPLGYECTKLFGLGLRWLPPPERIKDFLGAVEPDKN 1205

Query: 1248 VPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE 1282
            +P  + +  +E  +GY F  K LL EA+THAS Q+
Sbjct: 1206 IP--SALYYVEKMLGYTFKHKVLLLEALTHASYQQ 1238


>gi|307198394|gb|EFN79336.1| Endoribonuclease dcr-1 [Harpegnathos saltator]
          Length = 1479

 Score =  201 bits (512), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 181/643 (28%), Positives = 302/643 (46%), Gaps = 83/643 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFL 99
           F PR YQ+ ++E A   N I  L TGAGKT IAVML+K    +I  +   NG  K  IF+
Sbjct: 8   FTPRAYQIDLYEKAVENNIIVYLPTGAGKTYIAVMLLKKFSGEIQMSYSKNG--KRSIFI 65

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
             TV LV QQ D IR HT    + Y G   VD W    W  E++ N VLVMT QI +D +
Sbjct: 66  VNTVALVRQQTDYIRRHTCLTCKGYSGDMKVDCWKEDQWILELDANQVLVMTAQIFVDTI 125

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF--YHKSDNKPKVFGMTASPVVRKGVS 217
              ++ LD +  I+ DECH A  NHP  +IM+ F  Y K   +P++  M+A+ ++   + 
Sbjct: 126 THGYIKLDRINLIMFDECHRAVNNHPMRQIMQLFEKYCKK-QQPRILAMSAT-LLNANIK 183

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
           S    E  I +LE T  ++V T++    ++ +  + KE+   YD      + +   + V 
Sbjct: 184 SD-KIESTIKDLEVTFQAKVATVKSTDCIQEYCTNPKENIIKYD------TYVAATVAVD 236

Query: 278 WSK-FDASLSKLQGSQLNCYKDMDDK--HKTLRK---QLSDYHAKILYCLDELGLICAYE 331
            ++  D S+S L+    +  K   D   H   RK   +L+     IL    + G+    +
Sbjct: 237 VNQIIDDSISILKNIIFDTDKLFMDSSPHFQPRKKSTKLTGIMKDILTTTIQAGIYAGNK 296

Query: 332 AVKICLEKVLKAQEECEIYRQSSLQCKYFLE------------EVLHVI-----GSALPL 374
           +V + L ++   ++ C+     ++  + FLE            +VLHVI        L +
Sbjct: 297 SVLLHLIQLEYLKKYCD-----NIVSRIFLEILIKTLFCMVHSKVLHVIFVLIKNRVLII 351

Query: 375 ADKIFLDFGFDYSKAVDL------------------GYISTKLHELLQLFLSFGKSTQV- 415
             +  +   +  ++ V +                   + S ++++L  L   F  +  + 
Sbjct: 352 FQQTNIILEYLITQLVRIRKLFDDAMRGCTELERIYKFSSDQMYKLFTLLKDFNANKLID 411

Query: 416 ---LCIIFVERIIAAKVVERFVKKVPF----LTHLTVAYLTGSTTSVDALTPKV------ 462
               CIIFV+     +V+   +K +         L   ++ G   S    T +V      
Sbjct: 412 QKFCCIIFVKERFMTQVLYHILKTLSMHDDQYHFLLPDFIVGCHNSPYKNTREVLCLAKW 471

Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
           QKEV++ FR G  N + ATDV++EG+ VP C+ V+R+DLP    +Y+QS+GRAR   S +
Sbjct: 472 QKEVMQRFRKGLSNCIVATDVVDEGIDVPLCALVVRYDLPTDYRAYVQSKGRARHGTSHY 531

Query: 523 ILMLERGN--LKQRNKLFDI--IRSERSVTDTALSRDPEACFLKACTYV-KTKSYIVEST 577
            +++ R +     R K F I  ++ +  +    +   P    ++   Y  +   Y V + 
Sbjct: 532 TVLVPRDDETFLSRYKDFKITELKMKTILIGNEVRSLPTDKEIENGLYQHEILPYTVSAA 591

Query: 578 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK-YKSAEEAYE 619
           G  +T ++ V++++RYC  L   K+ T  P++  YK++   Y+
Sbjct: 592 GIVLTENNVVSILNRYCNSLLRCKFVTLIPVWTLYKTSSNLYQ 634



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 122/261 (46%), Gaps = 33/261 (12%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            IL+ALTT  C + F++ERLE LGDS LK+  S  L+ T+P   EGQL+A +   + N  L
Sbjct: 1054 ILQALTTKMCHDMFNLERLETLGDSYLKFITSLFLYHTFPMLSEGQLTAIKGRIIGNRNL 1113

Query: 1122 HKLGTDRKLQGYIRDSAFDP-RRWVAPGQLSLRPVP-----CECGVDTL-EVPL-DGKFF 1173
            +  G ++ + G ++   F P   ++ P     RP+       +   + L E+P+ D +  
Sbjct: 1114 YYNGVNKGIPGRLKIDEFAPMSTFIVPAYTVFRPLQKTLLDQDVSSNILYELPVPDEERL 1173

Query: 1174 TQD------------------TKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLI 1215
            T D                   ++  G    +  + +  K I+D  EALIG Y    G+ 
Sbjct: 1174 TGDISASTSNTIQNTISQWSLAEIQTGMEHYLNIQIISDKAISDSIEALIGVYLRNTGIS 1233

Query: 1216 AALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE----IKDIESKIGYEFTVKFLL 1271
             A  ++KW GI  D+++  + +    ++    +   NE       IE ++GY+F  +  L
Sbjct: 1234 GAAKLLKWFGILPDIKIDELLNGTNSSNPIIGIGNPNEHMPWADSIEKRLGYKFNNRAYL 1293

Query: 1272 QEAITHA--SVQEFY-CYQNL 1289
             +A TH   SV     CYQ L
Sbjct: 1294 LQAFTHPSYSVNRITDCYQRL 1314



 Score = 46.2 bits (108), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 920  IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL 979
            +Y + ++ ++ +  S F     DD +T+ +Y+ EK+GI + +  QPLL +K      N +
Sbjct: 809  VYIVTQVCDDLTPTSLFPT---DDFETYTHYYEEKHGIKIQNLKQPLLEVKAISTKINCI 865

Query: 980  VNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLM 1039
               +   G  K  ++ +         H+ PEL   +  P         LPS++ R+  L+
Sbjct: 866  KPRSMKPGLSKRRRADV---LEDFEEHLIPELCRMICFPALYWLKASTLPSILHRITHLL 922

Query: 1040 LASQLREEI 1048
            +A  LRE I
Sbjct: 923  IAEDLRETI 931


>gi|195335297|ref|XP_002034311.1| GM19969 [Drosophila sechellia]
 gi|194126281|gb|EDW48324.1| GM19969 [Drosophila sechellia]
          Length = 1731

 Score =  200 bits (509), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 177/672 (26%), Positives = 319/672 (47%), Gaps = 61/672 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAPTV 103
           PR YQL++ +   +RN I  L TG+GKT +A++++K  +Q +     K  K  +F+  TV
Sbjct: 18  PRSYQLRLVDYLTKRNGIVYLPTGSGKTFVAILVLKRFSQDLDKPIAKGGKRALFMCNTV 77

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            L  QQ   +R +T+F+V  Y G +GVDEW    W +EI  N VLV T Q+ LD + +  
Sbjct: 78  ELARQQAVSVRRNTNFKVGFYVGEQGVDEWTRGKWSEEIENNQVLVGTAQVFLDMVTQKN 137

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAMDC 222
           ++L+ +  ++IDECHH T +HP+ + M+ F      N P+V G+T   V+ KG +     
Sbjct: 138 MALNSISVVIIDECHHGTRHHPFREFMRLFTIADQTNLPRVVGLTG--VLIKG-NEITKV 194

Query: 223 EGQISELESTLDSQVFTIEDKTEME-VFVPSAKES---CRFYDQ------SKFCGSDLKG 272
             ++ ELE T    + T+    E+E V + + K +     F  Q      ++F  + +K 
Sbjct: 195 ATKLKELEITYRGNIITVSGSKEIENVMLYATKPTEVMVSFPHQEQGPTVARFIIAQIK- 253

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
           +  VS    +  +  ++ S+ + +   D   K   KQL +     +Y L+E G+  A  A
Sbjct: 254 QFFVSLELMNIGVQPVRRSK-SLHSPRDSSKKGFVKQLFN---DFVYQLEEYGIYAASIA 309

Query: 333 -VKICLEKVLKAQE----ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY- 386
            + + +E  LK ++      ++  +++L      E + H++   L            D  
Sbjct: 310 IISLIVEFDLKRRQAETLSVKLMHRTALT---LCERIRHLLVQKLRDMTDDDDGPDDDVN 366

Query: 387 SKAVDLGYISTKLHEL---LQLFLSFGKSTQVLCIIFVERIIAAKVVE----RFVKKVPF 439
           ++ + + + + K+      L++  ++     + C++FVER    K +      ++   P 
Sbjct: 367 TENIIMNFSTPKIQRFLMSLKVSFAYKDPKDICCLVFVERRYTCKCIYGLLLNYINSTPE 426

Query: 440 LTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
           L + LT  ++ G ++ S D    L  K QK  ++ FR G  NL+  + V+EEG+ V  C+
Sbjct: 427 LRNVLTPQFMVGRNSISPDFGNVLERKHQKSAIQKFREGNANLMICSSVLEEGIDVQACN 486

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILM-LERGNLKQRNKLFDIIRSERSVTDTALS 553
           +VI  D  KT + Y+Q++GRAR   ++F++   ER   K   ++     +   + +    
Sbjct: 487 HVIILDHLKTFNMYVQTKGRARSPEAKFVVFTTERDREKTCQQICQYRNAHDEIAEYLKE 546

Query: 554 R-----DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPI 608
           R      PE   ++       K Y  E  GA +   +++ L+HRYC+ +P+D +    P 
Sbjct: 547 RVLEQAMPELYEIEKHFQDVIKPYTNE-YGAVLLPSNALTLLHRYCQKIPTDAFGFVIPW 605

Query: 609 FKY-----------KSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEACEKL 656
                          +A++ +   + +P N   + TI      N  ++K     +AC  L
Sbjct: 606 INLLEEGERNKLFGVNAKDKHVVSINMPLNCILRDTIYSDPMDNARIAKISAAFKACLAL 665

Query: 657 HQVGALNDHLLP 668
           + +G L++  LP
Sbjct: 666 YSLGELSEKFLP 677



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 101/274 (36%), Gaps = 65/274 (23%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L A+T     + F MERLE+LGDS LK + + +L   Y   +EG L+  +S  V N  L
Sbjct: 1206 FLAAITASSATDVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNL 1265

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAP----------------------GQLSLRPVP-- 1156
                 D  +   +    F PR  WV P                      G  +LR +   
Sbjct: 1266 LYCLADTDIPKKLNTILFTPRYTWVPPSISLPHNVLALWREKPEFANMIGPHNLRDLALD 1325

Query: 1157 ---------------------CECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSK 1195
                                 C     +     DG  F+ +    VG+        + +K
Sbjct: 1326 DEESLVKGNCSDIKYNCFVAGCRANAGSF---YDGSDFSSEVNYCVGQVT------IANK 1376

Query: 1196 TIADCAEALIGAYYVGGGLIAALYMMKWLGI-DADLEVSLVDDCITRASLRSYVPRINEI 1254
             IAD  EAL+G      GL  A  M+++  I  +D++  L +        ++    +N  
Sbjct: 1377 VIADTLEALLGVIVKNYGLQHAFKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTT 1436

Query: 1255 K---------DIESKIGYEFTVKFLLQEAITHAS 1279
            +          +E  +GY F  +  L +A+TH S
Sbjct: 1437 EIDGFLINHSHLEHNLGYTFKDRRYLLQALTHPS 1470



 Score = 42.7 bits (99), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 8/136 (5%)

Query: 1306 EYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLI---DTKLNLDEVWRIFKPILSP 1362
            E  +  P  GE   S  ++  PK LGD+LE+++ A+ +   D +   D ++R+F+P L  
Sbjct: 1598 EAEQGVPPKGEFNMST-NVDVPKTLGDVLEALIAAIYLDCRDLRRTWDVIFRLFEPELQE 1656

Query: 1363 IVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRK 1422
                  + + P+R+LIE   +   F          MV  +     K + + G G  +++ 
Sbjct: 1657 FTR--NVPINPIRQLIEHKHAKPVFSSPIMDGDTLMVGCQFTCMEKSIKVYGFGSNKNQ- 1713

Query: 1423 AAKGKAASQLLKKLEV 1438
             AK  AA   L++L +
Sbjct: 1714 -AKLSAAKHALQRLSI 1728


>gi|443725259|gb|ELU12939.1| hypothetical protein CAPTEDRAFT_223153 [Capitella teleta]
          Length = 1651

 Score =  200 bits (509), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 208/778 (26%), Positives = 342/778 (43%), Gaps = 117/778 (15%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN---GFKKLIIFLA 100
           F PR YQ+ + E A + NTI  L   + KT IAVMLIK++A  ++     G K+  +FL 
Sbjct: 14  FTPRTYQVALLENALKHNTIVCL--ASRKTFIAVMLIKELAHQVRQPLQLGGKR-TLFLV 70

Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
            +   V  Q  V+ +HTD  V E      V +W     Q+E  K+ VLV++ Q+ ++ L 
Sbjct: 71  YSDDDVEAQVKVLGLHTDLSVGECCADSTVAQW-----QEEFVKHQVLVISAQVFVEILL 125

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN--KPKVFGMTASPVVRKGVSS 218
           +    +     ++ D+C HA  +  Y KIM +FY    N  +P++ G+T S ++ + +S 
Sbjct: 126 QGAAQISQTNLLIFDDCQHAIEDPAYEKIM-QFYTDQTNGQRPRILGLTTS-ILSEQISC 183

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKES---CRFYDQSKFCGSDLKGKLE 275
            +  E  ++ LE  L S V T  D   ++++    +ES   C  YD       D  G + 
Sbjct: 184 PIALEKTLATLEKVLHSTVETSSDIINIDLYGNKPQESVIECVAYD-------DPTGLVA 236

Query: 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKI 335
              +  D+ ++ L     +C    ++K      +      +I+  L ELG  CA +   I
Sbjct: 237 EFSTILDSCMAFLD----DCNIAFEEKDPRAIPKTVVTECQII--LRELGPWCAGKVAHI 290

Query: 336 CLEKVLKAQEE-----CEIYRQ----------SSLQCKY-----FLEEVLHVIGSALPLA 375
            L+++ K  E      C ++ Q          S+++  Y      LEE L ++   +   
Sbjct: 291 FLKQLSKLLEHETEKMCRMFMQYIFTQLTIIHSTVENVYDNQILCLEEFLQLMSPRIIQL 350

Query: 376 DKI-----------------FLDFGFDYSKAVDLG----------YISTKLHELLQLFLS 408
            KI                 F+D  +D   + D+            + +    L +  ++
Sbjct: 351 IKILHNYKPDDNFVIMGNDNFMDAIYDSEGSTDISDEENSEPKPQQVHSTTSNLSKRAVT 410

Query: 409 FGK-----STQVLC-IIFVERIIAAKVVERFVKKVP--------FLTHLTVAYLTGSTTS 454
             +       + LC ++FVER   A V+ + + ++           +H       G T +
Sbjct: 411 HHRRQDNPEDESLCGVVFVERRHTAFVLNKLIVELCNWDTDLFFVQSHHICGGAAGPTNN 470

Query: 455 VDALTP--KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
               TP  K Q+E+L+ FR   +NLL +T V+EEG+  P C+ V++FD P +  SY+QS+
Sbjct: 471 SSQQTPLYKKQEEILKRFRQKDLNLLVSTSVLEEGIDFPKCNLVVKFDAPTSYRSYVQSK 530

Query: 513 GRARQHNSQFILMLERGN-------LKQRNKLFDIIRSE-RSVTDTALSRDPEACFLKAC 564
            RAR   S++ ++ E  N       L     + +I+ S+     +  L  D +A      
Sbjct: 531 ARARALKSKYYILTEPTNQGPFHTTLSTYKGIENILISKCLQSRENPLRDDDDASLPDNF 590

Query: 565 TYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YEC 620
             V      V   GA VT  S++ L++RYC  LPSD +    P  + ++  EA    +  
Sbjct: 591 MPV-----YVSPGGAKVTMSSAIALVNRYCGKLPSDAFTHLTPKCQVQAINEADQETWRA 645

Query: 621 ELTLPSNAPF-QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVE-----EPS 674
            L LP N+P  + I G    ++ L+   V L+ CE LHQ G L+DHLLP  +     E  
Sbjct: 646 TLQLPINSPIKRPIYGEAMPSRKLAMMAVALKTCEILHQQGELDDHLLPIGKEMIKYEDE 705

Query: 675 ENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTE 732
           EN     + +     GTTKRK+ +       L G+        L+ +     C I  E
Sbjct: 706 ENEWEDHETQGHARPGTTKRKQYYLKKTASTLLGQPQPNEPCHLYIFDTRLTCPITEE 763



 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 130/298 (43%), Gaps = 62/298 (20%)

Query: 1054 NFHIPSS-LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARR 1112
            NF  PS  LIL+ LT     + F++ERLE +GDS LK+A++ +L+  YP  HEG+LS  R
Sbjct: 1125 NFIGPSPCLILQTLTMSNANDFFNLERLETIGDSFLKFAITVYLYCEYPGIHEGKLSYLR 1184

Query: 1113 SWAVCNSTLHKLGTDRKLQGYIRDSAFDP-RRWVAPGQ----------LSLR----PVPC 1157
            S  V N  L+KLG  + L   +    F+P   W+ PG           L++R    P P 
Sbjct: 1185 SKQVSNYNLYKLGKKKGLPDCMVAVKFEPTENWLPPGYVIRKEGAYKGLNVRIASIPAPL 1244

Query: 1158 ------ECGVDTLEVPLDGKF--FTQDTKVVVG------KPCDMGHRW----------MG 1193
                  E G    E   DG+   FT++ +          K  D+ H            + 
Sbjct: 1245 LAPAFNESGSKKEEQLPDGQMEKFTKELEECTKAEDEKLKGSDIPHMLIPYNLQTQHSLP 1304

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDD---------------- 1237
             K+IAD  EALIG Y V  G  AAL  M WLG+     V   D                 
Sbjct: 1305 DKSIADGVEALIGCYLVTCGQRAALQFMSWLGLRVLPNVKPADKNNLAMSGFSCLPPPPS 1364

Query: 1238 -CITRASLRSYVPR--INEIKDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
              +T  S    V +  ++  ++ E KI Y+F  +  L +A THAS        CYQ L
Sbjct: 1365 PLLTHVSNSEDVLKHLLDGYEEFEEKICYKFRDRSYLLQAFTHASYHYNTVTDCYQRL 1422



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 14/120 (11%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELC 1381
            ++ PKALGD+ ES+ GA+ +D+ ++LD VW+++  ++ P +      +P  P+REL+E+ 
Sbjct: 1521 IEIPKALGDIFESVAGAIYLDSGMSLDTVWQVYYRMMKPQIDAFTERIPKSPVRELLEME 1580

Query: 1382 DSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLE 1437
                 F K   T+ G     ++R+    V +VG+G      R+ + AK  AA + LK ++
Sbjct: 1581 PETAKFEKPERTMDG-----KIRVT---VNVVGKGNFRGIGRNYRIAKSAAAKRALKHIK 1632


>gi|119487463|ref|XP_001262524.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181]
 gi|158705692|sp|A1D9Z6.1|DCL2_NEOFI RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease dcl2; Includes: RecName:
           Full=ATP-dependent helicase dcl2
 gi|119410681|gb|EAW20627.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181]
          Length = 1388

 Score =  200 bits (509), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 186/674 (27%), Positives = 303/674 (44%), Gaps = 76/674 (11%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK---DIAQAIKSNGFKKLIIFLA 100
           + PR YQL++ E + + N I  ++TG+GKT IAV+ IK   DI          KL+ FLA
Sbjct: 14  YQPRNYQLEMLEASMKENIIVAMDTGSGKTHIAVLRIKAELDICPP------DKLVWFLA 67

Query: 101 PTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQILLDA 158
           PTV L  QQ++VI  +          G   V+ W  Q  W   +N   V+V T  +L DA
Sbjct: 68  PTVALCIQQHEVIASNLPAVRTRTLTGLDKVELWTEQSIWDAVLNGYRVIVSTHAVLADA 127

Query: 159 LRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKVFGMTASPVV 212
           L   F+ +  +  ++ DE HH T  H   KIM++FYH +  K      P++ G+TASPVV
Sbjct: 128 LSHGFVKMSRLALLIFDEAHHCTRRHAANKIMRDFYHPTLTKSGPGAVPRIMGLTASPVV 187

Query: 213 RKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCG---- 267
           R           ++  +ES LD+   T    + E+  F         +Y  +   G    
Sbjct: 188 RSN-------HQELLTVESNLDAVCRTPRVHRQELVKFTHRPHLQQIWYTPTDPAGFKSA 240

Query: 268 SDLKGKLEVSWSKFDAS----LSKLQGSQLN---CYKDMDDKHKTLRKQLSDYHAKILYC 320
           S   G L  +W   D      + +L+ S L+     K +       R+QL  +  +  + 
Sbjct: 241 SQTLGALYHAWETLDIGDDPYIQRLRKSPLDDTALKKALLTGKTYCREQLRRFVDRSRHI 300

Query: 321 LDELGLICA----YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIG--SALPL 374
            +ELG   A    Y ++K   ++V          R S +   +   E  +++   S +P 
Sbjct: 301 FEELGEWAAEYYIYASIKQLGDRV----------RNSYMSGDWDEAEKAYLVDFLSKIP- 349

Query: 375 ADKIFLDFGFDYSKAVDLG--YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432
           A +I L          D G   IS K   LL  FL      +   +IFV++      +  
Sbjct: 350 ASEIQLALN-------DPGSFRISPKFESLLN-FLDSLDEREFSGLIFVKQRATVSAMTS 401

Query: 433 FVKKVP-----FLTHLTVAYLTGSTTSV---DALTPKVQKEVLESFRGGKVNLLFATDVI 484
            +   P     F     V +  GS +     D L  ++Q++ L+ FR G+ NL+ ATDV+
Sbjct: 402 LLSVHPCTRERFRCAAYVGWSNGSASKDILGDLLNMQLQRDTLDDFRSGRKNLIIATDVL 461

Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR-NKLFDIIRS 543
           EEG+ +  CS V+ +D P  + S++Q RGRAR+  S F +M    +     +K  D+ ++
Sbjct: 462 EEGIDISACSVVVCYDKPPNLKSFVQRRGRARRKQSTFAIMFPTDDASADVSKWQDLEQA 521

Query: 544 ERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYY 603
                     +      L++      +   VEST A +T D ++  +H +C +LP   Y 
Sbjct: 522 MIEAYQDDERQLQSVSALESLDEEVMERLTVESTSAVLTADMAMAHLHHFCAVLPPQPYA 581

Query: 604 TPKPIFKYKSAEEA-YECELTLPS--NAPFQTIVGPT-SRNKNLSKQLVCLEACEKLHQV 659
             +P+F +++ E+   +  + LPS  +   +   G    R +  + +    +A + L++ 
Sbjct: 582 DMRPVFSFETNEDGLLKGTVILPSCVHPKVRRTEGRRWWRTERAAMKETAFQAYKALYEF 641

Query: 660 GALNDHLLPSVEEP 673
           G +NDHLLP  + P
Sbjct: 642 GLVNDHLLPLTKRP 655



 Score =  103 bits (257), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 137/294 (46%), Gaps = 47/294 (15%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSS-LILEALTTLGCCESF 1075
            +P ++      + ++++RLE+ ++A++LRE I    R+    S+  I+ A++T       
Sbjct: 895  LPFTMAIFGLFISAIVERLETELIATRLRETI---LRDVGFKSTDHIITAISTPFAHALT 951

Query: 1076 SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIR 1135
            + +R E LGDS+LK++VSC LF  +P  HEG LS  R+  V N  L K   D  L  YI 
Sbjct: 952  NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRAMIVQNPRLAKAALDTGLDAYIV 1011

Query: 1136 DSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSK 1195
                  R+W AP                          ++  + V  K      R M +K
Sbjct: 1012 TKRIASRKWSAP------------------------LISEKLERVPAK------RQMSTK 1041

Query: 1196 TIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPR----- 1250
             +AD  EALIGA Y+ GG   A   ++ L  + +L    VD   TR + RS  P      
Sbjct: 1042 VLADVVEALIGAAYMDGGHATAQACIRRLLPEINLHA--VD---TRTATRSVAPESARHM 1096

Query: 1251 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQI 1304
            +NE   ++  IGY F  + LL EA+TH S  ++      Y+ L++    +L  +
Sbjct: 1097 MNE--RLKDHIGYTFEDESLLVEALTHPSC-DYDSTTQSYQRLEYLGDAVLDMV 1147


>gi|406863987|gb|EKD17033.1| RNase3 domain-containing protein [Marssonina brunnea f. sp.
           'multigermtubi' MB_m1]
          Length = 1477

 Score =  199 bits (506), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 195/682 (28%), Positives = 313/682 (45%), Gaps = 101/682 (14%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQ ++ + + +RN I  ++TG+GKT IAVM ++     I+ +   ++I FLAPTV L
Sbjct: 69  PRPYQQEMLQESLKRNIIVAMDTGSGKTHIAVMRMQ---HEIERSSPNQIIWFLAPTVDL 125

Query: 106 VHQQYDVIRVH-TDFEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQILLDALRKAF 163
             QQ+  I+   T  + +   G  GVD W  Q  W   +    ++V T QILLDAL   F
Sbjct: 126 CDQQFAYIQSQITAVQSKFLRGDDGVDRWTEQTHWNAVLKNVKIVVSTYQILLDALSHGF 185

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--KSDN--KPKVFGMTASPVVRKGVSSA 219
           +S++ +  IV DE H+   +H   KIM  FYH  K+ N   P++ G+TASPV+R    S 
Sbjct: 186 VSMETLALIVFDEAHNCVKSHAGAKIMTNFYHGRKASNLGVPRILGLTASPVMRSDPRS- 244

Query: 220 MDCEGQISELESTLDSQVFT-IEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK----L 274
                 + ++E  LD+   T  + ++E+ + V   K     Y  +   GS+   K    L
Sbjct: 245 ------LVKIEEVLDAICRTPSKHRSELRLQVKLPKLVTVLYQTAPQAGSEGHTKTMKTL 298

Query: 275 EVSWSKFDASLSKLQGSQLNCYKDMDDK-----------HKTL-RKQLSDYHAKILYCLD 322
           E ++S  + +        L   KD  +K           H T    Q+  +H      L 
Sbjct: 299 EDAFSNMEVTADPWY---LYLSKDTSEKGRKKFDRLRINHNTWCHSQMKSFHTTATKILR 355

Query: 323 ELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHV--IGSALPLADKIFL 380
           +LG   A   V   + K+ K       +   S   K    E LH+  +   + L+ +  L
Sbjct: 356 DLGAWAADYYVSQVIRKLTKVANGSATHTDLSDMSK---AEKLHLTKVLQQVELSQRSCL 412

Query: 381 DFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL 440
             GF+     DL  +S K+ +L+ + L+  +      I+FV+    A +  + +K     
Sbjct: 413 --GFE-----DLHLLSDKVTKLIDVLLN--EPASFSGIVFVQVRDLATLDRQSMK----- 458

Query: 441 THLTVAYLTGSTTSV-----DALTPKV---------------QKEVLESFRGGKVNLLFA 480
           T+LT    TG++ S      D  TP V               QK  L  F+ G++NL  A
Sbjct: 459 TYLT----TGASDSSHPAPSDIGTPLVRARVRNISDLIDLNEQKHTLSRFKSGQINLAIA 514

Query: 481 TDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE--RGNLKQRNKLF 538
           T V+EEG+ VP C+ VI F  P  + S++Q RGRAR  +S+ +L+ +   G + +  KL 
Sbjct: 515 TSVLEEGIDVPACNTVICFQAPANIKSFVQRRGRARHRDSRLVLLSDYADGKVVEWKKLE 574

Query: 539 DIIR-----SERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRY 593
           + +R       R++    L+ D E            + + VE+TGA +  D++V  ++ +
Sbjct: 575 EDMRKMYEDERRTLQSLLLAEDSEED--------DGRVFRVETTGALLDMDNAVAHLYHF 626

Query: 594 CEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTI-----VGPTSRNKNLSKQLV 648
           C  +P   Y   +P F           E+ LP +   QT+     + P    KN  K   
Sbjct: 627 CAKIPQSAYVDRRPEFTCCEESGLSRAEVVLPLSVD-QTVRVAQSLRPWQSEKNAIKD-A 684

Query: 649 CLEACEKLHQVGALNDHLLPSV 670
             +A   L++ G +ND+LLP++
Sbjct: 685 AFQAYIALYKAGLVNDNLLPNL 706



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 113/266 (42%), Gaps = 44/266 (16%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPS-SLILEALTTLGCCESFSME------- 1078
             +PS+M RLE   LA+ L + I    ++  I   + I+ A+T     +    E       
Sbjct: 955  FIPSIMYRLEKSFLATLLTKTI---LKDIQIQDLNGIVTAITASSASDESHYENIKYEAN 1011

Query: 1079 --RLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
              RLE LGD++LK   S  L   YP  HEG L+  +   V NS L+    +  L  +I  
Sbjct: 1012 YQRLEFLGDTILKMCTSIQLMAQYPLWHEGYLTELKGRIVSNSCLYAAAIENGLDRFIIT 1071

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
              F   +W        RP   +   D L +  D           V KP     R M SK 
Sbjct: 1072 KKFSGHKW--------RPTYVD---DLLAMGTDH----------VDKP-----RTMSSKI 1105

Query: 1197 IADCAEALIGAYYVGG--GLIAALYMMKWLGIDADLE-VSLVDDCITRASLRSYVPRINE 1253
             AD  EALIGA Y  G  G    L  +K      D + ++     + + +    +P+   
Sbjct: 1106 PADVVEALIGACYEDGEMGFEKPLQCLKIFIPRIDWQPLAQSQSLLFQRAPNVELPQTLR 1165

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHAS 1279
            I  +E  +GYEF  K LL EA+THAS
Sbjct: 1166 I--LEDMLGYEFNNKGLLVEAVTHAS 1189


>gi|409076508|gb|EKM76879.1| hypothetical protein AGABI1DRAFT_77978 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 1528

 Score =  199 bits (506), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 208/744 (27%), Positives = 340/744 (45%), Gaps = 114/744 (15%)

Query: 33  DGPSSSTNSINFIP--RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN 90
           D PS+  N    IP  R YQ ++ E + + N I  ++TG+GKT IAV+ IK   +   S 
Sbjct: 4   DTPSAEDN----IPTTRGYQQEMLEESIKHNIIIAMDTGSGKTHIAVLRIKHEVEREPS- 58

Query: 91  GFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS-QCWQKEINKNDVLV 149
              K   F APTV L  QQ  VI+ H    V    GA   D+W S + W++ +N + V+V
Sbjct: 59  ---KAAWFFAPTVALCAQQKAVIQTHLPVSVGLVSGALEPDQWKSAELWERVLNTHRVIV 115

Query: 150 MTPQILLDALRKAFLSL-DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPK------ 202
            TPQ+ LDALR A++ L   +  +V DE HHATG+HPY +IM +FYH+ + +P       
Sbjct: 116 STPQVFLDALRHAYIDLGKDISLLVFDEAHHATGDHPYARIM-DFYHRIEERPANLRLYG 174

Query: 203 --------VFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI-EDKTEMEVFVPSA 253
                   V G+TASP+    V  + +       LE  LD  +      + E+  FV   
Sbjct: 175 ISQVSRPYVLGLTASPIYGGDVVKSFNM------LEKNLDCIIRAPRRTRAELAQFVHRP 228

Query: 254 KESCRFYDQ---SKFCG-----SDLKGKLEVSWSKFDASL-SKLQGSQ--LNCYKDMDDK 302
                 Y+Q   + F       S++   L++    +  SL  KL  ++   + Y  +D K
Sbjct: 229 IFQHVMYEQWPDAPFSTNLTVISNIVRSLQIEKDPYVISLRQKLATAKPLTSEYFRLDQK 288

Query: 303 HK-TLRKQ-------LSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354
              T+R Q       L D+       L +LG   A   V    E   KA+E    +  ++
Sbjct: 289 LSITIRTQKTFVFKGLRDFERAASDILLDLGPWAADWYVWRIAE---KAREAANPF--NN 343

Query: 355 LQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQ 414
           +   +   E  H+    L L D   L     Y +   +   S KL  L++  L+    T+
Sbjct: 344 IMASWKDTEKSHL----LKLLDSAVLT-PVSYGEEDIMCDCSDKLQRLIETLLNEKMETE 398

Query: 415 -----VLCIIFVERIIAAKVVERFVKKVPFLTHL-TVAYLTGSTTS---------VDALT 459
                   ++FV+R      +   +   PF  ++  + +L G++ S            L 
Sbjct: 399 KRDEVYSGLVFVQRRDTVIALAEVLNNHPFTKNIFRIGFLLGTSDSSRRHSFLDISRKLA 458

Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
            + Q+E +  FR G +NL+ AT V EEG+ +  C  VIR+DLP+ ++S+ QSRGRAR+  
Sbjct: 459 RETQEETMAEFRSGDLNLIIATAVAEEGIDIQACGSVIRWDLPQNMASWAQSRGRARKRR 518

Query: 520 SQFILMLERGNLKQRN-KLFDIIRSERSVTDTALSRDP-EACFLKACTYVKTKS-----Y 572
           S F LM   G+  ++N + ++++  ER + +  L  DP     ++  + + T       +
Sbjct: 519 STFTLMFANGSQDEQNVRKWELL--ERRMVE--LYNDPARDLAMENESLMDTDDDVDEIF 574

Query: 573 IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE-------EAYECELTLP 625
            VEST AS +  S+++ +  +C ++P   +   +PI++    +       + +   L LP
Sbjct: 575 FVESTRASTSVHSAISHLAHFCAVIPIRAHVDIRPIYEIDPPDMPLAWHADPHRSNL-LP 633

Query: 626 SNAPFQTIV--------------GPTSRNKNLSKQL-VCLEACEKLHQVGALNDHLLP-- 668
            N P+ + V               P   +  +S    V  EA   L++ G LN++LLP  
Sbjct: 634 YNGPWGSKVILPRCLPLACREFSVPMKYSSKVSAHRHVAFEAYVGLYKAGLLNENLLPLT 693

Query: 669 SVEEPSENNLISKKNESLPGAGTT 692
           SV  P +++++    +    +G T
Sbjct: 694 SVVAPQDDDILEMLKDVEKRSGMT 717



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 151/328 (46%), Gaps = 24/328 (7%)

Query: 965  PLLRLKQSHNPHNLLV--NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVV 1022
            PLL +K  H   N L+     D G S    K          +V++ PE      +  + V
Sbjct: 925  PLLVVKPFHPRCNFLIPTKPRDPGSSAPEIK----------YVYLMPEFTGITLISSTEV 974

Query: 1023 KSLYLLPSVMQRLESLMLASQLREEINCHSRNFH-IPSSLILEALTTLGCCESFSMERLE 1081
            +  +LLPSV++ LE  +  + LR  +   S +   IP +L+  A+T     E ++ +RLE
Sbjct: 975  EYAFLLPSVLRSLEINLTMASLRSNLFMPSPSLQDIPLALLSNAMTASSAGEKYNYQRLE 1034

Query: 1082 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
             LGD+VLK+ V+  + + YP  HEG L+ ++   V N +L K   + +L  +I       
Sbjct: 1035 TLGDTVLKFLVALQVLVEYPLWHEGYLTKKKDHTVANVSLAKENINHRLYRWIIKEIMLG 1094

Query: 1142 RRWVAPGQLSL----RPVPCECGVDTLEVPLD-GKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
            R+W       L     P+  E  V+ L + +D G   +  +K    K  +  ++ + +K 
Sbjct: 1095 RKWRPRYSTKLLPPTTPLSEEKIVEELLMVVDEGAELS--SKGAARKKKNSKNQGLSTKI 1152

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADL--EVSLVDDCITRASLRSYVPRINEI 1254
            +AD  E+LIGA Y+ GG        K  G+          + D +        +P  + +
Sbjct: 1153 LADVVESLIGAAYIHGGFPLGYECTKLFGLGLRWLPPPERIKDFLGAVEPDKNIP--SAL 1210

Query: 1255 KDIESKIGYEFTVKFLLQEAITHASVQE 1282
              +E  +GY F  K LL EA+THAS Q+
Sbjct: 1211 YYVEKMLGYTFKHKVLLLEALTHASYQQ 1238


>gi|358370394|dbj|GAA87005.1| dicer-like protein 2-1 [Aspergillus kawachii IFO 4308]
          Length = 1396

 Score =  199 bits (505), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 179/665 (26%), Positives = 300/665 (45%), Gaps = 70/665 (10%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           + PR YQ+++FE + + N I  + TG+GKT IA++    I + ++SN   KLI FL PTV
Sbjct: 17  YRPRSYQVEMFEASLKENIIVTMGTGSGKTHIALL---RIMKELESNP-HKLIWFLTPTV 72

Query: 104 HLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRK 161
            L  QQ+  I  +              V+ W  Q  W   + +  V+V T  +L DA+  
Sbjct: 73  ALCLQQFKFISDNIPAVRARTLTSLDKVELWTEQPIWDAILKEMQVVVSTHAVLADAMSH 132

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKVFGMTASPVVRKG 215
            F+ +  +  I+ DE HH    HP  KIM++FYH +  +      PK+ G+TASPVVR  
Sbjct: 133 GFVKITQLGLIIFDEAHHCMRRHPANKIMEDFYHPALERHGAEAVPKILGLTASPVVRSN 192

Query: 216 VSSAMDCEGQISELEST---LDSQVFTIEDKTEME--VFVPSAKESCRFYDQSKFCGSDL 270
               +  E  +  +  T     S++ T   +  ++  +F P   +  +        GS  
Sbjct: 193 KQELLKVESNLDAVCKTPRIHRSELMTHTHRPHLQQILFTPVLLDDLQ-------AGSRT 245

Query: 271 KGKLEVSWSKF----DASLSKLQGSQLN---CYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
              L  +W+      D  + KL+ S L+     K ++        QL  +  + L+  +E
Sbjct: 246 LKALVNAWTSMRLEDDPYIKKLRKSPLDGRALQKVLESGKTYCNDQLKRFTTRSLHIFEE 305

Query: 324 LGLICAYEAVKICLEKV-LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
           LG   A   +   +E++  +A    +    +  +  Y L+     I S LP         
Sbjct: 306 LGEWAADYFIYASVEQLKTRADNSVDSMGWTDEEKAYLLD-----IVSKLPTP------- 353

Query: 383 GFDYSKA-VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT 441
             D + +  D   IS K   LL+ FL          +IF ++     V+E+ +   P   
Sbjct: 354 SIDLTPSDPDRIPISPKFRSLLE-FLDTKGEPNFSGLIFAKQRATVSVMEKLLSIHPVTK 412

Query: 442 HLT-----VAYLTGSTTSV--DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
           H       V +  G +  V  + L  ++Q++ L  FR G+ NL+ ATDV+EEG+ +  CS
Sbjct: 413 HRFRCASFVGWSGGGSKDVLGELLDARMQRDTLSEFRTGQKNLIIATDVLEEGIDISACS 472

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR-NKLFDIIRSERSVTDTALS 553
            V+ +D P  + S++Q RGRAR   S + +M    +     +K  D+ ++     +    
Sbjct: 473 VVVCYDKPPNLKSFVQRRGRARHRQSTYAIMFSTDDESSALSKWEDLEQAMIEAYEDDER 532

Query: 554 RDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKY-K 612
           R  +A  L+A      +   V STGA +T D++V  ++ +C +LP   Y + +P F + K
Sbjct: 533 RLRDAWALEAINEEVVERLEVPSTGAVLTADTAVAHLNHFCAVLPRQPYASNEPEFSFEK 592

Query: 613 SAEEAYECELTLPSNAPFQTIVGPTSR---------NKNLSKQLVCLEACEKLHQVGALN 663
              +     +TLPS       V P  R          +  +++    +A ++L++ G L+
Sbjct: 593 DDADLLRGTVTLPS------CVHPGVRRTQGQRWWQTERAARKEAAFQAYKRLYEFGLLS 646

Query: 664 DHLLP 668
           DHLLP
Sbjct: 647 DHLLP 651



 Score =  105 bits (263), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 121/270 (44%), Gaps = 45/270 (16%)

Query: 1031 VMQRLESLMLASQLREEINCHSRNFHIPS-SLILEALTTLGCCESFSMERLELLGDSVLK 1089
            ++ RLE+ ++A++L E I    R+    S   ++ A+T        + +R E  GDSVLK
Sbjct: 905  ILDRLEATLVATRLCETI---LRDLEFSSIRHVITAITAPSAQSLTNYQRYEFFGDSVLK 961

Query: 1090 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAP-- 1147
            + VSC LF  +P  HEG LS  R   V NS L +   D  L  +I +  F PR+W AP  
Sbjct: 962  FTVSCQLFFQHPNWHEGYLSQGRDEIVQNSRLARAALDAGLDAFIMNKMFTPRKWTAPLI 1021

Query: 1148 -GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
              ++SL P                                   R M +K +AD  EALIG
Sbjct: 1022 SEKISLTP---------------------------------KQRTMSTKVLADVVEALIG 1048

Query: 1207 AYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD--IESKIGYE 1264
            A Y+ GG  AA   +     + +LE   +D   T A         + + D  + + IGY 
Sbjct: 1049 ASYIDGGFAAAHACIHRFLPEVNLE--HIDRTTTTAPSTPEGTTKHTLNDDHLMTHIGYT 1106

Query: 1265 FTVKFLLQEAITHASVQEFYCYQNLYKHLQ 1294
            FT K LL E++TH S Q F      Y+ L+
Sbjct: 1107 FTHKSLLVESLTHPSCQ-FDTTTQSYQRLE 1135


>gi|295673975|ref|XP_002797533.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226280183|gb|EEH35749.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 1450

 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 169/666 (25%), Positives = 312/666 (46%), Gaps = 66/666 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD-----IAQAIKSNGFKKLIIFLA 100
           PR YQL++ E + + N I  ++TG+GKT IA++ I+          ++  G K+ + FLA
Sbjct: 30  PRAYQLEMLEASLKENIIIAMDTGSGKTQIAILRIRHELETCTEDKVRKFGLKEFVWFLA 89

Query: 101 PTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDA 158
           PTV L  QQ+ +I      ++     G+  V  W ++  W   +    ++V TPQILLDA
Sbjct: 90  PTVALADQQHKIISQQLSVYQTRLLLGSDKVHYWSTKKIWDDILLNIRIVVSTPQILLDA 149

Query: 159 LRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-------PKVFGMTASPV 211
           L   F+++  +  +V DE HH  G  P   IM+ FYH+   +       P + G+TASPV
Sbjct: 150 LSHGFVTMSRISLLVFDEAHHCDGFSPANTIMQRFYHEQLQRTGTKTDLPHILGLTASPV 209

Query: 212 VRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCGSDL 270
            R    S       + ++E  L+++  T    + E+  +V   +     +       SD+
Sbjct: 210 TRADPES-------LKKVEKNLNARCETPRIHREELMRYVHRPELYTVKFRTDSLIHSDM 262

Query: 271 K-------GKLEVSWSKFDASLSKLQG--SQLNCYKDMDDKHKTLRKQLSDYHAKILYCL 321
                   G +++    +   L + +   SQ      ++ +      QLS    + +   
Sbjct: 263 LQNLSRIIGTVDIEKDPWIKRLRRQEDRRSQEKLLHALEKRKTHCLSQLSKLLRQAISVH 322

Query: 322 DELGLICAYEAVKICLEKVLKAQ---EECEIYRQSSLQCKYFLEEVLHVIGSALPLADKI 378
           D+LG   A   +   +E++   +   ++ E +     + + F+ EVL  + S  P+    
Sbjct: 323 DDLGPWAADAFISEVIERLETKRGMYQQVEFHSSLDREEEAFISEVLSEL-SISPVKQ-- 379

Query: 379 FLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438
                 D+    ++  +STK++ L++L  S   +     IIF ++     ++   + K P
Sbjct: 380 ------DWDSESNV--VSTKVNLLVELLES-EHTADFTGIIFAQQRATVTMLSHLISKHP 430

Query: 439 FLTHLTVA--------YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
            L  + V+        Y + ++T  +    + QK  ++  R GK NLL AT V+EEG+ V
Sbjct: 431 RLKDIIVSGAFLGDACYASRTSTITEVHDTRSQKGSIDDLRSGKKNLLIATSVLEEGIDV 490

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNL---KQRNKLFDIIRSERSV 547
             C  V+ FD  K + S+IQ RGRAR+ +S+F++ L+  N+   KQ  +L D++   +S+
Sbjct: 491 SACHLVVCFDAIKNLRSFIQRRGRARKEHSKFVMFLDSDNISEEKQWTRLEDVM---KSI 547

Query: 548 TDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKP 607
            +  + R  +    +       +   +ESTGA +T +++   +  +C  L    +   +P
Sbjct: 548 YEDDMRRLEDNMARENIVEEGDQYLRIESTGALLTLENARQHLEHFCATLHY-AFTDSRP 606

Query: 608 IFKYKSAEE--AYECELTLPS--NAPFQTIVGPTS-RNKNLSKQLVCLEACEKLHQVGAL 662
            F +  ++E      ++ LP+  +  F+ I G    + + ++++    +A  KL+  G +
Sbjct: 607 HFIFHESKEDGMVAAKVILPNVLDPKFRVIHGSKRWKTERMAQRDAAFQAYLKLYNEGLV 666

Query: 663 NDHLLP 668
           ND+LLP
Sbjct: 667 NDYLLP 672



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 115/276 (41%), Gaps = 55/276 (19%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+       L PS++ ++E+ ++A +L + I   S       +L++ AL      E+ +
Sbjct: 928  LPLEYTMFALLSPSIIHKVETYLIAEELNKTI--LSPVGFTDLNLVITALCAPDAREATN 985

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +R+E LGDS+LK+  S  L    P  HEG LS  +   V N  L     +  L  +I  
Sbjct: 986  YQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKDEVVSNKRLSYAAIETGLDKFIFV 1045

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
              F   +W        RP+  +  V   ++P                      R M +KT
Sbjct: 1046 DIFTGVKW--------RPLYNKAHVKEQDIP---------------------RREMSTKT 1076

Query: 1197 IADCAEALIGAYYVGGGLIAA-------LYMMKWLGIDADLEVSLVDDCITRASLRSYVP 1249
            +AD  EAL+GA  + GG I         L  ++W+     L            +L + VP
Sbjct: 1077 LADVIEALLGAATIDGGQIKVEKCLKIFLPEIRWIPFADRLN-----------ALYNSVP 1125

Query: 1250 RINE------IKDIESKIGYEFTVKFLLQEAITHAS 1279
             + E       +DIES +GY F  K  L +A TH S
Sbjct: 1126 EVYENLPTSWFRDIESLVGYTFNKKVFLAQAFTHPS 1161


>gi|322700444|gb|EFY92199.1| Dicer-like protein 2 [Metarhizium acridum CQMa 102]
          Length = 1441

 Score =  197 bits (502), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 208/804 (25%), Positives = 359/804 (44%), Gaps = 125/804 (15%)

Query: 17  SPNPPDMGSSGHDHAVDGPSSSTNSINFI-PRIYQLKVFEVAKRRNTIAVLETGAGKTMI 75
           SP      +S H  A D  ++ + S   + PR YQL++ + + ++N I V++TG+GKT +
Sbjct: 54  SPQKQPEDASHHGIACDNETNRSPSATAMNPRAYQLEMLDQSLKQNVIVVMDTGSGKTQV 113

Query: 76  AVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWD 134
           AV+ IK     +  +   K+I FLAPTV L  QQ+DVIR+      ++   G   VD W 
Sbjct: 114 AVLRIK---AELDRSAPDKIIWFLAPTVALCGQQFDVIRLQAASVPMKLITGNDQVDTWS 170

Query: 135 SQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194
           +  W   ++   V+V T Q+LLDAL  AF+++D +  I+ DE     G HP +KIM +FY
Sbjct: 171 ADTWDTILDGVRVVVSTYQVLLDALCHAFINIDRLSLIIFDE-----GKHPGSKIMTDFY 225

Query: 195 HK----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFT-IEDKTEMEVF 249
           H+    +++ P + G+TA+P      S   D E  +  LE+ LD++  +    + E+   
Sbjct: 226 HRNKHTAESIPNILGITATP------SMTEDLEN-MEILEAVLDAKCISPTRHREELLKC 278

Query: 250 VPSAKESCRFYDQSK-FCGSDLKGKLEVSWSKFDAS----LSKLQ--GSQLNC---YKDM 299
           V   +     YD  +    ++   +L   +   D +    + +LQ   S  NC    + +
Sbjct: 279 VKRPQIYSILYDAPRSLQYTESMYRLRREFLNLDITEDPYILRLQEDPSDRNCRALVRAV 338

Query: 300 DDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359
           +     ++ Q+     + +  L +LG   A   +       L       I+       K 
Sbjct: 339 EKYDTFVQNQIKGLWGRSVEILQQLGTWAADMYIWKSASAFLARTNTNGIFNDWLDAEKK 398

Query: 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCII 419
           +L + +  +  + P         G + S+         K   L++  +S  +ST  +C+I
Sbjct: 399 YLADFIRRVSPSCPAP---MPQSGSEVSE---------KATALVRELVSVEEST--ICLI 444

Query: 420 FVERIIAAKVVERFVKKVPFLTH-----------------LTVAYLTGSTTSVDALTPKV 462
           FV+    A  +  F+   P +                   LT++ L G ++         
Sbjct: 445 FVKERATASALREFLMSCPRIVEKHRIGSMVGTSNYQSRKLTLSELIGQSSD-------- 496

Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
           Q   L+SFR GK+N+L AT V+EEG+ VP C+ VI FD P T  S++Q RGRAR   S+ 
Sbjct: 497 QMAALQSFRSGKINILIATSVLEEGIDVPACNMVICFDHPATPKSFVQRRGRARMKESKL 556

Query: 523 ILMLERGN--------LKQRNKLF--DIIRSERSVTDTALSRDPEACFLKACTYVKTKSY 572
           IL+ E  +        L++  K    D  R  R++     S +  + F++          
Sbjct: 557 ILLSEYSSSAVGKWEALEENMKAVYQDTQREIRTIQSLEDSEESSSTFME---------- 606

Query: 573 IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE-------AYECELTLP 625
            VESTGA +  +++ + +  +C +L    +   +P +   S E+            + LP
Sbjct: 607 -VESTGARLDFENAKSHLEHFCRVLSQGDFVDSRPDYITHSHEDWDSSSKPMLSATVLLP 665

Query: 626 SNAPFQ--TIVGPTS-RNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKK 682
           S  P Q   I   +S R++  + +    +A + L+Q G +N+HLLP             +
Sbjct: 666 SLVPAQLRQIDSKSSWRSEKNATKDAAFQAYQTLYQAGLVNEHLLPF------------R 713

Query: 683 NESLPGAGTTKRKELHGTT---PIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVL 739
            E +PG   T+  E+   +   P   ++  W E       ++ ++  C       S + +
Sbjct: 714 YEDIPGV-ETRAPEVEVESLLNPWFGVAKAWTEGD----QSWLYSLKCHDPMHGESEYNV 768

Query: 740 LIESELDNDVGNFELELYLVSKTV 763
           L+ +ELD  + N  ++LYL S  +
Sbjct: 769 LVPAELDQ-LRN--IQLYLNSSDI 789



 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 137/299 (45%), Gaps = 53/299 (17%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLR----EEINCHSRNFHIPSSLILEALTTLGCC 1072
            +P+   +   L+PS++  LE  ++A +L     E IN           L+ EA+++    
Sbjct: 947  IPLKFAQFGMLIPSLIHELEVTLIAKELSTTLLERINITDLG------LVREAISSRSAA 1000

Query: 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQG 1132
            E  + ERLE LGDS+LKY  +  +   +P+  EG LS  +   V NS L +   D  L  
Sbjct: 1001 EPVNYERLEFLGDSILKYCTAIQVSAIHPEWPEGYLSFFKDRLVGNSRLSRAAIDVGLAK 1060

Query: 1133 YIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWM 1192
            +I   +F  ++W        RP           + LD            G P  +  R +
Sbjct: 1061 FILTKSFTGQKW--------RP-----------LYLDN---------YTGNPGKVSPRKI 1092

Query: 1193 GSKTIADCAEALIGAYYVGGGLIAA-----LYM--MKWLGIDADLEVSLVDDCITRASLR 1245
             +KT+AD  EALIGA Y+ GG+  A     L++  ++W  + A+  +         A  +
Sbjct: 1093 STKTLADVVEALIGASYINGGITKAQNCISLFVNEIQWQDVSANRAL-----FFKMARDQ 1147

Query: 1246 SYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQI 1304
              +P   E+K +E  +GY+F  K LL EA+TH S    Y  ++ Y+HL+     +L  I
Sbjct: 1148 DVLP--AELKPLEHLVGYQFKKKSLLIEAMTHQSCMFDYNRRS-YEHLEFIGDAILDFI 1203


>gi|158706440|sp|P0C5H7.1|DCL2_EMENI RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease dcl2; Includes: RecName:
           Full=ATP-dependent helicase dcl2
          Length = 1429

 Score =  196 bits (499), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 181/646 (28%), Positives = 294/646 (45%), Gaps = 70/646 (10%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQL++FE + + N I V+ TG+GKT IA++ I  I +   S+G  KLI FLAPTV L 
Sbjct: 15  RSYQLEMFEASLKGNIIVVMGTGSGKTQIALLRI--IHELENSDG--KLIWFLAPTVPLC 70

Query: 107 HQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQILLDALRKAFL 164
            QQ+ VI  H    +     G+  V+ W  Q  W   +    V+V TP +L DA+   F+
Sbjct: 71  LQQHRVISQHIPAVKSRTLLGSDKVELWTEQAVWDAVLEGLQVIVSTPAVLHDAMTHGFV 130

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKVFGMTASP-VVRKGVS 217
            +  +  ++ DE HH    HP   IM+ FYH +  +      P++ G+TAS    R+G+ 
Sbjct: 131 RISRLGLLIFDEAHHCIRKHPTNMIMRNFYHPALQEYGPGAVPRILGLTASAGSSREGLQ 190

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
           +    E  ++ + +T  +    + + T M                      +L+  L   
Sbjct: 191 T---IEMNLNSVCTTPQAHRQELLEYTHM---------------------PELRRVLYTP 226

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL 337
             K +ASL   +GS L    + D+ + +   Q+  +  K ++   ELG+  A   ++  +
Sbjct: 227 LMKENASL--WEGSTLQKLLERDNTYCS--GQMKTFVCKAVHIFQELGIWAAEYFIRASV 282

Query: 338 EKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397
           E++L        Y  S +   Y   E L  I S  P+ D        D        +  +
Sbjct: 283 EELLS-----HAYVHSKIDLDYDEREYLVNILSKSPVPD-------IDVHSTDPKDFPVS 330

Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTSV- 455
              E L  FL   +      +IFVE+  A  V+   +   P            G + S  
Sbjct: 331 PKFEALISFLMSTEDINFSGLIFVEQRAAVTVMSYLLSTHPSTRDRFRTGSFIGMSNSTN 390

Query: 456 ------DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
                 D L+ K+Q + L+ FR G+ NL+ ATDV++EG+ V  CS VI +++PK   S+I
Sbjct: 391 RKTMLGDLLSAKMQPDTLDDFRYGRKNLIVATDVLKEGIDVSACSVVICYNIPKGFESFI 450

Query: 510 QSRGRARQHNSQFILML---ERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTY 566
           Q RGRAR+ NS + +ML   + G+   + + F+ I  E  + D    R  E   L +   
Sbjct: 451 QRRGRARRQNSTYSMMLSTEDDGSTLDKWQKFEKIMEEACLEDR--RRTEELRALGSLDE 508

Query: 567 VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLP 625
                + V STGA +T + ++  +  +C+ LP   Y   KP F ++  +      ++ LP
Sbjct: 509 DVCTRFCVRSTGAILTAEYAMQHLVHFCDTLPRQNYVEDKPEFSFERNDGGLLRAKVILP 568

Query: 626 S--NAPFQTIVGPT-SRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
           S  N   +   G    + +  +K+     A + L++ G +ND+LLP
Sbjct: 569 SSVNPKVRRAEGKAWWKTERAAKKEAAFYAYKALYEHGLVNDNLLP 614



 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 117/260 (45%), Gaps = 45/260 (17%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPS-SLILEALTTLGCCESFSMERLELLGD 1085
             +P ++ RLE+ ++A++L E +    R+        ++ A+T          +R E  GD
Sbjct: 860  FIPVILDRLEAALVATRLCETV---LRDIQFQDLRHVITAITMPLAQAPTDYQRYEFFGD 916

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV 1145
            SVLK+ V+  LF   P  HEG L+      V N+ L +   D+ L  YI  + F PR+W 
Sbjct: 917  SVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIISNRFTPRKWS 976

Query: 1146 APGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALI 1205
            AP                    +  K +   +            R M +K +AD  EALI
Sbjct: 977  APL-------------------ISEKLYASAST-----------RSMSAKVLADVVEALI 1006

Query: 1206 GAYYVGGGLIAALY-MMKWLGIDADLEVSLVDDCITRA-----SLRSYVPRINEIKDIES 1259
            GA Y+ GGL  A   ++++L      E+ L +  + R      S     P + + +++E+
Sbjct: 1007 GAAYIDGGLHKAQSCIVRFLP-----EIELPETKLPRPESMPMSKDHKKPHLIQQENLEN 1061

Query: 1260 KIGYEFTVKFLLQEAITHAS 1279
             IGY F  K LL EA+TH S
Sbjct: 1062 HIGYTFKDKTLLMEALTHPS 1081


>gi|452988240|gb|EME87995.1| hypothetical protein MYCFIDRAFT_104430, partial [Pseudocercospora
           fijiensis CIRAD86]
          Length = 1360

 Score =  196 bits (498), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 185/684 (27%), Positives = 305/684 (44%), Gaps = 96/684 (14%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ ++ E + ++N I  ++TG+GKT IA+  I+     ++     KL+ FL P+  L 
Sbjct: 4   RSYQTEMLEASVQKNIIVAMDTGSGKTHIALARIR-----VELERNDKLVWFLTPSKTLA 58

Query: 107 HQQYDVIRVH-TDFEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRKAFL 164
            QQ+ V+    + +      GA   D+W  Q  W   +    ++V TP ILLDAL  AF+
Sbjct: 59  EQQHQVLSAELSGYGTRLLTGADACDKWSDQGLWTAALTNVRLVVATPAILLDALTHAFM 118

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYH----KSDNKPKVFGMTASPVVRKGVSSAM 220
            +  +   V DE HH T  HP   IM+ FY     + ++ P + G++ASP     +  A 
Sbjct: 119 HMTRLALCVFDEAHHCTKKHPMNSIMQLFYRPARERGESVPHILGLSASP----HLPEAA 174

Query: 221 DCEGQISELESTLDSQVFTI-EDKTEMEVFV-PSAKESCRFYDQSKFCGSDLKGKLEVSW 278
             +     +ES L++   T  + + E++ FV P   ++  +   S   G  L G+L  + 
Sbjct: 175 AADHVRRTIESNLNAITVTPKQHRRELDTFVHPPDVQNIVYTAPS---GGALPGRLSTAL 231

Query: 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKI-LYCLDEL------------- 324
           +    +        +    + DD+    RKQL     K   YCLD+L             
Sbjct: 232 AYLTRTYDLSTDPYVLELTEQDDERS--RKQLQKTMMKRKTYCLDQLRALDIRAGFLLEQ 289

Query: 325 -GLICAYEAVKICLEKVLKA-QEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
            G   A   V  C+ +       EC +    S + +  L  +   I    P         
Sbjct: 290 LGASMADWYVAACIRRFRAGLMSECIVLPDLSEKERQHLARIFDRIRELAPATPDTN--- 346

Query: 383 GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT- 441
           G D         I+ K  ELL+L L     + +  IIFVE+ +    +  +++ +P L  
Sbjct: 347 GSD---------ITAKATELLELLLKHADPS-LRGIIFVEQRVLVTALAEWLRGLPQLND 396

Query: 442 HLTVAYLTGSTTS-------VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
              +A   G++TS        D +T + Q   LE+FR G+ NL+ AT+V+EEG+ +  C+
Sbjct: 397 QYQIAAFVGTSTSTNRKISVADLVTLQDQARDLEAFRRGEKNLMVATNVLEEGIDISACN 456

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER---GNLKQRNKLFDIIRSE------R 545
            VI FD P+ + S++Q RGRARQ +S++ +  +    G  KQ   L +    E      R
Sbjct: 457 LVICFDPPQNLVSFVQRRGRARQQHSKYFIFTKANDIGKAKQPWTLLEAAMKELYSDDTR 516

Query: 546 SVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK--YY 603
            V +   S D +          +++ Y V+ST A +T D++ + ++ +C +  S+   Y 
Sbjct: 517 QVCEALESHDLDK---------ESRIYQVQSTQALLTLDNAKSHLYHFCSVCISNAAGYV 567

Query: 604 TPKPIFKYKSAEEA--YECELTLPSNAPFQTIVGPTSRN---------KNLSKQLVCLEA 652
             +P F     +E   +   + LP+       V P  R+         + L+ +    EA
Sbjct: 568 DLRPEFDTSQDQETHLWTATVDLPA------FVHPDLRSARSAESWSREELAIKDAAFEA 621

Query: 653 CEKLHQVGALNDHLLPSVEEPSEN 676
              LHQ G +ND+LLP + E  E+
Sbjct: 622 YVALHQAGLINDNLLPPLHEHEES 645



 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 114/262 (43%), Gaps = 51/262 (19%)

Query: 1027 LLPSVMQRLESLMLASQLREEI--NCHSRNFHIPSSLILEALTTLGCCESFSMERLELLG 1084
             +PS++ RL+  + A+ L+     +   +N    ++LIL+AL +    E     RLE LG
Sbjct: 880  FVPSMLHRLDLALTAAILQAGTLGDIDVKN----TTLILDALCSPSAGEPADYNRLEYLG 935

Query: 1085 DSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRW 1144
            D +LK+     +   + K+ EG L+ +R   V NSTL K      L  +I    F   +W
Sbjct: 936  DQILKHCAEVQVMAQHLKRPEGSLTLQRDKIVRNSTLAKAALQAGLDEFIITKPFTGAKW 995

Query: 1145 VAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEAL 1204
              P                         F++ + +      D G R + +KT+AD  E+L
Sbjct: 996  RPPS------------------------FSKTSGL------DCGKREISTKTLADVVESL 1025

Query: 1205 IGAYYVGGGLIAALYMMK-------WLGIDADLEVSLVDDCITRASLRSYVPRINEIKDI 1257
            +GA Y+ GGL   L  +K       W  +     + L+ D    AS        + +  +
Sbjct: 1026 VGAAYLDGGLAKGLQCIKILLPNEIWHPLPHCFNL-LLSDLGPAASH-------DGLSFL 1077

Query: 1258 ESKIGYEFTVKFLLQEAITHAS 1279
            E  IG+EF  K LL +AITH +
Sbjct: 1078 ERMIGHEFEHKQLLMQAITHVT 1099


>gi|440632208|gb|ELR02127.1| hypothetical protein GMDG_05286 [Geomyces destructans 20631-21]
          Length = 1377

 Score =  196 bits (498), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 195/708 (27%), Positives = 319/708 (45%), Gaps = 83/708 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQL++FE +  RNTI V++TG+GKT IAVM I+     ++    +K + FLAPTV L 
Sbjct: 32  RLYQLEMFEASMARNTIVVMDTGSGKTHIAVMRIQ---AELERCPPQKRVWFLAPTVTLC 88

Query: 107 HQQYDVIRVHTDF-EVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRKAFL 164
            QQY  +R +  + +     G+  VD W  Q  W   +    ++V T  +L DAL   F+
Sbjct: 89  EQQYTTLRTNIPYVQTRLLVGSDNVDRWSEQRIWDAVLENVRIVVSTHGVLSDALSHGFV 148

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYH-----KSDNK-PKVFGMTASPVVRKGVSS 218
            ++ +  +V DE HH  G HP  KIMK +YH     K  N  P + G+TASPV+R   S 
Sbjct: 149 RIEELTLLVFDEAHHCAGEHPANKIMKNYYHPLLALKGPNAVPHILGLTASPVIRSKPSD 208

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
               E  ++ L  T       + +      FV  A     +       G      L V+ 
Sbjct: 209 LEIIERNLNALCRTPRVHRGELLEYVHPPTFVRLA-----YLSNPSIYGQYTSPAL-VNL 262

Query: 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338
           +   A+ +    SQ        D    LR +L  +  K  +  DELG   A   +K  ++
Sbjct: 263 TIVYANATNSSASQ--------DSDIDLR-ELKSFCRKSRHIYDELGQWAADYYIKTSVD 313

Query: 339 --KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS 396
                + +   + +  +  +    L+ + H + SA    D          S   D    +
Sbjct: 314 IWSAAETKRNGDPFFDNGKRSNALLKLLRHQVQSASSALD----------SSHPDEMNTT 363

Query: 397 TKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTSV 455
            K+ +L++   S+G    +  IIFVE+     V+ + +   P     L      G+++  
Sbjct: 364 RKVRQLVRFLTSYGNG-DLHGIIFVEQRATVAVLHQLLSLHPMTKGMLRCGTFIGTSSFS 422

Query: 456 -------DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
                  D LTP  Q + L+ FR    N + AT V+EEG+ +  C+ VI F+ P  + S+
Sbjct: 423 SRKSSLGDWLTPLEQMDTLDCFRKKDKNFIIATSVLEEGIDISACNIVICFNKPPNLKSF 482

Query: 509 IQSRGRARQHNSQFILMLERGNL----KQRNKLFDIIRSERSVTDTALSRDPEACFLKAC 564
           IQ RGRAR+  S F+L++   +     ++   + + IR E      A  R        A 
Sbjct: 483 IQRRGRARKSRSIFVLLVSSDDRSLGPQEWGDMENQIREE--YQKDASKRQKLQQLEDAE 540

Query: 565 TYVKTKS---YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYEC- 620
            +V+ +S   + ++STGA +T +++V  IH +C  LP   Y   +P F ++  E  Y   
Sbjct: 541 EHVEGRSNARFEIKSTGALLTLETAVAHIHHFCATLPPQPYVDLQPKFYFQ--ESFYGLI 598

Query: 621 --ELTLPS--NAPFQTI-VGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP------- 668
              +TLP+  ++  +T   G   +++ ++K+    +A   L++ G +N++LLP       
Sbjct: 599 TGNVTLPNCVDSSVRTASSGWEWKSERMAKKDAAFQAYVALYKKGLVNENLLPLLLGKEE 658

Query: 669 ----------SVEEPSE--NNLISKKNESLPGAGTTKRKELHGTTPIR 704
                     SVEE SE  +  IS     +  + + K+K +  T P R
Sbjct: 659 DVMADIETRASVEEVSEIFDPWISIAKSWMEPSDSLKKKLISITRPDR 706



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 119/292 (40%), Gaps = 36/292 (12%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+  V+   L+PS+M RL    +A  L   +    + F +    ++ A       E+ +
Sbjct: 889  LPMEYVECSLLIPSIMHRLWRQAVALDLYNAV-FEDQGF-LNLDYVITATNAPSANENSN 946

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +RLE +GDSVLKY V  +L+ + P   EG LS  +  AV NS L +      L  YI  
Sbjct: 947  YQRLEFIGDSVLKYLVCVNLYASQPSWPEGYLSRAKDQAVANSHLSRAALAVGLDRYIVT 1006

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
              F  R+W  P                         + QD       P     R + +K 
Sbjct: 1007 KTFTARKWSPP-------------------------YIQDILDAASSP---EKRTLSTKV 1038

Query: 1197 IADCAEALIGAYYVGGGLIAAL----YMMKWLGIDADLEVSLVDDCITRASLRSYVPRIN 1252
            +AD  EALIG  ++  G  AA       +  + I A L++       T +          
Sbjct: 1039 LADVVEALIGGAFLDRGYEAAATCISRFLPEMRITAPLDI-FARGIHTESVFAPTSLANG 1097

Query: 1253 EIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQI 1304
             + D+E  IGY+F  +  L EAITH S  E   + + Y+ L+      L  I
Sbjct: 1098 HLADVERLIGYQFKNRGYLLEAITHPSC-EHDSHTSSYQRLEFIGDATLDMI 1148


>gi|169868762|ref|XP_001840952.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130]
 gi|116498110|gb|EAU81005.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130]
          Length = 2074

 Score =  196 bits (497), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 202/737 (27%), Positives = 315/737 (42%), Gaps = 149/737 (20%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ ++ + + RRN I  L+TG+GKT IAV+ IK   +  + N  +K+  FLAPTV L 
Sbjct: 36  RAYQQEMLDESLRRNIIIALDTGSGKTHIAVLRIKHELE--REN--RKICWFLAPTVALC 91

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            QQ  VI+ +    V    GA   D+W ++  W+  +  + V+V TPQ+ LDALR  +++
Sbjct: 92  QQQQSVIKTYIPGPVGLISGAHQPDQWKNAALWKSVLETHRVIVSTPQVFLDALRHGYIN 151

Query: 166 LDI-VCFIVIDECHHATGNHPYTKIMKEFY---------HKSDN--KPKVFGMTASPVVR 213
           + + +  +V DE HHA   HPY  IMK+FY         H +D   +P V G+TASP+  
Sbjct: 152 MGLQIGLLVFDEAHHAADKHPYNLIMKDFYFKLPARSPMHDADFPCRPMVLGLTASPIFG 211

Query: 214 KGVSSAMDCEGQISELESTLDSQVFT-------IEDKTEMEVFVPSAKESC---RFYDQS 263
            G     D       +E+ LD+ + T       +       +F  +   SC    F    
Sbjct: 212 SG-----DVNKAFRLIEAHLDAMICTPRYNRKELAQHVHRPIFKHAPYMSCPTQSFSTNL 266

Query: 264 KFCGSDLKGKLEVSWSKFDASLSKLQGSQLNC-------YKDMDDK-HKTLRKQ------ 309
               S L+G L++   + D ++  L+ SQL+        ++ +D +  KT+ KQ      
Sbjct: 267 ATLSSVLEG-LDI---QNDPNVLSLR-SQLSKTPPDSPEWRRLDQRLSKTITKQDSFTHK 321

Query: 310 -LSDYH-AKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHV 367
            L+D+H A    C      I A+ A       V KA+     Y       +   +  L  
Sbjct: 322 GLADFHRAASDICFS----IGAWAADWYVWTVVQKAKHAANPYNNIMSTWRSSEKAYLLQ 377

Query: 368 IGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVL-----CIIFVE 422
           I ++L L+   + +          L   + K+  L++  L   +  + L      I+FV+
Sbjct: 378 ILTSLVLSPPSYYEDDI-------LSECTDKVRVLVECLLEEKEEVEGLNESFSGIVFVQ 430

Query: 423 RIIAAKVVERFVKKVPFLTH-LTVAYLTGSTTSVDA---------LTPKVQKEVLESFRG 472
           R  A   +   +K  PF     TV  L G++ S            +T + Q   L SFR 
Sbjct: 431 RRDAVLALAELLKHHPFTKDSFTVGVLLGTSDSAHRHSLMDVTRHITKQSQDSTLSSFRL 490

Query: 473 GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK 532
           G  NL+ AT V EEG+ +P C  VIR+D P  ++S+IQSRGRAR+  S F LM +     
Sbjct: 491 GIHNLILATSVAEEGLDIPACGSVIRWDPPPNMASWIQSRGRARRKRSTFTLMYD----- 545

Query: 533 QRNKLFDIIRSERSVTDTALSRDPEACFLKACTY----------VKTKSY---------- 572
                   +  +R+  + A  R+ E   ++  +           V  + +          
Sbjct: 546 --------VEEDRAQANVAKWREVEERMVEMYSRNSGGREGDAGVDVEDWEGEEPDDFDA 597

Query: 573 --IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPF 630
              VESTGA +T  S+V+ +  +C ++        +PI+     +      LT PS A  
Sbjct: 598 VLSVESTGAYLTPHSAVSHLAHFCAVISRSGSNENRPIYDIDPPDYVPGLHLTAPSAAGS 657

Query: 631 QTI-------------VGPTSRNKNLSKQL----------------------VCLEACEK 655
           Q+               GP +    L + L                          A   
Sbjct: 658 QSTGFASSMAHAHQPYAGPWTSTVTLPRSLPLPTRSFTTAKPYATKLAAHRHAAFLAYSY 717

Query: 656 LHQVGALNDHLLPSVEE 672
           LH+VG LN+HLLP  E+
Sbjct: 718 LHEVGLLNEHLLPLYED 734



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 116/275 (42%), Gaps = 48/275 (17%)

Query: 1056 HIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWA 1115
             IP  ++  ALT     E  + +RLE LGD+VLK+     +F  YP  HEG L+ R+  A
Sbjct: 1487 QIPLDVLTVALTAPVAGERHNYQRLETLGDTVLKFLAGIQIFAEYPMWHEGYLTKRKDHA 1546

Query: 1116 VCNSTLHKLGTDRKLQGYIRDSAFDPRRW-------VAPGQ---LSLRPVP--------- 1156
            V N  L K    R +  +I       ++W         P +   + + P+P         
Sbjct: 1547 VANVRLAKECVKRGVVRWIIRDRLLGKKWKPRYITKADPSRGEPMDVDPIPDVVKRDKPK 1606

Query: 1157 ----------------CECGVDTLE-------VPLDGKFFTQDTKV----VVGKPCDMGH 1189
                             E  VD  E       +  DGK    +TKV       K     +
Sbjct: 1607 DTGAKEIGAKETSVSDAEMKVDKGEESNAEAKIDDDGKGLKAETKVQGEKKKKKKNKQAN 1666

Query: 1190 RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKW--LGIDADLEVSLVDDCITRASLRSY 1247
            + + +K +AD  E+LIGA Y+ GG        K+  LG+      + VD  ++R      
Sbjct: 1667 KQLSTKVLADVIESLIGAAYISGGFPLGYECAKFFDLGLKWAPLPTRVDQILSRVQPEDD 1726

Query: 1248 VPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE 1282
            +P   ++ D+E  +GY F  K LL EA+THAS +E
Sbjct: 1727 IPIPPQLADVEHMLGYTFKRKILLIEALTHASYRE 1761


>gi|41469332|gb|AAS07188.1| putative ribonuclease III, 5'-partial (with alternative splicing)
           [Oryza sativa Japonica Group]
          Length = 416

 Score =  196 bits (497), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/381 (32%), Positives = 200/381 (52%), Gaps = 15/381 (3%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
           CI+FVER+I + V+E  +  +  ++   V ++ GS   + + + K   E++ESFR GKV+
Sbjct: 7   CIVFVERVITSIVLEHLLSSIHQMSGWNVKHMAGSRPGLLSQSRKNHTEIVESFRKGKVH 66

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           ++ AT ++EEG+ VP+C+ VIRFD   TV S+IQSRGRAR  NS ++L++ RG+++ +  
Sbjct: 67  IIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQSRGRARMENSDYLLLVGRGDVEAQTN 126

Query: 537 LFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEM 596
               + S + + + +L     +C     T  +   Y VEST A VT +SSV LIH +C  
Sbjct: 127 AEKFLASGQIMREESLRLGSISCQPLENTLCEDTYYRVESTRAIVTLNSSVPLIHFFCSK 186

Query: 597 LPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKL 656
           LPSD+Y+ P P F    A     C L LP ++P QT+        ++ K+ VCL+AC++L
Sbjct: 187 LPSDEYFNPLPRFDIDKASGT--CTLHLPKSSPVQTV--NVEGEGSILKETVCLKACQEL 242

Query: 657 HQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSG-RWGEKCG 715
           H +GAL D LLP ++ P +           P      + E     P   +   R   + G
Sbjct: 243 HAIGALTDSLLPELDVPCDEE---------PDIVVENKIEQPSYFPEEFVDNWRSFSRLG 293

Query: 716 VILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHL 775
            I + YK +      T   +  +L ++ +L +D  +   +L         T+   G +HL
Sbjct: 294 -IYYCYKISLEGCPKTASPTDILLALKCDLGSDFTSSSFKLPGGQDNASVTMKYVGIIHL 352

Query: 776 DADQMSKAKCFQELFFNGLFG 796
           + +Q+  A+ FQ    + L G
Sbjct: 353 NQEQVIIARRFQTTILSFLIG 373


>gi|358383044|gb|EHK20713.1| hypothetical protein TRIVIDRAFT_171147, partial [Trichoderma virens
           Gv29-8]
          Length = 1373

 Score =  195 bits (496), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 169/595 (28%), Positives = 271/595 (45%), Gaps = 71/595 (11%)

Query: 94  KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
           K+  FL   V L  QQ+ V+  + +F + +++G         + W ++  +N   V T Q
Sbjct: 19  KIAFFLVEKVALCFQQHAVLTTNLEFPIGKFFGEMTGVVRSQEYWDRQFAENMAFVCTAQ 78

Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-DNKPKVFGMTASPVV 212
           ILLD L   F+S+  +  +V DE HHA  +HPY +I+K+ Y +S D +P++ GMTASPV 
Sbjct: 79  ILLDLLACGFISMGQINLMVFDEAHHAKKSHPYARIIKDHYLRSRDERPRILGMTASPVD 138

Query: 213 RKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
               +   D     +ELES L S++ TI D+  M+    S    C    +        + 
Sbjct: 139 ----ALTKDVRYAAAELESMLCSKIATISDEALMQNPEFSKTRLCDLISRCVRSNPQFRR 194

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            LE     F AS S + G+                   +D + ++L   +E+  I A   
Sbjct: 195 HLE-----FAASASSILGTWC-----------------ADRYWQLLTTDNEMLRIEARTG 232

Query: 333 VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDL 392
            +  LE  + A +E              +  +  V G    + D +F   G   + + +L
Sbjct: 233 -RDNLELDVSAGDEA-------------MAAIAKVKGI---IRDHVF---GPIQAGSPEL 272

Query: 393 GYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGS 451
                 L+E+L+   +F K     CI+FVE R  A  + + F +    +  +  AY+ GS
Sbjct: 273 SSKVKTLYEVLED--AFCKRQAKRCIVFVEARSTAFLLADLFQQPGMEIPGMKAAYMIGS 330

Query: 452 TTSVDA---LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
            TS  +   ++ + Q   L+ FR G+ N LFAT V EEG+ +P C  +IRFDL  +   Y
Sbjct: 331 HTSTASAAYMSYRDQIMSLQKFRYGETNCLFATSVAEEGIDIPECDVIIRFDLYTSAIQY 390

Query: 509 IQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRS-------------ERSVTDTALSRD 555
           IQS+GRARQ +S ++ M+E GNL+   KL    R              +R V D  +  D
Sbjct: 391 IQSKGRARQKSSLYVSMMEEGNLEHMRKLRRATRDAHALRQFCSALPEDRKVPDFVIGPD 450

Query: 556 PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPI-FKYKSA 614
                L A   V  K Y V  TGA +T  +S+ ++ +Y    P++      P+ +   S 
Sbjct: 451 ----VLAAQEQVTQKRYTVAGTGAQLTFITSLEVLAKYASSFPNNAIDGLLPLEYIVTSI 506

Query: 615 EEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPS 669
            + +   + LP  +P +   G   ++K L++     EAC  L     +N +L P+
Sbjct: 507 GKKFVARVILPDASPIKMFPGEVQKSKQLARCSAAFEACVHLIGKKYINGNLQPA 561



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 90/212 (42%), Gaps = 54/212 (25%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+ VV    +LP V+ R++S+++A +      C   +  I S L LEA+T     +SF+
Sbjct: 846  IPVDVVSIALVLPVVIYRVDSVLIALE-----TCSLFDLAICSDLALEAVTK----DSFN 896

Query: 1077 ME------------------RLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118
             E                  RLE LGD+ LK A +  ++   P   E      R   +CN
Sbjct: 897  TEEHGEHQIDFQPGMGKNYERLEFLGDTFLKMATTISVYTIAPDADEFHYHVGRMMMLCN 956

Query: 1119 STLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTK 1178
              L +   ++ +  YIR  AFD R W  P  ++L+                GK    +TK
Sbjct: 957  KNLFEHAVEKGMPAYIRTKAFDRRTWY-PSNMTLK---------------RGKAARTETK 1000

Query: 1179 VVVGKPCDMGHRWMGSKTIADCAEALIGAYYV 1210
                         +  K+IAD  EALIGA Y+
Sbjct: 1001 -----------HCLSHKSIADVCEALIGAAYM 1021


>gi|345494561|ref|XP_001602524.2| PREDICTED: endoribonuclease Dicer [Nasonia vitripennis]
          Length = 1450

 Score =  194 bits (494), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 171/602 (28%), Positives = 282/602 (46%), Gaps = 57/602 (9%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFL 99
           F  R YQ+ ++E    +N+I  L TG+GKT IAV+L+K    D+ +     G  K  IF+
Sbjct: 9   FKARPYQIYLYEKTIEQNSILYLPTGSGKTYIAVLLVKRLSGDVQRQYTEGG--KRTIFI 66

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
             TV LV QQ   +  HT    + Y G  GVD W  + W+KEIN N VLVMT QI L+ L
Sbjct: 67  VNTVALVVQQTAFLTRHTGLVCKGYSGDMGVDFWSKEEWRKEINTNQVLVMTAQIFLNLL 126

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSS 218
              ++SLD +  ++ DECH A  +HP  +IM+ F      K P+V  M+AS ++   V  
Sbjct: 127 THGYISLDKINLLIFDECHRAVKDHPMRQIMQRFQDYPKEKLPRVLAMSAS-LLNANVPL 185

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEV 276
               E  + ELE T  +++ T+E    +  +  + KE   +Y+        +++   +E 
Sbjct: 186 G-KIETTLRELEVTFQAKIITVESLAYVTDYATNPKEFVEYYETPHKISLLNEISAIVEY 244

Query: 277 SWSKFDASL--SKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334
           + S     +  ++++  + +       K   L + LSD        L ++GL    E+V 
Sbjct: 245 ASSILKQVVLPNRMENPESSMIFKPVSKTIKLNRILSDVEEH----LTDMGLYGGSESVL 300

Query: 335 I------CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
                  CL++    +E   ++     Q    ++++L    + + L D I     F  SK
Sbjct: 301 QHIIQLECLKRFGDEKEAIAMFDFIITQLVK-IQKLLSDAMNEVQLPDTI---QRFSSSK 356

Query: 389 AVDLGYISTKLHELLQLFLSFGKSTQVL-CIIFVERIIAAKVVERFVKKVPF----LTHL 443
            +       KL E+L+ F +  ++ +   CIIFV+R   AKV+ + + K+         L
Sbjct: 357 VL-------KLMEVLKTFYNNMENKRNFCCIIFVKRRFTAKVLYQLLSKLSSCDEDFQFL 409

Query: 444 TVAYLTGSTTSV------DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
              Y+ G + +            K   EVL  FR G  N + ATDV++EG+ +P+C+ ++
Sbjct: 410 KPQYMVGYSNNPYKNARETVCIAKWNDEVLTKFRNGVANCVVATDVVDEGVDIPSCTLIV 469

Query: 498 RFDLPKTVSSYIQSRGRARQHNSQFILML-ERGNLKQRNKLFDIIRSERSVTDTALSRD- 555
           R+  P    +YIQS+GRAR   S FI++     +   R + F   ++ER +      +  
Sbjct: 470 RYYAPMDFRAYIQSKGRARHSTSHFIILASSEDDYISRYRSFQ--QTERFLRQALHGKSD 527

Query: 556 ----PEACFLKACTY-VKTKSYIVESTGAS---VTTDSSVNLIHRYCEMLPSDKYYTPKP 607
               P    + A  Y    + YIV+    +   +T  S+++LI+ YC  L   K+    P
Sbjct: 528 YRIKPSNNDVDALLYQYVIQPYIVKDANGTISVITEQSAISLINEYCANLVKSKFIMLTP 587

Query: 608 IF 609
            +
Sbjct: 588 TW 589



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 119/266 (44%), Gaps = 43/266 (16%)

Query: 1052 SRNFHIPSSL-ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSA 1110
            S N + PS + IL++LTT    + F++ER+E LGDS LK+A+S  L+  YP   EG L+ 
Sbjct: 1012 SSNPYGPSPVDILQSLTTKVKNDVFNLERVETLGDSFLKFAISLFLYQAYPTCGEGPLTH 1071

Query: 1111 RRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG-------QLSLRPVPCECGV- 1161
             +   V N  L      + + G +    F P   +V P        Q  LR       + 
Sbjct: 1072 LKGKLVGNLNLFYCSKQKNIAGRMHVEDFAPTGNFVTPAYAAHQVLQQILRAEKVSANIL 1131

Query: 1162 DTLEVPLDGKF----------FTQDTKVVVGKPCD-----------MGHRWMGSKTIADC 1200
              + VP   +F            QD   V+  P D           +G + +  K+++DC
Sbjct: 1132 YEIRVPAAERFSGCISNNTTDMMQDK--VLAWPSDEKVTHTGMEHFLGIQVVSDKSVSDC 1189

Query: 1201 AEALIGAYYVGGGLIAALYMMKW-------LGIDADLEVSLVDDCITRASLRSYVPRINE 1253
             EALIG Y +  G+  AL ++KW       L +D  L   + +  +    +  ++P    
Sbjct: 1190 TEALIGTYLLHLGIKGALQILKWFEILPKSLNVDQYLYSEVENPQLGDGDVNVHIPW--- 1246

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHAS 1279
             + +E ++GY+F  +  L +A TH S
Sbjct: 1247 AQTMEERLGYKFRNRAFLLQAFTHPS 1272



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 918  GRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHN 977
              +Y + ++     AES F  +   D  ++V+YF E++ I + +P QP+L +K   +  N
Sbjct: 772  SNMYIVTQVCEYLKAESSFPTS---DYNSYVHYFKERHYIEIKNPAQPMLEVKPISSKIN 828

Query: 978  LLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLES 1037
                 +      K  ++ +         H+ PEL  R+D P         LPS++ R+  
Sbjct: 829  CTKPRSIKANLSKRKRASLTE---DFEEHLVPELCDRIDFPSLYWLKATTLPSILHRISQ 885

Query: 1038 LMLASQLREEINCHSRNFHIPS 1059
            L+ A +LR +I  H    HI S
Sbjct: 886  LIAAEELRVKI-AHEAQLHISS 906


>gi|296812107|ref|XP_002846391.1| dicer-like protein 2 [Arthroderma otae CBS 113480]
 gi|238841647|gb|EEQ31309.1| dicer-like protein 2 [Arthroderma otae CBS 113480]
          Length = 1437

 Score =  194 bits (494), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 178/667 (26%), Positives = 304/667 (45%), Gaps = 79/667 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ+++ E + ++N I  ++TG+GKT IA++ I+     ++     K++ FLAP V L 
Sbjct: 58  RAYQVEMLEESLKQNIIVAMDTGSGKTQIAILRIR---HELERCPIHKIVWFLAPKVPLA 114

Query: 107 HQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRKAFL 164
            QQY  I      ++     GA  ++ W +Q  W   +    ++V TPQ+LLDAL   F+
Sbjct: 115 EQQYLAISKQLPAYQTRILTGADNLERWSTQKIWDAFLLNTRIVVSTPQVLLDALSNGFI 174

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYH-------KSDNKPKVFGMTASPVVRKGVS 217
           +L  +  +V DE HH   + P  +IM+ FYH       K+++ P + G+TASP       
Sbjct: 175 TLRRIALLVFDEAHHCVKSAPENRIMQNFYHAQVHQLRKTNDLPYILGLTASP------- 227

Query: 218 SAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276
           ++   E  + +LE  L +   T    + EM  FV   +     Y +       L   LEV
Sbjct: 228 TSSSAEDALRQLELNLHACCKTPNIHREEMMQFVHIPELRKVSYQKDLM----LLNNLEV 283

Query: 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRK------------QLSDYHAKILYCLDEL 324
            +     S+          YK   D+    R             QL    +KI+Y   EL
Sbjct: 284 KFFAMLNSIDIQDDPFFQRYKGKHDRKSQERYTLALERKTPCLIQLKRCFSKIVYMFSEL 343

Query: 325 GLICAYEAVKICLEKVLKAQEECEIYRQSSLQ---------CKYFLEEVLHVIGSALPLA 375
           GL  A   +              EIYR++  +          ++  ++   +  + LP+ 
Sbjct: 344 GLWAASTYI-------------SEIYRRAHDKKAKLIDQNWSEWDKDDASFICNAMLPVI 390

Query: 376 DKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435
           + I  +  +D +       +S K+  L+ L LS   +     IIFVE+   A ++   + 
Sbjct: 391 E-IMGERHWDTAP----DSVSQKVDHLIHL-LSSEHTGTSRGIIFVEQRATAVMLTHLIS 444

Query: 436 KVPFLTHLTVAYLTGST------TSVDALT-PKVQKEVLESFRGGKVNLLFATDVIEEGM 488
           + P LTH+   Y  G++      + +  L+ P   K+ +   + GK NLL AT V+EEG+
Sbjct: 445 QHPKLTHIKSDYFLGNSAFAARKSDITELSKPGDMKDSINDLKSGKKNLLVATSVLEEGI 504

Query: 489 HVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNL---KQRNKLFDIIRSER 545
            V  C  V+ FD PK + S++Q RGRAR+ NS++++     +    K    + DI++ ER
Sbjct: 505 DVSACDLVVCFDPPKQLRSFVQRRGRARKANSKYVIFHAEDDTSTKKDWEAMEDIMK-ER 563

Query: 546 SVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSD-KYYT 604
              +  L  +  A           ++  +ESTGA +T D++   +  +C  LP D     
Sbjct: 564 YSNNKELIDEYLAQESDDEDENDYENLRIESTGALLTLDNARQHLSHFCSTLPCDFTDIQ 623

Query: 605 PKPIFKYKSAEEAYECELTLPS--NAPFQTIVG-PTSRNKNLSKQLVCLEACEKLHQVGA 661
           P  I     A   +  ++ LP+  +  F+   G  T + + ++K+    +A  +L++V  
Sbjct: 624 PDFIISKAVAGTMFTAKVLLPTALDPQFREFEGIRTWKKEKMAKRDAAFQAYLQLYEVSL 683

Query: 662 LNDHLLP 668
           +N+HL+P
Sbjct: 684 VNEHLMP 690



 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 117/270 (43%), Gaps = 39/270 (14%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+   K    +PS++  +   +LA +L + I        I   L+L A++     ES +
Sbjct: 943  LPVGFSKFALFIPSLIHTVGRFLLAEELSKTILSPIGFKDI--QLVLTAISASSARESTN 1000

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +RLE LGDS LK   S  L + +P  HEG LS ++ + + NS L K   +  L  +I  
Sbjct: 1001 YQRLEFLGDSALKLHTSMQLLVDHPFWHEGLLSHKKGFIISNSRLWKATIETGLDRFILT 1060

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
            + F   +W                      PL    +T +     G+      R + +KT
Sbjct: 1061 ACFTGAKW---------------------RPLYNSTYTAN----AGRVGKNSTREISTKT 1095

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMK-------WLGIDADLEVSLVDDCITRASLRSYVP 1249
            +AD  EALIGA  V GG   AL+ ++       WL  +  +E+ L D            P
Sbjct: 1096 LADVVEALIGAAIVDGGEDKALHCLQVFLPEINWLSYEKRIEM-LYD---ASPEFHDNAP 1151

Query: 1250 RINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
              + +  IE  I Y FT K LL  +++H S
Sbjct: 1152 H-DILSKIEPLIDYSFTKKALLATSLSHPS 1180


>gi|169610828|ref|XP_001798832.1| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
 gi|160702165|gb|EAT83689.2| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
          Length = 1443

 Score =  194 bits (492), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 183/675 (27%), Positives = 295/675 (43%), Gaps = 112/675 (16%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQ+++F  AK +NTIAVL+TG                                    
Sbjct: 48  PRDYQMELFLRAKMQNTIAVLDTG------------------------------------ 71

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
                      TD  VE   GA G   +  Q W K    N V+V T Q+L+D +  +F+S
Sbjct: 72  -----------TDQGVEGISGAMGQSLFQKQTWDKLFAVNMVIVCTAQVLVDCMMHSFMS 120

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFY-HKSDN--KPKVFGMTASPVVRKGVSSAMDC 222
           +  +  ++ DE HHA  NHPY ++MK++Y H+ D   +P++F MTASPV  KG  SA   
Sbjct: 121 ISRMNLLIFDEAHHAKSNHPYARVMKDYYAHELDTSKRPRIFAMTASPVDVKG-QSAEHV 179

Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD 282
                ELE+ L S++ T  D       +   +E    Y + +              ++F+
Sbjct: 180 REAARELETLLHSRIATTSDSALARNSITRPEEEVAVYTRLR--------------NEFE 225

Query: 283 ASLSKLQGSQLNCYKDMDDKHKTLRKQL--SDYHAKILYCLDELGLICA--YEAVKICLE 338
             L +   ++   Y D+       RK    +  HA       ELG   +  Y +     E
Sbjct: 226 TPLHQKVKAK---YGDV----APFRKLFITAKLHAS------ELGRWASDMYWSFAFADE 272

Query: 339 KVLKAQ--EECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS 396
           +  K Q  EE +  R         L+  +  +  A     +   + G       DL    
Sbjct: 273 QSRKLQIREELKYNRSKRDWSAAELDAQMARLKEATAFVQQ--YEIGAPTLSEQDLSSKV 330

Query: 397 TKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV--PFLTHLTVAYLTGSTTS 454
            KL   L L+  + ++T   CI+FVE+   A++++     +  P L H  V     +   
Sbjct: 331 MKLQYWLNLY--YERTTLARCIVFVEKRHTAQLLKLIFDHIGGPNL-HCDVLVGINNRAG 387

Query: 455 VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
            + ++ + Q   L+ FR G++N LFAT V EEG+ +P C+ V+RFDL +T+  Y+QSRGR
Sbjct: 388 EENVSLRSQILTLQKFRRGELNCLFATSVAEEGLDIPQCNLVVRFDLYRTMIGYVQSRGR 447

Query: 515 ARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD--TALSRD-------PEACFLKACT 565
           AR  NS+++ MLE  N +   +L +    E  + +    L+ D        E   L A  
Sbjct: 448 ARHRNSKYLHMLEAENKEHTERLMNARHDENIMREFCKDLTHDRQLGDVEQEKAELIALE 507

Query: 566 YVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYT---PKPIFKYKSAEE------ 616
                SY  E +GA +T  SS++++  +    PS  + T   P  +   K +++      
Sbjct: 508 DKLFPSYTDEKSGAKLTYRSSLSILSHFVATYPSPDHNTMAQPTYVVNPKISDDPRDPQR 567

Query: 617 -AYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE--P 673
             + CE+ LP + P  ++VG     K ++K     + C +L +   LN+ LLP++ +  P
Sbjct: 568 NGFVCEVILPEHCPIISMVGQVYSRKTIAKCSAAFKMCIELRRKDHLNEFLLPTISKYLP 627

Query: 674 SENNLISKKNESLPG 688
           +  N +   +E   G
Sbjct: 628 AMRNALLAVSEKKKG 642



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 123/549 (22%), Positives = 200/549 (36%), Gaps = 146/549 (26%)

Query: 915  IHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFV----NYFSEKY----GIVLIHPGQPL 966
            ++ GR Y    +  +   + P   N    +  F+    ++   K+     I   H  QP+
Sbjct: 809  MNGGRRYYSDRLAPHLKPQDPVPANVPRQNHKFMKNILDFSDSKWMKSRDITRWHQDQPV 868

Query: 967  LRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLY 1026
            L++++     N L N  D     K  K   N     +  ++ PE L   ++    V   Y
Sbjct: 869  LQVEKIPFRRNHLANVED-----KEKKELAN-----LETYICPEPLHISNLATPFVVMCY 918

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------------TLGCC 1072
            +LP+++ R ES ++A        C   +  +  +L LEALT                   
Sbjct: 919  VLPAIIHRFESYLIALDA-----CDVLDLKVSPALALEALTKDSDNSEEHGEEKINFKSG 973

Query: 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL-------- 1124
               + ERLE LGD  LK A S  +F+  P+++E +   RR   +CN  L +         
Sbjct: 974  MGPNYERLEFLGDCFLKVATSLSVFVQQPEENEFEFHVRRMLMLCNQNLMETAVGKKKVA 1033

Query: 1125 ---GTDRKLQ--GYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKV 1179
               GT+R LQ   Y+R  AF  R W   G   LR                GK   +  + 
Sbjct: 1034 SANGTERDLQLYKYVRTDAFSRRNWYPEGLKLLR----------------GKGLKKTEED 1077

Query: 1180 VVGKPCDMGHRWMGSKTIADCAEALIGAYYV---GGGLIAALYMMKWLGIDADLEVSLV- 1235
             +    ++ H  +G K++AD  EA IGA ++    GG        +W   D D  V  V 
Sbjct: 1078 WL----NVTHN-LGDKSVADVCEAFIGAAFMQHHKGG--------QWTPNDWDEAVKAVK 1124

Query: 1236 -----DDCITRASLRSYVP--------------RINEIKDIESKIGYEFTVKFLLQEAIT 1276
                 DD +       Y                +++    IE K  Y F    LL+ A  
Sbjct: 1125 LFANSDDHLMEKWTDYYAAYTKPKYQTAGATATQLDLAHKIEMKHPYRFRYPRLLRSAFI 1184

Query: 1277 HASVQEFYCYQNL--YKHLQHCSTLLLS-------------------------------- 1302
            H S  + + ++N+  Y+ L+     LL                                 
Sbjct: 1185 HPS--QPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPDKDPQWLTEHKTPMVSNKFL 1242

Query: 1303 ---QITEYVKSFPKPGETTDSGPSM-----KAPKALGDLLESIVGAVLIDTKLNLDEVWR 1354
               QI +YV    +     +          + PK L D++E+ V A+ +D++ + + V +
Sbjct: 1243 GAVQIRDYVYEVEEAEREANGAVDYWVSVSEPPKCLADVIEAFVAAIFVDSEFDFNVVQK 1302

Query: 1355 IFKPILSPI 1363
             F   L P 
Sbjct: 1303 FFDLHLKPF 1311


>gi|358397707|gb|EHK47075.1| hypothetical protein TRIATDRAFT_291296 [Trichoderma atroviride IMI
           206040]
          Length = 1507

 Score =  194 bits (492), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 184/707 (26%), Positives = 310/707 (43%), Gaps = 88/707 (12%)

Query: 13  GEVHSPNPPDMGSSGHDHAVDGPSSSTNSIN-----FIPRIYQLKVFEVAKRRNTIAVLE 67
           GE H P      +S     +DG  + T   N        R YQL++ E + R+N I  ++
Sbjct: 86  GEAHVPGADIRDASPAQQLLDGGQAETPGGNGEQAIMASRAYQLEMLEQSLRQNVIVAMD 145

Query: 68  TGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYG 126
           TG+GKT +AV+ IK     ++    KK++ F+ PTVHL  QQ+ V+++      ++   G
Sbjct: 146 TGSGKTQVAVLRIK---AELERCDPKKIVWFITPTVHLSAQQHTVLKLQIPSVPMQMLAG 202

Query: 127 AKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPY 186
            + +  W  + W   + K  V++ TPQILLDAL  A+L ++ +  IV DE H+  G +P 
Sbjct: 203 NRHLPTWTQEMWTPLLAKTRVVITTPQILLDALDHAYLKMEHLALIVFDEVHNCVGKYPG 262

Query: 187 TKIMKEFYH----KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI-- 240
            KIM+  YH       + P + G+TA+P ++   S A D    +  LE  +D++  +   
Sbjct: 263 GKIMQHHYHPCLSAGKSVPAILGLTATPSIQ---SEATD----LVALEQLMDARCISPTL 315

Query: 241 ----------EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQG 290
                         + + ++P+ + S           SDL    +        +L++  G
Sbjct: 316 HRDELLKCVKRPSIQHKAYIPAEEYSTPTMKSLSRVYSDLDINKDPFVQSLRENLTERNG 375

Query: 291 SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA----YEAVKICLEKVLKAQEE 346
             L      +D +  +  Q+  + ++      +LG   A    ++++   L+K     E 
Sbjct: 376 RLLEKTILKEDTYTQI--QMKTFKSQSQSICKQLGPWAADLFIWKSISSYLDKAEYGDEF 433

Query: 347 CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVD-LGYISTKLHELLQL 405
            + + Q   + K +L  +   +    P              KA   L  IS K+  LL+ 
Sbjct: 434 FDQWYQCRDREKKYLAGIFRRVEVEPP-------------PKAPQGLNDISDKVLVLLEE 480

Query: 406 FLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL-THLTVAYLTGSTTS------VDAL 458
            LS  + +  + IIFVE  +  K++   +   P +     V  + GS++       V   
Sbjct: 481 LLSIDEQS-TMGIIFVEERVMVKMLAEILSINPAIKKKYRVGTMVGSSSYSSKRRVVYDF 539

Query: 459 TPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518
             K   + L++FR GK+NLL AT V+EEG+ VP C+ VI FD+PKT  S+IQ RGRAR  
Sbjct: 540 GDKGDLKALQNFRSGKINLLIATAVLEEGIDVPACNLVICFDVPKTSKSFIQRRGRARMK 599

Query: 519 NSQFILMLERGNLKQRN---------KLFDIIRSERSVTDTALSRDPEACFLKACTYVKT 569
           +S+ +L  + G+   +          +LF+    +R +    +  + E+        + T
Sbjct: 600 DSRLVLFFDEGDASSKKWEEKEDEMARLFE--DEQREIQQLEMIEESES--------LGT 649

Query: 570 KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAP 629
             Y    TGA +  D++   +  +C  L   ++   +P +     +      LT     P
Sbjct: 650 ICYTHPVTGARLDFDNAKPHLEHFCRTLSPTEFVDSRPDYIIHKEDGVGSNALTATVLLP 709

Query: 630 FQTIVGPTSRN--------KNLSKQLVCLEACEKLHQVGALNDHLLP 668
               V P   N        KN +K     +A   L+  G LND+LLP
Sbjct: 710 PFIPVNPRQYNSASVWRSEKNATKD-AAFQAYMALNDAGLLNDNLLP 755



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 125/293 (42%), Gaps = 51/293 (17%)

Query: 998  TKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR----EEINCHSR 1053
            + +P   V+ P E  +   VP +      ++P+++  L  +++A +L     E +     
Sbjct: 981  SSRPYSRVY-PMEWAIVDTVPATHAMFGMIIPTIIHELGVMLMAKELATTVLEPVGISDW 1039

Query: 1054 NFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRS 1113
                   L+ EA+      E  + ERLE LGDS+LK        +T P   EG LS  R 
Sbjct: 1040 G------LVREAICARSANEPMNYERLEFLGDSILKLCTCIQAAVTKPDWPEGYLSYWRD 1093

Query: 1114 WAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFF 1173
              + N  L++   D +L  ++    F   +W        RP+  E   D L+        
Sbjct: 1094 RLISNVRLYQAAVDFRLPRFLVTKPFTGHKW--------RPLYLE---DVLQ-------- 1134

Query: 1174 TQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAA-------LYMMKWLGI 1226
             +D    V  P     R + +KT+AD  EALIGA Y  GG+  A       L  + W GI
Sbjct: 1135 -ED----VNAPTT--ERRLSTKTLADVVEALIGASYCEGGIAMAEKCIAMFLSEIDWDGI 1187

Query: 1227 DADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
            D   E+        R      +P I  ++ +E  +GY F  K LL EA+THAS
Sbjct: 1188 DKGREI-----LFNRVPPNERLPPI--LEPLERLLGYTFQRKALLTEALTHAS 1233


>gi|328849595|gb|EGF98772.1| hypothetical protein MELLADRAFT_79606 [Melampsora larici-populina
           98AG31]
          Length = 1540

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 181/696 (26%), Positives = 294/696 (42%), Gaps = 123/696 (17%)

Query: 23  MGSSGHDHAVDGPSSSTNSI------NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIA 76
           M +   D  V  P+++  S       N  PR+YQ ++ E AKRRN I   +TG GKT++A
Sbjct: 1   MSTIDTDSKVTTPTTTQESEQGVLSGNKCPRLYQEELLEEAKRRNIIIRADTGTGKTLVA 60

Query: 77  VMLIKDIAQAIKSNGFKKLI-IFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS 135
           V+L+  +A   K +  +  I  FL PT  LV QQ   IR  T   V EY G    + W+ 
Sbjct: 61  VLLMDWMAVQPKGDDQEHTIQAFLVPTRPLVQQQASAIRSGTTLRVREYTGDLQPELWNV 120

Query: 136 QCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195
           + W  ++ + DV+V T QI  D L K F +L+ V  +V DE HH   NH Y +IM+  Y 
Sbjct: 121 EKWHSDLKQTDVIVCTAQIFYDILSKGFWTLENVSLLVFDEAHHCRKNHIYNQIMQVHYR 180

Query: 196 KSDNK------PKVFGMTASPV--------VRKGVSSAMDCEGQIS----------ELES 231
           + D        PK+ G+TASP+          K +        ++S           L+S
Sbjct: 181 RLDRDPDHRRVPKILGLTASPIWDCKSMVRAEKDIRHVSSNRLKVSYLKLITFWFRSLQS 240

Query: 232 TLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQG 290
            L +Q++ I+  + ++E +    KE   ++  +   G D     E  W +    +     
Sbjct: 241 DLSAQLYEIKVRRHDVEKYANKPKEEVVYFTPADLVGDDCD---EPYWKQIRPLVDSHAD 297

Query: 291 SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350
           S+           KT+R+QL  Y A I++                         +   + 
Sbjct: 298 SKFFL------SSKTIREQLGTY-AHIMF-------------------LSDWLSDLLLMS 331

Query: 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFG 410
           +  + Q    LE    +  +A   +    LD     S  V L   + K   L+++   + 
Sbjct: 332 KGQTTQAPRLLEPTYRLKINASIKSLNALLD-----SNDVPLSQSTPKFQALVKILSKYE 386

Query: 411 --KSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTSVDA------LTPK 461
             K+     IIFVER   A+++   + +   L   +    LTG   +V +      +  K
Sbjct: 387 NMKAEDFHAIIFVERRTHAQLLNSLISRCAKLKGFIKPGALTGHGGTVASSGGNRGMDSK 446

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q + +E FR  ++NL  AT+V EEG+    C  VIRFD    ++++             
Sbjct: 447 SQNQTVEKFRNREINLAIATNVAEEGLDFRACRLVIRFD---DITTW------------- 490

Query: 522 FILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASV 581
                 +G  + R +L+     E  ++D  L   P+             + + +   A +
Sbjct: 491 ------KGE-ELRTQLYGRPEDE-EISDAELESTPQLI-----------NSLGDGKDAIL 531

Query: 582 TTDSSVNLIHRYCEMLPSDKYY-TPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSR- 639
           T ++SV+L++  C++LP D+Y    KP F+       + C +TLP  A     + P+ R 
Sbjct: 532 THNASVSLLNEVCQLLPHDEYAEILKPKFEDIQRSGGFVCRVTLPPMA----ALSPSERV 587

Query: 640 -------NKNLSKQLVCLEACEKLHQVGALNDHLLP 668
                   KN +KQ  C  AC  L   G L++H +P
Sbjct: 588 FESEPFTKKNKAKQSACFIACRALRSAGVLDEHFMP 623



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P    K    +P++ +RL        L ++I+      H+   L   ALT  G    + 
Sbjct: 898  LPSYFWKIFSFIPALTRRLHDASQVQALLKKIDVP----HVSLDLATMALTQPGIDVPWD 953

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             + LE +GD+ LK A S H++L++ KK EG +SA RS +V N  L        L  Y+  
Sbjct: 954  YQTLETVGDAFLKLATSVHVYLSHTKKGEGDMSALRSKSVDNEYLRSKSLQAGLGSYVLS 1013

Query: 1137 SAF 1139
            S +
Sbjct: 1014 SRY 1016



 Score = 43.1 bits (100), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 68/189 (35%), Gaps = 62/189 (32%)

Query: 1257 IESKIGYEFTVKFLLQEAITHASVQEF----------------------YCYQN------ 1288
            ++ KIGYEF    LL +A+TH S   F                      +CY+       
Sbjct: 1110 LQHKIGYEFKQPLLLMQALTHRSADSFLTNCYEREEWLGDAIVDLWITEHCYRRFSDSTA 1169

Query: 1289 -------------------------LYKHLQHCSTLL-------LSQITEYVKSFPKPGE 1316
                                     L+K +QH S          L  I  +++       
Sbjct: 1170 AQLTFTRASLVTNASLGYLSLKKLGLHKMIQHDSRHFEKACDDALRDIESFIEVGSFYDN 1229

Query: 1317 TTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PL 1374
             T+S      PK LGD LE+IVGA+ ID  L+L   +R    I   ++   K + P  P+
Sbjct: 1230 LTNSFIVFDPPKILGDALEAIVGAIFIDCGLHLSVAYRSLDKIFEDVLPRLKQDEPRDPI 1289

Query: 1375 RELIELCDS 1383
              L+   D+
Sbjct: 1290 SLLLRTRDT 1298


>gi|154300125|ref|XP_001550479.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10]
          Length = 1398

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 188/683 (27%), Positives = 308/683 (45%), Gaps = 114/683 (16%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQL++ E + +RN I  ++TG+GKT +AV+ I    + +K     K+I FLAPTV L
Sbjct: 73  PRTYQLEMLEESLKRNVIVAMDTGSGKTHVAVLRILAELERMKPG---KIIWFLAPTVAL 129

Query: 106 VHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRKAF 163
             Q ++ ++++     ++   GA GVD W  Q  W   +    V+V + Q+LLDAL   F
Sbjct: 130 CAQHHEYLQLNIPSVLIKMLIGADGVDRWTEQRQWDTVLKDVKVVVSSYQVLLDALTHGF 189

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN---KPKVFGMTASPVVRKGVSSAM 220
           + +  +  I+ DE H+     P  KIMK FYH   +    P + G++ASPV+R    S  
Sbjct: 190 VRMGRLSLIIFDEAHNCVNKAPGAKIMKSFYHPYKSIFPLPHILGLSASPVMRSSPQS-- 247

Query: 221 DCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
                +S++E TLD+   T +  + ++ + V     S  +Y               +  +
Sbjct: 248 -----LSDIEETLDAICCTPKIHRADLRLRVKLPLLSIIYYTPES----------NIIVT 292

Query: 280 KFDASLSKLQGSQLNCYKD-------MDDKHKTLR------KQLSDYHAKILYCLD---- 322
           K  ASL K+  S LN ++D         D  K+ R      K    Y    L  +D    
Sbjct: 293 KTVASLRKIVQS-LNIFEDPYVLTLKRSDSEKSQRELAKVLKSFKTYSQTQLKSIDKTSN 351

Query: 323 -----ELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADK 377
                ELG   A   +   + + LKA          S +  + +E+         P A+K
Sbjct: 352 EIILVELGPWAADYYISTVVTRYLKAM---------SAKDTFIVEDS--------PAAEK 394

Query: 378 IFL-----DFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432
           +++           S   D G IS K+ +LL +     +      IIFV+      V+  
Sbjct: 395 LYIAKALRQVEISPSTLSDTGKISNKVEKLLGIIAQ--QKPPFSAIIFVQERATVSVLAH 452

Query: 433 FVKKVPFLT-HLTVAYLTGSTTS---VDALTPKV----QKEVLESFRGGKVNLLFATDVI 484
            +   P       +  + G++ +    D +   V    QK+ L SF+ GK+++L AT+V+
Sbjct: 453 LLSHHPLTKDRFKIGTMVGTSLNGKRTDQIGELVDVNQQKDTLSSFKRGKIDILIATNVL 512

Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGN---------LKQRN 535
           EEG+ VP C+ VI F  P  + S++Q RGRARQ +S+ IL+   G+          K R 
Sbjct: 513 EEGIDVPACNLVICFSKPANLKSFVQRRGRARQQDSKLILLDASGDKATNWHELERKMRE 572

Query: 536 KLFDIIRSERSV--TDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRY 593
           +    +R  + +   +TA  +  +   L+           +ESTGA +  DS++  ++ +
Sbjct: 573 EYGKEMRELQHIYEIETADEQSEDDRVLR-----------IESTGAQLDLDSALPHLYHF 621

Query: 594 CEMLPSDKYYTPKPIFKYKS--AEEAYECELTLPSNA--PFQTIVGPTSRNKNLSKQL-- 647
           C +L +  +   +P F Y S    E    ++ LP +   P +      SR   LS++   
Sbjct: 622 CSVLTTKDFVDLRPDFVYSSELGSEYVRAKVILPGSVSKPLRV---HESRGSWLSERSAA 678

Query: 648 --VCLEACEKLHQVGALNDHLLP 668
                EA   L++ G +ND+LLP
Sbjct: 679 KDAAFEAYSALYRGGLVNDNLLP 701



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 101/274 (36%), Gaps = 79/274 (28%)

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIP-SSLILEA 1065
            +P    V+  +P  + +   ++PS+   +E  ++  +L   I    ++  I   SLI  A
Sbjct: 917  LPASTCVQDVMPAQLSRFGMMIPSITHHIEVQLVVDRLSRTI---LKDLEISDQSLIQTA 973

Query: 1066 LTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG 1125
            +T        + +RLE LGDS+LK   S  L   +   HEG LSA +   V NS   +  
Sbjct: 974  ITHASYSLDSNYQRLEFLGDSILKLCTSVQLVAEHLDWHEGYLSAMKDRIVSNSRSSRAA 1033

Query: 1126 TDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPC 1185
             +  L  YI    F   +W        RP+     VD L V                   
Sbjct: 1034 AEVGLDEYIMTKKFTGAKW--------RPM----YVDDLVV------------------T 1063

Query: 1186 DMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLR 1245
            +   R M SK ++D  EALIG                                   ASLR
Sbjct: 1064 EQKTREMSSKILSDVVEALIG-----------------------------------ASLR 1088

Query: 1246 SYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
                       +E  + Y FT K LL EA+TH S
Sbjct: 1089 P----------VEQILAYTFTKKSLLVEAMTHPS 1112


>gi|449549195|gb|EMD40161.1| hypothetical protein CERSUDRAFT_112373 [Ceriporiopsis subvermispora
           B]
          Length = 1511

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 198/725 (27%), Positives = 320/725 (44%), Gaps = 105/725 (14%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ ++ + + RRN +  ++TG+GKT IAV+ +K  A+       +K+  FLAPTV LV
Sbjct: 23  RGYQKEMLDESLRRNIVIAMDTGSGKTHIAVLRMKLEAE----RETQKISWFLAPTVALV 78

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            QQ +VI       V    GA   ++W D+  W+K I  + ++V TPQ+LLDAL  A++ 
Sbjct: 79  EQQREVIASAIPVSVGIISGASEPNQWKDANLWRKIIQTHRIMVTTPQVLLDALHHAYID 138

Query: 166 LDI-VCFIVIDECHHATGNHPYTKIMKEFY-----------HKSDNKPKVFGMTASPVVR 213
           L   +  +V DE HHA   HPY  +M  FY            +   +P + G+TASPV  
Sbjct: 139 LGRDIGLLVFDEAHHAVKVHPYNAVMSNFYFDLPPRDPTRGSQGRVRPMILGLTASPVYG 198

Query: 214 KGVSSAMDCEGQISELESTLDSQVFTI---EDKTEMEVFVPSAKE---SCRFYDQSKFCG 267
             V  +         LE  LDS + +    +D+    V  P  +    +   YD      
Sbjct: 199 GNVDKSFMV------LEKNLDSVIRSTRLNQDELAQHVHRPVFQHLLYTIPEYDWDHIPS 252

Query: 268 SDLKG------KLEVSWSKFDASLSKLQGSQLNCYKDMDDK-------HKTLRKQ----- 309
            + +        L +    + ASL +    QL      D++        KT+ K+     
Sbjct: 253 RNYQALRAVVDSLNIEDDPYVASLRQ----QLAKLPPGDERVRVDQKLSKTIGKEDTFTH 308

Query: 310 --LSDY-HAKILYCLDELGLICA-YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL 365
             L D+  A    CLD LG+  A +  V++     + A     +      + K +L  ++
Sbjct: 309 KGLRDFARAAQEICLD-LGVWAADWYIVEVIKRAKIAADPYNNVMSNWQEKEKRYLLSII 367

Query: 366 HVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS-FGKSTQ----VLCIIF 420
             + + LP           D ++ + L   S+K+H L+   LS + K+         ++F
Sbjct: 368 GRVQAVLP----------SDNTEDIRLRS-SSKVHRLVGGLLSEYAKAESEGETYSGLVF 416

Query: 421 VERIIAAKVVERFVKKVPFLTH-LTVAYLTGSTTSVD---------ALTPKVQKEVLESF 470
           V R      +   + + P +     +  L GS+ S           ++    Q   L  F
Sbjct: 417 VTRRDTVVALSELLSRFPEVAQRFNIGCLLGSSNSFQRHSFLDITRSIPKDSQSATLRDF 476

Query: 471 RGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGN 530
           + G  NL+ +T V EEG+ +  C  VIRFD P  + S+ QSRGRAR+  S FILM E G 
Sbjct: 477 KIGDKNLIISTSVAEEGIDIQACGSVIRFDPPVNMVSWAQSRGRARRKKSTFILMFEDGG 536

Query: 531 LKQR-NKLFDIIRSERSVTDTALSRD-PEACFLKACTYVKTKSYIVESTGASVTTDSSVN 588
           +  +  + ++ I +        +SRD   A   +     +++ Y+VESTGA +T  S+ +
Sbjct: 537 VHHKLVQQWEDIEARMMALYNDVSRDAASAPEPEDDEDDESEEYVVESTGAVLTLHSATS 596

Query: 589 LIHRYCEMLPSDKYYTPKPIFKYKSAE---------EA-------YECELTLPSNAPFQT 632
            ++ +C +LPS  +    P++     E         EA       +  ++TLP   P   
Sbjct: 597 HLNHFCSVLPSAHHGDFLPVYDLDPPEFPEGWHVTREAVPIYTGPWGAKVTLPRALPKDL 656

Query: 633 IVGPTS---RNKNLSKQLVCLEACEKLHQVGALNDHLLP--SVEEPSENNLISKKNESLP 687
            V  T     +K  + +    +A   LH+ G LND+LLP  SV EP  +  + +  E + 
Sbjct: 657 RVFSTECVYGSKRSAHRHAAFKAYVALHKAGLLNDNLLPLTSVVEPDRDGEVKRLLEEVE 716

Query: 688 GAGTT 692
              +T
Sbjct: 717 KRAST 721



 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 136/306 (44%), Gaps = 20/306 (6%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDS 1086
            L+PS+M+     +    LR+++   +    +P +L+  A T     E  + +RLE LGD+
Sbjct: 976  LIPSIMRWCSITLTVMSLRKQLLAKNPISEVPLALLTTATTAPVAQEQTNYQRLETLGDT 1035

Query: 1087 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRW-- 1144
            VLK+  S  LF  YP  HEG L+ R+  AV N+ L +    + L  +I    F PR+W  
Sbjct: 1036 VLKFLASLQLFAQYPLWHEGYLARRKDHAVSNARLAREALGKCLYRWIIRERFVPRKWKP 1095

Query: 1145 ---VAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCA 1201
               V      +         +   +P++ +    DT++          + + +K +AD  
Sbjct: 1096 LYRVQEPSTIITNAEHSISSEQDSIPVEAEQEV-DTELQKKLKKKKQSQQLSTKVLADVV 1154

Query: 1202 EALIGAYYVGGGL-----IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD 1256
            EALIGA Y  GG       AAL+ M   G+        + + + R       P   ++  
Sbjct: 1155 EALIGASYEHGGFDLAADCAALFGM---GLTWKKVPDRISEILARTEPLEEPP--TQLYL 1209

Query: 1257 IESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVKSFPKPG 1315
            +E  + Y F  K LL EA+THAS    +   + Y+ L+      L   +T+Y+  +  PG
Sbjct: 1210 VERILNYTFKRKELLVEALTHASYHGEHAAMS-YERLEFLGDCALDMVVTDYL--YHAPG 1266

Query: 1316 ETTDSG 1321
            +    G
Sbjct: 1267 KEYTPG 1272


>gi|303315249|ref|XP_003067632.1| Type III restriction enzyme, res subunit family protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240107302|gb|EER25487.1| Type III restriction enzyme, res subunit family protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 1448

 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 201/806 (24%), Positives = 350/806 (43%), Gaps = 93/806 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQL++   + R+N I  ++TG+GKT IA++ I+   + ++     K + F+APTV LV
Sbjct: 48  RGYQLEMLSESLRQNIIVAMDTGSGKTEIAILRIQ---RELERCPAHKFVWFMAPTVALV 104

Query: 107 HQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRKAFL 164
            QQ+  I      F+     GA  V  W ++  W   +    +++ TPQ+LLDAL   F+
Sbjct: 105 EQQHSAISKQLPAFQTRLLTGAANVSHWSTKKIWDDILLNIRIVISTPQVLLDALSNGFV 164

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYH------KSDNKPKVFGMTASPVVRKGVSS 218
           +L  +  +V DE HH   + P  +IM++FYH       +D  P + G+TASP  R     
Sbjct: 165 NLHTISLLVFDEAHHCVRDAPANRIMRDFYHYHRQEEGTDGLPHILGLTASPTTRAR--- 221

Query: 219 AMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCG-SDLKGKLEV 276
               +  +  LE  L++   T +  + EM  F+    E C    Q      S +  KL V
Sbjct: 222 ----QTDLEVLEINLNAVCVTPKMHREEMMQFI-HMPEYCSIEYQPDVQNFSSIVEKLSV 276

Query: 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC 336
             ++ D     ++      +    +  K+ ++ L  +  K   CLD+L         K C
Sbjct: 277 IINELD-----IENDPFVKFMRRRNDLKSRQRLLDAFENKKTPCLDQL---------KRC 322

Query: 337 LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALP-LAD------KIFLDFGFDYSKA 389
           L +      E   +       +  +      I ++ P  AD         L+       +
Sbjct: 323 LRRSRVIHRELGPWASERFLTRCIMGLKSKQINASGPQWADWDREDNSYMLNVLSQVVSS 382

Query: 390 VDLGY------ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL 443
            ++G       +S K+H+L+  FL        + I+F E      ++ + +   P   H+
Sbjct: 383 TEMGVQNPPDELSRKVHKLID-FLVLEHVNGSIGIVFAEERTIVIMLAQLLSLHPRTKHI 441

Query: 444 TVAYLTGSTTSV-------DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496
                 GS+ SV       +   P  Q   ++  R GK +L+ AT V+EEG+ VP C  V
Sbjct: 442 KTTAFLGSSASVSRKSDITELHNPIDQSTAIDDLRTGKKDLIIATAVLEEGIDVPICDLV 501

Query: 497 IRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDP 556
           I FDLPK + S+IQ RGRAR+  S+F L L   +    ++L  +   E+++    L    
Sbjct: 502 ICFDLPKDLRSFIQRRGRARKKGSKFALFLHSEDRATSSELHLM---EKTMKQLYLENKR 558

Query: 557 EACFLKACTYVKTKSY---IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKS 613
               ++    V+ + Y    V STGA +T  ++ N +  +C  L S ++    P F  + 
Sbjct: 559 TLEHIQYLENVEEEGYDGFRVASTGALLTLSNARNHLSHFCGTL-SAEFIATDPEFVLEG 617

Query: 614 AE-EAYECELTLPSN-----APFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
            +   +  ++ LPS        F+ I+    + + ++K+    +A   L++ G +ND+L+
Sbjct: 618 DDTTGFSAKVILPSFLDPKLREFRGIL--LWKTEKMAKRDASFQAYVALYEAGLVNDYLM 675

Query: 668 PS---VEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN 724
           P+   +++      + K+      +G+          P  A++ +W E      H Y+  
Sbjct: 676 PAHHHIDDEDGLEQVEKRPSFAKASGS--------LNPWAAIAKKWREAK----HFYQNL 723

Query: 725 FACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAK 784
              S   +     V+++  EL  D+ +F L  +    T+  +V   GQ    AD +  A 
Sbjct: 724 IEISAGAQALPPMVMVLPVELPCDI-SFRL-FWNEHSTLLVSVKRGGQ-DFAADLIRPAA 780

Query: 785 CFQELFFNGLFGKLFVKSKSSGSREF 810
               +  + LF +  V     GSR+F
Sbjct: 781 DTTSILLSSLFSQKMV----PGSRDF 802



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 124/277 (44%), Gaps = 35/277 (12%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+   +    +P ++  +E+  +A++L + I  H   F    SL+L A+++    E+ +
Sbjct: 932  LPVEYSQFALFIPCLIHSIENYFIANELAQTI-LHPVGFS-NLSLVLTAISSSAAREASN 989

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +RLE LGDS+LK   S  L   +P   EG+L+ R+   V N  L        L  +I  
Sbjct: 990  YQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKGNVVSNGYLANAALQTGLDKFILT 1049

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
              F   +W        RP      ++T ++       T+ T            R M +K 
Sbjct: 1050 KPFTGAKW--------RPSYNTDHINTGDM-------TEPT------------REMSTKV 1082

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDC--ITRASLRSYVPRINE- 1253
            +AD  EALIGA  + GG    L  +K      D++ S +++C  I      S+    N  
Sbjct: 1083 LADVVEALIGAANIDGGENKILNCLKIFI--PDIKWSPLNECVNILHHQQDSFSDENNNM 1140

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHASVQ-EFYCYQNL 1289
            + +IE  +GY F  K LL  A+TH S +   + YQ L
Sbjct: 1141 LSEIEGLVGYTFKKKPLLLAAVTHPSSKGSGHSYQRL 1177


>gi|226286856|gb|EEH42369.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1450

 Score =  191 bits (485), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 165/671 (24%), Positives = 299/671 (44%), Gaps = 80/671 (11%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F PR YQL++ E + + N I  ++TG+GKT IA++ I+     +++    KL+ FL PTV
Sbjct: 28  FTPRAYQLEMLEASLKENIIIAMDTGSGKTQIAILRIR---HELETCTEDKLVWFLTPTV 84

Query: 104 HLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRK 161
            L  QQ+  I      ++     G   V  W ++  W   +    ++V TPQILLDAL  
Sbjct: 85  ALADQQHKNISQQLSVYQTRLLLGTDKVHYWSTKKIWDDVLLNIKIVVSTPQILLDALSH 144

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-------PKVFGMTASPVVRK 214
            F+++  +  +V DE HH  G  P   IM+ FYH+   +       P + G+TASPV R 
Sbjct: 145 GFITMSRISLLVFDEAHHCDGFSPANTIMQRFYHEQLQRTGTKTDLPHILGLTASPVTRA 204

Query: 215 GVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273
              S       +  +E  L+++  T    + E+  +V   +     +       SD+   
Sbjct: 205 DPES-------LKRVEKNLNARCETPRIHREELMRYVHRPELYTVKFRTDSLIHSDML-- 255

Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
                     +LS++ G+ ++  KD   K +  R++      K+LY L++    C  +  
Sbjct: 256 ---------QNLSRIVGT-VDIEKDPWIK-RLRRQEDRRSQGKLLYALEKRKTHCLSQLS 304

Query: 334 KICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV--- 390
           K+ L + +   ++   +   +     F+ EV+  + +   +   + L    D  +     
Sbjct: 305 KL-LRQAINVHDDLGPWAADA-----FISEVIERLETKRTMYQHVELHSSLDREEEAFIF 358

Query: 391 -----------------DLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERF 433
                            +   +STK++ L++L  S   +     IIF ++     ++   
Sbjct: 359 ELLSELSISPVKQDWDSESNIVSTKVNLLVELLES-EHTADFTGIIFAQQRATVTMLSHL 417

Query: 434 VKKVPFLTHLTVA--------YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE 485
           + + P L  + V         Y + ++T  +    + QK  ++  R GK NLL AT V+E
Sbjct: 418 ISRHPRLKDIIVTGAFLGDACYASRTSTITEVHDTRSQKGSIDDLRSGKKNLLIATSVLE 477

Query: 486 EGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSER 545
           EG+ V  C  V+ FD  K + S+IQ RGRAR+  S+F++ L+   + +  +   +    R
Sbjct: 478 EGIDVSACHLVVCFDAIKNLRSFIQRRGRARKERSKFVMFLDSDKISEEKQWTRLEEVMR 537

Query: 546 SVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYT- 604
           S+ +  + R  +    +       +   +ESTGA +T +++   +  +C  L    +Y  
Sbjct: 538 SIYEDDMRRLEDVMARENIVEEGDQYLRIESTGALLTLENARQHLEHFCATL----HYAF 593

Query: 605 ----PKPIFKYKSAEEAYECELTLPS--NAPFQTIVGPTS-RNKNLSKQLVCLEACEKLH 657
               P  IF     +     ++ LP+  +  F+ I G    + + ++++    +A  KLH
Sbjct: 594 TDSRPHFIFDESEGDGTIAAKVVLPNVLDPKFRVIHGSKRWKTEQMAQRDASFQAYLKLH 653

Query: 658 QVGALNDHLLP 668
             G +ND+LLP
Sbjct: 654 NEGLVNDYLLP 664



 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 115/276 (41%), Gaps = 55/276 (19%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+       L PS++ ++E+ ++A +L + I   S       +L++ AL      E+ +
Sbjct: 920  LPLEYTMFSLLCPSIIHKVETFLIAEELNKTIL--SPVGFTDLNLVITALCAPDAREATN 977

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +R+E LGDS+LK+  S  L    P  HEG LS  +   V N  L     +  L  +I  
Sbjct: 978  YQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKDEVVSNKRLSYAAIETGLDKFIFM 1037

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
              F   +W        RP   +  V+  ++P                      R M +KT
Sbjct: 1038 DIFTGVKW--------RPRYNKAHVEEQDIP---------------------RREMSTKT 1068

Query: 1197 IADCAEALIGAYYVGGG-------LIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP 1249
            +AD  EAL+GA  + GG       L   L  ++W+      +           +L + VP
Sbjct: 1069 LADVIEALLGAATIDGGRTKVEKCLKIFLPEIRWMPFADRFD-----------ALYNSVP 1117

Query: 1250 RINE------IKDIESKIGYEFTVKFLLQEAITHAS 1279
             + E       +DIES +GY F  K  L +A TH S
Sbjct: 1118 EVYENLPSSWFRDIESLVGYIFNKKVFLAQAFTHPS 1153


>gi|327303976|ref|XP_003236680.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892]
 gi|326462022|gb|EGD87475.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892]
          Length = 1460

 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 180/666 (27%), Positives = 297/666 (44%), Gaps = 77/666 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQ ++ E + ++N I  ++TG+GKT IA++ I+     ++     KL+ FLAP V L
Sbjct: 82  PRGYQREMLEASIKQNIIVAMDTGSGKTQIAILRIR---HELERCSNDKLVWFLAPKVPL 138

Query: 106 VHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRKAF 163
             QQY  I      ++ +   GA  ++ W +Q  W   +    ++V TPQILLD L   F
Sbjct: 139 AEQQYRAISEQLPAYQTKILTGADNLERWSTQQIWDAFLLNTRIVVSTPQILLDVLSNGF 198

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-------KSDNKPKVFGMTASPVVRKGV 216
           ++L  +  +V DE HH     P  KIMK FYH       ++++ P + G+TASP  R   
Sbjct: 199 ITLRRIALLVFDEAHHCVKASPENKIMKNFYHARIDQLSETNDLPSILGLTASPTSRL-- 256

Query: 217 SSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275
                 E  + +LE  LD+   T    + EM  +V   +     Y +      ++K K  
Sbjct: 257 -----IEDSLRQLEQNLDAFCKTPAIHREEMMQYVHIPELLKVSYQKDSIIPHNMKMKYL 311

Query: 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLR------------KQLSDYHAKILYCLDE 323
                 D             YK   D+  T R             QL     K+ +   E
Sbjct: 312 HMLDDIDIESDPF----FQRYKGKTDRKSTERFLCALARKTPCLDQLKRCFTKVSHMYGE 367

Query: 324 LGLICA----YEAVKICLEKVLKA--QEECEIYR-QSSLQCKYFLEEVLHVIGSALPLAD 376
           LG   +     E  +   EK  K   Q   E  R  SS  C   LE V+ ++G       
Sbjct: 368 LGHWASSTYISEIYRRTREKRAKLVDQNWSEWDRDDSSFMCNA-LEPVVAIMGERC---- 422

Query: 377 KIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436
                    ++   D   +S K+  L+ L LS   +     IIFVE+   A ++   +  
Sbjct: 423 ---------WNSTPDA--VSPKVEHLVDL-LSSELTGASRGIIFVEQRATAVMLSHLIAH 470

Query: 437 VPFLTHLTVAYLTGSTTSVDALT-------PKVQKEVLESFRGGKVNLLFATDVIEEGMH 489
            P L H+   Y  G++   D          P   K+ ++  + GK NLL AT V+EEG+ 
Sbjct: 471 YPELAHIKSDYFLGNSAFSDRKADITEISKPGDMKDSIDDLKSGKKNLLVATSVLEEGID 530

Query: 490 VPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML---ERGNLKQRNKLFDIIRSERS 546
           V  C  V+ FD PK + S++Q RGRAR+ +S+F++     +    K    + DI++ ER 
Sbjct: 531 VSACDLVVCFDPPKQLRSFVQRRGRARKKSSKFVIFYAEDDTATYKDWEAMEDIMK-ERY 589

Query: 547 VTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYT-P 605
           +++       +         ++ +S+ +ESTGA +T  ++   +  +C  +P +   T P
Sbjct: 590 LSNKEFIDRLQE--EDDEDEIEYESFRIESTGALLTLANARAHLSHFCSTIPCEFTDTQP 647

Query: 606 KPIFKYKSAEEAYECELTLPS--NAPFQTIVGPTS-RNKNLSKQLVCLEACEKLHQVGAL 662
             I      ++    ++ LP+  +  F+   G  + + + ++K+    +A  +L++VG +
Sbjct: 648 DFIISKSGIKDMLTAKVLLPTVLDLQFREFEGIQAWKREKMAKRDAAFQAYLQLYEVGLV 707

Query: 663 NDHLLP 668
           NDHL+P
Sbjct: 708 NDHLMP 713



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 116/276 (42%), Gaps = 51/276 (18%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+   K    +PS++  +   +LA +L + I       +I   L+L A+T     E  +
Sbjct: 966  LPVGFAKFALFIPSLIHTIGRYLLAEELSKTILSPIGFQNI--QLVLTAITAASAREDIN 1023

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +RLE LGDS LK   S  L   +P  HEG LS ++   V NS L K   D  L  +I  
Sbjct: 1024 YQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKDSIVSNSRLWKAAVDTGLDQFILT 1083

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
            + F   +W                      PL    +T +     GK  +   R + +KT
Sbjct: 1084 TCFTGAKW---------------------RPLYNSTYTNN----AGKIGEKSTRELSTKT 1118

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMK-------WLGIDADLEV------SLVDDCITRAS 1243
            +AD  E+LIGA  + GG    L+ ++       WL     +E+         DDC     
Sbjct: 1119 LADVVESLIGAAIIDGGENKVLHCLELFLPEINWLPSGERIEILYDSALDFNDDC----- 1173

Query: 1244 LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
                 PR + +  +E  I Y FT K LL  +++H S
Sbjct: 1174 -----PR-DILSKVEPLIEYSFTKKALLAASLSHPS 1203


>gi|408394282|gb|EKJ73491.1| hypothetical protein FPSE_06330 [Fusarium pseudograminearum CS3096]
          Length = 1451

 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 198/720 (27%), Positives = 320/720 (44%), Gaps = 84/720 (11%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQ ++ E + +RN I  ++TG+GKT +AVM I+     + +    K++ FL  TV L
Sbjct: 78  PRGYQREMLEQSIKRNVIVAMDTGSGKTQVAVMRIQ---HELDTCAPDKIVWFLGKTVSL 134

Query: 106 VHQQYDVI-RVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
             QQY V+ R      ++   G   +D W    W + +N   ++V T  IL DAL  AF+
Sbjct: 135 CEQQYSVVQRQMPSVSMKLLTGQLNIDAWSEDVWPRILNGTRIIVSTFDILRDALDHAFV 194

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVSSAM 220
            ++++  IV DE H+   N    KIM  FYH+  N     P + G+TASP+  K      
Sbjct: 195 KMNMLSLIVFDEVHNCVKNSSGRKIMVNFYHEHKNAGMPVPAILGLTASPIQSKS----- 249

Query: 221 DCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYD-QSKFCGSDLKGKLEVSW 278
               +I ELE T+DS   T   ++ E+   V     S   YD +     + L   L+  +
Sbjct: 250 -NHDEILELEVTMDSVCITPTINRKELLQHVNKPNLSRVLYDVEEHPTRTPLMQTLQSEY 308

Query: 279 SKFDASL--SKLQGSQLNCYKDMDD--------KHKTL-RKQLSDYHAKILYCLDELGLI 327
           S  D +   S ++  QL    +           KH T  +KQL     K    LDELG  
Sbjct: 309 SAMDITQDPSIIKTKQLIAKGEKTGPEILSLLMKHGTFSQKQLKSLWNKSKDILDELGPW 368

Query: 328 CAYEAVKICLEKVLKAQEECEIYRQS-SLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
            A + +   +   LK  +    + +S S + + +L   L  I ++ P   K+        
Sbjct: 369 AADKYISELVSLFLKRFDSPMTFNESWSNEDRTYLAGHLRQIAAS-PHQPKL-------- 419

Query: 387 SKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH-LTV 445
               D   ++ K ++L+Q  L+  +   V+ IIFV    AA V+   +++ P +     V
Sbjct: 420 ---PDRHNLADKTNKLIQELLAADED--VVGIIFVRSRAAANVLCAILREHPEIRQRYRV 474

Query: 446 AYLTGSTTS------VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
             + GS  +      +    P    + L  F+ G +NLL +T V+EEG+ V  C+ VI F
Sbjct: 475 GSVVGSAANKIRKQNIYEYLPGATADTLRDFKTGAINLLVSTSVLEEGIDVAVCNLVICF 534

Query: 500 DLPKTVSSYIQSRGRARQHNSQFILMLER-GNLKQRNKLFDIIRS----ERSVTDTALSR 554
           D   T+ S+IQ RGRAR+  S+ I++     + ++ + L   ++S    ER   DT    
Sbjct: 535 DETTTLKSHIQRRGRARKQKSKMIVLARSTSDAREWDSLERDMKSRYEQEREELDT---- 590

Query: 555 DPEACFLKACTYVKTK-SYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYK- 612
                 ++A T   +  +Y V+ +GA +  ++S   +  +C  +    Y   +P++ +  
Sbjct: 591 ----LEIEARTEATSHFAYTVKKSGARLDLENSRQHLEHFCNKVFHRDYVDQRPVYIFHK 646

Query: 613 ----SAEEAYECELTLPSNAPFQTI----VGPTSRNKNLSKQLVCLEACEKLHQVGALND 664
               SA   +   +TLPS  P         G     KN  K+     A   LHQ G ++D
Sbjct: 647 TELGSAPPTFSATVTLPSGLPKHLRRCQGRGGWRSEKNAMKE-AAFHAFVILHQEGLVSD 705

Query: 665 HLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN 724
           HLLP         L +   E+      T  + L    P + ++ RW       L+AY+F+
Sbjct: 706 HLLP---------LNADSKEAEEEVQLTAPELLFD--PWKDIAQRWETTAEKWLYAYEFS 754



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 122/270 (45%), Gaps = 40/270 (14%)

Query: 1016 DVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPS-----SLILEALTTLG 1070
            +VP    K   L+PS++  LE  ++A++L       S     P       L++EA+++  
Sbjct: 944  EVPRRAAKCGMLIPSIIHELEVQLIANEL-------SSTLLAPVGITDLQLVIEAISSRS 996

Query: 1071 CCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKL 1130
              E    ER+E LGDSVLKY      +  +P   EG L+  +   V N+ L ++  +  L
Sbjct: 997  AAEPVDYERIEFLGDSVLKYCTVIQAYSEHPFWPEGLLNHFKDRLVSNTRLTRMCLETGL 1056

Query: 1131 QGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHR 1190
              +I    F   +W        RP+  +  +D                    KP D   R
Sbjct: 1057 SKFIFSKTFTGIKW--------RPLYRDEFLDK-------------------KPVDGVSR 1089

Query: 1191 WMGSKTIADCAEALIGAYYVGGGLIAALYMMK-WLGIDADLEVSLVDDCITRASLRSYVP 1249
            ++G KT+AD  EAL+GA Y  GG+  AL  +K +LG   +     V  CI   +  S VP
Sbjct: 1090 FIGPKTLADVVEALVGASYQDGGISKALECIKIFLGTKCNWHDDKVARCILFRAATSDVP 1149

Query: 1250 RINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
                ++ +E  IGY F  K LL EA+TH S
Sbjct: 1150 LPPTMEPLEELIGYTFEKKSLLIEAMTHGS 1179


>gi|389635425|ref|XP_003715365.1| dicer-like protein 2 [Magnaporthe oryzae 70-15]
 gi|374095503|sp|A4RHU9.3|DCL2_MAGO7 RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease DCL2; Includes: RecName:
           Full=ATP-dependent helicase DCL2
 gi|351647698|gb|EHA55558.1| dicer-like protein 2 [Magnaporthe oryzae 70-15]
 gi|440467937|gb|ELQ37130.1| hypothetical protein OOU_Y34scaffold00618g20 [Magnaporthe oryzae
           Y34]
 gi|440483523|gb|ELQ63906.1| hypothetical protein OOW_P131scaffold00922g30 [Magnaporthe oryzae
           P131]
          Length = 1485

 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 188/722 (26%), Positives = 315/722 (43%), Gaps = 94/722 (13%)

Query: 24  GSSGHDHAV------DGPSSSTNSI-NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIA 76
           GSS   H+       + P  S N   + I R YQL++F+ + ++N I  ++TG+GKT +A
Sbjct: 36  GSSASTHSTTDDAISEEPQPSGNGPRSIIARAYQLEMFQASMQQNIIVSMDTGSGKTQVA 95

Query: 77  VMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE---YYGAKGVDEW 133
           V+ I+     ++    +K + FLAPTV L  QQY+VIR  +  +V       G   VD W
Sbjct: 96  VLRIR---AELERTPPEKRVWFLAPTVALCAQQYEVIR--SQIKVANSIVMTGDDNVDSW 150

Query: 134 -DSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKE 192
            D Q W   +    V+V T  IL +AL  AF+++D +  +V+DE H+ TG  P   IMK 
Sbjct: 151 SDVQTWDAVLANVRVVVCTYMILFEALSHAFVTMDSISLLVMDEAHNCTGKFPGRLIMKR 210

Query: 193 FY----HKSDNKPKVFGMTASPVVRKGVSSAMD--------CEG---QISELESTLDSQV 237
           FY       D+ P + G+TASPV++  +SS  D        C G   Q  EL + +    
Sbjct: 211 FYMPRKSAGDHVPHILGLTASPVMKSDLSSMEDLESSLDSVCRGPTLQREELFANVHQPT 270

Query: 238 FTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV----------SWSKFDASLSK 287
            T+    E ++  P             F   D+     V          S  + D  L+K
Sbjct: 271 MTVTTYKECDLRSPVQYTRNMNNLHLAFENLDIAEDPYVLHLMGQRTPKSLRELDRILTK 330

Query: 288 LQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEEC 347
           L     N  K +  K  +L ++L  + A   Y  + +  +   +A    L   L  ++  
Sbjct: 331 LDTYTQNQMKALQRKSSSLFRELGQW-AVDSYIYNVVEKVSNLDARSSWLGGWLDDEQR- 388

Query: 348 EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFL 407
                       +L   +  I +ALP++  I          A ++   S KL  LL++  
Sbjct: 389 ------------YLHRAIQGI-NALPVSAAI---------PAPEM--TSIKLQVLLRILR 424

Query: 408 SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL--------TVAYLTGSTTSVDALT 459
            +  S   + I+FV+    A ++ + +  +P +           T  Y++      + L 
Sbjct: 425 GYEGSP--VGIVFVKERATAGILSQLLAIIPDINARYKVGCMVGTSRYMSRKMNIHEVLQ 482

Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
                  LE FR G +NLL AT V+EEG+ VP C+ VI FD+P  + S+IQ RGRAR   
Sbjct: 483 QGDDLLALEKFRSGAINLLVATSVLEEGIDVPVCNLVICFDMPANLKSFIQRRGRARMRE 542

Query: 520 SQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGA 579
           S+  LM+E  +L        +  + +   +  +        ++    +        +T A
Sbjct: 543 SKLHLMIEEDSLVSVKDWGALEAAMKQRYENDMRELDHLAQVEEEDEMDVPPLHSRTTAA 602

Query: 580 SVTTDSSVNLIHRYCEMLP-SDKYYTPKPIFKYKSAEEAY---------ECELTLPSNAP 629
            VT D +   +  +C ++  S +Y    P +   +   A+            + LP++ P
Sbjct: 603 KVTVDDAKGHLEHFCRVVTRSQQYVDASPEYLVTTKTTAFVGGKPIPILGVTVLLPASLP 662

Query: 630 FQTIVGPTSRN---KNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESL 686
                  +SR+   +  +K+   L+A + L++ G +N+HLLP      E++ + ++ +  
Sbjct: 663 PNLRQAHSSRDWISERNAKKDAALQAYKMLYEAGLINEHLLPI----RESDFVDREVDGR 718

Query: 687 PG 688
           PG
Sbjct: 719 PG 720



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 129/294 (43%), Gaps = 54/294 (18%)

Query: 997  NTKKPQMHVHMPPELLVRVD-VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNF 1055
             T  P+   ++ PE L   D VP ++V+   L+PS+ Q +E   +A +L       S +F
Sbjct: 943  QTSSPRRFDYIIPEQLCTFDTVPATLVQLGMLVPSITQAMEPYFVAQELLRRTALGSLDF 1002

Query: 1056 HIPSSLILEALTTLGCCESFSMERLELLGDSVLKY--AVSCHLF-LTYPKKHEGQLSARR 1112
                 L++  +T+       + ER+E LGD+VLK   AV+C    L +P   EG LS  +
Sbjct: 1003 K-DIDLVMMVITSSSAGRLTNYERVEFLGDAVLKLGAAVTCATNNLHFP---EGYLSLLK 1058

Query: 1113 SWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKF 1172
               V NS L K  T   L  +I    +  ++W     +   P P                
Sbjct: 1059 DRLVSNSRLCKAATALGLDQFIITRQYSLKQW---RNMLTAPEP---------------- 1099

Query: 1173 FTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMM-------KWLG 1225
                       P +   R M SKT+AD  EALIGA Y+ GG+  AL  +       +W  
Sbjct: 1100 -----------PTNT--RKMSSKTLADVTEALIGAAYIEGGMSKALRCISLMIPNERWRS 1146

Query: 1226 IDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
            +D    V      + + +L   +P  + +  +E  +GY F  K LL EAITHAS
Sbjct: 1147 LDESRAV------LYQVALND-IPLPSTLGPLEELLGYSFNKKSLLIEAITHAS 1193


>gi|320035561|gb|EFW17502.1| RNA helicase/RNAse III [Coccidioides posadasii str. Silveira]
          Length = 1448

 Score =  191 bits (484), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 200/806 (24%), Positives = 350/806 (43%), Gaps = 93/806 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQL++   + R+N I  ++TG+GKT IA++ I+   + ++     K + F+APTV LV
Sbjct: 48  RGYQLEMLSESLRQNIIVAMDTGSGKTEIAILRIQ---RELERCPAHKFVWFMAPTVALV 104

Query: 107 HQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRKAFL 164
            QQ+  I      F+     GA  V+ W ++  W   +    +++ TPQ+LLDAL   F+
Sbjct: 105 EQQHSAISKQLPAFQTRLLTGAANVNHWSTKKIWDDILLNIRIVISTPQVLLDALSNGFV 164

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYH------KSDNKPKVFGMTASPVVRKGVSS 218
            L  +  +V DE HH   + P  +IM++FYH       +D  P + G+TASP  R     
Sbjct: 165 DLHTISLLVFDEAHHCVRDAPANRIMRDFYHYHRQEEGTDGLPHILGLTASPTTRAR--- 221

Query: 219 AMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCG-SDLKGKLEV 276
               +  +  LE  L++   T +  + EM  F+    E C    Q      S +  KL V
Sbjct: 222 ----QTDLEVLEINLNAVCVTPKMHREEMMQFI-HMPEYCSIEYQPDVQNFSSIVEKLSV 276

Query: 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC 336
             ++ D     ++      +    +  K+ ++ L  +  K   CLD+L         K C
Sbjct: 277 IINELD-----IENDPFVKFMRRRNDLKSRQRLLDAFENKKTPCLDQL---------KRC 322

Query: 337 LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALP-LAD------KIFLDFGFDYSKA 389
           L +      E   +       +  +        ++ P  AD         L+       +
Sbjct: 323 LRRSRVIHRELGPWASERFLTRCIMGLKSKQTNASGPQWADWDREDNSYMLNVLSQVVSS 382

Query: 390 VDLGY------ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL 443
            ++G       +S K+H+L+  FL        + I+F E      ++ + +   P   H+
Sbjct: 383 TEMGVQNPPDELSRKVHKLID-FLVLEHVNGSIGIVFAEERTIVIMLAQLLSLHPRTKHI 441

Query: 444 TVAYLTGSTTSV-------DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496
                 GS+ SV       +   P  Q   ++  R GK +L+ AT V+EEG+ VP C  V
Sbjct: 442 KTTAFLGSSASVSRKSDITELHNPIDQSTAIDDLRTGKKDLIIATAVLEEGIDVPICDLV 501

Query: 497 IRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDP 556
           I FDLPK + S+IQ RGRAR+  S+F L L   +    ++L  +   E+++    L    
Sbjct: 502 ICFDLPKDLRSFIQRRGRARKKGSKFALFLHSEDRATSSELHLM---EKTMKQLYLENKR 558

Query: 557 EACFLKACTYVKTKSY---IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKS 613
               ++    V+ + Y    V STGA +T  ++ N +  +C  L S ++    P F  + 
Sbjct: 559 TLEHIQYLENVEEEGYDGFRVASTGAFLTLSNARNHLSHFCGTL-SAEFIATDPEFVLEG 617

Query: 614 AE-EAYECELTLPSN-----APFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
            +   +  ++ LPS        F+ I+    + + ++K+    +A   L++ G +ND+L+
Sbjct: 618 DDTTGFSAKVILPSFLDPKLREFRGIL--LWKTEKMAKRDASFQAYVALYEAGLVNDYLM 675

Query: 668 PS---VEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN 724
           P+   +++      + K+      +G+          P  A++ +W E      H Y+  
Sbjct: 676 PAHHHIDDEDGLEQVEKRPSFAKASGS--------LNPWAAIAKKWREAK----HFYQNL 723

Query: 725 FACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAK 784
              S   + +   V+++  EL  D+ +F L  +    T+  +V   GQ    AD +  A 
Sbjct: 724 IEISAGAQAFPPMVMVLPVELPCDI-SFRL-FWNEHSTLLVSVKRGGQ-DFAADLIRLAA 780

Query: 785 CFQELFFNGLFGKLFVKSKSSGSREF 810
               +  + LF +  V     GSR+F
Sbjct: 781 DTTSILLSSLFSQKMV----PGSRDF 802



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 123/277 (44%), Gaps = 35/277 (12%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+   +    +P ++  +E+  +A++L + I  H   F    SL+L A+++    E+ +
Sbjct: 932  LPVEYSQFALFIPCLIHSIENYFIANELAQTI-LHPVGFS-NLSLVLTAISSSAAREASN 989

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +RLE LGDS+LK   S  L   +P   EG+L+ R+   V N  L        L  +I  
Sbjct: 990  YQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKGNVVSNGYLANAALQTGLDKFILT 1049

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
              F   +W        RP      ++T  +       T+ T            R M +K 
Sbjct: 1050 KPFTGAKW--------RPSYNTDHINTGNM-------TEPT------------REMSTKV 1082

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDC--ITRASLRSYVPRINE- 1253
            +AD  EALIGA  + GG    L  +K      D++ S +++C  I      S+    N  
Sbjct: 1083 LADVVEALIGAANIDGGENKILNCLKIFI--PDIKWSPLNECVNILHHQQDSFSDENNNM 1140

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHASVQ-EFYCYQNL 1289
            + +IE  +GY F  K LL  A+TH S +   + YQ L
Sbjct: 1141 LSEIEGLVGYTFKKKPLLLAAVTHPSSKGSGHSYQRL 1177


>gi|225684610|gb|EEH22894.1| dicer [Paracoccidioides brasiliensis Pb03]
          Length = 1415

 Score =  189 bits (481), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 165/663 (24%), Positives = 300/663 (45%), Gaps = 64/663 (9%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F PR YQL++ E + + N I  ++TG+GKT IA++ I+     +++    KL+ FL PTV
Sbjct: 28  FTPRAYQLEMLEASLKENIIIAMDTGSGKTQIAILRIR---HELETCTEDKLVWFLTPTV 84

Query: 104 HLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRK 161
            L  QQ+  I      ++     G   V  W ++  W   +    ++V TPQILLDAL  
Sbjct: 85  ALADQQHKNISQQLSVYQTRLLLGTDKVHYWSTKKIWDDVLLNIKIVVSTPQILLDALSH 144

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-------PKVFGMTASPVVRK 214
            F+++  +  +V DE HH  G  P   IM+ FYH+   +       P + G+TASPV R 
Sbjct: 145 GFITMSRISLLVFDEAHHCDGFSPANTIMQRFYHEQLQRTGTKTDLPHILGLTASPVTRA 204

Query: 215 GVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCGSDL--- 270
              S       +  +E  L+++  T    + E+  +V   +     +       SD+   
Sbjct: 205 DPES-------LKRVEKNLNARCETPRIHREELMRYVHRPELYTVKFRTDSLIHSDMLQN 257

Query: 271 ----KGKLEVSWSKFDASLSKLQG--SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDEL 324
                G +++    +   L + +   SQ      ++ +      QLS    + +   D+L
Sbjct: 258 LSRIVGTVDIEKDPWIKRLRRQEDRRSQEKLLYALEKRKTHCLSQLSKLLRQAINVHDDL 317

Query: 325 GLICAYEAVKICLEKVLKAQ---EECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLD 381
           G   A   +   +E++   +   +  E++     + + F+ E+L  + S  P+       
Sbjct: 318 GPWAADAFISEVIERLETKRTMYQHVELHSSLDREEEAFIFELLSEL-SISPVKQ----- 371

Query: 382 FGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT 441
              D+    ++  +STK++ L++L  S   +     IIF ++     ++   + K P L 
Sbjct: 372 ---DWDSKSNI--VSTKVNLLVELLES-EHTADFTGIIFAQQRATVTMLSHLISKHPRLK 425

Query: 442 HLTVA--------YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
            + V         Y + ++T  +    + QK  ++  R GK NLL AT V+EEG+ V  C
Sbjct: 426 DIIVTGAFLGDACYASRTSTITEVHDTRSQKGSIDDLRSGKKNLLIATSVLEEGIDVSAC 485

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALS 553
             V+ FD  K + S+IQ RGRAR+  S+F++ L+   + +  +   +    RS+ +  + 
Sbjct: 486 HLVVCFDAIKNLRSFIQRRGRARKERSKFVMFLDSDKISEEKQWTRLEEVMRSIYEDDMR 545

Query: 554 RDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYT-----PKPI 608
           R  +    +       +   +ESTGA +T +++   +  +C  L    +Y      P  I
Sbjct: 546 RLEDVMARENIVEEGDQYLRIESTGALLTLENARQHLEHFCATL----HYAFTDSRPHFI 601

Query: 609 FKYKSAEEAYECELTLPS--NAPFQTIVGPTS-RNKNLSKQLVCLEACEKLHQVGALNDH 665
           F     +     ++ LP+  +  F+ I G    + + ++++    +A  KL+  G +ND+
Sbjct: 602 FDESEGDGTIAAKVVLPNVLDPKFRVIYGSKRWKTERMAQRDASFQAYLKLYNEGLVNDY 661

Query: 666 LLP 668
           LLP
Sbjct: 662 LLP 664



 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 115/276 (41%), Gaps = 55/276 (19%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+       L PS++ ++E+ ++A +L + I   S       +L++ AL      E+ +
Sbjct: 920  LPLEYTMFSLLCPSIIHKVETFLIAEELNKTI--LSPVGFTDLNLVITALCAPDAREATN 977

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +R+E LGDS+LK+  S  L    P  HEG LS  +   V N  L     +  L  +I  
Sbjct: 978  YQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKDEVVSNKRLSYAAIETGLDKFIFM 1037

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
              F   +W        RP   +  V+  ++P                      R M +KT
Sbjct: 1038 DIFTGVKW--------RPRYNKAHVEEQDIP---------------------RREMSTKT 1068

Query: 1197 IADCAEALIGAYYVGGG-------LIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP 1249
            +AD  EAL+GA  + GG       L   L  ++W+      +           +L + VP
Sbjct: 1069 LADVIEALLGAATIDGGRTKVEKCLKIFLPEIRWMPFADRFD-----------ALYNSVP 1117

Query: 1250 RINE------IKDIESKIGYEFTVKFLLQEAITHAS 1279
             + E       +DIES +GY F  K  L +A TH S
Sbjct: 1118 EVYENLPSSWFRDIESLVGYIFNKKVFLAQAFTHPS 1153


>gi|342877213|gb|EGU78706.1| hypothetical protein FOXB_10811 [Fusarium oxysporum Fo5176]
          Length = 927

 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 185/721 (25%), Positives = 314/721 (43%), Gaps = 90/721 (12%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQ ++ E + +RN I  ++TG+GKT +AV+ I+     ++ +   KL+ FL  TV L
Sbjct: 69  PRAYQREMLEQSLKRNVIVAMDTGSGKTQVAVLRIQ---AELERSSPNKLVWFLGKTVSL 125

Query: 106 VHQQYDVI-RVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
             QQ++VI R      +    G   +D W  + W + +    ++V T  IL DAL  AF+
Sbjct: 126 CEQQFNVIKRQMPSVPMRLLTGQLNIDAWSPEVWPRILKGTHIIVSTFSILRDALDHAFV 185

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN----KPKVFGMTASPVVRKGVSSAM 220
           ++D++  IV DE H+   N    KIM  FYH+  N     P + G+TASP++   +    
Sbjct: 186 TMDMLALIVFDEVHNCVKNSSGRKIMMNFYHRHKNVGMPVPAILGLTASPIISSDLK--- 242

Query: 221 DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCR-FYDQSKFCG-SDLKGKLEVSW 278
               +I +LE+T+D+   T     E  +   +     R  YD +K    + L  +L+  +
Sbjct: 243 ----EIEKLENTMDAICVTPTTHREQLLKHVNKPHLIRLLYDATKIPPRTPLMQQLQSEY 298

Query: 279 SKFDAS----LSKLQGSQLNCYKDMDD------KHKTL-RKQLSDYHAKILYCLDELGLI 327
           S  D +    + KL+    N  K  +       KH T  ++Q+     K    L ELG  
Sbjct: 299 SNMDIAKDPEVLKLKALVSNDEKKREKLMNVIMKHDTFSQQQIRGLWNKSREILAELGSW 358

Query: 328 CAYEAVKICLEKVLKAQEECEIYRQS-SLQCKYFLEEVLH-----VIGSALPLADKIFLD 381
                +   ++  L   +    +  + S + + +L   L      V+ ++ P A  +   
Sbjct: 359 AVDHYISQMIKTFLDRIDAYSTFTDAWSNEDRTYLAGHLRRINIGVVDNSPPTAQTV--- 415

Query: 382 FGFDYSKAVDLGYISTKL-HELLQLFLSFGKSTQVLCIIFV-ERIIAAKVVERFVKKVPF 439
                       + +++L HELL           V+ IIFV ER  A  + E      P 
Sbjct: 416 -----------SHKTSRLIHELL------AAENDVVGIIFVKERTAAHTLCELLNNYPPI 458

Query: 440 LTHLTVAYLTGSTT------SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
                V  + G+++       V   +     +VL+ FR G +NLL AT V+EEG+ VP C
Sbjct: 459 RDRYHVGAIVGASSYGLQKQKVYEYSSGPGPQVLDDFRSGAINLLVATSVLEEGIDVPAC 518

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG-NLKQRNKLFDIIRSERSVTDTAL 552
           + V+ FD   T+ S+IQ RGRAR   S+ I +L    +++   +L   ++         L
Sbjct: 519 NLVVSFDEIATLKSFIQRRGRARMQESKMIALLSSSTDIRAWEELEKGMKERYEDDQREL 578

Query: 553 SRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYK 612
           +R  E         + +  YIV++TGA +  D++   + R+C+++    Y    P + + 
Sbjct: 579 ARLDEQA---RAEEIDSTYYIVKNTGARLDLDNARQHLDRFCQIVFRSDYVGQLPDYVFH 635

Query: 613 SAEEAY-----ECELTLPSNAP-----FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGAL 662
             E  Y        +TLP   P     F++  G  S    +       +A   L++ G +
Sbjct: 636 KEETPYGGPILRATVTLPGGLPLNLRTFKSACGWKSERNAMRD--AAFQAYVALYEAGLV 693

Query: 663 NDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYK 722
            D+L P +   SE   + +K + +P              P   ++ RW   C    + ++
Sbjct: 694 TDNLAP-LNAKSEK--VEEKTDLMPEP---------LFDPWVQIAQRWKSGCDKQFYLFE 741

Query: 723 F 723
           F
Sbjct: 742 F 742


>gi|442570278|sp|Q1DW80.3|DCL2_COCIM RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease DCL2; Includes: RecName:
           Full=ATP-dependent helicase DCL2
 gi|392868830|gb|EAS34630.2| dicer-like protein 2 [Coccidioides immitis RS]
          Length = 1435

 Score =  189 bits (479), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 205/826 (24%), Positives = 355/826 (42%), Gaps = 87/826 (10%)

Query: 33  DGPSSSTNSINFIP----RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK 88
           DG S S  ++  +P    R YQL++   + R+N I  ++TG+GKT IA++ I+   + ++
Sbjct: 32  DGTSKSQEAL--LPPRRARGYQLEMLSESLRQNIIVAMDTGSGKTEIAILRIQ---RELE 86

Query: 89  SNGFKKLIIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKND 146
                K + F+APTV LV QQ+  I      F+     GA  V  W ++  W   +    
Sbjct: 87  RCPAHKFVWFMAPTVALVEQQHSAISKQLPAFQTRLLTGAANVSHWSTKKIWDDILLNIR 146

Query: 147 VLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH------KSDNK 200
           +++ TPQ+LLDAL   F+ L  +  +V DE HH   + P  +IM++FYH       +D  
Sbjct: 147 IVISTPQVLLDALSNGFVDLHTISLLVFDEAHHCVRDAPANRIMRDFYHYHRQEEGTDGL 206

Query: 201 PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRF 259
           P + G+TASP  R         +  +  LE  L++   T +  + EM  FV   +     
Sbjct: 207 PHILGLTASPTTRAR-------QTDLEVLEINLNAVCVTPKMHREEMMQFVHMPEYRSIE 259

Query: 260 YDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILY 319
           Y       S +  KL V  ++ D     ++      +    +  K+ ++ L     K   
Sbjct: 260 YQPDVQNFSSIVEKLSVIINELD-----IENDPFVKFMRRRNDLKSRQRLLDALENKKTP 314

Query: 320 CLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALP-LAD-- 376
           CLD+L         K CL +      E   +       +  +        ++ P  AD  
Sbjct: 315 CLDQL---------KRCLRRSRVIHRELGPWASERFLTRCIMGLKSKQTNASGPQWADWD 365

Query: 377 ----KIFLDFGFDYSKAVDLGY------ISTKLHELLQLFLSFGKSTQVLCIIFVERIIA 426
                  L+       + ++G       +S K+H+L+  FL        + I+F E    
Sbjct: 366 REDNSYMLNVLSQVVSSTEMGVQNPPDELSRKVHKLID-FLVLEHVNGSIGIVFAEERTI 424

Query: 427 AKVVERFVKKVPFLTHLTVAYLTGSTTSV-------DALTPKVQKEVLESFRGGKVNLLF 479
             ++ + +   P   H+      GS+ SV       +   P  Q   ++  R GK +L+ 
Sbjct: 425 VIMLAQLLSLHPRTKHIKTTAFLGSSASVSRKSDITELHNPIDQSTAIDDLRTGKKDLII 484

Query: 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           AT V+EEG+ VP C  VI FDLPK + S+IQ RGRAR+  S+F L L   +    ++L  
Sbjct: 485 ATAVLEEGIDVPICDLVICFDLPKDLRSFIQRRGRARKKGSKFALFLHSEDRATSSELHL 544

Query: 540 IIRSERSVTDTALSRDPEACFLKACTYVKTKSY---IVESTGASVTTDSSVNLIHRYCEM 596
           +   E+++    L        ++    V+ + Y    V STGA +T  ++ N +  +C  
Sbjct: 545 M---EKTMKQLYLENKRALEHIQYLENVEEEGYDGFRVASTGALLTLSNARNHLSHFCGT 601

Query: 597 LPSDKYYTPKPIFKYKSAE-EAYECELTLPSN-----APFQTIVGPTSRNKNLSKQLVCL 650
           L S ++    P F  +  +   +  ++ LPS        F+ I+    + + ++K+    
Sbjct: 602 L-SAEFIATDPEFVLEGDDTTGFSAKVILPSFLDPKLREFRGIL--LWKTEKMAKRDASF 658

Query: 651 EACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRW 710
           +A   L++ G +ND+L+P+     + + + ++ E  P       K L    P  A++ +W
Sbjct: 659 QAYVALYEAGLVNDYLMPAHHHIDDEDGL-EQVEKRPSFA----KALGSLNPWAAIAKKW 713

Query: 711 GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSS 770
            E      H Y+     S   + +   V+++  EL  D+ +F L  +    T+  +V   
Sbjct: 714 REAK----HFYQNLIEISAGAQAFPPMVMVLPVELPCDI-SFRL-FWNEHSTLLVSVKRG 767

Query: 771 GQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRET 816
           GQ    AD +  A     +  + LF +  V      S  F  + E+
Sbjct: 768 GQ-DFAADLIRLAADTTSILLSSLFSQKMVPGSLDFSWLFLPQMES 812



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 124/277 (44%), Gaps = 35/277 (12%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+   +    +P ++  +E+  +A++L + I  H   F    SL+L A+++    E+ +
Sbjct: 932  LPVEYSQFALFIPCLIHSIENYFIANELAQTI-LHPVGFS-NLSLVLTAISSSAAREASN 989

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +RLE LGDS+LK   S  L   +P   EG+L+ R+   V N  L        L  +I  
Sbjct: 990  YQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKGNIVSNGYLANAALQTGLDKFILT 1049

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
              F   +W        RP      ++T ++       T+ T            R M +K 
Sbjct: 1050 KPFTGAKW--------RPSYNTDHINTGDM-------TEPT------------REMSTKV 1082

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDC--ITRASLRSYVPRINE- 1253
            +AD  EALIGA  + GG    L  +K      D++ S +++C  I      S+    N  
Sbjct: 1083 LADVVEALIGAANIDGGENKILNCLKIFI--PDIKWSPLNECVNILHHQEDSFSDENNNM 1140

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHASVQ-EFYCYQNL 1289
            + +IE  +GY F  K LL  A+TH S +   + YQ L
Sbjct: 1141 LSEIEGLVGYTFKKKPLLLAAVTHPSSKGSGHSYQRL 1177


>gi|255933596|ref|XP_002558177.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582796|emb|CAP80997.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1393

 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 184/703 (26%), Positives = 312/703 (44%), Gaps = 97/703 (13%)

Query: 32  VDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAV-------------- 77
           +D    S+N   +  R YQL++ E +++ N I  ++TG+GKT + V              
Sbjct: 1   MDSTGLSSNGAAYRSRGYQLEMLEASRKENIIVAMDTGSGKTHMHVSSFTFCRHVFLTVF 60

Query: 78  --MLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWD 134
              +++ I +   S+   KLI FLAPTV L  QQ++VI       + +   G   VD W 
Sbjct: 61  FSAILRIIDELENSDSPDKLIWFLAPTVALSLQQHEVITSQILSVKTKILTGLDNVDRWT 120

Query: 135 SQ-CWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193
            Q  W K +    V+V T  +L DAL   F+ +  +  +V DE HH T  HP  KIM+  
Sbjct: 121 DQGIWDKVLKDIRVVVSTYAVLADALGHGFVRMSRLALLVFDEAHHCTKRHPANKIMQNH 180

Query: 194 YHKS------DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEM 246
           YH +      +  P++ G+TASPVVR         + ++  +ES L++   T    +TE+
Sbjct: 181 YHPTLLRSGPNAVPRILGLTASPVVRSS-------QNELETIESNLNAICKTPRVHRTEL 233

Query: 247 --EVFVPSAKESCRF-YDQSKF-CGSDLKGKLEVSWSKF----DASLSKLQGSQ--LNCY 296
                 P  +      +D++ +  GS L   L      +    D  +  L+     +   
Sbjct: 234 LENTHRPHLERVNYISFDEAHYGSGSRLLLPLIECCRAYNIEDDPWVESLRSKDHTVELT 293

Query: 297 KDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKA-QEECEIYRQSSL 355
           K +        +QL ++ A+  +  +ELG       +   ++++ ++ Q+  E+     +
Sbjct: 294 KALTTGKTFCSEQLRNFQARSCHIYEELGGWAVDFFISASIDQLQRSMQDASEMSHLDQM 353

Query: 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQV 415
           +  Y LE +L     A+P               A +  ++S KL  LL  FL        
Sbjct: 354 ERIYLLELLL-----AMPAP-----------VSAEESNHVSVKLEMLLN-FLEKMDRPGF 396

Query: 416 LCIIFVERIIAAKVVERFVKKVPFLTHL--TVAYLTGSTTSV------DALTPKVQKEVL 467
             ++F ++     V+ R +   P         AY+  S+         D L   +Q++ L
Sbjct: 397 SGLLFAKQRATVSVLARILSIHPKTRDRFQCAAYVGWSSDRNRKGCLGDLLHRDMQRDTL 456

Query: 468 ESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML- 526
           + F+ G+ NL+  TDV+EEG+ V  CS VI +D P  + S++Q RGRAR   S + LM+ 
Sbjct: 457 DEFKVGRKNLIVTTDVLEEGIDVSACSLVICYDKPANLKSFVQRRGRARHRESTYALMIS 516

Query: 527 ---ERGNLKQRNKLFDII--------RSERSVTDTALSRDPEACFLKACTYVKTKSYIVE 575
              E  NL +  +L   +        R  R V D   + +          +VK + + VE
Sbjct: 517 NEDELLNLHKWQELEQAMIKAYQDDERRRREVYDLEATEE----------HVKERLW-VE 565

Query: 576 STGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYEC-ELTLPSNAPFQTIV 634
            T A +T D ++  ++ +C +LP D+Y    P+F ++          +TLP N+   T+ 
Sbjct: 566 KTSALLTADDALQHLYHFCAVLPVDEYSNNLPLFSFQENSVGLLLGTVTLP-NSVHPTVR 624

Query: 635 GPTS----RNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEP 673
             T     R +  +++    +A + LH  G +ND+LLP   +P
Sbjct: 625 RTTGKAWWRTERAARKETAFQAYKALHAYGLVNDNLLPLTRKP 667



 Score = 80.5 bits (197), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 129/297 (43%), Gaps = 39/297 (13%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPS-SLILEALTTLGCCESFSMERLELLGD 1085
             + +++ RLE+ ++A +L + I    +   I   + ++ A++      S + +R E  GD
Sbjct: 913  FISAILDRLEASLVAHRLNDTI---LKGVGIKDIAHVITAISAPIAQASTNYQRYEFFGD 969

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV 1145
            SVLK+ VSC LF      HEG LS  R   + NS L +   D  +  ++  S F PR+W 
Sbjct: 970  SVLKFTVSCQLFFRNGNWHEGYLSESRDKLIQNSRLARAALDLGIDSFVLTSRFTPRKWT 1029

Query: 1146 APGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALI 1205
             P    +R        + LE P   K                  R + +K +AD  E+LI
Sbjct: 1030 TP---LIR--------NKLE-PSTAK------------------RNISTKVLADVVESLI 1059

Query: 1206 GAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEF 1265
            GA YV GG+  A   +     + +L  + +   I     +     IN  + +   IGY F
Sbjct: 1060 GAAYVDGGIREAQACLHRFLPEINLFTNDISPLILPQG-KGVSNLINHHR-LAGLIGYTF 1117

Query: 1266 TVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGP 1322
                LL EA+THAS  E+      Y+ L+     +L  +   V +   P E  D GP
Sbjct: 1118 NDPALLTEALTHASC-EYDTSTQSYQRLEFLGDAVLDMVVMAVIA-GHPVE-MDQGP 1171


>gi|302511053|ref|XP_003017478.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371]
 gi|291181049|gb|EFE36833.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371]
          Length = 1510

 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 182/665 (27%), Positives = 291/665 (43%), Gaps = 102/665 (15%)

Query: 41  SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFKKLII 97
           SI   PR YQL++FE AK +N IAVLETG+GKT+IAV+L+K + +     +S G    I 
Sbjct: 106 SIIHDPREYQLELFEKAKEKNIIAVLETGSGKTLIAVLLLKHVIEQELTDRSLGLPPRIS 165

Query: 98  FLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
           F    +                +++++ GA   D W+ + W+    +N V+V T ++L  
Sbjct: 166 FFLNNIPQ--------------KIDKFCGAMQTDLWNKETWEGHFKRNMVIVCTAEVLHQ 211

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-DNKPKVFGMTASPVVRKGV 216
            L  +F+ +D +  ++ DE HHA   HPY +I+K+FY K  + KPK+FGMTASP     V
Sbjct: 212 CLLHSFIQIDQINLLIFDEAHHAKKEHPYARIIKDFYLKEPERKPKIFGMTASP-----V 266

Query: 217 SSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKF-CGSDLKGKLE 275
            + ++  G    LE+ LDSQ+ T  +   +   V    E    YD+ +    + L  KL 
Sbjct: 267 DAKVEVVGAAKTLEAMLDSQITTASNPALLRQSVTRPTEEIWEYDRLELPFETPLYSKLR 326

Query: 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKI 335
             +      L K+       +K   +   +L    SD+     YCL E  L         
Sbjct: 327 QKFGDIKV-LEKI-------FKFSRETSSSLGSWCSDWIWS--YCLSEETLPKLEARSNR 376

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L K +  Q  C+   +   +    ++E  H  G   P+A+   L      S+ V L   
Sbjct: 377 PLMKSIPDQSSCDTEAERIREAGAIIKE--HEFGD--PVANPELL------SRKVLLLRD 426

Query: 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
                        F ++    CI+F  +   A+++    KK+    ++    L G  +  
Sbjct: 427 QLL--------RRFKENPDTRCIVFTAQRHTARILRDLFKKIG-SQYIRPNLLVGVRSGG 477

Query: 456 DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMH-VP--NCSYVIRFDLPKTVSSYIQSR 512
           D +   +      SFR   +N++    V E   + +P     + +RFDL  T+  YIQSR
Sbjct: 478 DKIGLDI------SFREQFLNVIAFRKVNESNEYLIPGLGTDFNLRFDLYSTLIQYIQSR 531

Query: 513 GRARQHNS------------------QFILMLERGNLKQRNKLFDIIRSERSVTDTALSR 554
           GRAR   S                  QF  M+ER NL            E +V +  L+R
Sbjct: 532 GRARHMESTVCITYLEVSLVQTNIFTQFAHMVERNNLMH----------ETAVEEEVLTR 581

Query: 555 D----PEACFLKACTYV--------KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKY 602
                PE   LK    +        + KSY ++STGA +T  SS+ ++  Y   L  +K 
Sbjct: 582 FCKSLPEDRLLKGTGDIDMMIEKDRQQKSYTIKSTGAKLTYPSSLAVLAHYASTLQYEKE 641

Query: 603 YTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGAL 662
            + +  +     + A+ CE  LP  +P +  +G ++  K L+KQ    E C  L +   L
Sbjct: 642 LSTQVSYIIHPKDGAFICETILPEKSPIRGCMGKSASRKLLAKQSAAFETCLLLRKNRLL 701

Query: 663 NDHLL 667
           +++ +
Sbjct: 702 DEYFI 706



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 160/448 (35%), Gaps = 114/448 (25%)

Query: 997  NTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFH 1056
            N K P +  ++  E L    + + +   +++ P+++ R+ES ++A +      C      
Sbjct: 974  NQKSPPVDYYVCAEALKISAISVPLATQIFVFPAMIWRMESYLIALEA-----CEKLQLK 1028

Query: 1057 IPSSLILEALTTLG-CCESFSME-------------RLELLGDSVLKYAVSCHLFLTYPK 1102
            IP  L LEALT      E   ME             RLE LGD  LK A S  LF   P 
Sbjct: 1029 IPPELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPD 1088

Query: 1103 KHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVD 1162
              E     +R   +CN  L       ++  +IR  +F  R W   G   L+      G D
Sbjct: 1089 NDEYDYHVKRMLLICNQNLFNNAIILEIFKFIRSRSFSRRAWYPEGLTLLK------GKD 1142

Query: 1163 TLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL-----IAA 1217
              E P                  +     +  KTIAD  EALIGA  + GG      +A 
Sbjct: 1143 KKEGP------------------NGPEHALADKTIADVCEALIGASLLAGGPDHKFDMAT 1184

Query: 1218 LYMMKWLGIDADLEVSLVDDCITRASLRSY------VPRINEIKDIESKIGYEFTVKFLL 1271
              +  ++  D D  V    D     SL +Y         I+    I+SK+GY F    LL
Sbjct: 1185 KAVTVFVNSD-DHRVEKWADYSRLYSLPNYQTASASASEIDVANQIQSKLGYCFKYPKLL 1243

Query: 1272 QEAITHASVQEFY----CYQ---------------------------------------- 1287
            + A  H S    +    CYQ                                        
Sbjct: 1244 RSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSN 1303

Query: 1288 ----------NLYKHLQHCSTLLLSQITEYVKSFPK-----PGETTDSGPSMKAPKALGD 1332
                      NL+ HL H S  L  QIT Y +          G       + + PK L D
Sbjct: 1304 KFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEGNLEAWTYTNEPPKCLPD 1363

Query: 1333 LLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
            ++E+ +GA+ +D+  N D V   F+  +
Sbjct: 1364 IVEAYLGAIFVDSNFNFDVVDDFFRKFI 1391


>gi|302662009|ref|XP_003022664.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517]
 gi|291186623|gb|EFE42046.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517]
          Length = 1510

 Score =  188 bits (478), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 182/665 (27%), Positives = 291/665 (43%), Gaps = 102/665 (15%)

Query: 41  SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFKKLII 97
           SI   PR YQL++FE AK +N IAVLETG+GKT+IAV+L+K + +     +S G    I 
Sbjct: 106 SIIHDPREYQLELFEKAKEKNIIAVLETGSGKTLIAVLLLKHVIEQELTDRSLGLPPRIS 165

Query: 98  FLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
           F    +                +++++ GA   D W+ + W+    +N V+V T ++L  
Sbjct: 166 FFLNNIPQ--------------KIDKFCGAMQTDLWNKETWEGHFKRNMVIVCTAEVLHQ 211

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-DNKPKVFGMTASPVVRKGV 216
            L  +F+ +D +  ++ DE HHA   HPY +I+K+FY K  + KPK+FGMTASP     V
Sbjct: 212 CLLHSFIQIDQINLLIFDEAHHAKKEHPYARIIKDFYLKEPERKPKIFGMTASP-----V 266

Query: 217 SSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKF-CGSDLKGKLE 275
            + ++  G    LE+ LDSQ+ T  +   +   V    E    YD+ +    + L  KL 
Sbjct: 267 DAKVEVVGAAKTLEAMLDSQITTASNPALLRQSVTRPTEEIWEYDRLELPFETPLYSKLR 326

Query: 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKI 335
             +      L K+       +K   +   +L    SD+     YCL E  L         
Sbjct: 327 QKFGDIKV-LEKI-------FKFSRETSSSLGSWCSDWIWS--YCLSEETLPKLEARSNR 376

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L K +  Q  C+   +   +    ++E  H  G   P+A+   L      S+ V L   
Sbjct: 377 PLMKSIPDQSSCDTEAERIREAGAIIKE--HEFGD--PVANPELL------SRKVLLLRD 426

Query: 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
                        F ++    CI+F  +   A+++    KK+    ++    L G  +  
Sbjct: 427 QLL--------RRFKENPDTRCIVFTAQRHTARILRDLFKKIG-SQYIRPNLLVGVRSGG 477

Query: 456 DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMH-VP--NCSYVIRFDLPKTVSSYIQSR 512
           D +   +      SFR   +N++    V E   + +P     + +RFDL  T+  YIQSR
Sbjct: 478 DKIGLDI------SFREQFLNVIAFRKVNESNEYLIPGLGTDFNLRFDLYSTLIQYIQSR 531

Query: 513 GRARQHNS------------------QFILMLERGNLKQRNKLFDIIRSERSVTDTALSR 554
           GRAR   S                  QF  M+ER NL            E +V +  L+R
Sbjct: 532 GRARHMESTVCITYLEVSLVQTNIFTQFAHMVERNNLMH----------ETAVEEEVLTR 581

Query: 555 D----PEACFLKACTYV--------KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKY 602
                PE   LK    +        + KSY ++STGA +T  SS+ ++  Y   L  +K 
Sbjct: 582 FCKSLPEDRLLKGTGDIDMMIEKDRQQKSYTIKSTGAKLTYPSSLAVLAHYASTLQYEKE 641

Query: 603 YTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGAL 662
            + +  +     + A+ CE  LP  +P +  +G ++  K L+KQ    E C  L +   L
Sbjct: 642 LSTQVSYIIHPKDGAFICETILPEKSPIRGCMGKSASRKLLAKQSAAFETCLLLRKNRLL 701

Query: 663 NDHLL 667
           +++ +
Sbjct: 702 DEYFI 706



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 160/448 (35%), Gaps = 114/448 (25%)

Query: 997  NTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFH 1056
            N K P +  ++  E L    + + +   +++ P+++ R+ES ++A +      C      
Sbjct: 974  NQKSPPVDYYVCAEALKISAISVPLATQIFVFPAMIWRMESYLIALEA-----CEKLQLK 1028

Query: 1057 IPSSLILEALTTLG-CCESFSME-------------RLELLGDSVLKYAVSCHLFLTYPK 1102
            IP  L LEALT      E   ME             RLE LGD  LK A S  LF   P 
Sbjct: 1029 IPPELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPD 1088

Query: 1103 KHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVD 1162
              E     +R   +CN  L       ++  +IR  +F  R W   G   L+      G D
Sbjct: 1089 NDEYDYHVKRMLLICNQNLFNNAIILEIFKFIRSRSFSRRAWYPEGLTLLK------GKD 1142

Query: 1163 TLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL-----IAA 1217
              E P                  +     +  KTIAD  EALIGA  + GG      +A 
Sbjct: 1143 KKEGP------------------NGPEHALADKTIADVCEALIGASLLAGGPDHKFDMAT 1184

Query: 1218 LYMMKWLGIDADLEVSLVDDCITRASLRSY------VPRINEIKDIESKIGYEFTVKFLL 1271
              +  ++  D D  V    D     SL +Y         I+    I+SK+GY F    LL
Sbjct: 1185 KAVTVFVNSD-DHRVEKWADYSRLYSLPNYQTASASASEIDVANQIQSKLGYCFKYPKLL 1243

Query: 1272 QEAITHASVQEFY----CYQ---------------------------------------- 1287
            + A  H S    +    CYQ                                        
Sbjct: 1244 RSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSN 1303

Query: 1288 ----------NLYKHLQHCSTLLLSQITEYVKSFPK-----PGETTDSGPSMKAPKALGD 1332
                      NL+ HL H S  L  QIT Y +          G       + + PK L D
Sbjct: 1304 KFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEGNLEAWTYTNEPPKCLPD 1363

Query: 1333 LLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
            ++E+ +GA+ +D+  N D V   F+  +
Sbjct: 1364 IVEAYLGAIFVDSNFNFDVVDDFFRKFI 1391


>gi|315051166|ref|XP_003174957.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893]
 gi|311340272|gb|EFQ99474.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893]
          Length = 1425

 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 176/666 (26%), Positives = 315/666 (47%), Gaps = 79/666 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ+++ + + ++N I  ++TG+GKT IA++ I+     ++     KL+ FLAP V L 
Sbjct: 47  RTYQIEMLKESLKQNIIVAMDTGSGKTQIAILRIR---HELERCSNDKLVWFLAPKVPLA 103

Query: 107 HQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRKAFL 164
            QQY  I      F+ +   GA  ++ W +Q  W   +    ++V TPQ+LLDAL   F+
Sbjct: 104 EQQYRAISSQLPAFQTKILTGADNLERWSTQKIWDAFLLNTRIVVSTPQVLLDALSNGFI 163

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYH-------KSDNKPKVFGMTASPVVRKGVS 217
           +L  +  ++ DE HH   + P  +IM+ FYH       ++++ P + G+TASP      +
Sbjct: 164 TLQRIALLIFDEAHHCVKSSPENRIMQNFYHARKDQLSETNDLPYILGLTASP------T 217

Query: 218 SAMDCEGQISELESTLDS--QVFTIEDKTEME-VFVPSAKESCRFYDQSKFCGSDLK--G 272
           S++  E  + +LE  L +  +  TI  +  M+ V +P  ++     D       +LK   
Sbjct: 218 SSL-IENALRQLEQNLHACCKTPTIHREDMMQFVHIPELRKVSYQNDSIIPLNMELKFLS 276

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYH---AKILYCLDELGLICA 329
            L    +K+D    + QG             KT RK L  +    A+   C  +L   C 
Sbjct: 277 MLNDIDTKYDPFFQRYQG-------------KTDRKSLERFSLVAARKTPCFVQLKRCCR 323

Query: 330 YEAVKIC-LEKVLKAQEECEIYRQSSLQCKYFLEEVL--------HVIGSALPLADKIFL 380
             +     L +   +    E+YR++  +    L++            I +AL    +I  
Sbjct: 324 RISHMFGELGQWASSTYISEVYRRAREKETKLLDQNWSEWDRDDTSFICNALKPVVEIMG 383

Query: 381 DFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL 440
           +  ++    V    IS K+  L+ + LS   +     IIFVE+   A ++   +   P L
Sbjct: 384 ERCWNAPPDV----ISEKVEHLVHI-LSSELTGASRGIIFVEQRATAVMLTHLISHHPRL 438

Query: 441 THLTVAYLTGST------TSVDALTPK-VQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           TH+   Y  G++      + +  L+     K+ ++  R GK NLL AT V+EEG+ V  C
Sbjct: 439 THVNSDYFLGNSAFAARKSDITELSKAGDMKDSIDDLRSGKKNLLIATSVLEEGIDVSAC 498

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNL---KQRNKLFDIIR----SERS 546
             V+ FD PK + S++Q RGRAR+ +S+F++     +    K    + DI++    S ++
Sbjct: 499 DLVVCFDPPKQLRSFVQRRGRARKASSKFVIFYAEDDTTTKKDWEAMEDIMKEKYSSNKA 558

Query: 547 VTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYT-P 605
             D+ L         +    V+ +S+ +ESTGA +T +++ + +  +C  LP +   T P
Sbjct: 559 FIDSLLE-------QEDEEEVEYESFRIESTGALLTLENAPSHLSHFCSTLPCEFTDTQP 611

Query: 606 KPIFKYKSAEEAYECELTLPS--NAPFQTIVGPTS-RNKNLSKQLVCLEACEKLHQVGAL 662
             I      ++    ++ LP+  +  F+   G  + + + ++K+    +A  +L++ G +
Sbjct: 612 DFIISKVGIKDLLTAKVLLPTVLDHQFRDFEGIEAWKKEKMAKRDAAFQAYLQLYKAGLV 671

Query: 663 NDHLLP 668
           NDHL+P
Sbjct: 672 NDHLMP 677



 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 113/270 (41%), Gaps = 39/270 (14%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+   K    +PS++  +   +LA  L   I   S  F     L+L A+T     E+ +
Sbjct: 930  LPMGFTKFALFIPSLIHSIGRFLLAEDLSNTI-LSSIGFK-DIKLVLTAITATSARENTN 987

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +RLE LGDS LK   S  L   +P  HEG LS ++   V NS L K   D  L  +I  
Sbjct: 988  YQRLEFLGDSALKLHASMQLLADHPIWHEGILSKKKDSIVSNSRLWKAAVDTGLDRFILT 1047

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
            + F   +W        RP+                 +    +  VG       R + +KT
Sbjct: 1048 TCFTGAKW--------RPL-----------------YNSTYRHNVGTARREQTRELSTKT 1082

Query: 1197 IADCAEALIGAYYVGGG-------LIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP 1249
            +AD  E+LIGA  V GG       L   L  + WL     +E+ L D   +        P
Sbjct: 1083 LADVVESLIGAAIVDGGENKVLRCLELFLPEINWLPSGERVEI-LYD---SAPDFSDDFP 1138

Query: 1250 RINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
            R + +  IE  I Y FT + LL  +++H S
Sbjct: 1139 R-DILSKIEPLIDYSFTKRALLAASLSHPS 1167


>gi|350639413|gb|EHA27767.1| hypothetical protein ASPNIDRAFT_211065 [Aspergillus niger ATCC
           1015]
          Length = 1372

 Score =  187 bits (475), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 171/662 (25%), Positives = 295/662 (44%), Gaps = 71/662 (10%)

Query: 40  NSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFL 99
           ++  + PR YQ+++FE + + N I             V +++       S    +LI FL
Sbjct: 13  DAPTYRPRSYQVEMFEASLKENII-------------VTVLR------SSYALLQLIWFL 53

Query: 100 APTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLD 157
            PTV L  QQ+  I  +              V+ W  Q  W   + +  V+V T  +L D
Sbjct: 54  TPTVALCLQQFKFISDNIPAVRARTLTSLDKVELWTEQPVWDAILKEMQVVVSTHAVLAD 113

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKVFGMTASPV 211
           A+   F+ +  +  ++ DE HH    HP  KIM++FYH +  +      PK+ G+TASPV
Sbjct: 114 AMSHGFVKITQLGLMIFDEAHHCMRRHPANKIMQDFYHPALERHGAEAVPKILGLTASPV 173

Query: 212 VRKGVSSAMDCEGQISEL---ESTLDSQVFTIEDKTEME--VFVPSAKESCRFYDQSKFC 266
           VR      +  E  +  +     T  S++ T   +  ++  +F P   +  +        
Sbjct: 174 VRSNRQELLKIESNLDAVCKTPRTHRSELMTHTHRPHLQQILFTPVLLDDLQ-------V 226

Query: 267 GSDLKGKLEVSWSKF----DASLSKLQGSQLN---CYKDMDDKHKTLRKQLSDYHAKILY 319
           GS     L  +W+      D  + KL+ S L+     K ++        QL  +  + L+
Sbjct: 227 GSKTLKALVSAWTSLRLEDDPYIKKLRKSPLDGRALQKVLESGKTYCNDQLKRFATRSLH 286

Query: 320 CLDELGLICAYEAVKICLEKV-LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKI 378
             +ELG   A   +   +E++  +A    +    +  +  Y L+     I S LP+ +  
Sbjct: 287 IFEELGEWAADYFIHASIEQLKARAGNSADTMGWTDEEKAYLLD-----IVSKLPIPN-- 339

Query: 379 FLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438
                  +S   D   IS+K   LL+ FL          +IF ++     V+E+ +   P
Sbjct: 340 ---IDLTHSDP-DRIPISSKFRSLLE-FLDTKGEPNFSGLIFAKQRATVSVMEKLLSIHP 394

Query: 439 FLTHLT-----VAYLTGSTTSV--DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
              H       V +  G +  V  + L  ++Q++ L  FR G+ NL+ ATDV+EEG+ + 
Sbjct: 395 VTKHRFRCASFVGWSGGGSKDVLGELLDARMQRDTLSEFRTGQKNLIIATDVLEEGIDIS 454

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR-NKLFDIIRSERSVTDT 550
            CS V+ FD P  + S++Q RGRAR   S + +M    +     +K  D+ ++     + 
Sbjct: 455 ACSVVVCFDKPPNLKSFVQRRGRARHRQSTYAIMFATDDESSALSKWEDLEQAMIEAYED 514

Query: 551 ALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK 610
              R  EA  L+A      +   V+STGA +T D++V  ++ +C +LP   Y + +P F 
Sbjct: 515 DERRLREAWALEAINEEVVERLEVQSTGAVLTADTAVAHLNHFCAVLPRQPYASNEPEFS 574

Query: 611 Y-KSAEEAYECELTLPS--NAPFQTIVGPT-SRNKNLSKQLVCLEACEKLHQVGALNDHL 666
           Y K   +     +TLPS  +   + I G    + +  +++    +A ++L++ G L+DHL
Sbjct: 575 YEKDDADLLRGTVTLPSCVHPGVRRIQGQRWWQTERAARKEAAFQAYKRLYEFGLLSDHL 634

Query: 667 LP 668
           LP
Sbjct: 635 LP 636



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 120/274 (43%), Gaps = 55/274 (20%)

Query: 1031 VMQRLESLMLASQLREEINCHSRNFHIPS-SLILEALTTLGCCESFSMERLELLGDSVLK 1089
            ++ RLE+ ++A++L E I    R+    S   I+ A+T        + +R E  GDSVLK
Sbjct: 890  ILDRLEATLVATRLCETI---LRDLEFSSIRHIITAITAPSAQSLTNYQRYEFFGDSVLK 946

Query: 1090 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAP-- 1147
            + VSC LF  +P  HEG LS  R   V NS L +   D  L  +I +  F PR+W AP  
Sbjct: 947  FTVSCQLFFQHPNWHEGYLSEGRDEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLI 1006

Query: 1148 -GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
              ++SL P                                   R M +K +AD  EALIG
Sbjct: 1007 SEKISLTP---------------------------------KQRTMSTKVLADVVEALIG 1033

Query: 1207 AYYVGGGLIAALYMMKWLGIDADLE------VSLVDDCITRASLRSYVPRINEIKDIESK 1260
            A Y+ GG  AA   +     + +LE        +  D +T  +L            + + 
Sbjct: 1034 ASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVTNHTLND--------DHLMAH 1085

Query: 1261 IGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQ 1294
            IGY FT K LL E++TH S Q F      Y+ L+
Sbjct: 1086 IGYTFTNKSLLVESLTHPSCQ-FDTTTQSYQRLE 1118


>gi|158705946|sp|Q0UL22.2|DCL2_PHANO RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease DCL2; Includes: RecName:
           Full=ATP-dependent helicase DCL2
          Length = 1399

 Score =  187 bits (474), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 165/676 (24%), Positives = 314/676 (46%), Gaps = 73/676 (10%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F  R YQ ++ E + + N I V++TG+GKT IA+   +   +  + +   K++ FLAPTV
Sbjct: 9   FRLRSYQAEMVEESMQSNIICVMDTGSGKTHIAIDRTRAELEICRPD---KIVWFLAPTV 65

Query: 104 HLVHQQYDVIRVH-TDFEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVMTPQILLDALRK 161
            L  QQ+ V + +   + ++   G   +D W D   W   +    +++ T Q+LLDAL  
Sbjct: 66  TLCEQQFAVFKSNLPGYGIQLLSGKDNLDHWTDQGVWDDVLLNIRIVLSTHQVLLDALSH 125

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK--SDNKPKVFGMTASPVVRKGVSSA 219
            F+ +  +  ++ DE HH +  HP  +IM +FY        P++ G++ASP+    V+S 
Sbjct: 126 GFVKMRNLSLLIFDEAHHCSLKHPAHRIMSDFYKPRIGTELPRILGLSASPIKTAKVTSE 185

Query: 220 MDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAK-ESCRFYDQSKFCGSDLKGKLEVS 277
                 + ++E  L + V T +  ++E+  +V         +  + +   S++   L+ +
Sbjct: 186 -----DLQQIERNLCATVKTPKLHRSELLRYVHRPHLMRIDYPVEPQDLQSNMLSFLKSA 240

Query: 278 WSKFDAS----LSKLQGSQLNCYKDMDDKHKTL-------RKQLSDYHAKILYCLDELGL 326
           ++ +D      +S+L   +   +    + HK         R QL     K      ELG+
Sbjct: 241 YTNYDLQKDPWVSELLQQRQQGHDVTKNIHKVFIGGKTYCRDQLRSLALKAEAMSQELGM 300

Query: 327 ICAYEAVKICLEKVLKA--QEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF 384
                 ++ C+ +  K     + ++   S+ + ++ LE +L  + S         +D   
Sbjct: 301 SVMDWYLRGCITQFSKMVHMSDSQLLDWSADEKRHLLE-ILRTLPS---------IDLNS 350

Query: 385 DYSKAVDLGYISTKLHELLQLFLSFGK-STQVLCIIFVE-RIIAAKVVERFVKKVPFLTH 442
                + LG +S KL  L++  ++  K   +  C++FVE R+  A + E           
Sbjct: 351 HDIPPMSLGSMSHKLQLLIKFLVAEAKHDPEFTCLVFVEQRVWVACIAEVLAIHPETRDL 410

Query: 443 LTVAYLTGST------TSVDALT-PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSY 495
           L V    G +       ++ +++ P+ Q+  LE+FR GK+NL+ AT V+EEG+ V +C  
Sbjct: 411 LRVGTFVGESENSKRKANIASISEPRNQQATLENFRAGKLNLILATSVLEEGIDVSSCHL 470

Query: 496 VIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRD 555
           V+ F+ PK + S++Q RGRAR+  S++++ + +   ++  + +            +L   
Sbjct: 471 VVCFESPKNLKSFVQRRGRARKEESKYVIFVPQAGRRRDPESWQ-----------SLEEG 519

Query: 556 PEACFLKACTYVKT------------KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYY 603
            +A +L     VK             +++ V+STGA +T D++   +H +C +L +  Y 
Sbjct: 520 MKAAYLDDLRQVKLATEKEQQSETGHRNFEVKSTGALLTLDNASQHLHHFCSILGAGPYI 579

Query: 604 TPKPIFKYKSAEEAY---ECELTLPSNAPFQTIVG-PTSRNKNLSKQLVCLEACEKLHQV 659
             +P F++             L L  +   +T     T   + ++KQ    EA + L+  
Sbjct: 580 DNRPQFEFTEIRPGVITARVILPLTVDPEVRTACALDTWATEKMAKQDAAFEAYKALYVA 639

Query: 660 GALNDHLLPSVEEPSE 675
           G +ND+LLP+ +E  +
Sbjct: 640 GLVNDNLLPARQEADD 655



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 111/266 (41%), Gaps = 33/266 (12%)

Query: 1015 VDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCES 1074
            V  P SV     LLPS++ R    ++A  LR  +          S L+  AL +     +
Sbjct: 886  VPAPYSVFA--LLLPSILHRFGMAIIAETLRTTLLGPVALDSAHSLLLTRALKSSAADGN 943

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
             + +RLE LGD +LK+  + HL    PK  E  L+A++   V N  L +      L  ++
Sbjct: 944  DNYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSNGFLARATIAAGLDRFM 1003

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
               +F   +W AP                         +  D     G P     R   S
Sbjct: 1004 ITKSFTGAKW-APR------------------------YAGDLLAETG-PAVKEER--SS 1035

Query: 1195 KTIADCAEALIGA-YYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1253
            K IAD  E+LIGA Y VGG   A L +   L ++  + V   +  +  A+       +  
Sbjct: 1036 KLIADIIESLIGACYTVGGFEKAVLCVQTLLPLEPWISVPAANSILHEAA--PAEADLMG 1093

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHAS 1279
            +  +E+ IGY F  K LL EA+THAS
Sbjct: 1094 LDVLETLIGYTFKKKPLLLEALTHAS 1119


>gi|327349134|gb|EGE77991.1| dicer [Ajellomyces dermatitidis ATCC 18188]
          Length = 1482

 Score =  185 bits (470), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 178/691 (25%), Positives = 314/691 (45%), Gaps = 101/691 (14%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F PR YQL++ E + R N I  ++TG+GKT +A++ I+     +++    KL+ FLAPTV
Sbjct: 45  FKPRAYQLEMLEASLRENIIIAMDTGSGKTQVAILRIR---HELETCAAHKLVWFLAPTV 101

Query: 104 HLVHQQYDVIRVH-TDFEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRK 161
            L  QQ+  I    + ++     G+  V+ W ++  W   +    ++V TPQ+LLDA+  
Sbjct: 102 ALADQQHKSISQQLSAYQTRLLLGSDNVNYWSTKNIWDDILLNIRIVVSTPQVLLDAMTH 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-------SDNKPKVFGMTASPVVRK 214
            F+++  +  +V DE HH   N     +M+ FYH+       +++ P + G+TASP+ + 
Sbjct: 162 GFMTMSRIALLVFDEAHHCAENEAPNILMQRFYHEQLQRTGTANDLPHILGLTASPITKV 221

Query: 215 GVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
                M       ++E  L+S+  T     E         E  R+  + + C  + +  +
Sbjct: 222 DPKYLM-------KIEHNLNSRCETPRIHRE---------ELMRYVHRPELCTVNFQVDV 265

Query: 275 EVSWSKFDASLSKL-------QGSQLNCYKDMDD------------KHKT--------LR 307
            V  S    SL ++       Q   +   K   D            K KT        LR
Sbjct: 266 SVG-SDILQSLHRIVETVDIEQDPWIKRLKQQKDRRSQNTLLNAMVKRKTFAISQMTKLR 324

Query: 308 KQLSDYHAKILYCLDELGLICAYEAVKICLEKV--LKAQEECEIYRQSSLQCKYFLEEVL 365
           +Q ++ H       + LG   A   +   L+++   +A++  +       + + F+ E L
Sbjct: 325 RQATNIH-------ENLGAWAADAFISEVLKRLGAKRAKQSADHLGTLEREQENFVFETL 377

Query: 366 HVIGSALPL-ADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI 424
               S LP+   K + D   D         +S+K + L+ L L    ++    IIF ++ 
Sbjct: 378 ----SQLPIYPSKQYWDSEPD--------LVSSKANLLIDL-LEKEHTSDFTGIIFAQQR 424

Query: 425 IAAKVVERFVKKVPFLTHLTV--------AYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
               ++   + K P L  L V         Y   ++T  +    K Q+  ++  R GK N
Sbjct: 425 STVTMLAHLISKHPRLKDLIVPGAFLGDAGYADRTSTITELHNTKTQRGSIDDLRSGKKN 484

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML---ERGNLKQ 533
           LL AT V+EEG+ V  C  V+ FD    + S+IQ RGRAR+  S+F++ L   ++   K+
Sbjct: 485 LLVATSVLEEGIDVSACHLVVCFDAISNLRSFIQRRGRARKERSKFVIFLNGDDKSQEKK 544

Query: 534 RNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYI-VESTGASVTTDSSVNLIHR 592
            NK+ D+++S        L        ++     K   Y+ +E TGA +T +++   +  
Sbjct: 545 WNKMEDVMKSMYEEDMRRLENIWAIENIEEEADEKENEYLRIEPTGALLTFENARPHLEH 604

Query: 593 YCEMLPSDKYYTPKPIFKYKSAEEA--YECELTLPS--NAPFQTIVGPT-SRNKNLSKQL 647
           +C  L  D +   +P+F Y  +E       ++ LP+  +  F+ I G    R + ++++ 
Sbjct: 605 FCATLQCD-FTDTRPVFLYSESEPGGMVTGKVILPNVLDPKFRVIRGSKWWRRERMAQRD 663

Query: 648 VCLEACEKLHQVGALNDHLLP----SVEEPS 674
              +A  KL++ G +ND+LLP     VE+P+
Sbjct: 664 AAFQAYVKLYREGLVNDNLLPIHWMPVEDPA 694



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 113/266 (42%), Gaps = 53/266 (19%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDS 1086
            L PS+M ++E  ++A QL + I      F    SL++ A++     E+ + +R+E LGDS
Sbjct: 951  LTPSIMHKVEIYLIAEQLNKTI-LKPVAF-TDLSLVVTAISASVAREATNYQRIEFLGDS 1008

Query: 1087 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVA 1146
            +LK+  +  L       HEG LS  +   V N  L     +  L  +I    F   +W  
Sbjct: 1009 ILKFHTTLQLSAANLVWHEGLLSRAKDNVVSNKRLSYAAVETGLDKFILVDVFTGAKW-- 1066

Query: 1147 PGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
                  RP   +  +++ E                G P     R M +KT+AD  EAL+G
Sbjct: 1067 ------RPRYNKVHLESEE---------------QGIP----QREMTTKTLADVVEALLG 1101

Query: 1207 AYYVGGG-------LIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP------RINE 1253
            A  + GG       L   L  ++W+  D  +            +L + VP      R + 
Sbjct: 1102 AATIEGGETKTEKCLEIFLPEIRWMPFDDRIN-----------ALYNSVPEAYENIRTSW 1150

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHAS 1279
             ++IES +GY F  K  L +A TH S
Sbjct: 1151 FQEIESLLGYSFNKKVFLVQAFTHPS 1176


>gi|223945933|gb|ACN27050.1| unknown [Zea mays]
          Length = 293

 Score =  184 bits (466), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/284 (44%), Positives = 169/284 (59%), Gaps = 14/284 (4%)

Query: 1320 SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIE 1379
            SGP  + PK LGD++ESI GA+LID+KL+LD VWR+FKP+LSPIVTP+ LELP  REL E
Sbjct: 9    SGPC-RGPKVLGDIVESIAGAILIDSKLDLDLVWRVFKPLLSPIVTPENLELPRFRELNE 67

Query: 1380 LCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVC 1439
              D  GYF+   C  +G+   A L LQLKD+LLV +G  +++  AK  AAS LL+ LE  
Sbjct: 68   WSDKNGYFIGIKCENRGDSTMAILNLQLKDLLLVRQGCGKNKVDAKAHAASLLLRDLEEK 127

Query: 1440 EKRISKGASNTGKLGDDCRQTTKE-----DLPEPPSCKRQKGTEAAIPAGDSCKKAYCMT 1494
               I + AS   +L  +   T K      D+ +  +    +  E A+ +  +        
Sbjct: 128  GLIIPRNASRVEQLEKNS-GTVKHCNNVLDVMDTQNVAPPRQKEVAVLSTTTPGS----V 182

Query: 1495 VGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRT--GFS 1552
            +  P+V  + + KGGPR SL++ CK + WPMPTFE  + +       C   +K    GF 
Sbjct: 183  LDKPLVVKVKLSKGGPRISLYESCKKLQWPMPTFEFVKVEPSVCSSSCGSSQKVAPQGF- 241

Query: 1553 SFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQ 1596
            +F S ITLHIP    +   GD RADKKSS DSAAL+ML+EL+RQ
Sbjct: 242  AFASTITLHIPNGDVISLTGDGRADKKSSQDSAALLMLYELQRQ 285


>gi|222625280|gb|EEE59412.1| hypothetical protein OsJ_11562 [Oryza sativa Japonica Group]
          Length = 422

 Score =  184 bits (466), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 91/202 (45%), Positives = 129/202 (63%), Gaps = 7/202 (3%)

Query: 45  IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           + R YQL+  E A R NT+A LETG+GKT+IAVML++  A  ++    ++  +FL PTV 
Sbjct: 33  MARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVV 92

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           LV QQ  V+  HTD  V+++ G  GVD WD+  W+ ++   +VLVMTPQILLD LR +F 
Sbjct: 93  LVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFF 152

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYH------KSDNKPKVFGMTASPVVRKGVSS 218
            L  +  ++ DECHHA GN PY  I KEFYH       SD  P++FGM+AS +  K ++ 
Sbjct: 153 RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKDLNQ 212

Query: 219 AMDCEGQISELESTLDSQVFTI 240
             +   QISE+E+ ++S+ F +
Sbjct: 213 H-NYSKQISEIENLMNSKCFLL 233



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 597 LPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKL 656
           L  D YY  +    +   + +  C L LP ++P QT+        ++ K+ VCL+AC++L
Sbjct: 290 LCEDTYYRVESTPAFDIDKASGTCTLHLPKSSPVQTV--NVEGEGSILKETVCLKACQEL 347

Query: 657 HQVGALNDHLLPSVEEPSE 675
           H +GAL D LLP ++ P +
Sbjct: 348 HAIGALTDSLLPELDVPCD 366


>gi|326475978|gb|EGD99987.1| hypothetical protein TESG_07315 [Trichophyton tonsurans CBS 112818]
          Length = 1435

 Score =  183 bits (464), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 175/676 (25%), Positives = 296/676 (43%), Gaps = 99/676 (14%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ+++ + + ++N I  ++TG+GKT IA++ I+     ++     KL+ FLAP V L 
Sbjct: 58  RGYQIEMLDASIKQNIIVAMDTGSGKTQIAILRIR---HELERCSNDKLVWFLAPKVPLA 114

Query: 107 HQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRKAFL 164
            QQY  I      ++ +   GA  ++ W +Q  W   +    ++V TPQILLD L   F+
Sbjct: 115 EQQYRAISQQLPAYQTKILTGADNLERWSTQKIWDAFLLNTRIVVSTPQILLDVLSNGFI 174

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYH-------KSDNKPKVFGMTASPVVRKGVS 217
           +L  +  +V DE HH     P  KIMK FYH       ++++ P + G+TASP  +    
Sbjct: 175 TLRRIALLVFDEAHHCVKASPENKIMKNFYHARIDQLSETNDLPSILGLTASPTSKL--- 231

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
                E  + +LE  L +   T           PS      F+ +       +   L++S
Sbjct: 232 ----TEDSLRQLEQNLHACCKT-----------PS------FHHEEMMQYVHIPELLKIS 270

Query: 278 WSKFDASLSKLQGSQLNCYKDMDD---------KHKTLRKQLSDY---HAKILYCLDELG 325
           + K       ++   L+   D+D          K KT RK +  +     +   CLD+L 
Sbjct: 271 YQKDSTIPHNMEMKFLSMLNDIDIESDPFFQRYKGKTDRKSIERFMRARDRKTPCLDQL- 329

Query: 326 LICAYEAVKICLEKVLKAQEE----------CEIYRQSSLQCKYFLEEVLHVIGSALPLA 375
                   K C  +V     E           EIYR++  +    +++      S     
Sbjct: 330 --------KRCFTRVSHIYGELGHWASSTFISEIYRRTREKRAKLIDQSW----SEWDRD 377

Query: 376 DKIFLDFGFDYSKAVDLG---------YISTKLHELLQLFLSFGKSTQVLCIIFVERIIA 426
           D  FL        A+ +G          +S K+  L+ L  S    T    IIFVE+   
Sbjct: 378 DSSFLCNALKPVVAI-IGERCWNSTPDAVSQKVEHLVDLLASELTGTS-RGIIFVEQRAT 435

Query: 427 AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALT-------PKVQKEVLESFRGGKVNLLF 479
           A ++   +   P L H+   Y  G++   D          P   K  ++  + GK NLL 
Sbjct: 436 AVMLSHLISHYPELAHIMPDYFLGNSAFSDRKADITELSKPGDMKNSIDDLKSGKKNLLV 495

Query: 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNL---KQRNK 536
           AT V+EEG+ V  C  V+ FD PK + S++Q RGRAR+ +S+F++     +    K    
Sbjct: 496 ATSVLEEGIDVSACDLVVCFDPPKQLRSFVQRRGRARKQSSKFVIFYAEDDTATHKDWEA 555

Query: 537 LFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEM 596
           + DI++         + R            V+ +S  +ESTGA +T +++ + +  +C  
Sbjct: 556 MEDIMKERYFNNKEFIDR---LREEDDEEDVEYESLRIESTGALLTLENARSHLSHFCST 612

Query: 597 LPSDKYYT-PKPIFKYKSAEEAYECELTLPS--NAPFQTIVGPTS-RNKNLSKQLVCLEA 652
           LP +   T P  I      ++    ++ LP+  +  F+   G  + + + ++K+    +A
Sbjct: 613 LPCEFTDTQPDFIISNSGIKDMLTAKVLLPTVLDLQFREFEGIQAWKREKMAKRDAAFQA 672

Query: 653 CEKLHQVGALNDHLLP 668
             +L++ G +NDHL+P
Sbjct: 673 YLQLYKAGLVNDHLMP 688



 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 113/276 (40%), Gaps = 51/276 (18%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+   K    +PS++  +   +LA +L + I       +I   L+L A+T     E  +
Sbjct: 941  LPVGFAKFALFIPSLIHTIGRYLLAEELSQTILSPVGFQNI--QLVLTAITATSAREDTN 998

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +RLE LGDS LK   S  L   +P  HEG LS ++   V NS L K   D  L  +I  
Sbjct: 999  YQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKDSIVSNSRLWKAAVDTGLDQFILT 1058

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
            + F   +W        RP+      D                   GK  +   R + +KT
Sbjct: 1059 TCFTGAKW--------RPLYNSTYADN-----------------AGKIGEKSTRELSTKT 1093

Query: 1197 IADCAEALIGAYYVGGG-------LIAALYMMKWLGIDADLEV------SLVDDCITRAS 1243
            +AD  E+LIGA  + GG       L   L  + W      +E+         DDC     
Sbjct: 1094 LADVVESLIGAAIIDGGENKVLRCLELFLPEINWQPSGERIEILFDSAPDFNDDC----- 1148

Query: 1244 LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
                 PR + +  IE  I Y FT K LL  +++H S
Sbjct: 1149 -----PR-DIMSKIEPLIDYSFTKKALLATSLSHPS 1178


>gi|121714731|ref|XP_001274976.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
 gi|158706439|sp|A1C9M6.1|DCL2_ASPCL RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease dcl2; Includes: RecName:
           Full=ATP-dependent helicase dcl2
 gi|119403130|gb|EAW13550.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
          Length = 1389

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 178/678 (26%), Positives = 301/678 (44%), Gaps = 70/678 (10%)

Query: 37  SSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLI 96
           +++++  +  R YQL++ E + + N I  ++TG+GKT IAV+ IK     + S    K+I
Sbjct: 7   TNSDAAAYQARNYQLEMLEASMKENIIVAMDTGSGKTHIAVLRIK---AELDSCPPDKII 63

Query: 97  IFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQI 154
            FLAPTV L  QQ+ VI  +    +     G   V+ W  Q  W   +    V+V T  +
Sbjct: 64  WFLAPTVALCTQQHKVIASNLPAVQTRTLTGLDKVELWTEQAIWDAILKDVRVVVSTYAV 123

Query: 155 LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKVFGMTA 208
           L DAL   F+ +  +  I+ DE HH    H   KIM++FYH + +K      P++ G+TA
Sbjct: 124 LADALSHGFMRMSRLALIIFDEAHHCMRKHAANKIMQDFYHPTVSKFGPSAVPRIMGLTA 183

Query: 209 SPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCG 267
           SPVVR           ++  +E+ LD+   T    + E+  F    +     Y+     G
Sbjct: 184 SPVVRSN-------REELFTIETNLDAVCKTPRAHRQELLKFSHRPELKQLLYEPPDPMG 236

Query: 268 -----SDLKGKLEVSWSKFDAS----LSKLQGSQLN---CYKDMDDKHKTLRKQLSDYHA 315
                  L+  +E +W   D      + +L+ S L+     K +       R+QL  +  
Sbjct: 237 LQVSSQTLRALIE-AWETLDIEDDPYVKRLRKSSLDGGALEKALMTGKTFCREQLKRFVD 295

Query: 316 KILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLA 375
           +  +  +ELG   A   +   ++ +    +   +        + +L   L    S LP A
Sbjct: 296 RSRHIFEELGEWAADYYIYTSIQHLKTRVQTSYMTGDWDEAERAYLVSFL----SKLPAA 351

Query: 376 DKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435
                D     S A  L  IS KL  L+  FL      +   +IFV++     V+   + 
Sbjct: 352 -----DIQITLSDAACL-RISPKLEALIG-FLDAMDDPEFSGLIFVKQRATVSVMTDLLA 404

Query: 436 KVPFLTH--LTVAYLTGSTTS------VDALTPKVQKEVLESFRGGKVNLLFATDVIEEG 487
             P       + AY+  S +S       + L+   Q   L+ FR G  NL+ ATDV+EEG
Sbjct: 405 VHPRTRERFRSAAYVGWSNSSGSKDFLGNLLSMHGQLSTLDDFRSGHKNLIIATDVLEEG 464

Query: 488 MHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRS---E 544
           + +  CS V+ +D P  + S++Q RGRARQ  S + +M         +  FD+ +    E
Sbjct: 465 IDISACSVVVCYDKPPNLKSFVQRRGRARQKQSTYAIM-----FPAEDSAFDLAKWQTLE 519

Query: 545 RSVTDTALSRDPE-----ACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPS 599
           +++ +    +D E     A  L+       + + VEST A +T D+++  +H +C +LPS
Sbjct: 520 QAMIEA--YQDDERHLQSAIELERVNEEVVERFTVESTSAVLTADTAMAHLHHFCAVLPS 577

Query: 600 DKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTS----RNKNLSKQLVCLEACEK 655
             Y   +P+F  ++        + +  N     +         R +  + +    +A + 
Sbjct: 578 QPYVDMRPVFSVETDIANLRRGIVILPNCVHPKVRRSEGQRWWRTERAAMKEAAFQAYKS 637

Query: 656 LHQVGALNDHLLPSVEEP 673
           L++ G +ND+LLP   +P
Sbjct: 638 LYEFGLVNDNLLPLTNKP 655



 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 125/278 (44%), Gaps = 43/278 (15%)

Query: 1031 VMQRLESLMLASQLREEINCHSRNFHIPSSL-ILEALTTLGCCESFSMERLELLGDSVLK 1089
            V+Q+LE+ ++A++L E I    R+    S+  I+ A++        + +R E LGDS+LK
Sbjct: 910  VVQQLETELIATKLYETI---LRDVGFTSTQHIITAISAPSAQALTNYQRYEFLGDSILK 966

Query: 1090 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQ 1149
            ++VSC LF  +P  HEG LS  R   V N  L K   D  L  ++    F PR+W AP  
Sbjct: 967  FSVSCQLFFKHPNWHEGYLSEGRDEIVQNPRLTKAALDTGLDAFVITKMFTPRKWSAP-- 1024

Query: 1150 LSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYY 1209
                                    ++  + V GK      R + SK +AD  EALIGA Y
Sbjct: 1025 ----------------------LISERLERVAGK------RQVSSKVLADVVEALIGAAY 1056

Query: 1210 VGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPR--INEIKD-IESKIGYEFT 1266
            + GG  AA   ++    + +L         TR   RS  P      I D ++  I Y F 
Sbjct: 1057 MDGGHAAAQACIRRFLPEINLH-----SLDTRTLSRSVAPEGARQTIHDRLKRHISYTFE 1111

Query: 1267 VKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQI 1304
             + LL EA+TH S  ++      Y+ L+     +L  I
Sbjct: 1112 NESLLVEALTHPSC-DYDASTQSYQRLEFLGDAVLDMI 1148


>gi|384500232|gb|EIE90723.1| hypothetical protein RO3G_15434 [Rhizopus delemar RA 99-880]
          Length = 1239

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 173/301 (57%), Gaps = 26/301 (8%)

Query: 391 DLGYISTKLHELLQLFLSFGKSTQVLC-IIFVERIIAAKVVERFVKKVPFLTHLTVAYLT 449
           D+   S K+ +L+QL      +    C IIFVER   A  +++ ++ +  L  +    L 
Sbjct: 48  DIQTFSPKIAKLIQLLGFIVNNMGQFCGIIFVERRHTAIALQKLIESLDTLDKIKCGILI 107

Query: 450 GSTTSVDA---LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
           G  T+ +    +T K Q +V++ FR G++N L AT+V EEG+ +  C++VIRFD   T+ 
Sbjct: 108 GHGTADEGDVQMTFKEQNKVIQKFRSGELNFLIATNVAEEGLDIQPCNFVIRFDFFHTLI 167

Query: 507 SYIQSRGRARQHNSQFILMLERGNLKQRNKLFDI-------------IRSERSVTDT-AL 552
           +YIQSRGRAR  +S++++M+E  NL Q   L +              + +ER+V +  +L
Sbjct: 168 AYIQSRGRARCIDSKYVIMIEDNNLNQIGTLDEFRMLEEAMKSFCQALPAERNVANRFSL 227

Query: 553 SRDPEACFLKACTYVKTKSYIVES-----TGASVTTDSSVNLIHRYCEMLPSDKYYTPKP 607
           S +    +     Y   + Y+  +     TGA++T  ++V LIHRYC  LPSD +   KP
Sbjct: 228 SME---GYESDNEYDSDEDYLESAIIDMDTGATITKQNAVPLIHRYCSSLPSDSFCVLKP 284

Query: 608 IFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
           IF++ +A E Y+C LTLPSNA  Q +  P  R+K+L+K LV L+AC +L ++ AL+ HLL
Sbjct: 285 IFEHIAAGEGYKCILTLPSNAAIQKVESPFVRSKDLAKALVALQACSELKRLDALDRHLL 344

Query: 668 P 668
           P
Sbjct: 345 P 345



 Score =  133 bits (334), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 142/579 (24%), Positives = 230/579 (39%), Gaps = 121/579 (20%)

Query: 946  TFVNYFSEKYGIVLIHP-GQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMH 1004
            TF++Y+ +     +IH   QP++ +++     + L   + GG     SK    T      
Sbjct: 678  TFIDYYRDLGDKFVIHDYEQPMIEVERLKRGMDFL---HPGGNMPARSKGPART------ 728

Query: 1005 VHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILE 1064
              + P+   +  V  SV  ++ ++PS+M R++SL+L    R   +       I    +LE
Sbjct: 729  -WVVPQFCTQYFVNASVYIAMLMIPSIMTRIDSLLLCYDSRARYD-----LPITDEYMLE 782

Query: 1065 ALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL 1124
            A T          ERLE LGDS+LK+  +  L++ +P  +EG+L   R   VCN  L++ 
Sbjct: 783  AYTMPSASMEMDYERLETLGDSLLKFIATIRLYINFPFSNEGELHHLRIRVVCNRALYRA 842

Query: 1125 GTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP 1184
                K   Y+   AF+ R W  P   S          DT+E                   
Sbjct: 843  AKRLKFYRYVTSQAFNRRHWRPPHFTSTAD-----NADTME------------------- 878

Query: 1185 CDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASL 1244
              +    +  KT+AD  EA +GA Y+  GL   L+    + I  D      D  +     
Sbjct: 879  -SLKKHKLSDKTLADIVEASLGAAYLSSGLEGCLHTAIQMQIPFDQIEKWSDFNVAFEES 937

Query: 1245 RSYVP--------RINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY--CYQN------ 1288
            R  VP        R+ ++  I+  +  EF    L+ EA+THAS+      CYQ       
Sbjct: 938  RKAVPPRAEVKALRMLDLPKIQVLVDREFNKPLLVVEALTHASLPNSTSPCYQRLEFLGD 997

Query: 1289 --------------------------------------------LYKHLQHCSTLLLSQI 1304
                                                        L+KH+ H S  L+  I
Sbjct: 998  AILDFLVIRYLYTKYPDAEPGQITTLKDSCVNNHVLGIICLNNGLHKHIIHYSGKLVRAI 1057

Query: 1305 T---EYVKSFPKPGETT-DSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFK--- 1357
                E V+     G+   +    M  PK L D++ES++GAV +D K +L     +F    
Sbjct: 1058 NTLEEEVQELKDTGKAVGEYWADMNIPKVLSDVVESMLGAVFVDAKFDLSPCAALFDKWF 1117

Query: 1358 -PILSPIVTPDKLELPPLRELIELCDSL---GYFVKENCTLKGEMVHAELRLQLKDVLLV 1413
             PI    VTP+ + + P+R+L+    +    G+ ++ + T +      +  + L D  L 
Sbjct: 1118 VPIFDANVTPELVRIHPMRKLLTDLQAFGCEGFMLRNHSTGESGPTSQKCVIFLHDKSLA 1177

Query: 1414 GEGQERSRKAAKGKAASQLLKKLE--------VCEKRIS 1444
              G + + K A+ +AA +  ++LE        VC  RIS
Sbjct: 1178 C-GADWNIKVARRRAAEKASQRLEDEPGLLESVCNCRIS 1215


>gi|390603552|gb|EIN12944.1| P-loop containing nucleoside triphosphate hydrolase protein
           [Punctularia strigosozonata HHB-11173 SS5]
          Length = 1524

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 206/783 (26%), Positives = 331/783 (42%), Gaps = 134/783 (17%)

Query: 35  PSSSTNSINF-IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK 93
           P+++T++    + R YQ ++   +  RN +  ++TG+GKT IAV+ IK  ++       K
Sbjct: 6   PNTTTDNGALPVSRSYQREMLAESLHRNIVIAMDTGSGKTHIAVLRIKYESE----RESK 61

Query: 94  KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVMTP 152
           K+  F+APTV L  QQ +V+       V    G+   D+W D++ WQ+ I  N V+V TP
Sbjct: 62  KVSWFVAPTVALCEQQREVLATALPVSVGIISGSLEPDQWKDARIWQRVIETNRVIVSTP 121

Query: 153 QILLDALRKAFLSL-DIVCFIVIDECHHATGNHPYTKIMKEFYHK--------------- 196
           Q+LLDA+R  ++ +   +  ++ DE HHA   HPY  IMKEFY +               
Sbjct: 122 QVLLDAMRHGYVDMGQHINLLIFDEAHHAADKHPYNLIMKEFYFRLPPRGTGETPLSANS 181

Query: 197 --SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFT-----------IEDK 243
             +  +P + G+TASP      S   + E   + +E+ LDS +             +   
Sbjct: 182 SINRERPMILGLTASP------SFGGNLEKAFAIIEANLDSTIRAPRIFREELAAHVHRP 235

Query: 244 TEMEVFVPSAKESC-RFYDQSKFCGSDLKGKLEVSWSKFDASLSK-----LQGSQLNCYK 297
           T   V  P   E   R   ++    + +   L++    +  SL +     L G + N   
Sbjct: 236 TFKHVLYPLPTEDYGRPSSRNAQALNAVVASLDIGQDPYVISLRQQLQRALPGPERN--- 292

Query: 298 DMDDK-HKTLRKQLSDYH--------AKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348
            +D K  KT++K+ S  H        A +  C D LG   A   V+  +E+   + E   
Sbjct: 293 RIDQKLSKTIQKKDSYSHKGLREFARAALDICYD-LGPWPADWYVRKVIERAQASGESFN 351

Query: 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY-SKAVDLGYISTKLHELLQLFL 407
               SS   ++   E  ++    L L  ++ LD   D   +A  +   S K++ L+   L
Sbjct: 352 TTGMSSWHNRWRGTEKTYL----LELLGRVNLDDPVDLDDEATLVNGCSEKVNLLISSLL 407

Query: 408 SFGKSTQ-----VLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTSVD----- 456
           S   + +        ++FV R  +   +   + + P       V  L GS+ SV      
Sbjct: 408 SEKLAAEEDHELFTGLVFVTRRDSVLALAEILSRHPRTRGAFKVGCLLGSSDSVKRRAFL 467

Query: 457 ----ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
                L  + Q E LE  + G+ NL+ +T V EEG+ +  C  V R+D P  + S+ QSR
Sbjct: 468 DITRELLVQSQTETLEDLKIGEKNLIISTAVAEEGIDIQACGAVFRWDPPPNMVSWAQSR 527

Query: 513 GRARQHNSQFILML-------------ERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC 559
           GRAR+  S F LM              ER   +  N  +D  R           R+PE  
Sbjct: 528 GRARKKKSTFTLMFDDSGAHAKMVEQWERLEREMMNMYYDPSRD---------MREPEDG 578

Query: 560 FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK--------- 610
             +     +   + V STGA +T  S+V  ++ +C  +P  ++    PI+          
Sbjct: 579 MGEHIGVDEVLEFKVPSTGALLTLQSAVTHLNHFCACIPGGQH---APIYDIDPPDLPEG 635

Query: 611 -------YKSAEEAYECELTLPSNAP---FQTIVGPTSRNKNLSKQLVCLEACEKLHQVG 660
                  +   +  + C + LP   P    +  VG    +K  ++      A   L++ G
Sbjct: 636 WHATQTTFTPYQGPWGCVVILPRLLPRHLREFRVGREYTSKASARNHAAFFAYRSLYEAG 695

Query: 661 ALNDHLLP--SVEEPSENNLISKKNESLPG----AGT-TKRKELHGTTPIRALSGRWGEK 713
            LNDHLLP  SV EP    L+ +  + L      AGT T   ++    P+    G W   
Sbjct: 696 LLNDHLLPITSVIEP---ELVEEIKQLLSDIEKRAGTATVSSQMDPWAPLPNAKGLWKMT 752

Query: 714 CGV 716
           C V
Sbjct: 753 CQV 755



 Score =  110 bits (274), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 153/339 (45%), Gaps = 41/339 (12%)

Query: 953  EKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELL 1012
            EKY  + I    PLL LK     HN+L+           +K           + +P +  
Sbjct: 918  EKYSDMPIK--YPLLLLKPGSRRHNMLIPRTLDEVPSSDAKP----------ILLPADAA 965

Query: 1013 VRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCC 1072
              + +  +  +   LLPS+++RL   M A+ LRE +    R   IP  L+  A+T     
Sbjct: 966  TAILLSQAESEYALLLPSILRRLTVTMTAASLREMLFLSPRLRSIPLDLLTAAITAPVSG 1025

Query: 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQG 1132
            E  + +RLE LGD+ LK+  S  L   YP  HEG LS ++  AV N  L K+   ++L  
Sbjct: 1026 EIRNYQRLETLGDTALKFMASISLLTDYPLWHEGYLSKKKDHAVANVRLAKIALSKELYR 1085

Query: 1133 YIRDSAFDPRRWVAPGQLSLRPVPCE---CGVDTLEVPLDGKFFTQDTKVVVGKPCDMGH 1189
            ++    F  ++W        RP   E      D  ++P        +++V        G 
Sbjct: 1086 WMIRDRFIVKKW--------RPKLAEWQKSSGDEKKMP--------ESEVDTNAEKGRGQ 1129

Query: 1190 RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP 1249
              +  K +AD  EA+IGA Y+ G    A+ + +   I  D++      CI R  +R+   
Sbjct: 1130 PQLSMKMLADIVEAIIGAAYLHGSFDLAVEVTRLFDIGIDIKTPPT--CIERILVRAQA- 1186

Query: 1250 RINEIKDIESKI-------GYEFTVKFLLQEAITHASVQ 1281
             ++++++I S+I       GY F  K LL EA+THAS+Q
Sbjct: 1187 SVDDLREIPSQIDVVERMLGYSFNNKVLLVEALTHASLQ 1225


>gi|156044530|ref|XP_001588821.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980]
 gi|154694757|gb|EDN94495.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1515

 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 188/715 (26%), Positives = 328/715 (45%), Gaps = 108/715 (15%)

Query: 13  GEVHSPNPPDMGSSGHDHAVDGPSSSTN-----SINFIPRIYQLKVFEVAKRRNTIAVLE 67
           G++ +    D+ SS  + A++   + +      ++   PR YQL++ E + + N I  ++
Sbjct: 69  GKISNEIVEDLCSSTTESAIENEDAISEEEKGKNVTVTPRTYQLEMLEESLKGNIIVAMD 128

Query: 68  TGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH-TDFEVEEYYG 126
           TG+GKT +AV+ I    + ++ +   KLI FLAPTV L  Q  + ++++ +   V+   G
Sbjct: 129 TGSGKTHVAVLRILAELERMEPD---KLIWFLAPTVALCTQHNEYLQLNISSVLVKLLVG 185

Query: 127 AKGVDEWDSQCWQKEINKNDVLVMTP-QILLDALRKAFLSLDIVCFIVIDECHHATGNHP 185
           + GVD W  Q     I K+  + ++P Q+LLDAL   F+ ++ +  I+ DE H+     P
Sbjct: 186 SDGVDRWTEQRQWDAILKDVKIAVSPYQVLLDALAHGFVRMERLSLIIFDEAHNCLNKAP 245

Query: 186 YTKIMKEFYHKSDN---KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE- 241
             KIM  FYH   +    P + G++ASPV+R    S       +S++E TLD+   T + 
Sbjct: 246 GAKIMTSFYHPYKSISPLPHILGLSASPVIRSDPQS-------LSKIEETLDAVCRTPKI 298

Query: 242 DKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKD--- 298
            + ++ + V     S   Y+             E   +K  ASL K+    LN  +D   
Sbjct: 299 HQADLRLRVKLPILSIIEYNPEP----------EYLMTKTVASLGKVI-QDLNISEDPYV 347

Query: 299 -------MDDKHKTLRKQLSDYHA------KILY-----CLDELGLICAYEAVKICLEKV 340
                   +   + L K L++Y        +++Y      L ELG   A   +   + K 
Sbjct: 348 LALKSSGSEKSQRELAKLLNNYKTNSQRELRLIYNTGKTILVELGSWAADYYISAVVTKY 407

Query: 341 LKAQEECEIYRQSSLQC--KYFLEEVLHVIG---SALPLADKIFLDFGFDYSKAVDLGYI 395
           LK  +  E++    L    + ++ + L  +G   S   LADK                  
Sbjct: 408 LKTMKAREVFVVMDLAATERLYIAKALKQVGISPSVFSLADK-----------------T 450

Query: 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTS 454
           S K+ +LL + L   +      IIFVE      V+   + + P       +  + GS+++
Sbjct: 451 SDKVAKLLNIILQ--QEPPFSAIIFVEERATVFVLADLLSQHPLTKERFKIGTMVGSSSN 508

Query: 455 V-------DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
                   + +    QK+ L  F+ GK+++L AT+V+EEG+ V  C+ VI F  P  + S
Sbjct: 509 SKRTQIVGELVDLDKQKDTLSRFKLGKIDILIATNVLEEGIDVRACNLVICFSKPSNLKS 568

Query: 508 YIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYV 567
           +IQ RGRARQ +S+ IL+   G      K+ D    ER++       + E   L+  + +
Sbjct: 569 FIQRRGRARQQDSKLILLDPLG-----GKVIDWHELERNMRKMY---ENEMRELQHISEI 620

Query: 568 KT--------KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKP--IFKYKSAEEA 617
           +T        +   VESTGA +  D++V  ++ +C +L +  +   +P  ++ +    + 
Sbjct: 621 ETADEQSEDGRVLRVESTGAQLDLDNAVPHLYHFCSVLTAKDFVDLRPDFVYSFDLGTDF 680

Query: 618 YECELTLPSNAPFQTIVGPTSRNKNLSK----QLVCLEACEKLHQVGALNDHLLP 668
              ++  P + P +T+    SR   LS+    +    EA   L++ G +ND+LLP
Sbjct: 681 VRAKVIFPLSVP-ETLRVHESRGVWLSEKGAAKDAAFEAYVALYKGGLVNDNLLP 734



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 123/285 (43%), Gaps = 55/285 (19%)

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPS-SLILEA 1065
            +P  + V+  +P  +V+   ++PS+   +E  ++  +L + I    ++  I    L+  A
Sbjct: 966  LPASVCVQDAMPFQLVQFGMMIPSITHHIEVQLIVDRLCKTI---LKDLEISDRGLVQTA 1022

Query: 1066 LTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG 1125
            +T      + + +RLE LGDS+LK   S  L   YP   EG LSA +   V NS   +  
Sbjct: 1023 ITHASYSLTSNYQRLEFLGDSILKLCTSVQLISEYPLWPEGYLSAMKDRIVSNSRSSRAA 1082

Query: 1126 TDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPC 1185
             +  L  YI    F   +W        RP+  E  + T E                    
Sbjct: 1083 VELGLDEYIITKKFTGSKW--------RPMYVEDYLKTTE-------------------- 1114

Query: 1186 DMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMK-------WLGIDADLEVSL---- 1234
                R M SK ++D  EALIGA  V GG+  AL  ++       WL ++   ++SL    
Sbjct: 1115 -QKSRQMSSKVLSDVVEALIGACMVDGGIPKALKSLQLFFPELNWLPLETR-QMSLYQLA 1172

Query: 1235 VDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
             DD         ++P    ++ IE  + Y FT K LL EA+TH S
Sbjct: 1173 ADDL--------HLP--IALQPIEQILAYTFTKKSLLVEAMTHPS 1207


>gi|378734261|gb|EHY60720.1| hypothetical protein HMPREF1120_08668 [Exophiala dermatitidis
           NIH/UT8656]
          Length = 1469

 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 187/674 (27%), Positives = 304/674 (45%), Gaps = 76/674 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ+++FE + + N IAV+ TG GKT +A + I    +A       K I F AP+V L 
Sbjct: 27  RAYQIEMFEHSMKGNVIAVMGTGTGKTQVAKLRI----EAEFERSPIKRIWFTAPSVVLA 82

Query: 107 HQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRKAFL 164
           +QQY  +      F+     G    + WD+Q  W K ++  + +V TP ILL AL   F+
Sbjct: 83  YQQYCFLSWQLPAFQFRLITGMDNAEFWDTQEVWDKALHNINGVVSTPAILLQALDGGFV 142

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKVFGMTASPVVRKGVSS 218
           S+  +  +V+DE HH         IMK  YH           P + G++ASP+ +K    
Sbjct: 143 SMKTISLLVVDEAHHCVAKSLVNTIMKVHYHPVKKANCPYELPHILGLSASPITKKS--- 199

Query: 219 AMDCEGQISELESTLDSQVFT-IEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE-- 275
                 +I+ELE+ LD+Q  T ++   E   FV   +     +D+     + L  +L   
Sbjct: 200 ----PAEITELEANLDAQCKTPLQQLEEYTAFVNMPEIVILTFDEEMTPDARLLTQLSSL 255

Query: 276 VSWSKF--DASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD----------- 322
           VS  +F  D  + KLQ       KD     + LRK +       +  L+           
Sbjct: 256 VSDLRFTDDPIMKKLQ------EKDDQKAAEKLRKIIHKGATPAMTELNTLLRSATTIQQ 309

Query: 323 ELGLICAYEAVKICLEKV---LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
           +LG       +  C+ K+   ++     EI+   +   + F+E  L       PL   + 
Sbjct: 310 DLGRWACETYITACVRKLHCAVRNAAGLEIHPGLTHDNRPFMESTLR------PLHASLG 363

Query: 380 LDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
              G   S   DL   S K+  LL  FL     + V  +IFV     A  +   +   P 
Sbjct: 364 APGGGSLSSPEDL---SAKVAILLN-FLRKEYRSDVRGLIFVHARHTAWALTEVINSHPA 419

Query: 440 LTHLTVAYLTGSTT-----SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
           +++       G +      + D     +Q E LE FR G++NL  AT V+EEG+ VP+ +
Sbjct: 420 MSNYRAFSFVGVSNPAYQGAFDFAQLHIQFENLERFRRGQLNLCIATSVLEEGIDVPSMN 479

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL--FDIIRSERSVTDTAL 552
            VI FD    + S++QSRGRARQ NS+++ +  R +L+  +K+  F+   ++      + 
Sbjct: 480 LVISFDARPNLRSFVQSRGRARQRNSKYVEL--RSSLEPYSKIKSFEAWEADMKRKCESS 537

Query: 553 SRDPEACFLKACTYVKTKS---YIVESTGASVTTDSSVNLIHRYCEMLPSDK-YYTPKPI 608
            RD EA   K    +K +    + V STGA++T D++   + R+C  LP +     P+PI
Sbjct: 538 LRDLEA--RKVVESLKEEGGSIFRVPSTGATLTFDNARQSLQRFCSKLPRNADSEPPEPI 595

Query: 609 FKYKSAEEAYE--CELTLPSNAPFQTIVGPTS---RNKNLSKQLVCLEACEKLHQVGALN 663
           F  +  E       ++ LP+  P    V  +    + + ++K+     A   L++ G +N
Sbjct: 596 FCLE-GEIGLRIFAKVYLPTCLPPHLHVVSSQLGWQTERMAKKDAAFHAYLGLYKAGLVN 654

Query: 664 DHLLPSVEEPSENN 677
           ++L P +  P + N
Sbjct: 655 ENLQP-IHWPKDGN 667



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 126/303 (41%), Gaps = 61/303 (20%)

Query: 1001 PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIP-- 1058
            P     +P +  V + VP+   + + L+PS+   LE       LR    C      +P  
Sbjct: 883  PPQQRSLPVDQCVLLGVPVDYARLMLLVPSITHMLEVC-----LRTAAACQGPLAGLPLV 937

Query: 1059 -SSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1117
               L+ EALT L      + ERLE LGD +LK+  S   F+  P   E  L+  R+  V 
Sbjct: 938  DMDLVSEALT-LPRVGPRNYERLEFLGDDLLKFYTSIQGFVDNPTYPESGLTIARNRIVN 996

Query: 1118 NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDT 1177
            N+ L +      L+ ++    F    W A             GV   +   +G   + DT
Sbjct: 997  NARLQRATRTLALEQFLTQHRFSGAEWTA-------------GVSKED--REGHGDSTDT 1041

Query: 1178 KVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGG----------------GLIAALYM- 1220
             V  G+        + SKT+AD  EALIGA  + G                G+IAAL + 
Sbjct: 1042 -VAHGEKTH-----LSSKTLADVIEALIGAASLNGSTTTTNGDNIESRSQEGVIAALRLF 1095

Query: 1221 ---MKWLGIDADL-EVSLVDDC-ITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAI 1275
               + W  +  +L  + ++DD  IT   L  Y P       +ES IGY FT   LL EA+
Sbjct: 1096 LEEVPWRPVSENLVRIHVMDDSEITGYQL--YAP-------VESLIGYRFTRHALLAEAL 1146

Query: 1276 THA 1278
            T +
Sbjct: 1147 TQS 1149


>gi|302901921|ref|XP_003048541.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI
           77-13-4]
 gi|256729474|gb|EEU42828.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI
           77-13-4]
          Length = 1381

 Score =  179 bits (454), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 171/626 (27%), Positives = 280/626 (44%), Gaps = 84/626 (13%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQ ++ E +  RN I  ++TG+GKT +AV+ I+     ++ +   K+I FL  TV L
Sbjct: 16  PRAYQREMLEQSLERNVIVAMDTGSGKTQVAVLRIQ---VELEKSSPDKIIWFLGKTVSL 72

Query: 106 VHQQYDVI-RVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
             QQ+ VI R +    ++   G   +D W  + W K +N   ++V T +IL DAL   F+
Sbjct: 73  CEQQFKVIQRQNPSVSMKILTGQLNIDAWSPEVWPKILNGTRIVVSTFEILHDALTHGFV 132

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVSSAM 220
            + ++  IV DE H+        KIM  FYH+  N     P + G+TASPV+   ++S  
Sbjct: 133 KMSMLSLIVFDEVHNCVKRSSGRKIMLNFYHEDKNAGLPVPAILGLTASPVISSDLAS-- 190

Query: 221 DCEGQISELESTLDS--QVFTIEDKTEME-VFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
                I  LE+T+D+     T+  +  ++ V  P    S   Y +     ++L   L  +
Sbjct: 191 -----IETLENTMDAICTTPTVHREELLQCVNKPHLVRSVYEYKKRSEL-TNLMRALHTA 244

Query: 278 WSKFDAS-------LSKLQGSQ-LNCYKDMDDKHKTL-RKQLSDYHAKILYCLDELGLIC 328
           +   D +        S+ +  + L   +D   ++ T  + Q+     +    L+ELG   
Sbjct: 245 YQNMDITTDPEVLRFSRCRNEENLKRLRDAIMRNDTFSQNQMKGLWNRSRVILEELGSWA 304

Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
           A   V   +   L   +  +     S + + +L   L      +P++       G +   
Sbjct: 305 ADRYVSRLIADFLSRVDAPD--DTWSNENRTYLAGYLR----GVPIS-----SLGNEPPT 353

Query: 389 AVDLGYISTKL-HELLQLFLSFGKSTQVLCIIFV-ERIIAAKVVERFVKKVPFLTHLTVA 446
           A DL + + KL HELL           V+ IIFV ER  A  + +      P      V 
Sbjct: 354 ATDLSHKAAKLIHELL------AAGDDVVGIIFVKERTTANVLCDLLNSSPPVRARYRVG 407

Query: 447 YLTGSTTS------VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
            + G+++S      +         ++LE FR G VNLL AT V+EEG+ VP C+ V  FD
Sbjct: 408 AMVGTSSSRSRTQNMYEFNNGTSTQILEDFRSGVVNLLVATSVLEEGIDVPACNLVACFD 467

Query: 501 LPKTVSSYIQSRGRARQHNSQFILM------------LERGNLKQRNKLFDIIRSERSVT 548
              T+ S+IQ RGRAR   S+ I M            LE G +K+R +  D  R    + 
Sbjct: 468 ETTTLKSFIQRRGRARMQESKMIAMESSLTSSRTWEELEEG-MKRRYQ--DDQRELERLD 524

Query: 549 DTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPI 608
           + A S   ++ +           YI++S+GA +  D++   +  +C+++    Y   +P 
Sbjct: 525 ELARSEQTDSIY-----------YIIKSSGARLDLDNARQHLEHFCQVVFKADYVDRRPE 573

Query: 609 FKYKS-----AEEAYECELTLPSNAP 629
           + ++       E+     LTLPS  P
Sbjct: 574 YIFQKEQNELGEDMLRAVLTLPSGLP 599



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 130/294 (44%), Gaps = 36/294 (12%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLR----EEINCHSRNFHIPSSLILEALTTLGCC 1072
            VP  VVK   L+PS++  +   ++AS+L     + +N +         L+LEA+++    
Sbjct: 878  VPKRVVKVGMLIPSIIHEIGVQLVASELSTTLLQPVNINDLQ------LVLEAISSRSAH 931

Query: 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQG 1132
            E    ERLE LGDS+LKY      +  +P   EG L   +   V N  LH+   +  L  
Sbjct: 932  EPVDYERLEFLGDSILKYCTVIQAYAEHPLWPEGLLVPFKDQLVSNKRLHRACLESGLSK 991

Query: 1133 YIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWM 1192
            +I   AF  R +               G     + LD  F  +++     +P D   R  
Sbjct: 992  FILSKAFTGRSY--------------SGKKWKPLYLD-DFLPEESV----EPLD---RIT 1029

Query: 1193 GSKTIADCAEALIGAYYVGGGLIAALYMMK-WLGIDADL-EVSLVDDCITRASLRSYVPR 1250
            G K +AD  EALIGA +  GG+  AL  +  +LG      E     D +  ++L   VP 
Sbjct: 1030 GHKNLADVVEALIGASFQDGGMDKALKCISVFLGDKCHWHEAGRGRDILFNSALDG-VPL 1088

Query: 1251 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQI 1304
               ++ +E  IGY F  K LL EA+TH S      +Q  Y+ L+     +L  I
Sbjct: 1089 PPTLEPLEELIGYSFRKKSLLIEAVTHGSYAG-DTHQRSYEQLEFLGDAVLDYI 1141


>gi|389740167|gb|EIM81358.1| P-loop containing nucleoside triphosphate hydrolase protein
           [Stereum hirsutum FP-91666 SS1]
          Length = 1537

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 188/716 (26%), Positives = 304/716 (42%), Gaps = 104/716 (14%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ ++ + +   N +  L+TGAGKT IAV+ ++   +   +    K+  FL PTV L 
Sbjct: 14  RGYQQEMLDESLNNNIVIALDTGAGKTHIAVLRMRHEVEKETT----KVCWFLTPTVALC 69

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           +QQ  VI+ H    V    GA   D+W D   W + +  + ++V T  +LL+ALR  ++ 
Sbjct: 70  YQQRSVIQSHLHVPVAMISGALEPDQWKDPNLWSRTLATHRIVVSTHDVLLNALRHGYIH 129

Query: 166 LDI-VCFIVIDECHHATGNHPYTKIMKEFYHK--------SDNKPKVFGMTASPVVRKGV 216
           L   +  +V DE HHA   HPY +IM+EFY +         + +P+V G+TASPV     
Sbjct: 130 LGRHISLVVFDEAHHAADKHPYNRIMQEFYFELPKVDRGDGNVRPRVLGLTASPVF---- 185

Query: 217 SSAMDCEGQISELESTLDSQVFT-IEDKTEMEVFVPSAKESCRFYDQSKFCGS------- 268
               D E    +LE+ LD  +   + +++E+   V   +     Y++ ++          
Sbjct: 186 --GGDIERAFLKLEANLDCTIRAPVANRSELATHVHRPEFKHVIYEEPEYMMGYGEAPSA 243

Query: 269 ---DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKH------KTLRKQLSDYHAKI-- 317
               L+  +E    + D  +  LQ          D         KT+ +Q S  H  +  
Sbjct: 244 SVVSLQSVVESLDIRQDPYVLGLQAELARLPPGPDRSRTDQRLSKTINRQDSYTHKGMRD 303

Query: 318 -LYCLDE----LGLICAYEAVKICLEKVLKAQEECEIYRQSSL---QCKYFLEEVLHVIG 369
                DE    LG   A   V+  LE+     +        +L   + +Y +  +  V  
Sbjct: 304 FFRAADEICSDLGAWAADWYVQTVLEQAWDTMKGPVPEFAGALNNREKQYLMGALSRVQA 363

Query: 370 SALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKV 429
           + +    +  +    D  K +    I T LHE  ++F S+ +    L  IFV R  A   
Sbjct: 364 TPVSYDPEEIVRRSSDKVKKL----IETLLHE-KEVFESYDEEYHGL--IFVTRRDAVIA 416

Query: 430 VERFVKKVPFLTHL--TVAYLTGSTTSVDALTPKVQKEVLES--------FRGGKVNLLF 479
           +   ++  P    +  T A L  S  S       + + +L+         F+ G +NL+ 
Sbjct: 417 LSEILENHPETKDVFRTGALLGMSENSARKAFLDITRNMLKQSNEDTLRDFKVGDLNLIV 476

Query: 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRN---- 535
           AT V EEG+ V  C+ V+R+D P  + S+ QSRGRAR+  S F+LM    ++  ++    
Sbjct: 477 ATAVAEEGLDVQACNNVVRWDPPMNMVSWAQSRGRARRQRSSFVLMFSTASVHAKDVQGW 536

Query: 536 --------KLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSV 587
                   +++++ R  R   +                YV  K    E TGA +T DS++
Sbjct: 537 EYLEQEMVRMYNMERQRREEDEAGEE----DEEDGNEEYV--KPLYNEKTGAKITLDSAI 590

Query: 588 NLIHRYCEMLP-SDKYYTPKPIFKYKSAEEAYECELT----LPSNAPF-QTIVGP----- 636
             ++ +C +LP      +  PI+     E   E        LP   PF  T+  P     
Sbjct: 591 THLNHFCAILPGGGGLGSHSPIYDINPPEFPSEWHAQPIALLPYAGPFGATVTLPKLLDR 650

Query: 637 ---------TSRNKNLSKQLVCLEACEKLHQVGALNDHLLP--SVEEPSENNLISK 681
                        K+ +++ V  EA + LH  G LNDHLLP  SV EP   + + K
Sbjct: 651 RFRVFSTPVIHGRKSYARRRVAFEAYKALHDAGLLNDHLLPLMSVLEPELEDEVKK 706



 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 134/284 (47%), Gaps = 36/284 (12%)

Query: 1020 SVVKSLYLL--PSVMQRLESLMLASQLREEINCHS-RNFHIPSSLILEALTTLGCCESFS 1076
            S V++ Y L  PS+++ L   M    +R+++   S R   IP  L+  A+T+       +
Sbjct: 970  SFVETQYALWMPSILRYLSITMTVCAMRDDLLLGSPRLSAIPLKLLTTAVTSGVAQMGMN 1029

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +RLE LGD+VLK+  S +L   YP  HEG L+ R+  AV N+ L K   ++KL  YI  
Sbjct: 1030 YQRLETLGDTVLKFVTSLNLLSEYPFWHEGYLARRKDHAVSNAQLAKAAYEKKLFKYIIR 1089

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTK----VVVGKPCD------ 1186
              F PR+W           P   G   +E P D K   +D +     VV +P        
Sbjct: 1090 DMFAPRKW----------RPTYIGGAKVEPPSDAK--AEDPEDMAPTVVKRPQKGPSEAK 1137

Query: 1187 -----MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLE----VSLVDD 1237
                      + +K +AD  EALIGA Y+ G    A+  +K  G+    E     + ++ 
Sbjct: 1138 KKQRAKAQGEISTKVLADVVEALIGAAYIHGSFDLAVECIKVFGLGLSCEWLPIAARIEP 1197

Query: 1238 CITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             ++R     + P   ++  +E+ +GY F  K LL EA+THAS Q
Sbjct: 1198 MLSRVIELEFFP--TQLSAVENILGYTFERKALLVEALTHASYQ 1239


>gi|397615349|gb|EJK63376.1| hypothetical protein THAOC_15968 [Thalassiosira oceanica]
          Length = 1692

 Score =  179 bits (453), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 193/701 (27%), Positives = 313/701 (44%), Gaps = 131/701 (18%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDI------------AQAIKSN---- 90
           R YQ+ + E  KR N I  L TG GKTMI++MLI+D             A  I++     
Sbjct: 280 RNYQVHLLEKCKRSNVIVHLATGMGKTMISIMLIRDYLSKRQAASDTAPASTIETTLASG 339

Query: 91  --GF------KKLIIFLAPTVHLVHQQYDVIRVHTDFEVE-----EYYGAKGVDEWDSQC 137
             G       K+ I+FL P++ L  Q  D +R + +  V        + A+  D      
Sbjct: 340 QEGLVSRVYSKRQILFLVPSIALCVQHSDTLRANLNCTVATACHTSSHTARSRD------ 393

Query: 138 WQKEINKNDVLVMTPQILLDALRK--AFLSLDIVCFIVIDECHHA-TGNHPYTKIMKEFY 194
              EI+++DV+V T     D L+     L+L  +  +VIDE H+A T +H Y  IMK FY
Sbjct: 394 ---EISRSDVIVATHGTAKDLLQHYPDVLALSNLDLMVIDEAHYAGTKDHNYATIMKLFY 450

Query: 195 HK--SDNKPKVFGMTASPVVRKGVS-SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVP 251
           H      +P V G+TASP++   VS +A   + ++ ELE TLDS++    +  E+     
Sbjct: 451 HTLPVGLRPHVLGLTASPLINAKVSDTAERLQVKLGELERTLDSKLHGFPE--ELADCRK 508

Query: 252 SAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLS 311
             KES  ++D                 S  D+  +KL         DM   HK+ RK+L 
Sbjct: 509 DTKESIVYFD-----------------SLLDSFSTKLPE------PDMTFLHKSRRKELR 545

Query: 312 DYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSA 371
              A      D++GL      +   L ++ + + + E   Q +   K +L +V+      
Sbjct: 546 QLQA----LCDDVGLQVTSTYIIALLREIGRNEYDHETIEQFN-DLKVYLSQVV------ 594

Query: 372 LPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE 431
                 I L+   D     D    + K+  L+ L +   K    + ++FVER I A  + 
Sbjct: 595 ------IHLNRQVDEGDCGDFSGHTEKMSTLVGLLVDLLKHDDPVGVVFVERRITAIALS 648

Query: 432 RFVKKVPFLTHLTV---------------AYLTGSTTSVDALT-------PKVQKEVLES 469
            +  +   L HL V                YL+ S++    +         K  + V+  
Sbjct: 649 HYFNQNKPLDHLGVDIRSDSLVRNASKIFKYLSNSSSHDQQVVDQDFLHQTKRIRSVINK 708

Query: 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG 529
            R  + N+L AT V+EEG+ V  CS++I FD  KT+ SYIQ +GRARQ  + F  ++++ 
Sbjct: 709 LRTRETNVLIATSVVEEGVDVEACSFIISFDRMKTIKSYIQMKGRARQKQASFYTLVDKC 768

Query: 530 NLKQRNKLFDIIRSERSVTD------TALS-----RDPEACFLKACTYVKTKSYIVE--- 575
              Q   L D  ++E+ + D      TA++     RDP   +  +    + ++ +     
Sbjct: 769 E-SQILDLPDAQKTEKRIHDFVASSQTAINLSQPLRDPANAYFDSPYSTEEEAAMHRGKY 827

Query: 576 STGASVTT-DSSVNLIHRYCEMLPSD--KYYTPKPIFKYKSAEEAYECELTLPSNAP--F 630
           ST  S     S+ +L++RY   +P D     + + +  +    +  E  L+LPS+ P  F
Sbjct: 828 STRISFADLQSAKSLLNRYSMSVPIDPSSRSSKEAMTLHMPCYQERENSLSLPSHLPPEF 887

Query: 631 QTIVGPTS-RNKNLSKQ--LVCLEACEKLHQVGALNDHLLP 668
           + +  P   R +N  ++  L+ L +  +LH++G LND LLP
Sbjct: 888 RIVSLPRELRGQNAKRKMNLLALASIVRLHKLGLLNDRLLP 928



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 150/389 (38%), Gaps = 70/389 (17%)

Query: 922  SIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHN-PHNLLV 980
            S+  IV   S     DG  + +  +F++YFSEKYG+  + P   L   K+  + PH+  V
Sbjct: 1124 SVSYIVYGPSGNLCRDGFPNTEYTSFLHYFSEKYGVTTLCPTSKLFVAKRVWDMPHSHSV 1183

Query: 981  NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPI---SVVKSLYLLPSVMQRLES 1037
                  G G   +   +      ++ +P E  V  + P+   S+V    LLP  +  +E 
Sbjct: 1184 L-----GPGAAEEDVAHAA----NLELPAE--VCQESPMADPSIVLQSTLLPQFLYLVER 1232

Query: 1038 LMLAS------QLREEI--NCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLK 1089
             + A       Q   E+   C SR    P S ++E LTT  C      ERLE LGD+VLK
Sbjct: 1233 RLTAEAFIRHCQENYEVLGECLSRAG--PDS-VMEVLTTKTCRMPQDYERLEWLGDAVLK 1289

Query: 1090 YAVSCHLFLTYPKK---HEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVA 1146
              V     L Y      HEG L   RS    N  L ++  +     +I     +   W  
Sbjct: 1290 L-VQTDSLLQYSDTSYLHEGYLHMLRSVMGSNERLERVAEECGFNHFILSCPLNREEW-R 1347

Query: 1147 PGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
            P +L LR                 K     TK +   P          K  AD  EA++G
Sbjct: 1348 PSRLQLR-----------------KHDDSSTKALPPTP--------SGKVCADVVEAILG 1382

Query: 1207 AYYVGGGLIAALYMMKWLGIDADLEVSLV---DDCITRASLRSYVPRINEIKDIESKI-G 1262
              +V  G   +        ++  LE+ L     D ++R    S +    E+    +   G
Sbjct: 1383 LIFVQFGFAKS--------VEVSLEIGLTFVNADKLSRRDFWSALEDDGELLAFATNFTG 1434

Query: 1263 YEFTVKFLLQEAITHASVQEFYC--YQNL 1289
               +   LL EA+TH S     C  YQ L
Sbjct: 1435 QPISDPRLLHEAVTHPSCVSKPCRSYQTL 1463


>gi|413918888|gb|AFW58820.1| hypothetical protein ZEAMMB73_649074, partial [Zea mays]
          Length = 237

 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 137/217 (63%), Gaps = 5/217 (2%)

Query: 45  IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           I R YQL + + A   N I  L TG GKT IAV+L+ ++   I+    +++ +FLAPT+ 
Sbjct: 24  IARKYQLDLCKRAVDENIIVYLGTGCGKTHIAVLLMYELGHLIRKPS-REVCVFLAPTIP 82

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           LV QQ  VI   T+F+V+ YYG+ G    D Q W+KE+ + +VLVMTPQILL  LR  F+
Sbjct: 83  LVRQQAMVIADSTNFKVQRYYGS-GKHSRDHQAWEKEMGEYEVLVMTPQILLHNLRHCFI 141

Query: 165 SLDIVCFIVIDECHHATGN--HPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDC 222
            +D++  ++ DECHHA     HPY +IMKEFY+ +D  P+VFGMTASP++ KG S+ +  
Sbjct: 142 RMDLIALLIFDECHHAQAQKRHPYAQIMKEFYNNADKHPRVFGMTASPIIGKGGSNKLTY 201

Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF 259
              I+ LE  L+++V ++ D  E+E  + S K    F
Sbjct: 202 TKCINSLEELLNAKVCSV-DNVELESVIASPKVEVYF 237


>gi|296417821|ref|XP_002838549.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634492|emb|CAZ82740.1| unnamed protein product [Tuber melanosporum]
          Length = 1490

 Score =  178 bits (451), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 180/672 (26%), Positives = 291/672 (43%), Gaps = 103/672 (15%)

Query: 98  FLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEW-DSQCWQK--EINKND--VLVMT 151
           FL P V L +QQY+V++       ++   G   VD+W D + W +   I  ND  V+V T
Sbjct: 16  FLVPNVSLGNQQYEVLKASLPPVNIQFLSGGDKVDKWSDQEIWDEILGIKDNDHAVVVST 75

Query: 152 PQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMT 207
            Q+LLDAL   F+ ++ +  IV DE HH  G HP  +IM+EFYH    K    P V G+T
Sbjct: 76  HQVLLDALTHGFVRMEGIGLIVFDEAHHCVGQHPANRIMQEFYHPRVRKGLEVPAVLGLT 135

Query: 208 ASPVVRKGVSSAMDCEGQ-----------ISELESTLDSQVFT-IEDKTEM--EVFVPSA 253
           ASPVV+           +           +  +E+ L++   T + ++ E+   V  P  
Sbjct: 136 ASPVVKSTPDQLRHVSPKFWIGVLANWVYVRVIETNLNAISRTPVRNREELLRHVHPPVL 195

Query: 254 KESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSK-LQGSQLNCYKDMDDKHKTLRK---- 308
           K        +     D    L+++W+  D      ++  Q     D+     T+ K    
Sbjct: 196 KRIQGVATDNVPSALD---SLQLAWATMDIRQDPYIKALQSANPPDLGRIETTISKRNTY 252

Query: 309 ---QLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE---IYRQSSLQCKYFLE 362
              Q+     K  +   E G       +K  ++K +K  +E +   ++ + + + K +L+
Sbjct: 253 CQVQMRGLLNKAFHLRKEFGAWSVDCYLKHAIQKAIKFADEEDPESMWMEWNNEEKRYLK 312

Query: 363 EVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKST--QVLCIIF 420
            +L  I  A+P       D G      ++ G +S K+ +L+++ L   K    +   +IF
Sbjct: 313 SILSKI--AVPR------DIG-----PIE-GRLSDKVEKLIEVLLGEHKDDGGKFAGLIF 358

Query: 421 VERIIAAKVVERFVK-----KVPFLTHLTVAYLTGSTTSVDALTP----KVQKEVLESFR 471
           VE+ +   ++   +K     K  F     V    G+  +  A+      K Q E +E FR
Sbjct: 359 VEQRVGVSILAEILKTDSRTKDIFRVGTVVGVSEGNGRTRKAIYELVNLKGQYETIEDFR 418

Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNL 531
            GK NL+ +T V+EEGM +P C  V+ F LP  + S+IQ RGRAR   S ++LM   G+ 
Sbjct: 419 AGKKNLVVSTSVVEEGMDIPACRLVVCFSLPPNLKSFIQRRGRARMAKSNYVLMFNEGDT 478

Query: 532 KQRNKLF------------DIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGA 579
           + +   F            D  R   + T T      E   L      + + + +ESTGA
Sbjct: 479 QGKIDKFKQLEMDMIEEYLDETRKLEAETKTETEDPDEDSILNKG---RNRRFQIESTGA 535

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYK-----------------SAEEAYECEL 622
            +T DS+V+ +H +C  LP  +Y   +PIF                    SA   Y  E+
Sbjct: 536 LLTLDSAVSHLHHFCNCLPRGEYMDLRPIFHTWIVNQEQLDTLKAMGSGLSARPLYMAEV 595

Query: 623 TLPSNAPFQTIVGPTSR----NKNLSKQLVCLEACEKLHQVGA---LNDHLLPSVEEPSE 675
            LP N     +    SR     +  +K+    EA   L Q+     ++DHL+P ++   +
Sbjct: 596 LLP-NCIAPEVRRARSREAWGTEKWAKRDAAFEAYLALRQLQGDPLIDDHLMPLLQTDPD 654

Query: 676 NNLISKKNESLP 687
               +KK E  P
Sbjct: 655 IADATKKLEKRP 666



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 130/274 (47%), Gaps = 32/274 (11%)

Query: 1009 PELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFH-IPSSLILEALT 1067
            PEL     VP    +    LP +++R+E   +A+ L E    H   F+ IP   ++ AL+
Sbjct: 886  PELCTVDVVPWKYSQFAMYLPGIIRRIEMSFIAADL-ERTLLHPVGFNSIPK--MVTALS 942

Query: 1068 TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTD 1127
                 ES   +R E LGDSVLK+  S +L   +P  HEG L+ ++   V NS L +   D
Sbjct: 943  ASSARESTDYQRFEFLGDSVLKFLTSVNLLDEHPFWHEGYLTRKKEQMVANSRLARAAID 1002

Query: 1128 RKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM 1187
             +L  +I    F   +W        RP           +  + +F  +  K         
Sbjct: 1003 NRLAKWIITDIFTGSKW--------RP--------RYVISEEEEFPEKKRK--------- 1037

Query: 1188 GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSY 1247
            G + + +K +AD  EALIGA Y+ G    AL +++  G++ + + SL +   +  +  S 
Sbjct: 1038 GPKQLSTKILADVVEALIGAAYLEGNYPKALKVIRAFGLNINWK-SLEERTTSLLNRASR 1096

Query: 1248 VPRIN--EIKDIESKIGYEFTVKFLLQEAITHAS 1279
             P ++   +K +ES IGY FT K LL EAITH S
Sbjct: 1097 YPEVHLSHLKGLESLIGYHFTHKALLLEAITHPS 1130


>gi|158706450|sp|A2QX45.2|DCL22_ASPNC RecName: Full=Dicer-like protein 2-2; Includes: RecName:
           Full=Endoribonuclease dcl2-2; Includes: RecName:
           Full=ATP-dependent helicase dcl2-2
          Length = 1362

 Score =  178 bits (451), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 185/691 (26%), Positives = 305/691 (44%), Gaps = 80/691 (11%)

Query: 25  SSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA 84
           +S  D+  D    +T+++    R YQL++   + +RN I V+ TG GKT +A++ I  +A
Sbjct: 2   TSSTDYHADSTPGTTSNMELRIREYQLEMLNESLKRNLIVVMPTGTGKTQVAILRI--LA 59

Query: 85  QAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINK 144
              K N   K +  L PTV L  QQY  I+  T F      GA+     D   W   ++ 
Sbjct: 60  DIDKGNS-DKFVWLLCPTVALSEQQY--IQYATVFLPS---GAE-----DKAIWDNALSG 108

Query: 145 NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-----DN 199
             + V T Q+L DAL   F+ L  +  ++ DE HH   +H   KIM+  YHK       N
Sbjct: 109 IKIAVSTYQVLYDALSHGFVKLSQMSLLIFDEAHHCKKDHVANKIMQVHYHKQHQSGVQN 168

Query: 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE---- 255
            PK+ G+TASP +   +SS    E  +  +  T       +   T   + +P        
Sbjct: 169 LPKILGLTASP-ILSDLSSLEIVESNLGSICKTPRQYYAQLLQFTNRPLILPRLPTYTIP 227

Query: 256 --SCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDY 313
             S +     K CG  L  + EV       S SK++  QL   +      +++ +     
Sbjct: 228 NCSVKAPILEKLCGI-LSSEDEV------PSSSKMKSKQLKHIRRFMQTSESINQ----- 275

Query: 314 HAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY---FLEEVLHVIGS 370
                    ELG+  A E ++   + ++  +E   +  + +    Y   F  E+L  +G 
Sbjct: 276 ---------ELGIWAATEYMR---KSIMHFKESMRMGAEKTNISNYGKDFAMEILTRLGK 323

Query: 371 ALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430
                         D S A+    IS     LL   LS         ++FV +      +
Sbjct: 324 LQ------------DCSPAIQPEEISPMCQCLLDE-LSKAYREGFCGLVFVTQRATVLAL 370

Query: 431 ERFVKKVPFLTHL-TVAYLTGSTTSVDALTP-------KVQKEVLESFRGGKVNLLFATD 482
           +  ++  P  +HL T     G +T+  + T        + Q E LE FR G +NL+  TD
Sbjct: 371 KWLIENHPLTSHLFTCGTFIGMSTTQYSKTELGNLHDIRNQTETLEKFRQGSLNLIITTD 430

Query: 483 VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIR 542
            +EEG+ VP C+ V+ F+   ++ S+IQ RGRAR+ NSQFI+++E  +  +  K  ++  
Sbjct: 431 ALEEGIDVPACNTVLNFNCQLSLKSFIQRRGRARRENSQFIIIMEDESGPRYLKRLEMEE 490

Query: 543 SER-SVTDTALSRDPEACFLKACTYVKTK-SYIVESTGASVTTDSSVNLIHRYCEMLPSD 600
            E       A  R   A  L    Y +   S  ++ TGA +    +V  ++ +C  LP+ 
Sbjct: 491 IELVQKLQNAERRQIPANELDFDKYERISLSLDIDRTGAQLIMREAVGYLYNFCSKLPAQ 550

Query: 601 KYYTPKPIFKYKSAEEA-YECELTLPSNA-PFQTIVGPTSRNKNL--SKQLVCLEACEKL 656
            Y + KP+F Y+      +   + LPSN  P       +     L  +++   L+A + L
Sbjct: 551 LYVSNKPLFTYERNNYGRFRAVVKLPSNLDPSLQSFSSSRSWSRLKYAREDAALQAYKAL 610

Query: 657 HQVGALNDHLLPS-VEEPSENNLISKKNESL 686
           +Q G +ND+L+P+ V +  E ++I + + S+
Sbjct: 611 YQAGLVNDYLVPTQVSDHLEGDIIFRSHYSI 641



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 104/253 (41%), Gaps = 31/253 (12%)

Query: 1029 PSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVL 1088
            PS+   +E  M+A  LR+E++  S        L+  A+         +   L  +GD+ +
Sbjct: 877  PSISHEVEVYMIAQILRQELSLRSVTPWQRIDLLAIAIRPTSIEHRATFRLLAFIGDAFM 936

Query: 1089 KYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPG 1148
            KY  +  LFL +   HEG LS+ +   + ++ L        L  ++     + +RWV P 
Sbjct: 937  KYLFAMQLFLHHHLWHEGLLSSLKQRNLSDAGLAHAIHQSGLGKFLISKHLNGKRWVPPL 996

Query: 1149 QLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAY 1208
               + P   E                               R +G+ T+AD  +A++GA 
Sbjct: 997  VSGIEPASNEA----------------------------RQRSIGAATLADMTKAVVGAA 1028

Query: 1209 YVGGGL--IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFT 1266
            +  GGL   AA   + +  + +    SL D   ++    + V     I D+E  +GY FT
Sbjct: 1029 FTDGGLNQAAACASVMFPKLKSWNASSLHDGTYSKTRPENAVAS-TAIVDMEELLGYTFT 1087

Query: 1267 VKFLLQEAITHAS 1279
             K L  E++TH S
Sbjct: 1088 DKSLAVESMTHPS 1100


>gi|302819689|ref|XP_002991514.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii]
 gi|300140716|gb|EFJ07436.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii]
          Length = 569

 Score =  177 bits (450), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 123/342 (35%), Positives = 181/342 (52%), Gaps = 52/342 (15%)

Query: 783  AKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSW 842
            AK +QEL  NG F +L   ++ SGS +         LW+ S  +LLLP+       D + 
Sbjct: 77   AKAYQELLLNGAFNRL---ARCSGSPQ-------EILWNKSQAFLLLPVH------DDND 120

Query: 843  RINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSV 902
             I+W+ ++  A V   +          C+N    SSP          H  D++  ANG V
Sbjct: 121  SIDWTSVHATAGVYRTL----------CSN-FSPSSPIDGDGVGEKTHA-DMLCTANGYV 168

Query: 903  DAKNLKDMVVLAIHTGRIYSIVEIVNNSSAES--PFDGNTDDDSKTFVNYFSEKYGIVLI 960
             +  L+DMVV  +H GR++ +  ++ N +A S  P  G T      +++Y+ +KY   L 
Sbjct: 169  HSSALQDMVVATVHNGRLFCVTGVLENFTAASLLPKRGFT------YIDYYKDKYQRTLR 222

Query: 961  HPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPIS 1020
             P QPLL+ K +H  HNLL+   +  GS          ++ +  V +PPEL + +++   
Sbjct: 223  LPDQPLLKAKPTHAFHNLLIRPKEDHGS----------RQEESFVELPPELCLCLEIKSG 272

Query: 1021 VVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERL 1080
            +++SLY +PS + +  S + A QLR  +        IP++ ILEA+T+  C E FS E L
Sbjct: 273  LIRSLYFVPSFLHQFTSTVCAIQLRSPLWPW-----IPAAKILEAITSKKCHEEFSYESL 327

Query: 1081 ELLGDSVLKYAVSCHLFLTYPKKHEGQLSARR-SWAVCNSTL 1121
            ELLGDS LKY V+  LFL Y KKHEGQLSARR ++A  NS L
Sbjct: 328  ELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRNTYATKNSIL 369



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 111/198 (56%), Gaps = 15/198 (7%)

Query: 1245 RSYVPRINE---IKDIESKIGYEFTVKFLLQEAITHASVQE-FYCYQNLYKHLQHCSTLL 1300
            R+ +P I++   ++ +E K+ Y+F  + LL EAITHAS      CYQ       H S  L
Sbjct: 375  RACLPLIHQNASLESLEHKLQYKFQNRSLLVEAITHASQPNCLLCYQ-------HGSVEL 427

Query: 1301 LSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
              +I ++V++  K          + APK LGDLLESI GA+ +DT  +L+++WR+  P+L
Sbjct: 428  DCEIRKFVQNV-KEKPDASCFEDLSAPKVLGDLLESITGAIFVDTNFDLEKLWRVVLPLL 486

Query: 1361 SPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERS 1420
            SP+VTP  L   P+R L+ELC   G  V      + E    E+R+   +  LV   QE+ 
Sbjct: 487  SPLVTPGTLRFHPVRILMELCARQGMKVS---FFRTEATTTEVRVTFGEESLVETSQEKP 543

Query: 1421 RKAAKGKAASQLLKKLEV 1438
            RK+AK  AA ++L  L++
Sbjct: 544  RKSAKIDAALKMLASLQL 561


>gi|350289218|gb|EGZ70443.1| P-loop containing nucleoside triphosphate hydrolase protein
           [Neurospora tetrasperma FGSC 2509]
          Length = 1547

 Score =  176 bits (446), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 178/665 (26%), Positives = 293/665 (44%), Gaps = 77/665 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQL++FE + ++N I  ++TG+GKT +AV+ I     A +     K I FL PTV L 
Sbjct: 77  RAYQLEMFEASLKQNIIVAMDTGSGKTQVAVLRI-----ARELEQRDKRIWFLTPTVALA 131

Query: 107 HQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQILLDALRKAFL 164
            QQ+ V++      +     G  GVD W  Q  W   +    ++V T QIL DA   +F+
Sbjct: 132 RQQHQVLQSQIPSVKAIMLCGQDGVDSWSEQAVWDAVLLNVRIVVSTYQILFDANAHSFV 191

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVSSAM 220
            LD +  IVIDE H+ +G+HP  ++M E Y  +       P + G+TASP+    ++   
Sbjct: 192 RLDSLSLIVIDEAHNCSGSHPIARLMTEAYLPAKKAGLPVPSILGLTASPLKSNNLAD-- 249

Query: 221 DCEGQISELESTLDS--QVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG-----SDLKGK 273
                I +LE  LD+  +  TI  + E+   V   +     Y  SK  G     +DL  +
Sbjct: 250 -----IEKLEQVLDAVCRTPTIH-REELLAHVNRPEMLVVSYGDSKGPGTEPTPTDLMTR 303

Query: 274 LEVSWSKFDAS------LSKLQGSQ--LNCYKDMDDKHKTL-RKQLSDYHAKILYCLDEL 324
              ++ + D S      L K Q ++      + M  K  TL +K+L   + + L    E+
Sbjct: 304 FLEAYHRLDISKDPDVLLLKAQRTERAREKLRQMVTKKDTLAQKELRGVYNRALLVRREI 363

Query: 325 GLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF 384
           G   A   +   +  +L   E  E   Q       ++ E L  I   +P   K  +    
Sbjct: 364 GPWAADYYLTRTVSHMLAELERGEPPAQHR-----YIGEALRSI--PIPAISKEPIQ--- 413

Query: 385 DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL---- 440
                     +S K+  LL++  S  +    + I+FV+  +   +V   +   P      
Sbjct: 414 ----------LSPKVQTLLKVLASHQQDP--VGIVFVKERVMVSIVTHIISTHPLTKDRY 461

Query: 441 ---THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
              + +  A + G   +   +T K     LE FR G+ NLL AT V+EEG+ VP C+ VI
Sbjct: 462 RTASMIGTASVPGKARNHMDMTKKEDMTSLEGFRRGRFNLLVATSVLEEGIDVPICNLVI 521

Query: 498 RFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPE 557
            FD P  + S+IQ RGRAR+ +S   LM++  + +      ++ R  +   +  + ++ E
Sbjct: 522 CFDEPSNIKSFIQRRGRAREVSSTLYLMVQNASGESAMDWHNLERLMKERYEDEMRQNAE 581

Query: 558 ACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPS-DKYYTPKPIFKYK--SA 614
              L            VESTGA +T     + ++ +C  + S  +Y   +P F  +  S 
Sbjct: 582 LELLDDPRIGSYPVLEVESTGARMTIRDVRSHLNHFCAKVSSRSRYLQKEPYFVIRQVSP 641

Query: 615 EEAYECELT-LPSNAPFQTIVGPTSR---------NKNLSKQLVCLEACEKLHQVGALND 664
           + A     T L +       + P  R         ++ L+      +A + L+  G +N+
Sbjct: 642 DPASPGRRTLLQATVHLPASLAPDLRRHESLWTWTSEKLAIMDASFQAYKALYNAGLVNE 701

Query: 665 HLLPS 669
           +LLP+
Sbjct: 702 NLLPT 706



 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 148/342 (43%), Gaps = 43/342 (12%)

Query: 1009 PELLVRVD-VPISVVKSLYLLPSVMQRLE-SLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            P   +R+D  P    +   ++P+  + +E SL+ A  +   + C   + ++P  LI  AL
Sbjct: 943  PSTQIRMDNFPAVFAQVGAVIPAFTRAVEMSLVAADLMYNRLGCLQLD-NLP--LITTAL 999

Query: 1067 TTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
             + G     + ERLE +GD++LK+         +P  HE  LS  +   V N  L +   
Sbjct: 1000 ISSGSRGPTNYERLEFIGDTILKFCACLTASALFPNHHERLLSQWKDKLVNNVRLCRASR 1059

Query: 1127 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD 1186
            D  L  YI  SA   ++W        RP   E  +D ++ P   +               
Sbjct: 1060 DFGLDEYIIHSAAS-KKW--------RPKFVEDYLDEMKSPESAET-------------- 1096

Query: 1187 MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMK-WLGIDADLEVSLVDDCITRASLR 1245
               R M SK +AD  E+LIGA Y+ GG+  AL  +   L      +    +  ++RA L 
Sbjct: 1097 ---RQMSSKMVADVVESLIGAAYMCGGMSKALECVALLLPTPKSSQFKWQEISLSRAQLF 1153

Query: 1246 SYVPR----INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLL 1301
             + P+      +++ +E  + Y F  K LL EA+TH S       ++ Y+ L+     +L
Sbjct: 1154 EFAPKDAILSKQLEPLEKAMSYTFHKKSLLIEAMTHPSCAGLSTNESCYELLEFLGDAIL 1213

Query: 1302 SQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLI 1343
              I   VK         ++GP+  A   + + L S+V A ++
Sbjct: 1214 DVIV--VKRL-----MAETGPNELAHNDMHEHLSSVVTADIM 1248


>gi|325091272|gb|EGC44582.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H88]
          Length = 1432

 Score =  176 bits (446), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 176/660 (26%), Positives = 284/660 (43%), Gaps = 103/660 (15%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQL++FE AK  N IAVL+T             D A    S    ++  FL  +V L
Sbjct: 93  PREYQLELFEKAKAANIIAVLDTA------------DRA----SGNPPRISFFLVDSVTL 136

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V+QQ  V++ + D  ++++ GA   D W  + W+K  +KN ++V T ++L   L ++F+ 
Sbjct: 137 VYQQAAVLKANIDQNIDKFSGAMQTDLWSKETWEKHFSKNMIIVCTAEVLYQCLLRSFIR 196

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHK---SDNKPKVFGMTASPVVRKGVSSAMDC 222
           ++ +  ++ DE HHA   HPY +I+K+FY +   +  +PK+FGMTASP     V + +D 
Sbjct: 197 MEHINLLIFDEAHHAKKEHPYARIVKDFYLRRPETQKRPKIFGMTASP-----VDAKVDV 251

Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD 282
                 LE+ LDSQ+ T  +   +   +    E    YD                  K D
Sbjct: 252 AKAAKNLETLLDSQIATASNLDALRQAIARPTEQIWVYD------------------KLD 293

Query: 283 ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV-- 340
           A+       + + YK M  +   +R +L       L     LG  C+       LE    
Sbjct: 294 ATF------ETDLYKCMQSRFGKIR-ELERIFFYALEASSMLGRWCSDWLWTFALEAAEL 346

Query: 341 --LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDL-GYIST 397
             L+ +      + SS      L+E + ++      A ++  +  FD    VD   ++S+
Sbjct: 347 PKLEGRVSKSYMQSSSRDHSKGLDEAIKLLRE----AGQLIRNHTFD--TPVDCPAHLSS 400

Query: 398 KLHELL-QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG---STT 453
           K+  L  +L L F + T   CI+FV++   A+++     ++    H+    L G      
Sbjct: 401 KVRLLRHELSLYFERHTDTKCIVFVQQRHTARLLAELFSRIG-TRHMQTGILIGVQHDGI 459

Query: 454 SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
                + + Q   L  FR G++N L    V  E  H      V R +L    +S IQ   
Sbjct: 460 GGANFSFRQQFLTLLKFRKGELNCL----VRPELDHDSYAHMVERDNLIH--ASCIQEAQ 513

Query: 514 RARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYI 573
           RA     +F   L             IIR   S  D  ++ D E  +         KS+ 
Sbjct: 514 RAEHIMRRFCESLPEDR---------IIRG--SSDDLGMNLDKERYY---------KSFT 553

Query: 574 VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTI 633
           V STGA++T  SS+ ++  Y   L  +K  +P+  +  +  + A+ CE  LP  +PF+ +
Sbjct: 554 VHSTGATLTYPSSLVVLAHYASSLQYEKETSPQVNYFIERIDGAFVCEAILPEKSPFRGL 613

Query: 634 VGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTK 693
            G  S  K  ++Q    E C  L + G L+DH             +SK ++ LP     K
Sbjct: 614 TGKPSARKLHARQSAAFETCLMLRKNGILDDH------------FVSKYHKRLPAMRNAK 661



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 184/496 (37%), Gaps = 134/496 (27%)

Query: 1031 VMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT----------------TLGCCES 1074
            ++ R+ES +++ +      C      I + L LEALT                  G  ++
Sbjct: 952  IISRIESYLISLE-----ACDKLQLSIETHLALEALTKDSDNTEEHRKEQIHFQRGMGKN 1006

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
            +  ERLE LGD  LK A S  LF   P   E     +R   +CN  L       KL  ++
Sbjct: 1007 Y--ERLEFLGDCFLKMATSISLFAMNPDNDEFDFHVKRMCLICNQNLFNTAVRLKLYEFV 1064

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
            R   F  R W   G + L               L GK  ++  +           + +G 
Sbjct: 1065 RTQGFSRRNWYPEG-IKL---------------LQGKAKSESAQ---------NKQALGD 1099

Query: 1195 KTIADCAEALIGAYYVGGGLIAAL-YMMKWLGIDADLEVSLVDDC---ITRASLRSY--- 1247
            KTIAD  EALIGA  + GG        +K + +  D +   V D    I   SL SY   
Sbjct: 1100 KTIADICEALIGASLLSGGKACRFDTAVKAVTVFVDSDNHRVSDWNSYIDLYSLPSYQIV 1159

Query: 1248 ---VPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY----CYQN------------ 1288
                 +++  K I +++GY FT   LL+ A THAS    +    CYQ             
Sbjct: 1160 QADAGQLDLAKQIGNRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMV 1219

Query: 1289 --------------------------------------LYKHLQHCSTLLLSQITEYVKS 1310
                                                  L+KHL + S  L  QIT Y + 
Sbjct: 1220 CVEYLYHHYPDRDPQWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEE 1279

Query: 1311 FPKP-GETTDSGPSMKA----PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT 1365
                  E+ DS  +       PK L D+LE+ +GA+ +D+  + + V   F+  L     
Sbjct: 1280 IEVAVAESADSPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYF- 1338

Query: 1366 PDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHA-ELRLQLKDVL---LVGEGQERSR 1421
                      E + + D+     K     + +MV + E R+    ++    V +G   S 
Sbjct: 1339 ----------EDMSIYDAFAN--KHPTAGEVQMVDSTETRIYAAVIVHDKFVAQGIASSV 1386

Query: 1422 KAAKGKAASQLLKKLE 1437
            + AK KA+   L KLE
Sbjct: 1387 RYAKTKASEAALAKLE 1402


>gi|402225633|gb|EJU05694.1| hypothetical protein DACRYDRAFT_113750 [Dacryopinax sp. DJM-731
           SS1]
          Length = 1596

 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 133/223 (59%), Gaps = 9/223 (4%)

Query: 45  IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNG-FKKLIIFLAPTV 103
           IPR YQ ++F  A++ N IAV++TG GKT+IA+ LIK +   +++ G  +K+++F+ P V
Sbjct: 14  IPRQYQTEIFTQAQQNNVIAVMDTGTGKTLIAITLIKWMTTRLRAPGEARKVVVFIVPKV 73

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            LV QQ + I   T  E   YYGA  VD W  + W KE ++ DVLVMTP++L D L  A 
Sbjct: 74  PLVEQQREAIAQQTSLEARGYYGALDVDYWKREQWAKEFDEADVLVMTPRVLYDLLSHAH 133

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSAMD 221
            S+D +  ++ DE HH   N+ Y +IM++ YHK D   +PKVFGMTASP+    V +  D
Sbjct: 134 WSVDRISLLIFDEAHHCRKNNDYNQIMRDHYHKCDPARRPKVFGMTASPIW--NVKNPAD 191

Query: 222 CEGQISELESTLDSQVFTIEDKT-EMEVFVPSAKESCRFYDQS 263
               + ELE  ++S+V  + D   E+    P  KE    YD +
Sbjct: 192 S---LKELERNMNSRVLAVRDNIDELHKHAPKPKEIEVIYDST 231



 Score =  127 bits (319), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 134/493 (27%), Positives = 207/493 (41%), Gaps = 74/493 (15%)

Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL-THLTVAYLTGSTTS-- 454
           +L E+LQ   +   + Q  CIIF E+     V+   ++ + +L T +   ++TG   S  
Sbjct: 360 RLAEILQQCYTADPACQ--CIIFAEQRQVVMVLSWILRHISYLRTMIRPTFITGHGGSTH 417

Query: 455 --------VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
                   V  ++ K Q+  +  FR GK NLL AT V EEG+    C+ VIRFD  KT+ 
Sbjct: 418 RSMRDLEDVQGMSVKEQQVAVRHFRDGKANLLVATSVAEEGLDFQPCNLVIRFDALKTMV 477

Query: 507 SYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSR-------DPEAC 559
           SY QSRGRARQ  S +I+M  R    + +K    +R+E  + +    R       D +A 
Sbjct: 478 SYAQSRGRARQKASTYIIM-RRSVPTEADKYTQFMRAEPQLKEAYQKRAIQDGEIDDDAG 536

Query: 560 FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK-YYTPKPIF-----KYKS 613
              + + ++ +     STGA +T  +++ LI R C +LP +      KP++        S
Sbjct: 537 EDVSESDLRLREVYTTSTGAKLTYGNAIALISRLCAVLPIEPGLPVLKPMYGLIDGASPS 596

Query: 614 AEEAYEC------ELTLPSNAPFQT----IVGPTSRNKNLSKQLVCLEACEKLHQVGALN 663
            + AY         L LPS  P         GP  +NK  +K+ V  +A   LHQ+G  +
Sbjct: 597 PDPAYPLGFGFSNTLILPSALPLPRDQLHRQGPYRQNKREAKRAVAFDAARSLHQLGCFD 656

Query: 664 DHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKF 723
           D+LLP ++E ++   +    E           ++  +T I A    W E  G  L  Y  
Sbjct: 657 DYLLP-LQENNDREGVDADGEQFKPLDV---DDVFESTAIDAWGDPWQE--GQSLFCYPL 710

Query: 724 NFACSIVTEIYSGFVLLIESELD--NDVGNFELELYLVSKTVKATVSSSGQVHLDADQMS 781
            F   IV    +G V     +L+  N+       +  + + V    +S  Q       M 
Sbjct: 711 QFETCIV----AGLVTCAVFDLNDVNEPTGIATNIPRLDRVVVLEFNSEDQRKEQLQLME 766

Query: 782 KAKCFQELF------FNGLFGKLFVKSKSSGSREFF-LKRETNSLWSPSYMYLLLPLEIV 834
           K   F + +      F G     FVK    G  +F  ++R   S           PL + 
Sbjct: 767 KYTIFAKEWAISRRPFEGKLSCFFVKLTQDGLPDFIAMQRALES-----------PLSV- 814

Query: 835 NTFGDGSWRINWS 847
                  WR NW+
Sbjct: 815 ------DWRRNWT 821



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 177/442 (40%), Gaps = 128/442 (28%)

Query: 1017 VPISVVKSLYL----------LPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            +P S +KS+ L           PS+++++ +++ A   R  IN      + P     EAL
Sbjct: 930  IPSSFIKSVSLEDELFRVVETFPSLLRQITAVVRA---RAVINLLKLPPY-PVPRFAEAL 985

Query: 1067 TTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
               G    ++ +RLE LGD+ LK A S H+F  YP +HEGQLS  +  +V N+ L   G 
Sbjct: 986  VIPGVVPKYNYDRLEFLGDTFLKLATSIHIFNKYPHRHEGQLSVLKDGSVRNTYLR--GK 1043

Query: 1127 DRKLQGY---IRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKF-FTQDTKVVVG 1182
              +L  Y   + D    P+RW+ P               T    LDG   + + T +   
Sbjct: 1044 AYRLGIYHYNVTDKVCGPKRWMPPV--------------TTHTTLDGVIPYVKQTSL--- 1086

Query: 1183 KPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI-------DADLEVSLV 1235
                        + ++DC E+L+GA Y+ GGL   L     +G+        +       
Sbjct: 1087 -----------RRCLSDCVESLLGAGYLCGGLDGLLRTGTAIGLCFGGMEPWSHRYTGDS 1135

Query: 1236 DDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYC--YQNL---- 1289
              C    SLR           ++  +GYEF    LL EA+TH +  +     YQ L    
Sbjct: 1136 PSCGASTSLRL----------LQDTLGYEFRNPLLLLEALTHPTFPDSQTPSYQRLEFLG 1185

Query: 1290 -----------------------------------------------YKHLQHCSTLLLS 1302
                                                           YKH+ + +  L  
Sbjct: 1186 DAVVDVFIVDYLFHKFPACTAHKLTWMKHLIVCNSLLGAVAIRELGLYKHMLYMARRLDL 1245

Query: 1303 QITEYVKSFPKP---GETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLD----EVWRI 1355
            +IT  V+   +P    E  +       PKAL D+LE+++GAVL+DT  +L      + R+
Sbjct: 1246 EITLSVRVL-EPLSYQELAEKWWEFDPPKALNDVLEAVLGAVLVDTNYDLQLCRPVLERL 1304

Query: 1356 FKPILSPIVTPDKLELPPLREL 1377
            FK IL P+  PD + L P+ EL
Sbjct: 1305 FKDIL-PLAHPD-VPLHPVMEL 1324


>gi|115292171|emb|CAK32533.1| putative dicer-like protein [Mucor circinelloides]
          Length = 1529

 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/229 (44%), Positives = 137/229 (59%), Gaps = 18/229 (7%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDI----AQAIKSNG--FKKLIIFL 99
           PR YQ ++F+ A   NTIAVL+TGAGKT+IAVMLIK +     + +++N    +K+  FL
Sbjct: 39  PREYQYEIFKKAVSENTIAVLDTGAGKTLIAVMLIKHMLALEREKLQANRDYRRKVTFFL 98

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
              VHLV QQ  VIR + D +V+E  G   VD W +  W +  + ND+ V+T QI LD L
Sbjct: 99  VDRVHLVFQQASVIRANCDAQVKELCGDMNVDAWKADTWTEIWDNNDICVLTAQIFLDNL 158

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-SDN-------KPKVFGMTASPV 211
           R  FL+LD V  +V DECHHA+  HP+  IM EFYH+  DN       KPK+FGMTASP+
Sbjct: 159 RSGFLTLDRVNIMVFDECHHASKGHPFNLIMIEFYHRIYDNPVNQALDKPKIFGMTASPI 218

Query: 212 VRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY 260
                +S+      IS LE++L S V+T +   E+   V    E+  FY
Sbjct: 219 ----HTSSKKVLESISTLETSLQSIVYTAKSTQELASAVKKPFETELFY 263



 Score =  152 bits (384), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 178/354 (50%), Gaps = 55/354 (15%)

Query: 399 LHELLQLFLSFGKSTQVLC-IIFVERIIAAKVVERFVKKVP-FLTHLTVAYLTG-STTSV 455
           L + L+  L+   + Q  C IIFV+R   A  ++  ++ +  F   +    L G    S 
Sbjct: 394 LVDCLKDILANDANKQGFCGIIFVDRRHTAVAIKILIESISVFKEDIRCDVLIGHGVKSG 453

Query: 456 DALTPKV--QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
             L  K   Q EV+  FR G++NLL AT+V EEG+ +  C+YVIRFDL KTV +YIQSRG
Sbjct: 454 GDLQMKYTKQNEVIAKFRAGELNLLIATNVAEEGLDIQACNYVIRFDLFKTVIAYIQSRG 513

Query: 514 RARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTAL----SRDPEACFLKAC----- 564
           RAR+ +S++ILML R NLK  + L +++R+E  + D        R+P   F  A      
Sbjct: 514 RARRKDSKYILMLNRQNLKDMSLLRNVVRAEEMMKDYCRMLPKDRNPAVMFDDASGSPGT 573

Query: 565 ----TYVK--------TKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYK 612
                Y+K          ++ +ESTGA +T  +++ LI+ YC  LPSD +   KP+++Y+
Sbjct: 574 EYHPEYIKQGLSDKYLQDAFCIESTGALLTRSNAIALIYHYCATLPSDNFCNFKPVYEYE 633

Query: 613 -------SAEE-------------------AYECELTLPSNAPFQTIVGPTSRNKNLSKQ 646
                  S EE                    + C LTLP NA  Q       R K+ +K 
Sbjct: 634 DLTNYGLSLEEIEALDLPSINPTTVAGKKNIFGCTLTLPINARIQQFRA-YDRAKDDAKA 692

Query: 647 LVCLEACEKLHQVGALNDHLLPSVEEPSE--NNLISKKNESLPGAGTTKRKELH 698
            V L+AC  L++ G ++ HL+P  +       +L  +K+++    G+  R+ L+
Sbjct: 693 RVSLQACVALYKAGDIDSHLVPKSKTQRRVLMDLAEEKDDNGKLIGSRGRENLY 746



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 126/523 (24%), Positives = 217/523 (41%), Gaps = 121/523 (23%)

Query: 946  TFVNYFSEKYGIV--LIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQM 1003
            TF +Y+ ++  +   +    QPL+++ +   P N   +F    GS    K     ++P+ 
Sbjct: 955  TFKDYYEDQEFLSKKITDMAQPLIQVHRV--PKN--QSFRQVRGSSMMKKRD---REPES 1007

Query: 1004 HVH-MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLI 1062
             VH + PEL ++  +  SV ++L L+P +M  +++++L    ++ +    R   +    +
Sbjct: 1008 VVHWLVPELCLQYPISASVYQTLQLVPDIMMHIDAVLLMHDAKKALGLSGR---MKDPYM 1064

Query: 1063 LEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
            LEA T          +RLE LGDSVLK+  S ++F+T P  +E +L+  R   + N+ L 
Sbjct: 1065 LEAFTASSAGLEKDYQRLEFLGDSVLKFITSTYVFVTLPISNEFELTESRMRMISNTALF 1124

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
            K     +L  YI      PRR+        RP    C  D+ E+                
Sbjct: 1125 KSAIQLRLYEYICSQNL-PRRFY-------RPPNYLCKDDSAEMIKS------------- 1163

Query: 1183 KPCDMGHRWMGSKTIADCAEALIGAYYVG---------GGLIAALYMMKWLGID------ 1227
                + +  +  KT+AD  E+ +GA Y+            L  AL+  + L +       
Sbjct: 1164 ----LTYHKLSDKTLADVVESTLGASYLSCLGDKKQGDQALNEALHTTQRLLVPMQKMEQ 1219

Query: 1228 -ADLEVSLVDDCITRA-SLRSYVPRINE---IKDIESKIGYEFTVKFLLQEAITHASV-- 1280
             +D +    D+   +   + +Y P  ++   IK +   +GYEF  + L+ EA+THASV  
Sbjct: 1220 WSDFQTIYRDERDNKQLKMAAYDPLFDQRIDIKKVSRILGYEFQNEALIAEALTHASVTN 1279

Query: 1281 QEFYCYQN--------------------------------------------------LY 1290
                CYQ                                                   L+
Sbjct: 1280 SSVPCYQRLEFLGDAVLDFCVTNYLFEKYHTAPPGTLHDLRKSSVNNDILSVLCIQLGLH 1339

Query: 1291 KHLQHCSTLLLSQITEY----VKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTK 1346
             H++H ST   S + ++    V S  + GE      +   PK L D++ES++GAV +D  
Sbjct: 1340 VHIRHFSTTFPSAVKQFQELVVASQDEKGE---YWLNFNPPKVLSDVVESLIGAVFVDAG 1396

Query: 1347 LNLDEVW----RIFKPILSPIVTPDKLELPPLRELIELCDSLG 1385
             NLD V     R+ KP+L   ++ + ++  PL +L  +    G
Sbjct: 1397 FNLDPVLGLFDRLLKPLLDDHISIEAMQQHPLGKLKCMVQEFG 1439


>gi|134081603|emb|CAK46537.1| unnamed protein product [Aspergillus niger]
          Length = 1352

 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 159/604 (26%), Positives = 270/604 (44%), Gaps = 63/604 (10%)

Query: 94  KLIIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMT 151
           KLI FL PTV L  QQ+  +  +              V+ W  Q  W   + +  V+V T
Sbjct: 47  KLIWFLTPTVALCLQQFKFLSDNIPAVRARTLTSLDKVELWTEQPVWDAILKEMQVVVST 106

Query: 152 PQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKVFG 205
             +L DA+   F+ +  +  ++ DE HH    HP  KIM++FYH +  +      PK+ G
Sbjct: 107 HAVLADAMSHGFVKITQLGLMIFDEAHHCMRRHPANKIMQDFYHPALERHGAEAVPKILG 166

Query: 206 MTASPVVRKGVSSAMDCEGQISEL---ESTLDSQVFTIEDKTEME--VFVPSAKESCRFY 260
           +TASPVVR      +  E  +  +     T  S++ T   +  ++  +F P   +     
Sbjct: 167 LTASPVVRSNRQELLKIESNLDAVCKTPRTHRSELMTHTHRPHLQQILFTPVLLD----- 221

Query: 261 DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLN---CYKDMDDKHKTLRKQLSDYHAKI 317
                   DL+          D  + KL+ S L+     K ++        QL  +  + 
Sbjct: 222 --------DLQD---------DPYIKKLRKSPLDGRALQKVLESGKTYCNDQLKRFATRS 264

Query: 318 LYCLDELGLICAYEAVKICLEKV-LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLAD 376
           L+  +ELG   A   +   +E++  +A    +    +  +  Y L+     I S LP+ +
Sbjct: 265 LHIFEELGEWAADYFIHASIEQLKARAGNSADTMGWTDEEKAYLLD-----IVSKLPIPN 319

Query: 377 KIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436
                    +S   D   IS+K   LL+ FL          +IF ++     V+E+ +  
Sbjct: 320 -----IDLTHSDP-DRIPISSKFRSLLE-FLDTKGEPNFSGLIFAKQRATVSVMEKLLSI 372

Query: 437 VPFLTHLT-----VAYLTGSTTSV--DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMH 489
            P   H       V +  G +  V  + L  ++Q++ L  FR G+ NL+ ATDV+EEG+ 
Sbjct: 373 HPVTKHRFRCASFVGWSGGGSKDVLGELLDARMQRDTLSEFRTGQKNLIIATDVLEEGID 432

Query: 490 VPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR-NKLFDIIRSERSVT 548
           +  CS V+ FD P  + S++Q RGRAR   S + +M    +     +K  D+ ++     
Sbjct: 433 ISACSVVVCFDKPPNLKSFVQRRGRARHRQSTYAIMFATDDESSALSKWEDLEQAMIEAY 492

Query: 549 DTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPI 608
           +    R  EA  L+A      +   V+STGA +T D++V  ++ +C +LP   Y + +P 
Sbjct: 493 EDDERRLREAWALEAINEEVVERLEVQSTGAVLTADTAVAHLNHFCAVLPRQPYASNEPE 552

Query: 609 FKY-KSAEEAYECELTLPS--NAPFQTIVGPT-SRNKNLSKQLVCLEACEKLHQVGALND 664
           F Y K   +     +TLPS  +   + I G    + +  +++    +A ++L++ G L+D
Sbjct: 553 FSYEKDDADLLRGTVTLPSCVHPGVRRIQGQRWWQTERAARKEAAFQAYKRLYEFGLLSD 612

Query: 665 HLLP 668
           HLLP
Sbjct: 613 HLLP 616



 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 120/274 (43%), Gaps = 55/274 (20%)

Query: 1031 VMQRLESLMLASQLREEINCHSRNFHIPS-SLILEALTTLGCCESFSMERLELLGDSVLK 1089
            ++ RLE+ ++A++L E I    R+    S   I+ A+T        + +R E  GDSVLK
Sbjct: 870  ILDRLEATLVATRLCETI---LRDLEFSSIRHIITAITAPSAQSLTNYQRYEFFGDSVLK 926

Query: 1090 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAP-- 1147
            + VSC LF  +P  HEG LS  R   V NS L +   D  L  +I +  F PR+W AP  
Sbjct: 927  FTVSCQLFFQHPNWHEGYLSEGRDEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLI 986

Query: 1148 -GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
              ++SL P                                   R M +K +AD  EALIG
Sbjct: 987  SEKISLTP---------------------------------KQRTMSTKVLADVVEALIG 1013

Query: 1207 AYYVGGGLIAALYMMKWLGIDADLE------VSLVDDCITRASLRSYVPRINEIKDIESK 1260
            A Y+ GG  AA   +     + +LE        +  D +T  +L            + + 
Sbjct: 1014 ASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVTNHTLND--------DHLMAH 1065

Query: 1261 IGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQ 1294
            IGY FT K LL E++TH S Q F      Y+ L+
Sbjct: 1066 IGYTFTNKSLLVESLTHPSCQ-FDTTTQSYQRLE 1098


>gi|239610437|gb|EEQ87424.1| dicer-like protein 2 [Ajellomyces dermatitidis ER-3]
          Length = 1509

 Score =  173 bits (439), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 179/714 (25%), Positives = 312/714 (43%), Gaps = 121/714 (16%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIA-----------------------VMLI 80
           F PR YQL++ E + R N I  ++TG+GKT +                           I
Sbjct: 45  FKPRAYQLEMLEASLRENIIIAMDTGSGKTQVVPTHELEIDAQVLNYFSDLTILWIFRAI 104

Query: 81  KDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH-TDFEVEEYYGAKGVDEWDSQ-CW 138
             I   +++    KL+ FLAPTV L  QQ+  I    + ++     G+  V+ W ++  W
Sbjct: 105 LRIRHELETCAAHKLVWFLAPTVALADQQHKSISQQLSAYQTRLLLGSDNVNYWSTKNIW 164

Query: 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-- 196
              +    ++V TPQ+LLDA+   F+++  +  +V DE HH   N     +M+ FYH+  
Sbjct: 165 DDILLNIRIVVSTPQVLLDAMTHGFVTMSRIALLVFDEAHHCAENEAPNILMQRFYHEQL 224

Query: 197 -----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVP 251
                +++ P + G+TASP+ +      M       ++E  L+S+  T     E      
Sbjct: 225 QRTGTANDLPHILGLTASPITKVDPKYLM-------KIEHNLNSRCETPRIHRE------ 271

Query: 252 SAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKL-------QGSQLNCYKDMDD--- 301
              E  R+  + + C  + +  + V  S    SL ++       Q   +   K   D   
Sbjct: 272 ---ELMRYVHRPELCTVNFQVDVSVG-SDILQSLHRIVETVDIEQDPWIKRLKQQKDRRS 327

Query: 302 ---------KHKT--------LRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV--LK 342
                    K KT        LR+Q ++ H       + LG   A   +   L+++   +
Sbjct: 328 QNTLLNAMVKRKTFAISQMTKLRRQATNIH-------ENLGAWAADAFISEVLKRLGAKR 380

Query: 343 AQEECEIYRQSSLQCKYFLEEVLHVIGSALPL-ADKIFLDFGFDYSKAVDLGYISTKLHE 401
           A++  +       + + F+ E L    S LP+   K + D   D         +S+K + 
Sbjct: 381 AKQSADHLGTLEREQENFVFETL----SQLPIYPSKQYWDSEPDL--------VSSKANL 428

Query: 402 LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTV--------AYLTGSTT 453
           L+ L L    ++    IIF ++     ++   + K P L  L V         Y   ++T
Sbjct: 429 LIDL-LEKEHTSDFTGIIFAQQRSTVTMLAHLISKHPRLKDLIVPGAFLGDAGYADRTST 487

Query: 454 SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
             +    K Q+  ++  R GK NLL AT V+EEG+ V  C  V+ FD    + S+IQ RG
Sbjct: 488 ITELHNTKTQRGSIDDLRSGKKNLLVATSVLEEGIDVSACHLVVCFDAISNLRSFIQRRG 547

Query: 514 RARQHNSQFILML---ERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTK 570
           RAR+  S+F++ L   ++   K+ NK+ D+++S        L        ++     K  
Sbjct: 548 RARKERSKFVIFLNGDDKSQEKKWNKMEDVMKSMYEEDMRRLENIWAIENIEEEADEKEN 607

Query: 571 SYI-VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA--YECELTLPS- 626
            Y+ +ESTGA +T +++   +  +C  L  D +   +P+F Y  +E       ++ LP+ 
Sbjct: 608 EYLRIESTGALLTFENARPHLEHFCATLQCD-FTDTRPVFLYSESEPGGMVTGKVILPNV 666

Query: 627 -NAPFQTIVGPT-SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPS 674
            +  F+ I G    R + ++++    +A  KL++ G +ND+LLP     VE+P+
Sbjct: 667 LDPKFRVIRGSKWWRRERMAQRDAAFQAYVKLYREGLVNDNLLPIHWMPVEDPA 720



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 113/266 (42%), Gaps = 53/266 (19%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDS 1086
            L PS+M ++E  ++A QL + I      F    SL++ A++     E+ + +R+E LGDS
Sbjct: 977  LTPSIMHKVEIYLIAEQLNKTI-LKPVAF-TDLSLVVTAISASVAREATNYQRIEFLGDS 1034

Query: 1087 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVA 1146
            +LK+  +  L       HEG LS  +   V N  L     +  L  +I    F   +W  
Sbjct: 1035 ILKFHTTLQLSAANLVWHEGLLSRAKDNVVSNKRLSYAAVETGLDKFILVDVFTGAKW-- 1092

Query: 1147 PGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
                  RP   +  +++ E                G P     R M +KT+AD  EAL+G
Sbjct: 1093 ------RPRYNKVHLESEE---------------QGIP----QREMTTKTLADVVEALLG 1127

Query: 1207 AYYVGGG-------LIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP------RINE 1253
            A  + GG       L   L  ++W+  D  +            +L + VP      R + 
Sbjct: 1128 AATIEGGETKTEKCLEIFLPEIRWMPFDDRIN-----------ALYNSVPEAYENIRTSW 1176

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHAS 1279
             ++IES +GY F  K  L +A TH S
Sbjct: 1177 FQEIESLLGYSFNKKVFLVQAFTHPS 1202


>gi|261195592|ref|XP_002624200.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081]
 gi|239588072|gb|EEQ70715.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081]
          Length = 1509

 Score =  173 bits (439), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 179/714 (25%), Positives = 312/714 (43%), Gaps = 121/714 (16%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIA-----------------------VMLI 80
           F PR YQL++ E + R N I  ++TG+GKT +                           I
Sbjct: 45  FKPRAYQLEMLEASLRENIIIAMDTGSGKTQVVPTHELEIDAQVLNYFSDLTILWIFRAI 104

Query: 81  KDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH-TDFEVEEYYGAKGVDEWDSQ-CW 138
             I   +++    KL+ FLAPTV L  QQ+  I    + ++     G+  V+ W ++  W
Sbjct: 105 LRIRHELETCAAHKLVWFLAPTVALADQQHKSISQQLSAYQTRLLLGSDNVNYWSTKNIW 164

Query: 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-- 196
              +    ++V TPQ+LLDA+   F+++  +  +V DE HH   N     +M+ FYH+  
Sbjct: 165 DDILLNIRIVVSTPQVLLDAMTHGFVTMSRIALLVFDEAHHCAENEAPNILMQRFYHEQL 224

Query: 197 -----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVP 251
                +++ P + G+TASP+ +      M       ++E  L+S+  T     E      
Sbjct: 225 QRTGTANDLPHILGLTASPITKVDPKYLM-------KIEHNLNSRCETPRIHRE------ 271

Query: 252 SAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKL-------QGSQLNCYKDMDD--- 301
              E  R+  + + C  + +  + V  S    SL ++       Q   +   K   D   
Sbjct: 272 ---ELMRYVHRPELCTVNFQVDVSVG-SDILQSLHRIVETVDIEQDPWIKRLKQQKDRRS 327

Query: 302 ---------KHKT--------LRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV--LK 342
                    K KT        LR+Q ++ H       + LG   A   +   L+++   +
Sbjct: 328 QNTLLNAMVKRKTFAISQMTKLRRQATNIH-------ENLGAWAADAFISEVLKRLGAKR 380

Query: 343 AQEECEIYRQSSLQCKYFLEEVLHVIGSALPL-ADKIFLDFGFDYSKAVDLGYISTKLHE 401
           A++  +       + + F+ E L    S LP+   K + D   D         +S+K + 
Sbjct: 381 AKQSADHLGTLEREQENFVFETL----SQLPIYPSKQYWDSEPDL--------VSSKANL 428

Query: 402 LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTV--------AYLTGSTT 453
           L+ L L    ++    IIF ++     ++   + K P L  L V         Y   ++T
Sbjct: 429 LIDL-LEKEHTSDFTGIIFAQQRSTVTMLAHLISKHPRLKDLIVPGAFLGDAGYADRTST 487

Query: 454 SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
             +    K Q+  ++  R GK NLL AT V+EEG+ V  C  V+ FD    + S+IQ RG
Sbjct: 488 ITELHNTKTQRGSIDDLRSGKKNLLVATSVLEEGIDVSACHLVVCFDAISNLRSFIQRRG 547

Query: 514 RARQHNSQFILML---ERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTK 570
           RAR+  S+F++ L   ++   K+ NK+ D+++S        L        ++     K  
Sbjct: 548 RARKERSKFVIFLNGDDKSQEKKWNKMEDVMKSMYEEDMRRLENIWAIENIEEEADEKEN 607

Query: 571 SYI-VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA--YECELTLPS- 626
            Y+ +ESTGA +T +++   +  +C  L  D +   +P+F Y  +E       ++ LP+ 
Sbjct: 608 EYLRIESTGALLTFENARPHLEHFCATLQCD-FTDTRPVFLYSESEPGGMVTGKVILPNV 666

Query: 627 -NAPFQTIVGPT-SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPS 674
            +  F+ I G    R + ++++    +A  KL++ G +ND+LLP     VE+P+
Sbjct: 667 LDPKFRVIRGSKWWRRERMAQRDAAFQAYVKLYREGLVNDNLLPIHWMPVEDPA 720



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 113/266 (42%), Gaps = 53/266 (19%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDS 1086
            L PS+M ++E  ++A QL + I      F    SL++ A++     E+ + +R+E LGDS
Sbjct: 977  LTPSIMHKVEIYLIAEQLNKTI-LKPVAF-TDLSLVVTAISASVAREATNYQRIEFLGDS 1034

Query: 1087 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVA 1146
            +LK+  +  L       HEG LS  +   V N  L     +  L  +I    F   +W  
Sbjct: 1035 ILKFHTTLQLSAANLVWHEGLLSRAKDNVVSNKRLSYAAVETGLDKFILVDVFTGAKW-- 1092

Query: 1147 PGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
                  RP   +  +++ E                G P     R M +KT+AD  EAL+G
Sbjct: 1093 ------RPRYNKVHLESEE---------------QGIP----QREMTTKTLADVVEALLG 1127

Query: 1207 AYYVGGG-------LIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP------RINE 1253
            A  + GG       L   L  ++W+  D  +            +L + VP      R + 
Sbjct: 1128 AATIEGGETKTEKCLEIFLPEIRWMPFDDRIN-----------ALYNSVPEAYENIRTSW 1176

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHAS 1279
             ++IES +GY F  K  L +A TH S
Sbjct: 1177 FQEIESLLGYSFNKKVFLVQAFTHPS 1202


>gi|451996502|gb|EMD88969.1| hypothetical protein COCHEDRAFT_1143131 [Cochliobolus
           heterostrophus C5]
          Length = 1426

 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 185/678 (27%), Positives = 320/678 (47%), Gaps = 77/678 (11%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F  R YQ ++   + + N I V++TG+GKT IA+   +   +  K +   KL+ FLAPTV
Sbjct: 25  FHLRGYQAEMIAESMKANIIVVMDTGSGKTHIAIERARAELEMCKPD---KLVWFLAPTV 81

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ-CWQKEINKN-DVLVMTPQILLDALRK 161
            L  QQY+V + +           + V+ W +Q  W      N  +++ T QILLDAL  
Sbjct: 82  ALCEQQYEVFQANLPGYGHLLLCGRDVELWTTQSVWNNVFQHNVRIVISTHQILLDALTH 141

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKSDNK---PKVFGMTASPVVRKGV 216
            F+SL  +  ++ DE HH T  HP  KIM +FY    +D+    PKV G++ASPV+R   
Sbjct: 142 GFMSLQRLALLIFDEAHHCTLKHPAHKIMSDFYTPQLTDSTFALPKVLGLSASPVMR--- 198

Query: 217 SSAMDCEGQISELESTLDSQVFTIE-DKTEM--EVFVPSAKESCRFYDQSKFCGSDLKGK 273
            +A + +G +  +E  L + V T +  ++E+   V  P   +     D S    S L   
Sbjct: 199 -AAANKQG-LEAIERNLQATVRTPKLYRSELLRSVHRPELIQVNYTRDPSTGSPSVLLFA 256

Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELG-LICAYEA 332
           L+ +   +D        S L   ++  +  + L+K    + ++  YC D+L  L+   EA
Sbjct: 257 LKNACVNYDLMDDPYVISLLEQQRNGYNVSRQLQKL---WDSRKTYCYDQLKQLVSKAEA 313

Query: 333 VKICLEKVLKAQEECEIYR--------QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF 384
           +    +++  +  E  +Y+             C    +E  H++        KIF     
Sbjct: 314 MA---QELGNSAMEHYVYKCVNDFKNLVHDQSCDLSTDEKRHLL--------KIFQHLPT 362

Query: 385 DYSKAVD---LGYISTKLHELLQLFLSFG-KSTQVLCIIFVE-RIIAAKVVERFVKKVPF 439
            ++  +    L  +S K++ L+ + ++    ++    I+FVE R+  A + E        
Sbjct: 363 RHTTGISSPILESLSHKVNVLIDIIVAEAVTNSNFTSIVFVEQRVWVASLAEILTSHPRT 422

Query: 440 LTHLTVAYLTGSTTS-------VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPN 492
              L V    G + S        +   PK Q+ VL+ F+ G +NL+ AT V+EEG+ +P+
Sbjct: 423 KALLRVGTFVGMSQSSQHKSSVFNYADPKNQQTVLDDFKAGIINLVLATSVLEEGIDIPS 482

Query: 493 CSYVIRFDLPKTVSSYIQSRGRARQHNSQ-FILMLERGNL----------KQRNKLFDII 541
           C  V+ F+ PKT+  ++Q RGRARQ  S+ +IL+ + G++           Q  K ++  
Sbjct: 483 CHLVVCFEAPKTLKGFVQRRGRARQQRSRYYILVPDMGDVYSATSWQYLEAQMKKAYE-- 540

Query: 542 RSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
             ER    TAL R  E C  +      ++   +E+TGA +T D+++  ++ +C  L S  
Sbjct: 541 DHER---QTAL-RSEEECIEE----YDSRCLRIETTGALLTLDNAMQHLYHFCARLSSGT 592

Query: 602 YYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSR---NKNLSKQLVCLEACEKLHQ 658
           Y   +P F + +       + +LP +         +SR    + ++++    EA + L+ 
Sbjct: 593 YVDARPEFDFTNINGQISAKASLPISVDLTVRTANSSRTWKTERMAQKDAAFEAYKTLYF 652

Query: 659 VGALNDHLLPSVEEPSEN 676
            G +N++LLP +EE  E+
Sbjct: 653 AGLVNENLLPVIEEDGEH 670



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 124/272 (45%), Gaps = 41/272 (15%)

Query: 1016 DVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNF---HIPSSLILEALTTLGCC 1072
            ++P S      L PS+  +LE+ M+A+ LR  I   S +    H+P  ++L ALT     
Sbjct: 911  NLPASYAILASLFPSITHKLETYMVANTLRTTI-LQSVDIDVSHLP--ILLLALTPSATE 967

Query: 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQG 1132
               + +RLE LGD +LK+  S HL  T+ +  EG L+ ++   V N  L +    + L G
Sbjct: 968  GEENYQRLEFLGDCILKFITSLHLMATHLRMPEGMLTGKKGKLVSNGYLARAALAKGLDG 1027

Query: 1133 YIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWM 1192
            +I    F   +W        +P                ++ +Q   + +  P     R  
Sbjct: 1028 FILYKRFTGAKW--------KP----------------RYVSQ--MLSITNPPTKQER-- 1059

Query: 1193 GSKTIADCAEALIGAYYVGGGLIAALYMMK-WLGIDADLEVSLVDDCITRASLR--SYVP 1249
             SK IAD  E+LIGA YV GG   A   +K  L ++  + +   +D +  A+    S V 
Sbjct: 1060 SSKLIADVIESLIGASYVVGGFSKAFACVKALLPLENWMPIPQANDTLYNAAPEQDSVVG 1119

Query: 1250 RINEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             I     +E+ +G+ F  K LL EA+TH + +
Sbjct: 1120 AIT----VENLVGHAFNNKALLLEALTHPTFR 1147


>gi|116196272|ref|XP_001223948.1| hypothetical protein CHGG_04734 [Chaetomium globosum CBS 148.51]
 gi|88180647|gb|EAQ88115.1| hypothetical protein CHGG_04734 [Chaetomium globosum CBS 148.51]
          Length = 1476

 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 206/781 (26%), Positives = 335/781 (42%), Gaps = 112/781 (14%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL----IIFLAP 101
           PR YQL++FE AK +NTIAVL+TG+GKT+IA +L++   Q    +  K+L      FL  
Sbjct: 135 PRDYQLELFERAKTQNTIAVLDTGSGKTLIAALLLRWTIQNELEDRSKRLPKRIAFFLVD 194

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
            V LV QQ+ V+  + D+ +E++ G   V++     W K  ++N  +V T +IL   L  
Sbjct: 195 KVALVFQQHAVLACNLDYPLEKFCG-DMVEDVTQDFWHKTFDENMAIVCTAEILYQCLTH 253

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
           +++ +D                                      MTASPV      + +D
Sbjct: 254 SYIRMDQ------------------------------------AMTASPV-----DAQID 272

Query: 222 CE-GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280
            +  +  ELE  L SQ+ T+ D T +                     S  K K EV+  +
Sbjct: 273 PKIARSPELEGLLHSQIATVADPTALH-------------------NSSTKLKREVT-VE 312

Query: 281 FDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA--YEAVKICLE 338
           +   L + +       KD+  +H+  +K      A       ELG  CA  Y  +    E
Sbjct: 313 YGKCLPEFETGLNRALKDLVGEHRLFQKPF----AFTATAASELGPWCADRYWQLFFRGE 368

Query: 339 KVLK--AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS 396
           +V+K  A+ E EI R+S+     + +E+   +      A ++     F  S + DL  +S
Sbjct: 369 EVVKLEAKTEREILRKSA-----YSQEIAAQVNKVRE-AHRLVGQHEF-ASPSSDL--LS 419

Query: 397 TKLHELLQLFLS--FGKSTQVLCIIFV-ERIIAAKVVERFVKKVPFLTHLTVAYLTGS-- 451
           +K+  LL++      G   +  CI+FV +R +A+ + +   +    +  L    L G   
Sbjct: 420 SKVVILLRILRGEFRGVDHKRRCIVFVRQRNVASLLTDLLQQPEMRIPGLEPGILVGGGR 479

Query: 452 -TTSVDALTPKVQKEVLE--SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
              S D      + +VL    F+ G++N +FAT V EEG+ +P+C+ +IR+DL  T+  Y
Sbjct: 480 PEASYDNAKVTYRDQVLTIIKFKKGELNCIFATSVAEEGLDIPDCNVIIRYDLNNTLIQY 539

Query: 509 IQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD--TALSRDPEAC------- 559
           IQSRGRARQ  S +I M+E  N +   K+     SE ++     AL  D +         
Sbjct: 540 IQSRGRARQEGSIYIHMVESENEEHVKKVCQNQESEDALRKFCEALPADRKLTGNNFDME 599

Query: 560 -FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAY 618
            FL+       + Y V  TGA +    S+  +  +   LP          +   S    Y
Sbjct: 600 YFLRKEK--DQRQYTVPETGARLNYKQSLICLAAFVASLPHPPEVNLTAGYLVLSVPGGY 657

Query: 619 ECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNL 678
           +CE+TLP ++P ++  G    +K ++K     E C  L +   L+ HL P+  +     L
Sbjct: 658 QCEVTLPESSPIRSATGKVYASKAVAKCSAAYEMCLMLIKGKYLDQHLRPTFTK----QL 713

Query: 679 ISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFV 738
            + +N  L  A ++K+KE +       L    GE     L A     A       +S  +
Sbjct: 714 PAMRNARL--AVSSKKKEQYKMRIKPELWSVLGEPTE--LFAMALTLADPTALARHSSPL 769

Query: 739 LLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKL 798
           LL+  +    + +F L       +    V   G+V LD +Q+          F  +F K 
Sbjct: 770 LLLTRQPIPQIASFPLYFGKNRSSAVHCVPVPGRVELDDNQIQGLVAVTLAIFKDIFSKE 829

Query: 799 F 799
           +
Sbjct: 830 Y 830



 Score = 97.1 bits (240), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 182/468 (38%), Gaps = 107/468 (22%)

Query: 1012 LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT---- 1067
            +V  ++P+ +V   Y  P++M R++S ++A +      C   N ++   L LEA T    
Sbjct: 962  VVEAELPVDLVAMAYNFPAIMHRIDSNLVALEA-----CKMLNLNVRPDLALEAFTKDSD 1016

Query: 1068 ----------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1117
                      +       + ERLE LGD  LK A +  +F   P K E +    R   +C
Sbjct: 1017 NSGEHDAEQISFQSGMGNNYERLEFLGDCFLKMATTISIFTLIPDKAEFEYHVERMLLIC 1076

Query: 1118 NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDT 1177
            N  L     + KL+ +IR  AFD R W   G L+L+                        
Sbjct: 1077 NRNLFNNALEVKLEEHIRSMAFDRRSWYPEG-LTLKK----------------------- 1112

Query: 1178 KVVVGKPCDMGHRW-MGSKTIADCAEALIGAYYVGG------GLIAALYMMKWLGIDADL 1230
                GK  D+  +  +  KTIAD  EALIGA Y+            A+  +  +  D + 
Sbjct: 1113 ----GKRKDLTRQHVLADKTIADVCEALIGAAYLTAQEQTPPNFDLAIRAVTVMVKDKNH 1168

Query: 1231 EVSLVDDCITRASLRSY--VP----RINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY 1284
             ++   D     S  ++   P    +++     E+++GY FT   LL+ A  H +    Y
Sbjct: 1169 TMTSYSDYYAAYSPPAWQTAPCNSTQLDMAARFEARMGYAFTHPRLLRSAFQHPTYPSVY 1228

Query: 1285 CYQNLYKHLQHCSTLLLSQIT-EYV------------------KSFPKPGETTDSGPSM- 1324
                 Y+ L+     LL   + E++                   + P PG+      +  
Sbjct: 1229 EKLPSYQRLEFLGDALLDMASVEFLFHRFPGADPQSKTPCNRHATTPSPGDLPAESFARD 1288

Query: 1325 ------KAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELI 1378
                  + PK L D++E+ VGAV +D++ +   V   F   + P             E +
Sbjct: 1289 FWVRCSRPPKCLPDVVEAYVGAVFVDSRYDFARVRAFFADHVRPFF-----------EDM 1337

Query: 1379 ELCDSLGYFVKENCT-----LKGEMVHAELRLQLKD---VLLVGEGQE 1418
             L D+     K   T     ++G M  AE RL +KD   V+  G G E
Sbjct: 1338 RLYDAFAN--KHPVTFLAGIMQGRMRCAEWRLLVKDLPPVVGAGAGTE 1383


>gi|302661784|ref|XP_003022555.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517]
 gi|291186507|gb|EFE41937.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517]
          Length = 1468

 Score =  170 bits (431), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 176/709 (24%), Positives = 304/709 (42%), Gaps = 102/709 (14%)

Query: 31  AVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN 90
           +++G   +  SI   PR YQ ++ E + ++N I  ++TG+GKT IA++ I+     ++  
Sbjct: 44  SLEGLEDALGSIR--PRGYQREMLEASIKQNIIVAMDTGSGKTQIAILRIR---HELERC 98

Query: 91  GFKKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQ-CWQKEINKNDVL 148
              KL+ FLAP V L  QQY  I      ++ +   GA  ++ W +Q  W   +    ++
Sbjct: 99  SNDKLVWFLAPRVPLAEQQYRAISEQLPAYQTKILTGADNLERWSTQQIWDAFLLNTRIV 158

Query: 149 VMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-------KSDNKP 201
           V TPQILLD L   F++L  +  +V DE HH     P  KIM+ FYH       ++++ P
Sbjct: 159 VSTPQILLDVLSNGFITLRRIALLVFDEAHHCVKASPENKIMRNFYHARIDQLSETNDLP 218

Query: 202 KVFGMTASP---VVRKGVSSAMDCE--GQISELESTLDS--QVFTIEDKTEME-VFVPSA 253
            + G+TASP   ++   +S   +C    +  +LE  LD+  +   I  +  M+ V +P  
Sbjct: 219 SILGLTASPTSKLIEDSLSRQCECSLLMESRQLEQNLDAFCKTPAIHREEMMQYVHIPEL 278

Query: 254 KESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLR------ 307
           ++    Y +      ++K K        D             YK   D   T R      
Sbjct: 279 RKIS--YQKDSIIPHNMKVKFLHMLDDIDIESDPF----FQRYKGKTDSKSTERFLRALA 332

Query: 308 ------KQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE---------CEIYR- 351
                  QL     K+ +   ELG    + +     E   + +EE          E  R 
Sbjct: 333 RKTPGLDQLKRCFTKVSHMYGELG---HWASSAFISEIYRRTREERAKLVDHSWSEWDRD 389

Query: 352 QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGK 411
            SS  C   LE V+ ++G                ++   D   +S K+  L+ L LS   
Sbjct: 390 DSSFMCNA-LEPVVAIMGERC-------------WNSTPD--AVSQKVEHLVDL-LSSEL 432

Query: 412 STQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS-------VDALTPKVQK 464
           +     IIFVE+   A ++   + + P L H+   Y  G++          +   P   K
Sbjct: 433 TGSSRGIIFVEQRATAVMLSHLISRYPELAHIKSDYFLGNSAFSARKADLTELSKPGDMK 492

Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFIL 524
             ++  + GK NLL AT V+EEG+ V  C  V+ FD PK + S++Q RGRAR+ +S+F++
Sbjct: 493 NSIDDLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPPKQLRSFVQRRGRARKKSSKFVI 552

Query: 525 ML---ERGNLKQRNKLFDIIR----SERSVTDTALSRDPEACFLKACTYVKTKSY----- 572
                +    K    + DI++    S +   D     D E         +++  Y     
Sbjct: 553 FYAEDDTATYKDWEAMEDIMKERYLSNKEFIDRLREEDDEEEVEYESLRIESTGYGVTPG 612

Query: 573 ---------IVESTGASVTTDSSVNLIHRYCEMLPSDKYYT-PKPIFKYKSAEEAYECEL 622
                    I  +  A +T +++   +  +C  +P +   T P  I      ++    ++
Sbjct: 613 LLLWDCLLTIYYTVRALLTLENARAHLSHFCSTIPCEFTDTQPDFIISKTGIKDMLTAKV 672

Query: 623 TLPS--NAPFQTIVGPTS-RNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
            LP+  +  F+   G  + + + ++K+    +A  +L++   +NDHL+P
Sbjct: 673 LLPTVLDLQFREFEGIQAWKREKMAKRDAAFQAYLQLYKASLVNDHLMP 721



 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 114/276 (41%), Gaps = 51/276 (18%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+   K    +PS++  +   +LA +L + I       +I   L+L A+T     E  +
Sbjct: 974  LPVGFAKFALFIPSLIHTIGRYLLAEELSKTILSPIGFQNI--QLVLTAITATSAREDTN 1031

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +RLE LGDS LK   S  L   +P  HEG LS ++   V NS L K   D  L  +I  
Sbjct: 1032 YQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKDSIVSNSRLWKAAVDTGLDQFILT 1091

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
            + F   +W                      PL    +T +     GK  +   R + +KT
Sbjct: 1092 TCFTGAKW---------------------RPLYNSTYTNN----AGKIGEKSTRKLSTKT 1126

Query: 1197 IADCAEALIGAYYVGGG-------LIAALYMMKWLGIDADLEV------SLVDDCITRAS 1243
            +AD  E+LIG   + GG       L   L  + WL     +E+         DDC     
Sbjct: 1127 LADVVESLIGVAIIDGGENKVLRCLELFLPEINWLPSGERIEILYDSAPDFNDDC----- 1181

Query: 1244 LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
                 PR + +  IE  I Y FT K LL  +++H S
Sbjct: 1182 -----PR-DILSKIEPLIDYSFTKKALLAASLSHPS 1211


>gi|326485005|gb|EGE09015.1| dicer-like protein 2 [Trichophyton equinum CBS 127.97]
          Length = 1417

 Score =  169 bits (429), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 173/702 (24%), Positives = 298/702 (42%), Gaps = 116/702 (16%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAV--------------------------MLI 80
           R YQ+++ + + ++N I  ++TG+GKT ++V                            I
Sbjct: 58  RGYQIEMLDASIKQNIIVAMDTGSGKTQMSVNYTHAETLSYDHLNNQASSNTVGHIYSAI 117

Query: 81  KDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CW 138
             I   ++     KL+ FLAP V L  QQY  I      ++ +   GA  ++ W +Q  W
Sbjct: 118 LRIRHELERCSNDKLVWFLAPKVPLAEQQYRAISQQLPAYQTKILTGADNLERWSTQKIW 177

Query: 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--- 195
              +    ++V TPQILLD L   F++L  +  +V DE HH     P  KIMK FYH   
Sbjct: 178 DAFLLNTRIVVSTPQILLDVLSNGFITLRRIALLVFDEAHHCVKASPENKIMKNFYHARI 237

Query: 196 ----KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVP 251
               ++++ P + G+TASP  +                  T DS    +E + ++E  + 
Sbjct: 238 DQLSETNDLPSILGLTASPTSKL-----------------TEDSLSLLMESR-QLEQNLH 279

Query: 252 SAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMD---------DK 302
           +  ++  F+ +       +   L++S+ K       ++   L+   D+D          K
Sbjct: 280 ACCKTPSFHREEMMQYVHIPELLKISYQKDSTIPHNMEMKFLSMLNDIDIESDPFFQRYK 339

Query: 303 HKTLRKQLSDY---HAKILYCLDELGLICAYEAVKICLEKVLKAQEE----------CEI 349
            KT RK +  +     +   CLD+L         K C  +V     E           EI
Sbjct: 340 GKTDRKSIERFMRARDRKTPCLDQL---------KRCFTRVSHIYGELGHWASSTFISEI 390

Query: 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG---------YISTKLH 400
           YR++  +    +++      S     D  FL        A+ +G          +S K+ 
Sbjct: 391 YRRTREKRAKLIDQSW----SEWDRDDSSFLCNALKPVVAI-IGERCWNSTPDAVSQKVE 445

Query: 401 ELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALT- 459
            L+ L  S    T    IIFVE+   A ++   +   P L H+   Y  G++   D    
Sbjct: 446 HLVDLLASELTGTS-RGIIFVEQRATAVMLSHLISHYPELAHIMPDYFLGNSAFSDRKAD 504

Query: 460 ------PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
                 P   K  ++  + GK NLL AT V+EEG+ V  C  V+ FD PK + S++Q RG
Sbjct: 505 ITELSKPGDMKNSIDDLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPPKQLRSFVQRRG 564

Query: 514 RARQHNSQFILMLERGNL---KQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTK 570
           RAR+ +S+F++     +    K    + DI++         + R            V+ +
Sbjct: 565 RARKQSSKFVIFYAEDDTATHKDWEAMEDIMKERYFNNKEFIDR---LREEDDEEDVEYE 621

Query: 571 SYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYT-PKPIFKYKSAEEAYECELTLPS--N 627
           S  +ESTGA +T +++ + +  +C  LP +   T P  I      ++    ++ LP+  +
Sbjct: 622 SLRIESTGALLTLENARSHLSHFCSTLPCEFTDTQPDFIISNSGIKDMLTAKVLLPTVLD 681

Query: 628 APFQTIVGPTS-RNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
             F+   G  + + + ++K+    +A  +L++ G +NDHL+P
Sbjct: 682 LQFREFEGIQAWKREKMAKRDAAFQAYLQLYKAGLVNDHLMP 723



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 95/241 (39%), Gaps = 49/241 (20%)

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            S+  H   + I    ++    E  + +RLE LGDS LK   S  L   +P  HEG LS +
Sbjct: 956  SKPHHTARNCIPARQSSTSAREDTNYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKK 1015

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGK 1171
            +   V NS L K   D  L  +I  + F   +W        RP+      D         
Sbjct: 1016 KDSIVSNSRLWKAAVDTGLDQFILTTCFTGAKW--------RPLYNSTYADN-------- 1059

Query: 1172 FFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG-------LIAALYMMKWL 1224
                      GK  +   R + +KT+AD  E+LIGA  + GG       L   L  + W 
Sbjct: 1060 ---------AGKIGEKSTRELSTKTLADVVESLIGAAIIDGGENKVLRCLELFLPEINWQ 1110

Query: 1225 GIDADLEV------SLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHA 1278
                 +E+         DDC          PR + +  IE  I Y FT K LL  +++H 
Sbjct: 1111 PSGERIEILFDSAPDFNDDC----------PR-DIMSKIEPLIDYSFTKKALLATSLSHP 1159

Query: 1279 S 1279
            S
Sbjct: 1160 S 1160


>gi|350630584|gb|EHA18956.1| hypothetical protein ASPNIDRAFT_42773 [Aspergillus niger ATCC 1015]
          Length = 1498

 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 165/692 (23%), Positives = 300/692 (43%), Gaps = 118/692 (17%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQL++FE AK +NTIAVL+T            K++   ++     ++  FL  +V L
Sbjct: 117 PREYQLELFERAKVQNTIAVLDTE-----------KELNDRVEGKP-HRIAFFLVDSVTL 164

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            +QQ  V+R + D  V  ++GA G D W    W +   KN V+V T +IL   L  +++ 
Sbjct: 165 AYQQAAVLRNNLDQSVGHFFGAMGTDLWSKSVWDQHFQKNMVIVCTAEILNQCLLNSYIK 224

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCE 223
           +  +  ++ DE HH   +HPY +I+++ Y +     +P++FGMTASP+  KG     D  
Sbjct: 225 MSQINILIFDEAHHTKKDHPYARIIRDSYLEEVYSKRPRIFGMTASPIDTKG-----DIV 279

Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDA 283
            + + LE  LDS++ T  + + +   V                    +  +E  W     
Sbjct: 280 DEATRLEKLLDSRIATTSNMSLLRQVV--------------------RRPVERVW----- 314

Query: 284 SLSKL-QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLK 342
           S +KL Q    + YK ++D+   +   L            ELG  C+  A    L   + 
Sbjct: 315 SFNKLEQPFATSLYKHLEDRFGDM-ACLEGIFRFAWQASSELGRWCSDRAWARALADDVL 373

Query: 343 AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHEL 402
            + E  + + ++ +    + E  +     +  A +I   + F  S     G +S K+  L
Sbjct: 374 PKLEGSVRKTANSETSSNVPESAYKEILRITEASEIVKSYAF--SSPETFGQLSPKVQVL 431

Query: 403 L-QLFLSFGKSTQVLCIIFVERIIAAKVVERFVK--KVPFLT-HLTVAYLTGSTTSVDAL 458
             +L   FG+ T+  CI+F ++   A ++    +   +PFL   + +   +G    ++ +
Sbjct: 432 REELARYFGRQTETKCIVFTQKRYTALILAELFQTLDIPFLRPGVLIGVRSGDLAGMN-I 490

Query: 459 TPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518
           T + Q   L  FR G++N L  T +      +P    +I                     
Sbjct: 491 TFRQQFISLVKFRTGEINCLVNTHIC-----LPVYQLLI--------------------- 524

Query: 519 NSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTY---------VKT 569
              +  M+ERGNL+   +L ++  +E+ +  +     PE   L    +            
Sbjct: 525 --NYASMVERGNLEHEQRLLEVQDAEK-IMQSFCRTLPEDRLLYGFDHDLDTVLQKDEGN 581

Query: 570 KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAP 629
           +++ ++STGA +T  S+  ++ RY   L  +K ++ +  +       A+ CE+ LP  +P
Sbjct: 582 RTFRIKSTGAKLTYHSATAILARYASSLQYEKEFSAQVTYVVLPINGAFVCEVILPEKSP 641

Query: 630 FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL-------LPSV---------EEP 673
            + + G  +  K+++K+    + C  L +   L+DH        LP++         +  
Sbjct: 642 IRGLTGSPAMKKSIAKRSAAFDTCLLLRKNKLLDDHFNSIYHRRLPAMRNAKLAITSKRT 701

Query: 674 SENNLISK-----KNESLPGAGTTKRKELHGT 700
           S+ ++ISK     + + +P       KELHGT
Sbjct: 702 SQYDMISKPSLWGRKQGMPP------KELHGT 727



 Score = 90.5 bits (223), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 156/448 (34%), Gaps = 131/448 (29%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P S   S    P+++ R+++ +++ Q      C S NF +   L LEA T         
Sbjct: 967  IPASTAFSCLAFPAIISRIDAYLISLQ-----GCESLNFTVKLDLALEAFTKDSDNTDEH 1021

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G   ++  ERLE LGD  LK A S  LF   P   E      R   +CN  
Sbjct: 1022 RAQQIHVQRGMGRNY--ERLEFLGDCFLKMATSISLFTQNPDDDEFDYHVNRMCLICNKN 1079

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L     D+++  YIR   F    W   G L L               L GK  ++     
Sbjct: 1080 LFNAAVDKEIYKYIRSRGFSRHTWYPEG-LKL---------------LQGKDHSR----- 1118

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG----LIAALYMMKWLGIDADLEVSLVD 1236
              K        +  KTIAD  EALIGA  + GG       A+  +  L      +     
Sbjct: 1119 --KATTESKHALAEKTIADVCEALIGAALLSGGPDHRFDMAVKAVTTLVNSPSHKAERWK 1176

Query: 1237 DCITRASLRSYVPRINE------IKDIESKIGYEFTVKFLLQEAITHASVQEFY----CY 1286
            D I+  ++  Y  R  +       + +E K+ Y F    LL  A TH S    +    CY
Sbjct: 1177 DYISFYTIPKYQRRAADGAELYLSRKLEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCY 1236

Query: 1287 QN--------------------------------------------------LYKHLQHC 1296
            Q                                                   L+ HL++ 
Sbjct: 1237 QRLEFLGDSLIDMVCVEDLFARFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYF 1296

Query: 1297 STLLLSQITEYVKSFPKP-GET---------TDSGPSMKAPKALG-----------DLLE 1335
            S  L SQIT+Y +      GE+         T   P +  P AL            D++E
Sbjct: 1297 SAPLQSQITQYAEEIQTAEGESEGAVDYWTVTKDPPKVMTPSALRNTANVDGQCLPDMVE 1356

Query: 1336 SIVGAVLIDTKLNLDEVWRIFKPILSPI 1363
            + VGAV +D+  N + + R F+  + P 
Sbjct: 1357 AYVGAVFVDSDFNFEVIERFFRDYIKPF 1384


>gi|170591572|ref|XP_001900544.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
 gi|158592156|gb|EDP30758.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
          Length = 1856

 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 155/554 (27%), Positives = 259/554 (46%), Gaps = 63/554 (11%)

Query: 36  SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS---NGF 92
           +S  +   F PR YQ+++ + A +RN I  L TG+GKT IAV+LIK+    + +   NG 
Sbjct: 5   TSDVDKNFFTPRDYQVELLDKACKRNIIVPLGTGSGKTFIAVLLIKEYTTKLVTPWKNGG 64

Query: 93  KKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMT 151
           K+   FL   V LV QQ   I  HT   V + +G    D W     +   I  ++V V+T
Sbjct: 65  KR-AFFLVDKVSLVEQQAAHIEHHTTLNVGKMHGHLNQDIWSEPAKFDTFIALHEVTVLT 123

Query: 152 PQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEFYHKSD-NKPKVFGMTAS 209
            QI LD L   F ++     I+ DECHH  G+ HPY  IM  +   ++ ++P++ G+TAS
Sbjct: 124 AQIFLDLLDHGFFNMSNAAVIIFDECHHVLGSKHPYRLIMHRYGQLTEVDRPRILGLTAS 183

Query: 210 PVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE---SCRFYDQSKFC 266
            +  K   S +  E  + +LE  + S + T  D   +  +    KE    C  +    FC
Sbjct: 184 LISSKIPPSNL--EHLLEKLERIMHSSIETASDLVSISKYGARPKEYVIMCHDF----FC 237

Query: 267 GSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGL 326
            +    K  +S      +L  L+   L C +   +     RK + +  ++    L++LG 
Sbjct: 238 CTCETSKKVIS------TLESLRTFCLKCTEFHPEFDVDPRKPVLEAVSRTKSVLEQLGP 291

Query: 327 ICAYEAVKICLEKVLKAQ-------EECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
            CA++  ++  ++ LK Q       E+  I+ Q +     F++ +L V  + +    + F
Sbjct: 292 WCAWKLCQL-FQRQLKKQSGQGFLPEKQIIFLQMAYTTMRFIKRLLDVKVANI----RCF 346

Query: 380 LDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQ-------VLC-IIFVERIIAAKVVE 431
            D             +  +L  L ++   F  S           C IIFVE+   A V+ 
Sbjct: 347 SDVK---------PILPDRLARLFEILKFFSPSNMEKVDPDFTFCGIIFVEQRYVAYVLN 397

Query: 432 RFVKKVP---------FLTHLTVAYLTGSTTSVDALT-PKVQKEVLESFRGGKVNLLFAT 481
             ++ +           ++   + Y + +  + + +   K Q+ VL  FR   +NLL AT
Sbjct: 398 TLIRAISRWDNDKFGYLVSDFVIGYNSANIGTEETMALHKRQELVLRKFRQRHLNLLIAT 457

Query: 482 DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRN-KLFDI 540
            V+EEG+ V  C+ VIRFD P    +Y+QS+GRAR+  + + L++E  + +Q +  L D 
Sbjct: 458 SVLEEGVDVRQCNVVIRFDRPTDYRAYVQSKGRARKDGASYFLLVEERDREQCSCDLKDF 517

Query: 541 IRSERSVTDTALSR 554
           ++ ER + D  + R
Sbjct: 518 LQIER-IGDRVMYR 530



 Score =  100 bits (249), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 132/294 (44%), Gaps = 71/294 (24%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            +L+ALT     +  ++ERLE +GDS LKYAV+ +LF T P++HEG+LS  RS  V N  L
Sbjct: 1340 LLQALTLSNASDGINLERLETVGDSFLKYAVTDYLFHTNPEQHEGKLSFARSKEVSNCNL 1399

Query: 1122 HKLGTDRKLQGYIRDSAFDPRR-WVAP--------------------------------- 1147
            ++LG    L   I  S FDP   W+ P                                 
Sbjct: 1400 YRLGRKHNLPSLIIGSKFDPNDGWLPPCYAPTSDFKAPNTLDAEERDKFIENVLEGKAVE 1459

Query: 1148 GQLSLRPVPC--------------ECGVDTLEVPLDGKFFTQDTKVVVGKPCD-MGHRWM 1192
            GQ +++ +P                 G++T+E P +    + D + +   P + +  + +
Sbjct: 1460 GQETVK-IPTGWDEADRNGQVRRIANGIETIEFPKNMT-TSWDGEEITPLPYNLLTQQSL 1517

Query: 1193 GSKTIADCAEALIGAYYVGGGLIAALYMMKWLGID-----ADLEVSLVDDCITRASLRSY 1247
            G K+IAD  E+LIGA+ +  G  A L  MKWLG+        +E  L+    T       
Sbjct: 1518 GDKSIADAVESLIGAHLLELGPTATLKFMKWLGLKVLTZPVQMEPPLLRFIDTTDQPDKS 1577

Query: 1248 VPRINEI------KDIESKIGYEFTVKFLLQEAITHASVQEFY------CYQNL 1289
            + ++N++        +E  IGY F  +  L +A THAS   +Y      CYQ L
Sbjct: 1578 LRKLNDLWIQFQFSKLEDCIGYRFHDRAYLLQAFTHAS---YYKNRITGCYQRL 1628



 Score = 54.3 bits (129), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDS 1383
             PKA+GD+ ES+ GA+ +D+  +L+ VWR+F  ++   +       P  P+REL+E+   
Sbjct: 1733 VPKAMGDIFESVAGAIYLDSGRSLNTVWRVFYNLMKETINECCSNPPRSPIRELLEMEPE 1792

Query: 1384 LGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRI 1443
               F K    L+   V   + +Q K     G G  RS + AK  AA + L+ L   +K  
Sbjct: 1793 RARFSKLERILETGKVRVTVDIQGK-CRFTGMG--RSYRIAKCTAAKRALRYLRSLKKEK 1849

Query: 1444 SKGA 1447
             + A
Sbjct: 1850 ERVA 1853



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 11/150 (7%)

Query: 903  DAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 958
            DA   +D +V+  +  R     Y + EI++      P     DD   TF +YF +KY I+
Sbjct: 793  DAAKFQDAIVMPWYRDRDHPSFYYVAEIID----AKPSSKFPDDKFVTFNDYFIQKYNII 848

Query: 959  LIHPGQPLLRLKQSHNPHNLLV--NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVD 1016
            +    QPLL +  + +  NLL+  +++         KS  +    Q  + + PEL+    
Sbjct: 849  IYDQQQPLLDVDYTSSRLNLLMPRHWSRSKSRVTEEKSSESGGISQGQI-LVPELVDVHP 907

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLRE 1046
            +  S+   +  LP+++ R+ SL+LA +LRE
Sbjct: 908  IAASLWNVIAALPTLLYRINSLLLADELRE 937



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 10/109 (9%)

Query: 618 YECELTLPSNAPFQTIVGPTS--RNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSE 675
           Y  EL LP N+P +  +       +K L++  V LEAC +LH+   LND+LLP  ++   
Sbjct: 529 YRAELLLPINSPIKETIKLKKPLESKKLAQMAVALEACRRLHKRKELNDYLLPVGKDTIM 588

Query: 676 -NNLISKKNESLPG----AGTTKRKELHGTTPIRALSG---RWGEKCGV 716
              L    +E +P      G+ +R++L+     +AL     R GE+C +
Sbjct: 589 LTALDEDPDEFIPNMSYKVGSARRRQLYDKRMAKALHNAIPRAGEECYI 637


>gi|134079420|emb|CAK40801.1| unnamed protein product [Aspergillus niger]
          Length = 1379

 Score =  167 bits (424), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 183/706 (25%), Positives = 304/706 (43%), Gaps = 93/706 (13%)

Query: 25  SSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMI--------- 75
           +S  D+  D    +T+++    R YQL++   + +RN I V+ TG GKT +         
Sbjct: 2   TSSTDYHADSTPGTTSNMELRIREYQLEMLNESLKRNLIVVMPTGTGKTQVYDESYYVFD 61

Query: 76  ------AVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKG 129
                    +++ +A   K N   K +  L PTV L  QQY  I+  T F      GA+ 
Sbjct: 62  HMANRSNRAILRILADIDKGNS-DKFVWLLCPTVALSEQQY--IQYATVFLPS---GAE- 114

Query: 130 VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189
               D   W   ++   + V T Q+L DAL   F+ L  +  ++ DE HH   +H   KI
Sbjct: 115 ----DKAIWDNALSGIKIAVSTYQVLYDALSHGFVKLSQMSLLIFDEAHHCKKDHVANKI 170

Query: 190 MKEFYHKS-----DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKT 244
           M+  YHK       N PK+ G+TASP +   +SS    E  +  +  T       +   T
Sbjct: 171 MQVHYHKQHQSGVQNLPKILGLTASP-ILSDLSSLEIVESNLGSICKTPRQYYAQLLQFT 229

Query: 245 EMEVFVPSAKE------SCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKD 298
              + +P          S +     K CG  L  + EV       S SK++  QL   + 
Sbjct: 230 NRPLILPRLPTYTIPNCSVKAPILEKLCGI-LSSEDEV------PSSSKMKSKQLKHIRR 282

Query: 299 MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358
                +++ +              ELG+  A E ++   + ++  +E   +  + +    
Sbjct: 283 FMQTSESINQ--------------ELGIWAATEYMR---KSIMHFKESMRMGAEKTNISN 325

Query: 359 Y---FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQV 415
           Y   F  E+L  +G               D S A+    IS     LL   LS       
Sbjct: 326 YGKDFAMEILTRLGKLQ------------DCSPAIQPEEISPMCQCLLDE-LSKAYREGF 372

Query: 416 LCIIFVERIIAAKVVERFVKKVPFLTHL-TVAYLTGSTTSVDALTP-------KVQKEVL 467
             ++FV +      ++  ++  P  +HL T     G +T+  + T        + Q E L
Sbjct: 373 CGLVFVTQRATVLALKWLIENHPLTSHLFTCGTFIGMSTTQYSKTELGNLHDIRNQTETL 432

Query: 468 ESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE 527
           E FR G +NL+  TD +EEG+ VP C+ V+ F+   ++ S+IQ RGRAR+ NSQFI+++E
Sbjct: 433 EKFRQGSLNLIITTDALEEGIDVPACNTVLNFNCQLSLKSFIQRRGRARRENSQFIIIME 492

Query: 528 RGNLKQRNKLFDIIRSER-SVTDTALSRDPEACFLKACTYVKTK-SYIVESTGASVTTDS 585
             +  +  K  ++   E       A  R   A  L    Y +   S  ++ TGA +    
Sbjct: 493 DESGPRYLKRLEMEEIELVQKLQNAERRQIPANELDFDKYERISLSLDIDRTGAQLIMRE 552

Query: 586 SVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNA-PFQTIVGPTSRNKNL 643
           +V  ++ +C  LP+  Y + KP+F Y+      +   + LPSN  P       +     L
Sbjct: 553 AVGYLYNFCSKLPAQLYVSNKPLFTYERNNYGRFRAVVKLPSNLDPSLQSFSSSRSWSRL 612

Query: 644 --SKQLVCLEACEKLHQVGALNDHLLPS-VEEPSENNLISKKNESL 686
             +++   L+A + L+Q G +ND+L+P+ V +  E ++I + + S+
Sbjct: 613 KYAREDAALQAYKALYQAGLVNDYLVPTQVSDHLEGDIIFRSHYSI 658



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 104/253 (41%), Gaps = 31/253 (12%)

Query: 1029 PSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVL 1088
            PS+   +E  M+A  LR+E++  S        L+  A+         +   L  +GD+ +
Sbjct: 894  PSISHEVEVYMIAQILRQELSLRSVTPWQRIDLLAIAIRPTSIEHRATFRLLAFIGDAFM 953

Query: 1089 KYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPG 1148
            KY  +  LFL +   HEG LS+ +   + ++ L        L  ++     + +RWV P 
Sbjct: 954  KYLFAMQLFLHHHLWHEGLLSSLKQRNLSDAGLAHAIHQSGLGKFLISKHLNGKRWVPPL 1013

Query: 1149 QLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAY 1208
               + P   E                               R +G+ T+AD  +A++GA 
Sbjct: 1014 VSGIEPASNEA----------------------------RQRSIGAATLADMTKAVVGAA 1045

Query: 1209 YVGGGL--IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFT 1266
            +  GGL   AA   + +  + +    SL D   ++    + V     I D+E  +GY FT
Sbjct: 1046 FTDGGLNQAAACASVMFPKLKSWNASSLHDGTYSKTRPENAVAS-TAIVDMEELLGYTFT 1104

Query: 1267 VKFLLQEAITHAS 1279
             K L  E++TH S
Sbjct: 1105 DKSLAVESMTHPS 1117


>gi|242033789|ref|XP_002464289.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor]
 gi|241918143|gb|EER91287.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor]
          Length = 462

 Score =  167 bits (423), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 127/427 (29%), Positives = 196/427 (45%), Gaps = 84/427 (19%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            V  + + S   +PS+M R++ L+L+++L+ ++    + F+I +  ILEALTT  C E FS
Sbjct: 4    VSANTLFSFSFVPSIMYRIQCLLLSAKLKVQLGPRMQQFNITAMKILEALTTKECQEKFS 63

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
            +E LE LGDS LKY     LF  Y  + E  L++ R   V N  L +L    ++ GYIR 
Sbjct: 64   LESLETLGDSFLKYVTGQDLFSKYTYR-EDMLTSMRGEKVSNPALCQLACKSEIVGYIRG 122

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM---GHRWMG 1193
              F P++W  PG           G DT            + KV+     DM       + 
Sbjct: 123  ELFSPKKWTIPG----------LGYDT----------RGNNKVLFRTTNDMYSLDEIPIK 162

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1253
            SK IAD  EAL GAY    G +AA++ +K LG+D +L   +  + I       ++    +
Sbjct: 163  SKRIADTVEALTGAYLSACGELAAVHFIKSLGMDVELHSKMQVERIVSTKSEEFI----D 218

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHASVQ-----------EF------------------- 1283
            ++ +++ IGY F    LL EA+TH+S             EF                   
Sbjct: 219  VESLQTIIGYVFDDSSLLIEALTHSSYNTAGITTCNERLEFLGDAVLDYILTDYFYRKYY 278

Query: 1284 ------------------YCYQN------LYKHLQHCSTLLLSQITEYVKSFPKPGETTD 1319
                              +CY +      L+KH+ H S+  +  I +   S P  G +  
Sbjct: 279  PKCTPALLTNLRKASVNNWCYAHAAVKAGLHKHILHSSSKQM--IKDLESSGPFSGPSHG 336

Query: 1320 SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIE 1379
              P +  P+ L DL E+I GA+ +D+  + + VWR  + +L P+ TP+ + L P+ EL E
Sbjct: 337  WEPGIGLPEDLADLFEAIAGAIYVDSGNDKEAVWRAMRRLLVPLATPETILLDPVSELKE 396

Query: 1380 LCDSLGY 1386
            LC+   Y
Sbjct: 397  LCEHKNY 403


>gi|413933740|gb|AFW68291.1| hypothetical protein ZEAMMB73_565304 [Zea mays]
          Length = 462

 Score =  166 bits (421), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 135/484 (27%), Positives = 224/484 (46%), Gaps = 85/484 (17%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            V  + + S   +PS+M R++ L+L+++L+ ++    + F+I +  ILEALTT  C E FS
Sbjct: 4    VSANTLFSFSFVPSIMYRIQCLLLSAKLKIQLGPRMQQFNITAMKILEALTTKECQEKFS 63

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
            ME LE LGDS +KY    +LF  Y K  E  L++ R   V N  L +L    ++ GYIR 
Sbjct: 64   MESLETLGDSFIKYVTGQNLFNKY-KHREDMLTSMREEKVSNPALCQLACKSEIVGYIRG 122

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
              F+P++W  PG           G D+     + K F + T  +      +    + SK 
Sbjct: 123  ELFNPQKWTIPG----------FGYDSRG---NNKVFFRATNNMY----SLKKISIKSKR 165

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSL-VDDCITRASLRSYVPRINEIK 1255
            IAD  EAL GAY    G +AA++ +K LG+D +L   + V+  IT  S       + + +
Sbjct: 166  IADTVEALTGAYLSTCGELAAVHFIKALGMDVELHSKMQVERTITTKS-----EELIDAE 220

Query: 1256 DIESKIGYEFTVKFLLQEAITHAS-----------------------VQEFYCYQ----- 1287
             +++ + Y F    LL EA+TH+S                       +  +Y Y+     
Sbjct: 221  SLQTMLKYVFYDTSLLVEALTHSSYNITGITACNERLEFLGDAVLDYILTYYFYRKYPNC 280

Query: 1288 -------------------------NLYKHLQHCST-LLLSQITEYVKSFPKPGETTDSG 1321
                                      L+KH+ H S+  +++ +    +SF  P    ++G
Sbjct: 281  TPALLTNLRKASVNNCCYAHAAVKAGLHKHILHSSSKQMVNDLENSGRSFSGPSHGWEAG 340

Query: 1322 PSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELC 1381
             S+  P+ L DL E+I GA+ +D+  + + VW   + +L P+ TP  +E  P+ EL ELC
Sbjct: 341  ISL--PEDLADLFEAIAGAIYVDSGNDKEVVWSAIRRLLEPLATPGTMEPDPVSELKELC 398

Query: 1382 DSLGY----FVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
            +   Y    +     ++ G +     ++     +  G G  R++  A+  AA  LLKK++
Sbjct: 399  EHKHYPKPSYSPTRDSVAG-VTRVVAQVTAARTVYSGTGTGRNQDVAEVLAAKALLKKIK 457

Query: 1438 VCEK 1441
               +
Sbjct: 458  AAAR 461


>gi|356571230|ref|XP_003553782.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max]
          Length = 756

 Score =  166 bits (420), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 207/776 (26%), Positives = 321/776 (41%), Gaps = 142/776 (18%)

Query: 737  FVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKC-----FQELFF 791
             VL I SELD+++ +    L   S  VK         HL+  Q+S  K      FQ   F
Sbjct: 48   IVLAIRSELDSEIVD---TLSGTSFDVKRGKLLVNLRHLEPIQLSPEKVQSCRRFQTTLF 104

Query: 792  NGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINP 851
              L  +   K  +S S +F L        +P   +LLLP  + +     S  I+W    P
Sbjct: 105  RILLNRDVTKL-TSVSDDFSLGD------NPEIDFLLLPATVKHQRPSNSI-IDWK---P 153

Query: 852  CASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMV 911
              SV        F   + C+        C+   C         + + N SV +  L++ V
Sbjct: 154  VLSV-------PFSSESTCD--------CKDHACN--------VRIRNDSVCSCKLENCV 190

Query: 912  VLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDS-----KTFVNYFSEKYGIVLIHPGQPL 966
            V   H G IY    I+  +      +GN+  +       T+  +F +++GI L    Q L
Sbjct: 191  VYTPHNGSIY----IIYTTDGTKKLNGNSTLNQGLKGITTYKEHFKKRHGIELGFEHQSL 246

Query: 967  LRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKS 1024
            L  +      N L+        GK   S          V +PPE+   +  PIS+  + S
Sbjct: 247  LHGRNLFKVENYLLKTRQKTEKGKNMSS----------VDLPPEVCSVIMSPISIGTIYS 296

Query: 1025 LYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLG 1084
               +PS+M  LE L++A  L+  +  H     IP S +L+A+T  GC E++  + LE LG
Sbjct: 297  FSFIPSIMHWLEGLLVAFNLKRMLLDHFTPNDIPISKVLQAITAKGCEEAYDYDYLETLG 356

Query: 1085 DSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRW 1144
            DS LKY VS  LF T     EG LS +R   + N  L K G  R L G+IR   FDP++W
Sbjct: 357  DSYLKYIVSQQLFKTNQNDREGALSDKRKNIISNDVLFKYGCTRPLPGFIRKDKFDPKQW 416

Query: 1145 VAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEAL 1204
              PG  S         +  L+  LD    +  T+V V K      R +    IAD  EAL
Sbjct: 417  DVPGDKS-------NSILLLKQKLD----SSRTRVYVRKT-----REIDLGIIADVVEAL 460

Query: 1205 IGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP-RINEIKDIESKIGY 1263
            IGA+       AAL  + W+GI+ D  +   ++      +    P  + + K ++S++ Y
Sbjct: 461  IGAFISTEDEKAALSFINWIGINVDTNIMPYEN---ERHISIIAPEELVKAKLLKSRLNY 517

Query: 1264 EFTVKFLLQEAITHASVQE---FYCYQNL----------------YKHLQH--------- 1295
             F   +LL EA+TH+S +      CY+ L                YK   +         
Sbjct: 518  SFKDPYLLVEALTHSSGKRPEIRTCYERLEFLGDAVLDYVITMHFYKEYSNDKFSAEFFT 577

Query: 1296 ----------CSTL--LLSQITEYV--KSFPKP--GETTDSGPSMKAPKALGDLLESIVG 1339
                      C  L  + +++ E++   S  K    +T +   ++      G  LE+   
Sbjct: 578  NMRSISVNNECYALSAIKAKLDEHILCDSVVKNNIAQTMEGVKNLSLESTFGWELETYFC 637

Query: 1340 AVLIDT------KLNLDEVWR---IFKPI---LSPIVTPDKLELPPLRELIELCDSLGYF 1387
             VL D        + +D  ++   +F+ I   L P+VTP+     P+ EL ELC   GY 
Sbjct: 638  QVLADVIESIAGAIFVDSGYKKEVVFQSIKPLLEPLVTPETARRHPISELHELCQKKGYK 697

Query: 1388 VK--ENCTLKGEM-VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCE 1440
            +K      + GE  V  E++            +  +   A+  AA  +LK++++C+
Sbjct: 698  MKVYPPVRVNGETSVTIEVKTNGITYKNNPPAKASNNDTARKLAAKDVLKQIKICK 753


>gi|451850832|gb|EMD64133.1| hypothetical protein COCSADRAFT_142297 [Cochliobolus sativus
           ND90Pr]
          Length = 1435

 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 181/673 (26%), Positives = 313/673 (46%), Gaps = 67/673 (9%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F  R YQ ++   + + N I V++TG+GKT IA+   +   +  K +   KL+ FLAPTV
Sbjct: 22  FHLRGYQAEMIAESMKANIIVVMDTGSGKTHIAIERARAELETCKPD---KLVWFLAPTV 78

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVM-TPQILLDALRK 161
            L  QQY+V + +           + V+ W +Q  W +    N  +VM T QILLDAL  
Sbjct: 79  ALCEQQYEVFQANLPGYGHLLLCGRDVELWTTQRAWNEVFQHNVRIVMSTHQILLDALTH 138

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKSDNK---PKVFGMTASPVVRKGV 216
            F+SL  +  ++ DE HH T  HP  KIM +FY    SD     P+V G++ASPV+R   
Sbjct: 139 GFMSLQKLALLIFDEAHHCTLKHPAHKIMSDFYMPRLSDRTFVLPRVLGLSASPVMR--- 195

Query: 217 SSAMDCEGQISELESTLDSQVFTIE-DKTEM--EVFVPSAKESCRFYDQSKFCGSDLKGK 273
            +A + +G +  +E  L + V T +  ++E+   V  P   +     + S    S L   
Sbjct: 196 -AAANKQG-LETIERNLQATVRTPKLYRSELLRSVHRPELIQVNYTREPSTGSPSMLLLA 253

Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDEL-GLICAYEA 332
           L+  +  +D        + L   KD  +  + L+K    + ++  YC D+L  L+   EA
Sbjct: 254 LKSVYVNYDLMEDPYVLALLEQQKDGCNVSRQLQKL---WDSRKSYCYDQLKQLVSKAEA 310

Query: 333 VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADK-----IFLDFGFDYS 387
           +    +++  +  E  +Y     QC    + ++H     L   +K     IF      ++
Sbjct: 311 MA---QELGNSAMEHYVY-----QCVNGFQNLVHGQSCDLSTDEKRHLLNIFQRLPTQHT 362

Query: 388 KAVDLGYISTKLHELLQLF----LSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTH 442
             +    + +  H++  L     +    +     ++FVE R+  A + E         T 
Sbjct: 363 TGISSSILESLSHKVNVLIDIIVVEAATNLNFTGLVFVEQRVWVASLAEILASHPRTKTL 422

Query: 443 LTVAYLTGSTTS-------VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSY 495
           L +    G++ S        +    K Q+ VL+ F+ G +NL+  T V+EEG+ VP+C  
Sbjct: 423 LRIGTFVGTSQSSQHKSSIFNYANLKNQQTVLDDFKAGIINLVLTTSVLEEGIDVPSCHL 482

Query: 496 VIRFDLPKTVSSYIQSRGRARQHNSQ-FILMLERGNLKQRNKLFDIIRSERSVTD----- 549
           V+ F+ PKT+  ++Q RGRARQ  S+ +IL+ + G+         +    R   +     
Sbjct: 483 VVCFEAPKTLKGFVQRRGRARQQRSRYYILVPDMGDAYTSASWQSLEAQMRKAYEDDERQ 542

Query: 550 TALSRDPEACFLKACTYVK---TKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPK 606
           TALS + E        Y++   ++   +E+TGA +T D+++  ++ +C  L S  Y   +
Sbjct: 543 TALSFEKE--------YIEEYDSRCLRIETTGALLTLDNAMQHLYHFCARLSSGTYVDAR 594

Query: 607 PIFKYKSAEEAYECELTLPSNAPFQTIVGPTSR---NKNLSKQLVCLEACEKLHQVGALN 663
           P F + +       + +LP           +SR    + ++++    EA + L+  G +N
Sbjct: 595 PEFDFTNVNGQISAKASLPICVDLTVRTANSSRTWKTERMAQKDAAFEAYKTLYIAGLVN 654

Query: 664 DHLLPSVEEPSEN 676
           ++LLP +EE  E+
Sbjct: 655 ENLLPVIEEDVEH 667



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 121/270 (44%), Gaps = 37/270 (13%)

Query: 1016 DVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNF---HIPSSLILEALTTLGCC 1072
            D+P S      L PS+  +LE+ M+A+ LR  +   S N    H+P  +IL ALT     
Sbjct: 908  DLPASYAVLASLFPSITHKLETYMVANALRTTV-LQSVNIDISHLP--IILLALTPSAVD 964

Query: 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQG 1132
               + +RLE LGD +LK+  S HL  T+ +  EG L+ ++S  V N  L +    + L  
Sbjct: 965  GEENYQRLEFLGDCILKFITSLHLMATHLRMPEGMLTGKKSKLVSNGYLARAALAKGLDE 1024

Query: 1133 YIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWM 1192
            +I    F   +W        +P                ++ +Q    +   P        
Sbjct: 1025 FILYKRFTGAKW--------KP----------------RYVSQ-VLAITNPPAKQEK--- 1056

Query: 1193 GSKTIADCAEALIGAYYVGGGLIAALYMMK-WLGIDADLEVSLVDDCITRASLRSYVPRI 1251
             SK IAD  E+LIGA YV GG   A   +K  L ++  + +   +D +  A+       +
Sbjct: 1057 SSKLIADVIESLIGASYVVGGFSKAFACVKALLPLEDWMPIPQANDTLYNAAPEQ--DSV 1114

Query: 1252 NEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281
              +  +E+ +G+ F  K +L EA+TH + +
Sbjct: 1115 MGVIPVENLVGHIFNNKAMLLEALTHPTFR 1144


>gi|242809985|ref|XP_002485488.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218716113|gb|EED15535.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1420

 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 177/674 (26%), Positives = 298/674 (44%), Gaps = 64/674 (9%)

Query: 31  AVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN 90
           A+D P+      N  PR YQ ++   + R+NTI  +ETG+GKT IAV+ I+   + +   
Sbjct: 15  AMDKPN------NIKPRAYQQEMLAESLRQNTIVAMETGSGKTQIAVLRIQ---EELSRC 65

Query: 91  GFKKLIIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVL 148
             KKL+ FL PTV L  QQY VI      ++     G+  VD W +Q  W K +    ++
Sbjct: 66  SPKKLVWFLTPTVALAEQQYTVISKQLPIYQSRLLLGSDNVDHWSTQQIWDKILLNIRIV 125

Query: 149 VMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS----DNKPKVF 204
           V TPQ+LLDA+   F+ L  +  +V DE H      P+  IM+ ++H      D  P + 
Sbjct: 126 VSTPQVLLDAMCHGFVKLSGLSLLVFDEAHRCVKASPFNGIMRLYHHARKSGLDELPAIL 185

Query: 205 GMTASPVVRKGVSSAMDCEGQISELEST---LDSQVFTIEDKTEMEVFVPSAKESCRFYD 261
           G+TA+P  +    +    E  +  +  T      ++     K E+ +   S++      D
Sbjct: 186 GLTATPATKATAEAVKLLEDNLHAICRTPVIEREELLKWTHKPELSIVTYSSQS-----D 240

Query: 262 QSKFCGSDLKGKLEVSWSKF--DASLSKLQG------SQLNCYKDMDDKHKTLRKQLSDY 313
           Q+      L   LE++ +    D  +  L+       SQ    K +D      RK++   
Sbjct: 241 QTTEILKGLDDILELTLADIENDPYVKSLRAKKDDKKSQEILIKLLDSGKTFTRKEIMSL 300

Query: 314 HAKILYCLDELGLICAYEAVKICLEKVLKA---QEECEIYRQSSLQCKYFLEEVLHVIGS 370
             +      ELG   A   V  C EK ++A   + +  I+RQ     K ++ + L    S
Sbjct: 301 AQRAQVINAELGSWAADVFVVTCAEKFIEAAVHRSDNNIFRQWEDAEKIYMMQYL----S 356

Query: 371 ALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKV 429
            LP   K  +     +    D  +IS K   L+     ++    +V  I+F E+     +
Sbjct: 357 MLPAIAKTRV-----WGSVPD--HISQKAKSLITTIANTYNPGYRV--IVFAEQRATVIM 407

Query: 430 VERFVKKVPFLTHLTVAYLTGST------TSVDALTPKV-QKEVLESFRGGKVNLLFATD 482
           +   +   P    +   Y  G++      +++  L+  V QK+VL   R GK N+L AT+
Sbjct: 408 LAHLLSVHPLTKGIVTKYFLGNSNYANRKSNITELSTLVEQKDVLTELRVGKTNVLIATN 467

Query: 483 VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIR 542
           V+EEG+ VP C+ VI FD PK + S+IQ RGRAR   S+ +L ++  +     K   +  
Sbjct: 468 VLEEGIDVPACNIVICFDPPKDLRSFIQRRGRARDRQSRLVLFIDGNDDDGLAKWESMEE 527

Query: 543 SERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKY 602
             + +    +    E   L+      T+   V ST A +   ++   +  +C  + S  +
Sbjct: 528 KLKEIYADNMRELKEIKALEDIEEESTEILKVPSTEAVLNHQNAQPFLAHFCATV-SYAH 586

Query: 603 YTPKPIFKYKSAEEAY-----ECELTLPSNA-PFQTIVGPTS--RNKNLSKQLVCLEACE 654
            T +P +  +  E +        ++ LPS   P   +    S  R +  +K+    +A  
Sbjct: 587 TTNQPEYIIERQEVSLGFTQITAKVVLPSYIDPSLRVAFSKSKWRTEKAAKRDAAFQAYI 646

Query: 655 KLHQVGALNDHLLP 668
            L+  G ++D+L+P
Sbjct: 647 ALYDAGMVDDNLMP 660



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 128/284 (45%), Gaps = 53/284 (18%)

Query: 1006 HMPPELLVRVD-VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILE 1064
             + P  L  +D +P    K    +PS+  ++E L +A +L   +    +  ++  S +L 
Sbjct: 905  QLEPVRLCHIDRLPAKFSKFALFIPSITHKIEVLFIAERLARTVLSRVKFENL--SHVLT 962

Query: 1065 ALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL 1124
            A++     E    +R E LGDS+LK   S HL +  P  HEG LSA +   V N  LH+ 
Sbjct: 963  AISASSAQEEHDYQRYEFLGDSLLKLITSIHLVVKKPLWHEGLLSAEKDTIVSNGRLHRT 1022

Query: 1125 GTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP 1184
              D  L  +I   +F  R+W        RP                 + +Q   V   K 
Sbjct: 1023 ALDLGLDKFILTKSFTGRKW--------RP----------------NYISQFETVTEEK- 1057

Query: 1185 CDMGHRWMGSKTIADCAEALIGAYYVGGGL-----IAALYM--MKWLGIDADL----EVS 1233
                 R M +KT+AD  EAL+GA ++ GG       A +++    W  I  D+    EV+
Sbjct: 1058 -----RQMSTKTLADVVEALLGAAFLDGGYEKLESCAKIFLPEQTWTSISDDMRTLYEVA 1112

Query: 1234 LVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITH 1277
            LV      ++  S  P++ ++++I   +GY+F    +L EA+TH
Sbjct: 1113 LV------SNQASSHPKLGQMEEI---LGYKFNKPSILFEALTH 1147


>gi|330944921|ref|XP_003306459.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1]
 gi|311316023|gb|EFQ85435.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1]
          Length = 1448

 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 178/695 (25%), Positives = 311/695 (44%), Gaps = 70/695 (10%)

Query: 23  MGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK- 81
           M S  HD +    S ++    F  R YQ ++ E + R N I V++TG+GKT IA+   + 
Sbjct: 39  MDSPMHDDSTATASGASPCETFQLRAYQAEMVEESMRANIIVVMDTGSGKTQIAIERTRA 98

Query: 82  DIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQ-CWQ 139
           ++         +K++ FLAPTV L  QQ++V   +   F  +   G   ++ W +Q  W 
Sbjct: 99  ELETCQPDKPTRKIVWFLAPTVSLCEQQHEVFMSNLPGFGHQILCGRDDIEFWTTQRQWD 158

Query: 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH---- 195
             +    ++V T Q+L +AL   F++L  +  ++ DE HH T NHP  ++M +FY     
Sbjct: 159 SILTNVRIVVSTHQVLFEALTHGFVTLTKLALLIFDEAHHCTLNHPANQLMTKFYMPQLH 218

Query: 196 -KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLD------SQVFTIEDKTEM-E 247
             S + PKV G+TASPV+ K V++    E     L +T        S++     + E+ +
Sbjct: 219 CNSTSLPKVLGLTASPVM-KAVATRQGLELIEQNLYATAKTPKLHRSELMRYVHQPELVQ 277

Query: 248 VFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLR 307
           +  PSA              S L   L+ ++  +D      +   L    D   K   + 
Sbjct: 278 IAYPSAPPGTHH--------SQLLLALQDAYQTYDLQ----KDPYLIALLDQHSKGYDVS 325

Query: 308 KQLSD-YHAKILYCLDELGLI------CAYEAVKICLEKVLKA-----QEECEIYRQSSL 355
           +QL   + ++  YC D+L  +       A E     +E  L+      +    I+ Q  L
Sbjct: 326 RQLDRLWSSRKTYCYDQLKQLKNKAEAMADELGTSVMEFYLRQCIATFENMTGIFDQQLL 385

Query: 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQ-LFLSFGKSTQ 414
                  + L  +  +LPL +   +  G        L  +S K++ L+  L      +  
Sbjct: 386 DLSTNERQHLLNVFKSLPLNNPTSVPDGI-------LDNLSQKVNILVDTLVAEVEGNPD 438

Query: 415 VLCIIFVERIIAAKVVERFVKKVPFLTH-LTVAYLTGSTTSVDALT-------PKVQKEV 466
              ++FVE+ +    +   +   P   H L V    G++ S    +       PK Q+  
Sbjct: 439 FTGLVFVEQRVWVASLAEILTCHPRTKHLLRVGTFVGTSKSSKRKSNISVFAEPKNQQTT 498

Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
           L+ FR G +NL+ AT V+EEG+ V +C  VI F+ PK + S++Q RGRAR+  S++++ +
Sbjct: 499 LDDFRAGIINLVLATSVLEEGIDVSSCHLVICFEQPKNLKSFVQRRGRARRQRSRYLVFV 558

Query: 527 ERGNLKQRNKLFDIIRSE--RSVTD----TALSRDPEACFLKACTYVKTKSYIVESTGAS 580
                 Q  K +  + +E  ++  D      L+++ E        Y++     +ESTGA 
Sbjct: 559 PDTRNVQSVKSWQSLEAEMRKAYEDDNRKVRLAQEKEQVDEYGERYLR-----IESTGAL 613

Query: 581 VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSR- 639
           +T D++   +H +C  L S  Y    P F +         ++TLP +   +     + + 
Sbjct: 614 LTLDNASQHLHHFCARLASGTYANMTPEFDFTHDHGQITAKVTLPISVDPKVRTAKSLKT 673

Query: 640 --NKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE 672
              + ++++    EA + L+    +ND+LLP  +E
Sbjct: 674 WVTERMAQKDAAFEAYKALYHAKLVNDNLLPVRDE 708



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 114/278 (41%), Gaps = 53/278 (19%)

Query: 1016 DVPISVVKSLYLLPSVMQRLESLMLASQLREEI--NCHSRNFHIPSSLILEALTTLGCCE 1073
            ++PI       L PS++ +LE  ++A  LR  +       N H+P  +++ ALT+    E
Sbjct: 952  NLPIPYAIFGLLFPSIVHKLEVNIVAETLRTTLLKPVEVDNLHLP--VLVTALTSSATNE 1009

Query: 1074 SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGY 1133
                +RLE LGD +LK+  S HL     +  EG L+ ++   V N  L +      L  Y
Sbjct: 1010 GNDYQRLEFLGDCILKFIASLHLMAANLQMPEGMLTGKKGKLVSNGYLARATLAAGLDQY 1069

Query: 1134 IRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMG 1193
            I    F   +W  P  +SL                           V+ +      +   
Sbjct: 1070 IFYKRFTGAKW-KPRYISL---------------------------VLAESTLPEKQEKS 1101

Query: 1194 SKTIADCAEALIGAYYVGGGLIAA-------LYMMKWLGIDADLEVSLVDDCITRASLRS 1246
            SK IAD  E+LIGA Y+ GG   A       L + KW  +    E+           L +
Sbjct: 1102 SKLIADVIESLIGASYIIGGFSKAFACVQTLLPLEKWTPLAEAKEI-----------LYN 1150

Query: 1247 YVPRINEIKD---IESKIGYEFTVKFLLQEAITHASVQ 1281
              P  + +     IE  +GY+F  K LL EA+TH + +
Sbjct: 1151 AAPHQDTVMSLGLIEKLLGYKFNNKALLLEALTHVTFR 1188


>gi|346327498|gb|EGX97094.1| RNA helicase/RNAse III, putative [Cordyceps militaris CM01]
          Length = 1392

 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 176/702 (25%), Positives = 301/702 (42%), Gaps = 113/702 (16%)

Query: 29  DHAVDG-PSSSTNSINFI--------PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVML 79
           DH V G P +S + ++           R YQL++ +++ + N I  ++TG+GKT IA++ 
Sbjct: 6   DHKVGGIPPASADGLDLTMEDAPFRASRAYQLEMLQMSLKENVIVAMDTGSGKTQIAILR 65

Query: 80  IKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQCW 138
           I+  AQ ++S+  +KLI FLAPTV L  QQ   IR+      +    G   V  W +  W
Sbjct: 66  IR--AQ-LESSSDQKLIWFLAPTVLLCAQQVAAIRMEIPSISIRLIVGNDNVHTWGASTW 122

Query: 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--- 195
           +  ++    +V T Q+LLDAL  AF+ LD          H+  G+HP  KIM  FYH   
Sbjct: 123 KSLLSGTQAVVSTYQVLLDALDHAFVKLD---------AHNCVGSHPGGKIMNHFYHYQT 173

Query: 196 ------KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS-------------- 235
                  S  +P + G+TA+P ++  ++        + +LE  LD+              
Sbjct: 174 TPQEAANSSARPAILGLTATPSMQAHITG-------VEKLEKVLDAKCVSPSLHREELLR 226

Query: 236 -----QVFTIE-DKTEMEVF---VPSAKESCRFYD--QSKFCGSDLKGKLEVSWSKFDAS 284
                Q+  IE + T  E +   + S ++ C   D  +  +  S      + S  +    
Sbjct: 227 HVKRPQLRIIECESTSTEHYTESMTSLRQECVKMDILEDPYVISLRTQNTDRSMRRLQRV 286

Query: 285 LSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQ 344
           +++ +         + ++ +T+R  L  + A       +   +   E+V   L+  +  +
Sbjct: 287 MAEQKTWSRLQVSSLLNRSRTIRNVLGPWAADFYIWRSKHTFLQNLESVVPSLDGWIPEE 346

Query: 345 EECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQ 404
                        K ++  VL  I +  P    I  D             +S K+H LL+
Sbjct: 347 -------------KLYIARVLQDIAALEPTPRPIGQD------------SVSDKVHLLLR 381

Query: 405 LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTT------SVDA 457
             L+F     V+ IIFV     A V+   ++ +P +     +  + G++       S+  
Sbjct: 382 ELLTF--QGDVIGIIFVTERATAAVLAALLRSIPGIRDRYQIGCMVGTSNNQLRKRSLYE 439

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
                  + L  FR G +NLL AT V+EEG+ VP C+ VI FD P++  S+IQ RGRAR 
Sbjct: 440 FFGSNDLQTLHEFREGTINLLVATAVLEEGIDVPACNLVICFDSPQSPKSFIQRRGRARM 499

Query: 518 HNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTK---SYIV 574
            +S  +L       K+ + + +    E  +       + E   L+    +       + V
Sbjct: 500 QDSTLLLFTH----KESSIIDEWAVFEEEIQKLCQDSEREHQHLQTLERLDEGIDFCFRV 555

Query: 575 ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE----AYECELTLPSNAPF 630
             TGA +  D++   +  +C ++ S +Y   +P +  K  E     A   ++ LP++ P 
Sbjct: 556 PYTGARLDHDNAKQHLEHFCRVISSRQYTDGRPDYVTKLTEGDHGLAITAQVFLPASLPP 615

Query: 631 QTIVGPTSRN----KNLSKQLVCLEACEKLHQVGALNDHLLP 668
           +  V  +SR+     N  K     +A   L   G +N +LLP
Sbjct: 616 KLRVFQSSRSWLSEANAMKD-AAFQAYLALFHAGLVNKNLLP 656



 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 107/258 (41%), Gaps = 39/258 (15%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLIL-EALTTLGCCESFSMERLELLGD 1085
            L+PS++  +E++++  QL   +        I    +L +A++     E    ERLE LGD
Sbjct: 904  LVPSIVHIIETMLIVRQLSVTL---LDPLGISDYFLLRDAISARSAMEPTHYERLEFLGD 960

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV 1145
            S+LKY  S    +T     EG LS  +   + NS L +   +  L  +I    F  ++W 
Sbjct: 961  SILKYCASMQAAVTNLDWSEGYLSKYKERLIANSRLSRAAVETGLSRFILSMPFTGQKW- 1019

Query: 1146 APGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALI 1205
                   RP   E                    V+ GK      R + +K +AD  EALI
Sbjct: 1020 -------RPFHLET-------------------VLAGKMKPSPKRNLSTKVLADVVEALI 1053

Query: 1206 GAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPR--INE--IKDIESKI 1261
            G  Y  GG+   +  +     + D     +D    R    S  P   +N   +  +E  +
Sbjct: 1054 GVAYTVGGIPKTIQCLSIFITECD----WMDPSDCREEFFSCAPSHGVNSSYLHVLEELV 1109

Query: 1262 GYEFTVKFLLQEAITHAS 1279
            GY FT K LL EA THAS
Sbjct: 1110 GYSFTKKSLLLEATTHAS 1127


>gi|225684422|gb|EEH22706.1| dicer [Paracoccidioides brasiliensis Pb03]
          Length = 1469

 Score =  164 bits (415), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 167/652 (25%), Positives = 281/652 (43%), Gaps = 97/652 (14%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFK-KLIIFLAP 101
           PR YQL++FE AK  N IAVL+TG+GKT+IAV+L+K + +   A ++ G   ++  FL  
Sbjct: 98  PREYQLELFEKAKTTNIIAVLDTGSGKTLIAVLLLKHMIRIELADRARGKPPRISFFLVD 157

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V LV+QQ  V++ + D  ++++ GA   D W  + W++  +KN ++V T ++L   L  
Sbjct: 158 SVTLVYQQAAVLKANIDQSIDKFCGALQTDLWSKETWKRHFSKNMIIVCTAEVLYQCLLH 217

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYT-------------------KIMKEFY---HKSDN 199
           +F+ ++ +  ++ DE HH   +HPY                    +I+K+FY    +S +
Sbjct: 218 SFIQMEQINLLIFDEAHHTKKDHPYARLEGSMFSAHSVSVADGIYRIVKDFYLQMTESQH 277

Query: 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF 259
           +PK+FGMTASP     V + +D    +  LE  LDSQ+ T  +   +   V    E    
Sbjct: 278 RPKIFGMTASP-----VDAKVDVVTAVKSLEMLLDSQIATASNLDALRQSVARPTEQEWV 332

Query: 260 YDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILY 319
           YD+                  F+  L K   SQ   + ++    K     L        +
Sbjct: 333 YDRLD--------------PAFETDLYKSMHSQ---FGNISVLKKMFICSLEATSTLGRW 375

Query: 320 CLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
           C D L  I   E     LE  +  +      R SS      ++E++  +  A+    K+ 
Sbjct: 376 CSDWLWTIVLDEPSLPKLEGSISRR----YIRTSSGNHTKGVDEMIKSLREAV----KVI 427

Query: 380 LDFGFDYSKAVDLGYISTKLHEL-LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438
            D  F Y+      ++S K+  L  QL   F + T   CI+FVE+  +A ++      + 
Sbjct: 428 KDHTF-YTPVDCPEHLSPKVRLLHHQLSKYFERHTDTKCIVFVEKRHSATLLGELFSLIG 486

Query: 439 FLTHLTVAYLTGSTTSV---DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSY 495
              H+    L G  T     + ++ + Q   L  FR G++N L+A  +  + +    C  
Sbjct: 487 -TRHMRTGVLIGVRTDEAGGEKVSFRQQFWTLLKFRKGELNCLYAHMMERDNLIHQRC-- 543

Query: 496 VIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRD 555
                        ++    A     QF   L             IIR      D  L + 
Sbjct: 544 -------------LEEAQEAENIMRQFCESLPEDR---------IIRGASDELDKFLYK- 580

Query: 556 PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE 615
            E C          K++ V STG+ +T +S++ ++  Y   L  +   + +  +      
Sbjct: 581 -ERC---------RKTFTVPSTGSKLTYNSALAVLAHYASSLQYENEMSTRVNYFIHRIR 630

Query: 616 EAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
            A+ CE+ LP  +P + + G  +  K  +KQ    E C  L + G L+D+ L
Sbjct: 631 GAFVCEVVLPEKSPVRGLTGRPAVAKLSAKQSAAFETCLMLRKNGLLDDYFL 682



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 135/572 (23%), Positives = 201/572 (35%), Gaps = 162/572 (28%)

Query: 963  GQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVV 1022
             QP++R +      NLL    D     KG ++           ++ PE L    +P  V 
Sbjct: 929  NQPVVRAELVRLRRNLL----DRTTEHKGEETA---------YYICPEPLRISALPAPVA 975

Query: 1023 KSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------------- 1067
               +  P+++ R+ES ++A +      C+     I   L LEALT               
Sbjct: 976  VFAFTFPAMISRIESYLIALE-----ACNKLQLTIIPELALEALTKDSDNTEEHRAEQIH 1030

Query: 1068 -TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
               G  +++  ERLE LGD  LK + S  LF       E     +R   +CN  L     
Sbjct: 1031 FQRGMGKNY--ERLEFLGDCFLKMSTSISLFAMNADDDEFDFHVKRMCLICNQNLFNTAM 1088

Query: 1127 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD 1186
               +  ++R   F  R W   G   ++ +  +   +T E                     
Sbjct: 1089 SLGIYEFVRTQGFSRRNWYPEG---IKLLQGKAKSETAE--------------------- 1124

Query: 1187 MGHRWMGSKTIADCAEALIGAYYVGGGLI----AALYMMKWLGIDADLEVSLVDDCITRA 1242
                 +  K+IAD  EALIGA  + GG +     A+  +       + +VS     +   
Sbjct: 1125 -NKHSLADKSIADICEALIGASLLSGGRVHRFDTAVKAVTAFVNSGNHQVSDWQSYVGLY 1183

Query: 1243 SLRSYVPRINEIKD--------IESKIGYEFTVKFLLQEAITHASVQEFY----CYQN-- 1288
            SL  Y  +I E  D        I  ++GY F    LL  A THAS    +    CYQ   
Sbjct: 1184 SLPRY--QIAEADDTQLDLAQQIGDRLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLE 1241

Query: 1289 ------------------------------------------------LYKHLQHCSTLL 1300
                                                            L++HL + S  L
Sbjct: 1242 FLGDSLLDMVCVEHLYHKYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKAL 1301

Query: 1301 LSQITEY--------VKSFPKPG-ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDE 1351
            L QIT Y         +S   P   TT S P    PK L D+LE+ +GA+ +D+  + + 
Sbjct: 1302 LGQITRYAEEIEATETESIDSPDFWTTTSDP----PKCLPDMLEAYIGAIFVDSNFSFEV 1357

Query: 1352 VWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKD 1409
            V   F+                L++  E       F  ++ T  GE+  V A     L  
Sbjct: 1358 VEDFFQQC--------------LKKYFEDMSIYDTFANKHPTASGEVDSVDAAEHRVLAA 1403

Query: 1410 VLL----VGEGQERSRKAAKGKAASQLLKKLE 1437
            V++    V EG   S   AK KA+   L KL+
Sbjct: 1404 VIIHDEFVAEGIASSAGYAKVKASENALSKLD 1435


>gi|70981901|ref|XP_746479.1| RNA helicase/RNAse III [Aspergillus fumigatus Af293]
 gi|66844102|gb|EAL84441.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293]
          Length = 1384

 Score =  164 bits (414), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 173/688 (25%), Positives = 297/688 (43%), Gaps = 92/688 (13%)

Query: 36  SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL 95
           S+  ++  + PR YQL++ E + + N I           +AV  +    +    N    L
Sbjct: 6   STCQDASPYQPRNYQLEMLEASMKENII-----------VAVCSLNSYVKLQNGNDNDPL 54

Query: 96  IIFL----APTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEW-DSQCWQKEINKNDVLV 149
             +     A    L  QQ++VI  +          G   V+ W D   W   +N   V+V
Sbjct: 55  DGYRERQNAYVFALCIQQHEVIASNLPAVRTRTLTGLDKVELWTDQSIWDAVLNGYRVIV 114

Query: 150 MTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKV 203
            T  +L DAL   F+ +  +  ++ DE HH T  H   KIM++FYH +  K      P++
Sbjct: 115 STHAVLADALSHGFVKMSQLALLIFDEAHHCTRRHAANKIMQDFYHPTLTKSGPAAVPRI 174

Query: 204 FGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFY-- 260
            G+TASPVVR           ++  +ES LD+   T    + E+  F         +Y  
Sbjct: 175 MGLTASPVVRSN-------HQELLMVESNLDAVCRTPRLHRQELLKFTHRPHLQQIWYTP 227

Query: 261 -DQSKFCGSDLK-GKLEVSWSKFDAS----LSKLQGSQLN---CYKDMDDKHKTLRKQLS 311
            D + F  + L  G L  +W   D      + +L+ S L+     K +       R+QL 
Sbjct: 228 TDPAGFRSASLTLGALYHAWENLDIGDDPYIQRLRKSPLDDRALKKALLTGKTYCREQLR 287

Query: 312 DYHAKILYCLDELGLICA----YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHV 367
            +  +  +  +ELG   A    Y ++K   ++V          R S +   +   E  ++
Sbjct: 288 RFVDRSRHIFEELGEWAAEYYIYASIKQLRDRV----------RDSYMSGDWDEAEKAYL 337

Query: 368 IG--SALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII 425
           +   S +P +D   + F  +     D   IS K   LL  FL      +   +IFV++ +
Sbjct: 338 VDFLSKIPTSD---IHFALNDP---DGFRISPKFESLLN-FLDSSDQREFSGLIFVKQRV 390

Query: 426 AAKVVERFVKKVPFLTHL--TVAYLTGSTTSV------DALTPKVQKEVLESFRGGKVNL 477
               +   +   P+        AY+  S +S       D L  ++Q++ L+ FR G+ NL
Sbjct: 391 TVSAMTSLLSVHPYTRERFRCAAYVGWSNSSASKDILGDLLNMQLQRDTLDDFRSGRKNL 450

Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           + ATDV+EEG+ +  CS V+ +D P  + S+IQ RGRAR+  S F +M    +       
Sbjct: 451 IIATDVLEEGIDLSACSVVVCYDKPPNLKSFIQRRGRARRKQSTFAIMFPTDDTSA---- 506

Query: 538 FDIIRS---ERSVTDTALSRDPEACFLKACTYVKTKSYIVE-----STGASVTTDSSVNL 589
            D+ R    E+++ +    +D E               ++E     ST A +T D ++  
Sbjct: 507 -DVSRWQDLEQAMIEA--YQDDERQLQSVSALESLDEEVMERLTGDSTSAVLTADMAMAH 563

Query: 590 IHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPS--NAPFQTIVGPT-SRNKNLSK 645
           +H +C +LP   Y   +P+F +++ E+   +  + LPS  +   +   G    R +  + 
Sbjct: 564 LHHFCAVLPPQPYVDMRPVFSFETNEDGLLKGTVILPSCVHPKVRRTEGRRWWRTERAAM 623

Query: 646 QLVCLEACEKLHQVGALNDHLLPSVEEP 673
           +    +A + L++ G +NDHLLP  ++P
Sbjct: 624 KETAFQAYKSLYEFGLVNDHLLPLTKKP 651



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 131/292 (44%), Gaps = 43/292 (14%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSS-LILEALTTLGCCESF 1075
            +P ++      + +++++LE  ++A++LR+ I    R+    S+  I+ A++T       
Sbjct: 891  LPFTMAIFGLFISAIVEQLEIELIATRLRDTI---LRDVSFKSTDHIITAISTPLAHRLT 947

Query: 1076 SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIR 1135
            + +R E LGDS+LK++VSC LF  +P  HEG LS  R   V N  L K   D  L  YI 
Sbjct: 948  NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRDMIVQNPRLAKAALDTGLDAYIV 1007

Query: 1136 DSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSK 1195
                  R+W AP                          ++    V  K      R M +K
Sbjct: 1008 TKRLASRKWSAP------------------------LISEKLGRVPAK------RQMSTK 1037

Query: 1196 TIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP---RIN 1252
             +AD  EALIGA YV GG   A   ++    + +L    VD   TR + RS  P   R  
Sbjct: 1038 VLADVVEALIGAAYVDGGHSTAQACIRRFLPEINLHA--VD---TRTAARSVAPESARHM 1092

Query: 1253 EIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQI 1304
                ++  IGY F  + LL EA+TH S  ++      Y+ L++    +L  +
Sbjct: 1093 MNDRLKDHIGYTFEDESLLVEALTHPSC-DYDSTTQSYQRLEYLGDAVLDMV 1143


>gi|159122296|gb|EDP47418.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163]
          Length = 1384

 Score =  164 bits (414), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 173/688 (25%), Positives = 297/688 (43%), Gaps = 92/688 (13%)

Query: 36  SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL 95
           S+  ++  + PR YQL++ E + + N I           +AV  +    +    N    L
Sbjct: 6   STCQDASPYQPRNYQLEMLEASMKENII-----------VAVCSLNSYVKLQNGNDNDPL 54

Query: 96  IIFL----APTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEW-DSQCWQKEINKNDVLV 149
             +     A    L  QQ++VI  +          G   V+ W D   W   +N   V+V
Sbjct: 55  DGYRERQNAYVFALCIQQHEVIASNLPAVRTRTLTGLDKVELWTDQSIWDAVLNGYRVIV 114

Query: 150 MTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKV 203
            T  +L DAL   F+ +  +  ++ DE HH T  H   KIM++FYH +  K      P++
Sbjct: 115 STHAVLADALSHGFVKMSQLALLIFDEAHHCTRRHAANKIMQDFYHPTLTKSGPAAVPRI 174

Query: 204 FGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFY-- 260
            G+TASPVVR           ++  +ES LD+   T    + E+  F         +Y  
Sbjct: 175 MGLTASPVVRSN-------HQELLMVESNLDAVCRTPRLHRQELLKFTHRPHLQQIWYTP 227

Query: 261 -DQSKFCGSDLK-GKLEVSWSKFDAS----LSKLQGSQLN---CYKDMDDKHKTLRKQLS 311
            D + F  + L  G L  +W   D      + +L+ S L+     K +       R+QL 
Sbjct: 228 TDPAGFRSASLTLGALYHAWENLDIGDDPYIQRLRKSPLDDRALKKALLTGKTYCREQLR 287

Query: 312 DYHAKILYCLDELGLICA----YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHV 367
            +  +  +  +ELG   A    Y ++K   ++V          R S +   +   E  ++
Sbjct: 288 RFVDRSRHIFEELGEWAAEYYIYASIKQLRDRV----------RDSYMSGDWDEAEKAYL 337

Query: 368 IG--SALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII 425
           +   S +P +D   + F  +     D   IS K   LL  FL      +   +IFV++ +
Sbjct: 338 VDFLSKIPTSD---IHFALNDP---DGFRISPKFESLLN-FLDSSDQREFSGLIFVKQRV 390

Query: 426 AAKVVERFVKKVPFLTHL--TVAYLTGSTTSV------DALTPKVQKEVLESFRGGKVNL 477
               +   +   P+        AY+  S +S       D L  ++Q++ L+ FR G+ NL
Sbjct: 391 TVSAMTSLLSVHPYTRERFRCAAYVGWSNSSASKDILGDLLNMQLQRDTLDDFRSGRKNL 450

Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           + ATDV+EEG+ +  CS V+ +D P  + S+IQ RGRAR+  S F +M    +       
Sbjct: 451 IIATDVLEEGIDLSACSVVVCYDKPPNLKSFIQRRGRARRKQSTFAIMFPTDDTSA---- 506

Query: 538 FDIIRS---ERSVTDTALSRDPEACFLKACTYVKTKSYIVE-----STGASVTTDSSVNL 589
            D+ R    E+++ +    +D E               ++E     ST A +T D ++  
Sbjct: 507 -DVSRWQDLEQAMIEA--YQDDERQLQSVSALESLDEEVMERLTGDSTSAVLTADMAMAH 563

Query: 590 IHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPS--NAPFQTIVGPT-SRNKNLSK 645
           +H +C +LP   Y   +P+F +++ E+   +  + LPS  +   +   G    R +  + 
Sbjct: 564 LHHFCAVLPPQPYVDMRPVFSFETNEDGLLKGTVILPSCVHPKVRRTEGRRWWRTERAAM 623

Query: 646 QLVCLEACEKLHQVGALNDHLLPSVEEP 673
           +    +A + L++ G +NDHLLP  ++P
Sbjct: 624 KETAFQAYKSLYEFGLVNDHLLPLTKKP 651



 Score = 97.1 bits (240), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 132/292 (45%), Gaps = 43/292 (14%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSS-LILEALTTLGCCESF 1075
            +P ++      + +++++LE  ++A++LR+ I    R+    S+  I+ A++T       
Sbjct: 891  LPFTMAIFGLFISAIVEQLEIELIATRLRDTI---LRDVSFKSTDHIITAISTPLAHRLT 947

Query: 1076 SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIR 1135
            + +R E LGDS+LK++VSC LF  +P  HEG LS  R   V N  L K   D  L  YI 
Sbjct: 948  NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRDMIVQNPRLAKAALDTGLDAYIV 1007

Query: 1136 DSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSK 1195
                  R+W AP                          ++  + V  K      R M +K
Sbjct: 1008 TKRLASRKWSAP------------------------LISEKLERVPAK------RQMSTK 1037

Query: 1196 TIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP---RIN 1252
             +AD  EALIGA YV GG   A   ++    + +L    VD   TR + RS  P   R  
Sbjct: 1038 VLADVVEALIGAAYVDGGHSTAQACIRRFLPEINLHA--VD---TRTAARSVAPESARHM 1092

Query: 1253 EIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQI 1304
                ++  IGY F  + LL EA+TH S  ++      Y+ L++    +L  +
Sbjct: 1093 MNDRLKDHIGYTFEDESLLVEALTHPSC-DYDSTTQSYQRLEYLGDAVLDMV 1143


>gi|168046558|ref|XP_001775740.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672892|gb|EDQ59423.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score =  163 bits (412), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 179/750 (23%), Positives = 301/750 (40%), Gaps = 135/750 (18%)

Query: 702  PIRALSGRWGEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVS 760
            P  +  G  G  C    +    F      + +  S F+LL    LD +V +  + L L +
Sbjct: 42   PFTSEDGSAGWTCFTYTIRFLNFKAGTDPIQQSASEFLLLSPQLLDEEVSSISVHLNLPA 101

Query: 761  -KTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSL 819
               V + ++  G +++  +++   K F    F+   GK F   K SG  +          
Sbjct: 102  FAAVDSKLNYCGVLNVSPEKVETVKKFNIWLFHLAMGKCFALPKVSGEGK---------- 151

Query: 820  WSPSYMYLLLPLEIV--NTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNS 877
                  Y +LP + +  +T       ++W        VVE     S L   +    GG +
Sbjct: 152  ----KNYYVLPCKPITGDTVPSPEELVDWH-------VVEIAITSSLLYRRKVPFFGGYA 200

Query: 878  S-PCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPF 936
            +  C+ +       G   + + NG     +L+D VV   + G    +  I+++ S  S  
Sbjct: 201  TLDCQNTQSNEALDGGG-LRMRNGIFQEHDLEDAVVTCANNGLPCFVSGILHDLSGSSFC 259

Query: 937  DGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGM 996
              +      ++ +Y+  +    L +P QPLL+  +     N +            + S  
Sbjct: 260  SQSAGRKQISYSDYYFHECKYKLEYPDQPLLKGYRLVRAGNYVRR--------TSAVSNG 311

Query: 997  NTKKPQMHVHMPPEL-LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNF 1055
            ++ KP   + +PPE+ ++ V +   + +    LPS++  LE  ++A++LR  I      F
Sbjct: 312  DSVKPWETMELPPEVCILHVGLKGKLCRGGMRLPSILHSLEMSLVAAELRNNIGSPLSCF 371

Query: 1056 HIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWA 1115
             +      EALT+  C  + S E LELLGDSVL +    H+++ +P      L + R   
Sbjct: 372  KVQ-----EALTSGACEGNHSYETLELLGDSVLNFIGGVHMYIDFPSCTSELLHSYRHDL 426

Query: 1116 VCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQ 1175
            V N  L+K G    L GYI     + + WV PG  +L  +P +               + 
Sbjct: 427  VSNRNLYKCGLACGLPGYIFAELLNTKTWVPPGP-ALEDLPQK---------------SP 470

Query: 1176 DTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLV 1235
            D +V+            G KT+AD  EALIG  ++ G L +A+  M WL +       + 
Sbjct: 471  DGQVI------------GLKTLADVVEALIGVTFLHGDLNSAVKTMVWLQVPIPFPEKIP 518

Query: 1236 DDCITRASLRSYVPRINEIKD-----IESKIGYEFTVKFLL-------------QEAITH 1277
            +  I  A ++  +   N  KD     +E KIGY+F  K LL             Q  +  
Sbjct: 519  EVII--ADIQELMEARNTFKDHDIVTLEKKIGYQFKCKSLLLSAFDYGDEVTFTQSGVPR 576

Query: 1278 ASVQ-------------------------------------------EFYC---YQNLYK 1291
             S Q                                            F C       + 
Sbjct: 577  GSFQFQRLEFLGDSVLDFLIMRHFVQLYSAFNPEQLNDLRQATVNSENFACTAIRHGFHH 636

Query: 1292 HLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDE 1351
            +L+  S +L  +I  Y  S  + G +    PS  +PKA+GDL++++ G++L+D+  + D 
Sbjct: 637  YLKRMSPILRDEIELYAASVHREGGSPFGIPSRASPKAIGDLMQTLAGSILLDSNFDHDL 696

Query: 1352 VWRIFKPILSPIVTPDKLELPPLRELIELC 1381
            VW++ KP+LSP+ TP  +   P R L  LC
Sbjct: 697  VWKVLKPLLSPLATPKTVMRHPRRLLEALC 726


>gi|336260369|ref|XP_003344980.1| hypothetical protein SMAC_06757 [Sordaria macrospora k-hell]
 gi|380095053|emb|CCC07555.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1365

 Score =  163 bits (412), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 142/529 (26%), Positives = 240/529 (45%), Gaps = 73/529 (13%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLI-KDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQL++FE + R+N I  ++TG+GKT +AV+ I +++ Q+       K I FL PTV L
Sbjct: 67  RAYQLEMFEASLRQNIIVAMDTGSGKTQVAVLRIARELEQS------DKRIWFLVPTVAL 120

Query: 106 VHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQILLDALRKAF 163
            HQQ+ V++      +     G  GVD W  Q  W   +    ++V T QIL DA    F
Sbjct: 121 AHQQHQVLQSQIPSVKTLLICGHDGVDSWSDQAVWDAILLNVRIVVSTYQILSDANAHGF 180

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVSSA 219
           + LD +  IVIDE H+ + +HP +++M E Y  +       P + G+TASP+    +S+ 
Sbjct: 181 VRLDSLSLIVIDEAHNCSKSHPISRMMTEAYLPAKRAGLPVPSILGLTASPL----MSNN 236

Query: 220 MDCEGQISELESTLDS----------QVFTIEDKTEMEVF---------VPSAKESCRFY 260
           +D    I +LE  LD+          ++    ++ EM VF            A       
Sbjct: 237 LD---DIEKLEQVLDAVCRTPTKHREELLEHVNRPEMLVFPYGDSGGPVTEPAPTDLMIR 293

Query: 261 DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYC 320
            +  + G D++   EV   K      + + ++      +  K  T +K++   + + +  
Sbjct: 294 FREAYHGLDIRKDPEVLLLK----AQRTERARQKLRHAVTKKDTTAQKEMKGVYNRSILV 349

Query: 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
             E+G   A   +   + ++L      E+  + S   +Y  E +  +    +P   K  +
Sbjct: 350 HKEVGPWAADYYLTRAISQML-----AELEHEHSDHFRYIGEALRSI---PIPTVSKEPI 401

Query: 381 DFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL 440
                         +S+K+  LL++  S  +    + I+FV+  +   +V   +   P  
Sbjct: 402 Q-------------LSSKVQTLLRILSSHQEDP--VGIVFVQERVMVSIVTHIISTHPLT 446

Query: 441 -------THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
                    +  A + G       +T     + LE FR G+ NLL AT+V+EEG+ VP C
Sbjct: 447 KDRYRTAAMIGTANVPGRKQHFKDMTNAGDNKSLEGFREGRFNLLVATNVLEEGIDVPIC 506

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIR 542
           + VI FD P  + S+IQ RGRAR+ +S   LM++  + +      D+ R
Sbjct: 507 NLVICFDKPSNIKSFIQRRGRARKGSSTLYLMVQDASGESATGWRDLER 555



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 160/385 (41%), Gaps = 56/385 (14%)

Query: 1009 PELLVRVD-VPISVVKSLYLLPSVMQRLE-SLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            P   +R+D  P +  +   ++P+  + +E SL+ A  +   + C   +  +   L+  AL
Sbjct: 775  PSTSIRMDDFPAAFAQVGAVMPAFTRAVEMSLVAADLMYNRLGCLELDNLL---LVTTAL 831

Query: 1067 TTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
            T++G     + ERLE LGD++LK+         +P  HE  LS  +   V N  L +   
Sbjct: 832  TSIGSRAPTNYERLEFLGDTILKFCACLTASALFPNHHERLLSQWKDSLVNNVRLCRASI 891

Query: 1127 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD 1186
            D  L  YI  S    ++W        RP   E  +D             D+K     P  
Sbjct: 892  DFGLDEYIIHS-MASKKW--------RPKFVENYLD-------------DSK----SPKS 925

Query: 1187 MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMK-WLGIDADLEVSLVDDCITRASLR 1245
               R M SK +AD  E+LIGA Y+ G +  AL  +   L      +    D  ++R  L 
Sbjct: 926  AETREMSSKMVADVIESLIGATYMCGDMSKALECIALLLPTSKSSKFKWQDIGLSRDKLF 985

Query: 1246 SYVPRI----NEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLL 1301
               P       +++ +E  +GY FT K LL EA+TH S        + Y+ L+     +L
Sbjct: 986  ELAPNDAVLHKQLEPLEKAMGYAFTKKSLLIEAMTHPSCPGLGDNDSCYERLEFLGDAIL 1045

Query: 1302 SQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILS 1361
              I   VK         ++GP+  A   + + L S+V A   D    L   W I +    
Sbjct: 1046 DVIV--VKRL-----MAETGPNELAHNDMHEYLSSVVTA---DIMAFLAMEWVIAR---- 1091

Query: 1362 PIVTPDKLELPPLRELIELCDSLGY 1386
                 D +E+ P R  ++  DSL +
Sbjct: 1092 ----TDTVEIDPAR--LDAIDSLPF 1110


>gi|340975794|gb|EGS22909.1| hypothetical protein CTHT_0013870 [Chaetomium thermophilum var.
           thermophilum DSM 1495]
          Length = 1660

 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 190/713 (26%), Positives = 298/713 (41%), Gaps = 122/713 (17%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQL++ E + ++N I  ++TG+GKT +A++ I+      +     K++ FLAPTV L
Sbjct: 198 PRAYQLEMLEESLKQNVIVAMDTGSGKTQVAILRIQ-----YELERSDKVVWFLAPTVPL 252

Query: 106 VHQQYDVIRVHT----------DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL 155
            HQQ+ VI+             D ++E +    GV       W   +    V+V T QIL
Sbjct: 253 CHQQHVVIQTQLPAVTTRLICGDDDIETWSAIPGV-------WDGVLKHTRVIVSTYQIL 305

Query: 156 LDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPV 211
            DA+  A + L  +  IVIDE HH    +P +++MKE Y     K    P V G+TASPV
Sbjct: 306 FDAVAHALVPLSALSLIVIDEAHHCIKMNPVSRVMKEHYAPLKAKGAQVPAVLGLTASPV 365

Query: 212 VRKGVSSAMDCEGQISELESTLDSQVFTI-EDKTEMEVFVPSAKESCRFY---DQSKFCG 267
           +R   ++  D E    +LE TL +   T    + E+   V         Y    Q +   
Sbjct: 366 MR---TNPADLE----KLEQTLFAVCKTPSRHRAELMQMVTKPDLVTVTYPGDPQGQVPE 418

Query: 268 SDLKGKLEVSWSKFDASLSK------LQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCL 321
             + G+L  ++     +         + GSQ +  K      K   + +   +A  +   
Sbjct: 419 PPVLGRLIAAYRGMQLAQDPYIQHLVMDGSQRSRAKLQKVVSKRKTRSMEHMYALCIRTK 478

Query: 322 DELGLICAYEAVKICLEKVLKA-------------QEECEIYR-----QSSLQCKYFLEE 363
           D L  +  + A +  + +V+ A             +EE E+Y         +Q + ++  
Sbjct: 479 DMLQRLGPW-AAEYYIHEVISAFFDDPEASTGPLDEEEVELYNPIFEYNLQVQERRYISS 537

Query: 364 VLHVIGSALPLADKIFLDFGFDYSKAVDLG--YISTKLHELLQLFLSFGK---STQVLCI 418
           +L  + +  P                 D G   +S K+  LL +  SF K   S + + I
Sbjct: 538 ILSQVNAQPP--------------ATTDQGPSPLSPKILALLDVLESFAKDDPSRKPVGI 583

Query: 419 IFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTSVDA---------------LTPKV 462
           IFV     A V+   +   P    H  VA + G TT V                 L  K 
Sbjct: 584 IFVRERATAAVLSHILSIHPRTAPHYRVACMVGGTTRVPGSGGGSRSNKRREYIDLIKKG 643

Query: 463 QK---EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
           +    E L++FR G+VNL+ AT V+EEG+ VP C+ V+ FD+P+ + S+IQ RGRAR   
Sbjct: 644 KDDGLEALQAFRQGEVNLVVATSVLEEGIDVPACNLVVCFDVPENLKSFIQRRGRARMGV 703

Query: 520 SQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTK---SYIV-- 574
           S+ +LM+  G   +     +    E    D  + R  E   ++    V+T+    Y V  
Sbjct: 704 SKLVLMVPEGEQAKGWDEREREMKEMYEDDMRVVRIVEE--IENGIVVETEKEDEYPVLR 761

Query: 575 -ESTGASVTTDSSVNLIHRYCEML-PSDKYYTPKPIFKYKSAEEAYECELTLP----SNA 628
              TGA VT   +   +  +C  L  S   +T    F     E         P    +  
Sbjct: 762 DPETGAQVTLHDAKAHLEHFCGTLRSSTSAFTELRPFYILHGEHGQSVNTFAPVPLRATV 821

Query: 629 PFQTIVGPTSRNKN-----LSKQLVC----LEACEKLHQVGALNDHLLPSVEE 672
               ++ P  R        LS+   C     +A +KL++ G +  HLLP  EE
Sbjct: 822 HLPVVLPPELRRIEGIRSWLSEADACRDAAFQAYQKLYEAGLVGKHLLPIREE 874



 Score = 73.9 bits (180), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 126/294 (42%), Gaps = 51/294 (17%)

Query: 1000 KPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLA-----SQLREEINCHSRN 1054
            +P+    +P   +V   VP    ++  ++P+++  L   +LA      +LRE+      +
Sbjct: 1085 EPKFDRIVPLREVVMDAVPAKYAEAALMIPALLVVLGDHLLARDLLTERLREKTGMGGDD 1144

Query: 1055 FHIPSSLILEALTTLGCCESFSMERLELLGDSVLKY--AVSCHL-FLTYPKKHEGQLSAR 1111
                   ++ AL   G       E +E LGD++LK+   V+C   +LTYP   EG LS  
Sbjct: 1145 L----GNVVRALWASGAQRPGDYENMEFLGDALLKFLTTVNCEAKYLTYP---EGFLSPI 1197

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGK 1171
            +   V N    +      L  YI D+    +RW  P   S                    
Sbjct: 1198 KDRIVSNMRFFRAAVGFGLDRYIIDAKMVQKRWRPPTISS-------------------- 1237

Query: 1172 FFTQDTKVVVGKPCDM-GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADL 1230
                    ++G+P  +   R + +KT+AD  EAL+GA Y+ GG   AL  +     D  +
Sbjct: 1238 --------ILGRPPSVTAPRQLSTKTVADVVEALVGAAYLSGGTDRALTCVPLFLPDVPI 1289

Query: 1231 EVSLVDDC----ITRASLRSYVPRINEIKDIESK-IGYEFTVKFLLQEAITHAS 1279
            +   V  C       A+    +P+   ++ IE + +GYEF  K LL EA+TH+S
Sbjct: 1290 DWLPVGRCRDILFNHAAADDPLPKT--MRRIEEQLLGYEFKKKSLLVEALTHSS 1341



 Score = 40.8 bits (94), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 16/84 (19%)

Query: 1028 LPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCES----FSMERLELL 1083
            LP  M+R+E  +L  + +++            SL++EALT   C        S++RLELL
Sbjct: 1311 LPKTMRRIEEQLLGYEFKKK------------SLLVEALTHSSCPAGPGVRGSLDRLELL 1358

Query: 1084 GDSVLKYAVSCHLFLTYPKKHEGQ 1107
            GD++L + V+  L+  Y    +GQ
Sbjct: 1359 GDALLDFLVATKLYELYKCNVDGQ 1382


>gi|393220706|gb|EJD06192.1| hypothetical protein FOMMEDRAFT_145449 [Fomitiporia mediterranea
           MF3/22]
          Length = 1473

 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 106/176 (60%), Gaps = 2/176 (1%)

Query: 36  SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL 95
           SS   +++ +PR YQ ++FE A+  N IA L+TG+GKT IA +LIK +       G  K 
Sbjct: 2   SSVEEALSLVPRAYQEEIFEQAQNGNVIAALDTGSGKTFIAALLIKWVMSQPSQAG--KK 59

Query: 96  IIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL 155
            +FL P V LV QQ DV+   T   V  Y GA GVD WD   W+ E  ++D LVMT QI 
Sbjct: 60  TVFLVPKVPLVDQQRDVLSKQTPLIVRGYVGAMGVDAWDKGRWELEFLQSDCLVMTAQIF 119

Query: 156 LDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211
            + L   + SLD V  ++ DECHHA   HPY  IM + Y  S+ KPK+FGMTASP+
Sbjct: 120 KNILVHGYWSLDQVALLIFDECHHARKYHPYNAIMVDHYRSSEWKPKIFGMTASPI 175



 Score =  120 bits (302), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 152/301 (50%), Gaps = 27/301 (8%)

Query: 394 YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-PFLTHLTVAYLTG-- 450
           ++S KL   + + +   +S     IIFV +   AK +   + +V    T L    L G  
Sbjct: 351 WLSPKLRAAVDILVKH-RSESFQGIIFVNQRQVAKALSWILGRVLETKTWLRCGELIGHG 409

Query: 451 ----STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
               S++S   +  K Q+++++SFR G +NLL ATDV EEG+  P C+ VIR+D  K + 
Sbjct: 410 ESSKSSSSGKGMDIKRQRDIVQSFRSGNLNLLIATDVGEEGLDFPACALVIRYDSVKHMV 469

Query: 507 SYIQSRGRARQHNSQFILMLERGNLKQ-------RNK------LFDIIRSERSVTDTALS 553
            Y+QSRGRARQ NS +++M    + ++       RN       ++  + +  S  +    
Sbjct: 470 GYVQSRGRARQQNSTYVVMAAENDAQEIARYKGLRNAEPELRIVYQTMNAGGSSGELDNG 529

Query: 554 RDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKY-YTPKPIFKYK 612
            + +  ++        ++Y + STGA++T  S+++L+  +C ++P D Y  + +P +  +
Sbjct: 530 DELDNDYVDPLDLASRETYTIPSTGATLTYSSAISLLSHFCSLIPGDSYTRSLQPKYIIE 589

Query: 613 SAEEA-YECELTLPSNAPFQT----IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
           SA++  +   L LP   P  +      GP  R+K  +K+ V   A   LH +G  +D+L 
Sbjct: 590 SADKTEFTATLHLPRALPLTSDQLLYNGPPKRSKKEAKRAVAFIAMRMLHTLGIFDDYLS 649

Query: 668 P 668
           P
Sbjct: 650 P 650



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 165/421 (39%), Gaps = 76/421 (18%)

Query: 900  GSVDAKNLKD------MVVLAIHTGRIYSIVEIVNNSSAES-PFDGNTDDDSKTFVNYFS 952
            G+ D  ++KD      M++ +   GR+   +    + S ++ P     +    T+  YF 
Sbjct: 793  GTYDWSDVKDNDEGKVMLMNSRRVGRVLRFIRFRPDLSVDTKPSPTTIEGSFDTYAAYFE 852

Query: 953  EKYG----------IVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQ 1002
             KY           IV    G+ +   +    P +   NF       +  +   +T++  
Sbjct: 853  AKYSFKYKKTEHVRIVATASGRIVEVSEMPRYPSSGY-NFR----VSRPQQDAYDTQQSM 907

Query: 1003 MHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNF----HIP 1058
                +P     R    + +V++  +  S  QR+  +  A          +RNF     IP
Sbjct: 908  ATFLLPESYCRRALFHMDIVEAFQVFASACQRVCDVFRARV--------ARNFLKYPPIP 959

Query: 1059 SSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118
             +LI+EALT       F+ +RLE +GDSVLK +V  ++F  +P +HEGQL+A +  +V N
Sbjct: 960  DNLIVEALTLPSAMAGFNNQRLETMGDSVLKLSVVVYIFNAFPNRHEGQLTALKENSVSN 1019

Query: 1119 STLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTK 1178
              L     +  L+ ++       R W            C+ G + +              
Sbjct: 1020 RLLLARAKEVHLERFLTSENRSMRTWRFERSSVTSLGTCKIGSEEIA------------- 1066

Query: 1179 VVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDC 1238
                    + HR    +++ DC EA +GA YV GGL  AL     LG+           C
Sbjct: 1067 --------LAHRTFPRRSLQDCMEASLGAAYVAGGLNFALQTGTALGL-----------C 1107

Query: 1239 I-------TRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS---VQEFYCYQN 1288
                     R  L  +VP       ++  + Y F    LL EA+ H S   ++ + CYQ 
Sbjct: 1108 FGGPTPWPERYPLTEFVPPAALFGKLQEDLQYTFRNGKLLVEAVKHPSFDFLENYPCYQR 1167

Query: 1289 L 1289
            L
Sbjct: 1168 L 1168



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 7/92 (7%)

Query: 1040 LASQLREEINCHSRNFHIPSSLILEALT--TLGCCESFS-MERLELLGDSVLKYAVSCHL 1096
            L  +L+E++    RN      L++EA+   +    E++   +RLE LGD+V++  V+ +L
Sbjct: 1129 LFGKLQEDLQYTFRN----GKLLVEAVKHPSFDFLENYPCYQRLEFLGDAVIELVVTTYL 1184

Query: 1097 FLTYPKKHEGQLSARRSWAVCNSTLHKLGTDR 1128
            +  +P  + GQ+S  R+ A+CN+TL  L  +R
Sbjct: 1185 YNKFPGANSGQMSWARARAICNTTLAALAVNR 1216


>gi|347835506|emb|CCD50078.1| similar to dicer-like protein 2 [Botryotinia fuckeliana]
          Length = 1378

 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 169/633 (26%), Positives = 279/633 (44%), Gaps = 107/633 (16%)

Query: 94  KLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMT 151
           K+I FLAPTV L  Q ++ ++++     ++   GA GVD W  Q  W   +    V+V +
Sbjct: 37  KIIWFLAPTVALCAQHHEYLQLNIPSVLIKMLIGADGVDRWTEQRQWDTVLKDVKVVVSS 96

Query: 152 PQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN---KPKVFGMTA 208
            Q+LLDAL   F+ +  +  I+ DE H+     P  KIMK FYH   +    P + G++A
Sbjct: 97  YQVLLDALTHGFVRMGRLSLIIFDEAHNCVNKAPGAKIMKSFYHPYKSIFPLPHILGLSA 156

Query: 209 SPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCG 267
           SPV+R    S       +S++E TLD+   T +  + ++ + V     S  +Y       
Sbjct: 157 SPVMRSSPQS-------LSDIEETLDAICCTPKIHRADLRLRVKLPLLSIIYYTPES--- 206

Query: 268 SDLKGKLEVSWSKFDASLSKLQGSQLNCYKD-------MDDKHKTLR------KQLSDYH 314
                   +  +K  ASL K+  S LN ++D         D  K+ R      K    Y 
Sbjct: 207 -------NIIVTKTVASLRKIVQS-LNIFEDPYVLTLKRSDSEKSQRELAKVLKSFKTYS 258

Query: 315 AKILYCLD---------ELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL 365
              L  +D         ELG   A   +   + + LKA          S +  + +E+  
Sbjct: 259 QTQLKSIDKTSNEIILVELGPWAADYYISTVVTRYLKAM---------SAKDTFIVEDS- 308

Query: 366 HVIGSALPLADKIFL-----DFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIF 420
                  P A+K+++           S   D G IS K+ +LL +     +      IIF
Sbjct: 309 -------PAAEKLYIAKALRQVEISPSTLSDTGKISNKVEKLLGIIAQ--QKPPFSAIIF 359

Query: 421 VERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTS---VDALTPKV----QKEVLESFRG 472
           V+      V+   +   P       +  + G++ +    D +   V    QK+ L SF+ 
Sbjct: 360 VQERATVSVLAHLLSHHPLTKDRFKIGTMVGTSLNGKRTDQIGELVDVNQQKDTLSSFKR 419

Query: 473 GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGN-- 530
           GK+++L AT+V+EEG+ VP C+ VI F  P  + S++Q RGRARQ +S+ IL+   G+  
Sbjct: 420 GKIDILIATNVLEEGIDVPACNLVICFSKPANLKSFVQRRGRARQQDSKLILLDASGDKA 479

Query: 531 -------LKQRNKLFDIIRSERSV--TDTALSRDPEACFLKACTYVKTKSYIVESTGASV 581
                   K R +    +R  + +   +TA  +  +   L+           +ESTGA +
Sbjct: 480 TNWHELERKMREEYGKEMRELQHIYEIETADEQSEDDRVLR-----------IESTGAQL 528

Query: 582 TTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKS--AEEAYECELTLPSNAPFQTIVGPTSR 639
             DS++  ++ +C +L +  +   +P F Y S    E    ++ LP +   + +    SR
Sbjct: 529 DLDSALPHLYHFCSVLTTKDFVDLRPDFVYSSELGSEYVRAKVILPGSVS-KPLRVHESR 587

Query: 640 NKNLSKQL----VCLEACEKLHQVGALNDHLLP 668
              LS++        EA   L++ G +ND+LLP
Sbjct: 588 GSWLSERSAAKDAAFEAYSALYRGGLVNDNLLP 620



 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 122/281 (43%), Gaps = 48/281 (17%)

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIP-SSLILEA 1065
            +P    V+  +P  + +   ++PS+   +E  ++  +L   I    ++  I   SLI  A
Sbjct: 852  LPASTCVQDVMPAQLSRFGMMIPSITHHIEVQLVVDRLSRTI---LKDLEISDQSLIQTA 908

Query: 1066 LTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG 1125
            +T        + +RLE LGDS+LK   S  L   +   HEG LSA +   V NS   +  
Sbjct: 909  ITHASYSLDSNYQRLEFLGDSILKLCTSVQLVAEHLDWHEGYLSAMKDRIVSNSRSSRAA 968

Query: 1126 TDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPC 1185
             +  L  YI    F   +W        RP+     VD L V                   
Sbjct: 969  AEVGLDEYIMTKKFTGAKW--------RPM----YVDDLVV------------------T 998

Query: 1186 DMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMK-------WLGIDADLEVSLVDDC 1238
            +   R M SK ++D  EALIGA  V GG+  AL  ++       WL ++   +++L    
Sbjct: 999  EQKTREMSSKILSDVVEALIGACMVDGGIPKALKSLQLFFPELNWLPLETR-QMTLYQ-- 1055

Query: 1239 ITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
              +A+   ++P    ++ +E  + Y FT K LL EA+TH S
Sbjct: 1056 --QAANDLHLP--IALRPVEQILAYTFTKKSLLVEAMTHPS 1092


>gi|212537171|ref|XP_002148741.1| RNA helicase/RNAse III, putative [Talaromyces marneffei ATCC 18224]
 gi|210068483|gb|EEA22574.1| RNA helicase/RNAse III, putative [Talaromyces marneffei ATCC 18224]
          Length = 1431

 Score =  160 bits (404), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 167/657 (25%), Positives = 289/657 (43%), Gaps = 54/657 (8%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQ ++   + R+NTI  +ETG+GKT IAV+ I+   + +     +KL+ FL PTV L
Sbjct: 27  PRAYQQEMLAESLRQNTIVAMETGSGKTQIAVLRIQ---EELSRCSPEKLVWFLTPTVAL 83

Query: 106 VHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRKAF 163
             QQY VI      ++     G+  VD W +Q  W + +    ++V TPQ+LLDA+   F
Sbjct: 84  AEQQYAVISKQIPLYQSRLLLGSDNVDHWSTQHIWDEILLNIRIVVSTPQVLLDAMSHGF 143

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK----SDNKPKVFGMTASPVVRKGVSSA 219
           + L  +  +V DE H     +P+  IM+ ++H     +D  P + G+TA+P  +    + 
Sbjct: 144 VKLSGLSLLVFDEAHRCVKANPFNGIMRLYHHARKSGADELPAILGLTATPATKATAEAV 203

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
              E  +  +  T   Q   +   T     +       R  D++     DL   L+++  
Sbjct: 204 KILEDNLHAICRTPVVQREELLKYTHKPALL--VVTYSRHLDETTKILKDLDVILDLTLI 261

Query: 280 KF--DASLSKLQGSQLN------CYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYE 331
               D  +  L+  + +        K +D      RK++     +     +ELG   A  
Sbjct: 262 DIENDPYVKSLRAKKDDEKSKGILLKILDSGKTFTRKEILSLAQRTRVIDEELGPWAAEV 321

Query: 332 AVKICLEKVLKA---QEECEIYRQSSLQCKYFLEEVLHVIGSALP-LADKIFLDFGFDYS 387
            V  C EK ++A   + +  I+RQ     K ++   L    S LP +A+        D  
Sbjct: 322 FVGTCAEKFIEASVKRSDNNIFRQWEDAEKIYMMRFL----SMLPAIAENRVWGSSPD-- 375

Query: 388 KAVDLGYISTKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVA 446
                  IS K+  L+    S +    +V  I+FVE+     ++   +   P    +   
Sbjct: 376 ------QISQKVEALITTIASKYNPGDRV--IVFVEQRATVIMLAHLLSVHPLTKEIVTK 427

Query: 447 YLTGSTTSVD---ALTP----KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
           Y  G++   +   A+T       Q++VL   R GK N+L AT+V+EEG+ VP C+ VI F
Sbjct: 428 YFLGNSNYANRKSAITELSTLSDQRDVLAELRVGKTNILIATNVLEEGIDVPACNMVICF 487

Query: 500 DLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC 559
           D PK + S+IQ RGRAR   S+ +L +++ +     K   +    + +    +    E  
Sbjct: 488 DPPKDLRSFIQRRGRARDRLSRLVLFMDKNDDDGLAKWAAMEHQLKEIYADNMRELEEIK 547

Query: 560 FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-- 617
            L+       + + + ST A ++  ++   +  +C    S  Y + +P +     E A  
Sbjct: 548 ALEDIEEESAEIFKIPSTEAVLSHQNAQPFLAHFCAT-GSSAYTSNQPEYIIDRQEFAPG 606

Query: 618 ---YECELTLPSNA-PFQTIVGPTSR--NKNLSKQLVCLEACEKLHQVGALNDHLLP 668
                 ++ LPS   P   +    S+   +  +K+    +A   L++ G ++D+L P
Sbjct: 607 LAQIAAKVVLPSYIDPSLRVAFSKSKWQTEKAAKRDAAFQAYVALYRAGMVDDNLTP 663



 Score = 77.0 bits (188), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 120/274 (43%), Gaps = 52/274 (18%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P    K    +PS+  ++E L +A +L   +   SR      + +L A++     E   
Sbjct: 921  MPAKFAKFALFIPSITHKIEVLFIAERLARTV--LSRVGFSNLAHVLTAISASSAHEEND 978

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +R E LGDS+LK   S HL +  P  HEG LSA +   V N  L++   +  L  +I  
Sbjct: 979  YQRYEFLGDSLLKLITSIHLVVNNPLWHEGMLSAAKDTIVSNGRLYRTALNLGLDRFILT 1038

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
             +F  R+W        RP                 + +Q   V   K      R + +KT
Sbjct: 1039 KSFTGRKW--------RP----------------SYVSQFETVGEEK------RELSTKT 1068

Query: 1197 IADCAEALIGAYYVGGGL-------IAALYMMKWLGIDADL----EVSLVDDCITRASLR 1245
            +AD  E+L+GA ++ GG           L    W  I  D+    E +L  D   +A++ 
Sbjct: 1069 LADVVESLLGAAFLDGGYEKLEACAKIVLPERAWSSIGDDVRTLYEAALDSD---QAAMH 1125

Query: 1246 SYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
               P++ +++++   +GY+F    +L EA+TH S
Sbjct: 1126 ---PKLGQMEEM---LGYKFNKPSILFEALTHPS 1153


>gi|189234048|ref|XP_968993.2| PREDICTED: Dicer-1 [Tribolium castaneum]
          Length = 1865

 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 173/738 (23%), Positives = 319/738 (43%), Gaps = 123/738 (16%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK-SNGFKKLIIFLAPT 102
           F PR YQ+++ + AK+RNTI      + K  I + L+++ +  ++  +G + L +   P 
Sbjct: 14  FTPREYQVELLDSAKKRNTIVCSSASSAKAFITIKLLQEFSHKMRVPHGKQALFVLDGPN 73

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V ++      +++ TD  V        +D+ ++      +  ++V+V T ++ +   +K 
Sbjct: 74  VPIMTSH---VKLLTDLTV------TSIDKEENP---PSLKASNVIVTTAEVCVLLCKKN 121

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDC 222
           F+ LD    IVID C +        +IM  +      +P++ G+TA  +  +     +  
Sbjct: 122 FVHLDSYALIVID-CLYGGQQSLVREIMARYQAIQAPRPRILGLTAGLLGSEMQPDRL-- 178

Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD 282
           E ++  LE  L S V T    +E+   +   + SCR  ++   C   +   L+    K  
Sbjct: 179 EAELQRLEKLLSSSVDT---SSEILTLI---RLSCRPRERIVECFKPIPSPLQ---DKIK 229

Query: 283 ASLSK----LQGSQLNCYKDMDDKHKTLRKQLSD-------YHAKILYCLDELGLICAYE 331
           A+++     L+  + +  +  DD      KQ+ D       +    L  LD+LG   A  
Sbjct: 230 ATITSCQDFLKDHRYDPSEIYDDDLLEEFKQVPDPKEQPLSFFDDFLEILDDLGPWSADR 289

Query: 332 AVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF-DYSKAV 390
           A    L K+ K + +    R   L C          + S++ ++ +   +  F DY+   
Sbjct: 290 AAYGMLIKIEKLKVKVPYERHYLLLC----------VASSVLVSIRALCELEFQDYTDKE 339

Query: 391 DLGYIST-KLHELLQL-------------------------------------FLSFGKS 412
            +   ST K+   LQ+                                     ++S  +S
Sbjct: 340 KVFRFSTPKVLRFLQVLKQFKPTGDKPETCDKLPDLKDPKKGKGKNYKGPRRPYISRAQS 399

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT-SVDALTPKV-------- 462
            ++LC ++FV+    A   E     +  ++     Y   S + SV+ +   V        
Sbjct: 400 DEMLCALVFVKNRYKA---EALFALLCVMSKSDEEYWWVSVSFSVNKIADPVREPREAES 456

Query: 463 ----QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518
               Q+EVL  +R  + N++ AT  +E+G  +P C+ VIRFDLP++  SYI S+ RAR +
Sbjct: 457 EHKRQEEVLRKYRSHECNIMIATSALEQGCDLPKCNLVIRFDLPQSFHSYIHSKARARAN 516

Query: 519 NSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSR------DPEACFLKACTYVKTKSY 572
            + F+L+    N  + +   + +     V +T L R      D     +   + ++ + Y
Sbjct: 517 EAHFLLL---ANENEVSDFVENLAEYNEVENTLLKRCYSLEPDKNEELVADASSLQCRPY 573

Query: 573 --IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPF 630
               E    SV+  +++ L++RYC  LPSD +    PI+  +  E  Y C + LP N+P 
Sbjct: 574 QPSAEPGANSVSLSNAIALVNRYCAKLPSDTFTRLTPIWHEEKVENGYICSIRLPINSPV 633

Query: 631 -QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP--------SVEEPSENNLISK 681
            +T+  P   N  L+++      C+ LH+ G L+D+L P        + E+ + + L   
Sbjct: 634 KKTVTSPPMINTLLARRAAAFMICQLLHKAGELDDNLQPIGKENFKVNEEDWNSSALEES 693

Query: 682 KNESL-PGAGTTKRKELH 698
             E+L P  GTTKR++ +
Sbjct: 694 DEENLDPRPGTTKRRQYY 711



 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 202/485 (41%), Gaps = 120/485 (24%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            +++L+ALT     +  ++ERLE +GDS LKYA++ +L+  Y   HEG+LS  RS  V N 
Sbjct: 1383 NVLLQALTMSNANDGINLERLETIGDSFLKYAITNYLYSKYENVHEGKLSHLRSKQVSNL 1442

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVPCECGVDTLEVPLDGKF------ 1172
             L++LG  + L  Y+  + FDP   W+ P       VP E      E  +D +F      
Sbjct: 1443 NLYRLGRRKGLGEYMIATKFDPHDNWLPPCFY----VPKELE----EALIDAQFPANCWT 1494

Query: 1173 ---FTQDTKVVVGKPCDM-------------------GHRWMGSKTIADCAEALIGAYYV 1210
                     + +   C M                       +  K+IADC EALIGAY +
Sbjct: 1495 VADMAATRDMTLDDICSMVRQRGESLSLSNIIPYNLVTQHSIPDKSIADCVEALIGAYLI 1554

Query: 1211 GGGLIAALYMMKWLGIDA--DLEVSLVDDC-ITRASLRSYV--PR------INEIKDIES 1259
              G   AL  M WLGI     LE     +  + ++ L +++  PR      ++     E 
Sbjct: 1555 ECGPRGALLFMAWLGIRVLPQLEDGTYGEIELPKSPLSNHLTYPREELDMLLDGYDQFER 1614

Query: 1260 KIGYEFTVKFLLQEAITHASVQEFY---CYQN------------LYKHLQHCSTL----- 1299
             IGY+F  +  L +A+THAS        CYQ             + +HL   + +     
Sbjct: 1615 HIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTRMHSPGA 1674

Query: 1300 -----------------------------LLSQITEYVKSFPKPGETTDSGPSM------ 1324
                                         L   + E V+ F +  E  DSG ++      
Sbjct: 1675 LTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQE--DSGHTLVDELYL 1732

Query: 1325 ----------KAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT--PDKLELP 1372
                      + PKALGD+ ES+ GA+ +D+ ++LD VW+++  ++   +    +K+   
Sbjct: 1733 VVETEEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMMKSEIEQFSNKVPKS 1792

Query: 1373 PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQL 1432
            P+REL+EL      F K      G  V   + +  K V    +G  R+ + AK  AA   
Sbjct: 1793 PIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGVF---KGIGRNYRIAKCTAAKCA 1849

Query: 1433 LKKLE 1437
            LK L+
Sbjct: 1850 LKNLK 1854



 Score = 44.3 bits (103), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 14/156 (8%)

Query: 903  DAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 958
            D +  +D VV+  +  +     + + EI +N +  S F G+   D  TF  Y+  KY I 
Sbjct: 880  DPEKYRDAVVMPWYRNQDQPQYFYVAEICSNLNPASDFPGS---DYATFEEYYLRKYSIQ 936

Query: 959  LIHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELL 1012
            + +  Q LL +  +    N L     N  G     S + +K     K  Q  + + PEL 
Sbjct: 937  IQNKSQHLLDVDHTSARLNFLTPRYVNRKGVALPTSSEATKRAKREKLEQKQI-LVPELC 995

Query: 1013 VRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
                   S+ +    LP ++ R+ +L+LA Q+R  +
Sbjct: 996  AIHPFSASLWRKAVCLPCILYRINALLLADQIRRTV 1031


>gi|270015102|gb|EFA11550.1| dicer-1 [Tribolium castaneum]
          Length = 1835

 Score =  157 bits (397), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 173/738 (23%), Positives = 319/738 (43%), Gaps = 123/738 (16%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK-SNGFKKLIIFLAPT 102
           F PR YQ+++ + AK+RNTI      + K  I + L+++ +  ++  +G + L +   P 
Sbjct: 14  FTPREYQVELLDSAKKRNTIVCSSASSAKAFITIKLLQEFSHKMRVPHGKQALFVLDGPN 73

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V ++      +++ TD  V        +D+ ++      +  ++V+V T ++ +   +K 
Sbjct: 74  VPIMTSH---VKLLTDLTV------TSIDKEENP---PSLKASNVIVTTAEVCVLLCKKN 121

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDC 222
           F+ LD    IVID C +        +IM  +      +P++ G+TA  +  +     +  
Sbjct: 122 FVHLDSYALIVID-CLYGGQQSLVREIMARYQAIQAPRPRILGLTAGLLGSEMQPDRL-- 178

Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD 282
           E ++  LE  L S V T    +E+   +   + SCR  ++   C   +   L+    K  
Sbjct: 179 EAELQRLEKLLSSSVDT---SSEILTLI---RLSCRPRERIVECFKPIPSPLQ---DKIK 229

Query: 283 ASLSK----LQGSQLNCYKDMDDKHKTLRKQLSD-------YHAKILYCLDELGLICAYE 331
           A+++     L+  + +  +  DD      KQ+ D       +    L  LD+LG   A  
Sbjct: 230 ATITSCQDFLKDHRYDPSEIYDDDLLEEFKQVPDPKEQPLSFFDDFLEILDDLGPWSADR 289

Query: 332 AVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF-DYSKAV 390
           A    L K+ K + +    R   L C          + S++ ++ +   +  F DY+   
Sbjct: 290 AAYGMLIKIEKLKVKVPYERHYLLLC----------VASSVLVSIRALCELEFQDYTDKE 339

Query: 391 DLGYIST-KLHELLQL-------------------------------------FLSFGKS 412
            +   ST K+   LQ+                                     ++S  +S
Sbjct: 340 KVFRFSTPKVLRFLQVLKQFKPTGDKPETCDKLPDLKDPKKGKGKNYKGPRRPYISRAQS 399

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT-SVDALTPKV-------- 462
            ++LC ++FV+    A   E     +  ++     Y   S + SV+ +   V        
Sbjct: 400 DEMLCALVFVKNRYKA---EALFALLCVMSKSDEEYWWVSVSFSVNKIADPVREPREAES 456

Query: 463 ----QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518
               Q+EVL  +R  + N++ AT  +E+G  +P C+ VIRFDLP++  SYI S+ RAR +
Sbjct: 457 EHKRQEEVLRKYRSHECNIMIATSALEQGCDLPKCNLVIRFDLPQSFHSYIHSKARARAN 516

Query: 519 NSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSR------DPEACFLKACTYVKTKSY 572
            + F+L+    N  + +   + +     V +T L R      D     +   + ++ + Y
Sbjct: 517 EAHFLLL---ANENEVSDFVENLAEYNEVENTLLKRCYSLEPDKNEELVADASSLQCRPY 573

Query: 573 --IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPF 630
               E    SV+  +++ L++RYC  LPSD +    PI+  +  E  Y C + LP N+P 
Sbjct: 574 QPSAEPGANSVSLSNAIALVNRYCAKLPSDTFTRLTPIWHEEKVENGYICSIRLPINSPV 633

Query: 631 -QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP--------SVEEPSENNLISK 681
            +T+  P   N  L+++      C+ LH+ G L+D+L P        + E+ + + L   
Sbjct: 634 KKTVTSPPMINTLLARRAAAFMICQLLHKAGELDDNLQPIGKENFKVNEEDWNSSALEES 693

Query: 682 KNESL-PGAGTTKRKELH 698
             E+L P  GTTKR++ +
Sbjct: 694 DEENLDPRPGTTKRRQYY 711



 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 202/485 (41%), Gaps = 120/485 (24%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            +++L+ALT     +  ++ERLE +GDS LKYA++ +L+  Y   HEG+LS  RS  V N 
Sbjct: 1353 NVLLQALTMSNANDGINLERLETIGDSFLKYAITNYLYSKYENVHEGKLSHLRSKQVSNL 1412

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVPCECGVDTLEVPLDGKF------ 1172
             L++LG  + L  Y+  + FDP   W+ P       VP E      E  +D +F      
Sbjct: 1413 NLYRLGRRKGLGEYMIATKFDPHDNWLPPCFY----VPKELE----EALIDAQFPANCWT 1464

Query: 1173 ---FTQDTKVVVGKPCDM-------------------GHRWMGSKTIADCAEALIGAYYV 1210
                     + +   C M                       +  K+IADC EALIGAY +
Sbjct: 1465 VADMAATRDMTLDDICSMVRQRGESLSLSNIIPYNLVTQHSIPDKSIADCVEALIGAYLI 1524

Query: 1211 GGGLIAALYMMKWLGIDA--DLEVSLVDDC-ITRASLRSYV--PR------INEIKDIES 1259
              G   AL  M WLGI     LE     +  + ++ L +++  PR      ++     E 
Sbjct: 1525 ECGPRGALLFMAWLGIRVLPQLEDGTYGEIELPKSPLSNHLTYPREELDMLLDGYDQFER 1584

Query: 1260 KIGYEFTVKFLLQEAITHASVQEFY---CYQN------------LYKHLQHCSTL----- 1299
             IGY+F  +  L +A+THAS        CYQ             + +HL   + +     
Sbjct: 1585 HIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTRMHSPGA 1644

Query: 1300 -----------------------------LLSQITEYVKSFPKPGETTDSGPSM------ 1324
                                         L   + E V+ F +  E  DSG ++      
Sbjct: 1645 LTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQE--DSGHTLVDELYL 1702

Query: 1325 ----------KAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT--PDKLELP 1372
                      + PKALGD+ ES+ GA+ +D+ ++LD VW+++  ++   +    +K+   
Sbjct: 1703 VVETEEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMMKSEIEQFSNKVPKS 1762

Query: 1373 PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQL 1432
            P+REL+EL      F K      G  V   + +  K V    +G  R+ + AK  AA   
Sbjct: 1763 PIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGVF---KGIGRNYRIAKCTAAKCA 1819

Query: 1433 LKKLE 1437
            LK L+
Sbjct: 1820 LKNLK 1824



 Score = 44.3 bits (103), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 14/156 (8%)

Query: 903  DAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 958
            D +  +D VV+  +  +     + + EI +N +  S F G+   D  TF  Y+  KY I 
Sbjct: 880  DPEKYRDAVVMPWYRNQDQPQYFYVAEICSNLNPASDFPGS---DYATFEEYYLRKYSIQ 936

Query: 959  LIHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELL 1012
            + +  Q LL +  +    N L     N  G     S + +K     K  Q  + + PEL 
Sbjct: 937  IQNKSQHLLDVDHTSARLNFLTPRYVNRKGVALPTSSEATKRAKREKLEQKQI-LVPELC 995

Query: 1013 VRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
                   S+ +    LP ++ R+ +L+LA Q+R  +
Sbjct: 996  AIHPFSASLWRKAVCLPCILYRINALLLADQIRRTV 1031


>gi|156032684|ref|XP_001585179.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980]
 gi|154699150|gb|EDN98888.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1867

 Score =  157 bits (396), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 145/514 (28%), Positives = 227/514 (44%), Gaps = 59/514 (11%)

Query: 183  NHPYTKIMKEFYHKSDNKP----KVFGMTASPV-VRKGVSSAMDCEGQISELESTLDSQV 237
            +HPY +I+K+FY    ++P    K+FGMTASPV  R  +  A +      ELE  L SQ+
Sbjct: 560  DHPYARIIKDFYRSDTDEPISLPKIFGMTASPVDARDNIKKAAE------ELEGLLHSQI 613

Query: 238  FTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYK 297
             T  D + M+  +    E+  FYD    C             +F   L  L+   L    
Sbjct: 614  CTAVDPSLMQYSIKGKPETIAFYD----CLG----------PRFHTPLY-LKMLPLLEEN 658

Query: 298  DMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVL-------KAQEECEIY 350
             +  K     K+ S       +C D++   C  E     L+          K  E  E+ 
Sbjct: 659  PIFQKPFIFGKEASRTLGS--WCADQIWTFCLQEEESKKLQAKTEQAHHSKKVPEPLEVL 716

Query: 351  RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS-F 409
             +   Q +     V   I      A K+  DF      + +L   STK+  LL +    F
Sbjct: 717  EERKEQLQEAKSIVKDHIFEPPHFASKLSDDFATKVHYSTNL---STKVVALLSILKDRF 773

Query: 410  GKSTQVLCIIFVERIIAAKVVERFVKK----VPFLTHLTVAYLTGSTTSVDA---LTPKV 462
             + T   CI+FV     A+++   +       PFL    VA L G+T++      +T + 
Sbjct: 774  QRPTNDKCIVFVRERYTARLLASLLSTPEAGTPFLK---VAPLVGTTSTSAGEMHITFRS 830

Query: 463  QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
            Q   +  FR GK+N L AT V EEG+ +P+C+ V+RFDL  TV  YIQSRGRAR  NS++
Sbjct: 831  QTLTMHDFRNGKINCLIATSVAEEGLDIPDCNLVVRFDLYSTVIQYIQSRGRARHVNSRY 890

Query: 523  ILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTY---------VKTKSYI 573
              M+E  N +QR  + ++++ E+ +   A S  PE   L    +            + Y 
Sbjct: 891  YHMVESHNEEQRRTIKEVLKHEKLLKHFA-SALPEDRKLTGNNFNMDYFLRKERTHRVYT 949

Query: 574  VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTI 633
            V  + A +T   S+ ++  + + LP  +    +  +   +  + + CE+ LP  AP +  
Sbjct: 950  VPGSNAKLTYRMSLTVLSAFVDSLPQAQDSALRVDYVVTTVNKQFICEVILPEEAPIRGA 1009

Query: 634  VGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
            +G  +  K ++K     E C  LHQ G ++  LL
Sbjct: 1010 IGRPATTKQVAKCSAAFETCVILHQKGYIDQFLL 1043



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 156/386 (40%), Gaps = 83/386 (21%)

Query: 1020 SVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT------------ 1067
            +VV   YLLP+++ R+ES ++A +  + ++   R       L LEA+T            
Sbjct: 1344 TVVAMAYLLPAIIHRVESYLIALEATDLLHLDIR-----PDLALEAVTKDSDNSEEHGEE 1398

Query: 1068 ----TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHK 1123
                  G   ++  ERLE LGD  LK   S  L+   P   E +    R   +CN  L  
Sbjct: 1399 QTNFQRGMGNNY--ERLEFLGDCFLKMGTSISLYGLNPDSDEFRYHVDRMCLICNKNLFN 1456

Query: 1124 LGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGK 1183
                 +L  +IR +AF+ R W   G   LR                GK  T         
Sbjct: 1457 TALKLELYRFIRSAAFNRRAWYPEGPELLR----------------GKTATAPNT----- 1495

Query: 1184 PCDMGHRWMGSKTIADCAEALIGA----YYVGGGLIAALYMMKWLGIDADLEVSLV-DDC 1238
                 H+ +G K+IAD  EA+IGA    ++    +  A+  +  + +++D   ++V  D 
Sbjct: 1496 -----HK-LGDKSIADVCEAMIGAALLSHHESKSMDNAVRAVTEV-VNSDNHKAIVWSDY 1548

Query: 1239 ITRASLRSY------VPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKH 1292
                    Y        +I+  + +E+K  Y F    LL+ A TH +    Y     Y+ 
Sbjct: 1549 YKLYQKPKYQTAVATAAQIDLARQVETKHPYHFKYPRLLRSASTHPAYPFSYEQIPSYQR 1608

Query: 1293 LQHCSTLLLSQITEYVKSFP---------------KPGETTDS-GPSM-----KAPKALG 1331
            L+     LL  + + V  +                + G++ D   P       + PK L 
Sbjct: 1609 LEFLGDALLDMVQKMVAEYACDINEALIQAKADAKRAGKSEDDYAPDYWITVRQPPKCLP 1668

Query: 1332 DLLESIVGAVLIDTKLNLDEVWRIFK 1357
            D++E+ +GA+ +D++   +EV + F+
Sbjct: 1669 DMVEAFIGAIFVDSEYKFEEVEKFFE 1694



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 33/38 (86%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDI 83
           PR YQL++FE AK++N IAVL+TG+GKT IAV+L++ I
Sbjct: 501 PRDYQLELFEKAKKQNLIAVLDTGSGKTFIAVLLLRYI 538


>gi|154282055|ref|XP_001541840.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150412019|gb|EDN07407.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1437

 Score =  157 bits (396), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 166/664 (25%), Positives = 292/664 (43%), Gaps = 83/664 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F PR YQL++ E + R N I  ++TG+GKT +A++ I+     +++    K + FL PTV
Sbjct: 45  FKPRAYQLEMLEASLRENIIIAMDTGSGKTQVAILRIR---HELETCAAHKFVWFLTPTV 101

Query: 104 HLVHQQYDVIRVH-TDFEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRK 161
            L  QQ+  I    + +E     G+  V+ W ++  W   +    ++V TPQ+LLDA+  
Sbjct: 102 ALAEQQHKNISQQLSAYETRLLLGSDNVNYWSTKKIWDDILLNIRIVVSTPQVLLDAMTH 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            F+++  +  +V DE                            GM  S       +SA  
Sbjct: 162 GFVTMPQIALLVFDE----------------------------GMFPSHGCYMYCTSA-- 191

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFC-GSD-LKGKLEV--- 276
               IS +E  L+++  T     E  +      E C    Q  +  GSD L+   E+   
Sbjct: 192 --NWISAIEDNLNARCETPRIHREELMRYVHRPELCTVNFQEDYSLGSDILRSLYEILQA 249

Query: 277 ------SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330
                  W K +    K Q SQ N    ++ +      Q+S    + +   ++LG   A 
Sbjct: 250 VDMEQDPWIK-NLRQQKDQRSQKNLLNALEKRKTFCMAQMSKLLRQAVSIHEDLGQWAAD 308

Query: 331 EAVKICLEKV--LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLA-DKIFLDFGFDYS 387
             +   L+++   +A++  +I      +   F+ E L    S LP+   K + D   D  
Sbjct: 309 AFISEVLKRLETKRARQPTDILDTLERKEANFVFETL----SQLPIQPGKQYWDSEPDR- 363

Query: 388 KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVA- 446
                  +S K + L+ L L    ++    I+F ++     ++   + + P L H  V+ 
Sbjct: 364 -------VSGKANLLIDL-LEREYTSDFTGIVFAQQRSTVTMLAHLISRHPRLKHKFVSG 415

Query: 447 -------YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
                  Y   ++T ++    K QK  ++  R GK NLL AT V+EEG+ V  C  V+ F
Sbjct: 416 AFLGDSGYAGRTSTIIELHDLKTQKGSIDDLRSGKKNLLIATSVLEEGIDVSACHLVVCF 475

Query: 500 DLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC 559
           D    + S+IQ RGRAR+  S+F++ L   +  Q  K   +    +S+ +  + R  +  
Sbjct: 476 DTISNLRSFIQRRGRARKERSKFVMFLNGDDNSQGKKWTKMEDVMKSMYEEDMRRLEDVW 535

Query: 560 FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-- 617
             +       +   +ESTGA +T +++   +  +C  L  + +   +P+F ++  E    
Sbjct: 536 AKENVEEESDEDRRIESTGALLTFENARPHLEHFCATLQCE-FTDTRPVFMFRENELGGM 594

Query: 618 YECELTLPS--NAPFQTIVGPT-SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SV 670
              ++ LP+  +  F+ I G    R + L+++    +A  KL+Q G +NDHLLP    ++
Sbjct: 595 VTAKVLLPNVLDPKFRVIKGSKWWRTEKLAQRDAAFQAYLKLYQEGLVNDHLLPVHCMAM 654

Query: 671 EEPS 674
           E P+
Sbjct: 655 EHPA 658



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 112/277 (40%), Gaps = 55/277 (19%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPS-SLILEALTTLGCCESF 1075
            +P+       L PS++  +E  ++A +L + I    R       SL++ A++     E+ 
Sbjct: 887  LPLEYSMFALLAPSIIHNVEIYLIAEELNKTI---LRPIAFTDLSLVITAISASVAREAT 943

Query: 1076 SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIR 1135
            + +R+E LGDS+LK+  +  L  T    HEG LS  +   V N  L     +  L  +I 
Sbjct: 944  NYQRIEFLGDSILKFQTTLQLTATNLIWHEGLLSRAKDTVVSNKRLSYAAIEAGLDKFIL 1003

Query: 1136 DSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSK 1195
               F   +W  P              D LE    G                +  R M +K
Sbjct: 1004 LDVFTGAKWRPP-----------YNKDHLESEEQG----------------VAQREMSTK 1036

Query: 1196 TIADCAEALIGAYYVGGGLIAA-------LYMMKWLGIDADLEVSLVDDCITRASLRSYV 1248
            T+AD  EAL+ A  + GG   A       L  ++W+ ++  +            +L S V
Sbjct: 1037 TLADVVEALLAAATLDGGQRKAEKCLEIFLPEIQWMPLEDRVN-----------ALYSSV 1085

Query: 1249 PRINE------IKDIESKIGYEFTVKFLLQEAITHAS 1279
            P   E       +++ES +GY F  K  L +A TH S
Sbjct: 1086 PEAYENTLTSWFQEVESLVGYVFNKKVFLVQAFTHPS 1122


>gi|189199432|ref|XP_001936053.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983152|gb|EDU48640.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 1439

 Score =  154 bits (389), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 177/700 (25%), Positives = 314/700 (44%), Gaps = 69/700 (9%)

Query: 23  MGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK- 81
           M S  H  +    S ++    F  R YQ ++ E + + N I V++TG+GKT IA+   + 
Sbjct: 1   MDSPMHVDSTATASGASPCETFQLRAYQAEMVEESMKANIIVVMDTGSGKTHIAIERTRA 60

Query: 82  DIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQ-CWQ 139
           ++          K++ FLAPTV L  QQ++V   +   F  +   G   ++ W +Q  W 
Sbjct: 61  ELETCQPDKPTWKIVWFLAPTVSLCEQQHEVFLSNLPGFGHQILCGRDDIEFWTTQRHWD 120

Query: 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----H 195
             +    ++V T Q+LL+AL   F+ L  +  ++ DE HH T NHP  ++M  FY    H
Sbjct: 121 SILTNVRIVVSTHQVLLEALTHGFVKLTKLALLIFDEAHHCTLNHPANQLMTNFYMPQLH 180

Query: 196 KSDNK-PKVFGMTASPVVRKGVSSAMDCEGQISELESTLD------SQVFTIEDKTEM-E 247
            + N  PKV G+TASPV+ K V++    E     L +T        S++     + E+ +
Sbjct: 181 DNRNSLPKVLGLTASPVM-KAVATRQGLELIEQNLHATAKTPKLHRSELMRYVHQPELVQ 239

Query: 248 VFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLR 307
           +  PS+     +        S L   L+ ++  ++        + L+ +    D  + L 
Sbjct: 240 IAYPSSPAGTHY--------SQLLLALQEAYETYNLQRDPYVIALLDQHSKGYDVSRQLN 291

Query: 308 KQLSDYHAKILYCLDELGLI------CAYEAVKICLEKVLKA-----QEECEIYRQSSLQ 356
           K  S   ++  YC D+L  +       A E     +E  L+      ++   I+ Q  L 
Sbjct: 292 KLWS---SRKTYCYDQLKQLKNKAEAMADELGTSVMEGYLRQCIATFEKMAGIFDQQLLD 348

Query: 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKST-QV 415
                 + L  +    PL +   +  G        L  +S K++ L+   ++  +     
Sbjct: 349 LSTNERQHLLNVFKRFPLHNPSSVSDGI-------LDNLSQKVNILVDTLVAEAEGNPDF 401

Query: 416 LCIIFVERIIAAKVVERFVKKVPFLTH-LTVAYLTGSTTSVDALT-------PKVQKEVL 467
             ++FVE+ +    +   +   P   H L V    G++ S    +       PK Q+  L
Sbjct: 402 TGLVFVEQRVWVASLAEILTCHPRTKHLLRVGTFVGTSQSSKRKSNISVFAEPKNQQTTL 461

Query: 468 ESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE 527
           + FR G +NL+ AT V+EEG+ V +C  VI F+ PK + S++Q RGRARQ  S++++ + 
Sbjct: 462 DDFRAGIINLVLATSVLEEGIDVSSCHLVICFEQPKNLKSFVQRRGRARQQRSRYLVFVP 521

Query: 528 RGNLKQRNKLFDIIRSE--RSVTD----TALSRDPEACFLKACTYVKTKSYIVESTGASV 581
             +  Q  K +  + +E  R+  D      L+++ E        +++     +ESTGA +
Sbjct: 522 DNSNVQSVKSWQSLEAEMRRAYEDDKRKVRLAQEQEQVDEYGERHLR-----IESTGALL 576

Query: 582 TTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVG---PTS 638
           T +++   +H +C  L S  Y    P F +         ++TLP +   +        T 
Sbjct: 577 TLENASQHLHHFCARLGSGTYANITPEFDFTHDRGQITAKVTLPISVDPKVRTARSLKTW 636

Query: 639 RNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNL 678
             + ++++ V  EA + L+    +ND+LLP V +  E+ +
Sbjct: 637 VTERMAQKDVAFEAYKALYHTKLVNDNLLP-VRDDEEDQM 675



 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 120/269 (44%), Gaps = 35/269 (13%)

Query: 1016 DVPISVVKSLYLLPSVMQRLESLMLASQLREEI--NCHSRNFHIPSSLILEALTTLGCCE 1073
            ++P+S      L PS++ +LE  ++A  LR  +       N H+P  +++ ALT+    E
Sbjct: 914  NLPVSYAIFGLLFPSIVHKLEIYIVADTLRTTLLNPVEVDNLHLP--ILVTALTSSALNE 971

Query: 1074 SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGY 1133
                +RLE LGD +LK+  S HL     +  EG L+ ++   V N  L +      L  Y
Sbjct: 972  GNDYQRLEFLGDCILKFIASLHLMAANLQMPEGMLTGKKGKLVSNGYLARATLAAGLDQY 1031

Query: 1134 IRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMG 1193
            I    F   +W        RP                ++ +Q    V+ +      +   
Sbjct: 1032 IFHKRFTGAKW--------RP----------------RYISQ----VLAESTLPEKQEKS 1063

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMK-WLGIDADLEVSLVDDCITRASLRSYVPRIN 1252
            SK IAD  E+LIGA Y+ GG   A   ++  L ++    +S   D +  A+   +   + 
Sbjct: 1064 SKLIADVIESLIGASYIIGGFPKAFACVQTLLPLERWTPLSEAKDILYDAA--PHQDTVM 1121

Query: 1253 EIKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             +  +E  +GY+FT K LL EA+TH + +
Sbjct: 1122 SLGLVEKLLGYKFTNKALLLEALTHVTFR 1150


>gi|449295521|gb|EMC91542.1| hypothetical protein BAUCODRAFT_570103 [Baudoinia compniacensis
           UAMH 10762]
          Length = 1569

 Score =  154 bits (388), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 90/230 (39%), Positives = 132/230 (57%), Gaps = 12/230 (5%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK---DIAQAIKSNGFK-KLIIFLAP 101
           PR YQ ++F+ A++ NTIAVL+TG+GKT+IAV+L+K   D+    ++ G + ++  FL  
Sbjct: 87  PREYQWELFQRAQKSNTIAVLDTGSGKTLIAVLLLKWIIDVELERRATGEQPQIAFFLVA 146

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V LV+QQ  V++ + D  V    GA GVD W    W K   +N V+V T  +L   L  
Sbjct: 147 SVTLVYQQLAVLQQNLDHPVARVCGADGVDNWSKARWMKLFVENKVIVATADVLHACLAH 206

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSSA 219
           +F+S+  +  ++ DE HHA  NH Y +I+K+FY   D   +P++FGMTASP     + + 
Sbjct: 207 SFISMKQISLLIFDEAHHAKKNHAYARIVKDFYLSEDEGRRPRIFGMTASP-----IDAK 261

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269
            D     SELES L SQ+ T  D + +E  V   KE    YD     GS+
Sbjct: 262 TDVVQAASELESLLHSQIATTADMSLVEA-VKKPKEHVFQYDALPTTGSE 310



 Score =  140 bits (353), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 145/281 (51%), Gaps = 18/281 (6%)

Query: 403 LQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKK--VPFLTHLTVAYLTGSTT---SV 455
           L+ FL+  F   +   CI+FVER   A+++    K+  VP   +L   +L G+       
Sbjct: 446 LKRFLAPEFETPSSRRCIVFVERRHTARLLSATFKRFGVP---NLRPGFLVGANNPEMDE 502

Query: 456 DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
           D  T  +Q   +  FR G++N LF T V EEG+ +P+C+ VIRFD+ +T+  Y+QSRGRA
Sbjct: 503 DNFTTPMQVLTMAKFRSGEINCLFCTTVAEEGLDIPDCNLVIRFDMYRTMIQYVQSRGRA 562

Query: 516 RQHNSQFILMLERGNLKQRNKLFDIIRSERSVT-------DTALSRDPEACFLKACTYVK 568
           RQ NS+F+ M+E+GN      L  +   ER++        +       E       T  K
Sbjct: 563 RQRNSKFLHMVEKGNSVHAELLLQVRAQERAMRRFCQLLPENRRLYGNEGILETLMTKEK 622

Query: 569 T-KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSN 627
             ++YI ESTG  +T  +++  +  +   +P+D     +P +   S  E +  E+ LP N
Sbjct: 623 ALRTYIEESTGTKLTYGNALVCLANFISSIPTDTDDMLQPTYIVNSHGEKFVAEVLLPGN 682

Query: 628 APFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
           AP ++ +G     K L+K     EAC +L +   L++HL+P
Sbjct: 683 APIRSAIGKVCTKKLLAKCSAAWEACRELRRKEYLDEHLMP 723



 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 96/221 (43%), Gaps = 50/221 (22%)

Query: 1009 PELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI--NCHSRNFHIPSSLILEAL 1066
            PE L    +P +V  S +  P+++ RLES ++A +  + I  +C  +       + L A+
Sbjct: 1006 PEPLRISALPPAVATSCFAWPAIIHRLESYLIALEASKMIGVDCSPQ-------MALAAM 1058

Query: 1067 T-----------------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLS 1109
            T                   G  E++  ERLE +GD+ LK A S   F+  P  +E +  
Sbjct: 1059 TKDSDNSGDHDKQEHINFQHGMGENY--ERLEFIGDTFLKTATSISTFIQNPNDNEFEFH 1116

Query: 1110 ARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLD 1169
             +R   +CN  L  +  + KL  Y+R  AF  R W   G L L               L+
Sbjct: 1117 VKRMLMLCNQNLFNVAKELKLYEYVRSIAFSRRLWYPEG-LKL---------------LE 1160

Query: 1170 GKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYV 1210
            GK   +  +  V K        +G KTIAD  EALIGA YV
Sbjct: 1161 GKGANKQEETSVIKHS------LGEKTIADVCEALIGAAYV 1195


>gi|345571082|gb|EGX53897.1| hypothetical protein AOL_s00004g556 [Arthrobotrys oligospora ATCC
           24927]
          Length = 1587

 Score =  153 bits (387), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 129/226 (57%), Gaps = 11/226 (4%)

Query: 36  SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ----AIKSNG 91
           S++  +I   PR YQL++FE AK  NTIAVL+TG+GKT+IA +LI+ + +      KS  
Sbjct: 152 SNTAKAIITDPREYQLELFERAKMDNTIAVLDTGSGKTLIATLLIRWMLELELEERKSGR 211

Query: 92  FKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMT 151
             K+ +FL  +V LV QQ  V+  + D +V +Y G  G D W    W   +  + ++V T
Sbjct: 212 SPKVCVFLVNSVTLVFQQAAVLECNLDAQVGKYCGDMGTDLWTKSQWDARLKSDRIIVAT 271

Query: 152 PQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKSDNKPKVFGMTAS 209
             IL + L  +F+ +  +C ++ DECHH    H Y +IM++FY   K +N+P++FGMTAS
Sbjct: 272 ADILWNCLTHSFIRMSDICLLIFDECHHTKKQHAYARIMRDFYETEKEENRPRIFGMTAS 331

Query: 210 PVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE 255
           P     V + +D      +LE  + S++ T  +   M  F+P  +E
Sbjct: 332 P-----VDARVDPVKAAHQLERLMHSRICTTSNPAYMRKFLPRPEE 372



 Score =  150 bits (378), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 162/294 (55%), Gaps = 20/294 (6%)

Query: 393 GYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH-----LTVA 446
           G  S KL  LL+  + +F +  +  CIIFV R   A+ ++   KKV F+ H     + + 
Sbjct: 487 GSFSPKLFILLRFLVHAFDQHPEYKCIIFVTRRHTAQCIQAIFKKV-FIQHGRDHLIRLG 545

Query: 447 YLTGSTTS--VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
            L GS+     D++T + Q   L  F+ G  N L AT V EEG+ VP+C+ VIRFDL  T
Sbjct: 546 TLVGSSGQHGTDSMTFRAQTLALHRFKKGVTNCLIATAVAEEGLDVPDCNLVIRFDLYDT 605

Query: 505 VSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFL--K 562
           +  Y+QSRGRAR   S +I M+E+ N   +  + D   +E+ +     S+ PE   L  +
Sbjct: 606 MIKYVQSRGRARHATSTYIHMVEQNNWTHKRMVQDGQEAEK-IMKEFCSKLPEDRLLDKQ 664

Query: 563 ACTYV------KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE- 615
           A T +         +YIV  TGA +T +SS+ +++++ + L +++    + +     A+ 
Sbjct: 665 APTDIFGPDPTDDMTYIVPETGAKLTLNSSMQILNQFADHLGTEEGIASEHVMYIVQAQP 724

Query: 616 -EAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
              ++CE+ +P  +P ++++G T+R+K  +K+    EAC+KLH    L+D+L+P
Sbjct: 725 GHGFKCEVKMPEISPIRSVLGDTARSKGAAKRHAAFEACKKLHHGKYLDDYLMP 778



 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 119/505 (23%), Positives = 186/505 (36%), Gaps = 130/505 (25%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTT----------------LG 1070
            L P+++ R+++ + A  +     C      I   L LEA+T                  G
Sbjct: 1077 LFPAIITRIDAYLQAYDV-----CKLFKVQIDLELALEAITKDSDNTQEHDEEPQNKRRG 1131

Query: 1071 CCESFSMERLELLG----DSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
               ++  ERLE LG    +  LK   +  L+ T P + E      R   VCN +L++   
Sbjct: 1132 MVTNY--ERLEFLGGELNNCFLKLGTTIALYSTNPDQDEFAYHVERMVLVCNRSLYERAV 1189

Query: 1127 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD 1186
            + +L  YI+   F  R W     L                 + GK         VGK   
Sbjct: 1190 ELELYKYIQSEGFSRRLWYPMITL-----------------IKGK--------AVGKTES 1224

Query: 1187 MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRS 1246
                 +  K++AD  EALIGA   GGGL  A  M+  L   +  +V+   D  +  +L  
Sbjct: 1225 QRTHRLSDKSMADVCEALIGASLCGGGLDMAARMVTTLVNKSIHKVNSFKDYYSLYTLPE 1284

Query: 1247 Y-VPRIN----EIKD-IESKIGYEFTVKFLLQEAITHASVQEFY----CYQNL------- 1289
            Y +  +N    E+ D IE  +GY+F    LL+ A TH S    +    CY+ L       
Sbjct: 1285 YQIGPVNASQQELADKIERDMGYKFKYPRLLRSAFTHPSFPTMWEKIPCYERLEFLGDAL 1344

Query: 1290 -------------------------------------------YKHLQHCSTLLLSQITE 1306
                                                       + HL+     + S + E
Sbjct: 1345 IDMACVEDLWERFPGKDPQWLTEHKMSMINNRFQGALSVKLKFHTHLRAMGAHINSAVQE 1404

Query: 1307 YVKSFPKPGETTDSG-----PSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILS 1361
            YV+   +    ++        + + PK L D+LE+ VGA+ +D+  N D V   F+  + 
Sbjct: 1405 YVQLIEEARIASNDSVDYWIDAKQPPKVLPDILEAYVGAIFVDSGFNYDVVTSFFRTHVR 1464

Query: 1362 PIVTPDKL-----ELPPLREL----IEL-CDSLGYFVKENCTLKGEMVHAELRLQLKDVL 1411
            P  T   +        P+  L     EL C     F KE        V + +    K   
Sbjct: 1465 PFFTDMSIFDSFAGNHPVTHLTTRMTELGCSDFRIFSKEYKDRDKSYVLSVVIFHDK--- 1521

Query: 1412 LVGEGQERSRKAAKGKAASQLLKKL 1436
            ++ EG+  S+K ++  AA   L+KL
Sbjct: 1522 ILAEGKASSKKNSRTNAAKHSLEKL 1546


>gi|443728415|gb|ELU14771.1| hypothetical protein CAPTEDRAFT_209996 [Capitella teleta]
          Length = 985

 Score =  153 bits (387), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 151/518 (29%), Positives = 243/518 (46%), Gaps = 55/518 (10%)

Query: 47  RIYQLKVFE-VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQL++   V   +N++ V  TG GKT +A  +IK   Q +  N   K +IFL PTV L
Sbjct: 293 RSYQLELVNGVGDVKNSLIVAPTGCGKTFVAAEIIK---QHMVKNPNSK-VIFLVPTVAL 348

Query: 106 VHQQYDVIRVHT--DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
           V QQ+DV++ ++  D  ++   G            +  I +++++VMTPQIL++A   A 
Sbjct: 349 VQQQHDVLQSYSIPDARIKPISGEGS----QINPLKNLIQRHNIMVMTPQILVNACDHAS 404

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-----KSDNKPKVFGMTASPVVRKGVSS 218
           L    +  ++ DECHH+   HPY+KIM   YH     +    P++ GMTAS  V K  + 
Sbjct: 405 LLSFGIGLLIFDECHHSMKEHPYSKIMA-LYHDLKPLEGKMPPRIVGMTASVGVGKAKNE 463

Query: 219 AMDCEGQISELESTLDSQVFTIED-KTEMEVFVPSAKESC-----RFYDQSKFCGSDLKG 272
             D    I  L + +D+ + ++ D K ++   V   +E+      R  D    C  ++  
Sbjct: 464 D-DAIKHIIRLLANMDAHLVSVVDCKEDLAFCVNKPQENLVYLKKRNSDPFYVCIHEIMV 522

Query: 273 KLEVSWSKFDASLSKLQG--SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE-----LG 325
            +E     ++  L+K Q    +    K   +K   L KQ     AK L    E       
Sbjct: 523 TIENRIENYNKDLTKAQARLGKQEQIKPPAEKGSLLYKQWHSAFAKRLIVNVENESFHFD 582

Query: 326 LICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLAD--------- 376
           L+C  E +KI  + +L    +C    +S    +Y  E+V H++       D         
Sbjct: 583 LVCCAEYLKIYNDALL-INSDC----RSLDALEYLKEKVKHLLEMRNRNRDQDSDRIHIK 637

Query: 377 ----KIFLDFGFDYSKAVD-LGYISTKLHELLQLFLSFGKSTQVL-CIIFVE-RIIAAKV 429
               K++ D   D  +  D     + KL  L +  L   +  + + C++F + R I + +
Sbjct: 638 QWLAKLYTDKVEDLERFCDDPNNANPKLETLKKYILKKKREEEPMRCMVFCQTREICSSL 697

Query: 430 VERFVKKVPFLTHLTVAYLTGSTTSVD--ALTPKVQKEVLESFRGGKVNLLFATDVIEEG 487
           V R+      L  L   +LTGS  + D   LT   Q +V++SF  G+  L+FAT V EEG
Sbjct: 698 V-RWANSTDGLVDLRATFLTGSNAAADKKGLTSSQQNDVIKSFANGRHQLIFATTVAEEG 756

Query: 488 MHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           + +  C  VIR+    ++++ IQSRGRAR+  + F L+
Sbjct: 757 LDIQACDNVIRYQYVTSMTARIQSRGRARKSEASFTLL 794


>gi|119190771|ref|XP_001245992.1| hypothetical protein CIMG_05433 [Coccidioides immitis RS]
          Length = 1435

 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 192/824 (23%), Positives = 335/824 (40%), Gaps = 126/824 (15%)

Query: 33  DGPSSSTNSINFIP----RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK 88
           DG S S  ++  +P    R YQL++   + R+N I  ++TG+GKT IA++ I+       
Sbjct: 75  DGTSKSQEAL--LPPRRARGYQLEMLSESLRQNIIVAMDTGSGKTEIAILRIQR------ 126

Query: 89  SNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVL 148
                                          E+E     K +       W   +    ++
Sbjct: 127 -------------------------------ELERCPAHKKI-------WDDILLNIRIV 148

Query: 149 VMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH------KSDNKPK 202
           + TPQ+LLDAL   F+ L  +  +V DE HH   + P  +IM++FYH       +D  P 
Sbjct: 149 ISTPQVLLDALSNGFVDLHTISLLVFDEAHHCVRDAPANRIMRDFYHYHRQEEGTDGLPH 208

Query: 203 VFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYD 261
           + G+TASP  R         +  +  LE  L++   T +  + EM  FV   +     Y 
Sbjct: 209 ILGLTASPTTRAR-------QTDLEVLEINLNAVCVTPKMHREEMMQFVHMPEYRSIEYQ 261

Query: 262 QSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCL 321
                 S +  KL V  ++ D     ++      +    +  K+ ++ L     K   CL
Sbjct: 262 PDVQNFSSIVEKLSVIINELD-----IENDPFVKFMRRRNDLKSRQRLLDALENKKTPCL 316

Query: 322 DELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALP-LAD---- 376
           D+L         K CL +      E   +       +  +        ++ P  AD    
Sbjct: 317 DQL---------KRCLRRSRVIHRELGPWASERFLTRCIMGLKSKQTNASGPQWADWDRE 367

Query: 377 --KIFLDFGFDYSKAVDLGY------ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAK 428
                L+       + ++G       +S K+H+L+  FL        + I+F E      
Sbjct: 368 DNSYMLNVLSQVVSSTEMGVQNPPDELSRKVHKLID-FLVLEHVNGSIGIVFAEERTIVI 426

Query: 429 VVERFVKKVPFLTHLTVAYLTGSTTSV-------DALTPKVQKEVLESFRGGKVNLLFAT 481
           ++ + +   P   H+      GS+ SV       +   P  Q   ++  R GK +L+ AT
Sbjct: 427 MLAQLLSLHPRTKHIKTTAFLGSSASVSRKSDITELHNPIDQSTAIDDLRTGKKDLIIAT 486

Query: 482 DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDII 541
            V+EEG+ VP C  VI FDLPK + S+IQ RGRAR+  S+F L L   +    ++L  + 
Sbjct: 487 AVLEEGIDVPICDLVICFDLPKDLRSFIQRRGRARKKGSKFALFLHSEDRATSSELHLM- 545

Query: 542 RSERSVTDTALSRDPEACFLKACTYVKTKSY---IVESTGASVTTDSSVNLIHRYCEMLP 598
             E+++    L        ++    V+ + Y    V STGA +T  ++ N +  +C  L 
Sbjct: 546 --EKTMKQLYLENKRALEHIQYLENVEEEGYDGFRVASTGALLTLSNARNHLSHFCGTL- 602

Query: 599 SDKYYTPKPIFKYKSAE-EAYECELTLPSN-----APFQTIVGPTSRNKNLSKQLVCLEA 652
           S ++    P F  +  +   +  ++ LPS        F+ I+    + + ++K+    +A
Sbjct: 603 SAEFIATDPEFVLEGDDTTGFSAKVILPSFLDPKLREFRGIL--LWKTEKMAKRDASFQA 660

Query: 653 CEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGE 712
              L++ G +ND+L+P+     + + + ++ E  P       K L    P  A++ +W E
Sbjct: 661 YVALYEAGLVNDYLMPAHHHIDDEDGL-EQVEKRPSFA----KALGSLNPWAAIAKKWRE 715

Query: 713 KCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQ 772
                 H Y+     S   + +   V+++  EL  D+ +F L  +    T+  +V   GQ
Sbjct: 716 AK----HFYQNLIEISAGAQAFPPMVMVLPVELPCDI-SFRL-FWNEHSTLLVSVKRGGQ 769

Query: 773 VHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRET 816
               AD +  A     +  + LF +  V      S  F  + E+
Sbjct: 770 -DFAADLIRLAADTTSILLSSLFSQKMVPGSLDFSWLFLPQMES 812



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 124/277 (44%), Gaps = 35/277 (12%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+   +    +P ++  +E+  +A++L + I  H   F    SL+L A+++    E+ +
Sbjct: 932  LPVEYSQFALFIPCLIHSIENYFIANELAQTI-LHPVGFS-NLSLVLTAISSSAAREASN 989

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +RLE LGDS+LK   S  L   +P   EG+L+ R+   V N  L        L  +I  
Sbjct: 990  YQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKGNIVSNGYLANAALQTGLDKFILT 1049

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
              F   +W        RP      ++T ++       T+ T            R M +K 
Sbjct: 1050 KPFTGAKW--------RPSYNTDHINTGDM-------TEPT------------REMSTKV 1082

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDC--ITRASLRSYVPRINE- 1253
            +AD  EALIGA  + GG    L  +K      D++ S +++C  I      S+    N  
Sbjct: 1083 LADVVEALIGAANIDGGENKILNCLKIFI--PDIKWSPLNECVNILHHQEDSFSDENNNM 1140

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHASVQ-EFYCYQNL 1289
            + +IE  +GY F  K LL  A+TH S +   + YQ L
Sbjct: 1141 LSEIEGLVGYTFKKKPLLLAAVTHPSSKGSGHSYQRL 1177


>gi|396464039|ref|XP_003836630.1| similar to dicer-like protein 2 [Leptosphaeria maculans JN3]
 gi|312213183|emb|CBX93265.1| similar to dicer-like protein 2 [Leptosphaeria maculans JN3]
          Length = 1393

 Score =  153 bits (387), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 153/663 (23%), Positives = 283/663 (42%), Gaps = 86/663 (12%)

Query: 61  NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH-TDF 119
           +T  V+ET  G+         ++ +         ++ FLAP+V L  QQY+V + +   +
Sbjct: 6   DTAIVVETSDGEPFRLRSYQTEMVEESLQQNIIVVVWFLAPSVTLCEQQYEVFKYNLPGY 65

Query: 120 EVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECH 178
            ++   G  GVD W  Q  W   ++   +++ T Q+LLDAL  AF+ +  +  ++ DE H
Sbjct: 66  GIQVLSGKDGVDHWTDQGTWDAVLHNVRIVLSTHQVLLDALTHAFVRMSKLALLIFDEAH 125

Query: 179 HATGNHPYTKIMKEFYH----KSDNK---PKVFGMTASPVVRKGVSSAMDCEGQISELES 231
           + T NHP  +IM +FY      +D K   PK+ G++ASPV++   +     +  + ++E 
Sbjct: 126 NCTLNHPARRIMSDFYKPFADAADPKSPVPKILGLSASPVMKAAAT-----KEALEQIER 180

Query: 232 TLDSQVFTIED-KTEMEVFV--PSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKL 288
            L +   T +  ++E+  FV  P   +            S L   L+     ++      
Sbjct: 181 NLRAIARTPKIYRSELMRFVHKPEVLQVSYPPPSPSDVSSPLLLSLQHILVTYEIKSDPY 240

Query: 289 QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE-- 346
               L   +D D+  K L K    + ++  YC         YE ++    K      E  
Sbjct: 241 MLELLQKQQDGDEVRKQLEKL---FVSRKTYC---------YEQIRTLASKAFDMTHEFG 288

Query: 347 ---CEIYRQSSL-QCKYFLEEVLHV---------------IGSALPLA-DKIFLDFGFDY 386
               E Y Q S+ Q +  ++   H                I  +LPL  D I        
Sbjct: 289 VSAMEWYLQQSMGQLREVVDMTSHQQLFDTAAREKQHLMRILESLPLPRDTI-------- 340

Query: 387 SKAVDLGYISTKLHELLQLFLS-FGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLT 444
             ++    +S K+  L+ L +S   ++     ++FVE R+  A + +         +   
Sbjct: 341 GSSISPSKLSHKVEMLIDLLVSELMENPDFFGLVFVEQRVFVAALAQILATHPQTQSLFR 400

Query: 445 VAYLTGSTTS-------VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
           V    G + S        +    + Q   L+ FR G+ NL+ AT V+EEG+ + +C+ V+
Sbjct: 401 VGTFVGESQSPKRKTNIANLAESRNQGATLDDFRAGRTNLMLATSVLEEGIDISSCNLVV 460

Query: 498 RFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSE--RSVTDTALSRD 555
            F+ PK + S++Q RGRAR+  S++ +   +G   + ++ +  + ++  R+  D      
Sbjct: 461 DFERPKNLKSFVQRRGRARKQRSKYFIFTPQGPGSRSSEYWQSLEADMRRAYEDELRIVK 520

Query: 556 PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE 615
                 K       + + ++STGA +T D++   ++ +C +  +  +   +P FK+    
Sbjct: 521 MANEREKVEEEEDGREFRIQSTGALLTLDNACQHLYHFCAVSATGSFVDSRPQFKFTDVL 580

Query: 616 EA-YECELTLPSNAPFQTIVGPTSRNKN---------LSKQLVCLEACEKLHQVGALNDH 665
                 E+ LP        + P+ R  N         ++++    EA   L++ G +ND+
Sbjct: 581 TGQIISEVLLP------ICIDPSVRKANSLKSWRTEKMARKDAAFEAYTALYRAGLVNDN 634

Query: 666 LLP 668
           LLP
Sbjct: 635 LLP 637



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 109/253 (43%), Gaps = 29/253 (11%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDS 1086
            L PS++ + E  ++A QLR  +        +   L+++ALT+    E    ++LE  GD 
Sbjct: 891  LFPSILHKFECDLIADQLRTSLLSPVAFQLLDLPLLVKALTSSSTGEVEDYQQLEFYGDC 950

Query: 1087 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVA 1146
            +LK+  S HL    PK+ E  L+ ++   V N +L +      L  Y+    F   +W  
Sbjct: 951  ILKFISSLHLMAANPKEPESFLTQKKGNIVSNGSLTRASLSAGLDRYVITKRFTGAKW-Q 1009

Query: 1147 PGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
            P  L                         +T  V   P  +    + SK IAD  E++IG
Sbjct: 1010 PRLLV------------------------ETVTVTSPPNKVK---LSSKLIADVVESIIG 1042

Query: 1207 AYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFT 1266
            A +V GG   A   ++ L +  +  +S+ D            P    +  +E  IG+ F+
Sbjct: 1043 ASFVVGGFPKAFACIQTL-LPLENWISIPDANNILYDFAQEGPTFTGLSTLERLIGHTFS 1101

Query: 1267 VKFLLQEAITHAS 1279
             KFLL +AITHAS
Sbjct: 1102 KKFLLLDAITHAS 1114


>gi|161783812|sp|Q7SCC1.3|DCL2_NEUCR RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease dcl-2; Includes: RecName:
           Full=ATP-dependent helicase dcl-2
 gi|18376024|emb|CAB91758.2| related to RNA helicase/RNAseIII CAF [Neurospora crassa]
          Length = 1540

 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 172/664 (25%), Positives = 289/664 (43%), Gaps = 83/664 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQL++FE + ++N I  L   + + M+A     D     + +G    I FL PTV L 
Sbjct: 72  RAYQLEMFEASLKQNIIVAL--FSDRVMVA-----DGHWQWQDSG---RIWFLTPTVALA 121

Query: 107 HQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQILLDALRKAFL 164
            QQ+ V++      +     G  GVD W  Q  W   +    ++V T QIL DA   +F+
Sbjct: 122 RQQHRVLQSQIPSVKAIMLCGQDGVDSWSEQAVWDAVLLNVRIVVSTYQILFDANAHSFV 181

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVSSAM 220
            LD +  IVIDE H+ +G+HP  ++M E Y  +       P + G+TASP+    ++   
Sbjct: 182 RLDSLSLIVIDEAHNCSGSHPIARLMTEAYLPAKKAGLPVPSILGLTASPLKSNNLAD-- 239

Query: 221 DCEGQISELESTLDS--QVFTIEDKTEMEVFVPSAKESCRFYDQSKF--CGSDLKGKLEV 276
                I +LE  LD+  +  TI  + E+   V   +     Y  S      +DL  +   
Sbjct: 240 -----IEKLEQVLDAVCRTPTIH-REELLAHVNRPEMLVVSYGDSGTDPTPTDLMTRFLE 293

Query: 277 SWSKFDAS------LSKLQGSQLNCYK--DMDDKHKTL-RKQLSDYHAKILYCLDELGLI 327
           ++ + D S      L K Q ++    K   M  K  TL +K+L   + + L    E+G  
Sbjct: 294 AYHRLDISKDPDVLLLKAQRTERAREKLRQMITKKDTLAQKELRGVYNRALLVRREIGPW 353

Query: 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
            A   +   +  +L   E  E   Q       ++ E L  I   +P   K  +       
Sbjct: 354 AADYYLTRTVSHMLAELERGEPPAQHR-----YIGEALRSI--PIPAISKEPIQ------ 400

Query: 388 KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL------- 440
                  +S K+  LL++  S  +    + I+FV+  +   +V   +   P         
Sbjct: 401 -------LSPKVQTLLKVLASHQQDP--VGIVFVKERVMVSIVTHIISTHPLTKDRYRTA 451

Query: 441 THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
           + +  A + G   +   +T K     LE FR G+ NLL AT V+EEG+ VP C+ VI FD
Sbjct: 452 SMIGTASVPGKARNHMDMTKKEDMTSLEGFRLGRFNLLVATSVLEEGIDVPICNLVICFD 511

Query: 501 LPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACF 560
            P  + S+IQ RGRAR+ +S   LM++  + +      ++ R  +   +  + ++ E   
Sbjct: 512 EPSNIKSFIQRRGRAREVSSTLYLMVQNASSESATDWHNLERLMKERYEDEMRQNAELEL 571

Query: 561 LKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPS-DKYYTPKPIFKYKSA----- 614
           L            VESTGA +T   + + ++ +C  + S  +Y   +P F  +       
Sbjct: 572 LDDPRIGSYPVLEVESTGARMTIRDARSHLNHFCAKVSSRSRYLQKEPYFVIRQVNPDPA 631

Query: 615 ----EEAYECELTLPSN-AP----FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDH 665
                   +  + LP++ AP     +++   TS  + L+      +A + L+  G +N++
Sbjct: 632 SPGRRTLLQATVHLPASLAPDLRRHESLWTWTS--EKLAIMDASFQAYKALYNAGLVNEN 689

Query: 666 LLPS 669
           LLP+
Sbjct: 690 LLPT 693



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 153/360 (42%), Gaps = 73/360 (20%)

Query: 1009 PELLVRVD-VPISVVKSLYLLPSVMQRLE-SLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            P   +R+D  P    +   ++P+  + +E SL+ A  +   + C   + ++P  LI  AL
Sbjct: 930  PSTQIRMDNFPAVFAQVGAVIPAFTRAVEMSLVAADLMYNRLGCLQLD-NLP--LITTAL 986

Query: 1067 TTLGCCESFSMERLELLGDSVLKY-------AVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
             + G     + ERLE +GD++LK+       A+S H  +  P  HE  LS  +   V N 
Sbjct: 987  ISSGSRGPTNYERLEFIGDTILKFCACLTASALSAHHSIV-PNHHERLLSQWKDKLVNNV 1045

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKV 1179
             L +   D  L  YI +SA   ++W        RP   E  +D ++ P+  +        
Sbjct: 1046 RLCRASRDFGLDEYIINSAAS-KKW--------RPKFVEDYMDEMKSPISAE-------- 1088

Query: 1180 VVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAAL------------YMMKWLGID 1227
                      R M SK +AD  E+LIGA Y+ GG+  AL               KW  I+
Sbjct: 1089 ---------TRQMSSKMVADVVESLIGAAYMCGGMSKALECVALLLPTPKSSQFKWQEIE 1139

Query: 1228 ADLEVSLVDDCITRASLRSYVPR----INEIKDIESKIGYEFTVKFLLQEAITHASVQEF 1283
                       ++R  L  + P+      +++ +E  + Y F  K LL EA+TH S    
Sbjct: 1140 -----------LSRTQLFEFAPKDAILSKQLEPLEKAMDYTFNKKSLLIEAMTHPSCAGL 1188

Query: 1284 YCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLI 1343
               ++ Y+ L+     +L  I   VK         ++GP+  A   + + L S+V A ++
Sbjct: 1189 GTNESCYERLEFLGDAILDVIV--VKRL-----MAETGPNELAHNDMHEHLSSVVTADIM 1241


>gi|339242189|ref|XP_003377020.1| putative ribosomal protein S7e [Trichinella spiralis]
 gi|316974223|gb|EFV57735.1| putative ribosomal protein S7e [Trichinella spiralis]
          Length = 2029

 Score =  152 bits (384), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 27/305 (8%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA----QAIKSNGFKKLIIFLAPT 102
           R+YQ ++ E AK+ N I  L TG GKT IAVMLI++++    Q +K  G + L  F+   
Sbjct: 339 RLYQKELLECAKKENVIVTLGTGTGKTFIAVMLIREMSESVHQPLKEGGKRSL--FIVDK 396

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           V LV QQ + IR++T+ +V E++GA GVD W ++ W +  +K  VLVMT +I  + L   
Sbjct: 397 VPLVKQQAEHIRINTNLKVGEFHGALGVDCWSAKIWMEFFDKFHVLVMTAEIFRNILTHG 456

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEF---YHKSDN--KPKVFGMTASPVVRKGVS 217
           F+  DIV  IV DECHHAT  HPY KIM+ +   Y+ +D+  +P++ G+TAS + +KG  
Sbjct: 457 FIKFDIVNLIVFDECHHATKQHPYKKIMELYKLCYNNNDSGIQPRILGLTASVMNKKG-- 514

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
             +  +  I  LE+TL S+V        ++++  SA            C +D K      
Sbjct: 515 DEIGLQKAIRNLETTLCSRVVGTSHAELLKLY--SADPHIAIVA----CKNDNK----YD 564

Query: 278 WSKFDASLSKL----QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
           W + D     L    Q S   C ++ +       + + D  AK+   + +LG  CA +  
Sbjct: 565 WHELDLFFQHLVRSTQKSLERCGRECEGNVSLYIQHVCDVLAKLDSIMGQLGPWCALQVC 624

Query: 334 KICLE 338
           K  L+
Sbjct: 625 KQMLQ 629



 Score =  110 bits (275), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 43/271 (15%)

Query: 441  THLTVAYLTGSTTSVDALTPKV--QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
            ++L V Y+ GS  S +   P    Q+EVL++FR GK+NLL AT ++EEG+ V +C+YVIR
Sbjct: 767  SYLEVDYVVGSRMSAEVAEPSFARQEEVLKNFRHGKLNLLAATSILEEGIDVRHCNYVIR 826

Query: 499  FDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD-IIRSE-------RSVTDT 550
            FD P T  S++QS+GRARQ  + + ++++   L+   ++ +  + +E       R +   
Sbjct: 827  FDTPLTFRSFVQSKGRARQKIAYYTILVQDRFLESFQEMLNSFVETEKFLKVNGRDLNIL 886

Query: 551  ALSRDPEACF------LKAC-------------------TYVKTKSYIVESTGASVTTDS 585
              ++D +  +      +  C                   TY +    +     A +   S
Sbjct: 887  TRTKDRDRSYSGNNDQVDNCRKEVNLPNGDVDSLVEPYYTYFEENGLV--KKAACLVLSS 944

Query: 586  SVNLIHRYCEMLPSDKYYTPKPIFKY-----KSAEEAYECELTLPSNAPF-QTIVGPTSR 639
            + N+I RYC  L  D++    P F       K    +Y   + LP+ +P  + I G   +
Sbjct: 945  AHNVIKRYCNKLRKDRFADSSPKFSVQTILNKDLSISYVATVQLPTTSPLKKKIEGKPMQ 1004

Query: 640  NKNLSKQLVCLEACEKLHQVGALNDHLLPSV 670
            N  L++     E  + LH +G LN+ L+P V
Sbjct: 1005 NAKLAEMAAAFETAKMLHAMGELNEFLIPPV 1035



 Score =  110 bits (274), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 128/256 (50%), Gaps = 38/256 (14%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            +L ALT     + F +E +E LGDS LK+ VS H+F+     +EG+L++ RS  V N+ L
Sbjct: 1543 VLRALTLRKAQDMFDLESMEALGDSFLKFIVSLHVFIKETNWNEGRLTSLRSEIVSNTNL 1602

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVPCECGVDTLEVPLD-GKFFTQD--- 1176
              LG  + LQ  +    FDP  +W+ P   SL  +  E G +++   +D G    ++   
Sbjct: 1603 FNLGKQKLLQAKLTAVPFDPTAQWLPPCFRSLAAL--ESGYESVNELIDEGDSKKKNEAL 1660

Query: 1177 -----TKVVVGKPCDM-----GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1226
                 T VVV +  +M      H+ +  K+IADC EAL+G Y +  G+  A+ ++KW GI
Sbjct: 1661 KANTPTPVVVAERYEMCSLNRTHQVIYDKSIADCVEALVGCYLLEAGMRPAIKLLKWFGI 1720

Query: 1227 DADLEVSLV-----------------DDCIT---RASLRSYVPRINEIKDIESKIGYEFT 1266
            D D  +  +                 ++C+     A + S +    ++   E+KIGY FT
Sbjct: 1721 DIDGNLMNLLSSSSSSSSSSSTAFCSENCVLIGPEAKIHS-IWTAYDLNSFEAKIGYRFT 1779

Query: 1267 VKFLLQEAITHASVQE 1282
             K  L +A+TH+S  E
Sbjct: 1780 NKAYLIQALTHSSYNE 1795



 Score = 45.1 bits (105), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 27/138 (19%)

Query: 921  YSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQ-SHNPHNLL 979
            Y +  + N  +  SPF        ++F  YF     + ++   QPLL +K  S    NLL
Sbjct: 1234 YFVTAVDNTCTPMSPFPLKM---YRSFAEYFEVTKQVKVLDKNQPLLSVKMVSFKRLNLL 1290

Query: 980  ---------VNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPS 1030
                      +F+D   S               H  + PEL++   +P S+ + L  LP+
Sbjct: 1291 CEKPISILLFDFDDDANS--------------CHCKLVPELVIIHPMPASMWRCLIFLPT 1336

Query: 1031 VMQRLESLMLASQLREEI 1048
            V+ R+  L++A QLR +I
Sbjct: 1337 VLYRMNHLLIAEQLRLQI 1354



 Score = 41.6 bits (96), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 12/76 (15%)

Query: 1317 TTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLE------ 1370
            T++    ++ PK LGD+ ES+ GA+ +D+  +L  VW+++  +++  +   + +      
Sbjct: 1892 TSEFAEHVEVPKPLGDIFESVAGAIFLDSHCSLATVWQVYYNMIAEEIGKQRSDFTSFNK 1951

Query: 1371 ------LPPLRELIEL 1380
                  + P+R L+EL
Sbjct: 1952 CLCHPPISPVRHLLEL 1967


>gi|350423180|ref|XP_003493408.1| PREDICTED: endoribonuclease Dcr-1-like [Bombus impatiens]
          Length = 1934

 Score =  150 bits (380), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 252/1125 (22%), Positives = 426/1125 (37%), Gaps = 215/1125 (19%)

Query: 44   FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA----QAIKSNGFKKLIIFL 99
            F PR YQ+++F  AK ++ I  L     +T I + LI++ A    + +   G + L I  
Sbjct: 14   FTPREYQVELFYAAKDKDIIVCLGKNYEQTFIVIKLIQEFATNNRRLLSEGGRRSLFILT 73

Query: 100  APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
                  +   Y  I+  TD +V         D      + +    + VLV T +     L
Sbjct: 74   DEEKCTIKASY--IQQLTDLKV------LLCDTCSLTEFIENFETSHVLVTTAKTCAQLL 125

Query: 160  RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSA 219
                +    +  ++IDECH +  N+    I++      +N P++ G+             
Sbjct: 126  TDGKILPCQINLVIIDECHKSIDNNKLKFILQTIL-ACENVPRIIGLAVPLFNLTQEPGR 184

Query: 220  MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
            +  E  I ++E T   +V T  D   +  + P  KE    Y +++      KGKL  +  
Sbjct: 185  LGLE--IEKVEDTFQCEVETASDILSILRYSPKPKEYVVEYAKNE------KGKLHTTME 236

Query: 280  KF---------DASLSKLQGSQLNCYKDMD---DKHKTLRKQLSDYHAKILYCLDELGLI 327
             +         D      +      Y+D+    D  +   + + D+    LY L+ LG  
Sbjct: 237  NYILHALEFLRDHRHDPTEIYNEEFYEDIQKIPDPTEKPFEMMQDF----LYILETLGPW 292

Query: 328  CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
            CA  A    L  + K + +    R   L     L  V  V      L D  F        
Sbjct: 293  CADRAALALLILIEKLKVKTPYERHYLL-----LNMVASVFTKIRALCDNTFEVLS---E 344

Query: 388  KAVDLGYISTKLHELLQLFLSF----------------------------GKSTQ----- 414
            K     Y + K+H LLQ+  ++                            GK  +     
Sbjct: 345  KERIYKYTTPKVHRLLQILKTYTPYYNKNINKTANKLNENIPQKLPVNNRGKPPRASRHM 404

Query: 415  -------VLC-IIFVERIIAAKVVERFV-------KKVPFLTHLTVAYLTGSTTSVDA-- 457
                   +LC +IFV +   AKV+   +       K + FL+ L          S     
Sbjct: 405  RGITDPDLLCGVIFVNKAFVAKVLFYLLNEISMHDKDLHFLSPLYTIERNIEDISYSKDL 464

Query: 458  -LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516
             +  + Q+EVL+ FR  + NLL +T ++EEG+ +P C++V+R+D PKT  SY+Q + RAR
Sbjct: 465  EIEHRKQEEVLKRFRIHECNLLISTSILEEGIDIPKCNFVMRYDFPKTYQSYVQCKSRAR 524

Query: 517  QHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVE- 575
              ++ ++L++ +              S+  +   A     E   L  C+  +        
Sbjct: 525  ATDALYVLLVPQE------------MSKEYIWQLAQYHYIEKTLLVKCSNNEPSEEEENE 572

Query: 576  ----------------STGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA----E 615
                                 VT +S+++L++RYC  LPSD +    P +  +      +
Sbjct: 573  ADMYAAMIPHYKPLDGDNAPKVTFNSAISLVNRYCAKLPSDTFTRLTPEWSIREMIVDNK 632

Query: 616  EAYECELTLPSNAPFQTIV-GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE-- 672
              Y C L LP N+P + +V      N+ +++++  L+ C  LH+   ++D+LLP  +E  
Sbjct: 633  FMYTCSLRLPINSPVKYVVLSYPMPNRAMARRMAALQLCIDLHRKNEIDDNLLPIGKENF 692

Query: 673  ------------PSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHA 720
                        P E    SK N S    GTTKR++ +      AL+       GV  + 
Sbjct: 693  KAKPEDAEVPALPDE----SKVNFSEARPGTTKRRQYYYKKTAEALTD-CRPIIGVPSYL 747

Query: 721  YKFN--FACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATV-SSSGQVHLDA 777
            Y  N   +C +  E  +    +   E ++ +G   + L  + K     + + SG+VH+  
Sbjct: 748  YHINLVLSCPLPEEQNTRGRRIYPPE-ESAIGFGIITLKEIPKLCPFPIYTRSGEVHVKL 806

Query: 778  DQMSKAKCFQEL-------FFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLP 830
                +     E+       F N  F                    TN L    Y+ L  P
Sbjct: 807  KLSKQTIVLNEMQVEKIAIFLNYTF--------------------TNVLRLQQYLMLFDP 846

Query: 831  LEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCH 890
                    + S+ I    ++  + V   I + +FL     N N G        P K    
Sbjct: 847  -----NASENSYMIVPVKLDEQSDV---IVDWNFLECIYKNRNAG--------PTKVPEE 890

Query: 891  GKDVIHLANGSVDAKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKT 946
             +      N   DA    D V++  +      + + + EI  N + +S F G   DD  T
Sbjct: 891  IR-----KNFKFDASKYHDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPG---DDYST 942

Query: 947  FVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKK 1000
            F  Y+ +KY I + +  QPLL +  +    N L     N  G     S + +K       
Sbjct: 943  FEEYYLKKYDIQIQNLDQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENL 1002

Query: 1001 PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
             Q  + +  EL      P S+ +    LP ++ R+ +L+LA+Q+R
Sbjct: 1003 EQKQI-LVAELCAIHPFPASLWRQAVCLPCILYRINALLLANQIR 1046



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 134/317 (42%), Gaps = 88/317 (27%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            SLIL+ALT     +  ++ERLE +GDS LKYA++ +L+ TY   HEG+LS  RS  V N 
Sbjct: 1400 SLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNL 1459

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL---SLRPVPCECGV-----DTLEVP--- 1167
             L++LG  + L   +  + F+P   W+ P       L     + GV     +  ++P   
Sbjct: 1460 NLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELEQALIKSGVPSTLWNQADIPALQ 1519

Query: 1168 -LDGKFFTQ-----DTKVVVGKP-----------------CDMGHRWMGSKTI-----AD 1199
             ++    TQ     + K+ V K                  C + +  +   +I     AD
Sbjct: 1520 AVNPSEITQLVRETEQKLGVMKTELDRNETSLSNNLDNVRCFIPYNLITQHSIPDKSIAD 1579

Query: 1200 CAEALIGAYYVGGGLIAALYMMKWLGIDA--DLEVSLVDDCITRAS-------------- 1243
            C EALIGAY +  G   AL  M WLGI      E++++ +   R                
Sbjct: 1580 CVEALIGAYLIACGSRGALLFMAWLGIHVLPTEEITIIQESEPRERVPGSTPYIKGTNEK 1639

Query: 1244 -------------------LRSYVP--------RINEIKDIESKIGYEF-TVKFLLQEAI 1275
                               L  Y+P         ++  +++E  IGYEF  + +LLQ A 
Sbjct: 1640 GQTTWTQIRYGKLEEPQNPLLRYIPDPEQELKMMLDGYEELEKSIGYEFHDISYLLQ-AF 1698

Query: 1276 THASVQEFY---CYQNL 1289
            THAS Q      CYQ L
Sbjct: 1699 THASYQPNRLTDCYQRL 1715



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDS 1383
             PKALGD+ ES+ GA+ +D+ ++LD VW ++  I+   +      +P  P+REL+EL   
Sbjct: 1814 VPKALGDVFESLAGAIYLDSGMSLDAVWSVYYAIMKNEIEQFSTNVPKSPIRELLELEPE 1873

Query: 1384 LGYFVKENCTLKGEMVHA 1401
               F K      G  V  
Sbjct: 1874 TAKFGKPEKLADGRRVRV 1891


>gi|347440704|emb|CCD33625.1| hypothetical protein [Botryotinia fuckeliana]
          Length = 921

 Score =  150 bits (380), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 130/225 (57%), Gaps = 15/225 (6%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK-DIAQAIKSNGFKK---LIIFLAP 101
           PR YQL++FE AK++N IAVL+TG+GKT IAV+L++  I Q ++     K   +  FL  
Sbjct: 511 PRDYQLELFEKAKKQNIIAVLDTGSGKTFIAVLLLRWIIDQELEDRAIGKPHRVSFFLVD 570

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V L HQQ+ V+R + +   +   G  G D  D   W+K ++ N V+V T +IL   L  
Sbjct: 571 SVTLCHQQHSVLRNNLNQPTDMICGLMGTDLSDHIKWKKRLDTNMVIVCTAEILRQCLHH 630

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPV-VRKGV 216
           +F+++  +  ++ DE HHA  +HPY +I+K+FY     K    PK+FGMTASPV  R  V
Sbjct: 631 SFVTMAQINLLIFDEAHHAKKDHPYARIIKDFYRNDTEKDIALPKIFGMTASPVDARDNV 690

Query: 217 SSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD 261
             A +      ELE  L SQ+ T ED + ++  +    E+  +YD
Sbjct: 691 KKAAE------ELEGLLHSQICTAEDPSLLQYSIKGKPETLAYYD 729


>gi|384500233|gb|EIE90724.1| hypothetical protein RO3G_15435 [Rhizopus delemar RA 99-880]
          Length = 272

 Score =  150 bits (380), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 112/193 (58%), Gaps = 7/193 (3%)

Query: 29  DHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA---- 84
           D+ +D   +   +I   PR YQ  +F+ A + N I VL+TGAGKT+I+VMLIK +     
Sbjct: 74  DYQIDQEQAQQAAI-LAPREYQYDLFQKALKENIITVLDTGAGKTLISVMLIKHMTTLER 132

Query: 85  QAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINK 144
           +A  +    KL  FL   V LV QQ  VI+ + D  +E   G   VD W  + W+    +
Sbjct: 133 EARLTRRETKLAFFLVDRVPLVFQQASVIKANCDIVLEAICGEMDVDNWSEKRWRLIFEE 192

Query: 145 NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPK 202
           +DV VMT QI LDAL   FLS+D    I+ DECHH T  HP+  IM+EFY +   + +PK
Sbjct: 193 SDVCVMTAQIFLDALYHGFLSIDKAHLIIFDECHHTTKKHPFNLIMREFYDRCPIEKRPK 252

Query: 203 VFGMTASPVVRKG 215
           +FGMTASP+  K 
Sbjct: 253 IFGMTASPMHSKS 265


>gi|119174400|ref|XP_001239561.1| hypothetical protein CIMG_09182 [Coccidioides immitis RS]
          Length = 1357

 Score =  150 bits (378), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 130/445 (29%), Positives = 207/445 (46%), Gaps = 47/445 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA--IKSNGFKKLIIFLAPTV 103
           PR YQ+++FE AK+ N IAVL+TG+GKT+IAV+L+K I +   I  +  K   +    +V
Sbjct: 99  PREYQVELFEKAKKDNIIAVLDTGSGKTLIAVLLLKHIIEQELIDRSAEKPHRV---DSV 155

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            LV QQ  V++ + +  V+++ GA   D W+ + W++ + KN V+V T ++L   L  AF
Sbjct: 156 TLVFQQAAVLQNNINQRVDKFCGAMETDLWNGETWERHLAKNMVIVCTAEVLYQCLLHAF 215

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN--KPKVFGMTASPVVRKGVSSAMD 221
           + ++ +  ++ DE H+A  +HPY +I+K+FY K  N  +PK+FGMTASP     V + MD
Sbjct: 216 VKMENINLLIFDEAHNAKKDHPYARIVKDFYLKDGNAKRPKIFGMTASP-----VDAKMD 270

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281
                  LE+ L+SQ+ T  + + +   VP   E    YD                  + 
Sbjct: 271 VVKAARNLETLLNSQIATASNLSLLRQSVPRPNEEVWSYD------------------RL 312

Query: 282 DASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL--EK 339
           D      Q  +   YK++  +   LR  L       L     LG  CA       L  E 
Sbjct: 313 D------QPFETRLYKELRSRFGDLRA-LEKLFTFSLKASSNLGAWCADWVWSYALTEES 365

Query: 340 VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKL 399
           + K +         +L     +     +    +  A +I     F    AV    +S K+
Sbjct: 366 LPKLEGRAARTAMGNLPIAKIVRPEAEI--QRIREASEIIRSHKFG-DPAVRPELLSPKV 422

Query: 400 HEL-LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVD-A 457
             L  +L   F + T   CI+F E+   A+++     ++    HL    L G  +     
Sbjct: 423 RRLHHELLKYFERHTDTKCIVFTEQRHTARILCDLFSRIG-TKHLRPGVLIGVRSDASGG 481

Query: 458 LTPKVQKEVLE--SFRGGKVNLLFA 480
           +    +++VL   SFR G+VN LFA
Sbjct: 482 MNISFRQQVLAVVSFRKGEVNCLFA 506



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 100/439 (22%), Positives = 142/439 (32%), Gaps = 172/439 (39%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P SV    +  P+++ R+ES ++A +      C   +  I   L LEALT         
Sbjct: 884  IPASVAAFAFAFPAIISRIESYLIALEA-----CQELDLPISPELALEALTKDSDNTDEH 938

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G  +++  ERLE LGD  LK A S  LF   P   E      R W      
Sbjct: 939  RAQQIHFQRGMGKNY--ERLEFLGDCFLKMATSISLFAMNPDNDE------RGWY----- 985

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
                                      PG L+L               L GK   Q     
Sbjct: 986  --------------------------PGGLTL---------------LQGK--GQSKGAT 1002

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGA----------YYVGGGLIAALY------MMKWL 1224
              K        +  KTIAD  EALIGA          + +    + AL       ++ W 
Sbjct: 1003 ENKHA------LADKTIADVCEALIGACCLLASKNHRFDIAVKAVTALVSSDDHNVLNWE 1056

Query: 1225 GIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY 1284
                   +      +  A+       ++    ++ K+GY+F    LL+ A TH S    +
Sbjct: 1057 QYSRLYSIPKYQTAVVDAA------ELDLAAQVKKKLGYDFKYPKLLRSAFTHPSYPSAW 1110

Query: 1285 ----CYQNL--------------------------------------------------Y 1290
                CYQ L                                                  +
Sbjct: 1111 ARVPCYQRLEFLGDALLDMACVEHIYHKHPDKDPQWLTEHKMAMVSNKFLGSVAVRLGLH 1170

Query: 1291 KHLQHCSTLLLSQITEYVKSF---------PKPGETTDSGPSMKAPKALGDLLESIVGAV 1341
             HL H ST L SQIT YV+           P    T  S P    PK L D++E+ +GA+
Sbjct: 1171 SHLNHFSTSLQSQITNYVEEIEAAELESGDPPDAWTLTSDP----PKCLPDMVEAYIGAI 1226

Query: 1342 LIDTKLNLDEVWRIFKPIL 1360
             ID+  + + V   F+  L
Sbjct: 1227 FIDSGFSFEVVEEFFQKFL 1245



 Score = 43.5 bits (101), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 609 FKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
           + ++  + A+ CE+ LP  +P + IVG  +  K ++KQ    E C  L + G L+DH +
Sbjct: 539 YYHRFTKNAFVCEVVLPEKSPIRGIVGKPASKKLIAKQSAAFETCLLLRKHGLLDDHFV 597


>gi|164424566|ref|XP_963538.2| hypothetical protein NCU06766 [Neurospora crassa OR74A]
 gi|157070568|gb|EAA34302.2| predicted protein [Neurospora crassa OR74A]
          Length = 1421

 Score =  150 bits (378), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 170/664 (25%), Positives = 288/664 (43%), Gaps = 85/664 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQL++FE + ++N I      + + M+A     D     + +G    I FL PTV L 
Sbjct: 72  RAYQLEMFEASLKQNIILF----SDRVMVA-----DGHWQWQDSG---RIWFLTPTVALA 119

Query: 107 HQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQILLDALRKAFL 164
            QQ+ V++      +     G  GVD W  Q  W   +    ++V T QIL DA   +F+
Sbjct: 120 RQQHRVLQSQIPSVKAIMLCGQDGVDSWSEQAVWDAVLLNVRIVVSTYQILFDANAHSFV 179

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVSSAM 220
            LD +  IVIDE H+ +G+HP  ++M E Y  +       P + G+TASP+    ++   
Sbjct: 180 RLDSLSLIVIDEAHNCSGSHPIARLMTEAYLPAKKAGLPVPSILGLTASPLKSNNLAD-- 237

Query: 221 DCEGQISELESTLDS--QVFTIEDKTEMEVFVPSAKESCRFYDQSKF--CGSDLKGKLEV 276
                I +LE  LD+  +  TI  + E+   V   +     Y  S      +DL  +   
Sbjct: 238 -----IEKLEQVLDAVCRTPTIH-REELLAHVNRPEMLVVSYGDSGTDPTPTDLMTRFLE 291

Query: 277 SWSKFDAS------LSKLQGSQL--NCYKDMDDKHKTL-RKQLSDYHAKILYCLDELGLI 327
           ++ + D S      L K Q ++      + M  K  TL +K+L   + + L    E+G  
Sbjct: 292 AYHRLDISKDPDVLLLKAQRTERAREKLRQMITKKDTLAQKELRGVYNRALLVRREIGPW 351

Query: 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
            A   +   +  +L   E  E   Q       ++ E L  I   +P   K  +       
Sbjct: 352 AADYYLTRTVSHMLAELERGEPPAQHR-----YIGEALRSI--PIPAISKEPIQ------ 398

Query: 388 KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL------- 440
                  +S K+  LL++  S  +    + I+FV+  +   +V   +   P         
Sbjct: 399 -------LSPKVQTLLKVLASHQQDP--VGIVFVKERVMVSIVTHIISTHPLTKDRYRTA 449

Query: 441 THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
           + +  A + G   +   +T K     LE FR G+ NLL AT V+EEG+ VP C+ VI FD
Sbjct: 450 SMIGTASVPGKARNHMDMTKKEDMTSLEGFRLGRFNLLVATSVLEEGIDVPICNLVICFD 509

Query: 501 LPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACF 560
            P  + S+IQ RGRAR+ +S   LM++  + +      ++ R  +   +  + ++ E   
Sbjct: 510 EPSNIKSFIQRRGRAREVSSTLYLMVQNASSESATDWHNLERLMKERYEDEMRQNAELEL 569

Query: 561 LKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPS-DKYYTPKPIFKYKSA----- 614
           L            VESTGA +T   + + ++ +C  + S  +Y   +P F  +       
Sbjct: 570 LDDPRIGSYPVLEVESTGARMTIRDARSHLNHFCAKVSSRSRYLQKEPYFVIRQVNPDPA 629

Query: 615 ----EEAYECELTLPSN-AP----FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDH 665
                   +  + LP++ AP     +++   TS  + L+      +A + L+  G +N++
Sbjct: 630 SPGRRTLLQATVHLPASLAPDLRRHESLWTWTS--EKLAIMDASFQAYKALYNAGLVNEN 687

Query: 666 LLPS 669
           LLP+
Sbjct: 688 LLPT 691



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 109/269 (40%), Gaps = 61/269 (22%)

Query: 1091 AVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQL 1150
            AV+ H  +  P  HE  LS  +   V N  L +   D  L  YI +SA   ++W      
Sbjct: 899  AVAAHHSIV-PNHHERLLSQWKDKLVNNVRLCRASRDFGLDEYIINSAAS-KKW------ 950

Query: 1151 SLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYV 1210
              RP   E  +D ++ P+  +                  R M SK +AD  E+LIGA Y+
Sbjct: 951  --RPKFVEDYMDEMKSPISAET-----------------RQMSSKMVADVVESLIGAAYM 991

Query: 1211 GGGLIAAL------------YMMKWLGIDADLEVSLVDDCITRASLRSYVPR----INEI 1254
             GG+  AL               KW  I+           ++R  L  + P+      ++
Sbjct: 992  CGGMSKALECVALLLPTPKSSQFKWQEIE-----------LSRTQLFEFAPKDAILSKQL 1040

Query: 1255 KDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKP 1314
            + +E  + Y F  K LL EA+TH S       ++ Y+ L+     +L  I   VK     
Sbjct: 1041 EPLEKAMDYTFNKKSLLIEAMTHPSCAGLGTNESCYERLEFLGDAILDVIV--VKRL--- 1095

Query: 1315 GETTDSGPSMKAPKALGDLLESIVGAVLI 1343
                ++GP+  A   + + L S+V A ++
Sbjct: 1096 --MAETGPNELAHNDMHEHLSSVVTADIM 1122


>gi|391341486|ref|XP_003745061.1| PREDICTED: endoribonuclease Dicer [Metaseiulus occidentalis]
          Length = 1863

 Score =  149 bits (377), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 281/1220 (23%), Positives = 473/1220 (38%), Gaps = 236/1220 (19%)

Query: 43   NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD--IAQAIKSNGF-------- 92
            +F P  +Q+++   AKR         G  K +   +L K   I    K NG+        
Sbjct: 33   HFTPAEFQVELLAEAKR---------GGNKVIFISVLDKPFFIVNFTKENGYWLRPPSAS 83

Query: 93   --KKLIIFLAPTVHLVHQQY-----DVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN 145
              K L++ L+ T  L   Q+     D+  V  D + +E  G            +K ++ +
Sbjct: 84   IDKLLVVCLSSTEMLSTFQWLDDYTDLTCVCLDPDADEDEGL-----------EKRLSNS 132

Query: 146  DVLVMTPQILLDALRKAFLSLDIVCFIVIDECH-----HATGNHPYTKIMKEFYHKSDNK 200
             V++  P  +   L +  L     C ++ID C         G+    K++      +D K
Sbjct: 133  SVILTVPTAI-STLSEFSLKF---CTVLIDRCESYAETDIAGSANLLKLI------ADRK 182

Query: 201  PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY 260
             +V G+T +     GV SA     +I  LE    +Q     D T +  + P  +E    Y
Sbjct: 183  LRVVGLTNA---LSGVGSAETARSRIQNLEKYWKAQATVCNDLTVLSKYGPKPEEKVLEY 239

Query: 261  D---QSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKI 317
                  K    D+   L  +  KF     KL+G+           +  + ++   Y  ++
Sbjct: 240  GIFYADKDVEYDMVLDLIENNLKFLEMSLKLKGN-----------YSEVIQEAMRYPMEL 288

Query: 318  LYCLDELGLICAYEAVKICLEKVLKAQEECEIY-----RQSSLQCKY-FLEEVLHVIGSA 371
             Y    LG  CA EA +  L +V ++ +  E        +++LQ  + FL++ L +    
Sbjct: 289  AYVFLTLGPWCAAEAAQEFLGEVSRSIDNLEYLTDIQISKTTLQIVFTFLQQFLELCRIL 348

Query: 372  LPL-------ADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCI------ 418
            + L       A+ I  D     +  +D   + TK   +       GK ++  C+      
Sbjct: 349  VDLVKCDPSEANAIHPD---KLTNLMDAILLYTKPKMVPSQISEDGKKSKPHCVPWHEDP 405

Query: 419  ------IFVERIIAAKVVERFV----KKVPFLTHLTVAYLTGSTTSVDALTPKV------ 462
                  I V   I A VV R++    K VP L  +   ++ G TT +D   P++      
Sbjct: 406  TALCGLIIVRHRITALVVNRWLETVSKTVPSLAFVKSNFIIGQTT-LDGDDPELVAAGLT 464

Query: 463  -QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN-- 519
             Q+EVL+ FR    NLL  T   E+ + +P+C+ V+RFD P++  SYI  + +A+  +  
Sbjct: 465  RQEEVLQKFRYRDYNLLITTTATEDTLELPHCNLVVRFDPPESYKSYIVCKAKAKASSKC 524

Query: 520  SQFILMLERGNLKQRNKLFDIIRS------ERSVTDTALSRDPEACF---LKACTYVKTK 570
            ++F +ML +    +   LF   R       ERS  +   +   E      L+ C    + 
Sbjct: 525  ARFFIMLSQYETAKFTHLFSDYRKMEGLLLERSHQEDVTTEGDEGASPSDLERCYRPSSG 584

Query: 571  SYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKY-KSAEEAYECELTLPSNAP 629
              +V       T  +S+ +I+RYC  LPSD      P+F+  K  ++ Y+C L LP N+P
Sbjct: 585  DCLV------ATLSNSIAIINRYCLRLPSDTLTKLAPVFRINKLPDDTYQCVLRLPINSP 638

Query: 630  F-QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNE 684
              + IVG       L+KQ V L A E+LH+ G ++DHL P    S++  +E+ ++     
Sbjct: 639  LKEEIVGEPMATPVLAKQDVSLRALERLHKRGEIDDHLSPFGKDSLKAKTEDQVVPLDET 698

Query: 685  SLPGA---GTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLI 741
               GA   GTTKR++ +  +      G    +    L+       C+I  E  S     I
Sbjct: 699  VAHGAARPGTTKRRQYYHKSLAPPFQGTLDTET-FFLYNISMKLLCAIPEEQNSR-ARTI 756

Query: 742  ESELDNDVG-NFELELYLVSKTVKATVSSSGQVHLDADQMS-----------KAKCFQEL 789
                D+  G  F     L         + SG+V +D +++S           KA+ F   
Sbjct: 757  YDPADSPRGFGFVSGTRLTPLCPFPIYTRSGEVMVDVEELSCALPLTEEQRKKAEFFHAY 816

Query: 790  FFNGLFG--KLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWS 847
             F  +    K  +K     SR  F               L++P+       DGS  + WS
Sbjct: 817  VFRDVLRLEKFPMKFDLKASRAGF---------------LIIPI------TDGS--VEWS 853

Query: 848  GINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNL 907
             I+   +  EF                               H  D     + + + +  
Sbjct: 854  FIDRIMNEDEF-----------------------------KPHKVDEEERRSFTFNREIF 884

Query: 908  KDMVVLA----IHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPG 963
             D VV+     I   + + +  I    +  S F        KTF +Y+  KY I + +  
Sbjct: 885  SDAVVMPWYRNIDKPQFFYVANICEQLTPVSEFPATP---FKTFDDYYRHKYNIGICNKS 941

Query: 964  QPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQMHVH----MPPELLVRVDVP 1018
            QPLL +  +    NLL   + +  G    + S  + K  + ++     + PEL +    P
Sbjct: 942  QPLLDVDHTSARLNLLTPRYVNRKGVSLPTSSEESRKAKRENLQQKQILVPELCLIHPFP 1001

Query: 1019 ISVVKSLYLLPSVMQRLESLMLASQLREEI--NCHSRNFHIPSSLILEALTTLGCCESFS 1076
             S+ + +  LP ++ R+  L+LA  +R  I   C      +P     + LT       F 
Sbjct: 1002 ASLWRKVVCLPCILYRMNHLLLADSIRMRIVNACGVGKAELPEGFKWKMLT-------FG 1054

Query: 1077 MERLELLGD-SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST---LHKLGTDRKLQG 1132
                E+L + ++LK +V        P   +  ++  R   + N+    L K G +    G
Sbjct: 1055 WTLTEVLKENAMLKQSV--------PVTEKEPVNEERIAEIRNAYLGGLRKGGVELTPDG 1106

Query: 1133 YIRDSAFDPRRWVAPGQLSL 1152
             +    FDP +   P    L
Sbjct: 1107 QLVIDTFDPSKVTIPNDEEL 1126



 Score =  107 bits (268), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 133/300 (44%), Gaps = 60/300 (20%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            +++L+ALT     +  ++ERLE +GDS LKYA++ +L+ TY   HEG+LS  RS  + N 
Sbjct: 1361 AILLQALTMSNANDGINLERLETVGDSFLKYAITNYLYCTYLGVHEGKLSFLRSKQISNV 1420

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPG----------QLSLRPVPCECGVDTL---E 1165
             L++LG +  +   +  + F+P   W+APG           L  +     C +      E
Sbjct: 1421 NLYRLGKELGIGSLMVATKFEPSDNWLAPGFCIPEGLEKAVLDSKIPNSHCNISQFKDGE 1480

Query: 1166 VPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLG 1225
               +G+F              + H  +  K+IADC EALIGAY V  G    L  M W G
Sbjct: 1481 ASGEGEFVPYSL---------LTHHSIPDKSIADCLEALIGAYLVSCGRCNTLKCMTWFG 1531

Query: 1226 I-------DADLEVSLV-----------DDCITRASLRSYVPRINEIKDIESKIGYEFTV 1267
            +       + D   SL            D+ + R  L  +V         E +IGY+F  
Sbjct: 1532 LRVLPLDCEGDAFASLFKKIPPPLPASYDERVLRQLLHGHV-------SFEERIGYKFKN 1584

Query: 1268 KFLLQEAITHASVQEFYCYQNL---YKHLQHCSTLLLSQ-ITEYVKSFP----KPGETTD 1319
            K  L +A THAS    Y Y  L   Y+ L+     +L   IT Y+   P     PG  TD
Sbjct: 1585 KGFLLQAFTHAS----YHYNTLTDCYQRLEFLGDAVLDYLITRYLYEDPVKQHSPGALTD 1640



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 72/130 (55%), Gaps = 16/130 (12%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKALGD+ ES+ GA+ +D+ ++LD  W ++  ++ P +      +P  P+REL+EL    
Sbjct: 1710 PKALGDIFESVAGAIYLDSGMSLDTTWNVYLAMMKPEIEYFSKHVPKSPIRELLELEPQT 1769

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F K   TL G     ++R++++   + G+G      R+++ AK  AA + L+ +E  +
Sbjct: 1770 AKFEKAELTLNG-----KIRVKVE---VFGKGSFIGIGRNKRIAKCTAAKRALRSVE--Q 1819

Query: 1441 KRISKGASNT 1450
            ++ S G   T
Sbjct: 1820 RKSSSGLYGT 1829


>gi|303314275|ref|XP_003067146.1| Type III restriction enzyme, res subunit family protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106814|gb|EER25001.1| Type III restriction enzyme, res subunit family protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 1487

 Score =  149 bits (377), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 134/223 (60%), Gaps = 11/223 (4%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA--IKSNGFK--KLIIFLAP 101
           PR YQL++FE AK+ N IAVL+TG+GKT+IAV+L+K I +   I  +  K  ++  FL  
Sbjct: 99  PREYQLELFEKAKKDNIIAVLDTGSGKTLIAVLLLKHIIEQELIDRSAEKPHRVSFFLVD 158

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V LV QQ  V++ + +  V+++ GA   D W+ + W++ + KN V+V T ++L   L  
Sbjct: 159 SVTLVFQQAAVLQNNINQRVDKFCGAMETDLWNGETWERHLAKNMVIVCTAEVLYQCLLH 218

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN--KPKVFGMTASPVVRKGVSSA 219
           AF+ ++ +  ++ DE H+A  +HPY +I+K+FY K  N  +PK+FGMTASP     V + 
Sbjct: 219 AFVKMENINLLIFDEAHNAKKDHPYARIVKDFYLKDGNAKRPKIFGMTASP-----VDAK 273

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ 262
           +D       LE+ L+SQ+ T  + + +   V    E    YD+
Sbjct: 274 VDVVKAARNLETLLNSQIATASNLSLLRQSVARPNEEVWSYDR 316



 Score =  127 bits (320), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 142/273 (52%), Gaps = 14/273 (5%)

Query: 400 HELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA-L 458
           HELL+ F    + T   CI+F E+   A+++     K+    HL    L G  +     +
Sbjct: 432 HELLKYF---ERHTDTKCIVFTEQRHTARILCDLFSKIG-TKHLRPGVLIGVRSDASGGM 487

Query: 459 TPKVQKEVLE--SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516
               +++VL   SFR G+VN LFAT V EEG+ +P+C+ ++RFDL  T++ YIQSRGRAR
Sbjct: 488 NISFRQQVLAVVSFRKGEVNCLFATSVAEEGLDIPDCNLIVRFDLASTLTQYIQSRGRAR 547

Query: 517 QHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVES 576
             NS   L++   + +   +    +  +R +     S D +A +         K Y V++
Sbjct: 548 HMNSTTCLIITCKSQEIMKRFCISLPKDRILN----SNDVDALYEGD---RNRKCYTVQT 600

Query: 577 TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGP 636
           TGA +T +SS+ ++  +   L  +K  +    + ++  + A+ CE+ LP  +P + IVG 
Sbjct: 601 TGAKLTYNSSLVVLAHFANSLQYEKETSTVVSYYHRFTKNAFVCEVVLPEKSPIRGIVGK 660

Query: 637 TSRNKNLSKQLVCLEACEKLHQVGALNDHLLPS 669
            +  K ++KQ    E C  L + G L+DH + +
Sbjct: 661 PASKKLIAKQSAAFETCLLLRKHGLLDDHFVST 693



 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 157/435 (36%), Gaps = 128/435 (29%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P SV    +  P+++ R+ES ++A +      C   +  I   L LEALT         
Sbjct: 978  IPASVAAFAFAFPAIISRIESYLIALEA-----CQELDLPISPELALEALTKDSDNTDEH 1032

Query: 1068 -------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                     G  +++  ERLE LGD  LK A S  LF   P   E     +R   VCN  
Sbjct: 1033 RAQQIHFQRGMGKNY--ERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLVCNQN 1090

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L K     KL  +IR  +F  R W   G L+L               L GK   Q     
Sbjct: 1091 LFKTAVRFKLYEFIRSQSFSRRGWYPEG-LTL---------------LQGK--GQSKGAT 1132

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGA----------YYVGGGLIAALY------MMKWL 1224
              K        +  KTIAD  EALIGA          + +    + AL       ++ W 
Sbjct: 1133 ENKHA------LADKTIADVCEALIGACCLLASKNHRFDIAVKAVTALVSSDDHNVLNWE 1186

Query: 1225 GIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY 1284
                   +      +  A+       ++    ++ K+GY F    LL+ A TH S    +
Sbjct: 1187 QYSRLYSLPKYQTAVVDAA------ELDLAAQVKKKLGYVFKYPKLLRSAFTHPSYPSAW 1240

Query: 1285 ----CYQN--------------------------------------------------LY 1290
                CYQ                                                   L+
Sbjct: 1241 ARVPCYQRLEFLGDALLDMACVEHIYHKHPDKDPQWLTEHKMAMVSNKFLGSVAVRLGLH 1300

Query: 1291 KHLQHCSTLLLSQITEYVKSFP----KPGETTDSGP-SMKAPKALGDLLESIVGAVLIDT 1345
             HL H ST L SQIT YV+       + G++ D+   +   PK L D++E+ +GA+ ID+
Sbjct: 1301 SHLNHFSTSLQSQITNYVEEIEAAELESGDSPDAWTLTSDPPKCLPDMVEAYIGAIFIDS 1360

Query: 1346 KLNLDEVWRIFKPIL 1360
              + + V   F+  L
Sbjct: 1361 NFSFEVVEEFFQKFL 1375


>gi|336468520|gb|EGO56683.1| hypothetical protein NEUTE1DRAFT_123167 [Neurospora tetrasperma
           FGSC 2508]
          Length = 1529

 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 162/626 (25%), Positives = 268/626 (42%), Gaps = 72/626 (11%)

Query: 86  AIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQC-WQKEIN 143
           ++K N     I FL PTV L  QQ+ V++      +     G  GVD W  Q  W   + 
Sbjct: 87  SLKQNIIVARIWFLTPTVALARQQHQVLQSQIPSVKAIMLCGQDGVDSWSEQAVWDAVLL 146

Query: 144 KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--- 200
              ++V T QIL DA   +F+ LD +  IVIDE H+ +G+HP  ++M E Y  +      
Sbjct: 147 NVRIVVSTYQILFDANAHSFVRLDSLSLIVIDEAHNCSGSHPIARLMTEAYLPAKKAGLP 206

Query: 201 -PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS--QVFTIEDKTEMEVFVPSAKESC 257
            P + G+TASP+    ++        I +LE  LD+  +  TI  + E+   V   +   
Sbjct: 207 VPSILGLTASPLKSNNLAD-------IEKLEQVLDAVCRTPTIH-REELLAHVNRPEMLV 258

Query: 258 RFYDQSKFCGS-----DLKGKLEVSWSKFDAS------LSKLQGSQL--NCYKDMDDKHK 304
             Y  SK  G+     DL  +   ++ + D S      L K Q ++      + M  K  
Sbjct: 259 VSYGDSKGPGTEPTPTDLMTRFLEAYHRLDISKDPDVLLLKAQRTERAREKLRQMVTKKD 318

Query: 305 TL-RKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEE 363
           TL +K+L   + + L    E+G   A   +   +  +L   E  E   Q       ++ E
Sbjct: 319 TLAQKELRGVYNRALLVRREIGPWAADYYLTRTVSHMLAELERGEPPAQHR-----YIGE 373

Query: 364 VLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVER 423
            L  I   +P   K  +              +S K+  LL++  S  +    + I+FV+ 
Sbjct: 374 ALRSI--PIPAISKEPIQ-------------LSPKVQTLLKVLASHQQDP--VGIVFVKE 416

Query: 424 IIAAKVVERFVKKVPFL-------THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
            +   +V   +   P         + +  A + G   +   +T K     LE FR G+ N
Sbjct: 417 RVMVSIVTHIISTHPLTKDRYRTASMIGTASVPGKARNHMDMTKKEDMTSLEGFRRGRFN 476

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           LL AT V+EEG+ VP C+ VI FD P  + S+IQ RGRAR+ +S   LM++  + +    
Sbjct: 477 LLVATSVLEEGIDVPICNLVICFDEPSNIKSFIQRRGRAREVSSTLYLMVQNASGESAMD 536

Query: 537 LFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEM 596
             ++ R  +   +  + ++ E   L            VESTGA +T     + ++ +C  
Sbjct: 537 WHNLERLMKERYEDEMRQNAELELLDDPRIGSYPVLEVESTGARMTIRDVRSHLNHFCAK 596

Query: 597 LPS-DKYYTPKPIFKYK--SAEEAYECELT-LPSNAPFQTIVGPTSR---------NKNL 643
           + S  +Y   +P F  +  S + A     T L +       + P  R         ++ L
Sbjct: 597 VSSRSRYLQKEPYFVIRQVSPDPASPGRRTLLQATVHLPASLAPDLRRHESLWTWTSEKL 656

Query: 644 SKQLVCLEACEKLHQVGALNDHLLPS 669
           +      +A + L+  G +N++LLP+
Sbjct: 657 AIMDASFQAYKALYNAGLVNENLLPT 682



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 152/349 (43%), Gaps = 51/349 (14%)

Query: 1009 PELLVRVD-VPISVVKSLYLLPSVMQRLE-SLMLASQLREEINCHSRNFHIPSSLILEAL 1066
            P   +R+D  P    +   ++P+  + +E SL+ A  +   + C   + ++P  LI  AL
Sbjct: 919  PSTQIRMDNFPAVFAQVGAVIPAFTRAVEMSLVAADLMYNRLGCLQLD-NLP--LITTAL 975

Query: 1067 TTLGCCESFSMERLELLGDSVLKY-------AVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
             + G     + ERLE +GD++LK+       A+S H  +  P  HE  LS  +   V N 
Sbjct: 976  ISSGSRGPTNYERLEFIGDTILKFCACLTASALSAHHSIV-PNHHERLLSQWKDKLVNNV 1034

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKV 1179
             L +   D  L  YI  SA   ++W        RP   E  +D ++ P   +        
Sbjct: 1035 RLCRASRDFGLDEYIIHSAAS-KKW--------RPKFVEDYLDEMKSPESAET------- 1078

Query: 1180 VVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMK-WLGIDADLEVSLVDDC 1238
                      R M SK +AD  E+LIGA Y+ GG+  AL  +   L      +    +  
Sbjct: 1079 ----------RQMSSKMVADVVESLIGAAYMCGGMSKALECVALLLPTPKSSQFKWQEIS 1128

Query: 1239 ITRASLRSYVPR----INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQ 1294
            ++RA L  + P+      +++ +E  + Y F  K LL EA+TH S       ++ Y+ L+
Sbjct: 1129 LSRAQLFEFAPKDAILSKQLEPLEKAMSYTFHKKSLLIEAMTHPSCAGLSTNESCYELLE 1188

Query: 1295 HCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLI 1343
                 +L  I   VK         ++GP+  A   + + L S+V A ++
Sbjct: 1189 FLGDAILDVIV--VKRL-----MAETGPNELAHNDMHEHLSSVVTADIM 1230


>gi|195424855|gb|ACF96960.1| dicer-1 [Litopenaeus vannamei]
          Length = 2473

 Score =  149 bits (375), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 174/692 (25%), Positives = 291/692 (42%), Gaps = 124/692 (17%)

Query: 415  VLCIIFVERIIAAKVVERFVKKVPFL----THLTVAYLTGSTTSVDA------LTPKVQK 464
            V  +IFV     AK++ R +K++  +      +   Y   +  SV           K Q+
Sbjct: 928  VCGLIFVHHRSMAKIIYRLLKELSDIGGDFAWIFPQYTVEAKESVKEDPRAAEAEHKKQE 987

Query: 465  EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFIL 524
            EVL  FR  + N+L +T V+EEG+ VP C+ V+RFD P    SY+ S GRAR H++ +  
Sbjct: 988  EVLRRFRHHECNILVSTRVLEEGIDVPQCNLVLRFDPPTDYRSYVHSCGRARGHDTFYFH 1047

Query: 525  MLERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVEST 577
            ++ +        ++   +    ++ S     +    R+     L +        YI  + 
Sbjct: 1048 LITKNQEISFLHDMATYSAFQQVLVSHCGSVEVGTDRE----VLSSEANAAHAPYITPAE 1103

Query: 578  GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA------YECELTLPSNAPFQ 631
             A+VT  S++ L+++YC  LPSD +     ++  +  +EA      Y+C++ LP N+P +
Sbjct: 1104 -AAVTMASAIGLLNKYCAKLPSDTFTRLTAMWDVEEIKEAEALTPVYKCKIMLPINSPLK 1162

Query: 632  -TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE----------PSENNLIS 680
             TI GP  +  +L+K    LE C +LHQ+G L+D L P  +E          P  ++ + 
Sbjct: 1163 GTIEGPWQKKVSLAKMAAALECCRRLHQMGELDDQLQPVGKESMKLDDHLCAPPADDQVP 1222

Query: 681  KKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN--FACSIVTE------ 732
               E +P  GTTKR++ +       L+G    K G+ L  YK +    C I  E      
Sbjct: 1223 ---EGMPRPGTTKRRQYYYKKVAVCLTGE-QPKQGLDLFVYKLDMVLTCPIPDEQNTRGR 1278

Query: 733  -IY-----SGFVLLIESELDNDVGNFELELYLVSKTVKATVSS-SGQVHLDADQMSKAKC 785
             IY     S    +I ++  + V  F   ++  S  V   V     +V++  DQ+S  + 
Sbjct: 1279 KIYRPEQSSRSFGIITTKPISQVSGF--PVFTRSGEVVVHVQEIERKVNVTQDQLSALQY 1336

Query: 786  FQELFFNGL--FGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWR 843
            F +  F  +    K  +K   + +R  F                ++PL   N    GS  
Sbjct: 1337 FHKFTFTHVLRLEKYPIKFDPTNARTAF---------------YIVPLNKFN----GSEG 1377

Query: 844  INWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVD 903
            I+W          EF+KE    G              R  P +     K           
Sbjct: 1378 IDW----------EFVKEIQSEGDP------------RPVPPQDDARKK-------FQFQ 1408

Query: 904  AKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVL 959
                +D VV+  +      + + + EI  + + +S F    D   +TF  Y+  KYG+ +
Sbjct: 1409 HDLYEDAVVMPWYRNQDQPQYFYVAEICTHLNPQSDF---PDAGFETFEKYYLTKYGLQI 1465

Query: 960  IHPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLV 1013
             +  QPLL +  +    NLL   + N  G     + + +K        Q  + + PEL  
Sbjct: 1466 CNLAQPLLDVDHTSGRLNLLTPRHVNRKGVALPTTSEETKRAKRENLQQKQI-LVPELCT 1524

Query: 1014 RVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
                P S+ +    LP+++ R+ +L+LA QLR
Sbjct: 1525 IHPFPASLWRKAVCLPTILYRINALLLADQLR 1556



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 173/399 (43%), Gaps = 93/399 (23%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++  L+ TYP++HEG+LS  RS  V N 
Sbjct: 1963 SVILQALTMSNANDGVNLERLETIGDSFLKYAITTFLYCTYPQRHEGKLSYLRSKQVSNL 2022

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVP---CECGV-----DTLEVPLDG 1170
             L++LG  + L   +  + F+P   W+ PG    R +     + GV     +  ++P   
Sbjct: 2023 NLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPRELEEALIDSGVPAGHWNMADLPGLH 2082

Query: 1171 KFFTQDTKVVVGK----------------------PCD---------MGHRWMGSKTIAD 1199
               + + + +V +                      P D         +    +  K+IAD
Sbjct: 2083 DLASDEIRRLVQERSEQIKRSKSEQATSELMATQNPHDPPIFIPYNLLTQHSIPDKSIAD 2142

Query: 1200 CAEALIGAYYVGGGLIAALYMMKWLGIDA---DLEVSL-VDDCITRASLRS------YVP 1249
            C EALIGAY    G   AL  M WLGI      LE S    + IT   L S      + P
Sbjct: 2143 CVEALIGAYLTTCGPRGALLFMSWLGIKVLPCTLESSPEACELITYGHLESPQSPPYHCP 2202

Query: 1250 RINEIKDI----------ESKIGYEFTVKFLLQEAITHASVQEFYCYQN----LYKHLQH 1295
              +  K++          E KIGY F  +  L +A THAS      Y+N     Y+ L+ 
Sbjct: 2203 LTDTRKELDLLLSGYQVFEEKIGYTFRDRSYLLQASTHASY-----YKNRLTDCYQRLEF 2257

Query: 1296 CSTLLLSQ-ITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVL---IDTKLNLDE 1351
                +L   IT ++    +            +P AL DL  ++V   +   +  K +  +
Sbjct: 2258 LGDAVLDYLITRHLYEDKR----------QHSPGALTDLRSALVNNTIFASLAVKYDYHK 2307

Query: 1352 VWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKE 1390
             +R F P       PD++    +R+ +++ +  G+ + E
Sbjct: 2308 YFRHFSP------GPDRV----IRDFVKMQEENGHKINE 2336



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 146/337 (43%), Gaps = 27/337 (8%)

Query: 38  STNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS---NGFKK 94
           + +S  F PR YQ+++ +   + NT++VL + + +T +  M+ +++A   +S    G  +
Sbjct: 9   NVHSTIFTPREYQVELVDACLKGNTLSVLASRSTRTFLITMVTREMAHLTRSKEQGGKGQ 68

Query: 95  LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
             +    +   + +  + I+ +T+  V  Y   + V+ W    W +   +  V++MT  +
Sbjct: 69  RTLLTGWSGPGLVRAGEAIQQNTNLAVTTYTRLEQVEGWLPSRWSQTFTEAQVIIMTVDV 128

Query: 155 LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRK 214
           L   L    L LD++  +VI + H      P  K++           ++ GMT SPV+  
Sbjct: 129 LEKGLETGLLQLDMLNLLVITDAHRVATFPPLIKVLNLC-----RGCRILGMT-SPVLSH 182

Query: 215 GVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKES---CRFYDQSKFCGSDLK 271
             S     E  ++ L+      V T  +   +  +V    E    CR  D  +    +L+
Sbjct: 183 ACSPPQ-LESFLTHLQDATSCVVDTSSEIVTVLRYVNKPVEKIVMCRDPDPDERSEVELE 241

Query: 272 GKLEVSWS-------KFDASLSKLQGSQLNCY-KDMDDKHKTLRKQLSDYHAKILYCLDE 323
            +  V  +       ++D  L ++ G +   +  D+ D +K  R+ L D+    L  L+ 
Sbjct: 242 VRRLVGEALSFLDNHRYD--LVEVYGPEYQEFCDDLPDPNKEPRQILMDF----LDVLNN 295

Query: 324 LGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYF 360
           LGL CA  A    L +V K +++    R   L C  F
Sbjct: 296 LGLWCADRAALYALVEVEKLKKKTAYDRHYLLLCMIF 332



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 14/129 (10%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELC 1381
            ++ PKALGD+ ES+ GA+ +D+  +LD VW ++  ++ P +      +P  P+REL+E+ 
Sbjct: 2352 IEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCPEIERFSGVVPKSPIRELLEME 2411

Query: 1382 DSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLE 1437
                 F K        +V  ++R+ ++   + G+G      R+ + AK  AA + L+ L+
Sbjct: 2412 PETAKFGKPE-----RLVDGKVRVSVE---IFGKGSFSGVGRNYRIAKSTAAKRALRHLK 2463

Query: 1438 VCEKRISKG 1446
              +   ++G
Sbjct: 2464 KLQMMANQG 2472


>gi|193582606|ref|XP_001943370.1| PREDICTED: endoribonuclease Dcr-1-like [Acyrthosiphon pisum]
          Length = 1626

 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 132/470 (28%), Positives = 195/470 (41%), Gaps = 115/470 (24%)

Query: 1054 NFHI-PS-SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            N+H  PS S++L+ALTT    + + +ERLE +GDS LKYAV+ +L+ T+   HEG LS  
Sbjct: 1181 NYHPGPSPSILLQALTTANAIDGYDLERLETIGDSFLKYAVTAYLYCTHNNVHEGILSDL 1240

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGK 1171
            RS  V N  L++LG  +     +  + F+PR    P        PC  G   LE      
Sbjct: 1241 RSNHVSNLNLYRLGKLKMFGERMISTKFEPRSNWLP--------PCYIGPHKLE------ 1286

Query: 1172 FFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLE 1231
                  K V+     +       K+IADC EALIGAY +  G   AL  M WLGI     
Sbjct: 1287 ------KAVINSNISITQHITNDKSIADCVEALIGAYLISCGTRGALLFMSWLGITV--- 1337

Query: 1232 VSLVDDCITRASLRSYVPRINEIKD--------------IESKIGYEFTVKFLLQEAITH 1277
            ++ +DD           P +  + D               E  +GY F  +  L +A+TH
Sbjct: 1338 LNTLDDSKLGYLKLPPSPLLRNVNDPEGELTKLMDGFESFEQHLGYYFQDRSYLLQAMTH 1397

Query: 1278 ASVQEFY------CYQNL------------------------------------------ 1289
            AS   +Y      CYQ L                                          
Sbjct: 1398 AS---YYPNCLTDCYQRLEFLGDAVLDYLITRHLYEDKRRHPPGALTDLRSALVNNTIFA 1454

Query: 1290 --------YKHLQHCSTLLLSQITEYVKSFPKPGETTD------------SGPSMKAPKA 1329
                    +K+L+H S  L   +  +V    + G T D                ++APK 
Sbjct: 1455 SLAVKNGFHKYLKHLSPGLSEVVYRFVAIQEENGHTIDEEFCFSGEDDFEDAEDVEAPKV 1514

Query: 1330 LGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYF 1387
            LGD+ ES+ GA+ +D+ ++LD VW+++  I+   +      +P  P+REL+EL  +   F
Sbjct: 1515 LGDIFESVAGAIYLDSNMSLDAVWKVYHKIMENEIKQFSKNVPISPVRELLELEPNTAKF 1574

Query: 1388 VKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
             K    + G  V   + +  K V    +G  R+ + AK  AA   L  L+
Sbjct: 1575 SKPEKLVDGRRVRVIVEILGKGVF---KGIGRNYRIAKCTAAKCALNHLK 1621



 Score =  101 bits (252), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 143/306 (46%), Gaps = 51/306 (16%)

Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
           K Q+ +L+ FR    N+L  T  +E G+++P C+ VI ++LP +  SY+ S+ +AR  ++
Sbjct: 479 KTQENILKRFRQRNCNVLIGTKELETGINLPRCNLVINYNLPLSYKSYLMSKSKARTLDA 538

Query: 521 QFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACT----------YVKTK 570
            ++LM            FD   + + ++   L +D     L  CT          Y    
Sbjct: 539 YYVLM------------FDEHATSKILSCCQLYKDINQMLLSHCTLKDIDMEKEIYADRF 586

Query: 571 SYIV-------ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA----EEAYE 619
           ++ V       +   A V   +++ L++RYC  LPSD +    PI+K +S     +  + 
Sbjct: 587 NWFVSPFKPGKKEDSAFVDMATAIGLVNRYCAKLPSDTFTKLSPIWKIQSIVYENQPMFV 646

Query: 620 CELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEP----- 673
           C + LP N+P +  I G     + L+K++  LE C +++  G L+D L P  +E      
Sbjct: 647 CSIRLPINSPIKHEIHGHPMPCEILAKRIAALEVCRQIYSQGQLDDTLQPITKESFHALF 706

Query: 674 --------SENNLIS-KKNESLPGAGTTKRKELHGTTPIRALSG-RWGEKCGVILHAYKF 723
                   +E++LI+ K  +S+P  GT KR++ +      AL+  R  E     L+A   
Sbjct: 707 NTDEIIPDTEDSLITCKTKDSMP--GTYKRRQHYYKRTAEALNDCRPVEGKPCHLYAILL 764

Query: 724 NFACSI 729
           N  C I
Sbjct: 765 NITCPI 770



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 15/204 (7%)

Query: 40  NSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFL 99
           N+  F P+ YQ+++   AK +N I  LE    K  + + LI+++A  +     K+    L
Sbjct: 10  NTKTFTPQEYQVEILSSAKNKNVIISLEGITNKVFVILKLIQELAFKMHRKSEKRKWTLL 69

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
                 V Q    IR  TD +  E    + VD  D   +       DV+V T  + L+  
Sbjct: 70  VLEEAEVDQYMFSIRHLTDLKPLE---IRSVDHSDFINY-------DVIVTTENLCLEIF 119

Query: 160 RKAFLSLDIVCFIVIDECHH-ATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSS 218
            K  L  D +   + + C      N  Y KI    + KS+++ ++ G+   P+     S 
Sbjct: 120 EKNCLHFDQLSLAIFNNCQKIIVENSTYFKICN--FIKSNSQCRILGI-VHPLFELD-SD 175

Query: 219 AMDCEGQISELESTLDSQVFTIED 242
            +  E Q+  +   L S + T  D
Sbjct: 176 PLFIENQLKFISHKLFSSIETASD 199



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 13/164 (7%)

Query: 891  GKDVIHLANGSVDAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKT 946
             +D IH      D + LKD VV   +  +     + + EI  + + +SPF   T+   KT
Sbjct: 901  NEDRIHF---QPDIEVLKDAVVTPWYRNQEQPEYFYVEEICTHLNPKSPFPDPTEK-YKT 956

Query: 947  FVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQMHV 1005
            F +++  KY + + +  QPLL +  +    N L   + +  G    + S    +  +  +
Sbjct: 957  FEDFYYHKYSLKIQNLEQPLLDVDPTSARLNFLTPRYMNCKGEYLPTSSDATKRAKRYDL 1016

Query: 1006 H----MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
                 + PEL      P S+ +    LPS++ R+ +L+LA ++R
Sbjct: 1017 SHKQILVPELCNIHLFPASMWRDAVSLPSILYRINALLLADEIR 1060


>gi|315044595|ref|XP_003171673.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893]
 gi|311344016|gb|EFR03219.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893]
          Length = 1518

 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 10/227 (4%)

Query: 41  SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD-IAQAIKSNGF---KKLI 96
           SI   PR YQL++FE AK +N IAVLETG+GKT+IAV+L+K  I Q +   G     ++ 
Sbjct: 106 SIIHDPREYQLELFEKAKEKNIIAVLETGSGKTLIAVLLLKHVIEQELTDRGVGLPPRIS 165

Query: 97  IFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
            FL  +V LV+QQ  V++ +   +++++ GA   D W+ + W+    +N V+V T ++L 
Sbjct: 166 FFLVDSVTLVYQQAAVLQNNIPQKIDKFCGAMQTDLWNKETWEGHFKRNMVIVCTAEVLH 225

Query: 157 DALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-DNKPKVFGMTASPVVRKG 215
             L  +F+ +  +  ++ DE HHA   HPY +I+K+FY K  + KP++FGMTASP     
Sbjct: 226 QCLLHSFIQIGQINLLIFDEAHHAKKEHPYARIIKDFYLKELERKPRIFGMTASP----- 280

Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ 262
           V + ++       LE+ LDSQ+ T  + + +   V    E    YD+
Sbjct: 281 VDAKVEVVSAAKTLENMLDSQIATASNPSLLRQSVARPIEEVWEYDR 327



 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 136/270 (50%), Gaps = 12/270 (4%)

Query: 409 FGKSTQVLCIIFVERIIAAKVVERFVKKVP---FLTHLTVAYLTGSTTSVDALTPKVQKE 465
           F ++    CI+F  +   A+++    +K+       +L V   +G       ++ + Q  
Sbjct: 447 FKENPDTRCIVFTAQRHTARILRDLFQKIRSQYIRPNLLVGVRSGGDKIGLDISFREQFL 506

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
            + +FR G++N LFAT V EEG+ + +C+ ++RFDL  T+  YIQSRGRAR   S F  M
Sbjct: 507 NVIAFRKGEINCLFATSVAEEGLDIQDCNLIVRFDLYSTLIQYIQSRGRARHTESTFAHM 566

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYV--------KTKSYIVEST 577
           +ER NL     + ++ RSE  +T    S  PE   LK    +        + KSYI++ST
Sbjct: 567 VERNNLIHETAVEEVRRSEEVLTRFCKSL-PEDRLLKGSGDIDMIMEKDRQQKSYIIKST 625

Query: 578 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPT 637
           GA +T  SS+ ++  Y   L  +K  + +  +     + A+ CE  LP  +P +  +G +
Sbjct: 626 GAKLTYPSSLAVLAHYASTLQYEKELSTQVSYIIHPKDGAFICETILPEKSPIRGCMGKS 685

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
           +  K  +KQ    E C  L +   L+++ +
Sbjct: 686 ASRKLFAKQSAAFETCLLLRKNKLLDEYFI 715



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 160/448 (35%), Gaps = 114/448 (25%)

Query: 997  NTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFH 1056
            N K   +  ++  E L    + + +   +++ P+++ R+ES ++A +      C      
Sbjct: 983  NQKSATVDYYVCVEALKISSISVPLATQIFVFPAMIWRMESYLIALEA-----CEKLQLK 1037

Query: 1057 IPSSLILEALTTLG-CCESFSME-------------RLELLGDSVLKYAVSCHLFLTYPK 1102
            IP  L LEALT      E + ME             RLE LGD  LK A S  LF   P 
Sbjct: 1038 IPPELALEALTKDSENTEDYGMEQIKFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPD 1097

Query: 1103 KHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVD 1162
              E     +R   +CN  L       ++  +IR  +F  R W   G   L+      G D
Sbjct: 1098 NDEYDYHVKRMLLICNQNLFNNAIILEIFKFIRSRSFSRRAWYPEGLTLLK------GKD 1151

Query: 1163 TLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL-----IAA 1217
              E P                  +     +  KTIAD  EALIGA  + GG      +A 
Sbjct: 1152 KKEGP------------------NGPEHALADKTIADVCEALIGASLLAGGPDHKFDMAT 1193

Query: 1218 LYMMKWLGIDADLEVSLVDDCITRASLRSY------VPRINEIKDIESKIGYEFTVKFLL 1271
              +  ++  D D  V    D     SL SY         I+    I+SK+GY F    LL
Sbjct: 1194 KAVTVFVNSD-DHRVERWADYSKLYSLPSYQTAVASASEIDVANQIKSKLGYCFRYPKLL 1252

Query: 1272 QEAITHASVQEFY----CYQ---------------------------------------- 1287
            + A  H S    +    CYQ                                        
Sbjct: 1253 RSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSN 1312

Query: 1288 ----------NLYKHLQHCSTLLLSQITEYVKSFPK-----PGETTDSGPSMKAPKALGD 1332
                      NL+ HL H S  L  QIT Y +          G       + + PK L D
Sbjct: 1313 KFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEGNLEAWTYTNEPPKCLPD 1372

Query: 1333 LLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
            ++E+ +GA+ +D+  N D V   F+  +
Sbjct: 1373 IVEAYLGAMFVDSNFNFDVVDDFFRKFI 1400


>gi|296809942|ref|XP_002845309.1| dicer-like protein 1 [Arthroderma otae CBS 113480]
 gi|238842697|gb|EEQ32359.1| dicer-like protein 1 [Arthroderma otae CBS 113480]
          Length = 1521

 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 137/229 (59%), Gaps = 14/229 (6%)

Query: 41  SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFK-KLI 96
           SI   PR YQL++FE AK +N IAVL+TG+GKT+IAV+L+K + +   A +S G   ++ 
Sbjct: 108 SIIHDPREYQLELFEKAKEKNIIAVLDTGSGKTLIAVLLLKHVIEQELADRSLGRPPRIS 167

Query: 97  IFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
            FL  +V LV+QQ  V++ +   +++++ GA   D W+ + W+    KN V+V T ++L 
Sbjct: 168 FFLVDSVTLVYQQAAVLQNNIAQKMDKFCGAMRTDLWNKEVWEGHFKKNMVIVCTAEVLH 227

Query: 157 DALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-DNKPKVFGMTASPVVRK- 214
             L  +F+ +  +  ++ DE HHA   HPY +I+K+FY +  + KPK+FGMTASPV  K 
Sbjct: 228 QCLLHSFIRISQINLLIFDEAHHAKKEHPYARIIKDFYMREPERKPKIFGMTASPVDAKV 287

Query: 215 -GVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ 262
             VS+A         LE+ LDSQ+ T  + + +   V   +E    YD+
Sbjct: 288 QVVSAA-------KTLETMLDSQIATASNPSLLRQSVARPREEIWEYDR 329



 Score =  124 bits (311), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 140/276 (50%), Gaps = 14/276 (5%)

Query: 404 QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVD--ALTPK 461
           +L   F ++    CI+F  +   A+++    KK+    ++    L G  +  D   L   
Sbjct: 444 ELLRRFKENPDTRCIVFTAQRHTARILRDLFKKIGS-QYIRPNLLVGVRSGGDRIGLDTS 502

Query: 462 VQKEVLE--SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
            +++ L   +FR G++N LFAT V EEG+ + +C+ ++RFDL  T+  YIQSRGRAR   
Sbjct: 503 FREQFLNVIAFRKGEINCLFATSVAEEGLDIQDCNLIVRFDLYSTLIQYIQSRGRARHIE 562

Query: 520 SQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKT--------KS 571
           S F+ M+ER NL   + + ++ R+E  +     S  PE   LK    + +        KS
Sbjct: 563 STFVHMVERNNLIHESVVEEVRRAEEILVRFCKSL-PENRLLKGMDDIDSILEKDRQRKS 621

Query: 572 YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQ 631
           Y ++STGA +T  SS+ ++  Y   L  +K  + +  +     + A+ CE  LP  +P +
Sbjct: 622 YTIKSTGAKLTYPSSLAVLAHYASSLQYEKELSAQVSYVIHVKDGAFICEAILPEKSPVR 681

Query: 632 TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
             +G  +  K L+KQ    E C  L + G L+++ +
Sbjct: 682 GCMGKPASRKLLAKQSAAFETCLILRKNGLLDNYFI 717



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 161/447 (36%), Gaps = 118/447 (26%)

Query: 997  NTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFH 1056
            N K P +  ++  E L    +P+ V   +++ P+++ R+ES ++A +      C      
Sbjct: 985  NKKGPPVDYYICAEALKISSIPMPVATLIFVFPAMISRMESYLIALEA-----CEKLQLK 1039

Query: 1057 IPSSLILEALTT--------------LGCCESFSMERLELLGDSVLKYAVSCHLFLTYPK 1102
            I   L LEALT                      + ERLE LGD  LK A S  LF   P 
Sbjct: 1040 ISPELALEALTKDSENTEEHGLEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPD 1099

Query: 1103 KHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVD 1162
              E     +R   +CN  L       ++  YIR  +F  R W   G   L+      G D
Sbjct: 1100 NDEYDFHVKRMLLICNQNLFNNAIILEVFKYIRSKSFSRRGWYPEGLTLLK------GKD 1153

Query: 1163 TLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL-----IAA 1217
              E P              G P       +  K+IAD  EALIGA  + GG      +A 
Sbjct: 1154 KKENP--------------GGPTHA----LADKSIADVCEALIGASLLAGGPDHKFDMAT 1195

Query: 1218 LYMMKWLGIDADLEVSLVDDCITRASL------RSYVPRINEIKDIESKIGYEFTVKFLL 1271
              +  ++  D D  V    D  T  SL       +     +    IE K+GY F    LL
Sbjct: 1196 KAVTIFVNSD-DHRVERWADYSTLYSLTTYQTAAATASEADVANQIEEKLGYRFKYPKLL 1254

Query: 1272 QEAITHASVQEFY----CYQ---------------------------------------- 1287
            + A  H S    +    CYQ                                        
Sbjct: 1255 RSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMACVNHLFTKYPDKDPQWLTEHKMAMVSN 1314

Query: 1288 ----------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKA-------PKAL 1330
                      NL+ HL H S +L  QIT Y +         + G +++A       PK L
Sbjct: 1315 KFLGSLAVGLNLHVHLIHISNVLQGQITCYTEEL--QAMKMEMGGNLEAWTYTNEPPKCL 1372

Query: 1331 GDLLESIVGAVLIDTKLNLDEVWRIFK 1357
             D++E+ +GA+ +D+  N D +   FK
Sbjct: 1373 PDIVEAYLGAIFVDSNFNFDVIDDFFK 1399


>gi|158706448|sp|Q0UI93.2|DCL1_PHANO RecName: Full=Dicer-like protein 1; Includes: RecName:
           Full=Endoribonuclease DCL1; Includes: RecName:
           Full=ATP-dependent helicase DCL1
          Length = 1522

 Score =  146 bits (369), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 121/204 (59%), Gaps = 8/204 (3%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK----KLIIFLAP 101
           PR YQ+++F  AK +NTIAVL+TG GKT IA +L++ + +    N  K    K+  FL  
Sbjct: 69  PRDYQMELFLRAKMQNTIAVLDTGTGKTHIATLLLRHVLEEELENRAKGCAHKMAFFLVD 128

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +V+LV QQ +V+R   D  VE   GA G   +  Q W K    N V+V T Q+L+D +  
Sbjct: 129 SVNLVFQQANVLRCGLDQGVEGISGAMGQSLFQKQTWDKLFAVNMVIVCTAQVLVDCMMH 188

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HKSDN--KPKVFGMTASPVVRKGVSS 218
           +F+S+  +  ++ DE HHA  NHPY ++MK++Y H+ D   +P++F MTASPV  KG  S
Sbjct: 189 SFMSISRMNLLIFDEAHHAKSNHPYARVMKDYYAHELDTSKRPRIFAMTASPVDVKG-QS 247

Query: 219 AMDCEGQISELESTLDSQVFTIED 242
           A        ELE+ L S++ T  D
Sbjct: 248 AEHVREAARELETLLHSRIATTSD 271



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 157/321 (48%), Gaps = 26/321 (8%)

Query: 391 DLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV--PFLTHLTVAYL 448
           DL     KL   L L+  + ++T   CI+FVE+   A++++     +  P L H  V   
Sbjct: 397 DLSSKVMKLQYWLNLY--YERTTLARCIVFVEKRHTAQLLKLIFDHIGGPNL-HCDVLVG 453

Query: 449 TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
             +    + ++ + Q   L+ FR G++N LFAT V EEG+ +P C+ V+RFDL +T+  Y
Sbjct: 454 INNRAGEENVSLRSQILTLQKFRRGELNCLFATSVAEEGLDIPQCNLVVRFDLYRTMIGY 513

Query: 509 IQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD--TALSRD-------PEAC 559
           +QSRGRAR  NS+++ MLE  N +   +L +    E  + +    L+ D        E  
Sbjct: 514 VQSRGRARHRNSKYLHMLEAENKEHTERLMNARHDENIMREFCKDLTHDRQLGDVEQEKA 573

Query: 560 FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYT---PKPIFKYKSAEE 616
            L A       SY  E +GA +T  SS++++  +    PS  + T   P  +   K +++
Sbjct: 574 ELIALEDKLFPSYTDEKSGAKLTYRSSLSILSHFVATYPSPDHNTMAQPTYVVNPKISDD 633

Query: 617 -------AYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPS 669
                   + CE+ LP + P  ++VG     K ++K     + C +L +   LN+ LLP+
Sbjct: 634 PRDPQRNGFVCEVILPEHCPIISMVGQVYSRKTIAKCSAAFKMCIELRRKDHLNEFLLPT 693

Query: 670 VEE--PSENNLISKKNESLPG 688
           + +  P+  N +   +E   G
Sbjct: 694 ISKYLPAMRNALLAVSEKKKG 714



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 121/554 (21%), Positives = 198/554 (35%), Gaps = 149/554 (26%)

Query: 915  IHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFV----NYFSEKY----GIVLIHPGQPL 966
            ++ GR Y    +  +   + P   N    +  F+    ++   K+     I   H  QP+
Sbjct: 881  MNGGRRYYSDRLAPHLKPQDPVPANVPRQNHKFMKNILDFSDSKWMKSRDITRWHQDQPV 940

Query: 967  LRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLY 1026
            L++++     N L N  D     K  K   N     +  ++ PE L   ++    V   Y
Sbjct: 941  LQVEKIPFRRNHLANVED-----KEKKELAN-----LETYICPEPLHISNLATPFVVMCY 990

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------------TLGCC 1072
            +LP+++ R ES ++A        C   +  +  +L LEALT                   
Sbjct: 991  VLPAIIHRFESYLIALDA-----CDVLDLKVSPALALEALTKDSDNSEEHGEEKINFKSG 1045

Query: 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT-DRKLQ 1131
               + ERLE LGD  LK A S  +F+  P+++E +   RR   +CN  L +     +KL 
Sbjct: 1046 MGPNYERLEFLGDCFLKVATSLSVFVQQPEENEFEFHVRRMLMLCNQNLMETAVGKKKLY 1105

Query: 1132 GYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRW 1191
             Y+R  AF  R W   G   LR                GK   +  +  +    ++ H  
Sbjct: 1106 KYVRTDAFSRRNWYPEGLKLLR----------------GKGLKKTEEDWL----NVTHN- 1144

Query: 1192 MGSKTIADCAEALIGAYYV---GGGLIAALYMMKWLGIDADLEVSLV------DDCITRA 1242
            +G K++AD  EA IGA ++    GG        +W   D D  V  V      DD +   
Sbjct: 1145 LGDKSVADVCEAFIGAAFMQHHKGG--------QWTPNDWDEAVKAVKLFANSDDHLMEK 1196

Query: 1243 SLRSYVP--------------RINEIKDIESKIGYEFTVKFLLQEAITHAS--------- 1279
                Y                +++    IE K  Y F    LL+ A  H S         
Sbjct: 1197 WTDYYAAYTKPKYQTAGATATQLDLAHKIEMKHPYRFRYPRLLRSAFIHPSQPFMWENIP 1256

Query: 1280 ------------------VQEFYCYQN---------------------------LYKHLQ 1294
                              +  FY Y +                            + H++
Sbjct: 1257 SYQRLEFLGDSLLDMAFIMHLFYKYPDKDPQWLTEHKTPMVSNKFLGAVCVKLGWHTHMK 1316

Query: 1295 HCSTLLLSQITEYVKSFPKPGETTDSGPSM-----KAPKALGDLLESIVGAVLIDTKLNL 1349
              + +L SQI +YV    +     +          + PK L D++E+ V A+ +D++ + 
Sbjct: 1317 QNTAILSSQIRDYVYEVEEAEREANGAVDYWVSVSEPPKCLADVIEAFVAAIFVDSEFDF 1376

Query: 1350 DEVWRIFKPILSPI 1363
            + V + F   L P 
Sbjct: 1377 NVVQKFFDLHLKPF 1390


>gi|320585938|gb|EFW98617.1| RNA helicase rnase [Grosmannia clavigera kw1407]
          Length = 2671

 Score =  146 bits (369), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 142/544 (26%), Positives = 238/544 (43%), Gaps = 57/544 (10%)

Query: 32  VDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNG 91
            + P+   +++    R YQL++FE + ++N I  ++TG GKT +A++ I+   +      
Sbjct: 61  TEAPAEEADALVAASRAYQLEMFEESLKKNIIVAMDTGTGKTRVAILRIRTELE----RS 116

Query: 92  FKKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQC-WQKEINKNDVLV 149
             K++ FLA TV L  QQ+  I       + +   G  GVD W +Q  W   +    ++V
Sbjct: 117 PLKIVWFLATTVFLCDQQFKAIVSQIPGAQAKIITGQSGVDAWSTQAVWDAVLLNVRIVV 176

Query: 150 MTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFG 205
            T Q+LLDA+   F+ +  +  +  DE H     H   +IM EFY+ + N+    P + G
Sbjct: 177 ATHQVLLDAMHHGFVKISSISLLAFDEAHACVKEHAGKRIMSEFYYPALNRGEVVPAILG 236

Query: 206 MTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSK 264
           MTASPV           +G + +LE TL +   T +  + E+         S    D   
Sbjct: 237 MTASPV------HGTKLDG-LDKLEQTLHAVCRTPKRHRAELVAHTKQPSTSAHVCDPRA 289

Query: 265 FCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYK----DMDDKHKTLRKQ---LSDYHAKI 317
              + +          +DA   +     +  YK    D++   K   +    L  +  + 
Sbjct: 290 GLSAPIPQNAARLQQVYDAGEIRSFTENVLAYKGGEGDVEVNTKDYDRSWAFLKAFCRRT 349

Query: 318 LYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADK 377
            +   ELG   A   V   + + + A    +I  +       FL + +  +  A P+   
Sbjct: 350 CHVYAELGSWSADYYVHKVIRRCVNASNR-KIGPEGRRPYLLFLLKQVRSVAPAKPV--- 405

Query: 378 IFLDFGFDYSKAVD-LGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436
              D   D S  +  L  +S K+ +L+++ L   ++ +   I+FV+    A V+ R +  
Sbjct: 406 --YDANADCSNNISFLSCLSAKVLKLVEI-LEACEARRPTGIVFVKERPMAAVLARVLSL 462

Query: 437 VPFL-THLTVAYLTGSTT-------SVDALTP-KVQKEVLESFRGGK------------- 474
            P L       ++ G +        +   L P K  +E L+ FRGG              
Sbjct: 463 HPRLHGRFRAGHVVGMSQMYTDVYEAALVLNPRKGSQEALQLFRGGAEAGEAGRGRREGS 522

Query: 475 -VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQ 533
            +NLL AT V+EEG+ VP C+ V+  D   ++ +YIQ RGRAR+ NSQ  L+L   +L+ 
Sbjct: 523 GINLLVATSVMEEGIDVPACNLVVCIDELTSLKAYIQRRGRAREENSQMHLLLGE-DLRG 581

Query: 534 RNKL 537
           R  L
Sbjct: 582 RRAL 585



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 144/330 (43%), Gaps = 50/330 (15%)

Query: 970  KQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVD-VPISVVKSLYLL 1028
            KQ  + H ++    DG G  +G   G  +K+P   V   P    RVD +P++ V+   L+
Sbjct: 989  KQVGSLHRVVNCERDGEGEEQGGSKG-ESKRPFYTVL--PAASCRVDRMPMAAVQFGALI 1045

Query: 1029 PSVMQRLESLMLASQLREEINCHSRNFHIP---SSLILEALTTLGCCESFSMERLELLGD 1085
            P +MQ LE  ++A+    E+   +R   +P    SLI  A++        + E LE +GD
Sbjct: 1046 PPLMQVLEVHLVAA----ELLSSTRLRELPVSDRSLITTAISAPAARLHDNYEVLEFIGD 1101

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV 1145
            +VLK   + +         EG LS  +   V NS L +  T+  L  +I  S +  R W 
Sbjct: 1102 AVLKLMAAANCAAQNLDAPEGHLSLFKDRLVANSRLCRAATEFGLDRFIVGSQWSLREW- 1160

Query: 1146 APGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALI 1205
                                         +D K+   +        M +KT+AD  EALI
Sbjct: 1161 -----------------------------RDVKIEAEEEKGGEQLVMSTKTLADVVEALI 1191

Query: 1206 GAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIK---DIESKIG 1262
            GA  V GGL  AL  M+ L  +    +SL     TRA+L +  P+    +    +E  +G
Sbjct: 1192 GAALVDGGLTRALECMRILLPERQPWLSLEK---TRATLFAAAPKQTTWRIPTTLEELLG 1248

Query: 1263 YEFTVKFLLQEAITHAS---VQEFYCYQNL 1289
            Y+F    LL EA+TH S   ++E  C + L
Sbjct: 1249 YQFRRPSLLAEAMTHPSTPGIREGGCMERL 1278


>gi|194225335|ref|XP_001496219.2| PREDICTED: endoribonuclease Dicer [Equus caballus]
          Length = 1785

 Score =  146 bits (368), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 168/314 (53%), Gaps = 31/314 (9%)

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV----- 462
           T +LC IIFVER   A V+ R +K+     P L +++  ++TG     +    K      
Sbjct: 303 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEF 362

Query: 463 --QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
             Q+EVL  FR  + NLL AT ++EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S
Sbjct: 363 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 422

Query: 521 QFILMLERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYI 573
            +I++ +         +LK    +  I+R++ S +      D E        +     Y+
Sbjct: 423 NYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIEPVVDDDDVF---PPYV 479

Query: 574 V--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPF 630
           +  E  G  VT ++++  I+RYC  LPSD +    P  + +   +  +   L LP N+P 
Sbjct: 480 LRPEDGGPRVTVNTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPL 539

Query: 631 Q-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNES 685
           + +IVGP      L++++V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S
Sbjct: 540 RASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETS 599

Query: 686 LPG-AGTTKRKELH 698
           +PG  G+TKR++ +
Sbjct: 600 VPGRPGSTKRRQCY 613



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 1052 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            SR       LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  
Sbjct: 1152 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYM 1211

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            RS  V N  L++LG  + L   +  S FDP   W+ PG
Sbjct: 1212 RSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1249



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1668 PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1727

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1728 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1779

Query: 1441 KRI 1443
             ++
Sbjct: 1780 PQV 1782



 Score = 43.9 bits (102), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 819  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 878

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 879  SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 937


>gi|14475569|emb|CAC41974.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
          Length = 1883

 Score =  146 bits (368), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 155/534 (29%), Positives = 254/534 (47%), Gaps = 52/534 (9%)

Query: 42  INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDI----AQAIKSNGFKKLII 97
           +  IPR YQ++ +  + + NT+ VL TG GKT++++M + ++     Q       K++ +
Sbjct: 27  VEIIPRDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIAL 86

Query: 98  FLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
           FL   V LV QQ   I   T+ +V + YG        +    KE    DVLV T   L++
Sbjct: 87  FLVDRVPLVTQQAGAIEAITNLKVCKLYGEINDSRTRAFVRSKEY---DVLVSTVGSLVN 143

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKG 215
            L    L++    FI  DE HHATG H + K++ ++  K+D   +P++ G+TAS +V  G
Sbjct: 144 LLEVRHLNILDFYFITFDEVHHATGEHDFNKVV-DYIRKTDLNYRPRILGLTAS-LVSIG 201

Query: 216 VSSAMDCEGQISELESTLDSQVFT----IEDKTEMEV------FVPSAKESCRFYDQSKF 265
            S+    +  I ++E  + S+VF     + + T+ E+      F  S +ES       +F
Sbjct: 202 NSTIDIVQRSIKDMEERMLSRVFKPTSLLTNSTQSELQPELVSFKTSGQESLIETSICEF 261

Query: 266 CGSDLKGKLEVSWSKFDASLSKLQG--SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
             S+ K +L++  +  D  L  ++G  S L   + +D   K L     +Y  K+L  L  
Sbjct: 262 LVSNSK-ELQIFLNYSDVDLDGVRGNPSFLKALERLDKYSKQLESIYIEY-TKVLIELYA 319

Query: 324 LGLICAYEAVKICLEKV----LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
           L  + + E  K  L ++        +E E+Y +        L E+ + I       +  F
Sbjct: 320 LLSVLSTEGPKQVLTRLDLLMQSTNQENELYNK--------LLELRYYISGQYEDRESNF 371

Query: 380 LDFGFDYSKAVD-LGY-ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437
                 Y K +  L Y IS      LQ      K  ++L  +FVE    A  +   +KK 
Sbjct: 372 EKGSTRYRKLISSLEYAISDASDGELQ------KDLRIL--VFVETRFGASNLTSMLKKE 423

Query: 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
           PF  +L    L G    VD +  + Q+ ++  FR GK  L+  T+V+EEG+ V +C+ VI
Sbjct: 424 PFQEYLHTKRLVGHN-GVDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEGIDVQDCNIVI 482

Query: 498 RFDLPKTVSSYIQSRGRARQHN-SQFILMLERGNLKQRNKLFDIIRSERSVTDT 550
            +D   ++ S IQ RGRAR  N S+FI++    N  +  K+ DI+ SE  + ++
Sbjct: 483 CYDGILSLKSLIQRRGRARSKNESKFIIIY---NDDKDLKILDILSSENLLNNS 533


>gi|356555908|ref|XP_003546271.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max]
          Length = 285

 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/142 (47%), Positives = 98/142 (69%), Gaps = 1/142 (0%)

Query: 49  YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
           YQL+  + A R NTI  LETG+GKT+IAVML++  A  ++     ++ +FL P V LV Q
Sbjct: 29  YQLEALDNAIRENTIVYLETGSGKTLIAVMLLRSYAHHLRKPS-PQISVFLVPQVVLVSQ 87

Query: 109 QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI 168
           Q + ++ HTD +V  ++G  GVD WD+  W++E+ K++V VMTP ILL+ LR +FL L++
Sbjct: 88  QAEAVKKHTDLKVGMFWGDMGVDFWDATTWKQEVEKHEVFVMTPAILLNCLRHSFLKLNL 147

Query: 169 VCFIVIDECHHATGNHPYTKIM 190
           +  +++DECHHA G HPY  IM
Sbjct: 148 IKVLIMDECHHARGKHPYACIM 169



 Score = 70.9 bits (172), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 66/111 (59%), Gaps = 2/111 (1%)

Query: 1329 ALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGY-F 1387
             LGD++ES+ GA+L+D++ N + VW+  +P+L P+VTP+ L+L P+REL ELC    Y  
Sbjct: 171  VLGDIIESLAGAILVDSRFNKEVVWQSIRPLLEPLVTPETLKLHPIRELNELCQKRSYKI 230

Query: 1388 VKENCTLKGEMVHAELRLQLKDVLLVGEGQERS-RKAAKGKAASQLLKKLE 1437
            V E+ + K  + +  + L+   V+   E    + R  AK  A  ++L  L+
Sbjct: 231  VLEDVSRKDGVTNYRMELEADGVIHEYEYTGPALRDTAKKIACKEILNSLK 281


>gi|66804721|ref|XP_636093.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
 gi|60464394|gb|EAL62541.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
          Length = 2417

 Score =  145 bits (367), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 155/534 (29%), Positives = 254/534 (47%), Gaps = 52/534 (9%)

Query: 42  INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDI----AQAIKSNGFKKLII 97
           +  IPR YQ++ +  + + NT+ VL TG GKT++++M + ++     Q       K++ +
Sbjct: 280 VEIIPRDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIAL 339

Query: 98  FLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
           FL   V LV QQ   I   T+ +V + YG        +    KE    DVLV T   L++
Sbjct: 340 FLVDRVPLVTQQAGAIEAITNLKVCKLYGEINDSRTRAFVRSKEY---DVLVSTVGSLVN 396

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKG 215
            L    L++    FI  DE HHATG H + K++ ++  K+D   +P++ G+TAS +V  G
Sbjct: 397 LLEVRHLNILDFYFITFDEVHHATGEHDFNKVV-DYIRKTDLNYRPRILGLTAS-LVSIG 454

Query: 216 VSSAMDCEGQISELESTLDSQVFT----IEDKTEMEV------FVPSAKESCRFYDQSKF 265
            S+    +  I ++E  + S+VF     + + T+ E+      F  S +ES       +F
Sbjct: 455 NSTIDIVQRSIKDMEERMLSRVFKPTSLLTNSTQSELQPELVSFKTSGQESLIETSICEF 514

Query: 266 CGSDLKGKLEVSWSKFDASLSKLQG--SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
             S+ K +L++  +  D  L  ++G  S L   + +D   K L     +Y  K+L  L  
Sbjct: 515 LVSNSK-ELQIFLNYSDVDLDGVRGNPSFLKALERLDKYSKQLESIYIEY-TKVLIELYA 572

Query: 324 LGLICAYEAVKICLEKV----LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
           L  + + E  K  L ++        +E E+Y +        L E+ + I       +  F
Sbjct: 573 LLSVLSTEGPKQVLTRLDLLMQSTNQENELYNK--------LLELRYYISGQYEDRESNF 624

Query: 380 LDFGFDYSKAVD-LGY-ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437
                 Y K +  L Y IS      LQ      K  ++L  +FVE    A  +   +KK 
Sbjct: 625 EKGSTRYRKLISSLEYAISDASDGELQ------KDLRIL--VFVETRFGASNLTSMLKKE 676

Query: 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
           PF  +L    L G    VD +  + Q+ ++  FR GK  L+  T+V+EEG+ V +C+ VI
Sbjct: 677 PFQEYLHTKRLVGHN-GVDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEGIDVQDCNIVI 735

Query: 498 RFDLPKTVSSYIQSRGRARQHN-SQFILMLERGNLKQRNKLFDIIRSERSVTDT 550
            +D   ++ S IQ RGRAR  N S+FI++    N  +  K+ DI+ SE  + ++
Sbjct: 736 CYDGILSLKSLIQRRGRARSKNESKFIIIY---NDDKDLKILDILSSENLLNNS 786


>gi|348680026|gb|EGZ19842.1| hypothetical protein PHYSODRAFT_558487 [Phytophthora sojae]
          Length = 2706

 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 147/569 (25%), Positives = 248/569 (43%), Gaps = 68/569 (11%)

Query: 35  PSSSTNSINFIPRI-------YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI 87
           P+ ++   +F PR        YQ+++   A   NTI  L TG GKT++A+ +++++    
Sbjct: 203 PTEASIRNHFRPRAKMSKLRRYQVELTLSALLENTIVYLPTGCGKTLVAIKVMEEM---- 258

Query: 88  KSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDV 147
           K     KL++F  PT  LV QQ   IR  ++F+V E+ G  G     +    K     D 
Sbjct: 259 KHLNPDKLVVFFVPTGPLVSQQAAYIRRESNFQVAEFSGQHGRTTAATSAPIKVDGGFDA 318

Query: 148 LVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN-KPKVFGM 206
           +V+TPQ  L+ L     S+     +V DE HHATGNHPY +++K         +P +  +
Sbjct: 319 VVVTPQYFLNLLFNGRTSITDYSTMVFDEAHHATGNHPYCELLKNLATVDLRVRPHILAL 378

Query: 207 TAS-----------PVVRKGVSSAMDC-----EGQISELESTL---DSQVFTI-EDKTEM 246
           TAS           P   + ++ A +           +LE++    ++Q  T+ ED++E 
Sbjct: 379 TASPFGEGVREASGPTALRKLADAYNAVVNAPTIAADDLEASFIPKEAQWVTVQEDESER 438

Query: 247 EVFVPSAKESCRFYDQSKFCG-SDLKGKL---EVSWSKFDASLSKL---------QGSQL 293
           +V     +E  + Y QS +   + L G++   E ++   D  LS+          Q   +
Sbjct: 439 KV-----REGIKRYIQSFYAEIARLLGQVMPFEANYDTNDMELSQFLAKLRLLREQAESM 493

Query: 294 NCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA------YEAVKICLEKVLKAQEEC 347
              K   D   T  ++     + +   L+ L  + +              E + +   E 
Sbjct: 494 EIRKTNGDAETTGVEKSKRQPSDLELVLEHLRKVASSFYTLSIHGAGTVAESLHRIFGEL 553

Query: 348 EIYRQSSLQCKYFLEEVLH--VIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQL 405
           E    +  +  + L E  +  ++  AL       + F  D     D   IS ++H +   
Sbjct: 554 EASSSNKGRRTFALVETRYRAIMSPAL-------IHFPLDTFTGSD---ISNRVHLVADC 603

Query: 406 FLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKE 465
                       I+FV R   A V+ + ++ +  L  L      G  +       + Q+ 
Sbjct: 604 IRKANFDHDSRAIVFVRRRKTAIVLAKAMESLEVLRELNPTRFVGHNSYEGMSWEEEQRP 663

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
            L+ FR G++ LL AT+V+EEG+ VP CS VI+FD    V+S IQSRGRAR  +S FI+ 
Sbjct: 664 TLDRFRQGRIRLLVATNVLEEGLDVPECSLVIQFDGVVGVTSLIQSRGRARHRDSSFIIF 723

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSR 554
                 ++  +L +  +   S+ + A SR
Sbjct: 724 CSAVGKERNQRLVENEKRLVSLANMAASR 752


>gi|195997771|ref|XP_002108754.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
 gi|190589530|gb|EDV29552.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
          Length = 1018

 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/215 (40%), Positives = 119/215 (55%), Gaps = 9/215 (4%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK----SNGFKKLIIFLAP 101
           PR YQ ++ E A R N I  L TG+GKT IAVMLIK +   I       G KK   FL  
Sbjct: 19  PRAYQSELLEAALRSNAIICLNTGSGKTFIAVMLIKKLQHEILPKPLDQGGKK-TFFLVN 77

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           TV L  QQ DV+R  T F+V +Y G   VD W+   W  E++   VLVMT  IL   L+ 
Sbjct: 78  TVPLARQQSDVLRKETPFKVGDYVG-DDVDLWNKTKWVYELDSQQVLVMTADILAQILQH 136

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAM 220
            ++ +  +  ++ DECHHA GNH Y +IM+++ Y +  +KP++FGMTAS  V  G     
Sbjct: 137 GYIKVSQINLLIFDECHHAVGNHTYVQIMRDYVYKEQKSKPRIFGMTAS--VFHGKCRIG 194

Query: 221 DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE 255
             E +I  LE+ L S+V T   + ++      A+E
Sbjct: 195 QIENKIRSLEAILLSRVVTTSYRQDLANHSTKAEE 229



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 159/349 (45%), Gaps = 43/349 (12%)

Query: 1009 PELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLRE------EINCHSRNFHIPSSL- 1061
            PEL  R  +  SV K +  +PS + R+E+L+LA +L++       IN  S + +   +L 
Sbjct: 567  PELCKRYFLSASVWKVITCIPSFLWRMETLLLAHELKDVLFGSIPINGISISKNQTFTLK 626

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            +LEALT     +  S+ERLE LGDS LK+ ++ +LF+++PK HEGQL+   +  V N  L
Sbjct: 627  LLEALTLAEAEDDISLERLEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRNDNL 686

Query: 1122 HKLGTDRKLQGYIRDSAFDPRR---WVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTK 1178
             KLG    +  YI    F+  +   W+ PG                   L  K    D K
Sbjct: 687  LKLGKSTPICEYIIGKPFNLLKNEGWIPPGY----------------KLLSSKVKNLDEK 730

Query: 1179 VVVGKPCD--MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVS--- 1233
            V      D  + H+   SK+IAD  +A++ A  +      A Y + WL  D    ++   
Sbjct: 731  VTSDLDGDKAVTHQKFSSKSIADVMKAILAAILLEFDERHAKYFISWLDKDIKFTINASA 790

Query: 1234 ---LVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLY 1290
               L DD    ++  + +   N ++ +E  IGY F  K  +  A+TH+S    Y + ++ 
Sbjct: 791  ASLLPDDDNISSNEINKIYETNNLERLEKVIGYSFQNKLFMIRALTHSS----YHHHDIA 846

Query: 1291 KHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVG 1339
                     L   I +Y+ +        +S P  K P  L D  E+IV 
Sbjct: 847  IESNQKLEFLGDTILQYIIA----RHFFNSHPDAK-PAKLHDFQEAIVN 890



 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 123/266 (46%), Gaps = 48/266 (18%)

Query: 417 CIIFVERIIAAKVVERFVKKVP--------FLTHLTVAYLTGSTTSVDA--LTPKVQKEV 466
            IIF E+   A  +   + KV           +   V + T  ++S+ A  ++   Q   
Sbjct: 253 AIIFTEKRCVAYALSSILDKVAEHDNAFSCIKSDFVVGHGTRVSSSLVATNMSHNQQTRA 312

Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
           +  FR   VN+L AT+V+EEG+ VP C+ V+RFD  KT  SY+Q++GRAR  ++ +I+++
Sbjct: 313 INKFRRQDVNILVATNVLEEGIDVPKCNLVVRFDEIKTFGSYLQAKGRARAQHAHYIILV 372

Query: 527 ERGNLKQ-RNKLFDIIRSERSVTDTALSR--DPEACFLKACTYVKTKSYIVESTGASVTT 583
           E+  +   R++       ER + D    R    E  +L   +      Y VESTGA VT 
Sbjct: 373 EKDKIADARDQFSTWSYLERYLQDQCQCRAVGTEEDYLADDSLNLVPPYEVESTGAKVTM 432

Query: 584 DSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPF-QTIVGPTSRNKN 642
            ++                                   + LPS++P   +I GP +  + 
Sbjct: 433 SNTT----------------------------------IQLPSSSPLPDSITGPLAITEK 458

Query: 643 LSKQLVCLEACEKLHQVGALNDHLLP 668
            +K    L  C++LH++G L+D+L+P
Sbjct: 459 RAKASTALLVCQELHEIGQLDDNLVP 484



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIE 1379
            +K PK + D++E+++GA+ IDT  ++ EV +   P+L P ++    ++P  P+R+L E
Sbjct: 952  VKIPKPVSDVVEALIGAIYIDTGESIAEVTKALMPLLQPRISLVLRDIPISPIRQLYE 1009


>gi|350631467|gb|EHA19838.1| hypothetical protein ASPNIDRAFT_119009 [Aspergillus niger ATCC
           1015]
          Length = 1232

 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 151/587 (25%), Positives = 255/587 (43%), Gaps = 68/587 (11%)

Query: 130 VDEW-DSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTK 188
           V+ W D   W   ++   + V T Q+L DAL   F+ L  +  ++ DE HH   +H   K
Sbjct: 28  VEHWKDKAIWDNALSGIKIAVSTYQVLYDALSHGFVKLSQMSLLIFDEAHHCKKDHVANK 87

Query: 189 IMKEFYHKS-----DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDK 243
           IM+  YHK       N PK+ G+TASP++   +SS    E  +  +  T       +   
Sbjct: 88  IMQVHYHKQHQSGVQNLPKILGLTASPIL-SDLSSLEIVESNLGSICKTPRQYYAQLLQF 146

Query: 244 TEMEVFVPSAKE------SCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYK 297
           T   + +P          S +     K CG  L  + EV       S SK++  QL   +
Sbjct: 147 TNRPLILPRLPTYTIPNCSVKAPILEKLCGI-LSSEDEV------PSSSKMKSKQLKHIR 199

Query: 298 DMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357
                 +++ +              ELG+  A E ++   + ++  +E   +  + +   
Sbjct: 200 RFMQTSESINQ--------------ELGIWAATEYMR---KSIMHFKESMRMGAEKTNIS 242

Query: 358 KY---FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQ 414
            Y   F  E+L  +G               D S A+    IS     LL   LS      
Sbjct: 243 NYGKDFAMEILTRLGKLQ------------DCSPAIQPEEISPMCQCLLDE-LSKAYREG 289

Query: 415 VLCIIFVERIIAAKVVERFVKKVPFLTHL-TVAYLTGSTTSVDALTP-------KVQKEV 466
              ++FV +      ++  ++  P  +HL T     G +T+  + T        + Q E 
Sbjct: 290 FCGLVFVTQRATVLALKWLIENHPLTSHLFTCGTFIGMSTTQYSKTELGNLHDIRNQTET 349

Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
           LE FR G +NL+  TD +EEG+ VP C+ V+ F+   ++ S+IQ RGRAR+ NSQFI+++
Sbjct: 350 LEKFRQGSLNLIITTDALEEGIDVPACNTVLNFNCQLSLKSFIQRRGRARRENSQFIIIM 409

Query: 527 ERGNLKQRNKLFDIIRSER-SVTDTALSRDPEACFLKACTYVKTK-SYIVESTGASVTTD 584
           E  +  +  K  ++   E       A  R   A  L    Y +   S  ++ TGA +   
Sbjct: 410 EDESGPRYLKRLEMEEIELVQKLQNAERRQIPANELDFDKYERISLSLDIDRTGAQLIMR 469

Query: 585 SSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNA-PFQTIVGPTSRNKN 642
            +V  ++ +C  LP+  Y + KP+F Y+      +   + LPSN  P       +     
Sbjct: 470 EAVGYLYNFCSKLPAQLYVSNKPLFTYERNNYGRFRAVVKLPSNLDPSLQSFSSSRSWSR 529

Query: 643 L--SKQLVCLEACEKLHQVGALNDHLLPS-VEEPSENNLISKKNESL 686
           L  +++   L+A + L+Q G +ND+L+P+ V +  E ++I + + S+
Sbjct: 530 LKYAREDAALQAYKALYQAGLVNDYLVPTQVSDHLEGDIIFRSHYSI 576



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 104/253 (41%), Gaps = 31/253 (12%)

Query: 1029 PSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVL 1088
            PS+   +E  M+A  LR+E++  S        L+  A+         +   L  +GD+ +
Sbjct: 812  PSISHEVEVYMIAQILRQELSLRSVTPWQRIDLLAIAIRPTSIEHRATFRSLAFIGDAFM 871

Query: 1089 KYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPG 1148
            KY  +  LFL +   HEG LS+ +   + ++ L        L  ++     + +RWV P 
Sbjct: 872  KYLFAMQLFLHHHLWHEGLLSSLKQRNLSDAGLAHAIHQSGLGKFLISKHLNGKRWVPPL 931

Query: 1149 QLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAY 1208
               + P   E                               R +G+ T+AD  +A++GA 
Sbjct: 932  VSGIEPASNEA----------------------------RQRSIGAATLADMTKAVVGAA 963

Query: 1209 YVGGGL--IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFT 1266
            +  GGL   AA   + +  + +    SL D   ++    + V     I D+E  +GY FT
Sbjct: 964  FTDGGLNQAAACASVMFPKLKSWNASSLHDGTYSKTRPENAVAS-TAIVDMEELLGYTFT 1022

Query: 1267 VKFLLQEAITHAS 1279
             K L  E++TH S
Sbjct: 1023 DKSLAVESMTHPS 1035


>gi|168021275|ref|XP_001763167.1| dsRNA-specific nuclease dicer and related ribonuclease
           [Physcomitrella patens subsp. patens]
 gi|162685650|gb|EDQ72044.1| dsRNA-specific nuclease dicer and related ribonuclease
           [Physcomitrella patens subsp. patens]
          Length = 961

 Score =  144 bits (362), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/226 (38%), Positives = 124/226 (54%), Gaps = 23/226 (10%)

Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSE 544
           +EG+ +  C+ VIRFDL KTV +YIQSRGRAR+  S +ILMLERGNL+      +   SE
Sbjct: 24  KEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMLERGNLQHEAFFRNAKNSE 83

Query: 545 RSVTDTALSRDP-----EACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPS 599
            ++   A+ R       E   L +    + + Y V +TGA V+ +S+V LIH YC  LPS
Sbjct: 84  ETLRKEAIERTDLGEKRENAILASIDIGEGEIYQVPATGAVVSMNSAVGLIHFYCSQLPS 143

Query: 600 DKYYTPKPIFKYKSAEEA-----YECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACE 654
           D+Y   +P F     E+      Y C L LP NAPF+ + GP         +   LE  +
Sbjct: 144 DRYSLLRPEFIMNKIEDQRGAIRYSCRLQLPCNAPFEAVEGP---------EFCVLEGLQ 194

Query: 655 KLHQVGALNDHLLPSVEEPSENNLI--SKKNESLPGAGTTKRKELH 698
           K+H++GA  D LL +     E   +  S++ ESLP  GT++ +E +
Sbjct: 195 KMHEMGAFTDMLLSNKGSREEAAKLEGSEEGESLP--GTSRHREYY 238



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 53/84 (63%)

Query: 1065 ALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL 1124
            ALT   C E+FS ER ELL D+ L++ VS  LFL +P KHEGQL+  R   V NS L++ 
Sbjct: 512  ALTAASCQETFSYERAELLSDAYLEWVVSHRLFLKFPSKHEGQLTRMRQKIVSNSVLYQH 571

Query: 1125 GTDRKLQGYIRDSAFDPRRWVAPG 1148
              ++ LQ YI+   F P RW APG
Sbjct: 572  ALEKGLQSYIQADRFAPSRWAAPG 595


>gi|320037410|gb|EFW19347.1| hypothetical protein CPSG_03731 [Coccidioides posadasii str.
           Silveira]
          Length = 1465

 Score =  143 bits (360), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 131/221 (59%), Gaps = 12/221 (5%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA--IKSNGFKKLIIFLAPTV 103
           PR YQL++FE AK+ N IAVL+TG+GKT+IAV+L+K I +   I  +  K   +    +V
Sbjct: 99  PREYQLELFEKAKKDNIIAVLDTGSGKTLIAVLLLKHIIEQELIDRSAEKPHRV---DSV 155

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            LV QQ  V++ + +  V+++ GA   D W+ + W++ + KN V+V T ++L   L  AF
Sbjct: 156 TLVFQQAAVLQNNINQRVDKFCGAMETDLWNGETWERHLAKNMVIVCTAEVLYQCLLHAF 215

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN--KPKVFGMTASPVVRKGVSSAMD 221
           + ++ +  ++ DE H+A  +HPY +I+K+FY K  N  +PK+FGMTASP     V + +D
Sbjct: 216 VKMENINLLIFDEAHNAKKDHPYARIVKDFYLKDGNAKRPKIFGMTASP-----VDAKVD 270

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ 262
                  LE+ L+SQ+ T  + + +   V    E    YD+
Sbjct: 271 VVKAARNLETLLNSQIATASNLSLLRQSVARPNEEVWSYDR 311



 Score =  141 bits (355), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 146/280 (52%), Gaps = 15/280 (5%)

Query: 400 HELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA-L 458
           HELL+ F    + T   CI+F E+   A+++     K+    HL    L G  +     +
Sbjct: 427 HELLKYF---ERHTDTKCIVFTEQRHTARILCDLFSKIG-TKHLRPGVLIGVRSDASGGM 482

Query: 459 TPKVQKEVLE--SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516
               +++VL   SFR G+VN LFAT V EEG+ +P+C+ ++RFDL  T++ YIQSRGRAR
Sbjct: 483 NISFRQQVLAVVSFRKGEVNCLFATSVAEEGLDIPDCNLIVRFDLASTLTQYIQSRGRAR 542

Query: 517 QHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTY-------VKT 569
             NS F  ++ER N   R  +  +  SE  +    +S  P+   L +             
Sbjct: 543 HMNSTFAHLVERDNFVHRESVNHLQSSEEIMKRFCISL-PKDRILNSNDVDALYEGDRNR 601

Query: 570 KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAP 629
           KSY V++TGA +T +SS+ ++  +   L  +K  +    + ++  + A+ CE+ LP  +P
Sbjct: 602 KSYTVQTTGAKLTYNSSLVVLAHFANSLQYEKETSTVVSYYHRFTKNAFVCEVVLPEKSP 661

Query: 630 FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPS 669
            + IVG  +  K ++KQ    E C  L + G L+DH + +
Sbjct: 662 IRGIVGKPASKKLIAKQSAAFETCLLLRKHGLLDDHFVST 701



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 127/358 (35%), Gaps = 105/358 (29%)

Query: 1078 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1137
            ERLE LGD  LK A S  LF   P   E     +R   VCN  L K     KL  +IR  
Sbjct: 1026 ERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLVCNQNLFKTAVRFKLYEFIRSQ 1085

Query: 1138 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTI 1197
            +F  R W   G L+L               L GK   Q       K        +  KTI
Sbjct: 1086 SFSRRGWYPEG-LTL---------------LQGK--GQSKGATENKHA------LADKTI 1121

Query: 1198 ADCAEALIGA----------YYVGGGLIAALY------MMKWLGIDADLEVSLVDDCITR 1241
            AD  EALIGA          + +    + AL       ++ W        +      +  
Sbjct: 1122 ADVCEALIGACCLLASKNHRFDIAVKAVTALVSSDDHNVLNWEQYSRLYSLPKYQTAVVD 1181

Query: 1242 ASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY----CYQN--------- 1288
            A+       ++    ++ K+GY F    LL+ A TH S    +    CYQ          
Sbjct: 1182 AA------ELDLAAQVKKKLGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALL 1235

Query: 1289 -----------------------------------------LYKHLQHCSTLLLSQITEY 1307
                                                     L+ HL H ST L SQIT Y
Sbjct: 1236 DMACVEHIYHKHPDKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNY 1295

Query: 1308 VKSFP----KPGETTDSGP-SMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
            V+       + G++ D+   +   PK L D++E+ +GA+ ID+  + + V   F+  L
Sbjct: 1296 VEEIEAAELESGDSPDAWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFL 1353


>gi|339239929|ref|XP_003375890.1| putative RNase3 domain protein [Trichinella spiralis]
 gi|316975421|gb|EFV58865.1| putative RNase3 domain protein [Trichinella spiralis]
          Length = 1903

 Score =  143 bits (360), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 166/721 (23%), Positives = 317/721 (43%), Gaps = 88/721 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           F PR +  ++ ++ +R N IA L +   +  ++VMLI++ +  ++   +  ++  ++L  
Sbjct: 12  FTPRDHLTRLVDIGRRCNLIAPLGSAVDRLYVSVMLIREFSSMLRKPCSKNRRWCVYLVD 71

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
               +    D IR++T+  V E +    ++    Q    ++  N++ V T    +  L  
Sbjct: 72  RATSIKSVADRIRIYTNLNVGEIFCDIHLESEAKQYCAAQMEGNEIFVTTGTHFMKLLDL 131

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAM 220
           +F+  +  C ++ ++CH A  +HPY  I+KEF + + + +P++ G+T S ++   V    
Sbjct: 132 SFIPRNCYCLVIFEDCHLAIRSHPYRNIVKEFLNIEKEYRPRLLGLTMS-LINDEVKG-- 188

Query: 221 DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280
           DC      L+  +D+    +  K  + +  P+ K   R    +K            SW  
Sbjct: 189 DC------LQYGIDTMQEVLCSKVVLTMLSPAKKFLKR---DTKVVLISYPSTSLFSWDM 239

Query: 281 FDASLSKLQGSQLNCYKDM---DDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL 337
           FD  +  L  S     +++   +D      + + +   K+ +  DE+G  CA+   K+C 
Sbjct: 240 FDNYILHLLVSPTFILENITLPNDDDMICMQHVIESLNKVKWIHDEMGPWCAW---KVC- 295

Query: 338 EKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDL-GYIS 396
                 ++E ++ R   ++       ++ +  + L    K+F +   +      L  YI+
Sbjct: 296 -----QKQEMQLNRMKRIKPGTMQYLLIEMGQTYLRCLRKVFENHVKNLKNFSSLCAYIT 350

Query: 397 TKLHELLQLFLSFGKSTQVL-----------CIIFVERIIAAKVVERFVKKVPFLT---- 441
             ++  ++L LS  K   V            CI+F +    A V +  +K +  L     
Sbjct: 351 GHVYSFIEL-LSHNKMRSVFADDENFPENFCCIVFFKHRYIAYVYKILLKTLQNLWPDMF 409

Query: 442 -HLTVAYLTG-----STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSY 495
            +L V +L G     +  S +AL  + Q EVL+ FR  ++NLL  T V+ +G+ +   + 
Sbjct: 410 GYLKVDFLVGYDSETADASKEALHER-QHEVLKKFRTKELNLLLTTRVLAKGIELRGANC 468

Query: 496 VIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG----NLKQRNKLFDIIRSERSVTDTA 551
           VI +D P+++ S+I  + RA + NS + ++L       +    N   DI +  R+ +   
Sbjct: 469 VIHYDEPESLRSFIYVKNRANKPNSHYFILLSECTSALSASVINTFVDIDKIIRNYSLLD 528

Query: 552 LSRD----PEACFLKACTYVKTKSYIV----------ESTGASVTTDSSVNLIHRYCEML 597
              D    P+        Y   KS  V          ++     T  +S+ +++ YC+ L
Sbjct: 529 YEDDNLELPDDLDDTFKPYYPKKSEEVGDDDEEADKLKNNNVCATLANSIRIVNHYCQRL 588

Query: 598 PSD---KYYTPKPIFKYKSAEEA----YECELTLPSNAPFQTIVGPTSRNKNLSKQLVCL 650
           P D   +      + K  S E A    Y   L LP N+P     GPT  +  L+++ V L
Sbjct: 589 PCDIFSRLVADCHVEKVMSGECAPSPKYRATLKLPINSP-----GPTVDSVMLARRSVAL 643

Query: 651 EACEKLHQVGALNDHLLPSVEEPSENNLIS-KKNESLPGA-----GTTKRKELHGTTPIR 704
           E  + LH+ G L D L+P  +E   + LI+ + +E  P       G++KR++ +    +R
Sbjct: 644 ETVKLLHRRGELYDSLMPIGKEMVASLLIADEDDEEWPVTGKACPGSSKRRQYYNKA-VR 702

Query: 705 A 705
           A
Sbjct: 703 A 703



 Score =  124 bits (310), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 134/501 (26%), Positives = 203/501 (40%), Gaps = 137/501 (27%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            +L A+T     E+F++E LE+LGDS LKY  + + +  Y K HEG+LS  RS  + N  L
Sbjct: 1403 VLHAITASAVAETFNLEGLEILGDSFLKYVTTVYCYKAYSKMHEGKLSLLRSRMISNYNL 1462

Query: 1122 HKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQ----D 1176
            +KLG  + +  Y+    FDP   W+ P       VP  C V    +  + K   Q    D
Sbjct: 1463 YKLGKRKNIPQYMIAIKFDPSDTWLPPCY-----VPLNCEVQDTAIEEEDKLMEQRLMND 1517

Query: 1177 TKVV--------VGKPCDMGH---RW------------------MGSKTIADCAEALIGA 1207
              VV         G+    G    +W                  +  K +ADC EALIGA
Sbjct: 1518 ESVVEQQRNVETTGRQATTGSKSTKWVPEDLSQLVPFNLLAQQGISDKGVADCVEALIGA 1577

Query: 1208 YYVGGGLIAALYMMKWLGIDADLEVSL--VDDCI-------------------------- 1239
            Y +  G    L  + WLG+  + EVSL     CI                          
Sbjct: 1578 YLLFCGTRRTLDFLHWLGLKVEDEVSLRGFSRCIVSPTPISFANFDLYGVTKSALINNSA 1637

Query: 1240 -TRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY-----CYQNL---- 1289
             + A L++   R + +   E  IGY F  + LL +A+TH++   FY     CYQ L    
Sbjct: 1638 DSEACLKTLWNRFS-LSQFEDIIGYRFKDRSLLVQALTHSTY--FYNEVTDCYQRLEFLG 1694

Query: 1290 --------YKHLQHCSTL---------------------LLSQITEYVKSFPKPGETTDS 1320
                     +HL     +                     L+  I ++VK+     E  + 
Sbjct: 1695 DAVLDHLITRHLYEDKRMHSPGMLTDLRSALYFMYLCPGLMMMIEKFVKTLNIIKENANF 1754

Query: 1321 GPSMK---------------------APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPI 1359
               ++                      PKALGD+ ES+ GA+ +D+  +L  VW I+  +
Sbjct: 1755 DREVRVHLLNLYLLEGEEENAEEQVEVPKALGDIFESVAGAIYLDSGCSLHTVWCIYYNM 1814

Query: 1360 LSPIVTPDKLELP--PLRELIEL-CDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEG 1416
            L   +    L  P  P+R+L+EL  D + +   E   ++G+ V   + ++ K    VG G
Sbjct: 1815 LREEIEKCCLNPPISPIRDLLELEPDRVKFSRVERNAVEGK-VKVAVTVEGKG-RFVGAG 1872

Query: 1417 QERSRKAAKGKAASQLLKKLE 1437
              RS + AK  AA + L+ L+
Sbjct: 1873 --RSYRIAKSTAAKRALRYLK 1891



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 12/152 (7%)

Query: 903  DAKNLKDMVVLAIHTGRIYS-IVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIH 961
            +A   KD VV+  +  +  S    ++N     +P     DD+ ++F +YF +KYG+ + H
Sbjct: 885  NAFRYKDAVVMPWYRSQEMSHCYFVLNVDEGLTPLTKFPDDEYESFKSYFWQKYGLEIYH 944

Query: 962  PGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHV-----HMPPELLVRVD 1016
              QPLL +  + +  N L          +  +  +      M V      + PEL+    
Sbjct: 945  DDQPLLNVDYTASRLNRLF------PRRQARRESLEADYDTMSVVAQKQKLVPELVDIHP 998

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
            +P S  + L  LPS++ RL SL+LA++LR ++
Sbjct: 999  IPASTWRCLQYLPSILYRLSSLLLANELRLQV 1030


>gi|241061224|ref|XP_002408099.1| dicer-1, putative [Ixodes scapularis]
 gi|215492368|gb|EEC02009.1| dicer-1, putative [Ixodes scapularis]
          Length = 1348

 Score =  143 bits (360), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 193/404 (47%), Gaps = 41/404 (10%)

Query: 325 GLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF 384
           GL  A  +  +   K+L+  EE  +  + S QC  +L++    +            D G 
Sbjct: 344 GLEMAMRSRVLTARKLLEKTEERRVAEEVS-QCLDWLQKAQSRLSKGC--------DPGV 394

Query: 385 DYSKAVDLGYISTKLHELLQLFLSFGKS----TQVLC-IIFVERIIAAKVVERFVKKV-- 437
           ++ +   L   + KL +LL++   F  +       LC I+FV+  + A+V+  ++ +V  
Sbjct: 395 NFVEHRLLALATPKLKKLLEVLRVFRPTGPEEDSSLCGIVFVKERVVARVLCAWLGRVAE 454

Query: 438 ---PFL---THLTVAY--LTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMH 489
              P+     H  V +  + G +T    ++ K Q +VLE FR  + NLL AT V+EEGM 
Sbjct: 455 EVAPYAFVRPHFVVGHGGVAGQSTKESGMSFKQQCKVLEQFRRQECNLLVATSVVEEGMD 514

Query: 490 VPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER-------GNLKQRNKLFDIIR 542
           VP CS V+RFD P    SY+QS+GRAR   S +++M+ R        NL+  + +  ++ 
Sbjct: 515 VPKCSLVVRFDFPPDYRSYVQSKGRARARRSLYLMMVSRDDCQLSCSNLQAYHVVESLLM 574

Query: 543 SERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGAS-VTTDSSVNLIHRYCEMLPSDK 601
           ++       L  D E     A   +      V+  GA+ +T  S++ L++RYC  LPSD 
Sbjct: 575 NKCRERKAPL--DSEVVLSFAVDEMLPPYMPVKRDGAARITMTSAIGLVNRYCVKLPSDI 632

Query: 602 YYTPKPIFKY----KSAEEAYECELTLPSNAPF-QTIVGPTSRNKNLSKQLVCLEACEKL 656
           +   +P +      +  +E Y C + LP  +P  + I G     K  +K    LE C++L
Sbjct: 633 FTRLQPDYTILPVNREDKEYYVCTVYLPMTSPLKEPIQGQPMETKRYAKMAAALETCKRL 692

Query: 657 HQVGALNDHLLP--SVEEPSENNLISKKNESLPGAGTTKRKELH 698
           HQ+G L+D+LLP        E      +   +P  GT KR+ ++
Sbjct: 693 HQMGELDDNLLPVKRTLALLEEPEEEAEQPGVPKPGTKKRRRVY 736



 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 116/253 (45%), Gaps = 59/253 (23%)

Query: 49  YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPTVHL 105
           +++++FE AK  NTI  L TG GKT IAVMLIK++ + I+     G K+   FLAPTV L
Sbjct: 115 FEVELFEGAKEANTIVCLGTGTGKTFIAVMLIKEMEKDIRVPFEEGGKR-TFFLAPTVPL 173

Query: 106 VHQQYDVIRVHT---------DFEVEE--------------------------------- 123
           V QQ   I+ HT         D  V+                                  
Sbjct: 174 VAQQQKAIQAHTSLHVGGYIGDMNVDNWDAARWHKEFVNSQVKLLFLPLVAQQQKAIQAH 233

Query: 124 -------YYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDE 176
                  Y G   VD WD+  W KE   + VLVMTP+I    L  AFL L  V  +++DE
Sbjct: 234 TSLRVGGYIGDMNVDNWDAARWHKEFVNSQVLVMTPEIFKIILHHAFLPLSRVNLLILDE 293

Query: 177 CHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS 235
           CH A   H Y +IM+     +    P+V G+TAS +  K   + +  E ++  LE  + S
Sbjct: 294 CHRAVKQHTYREIMRCMDVVEQGLCPRVLGLTASVINSKATEAQV--EHKMHGLEMAMRS 351

Query: 236 QVFTIE---DKTE 245
           +V T     +KTE
Sbjct: 352 RVLTARKLLEKTE 364



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 36/161 (22%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI---DADLEVSLVDDCIT--------RAS 1243
            K++AD  EALIGAY +  G + AL +MKW+G+     DLE       +         + +
Sbjct: 984  KSVADSVEALIGAYLLVCGPVGALKVMKWMGVRLTQCDLEGGAEGSGVRGFWGFPPPQTA 1043

Query: 1244 LRSYVPRINE------------IKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQN--- 1288
            L  +VP   E            + D+E  +GY F  +  L +A+THAS      Y+N   
Sbjct: 1044 LLRHVPHPEEDLAALMELMADTVADVERALGYTFVDRSFLLQAVTHASY-----YRNRLT 1098

Query: 1289 -LYKHLQHCSTLLLSQ-ITEYVKSFPK---PGETTDSGPSM 1324
              Y+ L+     ++   +T Y+   P+   PG+ TD   S+
Sbjct: 1099 DCYQRLEFLGDAVIDYLVTRYLYELPRKFNPGQLTDLRSSL 1139



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 150 MTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTA 208
           MTP+I    L  AFL L  V  +++DECH A   H Y +IM+     +    P+V G+TA
Sbjct: 1   MTPEIFKIILHHAFLPLSRVNLLILDECHRAVKQHTYREIMRCMDVVEQGLCPRVLGLTA 60

Query: 209 SPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEM 246
           S +  K   + +  E ++  LE  + S+V T+ D+  M
Sbjct: 61  SVINSKATEAQV--EHKMHGLEMAMRSRVLTVSDQASM 96



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT--PDKLELPPLRELIE 1379
            PKALGDL ES++GAV +D  ++LD VWRI   +    +      + +PP++EL E
Sbjct: 1238 PKALGDLFESLMGAVFLDCGMSLDRVWRIIYRMFGQEIESFSQNVPVPPVKELTE 1292


>gi|301106324|ref|XP_002902245.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
 gi|262098865|gb|EEY56917.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
          Length = 2680

 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 143/532 (26%), Positives = 230/532 (43%), Gaps = 62/532 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ+++   A   NTI  L TG GKT++A+ ++ ++    K     KL++F  PT  LV
Sbjct: 199 RRYQVELTISALLENTIVYLPTGCGKTLVAIKVLDEM----KHLNPNKLVVFFVPTGPLV 254

Query: 107 HQQYDVIRVHTDFEVEEY---YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            QQ   IR  +DF V+E    +G  G    D      ++   D L +TPQ  L+ L    
Sbjct: 255 SQQAAYIRRESDFRVKEMSGQHGRTGAATSDPITVDGDV---DALAVTPQYFLNLLFNDR 311

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-DNKPKVFGMTASPV---VRKGVSSA 219
             +     +V DE HHATGNHPY +++K+        +P +  +TASP    VR+  S  
Sbjct: 312 TKITDYSVMVFDEAHHATGNHPYCELLKKLATIDLRTRPHILALTASPFGEGVRE-TSGQ 370

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEV-FVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
                      + +++     ED   +E  F+P  KE+     Q       L+  ++   
Sbjct: 371 TALNNLARAFNAVVNAPTIAAED---LEASFIP--KEAQWVTVQESEHERKLREGIKRYI 425

Query: 279 SKFDASLSKLQGSQLNCYK---DMDDKHKTLRKQLSDYHAKILYCLDELGLIC---AYEA 332
             F   + +L   Q+  ++   D DD       +LS + AK+    ++   +      + 
Sbjct: 426 ESFYTLIRRLMNGQVIPFEGNYDTDD------MELSQFLAKLRILREQAEKMARGPKADT 479

Query: 333 VKICLEKVLKAQEECEIYRQSSLQ-CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKA-- 389
               +EK  ++  + E+  Q  L+    F    +H  G+      +IF D     SK   
Sbjct: 480 DTTGVEKSKRSLSDLELIFQHLLKVASSFYNLSIHGAGTVAEALRRIFSDLEAAESKKGK 539

Query: 390 -----VDLGY--------------------ISTKLHELLQLFLSFGKSTQVLCIIFVERI 424
                V+  Y                    IS ++H + +             I+FV R 
Sbjct: 540 RAFVLVEPAYRAIMIPALVNFPLETFTGTDISNRVHLVAECIRRANFDHNSRAIVFVRRR 599

Query: 425 IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVI 484
             A ++ + ++ +  L  L      G  +       + Q+  L+ FR G++ LL AT+V+
Sbjct: 600 KTAILLAKAMEALDVLRELNPTRFVGHNSYEGMSWEEEQRPTLDRFRQGRIRLLVATNVL 659

Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           EEG+ VP CS VI+FD    V+S IQSRGRAR  +S FI+       K+RN+
Sbjct: 660 EEGLDVPECSLVIQFDGVIGVTSLIQSRGRARHRDSSFIIFCSAVG-KERNQ 710


>gi|403171941|ref|XP_003331118.2| hypothetical protein PGTG_13081 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|375169641|gb|EFP86699.2| hypothetical protein PGTG_13081 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1431

 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 115/208 (55%), Gaps = 10/208 (4%)

Query: 45  IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLI-IFLAPTV 103
           IPR+YQ ++ E AK+RN I   +TG GKT++AV LI   A   K+N     I  FL PT 
Sbjct: 20  IPRLYQTELLEEAKKRNIIIRADTGTGKTIVAVNLIAWTAVKTKANNKNHQIQAFLVPTR 79

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            L HQQ + I+ H    ++ Y G    + W+ + W  E+N+ DVLV T QI  D + K +
Sbjct: 80  PLAHQQAEYIQKHCTLRIKAYTGDLQPELWNIRKWHSELNEVDVLVSTAQIFYDLISKGY 139

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVR-KGVS 217
             L+ V  ++ DE HH   NH Y +IM+  YH+     +   PK+ G+TASP+   K + 
Sbjct: 140 WKLEDVSLLIFDEAHHCRKNHVYNQIMRSHYHRLAKDSTVRLPKILGLTASPIWNFKDLE 199

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTE 245
            A   E  I  L+S L +Q++ ++  TE
Sbjct: 200 KA---ESDIKNLQSALAAQIYEVKKHTE 224



 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 143/296 (48%), Gaps = 22/296 (7%)

Query: 395 ISTKLHELLQLFLSFGKS---TQVLCIIFVERIIAAKVVERFVKK-VPFLTHLTVAYLTG 450
           +S+K+  L ++ +++ +       LCI+FVER   A+++   +++ V     L  A LTG
Sbjct: 340 LSSKVIALYKILVNYKEKDDHNNFLCIVFVERRQHAQLLPILLERNVQLKDFLRPAALTG 399

Query: 451 STTSVD------ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
             +  +       +  K Q   +  FR G+ NL  AT V EEG+   +C  VIRFDL  T
Sbjct: 400 HGSGNENDLIGIKMDSKTQNRTVAKFRTGEHNLTIATSVAEEGLDFRSCRVVIRFDLITT 459

Query: 505 VSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC 564
              YIQSRGRAR   S +I+ML  G     NK       E  +   AL   P+   ++  
Sbjct: 460 WKGYIQSRGRARARESDYIVMLPTGTA---NKYLAFSGKEEQLK-AALYDRPQDELIEDG 515

Query: 565 TYVKTKSYI---VESTGASVTTDSSVNLIHRYCEMLPSDKYY-TPKPIFKYKSAEEAYEC 620
               T   I    +   + +T  ++ +L++  C+++P D++     P ++     E ++C
Sbjct: 516 EEESTPQLICQLADGKESILTYSAATSLLNDVCQLIPPDEFLPVVAPEYEMMELGERFKC 575

Query: 621 ELTLPSNAPF----QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE 672
            +TLP  A      +T  G     KN +K+    EAC+ L ++G LN+H LP  E+
Sbjct: 576 RVTLPPMAALPPSRRTFTGLEMGTKNGAKRSAAFEACKVLRELGVLNEHFLPQRED 631



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 126/291 (43%), Gaps = 45/291 (15%)

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLI---L 1063
            +P +L     +P ++ K    LPS+ + L   + A+ L   ++        P +L+   +
Sbjct: 893  LPLKLCQGTHIPRTIWKVFSYLPSLTRLLHDSIQATALFMRLD-------FPMTLLPRGI 945

Query: 1064 EALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHK 1123
            +ALT  G    +  + LE +GD+ LK A S H++L++ +K EG +S  RS +V N  L +
Sbjct: 946  QALTPPGVGVPWDYQTLETVGDAFLKLATSVHVYLSHLRKGEGDMSHVRSKSVDNDYLRR 1005

Query: 1124 LGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGK 1183
                  L   I    F   R+        R    E   D  E+P +G F           
Sbjct: 1006 KAIQANLPSSILGQRFRTDRF--------RDAQTE---DGKELP-NGNF----------- 1042

Query: 1184 PCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWL-----GIDADLEVSLVDDC 1238
                  R +  + ++D  EAL+GA ++ GG+   L +   L     G     E +L    
Sbjct: 1043 -----SRNVPRRVLSDVVEALLGAGFLTGGIELGLKIGTALDLCFGGTTPWNERTLNIAF 1097

Query: 1239 ITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY--CYQ 1287
               A  +   P + + + +E KIGY F  K LL +A+TH S   F   CY+
Sbjct: 1098 EGTAHDKLASPILLKCQALEEKIGYVFKEKLLLVQALTHRSANSFMTNCYE 1148


>gi|66802840|ref|XP_635263.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
 gi|60463423|gb|EAL61608.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
          Length = 2403

 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 154/534 (28%), Positives = 253/534 (47%), Gaps = 52/534 (9%)

Query: 42  INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDI----AQAIKSNGFKKLII 97
           +  IPR YQ++ +  + + NT+ VL TG GKT++++M + ++     Q       K++ +
Sbjct: 269 VEIIPRDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIAL 328

Query: 98  FLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
           FL   V LV QQ   I   T+ +V + YG        +    KE    DVLV T   L++
Sbjct: 329 FLVDRVPLVTQQAGAIEAITNLKVCKLYGEINDSRTRAFVRSKEY---DVLVSTVGSLVN 385

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKG 215
            L    L++    FI  DE HHATG H + K++ ++  K+D   +P++ G+TAS +V  G
Sbjct: 386 LLEVRHLNILDFYFITFDEVHHATGEHDFNKVV-DYIRKTDLNFRPRILGLTAS-LVSIG 443

Query: 216 VSSAMDCEGQISELESTLDSQVFT----IEDKTEMEV------FVPSAKESCRFYDQSKF 265
            S+    +  I ++E  + S+VF     + + T+ E+      F  S +ES       +F
Sbjct: 444 NSTIDIVQRSIKDMEERMLSRVFKPTSLLTNSTQSELQPELVSFKTSGQESLIETSICEF 503

Query: 266 CGSDLKGKLEVSWSKFDASLSKLQG--SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
             S+ K +L++  +  D  L  ++G  S L   + +D   K L     +Y  K+L  L E
Sbjct: 504 LVSNSK-ELQIFLNYSDVDLDGVRGNPSFLKALERLDKYSKQLESIYIEY-TKVLIKLYE 561

Query: 324 LGLICAYEAVKICLEKV----LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
           L  + + E  K  L  +        +E E+Y +        L E+ + I       +  F
Sbjct: 562 LLSVLSTEGPKQVLTGLDLLMQSTNQENELYNK--------LLELRYYISGQYEDRESNF 613

Query: 380 LDFGFDYSKAVD-LGY-ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437
                 Y K +  L Y IS      LQ      K  ++L  +FVE    A  +   +KK 
Sbjct: 614 EKGSTRYRKLISSLEYAISDASDGELQ------KDLRIL--VFVETRSGASNLTSMLKKE 665

Query: 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
           PF  +L    L G     D +  + Q+ ++  FR GK  L+  T+V+EEG+ V +C+ VI
Sbjct: 666 PFQEYLHTKRLVGHNGD-DGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEGIDVQDCNIVI 724

Query: 498 RFDLPKTVSSYIQSRGRARQHN-SQFILMLERGNLKQRNKLFDIIRSERSVTDT 550
            +D   ++ S IQ RGRAR  N S+FI++    N  +  K+ +I+ SE  + ++
Sbjct: 725 CYDGILSLKSLIQRRGRARSKNESKFIIIY---NDDKDLKILNILSSENLLNNS 775


>gi|328772805|gb|EGF82843.1| hypothetical protein BATDEDRAFT_23044 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1492

 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/268 (35%), Positives = 146/268 (54%), Gaps = 25/268 (9%)

Query: 4   PLNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTI 63
           P N    +F E+ S    DM ++      D PS  +N +   PR YQL +FE+AK  N I
Sbjct: 19  PANHSNATFQEISSVT--DMDTT------DSPSYQSNVVE--PRSYQLWLFELAKAENII 68

Query: 64  AVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV 121
           AVL TG GKT+IA++LI+ +  +I+S     +K+ + L PT+ LV QQ   I++H+    
Sbjct: 69  AVLPTGTGKTLIALLLIEHM-HSIQSPEAANRKISVMLVPTIPLVSQQAQYIKMHSKLRT 127

Query: 122 EEYYGAKGVD--EWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH 179
              + ++GV   + D + W+  + +NDV+VMT +IL  +L + ++S+ ++  IV DECHH
Sbjct: 128 G--FSSEGVSMKKHDFKYWKCALEENDVMVMTAEILKTSLDRGYISISMLNLIVFDECHH 185

Query: 180 ATGNHPYTKIMKEFYHKSDN--KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQV 237
           A   HPY  +M+  Y       +PK+FG+TASP   KG     D E  I  L+S+L  + 
Sbjct: 186 ARNLHPYRVLMQTHYALCSEAIRPKIFGITASPAFGKG-----DNEESIKYLQSSLHCRA 240

Query: 238 FTIEDKTEMEVFVPSAKESCRFYDQSKF 265
            T      +  +V S  E   ++  S F
Sbjct: 241 VT-STYESISNYVSSPVERVMYFVNSPF 267



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 159/355 (44%), Gaps = 28/355 (7%)

Query: 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG---- 450
           +S K+  L+ + L F        I+FV++   A V+   +   P L  L    L G    
Sbjct: 410 VSPKVQCLIDILLEFRYIESFCGIVFVQQRSYASVIRMLIIAHPDLQFLKPKLLIGHGKR 469

Query: 451 --STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
             +   ++ ++   Q+ V+ +FR G  NLL AT V EEG+        IRFD  +T+ SY
Sbjct: 470 KRAVGGLNGMSSTTQQSVVTAFRCGDCNLLIATQVAEEGLD-------IRFDKTQTLISY 522

Query: 509 IQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSE---RSVTDTALSRDPEACFLKACT 565
           IQSRGRARQ+ SQFI+++ + + ++   L  I + E   +S+   +++  PEA     C 
Sbjct: 523 IQSRGRARQNCSQFIVLVNKDDQQEEQSLHAIQQKEAHLQSLLVQSVNEKPEAVSSFTCD 582

Query: 566 YVKTK--SYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELT 623
              +    Y +  TGA +   +S+  +  YC  L  +     +P++   S +  +   +T
Sbjct: 583 SDDSDKFQYNIAHTGAVLNLYNSIKFLQEYCATLSVNG-TDSQPVYT-TSIDGDFNMYVT 640

Query: 624 LPS----NAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLI 679
           +          Q I G ++     +K+L   E  + LH+   ++DH    + +      +
Sbjct: 641 IQMPHLVRKECQGIQGSSANTIKKAKRLAAFEMVKLLHKFQEVDDHFNSCLSKTKYGAFV 700

Query: 680 SKKNESLPGAGTTKRKELHGTTPIRALSGRW--GEKCGV-ILHAYKFNFACSIVT 731
           +K  E+   A      +     P  AL G W  GE   V I+H  + + A S  T
Sbjct: 701 AKSKETSKKAKLIDMCDYPLKIPT-ALQGTWKDGEHAWVHIVHLQQIDSANSDTT 754



 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 141/310 (45%), Gaps = 59/310 (19%)

Query: 1022 VKSLYL-----LPSVMQRLESLMLASQLR--EEINCHSRNF-HIPSSLI-LEALTTLGCC 1072
            VK L+L     +P V+++L   +LA+ L   +EI+  +R   H P   I +E L T+   
Sbjct: 1001 VKRLHLYQGLYMPLVIRQLWHRLLATDLYFGKEISLLNRMADHTPQFFINIETLQTVLVA 1060

Query: 1073 ES----FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDR 1128
             S    +S ERLE+LGDS LK   S HLF   P + EG L+  R  A  N  L +  T+ 
Sbjct: 1061 SSTDLPYSYERLEILGDSFLKIHQSLHLFALNPSQDEGWLTTSRMVAEQNLELCRRATEV 1120

Query: 1129 KLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMG 1188
             LQG I  + F  ++WV P +          G D+++                       
Sbjct: 1121 GLQGLILTTRFSRKQWVPPAK----------GHDSMQS---------------------- 1148

Query: 1189 HRWMGSKTIADCAEALIGAYYVGGGLIAALYMMK-WLGIDADLEVSL------VDDCITR 1241
               M  K +AD  EA+IG   + GG++ A   ++  L  D   E  L      +   +T 
Sbjct: 1149 ---MPKKILADVTEAIIGGCLIDGGIVGASEAVRSLLNRDYQSEWGLYFTQYQLHRNVTP 1205

Query: 1242 ASLRSYVPRINEIKD--IESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTL 1299
            + L  ++  I+ +    IE+ + Y F  K +L EA+TH+S     C  N Y+ L+     
Sbjct: 1206 SHLVRFIGDIDSLVTLRIEAVLNYTFQDKSILWEALTHSSSSFSICGLN-YQRLEFLGDA 1264

Query: 1300 LLS-QITEYV 1308
            +LS  IT+Y+
Sbjct: 1265 VLSFIITKYL 1274


>gi|221361577|emb|CAX18337.1| dicel-like 2 [Nicotiana benthamiana]
          Length = 224

 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 124/238 (52%), Gaps = 29/238 (12%)

Query: 1057 IPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1116
            IP++ +LEA+TT  C E F +E LE LGDS LKYA S  LF TY   HEG L+ +++  +
Sbjct: 1    IPTAKVLEAITTKKCVEKFHLESLETLGDSFLKYAASIQLFKTYENHHEGLLTVKKNSII 60

Query: 1117 CNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQD 1176
             N+ L KLG  RK+ G+IR+  FD + W+ PG                    + + +  D
Sbjct: 61   SNAALCKLGCARKIPGFIRNEPFDLKGWLIPGD-------------------NSQVYNFD 101

Query: 1177 TKVVVG--KPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSL 1234
             +V++   K    G +   SK +AD  EALIGA+   GG +AAL  MKWLGID D     
Sbjct: 102  EEVLMPSVKMYSRGRQKTKSKRVADVVEALIGAFLSSGGEVAALSFMKWLGIDIDFV--- 158

Query: 1235 VDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASV---QEFYCYQNL 1289
              D  +         ++  ++ +ES + Y+F    LL EA+TH S    +   CYQ L
Sbjct: 159  --DAPSPRHFPMNAEKLVNVRYLESLLHYKFHDPSLLVEALTHGSYMLPEIPRCYQRL 214


>gi|240247227|emb|CAX68236.1| dicer-1 [Blattella germanica]
          Length = 2271

 Score =  140 bits (353), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/202 (38%), Positives = 118/202 (58%), Gaps = 5/202 (2%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLA 100
           +F PR YQ+++ + AK RN I  L TG+GK  IA  LI+++A A++    K  K  +++ 
Sbjct: 13  SFTPREYQVELLDAAKERNIIVCLATGSGKIFIATKLIQELANAVRRPFHKDGKRTLYVV 72

Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
            TV +V QQ   IR  TD  V EY  ++ V+ WD++ W++E  +N VLVMT QI LD + 
Sbjct: 73  DTVAMVAQQASYIRHLTDLTVGEYVSSEAVEMWDNEDWEQEFLENQVLVMTSQICLDIME 132

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAM 220
            ++L ++ +  I++DECH A   HP  +IMKE+    + KP++ G+TA P++        
Sbjct: 133 CSYLQMNYLNLIILDECHRALREHPIRQIMKEYITCCE-KPRILGLTA-PLLNSTCDPGR 190

Query: 221 DCEGQISELESTLDSQVFTIED 242
             EG+I  LE  L S   T  D
Sbjct: 191 -LEGEIRRLELVLHSSAETASD 211



 Score =  124 bits (312), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 158/334 (47%), Gaps = 66/334 (19%)

Query: 415 VLC-IIFVERIIAAKVV-------ERFVKKVPFL-THLTVAYLTG--STTSVDALTPKVQ 463
            LC I+FV+    AK++        RF +   FL    TV  +    S      +  + Q
Sbjct: 658 ALCGIVFVDHRFTAKILYHLLNDLRRFDEDFTFLMAQYTVDKVADPISDPREAEIEHRKQ 717

Query: 464 KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
           +EVL+ FR  + NLL  T V+EEG+ VP C+ VI F++P+   SY+QS+GRAR  ++ +I
Sbjct: 718 EEVLKRFRMRECNLLVGTSVLEEGIDVPKCNLVIHFNVPQVYRSYVQSKGRARAQDAYYI 777

Query: 524 LMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC------------------- 564
           LM+E              RS++ V D A   + E   L+ C                   
Sbjct: 778 LMIEED------------RSKQFVNDLAQYFEIEQMLLRKCANREPTEEEESEADKYTDL 825

Query: 565 --TYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE----AY 618
             +Y  + S        SV   ++V L++RYC  LPSD +    P++  K+  +    ++
Sbjct: 826 IPSYCPSDS----PNSPSVNMATAVALVNRYCAKLPSDTFTRLTPMWNVKTTSDNGLISF 881

Query: 619 ECELTLPSNAPF-QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEP---- 673
            C + LP N+P  Q IVG    ++ L++++  LE C+ LH+   L+D+L+P  +E     
Sbjct: 882 ICTVRLPINSPVKQDIVGLPMPSRVLARRIAALETCKVLHKTQELDDNLMPVGKESFRVH 941

Query: 674 ---------SENNLISKKNESLPGAGTTKRKELH 698
                     E   +  ++ + P  GTTKR++ +
Sbjct: 942 EEEETTLALEELEEMVPRDSTEPRPGTTKRRQYY 975



 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 92/217 (42%), Gaps = 54/217 (24%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L+ TY   HEG+LS  RS  V N 
Sbjct: 1727 SVILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNL 1786

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDT- 1177
             L++LG  +     +  + F+P   W+ P       VP E     +E  +    + Q   
Sbjct: 1787 NLYRLGRRKVFGESMIATKFEPHDNWLPPCYY----VPRELEQALIEAGVPASHWNQADL 1842

Query: 1178 -----------------------KVVVGK--------------------PCDMGHRWMGS 1194
                                   K  +G+                    PC + +  +  
Sbjct: 1843 PALRDLSRDEICELVRERSEKLRKTTMGEDGLPEEVLLTSGPYTNIENLPCFIPYNLITQ 1902

Query: 1195 KTI-----ADCAEALIGAYYVGGGLIAALYMMKWLGI 1226
             +I     ADC EALIGAY +  G   AL  M WLGI
Sbjct: 1903 HSIPDKSVADCVEALIGAYLIACGPRGALLFMAWLGI 1939



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKALGD+ ES+ GA+ +D+ ++LD VWR++  ++   +      +P  P+REL+EL    
Sbjct: 2153 PKALGDVFESVAGAIFLDSGMSLDAVWRVYYRMMKSEIEQFSTNVPKSPIRELLELEPET 2212

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAA 1429
              F K      G  V   + +  K      +G  R+ + AK  AA
Sbjct: 2213 AKFGKPEKLADGRRVRVTVEVFGKGTF---KGIGRNYRIAKCTAA 2254



 Score = 45.4 bits (106), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 14/161 (8%)

Query: 898  ANGSVDAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSE 953
            A  + +A    D V++  +  +     + + EI  + + +S F G+   + KTF  Y+ +
Sbjct: 1142 AGFTFEATKYHDAVIMPWYRNQDQPQYFYVAEICGHLNPKSTFPGS---EYKTFDEYYFK 1198

Query: 954  KYGIVLIHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHM 1007
            KY I + +  QPLL +  +    N L     N  G     S + +K        Q  + +
Sbjct: 1199 KYNIQIQNSKQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-L 1257

Query: 1008 PPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
             PEL      P S+ +    LP ++ R+ +L+LA Q+R  +
Sbjct: 1258 VPELCTVHPFPASLWRKAVCLPCILYRINALLLADQIRRHV 1298


>gi|116283663|gb|AAH19805.1| Dicer1 protein [Mus musculus]
          Length = 427

 Score =  140 bits (353), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 183/374 (48%), Gaps = 36/374 (9%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K++A  I+   N   K  +FL  
Sbjct: 42  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVN 101

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L  L+ 
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKN 161

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPEE 218

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 219 LEEKIQKLERILRSDA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + +A+L  +    +  Y    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 273 ELEAALDFINDCNVAVYSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    F + +L  I +   L ++ F         ++DL Y+
Sbjct: 329 -LQKYIKHEQE-ELHRKFLL----FTDTLLRKIHA---LCEEYF------SPASLDLKYV 373

Query: 396 STKLHELLQLFLSF 409
           + K+ +LL++   +
Sbjct: 374 TPKVMKLLEILRKY 387


>gi|403179645|ref|XP_003337958.2| hypothetical protein PGTG_19535 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|375165150|gb|EFP93539.2| hypothetical protein PGTG_19535 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1431

 Score =  140 bits (352), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 116/208 (55%), Gaps = 10/208 (4%)

Query: 45  IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS-NGFKKLIIFLAPTV 103
           IPR+YQ ++ E AK+RN I   +TG GKT++AV LI   A   K+ N   ++  FL PT 
Sbjct: 20  IPRLYQTELLEEAKKRNIIIRADTGTGKTIVAVNLIAWTAVKTKAKNKNHQIQAFLVPTR 79

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            L HQQ + I+ H    ++ Y G    + W+ + W  E+N+ DVLV T QI  D + K +
Sbjct: 80  PLAHQQAEYIQKHCTLRIKAYTGDLQPELWNIRKWHSELNEVDVLVSTAQIFYDLISKGY 139

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVR-KGVS 217
             L+ V  ++ DE HH   NH Y +IM+  YH+     +   PK+ G+TASP+   K + 
Sbjct: 140 WKLEDVSLLIFDEAHHCRKNHVYNQIMRSHYHRLAKDSTVRLPKILGLTASPIWNFKDLE 199

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTE 245
            A   E  I  L+S L +Q++ ++  TE
Sbjct: 200 KA---ESDIKSLQSALAAQIYEVKKHTE 224



 Score =  117 bits (293), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 143/296 (48%), Gaps = 22/296 (7%)

Query: 395 ISTKLHELLQLFLSFGKS---TQVLCIIFVERIIAAKVVERFVKK-VPFLTHLTVAYLTG 450
           +S+K+  L ++ +++ +       LCI+FVER   A+++   +++ V     L  A LTG
Sbjct: 340 LSSKVIALYKILVNYKEKDDHNNFLCIVFVERRQHAQLLPILLERNVQLKDFLRPAALTG 399

Query: 451 STTSVD------ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
             +  +       +  + Q   +  FR G+ NL  AT V EEG+   +C  VIRFDL  T
Sbjct: 400 HGSGNENDLIGIKMDSRTQNRTVAKFRTGEHNLTIATSVAEEGLDFRSCRVVIRFDLITT 459

Query: 505 VSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC 564
              YIQSRGRAR   S +I+ML  G     NK       E  +   AL   P+   ++  
Sbjct: 460 WKGYIQSRGRARARESDYIVMLPTGTA---NKYLAFSGKEEQLK-AALYDRPQDELIEDG 515

Query: 565 TYVKTKSYI---VESTGASVTTDSSVNLIHRYCEMLPSDKYY-TPKPIFKYKSAEEAYEC 620
               T   I    +   + +T  ++ +L++  C+++P D++     P ++     E ++C
Sbjct: 516 EEESTPQLICQLADGKESILTYSAATSLLNDVCQLIPPDEFLPVVAPEYEMMELGERFKC 575

Query: 621 ELTLPSNAPF----QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE 672
            +TLP  A      +T  G     KN +K+    EAC+ L ++G LN+H LP  E+
Sbjct: 576 RVTLPPMAALPPSRRTFTGLEMGTKNGAKRSAAFEACKVLRELGVLNEHFLPQRED 631



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 128/297 (43%), Gaps = 57/297 (19%)

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLI---L 1063
            +P +L     +P ++ K    LPS+ + L   + A+ L   ++        P +L+   +
Sbjct: 893  LPLKLCQGTHIPRTIWKVFSYLPSLTRLLHDSIQATALFMRLD-------FPMTLLPRGI 945

Query: 1064 EALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHK 1123
            +ALT  G    +  + LE +GD+ LK A S H++L++ +K EG +S  RS +V N  L +
Sbjct: 946  QALTPPGVGVPWDYQTLETVGDAFLKLATSVHVYLSHLRKGEGDMSHVRSKSVDNDYLRR 1005

Query: 1124 LGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGK 1183
                  L   I    F   R+        R    E   D  E+P +G F           
Sbjct: 1006 KAIQANLPSSILGQRFRTDRF--------RDAQTE---DGKELP-NGNF----------- 1042

Query: 1184 PCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADL-----------EV 1232
                  R +  + ++D  EAL+GA ++ GG+   L     +G   DL            +
Sbjct: 1043 -----SRNVPRRVLSDVVEALLGAGFLTGGIELGLK----IGTALDLCFGGTTPWNERTL 1093

Query: 1233 SLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY--CYQ 1287
            ++  +      L S +  + + + +E KIGY F  K LL +A+TH S   F   CY+
Sbjct: 1094 NIAFEGTAHDKLASSI--LLKCQALEEKIGYVFKEKLLLVQALTHRSANSFMTNCYE 1148


>gi|283827860|gb|ADB44075.1| dicer-1 [Marsupenaeus japonicus]
          Length = 2482

 Score =  140 bits (352), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 172/691 (24%), Positives = 286/691 (41%), Gaps = 123/691 (17%)

Query: 415  VLCIIFVERIIAAKVVERFVKKVPFL----THLTVAYLTGSTTSVDA------LTPKVQK 464
            V  +IFV     AK++ R +K++  +      +   Y   +  SV           K Q+
Sbjct: 938  VCGLIFVHHRSMAKIIYRLLKELSDIGGDFAWIFPQYTVEAKESVKEDPRAAEAEHKKQE 997

Query: 465  EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFIL 524
            EVL  FR  + N+L +T V+EEG+ VP C+ V+RFD P    SY+ S GRAR H++ +  
Sbjct: 998  EVLRRFRHHECNILVSTRVLEEGIDVPQCNLVLRFDPPTDYRSYVHSCGRARGHDTFYFH 1057

Query: 525  MLERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVEST 577
            ++ +        ++   +    ++ S     +    R+     L +        YI  + 
Sbjct: 1058 LITKNQELSFLHDMATYSAFQQVLVSHCGSVEVGTDRE----VLSSEANAAHAPYITPAA 1113

Query: 578  GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-----YECELTLPSNAPFQ- 631
             A     S++ L+++YC  LPSD +     ++  +  EE      Y+C++ LP N+P + 
Sbjct: 1114 AAVTMA-SAIGLLNKYCAKLPSDTFTRLTAMWDVEEMEETAGALKYKCKIMLPINSPLKG 1172

Query: 632  TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE----------PSENNLISK 681
            TI GP     +L+K    LE C +LHQ+G L+D L P  +E          P  ++ +  
Sbjct: 1173 TIEGPWQDKVSLAKMAAALECCRRLHQMGELDDQLQPVGKESMKLDDHLCAPPADDQVP- 1231

Query: 682  KNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN--FACSIVTE------- 732
              E +P  GTTKR++ +       L+G    K G+ L  YK +    C I  E       
Sbjct: 1232 --EGMPRPGTTKRRQYYYKKVAVCLTGE-QPKQGLDLFVYKLDMVLTCPIPDEQNTRGRK 1288

Query: 733  IY-----SGFVLLIESELDNDVGNFELELYLVSKTVKATVSS-SGQVHLDADQMSKAKCF 786
            IY     S    +I ++  + V  F   ++  S  V   V     +V++  DQ+S  + F
Sbjct: 1289 IYRPEQSSRSFGIITTKPISQVSGF--PVFTRSGEVVVHVQEIERKVNVTQDQLSALQYF 1346

Query: 787  QELFFNGL--FGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRI 844
             +  F  +    K  +K   + +R  F                ++PL   N    GS  I
Sbjct: 1347 HKFTFTHVLRLEKYPIKFDPTNARTAF---------------YIVPLNKFN----GSESI 1387

Query: 845  NWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDA 904
            +W          EF+KE    G              R  P +     K            
Sbjct: 1388 DW----------EFVKEIQSEGDP------------RPVPPQDDARKK-------FQFQH 1418

Query: 905  KNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLI 960
               +D VV+  +      + + + EI  + + +S F    D   +TF  Y+  KYG+ + 
Sbjct: 1419 DLYEDAVVMPWYRNQDQPQYFYVAEICTHLNPQSDF---PDAGFETFEKYYLTKYGLQIC 1475

Query: 961  HPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVR 1014
            +  QPLL +  +    NLL   + N  G     + + +K        Q  + + PEL   
Sbjct: 1476 NLAQPLLDVDHTSGRLNLLTPRHVNRKGVALPTTSEETKRAKRENLQQKQI-LVPELCTI 1534

Query: 1015 VDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
               P S+ +    LP+++ R+ +L+LA QLR
Sbjct: 1535 HPFPASLWRKAVCLPTILYRINALLLADQLR 1565



 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 134/522 (25%), Positives = 214/522 (40%), Gaps = 147/522 (28%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++  L+ TYP++HEG+LS  RS  V N 
Sbjct: 1972 SVILQALTMSNANDGVNLERLETIGDSFLKYAITTFLYCTYPQRHEGKLSYLRSKQVSNL 2031

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVP---CECGV-----DTLEVPLDG 1170
             L++LG  + L   +  + F+P   W+ PG    R +     + GV     +  ++P   
Sbjct: 2032 NLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPRELEEALIDSGVPAGHWNMADLPGLH 2091

Query: 1171 KFFTQDTKVVVGK----------------------PCD---------MGHRWMGSKTIAD 1199
               + + + +V +                      P D         +    +  K+IAD
Sbjct: 2092 DLASDEIRRLVQERSEQIKRSKNEQATSELMATQNPHDLPIFIPYNLLTQHSIPDKSIAD 2151

Query: 1200 CAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVD-----DCITRASLRS------YV 1248
            C EALIGAY    G   AL  M WLGI   L  +L D       I    L S      + 
Sbjct: 2152 CVEALIGAYLTTCGPRGALLFMSWLGIKV-LPCTLEDSPETGQLIIYGHLESPQSPLYHC 2210

Query: 1249 PRINEIKDI----------ESKIGYEFTVKFLLQEAITHASVQEFY------CYQNL--- 1289
            P  +  K++          E KIGY F  +  L +A THAS   +Y      CYQ L   
Sbjct: 2211 PLTDTKKELDLLLSGYQVFEEKIGYTFQDRSYLLQAFTHAS---YYKNRLTDCYQRLEFL 2267

Query: 1290 -----------------------------------------------YKHLQHCSTLLLS 1302
                                                           +K+ +H S  L  
Sbjct: 2268 GDAVLDYLITRHLYEDKRQHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDR 2327

Query: 1303 QITEYVKSFPKPGETTDS------------GPSMKAPKALGDLLESIVGAVLIDTKLNLD 1350
             I ++VK   + G   +                ++ PKALGD+ ES+ GA+ +D+  +LD
Sbjct: 2328 VIRDFVKMQEENGHKINEEYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLD 2387

Query: 1351 EVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLK 1408
             VW ++  ++   +      +P  P+REL+E+      F K        +V  ++R+ ++
Sbjct: 2388 AVWSVYYTMMCREIEQFSGVVPKSPIRELLEMEPETAKFGKPE-----RLVDGKVRVSVE 2442

Query: 1409 DVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCEKRISKG 1446
               + G+G      R+ + AK  AA + L+ L+  +   ++G
Sbjct: 2443 ---IFGKGSFSGVGRNYRIAKSTAAKRALRHLKKLQMMANQG 2481



 Score = 57.4 bits (137), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 145/337 (43%), Gaps = 27/337 (8%)

Query: 38  STNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS---NGFKK 94
           + +S  F PR YQ+++ +   + NT++VL + + +T +  M+ +++A   +S    G  +
Sbjct: 9   NVHSTIFTPREYQVELVDACLKGNTLSVLASRSTRTFLITMVTREMAHLTRSKEQGGKGQ 68

Query: 95  LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
             +    +   + +  + I+ +T+  V  Y   + VD W    W     +  V++MT  +
Sbjct: 69  RTLLTGWSGPGLVRAGEAIQQNTNLAVTTYTRLEQVDGWLPSRWSHTFTEAQVIIMTVDV 128

Query: 155 LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRK 214
           L   L    L LD++  +VI + H      P  K++           ++ GMT SPV+  
Sbjct: 129 LEKGLETGLLQLDMLNLLVITDAHRVATFPPLIKVLNLC-----RGCRILGMT-SPVLSH 182

Query: 215 GVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKES---CRFYDQSKFCGSDLK 271
             S     E  ++ L+      V T  +   +  +V    E    CR  D  +    +L+
Sbjct: 183 ACSPPQ-LESFLTHLQDATSCVVDTSSEIVTVLRYVNKPVEKIVMCRDPDPDERSEVELE 241

Query: 272 GKLEVSWS-------KFDASLSKLQGSQLNCY-KDMDDKHKTLRKQLSDYHAKILYCLDE 323
            +  V  +       ++D  L ++ G +   +  D+ D +K  R+ L D+    L  L+ 
Sbjct: 242 VRRLVGEALSFLDNHRYD--LVEVYGPEYQEFCDDLPDPNKEPRQILMDF----LDVLNN 295

Query: 324 LGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYF 360
           LGL CA  A    L +V K +++    R   L C  F
Sbjct: 296 LGLWCADRAALYALVEVEKLKKKTAYDRHYLLLCMIF 332


>gi|403171947|ref|XP_003331125.2| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|375169644|gb|EFP86706.2| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1453

 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 117/208 (56%), Gaps = 10/208 (4%)

Query: 45  IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA-QAIKSNGFKKLIIFLAPTV 103
           IPR+YQ ++ E AK+RN I   +TG GKT +A+ LI  IA Q+  ++   ++  FLAPT 
Sbjct: 21  IPRLYQAELLEEAKKRNIIIRADTGTGKTFVALSLITWIAAQSPANHDDHRIQAFLAPTR 80

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            L HQQ + I+ H    V+ Y G    + W+   W  E+N+ DV+V T QI  D + K +
Sbjct: 81  PLAHQQAEYIQKHCTLRVKAYTGDLQPELWNIDKWHSELNEVDVIVSTAQIFYDLISKGY 140

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVR-KGVS 217
             L+ V  ++ DE HH   NH Y +IM+  YH+     +   PK+ G+TASP+   K + 
Sbjct: 141 WKLEDVSLLIFDEAHHCRKNHIYNQIMRSHYHRLAKDPTVRLPKILGLTASPIWNYKDLE 200

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTE 245
            A   +  I  L+S L +Q++ ++  TE
Sbjct: 201 RA---DSDIKSLQSALAAQIYEVKTHTE 225



 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 142/295 (48%), Gaps = 22/295 (7%)

Query: 395 ISTKLHELLQLFLSFGKSTQ---VLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTG 450
            S+K+  L ++ +S+ +       LCI+FVER   A+++   +++   L   L    LTG
Sbjct: 341 FSSKVAVLNKILVSYKEKDNHDNFLCIVFVERRQHAQLLPFLLERNGQLKGFLRPTALTG 400

Query: 451 -STTSVDALT-----PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
            +  +V+ L       + Q + +  FR G+ NL  AT V EEG+   +C  VIRFDL  T
Sbjct: 401 HAGGNVNDLIGIKMDSRTQNKAVAKFRTGEYNLTIATSVAEEGLDFRSCRVVIRFDLITT 460

Query: 505 VSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC 564
              YIQSRGRAR   S +I+ML  G     NK  +    E  +   AL   PE   ++  
Sbjct: 461 WKGYIQSRGRARARESDYIVMLPNGTT---NKYLEFTGKEEQL-KAALYNRPEDELIEEG 516

Query: 565 TYVKTKSYIVESTGAS---VTTDSSVNLIHRYCEMLPSDKYY-TPKPIFKYKSAEEAYEC 620
               T   I +  G     +T  ++ +L++  C+++P D++     P ++     + ++C
Sbjct: 517 EEEWTPQLICQLAGGKESILTYSAATSLLNDVCQLIPPDEFLPVVAPQYEITWLGDNFQC 576

Query: 621 ELTLPSNAPF----QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVE 671
           ++TLP  A      +T  G     K  +K+    EAC+ L ++  LN H LP  E
Sbjct: 577 QVTLPPMAALHPSQRTFTGLAMATKKDAKRSAAFEACKVLRELDVLNQHFLPQRE 631



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 187/468 (39%), Gaps = 128/468 (27%)

Query: 992  SKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCH 1051
            SKS     +P   + +P +L     +P S+ K    LPS+ + L   + A+ L + ++  
Sbjct: 880  SKSESTVVQPH-RILLPLKLCKGTHIPRSMWKVFSYLPSLTRLLHDTLQATALFKRLD-- 936

Query: 1052 SRNFHIPSSLIL---EALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQL 1108
                  P+  +L   +ALT  G    +  + LE LGD+ LK A S H++L++ KK EG +
Sbjct: 937  -----FPTISLLHGIQALTPPGGGVPWDYQTLETLGDAFLKLATSVHVYLSHLKKGEGDM 991

Query: 1109 SARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPL 1168
            S  RS +V N+ L +      L   I               LS  P              
Sbjct: 992  SHVRSRSVDNAYLRRKAIQANLPASI---------------LSQHP-------------- 1022

Query: 1169 DGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI-- 1226
                    T+   G P     R +  + ++D  EAL+GA ++ GG+   L +   L +  
Sbjct: 1023 -------STRRRQGAPQREFSRKIPKRVLSDVVEALLGAGFLTGGIELGLKIGTALDLCF 1075

Query: 1227 -----DADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281
                  ++  V++  + IT  +L   +  + + + +E KIGY F  K LL +A+TH S  
Sbjct: 1076 GGTTPWSERPVNIGLESITHDALEPSI--LLKCQALEKKIGYVFKEKLLLVQALTHRSAN 1133

Query: 1282 EFY--CY----------------QNLYKHLQHCS----TLLLSQIT-------------- 1305
             F   CY                ++ YK   H +    TL  +++               
Sbjct: 1134 SFMTNCYEREEWLGDAVIDMWIVEHAYKRFDHATAEELTLARAKVVSNGSLGFLALKKLG 1193

Query: 1306 --------------------EYVKSFPKPGETTDSGPSM----KAPKALGDLLESIVGAV 1341
                                E +K F K  E   +  ++      PK L D+LE+IVGAV
Sbjct: 1194 LQEIIMHASENFEQACTEAIEAIKPFAKIEEYFSTIDNLFVVFDPPKILNDVLEAIVGAV 1253

Query: 1342 LIDTKLNLDEVWR----IFK---PILSPIVTPDKLELPPLRELIELCD 1382
             ID+  NL   +R    IF+   P LS +V  D     PL  ++ L D
Sbjct: 1254 FIDSGFNLHTAYRTLDIIFEDVIPGLSRLVARD-----PLSTMLRLRD 1296


>gi|38174359|gb|AAH61198.1| Dicer1 protein, partial [Mus musculus]
          Length = 421

 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 183/374 (48%), Gaps = 36/374 (9%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
           + PR YQ+++ E A   NTI  L TG+GKT IAV+L K++A  I+   N   K  +FL  
Sbjct: 32  YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVN 91

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           + + V QQ   +R H+D +V EY   +    W  + W +E  K+ VL+MT  + L  L+ 
Sbjct: 92  SANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKN 151

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
            +LSL  +  +V DECH A  +HPY +IMK       + P++ G+TAS  +  G     +
Sbjct: 152 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPEE 208

Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
            E +I +LE  L S     E  T++ V      + C        CG  +D  G  E    
Sbjct: 209 LEEKIQKLERILRSDA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 262

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
           + +A+L  +    +  +    D     ++ LSD  A ++    +C D++  +   E    
Sbjct: 263 ELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 318

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
            L+K +K ++E E++R+  L    F + +L  I +   L ++ F         ++DL Y+
Sbjct: 319 -LQKYIKHEQE-ELHRKFLL----FTDTLLRKIHA---LCEEYF------SPASLDLKYV 363

Query: 396 STKLHELLQLFLSF 409
           + K+ +LL++   +
Sbjct: 364 TPKVMKLLEILRKY 377


>gi|212723814|ref|NP_001131630.1| uncharacterized protein LOC100192986 [Zea mays]
 gi|194692090|gb|ACF80129.1| unknown [Zea mays]
          Length = 365

 Score =  137 bits (346), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 117/394 (29%), Positives = 167/394 (42%), Gaps = 99/394 (25%)

Query: 1108 LSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVP 1167
            L+  +   + N+ L +L     L GYIR  AF+P+ W+ PG           G D     
Sbjct: 2    LTKMKKNVISNAALCQLACSNNLVGYIRSEAFNPKTWIVPG----------VGYDI---- 47

Query: 1168 LDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGID 1227
                             CD   R + SK IAD  EALIGAY    G  AA   +K LG+D
Sbjct: 48   -----------------CDRSLRKLKSKRIADSVEALIGAYLSTAGEQAAYIFLKSLGMD 90

Query: 1228 ADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ------ 1281
             +     ++  IT  +          +K +E  + Y F    LL EA+TH S Q      
Sbjct: 91   IEFHKMPIERVITIKA-----EEFINVKSLELLLDYSFNDPSLLMEALTHGSYQIAGTTP 145

Query: 1282 -------------------EFY----------------------CYQN------LYKHLQ 1294
                                FY                      CY +      L+KH+ 
Sbjct: 146  CYQRLEFLGDAVLDHIFTDYFYHQYPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHVL 205

Query: 1295 HCSTLLLSQITEYV----KSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLD 1350
            H S+ L  ++ +Y+    +SF  P    ++G S+  PK LGD++ESI GA+ ID K +  
Sbjct: 206  HSSSALHKRMADYLDKFEQSFSGPSHGWEAGISL--PKVLGDVVESIAGAIYIDAKHDKG 263

Query: 1351 EVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLK 1408
             VWR  K IL P+VTPD L+  P++EL E CDS GY ++   T    +  V AE+R +  
Sbjct: 264  VVWRSMKRILEPLVTPDTLQNDPVKELQEFCDSKGYTLEYTVTRDNGVSSVVAEVRTEGT 323

Query: 1409 DVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKR 1442
                   G   S+  AK  AAS +L+ L+  + +
Sbjct: 324  TYKATRTG--FSKLDAKKLAASSVLRDLKAADTK 355


>gi|289711908|gb|ACC62400.2| ribonuclease III [Penaeus monodon]
          Length = 2473

 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 173/692 (25%), Positives = 289/692 (41%), Gaps = 124/692 (17%)

Query: 415  VLCIIFVERIIAAKVVERFVKKVPFL----THLTVAYLTGSTTSVDA------LTPKVQK 464
            V  +IFV     AK++ R +K++  +      +   Y   +  SV           K Q+
Sbjct: 928  VCGLIFVHHRSMAKIIYRLLKELSDIGGDFAWIFPQYTVEAKESVKEDPRAAEAEHKKQE 987

Query: 465  EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFIL 524
            EVL  FR  +  +L +T V+EEG+ VP C+ V+RFD P    SY+ S GRAR H++ +  
Sbjct: 988  EVLRRFRHHECKILVSTRVLEEGIDVPQCNLVLRFDPPTDYRSYVLSCGRARGHDTFYFH 1047

Query: 525  MLERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVEST 577
            ++ +        ++   +    ++ S     +    R+     L +        Y+  + 
Sbjct: 1048 LITKNQEISFLHDMATYSAFQQVLVSHCGSVEVGTDRE----VLSSEANAAHAPYLTPAE 1103

Query: 578  GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA------YECELTLPSNAPFQ 631
             A+VT  S++ L+++YC  LPSD +     ++  +  EEA      Y+C++ LP N+P +
Sbjct: 1104 -AAVTMASAIGLLNKYCAKLPSDTFTRLTAMWDVEEIEEAEVEIPKYKCKIMLPINSPLK 1162

Query: 632  -TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE----------PSENNLIS 680
             TI GP     +L+K    LE C +LHQ+G L+D L P  +E          P  ++ + 
Sbjct: 1163 GTIEGPWQSKVSLAKMAAALECCRRLHQMGELDDQLQPVGKESMKLDDHLCAPPADDQVP 1222

Query: 681  KKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN--FACSIVTE------ 732
               E +P  GTTKR++ +       L+G    K G+ L  YK +    C I  E      
Sbjct: 1223 ---EGMPRPGTTKRRQYYYKKVAVCLTGE-QPKQGLDLFVYKLDMVLTCPIPDEQNTRGR 1278

Query: 733  -IY-----SGFVLLIESELDNDVGNFELELYLVSKTVKATVSS-SGQVHLDADQMSKAKC 785
             IY     S    +I ++  + V  F   ++  S  V   V     +V++  DQ+S  + 
Sbjct: 1279 KIYRPEQSSRSFGIITTKPISQVSGF--PVFTRSGEVVVHVQEIERKVNVTQDQLSALQY 1336

Query: 786  FQELFFNGL--FGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWR 843
            F +  F  +    K  +K   + +R  F                ++PL   N    GS  
Sbjct: 1337 FHKFTFTHVLRLEKYPIKFDPTNARTAF---------------YIVPLNKFN----GSEG 1377

Query: 844  INWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVD 903
            I+W          EF+KE    G              R  P +     K           
Sbjct: 1378 IDW----------EFVKEIQSEGDP------------RPVPPQDDARKK-------FQFQ 1408

Query: 904  AKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVL 959
                +D VV+  +      + + + EI  + + +S F    D   +TF  Y+  KYG+ +
Sbjct: 1409 HDLYEDAVVMPWYRNQDQPQYFYVAEICTHLNPQSDF---PDAGFETFEKYYLTKYGLQI 1465

Query: 960  IHPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLV 1013
             +  QPLL +  +    NLL   + N  G     + + +K        Q  + + PEL  
Sbjct: 1466 CNLAQPLLDVDHTSGRLNLLTPRHVNRKGVALPTTSEETKRAKRENLQQKQI-LVPELCT 1524

Query: 1014 RVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
                P S+ +    LP+++ R+ +L+LA QLR
Sbjct: 1525 IHPFPASLWRKAVCLPTILYRINALLLADQLR 1556



 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 134/521 (25%), Positives = 214/521 (41%), Gaps = 145/521 (27%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++  L+ TYP++HEG+LS  RS  V N 
Sbjct: 1963 SVILQALTMSNANDGVNLERLETIGDSFLKYAITTFLYCTYPQRHEGKLSYLRSKQVSNL 2022

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVP---CECGV-----DTLEVPLDG 1170
             L++LG  + L   +  + F+P   W+ PG    R +     + GV     +  ++P   
Sbjct: 2023 NLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPRELEEALIDSGVPAGHWNMADLPGLH 2082

Query: 1171 KFFTQDTKVVVGK----------------------PCD---------MGHRWMGSKTIAD 1199
               + + + +V +                      P D         +    +  K+IAD
Sbjct: 2083 DLASDEIRRLVQERSEQIKRSKSEQATSELTATQNPHDLPIFIPYNLLTQHSIPDKSIAD 2142

Query: 1200 CAEALIGAYYVGGGLIAALYMMKWLGIDA---DLEVSL-VDDCITRASLRS------YVP 1249
              EALIGAY    G   AL  M WLGI      LE S    + IT   L S      + P
Sbjct: 2143 YVEALIGAYLTTCGPRGALLFMSWLGIKVLPCTLESSPEASELITYGHLESPQSPLYHCP 2202

Query: 1250 RINEIKDI----------ESKIGYEFTVKFLLQEAITHASVQEFY------CYQNL---- 1289
              +  K++          E KIGY F  +  L +A THAS   +Y      CYQ L    
Sbjct: 2203 LTDTRKELDLLLSGYQVFEEKIGYTFRDRSYLLQAFTHAS---YYKNRLTGCYQRLEFLG 2259

Query: 1290 ----------------------------------------------YKHLQHCSTLLLSQ 1303
                                                          +K+ +H S  L   
Sbjct: 2260 DAVLDYLITRHLYEDKRQHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRV 2319

Query: 1304 ITEYVKSFPKPGETTDS------------GPSMKAPKALGDLLESIVGAVLIDTKLNLDE 1351
            I ++VK   + G   +                ++ PKALGD+ ES+ GA+ +D+  +LD 
Sbjct: 2320 IRDFVKMQEENGHKINEEYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDA 2379

Query: 1352 VWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKD 1409
            VW ++  ++   +      +P  P+REL+E+      F K        +V  ++R+ ++ 
Sbjct: 2380 VWSVYYTMMCREIEQFSGVVPKSPIRELLEMEPETAKFGKPE-----RLVDGKVRVSVE- 2433

Query: 1410 VLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCEKRISKG 1446
              + G+G      R+ + AK  AA + L+ L+  +   ++G
Sbjct: 2434 --IFGKGSFSGVGRNYRIAKSTAAKRALRHLKKLQMMANQG 2472



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 146/337 (43%), Gaps = 27/337 (8%)

Query: 38  STNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS---NGFKK 94
           + +S  F PR YQ+++ +   + NT++VL + + +T +  M+ +++A   +S    G  +
Sbjct: 9   NVHSTIFTPREYQVELVDACLKGNTLSVLASRSTRTFLITMVTREMAHLTRSKEQGGKGQ 68

Query: 95  LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
             +    +   + +  + I+ +T+  V  Y   + V+ W    W +   +  V++MT  +
Sbjct: 69  RTLLTGWSGPGLVRAGEAIQQNTNLAVTTYTRLEQVEGWLPSRWSQTFTEAQVIIMTVDV 128

Query: 155 LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRK 214
           L   L    L LD++  +VI + H      P  K++           ++ GMT SPV+  
Sbjct: 129 LEKGLETGLLQLDMLNLLVITDAHRVATFPPLIKVLNLC-----RGCRILGMT-SPVLSH 182

Query: 215 GVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKES---CRFYDQSKFCGSDLK 271
             S     E  ++ L+      V T  +   +  +V    E    CR  D  +    +L+
Sbjct: 183 ACSPPQ-LESFLTHLQDATSCVVDTSSEIVTVLRYVNKPVEKIVMCRDPDPDERSEVELE 241

Query: 272 GKLEVSWS-------KFDASLSKLQGSQLNCY-KDMDDKHKTLRKQLSDYHAKILYCLDE 323
            +  V  +       ++D  L ++ G +   +  D+ D +K  R+ L D+    L  L+ 
Sbjct: 242 VRRLVGEALSFLDNHRYD--LVEVYGPEYQEFCDDLPDPNKEPRQILMDF----LDVLNN 295

Query: 324 LGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYF 360
           LGL CA  A    L +V K +++    R   L C  F
Sbjct: 296 LGLWCADRAALYALVEVEKLKKKTAYDRHYLLLCMIF 332


>gi|391328911|ref|XP_003738926.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
          Length = 1347

 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 121/198 (61%), Gaps = 8/198 (4%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS---NGFKKLIIFLAPTV 103
           R +QL++FE+A ++N I  L TG GKT+++ +LIK++    +    NG ++  +FLAPTV
Sbjct: 27  RHFQLELFELAVKQNVIICLGTGTGKTLVSALLIKELLHQTRERLENGGRR-SVFLAPTV 85

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            LV QQ   ++ H +  V  + GA  VD+W    W +E ++++VLVMTP IL + L   F
Sbjct: 86  PLVQQQTAYLKRHLNASVASFVGAMRVDDWTGTQWWQEFDQHNVLVMTPTILNNILNANF 145

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMD 221
           +S+  +  ++ DECH ATG  PY +IM+  Y  +   ++P++ G+TAS + ++  +S M 
Sbjct: 146 VSMANINLLIFDECHCATGKDPYVQIMQNHYMSTHPTSRPRILGLTASVLNKRVKTSEM- 204

Query: 222 CEGQISELESTLDSQVFT 239
              +I ELE  L + + T
Sbjct: 205 -MDRIEELECKLGANLVT 221



 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 168/366 (45%), Gaps = 40/366 (10%)

Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
           CLE + +   +      S +  ++ L E    +  A  +A++    +G     A      
Sbjct: 270 CLEVIRRKIRQLNNMILSEIAAEHRLREAKE-LRQAYEIAERTICSWGAPLEDA------ 322

Query: 396 STKLHELLQLFLSFGKSTQVLC-IIF-VERIIAAKV---VERFVKKVP----FL------ 440
           S K  +L+ +  +F    + LC I+F VER     +   ++  +KK P    FL      
Sbjct: 323 SEKAWKLMNVLEAFRTVEEELCGIVFTVERSTVFALCSWIKEMIKKYPERWGFLRCDFVI 382

Query: 441 -THLTVAY---LTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496
             H    Y    + S    D+ + + Q+ VL+ FR  ++NLL AT VIEEG+ +P C+ V
Sbjct: 383 GQHGMTLYGPEYSESFQVPDSDSIRHQERVLQDFRKRQLNLLIATSVIEEGVDIPACNLV 442

Query: 497 IRFDLPKTVSSYIQSRGRARQHNSQFIL--------MLERGNLKQRNKLFDIIRSERSVT 548
           +R+D PK + SY+QSRGRAR + S ++L        ++ +   + +N  F ++R   +  
Sbjct: 443 LRYDPPKNMRSYVQSRGRARGNPSMYLLFADVKAAPVIHQDIFQFKNIEFQLLRYCNAHH 502

Query: 549 DTALSRDPEACFLKACTYVKTKSYIVESTG--ASVTTDSSVNLIHRYCEMLPSDKYYTPK 606
            T +        L   +++      V      A +T  ++  ++  YC+ L SD+Y   K
Sbjct: 503 RTPIESSQMFLHLYNRSHLSNIYSKVHPNNCRAMITPFAARQILQWYCDSLGSDRYTLQK 562

Query: 607 PIFKYKSA---EEAYECELTLPSNAPFQTIV-GPTSRNKNLSKQLVCLEACEKLHQVGAL 662
           P + Y++A    +   C + LP  +P Q IV G    +   ++    +    +L+ +G L
Sbjct: 563 PDYVYETAASPSKLVRCGIHLPRQSPLQMIVYGAWEESSLTARTSAAINVLSRLYSLGEL 622

Query: 663 NDHLLP 668
            +HLLP
Sbjct: 623 TEHLLP 628



 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 155/399 (38%), Gaps = 115/399 (28%)

Query: 1052 SRNFHIPSSL----------ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYP 1101
            S  F++P+ L          IL+ALT L   +    ERLE++GDS LK AV+ H +    
Sbjct: 967  SMKFNVPTDLENCDGPSPADILKALTPLYITDIVDSERLEVIGDSFLKIAVTLHFYQELI 1026

Query: 1102 KKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVPCECG 1160
              +EG+L+ RR   + N +L +    + +   +    F  R  +V PG            
Sbjct: 1027 SSNEGELTTRRCRIISNMSLLQHAVPKGIHEMVECVKFRVRVNFVPPGAQE--------- 1077

Query: 1161 VDTLEVPLDGKFFTQDTKVVVGKPCDMGHR--WMGSKTIADCAEALIGAYYVGGGLIAAL 1218
                   L G+    D         +M  R  +  SK  AD  EALIG Y    G + AL
Sbjct: 1078 ----RALLSGRCLKADV-------AEMSRRSQYYKSKMCADSVEALIGVYLEKCGPVGAL 1126

Query: 1219 YMMKWLGI------DADL----EVSLVDDCITRASLRSYVPRIN-EIKDIESKIGYEFTV 1267
              ++WL I      + D     E+ L +    R   ++ V R   EI  ++  +GY F  
Sbjct: 1127 EYLRWLDIPLGRYNEGDFLDRFELPLPEPL--REDKKADVERWRKEILTVQETLGYIFQN 1184

Query: 1268 KFLLQEAITHASVQ-----------EF------------YCY------------------ 1286
            + L+ EAITH S +           EF            Y Y                  
Sbjct: 1185 ELLVLEAITHKSYRYNRLTRSYERLEFLGDAVIDYLISKYIYTADSDLNPGQLTDVRASL 1244

Query: 1287 ------------QNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKA-------- 1326
                          L+  +QH S LLL     +V+ + +  +  D    M          
Sbjct: 1245 VSNNTFAAIIVDNKLHTVMQHHSPLLLKLTNRFVE-YRETEKRIDILAHMMGEEDEDLED 1303

Query: 1327 ------PKALGDLLESIVGAVLIDTKLNLDEVWRIF-KP 1358
                  PK LGDL+ES++GAV +D+  +LD VW +  KP
Sbjct: 1304 LEQVDIPKPLGDLMESLMGAVFLDSGKDLDVVWAVLSKP 1342


>gi|328874858|gb|EGG23223.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
          Length = 2645

 Score =  137 bits (345), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 134/522 (25%), Positives = 230/522 (44%), Gaps = 71/522 (13%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK------DIAQAIKSNGFKKLII 97
           F P  YQ +    +  +NTI VL TG GKT IAVM++K      ++ Q  K    K++I+
Sbjct: 167 FKPYDYQWESTRQSVPKNTIVVLPTGKGKTKIAVMVMKILYQLNNLKQEEKETYQKRMIL 226

Query: 98  FLAPTVHLVHQQYDVIRVH-TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
           FL   + L  QQ   I+    D ++    G     E +S    ++  + DV+V T  I+ 
Sbjct: 227 FLTNKIPLAEQQAKAIKQDCPDLKIHLRTG-----EGESGNIMED-RQYDVIVCTADIIR 280

Query: 157 DALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN--KPKVFGMTASPVVRK 214
           + +     S+     ++ DECHHATG H + K+ +E   K D   +P++ G+TASP    
Sbjct: 281 NWIGYNMASMKDFYLVIYDECHHATGEHVFVKLAEEI-KKLDREFQPRILGLTASPST-- 337

Query: 215 GVSSAMDCEGQISELESTLDSQVFT-----IEDKTEMEVFVPS----------------A 253
           G          I  LE  + S +F      +E+  EME  V                  A
Sbjct: 338 GGKDTSQIMKNIDALERNIGSTIFRPKSLPMENPLEMESIVYQFTRQEIGTRKEIDSVLA 397

Query: 254 KESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRK-QLSD 312
           + + R  D+ KF   +L+   + +++ F   L KL           DD H+     +++ 
Sbjct: 398 EATKRLCDELKFTDPNLRYN-DQNYTSFYQGLKKL-----------DDYHRDQNPPRMTS 445

Query: 313 YHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL-----HV 367
             + +LY L  L  I   + ++  L  +++  +  E+    +    Y+++++        
Sbjct: 446 VPSGLLYKLFNLIGILQVQGIQAVLTSIVEDLQMDELDSYYTSAYMYYMKKIQKGVLDQF 505

Query: 368 IGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAA 427
           +G+  PL       +   Y    D       ++  ++  ++    + V  I+FV+     
Sbjct: 506 VGTNPPL-------YSSKYKALRDY------INNFIEKSVANDTISDVRGIVFVKTRQGC 552

Query: 428 KVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEG 487
             + + +KK P   H+      G T   D ++ + Q  ++ESFR G    L AT V+EEG
Sbjct: 553 SDLIKLLKKEPVNLHIKSKLFVGHTGE-DGMSTEKQNRIMESFRKGDCKFLVATSVLEEG 611

Query: 488 MHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG 529
           + V  C+ VI FD    + + IQ RGRAR  + +F  +++ G
Sbjct: 612 IDVQQCNMVISFDPDLNLRNMIQRRGRARSKDGKFAYLIKEG 653


>gi|330798142|ref|XP_003287114.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
 gi|325082892|gb|EGC36360.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
          Length = 2341

 Score =  137 bits (344), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 142/519 (27%), Positives = 235/519 (45%), Gaps = 58/519 (11%)

Query: 35  PSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN---- 90
           P+  T   N  P  YQ++ F     +NT+ +L TG GKT+I++M + +  +   S     
Sbjct: 250 PTVPTLKNNIEPNSYQVESFYHICAQNTLLILPTGMGKTLISIMGLMEFHRLNNSQEDTG 309

Query: 91  GFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVM 150
             K++ +FL   V LV QQ   I  +++ +  + YG    ++  S+  +KE    DVLV 
Sbjct: 310 DSKRVCLFLVDRVPLVAQQAKAIEEYSNLKTIKLYGEINKEDLRSKIKEKEY---DVLVS 366

Query: 151 TPQILLDALRKAFLSLDIVCFIVIDECHHATG-NHPYTKIMKEFYHKSDNK--PKVFGMT 207
           T    +  L   ++ ++   FIV DE HHA G +HP+ + +  F  KSD K  P++ G+T
Sbjct: 367 TVGSFVSLLESKYVKIEEFYFIVFDEVHHAGGGSHPFNQTIN-FIKKSDIKTWPRILGLT 425

Query: 208 ASPVVRKGVSSAMDCEGQISELESTLDSQVFT-----IEDKTEMEVFVPSAKESCRFYDQ 262
           AS +     +  +    +I  +E  + S++F       E+ TE    V  +       DQ
Sbjct: 426 ASLINIGNNTDEVIVSNKIKTIEDLMLSKIFKPLKFLSEELTEKPTIVDYSAN-----DQ 480

Query: 263 SKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHK-TLRKQLSD--YHAK--- 316
            K     +K  L    ++    ++K+  +  N  +D+DD    + R  L    + AK   
Sbjct: 481 EKQAEDIIKTLLRDQSARLKDMVTKVGKNPYND-EDLDDPTSISFRFALERIIFKAKENL 539

Query: 317 -------ILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIG 369
                   L  + EL  I A       LE+++K     EI        +Y          
Sbjct: 540 TIVNRCRSLLMIFELFSILATNGPLQTLEELVKI---IEIEENQDYHSEYL--------- 587

Query: 370 SALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQL---FLSFGKSTQVLCIIFVERIIA 426
            AL   + +F D         DL   S+K    L+    FL+    + +  I+FVE    
Sbjct: 588 EALRTTEALFDDHS-------DLNRYSSKYSVFLEQLYGFLTQNDVSSIKIIVFVESRAG 640

Query: 427 AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEE 486
           A  +   +KK  F   L    L G +   D ++   Q+++++ FR GK  L+ +T+V+EE
Sbjct: 641 AARLTELLKKEAFNDILNCKLLVGQSGD-DGMSSHKQQKIIKKFRDGKCKLIVSTNVLEE 699

Query: 487 GMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           G+ +  C+ VI +D   ++ S +Q RGRAR  NSQFI++
Sbjct: 700 GIDIKECNMVICYDSVLSLKSLVQRRGRARSENSQFIVI 738


>gi|405958476|gb|EKC24603.1| Putative ATP-dependent RNA helicase DDX58 [Crassostrea gigas]
          Length = 1198

 Score =  137 bits (344), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 144/546 (26%), Positives = 242/546 (44%), Gaps = 85/546 (15%)

Query: 47   RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
            R YQ+++ + A + +N I V  TG+GKT +A+ +I++  +  +     K + FL     L
Sbjct: 505  RSYQMELAQAALQDKNCIIVAPTGSGKTHVAMKIIQNHREKRRRLNIPK-VAFLVEQSAL 563

Query: 106  VHQQYDVIRVHTDFEVEEYYGAKGVDE--WDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
              QQ  V + +   +V+   G K   E      CW   I K DVLV+T QIL++AL    
Sbjct: 564  AEQQGKVCKEYLGCKVKVITGEKQRTESLQSLSCW---IQKKDVLVITAQILVNALATGD 620

Query: 164  LSLDIVCFIVIDECHHATGNHPYTKIMKEFY-----HKSDNKPKVFGMTASPVVRKGVSS 218
            + ++    IV DECHH+   HPY +IM  +       K    P++ G+TAS  V K  + 
Sbjct: 621  IQIEAFSLIVFDECHHSHAKHPYNQIMAYYLDLKLEDKHKQLPQIVGLTASVGVGKAKNE 680

Query: 219  --AMDCEGQISELESTLDSQVFTI--EDKTEM--EVFVPSA------------------- 253
              AMD    I  + + +D++   +  E+K E+   V +P                     
Sbjct: 681  EKAMDW---IFSMMANMDAEELCVVEENKAELAQHVNIPDQDVVKTNSRKKNDFGRIIDG 737

Query: 254  --KESCRFYDQSKFC-----GSDLKGKLEVSWSKFDASLSKL--QGSQLNCYKDMDDKHK 304
              K   R+ +QS         S LK   E    ++   LS+L  +G+++     +D+K +
Sbjct: 738  IMKAIHRWMNQSIHARALTDQSVLKPPAECGNDQYTQWLSRLWKEGAKI-----VDEKAR 792

Query: 305  TL----RKQLSDYH-AKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359
                  R  L  Y+ A I+Y         A+      ++  LK  +E +I   +  + + 
Sbjct: 793  RFIHSCRVNLDMYNKALIIYTDARTSDSLAF------IKDELKRWDEHQIPDDTDRKLRS 846

Query: 360  FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCI 418
            F E+                   G   +  +D  + + KL EL +L L +FG       I
Sbjct: 847  FFEKTQ-----------------GRLQTYTMDPDHNNPKLMELRRLILQAFGNDADSRGI 889

Query: 419  IFVERIIAAKVVERFVKKVPFLTHLTVAYLTGST--TSVDALTPKVQKEVLESFRGGKVN 476
            IFV      K + R++ +   L HL     TG+   +S   +T   Q + L  F+ G+  
Sbjct: 890  IFVRTRDLVKAIHRWMMETDDLRHLKPVMFTGAQAKSSAGGMTKVQQIDALSLFKEGRHK 949

Query: 477  LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
            ++ AT V EEG+ +  C+ VIR+       + +Q+RGR R+ N ++ ++ E+G+     +
Sbjct: 950  IVIATSVAEEGLDIQKCNLVIRYSYVSNEIAMVQARGRGRRENGKYFVVAEQGDKTAERE 1009

Query: 537  LFDIIR 542
              +IIR
Sbjct: 1010 ELNIIR 1015


>gi|340514590|gb|EGR44851.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1416

 Score =  136 bits (343), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/206 (38%), Positives = 120/206 (58%), Gaps = 9/206 (4%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFK-KLIIFLAP 101
           PR YQ+ ++E AK+ NTI VL+TG+GKT+IA +L++ I Q     +++G K +   FL  
Sbjct: 2   PREYQVDLYERAKQENTIVVLDTGSGKTLIAALLMRHILQRELQYRADGHKHQYAFFLVE 61

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
            V L  QQ+ V+  + +F + ++YG         + W K+  ++   V T QILLD L  
Sbjct: 62  KVALCFQQHAVLTCNLEFPIGKFYGEMTGIIRTQEYWDKQFAEHMAFVCTAQILLDLLAC 121

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN-KPKVFGMTASPVVRKGVSSAM 220
            F+S+  +  IV DE HHA  +HPY +I+K+ Y ++ N +P++ GMTASPV     +   
Sbjct: 122 GFISMSQINLIVFDEAHHAKKSHPYARIIKDHYLRAGNERPRILGMTASPV----DALTR 177

Query: 221 DCEGQISELESTLDSQVFTIEDKTEM 246
           D     +ELES L S++ TI D   M
Sbjct: 178 DVRYAAAELESMLCSKIATITDDAMM 203



 Score =  130 bits (327), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 148/287 (51%), Gaps = 20/287 (6%)

Query: 399 LHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGS---TTS 454
           LHE+L+   +F K     CI+FV+ R  A  + + F +    +  +TV Y+ GS   ++S
Sbjct: 332 LHEVLED--AFCKRQTKRCIVFVQARSTAFILADLFQQPGMLIPGMTVGYMIGSQSTSSS 389

Query: 455 VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
              ++ + Q   L+ FR G+ N LFAT V EEG+ VP C  ++RFDL  +   YIQS+GR
Sbjct: 390 AAYMSYREQIVSLQKFRYGETNCLFATSVAEEGIDVPECDVIVRFDLYSSAIQYIQSKGR 449

Query: 515 ARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD--TALSRD---------PEACFLKA 563
           ARQ +S +I M+E GNL    KL   +R   ++    +AL  D         PE   L +
Sbjct: 450 ARQKSSLYISMMEEGNLDHMRKLRRAVRDAHALRQFCSALPEDRKVQDFVITPE--LLVS 507

Query: 564 CTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPI-FKYKSAEEAYECEL 622
                 K++ +  TGA +T  +S++++ ++    P++      P+ +   +  + +   +
Sbjct: 508 HEQATQKTFAIAETGAQLTFITSLDVLAKFASSFPNEAEDGIMPLEYIVNTVGKKFIARV 567

Query: 623 TLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPS 669
            LP  +P +TI G   ++K L++     EAC +L Q   +  +L P+
Sbjct: 568 VLPEGSPIKTITGEAQQSKQLARCSAAFEACVRLIQKKYITGNLQPA 614



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 154/439 (35%), Gaps = 132/439 (30%)

Query: 1019 ISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSME 1078
            I  V    +LP VM R++S+++A +      C      I S L LEA+T     +SF+ E
Sbjct: 899  IDAVAMALVLPVVMYRVDSVLIAQE-----ACSLVGLTIRSDLALEAVTK----DSFNTE 949

Query: 1079 ------------------RLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
                              RLE LGD+ LK A +  +F  +P   E +    R   +CN  
Sbjct: 950  EHGEHQVDFQPGMGRNYERLEFLGDTFLKMATTISVFTLFPTADEFEYHVTRMVMLCNQN 1009

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L K   ++ +  YIR  AFD R W  P  ++L+                GK    ++K  
Sbjct: 1010 LFKHAVEKGMPAYIRTKAFDRRTWY-PSNMTLK---------------RGKAAKTESK-- 1051

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG--------------------------- 1213
                       +  K+IAD  EALIGA Y+                              
Sbjct: 1052 ---------HCLSHKSIADVCEALIGAAYMSSSPGDMDMAVKAVAAMVCSINHTMTSYKD 1102

Query: 1214 LIAALYMMKWLGIDADLEVSLVDDCI-------------TRASLR--SYVPRINEIKDIE 1258
              A     KW    A     L  D +              R++ R  SYV   N I+D +
Sbjct: 1103 YFATFTAPKWYSQQATAAQRLTVDKVAEITGYRFKAAPLARSAFRHPSYVFE-NNIRDYQ 1161

Query: 1259 S------------------KIGYEFTVKFLLQEAITHASVQEFYCY---QNLYKHLQHCS 1297
                               K   E   K+L +      S Q   C      L+KH+   +
Sbjct: 1162 RLEFLGDGLLDMAIVDFLFKRFPEADPKWLTEHKTAMVSNQFLGCLCVKLGLHKHILLAT 1221

Query: 1298 TLLLSQITEYVKSFPKPGETTDSGPSMKA--------------PKALGDLLESIVGAVLI 1343
            + LL  I  Y     +  ET       +A              PK L D++E++VGA+ +
Sbjct: 1222 SSLLGDIGRYAAQLEQAEETARQTLRAEAESIPQNFWVDVPQPPKVLADVVEALVGAMFV 1281

Query: 1344 DTKLNLDEVWRIFKPILSP 1362
            D++ +   V   F   + P
Sbjct: 1282 DSEYSFSVVLDFFTKFIQP 1300


>gi|429848709|gb|ELA24159.1| RNase3 domain protein [Colletotrichum gloeosporioides Nara gc5]
          Length = 1561

 Score =  136 bits (342), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 13/230 (5%)

Query: 39  TNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA----IKSNGFKK 94
           T  I   PR YQ+++FE AK RN IAVL+TG+GKT+IA +L++ + Q       +   ++
Sbjct: 131 TKQIIGAPREYQIELFERAKMRNIIAVLDTGSGKTLIAALLLQHVLQNEVEDRAAGKPRR 190

Query: 95  LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
           +  FL   V LV QQ+ V+  +    V  + G      W  + W ++  +N V+V T  I
Sbjct: 191 IAFFLVDKVSLVFQQHAVLECNLGHSVARFCGDMLDSMWSHEFWAQQFEENKVVVCTAAI 250

Query: 155 LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS---DNKPKVFGMTASPV 211
           L   L  +++ +D +  ++ DE HH   +HPY +I+K++Y K    + +PK+FGMTASP 
Sbjct: 251 LQKCLAHSYIRMDQINLLIFDEAHHTKKDHPYARIIKDYYIKEPDMEKRPKIFGMTASP- 309

Query: 212 VRKGVSSAMDCEGQISELESTLDSQVFTI-EDKTEMEVFVPSAKESCRFY 260
               V +  D +   + LE  L S++ TI ED T ++    +  E   FY
Sbjct: 310 ----VDAQTDVKIAAARLEGLLHSEIATIPEDSTSLKAHARNIMEKDVFY 355



 Score =  130 bits (326), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 152/298 (51%), Gaps = 16/298 (5%)

Query: 385 DYSKAV-DLGYISTKLHELLQ-LFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLT 441
           D+S+ +  L ++STK+  L + L   F K T   CI+FV+ R+ A  + + F ++   L 
Sbjct: 447 DFSEVLPTLDHLSTKVLRLWEELQARFSKPTDHKCIVFVDMRLTALLLTDLFRQEATKLP 506

Query: 442 HLTVAYLTGSTTSVDALTPKVQKEVL--ESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
            L   +L GS     A     +++VL    FR GKVN LFAT V EEG+ +P+CS VIRF
Sbjct: 507 FLNAEFLIGSRPDSGAANMSFKEQVLTISKFRHGKVNCLFATQVAEEGIDIPDCSIVIRF 566

Query: 500 DLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF----DIIRSERSVT----DTA 551
           DL ++   YIQS+GRAR+  S+++  +E GN +    +     D +   R  T    D  
Sbjct: 567 DLYRSAIQYIQSKGRARRAESEYLTFIEGGNGRHTRTVAQAQCDQVTMRRFCTALPEDKK 626

Query: 552 LSR-DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK 610
           +S  D  A FL      + K+Y++ STGA++T  SS+ ++  +   L         P + 
Sbjct: 627 ISGVDMTALFLHG--EAQKKTYVIASTGATLTWMSSLEVLSNFTSSLRQSNDEVLAPEYV 684

Query: 611 YKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
             +  + +  E+ LP  +P QT+ G     K  ++     E C++L +   ++D L P
Sbjct: 685 VVNEGQKFLAEVQLPPRSPIQTMAGNPHSTKQDARCSAAFEMCKELIKKKYIDDRLRP 742



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 158/439 (35%), Gaps = 122/439 (27%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +PI  V   +  P+++ R++S+M+A        C   N  I   L LEA+T         
Sbjct: 1035 LPIETVVLAFAFPAIIHRMDSVMIALDA-----CKHLNLTIRPDLALEAMTKDSDNNDEH 1089

Query: 1068 -----TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
                         + ERLE LGD  LK A +  +F + P   E Q   +R   +CN  L 
Sbjct: 1090 DQEKINFQSGMGKNYERLEFLGDCFLKMATTIAIFTSKPDDDEFQYHVQRMLLICNQNLF 1149

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
                DR LQ Y+R  +FD R W   G   +R                GK          G
Sbjct: 1150 NKAVDRGLQEYVRSQSFDRRSWYPQGLKLMR----------------GK---------QG 1184

Query: 1183 KPCDMGHRWMGSKTIADCAEALIGAYYV----GGGLIAALYMMKWLGIDADLEVSLVDDC 1238
            +P +     +  K+IAD  EALIGA Y+          A+  +  +  +    ++   D 
Sbjct: 1185 QPAN--KHALADKSIADVCEALIGAAYLSYADSDNYDMAIRAVTAMVKEKTHRMTSWGDY 1242

Query: 1239 IT-----RASLRSYVPRINEI-KDIESKIGYEFTVKFLLQEAITHASVQEFY----CYQN 1288
            +          R   P   ++ + +E  +GY+F    LL+ A  H S    Y     YQ 
Sbjct: 1243 VAGYRHPEWQFRKPTPIQRDMAQQVEESMGYKFKSPALLRSAFHHPSYPRAYESLPDYQR 1302

Query: 1289 L--------------------------------------------------YKHLQHCST 1298
            L                                                  +KH+   ++
Sbjct: 1303 LEFLGDALLDMVCVDFLFNKFPNADPQWLTEHKMAMVSNQFLASLSVKLGLHKHILVGTS 1362

Query: 1299 LLLSQITEYVKSFPKPGETTDSGPS------------MKAPKALGDLLESIVGAVLIDTK 1346
             +LSQ  EYV S        +SG                +PK L D+LE+ VGAV +D+ 
Sbjct: 1363 AMLSQKEEYVSSLNLAMAEAESGAESGMFSQDYWINVKHSPKYLSDVLEAYVGAVFVDSG 1422

Query: 1347 LNLDEVWRIFKPILSPIVT 1365
             + +EV + F   + P  T
Sbjct: 1423 YDYNEVRKFFDKHIRPFFT 1441


>gi|380026731|ref|XP_003697097.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Apis
           florea]
          Length = 1362

 Score =  135 bits (339), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 122/206 (59%), Gaps = 8/206 (3%)

Query: 40  NSIN-FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLI 96
           N++N FIPR YQ+++FE+A ++N I  L TGAGKT IAVMLIK+++  I+ +  +  K  
Sbjct: 3   NNVNEFIPRTYQIELFEIACKQNVIIYLPTGAGKTFIAVMLIKELSADIRKSYDEGGKHT 62

Query: 97  IFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
           +F+  TV LV QQ + I   T        G  G+D W +  W  ++ ++ VLVMT QIL+
Sbjct: 63  VFIVNTVPLVMQQSEYITRLTGLSCAALSGDIGIDVWTNTEWNAQLKEHKVLVMTSQILI 122

Query: 157 DALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF--YHKSDNKPKVFGMTASPVVRK 214
           DAL   ++ L+ +  I+ DECH A  +HP  +IM+ F  Y K D +PKV G++A+ ++  
Sbjct: 123 DALCHGYIFLNRINLIIFDECHRAVNDHPMRQIMQYFENYSKED-QPKVLGLSAT-LLNS 180

Query: 215 GVSSAMDCEGQISELESTLDSQVFTI 240
            V         I  LE T  ++V TI
Sbjct: 181 NVKLE-KIHSVIESLEITFHAKVVTI 205



 Score =  105 bits (263), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 116/218 (53%), Gaps = 19/218 (8%)

Query: 411 KSTQVLCIIFVERIIAAKVVERFVKKVPF----LTHLTVAYLTGSTTSV------DALTP 460
           K  +  CIIFV+R   AK++ + +K +         L   +L G +              
Sbjct: 288 KDQEFCCIIFVKRRFTAKLLYQILKNISKNNEEYRFLHPEFLIGFSNDPYRNCKESLCIS 347

Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
           K  KE L  F+ G  N + ATD+++EG+++P CS +IR+DLP  V +YIQS+GRAR  +S
Sbjct: 348 KWNKEALHRFKNGLSNCIVATDILDEGVNIPKCSLIIRYDLPMDVRTYIQSKGRARHVHS 407

Query: 521 QFILMLERGNLKQRNKLFDIIRSERSVTDTALSRD-----PEACFLKACTYV-KTKSYIV 574
           Q+IL+L++GNL+  ++  +  R E+ + +  L++      P    ++   Y  K + Y+V
Sbjct: 408 QYILLLDKGNLRFISRYNEFKRIEQYLQELLLNKTNERNVPTENKIQNELYQHKIQPYVV 467

Query: 575 ---ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIF 609
              E     +T  ++++LI++YC  L   K+    PI+
Sbjct: 468 ISNEGQKCCITEQTAIHLINKYCMSLMKSKFACLSPIW 505



 Score = 94.0 bits (232), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 124/264 (46%), Gaps = 39/264 (14%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            ++ ALTT    ++F++ERLE LGDS LK+ +S  L+  +PK  EG L+  +   + N  L
Sbjct: 937  VMYALTTKLGNDAFNLERLETLGDSYLKFIISLFLYNQFPKYAEGSLTTIKGKIIGNRNL 996

Query: 1122 HKLGTDRKLQGYIRDSAFDP-RRWVAPGQLSLRP---VPCECGVD-----TLEVPLDGKF 1172
            +  G  + + G ++  +F P   ++AP     R    V  E  V       +++    +F
Sbjct: 997  YYCGIXKNIPGRMKVDSFVPLSNFIAPAYTVFRQLQDVLLEAKVSPTVLYEIQISQQEQF 1056

Query: 1173 ---FTQDTKVVV--------------GKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLI 1215
                T+ TK ++              G    +G + +  K +ADC EALIG Y    G+ 
Sbjct: 1057 SGLMTETTKNLIQQKVLNWELAESQTGMEHYLGIQTVSDKAVADCVEALIGVYLRNMGIK 1116

Query: 1216 AALYMMKWLGI---DADLEVSLV----DDCITRASLRSYVPRINEIKDIESKIGYEFTVK 1268
              L ++KW  I   + D    L     +  I++  + S +P  +E   IE+K+GY+F  +
Sbjct: 1117 DTLTLLKWFQILPNEIDSNTLLFGTSENPIISKGDINSLMPWASE---IETKLGYKFKNR 1173

Query: 1269 FLLQEAITHASVQEFY---CYQNL 1289
              L +A TH S    +   CYQ L
Sbjct: 1174 GYLLQAFTHPSYSANHMTECYQRL 1197



 Score = 44.7 bits (104), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query: 921  YSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV 980
            Y + ++ ++ +  S F     D+  ++ +Y+ EK+G+ + +  QP+L +K         +
Sbjct: 698  YIVTQVCDDITPNSCFPT---DNFLSYAHYYKEKHGLTIKNLKQPMLEVKAISRT----I 750

Query: 981  NFNDGGGSGKGSKSGMNTKKPQ-MHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLM 1039
            N+         SK+      P+ M  H+ PEL  +++ P        +LPS++ R+  L+
Sbjct: 751  NYILPRHMQSESKNRRYVDLPKNMKEHLVPELCTKINFPALYWLKATILPSILHRISQLL 810

Query: 1040 LASQLREEI 1048
            +A  LR  I
Sbjct: 811  VAEDLRYTI 819



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIE 1379
             PK LGD+ ESI+GA+ +D+  NL  VW I   I+   +      +P  P+R L E
Sbjct: 1298 VPKVLGDIFESIIGAIYLDSNKNLMVVWEIIYSIMHKEIDEFSKNIPKQPIRILYE 1353


>gi|322702026|gb|EFY93774.1| Dicer-like protein 1 [Metarhizium acridum CQMa 102]
          Length = 1524

 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 121/204 (59%), Gaps = 17/204 (8%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA--QAIKSNGFKKLIIFLAPTV 103
           PR YQL +FE AK++NTI VL+TG+GKT IAV+L++ +   +  K    K+   FL   V
Sbjct: 122 PRQYQLDLFERAKQQNTIIVLDTGSGKTYIAVLLLRHVLALELEKQQQTKRTAFFLVDKV 181

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            L  QQ+  ++ + ++ V ++YG    D+   + W  EI +N V+V T QILLD L    
Sbjct: 182 ALCLQQHRFLQANLEYPVGKFYG----DKASMREWASEIQENMVIVCTAQILLDLLSSGL 237

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-SDNKPKVFGMTASPV---VRKGVSSA 219
           + ++ V  +V DE HH   NHPY  IM++ Y +   ++P++ GMTASPV    R   ++A
Sbjct: 238 VKMNQVNLLVFDEAHHTKKNHPYASIMRDHYIRMKADRPRILGMTASPVDSKTRDFYAAA 297

Query: 220 MDCEGQISELESTLDSQVFTIEDK 243
           +D       LE+TL S++ T+ ++
Sbjct: 298 LD-------LEATLCSKIATVSEE 314



 Score =  114 bits (285), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 138/270 (51%), Gaps = 15/270 (5%)

Query: 399 LHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGS---TTS 454
           LHE+L       + T+  CI+FV+ R IA  + E F   V  +  +   ++ GS   ++S
Sbjct: 455 LHEVLHDVFECQQGTR--CIVFVQKRYIAFLLSEAFNLSVLRVPDMAAGFVVGSQPASSS 512

Query: 455 VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
           +  ++ K Q E L+ FR G+ N +FAT V EEG+ +P C  +IRFDL  +   YIQS+GR
Sbjct: 513 IVNMSIKDQTEALDRFRYGETNCIFATQVAEEGIDIPECDLIIRFDLYDSAIQYIQSKGR 572

Query: 515 ARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD--TALSRD---PEACFLKACTYVKT 569
           ARQ +S +I M+ER N+  R +L    R   ++    ++L  D    EA        ++ 
Sbjct: 573 ARQVHSVYINMVERDNIHHRRRLMQAARDVHALRRFCSSLPSDRKIDEAEIDDGLLKLRV 632

Query: 570 KSYI---VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPS 626
           KS I   V  TGA +T DSS  ++ ++   +       P+ I    +  + +   + LP 
Sbjct: 633 KSQISFEVPQTGARLTFDSSRGVLAKFVSSVCGGADAHPEYIVTPTNTGK-FTAIVLLPD 691

Query: 627 NAPFQTIVGPTSRNKNLSKQLVCLEACEKL 656
           + P ++  G   R+K L++     +AC +L
Sbjct: 692 SCPIKSSSGTPQRSKLLARGSAAFKACIEL 721



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 159/419 (37%), Gaps = 105/419 (25%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTT----LGCC 1072
            +P+ VV +   LP  +  +ES  +A        C   +  I   L LEALT     +   
Sbjct: 1028 LPVDVVVTALALPVTIYSIESAAIAMDA-----CGLIDLAIYPPLALEALTKSEEDVDVQ 1082

Query: 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQG 1132
             + + ERLE LGD+ LK A +  LF   P K+E +    R   +CN  L     DR LQ 
Sbjct: 1083 SNKNYERLEFLGDAFLKMATTISLFTLIPNKNEFEYHVERMILICNKNLFNHAVDRGLQE 1142

Query: 1133 YIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWM 1192
            Y+R   FD R W     L LR                        K    KP  + HR +
Sbjct: 1143 YVRSRGFDRRSWYP--DLVLR------------------------KGKKHKPVALTHR-L 1175

Query: 1193 GSKTIADCAEALIGAYYVG--GGLIAALYMMKWLGIDADLEVSLVDDC---ITRASLRSY 1247
              K+IAD  EALIGA Y+    G+  A+  +  +    +  ++   D      + + ++ 
Sbjct: 1176 ADKSIADVCEALIGAAYMTEPEGMNLAVKAVTKMVQSRNHRMTKYSDYYEGYVQQAWQTI 1235

Query: 1248 VPRINEI---KDIESKIGYEFTVKFLLQEAITHASV---QEFYCYQNL------------ 1289
             PR  E+     +E  IGY+F    LL+ A  H S     E   YQ L            
Sbjct: 1236 PPRPIEVLAADKVEGSIGYKFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAI 1295

Query: 1290 --------------------------------------YKHLQHCSTLLLSQITEYVKSF 1311
                                                  ++H+    + ++  I  +V+  
Sbjct: 1296 VDFLFRRYPLADPQWLTEHKMAMASNHFFSFLCVELGLHRHILSTGSSMMGHIAGFVEQI 1355

Query: 1312 PKPGETTDSG--------PSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSP 1362
             K    T+ G         +   PKAL D+LE++VGA+  D+K + + V   F   ++P
Sbjct: 1356 EKAKLQTEDGVLQLDFWLNTEHPPKALSDILEAVVGAMYEDSKYDYNSVRDFFTKFIAP 1414


>gi|156553056|ref|XP_001605287.1| PREDICTED: endoribonuclease Dcr-1 [Nasonia vitripennis]
          Length = 1917

 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 173/685 (25%), Positives = 295/685 (43%), Gaps = 97/685 (14%)

Query: 415  VLC-IIFVERIIAAKVVERFVK---KVPFLTHLTVAYLTGSTTSVD-------ALTPKVQ 463
            +LC +IFV+  + AKV+   +    K     H      T   ++ +        L  + Q
Sbjct: 426  LLCGVIFVDDAVTAKVLFYLLNEMSKCEESLHFLSPLFTSEKSNDELFCGRDLELEYRKQ 485

Query: 464  KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
            +EVL+ FR  + NLL +T ++EEG+ +P C++V+RF+ PK   SY+Q + RAR  ++  +
Sbjct: 486  EEVLKKFRIHECNLLISTAILEEGIDIPKCNFVMRFEFPKNYQSYVQCKSRARATDALHV 545

Query: 524  LM---LERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC-FLKACTY---VKTKSYIVES 576
            L+   +E     QR   +  I  E+ +     S++ + C   +A  Y   +     + E 
Sbjct: 546  LLVPEIESEVYIQRLAHYHYI--EKILLSKCTSKEADECEETEADAYDSVLPEYKPLDEE 603

Query: 577  TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA----EEAYECELTLPSNAPFQ- 631
                VT +S+++L++RYC  LPSD +    P +K  +     ++ Y C L LP N+P + 
Sbjct: 604  DAPKVTLNSAISLVNRYCAKLPSDTFTKLTPEWKINNITVENKQMYICSLRLPINSPLKY 663

Query: 632  TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE-----PSENN---LISKKN 683
            +I      NK L+K++  L+ C  LH+   ++D+LLP  +E     P ++    L   +N
Sbjct: 664  SISSYPMPNKALAKRMAALQMCVCLHKENEIDDYLLPVGKENFKAHPEDSEVPALPDDEN 723

Query: 684  ESLPGA--GTTKRKELHGTTPIRAL---SGRWGEKCGVILHAYKFNFACSIVTEIYSGFV 738
              L  A  GTTKR++ +      AL        E C   L+      +C +  E  +   
Sbjct: 724  MDLTEARPGTTKRRQYYYKKIADALIDCKPELEEPC--YLYHINMVLSCPLPEEQNTRGR 781

Query: 739  LLIESELDNDVGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAKCFQELFFNGLFGK 797
             +   E ++D+G   L    + K     + + SG+V +D  ++SK               
Sbjct: 782  KIYPPE-ESDIGFGILTRKKIPKVCPFPIYTRSGEVRVDL-KLSKETV------------ 827

Query: 798  LFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVV- 856
            +  +SK      F     TN L    Y+ L  P        + S+ I      P AS + 
Sbjct: 828  VLDESKIDKVVSFLNYTFTNVLRLQKYLMLFDP-----NVSENSYIIVPVKKQPNASDIC 882

Query: 857  ---EFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVL 913
               +F+         +C     +S P R S            +  N   +A    D V++
Sbjct: 883  VDWDFV---------ECIYANRDSMPNRISE----------ENRQNFVFEASKYHDAVIM 923

Query: 914  AIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRL 969
              +      + + + EI N+ + +S F G    D  TF  Y+S+KYGI + +  QPLL +
Sbjct: 924  PWYRNQDQPQYFYVAEICNHLNPKSSFPGA---DYSTFEEYYSKKYGIQIQNLEQPLLDV 980

Query: 970  KQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVK 1023
              +    N L     N  G     S + +K        Q  + +  EL      P S+ +
Sbjct: 981  DHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LIAELCAIHPFPASLWR 1039

Query: 1024 SLYLLPSVMQRLESLMLASQLREEI 1048
                LP ++ R+ +L+LA Q+R  +
Sbjct: 1040 QAVCLPCILYRINALLLADQIRRHV 1064



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 150/397 (37%), Gaps = 105/397 (26%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            SLIL+ALT     +  ++ERLE +GDS LKYA++ +LF TY   HEG+LS  RS  V N 
Sbjct: 1377 SLILQALTMSNANDGINLERLETIGDSFLKYAITTYLFCTYNNIHEGKLSHLRSKQVSNL 1436

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL---SLRPVPCECGV-----DTLEVPLDG 1170
             L++LG  + L   +  S F+P   W+ P       L     E GV     +  ++P   
Sbjct: 1437 NLYRLGRQKMLGESMIASKFEPHDNWLPPCYYVPKELEQALIESGVPSAMWNQADIPPFS 1496

Query: 1171 KFFTQDTKV---------------------------VVGKPCD-------MGHRWMGSKT 1196
            +F   +  V                           + G P         +    +  K+
Sbjct: 1497 RFSEINDLVRETEHKLEIIKSELSQSEHGALNGLNGLTGDPLRSFIPYNLITQHSIPDKS 1556

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGIDA--DLEVSLVDDCITRASLRSYVPRIN-- 1252
            IADC EALIGAY +  G   AL  M WLGI      EV  + D      L    P +   
Sbjct: 1557 IADCVEALIGAYLIACGPRGALLFMSWLGIHVLPTEEVVTISDSKPTDRLPGSTPYVELG 1616

Query: 1253 ------------------------------EIK---------DIESKIGYEFTVKFLLQE 1273
                                          EI+          +E  IGY F  +  L +
Sbjct: 1617 EEGGSTKWTQLRYKKLQEPPSPLFYNVPQPEIELEIMLDGYDSLERSIGYTFRNRSYLLQ 1676

Query: 1274 AITHASVQEFY---CYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKAL 1330
            A THAS Q      CYQ L          L   + +Y+ +           P   +P AL
Sbjct: 1677 AFTHASYQPNRLTDCYQRL--------EFLGDAVLDYLIT-----RHLYEDPRQHSPGAL 1723

Query: 1331 GDLLESIVGAVL---IDTKLNLDEVWRIFKPILSPIV 1364
             DL  ++V   +   +  +    + +R   P L+ ++
Sbjct: 1724 TDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLNTVI 1760



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKALGD+ ES+ GA+ +D+ ++LD VW ++  I+   +      +P  P+REL+EL    
Sbjct: 1798 PKALGDVFESLAGAIYLDSNMSLDAVWAVYFEIMKSEIEQFSANVPKSPIRELLELEPET 1857

Query: 1385 GYFVKENCTLKGEMV 1399
              F K      G  V
Sbjct: 1858 AKFGKPEKLADGRRV 1872



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 17/218 (7%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA----QAIKSNGFKKLIIF 98
           +F PR +Q+++   AK +N I  L     +T I   +I+++A    + +  +G  K  I+
Sbjct: 13  SFTPREHQVELLYSAKEKNIIICLGKITEQTFIVTKVIQELAINNRRTLSHDG--KRTIY 70

Query: 99  LAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLD 157
           L        ++ + I+  TD +V        V ++DS    KE + N  VL++T  +   
Sbjct: 71  LLENEEACTEKANHIKQLTDLKV---LKCNDVKDFDS----KEFSSNTQVLILTVDMCSK 123

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVS 217
            L    ++ + +  ++ID+CH+   N   +KI+   +   D+  K+ G            
Sbjct: 124 LLLANKINPNQINLLIIDKCHNLVTNCKLSKILN-IFRNCDSTTKIIGFAVPLYSLTKEP 182

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE 255
            A+  E  I  +ES L  Q+ T  D   +  + P  KE
Sbjct: 183 GALSYE--IERIESLLQCQIETASDLLSILRYSPKPKE 218


>gi|241061228|ref|XP_002408100.1| dicer-1, putative [Ixodes scapularis]
 gi|215492369|gb|EEC02010.1| dicer-1, putative [Ixodes scapularis]
          Length = 2050

 Score =  134 bits (337), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 169/342 (49%), Gaps = 59/342 (17%)

Query: 415 VLC-IIFVERIIAA--------KVVERFVKKVPFLTHLTVAYLTGSTT------------ 453
            LC I+FV + I A        +V  RF ++  F+T     +L G +T            
Sbjct: 537 ALCGIVFVRQRITAYILSLWLSEVAARFPEEYGFITP---NFLVGRSTPPPVAPGGRGRA 593

Query: 454 -----SVDALTP---KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTV 505
                +  ALTP   + Q+EVL+ FR  + NLL AT V+EEG+ VP C+ V+RFD P+ +
Sbjct: 594 GGDVVAALALTPLGLQRQEEVLQKFRARECNLLVATSVVEEGIEVPRCNLVVRFDPPENL 653

Query: 506 SSYIQSRGRARQHNSQFILMLER-------GNLKQRNKLFDIIRSERSVTDTALSRDPEA 558
            +Y+ S+G+A+  +S++ +++ R        +L        I+     V DT L  + + 
Sbjct: 654 RAYMLSKGKAKAAHSRYFVLVPREESARFLEDLHDHRTTEQILLERSHVEDTTLDEEVDP 713

Query: 559 CFLKACTYVKTKSYIVESTGA-SVTTDSSVNLIHRYCEMLPSDKY--YTPKPIFKYKSAE 615
            F  +   +K     +E+  A  V+  +++ L++RYC  LPSD +   TP       + E
Sbjct: 714 AFADS---LKPPYKPLEAEDAPKVSMSTAIALVNRYCAKLPSDTFTRLTPTSSMTEVNVE 770

Query: 616 -----EAYECELTLPSNAPFQT-IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPS 669
                  Y C L LP N+P +  IVG     K L+KQ V L+ CE+LH++G L+D+L+P 
Sbjct: 771 GDRDTTLYRCSLHLPINSPLKRCIVGDPMPGKLLAKQAVALKTCEELHKMGELDDNLVPQ 830

Query: 670 VEEPSENNLISK-----KNESLPGA---GTTKRKELHGTTPI 703
            +E     L        + E  PGA   GTTKR++ +   P+
Sbjct: 831 GKEAMRLALDQSAGRFPEEELQPGAPRPGTTKRRQYYDKKPL 872



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 6/106 (5%)

Query: 1045 REEINCHSRNFHIPS-SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKK 1103
            R +++ HS     PS S++L+ALT     +  ++ERLE +GDS LKYAV+ HL+ T+P  
Sbjct: 1539 RPDLSSHSG----PSPSILLQALTMSNANDGINLERLETVGDSFLKYAVTAHLYCTHPSV 1594

Query: 1104 HEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            HEG+LS  RS  + N  L++LG  R+L G +  + F+P   W+ PG
Sbjct: 1595 HEGKLSHLRSRQISNLNLYRLGRARRLGGLMVATKFEPSDNWLPPG 1640



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 8/114 (7%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKALGD+ ES+ GA+ +D+ ++LD VWR++  ++ P +      +P  P+REL+EL    
Sbjct: 1932 PKALGDIFESVAGAIFLDSNMSLDTVWRVYYAMMKPEIEYFSTHVPKSPIRELLELEPQT 1991

Query: 1385 GYFVKENCTLKGEMVHAELRLQL-KDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
              F +   TL G++    +R+++      VG G  R+++ AK  AA + L+ L+
Sbjct: 1992 AKFERAEMTLNGKV---RIRVEVFGKGRFVGVG--RNKRIAKCTAAKRALRALK 2040



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 67/153 (43%), Gaps = 38/153 (24%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDA-------------------DLEVSLV 1235
            K+IADC EALIGAY V  G  A L  M WLG++                     LE  LV
Sbjct: 1720 KSIADCVEALIGAYLVSCGPRATLLFMSWLGLEVLPRDRTAEALRDVSAPLYRTLESPLV 1779

Query: 1236 --DDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNL---Y 1290
              DD    A L      ++     E++IGY F  +  L +A THAS    Y Y  L   Y
Sbjct: 1780 SPDDGSALAQL------LSGYDAFEARIGYRFRDRAYLLQAFTHAS----YHYNRLTDCY 1829

Query: 1291 KHLQHCSTLLLSQ-ITEYVKSFPK---PGETTD 1319
            + L+     +L   IT ++   P+   PG  TD
Sbjct: 1830 QRLEFLGDAVLDYLITRHLYDDPQRHSPGTLTD 1862



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 141/304 (46%), Gaps = 26/304 (8%)

Query: 50  QLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN---GFKKLIIFLAPTVHLV 106
           ++++ + AK +N+I  L +G  KT + VML+K++A  ++ +   G K++++ L P+    
Sbjct: 35  EVELLDTAKGQNSIVFLSSG--KTFMVVMLVKELAYQVRRDVESGGKRVLV-LVPSAESG 91

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS- 165
            +   ++  +TD +   ++ A      +   + K+  ++ VLV+TP+       +A    
Sbjct: 92  TRHQKMMEDYTDLK-SAFFSAPD----NRTDFPKQFAEHHVLVLTPEAFAHHFVEADADI 146

Query: 166 ----LDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAM 220
               +D V  +V D+CH A     Y  ++       ++ + +V G+     VR+      
Sbjct: 147 AETLIDAVNLVVFDDCHVALREAAYGPVLAFLLDFVAEGRMRVLGLAPPLAVRR--QRPA 204

Query: 221 DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS-DLKGKLEVSWS 279
             E +I ELE  L S   T  + T +  +    +E+   Y  + +CG+ + +  L     
Sbjct: 205 LLEAEILELEDGLQSTACTSSELTVLSKYGSRPRETVVEY--ASYCGNGEGREALGTILR 262

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339
             D +++ L   + +    + ++ +   +Q   Y  ++ Y L  LG  CA E  ++ L++
Sbjct: 263 LLDEAMAFLGEKEGH----LVERERAALRQSQRYLVELCYTLVTLGPWCAREVTELFLKE 318

Query: 340 VLKA 343
           V +A
Sbjct: 319 VSRA 322



 Score = 47.4 bits (111), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 13/145 (8%)

Query: 919  RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNL 978
            + + + EI ++ + +S F    D   +TF  Y+ EKY I ++   QPLL +  +    NL
Sbjct: 1052 QFFYVAEICHDLNPKSDF---PDAGFETFDAYYREKYDIRVVDGRQPLLDVDHTSARLNL 1108

Query: 979  LVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVM 1032
            L     N  G     S + +K        Q  + + PEL +    P S+ +    LP V+
Sbjct: 1109 LTPRYVNRKGVTLPTSSEQTKRAKRESLQQKQI-LVPELCLVHPFPASLWRKAVCLPCVL 1167

Query: 1033 QRLESLMLASQLREEINCHSRNFHI 1057
             R+ SL+LA QLR  +   +R  H+
Sbjct: 1168 YRMNSLLLAEQLRLTV---AREVHV 1189


>gi|310798327|gb|EFQ33220.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
          Length = 1532

 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 132/231 (57%), Gaps = 15/231 (6%)

Query: 21  PDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLI 80
           P++GS  H   +    +    I   PR YQ+++FE AK +NTI VL+TG+GKT+IA +L+
Sbjct: 91  PNLGSVAH---LLKQENERFRIIQTPREYQIELFERAKSKNTIVVLDTGSGKTLIAALLL 147

Query: 81  KDIAQA---IKSNGFKKLI-IFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ 136
           + I +     ++ G +K I  FL   V LV QQ+ V+  + +  V  + G    + W  +
Sbjct: 148 RHILEKEIEDRATGQQKRIAFFLVDKVSLVFQQHAVLECNLEHPVARFCGDMVDEMWSRE 207

Query: 137 CWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196
            W ++  +N V+V T  IL   L  +++ ++ +  ++ DE HH   NHPY +I+K+FY K
Sbjct: 208 FWAQKFEENMVIVCTAAILQKCLTHSYIRMEQINLLIFDEAHHTKKNHPYARIIKDFYIK 267

Query: 197 ---SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKT 244
              ++ +P++ GMTASP     V +  D +  I++LE  L S++ T+ +++
Sbjct: 268 EPDANKRPRILGMTASP-----VDAQTDIKIAIAQLECLLHSEIATVSEES 313



 Score =  120 bits (301), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 145/290 (50%), Gaps = 15/290 (5%)

Query: 392 LGYISTKLHELLQ-LFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLT 449
           L  +S K+  L + L   F    +  CI+FVE R+ A  + + F +    L++L  A L 
Sbjct: 430 LDQVSMKVLRLWEELRPRFTSEPKYRCIVFVEMRLTAVLLADLFKQNHIKLSYLNPAVLV 489

Query: 450 GST--TSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
           GS   T +  ++ K Q   +  FR  +VN LFAT V EEG+ +P+C+ ++RFDL K+V  
Sbjct: 490 GSQSDTGLANMSFKQQVLTIHRFRHAEVNCLFATQVAEEGLDIPDCNLIMRFDLYKSVIQ 549

Query: 508 YIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD--TALSRDP-------EA 558
           YIQS+GRAR+ +S++I  +E GN +Q   +      +  +     AL  D        +A
Sbjct: 550 YIQSKGRARRQDSEYISFIEGGNGRQARMVLQATYDQSVLRRFCNALPEDKKIMGFDVKA 609

Query: 559 CFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAY 618
             LK   +   KSY+++STGA +T  SS+ ++  +   L         P +   +  + +
Sbjct: 610 SILKGDLHY--KSYLIKSTGAVLTWTSSLEVLANFAASLRQSNDEVCAPEYVVINQGQTF 667

Query: 619 ECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
             E+ LP  +P   + G    NK  ++     E C++L +   ++ +L P
Sbjct: 668 VAEVQLPERSPIMHVAGFPQSNKQAARCSAAFEMCKELIKKKYIDHNLQP 717



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 119/318 (37%), Gaps = 68/318 (21%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +PI  V   +  P+++ R++++++A        C   +  I   L LEA+T         
Sbjct: 1009 LPIETVVMAFTFPAIIHRIDAVLIALDA-----CKFLDLDIRPDLALEAVTKDSDNSDEH 1063

Query: 1068 -----TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
                         + E+LE LGD  LK A +  LF   P+ +E      R   +CN  L 
Sbjct: 1064 GKNKINFQGGMGKNYEQLEFLGDCFLKMATTIALFTQNPEDNEFAYHVERMLLICNQNLF 1123

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVG 1182
                DR L  Y+R  +FD R W   G                             +++ G
Sbjct: 1124 NKAVDRSLPEYVRSKSFDRRSWYPSG----------------------------LRLIRG 1155

Query: 1183 KPCDMGHRW-MGSKTIADCAEALIGAYYVG----GGLIAALYMMKWLGIDADLEVSLVDD 1237
            K   + HR  +  K+IAD  EALIGA Y+          A+  +  +  + +  ++   D
Sbjct: 1156 KEGSLNHRHALADKSIADVCEALIGAAYLSYAETNNFDMAIRAVTAMVKNKNHLMTSWGD 1215

Query: 1238 CITRASLRSYVPRINE-----------IKDIESKIGYEFTVKFLLQEAITHASVQEFYCY 1286
              T     +Y P   +            + I+  +GYEF    LL+ A  H S    Y  
Sbjct: 1216 YYT-----AYTPSAWQSGHSTAMQKELARQIKENLGYEFKYPALLRSAFKHPSYPRAYED 1270

Query: 1287 QNLYKHLQHCSTLLLSQI 1304
               Y+ L+     LL  +
Sbjct: 1271 LPNYQRLEFLGDALLDMV 1288


>gi|221361579|emb|CAX18338.1| dicel-like 3 [Nicotiana benthamiana]
          Length = 99

 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 80/99 (80%)

Query: 1499 VVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKI 1558
            V+ PINMKKGGPR SL++LCK + WPMP+ E+TE KS++L+   EG +KR  +++F S+I
Sbjct: 1    VIGPINMKKGGPRQSLYELCKKLQWPMPSLESTERKSKSLVECGEGSDKRKVYNTFASQI 60

Query: 1559 TLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQG 1597
            +L IP++G +E  GD RADKKSS DSAAL+ML+ELERQG
Sbjct: 61   SLTIPDYGLIELTGDERADKKSSQDSAALLMLYELERQG 99


>gi|148829108|gb|ABR14013.1| Dicer-1 [Penaeus monodon]
          Length = 2473

 Score =  134 bits (336), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 172/692 (24%), Positives = 287/692 (41%), Gaps = 124/692 (17%)

Query: 415  VLCIIFVERIIAAKVVERFVKKVPFL----THLTVAYLTGSTTSVDA------LTPKVQK 464
            V  +IFV     AK++ R +K++  +      +   Y   +  SV           K Q+
Sbjct: 928  VCGLIFVHHRSMAKIIYRLLKELSDIGGDFAWIFPQYTVEAKESVKEDPRAAEAEHKKQE 987

Query: 465  EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFIL 524
            EVL  FR  + N+L +T V+EEG+ VP C+ V+RFD P    SY+ S GRAR H++ +  
Sbjct: 988  EVLRRFRHHECNILVSTRVLEEGIDVPQCNLVLRFDPPTDYRSYVHSCGRARGHDTFYFH 1047

Query: 525  MLERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVEST 577
            ++ +        ++   +    ++ S     +    R+     L +        Y+  + 
Sbjct: 1048 LITKNQEISFLHDMATYSAFQQVLVSHCGSVEVGTDRE----VLSSEANAAHAPYLTPAE 1103

Query: 578  GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA------YECELTLPSNAPFQ 631
             A+VT  S++ L+++YC  LPSD +     ++  +  EEA      Y+C++ LP N+P +
Sbjct: 1104 -AAVTMASAIGLLNKYCAKLPSDTFTRLTAMWDVEEIEEAEVEIPKYKCKIMLPINSPLK 1162

Query: 632  -TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE----------PSENNLIS 680
             TI GP     +L+K    LE C +LHQ+  L+D L P  +E          P  ++ + 
Sbjct: 1163 GTIEGPWQSKVSLAKMAAALECCRRLHQMEELDDQLQPVGKESMKLDDHLCAPPADDQVP 1222

Query: 681  KKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN--FACSIVTE------ 732
               E +P  GTTKR++         L+G    K G+ L  YK +    C I  E      
Sbjct: 1223 ---EGMPRPGTTKRRQYCYKKVAVCLTGE-QPKQGLDLFVYKLDMVLTCPIPDEQNTRGR 1278

Query: 733  -IY-----SGFVLLIESELDNDVGNFELELYLVSKTVKATVSS-SGQVHLDADQMSKAKC 785
             IY     S    +I ++  + V  F   ++  S  V   V     +V++  DQ+S  + 
Sbjct: 1279 KIYRPEQSSRSFGIITTKPISQVSGF--PVFTRSGEVVVHVQEIERKVNVTQDQLSALQY 1336

Query: 786  FQELFFNGL--FGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWR 843
            F +  F  +    K  +K   + +R  F                ++PL   N    GS  
Sbjct: 1337 FHKFTFTHVLRLEKYPIKFDPTNARTAF---------------YIVPLNKFN----GSEG 1377

Query: 844  INWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVD 903
             +W          EF+KE    G              R  P +     K           
Sbjct: 1378 TDW----------EFVKEIQSEGDP------------RPVPPQDDARKK-------FQFQ 1408

Query: 904  AKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVL 959
                +D VV+  +      + + + EI  + + +S F    D   +TF  Y+  KYG+ +
Sbjct: 1409 HDLYEDAVVMPWYRNQDQPQYFYVAEICTHLNPQSDF---PDAGFETFEKYYLTKYGLQI 1465

Query: 960  IHPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLV 1013
             +  QPLL +  +    NLL   + N  G     + + +K        Q  + + PEL  
Sbjct: 1466 CNLAQPLLDVDHTSGRLNLLTPRHVNRKGVALPTTSEETKRAKRENLQQKQI-LVPELCT 1524

Query: 1014 RVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
                P S+ +    LP+++ R+ +L+LA QLR
Sbjct: 1525 IHPFPASLWRKAVCLPTILYRINALLLADQLR 1556



 Score =  127 bits (318), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 135/521 (25%), Positives = 215/521 (41%), Gaps = 145/521 (27%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++  L+ TYP++HEG+LS  RS  V N 
Sbjct: 1963 SVILQALTMSNANDGVNLERLETIGDSFLKYAITTFLYCTYPQRHEGKLSYLRSKQVSNL 2022

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVP---CECGV-----DTLEVPLDG 1170
             L++LG  + L   +  + F+P   W+ PG    R +     + GV     +  ++P   
Sbjct: 2023 NLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPRELEEALIDSGVPAGHWNMADLPGLH 2082

Query: 1171 KFFTQDTKVVVGK----------------------PCD---------MGHRWMGSKTIAD 1199
               + + + +V +                      P D         +    +  K+IAD
Sbjct: 2083 DLASDEIRRLVQERSEQIKRSKSEQATSELMATQNPHDLPIFIPYNLLTQHSIPDKSIAD 2142

Query: 1200 CAEALIGAYYVGGGLIAALYMMKWLGIDA---DLEVSL-VDDCITRASLRS------YVP 1249
            C EALIGAY    G   AL  M WLGI      LE S    + IT   L S      + P
Sbjct: 2143 CVEALIGAYLTTCGPRGALLFMSWLGIKVLPCTLESSPEASELITYGHLESPQSPLYHCP 2202

Query: 1250 RINEIKDI----------ESKIGYEFTVKFLLQEAITHASVQEFY------CYQNL---- 1289
              +  K++          E KIGY F  +  L +A THAS   +Y      CYQ L    
Sbjct: 2203 LTDTRKELDLLLSGYQVFEEKIGYTFRDRSYLLQAFTHAS---YYKNRLTDCYQRLEFLG 2259

Query: 1290 ----------------------------------------------YKHLQHCSTLLLSQ 1303
                                                          +K+ +H S  L   
Sbjct: 2260 DAVLDYLITRHLYEDKRQHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRV 2319

Query: 1304 ITEYVKSFPKPGETTDS------------GPSMKAPKALGDLLESIVGAVLIDTKLNLDE 1351
            I ++VK   + G   +                ++ PKALGD+ ES+ GA+ +D+  +LD 
Sbjct: 2320 IRDFVKMQEENGHKINEEYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDA 2379

Query: 1352 VWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKD 1409
            VW ++  ++   +      +P  P+REL+E+      F K        +V  ++R+ ++ 
Sbjct: 2380 VWSVYYTMMCREIEQFSGVVPKSPIRELLEMEPETAKFGKPE-----RLVDGKVRVSVE- 2433

Query: 1410 VLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCEKRISKG 1446
              + G+G      R+ + AK  AA + L+ L+  +   ++G
Sbjct: 2434 --IFGKGSFSGVGRNYRIAKSTAAKRALRHLKKLQMMANQG 2472



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 146/337 (43%), Gaps = 27/337 (8%)

Query: 38  STNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS---NGFKK 94
           + +S  F PR YQ+++ +   + NT++VL + + +T +  M+ +++A   +S    G  +
Sbjct: 9   NVHSTIFTPREYQVELVDACLKGNTLSVLASRSTRTFLITMVTREMAHLTRSKEQGGKGQ 68

Query: 95  LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
             +    +   + +  + I+ +T+  V  Y   + V+ W    W +   +  V++MT  +
Sbjct: 69  RTLLTGWSGPGLVRAGEAIQQNTNLAVTTYTRLEQVEGWLPSRWSQTFTEAQVIIMTVDV 128

Query: 155 LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRK 214
           L   L    L LD++  +VI + H      P  K++           ++ GMT SPV+  
Sbjct: 129 LEKGLETGLLQLDMLNLLVITDAHRVATFPPLIKVLNLC-----RGCRILGMT-SPVLSH 182

Query: 215 GVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKES---CRFYDQSKFCGSDLK 271
             S     E  ++ L+      V T  +   +  +V    E    CR  D  +    +L+
Sbjct: 183 ACSPPQ-LESFLTHLQDATSCVVDTSSEIVTVLRYVNKPVEKIVMCRDPDPDERSEVELE 241

Query: 272 GKLEVSWS-------KFDASLSKLQGSQLNCY-KDMDDKHKTLRKQLSDYHAKILYCLDE 323
            +  V  +       ++D  L ++ G +   +  D+ D +K  R+ L D+    L  L+ 
Sbjct: 242 VRRLVGEALSFLDNHRYD--LVEVYGPEYQEFCDDLPDPNKEPRQILMDF----LDVLNN 295

Query: 324 LGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYF 360
           LGL CA  A    L +V K +++    R   L C  F
Sbjct: 296 LGLWCADRAALYALVEVEKLKKKTAYDRHYLLLCMIF 332


>gi|443893959|dbj|GAC71147.1| dsRNA-specific nuclease Dicer and related ribonucleases [Pseudozyma
           antarctica T-34]
          Length = 1764

 Score =  134 bits (336), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 121/217 (55%), Gaps = 19/217 (8%)

Query: 39  TNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGF----KK 94
           T+ +  +PR YQL++ ++AK  N +  L+TG+GKT+I+V+L++ I        +    +K
Sbjct: 249 TDQLTCVPRSYQLELAQIAKSGNVLVCLDTGSGKTLISVLLLQHIHSQPAPPPYPATKRK 308

Query: 95  LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYG-----AKG-----VDEWDSQCWQKEINK 144
           +  FL   V LVHQQ  VI  ++D  V + YG      +G     VD W +  W   +  
Sbjct: 309 VSFFLVNLVPLVHQQSSVIAGNSDLAVGKLYGELKEATRGRNKLTVDNWHAPQWAALLQS 368

Query: 145 NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKV 203
           + V+V T Q  LDAL   F+ +  +  I+ DE HHA  NHP+ +IMK +    +D +PK+
Sbjct: 369 HQVIVATAQCFLDALIHGFIKMSDLNLIIFDEVHHALKNHPFFRIMKYYRLAPADQRPKI 428

Query: 204 FGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI 240
           FGMTASP+  +   S M  E     L+S +D+++ T+
Sbjct: 429 FGMTASPIFTR---SGMFHEAA-HYLQSIMDARIHTV 461



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 162/363 (44%), Gaps = 52/363 (14%)

Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLC-IIFVERIIAAKVVERFVKKVPFLTHLTVAYL 448
           +D    S KL  L++L   F       C I+FVER   A ++ + +K+ P L  +   +L
Sbjct: 641 IDASNASPKLLRLVELLQCFEPDAANFCAIVFVERRQTATLLVKLIKRAPGLGFIHPEFL 700

Query: 449 TG-----STTSVDALTPKVQKEVLESFRG-GKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
            G     +     A+    Q +VL  FR     NLL AT + EEG+ +   + VIRFDL 
Sbjct: 701 LGHDNGSAAGGAPAMDWHDQVQVLNRFRRRAPTNLLVATSIAEEGLDIQAANLVIRFDLF 760

Query: 503 KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSE--RSVTDTALSR------ 554
               S++QSRGRAR   S+FILM E GN      + +   +E  RS    A++       
Sbjct: 761 NRHISFLQSRGRARARGSRFILMAESGNADHAKVILNAFDTEARRSKWLDAITESGGDGG 820

Query: 555 DPEACFLKACTYVKTKSYI------------VESTGASVTTDSSVNLIHRYCEMLPSDKY 602
           D +A     C   + + +I              +TGA +  + + +L+  Y   L S+  
Sbjct: 821 DADAVL---CDEWQQRLHIEPQDPDAEPAIHEPTTGARLYAEDAPSLVAHYAATLHSE-- 875

Query: 603 YTPKPIFKYK-------SAEEAYECELTLPSNAPFQTI-VGPTSRNKNLSKQLVCLEACE 654
           +    +  Y+           A+ C L LPS A  +++  GP S  K  +K++  L AC+
Sbjct: 876 HLKDAVLAYRMQCTDVLGGTPAFSCTLELPSTAAVRSVDSGPCSSKKR-AKRMAALRACQ 934

Query: 655 KLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGT-----TPIRALSGR 709
           +L Q+G L++ L+P +   +  +      ++ P A     KE  GT      P++ + G 
Sbjct: 935 QLRQLGELDEWLMPKLVGATVAD-----RDAAPVAMNPHHKEWRGTGQPIHVPVKKMDG- 988

Query: 710 WGE 712
           W  
Sbjct: 989 WAR 991



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 161/400 (40%), Gaps = 86/400 (21%)

Query: 920  IYSIVEIVNNSSAESPFDGNTD----DDSKTFVNYFSEKYG----------IVLIHPGQP 965
            +Y   ++ ++ +A SP    T     D+++T+++    KY           +V      P
Sbjct: 1147 LYIFQDVRHDLTAISPLPPKTGTETVDETQTYLSQHLTKYARRVNADEAAALVTQLASTP 1206

Query: 966  LLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKK---PQMHVHMPPELLVRVDVPISVV 1022
            L+ + +     NLL          +GS++     +   P+ +   P    +R DV    +
Sbjct: 1207 LVAVTKLGKLTNLLT------APSRGSRAAATPVRFIIPRFYRVFP----LRSDV----L 1252

Query: 1023 KSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLEL 1082
             S+  LPS++ R + L+LASQ  + +   +    +   L+LEAL +         ERLE 
Sbjct: 1253 SSVLALPSILARYDQLLLASQCNDTLFSGA----LEVDLVLEALASPAARCGLDYERLEF 1308

Query: 1083 LGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQ----GYIRDSA 1138
            LGD+ LK   +CH F T   + E +L       + N  L  L   R+LQ         + 
Sbjct: 1309 LGDTFLKLVATCHTFTTQLGRTEAELHLANKGILTNVRL--LREARRLQLGRWALFASAD 1366

Query: 1139 FDPRRWVAP-----GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMG 1193
            F  +R  AP     G   L+  P E G    +V                         + 
Sbjct: 1367 FRAKRCTAPMSGWMGGALLQAGPVEVGPGETDV-------------------------IR 1401

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1253
             KT+ D  EALIGA  +GGG  AAL++ + L        +L+ + I R  L  +   + E
Sbjct: 1402 EKTLPDVVEALIGAALLGGGTDAALHVCRVL--------TLIPESIRR--LDDFNTLLQE 1451

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHL 1293
            +K      G+E  V    +  + H  +Q  + +   Y HL
Sbjct: 1452 LKLTSVTQGWERRVD---RSGLDH--LQSLFGHVYRYPHL 1486


>gi|238578670|ref|XP_002388796.1| hypothetical protein MPER_12144 [Moniliophthora perniciosa FA553]
 gi|215450407|gb|EEB89726.1| hypothetical protein MPER_12144 [Moniliophthora perniciosa FA553]
          Length = 463

 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 133/490 (27%), Positives = 222/490 (45%), Gaps = 70/490 (14%)

Query: 153 QILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-DNKPKVFGMTASPV 211
           QI L+ L  +   L+ V  +V DECHH   NHPY  IM+E+   S +++PKVFG+TASP+
Sbjct: 8   QIFLNLLTHSLWGLNKVSLLVFDECHHTRKNHPYNGIMREYMLLSPEDRPKVFGLTASPI 67

Query: 212 VRKGVSSAMDCEGQISELESTLDSQVFTIEDKT-EMEVFVPSAKESCRFYDQSKFCGSDL 270
                 +A +    ++EL++ +D++V  + D   E+    P   E  + Y  S    S  
Sbjct: 68  -----QNAKNPLVSLNELQTNMDARVIGVLDHVDELAQHTPKPVEVIQEYSISLEQSSYP 122

Query: 271 KGKLEVSWSKFD-ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           +  L    + FD A+L+ +      C+ D++ +          YH      L  LG  CA
Sbjct: 123 EPSLWSCINVFDRATLTAIA----ECWPDIERR----------YHVT----LGNLGPYCA 164

Query: 330 YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF---LDFGFDY 386
              + + ++ ++ A      + Q  L   +  + V+HV  + L    + F   +D   DY
Sbjct: 165 SLYLFMEMKNIISA------FYQPDLNPSFSDDLVVHVPHTTLEDLPEHFDDIVDILVDY 218

Query: 387 SK-------------AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERF 433
            +              V L + + K+  L+ + ++    T    IIFVE+    +V    
Sbjct: 219 EQFYSVRSDYFLLPSTVPLEWCTPKIKTLVDILVAHYTPT-FQGIIFVEQ---RQVATCL 274

Query: 434 VKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN-----LLFATDVIEEGM 488
              +P++  L      G          +  +  L+  RG  V+      + AT V EEG+
Sbjct: 275 AGVLPYIEELKGLVKCGDFFGNVNDVEESLRGTLKCSRGPDVSSPNITAVIATSVAEEGL 334

Query: 489 HVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVT 548
             P C  VIRFD  + + +Y+QSRGRAR   S+FI+ML  G++  R K    +++E  + 
Sbjct: 335 DFPACDIVIRFDPLQHMVAYVQSRGRARNKISKFIIMLPEGDVISRAKYEAFLQAEVHLK 394

Query: 549 DT-ALSRDPEACF-----LKACTYVKTKS-----YIVESTGASVTTDSSVNLIHRYCEML 597
           D   +SR P+         +A   V+  +     Y+V  T A +  D+S+ L++  C ++
Sbjct: 395 DIYNVSRPPDDAMDEDSDSEADEEVELDTQDRERYVVPHTSAFINYDNSIALLNHLCALI 454

Query: 598 PSDKYYTPKP 607
           P D   TP P
Sbjct: 455 PRD--LTPLP 462


>gi|332020119|gb|EGI60563.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
          Length = 1979

 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 163/694 (23%), Positives = 294/694 (42%), Gaps = 95/694 (13%)

Query: 403  LQLFLSFGKSTQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTT---- 453
            LQ +   G    +LC +IFV++   AK++   + ++      L  L+  Y     T    
Sbjct: 430  LQRYSCSGTDPDLLCGVIFVDKGFTAKILFYLLSEICKHDEDLHFLSPLYTIERNTDDVG 489

Query: 454  -SVD-ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
             S D  +  + Q+EVL+ FR  + NLL AT ++EEG+ +P C++V+R+D PK   SYIQ 
Sbjct: 490  YSRDLEMGHRKQEEVLKRFRIHECNLLIATSILEEGIDIPKCNFVMRYDFPKNYQSYIQC 549

Query: 512  RGRARQHNSQFILMLERGNLKQR-NKLFDIIRSERSV----TDTALSRDPEACFLKACTY 566
            + RAR  ++  +L++ +   K+   +L      E+++    ++  L+ D E         
Sbjct: 550  KSRARAMDALHVLLVPQEASKEFIWQLAQYQYIEKTLLLKCSNKELTEDEENEADMYAAM 609

Query: 567  VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE----EAYECEL 622
            +     +       VT +S+++L++RYC  LPSD +    P ++ ++        Y C L
Sbjct: 610  IPHYKPLDGDDAPKVTFNSAISLVNRYCAKLPSDTFTRLTPEWRIETVNIHDIMMYICFL 669

Query: 623  TLPSNAPFQTIVGPTSR-NKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE-----PSEN 676
             LP N+P + ++      N+ +++++  L+ C  LH+   ++D+LLP  +E     P + 
Sbjct: 670  RLPINSPLKYVITSYPMPNRAMARRMAALQMCIDLHRENEIDDNLLPIGKENFKAKPEDA 729

Query: 677  NLISKKNESLPG-----AGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN--FACSI 729
             + +  +ES         GTTKR++ +      AL+       GV  + Y  N   +C +
Sbjct: 730  EVPALPDESRADFSEARPGTTKRRQYYYKKTAEALTD-CRPIVGVPSYLYHINMVLSCPL 788

Query: 730  VTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAKCFQE 788
              E  +    +   E ++ +G   L L  + K     + + SG+VH+      K     E
Sbjct: 789  PEEQNTRGRRIYPPE-ESAIGFGILTLKEIPKLCPFPIYTRSGEVHVQLKLSKKTVILDE 847

Query: 789  L-------FFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGS 841
                    F N  F  +    K      + +  + N   +    Y+++P++I  T     
Sbjct: 848  FQIERVDTFLNYTFTNVLRLQK------YLMLFDPN---ASENSYIIVPVKIFATCEGSD 898

Query: 842  WRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGS 901
              ++W                +FL     N N          P K     +      N  
Sbjct: 899  ISVDW----------------NFLECIYQNRNA--------VPTKIPEEDR-----KNFK 929

Query: 902  VDAKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGI 957
             D     D V++  +      + + + EI  N + +S F G+   D  TF  Y+ +KYGI
Sbjct: 930  FDPSKYYDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPGH---DYSTFEEYYYKKYGI 986

Query: 958  VLIHPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHMPPEL 1011
             + +  Q LL +  +    N L     N  G     S + +K        Q  + +  EL
Sbjct: 987  QIQNLEQSLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVAEL 1045

Query: 1012 LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
                  P S+ +    LP ++ R+ +L+LA+Q+R
Sbjct: 1046 CAIHPFPASLWRQAVCLPCILYRINALLLANQIR 1079



 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 131/316 (41%), Gaps = 86/316 (27%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            SLIL+ALT     +  ++ERLE +GDS LKYA++ +L+ TY   HEG+LS  RS  V N 
Sbjct: 1444 SLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNL 1503

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL---SLRPVPCECGV-----DTLEVP--- 1167
             L++LG  + L   +  + F+P   W+ P       L     E GV     +  ++P   
Sbjct: 1504 NLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELEQALIESGVPSALWNQADIPTLQ 1563

Query: 1168 -LDGKFFTQ-----DTKVVVGK---------------------PCDM-GHRWMGSKTIAD 1199
             ++    TQ     + K+V+ K                     P ++     +  K+IAD
Sbjct: 1564 AMNPTEITQLVKETEEKLVIMKSELDKNESRLSNNLDNLRCFIPYNLITQHSIPDKSIAD 1623

Query: 1200 CAEALIGAYYVGGGLIAALYMMKWLGI------------------------------DAD 1229
            C EALIGAY +  G   AL  M WLGI                              +  
Sbjct: 1624 CVEALIGAYLIACGPRGALLFMTWLGIHVLPTEEICVISENEPKERIPGSTPYIKGVNEY 1683

Query: 1230 LEVSLVDDCITRAS-----LRSYVP--------RINEIKDIESKIGYEFTVKFLLQEAIT 1276
             E +    C  +       L  Y+P         ++  +++E  IGY+F     L +A T
Sbjct: 1684 RETTWTQICYGKLEEPQNPLLRYIPDPESELYMMLDGYEELEKSIGYKFRDSSYLLQAFT 1743

Query: 1277 HASVQEFY---CYQNL 1289
            HAS Q      CYQ L
Sbjct: 1744 HASYQPNRLTDCYQRL 1759



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 9/116 (7%)

Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDS 1383
             PKALGD+ ES+ GA+ +D+ ++LD VW ++  I+   +      +P  P+REL+EL   
Sbjct: 1858 VPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFSTNVPKSPIRELLELEPE 1917

Query: 1384 LGYFVKENCTLKGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
               F +      G  V   +     DV   G  +G  R+ + AK  AA   LKKL+
Sbjct: 1918 TAKFGRPEKLADGRRVRVTV-----DVFGKGSFKGIGRNYRIAKCTAAKCALKKLK 1968



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 104/233 (44%), Gaps = 29/233 (12%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA---QAIKSNGFKKLIIFL 99
           +F PR Y++++   AK +N I  L   + +T +++ LI++ A   + + SNG K+ I  L
Sbjct: 13  SFTPREYEVELLYAAKEKNIIVCLGKNSEQTFLSIKLIQEFATNNRRLVSNGGKRAIYIL 72

Query: 100 APTVH-LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158
                  +   Y  I+  TD +V         D    + + K    + VLV T ++    
Sbjct: 73  NDKDKCTIIGTY--IKQLTDLKV------LACDSGVLEGFDKSFESSHVLVGTSKVYAQL 124

Query: 159 LRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVV------ 212
           + ++ L    +  +++DECH +  +     +++ F    +N P++ G+ A PV       
Sbjct: 125 ISESKLLPCHINLVIVDECHKSIEDSNLKFVLQTFL-LCNNVPRIIGL-AVPVFNLTQEP 182

Query: 213 -RKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSK 264
            R G+        +I ++E+    +V T  D   +  + P  +E    YD+ +
Sbjct: 183 GRLGL--------EIEKVEAAFQCEVETANDILSIIRYSPKPREYVVEYDRGE 227


>gi|405973601|gb|EKC38303.1| Putative ATP-dependent RNA helicase DDX58 [Crassostrea gigas]
          Length = 948

 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 147/563 (26%), Positives = 252/563 (44%), Gaps = 76/563 (13%)

Query: 29  DHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAI 87
           DH+ D   S         R YQ+++   + + +N I V  TG+GKT +A+ +IK   + I
Sbjct: 268 DHSDDEEESVNPKEELKLRSYQMELARPSLEGKNAIIVAPTGSGKTHVALCIIKHHMETI 327

Query: 88  KSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGA-------KGVDEWDSQCWQK 140
           KS    K +IFL     L  QQ      +  F+V+   G        K ++EW       
Sbjct: 328 KSIRHPK-VIFLVEQSALAEQQGKQCMTYLPFKVKVITGESQRNERMKSLNEW------- 379

Query: 141 EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY------ 194
            I + D+LV+T QILL+ALR   +S+     +V DECHH   NH Y  IM  +       
Sbjct: 380 -IARRDLLVVTAQILLNALRDGIVSVTDFSLMVFDECHHTNDNHSYNMIMNRYLDLKLQD 438

Query: 195 -HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF--TIEDKTEMEVFVP 251
             ++   P V G+TAS  V +  +  ++ +  I ++ + +D++     IE+ TE+E +V 
Sbjct: 439 RERAKTLPMVLGLTASVGVGRA-TMIVEAKRHIEKIMANMDAESIATVIENTTELEKYVI 497

Query: 252 SAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKL--QGSQLNCYKDMDDKHKTLRKQ 309
             K++    ++ +   + LK  LE    ++   +S L  + +++N  K +    +T RK 
Sbjct: 498 IPKQN---LERVQKLETVLKPPLEKGSDQYTQWVSMLWRETAKIN-NKVVVRFFETCRKY 553

Query: 310 LSDYHAKILYCLDEL---GLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLH 366
           L  Y+  ++   D      L   ++  K   +  +KA +   I R+   + K  LE+   
Sbjct: 554 LDLYNKALIIYEDARPSDALAYIFKEFKK-WKHTVKADDTERIMRRMFDEIKSTLEDC-- 610

Query: 367 VIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLF-LSFGKSTQVLCIIFVERII 425
                                 ++D  + + KL  L  +    F ++     I+FV+   
Sbjct: 611 ----------------------SIDPCHRNPKLTNLRDIIGEHFRENPGARVIVFVKTRE 648

Query: 426 AAKVVERFVKKVPFLTHLTVAYLTGSTTSVD--ALTPKVQKEVLESFRGGKVNLLFATDV 483
            AK +E ++ +   L+ L      G   + +   +T   Q E LE F+ G   ++ AT V
Sbjct: 649 LAKAMETYMNETKELSILKPIQFVGVQANRENGGMTKVQQDETLELFKEGNHKVIIATSV 708

Query: 484 IEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML---------ERGNLKQR 534
            EEG+ +  CS V+R+D      + +QSRGR R  NS ++++          E GN  + 
Sbjct: 709 AEEGLDILKCSLVVRYDHVTNEIAMVQSRGRGRSENSIYVVLASENSKTLKREEGNRIRE 768

Query: 535 ---NKLFDIIRSERSVTDTALSR 554
              N+  D +R+E S  + A+ R
Sbjct: 769 AMMNRAIDKVRAELSTDEEAVLR 791


>gi|449532911|ref|XP_004173421.1| PREDICTED: endoribonuclease Dicer homolog 2-like, partial [Cucumis
            sativus]
          Length = 307

 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/232 (37%), Positives = 118/232 (50%), Gaps = 27/232 (11%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            +LEA+TT  C E F++E LE LGDS LKYA   HLF T+   HEG L+ ++   V N+ L
Sbjct: 1    VLEAITTKKCQEKFNLESLETLGDSFLKYATGQHLFRTFQNDHEGLLTLKKDRIVSNAAL 60

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEV-PLDGKFFTQDTKVV 1180
             + G + K+ G+IRD AFDP+ W  PG             DT EV  L  +      KV 
Sbjct: 61   RRRGCEHKISGFIRDEAFDPQNWDIPG-------------DTHEVYQLREEVLFSGRKVY 107

Query: 1181 VGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCIT 1240
            V +      R + SK IAD  EALIGAY   GG  AA+  +  +GI+ +      D    
Sbjct: 108  VQRK-----RKIKSKRIADVVEALIGAYLSTGGEKAAMQFLNRIGIEVNF-----DFVPY 157

Query: 1241 RASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASV---QEFYCYQNL 1289
                R  V ++  +  +ES + Y F  + LL EA+TH S    +   CYQ L
Sbjct: 158  ERPFRVDVHKLINVGHLESLLKYTFNDRSLLLEAMTHGSYMLPEIPRCYQRL 209



 Score = 42.4 bits (98), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 11/107 (10%)

Query: 1060 SLILEALT-------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARR 1112
            SL+LEA+T        +  C     +RLE LGDSVL YA++ HL+  YP      L+  R
Sbjct: 186  SLLLEAMTHGSYMLPEIPRC----YQRLEFLGDSVLDYAITVHLYNKYPGMTPELLTDMR 241

Query: 1113 SWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCEC 1159
            S +V N    +     +L   I   + D  + ++    +   +  E 
Sbjct: 242  SASVSNDCYSRTALKAQLHKSILHCSHDLHKHISSAVQNFETLSSEA 288


>gi|194744012|ref|XP_001954492.1| GF18290 [Drosophila ananassae]
 gi|190627529|gb|EDV43053.1| GF18290 [Drosophila ananassae]
          Length = 2252

 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 137/523 (26%), Positives = 211/523 (40%), Gaps = 152/523 (29%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1728 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1787

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVPCECGVDTLEVP---------LD 1169
             L++LG  ++L  Y+  + F+P   W+ P      P   E  +   ++P         LD
Sbjct: 1788 NLYRLGRRKRLGEYMIATKFEPHDNWLPP--CYYVPKELEKALIEAKIPTHHWKLADLLD 1845

Query: 1170 GKFFT--QDTKVVVGKPCDMGHRWMGSKT------------------------------- 1196
             K  +  Q  ++V  K   +G    G ++                               
Sbjct: 1846 IKNLSSVQICELVREKAEALGLEQNGPQSGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKS 1905

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGI------------------------DADLEV 1232
            IADC EALIGAY +  G   AL  M WLGI                        DA+  V
Sbjct: 1906 IADCVEALIGAYLIECGPRGALLFMAWLGIRVLPFTRQPAEQEEAKRVPGSSKSDAEGMV 1965

Query: 1233 SLVDDCIT-RASLRSYVPR--------INEIKDIESKIGYEFTVKFLLQEAITHASVQEF 1283
            ++     T R+ L  + P         ++  ++ E+ +GY+F  +  L +A+THAS    
Sbjct: 1966 TVYGAWPTPRSPLLHFAPNATGELDQLLSGFEEFEASLGYKFRDRSYLLQAMTHASYTPN 2025

Query: 1284 Y---CYQNL--------------------------------------------------Y 1290
                CYQ L                                                  +
Sbjct: 2026 RLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFH 2085

Query: 1291 KHLQHCSTLLLSQITEYVKSFPKPGETT------------DSGPSMKAPKALGDLLESIV 1338
            K  +H S  L   I  +V+   + G +             D    ++ PKALGD+ ESI 
Sbjct: 2086 KFFRHLSPGLNDVIDRFVRIQQENGHSISEEYYLLSEEECDDAEDVEVPKALGDVFESIA 2145

Query: 1339 GAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCTLKG 1396
            GA+ +D+ ++LD VW+++  ++SP +      +P  P+REL+EL      F K      G
Sbjct: 2146 GAIFLDSNMSLDVVWQVYSNMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADG 2205

Query: 1397 EMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
              V   +     DV   G   G  R+ + AK  AA   L++L+
Sbjct: 2206 RRVRVTV-----DVFCKGTFRGIGRNYRIAKCTAAKCALRQLK 2243



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 127/525 (24%), Positives = 208/525 (39%), Gaps = 113/525 (21%)

Query: 577  TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ- 631
            TGASV   S++ LI++YC  LPSD +     +++   +E A    Y+  L LP N+P + 
Sbjct: 817  TGASVDLGSAIALINKYCARLPSDTFTKLTALWRCTRSERAGKTLYQYTLRLPINSPLKH 876

Query: 632  TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSEN 676
             IVG     + L+++L  L+AC +LH++G L+D L P       ++E        EP + 
Sbjct: 877  DIVGLPMPTQTLARRLAALQACAELHRIGELDDQLQPIGKEGFRALEADWECFDLEPEDE 936

Query: 677  NLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTE---- 732
             ++   +E  PG  T +R+  +          R        L+  +    C I  E    
Sbjct: 937  QILQMSDEPRPGT-TKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTR 995

Query: 733  ---IY------SGFVLLIESELDNDVGNFELELYLVSKTVKATVS-SSGQVHLDADQMSK 782
               IY       GF +L    +          ++  S  VK ++  +  QV L ++Q+  
Sbjct: 996  GRKIYPPEDAQQGFGILTTKRIPKLSA---FSIFTRSGEVKVSLELAKEQVVLTSEQIG- 1051

Query: 783  AKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSW 842
              C      NG     F                TN L    ++ L  P    N       
Sbjct: 1052 --CI-----NGFLNYTF----------------TNVLRLQKFLMLFDPDSTEN------- 1081

Query: 843  RINWSGINPCASVVEFIK--------EKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDV 894
                     C  +V  +K        +  FL   Q N   GN+ P R  P        D 
Sbjct: 1082 ---------CVFIVPTVKMPAGGKMIDWKFLDVIQAN---GNTLP-REVP--------DE 1120

Query: 895  IHLANGSVDAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNY 950
              LA    DA+  +D VV+  +  +     + + EI  + S  S F G   +  +TF +Y
Sbjct: 1121 ERLAK-PFDAQCFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG---EQYRTFKHY 1176

Query: 951  FSEKYGIVLIHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMH 1004
            +  KYG+ + +  QPLL +  +    N L     N  G     S + +K        Q  
Sbjct: 1177 YYAKYGLNIQNSSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQ 1236

Query: 1005 VHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEIN 1049
            + + PEL      P S+ ++   LP ++ R+  L+LA  +R++++
Sbjct: 1237 I-LVPELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVS 1280



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)

Query: 413 TQVLC-IIFVERIIAAKVVERFV----KKVPFLTHLTVAYLTG-----STTSVDA-LTPK 461
           +  LC +I+  +   A+V+   +    ++ P L  L   Y T      +T   +A L  +
Sbjct: 488 SDTLCGLIYCNQNHTARVLFELLAEMSRRDPNLKFLRCQYTTDRVADPATEPKEAELEHR 547

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL+ FR    N+L  T ++EEG+ VP C+ V+R+D P T  SY+Q +GRAR   + 
Sbjct: 548 RQEEVLKRFRMHDCNVLIGTSILEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAY 607

Query: 522 FILML 526
            ++++
Sbjct: 608 HVILV 612



 Score = 45.4 bits (106), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 27/204 (13%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F PR +Q+++   A  RNTI  L   + K  IA+ L++++++  +  G  K+ ++L+  V
Sbjct: 15  FTPRDFQVELLASAFERNTIICLGHRSSKEFIALKLLQELSRRARCRG--KVSVYLSTQV 72

Query: 104 HLVHQQ---YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
               +    Y ++   TD  V +      V  +D  CW       +V ++ P+  +  L 
Sbjct: 73  GRNTEPTSIYTMLSHLTDLRVWQEQPDMQV-PFD-HCW----TDYNVSILRPEEFISLLE 126

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKG 215
              L L  V  IV+++CH +     Y +I+  F          ++P++ G+        G
Sbjct: 127 ARELLLSSVELIVLEDCHDS---EVYRRILPLFEDHILPAAHHDRPRILGLA-------G 176

Query: 216 VSSAMDCEGQ-ISELESTLDSQVF 238
              + +CE Q +S + +TL+  + 
Sbjct: 177 PLHSAECELQELSAMLATLERNIL 200


>gi|443720569|gb|ELU10263.1| hypothetical protein CAPTEDRAFT_201240 [Capitella teleta]
          Length = 794

 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 131/535 (24%), Positives = 241/535 (45%), Gaps = 66/535 (12%)

Query: 60  RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH-TD 118
           +N + V  T +GKT ++  +IK+     K    K  ++FLAP   LV QQ  V++    D
Sbjct: 88  QNAVIVAPTNSGKTRVSAEIIKN--HLTKHPDSK--VVFLAPNGMLVQQQCKVLQKSLPD 143

Query: 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI---VCFIVID 175
            ++    G    D   S   +      DV+VMTPQIL +A        +    +  ++ D
Sbjct: 144 AKIRSLQG----DACTSLQLKLSFRTYDVVVMTPQILTNAYDDVIDRNEPRFPIGLMIFD 199

Query: 176 ECHHATGNHPYTKIMKEFYH---KSDNKPKVFGMTAS-PVVRKGVSSAMDCEGQISELES 231
           ECHH    HPY+++M E YH    +D +P++ GMTAS  +  K V +A+     I +L +
Sbjct: 200 ECHHCLKKHPYSQLM-EIYHLDLNADQRPRIIGMTASVRITSKNVEAAV---THILKLLA 255

Query: 232 TLDSQVFTIED-KTEMEVFVPSAKE---------SCRFYDQSKFCGSDLKGKLEVSWSKF 281
            +D+Q+  +E+ K E+ ++    +E         +  F +  +    D++G+++    K+
Sbjct: 256 NMDAQLVMVEENKKELGLYCNKPEEIIIELRSSGNNWFTNTIQKIMKDIEGEMK----KY 311

Query: 282 DASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVL 341
              ++ ++  Q +   D+  + +      + +H  I        LI   E V +    ++
Sbjct: 312 HPQMTIVK-CQHHIAVDLTPRARKGEIMYTQWHRTITR-----KLISRIEDVDV-KRDLV 364

Query: 342 KAQEECEIYRQSSL---QCK------YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDL 392
              +  +IY  S +   +C+      Y   +   ++    P  + +  +   D    ++ 
Sbjct: 365 ACTDYLDIYNNSLMINQECRTMDAWRYLARKTERLVKLKEPDTNLMLANLLIDERNEIE- 423

Query: 393 GYISTKLHELLQLFLSFGKS---------TQVLCIIFVERIIAAKVVERFVKKVPFLTHL 443
            Y    ++E    +LS  K            + C++F    +    +  + K  P L  L
Sbjct: 424 QYCEDPVNE--NPWLSVVKEHILKRKRPGLTMRCLVFCRTRVVCAALAEWAKNTPDLCEL 481

Query: 444 TVAYLTGSTTSVD--ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501
             A+LTGS    D   LT   Q EV++ FR G   +LF T +++EG+ V  C  VIR++ 
Sbjct: 482 KPAFLTGSNAPADTNGLTVHEQTEVIQEFREGDCQVLFTTSLLQEGIDVQACDNVIRYNF 541

Query: 502 PKTVSSYIQSRGRARQHNSQFILMLERGNLKQ--RNKLFDIIRSERSVTDTALSR 554
           P       Q+RGRAR+ ++ + ++     + Q  +NK+ + + +E  +   A+SR
Sbjct: 542 PSDTIGGTQARGRARKEDATYTVLATAKQITQEHKNKMNETLHNEALLKLLAMSR 596


>gi|121807817|sp|Q2VF19.1|DCL1_CRYPA RecName: Full=Dicer-like protein 1; Includes: RecName:
           Full=Endoribonuclease DCL-1; Includes: RecName:
           Full=ATP-dependent helicase DCL-1
 gi|77632774|gb|ABB00356.1| dicer-like protein 1 [Cryphonectria parasitica]
          Length = 1548

 Score =  131 bits (330), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 119/205 (58%), Gaps = 13/205 (6%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD-IAQAI--KSNGF-KKLIIFLAP 101
           PR YQ+++FE AK++NTIAVL+TG+GKT+IA +L+   + Q +  ++ G  +++  FL  
Sbjct: 99  PRDYQMELFERAKQQNTIAVLDTGSGKTLIAALLLDHTVNQELEDRAKGLPRRIAFFLVE 158

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
            V L  QQ+ V+  +    V  + G    + W    W+ ++  ++V+V T +IL   L+ 
Sbjct: 159 KVALAFQQHAVLECNLAHSVAVFSGESIKNTWTKGFWETQLADHEVIVCTAEILNQCLQY 218

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVS 217
           A++ +D +  +V DE HH   NHPY +I+K++Y    ++    P++FGMTASP     V 
Sbjct: 219 AYIRIDQINLLVFDEAHHTKKNHPYARIIKDYYASGKDRGLRLPRIFGMTASP-----VD 273

Query: 218 SAMDCEGQISELESTLDSQVFTIED 242
           + +D      ELE  L S++ T  D
Sbjct: 274 ALIDVRQAAIELEGLLHSRIATTAD 298



 Score =  127 bits (320), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 143/290 (49%), Gaps = 17/290 (5%)

Query: 393 GYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK-VPFLTHLTVAYLTGS 451
           G +S+KL  L +L   +   + + CI+FVER   AK++  F +     +  L V  L G+
Sbjct: 420 GLLSSKLKTLSKLLEEYFTDSSIRCIVFVERRWTAKLLTDFFESHAAEIPGLKVGSLMGA 479

Query: 452 TTSVDALTPKVQKEV--LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
                +     ++++  + SF+ G  N +FAT V EEG+ +P+C+ +IRFD+ KT+  YI
Sbjct: 480 NAEGGSSQTSFREQIRTILSFKKGNTNCIFATSVAEEGLDIPDCNLIIRFDICKTMIQYI 539

Query: 510 QSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTY--- 566
           QSRGRARQ +S +I ++E GN   R  +     +E+ +     +  PE   LK   Y   
Sbjct: 540 QSRGRARQADSTYIHLIEGGNGDHRRIMHQNAENEK-LLRRFCNTQPEDRLLKGSDYDMD 598

Query: 567 ------VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPK----PIFKYKSAEE 616
                    + Y ++STGA +T  +S+ ++  +   L +   Y         +   S + 
Sbjct: 599 FFLRQERNQRQYTIKSTGARLTYKNSLPILQAFLNTLRNQDDYAEGMDLVADYSILSVQG 658

Query: 617 AYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL 666
            + CE+ +P  +P  + +G     K ++K     E C +L Q   L+DHL
Sbjct: 659 GFICEVMMPPLSPVTSAIGKVYSTKQVAKCSAAFELCFQLIQKKFLDDHL 708



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 86/217 (39%), Gaps = 52/217 (23%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTT-------- 1068
            +P+ VV   YLLPS++ R+E  ++A        C      I   L LEALT         
Sbjct: 1007 LPVDVVAMAYLLPSIIHRIEQNLIALDA-----CRLLQLDIHPDLALEALTKDSDNQGED 1061

Query: 1069 --LGCCESF-----------SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWA 1115
              +   ++F           + ERLELLGDS LK A +  +F   P K E      R   
Sbjct: 1062 ERMDSIQAFEPVNFQPGMGANYERLELLGDSFLKMATTIAVFTLIPNKDEFDYHCERMVM 1121

Query: 1116 VCNSTLHKLGT--DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFF 1173
            +CN  L  +    D KL  YIR  +F+   W    +L                   GK  
Sbjct: 1122 ICNQNLFGVAKSDDLKLHEYIRSKSFERGTWYPVLKLEF-----------------GKTH 1164

Query: 1174 TQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYV 1210
             +  K        M    +  K+IAD  EALIGA Y+
Sbjct: 1165 LKTLK-------QMDEHRLADKSIADVCEALIGAAYM 1194


>gi|242019168|ref|XP_002430037.1| dicer-1, putative [Pediculus humanus corporis]
 gi|212515099|gb|EEB17299.1| dicer-1, putative [Pediculus humanus corporis]
          Length = 701

 Score =  131 bits (329), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 5/218 (2%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAPTVH 104
           R YQ ++ E+AK++N+I  L TG GKT+IA+ ++    Q IK   N   K + F+  T  
Sbjct: 3   RNYQAELIEIAKKQNSIIYLPTGTGKTLIAIQVLLSKTQEIKKPYNEGGKRVFFIGATKV 62

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           LV+Q   V+  HT F++  Y G   VD W+   W  E  K  V+V+T +IL   L   F+
Sbjct: 63  LVYQLAKVLCTHTKFKIGYYTGDMNVDSWNKDIWLGEFLKKQVMVLTAEILKGLLTLKFI 122

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAMDCE 223
             + +  IV DECHH T NHPY +IM+EF    D+K P + G++A+ +++  +    D E
Sbjct: 123 GAENISLIVFDECHHGTLNHPYKRIMQEFKDLPDSKLPLILGLSAT-LLKMNIKKT-DIE 180

Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD 261
             + E+E T  +++ +I + +++  ++    E    Y+
Sbjct: 181 ISLREMEETYRAKIISISENSDITRYMSVCVEKILNYN 218



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 131/261 (50%), Gaps = 21/261 (8%)

Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
           + E+++    G++NL+FAT+++EEG+ +P C+ VI FD PK  SSYIQSRGRAR  NS +
Sbjct: 391 KNEIMKRMASGELNLIFATNILEEGIDLPACNLVISFDFPKGYSSYIQSRGRARNENSIY 450

Query: 523 ILMLERGNLKQRNKLFDIIR------SERSVTDTALSRDPEACFLKACTYVKTKSYIVES 576
            +  +  N K+  KL D  R      +ER   + +L   P+  +L+ C   +T S + +S
Sbjct: 451 YIFSDE-NEKKNEKLIDEYRDFEKTLNERIRGEISL---PDV-YLEKCNKNETISIVGKS 505

Query: 577 TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIV-G 635
               V    ++  + +YC  LP D +    P   YK   E     L LP N+    ++ G
Sbjct: 506 DAIFVDGCMAIACVEKYCGQLPQDMFTFLCPEIFYKKFGEMKRAFLKLPFNSGIPDVIEG 565

Query: 636 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLIS---------KKNESL 686
               N   +K+ V ++  + LH++  ++D L     E  + +  S         K +++L
Sbjct: 566 DLKSNMKEAKKSVFMKTVKLLHELNLIDDSLNMRQLEIEKVDFKSLFPHYKEEEKIDKTL 625

Query: 687 PGAGTTKRKELHGTTPIRALS 707
           P  GT  RK+++    +  LS
Sbjct: 626 PQPGTRNRKQIYNINGVECLS 646


>gi|37360146|dbj|BAC98051.1| mKIAA0928 protein [Mus musculus]
          Length = 1475

 Score =  130 bits (328), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 155/291 (53%), Gaps = 20/291 (6%)

Query: 428 KVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKV-------QKEVLESFRGGKVNLLFA 480
           ++++   K+ P L +++  ++TG     +    K        Q+EVL  FR  + NLL A
Sbjct: 18  RLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEEVLRKFRAHETNLLIA 77

Query: 481 TDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDI 540
           T V+EEG+ +P C+ V+RFDLP    SY+QS+GRAR   S ++++ +   +K   +    
Sbjct: 78  TSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVMLADTDKIKSFEEDLKT 137

Query: 541 IRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV--ESTGASVTTDSSVNLIHRYC 594
            ++   +     S+  +         V  +     Y++  +  G  VT ++++  I+RYC
Sbjct: 138 YKAIEKILRNKCSKSADGAEADVHAGVDDEDAFPPYVLRPDDGGPRVTINTAIGHINRYC 197

Query: 595 EMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEA 652
             LPSD +    P  + +   +  +   L LP N+P + +IVGP   +  L++++V L  
Sbjct: 198 ARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPMDSVRLAERVVALIC 257

Query: 653 CEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTTKRKELH 698
           CEKLH++G L++HL+P    +V+   E +L  ++  S+PG  G+TKR++ +
Sbjct: 258 CEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCY 308



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 3/124 (2%)

Query: 1028 LPSVMQRLESL--MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGD 1085
            +P++M  +++L   + S+    +   SR       LIL+ALT     + F++ERLE+LGD
Sbjct: 820  MPAMMNAVKALKDRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 879

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RW 1144
            S LK+A++ +LF TYP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W
Sbjct: 880  SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 939

Query: 1145 VAPG 1148
            + PG
Sbjct: 940  LPPG 943



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1358 PKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPET 1417

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1418 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1469

Query: 1441 KRI 1443
             ++
Sbjct: 1470 PQV 1472



 Score = 43.5 bits (101), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS--- 988
            +P       + +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +   
Sbjct: 514  TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 573

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
                K     +  Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 574  SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 632


>gi|313236326|emb|CBY11646.1| unnamed protein product [Oikopleura dioica]
          Length = 1519

 Score =  130 bits (328), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 190/446 (42%), Gaps = 77/446 (17%)

Query: 917  TGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPH 976
            T   + + EI  +   +SPF     DD ++F  Y+ +++ + L +  QPLL +  +    
Sbjct: 907  TQNRFYVAEIQYDMDPDSPFPA---DDYESFRQYYMQRWALCLTNEKQPLLDVDHTDCRL 963

Query: 977  NLLV-NFNDGGGSGKGSKSGMNTKKPQM-----HVHMPPELLVRVDVPISVVKSLYLLPS 1030
            NLL   F    G    + S +  K+ +        ++ PE+L    V  S+ +    LPS
Sbjct: 964  NLLTPRFVTQKGRALPA-SALEKKRQKYEDKANRQYLIPEILDVHPVSASLWRKAVCLPS 1022

Query: 1031 VMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKY 1090
            ++ R+  L+ A  LR  I+  +R        IL+ LT     + F++ERLE+LGD  LKY
Sbjct: 1023 ILHRITCLLAAEDLRRRISRQTR-----VDQILQTLTLSKSSDGFNLERLEMLGDCFLKY 1077

Query: 1091 AVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR----RWVA 1146
            +V+ +L+  Y  +HEGQLS  RS  V N  L +LG    + G +    F        W+ 
Sbjct: 1078 SVTVYLYCKYEHQHEGQLSFFRSKKVSNRNLFRLGVYNDIPGRMVAEQFMQNDTGGNWLP 1137

Query: 1147 PGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGH---RWMGSKTIADCAEA 1203
            PG                       +F +D    + KP    H   +++  K+IADC EA
Sbjct: 1138 PG-----------------------YFNKD-HAALEKPLIYNHYSDQYLTDKSIADCMEA 1173

Query: 1204 LIGAYYVGGGLIAALYMMKWLGI----------------------DADLEVSLVDDCIT- 1240
            LIGAY    G+ A    + ++G+                         +E   +  C   
Sbjct: 1174 LIGAYLKATGIEATQQFLCYMGLIVLPSSSCEPETGKPLPPFLLLAPPIEPFHLKSCTQL 1233

Query: 1241 --RASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCST 1298
                 L++         + E KIGY F  K  L +++THAS Q +    N Y+ L+    
Sbjct: 1234 EKMQRLQALDKLTRTYGEFEKKIGYTFKNKGYLLQSLTHASYQ-YNQVTNCYQRLEFLGD 1292

Query: 1299 LLLS-QITEYVKSFP----KPGETTD 1319
             +L   IT ++   P     PGE TD
Sbjct: 1293 AVLDFLITRHLFDHPTKRFSPGELTD 1318



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 147/330 (44%), Gaps = 41/330 (12%)

Query: 417 CIIFVERIIA---AKVVERFVKKVPFLTHLT------VAYLTGSTTSVD----ALTPKVQ 463
           C++  ER +A    K+++   +  P L H++      +A +      +D    A   K Q
Sbjct: 427 CVLVNERPVAKYLGKILKDAARADPDLAHISSQALCQLAKVDNPNGHLDEEEIADEKKKQ 486

Query: 464 KEVLESFRGGKVNLLFATDVIEEGMH----VPNCSYVIRFDLPKTVSSYIQSRGRAR--- 516
           +E L  FR  + N+L A    E   H    +P C+ V+RFD P    SY++  G  R   
Sbjct: 487 EEALHKFRTREANILIAQAETENEAHRHFDIPKCNLVVRFDAP---GSYLRYDGGKRLLS 543

Query: 517 -QHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVE 575
            Q+++ + +++ +    Q  ++ +  +          S   EA   + C  +   +++ E
Sbjct: 544 QQNDALYGILINKKEKIQFCRMLEEFKMLEEYLKNRASLAEEAGPAELCLDLDV-THLFE 602

Query: 576 ST-----GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK-YKSAEEAYECELTLPSNAP 629
                     ++  +S++L+++YC  LP D +     + K  + A   ++  L LP+N+ 
Sbjct: 603 DMPKMRPQIKLSMQNSLSLLNKYCNRLPCDSFTQLSVLRKTLQLANGKFQTSLVLPNNSH 662

Query: 630 FQTIV-GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSEN--------NLIS 680
            + IV G       LSK+   LEAC KL  +G L+D L  S +E  +         N +S
Sbjct: 663 LRGIVVGHPKETAELSKRSAALEACTKLRILGELDDFLFNSSKEMDKYKFEIDPFPNPLS 722

Query: 681 KKNESLPGA-GTTKRKELHGTTPIRALSGR 709
           +K +  PG  G  KR++ +     R+L  +
Sbjct: 723 RKRKPPPGMEGGPKRRQKYPRHIPRSLRAK 752



 Score = 57.8 bits (138), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 2/59 (3%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIEL 1380
            ++ PK LGD+ ES+ GA+ +D+ +NLD VW +++P+L   +    +  P  P+REL+EL
Sbjct: 1395 IEVPKVLGDIYESVAGAIYLDSGMNLDAVWGVYRPMLQKYIDKYSINPPRSPIRELLEL 1453


>gi|321461347|gb|EFX72380.1| hypothetical protein DAPPUDRAFT_308316 [Daphnia pulex]
          Length = 1741

 Score =  130 bits (327), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 161/312 (51%), Gaps = 29/312 (9%)

Query: 414 QVLCIIFVERIIAAKVVERFVKKV----PFLTHL----TVAYLTGSTTSVDALTPKVQKE 465
           Q+  +IF ER   AK++   +K      P L +L    TV  + G +        + Q++
Sbjct: 352 QLCGMIFTERRTTAKLLYHLLKDASRCDPQLAYLSPLYTVDRMEGVSVKEMENEERKQED 411

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           V++ FR    N+L AT V+E+G+ VP C  VIR+DLP++  +Y+ S+ RAR   + +ILM
Sbjct: 412 VMKRFRSRDCNILVATSVLEDGIDVPACHLVIRYDLPQSYRAYVHSKARARAKKAHYILM 471

Query: 526 LERGNLKQRNKLFDIIR---SERSVTDTALSRDPEACFLK----ACTYVKTKSYIVESTG 578
           +E  N +    L D+     +E+ +   +   +  A F          ++      E++ 
Sbjct: 472 VE--NERMDEFLVDLSHFHATEQILLSKSGYHNSVAEFFNHNEDMLNCIQAPYPSDETSN 529

Query: 579 ASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA--EEAYECELTLPSNAPFQ-TIVG 635
           +  +  +++++I+RYC  LPSD +    P+++ ++   + AY C L LP N+P + T++ 
Sbjct: 530 SYASLQNAISIINRYCAKLPSDCFTRLTPVWRIQNVFLDVAYICSLQLPINSPLRKTVLS 589

Query: 636 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPS-------VEEPSENNLISKKN--ESL 686
               +K  +K+   LEAC  LHQ   L+DH  P+        EE   N  + ++N  E+L
Sbjct: 590 QPMPSKVTAKRSAALEACRLLHQKKELDDHFYPTGKENLRLEEEEDYNADLEEENVPENL 649

Query: 687 PGAGTTKRKELH 698
           P  GTTKR++ +
Sbjct: 650 PRPGTTKRRQYY 661



 Score =  125 bits (314), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 132/505 (26%), Positives = 200/505 (39%), Gaps = 141/505 (27%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+A T     +  ++ERLE +GDS LKYA++ +L+  Y   HEG+LS  RS  V N 
Sbjct: 1240 SVILQAFTMSSANDGINLERLETIGDSFLKYAITTYLYCKYSSIHEGELSHLRSRQVSNL 1299

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPRR-WVAPGQL---SLRPVPCECGV-------------- 1161
             L++LG  +   G +  + F+P   W+ PG +   +L       G+              
Sbjct: 1300 HLYQLGKKKLFGGCMVATKFNPHENWLPPGYVIPDALEEALISSGIPLNYWNVVDLQGME 1359

Query: 1162 ---------------------------DTLEVPLDGKFF-TQDTKVVVGKPCDMGHRWMG 1193
                                          EV +DG  F  QD    V       H  + 
Sbjct: 1360 HMSSEQVKALVQEKSEQIMLRFGGKIPSVEEVAMDGNIFHAQDLPRFVPYNLLTQHS-IP 1418

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1253
             K+IADC EALIGAY    G   AL  M WLG+        V   I   S   + P I+ 
Sbjct: 1419 DKSIADCVEALIGAYLRACGPRGALLFMSWLGLK-------VLPVINEGSYGYWTPPISP 1471

Query: 1254 IKD------------------IESKIGYEFTVKFLLQEAITHASVQ-----------EF- 1283
            + D                   E KI Y+F  +  L +A +HAS             EF 
Sbjct: 1472 LVDQPLDIHVELDRMLAGFESFEEKICYKFNDRSYLLQAFSHASYYLNRLTDCYQRLEFL 1531

Query: 1284 -----------YCYQNLYKH------------------------------LQHCSTLLLS 1302
                       Y Y+NL +H                               +H S  L  
Sbjct: 1532 GDAVLDYLITRYLYENLPRHPPGALTDLRSALVNNTTFAVLAERYEFHRYFKHLSPSLNQ 1591

Query: 1303 QITEYVKSFPKPGETTD------SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIF 1356
             + +++K+  + G + +          ++ PK LGD+ ES+ GA+ +D+ ++L+ VWR++
Sbjct: 1592 IMDKFIKAQEENGHSINEEYYMIEAEDVEVPKVLGDVFESVAGAIYLDSHMSLNAVWRVY 1651

Query: 1357 KPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVG 1414
              ++   +      +P  P+REL+EL      F K      G      LR+ + DV+  G
Sbjct: 1652 YNMMKKEIDEFSKNVPKSPIRELLELETDRVKFGKAERLPDG-----RLRVTV-DVIGKG 1705

Query: 1415 --EGQERSRKAAKGKAASQLLKKLE 1437
              +G  R+ + AK  AA   L+ LE
Sbjct: 1706 TFKGIGRNYRIAKCTAAKYALRTLE 1730



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 3/103 (2%)

Query: 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197
           W +E+ K+ VLVMT  I L+ + K FL ++ +  +++D+CH+   N     ++  + + +
Sbjct: 6   WTEELGKSQVLVMTYSIFLEVIHKNFLKMNKLNLLILDDCHNVMNNEALKGVLTLYENAA 65

Query: 198 DN-KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFT 239
            +  P++ G+TAS V    +   M+    I+ LE+ L S + T
Sbjct: 66  SSVHPRILGLTASIV--NNICKPMELSQLITILETKLKSVIST 106



 Score = 41.6 bits (96), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 12/152 (7%)

Query: 903  DAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 958
            D +   D VV+  +  +     + + EI    + +S F    D++  TF  Y+  KYGI 
Sbjct: 836  DPRLFSDAVVMKWYRDQEHPQCFYVAEIFYELNPQSKF---PDNNYPTFEKYYRHKYGIQ 892

Query: 959  LIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVP 1018
            + +  QPLL +  +    N L              S  +TKK Q       ++LV     
Sbjct: 893  IQNLKQPLLDVDHTSARLNFLTPRYVNRKGVMLPTSSEHTKKTQRESLQQKQILVPELCS 952

Query: 1019 I-----SVVKSLYLLPSVMQRLESLMLASQLR 1045
            I     S+ +    LP ++ RL  L+LA QLR
Sbjct: 953  IHPFSASLWRQAVCLPCILYRLNGLLLAEQLR 984


>gi|240275433|gb|EER38947.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H143]
          Length = 896

 Score =  130 bits (326), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 24/220 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQL++FE AK  N IAVL+T             D A    S    ++  FL  +V L
Sbjct: 93  PREYQLELFEKAKAANIIAVLDTA------------DRA----SGNPPRISFFLVDSVTL 136

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V+QQ  V++ + D  ++++ GA   D W  + W+K  +KN ++V T ++L   L ++F+ 
Sbjct: 137 VYQQAAVLKANIDQNIDKFCGAMQTDLWSKETWEKHFSKNMIIVCTAEVLYQCLLRSFIR 196

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHK---SDNKPKVFGMTASPVVRKGVSSAMDC 222
           ++ +  ++ DE HHA   HPY +I+K+FY +   +  +PK+FGMTASP     V + +D 
Sbjct: 197 MEQINLLIFDEAHHAKKEHPYARIVKDFYLRRPETQKRPKIFGMTASP-----VDAKVDV 251

Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ 262
                 LE+ LDSQ+ T  +   +   +    E    YD+
Sbjct: 252 AKAAKNLETLLDSQIATASNLDALRQAIARPTEQIWVYDK 291



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 90/188 (47%), Gaps = 26/188 (13%)

Query: 497 IRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSER----------- 545
           I FDL  T+  YIQSRGRAR  NS +  M+ER NL   + + +  R+E            
Sbjct: 422 IVFDLSLTMIQYIQSRGRARHSNSIYAHMVERDNLIHASCIQEAQRAEHIMRRFCEALPE 481

Query: 546 ------SVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPS 599
                 S  D  ++ D E  +         KS+ V STGA++T  SS+ ++  Y   L  
Sbjct: 482 DRIIRGSSDDLGMNLDKERYY---------KSFTVHSTGATLTYPSSLVVLAHYASSLQY 532

Query: 600 DKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQV 659
           +K  +P+  +  +  + A+ CE  LP  +PF+ + G  S  K  ++Q    E C  L + 
Sbjct: 533 EKETSPQVNYFIERIDGAFVCEAILPEKSPFRGLTGKPSARKLHARQSAAFETCLMLRKN 592

Query: 660 GALNDHLL 667
           G L+DH L
Sbjct: 593 GILDDHFL 600


>gi|195109134|ref|XP_001999145.1| GI24348 [Drosophila mojavensis]
 gi|193915739|gb|EDW14606.1| GI24348 [Drosophila mojavensis]
          Length = 2256

 Score =  130 bits (326), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 136/526 (25%), Positives = 207/526 (39%), Gaps = 153/526 (29%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1727 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1786

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP---------GQLSLRPVP------------- 1156
             L++LG  ++L  Y+  + F+P   W+ P           L    +P             
Sbjct: 1787 NLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIK 1846

Query: 1157 -------CECGVDTLE-----VPLDGKFFTQ------DTKVVVGKPCDMGHRWMGSKTIA 1198
                   CE   +  E       +D    TQ      D+       C + +  +   +I 
Sbjct: 1847 NLSSVQICELVREKAEALGLGANVDQPIATQQHADLDDSNETNDFSCFIPYNLVSQHSIP 1906

Query: 1199 D-----CAEALIGAYYVGGGLIAALYMMKWLGI------------------------DAD 1229
            D     C EALIGAY +  G   AL  M WLGI                        DA+
Sbjct: 1907 DKSIADCVEALIGAYLIECGPRGALLFMAWLGIRVLPYQLEPAAADIEQRKPGSTKPDAN 1966

Query: 1230 LEVSLVDDCIT-RASLRSYVPR--------INEIKDIESKIGYEFTVKFLLQEAITHASV 1280
              V++  D  T R+ L  + P         ++  ++ E+ +GY F  +  L +A+THAS 
Sbjct: 1967 NMVTVYGDWPTPRSPLLHFAPNAHRELEELLSGFEEFEASLGYTFRDRSYLLQAMTHASY 2026

Query: 1281 QEFY---CYQNL------------------------------------------------ 1289
                   CYQ L                                                
Sbjct: 2027 TPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRH 2086

Query: 1290 --YKHLQHCSTLLLSQITEYVKSFPKPGE------------TTDSGPSMKAPKALGDLLE 1335
              +K+ +H S  L   I  +V+   + G               D    ++ PKALGD+ E
Sbjct: 2087 GFHKYFRHLSPGLNDVIDRFVRIQQENGHCISEEYYLLSEEECDDAEDVEVPKALGDVFE 2146

Query: 1336 SIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCT 1393
            SI GA+ +D+ ++LD VW++F  ++ P +      +P  P+REL+EL      F K    
Sbjct: 2147 SIAGAIFLDSNMSLDVVWQVFSNMMKPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKL 2206

Query: 1394 LKGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
              G  V   +     DV   G   G  R+ + AK  AA   L++L+
Sbjct: 2207 ADGRRVRVTV-----DVFCKGTFRGIGRNYRIAKCTAAKCALRQLK 2247



 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 22/143 (15%)

Query: 576 STGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK----YKSAEEAYECELTLPSNAPFQ 631
           STGASV   +++ L+++YC  LPSD +     +++     +     Y+  L LP N+P +
Sbjct: 820 STGASVDLSTAIALVNKYCARLPSDTFTKLTALWRCASVVRDGVTLYQYTLRLPINSPLK 879

Query: 632 -TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSE 675
             I+G     + L+++L  L+AC +LH++G L+D L P       ++E        EP +
Sbjct: 880 HDIIGLPMPTQTLARRLAALQACVELHKIGELDDQLQPIGKEGFRALEPDWECFDLEPED 939

Query: 676 NNLISKKNESLPGAGTTKRKELH 698
             ++ + +E  P  GTTKR++ +
Sbjct: 940 EQIVQQNDE--PRPGTTKRRQYY 960



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%)

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
           L  + Q++VL+ FR    N+L  T V+EEG+ VP C+ VIR+D P T  SY+Q +GRAR 
Sbjct: 544 LEHRRQEDVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVIRWDPPTTYRSYVQCKGRARA 603

Query: 518 HNSQFILML 526
             +  I+++
Sbjct: 604 APAYHIMLV 612



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 20/195 (10%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F PR +Q+++   A  RNTI  L   + K  IA+ L++++++    NG  K+ ++L   +
Sbjct: 15  FTPRDFQVELLATAFERNTIICLGHRSSKEFIALKLLQELSRKGLRNG--KVSVYLTNQI 72

Query: 104 HLVHQQYDVIRVH-TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
              +     +  H TD +V +    +G+      CW        V +  P   L  L+  
Sbjct: 73  DAENTSIYTMLTHLTDLKVWQEQRDQGISA--DHCW----TDYHVSIHKPTSFLSLLKAG 126

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKSDNKPKVFGMTASPVVRKGVSSAM 220
            L L  V  IV+++CH +        I +EF    KS ++P++ G+        G   + 
Sbjct: 127 NLLLSSVQLIVLEDCHDSAVYRSILPIFEEFILPAKSADRPRILGLA-------GPLHSA 179

Query: 221 DCEGQISELESTLDS 235
           +CE  + EL + LD+
Sbjct: 180 NCE--LEELHAMLDT 192



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 14/159 (8%)

Query: 901  SVDAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYG 956
            S DA+  +D VV+  +  +     + + EI  + S  S F G   D  +TF +Y+  KYG
Sbjct: 1130 SFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG---DHYRTFKHYYLVKYG 1186

Query: 957  IVLIHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPE 1010
            + + +  QPLL +  +    N L     N  G     S + +K        Q  + + PE
Sbjct: 1187 LTIQNAAQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPE 1245

Query: 1011 LLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEIN 1049
            L      P S+ ++   LP ++ R+  L+LA  +R++++
Sbjct: 1246 LCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVS 1284


>gi|195391256|ref|XP_002054279.1| GJ24359 [Drosophila virilis]
 gi|194152365|gb|EDW67799.1| GJ24359 [Drosophila virilis]
          Length = 2250

 Score =  129 bits (325), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 134/529 (25%), Positives = 207/529 (39%), Gaps = 156/529 (29%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1718 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1777

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP---------GQLSLRPVP------------- 1156
             L++LG  ++L  Y+  + F+P   W+ P           L    +P             
Sbjct: 1778 NLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELEKALIEAKIPTQHWKLVDLLDIK 1837

Query: 1157 -------CECG---------VDTLEVPLDGKFFTQ-----DTKVVVGKPCDMGHRWMGSK 1195
                   CE           V ++E P   +  T      D+       C + +  +   
Sbjct: 1838 NLSSVQICEMVREKAESLGLVGSVEQPAAAQQLTHNANLDDSNETNDFSCFIPYNLVSQH 1897

Query: 1196 TIAD-----CAEALIGAYYVGGGLIAALYMMKWLGI------------------------ 1226
            +I D     C EALIGAY +  G   AL  M WLG+                        
Sbjct: 1898 SIPDKSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPYKLEPTAAAIEQRMPGSTKP 1957

Query: 1227 DADLEVSLVDDCIT-RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITH 1277
            D +  +++  D  T R+ L  + P  N          ++ ES +GY F+ +  L +A+TH
Sbjct: 1958 DLNNMITVYGDWPTPRSPLLHFAPNANAELEHLLSGFEEFESSLGYTFSDRSYLLQAMTH 2017

Query: 1278 ASVQEFY---CYQNL--------------------------------------------- 1289
            AS        CYQ L                                             
Sbjct: 2018 ASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLA 2077

Query: 1290 -----YKHLQHCSTLLLSQITEYVKSFPKPGETT------------DSGPSMKAPKALGD 1332
                 +K+ +H S  L   I  +V+   + G               D    ++ PKALGD
Sbjct: 2078 VRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHIISEEYYLLSEEECDDAEDVEVPKALGD 2137

Query: 1333 LLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKE 1390
            + ESI GA+ +D+ ++LD VW+++  ++ P +      +P  P+REL+EL      F K 
Sbjct: 2138 VFESIAGAIFLDSNMSLDVVWQVYSNMMKPEIEQFSNSVPKSPIRELLELEPETAKFGKP 2197

Query: 1391 NCTLKGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
                 G  V   +     DV   G   G  R+ + AK  AA   L++L+
Sbjct: 2198 EKLADGRRVRVTV-----DVFCKGTFRGIGRNYRIAKCTAAKCALRQLK 2241



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 79/143 (55%), Gaps = 22/143 (15%)

Query: 576 STGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK-YKSAEEA---YECELTLPSNAPFQ 631
           STGASV   +++ L+++YC  LPSD +     +++  +S  +    ++  L LP N+P +
Sbjct: 811 STGASVDLSTAIALVNKYCARLPSDTFTKLTALWRCARSVRQGVVLFQYTLRLPINSPLK 870

Query: 632 -TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSE 675
             IVG     + L+++L   +AC +LH++G L+D L P       ++E        EP +
Sbjct: 871 HDIVGLPMPTQTLARRLAAFQACVELHKIGELDDQLQPIGKEGFRALEPDWECFELEPED 930

Query: 676 NNLISKKNESLPGAGTTKRKELH 698
            +++ + +E  P  GTTKR++ +
Sbjct: 931 EHIVQQNDE--PRPGTTKRRQYY 951



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 13/127 (10%)

Query: 412 STQVLC-IIFVERIIAAKVVERFV----KKVPFLTHLTVAYLTGSTTSVDALTPK----- 461
           +++ LC +I+  +   A+V+   +    ++ P L  L   Y T       A  PK     
Sbjct: 481 TSETLCALIYCNQNHTARVLFELLAELSRRDPDLKFLRCQYTTDRVAD-PATEPKEAEQE 539

Query: 462 --VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
              Q++VL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   
Sbjct: 540 HRRQEDVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAP 599

Query: 520 SQFILML 526
           +  I+++
Sbjct: 600 AYHIMLV 606



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 20/195 (10%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F PR +Q+++   A  RNTI  L   + K  IA+ L++++++  + NG  K+ ++L+  +
Sbjct: 15  FTPRDFQVELLASAFERNTIICLGHRSSKEFIALKLLQELSRPGRRNG--KVSVYLSSQI 72

Query: 104 HL-VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
                  Y ++   TD +V +    + V    + CW        V +  P   L  L+  
Sbjct: 73  DAEATSMYTMLTHLTDLKVWQEQPDQHVPS--NHCW----TDYHVSIHKPSTFLSLLQSG 126

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKSDNKPKVFGMTASPVVRKGVSSAM 220
            L L  +  IV+++CH ++       I ++F    K  ++P++ G+        G   + 
Sbjct: 127 DLLLSSIQLIVLEDCHDSSVYRSILPIFEDFILPAKPSDRPRILGLA-------GPLHSA 179

Query: 221 DCEGQISELESTLDS 235
           DCE  + EL + LD+
Sbjct: 180 DCE--LEELNAMLDT 192



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 14/158 (8%)

Query: 903  DAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 958
            DA+  +D VV+  +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ 
Sbjct: 1123 DAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLT 1179

Query: 959  LIHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELL 1012
            + +  QPLL +  +    N L     N  G     S + +K        Q  + + PEL 
Sbjct: 1180 IQNTAQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELC 1238

Query: 1013 VRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINC 1050
                 P S+ ++   LP ++ R+  L+LA  +R++++ 
Sbjct: 1239 TVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSA 1276


>gi|390332898|ref|XP_790894.2| PREDICTED: endoribonuclease Dicer-like [Strongylocentrotus
           purpuratus]
          Length = 1815

 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 152/300 (50%), Gaps = 23/300 (7%)

Query: 18  PNPPDMGSSGHDHAVDGPSSSTNS------INFIPRIYQLKVFEVAKRRNTIAVLETGAG 71
           P+ P MG    D    G SS T+       ++F PR YQL++ E A  +NT   L++G  
Sbjct: 5   PSSP-MGLEVIDVETPGGSSVTSQKEYTPILSFTPRHYQLELLETALEQNTTVCLQSGTE 63

Query: 72  KTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAK 128
           KT +AVMLIK+++ +++    +G K+  IFL  +   + +  +VI  HTD  V+EY  + 
Sbjct: 64  KTFLAVMLIKELSGSVRLRLEDGGKR-TIFLVNSESYLSEYGNVIHTHTDLNVKEYRNSD 122

Query: 129 GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYT 187
            +  WD   WQ EI    V VM  +I L  L+ +++ L ++  +++DECHH   + HPY 
Sbjct: 123 KMISWDRTRWQDEIEHCHVAVMDSEIFLKLLQMSYVGLSMLNLLILDECHHTLQHLHPYH 182

Query: 188 KIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEM 246
           +IM  F  +  D++P++ G+T S  + KG       E  I  LE++L S+     + T +
Sbjct: 183 QIMLAFKQYPRDDRPRILGLTES--ILKGDFKPCALEEHIDMLETSLQSKAKIATNLTSI 240

Query: 247 EVFVPSAKES---CRFYDQ-----SKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKD 298
             +    KE+   CR Y+      SK       G  +++  ++       +G  ++C +D
Sbjct: 241 SKYGTKPKEAVIVCRKYEDCIELVSKLSKLLTDGLDQLNQFEYSFKARDFEGELVDCKRD 300



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 164/328 (50%), Gaps = 47/328 (14%)

Query: 410 GKSTQVLC-IIFVERIIAAKVVERFVKKVP-------FLTHLTVAYLTG--STTSVDALT 459
           G+ST  LC IIFVE+   A V+ R  KK+        FL    +A  +G   TT   A+ 
Sbjct: 469 GRSTTNLCGIIFVEQRYTAVVMSRLFKKLSKRDPNLHFLLCSCIAMGSGRLGTTKKSAIQ 528

Query: 460 PKVQK----EVLESFRGGKVNLLFATDVIEEGMHVPNCS---YVIRFDLPKTVSSYIQSR 512
            + Q+    EVL  FR  +VN+L AT  +E+G+ +P C+    V+RFD P +  SY+QS+
Sbjct: 529 VQNQRRKHEEVLRKFRRREVNVLVATSSVEDGVELPRCNGCNLVVRFDRPTSYQSYMQSK 588

Query: 513 GRARQHNSQFILMLERGNLK------QRNKLFDIIRSERSVTDTALSRDPEACFLKACTY 566
            +AR   S +++++   +++      Q  + F+ + + +S   T     P+   L     
Sbjct: 589 AKARAPTSHYLMLIYEPDVQLFLGDVQCYQEFERVLNRKSKGKT----QPQEEVLDLLVA 644

Query: 567 VKT-KSYIVE----STGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYK----SAEEA 617
            K   +YI +    S  AS+TT  ++ +I+RYC  LPSD +       K K         
Sbjct: 645 DKQMPAYIPKNEEGSPRASMTT--AIQIINRYCAKLPSDVFTHLTASCKMKERKGDVSPE 702

Query: 618 YECELTLPSNAPFQT-IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEE 672
           ++  L LP N+P +  I GP  + K  +   V ++A   LH+ G LND+L P    S+ +
Sbjct: 703 FQATLQLPINSPIRKPITGPWMKRKKWATMAVAVKAATILHKAGELNDYLQPMGKESILK 762

Query: 673 PSEN--NLISKKNESLPGAGTTKRKELH 698
            ++N  N +    ++ P  GTTK+++ +
Sbjct: 763 ATDNAFNHLFADGQTRP--GTTKKRQYY 788



 Score = 98.2 bits (243), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 136/345 (39%), Gaps = 116/345 (33%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            ++IL++LT     + F++ERLE+LGDS LK AV+ +L+ TYP   EG+LS  RS  V N 
Sbjct: 1256 TIILQSLTMSNSSDGFNLERLEMLGDSFLKQAVTAYLYCTYPHLDEGKLSFLRSKQVSNF 1315

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL---SLRPVPCE----------------- 1158
             L+ LG  + L   ++ S FDP   W+ P  L   S RPVP E                 
Sbjct: 1316 NLYCLGDKKALAHKMQVSLFDPSINWLPPCLLVKESSRPVPKEETETDPDAGFVIDTWDP 1375

Query: 1159 ------------------CG-----------VDTLEVPLDGKFFTQDTK------VVVGK 1183
                              C            +D  +      FF ++ K        VG 
Sbjct: 1376 STVEGVDDFDDDDFDSDQCWEENSDDFSDEEIDETKAECPDDFFAREEKDKEQWSFSVGD 1435

Query: 1184 PCDM-GHRWMGSKT-----------------------IADCAEALIGAYYVGGGLIAALY 1219
            P D+ G  + G+KT                       IADC EALIG Y V  G  +AL 
Sbjct: 1436 PDDVPGLTYTGAKTQDLGSVPQLPYEIHTQHSMSDKSIADCVEALIGCYLVSCGFRSALL 1495

Query: 1220 MMKWLGID---------------------ADLEVSLVDDCITRAS---LRSYVPRINEI- 1254
            +M W+G+D                     ADL VS +   + +     LRS VP   ++ 
Sbjct: 1496 IMAWMGLDVLPTIDGQSNKRNDQSSDLPAADLPVSCLYGYLKQPESPLLRS-VPNAEDVL 1554

Query: 1255 -------KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
                      E  I Y F  +  L +A TH+S        CYQ L
Sbjct: 1555 QHQLVGYDGFEKTINYRFRDRAYLLQAFTHSSYHRNSITDCYQRL 1599



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 15/134 (11%)

Query: 1315 GETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP-- 1372
            GE  +S   ++ PKALGD+ ES+ GA+ +D+ ++L+ VW+++ P++   +     +LP  
Sbjct: 1691 GEQEESE-DIEVPKALGDIFESVAGAIYLDSGMSLNAVWKVYYPMMKQQIEQYASDLPIS 1749

Query: 1373 PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKA 1428
            P+REL+E+      F     T+ G+      R+    V +VG+GQ     R+   AK  A
Sbjct: 1750 PVRELLEMEPETARFGPPEKTIDGKT-----RVT---VNVVGKGQFKGIGRNYHIAKATA 1801

Query: 1429 ASQLLKKLEVCEKR 1442
            A   L+ L+   K+
Sbjct: 1802 ARFALRHLKSQPKK 1815



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 9/148 (6%)

Query: 907  LKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHP 962
            L D VV  I+      + Y + +I+ +    SPF     +  +TFV+Y+ E+Y I + + 
Sbjct: 970  LADAVVTPIYRNIDQPQRYFMADILYDLPVTSPFPS---EKYETFVDYYFERYDIQISNF 1026

Query: 963  GQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTK-KPQMHVHMPPELLVRVDVPIS 1020
             QPL+ +    +  NLL   + +  G      +G N K   Q   ++ PEL     +P S
Sbjct: 1027 QQPLVDVDCMSSRLNLLTPRYLNHKGKALPISTGQNKKGNLQKKQYLVPELCYIYPIPAS 1086

Query: 1021 VVKSLYLLPSVMQRLESLMLASQLREEI 1048
            + +    LPS++ RL +L++A +LR ++
Sbjct: 1087 LWRKAVCLPSILYRLNALLIAEELRVQV 1114


>gi|302896162|ref|XP_003046961.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
           77-13-4]
 gi|256727889|gb|EEU41248.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
           77-13-4]
          Length = 1452

 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 125/215 (58%), Gaps = 12/215 (5%)

Query: 36  SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD-IAQAIKSNGF-- 92
           +S +  I   PR YQ+++FE AK++NTI VL TG GKT+IA +L++  + Q ++      
Sbjct: 49  TSESRKIIATPREYQIELFERAKQKNTIVVLPTGTGKTLIAALLLRHYLEQEMEDRAIGK 108

Query: 93  -KKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYG-AKGVDEWDSQCWQKEINKNDVLV 149
            KK+  FL   V L +QQY V+  +  +  + +++G  KG+     Q W ++ ++N V+V
Sbjct: 109 PKKVAFFLVEKVALCYQQYAVLNCNLGEHPITKFWGNMKGMVR-KKQYWDQQFSENMVVV 167

Query: 150 MTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-SDNKPKVFGMTA 208
            T QIL+D L   F+ +  +  ++ DE HHA  +HPY +IM+  Y +    +P++ GMTA
Sbjct: 168 CTAQILVDCLNDGFIKMSQINLLIFDEAHHAKKDHPYARIMRNHYIRYQGERPRILGMTA 227

Query: 209 SPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDK 243
           SPV     S   D +    ELE+ L S++ T+ ++
Sbjct: 228 SPV----DSQTKDVKAAALELETFLCSEIATVSNE 258



 Score =  126 bits (317), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 144/283 (50%), Gaps = 14/283 (4%)

Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAY-LTGSTTSVD 456
           KLHE+L    +F + +   CI+FVE+   A ++    ++        VAY + GS ++  
Sbjct: 368 KLHEIL--LHAFTRDSTKRCIVFVEKRHTAWLLSDLYQQQGMRIPGMVAYYMIGSQSASS 425

Query: 457 A---LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
               ++ + Q   L+ F+ G +N LFAT V EEG+ VP+C  VIRFDL  +V  Y+QS+G
Sbjct: 426 THSNMSHRDQVVTLQKFKRGSINCLFATTVAEEGIDVPDCDLVIRFDLYNSVIQYLQSKG 485

Query: 514 RARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALS----RDPEACFLKACT--YV 567
           RARQ NS++I MLE GN+ Q   L    R   ++    LS    R  E   + A     +
Sbjct: 486 RARQSNSRYITMLEEGNMGQLRSLKQAERDSTALQKFCLSLPADRKLEDDVVDAVQDELL 545

Query: 568 KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSN 627
             K Y + STGA +T   S++++ +Y   +      + K  F        +  ++ LP  
Sbjct: 546 VQKVYEIPSTGARLTFAHSMDVLSKYAASITPG--VSSKVEFTVTKLGPKFIADVILPDA 603

Query: 628 APFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSV 670
           +P + + G   R+K L+K     EAC KL +   ++ HL P++
Sbjct: 604 SPLKAMSGFPQRSKLLAKYSAAFEACVKLIKDKHIDGHLQPTL 646



 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 107/438 (24%), Positives = 154/438 (35%), Gaps = 128/438 (29%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P+ V   +   P+++ R+++ ++         C   +  IP  L LEA+T         
Sbjct: 927  IPLDVAFMVMAFPAIIHRIDAALITLDA-----CAMLDLPIPPVLALEAMTKDSDNSGEH 981

Query: 1068 -----TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
                         + ERLE LGDS LK A +  LF   P+  E      R   +CN  L 
Sbjct: 982  DEEQVNFQPGMGSNYERLEFLGDSFLKMATTISLFTLIPESDECGYHVERMILICNQNLF 1041

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPL-DGKFFTQDTKVVV 1181
                DRKL  YIR  AFD R W                    ++PL  GK          
Sbjct: 1042 NHAVDRKLHEYIRSKAFDRRSWYP------------------DLPLKKGK---------- 1073

Query: 1182 GKPCDMGHRWMGSKTIADCAEALIGAYYVGG---------------------------GL 1214
                +M H  +  K+IAD  EALIGA Y+ G                             
Sbjct: 1074 APKTEMRHN-LADKSIADVCEALIGAAYLSGKGGSMDLAVKAVTRMVKSKNHKMEKFEDY 1132

Query: 1215 IAALYMMKWLGIDADLEVSLVDDCITRAS---------LRSYVPRINEIKD-IESKIGYE 1264
             AA  M  W   +A++    + DC+  A          LRS     +   D + +    E
Sbjct: 1133 FAAFKMPAWQQAEANVNQRRLVDCVADAVGYRFKWPALLRSAFKHPSWPYDPVPNYQRLE 1192

Query: 1265 FTVKFLLQEAITHASVQEF-----------------------YCYQ-NLYKHLQHCSTLL 1300
            F    LL  AI     Q F                        C + +L+KHL   ++ L
Sbjct: 1193 FLGDALLDMAIVDNLFQRFPQADPQWLTEHKMAMASNQFLGCLCVKLDLHKHLTSTTSSL 1252

Query: 1301 LSQITEYVKSFPKPGETTDSGPSMKA----------------PKALGDLLESIVGAVLID 1344
            + QI+ Y        E  D+    KA                PKA  D++E++VGA+ +D
Sbjct: 1253 IGQISSYASELELAEE--DARQEAKANKTAMRKDFWLRASAPPKAFADVMEALVGAMFVD 1310

Query: 1345 TKLNLDEVWRIFKPILSP 1362
             K +   V   F   + P
Sbjct: 1311 AKYDYTVVRNFFTRFIEP 1328


>gi|50897083|dbj|BAD34722.1| Dicer-related RNase III protein Dcr1p [Tetrahymena thermophila]
          Length = 1450

 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 142/638 (22%), Positives = 267/638 (41%), Gaps = 142/638 (22%)

Query: 68  TGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI-------------- 113
           TG GKT+++ M    IAQ   S      + FLA  V+LV QQY+                
Sbjct: 1   TGTGKTLVSQM----IAQYTLSKFKGSKVAFLANQVNLVEQQYNNFLTYQRSIEEYLVKQ 56

Query: 114 ----RVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIV 169
                ++ +  +  ++G   +D W+   WQK + ++ ++  + QI L+ LR+    L   
Sbjct: 57  NLSEEINQNINISFFHGKMNLDFWNRSFWQKNVEQSQIIFFSSQIFLNGLRRGHFQLTQF 116

Query: 170 CFIVIDECHHATGNHPYTKIMKEFYH---KSD----NKPKVFGMTASPVVRKGVSSAMDC 222
             I+ DECH+ +  H +++IMKEFY    K+D    N P + G++A+P+ + G     + 
Sbjct: 117 KLIIFDECHNTSKEHAFSQIMKEFYFQVKKNDIVLKNTPNIIGLSATPITQ-GNKGNFNV 175

Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY-------DQSKFCGSDLKGKLE 275
             ++ +L   LD Q F   D  ++   + + K++ +FY       D      +++KG   
Sbjct: 176 RREMLKLAHNLDCQ-FINYDLQKVYAQLRNIKQTEKFYEVNMNENDYQYIESNNIKG--- 231

Query: 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLR----------KQLSDYHAKILYCLDELG 325
             + + D  L +LQ      Y ++ + +K L+          K  +    KI+  L+E  
Sbjct: 232 --FDQADKVLYELQEQ----YPELKELYKQLQALSRLDNLASKAFTQILRKIINLLEEYI 285

Query: 326 LICAYE----AVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLD 381
           +I  Y+     V+  +  +L+  +   I    +L  K  LE++L           + +  
Sbjct: 286 IILIYQIGVYVVQFFIFDILQELKGVNITAPKTLCMKQQLEDILQ----------QFYEI 335

Query: 382 FGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT 441
           F   Y+       I+  L    Q+ LS    ++ + +IF    +  K V +F++ V F  
Sbjct: 336 FRAKYNN------INNDLSNKSQVLLSILSKSEGISLIFCNSKVVVKYVTKFIQSV-FQN 388

Query: 442 HLT----VAYLTGSTTS-------------VDALTP------------------------ 460
             +      Y+ G T+              ++++ P                        
Sbjct: 389 SNSDQKCCEYIMGQTSQNKKDEEDDNNLKIINSINPYEIQNLKSQSVQQAQNIIQQEKQF 448

Query: 461 -----------KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
                        Q++++E FR  +  +L +T V+EEG  +P+C+ VI F    +   YI
Sbjct: 449 SIKFYALKQKYSEQQKIVERFRNKQFKILVSTSVVEEGFDIPSCNIVIAFSKIISQRQYI 508

Query: 510 QSRGRARQHNSQFILMLERGN-----LKQRNKLFDIIRSERS----VTDTALSRDPEACF 560
           Q +GRAR  NS+F  ++   N     L+    + D I+ E      +T    S++ E   
Sbjct: 509 QMKGRARAENSKFYALVAVYNNNKIKLQNHQIVSDQIKQEYYSLSLLTQKQFSQEKEKHQ 568

Query: 561 LK---ACTYVKTKSYIVESTGASVTTDSSVNLIHRYCE 595
           +      +    +++I+  T A+V T     +++++C+
Sbjct: 569 VNDEDDTSMENYENFIIPETNANVNTFWVKEIVNQFCQ 606


>gi|444841769|gb|AGE12617.1| Dicer 2 [Nilaparvata lugens]
          Length = 1448

 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/395 (29%), Positives = 194/395 (49%), Gaps = 42/395 (10%)

Query: 299 MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358
           M++ +K L K+L++    I Y ++ LG   AY+A  + +  +L+ ++     R+ +   +
Sbjct: 176 MEENNK-LNKKLANMIVDIKYQMENLGAYGAYKAA-LAMMILLERKKRSAQLRKHAAAFQ 233

Query: 359 YFLEEVLHVIGSALPLADKIFLDFGFDYS-KAVDLGYISTKLHELLQLFLSFGKSTQVLC 417
           Y        + + L L  KI  D    Y  +   + ++S K+ +LL+LF  F ++ + L 
Sbjct: 234 Y--------LCTMLTLVRKISFDVLSKYEGEERIIRFVSNKVLKLLELFKGFKETDKAL- 284

Query: 418 IIFVERIIAAKVVERFVK--KVPFL-THLTVAYLTG--STTSVDALTPKVQKEVLESFRG 472
            IFV R  + K ++  ++  K+P + +   V Y T   + T    L  KV K+VL+ F G
Sbjct: 285 -IFVTRRFSCKCLQYILEDLKLPNVKSDFIVGYNTNPFNDTREGLLEKKVNKKVLKRFNG 343

Query: 473 GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK 532
           G  N+L A+DV+EEG+ V  C+ VI+FD P T+ SYIQS+GRAR   S+F +M E  + K
Sbjct: 344 GDTNVLIASDVLEEGIDVQTCNTVIKFDPPTTMRSYIQSKGRARTRQSKFYIMTEAKDYK 403

Query: 533 QRNKLFDIIRSERSVTDTALSRDPEACFLK---------ACTYVKTK---SYIVESTGAS 580
              K+    R E     T L  +    FL+         A +  KT     Y +   G  
Sbjct: 404 VEGKINKFERLE-----TKLKHELVGKFLERSLPSEKELANSIFKTTIKPFYPLGPDGPK 458

Query: 581 VTTDSSVNLIHRYCEMLPSDKYYTPKPIF------KYKSAEEAYECELTLPSNAPFQTIV 634
           +   + + LI+RYC  L  D++ T  P +      K    E      L LP ++P + ++
Sbjct: 459 IEGSTPIALINRYCMSLDCDRFSTLTPFWWKEVSKKNGFNENNIVVYLQLPISSPVRDVI 518

Query: 635 GPTS-RNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
              +  N  L+K+   L+AC+ L+    L+D +LP
Sbjct: 519 KSDAFPNVELAKRSAALKACKLLYDSRELDDKMLP 553



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 132/303 (43%), Gaps = 53/303 (17%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
             L+ LT     + F++ERLE LGDS LKYAVS  LF+ +P+  EGQL+  +   + N  L
Sbjct: 1038 FLQVLTAASAHDIFNLERLETLGDSFLKYAVSLLLFIRFPELSEGQLTMIKGKVIGNRNL 1097

Query: 1122 HKLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPC---ECGVDT---LEVPLD----- 1169
               G  + L   I+   F+    W+APG    R V     E  ++     E+PL      
Sbjct: 1098 FYCGEQKGLGSIIKAVEFNTESDWIAPGFCVDRTVQNLFRELNINPRYLYEIPLSRDEIE 1157

Query: 1170 -GKFFTQDTKVVVGKP---------CD------MGHRWMGSKTIADCAEALIGAYYVGGG 1213
             GK   +   ++  K          C+      +  + + +KT++D  EAL+G Y    G
Sbjct: 1158 CGKLSPRTKDIIEEKLEEWEEDLDYCNYSNAHFISQQVISNKTVSDSVEALLGLYIQSYG 1217

Query: 1214 LIAALYMMKWLG-IDADLEVSLVDDCITRASLRSYVP--------RINEIKDIESKIGYE 1264
            L     M++WL  ID  L   +  D  T+  +   +          I+    +E  I Y+
Sbjct: 1218 LEKGFDMLRWLKVIDPKL---ITPDVYTKKKVEPTILFKGGQIDFHIHHPDYLEKLINYK 1274

Query: 1265 FTVKFLLQEAITHASVQEFYCYQNL---YKHLQHCSTLLL-----SQITEYVKSFPKPGE 1316
            F  +  L +A++H + Q      N+   Y+ L+     +L     + + EY  +   PGE
Sbjct: 1275 FKNRAFLLQALSHPTYQP----NNITPTYQRLEFLGDAILDFLVTTHMYEYCDNL-TPGE 1329

Query: 1317 TTD 1319
             TD
Sbjct: 1330 LTD 1332



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 6/103 (5%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFL 99
           F+ R YQ ++  +A + N I  L TG+GKT +A M+IK    DI + +   G  K   FL
Sbjct: 26  FVARDYQDELLPLAVQNNCIIYLPTGSGKTFLATMIIKHFGADIEKKLSEGG--KRAFFL 83

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEI 142
             TV LV QQ   I+  T F V EY G  G D + +   Q+ +
Sbjct: 84  VNTVQLVEQQAQSIKRQTTFTVGEYTGQTGCDLYSTDPQQEMV 126



 Score = 42.0 bits (97), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 13/147 (8%)

Query: 908  KDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV--LIH 961
            K+ VV+  + G    + Y + ++  N +A S F      D  T+  YF  KY  V  L  
Sbjct: 758  KNSVVIPWYRGFLPRQAYIVTDLSKNETALSDFPSG---DYPTYEKYFVTKYANVEKLYS 814

Query: 962  PGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV 1021
              +PLL ++      N L        S + +      ++ +    + PEL VR  VP + 
Sbjct: 815  AQKPLLEVRALSRRLNCL----RPRHSVQATSKRKKKQEEEFEESLVPELCVRCAVPAAY 870

Query: 1022 VKSLYLLPSVMQRLESLMLASQLREEI 1048
                 LLPS + R+ +L+LA +LR  I
Sbjct: 871  WLKATLLPSCVHRITALLLADELRVTI 897


>gi|116788280|gb|ABK24820.1| unknown [Picea sitchensis]
          Length = 330

 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 145/308 (47%), Gaps = 62/308 (20%)

Query: 1188 GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSY 1247
            G+R M +K +AD  EALIGA    GG   AL  +KWLG+D D+   +     TR     +
Sbjct: 20   GYRMMKTKNVADVVEALIGACLETGGETVALSFVKWLGMDIDIPQEMP---FTRKLDTGF 76

Query: 1248 VPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE------------------------- 1282
            V  +N ++ +ES + Y F V  L+ E++THAS +E                         
Sbjct: 77   VSNVN-VRYLESLLKYSFRVHTLVVESVTHASYKEPSFSGCYQRLEFLGDAVLDYLITLY 135

Query: 1283 FY----------------------CYQ------NLYKHLQHCSTLLLSQITEYVKSFPKP 1314
            FY                      CY       NL++ L+H S+ L +QITE+ K     
Sbjct: 136  FYKTYPGLSPGLLTDLRSAAVNNDCYAQAAVKCNLHQQLRHASSELHNQITEFAKLISSS 195

Query: 1315 GETTD-----SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKL 1369
              + D     +   +  PK LGDL+ESI GAVL+D++ +   VW   KP+L P+VTP  +
Sbjct: 196  SASGDHFFGWTTTEVAVPKVLGDLIESIAGAVLVDSEFDTQLVWNAMKPLLEPLVTPKTI 255

Query: 1370 ELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAA 1429
            +  P+REL ELC    Y    + + +      ++ +++K    +   +  +++ AK  AA
Sbjct: 256  KYQPVRELQELCQKEFYTCCFDDSQEEGTSTVKVEVRVKGDSYIETCEASNKRTAKKLAA 315

Query: 1430 SQLLKKLE 1437
             ++LK L+
Sbjct: 316  EKVLKSLK 323



 Score = 42.4 bits (98), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 1060 SLILEALTTLGCCE-SFS--MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1116
            +L++E++T     E SFS   +RLE LGD+VL Y ++ + + TYP    G L+  RS AV
Sbjct: 97   TLVVESVTHASYKEPSFSGCYQRLEFLGDAVLDYLITLYFYKTYPGLSPGLLTDLRSAAV 156

Query: 1117 CNSTLHKLGTDRKLQGYIRDSA 1138
             N    +      L   +R ++
Sbjct: 157  NNDCYAQAAVKCNLHQQLRHAS 178


>gi|320590575|gb|EFX03018.1| rnase3 domain containing protein [Grosmannia clavigera kw1407]
          Length = 1246

 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 14/223 (6%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK---DIAQAIKSNGF-KKLIIFLAP 101
           PR YQ+++FE AK++N IAVL+TG+GKT+IA +L++   D     +S G   +L  FL  
Sbjct: 124 PRDYQVELFEKAKQKNVIAVLDTGSGKTLIAALLLRHMIDKELEDRSQGKPARLSFFLVD 183

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQILLDALR 160
            V LV QQ+ V+  +    V ++ G K    W S+  W   +  N  +V T  ILL  L 
Sbjct: 184 KVALVFQQHAVLECNLSHSVAKFSGDKVDLRWTSKSFWDDVLRDNMAIVCTADILLKCLH 243

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPV-VRKGVS 217
            +++ ++ +  ++ DE HH   NH Y +I+K+FY      N+PK+FGMTASPV  R  ++
Sbjct: 244 HSYVCMEQINLLIFDEAHHTKKNHAYARIIKDFYAHECPSNRPKIFGMTASPVDARTNIA 303

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY 260
            A +      ELE+ L S++ T+ +   +       KE    Y
Sbjct: 304 QAAE------ELEALLHSEIATVSNDLLLHSVAKPKKEWVLHY 340



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 129/330 (39%), Gaps = 58/330 (17%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------- 1067
            +P  +V   + +P ++ R+ES ++A +    I        I   L LEA+T         
Sbjct: 689  LPAEIVAMAFNIPVIIHRIESTLIALEATSVIGIP----RIRPELALEAVTKDCDNPDAQ 744

Query: 1068 -----TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
                         + ERLELLGDS LK A S  LF   P K E +   +R   +CN  L 
Sbjct: 745  DETPLNFQAGMGRNYERLELLGDSFLKLATSIALFTLVPDKDEFEYHVQRMCMICNRNLF 804

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPG-QLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVV 1181
                D KL+ YIR   FD R W  P  + + +    +   D    P      +Q+  V+ 
Sbjct: 805  NNALDMKLEEYIRSREFD-RTWYPPTIEEAGKSTDNDNYSDNTPAPP-----SQNGLVLQ 858

Query: 1182 -GKPCDM-GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCI 1239
             GK   +  H  +G KTIAD  EA+IGA           Y+  +   + DL V  V   +
Sbjct: 859  KGKRTQLPTHHPLGDKTIADVCEAMIGA----------AYLTTYEERNFDLAVQAVSAVV 908

Query: 1240 TRA--SLRSYVPRINEIK------------------DIESKIGYEFTVKFLLQEAITHAS 1279
                  ++SY       K                   I   +GY+F    LL+ A TH S
Sbjct: 909  KSKLHPMQSYAEYYTAYKPPGWQLCPSTAAQLHMAVSIAKDLGYQFRFPRLLRSAFTHPS 968

Query: 1280 VQEFYCYQNLYKHLQHCSTLLLSQ-ITEYV 1308
                Y     Y+ L+     LL   I +Y+
Sbjct: 969  YPRIYENLPSYQRLEFLGDALLDMAIVDYL 998


>gi|336386278|gb|EGO27424.1| hypothetical protein SERLADRAFT_446652 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1267

 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 194/445 (43%), Gaps = 60/445 (13%)

Query: 887  TGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKT 946
            T  + ++V  LAN + DA  ++D  V    T R Y +    + S    P D   +     
Sbjct: 564  TPLNWRNVEDLANDTADAV-IQDRWVE--FTRRYYVVKTRPDLSPMSKPADSPREAAYPN 620

Query: 947  FVNYF-SEKYGI-VLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQM 1003
             + Y  S + G+  L+   QPL+ + ++    N L   F     S K S           
Sbjct: 621  LLEYCKSRRKGLDCLVDQEQPLIEVSKTPGLSNHLSPTFRPLTTSAKASAK--------- 671

Query: 1004 HVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLIL 1063
              ++ PEL  ++ +P S +++  LLPS+ +R++ +++     +E+N    N HI   L+L
Sbjct: 672  --YLIPELCAKLTIPASTLRTALLLPSISRRIDDILIV----KELNAKFFNHHITEELLL 725

Query: 1064 EALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHK 1123
             A++T      +  ERLE+LGD+ LKY  S ++F+T P K+EG L   R   + N  L K
Sbjct: 726  AAISTPSAGFDYDYERLEVLGDAFLKYLSSIYVFVTNPAKNEGALHVSRQQIISNKALLK 785

Query: 1124 LGTDRKLQGYIRDSAFDPRRWVAPG--QLSLRP--VPCECGVDTLEVPLDGKFFTQDTKV 1179
                  L  +I+   F  + W  P    +S+R    P +      + P       ++T+ 
Sbjct: 786  TACTVGLPPFIQSRPFSYKVWQPPNFSLVSIREDFTPNDDTKKISKAPSQSPLARKETEA 845

Query: 1180 VV--------------GKPCDMGH----------------RWMGSKTIADCAEALIGAYY 1209
            ++              GK     H                +W+G K IAD  EA+IGA Y
Sbjct: 846  IMEAPPKKIESEDSVKGKALPGSHASSKKENRGQQDTQYTQWLGDKAIADVVEAIIGAAY 905

Query: 1210 VGGGLIAALYMMKWLGI---DADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFT 1266
            + GG   AL   K L I   + +         +T     +   R   I+ +E+ IG++F 
Sbjct: 906  ISGGRDLALTTAKTLDIPIRNIEHWADFGRKALTPPPRVTAKLRDGSIEAVETIIGHKFA 965

Query: 1267 VKFLLQEAITHASVQEFY--CYQNL 1289
               LL +A+THASVQ +   CY+ L
Sbjct: 966  YPHLLAQALTHASVQGYQSTCYERL 990


>gi|449514052|ref|XP_002194560.2| PREDICTED: probable ATP-dependent RNA helicase DDX58 [Taeniopygia
           guttata]
          Length = 927

 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 140/524 (26%), Positives = 245/524 (46%), Gaps = 48/524 (9%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ+++ + A   +NT+    TG+GKT +AV++ +   Q I S G K  ++FLA  + +
Sbjct: 246 RSYQIELAQPAIDGKNTLICAPTGSGKTFVAVLICEHHFQNIPS-GRKAKVVFLATKMPV 304

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGV--DEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
             QQ +V R H  FE   Y+  +G+  +   +   +  I  +D++V+TPQIL++ + K  
Sbjct: 305 YEQQKNVFRQH--FERSGYF-VQGICGETVANISVENVIQDSDIIVLTPQILVNIMDKGI 361

Query: 164 LS-LDIVCFIVIDECHHATGNHPYTKIM-----KEFYHKSDNKPKVFGMTASPVVRKGVS 217
           LS L I   ++ DECH+  GNHPY  +M     ++F   +   P++ G+TAS  V    S
Sbjct: 362 LSSLSIFTLMIFDECHNTAGNHPYNVLMTRYLDQKFDSSAKQLPQIVGLTASVGVGNAKS 421

Query: 218 SAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYD---QSKFCG--SDL 270
           +    E  I  L S LD Q  +   E+K +++ F    +   R+     Q++F    S L
Sbjct: 422 TKETVE-HICTLCSYLDIQAISTVRENKQDLQRFANKPEIHIRWVKMRAQNRFADIISGL 480

Query: 271 KGKLEVSWSKFDA--SLSKLQ----GSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDEL 324
             + EV   K  +  ++S++     G+Q   +  +  + K    QL D   +   C D  
Sbjct: 481 MSETEVLMRKIYSVDTISQINKIYFGTQRYEHWIVSTQKKCRLLQLEDKEKESSICRD-- 538

Query: 325 GLICAYEAVKICLEKVLKAQEECEIYRQSSLQ--CKYFLEEVLHVIGSALPLADKIFLDF 382
                   + IC E + K  +   I   + ++    Y  E   +V        +K   + 
Sbjct: 539 --------LFICTEHLRKFNDALIISEDARIEDALAYLNEFFTNVKNGPYTELEKQLTEK 590

Query: 383 GFDYSKAV-----DLGYISTKLHELLQLF-LSFGKSTQVLCIIFVERIIAAKVVERFVKK 436
             +  + +     D    + KL EL  +   ++  + Q   I+F +       ++++V+ 
Sbjct: 591 FQEIEQELTALSKDESNENPKLEELACILDEAYHYNPQTRTILFAKTRALVAALKKWVEA 650

Query: 437 VPFLTHLT--VAYLTGSTTSVDALTPKVQKEVLESFRGGK-VNLLFATDVIEEGMHVPNC 493
            P L+H+   V    G       +T  +QK VL++FR  K + LL AT V +EG+ +  C
Sbjct: 651 NPLLSHIKPDVMMGKGRRDQNVGMTLPMQKGVLDAFRNDKDIRLLIATSVADEGIDITEC 710

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           + V+ ++    V+  IQ RGR R  +S+ IL+  +  + +  KL
Sbjct: 711 NLVVLYEYFGNVTKMIQVRGRGRAKDSKCILVTSKTEVVENEKL 754


>gi|307195788|gb|EFN77602.1| Endoribonuclease Dcr-1 [Harpegnathos saltator]
          Length = 1807

 Score =  128 bits (322), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 166/710 (23%), Positives = 292/710 (41%), Gaps = 123/710 (17%)

Query: 401  ELLQLFLSFGKSTQVLCIIFVERIIAAKVV--ERFVKKVPFLTHLTVAYLTGST-----T 453
            E++Q FL   ++    C    +R   A ++  E+   K P+  H  +  +  S      T
Sbjct: 276  EMMQDFLYILETLGPWC---ADRAALALLILTEKLKIKTPYERHYLLLNMVASVFIKIRT 332

Query: 454  SVDA-------LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
            + D        +  + Q+EVL+ FR  + NLL AT ++EEG+ +P C++V+R+D PK   
Sbjct: 333  TDDVGYSRDLEMEHRKQEEVLKRFRIHECNLLIATSILEEGIDIPKCNFVMRYDFPKNYQ 392

Query: 507  SYIQSRGRARQHNSQFILMLERGNLKQR-NKLFDIIRSERSV----TDTALSRDPEACFL 561
            SY+Q + RAR  ++  +L++ +   K+   +L      E+++    ++  L+   E    
Sbjct: 393  SYVQCKSRARAIDALHVLLVPQKISKELIWQLAQYQYIEKTLLLKCSNKELTEKEETGAD 452

Query: 562  KACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE----EA 617
                 +     +       VT +S+++L++RYC  LPSD +    P +  ++        
Sbjct: 453  MYAAMIPHYKPLDGDDAPKVTFNSAISLVNRYCAKLPSDTFTRLTPEWSIETVNINEVTM 512

Query: 618  YECELTLPSNAPFQTIVGPTSR-NKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE---- 672
            Y C L LP N+P + +V      N+ +++++  L+ C  LH+   ++D+LLP  +E    
Sbjct: 513  YTCSLRLPINSPMKYVVTSYPMPNRAMARRMAALQLCIDLHRGNEIDDNLLPIGKENFKA 572

Query: 673  -PSENNLISKKNESLPG-----AGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN-- 724
             P +  + +  +ES         GTTKR++ +      AL+       GV  + Y  N  
Sbjct: 573  KPEDAEVPALPDESRADFSEARPGTTKRRQYYYKKTAEALTD-CRPIVGVPSYLYHINMV 631

Query: 725  FACSIVTE-------IYS------GFVLLIESELDNDVGNFELELYLVSKTVKATVSSSG 771
             +C +  E       IY       GF +L   E+          +Y  S  V   +  S 
Sbjct: 632  LSCPLPEEQNTRGRRIYPPEESAIGFGILTLKEIPKLCP---FPIYTRSGEVHVQLKLSK 688

Query: 772  Q-VHLDADQMSKAKCFQELFFNGL-----FGKLFVKSKSSGSREFFLKRETNSLWSPSYM 825
            Q V LD  Q+ +   F    F  +     +  LF  + S  S                  
Sbjct: 689  QTVILDDVQIERVATFLNYTFTNVLRLQKYLMLFDPNASENS------------------ 730

Query: 826  YLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPC 885
            Y+++P++IV T       ++W                 FL   +C     N+ P +  P 
Sbjct: 731  YIIVPVKIVTTNEGSDISVDW----------------DFL---ECIYQNRNAVPTKV-PE 770

Query: 886  KTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTD 941
            +            N   D     D V++  +      + + + EI  N + +S F G   
Sbjct: 771  EVR---------KNFKFDPSKYYDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPG--- 818

Query: 942  DDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSG 995
            DD  TF  Y+ +KY I + +  Q LL +  +    N L     N  G     S + +K  
Sbjct: 819  DDYSTFEEYYLKKYDIQIQNLEQSLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRA 878

Query: 996  MNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
                  Q  + +  EL      P S+ +    LP ++ R+ +L+LA+Q+R
Sbjct: 879  KRENLEQKQI-LVAELCAIHPFPASLWRQAVCLPCILYRINALLLANQIR 927



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 130/316 (41%), Gaps = 86/316 (27%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            SLIL+ALT     +  ++ERLE +GDS LKYA++ +L+ TY   HEG+LS  RS  V N 
Sbjct: 1273 SLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNL 1332

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL---SLRPVPCECGV----------DTLE 1165
             L++LG  + L   +  + F+P   W+ P       L     E GV           TL+
Sbjct: 1333 NLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELEQALIESGVPFALWNQADIPTLQ 1392

Query: 1166 V--PLDGKFFTQDT--KVVVGK----------PCDMGH------------RWMGSKTIAD 1199
               P +     ++T  K+V+ K           C++ +              +  K+IAD
Sbjct: 1393 AVNPTEINQLVKETEEKLVIMKSELDKNESKLSCNLDNMRCFIPYNLITQHSIPDKSIAD 1452

Query: 1200 CAEALIGAYYVGGGLIAALYMMKWLGIDA--DLEVSLVDDCITRASLRSYVPRINEI--- 1254
            C EALIGAY +  G   AL  M WLGI      EV +V +      +   +P + E    
Sbjct: 1453 CVEALIGAYLIACGPRGALLFMAWLGIHVLPTEEVQIVSEDEPEERIPGSIPYVKETSEH 1512

Query: 1255 --------------------------------------KDIESKIGYEFTVKFLLQEAIT 1276
                                                  +++E  IGY+F     L +A T
Sbjct: 1513 GEIVWTQIRYGKLEEPQNPLLRYIPDPEGELCMMLDGYEELEKSIGYKFRDSSYLLQAFT 1572

Query: 1277 HASVQEFY---CYQNL 1289
            HAS Q      CYQ L
Sbjct: 1573 HASYQPNRLTDCYQRL 1588



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 9/116 (7%)

Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDS 1383
             PKALGD+ ES+ GA+ +D+ ++LD VW ++  I+   +      +P  P+REL+EL   
Sbjct: 1687 VPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFSTNVPKSPIRELLELEPE 1746

Query: 1384 LGYFVKENCTLKGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
               F K      G  V   +     DV   G  +G  R+ + AK  AA   LKKL+
Sbjct: 1747 TAKFGKPEKLADGRRVRVTV-----DVFGKGSFKGIGRNYRIAKCTAAKCALKKLK 1797



 Score = 47.8 bits (112), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 126/299 (42%), Gaps = 22/299 (7%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA---QAIKSNGFKKLIIFL 99
           +F PR YQ+++   AK +N I  L     +T I + LI++ A   + + S G K+ I  L
Sbjct: 13  SFTPREYQVELLYAAKEKNIIICLGKNFEQTFIVIKLIQEFATNNRRLISKGGKRAIYIL 72

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
                 V +    I+  TD +V        V +   + + +    + VLV TP++    +
Sbjct: 73  NNEDKCVIKA-TYIKQLTDLKV-------LVCDSVPEDFAESFESSHVLVGTPKVYTQLI 124

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSA 219
            +  L    +  +++DECH +  +     I++ F    +N P++ G+ A P+    ++ A
Sbjct: 125 SEKKLLPCHINLVIVDECHKSNEDSNLKFILQTFL-LCNNVPRIIGL-AVPLF--NLTEA 180

Query: 220 MDCEG-QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
               G +I ++E+T    V T  D   +  + P  +E    Y  SK    DL   LE   
Sbjct: 181 PGRLGLEIEKVEATFQCGVETTNDILSIIRYSPKPREYVVEY--SKGEKGDLYNTLENLV 238

Query: 279 SKFDASLSKLQGSQLNCYKD--MDDKHKT--LRKQLSDYHAKILYCLDELGLICAYEAV 333
                 L   +      Y D   +D  K    R++  +     LY L+ LG  CA  A 
Sbjct: 239 LDATEFLRDHRYDPTEIYNDEFFEDIQKIPDPREKPLEMMQDFLYILETLGPWCADRAA 297


>gi|283131646|dbj|BAI63215.1| Dicer [Hemicentrotus pulcherrimus]
          Length = 1816

 Score =  128 bits (321), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 148/300 (49%), Gaps = 22/300 (7%)

Query: 18  PNPPDMGSSGHDHAVDGPSSSTNS------INFIPRIYQLKVFEVAKRRNTIAVLETGAG 71
           P+   MG    D    G SS T+       ++F PR YQL++ E A  +NT   L++G  
Sbjct: 4   PSSSPMGLEVIDVETPGGSSVTSQKEYTPILSFTPRHYQLELLETALEQNTTVCLQSGTE 63

Query: 72  KTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAK 128
           KT +AVMLIK+++ +++    +G K+  IFL  +   + +  +VI  HTD  V+EY   +
Sbjct: 64  KTFLAVMLIKELSGSVRLRLEDGGKR-TIFLVNSESYLSEYGNVIHTHTDLNVKEYRNRE 122

Query: 129 GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYT 187
            +  WD   WQ EI    V VM  +I L  L+ +++ L +   +++DECHH   + HPY 
Sbjct: 123 KMISWDKTRWQDEIEHCHVAVMDSEIFLKLLQMSYVGLSMFNLLILDECHHTLQHLHPYH 182

Query: 188 KIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEM 246
           +IM  F     D++P++ G+T S  + KG       E  I  LE++L S      + T +
Sbjct: 183 QIMLAFNQCPRDDRPRILGLTES--ILKGDFKPCALEKHIDMLETSLQSTAKIATNLTSI 240

Query: 247 EVFVPSAKES---CRFYDQ-----SKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKD 298
             +    KE+   CR Y+      SK       G  +++  ++       +G  ++C +D
Sbjct: 241 SKYGTKPKEAVIVCRKYEDCVELVSKLSKLLTDGLDQLNQFEYSFKARDFEGELVDCKRD 300



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 168/337 (49%), Gaps = 45/337 (13%)

Query: 410 GKSTQVLC-IIFVERIIAAKVVERFVKKVP-------FLTHLTVAYLTG--STTSVDALT 459
           G+ST  LC IIFVE+   A V+ R  KK+        FL    +A  +G   TT   A+ 
Sbjct: 470 GRSTTNLCGIIFVEQRYTAVVMSRLFKKLSKRDPNLHFLLCSCIAIGSGRLGTTKKSAIQ 529

Query: 460 PKVQK----EVLESFRGGKVNLLFATDVIEEGMHVPNCS---YVIRFDLPKTVSSYIQSR 512
            + Q+    EVL  FR  +VN+L AT  +E+G+ +P C+    V+RFD P +  SY+QS+
Sbjct: 530 VQNQRRKHEEVLRKFRRREVNVLVATSSVEDGVELPRCNGCNLVVRFDRPASYQSYMQSK 589

Query: 513 GRARQHNSQFILMLERGNLK------QRNKLFDIIRSERSVTDTALSRDPEACFLKACTY 566
            +AR   S +++++   +++      Q  + F+ + + +S   T   ++     LKA   
Sbjct: 590 AKARAPTSHYLMLIYEPDVQLFLSDVQCYQEFERVLNRKSKGKTQ-PQEEVLDLLKADK- 647

Query: 567 VKTKSYIVE----STGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYK----SAEEAY 618
            +  +YI +    S  AS+TT  ++ +I+RYC  LPSD +       K +         +
Sbjct: 648 -QMPAYIPKNEEGSPRASMTT--AIQIINRYCAKLPSDVFTHLTASCKMQERKGDVSPEF 704

Query: 619 ECELTLPSNAPFQT-IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEP 673
           +  L LP N+P +  I GP  + K  +   V ++A   LH+ G LND+L P    S+ + 
Sbjct: 705 QATLQLPINSPLRKPITGPWMKRKKWATMAVAVKAATILHKAGELNDYLQPMGKESILKA 764

Query: 674 SEN--NLISKKNESLPGAGTTKRKELHGTTPIRALSG 708
           ++N  N +    ++ P  GTTK++  +     + L G
Sbjct: 765 TDNAFNHLFADGQTRP--GTTKKRRYYDKEVAKCLQG 799



 Score = 97.4 bits (241), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 136/345 (39%), Gaps = 116/345 (33%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            ++IL++LT     + F++ERLE+LGDS LK AV+ +L+ TYP   EG+LS  RS  V N 
Sbjct: 1257 TIILQSLTMSNSSDGFNLERLEMLGDSFLKQAVTAYLYCTYPHLDEGKLSFLRSKQVSNF 1316

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL---SLRPVPCE----------------- 1158
             L+ LG  + L   ++ S FDP   W+ P  L   S +P+P E                 
Sbjct: 1317 NLYCLGEKKALAHKMQVSLFDPSINWLPPCMLVKESSKPIPKEETETDPDAGFVIDTWDP 1376

Query: 1159 ------------------CG-----------VDTLEVPLDGKFFTQDTK------VVVGK 1183
                              C            +D  +      FF ++ K        VG 
Sbjct: 1377 STVEGVDDFDDDDFDSDQCWEENSDDFSDEEIDETKAECPDDFFAREEKDKEQWSFSVGD 1436

Query: 1184 PCDM-GHRWMGSKT-----------------------IADCAEALIGAYYVGGGLIAALY 1219
            P D+ G  + G+KT                       IADC EALIG Y V  G  +AL 
Sbjct: 1437 PDDVPGLTYTGAKTQDLGSVPQLPYEIHTQHSMSDKSIADCVEALIGCYLVSCGFRSALL 1496

Query: 1220 MMKWLGID---------------------ADLEVSLVDDCITRAS---LRSYVPRINEI- 1254
            +M W+G+D                     ADL VS +   + +     LRS VP   ++ 
Sbjct: 1497 IMAWMGLDVLPAINDQSKKRNDQSSDLPAADLPVSCLYGYLKQPESPLLRS-VPNAEDVL 1555

Query: 1255 -------KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
                      E  I Y F  +  L +A TH+S        CYQ L
Sbjct: 1556 QQQLVGYDGFEKTINYRFKDRAYLLQAFTHSSYHRNSITDCYQRL 1600



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 15/134 (11%)

Query: 1315 GETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP-- 1372
            GE  +S   ++ PKALGD+ ES+ GA+ +D+ ++L+ VW+++ P++   +     +LP  
Sbjct: 1692 GEQEESE-DIEVPKALGDIFESVAGAIYLDSGMSLNAVWKVYYPMMKQQIEQYASDLPIS 1750

Query: 1373 PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKA 1428
            P+REL+E+      F     T+ G+            V +VG+GQ     R+   AK  A
Sbjct: 1751 PVRELLEMEPETARFGPPEKTIDGKTRVT--------VNVVGKGQFKGIGRNYHIAKATA 1802

Query: 1429 ASQLLKKLEVCEKR 1442
            A   L+ L+   K+
Sbjct: 1803 ARFALRHLKSQPKK 1816



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 9/148 (6%)

Query: 907  LKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHP 962
            L D VV  I+      + Y + +I+ +    SPF     +  +TFV+Y+ E+Y I + + 
Sbjct: 972  LADAVVTPIYRNIDQPQRYFMADILYDLPVTSPFPS---EKYETFVDYYFERYDIQISNF 1028

Query: 963  GQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTK-KPQMHVHMPPELLVRVDVPIS 1020
             QPL+ +    +  NLL   + +  G      +G N K   Q   ++ PEL     +P S
Sbjct: 1029 QQPLVDVDCMSSRLNLLTPRYLNHKGKALPISTGQNKKGNLQKKQYLVPELCYIYPIPAS 1088

Query: 1021 VVKSLYLLPSVMQRLESLMLASQLREEI 1048
            + +    LPS++ RL +L++A +LR ++
Sbjct: 1089 LWRKAVCLPSILYRLNALLIAEELRVQV 1116


>gi|170099920|ref|XP_001881178.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643857|gb|EDR08108.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1469

 Score =  127 bits (319), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 110/199 (55%), Gaps = 18/199 (9%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ ++ E + R+N I  L+TG+GKT+IAV+ +K       +    K+  F APTV L 
Sbjct: 14  RGYQQEMLEESLRKNIIIALDTGSGKTLIAVLRLKHEIHREPT----KVCWFFAPTVALC 69

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            QQ  VI+ +    V    G+   D+W ++  W+K I  + V+V TPQ+ LDALR  +L 
Sbjct: 70  EQQKSVIQTYLPVSVGLISGSLEPDQWRNAALWEKVIRTHRVMVSTPQVFLDALRHGYLV 129

Query: 166 LDI-VCFIVIDECHHATGNHPYTKIMKEFY-----HKSD-NKPKVFGMTASPVVRKGVSS 218
           L   +C +V DE HHA  NHPY +IM+EFY       SD  +P V G+TASP+    V  
Sbjct: 130 LGRDICLLVFDEAHHAVDNHPYNRIMQEFYFDLPIQGSDFVRPAVLGLTASPIYGGNVVK 189

Query: 219 AMDCEGQISELESTLDSQV 237
           A         +E+ LDS +
Sbjct: 190 AFQT------IEANLDSTI 202



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 140/300 (46%), Gaps = 16/300 (5%)

Query: 1026 YLLPSVMQRLESLMLASQLREEINCHSRNFH-IPSSLILEALTTLGCCESFSMERLELLG 1084
            +LLP++++ +  L     L++ +   +     IP  L++ A+T     E  + +RLE LG
Sbjct: 934  FLLPALLRSIGMLTTTHSLQKAVFTPASPISSIPMQLLMVAITAPSSNERKNYQRLETLG 993

Query: 1085 DSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRW 1144
            D+VLK+     L   YP  HEG L+ ++  AV N  L K    R+L  +I       ++W
Sbjct: 994  DTVLKFVCGIQLLSEYPLWHEGYLTRKKDHAVSNVRLAKENVARELYRWIIRDMLLGKKW 1053

Query: 1145 VAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEAL 1204
              P  LS +        D    P   K   ++      K        + +K +AD  E++
Sbjct: 1054 -KPHYLSKK--------DAETTPEPDKMTVEEVNTKKKKKKGKSQS-LSTKVLADVVESI 1103

Query: 1205 IGAYYVGGGLIAALYMMKW--LGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIG 1262
            IGA Y+ GG       +K+  LG+      + ++  ++RA      P  +++ D+ES +G
Sbjct: 1104 IGAAYLHGGFDLGYECIKFFDLGLKWQPLPTRIEQLLSRARDSEETPYPHQLVDVESMLG 1163

Query: 1263 YEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQI-TEYVKSFPKPGETTDSG 1321
            Y F  K LL EA+THAS Q+     + Y+ ++     +L  I T+Y+  +  PG+    G
Sbjct: 1164 YTFNHKLLLIEALTHASYQQDQYTSSSYERMEFLGDSILDMIVTDYL--YRAPGKEYSPG 1221



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 132/298 (44%), Gaps = 43/298 (14%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTS---------VDALTPKVQKEVL 467
           IIFV+R  A   +   +   P       V  L G++ S            L  + Q++ +
Sbjct: 400 IIFVQRRDAVLALAELLSNHPQTKDQFRVGLLIGTSESSYRHAVMDITRNLIRESQEDTI 459

Query: 468 ESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE 527
             F+ G+ NL+ +T V EEG+ +  C  VIR+D P  ++S+ QSRGRAR+  S F +M E
Sbjct: 460 ADFKIGEKNLIVSTSVAEEGIDIQACGSVIRWDPPPNMASWAQSRGRARRQRSTFTVMFE 519

Query: 528 RGNLKQRN--KLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS------YIVESTGA 579
            G+  Q++  K  ++ R   ++ +   +RD E    +  +    +       +   STGA
Sbjct: 520 DGSKNQKDVAKWENLERQMVALYNDP-TRDLEFILDEQDSDEMEEEEDDDWVFRHPSTGA 578

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE-------------------EAYEC 620
            +T  S+V+ +  +C ++P+  +   +P++     +                     Y  
Sbjct: 579 LLTLHSAVSHLSHFCAVIPNSAHVDNRPLYDIDPPDFIEGWHALEPHARAIIPYTGPYGS 638

Query: 621 ELTLPSNAPFQT---IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP--SVEEP 673
           ++TLP   P  T    V      K  + +     A   L++ G LND+LLP  S+ EP
Sbjct: 639 KVTLPRALPLPTREFFVERMYDTKISAHRHAAFRAYFSLYEAGLLNDNLLPITSIIEP 696


>gi|298711900|emb|CBJ48587.1| dicer-like 3 [Ectocarpus siliculosus]
          Length = 1557

 Score =  127 bits (318), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 101/176 (57%), Gaps = 11/176 (6%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDI----AQAIKSNGFKKLIIFLAP 101
           PR YQ + F+ A++ N + V  TG GKT++++MLI+D     A+  +S    K  IFL P
Sbjct: 3   PRPYQAEAFDAARKANVVMVGATGVGKTLVSLMLIRDFYFEDARRRESKN-HKWCIFLCP 61

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           T  LV QQ    ++ T      Y G K +D W  + W++E++  +VLVMTP  LL+ L +
Sbjct: 62  TQELVFQQAKSAQIFTGVRCGPYVG-KDLDYWGVKKWKEEMDNKEVLVMTPNALLNLLHR 120

Query: 162 A--FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK---PKVFGMTASPVV 212
              +LSL  V  +V DECH A   HPY ++M  +     N+   PKVFGMTASP +
Sbjct: 121 GNEYLSLKDVGVLVFDECHKARKKHPYARVMAFYLELRKNRGPLPKVFGMTASPTI 176



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 21/317 (6%)

Query: 393 GYISTKLHELLQLFLSFG-KSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS 451
           G + T +  LL++   +G ++    C++FVER   A+V+  F+            ++ G 
Sbjct: 367 GRVITLVKTLLRVSEQWGDEAKNFRCMVFVERRATARVLSAFLSHS-LSGRFCCGFVVGR 425

Query: 452 TTSV-DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510
             +  D        + +  FR G+V +L  TD   EG+ VP C+ V+  D  KT  S I 
Sbjct: 426 ANARGDDFGRSRMAQTINMFRAGEVQILVTTDACSEGIDVPECNLVVSMDKIKTSRSLIH 485

Query: 511 SRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTK 570
           +RGRAR    +F++M+E G+  +R+++  ++     +    L  +  +  +         
Sbjct: 486 TRGRARSKGGKFVIMVEDGDDMERDRVSLMLMESEDIKRFQLGHEKASVRVPLRHSHPNM 545

Query: 571 SYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPF 630
            + +ES+GA V  D +  L+++    +  D  + P  I           C L LPS    
Sbjct: 546 VHHIESSGAVVDMDMATPLMNQALSAVGCD--FHPLLI-----------CRLELPSFMGM 592

Query: 631 QTI-----VGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNES 685
            TI           +K+ ++  V   A  ++ + G ++  L P+  + +     S   E 
Sbjct: 593 PTIDTAMLADEHFWSKSQARSAVSFLAVVQMLEKGYIDKRLNPTRGKAAWLRPRSGGGEG 652

Query: 686 LPGAGTTKRKELHGTTP 702
            P  G  + K      P
Sbjct: 653 SPHQGQDEAKSPEADAP 669



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 87/229 (37%), Gaps = 74/229 (32%)

Query: 1078 ERLELLGDSVLKYAVSCHLFLTYPK-KHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
            ERLE LGD+ L Y     +F   P    EG ++  R   V N+ L K    R L+ ++  
Sbjct: 1165 ERLETLGDAWLNYYAGFVVFQDKPVLMEEGMMTLLRKNVVSNARLLKCADGRGLREFM-- 1222

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWM---- 1192
              + PR                                     ++G+P DM   W     
Sbjct: 1223 --YPPRS------------------------------------ILGRPFDM---WSPSLL 1241

Query: 1193 --------GSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDD------- 1237
                      KTIAD  EAL+GA  V GG  +A Y+M+WLG+ A    +           
Sbjct: 1242 PLPPPVKASKKTIADVVEALLGAALVAGGNRSAAYIMEWLGLAAASAAATAAAAGEDPAA 1301

Query: 1238 -------CITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
                     T+ S R     +  I+ +E ++GY F   +L  +AITH S
Sbjct: 1302 PPLPEVYVATKPSAR----LMGNIRLLEKRLGYTFRYPWLCMQAITHPS 1346


>gi|195331135|ref|XP_002032258.1| GM23619 [Drosophila sechellia]
 gi|194121201|gb|EDW43244.1| GM23619 [Drosophila sechellia]
          Length = 2249

 Score =  126 bits (316), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 133/522 (25%), Positives = 204/522 (39%), Gaps = 149/522 (28%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1724 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1783

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL---SLRPVPCECGVDTLEVPL------- 1168
             L++LG  ++L  Y+  + F+P   W+ P       L     E  + T    L       
Sbjct: 1784 NLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIK 1843

Query: 1169 ---------------DGKFFTQDTKVVVGK-----------PCDMGHRWMGSKTIAD--- 1199
                           D     Q+  V  G+            C + +  +   +I D   
Sbjct: 1844 NLSSVQICEMVREKADALGLEQNGGVQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSI 1903

Query: 1200 --CAEALIGAYYVGGGLIAALYMMKWLGI---------DADLEVSLV--------DDCIT 1240
              C EALIGAY +  G   AL  M WLG+         DA  +   +        ++ +T
Sbjct: 1904 ADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDAGNQEQRIPGSTKPNAENVVT 1963

Query: 1241 --------RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITHASVQEFY 1284
                    R+ L  + P   E         ++ E  +GY+F  +  L +A+THAS     
Sbjct: 1964 VYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNR 2023

Query: 1285 ---CYQNL--------------------------------------------------YK 1291
               CYQ L                                                  +K
Sbjct: 2024 LTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHK 2083

Query: 1292 HLQHCSTLLLSQITEYVKSFPKPGETT------------DSGPSMKAPKALGDLLESIVG 1339
              +H S  L   I  +V+   + G +             D    ++ PKALGD+ ESI G
Sbjct: 2084 FFRHLSPGLNDVIDRFVRIQQENGHSISEEYYLLSEEECDDAEDVEVPKALGDVFESIAG 2143

Query: 1340 AVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCTLKGE 1397
            A+ +D+ ++LD VW ++  ++SP +      +P  P+REL+EL      F K      G 
Sbjct: 2144 AIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGR 2203

Query: 1398 MVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
             V   +     DV   G   G  R+ + AK  AA   L++L+
Sbjct: 2204 RVRVTV-----DVFCKGTFRGIGRNYRIAKCTAAKCALRQLK 2240



 Score = 70.5 bits (171), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 97/190 (51%), Gaps = 25/190 (13%)

Query: 530 NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-TYVKTKSYIVESTGASVTTDSSVN 588
            + Q  ++  ++ S+ + T+       EA    AC    + K +++  TGASV   S++ 
Sbjct: 770 QMAQYREIEQMLLSKCANTEPPEQEQSEAERFSACLAAYRPKPHLL--TGASVDLGSAIA 827

Query: 589 LIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ-TIVGPTSRNKNL 643
           L+++YC  LPSD +     +++   +E A    ++  L LP N+P +  IVG     + L
Sbjct: 828 LVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLPMPTQTL 887

Query: 644 SKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSENNLISKKNESLPG 688
           +++L  L+AC +LH++G L+D L P       ++E        EP +  ++   +E  P 
Sbjct: 888 ARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLSDE--PR 945

Query: 689 AGTTKRKELH 698
            GTTKR++ +
Sbjct: 946 PGTTKRRQYY 955



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 44/66 (66%)

Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
           + Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   +
Sbjct: 549 RRQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPA 608

Query: 521 QFILML 526
             ++++
Sbjct: 609 YHVILV 614



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 14/157 (8%)

Query: 903  DAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 958
            DA+  +D VV+  +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ 
Sbjct: 1127 DAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLT 1183

Query: 959  LIHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELL 1012
            + +  QPLL +  +    N L     N  G     S + +K        Q  + + PEL 
Sbjct: 1184 IQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELC 1242

Query: 1013 VRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEIN 1049
                 P S+ ++   LP ++ R+  L+LA  +R++++
Sbjct: 1243 TVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVS 1279


>gi|383862048|ref|XP_003706496.1| PREDICTED: endoribonuclease Dcr-1-like [Megachile rotundata]
          Length = 1952

 Score =  126 bits (316), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 166/694 (23%), Positives = 294/694 (42%), Gaps = 122/694 (17%)

Query: 415  VLC-IIFVERIIAAKVVERFVKKVP-------FLTHL-TVAYLTGSTTSVDALT--PKVQ 463
            +LC +IFV++   AKV+   + ++        FL+ L T+   T   +    L    K Q
Sbjct: 432  LLCGVIFVDKGFVAKVLFYLLNEISAHDEDLEFLSPLYTIERNTDDVSYSKDLEIEHKKQ 491

Query: 464  KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
            +EVL+ FR  + NLL +T ++EEG+ +P C++V+R+D PKT  SY+Q + RAR  ++  +
Sbjct: 492  EEVLKKFRIHECNLLISTSILEEGIDIPKCNFVMRYDFPKTYQSYVQCKSRARAIDALHV 551

Query: 524  LMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSY----------- 572
            L++ +              S+  +   A     E   L  C+  +               
Sbjct: 552  LLVPKET------------SKECIWQLAQYHYIEKTLLIKCSNNEPSEEEENEADMYAAM 599

Query: 573  ------IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE----AYECEL 622
                  + E     VT +S+++L++RYC  LPSD +    P +  +         Y C L
Sbjct: 600  IPHYKPLSEDDAPKVTFNSAISLVNRYCAKLPSDTFTRLTPEWSIEQINSDNMPMYVCSL 659

Query: 623  TLPSNAPFQTIVGPTSR-NKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE-----PSEN 676
             LP N+P +  V      N+ +++++  L+ C  LH+   ++D+LLP  +E     P + 
Sbjct: 660  RLPINSPVKYAVSSYPMPNRAMARRMAALQLCIDLHRKNEIDDNLLPIGKENFKAKPEDA 719

Query: 677  NLISKKNE-----SLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHA----YKFN--F 725
             + +  +E     S    GTTKR++ +      AL+      C  I+ A    Y  N   
Sbjct: 720  EVPALPDEIKVDFSEARPGTTKRRQYYYKKTANALTD-----CRPIVGAPSYLYHINMVL 774

Query: 726  ACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAK 784
            +C++  E  +    +   E ++ +G   + L  + K     + + SG+VH+   Q+  +K
Sbjct: 775  SCALPEEQNTRGRRIYPPE-ESAIGFGIITLKEIPKLCPFPIYTRSGEVHV---QLKLSK 830

Query: 785  CFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRI 844
            C        +  ++ ++  S+    F     TN L    Y+ L  P        + S+ I
Sbjct: 831  C------TVVLNEIQIEKIST----FLNYTFTNVLRLQQYLMLFDP-----NASENSYMI 875

Query: 845  NWSGINPCASVV---EFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGS 901
                ++  + V    EF+         +C  N   + P +          KD        
Sbjct: 876  VPVKLDTESDVTVDWEFL---------ECIYNNRTTVPTKVPEEDR----KDF------K 916

Query: 902  VDAKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGI 957
             DA   +D V++  +      + + + EI  N + +S F G   DD  TF  Y+ +KY I
Sbjct: 917  FDASKYQDAVIMPWYRNQDQPQYFYVAEICTNLNPKSSFPG---DDYSTFEEYYFKKYEI 973

Query: 958  VLIHPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHMPPEL 1011
             + +  QPLL +  +    N L     N  G     S + +K        Q  + +  EL
Sbjct: 974  QIQNLDQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVAEL 1032

Query: 1012 LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
                  P S+ +    LP ++ R+ +L+LA+Q+R
Sbjct: 1033 CAIHPFPASLWRQAVCLPCILYRINALLLANQIR 1066



 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 137/534 (25%), Positives = 209/534 (39%), Gaps = 165/534 (30%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            SLIL+ALT     +  ++ERLE +GDS LKYA++ +L+ TY   HEG+LS  RS  V N 
Sbjct: 1418 SLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNL 1477

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP---------GQLSLRPVPC----ECGVDTLE 1165
             L++LG  + L   +  + F+P   W+ P           L    +P     +  + TL+
Sbjct: 1478 NLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELEQALIKSGIPSTLWNQADIPTLQ 1537

Query: 1166 V--PLDGKFFTQDTKVVVGKPCD------------------------MGHRWMGSKTIAD 1199
               P +     ++T+  +G   D                        +    +  K+IAD
Sbjct: 1538 AVNPNEITQLVRETEQKLGIMKDELVRNEAILSNNLDNLRCFIPYNLITQHSIPDKSIAD 1597

Query: 1200 CAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRAS---------------- 1243
            C EALIGAY +  G   AL  M WLGI     + + + CI + +                
Sbjct: 1598 CVEALIGAYLIACGPRGALLFMAWLGIHV---LPMEEICIVQETEPEERIPGSTPYVKGT 1654

Query: 1244 ----------------------LRSYVPR--------INEIKDIESKIGYEFT-VKFLLQ 1272
                                  L  Y+P         ++  +++E  IGY+F  + +LLQ
Sbjct: 1655 NDQGEVTWIQIRYGKLEEPQNPLLRYIPNPEQELLMMLDGYEELEKNIGYKFNDISYLLQ 1714

Query: 1273 EAITHASVQEFY---CYQNL---------------------------------------- 1289
             A THAS Q      CYQ L                                        
Sbjct: 1715 -AFTHASYQPNKLTDCYQRLEFLGDAVLDYLITRHLYEDARQHSPGALTDLRSALVNNTI 1773

Query: 1290 ----------YKHLQHCSTLLLSQITEYVKSFPKPG------------ETTDSGPSMKAP 1327
                      +K+ +H S  L   I  +V+   + G            E  +    ++ P
Sbjct: 1774 FASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISEEYYLIGEEKCEEAEDVEVP 1833

Query: 1328 KALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLG 1385
            KALGD+ ES+ GA+ +D+ ++LD VW ++  I+   +      +P  P+REL+EL     
Sbjct: 1834 KALGDVFESLAGAIYLDSGMSLDAVWSVYYVIMKNEIEQFSTNVPKSPIRELLELEPETA 1893

Query: 1386 YFVKENCTLKGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
             F K      G  V   +     DV   G  +G  R+ + AK  AA   LKKL+
Sbjct: 1894 KFGKPEKLADGHRVRVTV-----DVFGKGSFKGIGRNYRIAKCTAAKCALKKLK 1942



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 107/245 (43%), Gaps = 27/245 (11%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA----QAIKSNGFKKLIIFL 99
           F PR YQ+++F  A+ +N I  L     +T I + LI++ A    + +   G + L I  
Sbjct: 14  FTPREYQVELFYAARDKNIIVCLGKSYEQTFIVIKLIQEFAANNRRPLSEGGKRSLYILT 73

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKG---VDEWDSQCWQKEINKNDVLVMTPQILL 156
                ++   Y  I+  TD +V  Y        VD++++         + VLV+T ++  
Sbjct: 74  DEEKCIIKASY--IQQLTDLKVLMYTACSSNEFVDKFET---------SHVLVLTSEVCT 122

Query: 157 DALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGV 216
             L +  +    +  +++DECH    ++    I++ F   +D  P++ G+          
Sbjct: 123 KLLAEKKILPHQINLVIVDECHKFINDNKLKFILQTFLSCTD-VPRIIGLAVPLFNLTQE 181

Query: 217 SSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276
              +  E  I ++E+T   +V T  D   +  + P AKE        ++C  + KG+L +
Sbjct: 182 PGRLGLE--IEKVETTFQCEVETASDILSILRYSPKAKEYI-----VEYCNGE-KGELHI 233

Query: 277 SWSKF 281
           +   +
Sbjct: 234 TIKNY 238


>gi|340727238|ref|XP_003401955.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dcr-1-like [Bombus
            terrestris]
          Length = 1957

 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 165/698 (23%), Positives = 284/698 (40%), Gaps = 130/698 (18%)

Query: 415  VLC-IIFVERIIAAKVVERFVKKVPF----LTHLTVAY-----LTGSTTSVD-ALTPKVQ 463
            +LC +IFV +   AKV+   + ++      L  L+  Y     +   + S D  +  + Q
Sbjct: 437  LLCGVIFVNKAFVAKVLFYLLNEISMHDEDLRFLSPLYTIERNIEDISYSKDLEIEHRKQ 496

Query: 464  KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
            +EVL+ FR  + NLL +T ++EEG+ +P C++V+R+D PKT  SY+Q + RAR  ++ ++
Sbjct: 497  EEVLKRFRIHECNLLISTSILEEGIDIPKCNFVMRYDFPKTYQSYVQCKTRARATDALYV 556

Query: 524  LMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVEST------ 577
            L++ +              S+  +   A     E   L  C+  +               
Sbjct: 557  LLVPQE------------MSKEYIWQLAQYHYIEKTLLVKCSNNEPSEEEENEADMYAAM 604

Query: 578  -----------GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA----EEAYECEL 622
                          VT +S+++L++RYC  LPSD +    P +  +      +  Y C L
Sbjct: 605  IPHYKPLDGDDAPKVTFNSAISLVNRYCAKLPSDTFTRLTPEWSIQEMVVDNKFMYTCSL 664

Query: 623  TLPSNAPFQTIV-GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE--------- 672
             LP N+P + +V      N+ +++++  L+ C  LH+   ++D+LLP  +E         
Sbjct: 665  RLPINSPVKYVVLSYPMPNRAMARRMAALQLCIDLHRKNEIDDNLLPIGKENFKAKPEDA 724

Query: 673  -----PSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN--F 725
                 P E    SK + S    GTTKR++ +      AL+       GV  + Y  N   
Sbjct: 725  EVPALPDE----SKVDFSEARPGTTKRRQYYYKKTAEALTD-CRPIIGVPSYLYHINLVL 779

Query: 726  ACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAK 784
            +C +  E  +    +   E ++ +G   + L  + K     + + SG+VH+      +  
Sbjct: 780  SCPLPEEQNTRGRRIYPPE-ESAIGFGIITLKEIPKLCPFPIYTRSGEVHVKLKLSKQTI 838

Query: 785  CFQEL-------FFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTF 837
               E+       F N  F                    TN L    Y+ L  P       
Sbjct: 839  VLNEMQVEKIAIFLNYTF--------------------TNVLRLQQYLMLFDP-----NA 873

Query: 838  GDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHL 897
             + S+ I    ++  + V   I + +FL     N N G        P K     +     
Sbjct: 874  SENSYMIVPVKLDEQSDV---IVDWNFLECIYKNRNAG--------PTKVPEEIR----- 917

Query: 898  ANGSVDAKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSE 953
             N   DA    D V++  +      + + + EI  N + +S F G   DD  TF  Y+ +
Sbjct: 918  KNFKFDASKYHDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPG---DDYSTFEEYYLK 974

Query: 954  KYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHM 1007
            KY I + +  QPLL +  +    N L     N  G     S + +K        Q  + +
Sbjct: 975  KYDIQIQNLDQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-L 1033

Query: 1008 PPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
              EL      P S+ +    LP ++ R+ +L+LA+Q+R
Sbjct: 1034 VAELCAIHPFPASLWRQAVCLPCILYRINALLLANQIR 1071



 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 130/317 (41%), Gaps = 88/317 (27%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            SLIL+ALT     +  ++ERLE +GD  LKYA++ +L+ TY   HEG+LS  RS  V N 
Sbjct: 1425 SLILQALTMSNANDGINLERLETIGDXFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNL 1484

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL---SLRPVPCECGV-----DTLEVP-LD 1169
             L++LG  + L   +  + F+P   W+ P       L     E GV     +  ++P L 
Sbjct: 1485 NLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELEQALIESGVPSTLWNQADIPALQ 1544

Query: 1170 GKFFTQDTKVVVGKPCDMG------------------------------HRWMGSKTIAD 1199
                ++ T++V      +G                                 +  K+IAD
Sbjct: 1545 AVNPSEITQLVRETEQKLGVMKTELDRNETSLSNNLDNMRCFIPYNLITQHSIPDKSIAD 1604

Query: 1200 CAEALIGAYYVGGGLIAALYMMKWLGIDA--DLEVSLVDDCITRASLRSYVPRI------ 1251
            C EALIGAY +  G   AL  M WLGI      E++++ +   R  +    P I      
Sbjct: 1605 CVEALIGAYLIACGSRGALLFMAWLGIHVLPTEEITIIQESEPRERVPGSTPYIKGTNEK 1664

Query: 1252 ----------------------------NEIK-------DIESKIGYEF-TVKFLLQEAI 1275
                                         E+K       ++E  IGYEF  + +LLQ A 
Sbjct: 1665 GQTTWTQIRYGKLEEPQNPLLRYIPDPEQELKMMLDGYEELEKSIGYEFHDISYLLQ-AF 1723

Query: 1276 THASVQEFY---CYQNL 1289
            THAS Q      CYQ L
Sbjct: 1724 THASYQPNRLTDCYQRL 1740



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 9/116 (7%)

Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDS 1383
             PKALGD+ ES+ GA+ +D+ ++LD VW ++  I+   +      +P  P+REL+EL   
Sbjct: 1839 VPKALGDVFESLAGAIYLDSGMSLDAVWSVYYAIMKNEIEQFSTNVPKSPIRELLELEPE 1898

Query: 1384 LGYFVKENCTLKGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
               F K      G  V   +     DV   G  +G  R+ + AK  AA   LKK E
Sbjct: 1899 TAKFGKPEKLADGRRVRVTV-----DVFGKGSFKGIGRNYRIAKCTAAKCALKKAE 1949



 Score = 45.4 bits (106), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 142/382 (37%), Gaps = 45/382 (11%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA----QAIKSNGFKKLIIFL 99
           F PR YQ+++F  AK R+ I  L     +T I + LI++ A    + +   G + L I  
Sbjct: 14  FTPREYQVELFYAAKDRDIIVCLGKNYEQTFIVIKLIQEFATNNRRLLSEGGRRSLFILT 73

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
                 +   Y  I+  TD +V         D      + +    + VLV T +     L
Sbjct: 74  DEEKCTIKASY--IQQLTDLKV------LLCDTCSVTEFIENFETSHVLVTTGKTCAQLL 125

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSA 219
               +    +  ++IDECH +  N+    I++      +N P++ G+             
Sbjct: 126 TDRKILPCQINLVIIDECHKSIDNNELKFILQTIL-ACENVPRIIGLAVPLFNLTQEPGR 184

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
           +  E  I ++E+T   +V T  D   +  + P  KE    Y +++      KGKL  +  
Sbjct: 185 LGLE--IEKVENTFQCEVETASDILSILRYSPKPKEYVVEYAKNE------KGKLHTTIE 236

Query: 280 KF---------DASLSKLQGSQLNCYKDMD---DKHKTLRKQLSDYHAKILYCLDELGLI 327
            +         D      +      Y+D+    D  +   + + D+    LY L+ LG  
Sbjct: 237 NYILHALEFLRDHRHDPTEIYNEEFYEDIQKIPDPTEKPFEMMQDF----LYILETLGPW 292

Query: 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
           CA  A    L    K + +    R   L     L  V  V      L D  F        
Sbjct: 293 CADRAALALLILTEKLKVKTPYERHYLL-----LNMVASVFTKIRALCDNTFEVLS---E 344

Query: 388 KAVDLGYISTKLHELLQLFLSF 409
           K     Y + K+H LLQ+  ++
Sbjct: 345 KERIYKYTTPKVHRLLQILKTY 366


>gi|343428057|emb|CBQ71581.1| related to cell cycle control protein dicer [Sporisorium reilianum
           SRZ2]
          Length = 1683

 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 126/243 (51%), Gaps = 35/243 (14%)

Query: 31  AVDGPSSS--TNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK 88
           AVD PS    ++ + F+PR YQL++ E+AK  N +  L+TG+GKT+I+V+L++ + +   
Sbjct: 54  AVD-PSDQLRSDQLAFVPRSYQLELAELAKAGNVLVCLDTGSGKTLISVLLLQHVHEVQN 112

Query: 89  SNGFK--------------KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYG-------A 127
           +                  K+  FL   V LVHQQ  VI  H++  V + YG        
Sbjct: 113 AQRPPSPPQSPAPPAPQRPKVSFFLVNLVPLVHQQSSVIAGHSNLSVGKLYGELKDTVRG 172

Query: 128 KG----VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN 183
           KG    VD W    W   +  + V+V T Q  LDAL   F+ +D +  ++ DE HHA  N
Sbjct: 173 KGNKLTVDGWREPQWSALLESHQVIVSTAQCFLDALIHGFIKMDDLNLLIFDEVHHALKN 232

Query: 184 HPYTKIMKEFYHKSDNK--PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE 241
           HP+ +IMK +Y  +  K  PK+FGMTASP+     +S    +     L+  +++++ T+ 
Sbjct: 233 HPFFRIMK-YYRLAPEKERPKIFGMTASPI----FTSTGQFDDASRYLQKVMNARIHTVS 287

Query: 242 DKT 244
             T
Sbjct: 288 KDT 290



 Score =  114 bits (285), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 149/342 (43%), Gaps = 56/342 (16%)

Query: 391 DLGYISTKLHELLQLFLSFGKSTQVLC-IIFVERIIAAKVVERFVKKVPFLTHLTVAYLT 449
           D    S K+  L++    F  S    C IIFVER   A ++   +K+V  L  +   +L 
Sbjct: 490 DASNTSHKVLRLIETLKCFEPSAADFCAIIFVERRQTATLLVELIKRVAGLEFIHPEFLL 549

Query: 450 G-STTSVDALTPKV----QKEVLESFRGGK-VNLLFATDVIEEGMHVPNCSYVIRFDLPK 503
           G    S +   P +    Q +VL  FR  K  NLL AT + EEG+ +   + V+RFDL  
Sbjct: 550 GHENGSANGGAPGMDWHDQVQVLNRFRRRKPTNLLVATSIAEEGLDIQAANLVVRFDLFN 609

Query: 504 TVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVT--------------- 548
              S++QSRGRAR   S+FILM ER N      + +   +E S                 
Sbjct: 610 RHISFLQSRGRARAKQSRFILMAERDNASHAQAILNAFNTEASRAKWLEGIAEAEHDAGF 669

Query: 549 -------DTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
                     + RD EA   + C +         STGA +  + + +L+  Y   L S+ 
Sbjct: 670 YAQEWQHQLRVERD-EAGAGEECIFEP-------STGARLFPEDAPSLVSHYAATLHSE- 720

Query: 602 YYTPKPIFKYK--------SAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEAC 653
            Y    +  YK             + C L LPS +  +++     R+K  +K++V  +AC
Sbjct: 721 -YLKDAVLAYKLDSIPHGFGVPSTFSCTLELPSTSAVRSVESGEYRSKKQAKRMVAFKAC 779

Query: 654 EKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRK 695
           ++L  +G L+D+L+P + +         K   L GAG   RK
Sbjct: 780 QQLRDMGELDDYLMPKLLD---------KAAVLEGAGVGTRK 812



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 1034 RLESLMLASQLREEINCHSRNF--HIPSSLILEALTTLGCCESFSMERLELLGDSVLKYA 1091
            R + L+LA        C++  F   + + L+LEALT+     SF  ERLE LGD+ LK  
Sbjct: 1123 RYDQLLLAHA------CNATLFASRLDTDLVLEALTSPAAGSSFDYERLEFLGDTFLKLV 1176

Query: 1092 VSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGY 1133
             +CH F T+  + E +L       + N  L K     +L+ +
Sbjct: 1177 ATCHTFTTHLGRTEAELHLANKAILTNVRLLKEARRVRLERW 1218


>gi|380025724|ref|XP_003696618.1| PREDICTED: endoribonuclease Dcr-1-like [Apis florea]
          Length = 1966

 Score =  125 bits (315), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 168/691 (24%), Positives = 289/691 (41%), Gaps = 116/691 (16%)

Query: 415  VLC-IIFVERIIAAKVVERFVKKVPF----LTHLTVAY-----LTGSTTSVD-ALTPKVQ 463
            +LC +IFV++   AKV+   + ++      L  L+  Y     +   + S D  +  + Q
Sbjct: 436  LLCGVIFVDKAFVAKVLFYLLNEISIHDEELHFLSPLYTIEKNIDDISYSKDLEIEHRKQ 495

Query: 464  KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
            +EVL+ FR  + N+L +T ++EEG+ +P C++V+R+D PKT  SY+Q + RAR  ++ ++
Sbjct: 496  EEVLKRFRIHECNILISTSILEEGIDIPKCNFVMRYDFPKTYQSYVQCKSRARAPDALYV 555

Query: 524  LMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACT--------------YVKT 569
            L++ +              S+  V   A     E   L  C+              Y   
Sbjct: 556  LLVSQE------------MSKEYVWQLAQYHYIEKTLLVKCSNNEPSEEEENEADMYAAM 603

Query: 570  KSYIVESTGAS---VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE----EAYECEL 622
              +     G     VT +S+++L++RYC  LPSD +    P +  +         Y C L
Sbjct: 604  IPHYKPLDGGDAPKVTFNSAISLVNRYCAKLPSDTFTRLTPEWSIQEMNIDNILMYICSL 663

Query: 623  TLPSNAPFQTIVGPTSR-NKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE--------- 672
             LP N+P + IV      NK +++++  L+ C  LH+   ++D+LLP  +E         
Sbjct: 664  RLPINSPVKYIVSSYPMPNKAMARRMAALQLCIDLHRKNEIDDNLLPIGKENFKAKPEDA 723

Query: 673  -----PSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN--F 725
                 P E    SK + S    GTTKR++ +      AL+       GV  + Y  N   
Sbjct: 724  EVPALPDE----SKVDFSEARPGTTKRRQYYYKKTAEALTD-CRPIIGVPSYLYHINLVL 778

Query: 726  ACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAK 784
            +C +  E  +    +   E ++ +G   + L  + K     + + SG+VH+   ++SK  
Sbjct: 779  SCPLPEEQNTRGRRIYPPE-ESAIGFGIITLKEIPKLCPFPIYTRSGEVHVKL-KLSK-- 834

Query: 785  CFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRI 844
              Q +  N +        +      F     TN L    Y+ L  P        + S+ I
Sbjct: 835  --QTIILNEM--------QVEKIATFLNYTFTNVLRLQQYLMLFDP-----NASENSYMI 879

Query: 845  NWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDA 904
                ++  + +     + +FL     N N G        P K     +      N   DA
Sbjct: 880  VPVKLDEQSDIA---VDWNFLECIYKNRNTG--------PTKIPEETR-----KNFKFDA 923

Query: 905  KNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLI 960
                D V++  +      + + + EI  N + +S F GN   D  TF  Y+ +KY I + 
Sbjct: 924  SKYHDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPGN---DYGTFEEYYLKKYDIQIQ 980

Query: 961  HPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVR 1014
            +  QPLL +  +    N L     N  G     S + +K        Q  + +  EL   
Sbjct: 981  NLDQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVAELCAI 1039

Query: 1015 VDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
               P S+ +    LP ++ R+ +L+LA+Q+R
Sbjct: 1040 HPFPASLWRQAVCLPCILYRINALLLANQIR 1070



 Score = 93.6 bits (231), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 133/317 (41%), Gaps = 88/317 (27%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            SLIL+ALT     +  ++ERLE +GDS LKYA++ +L+ TY   HEG+LS  RS  V N 
Sbjct: 1419 SLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNL 1478

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL---SLRPVPCECGVDT----------LE 1165
             L++LG  + L   +  + F+P   W+ P       L     E GV +          L+
Sbjct: 1479 NLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELEQALIESGVPSTLWNQADIPALQ 1538

Query: 1166 V--PLDGKFFTQDTKVVVGK------------PCDMGH------------RWMGSKTIAD 1199
               P +     ++T+  +G             P ++ +              +  K+IAD
Sbjct: 1539 AVNPFEITQLVRETEQKLGVMKNELDRNETTLPNNLDNMRCFIPYNLITQHSIPDKSIAD 1598

Query: 1200 CAEALIGAYYVGGGLIAALYMMKWLGIDA--DLEVSLVDDCITRASLRSYVPRI------ 1251
            C EALIGAY +  G   AL  M WLGI      E+S++ +   +  +    P +      
Sbjct: 1599 CVEALIGAYLIACGPRGALLFMAWLGIHVLPTEEISIIQETEPKDRIPGSTPYVKGKNEK 1658

Query: 1252 ----------------------------NEIK-------DIESKIGYEF-TVKFLLQEAI 1275
                                         E+K       ++E  IGY+F  + +LLQ A 
Sbjct: 1659 GQTIWTQIRYGKLEEPQNPLLRYIVDPEEELKLMLDGYEELEKNIGYKFHDISYLLQ-AF 1717

Query: 1276 THASVQEFY---CYQNL 1289
            THAS Q      CYQ L
Sbjct: 1718 THASYQPNRLTDCYQRL 1734



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 9/116 (7%)

Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDS 1383
             PKALGD+ ES+ GA+ +D+ ++LD VW ++  I+   +      +P  P+REL+EL   
Sbjct: 1833 VPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKNEIEQFSTNVPKSPIRELLELEPE 1892

Query: 1384 LGYFVKENCTLKGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
               F K      G  V   +     DV   G  +G  R+ + AK  AA   LKK++
Sbjct: 1893 TAKFGKPEKLADGRRVRVTV-----DVFGKGSFKGIGRNYRIAKCTAAKCALKKIK 1943


>gi|422398915|ref|NP_001116485.2| endoribonuclease Dicer-1 [Apis mellifera]
          Length = 1952

 Score =  125 bits (314), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 167/698 (23%), Positives = 285/698 (40%), Gaps = 130/698 (18%)

Query: 415  VLC-IIFVERIIAAKVVERFVKKVPF----LTHLTVAY-----LTGSTTSVD-ALTPKVQ 463
            +LC +IFV++   AKV+   + ++      L  L+  Y     +   + S D  +  + Q
Sbjct: 436  LLCGVIFVDKAFVAKVLFYLLNEISMHDEELHFLSPLYTIEKNIDDISYSKDLEIEHRKQ 495

Query: 464  KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
            +EVL+ FR  + N+L +T ++EEG+ +P C++V+R+D PKT  SY+Q + RAR  ++ ++
Sbjct: 496  EEVLKRFRIHECNILISTSILEEGIDIPKCNFVMRYDFPKTYQSYVQCKSRARAPDALYV 555

Query: 524  LMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACT--------------YVKT 569
            L++ +              S+  V   A     E   L  C+              Y   
Sbjct: 556  LLVSQE------------MSKEYVWQLAQYHYIEKTLLVKCSNNEPSEEEENEADMYAAM 603

Query: 570  KSYIVESTGAS---VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE----EAYECEL 622
              +     G     VT +S+++L++RYC  LPSD +    P +  +         Y C L
Sbjct: 604  IPHYKPLDGGDAPKVTFNSAISLVNRYCAKLPSDTFTRLTPEWSIQEMNIDNILMYICSL 663

Query: 623  TLPSNAPFQTIVGPTSR-NKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE--------- 672
             LP N+P + IV      NK +++++  L+ C  LH+   ++D+LLP  +E         
Sbjct: 664  RLPINSPVKYIVSSYPMPNKAMARRMAALQLCIDLHRKNEIDDNLLPIGKENFKAKPEDA 723

Query: 673  -----PSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN--F 725
                 P E    SK + S    GTTKR++ +      AL+       GV  + Y  N   
Sbjct: 724  EVPALPDE----SKVDFSEARPGTTKRRQYYYKKTAEALTD-CRPIIGVPSYLYHINLVL 778

Query: 726  ACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAK 784
            +C +  E  +    +   E ++ +G   + L  + K     + + SG+VH+      +  
Sbjct: 779  SCPLPEEQNTRGRRIYPPE-ESAIGFGIITLKEIPKLCPFPIYTRSGEVHVKLKLTKQTI 837

Query: 785  CFQEL-------FFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTF 837
               E+       F N  F                    TN L    Y+ L  P       
Sbjct: 838  ILNEMQVEKIATFLNYTF--------------------TNVLRLQQYLMLFDP-----NA 872

Query: 838  GDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHL 897
             + S+ I    ++  + +     + +FL     N N G        P K     +     
Sbjct: 873  SENSYMIVPVKLDEQSDIA---VDWNFLECIYKNRNIG--------PTKIPEEAR----- 916

Query: 898  ANGSVDAKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSE 953
             N   DA    D V++  +      + + + EI  N + +S F GN   D  TF  Y+ +
Sbjct: 917  KNFKFDASKYHDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPGN---DYGTFEEYYLK 973

Query: 954  KYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHM 1007
            KY I + +  QPLL +  +    N L     N  G     S + +K        Q  + +
Sbjct: 974  KYDIQIQNLDQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-L 1032

Query: 1008 PPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
              EL      P S+ +    LP ++ R+ +L+LA+Q+R
Sbjct: 1033 VAELCAIHPFPASLWRQAVCLPCILYRINALLLANQIR 1070



 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 133/317 (41%), Gaps = 88/317 (27%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            SLIL+ALT     +  ++ERLE +GDS LKYA++ +L+ TY   HEG+LS  RS  V N 
Sbjct: 1418 SLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNL 1477

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL---SLRPVPCECGVDT----------LE 1165
             L++LG  + L   +  + F+P   W+ P       L     E GV +          L+
Sbjct: 1478 NLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELEQALIESGVPSTLWNQADIPALQ 1537

Query: 1166 V--PLDGKFFTQDTKVVVGK------------PCDMGH------------RWMGSKTIAD 1199
               P +     ++T+  +G             P ++ +              +  K+IAD
Sbjct: 1538 AVNPFEITQLVRETEQKLGVMKNELDRNETTLPNNLDNMRCFIPYNLITQHSIPDKSIAD 1597

Query: 1200 CAEALIGAYYVGGGLIAALYMMKWLGIDA--DLEVSLVDDCITRASLRSYVPRI------ 1251
            C EALIGAY +  G   AL  M WLGI      E++++ +   +  +    P +      
Sbjct: 1598 CVEALIGAYLIACGPRGALLFMAWLGIHVLPTEEINIIQETEPKDRIPGSTPFVKGKNEK 1657

Query: 1252 ----------------------------NEIK-------DIESKIGYEF-TVKFLLQEAI 1275
                                         E+K       ++E  IGY+F  + +LLQ A 
Sbjct: 1658 GETIWTQIRYGKLEEPQNPLLRYIVDPEEELKLMLDGYEELEKNIGYKFHDISYLLQ-AF 1716

Query: 1276 THASVQEFY---CYQNL 1289
            THAS Q      CYQ L
Sbjct: 1717 THASYQPNRLTDCYQRL 1733



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 9/116 (7%)

Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDS 1383
             PKALGD+ ES+ GA+ +D+ ++LD VW ++  I+   +      +P  P+REL+EL   
Sbjct: 1832 VPKALGDVFESLAGAIYLDSGMSLDAVWSVYYAIMKNEIEQFSTNVPKSPIRELLELEPE 1891

Query: 1384 LGYFVKENCTLKGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
               F K      G  V   +     DV   G  +G  R+ + AK  AA   LKKL+
Sbjct: 1892 TAKFGKPEKLADGRRVRVTV-----DVFGKGSFKGIGRNYRIAKCTAAKCALKKLK 1942



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 80/383 (20%), Positives = 150/383 (39%), Gaps = 47/383 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA----QAIKSNGFKKLIIFL 99
           F PR YQ+++F  AK ++ I  L     +T + + LI++ A    + +   G + L I  
Sbjct: 14  FTPREYQVELFYAAKDKDIIVCLGKNYEQTFLVIKLIQEFATNNRRLLSQGGKRSLYILT 73

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
                 +   Y  I+  TD +V         D   +  + ++   + VL+ T +     L
Sbjct: 74  DEDKCTIKASY--IQQLTDLKV------LLCDTCSTAEFIEKFEISHVLLATSKTCAQLL 125

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSA 219
               +    +  +++DECH +  N     I++      +N P++ G+             
Sbjct: 126 ADKKILPHQINLVIVDECHKSINNSQLKFILQTIL-SCNNVPRIIGLAVPLFNLTQEPGR 184

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
           +  E  I ++E+T   +V T  D   +  + P  KE    Y +S+      KG+L ++  
Sbjct: 185 LGLE--IEKVENTFQCEVETASDILSILRYSPKPKEYVVEYAKSE------KGELHITIE 236

Query: 280 KF---------DASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330
                      D      +      Y+D+        K   +    +L+ L+ LG  CA 
Sbjct: 237 NHILHAIEFLRDHRYDPTEIYNEEFYEDIQKIPDPTEKPF-EMMQDLLHILETLGPWCAD 295

Query: 331 EA--VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY-- 386
            A    + L + LK +   E         +++L  +L++I S      +   D  F+   
Sbjct: 296 RAAFALLILTEKLKIKTPYE---------RHYL--LLNMIASVFTKI-RALCDNAFEVLS 343

Query: 387 SKAVDLGYISTKLHELLQLFLSF 409
            K     Y +TK+H LLQ+  ++
Sbjct: 344 EKEKIYKYTTTKVHRLLQILKTY 366


>gi|170181362|gb|ACB11577.1| dicer-1 CG4792-PA-like protein [Apis mellifera]
          Length = 1946

 Score =  125 bits (314), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 167/698 (23%), Positives = 285/698 (40%), Gaps = 130/698 (18%)

Query: 415  VLC-IIFVERIIAAKVVERFVKKVPF----LTHLTVAY-----LTGSTTSVD-ALTPKVQ 463
            +LC +IFV++   AKV+   + ++      L  L+  Y     +   + S D  +  + Q
Sbjct: 436  LLCGVIFVDKAFVAKVLFYLLNEISMHDEELHFLSPLYTIEKNIDDISYSKDLEIEHRKQ 495

Query: 464  KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
            +EVL+ FR  + N+L +T ++EEG+ +P C++V+R+D PKT  SY+Q + RAR  ++ ++
Sbjct: 496  EEVLKRFRIHECNILISTSILEEGIDIPKCNFVMRYDFPKTYQSYVQCKSRARAPDALYV 555

Query: 524  LMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACT--------------YVKT 569
            L++ +              S+  V   A     E   L  C+              Y   
Sbjct: 556  LLVSQE------------MSKEYVWQLAQYHYIEKTLLVKCSNNEPSEEEENEADMYAAM 603

Query: 570  KSYIVESTGAS---VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE----EAYECEL 622
              +     G     VT +S+++L++RYC  LPSD +    P +  +         Y C L
Sbjct: 604  IPHYKPLDGGDAPKVTFNSAISLVNRYCAKLPSDTFTRLTPEWSIQEMNIDNILMYICSL 663

Query: 623  TLPSNAPFQTIVGPTSR-NKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE--------- 672
             LP N+P + IV      NK +++++  L+ C  LH+   ++D+LLP  +E         
Sbjct: 664  RLPINSPVKYIVSSYPMPNKAMARRMAALQLCIDLHRKNEIDDNLLPIGKENFKAKPEDA 723

Query: 673  -----PSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN--F 725
                 P E    SK + S    GTTKR++ +      AL+       GV  + Y  N   
Sbjct: 724  EVPALPDE----SKVDFSEARPGTTKRRQYYYKKTAEALTD-CRPIIGVPSYLYHINLVL 778

Query: 726  ACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAK 784
            +C +  E  +    +   E ++ +G   + L  + K     + + SG+VH+      +  
Sbjct: 779  SCPLPEEQNTRGRRIYPPE-ESAIGFGIITLKEIPKLCPFPIYTRSGEVHVKLKLTKQTI 837

Query: 785  CFQEL-------FFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTF 837
               E+       F N  F                    TN L    Y+ L  P       
Sbjct: 838  ILNEMQVEKIATFLNYTF--------------------TNVLRLQQYLMLFDP-----NA 872

Query: 838  GDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHL 897
             + S+ I    ++  + +     + +FL     N N G        P K     +     
Sbjct: 873  SENSYMIVPVKLDEQSDIA---VDWNFLECIYKNRNIG--------PTKIPEEAR----- 916

Query: 898  ANGSVDAKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSE 953
             N   DA    D V++  +      + + + EI  N + +S F GN   D  TF  Y+ +
Sbjct: 917  KNFKFDASKYHDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPGN---DYGTFEEYYLK 973

Query: 954  KYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHM 1007
            KY I + +  QPLL +  +    N L     N  G     S + +K        Q  + +
Sbjct: 974  KYDIQIQNLDQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-L 1032

Query: 1008 PPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
              EL      P S+ +    LP ++ R+ +L+LA+Q+R
Sbjct: 1033 VAELCAIHPFPASLWRQAVCLPCILYRINALLLANQIR 1070



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 133/317 (41%), Gaps = 88/317 (27%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            SLIL+ALT     +  ++ERLE +GDS LKYA++ +L+ TY   HEG+LS  RS  V N 
Sbjct: 1418 SLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNL 1477

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL---SLRPVPCECGVDT----------LE 1165
             L++LG  + L   +  + F+P   W+ P       L     E GV +          L+
Sbjct: 1478 NLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELEQALIESGVPSTLWNQADIPALQ 1537

Query: 1166 V--PLDGKFFTQDTKVVVGK------------PCDMGH------------RWMGSKTIAD 1199
               P +     ++T+  +G             P ++ +              +  K+IAD
Sbjct: 1538 AVNPFEITQLVRETEQKLGVMKNELDRNETTLPNNLDNMRCFIPYNLITQHSIPDKSIAD 1597

Query: 1200 CAEALIGAYYVGGGLIAALYMMKWLGIDA--DLEVSLVDDCITRASLRSYVPRI------ 1251
            C EALIGAY +  G   AL  M WLGI      E++++ +   +  +    P +      
Sbjct: 1598 CVEALIGAYLIACGPRGALLFMAWLGIHVLPTEEINIIQETEPKDRIPGSTPFVKGKNEK 1657

Query: 1252 ----------------------------NEIK-------DIESKIGYEF-TVKFLLQEAI 1275
                                         E+K       ++E  IGY+F  + +LLQ A 
Sbjct: 1658 GETIWTQIRYGKLEEPQNPLLRYIVDPEEELKLMLDGYEELEKNIGYKFHDISYLLQ-AF 1716

Query: 1276 THASVQEFY---CYQNL 1289
            THAS Q      CYQ L
Sbjct: 1717 THASYQPNRLTDCYQRL 1733



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 9/116 (7%)

Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDS 1383
             PKALGD+ ES+ GA+ + + ++LD VW ++  I+   +      +P  P+REL+EL   
Sbjct: 1832 VPKALGDVFESLAGAIYLGSGMSLDAVWSVYYAIMKNEIEQFSTNVPKSPIRELLELEPE 1891

Query: 1384 LGYFVKENCTLKGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
               F K      G  V   +     DV   G  +G  R+ + AK  AA   LKKL+
Sbjct: 1892 TAKFGKPEKLADGRRVRVTV-----DVFGKGSFKGIGRNYRIAKCTAAKCALKKLK 1942



 Score = 42.4 bits (98), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 80/383 (20%), Positives = 150/383 (39%), Gaps = 47/383 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA----QAIKSNGFKKLIIFL 99
           F PR YQ+++F  AK ++ I  L     +T + + LI++ A    + +   G + L I  
Sbjct: 14  FTPREYQVELFYAAKDKDIIVCLGKNYEQTFLVIKLIQEFATNSRRLLSQGGKRSLYILT 73

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
                 +   Y  I+  TD +V         D   +  + ++   + VL+ T +     L
Sbjct: 74  DEDKCTIKASY--IQQLTDLKV------LLCDTCSTAEFIEKFEISHVLLATSKTCAQLL 125

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSA 219
               +    +  +++DECH +  N     I++      +N P++ G+             
Sbjct: 126 ADKKILPHQINLVIVDECHKSINNSQLKFILQTIL-SCNNVPRIIGLAVPLFNLTQEPGR 184

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
           +  E  I ++E+T   +V T  D   +  + P  KE    Y +S+      KG+L ++  
Sbjct: 185 LGLE--IEKVENTFQCEVETASDILSILRYSPKPKEYVVEYAKSE------KGELHITIE 236

Query: 280 KF---------DASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330
                      D      +      Y+D+        K   +    +L+ L+ LG  CA 
Sbjct: 237 NHILHAIEFLRDHRYDPTEIYNEEFYEDIQKIPDPTEKPF-EMMQDLLHILETLGPWCAD 295

Query: 331 EA--VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY-- 386
            A    + L + LK +   E         +++L  +L++I S      +   D  F+   
Sbjct: 296 RAAFALLILTEKLKIKTPYE---------RHYL--LLNMIASVFTKI-RALRDNAFEVLS 343

Query: 387 SKAVDLGYISTKLHELLQLFLSF 409
            K     Y +TK+H LLQ+  ++
Sbjct: 344 EKEKIYKYTTTKVHRLLQILKTY 366


>gi|15150411|gb|AAK84929.1| SD01621p [Drosophila melanogaster]
          Length = 865

 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 132/522 (25%), Positives = 201/522 (38%), Gaps = 149/522 (28%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 340  SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 399

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL---SLRPVPCECGVDTLEVPL------- 1168
             L++LG  ++L  Y+  + F+P   W+ P       L     E  + T    L       
Sbjct: 400  NLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIK 459

Query: 1169 ---------------DGKFFTQDTKVVVGK-----------PCDMGHRWMGSKTIAD--- 1199
                           D     Q+     G+            C + +  +   +I D   
Sbjct: 460  NLSSVQICEMVREKADALGLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSI 519

Query: 1200 --CAEALIGAYYVGGGLIAALYMMKWLGI------------------------DADLEVS 1233
              C EALIGAY +  G   AL  M WLG+                        +A+  V+
Sbjct: 520  ADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVT 579

Query: 1234 LVDDCIT-RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITHASVQEFY 1284
            +     T R+ L  + P   E         ++ E  +GY+F  +  L +A+THAS     
Sbjct: 580  VYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNR 639

Query: 1285 ---CYQNL--------------------------------------------------YK 1291
               CYQ L                                                  +K
Sbjct: 640  LTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHK 699

Query: 1292 HLQHCSTLLLSQITEYVKSFPKPGE------------TTDSGPSMKAPKALGDLLESIVG 1339
              +H S  L   I  +V+   + G               D    ++ PKALGD+ ESI G
Sbjct: 700  FFRHLSPGLNDVIDRFVRIQQENGHCISEEYYLLSEEECDDAEDVEVPKALGDVFESIAG 759

Query: 1340 AVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCTLKGE 1397
            A+ +D+ ++LD VW ++  ++SP +      +P  P+REL+EL      F K      G 
Sbjct: 760  AIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGR 819

Query: 1398 MVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
             V   +     DV   G   G  R+ + AK  AA   L++L+
Sbjct: 820  RVRVTV-----DVFCKGTFRGIGRNYRIAKCTAAKCALRQLK 856


>gi|411170363|gb|AFW16070.1| dicer-1 [Nilaparvata lugens]
          Length = 2239

 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 203/512 (39%), Gaps = 137/512 (26%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S++L+ALT     +  ++ERLE +GDS LK+A++ +L+  Y   HEG+LS  RS  V N 
Sbjct: 1718 SVLLQALTMSNANDGINLERLETIGDSFLKFAITTYLYCVYESVHEGKLSHLRSKQVSNL 1777

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL---SLRPVPCECGV-----DTLEVPLDG 1170
             L++LG  +     +  + F+P   W+ P       L     E GV     +  E+P   
Sbjct: 1778 NLYRLGKHKIFGESMIATKFEPHDNWLPPCYFVPKELERALIEAGVPAFQWNQAELPSLR 1837

Query: 1171 KFFTQDTKVVVGK-----------------------PCDM-GHRWMGSKTIADCAEALIG 1206
               T++   +V +                       PC++     +  K+IADC EALIG
Sbjct: 1838 DMSTEEINAIVKERGEQLQGTMTDSPLSVENLPCFVPCNLITQHSIPDKSIADCVEALIG 1897

Query: 1207 AYYVGGGLIAALYMMKWLGIDAD--LEVSLVDDCITRASLRSYVPRINEIKD-------- 1256
            AY +  G   AL  M WLGI      EV + DD      + S++P  N ++         
Sbjct: 1898 AYLIECGPRGALIFMSWLGIKVMPCEEVKVTDDTALERPVGSHLPDQNNVQIRYGFVKPP 1957

Query: 1257 ------------------------IESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
                                    +E  + Y F  +  L +A+THAS        CYQ L
Sbjct: 1958 RSPLLRHVSNPECELERLLAGFDVLERSLRYRFNDRSYLLQAMTHASYHTNRLTDCYQRL 2017

Query: 1290 ------------YKHL-----QHC-------------STLLLS----------------Q 1303
                         +HL     QHC             +T+  S                 
Sbjct: 2018 EFLGDAALDYLITRHLYEDKRQHCPGDLTDLRSALVNNTIFASLAVRHGFHKYFCHLSPG 2077

Query: 1304 ITEYVKSFPKPGETTDSGPSMK----------------APKALGDLLESIVGAVLIDTKL 1347
            ++E ++ F +  E      S +                 PKALGD+ ES+ GA+ +D+ +
Sbjct: 2078 LSEVIERFVRIQEENGHAISEECYLIGEEECEEAEDVEVPKALGDVFESVAGAIFLDSGM 2137

Query: 1348 NLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRL 1405
            +LD VW ++  ++   +      +P  P+REL+EL      F K      G  V   + +
Sbjct: 2138 SLDAVWMVYYHMMKNEIDQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVNVEV 2197

Query: 1406 QLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
              K      +G  R+ + AK  AA   LK+L+
Sbjct: 2198 FGKGTY---KGIGRNYRIAKCTAAKCALKQLK 2226



 Score =  117 bits (294), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 171/359 (47%), Gaps = 49/359 (13%)

Query: 416  LC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPK-------VQ 463
            LC ++ VE    AK++  F   +    P L H+  A  T S  +     P+        Q
Sbjct: 706  LCALVLVENRFTAKILSHFSNDLKRNDPDLNHV-CAQFTVSKIADPVKEPREAEIEHRKQ 764

Query: 464  KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
            +EVL+ FR  + N+L  T ++E+G+ +P C+ V+R+++P    SY QS+GRAR  +S ++
Sbjct: 765  EEVLKRFRMRECNVLVGTSLLEDGIDLPKCNLVVRYNVPTNYRSYAQSKGRARAPDSHYV 824

Query: 524  LMLERGN-------LKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-TYVKTKSYIVE 575
             ++ER N       L Q  ++  ++    S  + +   + EA     C T  K K    +
Sbjct: 825  HLIERENCDAFITDLAQFMEIEKMLLRRCSNQEPSEDEEREADLYNDCVTPYKPK----Q 880

Query: 576  STGASVTTDSSVNLIHRYCEMLPSDKY--YTPKPIFK--YKSAEEAYECELTLPSNAPF- 630
             + +SVT  +SV  ++RYC  LPSD +   TP+   +  + + ++ Y C + LP N+P  
Sbjct: 881  DSESSVTMANSVASVNRYCAKLPSDTFTRLTPQATLRRIFFNEQDMYVCTIRLPINSPVK 940

Query: 631  QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKN------- 683
            Q IVG     + L++++  +EAC  L++   L+D+L P  +E  +  ++   N       
Sbjct: 941  QDIVGHPMPTRVLARRIAAMEACRTLYEARELDDNLQPIGKERFQ--MLDSANAVEVAAD 998

Query: 684  ---------ESLPGAGTTKRKELHGTTPIRALSG-RWGEKCGVILHAYKFNFACSIVTE 732
                     +  P  GTTKR++ +      AL+  R  E    +L+       C +  E
Sbjct: 999  PDEPPPQLWDIEPRPGTTKRRQYYYKRIADALNDCRPREGIAAMLYHLDMTLTCPLPEE 1057



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 127/244 (52%), Gaps = 18/244 (7%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN--GFKKLIIFLA 100
           +F P+ YQ+++ + AK RN I  +  G  KT IA+ LI++++ + + +   + + +++L 
Sbjct: 13  SFTPKEYQVELLDAAKNRNIIVCVGNGPNKTFIALKLIQELSNSSRKSVRKYGQRMVYLT 72

Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGA-KGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            T  +V Q   V R  TD  V EY  + K +D          +++N VLVMT +   D +
Sbjct: 73  ATDTVVSQMGVVFRNLTDLNVGEYISSEKDLD----------LDENQVLVMTSEACWDFI 122

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN-KPKVFGMTASPVVRKGVSS 218
           +   L+  IV  +++DECHH+  +HP  K+M+  +H   N + +V G+T+  +   G   
Sbjct: 123 QTGQLNFKIVNLLIVDECHHSIRDHPMKKVMEACWHVLGNPEMRVVGLTSPIMPGPGGGE 182

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKES---CRFYDQSKFCGSDLKGKLE 275
               E ++  LE  L  +  T  D   +  +    KE+   C  Y+ ++ C ++L+G + 
Sbjct: 183 PGRLEAEVKRLEHALHCKAETASDIVSVLRYCSKPKETVIECDNYELTELC-AELEGHVA 241

Query: 276 VSWS 279
           ++++
Sbjct: 242 LTYT 245


>gi|195996181|ref|XP_002107959.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens]
 gi|190588735|gb|EDV28757.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens]
          Length = 685

 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 132/438 (30%), Positives = 201/438 (45%), Gaps = 51/438 (11%)

Query: 886  KTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSK 945
            +   + K  I +  G++D   L D ++   + G   S  E+       +P D    + + 
Sbjct: 51   RIASYNKTFIPIDLGNLDI--LNDAIITR-NYGNNPSYYEVAQICRHRTPVDNLWGESNL 107

Query: 946  TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKS----------- 994
             F+ Y+ EKYGI++ +  QPLLR K      N+L + N G  S    KS           
Sbjct: 108  NFITYYQEKYGIMIKNTTQPLLRPKYLSKKRNMLRS-NSGQKSQFSVKSCNKSQTQSVAD 166

Query: 995  --GMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE----- 1047
                ++K     + + PEL  R   P SV KSL  + S++ R+ES++   +   +     
Sbjct: 167  TITHHSKGKSKVIELIPELCKRSIFPASVWKSLACIRSILWRMESMLSVKEFENKMQESW 226

Query: 1048 INCHSRN-----FHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPK 1102
            I   SRN      +  +  IL+ALT     + F++E LE LGDS LKYAVS   FL+Y K
Sbjct: 227  IVGSSRNERQLQNNSLTMTILKALTLARANDDFNLETLEFLGDSYLKYAVSISFFLSYSK 286

Query: 1103 KHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPCECGV 1161
             HEGQLS+ +S  V N  L+++G    L GYI     D    WV PG  S+       G 
Sbjct: 287  FHEGQLSSLKSKIVSNENLYQIGIKMGLPGYIIGHNVDQNDIWVPPG-FSIAKKSDSIG- 344

Query: 1162 DTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAA-LYM 1220
              LE  L     +  ++V    P     + + +K IAD  EAL+G   +  G  +A  ++
Sbjct: 345  --LEEQLSTLNLSMTSRV---HPT----QKLKNKCIADVMEALLGGILLELGENSANNFI 395

Query: 1221 MKWLGIDA---DLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITH 1277
               LGI        ++ +DD   +   + Y    + +KD+E+ +GY F  + LL  A+TH
Sbjct: 396  TNNLGIKVGRLSHNIAKLDDDARKEISKIY--NAHNLKDLEAVLGYSFKDRKLLISALTH 453

Query: 1278 AS------VQEFYCYQNL 1289
            A+       +   CYQ L
Sbjct: 454  ATYNHNRIAEGVECYQRL 471


>gi|195502701|ref|XP_002098342.1| GE24009 [Drosophila yakuba]
 gi|194184443|gb|EDW98054.1| GE24009 [Drosophila yakuba]
          Length = 2250

 Score =  124 bits (312), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 132/524 (25%), Positives = 202/524 (38%), Gaps = 153/524 (29%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1725 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1784

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVPCECGVDTLEVP---------LD 1169
             L++LG  ++L  Y+  + F+P   W+ P      P   E  +   ++P         LD
Sbjct: 1785 NLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYV--PKELEKALIEAKIPTHHWKLADLLD 1842

Query: 1170 GKFFT------------------QDTKVVVGK-----------PCDMGHRWMGSKTIAD- 1199
             K  +                  Q+  V  G+            C + +  +   +I D 
Sbjct: 1843 IKNLSSVQICEMVREKAEALGLEQNGGVPNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDK 1902

Query: 1200 ----CAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDC----------------- 1238
                C EALIGAY +  G   AL  M WLG+        +D+                  
Sbjct: 1903 SIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDEASQEHRIPGSTKPNPENM 1962

Query: 1239 --------ITRASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITHASVQE 1282
                      R+ L  + P   E          + E  +GY+F  +  L +A+THAS   
Sbjct: 1963 VTVYGAWPTPRSPLLHFAPNATEELDQLLSGFDEFEESLGYKFRDRSYLLQAMTHASYTP 2022

Query: 1283 FY---CYQNL-------------------------------------------------- 1289
                 CYQ L                                                  
Sbjct: 2023 NRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGF 2082

Query: 1290 YKHLQHCSTLLLSQITEYVKSFPKPGETT------------DSGPSMKAPKALGDLLESI 1337
            +K  +H S  L   I  +V+   + G +             D    ++ PKALGD+ ESI
Sbjct: 2083 HKFFRHLSPGLNDVIDRFVRIQQENGHSISEEYYLLSEEECDDAEDVEVPKALGDVFESI 2142

Query: 1338 VGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCTLK 1395
             GA+ +D+ ++LD VW ++  ++SP +      +P  P+REL+EL      F K      
Sbjct: 2143 AGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLAD 2202

Query: 1396 GEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
            G  V   +     DV   G   G  R+ + AK  AA   L++L+
Sbjct: 2203 GRRVRVTV-----DVFCKGTFRGIGRNYRIAKCTAAKCALRQLK 2241



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 22/142 (15%)

Query: 577 TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ- 631
           TGASV   +++ L+++YC  LPSD +     +++    E A    Y+  L LP N+P + 
Sbjct: 815 TGASVDLGTAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLYQYTLRLPINSPLKH 874

Query: 632 TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSEN 676
            IVG     + L+++L  L+AC +LH++G L+D L P       ++E        EP + 
Sbjct: 875 DIVGLPMPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDE 934

Query: 677 NLISKKNESLPGAGTTKRKELH 698
            ++   +E  P  GTTKR++ +
Sbjct: 935 QIVQLSDE--PRPGTTKRRQYY 954



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG-----STTSVDA-LTPK 461
           +  LC +I+  +   A+V+   + ++    P L  L   Y T      +T   +A L  +
Sbjct: 488 SDTLCALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHR 547

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   + 
Sbjct: 548 RQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAY 607

Query: 522 FILML 526
            ++++
Sbjct: 608 HVILV 612



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 14/157 (8%)

Query: 903  DAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 958
            DA+  +D VV+  +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ 
Sbjct: 1126 DAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLT 1182

Query: 959  LIHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELL 1012
            + +  QPLL +  +    N L     N  G     S + +K        Q  + + PEL 
Sbjct: 1183 IQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELC 1241

Query: 1013 VRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEIN 1049
                 P S+ ++   LP ++ R+  L+LA  +R++++
Sbjct: 1242 TVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVS 1278



 Score = 47.8 bits (112), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 93/200 (46%), Gaps = 21/200 (10%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F PR +Q+++   A  RNTI  L   + K  IA+ L++++++  +  G  ++ ++L+  V
Sbjct: 15  FTPRDFQVELLAAAYERNTIICLGHRSSKEFIALKLLQELSRRARQRG--RVSVYLSCEV 72

Query: 104 HLVHQQ---YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
               +    Y ++   TD  V +      +  +D  CW        V ++ P+  L  L 
Sbjct: 73  GTSTEPCSIYTMLTHLTDLRVWQEQPDMQI-PFD-HCW----TDYHVSILRPEGFLSLLE 126

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSS 218
              L L  V  IV+++CH +       ++ +E    +   ++P++ G+ A P+   G   
Sbjct: 127 DRELLLSSVELIVLEDCHDSAVYQRIRRLFEEHIMPAAAVDRPRILGL-AGPLHSAG--- 182

Query: 219 AMDCE-GQISELESTLDSQV 237
              CE  Q+S + +TL+  V
Sbjct: 183 ---CELQQLSAMLATLEQSV 199


>gi|336373452|gb|EGO01790.1| hypothetical protein SERLA73DRAFT_85682 [Serpula lacrymans var.
            lacrymans S7.3]
          Length = 1354

 Score =  124 bits (312), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 194/446 (43%), Gaps = 61/446 (13%)

Query: 887  TGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKT 946
            T  + ++V  LAN + DA  ++D  V    T R Y +    + S    P D   +     
Sbjct: 658  TPLNWRNVEDLANDTADAV-IQDRWVE--FTRRYYVVKTRPDLSPMSKPADSPREAAYPN 714

Query: 947  FVNYF-SEKYGI-VLIHPGQPLLRLKQSHNPHNLLV-NFNDGGGSGKGSKSGMNTKKPQM 1003
             + Y  S + G+  L+   QPL+ + ++    N L   F     S K S           
Sbjct: 715  LLEYCKSRRKGLDCLVDQEQPLIEVSKTPGLSNHLSPTFRPLTTSAKASAK--------- 765

Query: 1004 HVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLIL 1063
              ++ PEL  ++ +P S +++  LLPS+ +R++ +++     +E+N    N HI   L+L
Sbjct: 766  --YLIPELCAKLTIPASTLRTALLLPSISRRIDDILIV----KELNAKFFNHHITEELLL 819

Query: 1064 EALTTLGCCESFSMERLELL-GDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
             A++T      +  ERLE+L GD+ LKY  S ++F+T P K+EG L   R   + N  L 
Sbjct: 820  AAISTPSAGFDYDYERLEVLAGDAFLKYLSSIYVFVTNPAKNEGALHVSRQQIISNKALL 879

Query: 1123 KLGTDRKLQGYIRDSAFDPRRWVAPG--QLSLRP--VPCECGVDTLEVPLDGKFFTQDTK 1178
            K      L  +I+   F  + W  P    +S+R    P +      + P       ++T+
Sbjct: 880  KTACTVGLPPFIQSRPFSYKVWQPPNFSLVSIREDFTPNDDTKKISKAPSQSPLARKETE 939

Query: 1179 VVV--------------GKPCDMGH----------------RWMGSKTIADCAEALIGAY 1208
             ++              GK     H                +W+G K IAD  EA+IGA 
Sbjct: 940  AIMEAPPKKIESEDSVKGKALPGSHASSKKENRGQQDTQYTQWLGDKAIADVVEAIIGAA 999

Query: 1209 YVGGGLIAALYMMKWLGI---DADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEF 1265
            Y+ GG   AL   K L I   + +         +T     +   R   I+ +E+ IG++F
Sbjct: 1000 YISGGRDLALTTAKTLDIPIRNIEHWADFGRKALTPPPRVTAKLRDGSIEAVETIIGHKF 1059

Query: 1266 TVKFLLQEAITHASVQEFY--CYQNL 1289
                LL +A+THASVQ +   CY+ L
Sbjct: 1060 AYPHLLAQALTHASVQGYQSTCYERL 1085


>gi|111226989|ref|XP_001134628.1| hypothetical protein DDB_G0294407 [Dictyostelium discoideum AX4]
 gi|90971302|gb|EAS66962.1| hypothetical protein DDB_G0294407 [Dictyostelium discoideum AX4]
          Length = 837

 Score =  124 bits (311), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 141/531 (26%), Positives = 236/531 (44%), Gaps = 64/531 (12%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQ +++  +  ++ I  L TG GKT+I+ ++IK + Q   S    K I+F+   + L
Sbjct: 232 PRDYQCELYRKSMEKDIICCLPTGLGKTLISCLVIKKMKQLNPS----KQIVFIVDRIPL 287

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V QQ DVI   T  +V     A G      Q  Q+     DVLV+   +    L    L+
Sbjct: 288 VIQQSDVIETETGLKV---LSAHGETFKPVQLKQRF----DVLVVIGDLFNKLLSNGDLN 340

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN--KPKVFGMTASPVVRKGVSSAMDCE 223
           +   C IVIDE HH    H + K++++  +       PK+ G+TASP  +K   + +   
Sbjct: 341 ILSFCLIVIDEAHHIVKEHSFAKLLRDKLNTIPEICHPKILGLTASPAGKKDFFNTLLSL 400

Query: 224 GQISE------LESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
             IS+      ++ T  S +  I  K    + +P+           K   S  K  L  +
Sbjct: 401 KLISKVSRCEIIKPTNQSIIPYINQKNIKIIPIPTNNLERHSIQILKDLISKYKPNLSNN 460

Query: 278 WSKFDASLSKLQGSQLN--------CYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
              FD+  S +  + L            +   ++  L K LS +  KI    D +     
Sbjct: 461 QELFDSVTSVIDSNTLKGLGVGGGGGGSNSSTQNHNLNKFLSSFFEKI---NDFINFKMF 517

Query: 330 YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKA 389
             A+ + L   LK+    EI     ++ +  +  ++H +     +AD I           
Sbjct: 518 GSAIPVGLN--LKSFLIEEISNIDDVELQSEILAMVHSLPCDEEIADSI----------- 564

Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVE-----RFVKKVPFLT-H 442
                  +KL   LQ+ L   KS  +  IIFV+ R +A KV       R   +  F+  +
Sbjct: 565 -------SKLEIALQI-LDEKKSDDLKAIIFVKTRDVAKKVYSLLDQLRMGDRFSFIKPN 616

Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
           L V +      S+  ++   QK+ +E FR  + N++ AT V+EEG  VP C+ VIR D P
Sbjct: 617 LVVGH-----GSIGGMSISSQKKAIEEFRSDQCNVIVATSVVEEGFDVPECNIVIRLDPP 671

Query: 503 KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALS 553
            TV++ IQSRGR R  +S F  +++  + ++ N +++  +++    + A++
Sbjct: 672 TTVTANIQSRGRLRNRDSYFYGIVKVDDPREDN-IYEFFKNQERYLEEAIN 721


>gi|307190121|gb|EFN74275.1| Endoribonuclease Dcr-1 [Camponotus floridanus]
          Length = 1976

 Score =  124 bits (310), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 166/709 (23%), Positives = 290/709 (40%), Gaps = 125/709 (17%)

Query: 403  LQLFLSFGKSTQVLC-IIFVERIIAAKVVERFVKKV-------PFLTHLTVAYLTGSTTS 454
            LQ +        +LC +IFV++   AK++   + ++        FL+ L          +
Sbjct: 430  LQRYPCNSADPDLLCGVIFVDKGFTAKILFYLLSEICKHDEDLHFLSPLYTIERNNDDVN 489

Query: 455  VD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
                  +  + Q+EVL+ FR  + NLL AT ++EEG+ +P C++V+R+D PK   SY+Q 
Sbjct: 490  YSRDLEIEHRKQEEVLKRFRIHECNLLIATSILEEGIDIPKCNFVMRYDFPKNYQSYVQC 549

Query: 512  RGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTAL------SRDPEACFLKACT 565
            + RAR  ++  +L++     ++ +K F    ++    +  L          E    +A  
Sbjct: 550  KSRARAVDALHVLLVP----QEASKDFIWQLAQYQYIEKTLLLKCSNKELTEEEENEADM 605

Query: 566  YVKTKSYIVESTG---ASVTTDSSVNLIHRYCEMLPSDKY--YTPKPIFKYKSAEEA--Y 618
            Y     +     G     VT +S+++L++RYC  LPSD +   TP+   +  + +E   Y
Sbjct: 606  YAAMIPHYKPLNGDDAPKVTFNSAISLVNRYCAKLPSDTFTRLTPEWSIEVVNIQETIMY 665

Query: 619  ECELTLPSNAPFQTIVGPTSR-NKNLSKQLVCLEACEKLHQVGALNDHLLPSVEE----- 672
             C L LP N+P + +V      N+ +++++  L+ C  LH+   ++D+LLP  +E     
Sbjct: 666  TCSLRLPINSPLKYVVTSYPMPNRAMARRMAALQMCVDLHRENEIDDNLLPIGKENFKAK 725

Query: 673  PSENNLISKKNESLPG-----AGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN--F 725
            P +  + +  +ES         GTTKR++ +      AL+       GV  + Y  N   
Sbjct: 726  PEDAEVPALPDESRTDFSEARPGTTKRRQYYYKKTAEALTD-CRPIVGVPSYLYHINMIL 784

Query: 726  ACSIVTE-------IYS------GFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQ 772
            +C +  E       IY       GF +L   E+          +Y  S  V   +  S Q
Sbjct: 785  SCPLPEEQNTRGRRIYPPEESAIGFGILTLKEIPKLCP---FPIYTRSGEVHVQLKLSKQ 841

Query: 773  -VHLDADQMSKAKCFQELFFNGL-----FGKLFVKSKSSGSREFFLKRETNSLWSPSYMY 826
             + LD  Q+ +   F    F  +     +  LF  + S  S                  Y
Sbjct: 842  TIILDEVQVERVDTFLNYTFTNVLRLQKYLMLFDPNASENS------------------Y 883

Query: 827  LLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCK 886
            +++P++I  T       ++W                +FL     N N          P K
Sbjct: 884  IIVPVKIFTTDEGSDVCVDW----------------NFLECIYQNRNA--------VPTK 919

Query: 887  TGCHGKDVIHLANGSVDAKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDD 942
                 +      N   D     D V++  +      + + + EI  N + +S F G+   
Sbjct: 920  VPEEDR-----KNFKFDPSKYYDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPGH--- 971

Query: 943  DSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGM 996
            D  TF  Y+ +KYGI + +  Q LL +  +    N L     N  G     S + +K   
Sbjct: 972  DYSTFEEYYLKKYGIQIQNLEQSLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 1031

Query: 997  NTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
                 Q  + +  EL      P S+ +    LP ++ R+ +L+LA+Q+R
Sbjct: 1032 RENLEQKQI-LVAELCAIHPFPASLWRQAVCLPCILYRINALLLANQIR 1079



 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 129/319 (40%), Gaps = 92/319 (28%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            SLIL+ALT     +  ++ERLE +GDS LKYA++ +L+ TY   HEG+LS  RS  V N 
Sbjct: 1440 SLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNL 1499

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL---SLRPVPCECGV----------DTLE 1165
             L++LG  + L   +  + F+P   W+ P       L     E GV           TL+
Sbjct: 1500 NLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELEQALIESGVPSALWNQADIPTLQ 1559

Query: 1166 V--PLDGKFFTQDTK---VVVGKPCDMGHRWMGS---------------------KTIAD 1199
               P +     ++T+   V++    D     M +                     K+IAD
Sbjct: 1560 AVNPTEITQLVRETEEKLVIMKSELDKNESRMSNNLDNLRCFIPYNLITQHSIPDKSIAD 1619

Query: 1200 CAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRAS---------------- 1243
            C EALIGAY +  G   AL  M WLGI     +   + C+   S                
Sbjct: 1620 CVEALIGAYLIACGPRGALLFMTWLGIHV---LPAEEVCVMSESEPEERIPGSTPYVKGI 1676

Query: 1244 ----------------------LRSYVPRI-NEIK-------DIESKIGYEFTVKFLLQE 1273
                                  L  Y+P   NE++       ++E  IGY+F     L +
Sbjct: 1677 SEQGGATWTQICYGKLEEPQNPLLRYIPDPENELRMMLDGYDELEKSIGYKFRDSSYLLQ 1736

Query: 1274 AITHASVQEFY---CYQNL 1289
            A THAS Q      CYQ L
Sbjct: 1737 AFTHASYQPNRLTDCYQRL 1755



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 9/116 (7%)

Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDS 1383
             PKALGD+ ES+ GA+ +D+ ++LD VW ++  I+   +      +P  P+REL+EL   
Sbjct: 1854 VPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFSTNVPKSPIRELLELEPE 1913

Query: 1384 LGYFVKENCTLKGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
               F +      G  V   +     DV   G  +G  R+ + AK  AA   LKKL+
Sbjct: 1914 TAKFGRPEKLADGRRVRVTV-----DVFGKGSFKGIGRNYRIAKCTAAKCALKKLK 1964



 Score = 44.3 bits (103), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 103/236 (43%), Gaps = 17/236 (7%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA----QAIKSNGFKKLIIFL 99
           F PR YQ+++   AK +N I  L   + +T +A+ LI++ A    ++I   G + + I  
Sbjct: 14  FTPREYQVELLYAAKEKNIIVCLGKNSEQTFLAIKLIQEFATNNRRSISDGGKRTIYILN 73

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
                 +   Y  I+  TD +V         +    + + +   ++ VLV T ++    +
Sbjct: 74  DEDKCTIIATY--IKQLTDLKV------LACNSNIFKEFAEHFERSHVLVGTAKVYAQLI 125

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSA 219
            ++ L    +  +++DECH +  +     +++ F    +N P++ G+ A PV      S 
Sbjct: 126 SESKLLSCHINLVIVDECHKSIEDSNLKFVLQTFL-LCNNVPRIIGL-AVPVFNLTQESG 183

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275
                +I ++E+     + T  D   +  + P  +E    YD+ +    DL   LE
Sbjct: 184 R-LGLEIEKVEAAFQCNLETANDILSVIRYSPKPREYIVEYDKGE--KKDLYNMLE 236


>gi|322707759|gb|EFY99337.1| Dicer-like protein 2 [Metarhizium anisopliae ARSEF 23]
          Length = 1442

 Score =  123 bits (309), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 21/226 (9%)

Query: 17  SPNPPDMGSSGHDHAVDGPSSSTNSINFI-PRIYQLKVFEVAKRRNTIAVLETGAGKTMI 75
           SP      +S    A D  +S T S   + PR YQL++ + + ++N I V++TG+GKT +
Sbjct: 54  SPQEQLEDASHQGIACDNETSGTPSATAMSPRAYQLEMLDQSLKQNAIVVMDTGSGKTQV 113

Query: 76  AVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWD 134
           AV+ IK     +  +   K+I FLAPTV L  QQ+DVIR+      ++   G   VD W 
Sbjct: 114 AVLRIK---AELDRSAPDKIIWFLAPTVALCGQQFDVIRLQAASVAMKLLTGNDQVDTWS 170

Query: 135 SQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194
           +  W   ++   V+V T Q+LLDAL  AF+S+D    I+ DE     G HP +KIM +FY
Sbjct: 171 ADTWDTILDGVRVVVSTYQVLLDALCHAFISIDRFSLIIFDE-----GKHPGSKIMTDFY 225

Query: 195 HKSDNK----PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQ 236
           H + +     P + G+TA+P +++ + +       +  LE+ LD++
Sbjct: 226 HHNKHAAKSIPNILGITATPSMKEDLEN-------MEILEAVLDAK 264



 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 132/297 (44%), Gaps = 49/297 (16%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLR----EEINCHSRNFHIPSSLILEALTTLGCC 1072
            +P+   +   L+PS+M  LE  ++A +L     E IN           L+ EA+++    
Sbjct: 948  IPLKFAQFGMLIPSLMHELEVTLIAKELSTTILERINITDLR------LVREAISSRSAA 1001

Query: 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQG 1132
            E  + ERLE LGDS+LKY  +  +   +P+  EG LS  +   V NS L +   D  L  
Sbjct: 1002 EPVNYERLEFLGDSILKYCTAIQVSAIHPEWPEGYLSFFKDRLVSNSRLSRAAIDVGLAK 1061

Query: 1133 YIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWM 1192
            +I    F  ++W        RP+  E                       G P  +  R +
Sbjct: 1062 FILTKTFTGQKW--------RPLYLEN--------------------YTGNPGKVSPRKL 1093

Query: 1193 GSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASL----RSYV 1248
             +KT+AD  EALIGA YV GG+  AL  +  L ++   E+   D    RA      R   
Sbjct: 1094 STKTLADVVEALIGASYVNGGITKALSCIS-LFVN---EIQWQDVSANRALFFKMARDQD 1149

Query: 1249 PRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNL-YKHLQHCSTLLLSQI 1304
                E+K +E  +GY+F  K LL EA+TH S    + YQ   Y+HL+     +L  I
Sbjct: 1150 KLPAELKPLEHLVGYQFNKKSLLIEAMTHQSC--MFDYQRRSYEHLEFIGDAILDFI 1204



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 150/326 (46%), Gaps = 54/326 (16%)

Query: 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL-TVAYLTGSTT 453
           +S K   L++  +S  +ST  +C+IFV+    A  +  F+   P +     +  + G++ 
Sbjct: 422 VSEKATALVRELVSVEEST--VCLIFVKERATAGALREFLVSCPRIVEKHRIGSMVGTSN 479

Query: 454 SVD---ALTPKVQKE-----VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTV 505
                 AL   V +       L+SFR GK+N+L AT V+EEG+ VP C+ VI FD P+T 
Sbjct: 480 YQSRKLALYELVGQSSDPMAALQSFRSGKINILIATSVLEEGIDVPACNMVICFDHPQTP 539

Query: 506 SSYIQSRGRARQHNSQFILMLERGN--------LKQRNKLF--DIIRSERSVTDTALSRD 555
            S++Q RGRAR   S+ IL+ E  +        L++  K    D  R  R++     S +
Sbjct: 540 KSFLQRRGRARMKESKLILLSEHSSSAVAKWEALEENMKAVYQDTQREIRAIQSMENSEE 599

Query: 556 PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE 615
             + F++           VESTGA +  +++ + +  +C +L   ++   +P +   S E
Sbjct: 600 SSSTFME-----------VESTGARLDFENAKSHLEHFCRVLSQGEFVDSRPDYIIHSHE 648

Query: 616 EA-------YECELTLPSNAPFQ--TIVGPTS-RNKNLSKQLVCLEACEKLHQVGALNDH 665
           +            + LPS  P Q   I    S R++  + +    +A + L++ G +N H
Sbjct: 649 DCDSSSKPRLSATVLLPSFVPSQLRQIDSKFSWRSEKNATKDAAFQAYQTLYEAGLVNKH 708

Query: 666 LLPSVEEPSENNLISKKNESLPGAGT 691
           LLP             K E +PG  T
Sbjct: 709 LLPF------------KYEDIPGVET 722


>gi|328716579|ref|XP_001944314.2| PREDICTED: endoribonuclease Dcr-1-like isoform 1 [Acyrthosiphon
            pisum]
          Length = 1609

 Score =  123 bits (309), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 191/482 (39%), Gaps = 122/482 (25%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S++L+ALT     +  ++ERLE +GDS LKYA++ +L+ T+   HEG+LS  RS  V N 
Sbjct: 1125 SVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQVSNL 1184

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP---------GQLSLRPVPCE----CGVDTLE 1165
             L++LG  +     +  + F+P   W+ P           L    +P        + T +
Sbjct: 1185 NLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEKALINASIPTTLWNMITLPTFK 1244

Query: 1166 VPLDGK-----------FFTQD---TKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVG 1211
             P D +           F  +D   T + V       H  +  K+IADC EALIGAY + 
Sbjct: 1245 DPTDKEIEEVIQQFKVGFSNEDIENTPLFVPYNLVTQHS-IPDKSIADCVEALIGAYLIS 1303

Query: 1212 GGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD--------------I 1257
             G   AL  M WLGI     +  +DD           P +  + D               
Sbjct: 1304 CGARGALLFMSWLGIRV---LPTLDDSKLGYLKPPSSPLLRNVDDPEGELTKLMDGFESF 1360

Query: 1258 ESKIGYEFTVKFLLQEAITHASVQEFY------CYQNL---------------------- 1289
            E  +GY F  +  L +A+THAS   +Y      CYQ L                      
Sbjct: 1361 EQHLGYHFQDRSYLLQAMTHAS---YYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDKRQ 1417

Query: 1290 ----------------------------YKHLQHCSTLLLSQITEYVKSFPKPGETTD-- 1319
                                        +K+ +H S  L   +  +V    + G T D  
Sbjct: 1418 HSPGALTDLRSALVNNTIFASLAVRNGFHKYFKHLSPGLSDVVCRFVTIQEENGHTIDEE 1477

Query: 1320 ----------SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKL 1369
                          ++ PKALGD+ ES+ GA+ +D+ ++LD VW+++  I+   +     
Sbjct: 1478 FYFLGEDDCEEAEDVEVPKALGDVFESVAGAIYLDSNMSLDTVWKVYHKIMENEMEQFSK 1537

Query: 1370 ELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGK 1427
             +P  P+REL+EL      F K      G  V   + +  K      +G  R+ + AK  
Sbjct: 1538 NVPKSPIRELLELEPETAKFSKPEKLADGRRVRVVVEIFGKGEF---KGIGRNYRIAKCT 1594

Query: 1428 AA 1429
            AA
Sbjct: 1595 AA 1596



 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 143/306 (46%), Gaps = 45/306 (14%)

Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
           K Q+E L  FR  + N+L  T V+E G+ +P C+ VI +++P +  SY++S+ RA+  ++
Sbjct: 246 KKQEETLRRFRQRECNVLIGTKVLEAGIDLPRCNLVINYNIPLSYKSYLRSKSRAKTLDA 305

Query: 521 QFILMLER---GNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-----TYVKTKSY 572
            +ILM +     N+  R KL+      + +    LS     C LK       TY    ++
Sbjct: 306 HYILMFDEDATSNILSRLKLY------KDINQMLLSH----CTLKDIDMEKETYADRYNW 355

Query: 573 IV-------ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA----EEAYECE 621
            V       +   A V   +++ L++RYC  LPSD +    PI+K +S     +  + C 
Sbjct: 356 FVTPFKPGKKEDSAFVDMATAIGLVNRYCAKLPSDTFTKLSPIWKTQSVVYENQPMFVCS 415

Query: 622 LTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEP------- 673
           + LP N+P +  I G     + L+K++  LE C +LH  G L+D L P  +E        
Sbjct: 416 IRLPINSPIKHDIHGHPMPCEILAKRIAALEVCRQLHSHGELDDTLQPITKESFHALFNA 475

Query: 674 ------SENNLISKKNESLPGAGTTKRKELHGTTPIRALSG-RWGEKCGVILHAYKFNFA 726
                 +E+ LI    E  P  GT KR++ +      AL+  R  E     L+A   N  
Sbjct: 476 DEVLPDAEDALIPWDTEE-PRPGTNKRRQYYYKRIAEALNDCRPVENKPCHLYAILLNMN 534

Query: 727 CSIVTE 732
           C +  E
Sbjct: 535 CPVPEE 540



 Score = 45.4 bits (106), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 12/157 (7%)

Query: 899  NGSVDAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEK 954
            N   D   LKD VV   +  +     + + EI  + + +SPF G+ ++  KTF +Y+  K
Sbjct: 673  NFQPDIDVLKDAVVTPWYRNQEQPQYFYVAEICTHLNPKSPFPGSIEN-YKTFEDYYYLK 731

Query: 955  YGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHMP 1008
            Y + + +  QPLL +  +    N L     N  G     S   +K        Q  + + 
Sbjct: 732  YSLKIQNLEQPLLDVDHTSARLNFLTPRYMNRKGVILPTSSDATKRAKRDNLSQKQI-LV 790

Query: 1009 PELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
            PEL      P S+ +    LP ++ R+ +L+LA ++R
Sbjct: 791  PELCNVHLFPASMWRKAVSLPCILYRINALLLADEIR 827


>gi|400598379|gb|EJP66096.1| RNase3 domain-containing protein [Beauveria bassiana ARSEF 2860]
          Length = 1402

 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 105/183 (57%), Gaps = 16/183 (8%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQL++   + + N I  ++TG+GKT IA++ I+  AQ ++S   +K+I FLAPTV L 
Sbjct: 28  RAYQLEMLRRSLKDNVIVAMDTGSGKTQIAILRIR--AQ-LESTSDQKVIWFLAPTVLLC 84

Query: 107 HQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            QQ+D I++      +    G+  V  W S  W+  +N    +V T Q+LLDAL  AF+ 
Sbjct: 85  AQQFDAIKLEIPSISMRLVVGSDNVHTWSSSTWKSLLNGTQAVVSTYQVLLDALDHAFVK 144

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYH---------KSDNKPKVFGMTASPVVR--- 213
           LD +  ++ DE H+  G++P  KIMK FYH            N+P + G+TA+P ++   
Sbjct: 145 LDRLSLLIFDEAHNCVGSNPGGKIMKHFYHYQGLRQDADDGSNRPAILGLTATPSMKAHI 204

Query: 214 KGV 216
           KGV
Sbjct: 205 KGV 207



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 36/226 (15%)

Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFIL 524
           + L+ FR G+VNLL AT V+EEG+ +P C+ VI FD PK   S+IQ RGRAR  +SQ I+
Sbjct: 451 KTLQDFRRGEVNLLVATSVLEEGIDIPACNLVICFDSPKNPKSFIQRRGRARMQDSQLII 510

Query: 525 MLERGN-LKQRNKLF-DIIR-----SERS----VTDTALSRDPEACFLKACTYVKTKSYI 573
              +G+ L     +F D I+     SER      T   L  D + CF             
Sbjct: 511 FTHQGHSLTDHWAIFEDEIQKLCQDSERERQQLQTLERLDEDVDFCFR------------ 558

Query: 574 VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKP--IFKYKSAEEAYE----CELTLPSN 627
           V  TGA +  +++   +  +C ++ S +Y   +P  I K+ S +  ++     E+ LP++
Sbjct: 559 VPHTGARLDPENAKQHLEHFCRVISSQEYTDGRPDYITKFTSGDHDHDQLVSAEVFLPAS 618

Query: 628 AP-----FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
            P     FQ++   + R++  + +    +A   L+Q G +N +LLP
Sbjct: 619 LPTKLRHFQSL--RSWRSEANAMKDAAFQAYLALYQAGLVNKNLLP 662



 Score = 77.0 bits (188), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 37/257 (14%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDS 1086
            L+PS++  +E++++A  L   +           SL+ +A++     E  + ERLE LGDS
Sbjct: 914  LIPSIIHTIETMLIARHL--SVTLLKPLELTDYSLVRDAISARSAYEPTNYERLEFLGDS 971

Query: 1087 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVA 1146
            +LK+  S     T     EG L+  +   V NS L +   +  L  +I    F  ++W  
Sbjct: 972  ILKFCASMQAGATNLSWPEGYLTRYKDRLVANSRLSRAAVETGLAKFILTVPFTAQKW-- 1029

Query: 1147 PGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
                                     FF +   ++ GK      R M +K +AD  EAL+G
Sbjct: 1030 -----------------------HPFFLE--TILSGKMKPFKKREMSTKVLADVVEALVG 1064

Query: 1207 AYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPR----INEIKDIESKIG 1262
              Y+ GG+  A+  +  + I+   E   +D    R    +  P      + +  +E  IG
Sbjct: 1065 VAYIAGGIPKAIQCLS-IFIN---ECDWIDPSECREEFFACAPSHCVDSSYLHILEELIG 1120

Query: 1263 YEFTVKFLLQEAITHAS 1279
            Y FT K LL EA THAS
Sbjct: 1121 YSFTKKSLLLEATTHAS 1137


>gi|157272171|gb|ABV26717.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide [Sus scrofa]
          Length = 943

 Score =  123 bits (308), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 144/540 (26%), Positives = 247/540 (45%), Gaps = 72/540 (13%)

Query: 46  PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           PR YQL++   A+  +NTI    TG GKT +++++ +   +     G K  ++F A  + 
Sbjct: 242 PRNYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKF-PQGRKGKVVFFAIQLP 300

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           +  QQ  V   H +    +  G  G    D+ C ++ +  ND++++TPQIL++ L    +
Sbjct: 301 VYEQQKSVFSKHFERLGYKVAGISGATS-DTVCVEQIVENNDIIILTPQILVNCLTNGTI 359

Query: 165 -SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSS 218
            SL +   ++ DECH+ +  HPY  IM  +  +     SD+ P+V G+TAS  V    + 
Sbjct: 360 PSLSVFTLMIFDECHNTSKQHPYNVIMFNYLDRKLGGSSDSLPQVIGLTASVGVGDAKNK 419

Query: 219 AMDCEGQISELESTLDSQVF-TIEDK-TEME--VFVPSA---KESCRFYDQSKFCGSDLK 271
           A   E  I +L ++LD+ V  T+ D   E+E  V+ P     K   R  D+ K   S L 
Sbjct: 420 AEATE-YICKLCASLDTSVIATVRDNLEELEEVVYKPQKFFRKVELRTTDRFKCIISQLM 478

Query: 272 GKLE-VSWSKFD-------ASLSKLQGSQLNCYK---------------DMDDKHKTLR- 307
            ++E ++ S F+         L ++Q S     K                M DK K  R 
Sbjct: 479 MEIESLAKSIFEELGTITLGGLFQIQNSNFGTQKYEQWIVKVQKECAVFQMPDKDKESRI 538

Query: 308 -KQLSDYHAKILYCLDELGLICAYEAVKICLE------KVLKAQEECEIYRQSSLQCKYF 360
            K L  Y + +    D L +I  +  +K  L+      + ++A    EI +  + + +  
Sbjct: 539 CKALFSYMSHLRIYNDAL-IINEHARMKDALDYLKDFFRNIRAAGFDEIEQDLTQRFEEK 597

Query: 361 LEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIF 420
           L+E+           + I +D   +  K  DL +I  + + L         + +   I+F
Sbjct: 598 LQEL-----------ESISIDPSNENPKLRDLCFILQEEYHL---------NPETRTILF 637

Query: 421 VERIIAAKVVERFVKKVPFLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRGGKVN-L 477
           V+       +++++K+ P L+ L  + LT  G T     +T   QK VL++FR  K N +
Sbjct: 638 VKTRALVDALKKWIKENPKLSFLKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKI 697

Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           L  T V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+    +L  + K+
Sbjct: 698 LITTSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTANADLIDKEKM 757


>gi|260814153|ref|XP_002601780.1| hypothetical protein BRAFLDRAFT_76000 [Branchiostoma floridae]
 gi|229287082|gb|EEN57792.1| hypothetical protein BRAFLDRAFT_76000 [Branchiostoma floridae]
          Length = 1211

 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 121/510 (23%), Positives = 222/510 (43%), Gaps = 58/510 (11%)

Query: 60   RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119
            +N I    TG+GKT+++ ++ +      K        +F+ P  +L  QQ D   +    
Sbjct: 555  KNAIITCATGSGKTLVSALVAERAWSEAKRKDLPFKALFIVPIRNLTKQQKDQFEMLFPL 614

Query: 120  EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH 179
             V +  G       D++   + + K D++++T QI++++L+   L L  +  +++DECHH
Sbjct: 615  GVVQEIG-------DTEELSETLKKRDIVMLTAQIVVNSLKAGSLDLTDLDQLILDECHH 667

Query: 180  ATGNHPYTKIMKEFYHK----------SDNKPKVFGMTASPVVRKGVSSAMDCEGQISEL 229
             T +HPY +IM+ +  K            + P+V G+TAS     GV  + +    + EL
Sbjct: 668  TTLDHPYNQIMRYYLLKKAELALANPHQKSLPQVIGLTAS----LGVGGSGNALQHLIEL 723

Query: 230  ESTLDS----QVFTIEDKTEMEVFVPSA-----KESCRFYDQSKFCGSDLKGKLEV---- 276
             ++LD+     V   +D+    VF P A      +  + +D        L  +LE     
Sbjct: 724  SASLDASRVDHVKENKDELRRHVFTPDAIHILSGQPRKPHDPFSTALDSLMQRLESKVFP 783

Query: 277  SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQL--SDYHAKILYCLDELGLICAYEAVK 334
                +D    + +   +   K+ +   KT+R +L  + Y       L     + A +A+ 
Sbjct: 784  DTCPYDRGTQQCENWIVERVKEAE--AKTMRNELIVAQYLFDFNRALRLFTKLRAADAIA 841

Query: 335  ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGY 394
               EK+   Q   E+     L    F  +    I   L +           Y++  +  +
Sbjct: 842  FLDEKMY--QSRAELKGPPKLPIDKFCYQQFDQIREELCV-----------YAEEEETQF 888

Query: 395  ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTT 453
             +  L +L  L +      +   I+  ++    + + ++V++   L   +    L G   
Sbjct: 889  PNPMLQQLRSLLIQKFNEPESYGIVLTQQRRETEAIVQYVEEQDVLQGKMRAKRLVGQGK 948

Query: 454  SVD-ALTPKVQKEVLESFRGG-----KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
              D A+T   Q  VL+SFR G       NLL ATDV +EG+ +P C++VIR+D       
Sbjct: 949  LEDKAITDAQQMAVLKSFRKGLSSEDGCNLLVATDVAQEGLDMPKCNFVIRYDFVSNEIG 1008

Query: 508  YIQSRGRARQHNSQFILMLERGNLKQRNKL 537
             +Q+RGRAR  +++  L++  G+  +R +L
Sbjct: 1009 SVQARGRARAKDAECYLLVTAGSTNERREL 1038


>gi|226294068|gb|EEH49488.1| Dicer [Paracoccidioides brasiliensis Pb18]
          Length = 1423

 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 131/548 (23%), Positives = 231/548 (42%), Gaps = 54/548 (9%)

Query: 127 AKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPY 186
           A   D W  + W++  +KN ++V T ++L   L  +F+ ++ +  ++ DE HH   +HPY
Sbjct: 121 ALQTDLWSKETWKRHFSKNMIIVCTAEVLYQCLLHSFIQMEQINLLIFDEAHHTKKDHPY 180

Query: 187 TKIMKEFY---HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDK 243
            +I+K+FY    +S ++PK+FGMTASP     V + +D    +  LE  LDSQ+ T  + 
Sbjct: 181 ARIVKDFYLQMTESQHRPKIFGMTASP-----VDAKVDVVTAVKSLEMLLDSQIATASNL 235

Query: 244 TEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKH 303
             +   V    E    YD+                  F+  L K   SQ   + ++    
Sbjct: 236 DALRQSVARPTEQEWVYDRLD--------------PAFETDLYKSMHSQ---FGNISVLK 278

Query: 304 KTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEE 363
           K     L        +C D L  I   E     LE  +  +      R SS      ++E
Sbjct: 279 KMFICSLEATSTLGRWCSDWLWTIVLDEPSLPKLEGSISRR----YIRTSSGNHTKGVDE 334

Query: 364 VLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHEL-LQLFLSFGKSTQVLCIIFVE 422
           ++  +  A+    K+  D  F Y+      ++S K+  L  QL   F + T   C++FVE
Sbjct: 335 MIKSLREAV----KVIKDHTF-YTPVDCPEHLSPKVRLLHHQLSKYFERHTDTKCVVFVE 389

Query: 423 RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV---DALTPKVQKEVLESFRGGKVNLLF 479
           +  +A+++      +    H+    L G  T     + ++ + Q   L  FR G++N L 
Sbjct: 390 KRHSARLLGELFSLIG-TRHMRTGVLIGVRTDEAGGEKVSFRQQFWTLLKFRKGELNCLV 448

Query: 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
              +    + VP  +Y +++       + I  R       ++ I+     +L +      
Sbjct: 449 CFMIAPPKIFVPLFNYDMQYAHMMERDNLIHQRCLDEAQEAENIMRQFCESLPEDR---- 504

Query: 540 IIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPS 599
           IIR      D  L +  E C          K++ V STG+ +T +S++ ++  Y   L  
Sbjct: 505 IIRGASDELDKFLYK--ERC---------RKTFTVPSTGSKLTYNSALAVLAHYASSLQY 553

Query: 600 DKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQV 659
           +   + +  +       A+ CE+ LP  +P + + G  +  K  +KQ    E C  L + 
Sbjct: 554 ENEMSTRANYFIHRIRGAFVCEVVLPEKSPVRGLTGRPAVAKLSAKQSAAFETCLMLRKN 613

Query: 660 GALNDHLL 667
           G L+D+ L
Sbjct: 614 GLLDDYFL 621



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 139/571 (24%), Positives = 203/571 (35%), Gaps = 160/571 (28%)

Query: 963  GQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVV 1022
             QP++R +      NLL    D     KG ++           ++ PE L    +P  V 
Sbjct: 868  NQPVVRAELVRLRRNLL----DRTTEHKGEETS---------YYICPEPLRISALPAPVA 914

Query: 1023 KSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT--------------- 1067
               +  P+++ R+ES ++A +      C+     I   L LEALT               
Sbjct: 915  VFAFTFPAMISRIESYLIALE-----ACNKLQLTIIPELALEALTKDSDNTEEHRAEQIH 969

Query: 1068 -TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
               G  +++  ERLE LGD  LK + S  LF       E     +R   +CN  L     
Sbjct: 970  FQRGMGKNY--ERLEFLGDCFLKMSTSISLFAMNADDDEFDFHVKRMCLICNQNLFNTAM 1027

Query: 1127 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD 1186
               +  ++R   F  R W   G + L               L GK  ++  +        
Sbjct: 1028 SLGIYEFVRTQGFSRRNWYPEG-IKL---------------LQGKAKSETAE-------- 1063

Query: 1187 MGHRWMGSKTIADCAEALIGAYYVGGGLIAAL-YMMKWLGIDADLEVSLVDDCITRASLR 1245
                 +  K+IAD  EALIGA  + GG +      +K +    + E   V D  +   L 
Sbjct: 1064 -NKHSLADKSIADICEALIGASLLSGGRVHRFDTAVKAVTAFVNSENHQVSDWQSYVGLY 1122

Query: 1246 SYVPR--INEIKD--------IESKIGYEFTVKFLLQEAITHASVQEFY----CYQN--- 1288
            S +PR  I E  D        I  ++GY F    LL  A THAS    +    CYQ    
Sbjct: 1123 S-LPRYQIAEADDTQLDLAQQIGDRLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEF 1181

Query: 1289 -----------------------------------------------LYKHLQHCSTLLL 1301
                                                           L++HL + S  LL
Sbjct: 1182 LGDSLLDMVCVEHLYHKYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKALL 1241

Query: 1302 SQITEY--------VKSFPKPG-ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEV 1352
             QIT Y         +S   P   TT S P    PK L D+LE+ +GA+ +D+  + + V
Sbjct: 1242 GQITRYAEEIEATETESIDSPDFWTTTSDP----PKCLPDMLEAYIGAIFVDSNFSFEVV 1297

Query: 1353 WRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDV 1410
               F+                L++  E       F  ++ T  GE+  V A     L  V
Sbjct: 1298 EDFFQQC--------------LKKYFEDMSIYDTFANKHPTASGEVDSVDAAEHRVLAAV 1343

Query: 1411 LL----VGEGQERSRKAAKGKAASQLLKKLE 1437
            ++    V EG   S   AK KA+   L KL+
Sbjct: 1344 IIHDEFVAEGIASSAGYAKVKASENALAKLD 1374


>gi|67525463|ref|XP_660793.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4]
 gi|40743766|gb|EAA62953.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4]
          Length = 1726

 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 161/671 (23%), Positives = 268/671 (39%), Gaps = 127/671 (18%)

Query: 26  SGHDHAV---DGPSSST---NSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMI---- 75
           SG+D      D P +S     S     R YQL++FE + + N I V+ TG+GKT +    
Sbjct: 340 SGYDSLAERSDNPMASIPEERSAEHRARSYQLEMFEASLKGNIIVVMGTGSGKTQMYAAC 399

Query: 76  -AVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWD 134
             +  + D++Q              +P  H                  E      V+ W 
Sbjct: 400 PGLRSLTDVSQR-------------SPAYHT--------------RAGELGWEDKVELWT 432

Query: 135 SQC-WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193
            Q  W   +    V+V TP +L DA+   F               +  G           
Sbjct: 433 EQAVWDAVLEGLQVIVSTPAVLHDAMTHGF--------------EYGPGA---------- 468

Query: 194 YHKSDNKPKVFGMTASP-VVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPS 252
                  P++ G+TAS    R+G+ +    E  ++ + +T  +    + + T M      
Sbjct: 469 ------VPRILGLTASAGSSREGLQT---IEMNLNSVCTTPQAHRQELLEYTHM------ 513

Query: 253 AKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSD 312
                           +L+  L     K +ASL   +GS L    + D+ + +   Q+  
Sbjct: 514 ---------------PELRRVLYTPLMKENASL--WEGSTLQKLLERDNTYCS--GQMKT 554

Query: 313 YHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL 372
           +  K ++   ELG+  A   ++  +E++L        Y  S +   Y   E L  I S  
Sbjct: 555 FVCKAVHIFQELGIWAAEYFIRASVEELL-----SHAYVHSKIDLDYDEREYLVNILSKS 609

Query: 373 PLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432
           P+ D        D        +  +   E L  FL   +      +IFVE+  A  V+  
Sbjct: 610 PVPD-------IDVHSTDPKDFPVSPKFEALISFLMSTEDINFSGLIFVEQRAAVTVMSY 662

Query: 433 FVKKVPFLT-HLTVAYLTGSTTSV-------DALTPKVQKEVLESFRGGKVNLLFATDVI 484
            +   P            G + S        D L+ K+Q + L+ FR G+ NL+ ATDV+
Sbjct: 663 LLSTHPSTRDRFRTGSFIGMSNSTNRKTMLGDLLSAKMQPDTLDDFRYGRKNLIVATDVL 722

Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML---ERGNLKQRNKLFDII 541
           +EG+ V  CS VI +++PK   S+IQ RGRAR+ NS + +ML   + G+   + + F+ I
Sbjct: 723 KEGIDVSACSVVICYNIPKGFESFIQRRGRARRQNSTYSMMLSTEDDGSTLDKWQKFEKI 782

Query: 542 RSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 601
             E  + D    R  E   L +        + V STGA +T + ++  +  +C+ LP   
Sbjct: 783 MEEACLEDR--RRTEELRALGSLDEDVCTRFCVRSTGAILTAEYAMQHLVHFCDTLPRQN 840

Query: 602 YYTPKPIFKYKSAEEA-YECELTLPS--NAPFQTIVGPT-SRNKNLSKQLVCLEACEKLH 657
           Y   KP F ++  +      ++ LPS  N   +   G    + +  +K+     A + L+
Sbjct: 841 YVEDKPEFSFERNDGGLLRAKVILPSSVNPKVRRAEGKAWWKTERAAKKEAAFYAYKALY 900

Query: 658 QVGALNDHLLP 668
           + G +ND+LLP
Sbjct: 901 EHGLVNDNLLP 911



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 117/260 (45%), Gaps = 45/260 (17%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPS-SLILEALTTLGCCESFSMERLELLGD 1085
             +P ++ RLE+ ++A++L E +    R+        ++ A+T          +R E  GD
Sbjct: 1157 FIPVILDRLEAALVATRLCETV---LRDIQFQDLRHVITAITMPLAQAPTDYQRYEFFGD 1213

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV 1145
            SVLK+ V+  LF   P  HEG L+      V N+ L +   D+ L  YI  + F PR+W 
Sbjct: 1214 SVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIISNRFTPRKWS 1273

Query: 1146 APGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALI 1205
            AP                    +  K +   +            R M +K +AD  EALI
Sbjct: 1274 APL-------------------ISEKLYASAST-----------RSMSAKVLADVVEALI 1303

Query: 1206 GAYYVGGGLIAALY-MMKWLGIDADLEVSLVDDCITRA-----SLRSYVPRINEIKDIES 1259
            GA Y+ GGL  A   ++++L      E+ L +  + R      S     P + + +++E+
Sbjct: 1304 GAAYIDGGLHKAQSCIVRFLP-----EIELPETKLPRPESMPMSKDHKKPHLIQQENLEN 1358

Query: 1260 KIGYEFTVKFLLQEAITHAS 1279
             IGY F  K LL EA+TH S
Sbjct: 1359 HIGYTFKDKTLLMEALTHPS 1378


>gi|351713047|gb|EHB15966.1| Putative ATP-dependent RNA helicase DDX58 [Heterocephalus glaber]
          Length = 925

 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 152/587 (25%), Positives = 258/587 (43%), Gaps = 92/587 (15%)

Query: 46  PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           PR YQL++   AK  +NTI    TG GKT +++++ +   Q   S G K  ++F A  V 
Sbjct: 244 PRSYQLELALPAKEGKNTIIYAPTGCGKTFVSLLICEHHLQKF-SQGRKGKVVFFANQVP 302

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           +  QQ  V   + +       G  G    +    Q  I  ND++++TPQILL+ L+   +
Sbjct: 303 VYEQQKTVFSRYFERLGYRVTGISGATAENVPVAQT-IESNDIIILTPQILLNNLKNGTV 361

Query: 165 -SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSS 218
            SL I   ++ DECH+ + +HPY  IM  +  +     SD  P+V G+TAS     GV  
Sbjct: 362 PSLSIFTLMIFDECHNTSKHHPYNMIMFNYLEQKLGGSSDPLPQVIGLTASV----GVGD 417

Query: 219 AMDCEGQIS---ELESTLDSQVFTI--EDKTEME--VFVP---SAKESCRFYDQSKFCGS 268
           A + E  I+   +L ++LD+ V     E+  E+E  V+ P   S K   R  ++ K   S
Sbjct: 418 AKNTEEAIAYICKLCASLDASVIATVKENLEELEQVVYKPQKISRKVKPRTTNRFKLIIS 477

Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDK--------------HKTLRK-QLSDY 313
            L  + E         ++K+   +L    ++ D+              HK  R  QL D 
Sbjct: 478 QLMKETE--------HMAKIISEELGYLFEIQDRVFGTQKYEQWIVEVHKACRVFQLPDK 529

Query: 314 HAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY-FLEEVLHVIGSA- 371
                   +E   IC  +A+ +    + K  +   I   + ++    +L++  + + +A 
Sbjct: 530 --------EEESRIC--KAMYLYTSHLRKYNDTLIISEDAQMKAGLDYLKDFFNNVRAAA 579

Query: 372 ---------------LPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVL 416
                          LP  + + +D   +  K  D       LH +LQ        T+  
Sbjct: 580 FDEIEQDLTRRFEEKLPELENVSMDPSNENPKLKD-------LHLILQEEYHVNPKTRT- 631

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRGGK 474
            I+FV+       +++++++   L  L    LT  G T++   +T   QK VL+SFR   
Sbjct: 632 -ILFVKTRALVDALKKWIEENSALNFLKPGILTGRGRTSNKTGMTLPAQKCVLDSFRANG 690

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNL--K 532
            N+L AT V +EG+ +  C+ VI ++    V   IQSRGR R   S+  L+    ++  K
Sbjct: 691 DNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQSRGRGRAKGSKCYLLSSNADVIEK 750

Query: 533 QRNKLFDIIRSERSVTD--TALSRDPEACFLKACTYVKTKSYIVEST 577
           +   L+     E+ + D  + L    EA F K   +++ +   +  +
Sbjct: 751 ENTNLY----KEKMMNDSISILQTWDEATFQKRIHHIQGQEKFIRDS 793


>gi|310794641|gb|EFQ30102.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
          Length = 1447

 Score =  122 bits (306), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/195 (36%), Positives = 112/195 (57%), Gaps = 16/195 (8%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ ++F+ + R+N I  ++TG+GKT +AV+ I+     ++    K ++ FLAPTV L 
Sbjct: 66  RAYQTEMFDQSMRQNIIVAMDTGSGKTQVAVLRIR---AEVERTSSKHIVWFLAPTVSLC 122

Query: 107 HQQYDVIRVHT-DFEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            QQ+ V++    + +++   G   VD W D + W + ++   ++V T QILLDAL  AF+
Sbjct: 123 AQQFAVLQSQIPEVQIKFLSGDDNVDSWSDQRTWDEVLHNVRIVVSTYQILLDALSHAFV 182

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVSSAM 220
            ++ +  IV DE H+  G  P +KIM  FYH+   K    P + G+TASP     V    
Sbjct: 183 RMERLSLIVFDEAHNCIGKSPGSKIMTVFYHEEKGKGRYTPHILGLTASPTFGSKV---- 238

Query: 221 DCEGQISELESTLDS 235
             EG I+ LE+TLD+
Sbjct: 239 --EG-INALEATLDA 250



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 139/309 (44%), Gaps = 60/309 (19%)

Query: 997  NTKKPQMHVHMPPELLVRVD-VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNF 1055
            ++ KP   V+  P    +VD +P    +   L+PS++  +E+ ++A +L   +    R  
Sbjct: 913  SSSKPYSRVY--PMPWAKVDTIPAKYAQFGVLIPSILHHIETRLVARELSLGL---LRPL 967

Query: 1056 HIPS-SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSW 1114
             I   SLIL A++T    E  + ER+E LGDS+LK++ + ++    P+  E  LS  +  
Sbjct: 968  AISDLSLILTAISTGSASEPTNYERIEFLGDSILKFSATINVAALNPQWPERLLSFHKDA 1027

Query: 1115 AVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFT 1174
             V NSTL K      L  YI    F  ++W        RP+  +                
Sbjct: 1028 IVSNSTLCKAAVKHGLDRYILTKPFTGQKW--------RPIYVDS--------------- 1064

Query: 1175 QDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMM-------KWLGID 1227
                 V+ +  D   R M +KT+AD  EALIGA  + GGL  AL  M        W  +D
Sbjct: 1065 -----VLSRGEDKSMRKMSTKTLADIVEALIGASMIDGGLDKALKCMSIFLQQINWRTLD 1119

Query: 1228 ADLEVSLVDDCITRASLRSYVPRINE----IKDIESKIGYEFTVKFLLQEAITHASV--- 1280
            A         C  R +L ++ P   E    ++ +E  IGY+F  K LL +A+THAS    
Sbjct: 1120 A---------C--RLALYNFSPPDVELPSTLEPLEHLIGYKFDRKTLLIQAMTHASFNLG 1168

Query: 1281 QEFYCYQNL 1289
              F C + L
Sbjct: 1169 NPFGCLERL 1177



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 14/212 (6%)

Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
           L  FR GK NLL AT V+EEG+ VP C+ VI FD P  + S+IQ RGRAR  +S+ +++ 
Sbjct: 487 LHQFRNGKTNLLIATSVLEEGIDVPACNVVICFDYPPNLKSFIQRRGRARMKDSKLLMLH 546

Query: 527 ERGNL--KQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTD 584
           +      K+   L   ++S+    +  L    E    +  T +    +++  TGA +  +
Sbjct: 547 DSSESAPKEWAALEAEMKSQYEEKERELEHLKEVEDTEESTEM---IFVINQTGAVLDPE 603

Query: 585 SSVNLIHRYCEMLPSDKY--YTPKPIFKYKSAEEAYECELT--LPSNAPFQTIVGPTS-- 638
           ++   +   C +L   ++  + P  I K   A +A +   T  LPS  P       +   
Sbjct: 604 NAKQHLDHLCRILSPGEFIDWRPDYIIKKLGAVDAPDIRATVVLPSYLPSHVRTAESQMA 663

Query: 639 --RNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
               KN +K     +A   L++ G +ND+LLP
Sbjct: 664 WKSEKNATKD-AAFQAYVGLYKAGLVNDNLLP 694


>gi|388857965|emb|CCF48410.1| related to cell cycle control protein dicer [Ustilago hordei]
          Length = 1752

 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 120/232 (51%), Gaps = 34/232 (14%)

Query: 39  TNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ---------AIKS 89
           ++ +  +PR YQL++ E+AK  N +  L+TG+GKT+I+V+L++ + Q            S
Sbjct: 75  SDQLATVPRSYQLELAELAKAGNVLVCLDTGSGKTLISVLLLQYVHQHSSPPPTPSLAPS 134

Query: 90  NGF---------KKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYG-----------AKG 129
           +G          +K+  FL   V LVHQQ  VI  ++   V + YG              
Sbjct: 135 SGAQPFSSPAPQRKVAFFLVNLVPLVHQQSSVIAGNSRLSVGKLYGELKDSLRSKSSQLA 194

Query: 130 VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189
           VD+W S  W   +  + V+V T Q  LDAL   F+ +  +  ++ DE HHA  NHP+ +I
Sbjct: 195 VDDWRSPQWSALLASHQVIVSTAQCFLDALIHGFIKMSDLNLLIFDEVHHALKNHPFFRI 254

Query: 190 MKEF-YHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI 240
           MK +   K + +PK+FGMTASP+     S   D   Q   L+  +D+++ T+
Sbjct: 255 MKYYRLAKEEERPKIFGMTASPIFTG--SGRFDEASQY--LQRAMDARIHTV 302



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 142/314 (45%), Gaps = 48/314 (15%)

Query: 396 STKLHELLQLFLSFGKSTQVLC-IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG-STT 453
           S KL  L++L   F  S    C IIFVER   A ++   VK++P L  +   +L G    
Sbjct: 510 SPKLLRLIELLHCFEPSKSSFCGIIFVERRQTATLLVELVKRIPGLEFIHPEFLLGHDNG 569

Query: 454 SVDALTPKV----QKEVLESFRGGK-VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
           + +   P +    Q +VL  FR  K  NLL AT + EEG+ +   + VIRFDL     S+
Sbjct: 570 AANGGAPGMDWHDQVQVLNRFRRRKPTNLLIATSIAEEGLDIQAANLVIRFDLFNRHISF 629

Query: 509 IQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSE------------------------ 544
           +QSRGRAR   S+FILM E+GN +    + +  ++E                        
Sbjct: 630 LQSRGRARAKESRFILMAEKGNQEHAGTILNAFKTEANRAKWLDGIAEPHLAMPDWGEDW 689

Query: 545 ----RSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSD 600
               R  TD+      E    + C +  T       TGA +  + +  L+  Y   L S+
Sbjct: 690 QQKLRIDTDSQEGVGVEGGEEEKCMFEPT-------TGARLFPEDAPTLVSHYAASLHSE 742

Query: 601 KYYTPKPIFKYKSAE----EAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKL 656
             Y    +  Y+  +     +Y+  L LPS A  +++     R+K  +K++    AC++L
Sbjct: 743 --YLKDAVLAYRIEKVDGLPSYKAVLELPSTAAVRSVESDGCRSKKAAKRMAAFRACQQL 800

Query: 657 HQVGALNDHLLPSV 670
             +G L++ L+P +
Sbjct: 801 RALGELDEWLMPKL 814



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 86/193 (44%), Gaps = 27/193 (13%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P ++++S+ LLPS+  R + L+LA    +  N       + +  +LEALT+     +F 
Sbjct: 1126 LPSTLLRSILLLPSIFTRYDQLLLA----QACNNDLLEGRLDNDKVLEALTSPSAGSAFD 1181

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGY--I 1134
             ERLE LGD+ LK   +CH F T+  + E +L       V N  L K      L+ Y  +
Sbjct: 1182 YERLEFLGDTFLKLIATCHTFTTHLGRTEAELHMANKGIVTNVRLLKEAKRLGLEKYAIL 1241

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
                  PRR+ A       PV C  G      P        D +V V K           
Sbjct: 1242 PSCNLLPRRFTA-------PVICNVGGALTNDP----SMDHDGQVDVVK----------E 1280

Query: 1195 KTIADCAEALIGA 1207
            KT++D  E+LIGA
Sbjct: 1281 KTLSDIVESLIGA 1293


>gi|307169911|gb|EFN62420.1| Endoribonuclease Dcr-1 [Camponotus floridanus]
          Length = 506

 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 135/272 (49%), Gaps = 43/272 (15%)

Query: 1056 HIPSSL-ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSW 1114
            H P+++ I+ ALTT    + F +ERLE LGDS LK+  S  L+  +P  +EGQL+A +  
Sbjct: 23   HGPNAVEIMHALTTKLGNDMFDLERLETLGDSYLKFITSLFLYHKFPAFNEGQLTALKGK 82

Query: 1115 AVCNSTLHKLGTDRKLQGYIRDSAFDP-RRWVAPGQLSLRPVP--------CECGVDTLE 1165
             + N  L+  G  + + G I++ AF P   ++AP    LRP+             +  L 
Sbjct: 83   IIGNRNLYYCGNKKNIPGRIKNDAFIPTSNFIAPAYTVLRPLQKILLDESVAPNVLYELR 142

Query: 1166 VPLDGKF---FTQDTKVVV--------------GKPCDMGHRWMGSKTIADCAEALIGAY 1208
            +P + KF    ++DTK+ +              G    +G + +  KTIAD  EALIG Y
Sbjct: 143  IPEEEKFTGYISEDTKMTMQQIVMNWDKEDTKTGYEHYLGVQILSDKTIADSVEALIGVY 202

Query: 1209 YVGGGLIAALYMMKWLGIDADLEVSLV------DDCITRASLRSYVPRINEIKDIESKIG 1262
                G+  A  ++KW GI  ++++  +      D  I   +  SY+P  N   D+E+KIG
Sbjct: 203  LKSNGIKGAAKLLKWFGILPNIQIDELLYSNPPDPLINPGNPNSYMPWAN---DMETKIG 259

Query: 1263 YEFTVKFLLQEAITHAS-----VQEFYCYQNL 1289
            Y+F  +  L +A TH S     + E  CYQ L
Sbjct: 260  YKFNNRAFLLQAFTHPSYTPNVITE--CYQRL 289



 Score = 40.8 bits (94), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRI 1355
            +  PK LGDL ES++GA+ +D+  NL +VW I
Sbjct: 388  VDVPKVLGDLFESLIGAIYLDSGKNLTKVWEI 419


>gi|353252003|pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
 gi|353252004|pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
          Length = 936

 Score =  120 bits (302), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 133/521 (25%), Positives = 240/521 (46%), Gaps = 45/521 (8%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ+++ + A   +N +    TG+GKT +++++ +   Q + + G K  ++FLA  V +
Sbjct: 250 RSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPV 308

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGV--DEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
             QQ +V + H  FE  + Y  +G+  + + +   +K I  +D++V+TPQIL+++     
Sbjct: 309 YEQQKNVFKHH--FE-RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT 365

Query: 164 L-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVSS 218
           L SL I   ++ DECH+ TGNHPY  +M  +  +  N     P++ G+TAS     GV +
Sbjct: 366 LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASV----GVGN 421

Query: 219 AMDCEGQISE---LESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQ---SKFCG--S 268
           A + E  I     L S LD Q  +   E+  E++ F+   +   R   +   + F    S
Sbjct: 422 AKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481

Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD--ELGL 326
           +L  + E        +++ +     N  KD   ++      ++    ++L   D  E   
Sbjct: 482 NLMSETEA----LMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESR 537

Query: 327 ICAYEAVKICLEKVLKAQEECEIYRQSSL--QCKYFLEEVLHVI-GSALPLADKIFLDFG 383
           IC   A+ IC E + K  +   I   + +     Y  E   +V  G    L   +   F 
Sbjct: 538 IC--RALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQ 595

Query: 384 FDYSKAVDLGYIST----KLHELLQLF-LSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438
               + + L    T    KL EL+ +   ++  + Q   ++F +       +++ +++ P
Sbjct: 596 EKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENP 655

Query: 439 FLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRGGKVN-LLFATDVIEEGMHVPNCSY 495
            L ++    L   G       +T   QK VL++F+  K N LL AT V +EG+ +  C+ 
Sbjct: 656 ILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNL 715

Query: 496 VIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           V+ ++    V+  IQ RGR R   S+ IL+  +  + +  K
Sbjct: 716 VVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEK 756


>gi|305354766|emb|CBL30926.1| Dicer protein [Echinococcus multilocularis]
          Length = 1981

 Score =  120 bits (302), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 121/239 (50%), Gaps = 30/239 (12%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            ++IL++LT LG  +  +MERLE +GDS LK+AV+  LFL YP+ HEG LS+ RS  V NS
Sbjct: 1504 TMILQSLTLLGAGDFINMERLETIGDSFLKFAVTMDLFLRYPEAHEGHLSSLRSQIVGNS 1563

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTK 1178
             L++LG ++ L G I   AF+P   W+ P           C V T     D       T+
Sbjct: 1564 NLYRLGCEKNLPGRIVGMAFEPHENWLPP-----------CYVCT----TDSTNNIASTR 1608

Query: 1179 VVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDC 1238
            +    P  + H+++ +K++ADC E+L+G Y    G  +AL +++W GI+       +   
Sbjct: 1609 IKNQCP-SLTHQFLTNKSVADCVESLVGCYLTERGERSALKLLQWFGIECLPPAGEMQPA 1667

Query: 1239 ITRASLRSYVP-------------RINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY 1284
             +   L    P             R      +E  IGY F  + LL EA TH++ ++ +
Sbjct: 1668 GSPWKLAEEKPLSKVEEATVERVYRAGRFSKLEEIIGYTFKNRRLLIEAFTHSTCRDLH 1726



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 10/117 (8%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDK--LELPPLRELIELC 1381
            ++ PKALGD+ ES+ GAV +D+ L L+ +WR+F P+L   +      +   P+R L+ELC
Sbjct: 1863 VEVPKALGDVFESLAGAVFLDSGLCLNTLWRVFFPLLRERIERYSTCVAKSPVRRLLELC 1922

Query: 1382 DSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGE--GQERSRKAAKGKAASQLLKKL 1436
                 F +      G+M     R+ ++ V  +G   G  R+ + AK  AA    +++
Sbjct: 1923 PERVKFERPMVRPDGKM-----RVVVR-VAGIGRYVGVGRTYRLAKSAAADLAYRRV 1973



 Score = 49.7 bits (117), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 13/138 (9%)

Query: 921  YSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVL--IHPGQPLL-------RLKQ 971
            Y +V + N+ S  + F         TF +Y++ KYG+ L      QPLL       RL  
Sbjct: 1225 YYVVAVRNDLSPATEFPS---PQYATFADYYACKYGLRLSGAPSDQPLLDAAYAPLRLAP 1281

Query: 972  SHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHM-PPELLVRVDVPISVVKSLYLLPS 1030
               P   +       G   G+ +  +      H+ +  PE   R  +P +V +    LPS
Sbjct: 1282 LLVPRGCVAQRKANNGVASGNATSTSKHAIPRHIQLLVPEFCHRHAMPATVWQKAICLPS 1341

Query: 1031 VMQRLESLMLASQLREEI 1048
            ++ RL+ L+LA +LR EI
Sbjct: 1342 ILYRLQHLLLAEELRSEI 1359


>gi|356460981|ref|NP_998969.2| probable ATP-dependent RNA helicase DDX58 [Sus scrofa]
 gi|224176124|dbj|BAH23574.1| DEAD box polypeptide 58 [Sus scrofa]
          Length = 943

 Score =  120 bits (302), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 143/540 (26%), Positives = 247/540 (45%), Gaps = 72/540 (13%)

Query: 46  PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           PR YQL++   A+  +NTI    TG GKT +++++ +   +     G K  ++F A  + 
Sbjct: 242 PRNYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKF-PQGRKGKVVFFAIQLP 300

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           +  QQ  V   H +    +  G  G    D+ C ++ +  +D++++TPQIL++ L    +
Sbjct: 301 VYEQQKSVFSKHFERLGYKVAGISGATS-DTVCVEQIVENSDIIILTPQILVNCLTNGTI 359

Query: 165 -SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSS 218
            SL +   ++ DECH+ +  HPY  IM  +  +     SD+ P+V G+TAS  V    + 
Sbjct: 360 PSLSVFTLMIFDECHNTSKQHPYNVIMFSYLDRKLGGSSDSLPQVIGLTASVGVGDAKNK 419

Query: 219 AMDCEGQISELESTLDSQVF-TIEDK-TEME--VFVPSA---KESCRFYDQSKFCGSDLK 271
           A   E  I +L ++LD+ V  T+ D   E+E  V+ P     K   R  D+ K   S L 
Sbjct: 420 AEATE-YICKLCASLDTSVIATVRDNLEELEEVVYKPQKFFRKVELRTTDRFKCIISQLM 478

Query: 272 GKLE-VSWSKFD-------ASLSKLQGSQLNCYK---------------DMDDKHKTLR- 307
            ++E ++ S F+         L ++Q S     K                M DK K  R 
Sbjct: 479 MEIESLAKSIFEELGTITLGGLFQIQNSNFGTQKYEQWIVKVQKECAVFQMPDKDKESRI 538

Query: 308 -KQLSDYHAKILYCLDELGLICAYEAVKICLE------KVLKAQEECEIYRQSSLQCKYF 360
            K L  Y + +    D L +I  +  +K  L+      + ++A    EI +  + + +  
Sbjct: 539 CKALFSYMSHLRIYNDAL-IINEHARMKDALDYLKDFFRNIRAAGFDEIEQDLTQRFEEK 597

Query: 361 LEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIF 420
           L+E+           + I +D   +  K  DL +I  + + L         + +   I+F
Sbjct: 598 LQEL-----------ESISIDPSNENPKLRDLCFILQEEYHL---------NPETRTILF 637

Query: 421 VERIIAAKVVERFVKKVPFLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRGGKVN-L 477
           V+       +++++K+ P L+ L  + LT  G T     +T   QK VL++FR  K N +
Sbjct: 638 VKTRALVDALKKWIKENPKLSFLKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKI 697

Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           L  T V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+    +L  + K+
Sbjct: 698 LITTSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTANADLIDKEKM 757


>gi|126326479|ref|XP_001374256.1| PREDICTED: interferon-induced helicase C domain-containing protein
           1 [Monodelphis domestica]
          Length = 1023

 Score =  120 bits (302), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 148/564 (26%), Positives = 242/564 (42%), Gaps = 80/564 (14%)

Query: 24  GSSGHDHAVDGPSSSTN-SINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIK 81
           G+ G D   D      +     + R YQ++V E A + +N I ++ TG+GKT +AV + K
Sbjct: 291 GTMGSDSDQDDEKKRASPEPELVLRSYQMEVAEPALEGKNIIIIIPTGSGKTRVAVYIAK 350

Query: 82  DIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CW 138
           D     K       ++ L   V LV Q    +R   +  +++ Y   GV   DSQ    +
Sbjct: 351 DHLDKKKKASEPGKVMVLVNKVPLVDQH---LRKEFNPFLKKCYRVIGVS-GDSQLKISF 406

Query: 139 QKEINKNDVLVMTPQILLDALRKAF------LSLDIVCFIVIDECHHATGNHPYTKIMKE 192
            + +   DV++ T QIL ++L  +       + L     I+IDECHH      Y  IM+ 
Sbjct: 407 PEVVRSYDVIISTAQILENSLLDSENGDDDGVQLSDFSLIIIDECHHTNKEAVYNTIMRR 466

Query: 193 FYH--------KSDNKP-----KVFGMTASPVVRKGVSSAMDCEGQISELESTLD-SQVF 238
           +          K  NKP     ++ G+TASP V  G +     E  I +L + LD S + 
Sbjct: 467 YVKQKMKNCRLKKANKPVVPQPQILGLTASPGV-GGATKQAKAEDHILQLCANLDASMIV 525

Query: 239 TIEDKTEMEVFVPSAKESCRFY--------------------DQSKFCGSDLKGKLEV-S 277
           T+  K          KE C+ +                    +   FC  +    L   S
Sbjct: 526 TV--KENASFLKEQVKEPCKKFVIAADNRENPFKKKLVEIMTNIQNFCQMNPTSDLGTQS 583

Query: 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL 337
           + +F     K    + NC + +  +H  LRK     + + L   D + ++ AY+     L
Sbjct: 584 YEQFVIQKEKRAAKEGNCKERVCAEH--LRK-----YNEALQINDTIRMLDAYQH----L 632

Query: 338 EKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK-----AVDL 392
           E     ++E ++  Q   Q     E+        +   D   LD  ++  K     A+  
Sbjct: 633 ESFYNDEKEKKMATQEYDQ----EEDDNEKKALKVDETDTFLLDLFYENKKELKKLAMTP 688

Query: 393 GYISTKLHELLQLFLS-FGKSTQVLC--IIFVERIIAAKVVERFVKKVPFLTHLTVA--Y 447
            Y + KL +L    +  F K+   +   IIF +   +A  + +++  +     + V   +
Sbjct: 689 DYENEKLTKLRNTIMEEFTKTDGSVARGIIFTKTRQSAYSLSQWINSIEKFAEVGVKAHH 748

Query: 448 LTGSTTSVD--ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTV 505
           L G+  S +  A+T   QKEV+ +FR GK+NLL AT V EEG+ +  C+ VIR+ L    
Sbjct: 749 LIGAGNSSEFKAMTQNEQKEVINNFRTGKINLLIATTVAEEGLDIKECNIVIRYSLVTNE 808

Query: 506 SSYIQSRGRARQHNSQFILMLERG 529
            + +Q+RGRAR   S ++L+   G
Sbjct: 809 IAMLQARGRARADESTYVLVASDG 832


>gi|75050051|sp|Q9GLV6.1|DDX58_PIG RecName: Full=Probable ATP-dependent RNA helicase DDX58; AltName:
           Full=DEAD box protein 58; AltName: Full=RHIV-1; AltName:
           Full=RIG-I-like receptor 1; Short=RLR-1; AltName:
           Full=RNA helicase induced by virus; AltName:
           Full=Retinoic acid-inducible gene 1 protein;
           Short=RIG-1; AltName: Full=Retinoic acid-inducible gene
           I protein; Short=RIG-I
 gi|9957597|gb|AAG09428.1|AF181119_1 RNA helicase [Sus scrofa]
          Length = 940

 Score =  120 bits (301), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 143/540 (26%), Positives = 247/540 (45%), Gaps = 72/540 (13%)

Query: 46  PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           PR YQL++   A+  +NTI    TG GKT +++++ +   +     G K  ++F A  + 
Sbjct: 241 PRKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKF-PRGRKGKVVFFAIQLP 299

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           +  QQ  V   H +    +  G  G    D+ C ++ +  +D++++TPQIL++ L    +
Sbjct: 300 VYEQQKSVFSKHFERLGYKVAGISGATS-DTVCVEQIVENSDIIILTPQILVNCLTNGTI 358

Query: 165 -SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSS 218
            SL +   ++ DECH+ +  HPY  IM  +  +     SD+ P+V G+TAS  V    + 
Sbjct: 359 PSLSVFTLMIFDECHNTSKQHPYNVIMFSYLDRKLGGSSDSLPQVIGLTASVGVGDAKNK 418

Query: 219 AMDCEGQISELESTLDSQVF-TIEDK-TEME--VFVPSA---KESCRFYDQSKFCGSDLK 271
           A   E  I +L ++LD+ V  T+ D   E+E  V+ P     K   R  D+ K   S L 
Sbjct: 419 AEATE-YICKLCASLDTSVIATVRDNLEELEEVVYKPQKFFRKVELRTTDRFKCIISQLM 477

Query: 272 GKLE-VSWSKFD-------ASLSKLQGSQLNCYK---------------DMDDKHKTLR- 307
            ++E ++ S F+         L ++Q S     K                M DK K  R 
Sbjct: 478 MEIESLAKSIFEELGTITLGGLFQIQNSNFGTQKYEQWIVKVQKECAVFQMPDKDKESRI 537

Query: 308 -KQLSDYHAKILYCLDELGLICAYEAVKICLE------KVLKAQEECEIYRQSSLQCKYF 360
            K L  Y + +    D L +I  +  +K  L+      + ++A    EI +  + + +  
Sbjct: 538 CKALFSYMSHLRIYNDAL-IINEHARMKDALDYLKDFFRNIRAAGFDEIEQDLTQRFEEK 596

Query: 361 LEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIF 420
           L+E+           + I +D   +  K  DL +I  + + L         + +   I+F
Sbjct: 597 LQEL-----------ESISIDPSNENPKLRDLCFILQEEYHL---------NPETRTILF 636

Query: 421 VERIIAAKVVERFVKKVPFLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRGGKVN-L 477
           V+       +++++K+ P L+ L  + LT  G T     +T   QK VL++FR  K N +
Sbjct: 637 VKTRALVDALKKWIKENPKLSFLKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKI 696

Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           L  T V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+    +L  + K+
Sbjct: 697 LITTSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTANADLIDKEKM 756


>gi|392593064|gb|EIW82390.1| ribonuclease III [Coniophora puteana RWD-64-598 SS2]
          Length = 1217

 Score =  120 bits (301), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 155/347 (44%), Gaps = 40/347 (11%)

Query: 964  QPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVK 1023
            QPL+++ +  N  NLL         GK +             ++ PEL  +  +P +V +
Sbjct: 640  QPLIQVSKVPNLSNLLNPLKTAAEVGKPTAR-----------YLIPELTAKYTIPANVYR 688

Query: 1024 SLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELL 1083
               LLPSV QR++++++A    +E+N       I   L+L AL+      +F  ERLELL
Sbjct: 689  MALLLPSVTQRIDNILIA----KELNAMLFEHQITEGLLLSALSAPSALYAFDYERLELL 744

Query: 1084 GDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRR 1143
            GD+ LKY  S ++F+ YP   EG L   R     N  L +     +L  YI+      + 
Sbjct: 745  GDAFLKYITSIYVFVIYPAHAEGSLHNLRQKMTSNKALLQNALAIELPPYIQGKPLSLKL 804

Query: 1144 WVAPGQLSLRPVP----------CECGVDTLEV---PLDGKFFTQDTKVVVGKPCDMGHR 1190
            W+ P   +L   P              VDT  V   P       +  K V  +  D   +
Sbjct: 805  WL-PTNYTLDKCPPIAHQRHDEHAASAVDTTVVDTRPHPDTTQARTKKKVRKQNQDQVTQ 863

Query: 1191 WMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPR 1250
            W+G KTIAD  EA+IGA Y+ GG   AL +MK L I  +      D    R  L +  PR
Sbjct: 864  WLGDKTIADVVEAIIGAAYLSGGCDVALRVMKALTIPLNSVEQWSD--FGRKVL-TPPPR 920

Query: 1251 IN------EIKDIESKIGYEFTVKFLLQEAITHASVQEF--YCYQNL 1289
            ++       ++ +E  +  +     LL +A+TH S+Q +    YQ L
Sbjct: 921  VSAALPPRSLEFVEKLVRRKVKYPHLLAQALTHGSIQGYDATTYQRL 967



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 108/242 (44%), Gaps = 25/242 (10%)

Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
           P++++ VL+ F   K N+L  +  IE+ + VP    +IRF++ ++  SY  SR + R   
Sbjct: 174 PELERSVLDGFHSRKYNVLIVSQSIED-LSVPKVDVIIRFNVIESQVSYAYSRAQCRGFL 232

Query: 520 SQFILMLERGNLKQRNKLFDIIRSERS---------------VTDTALSRDPEACFLKAC 564
           SQ + M+E+GN  QR  L  +    R                   + L   P+  +L   
Sbjct: 233 SQLVHMIEKGNDAQRRTLSRVSECARQDGRWIDFLVRNGKCCAPSSLLYESPQDHYLHEE 292

Query: 565 TY---VKTKSYIVESTGAS-VTTDSSVNLIHRYCEMLPSDKYYTP-KPIFKYKSAEE--- 616
            +        Y+++ T A  +  + +V  I+R    L    +  P +P+   +S  +   
Sbjct: 293 AFPLLCADGRYLIDPTTAGHLHVNDAVVAIYRLASNLQRMMHTAPDEPLLLLESERKDGA 352

Query: 617 -AYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSE 675
             ++C + LP   P     GP +     +++L C  ACE+LH++GAL   L       S+
Sbjct: 353 CLFQCTVNLPGLLPNVKYSGPYALTSMKARRLACYGACEQLHEIGALPHALFSYNRSFSQ 412

Query: 676 NN 677
           N+
Sbjct: 413 ND 414


>gi|405960420|gb|EKC26346.1| Endoribonuclease Dicer [Crassostrea gigas]
          Length = 1759

 Score =  120 bits (300), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 148/278 (53%), Gaps = 25/278 (8%)

Query: 412 STQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPK----V 462
           S + LC I+FVE    A  + +F+++V      L  +   +LTG     D  + K     
Sbjct: 462 SEKYLCGIVFVEHRYVALAINKFLEEVCSWDENLCFVKSQHLTGQGLK-DGKSKKGNWKK 520

Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
           Q++VL  FR   +NLL +T V+E+G+ VP C+ +++FD P++  SY QS+GRAR  +S++
Sbjct: 521 QEDVLRKFRLQDLNLLVSTTVLEDGIDVPKCNLIVKFDPPRSYKSYSQSKGRARARDSEY 580

Query: 523 ILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIV-------E 575
           ++++E    +   + +++    + + D  + R  E    +   + +  S ++       +
Sbjct: 581 LILVEENKKEMFMQDYNVF---KGIEDVLVDRRNEEEDEEEDNHCEDTSKVLLPYMPSSD 637

Query: 576 STGASVTTDSSVNLIHRYCEMLPSDKY--YTPKPIFKYKSAE--EAYECELTLPSNAPF- 630
           +    VT ++++  ++RYC  LPSD +   TPK   +  S E    Y   L LP N+P+ 
Sbjct: 638 NPHICVTVETAIAFVNRYCAKLPSDAFTHLTPKCTLQEISGEGGTMYRATLNLPINSPYK 697

Query: 631 QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
           +++ G     KNL+K+ V L+ C+ LH+ G L+D L P
Sbjct: 698 RSVQGEVMPTKNLAKRAVALKLCQCLHEAGELDDQLNP 735



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 21/233 (9%)

Query: 50  QLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN---GFKKLIIFLAPTVHLV 106
           Q+++ + A +RNTI  L T  G T I+VML+K+ +  ++     G K+ ++ L  +   +
Sbjct: 35  QVELLDAALQRNTIVCLGTSGGNTFISVMLLKEFSTELRKQLQCGGKRSVVCLN-SDESI 93

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            +   VI+ H+D  V   Y        D       +N + +LV  P +  D L K FL  
Sbjct: 94  QEISQVIKHHSDLNVMPVYELSE----DESKLNSMLNDHQILVTKPSVFNDILLKKFLLP 149

Query: 167 DIVCFIVIDECHHATG-NHPYTKIMKEFYH--KSDNKPKVFGMTASPVVRKGVSSAMDCE 223
             +  ++++ CH      HPY  I+   ++  + +   ++ G+T+S + +K       C+
Sbjct: 150 VQINLVILENCHLILHEEHPYQSIINIIHNSVRKEAAARILGLTSSFISQK-------CQ 202

Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKL 274
               ELE  + S    +  + E    V + +   R  +  KFC +  D+ G L
Sbjct: 203 DP-GELEHIIRSLENHLSARAETATLVIAERYGIRPKEYLKFCDNYEDVTGTL 254



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKALGD+ ES+ GA+ +D+K++LD VWR++  I+ P +    L +P  P+REL+E+    
Sbjct: 1643 PKALGDIFESLAGAIYLDSKMSLDTVWRVYYRIMKPQIDKYLLSIPKSPVRELLEMEPET 1702

Query: 1385 GYFVKENCTLKGEM 1398
              F K   TL+G++
Sbjct: 1703 AKFEKPERTLEGKI 1716



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 52/114 (45%), Gaps = 19/114 (16%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDA--DLEVSLVDDC------ITRASLRS 1246
            K+IADC E+LIG Y    G  AAL  M WLG+      +  +V D          + L  
Sbjct: 1431 KSIADCVESLIGCYLTSCGKKAALKFMHWLGLKVLPQKKKGMVQDTELLSLQCPDSPLLV 1490

Query: 1247 YVPRINEI--------KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNL 1289
            +VP  N I          +E KIGYEF  K  L +A THAS        CYQ L
Sbjct: 1491 HVPDHNSILHRLLEGYDTLEQKIGYEFRDKSYLLQAFTHASYHYNTVTDCYQRL 1544



 Score = 45.4 bits (106), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 7/133 (5%)

Query: 921  YSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV 980
            + + EI ++ +  SPF   + +  KTF  Y++ KYG+ + +  QPLL +  +    NLL 
Sbjct: 969  FYVAEIRSDLNPSSPFP--SPELYKTFSAYYTTKYGLTITNLEQPLLDVDHTSARLNLLT 1026

Query: 981  -NFNDGGGSGKGSKSGMNTKKPQMHVH----MPPELLVRVDVPISVVKSLYLLPSVMQRL 1035
              + +  G    + S    K  + ++     + PEL      P S+ +    LP+++ RL
Sbjct: 1027 PRYMNQKGVALPTSSAETKKARRENLQQKQILVPELCEIHVFPASLWRKAVCLPTILYRL 1086

Query: 1036 ESLMLASQLREEI 1048
              L++A ++R  I
Sbjct: 1087 NYLLVADEIRMRI 1099


>gi|327283103|ref|XP_003226281.1| PREDICTED: interferon-induced helicase C domain-containing protein
           1-like [Anolis carolinensis]
          Length = 1006

 Score =  120 bits (300), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 148/547 (27%), Positives = 230/547 (42%), Gaps = 96/547 (17%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ++V + A + +N +  L TG+GKT +AV + KD     K  G +  +I L   V L
Sbjct: 302 RDYQMEVAQPALEGKNILLCLPTGSGKTRVAVYIAKDHLDKKKDAGEEGKVIVLVNKVPL 361

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ--CWQKEINKNDVLVMTPQILLDALRKA- 162
           V Q +   R      ++  Y   G+         + K +  N V++ T QIL +AL+ A 
Sbjct: 362 VEQHF---RKEFHPYLKHSYKVIGLSGMTQLKISFPKVVKDNHVIICTAQILENALQNAE 418

Query: 163 -----FLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HKSDN------------KPKVF 204
                 + L +   I+IDECHH      Y  IM+ +   K  N            +P++ 
Sbjct: 419 QDEEEGVQLSVFSLIIIDECHHTQKEAVYNNIMRRYLKQKMQNEKRRKMGKPLVPQPQIL 478

Query: 205 GMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI----------------------ED 242
           G+TASP V  G  +    E  I ++ + LD+   T                       +D
Sbjct: 479 GLTASPGV-GGAKNHSKAEEHILKICANLDAYGITTVRTNDLGLNSQVKEPRKKIDIADD 537

Query: 243 KT------EMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCY 296
           KT      E+   +   +  C+F   ++F GS    +  V   K  A             
Sbjct: 538 KTKDPFREELVNIMMKIQGYCQFNPNAEF-GSQTYEQWVVQEEKKAA------------- 583

Query: 297 KDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQS-SL 355
           K+ + KH    + L  Y+  +L   D + +I AY  +K               Y++  S 
Sbjct: 584 KEENRKHHICAEHLKKYNDALLIN-DTIRMIDAYNHLK-------------NFYKEEKSK 629

Query: 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK-------AVDLGYISTKLHELLQ-LFL 407
           +     EE      ++ P    IFL   F Y K       A    Y + KL  L + L  
Sbjct: 630 KMAVNEEEDEEEAVASKPDETDIFLMDLF-YGKKDMLQKLATVAKYENEKLKLLRETLMT 688

Query: 408 SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YLTGS--TTSVDALTPKVQ 463
            F K  +   IIF +   +A  +  ++K+ P      V   YL G+   +    +T   Q
Sbjct: 689 EFTKKPEARGIIFTKTRQSAFALYEWIKENPKFEEAGVKAHYLIGAGHNSEFKPMTQNEQ 748

Query: 464 KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
           K+V+E FR GK+NLL AT V EEG+ +P C+ VIR+ L     + +Q+RGRAR   S ++
Sbjct: 749 KDVIEKFRIGKINLLIATTVAEEGLDIPECNIVIRYGLVTNEIAMVQARGRARADESTYV 808

Query: 524 LMLERGN 530
           L+   G+
Sbjct: 809 LVASGGS 815


>gi|217069801|gb|ACA61272.1| retinoic acid inducible protein I [Anas platyrhynchos]
 gi|388897634|gb|AFK82315.1| retinoic acid inducible protein I [Anas platyrhynchos]
          Length = 933

 Score =  120 bits (300), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 133/521 (25%), Positives = 239/521 (45%), Gaps = 45/521 (8%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ+++ + A   +N +    TG+GKT +++++ +   Q + + G K  ++FLA  V +
Sbjct: 247 RSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPV 305

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGV--DEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
             QQ +V + H  FE  + Y  +G+  + + +   +K I  +D++V+TPQIL+++     
Sbjct: 306 YEQQKNVFKHH--FE-RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT 362

Query: 164 L-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVSS 218
           L SL I   ++ DECH+ TGNHPY  +M  +  +  N     P++ G+TAS     GV +
Sbjct: 363 LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASV----GVGN 418

Query: 219 AMDCEGQISE---LESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQ---SKFCG--S 268
           A + E  I     L S LD Q  +   E+  E++ F+   +   R   +   + F    S
Sbjct: 419 AKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 478

Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD--ELGL 326
           +L  + E        ++  +     N  KD   ++      ++    ++L   D  E   
Sbjct: 479 NLMSETEA----LMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESR 534

Query: 327 ICAYEAVKICLEKVLKAQEECEIYRQSSL--QCKYFLEEVLHVI-GSALPLADKIFLDFG 383
           IC   A+ IC E + K  +   I   + +     Y  E   +V  G    L   +   F 
Sbjct: 535 IC--RALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQ 592

Query: 384 FDYSKAVDLGYIST----KLHELLQLF-LSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438
               + + L    T    KL EL+ +   ++  + Q   ++F +       +++ +++ P
Sbjct: 593 EKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENP 652

Query: 439 FLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRGGKVN-LLFATDVIEEGMHVPNCSY 495
            L ++    L   G       +T   QK VL++F+  K N LL AT V +EG+ +  C+ 
Sbjct: 653 ILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNL 712

Query: 496 VIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           V+ ++    V+  IQ RGR R   S+ IL+  +  + +  K
Sbjct: 713 VVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEK 753


>gi|353251998|pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
 gi|353251999|pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
 gi|353252000|pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
 gi|353252001|pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
          Length = 797

 Score =  120 bits (300), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 133/521 (25%), Positives = 239/521 (45%), Gaps = 45/521 (8%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ+++ + A   +N +    TG+GKT +++++ +   Q + + G K  ++FLA  V +
Sbjct: 250 RSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPV 308

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGV--DEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
             QQ +V + H  FE  + Y  +G+  + + +   +K I  +D++V+TPQIL+++     
Sbjct: 309 YEQQKNVFKHH--FE-RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT 365

Query: 164 L-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVSS 218
           L SL I   ++ DECH+ TGNHPY  +M  +  +  N     P++ G+TAS     GV +
Sbjct: 366 LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASV----GVGN 421

Query: 219 AMDCEGQISE---LESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQ---SKFCG--S 268
           A + E  I     L S LD Q  +   E+  E++ F+   +   R   +   + F    S
Sbjct: 422 AKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481

Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD--ELGL 326
           +L  + E        ++  +     N  KD   ++      ++    ++L   D  E   
Sbjct: 482 NLMSETEA----LMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESR 537

Query: 327 ICAYEAVKICLEKVLKAQEECEIYRQSSL--QCKYFLEEVLHVI-GSALPLADKIFLDFG 383
           IC   A+ IC E + K  +   I   + +     Y  E   +V  G    L   +   F 
Sbjct: 538 IC--RALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQ 595

Query: 384 FDYSKAVDLGYIST----KLHELLQLF-LSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438
               + + L    T    KL EL+ +   ++  + Q   ++F +       +++ +++ P
Sbjct: 596 EKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENP 655

Query: 439 FLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRGGKVN-LLFATDVIEEGMHVPNCSY 495
            L ++    L   G       +T   QK VL++F+  K N LL AT V +EG+ +  C+ 
Sbjct: 656 ILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNL 715

Query: 496 VIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           V+ ++    V+  IQ RGR R   S+ IL+  +  + +  K
Sbjct: 716 VVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEK 756


>gi|429847845|gb|ELA23398.1| dicer-like protein 2 [Colletotrichum gloeosporioides Nara gc5]
          Length = 1453

 Score =  119 bits (299), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 16/206 (7%)

Query: 36  SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL 95
           ++S   +    R YQL++F  + R+N I  ++TG+GKT +AV+ IK     ++    +++
Sbjct: 60  TASGTQVIMNSRAYQLEMFAESMRQNIIVAMDTGSGKTQVAVLRIK---AELERTATEQI 116

Query: 96  IIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQ 153
           + FLAPTV L  QQ  V++      +++   G   VD W  Q  W   +    ++V T Q
Sbjct: 117 VWFLAPTVSLCAQQLAVLKSQIPAVQIKFLSGDDNVDSWSDQAVWDAVLLNVRIVVSTYQ 176

Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKSDNK--PKVFGMTAS 209
           ILLDAL  AF+ ++ +  IV DE H+  G  P +KIM  FY  HK D +  P + G+TAS
Sbjct: 177 ILLDALSHAFVRMERLSLIVFDEAHNCVGKSPGSKIMTNFYHPHKRDERRVPHIMGLTAS 236

Query: 210 PVVRKGVSSAMDCEGQISELESTLDS 235
           P     V S       I+ LESTLD+
Sbjct: 237 PTFGSKVES-------INVLESTLDA 255



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 109/210 (51%), Gaps = 10/210 (4%)

Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
           L  FR GK+NLL AT V+EEG+ VP C+ VI FD P  + S+IQ RGRAR  +S+ +++L
Sbjct: 492 LHQFRSGKINLLIATSVLEEGIDVPACNLVICFDRPPNLKSFIQRRGRARMRDSKLLMLL 551

Query: 527 ERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC-FLKACTYVKTKSYIVESTGASVTTDS 585
           +R   +  ++ ++ + +E         R+ E    ++    +    + VE+TGA +  D 
Sbjct: 552 DRS--ETFSQEWESMEAEMKRQYEQQERELEHLQQIEEAEELADMQFNVETTGALLDLDI 609

Query: 586 SVNLIHRYCEMLPSDKY--YTPKPIFKYKSAEEAYECELT--LPSNAPFQTIVG---PTS 638
           + + +  +C +L   ++  + P  I K     +A +   T  LPS  P +        T 
Sbjct: 610 AKSHLDHFCRILSPGEFIDWRPDYILKKLDNTDAPDLRYTVVLPSYLPAEVRSAESKSTW 669

Query: 639 RNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
           +++  + +    +A   L++ G +ND+LLP
Sbjct: 670 KSEKNAMKDAAFQAYVALYRAGLVNDNLLP 699



 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 131/296 (44%), Gaps = 59/296 (19%)

Query: 1001 PQMHVHMPPELLVRVD-VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPS 1059
            P+ +  + P  + +VD +P        L+PS++ R+E+ ++A +L   +    R   I  
Sbjct: 919  PKPYSRVYPVPMAKVDAIPAKYAHFGVLIPSILHRIETCLVAKELSTTL---LRPLAIDD 975

Query: 1060 -SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118
             SL+  A++     E  + ERLE LGDS+LK++ + ++    P   E  LS ++   V N
Sbjct: 976  WSLVHTAISAGSAAEPTNYERLEFLGDSILKFSATINVAALNPDWPERLLSFKKDSIVAN 1035

Query: 1119 STLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTK 1178
            STL K      L  +I    F  ++W        RP+                 + +D  
Sbjct: 1036 STLCKAAIKHGLDRFILTKPFTGQKW--------RPI-----------------YVED-- 1068

Query: 1179 VVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG-----------LIAALYMMKWLGID 1227
             V+ +  D   R + +KT+AD  EALIGA  + GG           +   L  +KW  I 
Sbjct: 1069 -VLKRGEDTSTRRISTKTLADIVEALIGASMIDGGEDGGLSKALDCMSIFLQQIKWRRI- 1126

Query: 1228 ADLEVSLVDDCITRASLRSYVPRINE----IKDIESKIGYEFTVKFLLQEAITHAS 1279
                    DDC  R  L    P   E    +K +E  IGY+F  K LL +++THAS
Sbjct: 1127 --------DDC--RQLLYDVAPDNVELPSTLKPLEELIGYDFDKKSLLIQSMTHAS 1172


>gi|281207108|gb|EFA81291.1| RNA-directed RNA polymerase [Polysphondylium pallidum PN500]
          Length = 2852

 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 128/511 (25%), Positives = 223/511 (43%), Gaps = 86/511 (16%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA------IKSNGFKKLIIFL 99
           PR YQ++    A ++NT+ V+ TG GKT++A+MLI+ +          ++   K++++F 
Sbjct: 414 PREYQIESLARAIKKNTLLVIPTGLGKTLVAIMLIQQMVAVNQWTPEQQAGNHKRMVLFT 473

Query: 100 APTVHLVHQQYDVIRVHTD------FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
             T  LV QQ   I+ H           E     + ++      ++ +  + D++V T  
Sbjct: 474 VNTNPLVEQQEKAIKKHNSTLTVLKLNSENRLSDRKIN------FKVQSKRPDIIVATCD 527

Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASPV 211
            +++      L +     I+ DE HHATG+H YTK+M   Y + + K  P++ G++ASP 
Sbjct: 528 SIINLFNTRKLCISDFHTIIFDEVHHATGDHSYTKVMTH-YKEMEAKLYPRILGLSASP- 585

Query: 212 VRKGVSSAMD---CEGQISELESTLDSQVF------TIEDKTEMEVFVPSAKESCRFYDQ 262
                SS  D     G I ++E  L S VF      TI  ++   VF  + +E     D 
Sbjct: 586 -----SSGEDRIKITGNIMKMEKVLASSVFRPNLPPTINLESNQLVFTLTQEEK----DC 636

Query: 263 SKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILY--- 319
            K     +  +L+    + +  L  ++ S        D+ H + R  L  ++   ++   
Sbjct: 637 FKVVKEKINERLKTIMMESNYFLKGMELS--------DNNHPSFRSNLKQFYTWTVHNDL 688

Query: 320 -CLDELG---------LICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI- 368
              +ELG         ++   E     L  +        I    S   + F+EE+ +++ 
Sbjct: 689 KVSNELGDILRIFEWLMVTGVEGFNQFLNYLENDLASTAIQEGRS---RDFIEELHNLVV 745

Query: 369 ---GSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII 425
              G  +  + +        Y + V+      KL E L    S  K      IIFV++  
Sbjct: 746 EKGGKRVVNSSR--------YQRVVE------KLTEKLD---SEEKVINFRGIIFVKKRS 788

Query: 426 AAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE 485
            ++ +   +KK P  + +    + G     D +  + Q+ ++  FR G+  LL AT V+E
Sbjct: 789 TSRSLVHMLKKEPINSKVNAKIIVGHNGE-DGMDSEKQERIMVKFREGQSKLLVATSVLE 847

Query: 486 EGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516
           EG+ V  C++V+ FD    + S IQ RGRAR
Sbjct: 848 EGIDVNTCNFVLCFDDDLDMRSMIQRRGRAR 878


>gi|125773725|ref|XP_001358121.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
 gi|54637856|gb|EAL27258.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
          Length = 2280

 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 133/527 (25%), Positives = 206/527 (39%), Gaps = 154/527 (29%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1750 SVILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1809

Query: 1120 TLH------KLG--------------------TDRKLQGYIRDSAFDPRRWVAPGQLSLR 1153
             L+      +LG                      ++L+  + ++      W     L ++
Sbjct: 1810 NLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIK 1869

Query: 1154 PVP----CEC---GVDTLEVPLDGKFFT-QDTKVVVGKPCD-------------MGHRWM 1192
             +     CE      + L +P   +  T Q T V + +  D             +    +
Sbjct: 1870 NLSSVQICEMVREKAEALGLPGSAEQATPQATTVPLDESNDSCNDFSCFIPYNLVSQHSI 1929

Query: 1193 GSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI------------------------DA 1228
              K+IADC EALIGAY +  G   AL  M WLG+                        DA
Sbjct: 1930 PDKSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPYSRQPAPASDSERTPGSTTPDA 1989

Query: 1229 DLEVSLVDDCIT-RASLRSYVPR--------INEIKDIESKIGYEFTVKFLLQEAITHAS 1279
               V++     T R+ L  Y P         ++  ++ E+ +GY F  +  L +A+THAS
Sbjct: 1990 KQMVTVYGSWPTPRSPLLHYAPNAERELEHLLSGFEEFEASLGYRFRDRSYLLQAMTHAS 2049

Query: 1280 VQEFY---CYQNL----------------------------------------------- 1289
                    CYQ L                                               
Sbjct: 2050 YTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVR 2109

Query: 1290 ---YKHLQHCSTLLLSQITEYVKSFPKPGETT------------DSGPSMKAPKALGDLL 1334
               +K  +H S  L   I  +V+   + G +             D    ++ PKALGD+ 
Sbjct: 2110 HGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISEEYYLLSEEECDDAEDVEVPKALGDVF 2169

Query: 1335 ESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENC 1392
            ESI GA+ +D+ ++LD VW ++  ++SP +      +P  P+REL+EL      F K   
Sbjct: 2170 ESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEK 2229

Query: 1393 TLKGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
               G  V   +     DV   G   G  R+ + AK  AA   L++L+
Sbjct: 2230 LADGRRVRVTV-----DVFCKGTFRGIGRNYRIAKCTAAKCALRQLK 2271



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 126/525 (24%), Positives = 222/525 (42%), Gaps = 108/525 (20%)

Query: 577  TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ- 631
            TGASV   +++ L+++YC  LPSD +     +++   +E +    Y+  L LP N+P + 
Sbjct: 831  TGASVDLSTAIALVNKYCARLPSDTFTKLTALWRCAQSERSGVTLYQYTLRLPINSPLKH 890

Query: 632  TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSEN 676
             IVG     + L+++L  L+AC +LH++G L+D L P       ++E        EP + 
Sbjct: 891  DIVGLPMTTQTLARRLAALQACVELHKIGELDDQLQPIGKEGFRALEPDWECFELEPEDE 950

Query: 677  NLISKKNESLPGAGTTKRKELHGTTPIRALSGRW-------GEKCGVILHAYKFNFACSI 729
             ++   +E  P  GTTKR++ +     + ++  +       G  C   L+  K    C I
Sbjct: 951  QIVQLSDE--PRPGTTKRRQYY----YKRIASEFCDCRPVAGAPC--YLYFIKLTLQCPI 1002

Query: 730  VTE-------IY------SGFVLLIESELDNDVGNFELELYLVSKTVKATVS-SSGQVHL 775
              E       IY       GF +L    +          ++  S  VK ++  +  +V L
Sbjct: 1003 PEEQNTRGRKIYPPEDAQQGFGILTMKRIPKLSA---FSIFTRSGEVKVSLELAKERVVL 1059

Query: 776  DADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVN 835
              +Q+    C   +F N  F  +    K      F +  + +S  +      ++P     
Sbjct: 1060 TPEQIG---CIN-VFLNYTFTNVLRLQK------FLMLFDPDSTEN---CVFIVPTLKTG 1106

Query: 836  TFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVI 895
            +  +GS +I+W                 FL   Q N   GN+ P ++ P        D  
Sbjct: 1107 SPPEGSKKIDW----------------QFLELIQAN---GNTMP-KSVP--------DEE 1138

Query: 896  HLANGSVDAKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYF 951
             LA    DA+  +D VV+  +      + + + EI  + S  S F G   D+ +TF +Y+
Sbjct: 1139 RLAQ-PFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYY 1194

Query: 952  SEKYGIVLIHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHV 1005
              KYG+ + +  QPLL +  +    N L     N  G     S + +K        Q  +
Sbjct: 1195 FVKYGLTIQNAAQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI 1254

Query: 1006 HMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINC 1050
             + PEL      P S+ ++   LP ++ R+  L+LA  +R++++ 
Sbjct: 1255 -LVPELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSA 1298



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
           L  + Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR 
Sbjct: 558 LEHRRQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARA 617

Query: 518 HNSQFILML 526
             +  ++++
Sbjct: 618 APAYHVILV 626



 Score = 45.1 bits (105), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 41/211 (19%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F PR +Q+++   A  RNTI  L   + K  IA+ L++++++  + +G  K+ ++L+  V
Sbjct: 15  FTPRDFQVELLAAAYERNTIICLGHRSSKEFIALKLLQELSRRGRRHG--KVSVYLSCQV 72

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN----------DVLVMTPQ 153
            +  +   +  + T                D + WQ++ +             V ++ P+
Sbjct: 73  GIDKEPASIYTMLTHLT-------------DLRVWQEQPDMQTPFAHNWMDYHVSILRPE 119

Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-----KSDNKPKVFGMTA 208
             L  L    L L  V  IV+++CH +     Y +I+  F       +  ++P++ G+ A
Sbjct: 120 GFLCLLVSGELPLTSVELIVLEDCHDSAV---YQRILPIFLDHILPARPADRPRILGL-A 175

Query: 209 SPVVRKGVSSAMDCE-GQISELESTLDSQVF 238
            P+   G      CE  Q+S +  TL+  V 
Sbjct: 176 GPLHSAG------CELQQLSAMLVTLEQNVL 200


>gi|353251997|pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
 gi|353252013|pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
           Dsrna And Atp Transition State Analogue
 gi|353252014|pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
           Dsrna And Atp Transition State Analogue
          Length = 556

 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 134/521 (25%), Positives = 240/521 (46%), Gaps = 45/521 (8%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ+++ + A   +N +    TG+GKT +++++ +   Q + + G K  ++FLA  V +
Sbjct: 9   RSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPV 67

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGV--DEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
             QQ +V + H  FE  + Y  +G+  + + +   +K I  +D++V+TPQIL+++     
Sbjct: 68  YEQQKNVFKHH--FE-RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT 124

Query: 164 L-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVSS 218
           L SL I   ++ DECH+ TGNHPY  +M  +  +  N     P++ G+TAS     GV +
Sbjct: 125 LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASV----GVGN 180

Query: 219 AMDCEGQISE---LESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQ---SKFCG--S 268
           A + E  I     L S LD Q  +   E+  E++ F+   +   R   +   + F    S
Sbjct: 181 AKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240

Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD--ELGL 326
           +L  + E       +  +  Q S+    KD   ++      ++    ++L   D  E   
Sbjct: 241 NLMSETEALMRTIYSVDTLSQNSK----KDFGTQNYEHWIVVTQRKCRLLQLEDKEEESR 296

Query: 327 ICAYEAVKICLEKVLKAQEECEIYRQSSL--QCKYFLEEVLHVI-GSALPLADKIFLDFG 383
           IC   A+ IC E + K  +   I   + +     Y  E   +V  G    L   +   F 
Sbjct: 297 IC--RALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQ 354

Query: 384 FDYSKAVDLGYIST----KLHELLQLF-LSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438
               + + L    T    KL EL+ +   ++  + Q   ++F +       +++ +++ P
Sbjct: 355 EKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENP 414

Query: 439 FLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRGGKVN-LLFATDVIEEGMHVPNCSY 495
            L ++    L   G       +T   QK VL++F+  K N LL AT V +EG+ +  C+ 
Sbjct: 415 ILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNL 474

Query: 496 VIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           V+ ++    V+  IQ RGR R   S+ IL+  +  + +  K
Sbjct: 475 VVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEK 515


>gi|425626934|gb|AFX89025.1| DCR2 [Mayetiola destructor]
          Length = 1646

 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 148/287 (51%), Gaps = 26/287 (9%)

Query: 403 LQLFLSFGKSTQVLCIIFVERIIAAKV----VERFVKKVPFLTHLTVAYLTGSTTSV--- 455
           L+ F+      Q+  +IFV+R  +AK+    + RF+   P + ++ V ++TGS T +   
Sbjct: 388 LKKFVQDDPKRQLKGLIFVKRRYSAKILCHIIRRFMNSYPDI-NIRVDFMTGSNTKIPDS 446

Query: 456 --DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
               L  K    VL+ F+  +VNL+  T V+EEG+ +  C+ VI FD P+    Y+Q++G
Sbjct: 447 IETILAKKCNDRVLDKFKRDEVNLIVTTSVLEEGIDLQECNLVIAFDRPEHYRQYVQTKG 506

Query: 514 RARQHNSQFILMLERGN-------LKQRNKLFDIIRSERSVTDTALSR-DPEACFLKACT 565
           RAR  NS++++M+  G        +K+  ++ DI+R  + + + A+ R  P    +    
Sbjct: 507 RARMPNSEYVIMVPMGQQLKLEQKVKEWGEVNDILR--QYLVERAVDRIQPNKEDMNKIA 564

Query: 566 YVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE---EAYECEL 622
             +         GA +   S+V+L++RYC++LP D++    P+  ++  E      +  +
Sbjct: 565 EREFNEQYKTIGGAVIDHFSAVSLLNRYCDVLPRDQF--TDPVITWRRTEVKGGKIQVHI 622

Query: 623 TLPSNAPFQT-IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
            LP  +P    I G    N  L+K+    +AC KL++  ALN++ +P
Sbjct: 623 LLPIQSPISAEICGNAMPNLKLAKRSAAFKACIKLYEQKALNENAMP 669



 Score =  103 bits (258), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFL 99
           F  R YQ ++F+     NTI  L TGAGKT IA+M +K    D+ + I   G + L  FL
Sbjct: 15  FKSRGYQDEIFKKCVENNTIIYLPTGAGKTYIAIMAMKHFANDLQKPISEGGKRSL--FL 72

Query: 100 APTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
             T  L  QQ + I+  T   V  Y G   VD W    W +E +++ V+  T QI+LD +
Sbjct: 73  TNTKALATQQAEYIQKLTPLRVAVYTGDLNVDAWKKDKWYEEFDQHQVITATVQIVLDII 132

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD-NKPKVFGMTASPVVRKGVSS 218
           R  +L L     IV DECH+A G HP   +M +F    + + P+V  +  S  +      
Sbjct: 133 RHGYLKLSNFNLIVFDECHNAQGEHPMAHLMAKFTDIPERDHPRV--IGLSGSLTSSSIK 190

Query: 219 AMDCEGQISELESTLDSQVFTIED-KTEMEVFVPSA--KESCRFYDQS 263
             +   ++ +LE+   + + T++     +EV + S   KESC  ++Q+
Sbjct: 191 PQNVLKELKDLEAKFRATIVTVQGLNAYVEVLMHSTKPKESCIQFEQN 238



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 160/404 (39%), Gaps = 116/404 (28%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            +L A+TT    + F ME  E+LGD+ LK+ VS  L   +   HEG LSA +   V N  L
Sbjct: 1166 MLAAITTASAGDLFHMELFEVLGDAFLKFGVSLSLMHNHQDWHEGFLSAMKGKIVGNRNL 1225

Query: 1122 HKLGTDRKLQGYIRDSAFDPRR-WVAPG----------------------QLSLRPVPCE 1158
                   KL G I  + FDP+  W  P                       +LSL  +  E
Sbjct: 1226 CYNAIKMKLPGMINKNNFDPKDDWQPPMFKVDDVIKNKMRQKNISPNLLFELSLSKMEIE 1285

Query: 1159 CG------VDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGG 1212
             G      V+ LE   + ++   D +  +     +G + +  KT +DC EA++GA  V  
Sbjct: 1286 SGKVSEQNVEMLEQTFN-RYVNNDQEGSMQNV--LGLQRIADKTSSDCVEAILGACLVSI 1342

Query: 1213 GLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRI-NEIKDIE------------S 1259
            G+     +++   I    E     D     S + + PR+   IKDIE            +
Sbjct: 1343 GVDRTFKVLEMFNILPKRENV---DITKLLSNQFHNPRVRTNIKDIEIDSFLPNHTELET 1399

Query: 1260 KIGYEFTVKFLLQEAITHAS-------------------VQEF----YCYQ--------- 1287
             IGY+F  +  L +A+TH +                   V +F    Y Y+         
Sbjct: 1400 NIGYKFKDRAYLLQALTHPTYPTNRVTGCYQQLEFLGDAVLDFLITSYIYERCPEMDPGK 1459

Query: 1288 --NLYKHLQHCSTL------------LLSQ---ITEYVKSF-----PKPGETTDS----- 1320
              +L   L +  TL            +LSQ   +TE++  F         E TD      
Sbjct: 1460 LTDLRSALVNNVTLACICVRYNIHLYILSQNAALTEFISQFVDYQIAHNHEVTDHVDLLM 1519

Query: 1321 ---------GPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRI 1355
                        ++ PK LGD++E+++GA+ +D+  NL+  W++
Sbjct: 1520 EEKDVECKMAEYVEVPKTLGDVIEALIGAIFLDSGNNLEVTWKV 1563


>gi|301607421|ref|XP_002933320.1| PREDICTED: interferon-induced helicase C domain-containing protein
           1-like [Xenopus (Silurana) tropicalis]
          Length = 998

 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 138/539 (25%), Positives = 239/539 (44%), Gaps = 92/539 (17%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ++V + A + +N I  L TG+GKT +AV + ++     +  G     I L   V L
Sbjct: 298 RNYQMEVAKPALEGKNIIICLPTGSGKTRVAVYITREHLCKRREEGRLAKAIVLVNKVPL 357

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CWQKEINKNDVLVMTPQILLDALRKA 162
           V Q Y   R    F ++++Y    +   DSQ    + K + ++DV++ T QIL ++L +A
Sbjct: 358 VEQHYR--REFYPF-LKDHYQVTKIS-GDSQLKNSFHKVVQEHDVVICTAQILENSLIQA 413

Query: 163 F------LSLDIVCFIVIDECHHATGNHPYTKIM-----KEFYHKSDNK--------PKV 203
                  + L     I+IDECHH   +  Y  IM     K+  +K ++K        P++
Sbjct: 414 AEDEEEGVQLSDFSLIIIDECHHTQKDAVYNNIMIRYIKKKMQNKRNSKMEKAQVPLPQI 473

Query: 204 FGMTASPVVRKGVSSAMDCEGQISELESTLDS-QVFTIEDKTEM----------EVFVPS 252
            G+TASP V  G  +    E  I  + + +D+ ++ T+++  E           EV +  
Sbjct: 474 LGLTASPGV-GGAKNIKKSEEHILRICANMDAFKIMTVQENAEQLRKQVKDPYKEVKISD 532

Query: 253 AKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSD 312
            K+   F D+ K    ++ GK+E  +SK   +     GSQ                    
Sbjct: 533 EKKKNPFGDKLK----EIMGKIE-EYSKLYPTSD--HGSQ-------------------- 565

Query: 313 YHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI-----YRQSSLQCKYFLEE---- 363
            + + +   D+           +C E + K  +  +I        S +  + F EE    
Sbjct: 566 SYEQWVIQTDKTAAKEGKRKEHVCAEHLRKYNDALQINDTIRMTDSLIHLRKFYEEEKKR 625

Query: 364 -VL------HVIGSALPLADKIFLDFGFDYSK-----AVDLGYISTKLHELLQLFL-SFG 410
            +L      HV    +   D+  +D  +D  K     A +  Y +  L+ L    L  F 
Sbjct: 626 KILLNEGSEHVAPLNIEETDRFLIDLFYDNEKELTAIAKNPKYENENLYALRSSLLEEFT 685

Query: 411 KSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTV--AYLTGSTTSVD--ALTPKVQKEV 466
           ++ Q   IIF +   +A  + +++      T + +  +YL G+  + D   +T   QK++
Sbjct: 686 RNGQARGIIFTKTRQSAVALNQWISDNEKFTEVGIRSSYLIGAGHNSDFKPMTQNEQKQI 745

Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           +  F  G++NLL AT V EEG+ +  C+ VIR+ L     + +Q+RGRAR  +S ++L+
Sbjct: 746 IHKFSTGELNLLVATSVAEEGLDIKECNVVIRYGLVTNEIAMVQARGRARADDSSYVLV 804


>gi|319656775|gb|ADV58759.1| retinoic acid inducible protein I [Anser anser]
          Length = 934

 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 138/524 (26%), Positives = 236/524 (45%), Gaps = 50/524 (9%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ+++ + A   +N +    TG+GKT IA+++ +   Q + + G K  ++FLA  V +
Sbjct: 247 RSYQIELAQPAINGKNALICAPTGSGKTFIALLVCEHHFQNMPA-GRKGKVVFLATKVPV 305

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGV--DEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
             QQ +V + H  FE  + Y  +GV  + + +   +  I  ND++V+TPQIL+++     
Sbjct: 306 YEQQKNVFKQH--FE-RQGYSIQGVSGENFSNVSVENVIEDNDIIVLTPQILVNSFEDGT 362

Query: 164 L-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-----PKVFGMTASPVVRKGVS 217
           L SL +   ++ DECH+ TGNHPY  +M  +  +  N      P++ G+TAS     GV 
Sbjct: 363 LTSLSVFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSPASQLPQILGLTASV----GVG 418

Query: 218 SAMDCEGQISE---LESTLDSQVFTI--EDKTEMEVFVPSAKESCRF-----YDQSKFCG 267
           +A + E  I     L S LD Q  +   E+  +++ F+   +   R      ++      
Sbjct: 419 NAKNIEETIEHICSLCSYLDIQAISTVRENIQDLQRFMNKPEIDVRLVKRRVHNHFAVII 478

Query: 268 SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD--ELG 325
           SDL  + E    K  +  +  Q S+    KD   +       ++    ++L   D  E  
Sbjct: 479 SDLMSETEALMRKIYSVGTVSQNSR----KDFGTQKYEHWIVVTQRKCRLLQLEDKEEES 534

Query: 326 LICAYEAVKICLEKVLKAQEECEIYRQSSL--QCKYFLEEVLHVI-GSALPLADKIFLDF 382
            IC   A+ IC E + K  +   I   + +     Y  E   +V  G    L   +   F
Sbjct: 535 RIC--RALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKF 592

Query: 383 GFDYSKAVDLGYIST----KLHEL---LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435
                +   L    T    KL EL   L     +   T+ L       ++AA  +++ ++
Sbjct: 593 QEKEPELTALSKDETNENPKLEELACILDDAYCYNPQTRTLLFAKTRALVAA--LKKCME 650

Query: 436 KVPFLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRGGK-VNLLFATDVIEEGMHVPN 492
           + P L+++    L   G       +T   QK VL++F+  K   LL AT V +EG+ +  
Sbjct: 651 ENPILSYIKPDVLMGRGRRDQKTGMTLPSQKGVLDAFKTSKDSRLLIATSVADEGIDIAQ 710

Query: 493 CSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           C+ V+ ++    V+  IQ RGR R   S+ IL+  +  + +  K
Sbjct: 711 CNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEK 754


>gi|359320815|ref|XP_003639433.1| PREDICTED: probable ATP-dependent RNA helicase DDX58-like [Canis
           lupus familiaris]
          Length = 923

 Score =  118 bits (295), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 145/558 (25%), Positives = 250/558 (44%), Gaps = 61/558 (10%)

Query: 35  PSSSTNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK 93
           PS ++      PR YQL++   AK  +NTI    TG GKT +A+++ +   +     G K
Sbjct: 230 PSVASTCTPLKPRNYQLELALPAKEGKNTIICAPTGCGKTFVALLICEHHLKKF-PQGQK 288

Query: 94  KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
             I+F A  + +  QQ  V   + +    +  G  G    ++   ++ +  ND++V+TPQ
Sbjct: 289 GKIVFFAIQIPVYEQQNSVFSKYFERLGYKVAGISGATS-ENISVEQIVENNDIIVLTPQ 347

Query: 154 ILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMT 207
           IL++ LR   + SL +   ++ DECH+ + +HPY  IM  +  +     SD  P+V G+T
Sbjct: 348 ILVNCLRNGTIPSLSVFTLMIFDECHNTSKHHPYNMIMFNYLDQKLGGSSDPLPQVVGLT 407

Query: 208 ASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIEDK-TEME--VFVPSA---KESCRFY 260
           AS V      + M+    I +L ++LD+ V  T++D   E+E  V+ P     K   R  
Sbjct: 408 AS-VGIGDAKNTMEAMEYICKLCASLDTSVIATVKDNLEELEEIVYKPQKFFRKVESRTT 466

Query: 261 DQSKFCGSDLKGKLE-VSWSKFD--ASLSKLQGSQLNCYK-----------------DMD 300
           D+ K   S L  + E ++ + FD   ++S++Q       K                    
Sbjct: 467 DRFKCIISQLMRETESLAKNIFDELENVSQIQNRNFGTQKYEQWIVSVQKACMVFQLPNK 526

Query: 301 DKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE--KVLKAQEECEIYRQSSLQCK 358
           D+   + K L  Y + +    D L +I  +  +K  L+  K          + +      
Sbjct: 527 DEESRICKALFLYTSHLRKYNDAL-IINEHARMKDALDYLKDFFTDVRAAGFDEIEQHLT 585

Query: 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCI 418
           Y  EE L  + S       I +D   +  K  DL +I  + + L         + +   I
Sbjct: 586 YRFEEKLQELES-------ISMDLSNENPKLKDLSFILQEEYHL---------NPESRTI 629

Query: 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFR-GGKV 475
           +FV+       +++++++   L+ L    LT  G T     +T   QK  L++FR  G  
Sbjct: 630 LFVKTRALVDALKKWIEENSELSFLKPGILTGRGKTNHNTGMTLPAQKCALDAFRTDGDK 689

Query: 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRN 535
            +L AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+    ++ ++ 
Sbjct: 690 KILIATSVADEGIDIAQCNLVILYEYVGNVIRMIQTRGRGRARGSKCFLLTSNADVIKKE 749

Query: 536 KLFDIIRSERSVTDTALS 553
           KL   I  E+ + D+ LS
Sbjct: 750 KLN--IYKEKIMNDSILS 765


>gi|380422390|ref|NP_001244086.1| probable ATP-dependent RNA helicase DHX58 [Danio rerio]
 gi|344313235|gb|AEN04477.1| probable ATP-dependent helicase LGP2 [Danio rerio]
          Length = 679

 Score =  118 bits (295), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 141/520 (27%), Positives = 226/520 (43%), Gaps = 56/520 (10%)

Query: 47  RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V + A R  N+I  L TG GKT  AV + +   +  K+N     +  L   VHL
Sbjct: 6   RPYQEEVVQAALRGENSIIWLPTGGGKTRAAVYVAEKHLET-KANA---KVAVLVNKVHL 61

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGV--DEWDSQCWQKEINKNDVLVMTPQILLDALRK-- 161
           V Q Y     H    +   Y  K +  D  +   + + +  +D+++ T QIL +AL    
Sbjct: 62  VDQHYMKEFGHY---LRHKYRIKAISGDSSEKDFFGRLVRVSDLVICTAQILENALNNMD 118

Query: 162 --AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVV--R 213
               + +     +VIDECHH      Y KIM  +  K   K    P++ G+TASP     
Sbjct: 119 EDKHVEITDFTLLVIDECHHTNKESVYNKIMWRYVEKKVRKEGRLPQILGLTASPGTGGN 178

Query: 214 KGVSSAMDCEGQISELESTLDSQVFTIEDKTEM-EVFVPSAKES---CRFYDQSKFCGSD 269
           K +  A++   QI    + LDS++ + ++ T M + FVP  K+        D+  F G  
Sbjct: 179 KSLDKAVEHVLQIC---ANLDSKIVSTKNYTPMLQNFVPKPKKEYDIVERRDKDPF-GDH 234

Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRK-QLSDYHAKILYCLDELGLIC 328
           LK  + +       ++S+                  LR+    +Y A ++  L++ G+  
Sbjct: 235 LKSMMLMIHEFMPPTVSR-----------------GLRELGTQEYEADVVE-LEKAGVKV 276

Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQCKY-FLEEVLHVIGSALPLADKIFLDFGFDYS 387
               +  C   + K  +   I     +   +  LEE  +   S L     IFL   FD +
Sbjct: 277 NNRLIAQCALHLRKYNDALLINDTIRMVDAFRVLEEFYNSRSSKLLDGTDIFLQGLFDEN 336

Query: 388 K------AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL- 440
                  A D  Y + KL +L    L   + T    IIF +       +  +VK    L 
Sbjct: 337 SLELKHLASDARYENPKLAQLQSRLLEEFQDTNSRGIIFSKTRRGTHCLNDWVKTNRELQ 396

Query: 441 -THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
             ++T   LTG+    + +T   QK V+  FR G +NLL +T V EEG+ +P C+ V+R+
Sbjct: 397 RVNITAGILTGAGNGANNMTQTEQKSVISHFRQGYLNLLISTSVAEEGLDIPECNLVVRY 456

Query: 500 DLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
            L     +  Q+ GRAR  NS + ++ + G  + R +L +
Sbjct: 457 GLLTNEIAQQQASGRARASNSVYSVVADVGGREVRKELVN 496


>gi|115478498|ref|NP_001062844.1| Os09g0315100 [Oryza sativa Japonica Group]
 gi|113631077|dbj|BAF24758.1| Os09g0315100, partial [Oryza sativa Japonica Group]
          Length = 245

 Score =  117 bits (294), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/234 (36%), Positives = 115/234 (49%), Gaps = 30/234 (12%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            ILEALTT  C E FS E LE LGDS LKY  + HLF  Y  +HEG L+  +   + N+ L
Sbjct: 18   ILEALTTKKCQEEFSQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAAL 77

Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVV 1181
             +L     L GYI    F+PR W+         +PC      L+    G     + K+  
Sbjct: 78   CQLACSSNLVGYIHAEEFNPRDWI---------IPC------LDYDERG-----NKKISF 117

Query: 1182 GKPCDM-GHRWMG--SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDC 1238
              P  M   R M   SK IAD  EALIGAY    G  AA  +MK LG++ +    +  + 
Sbjct: 118  LAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGMNIEFHTEIPVE- 176

Query: 1239 ITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE---FYCYQNL 1289
              + S+++      +++ +E  +GY+F    LL EA+TH S Q      CYQ L
Sbjct: 177  -RKISMKA--EEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRL 227


>gi|198430581|ref|XP_002121377.1| PREDICTED: similar to DEAD/H box polypeptide RIG-I [Ciona
           intestinalis]
          Length = 1013

 Score =  117 bits (294), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 142/552 (25%), Positives = 238/552 (43%), Gaps = 71/552 (12%)

Query: 47  RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQL++ E A    N++ V  TG+GKT +A+ + KD  +    +     ++F+ P V L
Sbjct: 301 RDYQLELAEQAMSGENSLIVAPTGSGKTFVALKVCKDHIEKRPDSR----VVFMVPRVPL 356

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           + QQY++ +     + +    A   DE  S    + I  + +  +TPQIL++ LR+    
Sbjct: 357 IKQQYELFKCFLG-DGQGILRAISTDETLSAPADRLILDHKISFLTPQILVNLLRQDPSF 415

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-------DNKPKVFGMTASPVVRKGVSS 218
           ++ +  ++ DECHH     PY  IMK  YH +       D  P++ G+TASP    GV S
Sbjct: 416 INKLGLLIFDECHHTVKGDPYNSIMK-IYHDNLLKNRRLDILPQIVGLTASP----GVGS 470

Query: 219 AMDCEG---QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275
           A   E     I  L + L+     IE +   +       E+       K   S+ + K+ 
Sbjct: 471 AKSDEAAAKNIKTLLANLNVTTAPIEVQKHKKNLNQYENEAKYELKPIKRQQSEFRTKIR 530

Query: 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKI 335
           +   K +  L        N  K M    K +     DY A ++    +  L+     V  
Sbjct: 531 LVMDKIETKLKLEFRRNDNATKGMKFDLKAM-SGTQDYEAWVVSFYKKSTLL-----VDP 584

Query: 336 CLEKVLKAQEECEIYRQSSL---------QCKYFLEEVLHVIGSALP-------LADKIF 379
            L +   A         SSL           K +LEE L +I    P       L D+I 
Sbjct: 585 NLSQRFMAYARYLWKYNSSLWINDHVQSRHAKEYLEEELPLIQPRTPVEAELKKLHDEIV 644

Query: 380 LDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVV----ERFV 434
            +   + +  ++       L+++L+    F K  +  CIIFV  R IA  ++    E  V
Sbjct: 645 PEIMEENNPMIN------ALYKILK--TEFTKQPESKCIIFVRTRPIAKALITCIEESEV 696

Query: 435 KKVPFLTHLTVAYLTGSTTSVD--ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPN 492
           +K+    HL    LTG+  +V+   +T   Q++ + SFR G+  ++ AT V EEG+ +  
Sbjct: 697 EKL----HLNPKQLTGAGAAVELGGMTKATQEDTIASFRDGRCKVIVATSVAEEGLDIKA 752

Query: 493 CSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML---------ERGNLKQRNKLFDIIRS 543
           C+ +I ++        +Q +GR R   S+ I++          E+ N+ +     DI++ 
Sbjct: 753 CNLIITYNYSTNEIGQVQRQGRGRAKGSKMIILAYDDSSHIQREKSNIIRVKFTHDILQM 812

Query: 544 ERSVTDTALSRD 555
            R +    L +D
Sbjct: 813 LRQMDPEQLKKD 824


>gi|336378007|gb|EGO19166.1| hypothetical protein SERLADRAFT_443209 [Serpula lacrymans var.
           lacrymans S7.9]
          Length = 1489

 Score =  117 bits (294), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 125/240 (52%), Gaps = 34/240 (14%)

Query: 34  GPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK 93
            PS ST +++   R YQ ++ + + + N I   +TG+GKT IA++ +K I    + N   
Sbjct: 8   APSPSTLALSQT-RGYQQEMLDASLKGNIIIAQDTGSGKTRIAILRMK-IEAECEPN--- 62

Query: 94  KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVMTP 152
           K+  FLAPTV L  QQ DVI++     V    GA    +W +S  W+  + ++ +LV TP
Sbjct: 63  KVSWFLAPTVALCQQQADVIKLDLPVSVGMISGACEPIQWKESALWRGVLQRHRILVTTP 122

Query: 153 QILLDALRKAFLSLDI-VCFIVIDECHHATGNHPYTKIMKEFYHK--------------- 196
           Q+LLDALR  +++L   +  ++ DE HHAT NHPY  IMKEFY K               
Sbjct: 123 QVLLDALRHGYINLGRDIGLLIFDEAHHATDNHPYNCIMKEFYFKLPVRQSDLDDAISRG 182

Query: 197 -----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFT-IEDKTEMEVFV 250
                 + +P V G+TASP+         D +     LES LD  + +  +++ E+  FV
Sbjct: 183 VQRKFRNERPMVLGLTASPIF------GGDPQHAFRVLESNLDGIIRSPQQNRQELAKFV 236



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 142/294 (48%), Gaps = 23/294 (7%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDS 1086
            +LPS+++ L  +     LR+ +   +    IP  L+  ALT        + ERLE LGD 
Sbjct: 985  ILPSIIRHLSVMTTVISLRDTLFTGTPLSKIPLPLLTTALTAPVSQGLINYERLETLGDG 1044

Query: 1087 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVA 1146
            VLK+ VS HL   +P  HEG L+ R+   V N+ L K    +KL  +I    F PR+W  
Sbjct: 1045 VLKFIVSIHLMAAFPHWHEGYLTRRKDHGVSNAQLAKNAVLKKLYRWIIRDRFTPRKWT- 1103

Query: 1147 PGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
            P   +  P   E  +   EV ++G   ++ ++ V+ +        + +K +AD  E+LIG
Sbjct: 1104 PRYCT--PPQNEDQIKE-EVEVEGS-DSRKSRAVIEE--------LSTKMLADVVESLIG 1151

Query: 1207 AYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRIN----EIKDIESKIG 1262
            A Y  GG    +   K+ G+   LE   +  C+  A   S V   +    ++ D+E  +G
Sbjct: 1152 AAYEHGGFDLGIECAKFFGL--GLEWWGLAKCVETA--LSVVETTDDFPAQVTDVELMLG 1207

Query: 1263 YEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVKSFPKPG 1315
            Y FT K LL EA+THAS Q F      Y+ ++     +L   IT+Y+   P  G
Sbjct: 1208 YNFTRKLLLIEALTHASHQ-FDTRTVSYERMEFLGDSILDMIITDYLYHVPGKG 1260



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 38/293 (12%)

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
           L  + Q   L  FR G +NL+ AT V EEG+ +  C  VIR+D P  ++S+ QSRGRAR+
Sbjct: 469 LLKQSQANTLLDFRSGDINLIIATAVAEEGLDIQACGNVIRWDAPNNMASWAQSRGRARR 528

Query: 518 HNSQFILMLERGNLKQRN---------KLFDIIRSERSVTDTALSRDPEACFLKACTYVK 568
             S F+LM + G+  ++          ++ D+  +++  T      + E+          
Sbjct: 529 ERSSFVLMFQAGSDDKQQVMKWEQLEKQMMDLYSNDQRDTGNTHDENDESTLDDHGDL-- 586

Query: 569 TKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPI--------------FKYKSA 614
              + VESTGA ++  S+V+ ++ +C +LP+    +  PI              F++KS 
Sbjct: 587 --EFQVESTGALLSLQSAVSHLNHFCSILPNSYRVSHLPIYDIDPPDMPEGWHSFEHKSN 644

Query: 615 EEAYE----CELTLPSNAPFQTIVGPTSR---NKNLSKQLVCLEACEKLHQVGALNDHLL 667
              Y     C +TLP   P +  V    R   +K  + Q V   A   L+    LND+LL
Sbjct: 645 VPPYPGPFGCTVTLPRLLPSELRVFSVKREYPSKQSAIQHVAFNAYLALYNAKLLNDNLL 704

Query: 668 P---SVEEPSENNLISKKNESLPGAGT-TKRKELHGTTPIRALSGRWGEKCGV 716
           P    +EE  E  + +   +    +GT T R +L    P +  +  W  +  V
Sbjct: 705 PLTSVIEENLEEEVKALLRDVEKRSGTATVRGQLDPWIPTKINNKWWSTELVV 757


>gi|145489315|ref|XP_001430660.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830695|emb|CAI39097.1| Dicer-like ribonuclease with mutated helicase and Rnase III domains
           [Paramecium tetraurelia]
 gi|124397759|emb|CAK63262.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1596

 Score =  117 bits (294), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 36/224 (16%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK---KLIIFLAPTV 103
           R YQ++++E    +N+I  LETG GKT++ +ML+ D         FK   K I+FLA TV
Sbjct: 112 RDYQIELYEKGIGKNSIIYLETGLGKTLVIIMLMWD-------RLFKYPDKKIVFLANTV 164

Query: 104 HLVHQQYDVIR---------VHTD-----------FEVEEYYGAKGVDEWDSQCWQKEIN 143
            LV QQ   I+         +  D            ++   +G+K  D W+   WQ  + 
Sbjct: 165 QLVEQQAQQIKQKLPRVAELISDDDSMIVKAKEIGSKLNVLHGSKCTDIWNQIMWQIILE 224

Query: 144 KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK----SDN 199
           ++ +LVMT QI L+ LRK  + +    FI +DECH+A  +HPY  I+KEFY K    SDN
Sbjct: 225 ESKILVMTTQIFLNILRKGLVKISNFSFIAMDECHNAIQDHPYNYILKEFYLKTKFQSDN 284

Query: 200 K--PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE 241
           +  P++ G TASPV+     S      ++ +L + +DSQ   I+
Sbjct: 285 QFLPQIVGATASPVMNSKSVSNNQLLQELLQLSANMDSQYLHID 328



 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 113/227 (49%), Gaps = 21/227 (9%)

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
           ++  VQ +++  FR GK+ +L +T V EEG+ +P C+YVI F+   +  +Y+Q +GRAR+
Sbjct: 607 ISSTVQNDIINKFRQGKIKILISTSVAEEGIDIPMCNYVIGFNPISSSKAYVQMKGRARK 666

Query: 518 HNSQF-ILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSY---- 572
            NSQF I M+++    Q      +  + + + +   +   +    KA   +++K+Y    
Sbjct: 667 ENSQFMIFMVDKLQQAQVQSHQQVQNNIKQIIEELTAPQRQQMLNKAMQTLQSKTYENTY 726

Query: 573 ----IVESTGASVTTDSSVNLIHRYCEML---PSDKYYTPKPIFKY---KSAEEAYECEL 622
                +E +GA + T+ S  LI + C+      +DK      I++        + +   L
Sbjct: 727 FDSFEIEGSGALINTNWSCQLIQQLCQKFNQKDADKTQPKYAIYQLHGNAQTNQQFIAFL 786

Query: 623 TLPSNAP---FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL 666
            LP +     F   + P+S++   +K     EA  +L+Q G ++D+L
Sbjct: 787 LLPISMKSFIFYGKLAPSSKD---AKASAAFEASVQLYQKGYIDDNL 830


>gi|336365445|gb|EGN93795.1| hypothetical protein SERLA73DRAFT_115225 [Serpula lacrymans var.
           lacrymans S7.3]
          Length = 1493

 Score =  117 bits (294), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 125/240 (52%), Gaps = 34/240 (14%)

Query: 34  GPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK 93
            PS ST +++   R YQ ++ + + + N I   +TG+GKT IA++ +K I    + N   
Sbjct: 12  APSPSTLALSQT-RGYQQEMLDASLKGNIIIAQDTGSGKTRIAILRMK-IEAECEPN--- 66

Query: 94  KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVMTP 152
           K+  FLAPTV L  QQ DVI++     V    GA    +W +S  W+  + ++ +LV TP
Sbjct: 67  KVSWFLAPTVALCQQQADVIKLDLPVSVGMISGACEPIQWKESALWRGVLQRHRILVTTP 126

Query: 153 QILLDALRKAFLSLDI-VCFIVIDECHHATGNHPYTKIMKEFYHK--------------- 196
           Q+LLDALR  +++L   +  ++ DE HHAT NHPY  IMKEFY K               
Sbjct: 127 QVLLDALRHGYINLGRDIGLLIFDEAHHATDNHPYNCIMKEFYFKLPVRQSDLDDAISRG 186

Query: 197 -----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFT-IEDKTEMEVFV 250
                 + +P V G+TASP+         D +     LES LD  + +  +++ E+  FV
Sbjct: 187 VQRKFRNERPMVLGLTASPIF------GGDPQHAFRVLESNLDGIIRSPQQNRQELAKFV 240



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 142/294 (48%), Gaps = 23/294 (7%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDS 1086
            +LPS+++ L  +     LR+ +   +    IP  L+  ALT        + ERLE LGD 
Sbjct: 989  ILPSIIRHLSVMTTVISLRDTLFTGTPLSKIPLPLLTTALTAPVSQGLINYERLETLGDG 1048

Query: 1087 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVA 1146
            VLK+ VS HL   +P  HEG L+ R+   V N+ L K    +KL  +I    F PR+W  
Sbjct: 1049 VLKFIVSIHLMAAFPHWHEGYLTRRKDHGVSNAQLAKNAVLKKLYRWIIRDRFTPRKWT- 1107

Query: 1147 PGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIG 1206
            P   +  P   E  +   EV ++G   ++ ++ V+ +        + +K +AD  E+LIG
Sbjct: 1108 PRYCT--PPQNEDQIKE-EVEVEGS-DSRKSRAVIEE--------LSTKMLADVVESLIG 1155

Query: 1207 AYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRIN----EIKDIESKIG 1262
            A Y  GG    +   K+ G+   LE   +  C+  A   S V   +    ++ D+E  +G
Sbjct: 1156 AAYEHGGFDLGIECAKFFGL--GLEWWGLAKCVETA--LSVVETTDDFPAQVTDVELMLG 1211

Query: 1263 YEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVKSFPKPG 1315
            Y FT K LL EA+THAS Q F      Y+ ++     +L   IT+Y+   P  G
Sbjct: 1212 YNFTRKLLLIEALTHASHQ-FDTRTVSYERMEFLGDSILDMIITDYLYHVPGKG 1264



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 38/293 (12%)

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
           L  + Q   L  FR G +NL+ AT V EEG+ +  C  VIR+D P  ++S+ QSRGRAR+
Sbjct: 473 LLKQSQANTLLDFRSGDINLIIATAVAEEGLDIQACGNVIRWDAPNNMASWAQSRGRARR 532

Query: 518 HNSQFILMLERGNLKQRN---------KLFDIIRSERSVTDTALSRDPEACFLKACTYVK 568
             S F+LM + G+  ++          ++ D+  +++  T      + E+          
Sbjct: 533 ERSSFVLMFQAGSDDKQQVMKWEQLEKQMMDLYSNDQRDTGNTHDENDESTLDDHGDL-- 590

Query: 569 TKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPI--------------FKYKSA 614
              + VESTGA ++  S+V+ ++ +C +LP+    +  PI              F++KS 
Sbjct: 591 --EFQVESTGALLSLQSAVSHLNHFCSILPNSYRVSHLPIYDIDPPDMPEGWHSFEHKSN 648

Query: 615 EEAYE----CELTLPSNAPFQTIVGPTSR---NKNLSKQLVCLEACEKLHQVGALNDHLL 667
              Y     C +TLP   P +  V    R   +K  + Q V   A   L+    LND+LL
Sbjct: 649 VPPYPGPFGCTVTLPRLLPSELRVFSVKREYPSKQSAIQHVAFNAYLALYNAKLLNDNLL 708

Query: 668 P---SVEEPSENNLISKKNESLPGAGT-TKRKELHGTTPIRALSGRWGEKCGV 716
           P    +EE  E  + +   +    +GT T R +L    P +  +  W  +  V
Sbjct: 709 PLTSVIEENLEEEVKALLRDVEKRSGTATVRGQLDPWIPTKINNKWWSTELVV 761


>gi|348681952|gb|EGZ21768.1| hypothetical protein PHYSODRAFT_489360 [Phytophthora sojae]
          Length = 715

 Score =  117 bits (293), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 8/166 (4%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R +Q ++ E+A+ +N + V +TG GKT +A+ L+ +     +     K   F+APT  LV
Sbjct: 7   RAFQREILELAREKNVVMVGDTGIGKTFLAIALLSE-----QDFSGDKRAFFMAPTRQLV 61

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            Q    IR  +   V  Y G+   D WD+  W++E+    VLV TP+I+ + L K +++L
Sbjct: 62  VQITAKIRQTSTLSVNAYCGSTA-DLWDAAQWERELQLTRVLVCTPEIVRNVLLKGYVTL 120

Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK--PKVFGMTASP 210
             +  +V DECHH T  HPY +++K F H+ D    P++FG TA P
Sbjct: 121 SRMNLLVFDECHHVTKRHPYAQVVKIFNHEDDAAALPRIFGTTACP 166



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 17/180 (9%)

Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
           PK++   L  F  G + +L +T V  EG+  P C  ++  D   T    +Q +GRAR  +
Sbjct: 471 PKMET-TLRKFESGSIRVLISTAVSVEGVDFPQCGLIVVMDRVGTSRMLMQLKGRARHED 529

Query: 520 SQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRD--------PEACFLKACTYVKTKS 571
                + E G+L        ++R   ++     S +        P +   +     + K 
Sbjct: 530 GIVYYLAEEGDLAHEVYYKQLVREAETINQLEFSHERVETIQQQPRSIAAQMMGNGEQKI 589

Query: 572 YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAY------ECELTLP 625
            I ESTGA +  DSS+  I+++C+ LPS + YT      Y  +EE Y        EL LP
Sbjct: 590 EI-ESTGAVLDLDSSIVCINQFCQSLPS-RLYTVDVKRLYSFSEERYGGKSMFTAELNLP 647


>gi|414453403|gb|AFX00003.1| Dicer [Mnemiopsis leidyi]
          Length = 2002

 Score =  117 bits (293), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 146/319 (45%), Gaps = 34/319 (10%)

Query: 395  ISTKLHELLQLFLSFGKSTQ------VLCIIFVER----IIAAKVVERFVKKVPFLTHLT 444
            +S K +ELL+  L    ++          I+F++R    I   K + +  K+V    ++ 
Sbjct: 765  MSVKFYELLKYILRLQHNSSENGTDAPRIIVFIQRRRVVIAMHKYLCKLRKEVEGCANIK 824

Query: 445  VAYLTGSTT--------------SVDAL--TPKVQKEVLESFRGGKVNLLFATDVIEEGM 488
              Y+ G TT               VD L    K Q++ L  FR GK N+L AT V+EEG+
Sbjct: 825  ACYVLGGTTGSSKDDDESKLSDFEVDYLETIKKQQEQALIDFREGKHNILLATSVVEEGL 884

Query: 489  HVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF------DIIR 542
             +P C+ VIR+D P+T  +Y+QSRGRAR+  ++F+  ++     ++ +L       +I+ 
Sbjct: 885  DIPACNIVIRYDFPQTYRAYVQSRGRARKKPAKFVFFMKETEKNEKMRLLGSFHDIEILL 944

Query: 543  SERSVTDTALSRDPEACFLKACTYVKTKSYI-VESTGASVTTDSSVNLIHRYCEMLPSDK 601
             E +   +  +   E        Y K    + VE TGA VT + ++  ++ YC  LP D 
Sbjct: 945  REYASDMSPRADHQEDDDDDEFNYNKLIPPLEVEGTGAKVTANLAIQRLNFYCSQLPKDD 1004

Query: 602  YYTPKPIFKYKSAEEAYECELTLPSNAPFQT-IVGPTSRNKNLSKQLVCLEACEKLHQVG 660
            Y    P          ++  +TLP   P +  I G    NK L+K    ++  E L+   
Sbjct: 1005 YTDVMPSDYTIEDARGFKTTITLPKLCPVKIPIEGQYMSNKKLAKMSAAMKTLEFLYSAN 1064

Query: 661  ALNDHLLPSVEEPSENNLI 679
             L D LLP   +   N L+
Sbjct: 1065 ELTDTLLPKFRQKEVNPLL 1083



 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 175/456 (38%), Gaps = 123/456 (26%)

Query: 939  NTDD-DSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMN 997
            N DD +++T+  Y   K+ I L+HP + LL  +     +  L                  
Sbjct: 1322 NPDDLETQTYEEYHYAKHDIKLVHPTKNLLECRNVTRHYAFL------------------ 1363

Query: 998  TKKPQMHVHMPPELLVRV-----DVPISVVKSLYLLPSVMQRLESLMLASQLREEI---- 1048
            T+     ++ PP  L+        +P S+      LPS++ R+E+  L+++L + +    
Sbjct: 1364 TEHASKKLNRPPMFLIGEIHQVHPMPSSLWSQATCLPSILWRIETFCLSNELTDNVYKGC 1423

Query: 1049 -------NCHSRNF--------------------HIPSSLILEALTTLGCCESFSMERLE 1081
                     H  N+                     I     L ++T   C E +++ERLE
Sbjct: 1424 NLKIDLLASHESNYFNERTDNLMARLRRDLEYKGDIDWFETLHSITHKSCGEEYNLERLE 1483

Query: 1082 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH-KLGTDRKLQGYIRDSAFD 1140
             LGD  LK+  + + + T P KHEG LS  RS  + N  L  +   + +L  YI +   D
Sbjct: 1484 FLGDRFLKFVSTLYYYRTMPDKHEGWLSRYRSEMISNQNLAVRSCKEIELPRYILNKKVD 1543

Query: 1141 PR-RWVAPGQLSLRPV----PCECGVDT------------------LEVP---LD----- 1169
            P+  W+ P  LS   +      +  VD+                  +E+P   +D     
Sbjct: 1544 PKSNWIPPCFLSTHTLNKISEAQNTVDSVSKEAREYLELLQNSTEDIEIPEGYIDEIKLL 1603

Query: 1170 ---------GKFFTQDTKV-----VVGKPCDM---GH-RWMGSKTIADCAEALIGAYYVG 1211
                     G F    +        + K CD+   GH + MG+K +AD  EAL+G     
Sbjct: 1604 KKARPFLEVGHFLMSTSNYNSYSDALEKLCDIIPVGHLQEMGTKDVADSMEALLGLCVAR 1663

Query: 1212 GGLIAALYMMKWLGIDA----------DLEVSLVDDC-------ITRASLRSYVPRINEI 1254
             G    + ++  + +            DL   L           +   ++R    R + +
Sbjct: 1664 YGYRKGVDLLDRIKVTTFQAQSEAEPDDLNNHLYKQTPPSQISNLNPVAIRLARSRCDNL 1723

Query: 1255 KDIESKIGYEFTVKFLLQEAITHASVQEF-YCYQNL 1289
            + +E  IGYEF     L EA+THAS  E   CYQ L
Sbjct: 1724 RTVEKAIGYEFKEPLYLLEALTHASFTEIDACYQRL 1759



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 21/106 (19%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--------- 93
           +F+PR YQ+++   AK+ NTI ++ TG GKT +AV+LIK     + ++ ++         
Sbjct: 546 DFVPRDYQIEMLNRAKKENTIVMMPTGTGKTFVAVLLIKHFIHQVMTDPWRGPCAENSSC 605

Query: 94  ------------KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGA 127
                       +   FL   V LV QQ  V+  HT   V EY G 
Sbjct: 606 GNGKCSCGNKSWRRTFFLVNQVTLVSQQKRVLERHTGVAVGEYSGT 651



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 74/168 (44%), Gaps = 36/168 (21%)

Query: 1062 ILEALTTLGCCE-SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            +LEALT     E     +RLE LGD+VL   +   ++  +P+  +GQ++   S  VCN+T
Sbjct: 1740 LLEALTHASFTEIDACYQRLEFLGDAVLDVLMVFRIYEDHPEYDQGQMTDLLSSLVCNTT 1799

Query: 1121 LHKLGTDRKL-QGYIRDSA------------FDP---RRWVAPGQLSLRPVPCECGVDTL 1164
            L K+ T  +L +  + DSA            F+     +W     LSL  V     VDT+
Sbjct: 1800 LSKVCTKLQLHKSLLYDSAELFNVLAGFFMNFEKDQLEQWCK--DLSLERV----FVDTV 1853

Query: 1165 --EVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYV 1210
              + P        D KVV              K + D  E++IGA Y+
Sbjct: 1854 DCDTPDKIPILNLDNKVV-----------QAPKLLGDLVESVIGAIYL 1890


>gi|334303056|gb|AEG75816.1| retinoic acid inducible protein I [Anser anser]
          Length = 933

 Score =  117 bits (293), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 137/524 (26%), Positives = 236/524 (45%), Gaps = 50/524 (9%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ+++ + A   +N +    TG+G+T IA+++ +   Q + + G K  ++FLA  V +
Sbjct: 246 RSYQIELAQPAINGKNALICAPTGSGRTFIALLVCEHQFQNMPA-GRKGKVVFLATKVPV 304

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGV--DEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
             QQ +V + H  FE  + Y  +GV  + + +   +  I  ND++V+TPQIL+++     
Sbjct: 305 YEQQKNVFKQH--FE-RQGYSIQGVSGENFSNVSVENVIEDNDIIVLTPQILVNSFEDGT 361

Query: 164 L-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-----PKVFGMTASPVVRKGVS 217
           L SL +   ++ DECH+ TGNHPY  +M  +  +  N      P++ G+TAS     GV 
Sbjct: 362 LTSLSVFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSPASQLPQILGLTASV----GVG 417

Query: 218 SAMDCEGQISE---LESTLDSQVFTI--EDKTEMEVFVPSAKESCRF-----YDQSKFCG 267
           +A + E  I     L S LD Q  +   E+  +++ F+   +   R      ++      
Sbjct: 418 NAKNIEETIEHICSLCSYLDIQAISTVRENIQDLQRFMNKPEIDVRLVKRRVHNHFAVII 477

Query: 268 SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD--ELG 325
           SDL  + E    K  +  +  Q S+    KD   +       ++    ++L   D  E  
Sbjct: 478 SDLMSETEALMRKIYSVGTVSQNSR----KDFGTQKYEHWIVVTQRKCRLLQLEDKEEES 533

Query: 326 LICAYEAVKICLEKVLKAQEECEIYRQSSL--QCKYFLEEVLHVI-GSALPLADKIFLDF 382
            IC   A+ IC E + K  +   I   + +     Y  E   +V  G    L   +   F
Sbjct: 534 RIC--RALFICAEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYAELEQHLTAKF 591

Query: 383 GFDYSKAVDLGYIST----KLHEL---LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435
                +   L    T    KL EL   L     +   T+ L       ++AA  +++ ++
Sbjct: 592 QEKEPELTALSKDETNENPKLEELACILDDAYRYNPQTRTLLFAKARALVAA--LKKCME 649

Query: 436 KVPFLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRGGK-VNLLFATDVIEEGMHVPN 492
           + P L+++    L   G       +T   QK VL++F+  K   LL AT V +EG+ +  
Sbjct: 650 ENPILSYIKPDVLMGRGRRDQKTGMTLPSQKGVLDAFKTSKDSRLLIATSVADEGIDIAQ 709

Query: 493 CSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           C+ V+ ++    V+  IQ RGR R   S+ IL+  +  + +  K
Sbjct: 710 CNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEK 753


>gi|116205049|ref|XP_001228335.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51]
 gi|88176536|gb|EAQ84004.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51]
          Length = 1227

 Score =  116 bits (291), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 165/654 (25%), Positives = 261/654 (39%), Gaps = 128/654 (19%)

Query: 81  KDIAQAIKSNGFK-KLIIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-- 136
           K+ A  +K+     +++ FLAPTV L  QQ++ IR      + +   G+  VD W +Q  
Sbjct: 80  KNAADEVKNPQLTVQIVWFLAPTVSLAEQQFEAIRAQIPGVQSKLILGSDSVDAWSTQPG 139

Query: 137 CWQKEINKNDVLVMTP--QILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194
            W      + VL+ TP  Q+ L A                   H+A G +P  ++MKE Y
Sbjct: 140 VW------DAVLLNTPIPQLTLIA-------------------HNAKGRNPIARLMKEHY 174

Query: 195 HKSDNK----PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFV 250
             S  +    P + G+TASP++R  +S        +  LE TLD+ V     K   E+  
Sbjct: 175 VPSKAEGLPVPHILGLTASPLMRSNLSD-------LEVLEQTLDA-VCKTPSKHRDELMA 226

Query: 251 PSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDM-DDKHKTLRKQ 309
              +   +          +   +   + +K  ++  +L   Q    + +  DK    R +
Sbjct: 227 QVNRPEMKVTAYGSMINPETDTEPTPTMAKLKSAYLELDIRQDPYVRHLLTDKTPRGRAR 286

Query: 310 LSD-YHAKILYCLDELGLIC--AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLH 366
           L      K  YC  ++   C  A++  K C                      Y++  V+ 
Sbjct: 287 LKKVLLTKQTYCRSQMEAFCRGAFDICKSC----------------GPWAADYYIHRVIS 330

Query: 367 V-IGSALPLA-----------DKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQ 414
             +    P+A           ++ +L   F    A     I T L   +Q  L   +S Q
Sbjct: 331 AFVKDPAPVAPGHTNENLAEQERKYLVEAFLKVDAQAPPEIPTTLSPKVQALLGALESHQ 390

Query: 415 --VLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPK-------VQKE 465
                I+FV       V+   +   P  +H    Y  GS      +  +        QKE
Sbjct: 391 ENPFGIVFVRERATVAVLSHILAVHPKTSH---RYRVGSMVGTSRVPGRRQDFLDLSQKE 447

Query: 466 VLES---FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
            L S   FR G +NLL AT V+EEG+ VP C+ VI FD P  + S+IQ RGRAR   S+ 
Sbjct: 448 YLLSLLSFRKGTINLLVATSVLEEGIDVPACNLVICFDKPDNLKSFIQRRGRARMSASRL 507

Query: 523 ILMLE-------RG--NLKQ--RNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS 571
            L++E       RG  NL+Q  + K  D +R  + + +     D +   L++        
Sbjct: 508 YLLVEDEADGSSRGWQNLEQEMKRKYEDDMRENQRLEEIENIEDMDYPVLRS-------- 559

Query: 572 YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA---------YECEL 622
              + TGA +T   + + +  +C  L + K+    P +     E            +  +
Sbjct: 560 ---QETGAQITILDAKSHLEHFCATLSTRKFVDWSPFYVVHDLEGNPVDPHQPGLRKATV 616

Query: 623 TLP-SNAP----FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVE 671
            LP S AP    FQ++   TS   N  K     +A  KL++VG +N +LLP  E
Sbjct: 617 HLPVSLAPELRCFQSLQAWTS-EANACKD-AAFQAYAKLYEVGLVNHNLLPIRE 668



 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 120/279 (43%), Gaps = 44/279 (15%)

Query: 1009 PELLVRVD-VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT 1067
            P   VRVD VP    +   ++P++   LE  ++A  L E     +    +  SLI+ A+T
Sbjct: 897  PADQVRVDKVPAIYAQIGMMIPAITHALEVHLVAKDLLESRLEQTGITDL--SLIVTAIT 954

Query: 1068 TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTD 1127
                      ER+E LGDS+LK+  + +   TY K  EG LS  +   V NS L +   D
Sbjct: 955  ASAARGPTDYERIEFLGDSILKFCTTINCSATYLKFPEGCLSPLKDKIVSNSRLFRAAVD 1014

Query: 1128 RKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM 1187
              L  YI   AF   +W        RP   E   D +E P                P   
Sbjct: 1015 FGLDRYIIHKAFTLHKW--------RPTYVE---DLIENP----------------PSAT 1047

Query: 1188 GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMK-------WLGIDADLEVSLVDDCIT 1240
              R + +K IAD  EALIG  +V GG+  AL  M        W  I+   EV        
Sbjct: 1048 ETRRISTKIIADVVEALIGTAFVSGGISKALACMSLFLPDVAWNSIEYGREV-----MYN 1102

Query: 1241 RASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
             A     +PR   ++ +ES +GY FT K LL EA+TH S
Sbjct: 1103 EAPDDEPLPRT--MRQLESLVGYTFTKKALLVEAMTHPS 1139


>gi|242076430|ref|XP_002448151.1| hypothetical protein SORBIDRAFT_06g022200 [Sorghum bicolor]
 gi|241939334|gb|EES12479.1| hypothetical protein SORBIDRAFT_06g022200 [Sorghum bicolor]
          Length = 194

 Score =  116 bits (290), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/149 (42%), Positives = 88/149 (59%), Gaps = 16/149 (10%)

Query: 45  IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           I R YQL + + A   N +  L TG GKT IAV+L+ ++   I+    +++ IFLAPT+ 
Sbjct: 26  IARKYQLDLCKRAVEENIVVYLGTGCGKTHIAVLLMYELGHLIRKPS-REVCIFLAPTIP 84

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           LV Q            V+ YYG+ G +  D Q W+KEI + +VLVMTPQILL  LR  F+
Sbjct: 85  LVRQ------------VQRYYGS-GKNSRDHQAWEKEIGEYEVLVMTPQILLHNLRHCFI 131

Query: 165 SLDIVCFIVIDECHHATGN--HPYTKIMK 191
            +D +  ++ DECHHA     HPY +IMK
Sbjct: 132 KMDSIALLIFDECHHAQAQKRHPYAQIMK 160


>gi|260809266|ref|XP_002599427.1| hypothetical protein BRAFLDRAFT_249506 [Branchiostoma floridae]
 gi|229284705|gb|EEN55439.1| hypothetical protein BRAFLDRAFT_249506 [Branchiostoma floridae]
          Length = 672

 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 135/564 (23%), Positives = 239/564 (42%), Gaps = 65/564 (11%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ+++ E A + RNTI    TG+GKT +A+ + +D  + + +   ++ ++FL   V L
Sbjct: 2   RGYQMELAEQALQGRNTIICAPTGSGKTRVAIKITRDHLEDVDA---RRRVVFLVNKVPL 58

Query: 106 VHQQYDVIR--VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
           V QQY      +   +++    G    D    +     +   DV+++T Q+L +ALR   
Sbjct: 59  VEQQYKAFSEYLSPKYDILPLSGETAADIPVGET----LPDYDVIILTAQVLENALRDEL 114

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK------SDNKPKVFGMTASPVVRKGVS 217
           +SLD    ++ DECHH   N PY  IM  +  +      S + P++ G+TAS  V K   
Sbjct: 115 ISLDTFSMLIFDECHHCQKNDPYNAIMTRYIKQKVEMKSSISLPQIIGLTASLGVGKAKG 174

Query: 218 SAMDCE---GQISELESTLDSQVFTIED-------KTEMEVFVPSAKESCRFYDQSKFCG 267
                E   G  + L++   SQV   +D       K + EV   S +    F D      
Sbjct: 175 QKEAVEHILGACANLDAAWISQVVEHKDELRKYNQKPDEEVKPVSGRSEDPFADMINMIM 234

Query: 268 SDLKGKLEVSWSKFDASLSKLQGSQLN---CYKDMDDKHKTLRKQLSDYHAKILYCLDEL 324
            D++G L +   K      K    Q       K    K+K + + +      +    D L
Sbjct: 235 EDIEGTLAIEELKPPRQREKQAYEQWVVTLARKGAILKNKRVSRAIHAATTHLRKYFDAL 294

Query: 325 GLIC---AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLD 381
            +       +A++  L+K +   +E           K+F E            A +   +
Sbjct: 295 AINADARTKDALQY-LDKFVTGLQEAGFDETDEDLVKHFTE------------AKERLQE 341

Query: 382 FGFDYSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL 440
           +  D        Y + KL +L  + L ++ +     C++F +       +  ++++ P L
Sbjct: 342 YAADEK------YSNPKLDQLKYMILQAYEEKPDSRCLLFCKTRALTIALLTWMQEDPDL 395

Query: 441 THLTVAYLTGSTTSVDA---------LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
             L    L G+  S            +T   Q E+LE F  G   ++ +T V EEG+ + 
Sbjct: 396 RKLNPGRLVGAGASESTGGEQLVNHCMTQNQQVELLEMFTTGGNKIVISTSVAEEGIDIA 455

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER--GN-LKQR-NKLFDIIRSERSV 547
            C++V R+D        +Q+RGR R   S+ +L+  R  GN LK++ N + + +  +  +
Sbjct: 456 KCNFVFRYDYVGNEIGKVQTRGRGRAEGSKSVLIAGREGGNVLKEKLNTIREKLMEKAML 515

Query: 548 TDTALSRDPEACFLKACTYVKTKS 571
               + R+  A F+K    ++ +S
Sbjct: 516 QVWHMQREKHADFMKEVQRLQEES 539


>gi|431902875|gb|ELK09090.1| Putative ATP-dependent RNA helicase DDX58 [Pteropus alecto]
          Length = 929

 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 146/551 (26%), Positives = 248/551 (45%), Gaps = 66/551 (11%)

Query: 46  PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           PR YQL++   AK  +NTI    TG GKT +++++ +   Q     G K  ++F A  V 
Sbjct: 242 PRGYQLELALPAKNGKNTIICAPTGCGKTFVSLLICEHHLQKF-PQGQKGKVVFFAVQVP 300

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           +  QQ  V   + +    +  G  G    +    Q  I  ND++++TPQIL+++L+   +
Sbjct: 301 VYEQQKSVFSKYFERRGYKVSGISGATAENVSVEQI-IEDNDIIILTPQILVNSLKNGTV 359

Query: 165 -SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSS 218
            SL +   ++ DECH+ + +HPY  IM  +  +     SD+ P+V G+TAS  V    S+
Sbjct: 360 PSLSVFTLMIFDECHNTSKHHPYNMIMFNYLDQKLGGSSDSLPQVVGLTASVGVGDAKST 419

Query: 219 AMDCEGQISELESTLD-SQVFTIEDK-TEME--VFVPSA---KESCRFYDQSKFCGSDLK 271
               E  I +L ++LD S V T++D   E+E  V+ P     K   R  D+ K   S L 
Sbjct: 420 GEALE-YICKLCASLDISVVATVKDNLEELEEVVYKPQKFFRKVESRTTDRFKCIISQLM 478

Query: 272 GKLE-VSWSKFD-------ASLSKLQGSQLNCYK---------------DMDDKHKTLR- 307
            + E ++ S FD        + S++Q       K                M DK +  R 
Sbjct: 479 KETESLAKSIFDTLGTITLGNFSQIQNRNFGTQKYEQWIVAVQKKCMVLKMPDKDEESRI 538

Query: 308 -KQLSDYHAKILYCLDELGLICAYEAVKICLE--KVLKAQEECEIYRQSSLQCKYFLEEV 364
            K L  Y + +    D L +I  +  +K  L+  K          + ++        EE 
Sbjct: 539 CKALFLYTSHLRKFNDAL-IISEHARMKDALDYLKDFFRNVRTAGFDETEQDLTRRFEEK 597

Query: 365 LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI 424
           L  + S       I +D   +  K  DL ++  + + L         + +   I+FV+  
Sbjct: 598 LQELES-------ISMDPSNENPKLKDLCFVLQEEYHL---------NPETRTILFVKTR 641

Query: 425 IAAKVVERFVKKVPFLTHLTVAYLTGS--TTSVDALTPKVQKEVLESFR-GGKVNLLFAT 481
                +++++++ P L+ L    LTG   T     +T   QK+VL +F+  G   +L AT
Sbjct: 642 ALVDALKKWIEENPKLSFLKPGILTGRGRTKQNIGMTLPAQKDVLHTFKTSGDNKILIAT 701

Query: 482 DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDII 541
            V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+    ++ ++ K+   I
Sbjct: 702 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNSDVIEKEKI--NI 759

Query: 542 RSERSVTDTAL 552
             E+ + D+ L
Sbjct: 760 YKEKMMNDSIL 770


>gi|268536796|ref|XP_002633533.1| C. briggsae CBR-DRH-1 protein [Caenorhabditis briggsae]
          Length = 1043

 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 130/540 (24%), Positives = 237/540 (43%), Gaps = 71/540 (13%)

Query: 47  RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQL++ +VA R  NTI    TG+GKT+IA  +IK+  +    NG +   +F+ P   +
Sbjct: 294 RRYQLELCQVALRGENTIVTAPTGSGKTVIAANIIKNHFETRDRNGQRFKALFMTPNSMI 353

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD-------- 157
           + QQ D I  + D      Y  + V   D+   +  +   D++V TPQ++++        
Sbjct: 354 LKQQSDSISSYLDHS----YQVQIVQGADNLPVRNAVQTKDLIVATPQMIVNLCNEHRDV 409

Query: 158 -------ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK---------P 201
                   + + FLS   + F   DECH+   N PY  IM+E YH   N          P
Sbjct: 410 LKTENEIGIEQFFLSTFTIIF--FDECHNTMKNTPYANIMRE-YHTLKNMGNMPDGHHLP 466

Query: 202 KVFGMTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKT-EMEVFVPSAKESCRF 259
           ++ G+TAS     G  + +  +  I+ L + +D  ++ T+ + T E++ + P   +   +
Sbjct: 467 QIVGLTASLGTGDG-KNVLGVKEHIANLCAMMDVKELSTVRENTEELQNYSPIIPDQVSY 525

Query: 260 YDQS------KFCG--SDLKGKLE-VSWSKFDASLSKLQGSQLNCYKDM-DDKHKTLRKQ 309
            ++S      +F    SD+  ++E +  +  D     +Q  Q N    + DD+     + 
Sbjct: 526 CERSTDGAIGEFTKWLSDMMIEVENLIKTALDEENIPIQNVQQNVQNSLFDDRPYRPAEN 585

Query: 310 LS------DYHAKILYCLDELGLICA----YEAVKICLEKVLKAQEECEIYRQSSLQCKY 359
                   ++   + +  +++ L+C      +  KI + + L+  +EC  Y   S    +
Sbjct: 586 FQSAPNDKEHPGYLNWACNQMNLVCTAKFNRDGTKIIINEALEVLKEC--YWTLSYNVNF 643

Query: 360 FLEEVLHVIGSALPLADKIFLD-----FGFDYSKAVDLGYISTKLHELLQLFL--SFGKS 412
             E  L  + S L      F       +   ++  ++ G     + E ++ F+     + 
Sbjct: 644 NPEVALRYLKSELESRSANFTHHMSRIWERYHNHLLNSGTAENPMIEKVEQFIVDQNEQR 703

Query: 413 TQVLCIIFVERIIAAKVVERFVKKVPFLTHLT-----VAYLTGSTTSVDALTPKVQKEV- 466
                IIFV     A ++   + K   L  L      ++ L  ST+S   ++   QK++ 
Sbjct: 704 GDSRSIIFVRTRYEATILNEILNKRETLERLGIKSEWISGLNKSTSSSADISASKQKQME 763

Query: 467 -LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
            L  F  G++ +L AT V EEG+ V  C+ VI+++      +++Q RGR R  NS  +L+
Sbjct: 764 KLRKFATGEIRVLVATSVAEEGLDVAECNLVIKYNYATNEIAHVQRRGRGRAMNSTCVLV 823


>gi|291383111|ref|XP_002708086.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I
           [Oryctolagus cuniculus]
          Length = 926

 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 152/595 (25%), Positives = 259/595 (43%), Gaps = 91/595 (15%)

Query: 46  PRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           PR YQL++     K +NTI    TG GKT +++++ +   +     G K  ++F A  V 
Sbjct: 244 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKTF-PQGQKGKVVFFANHVP 302

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           +  QQ  V   + +       G  G    +    Q+ +  ND++V+TPQIL++ L+   +
Sbjct: 303 VYEQQKSVFSEYFERLGYSVAGIAGATVENVPV-QQIVENNDIIVLTPQILVNNLKDGTI 361

Query: 165 -SLDIVCFIVIDECHHATGNHPYTKIMKEFYH-------KSDNKPKVFGMTASPVVRKGV 216
            SL +   ++ DECH+    HPY KIM  FY+        SD  P+V GMTAS     GV
Sbjct: 362 PSLSVFTLMIFDECHNTCKQHPYNKIM--FYYLDQKLGGSSDPLPQVVGMTASV----GV 415

Query: 217 SSAMDCEGQ---ISELESTLDSQVFTI--EDKTEME--VFVP---SAKESCRFYDQSKFC 266
             A + +     I +L ++LD+ V     E+  E++  V+ P   S +   R  +  K  
Sbjct: 416 GDAKNTDEAVEYICKLCASLDASVIATVKENLEELQEIVYTPQKISRRVESRTTNGFKRI 475

Query: 267 GSDLKGKLE-VSWSKFD--ASLSKLQGSQLNCYKD---MDDKHKTLRK-QLSDYHAKILY 319
            S L  + E ++   F+   +LS++Q  +    K    + + HK  R  QL D       
Sbjct: 476 ISQLMRETESLAKDVFEELENLSQIQNREFGTQKYEQWIVEVHKACRTFQLPDK------ 529

Query: 320 CLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
             DE   IC  +A+ +    + K  +   I   + ++              AL   +  F
Sbjct: 530 --DEESRIC--KALYLYTSHLRKYNDALIISEHAQMK-------------DALNYLNNFF 572

Query: 380 LDF---GFDYSKAVDLGYISTKLHEL----------------LQLFLS--FGKSTQVLCI 418
            D    GFD ++         K+ EL                L L L   +  + +   I
Sbjct: 573 KDVRAAGFDETEQDLTRRFEGKVQELETVSMDPSNENPKLKDLYLILQEEYHVNPETKTI 632

Query: 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFR-GGKV 475
           +FV+       +++++++   L+ L    LT  G T+    +T   QK VL++FR  G  
Sbjct: 633 LFVKTRALVDAIKKWIEENSKLSFLKPGILTGRGKTSQTTGMTLPAQKCVLDAFRSNGDH 692

Query: 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRN 535
           N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+ +L+    ++ ++ 
Sbjct: 693 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAKGSKCLLLTSNADVIEKE 752

Query: 536 KLFDIIRSERSVTDTALSRDPEACFLKACTYVK-TKSYIVESTGASVTTDSSVNL 589
            +   +  E+ + ++ L        L+ C   K  K  +   TG  +  D+  N 
Sbjct: 753 NIN--MYKEKMMNESILR-------LQTCDEAKFKKKLLCIQTGEKIIRDNQQNF 798


>gi|302687578|ref|XP_003033469.1| hypothetical protein SCHCODRAFT_37756 [Schizophyllum commune H4-8]
 gi|300107163|gb|EFI98566.1| hypothetical protein SCHCODRAFT_37756, partial [Schizophyllum
           commune H4-8]
          Length = 1343

 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 107/211 (50%), Gaps = 30/211 (14%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ ++ E +  RN I  L+TG+GKT IAV+ +K   +  ++N   K+  F APTV L 
Sbjct: 1   RSYQQEMLEQSLHRNIIIALDTGSGKTHIAVLRLKHEMER-RTN---KISWFFAPTVGLC 56

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEW-DSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            QQ  VI+      V    GA   D+W D+  W + +  + +++ TPQ+LLDALR  +++
Sbjct: 57  EQQRSVIQRSLPVPVGLISGALEPDQWKDAALWMRVLRDHKIMISTPQVLLDALRHGYIN 116

Query: 166 LDI-VCFIVIDECHHATGNHPYTKIMKEFYHKSDN------------------KPKVFGM 206
           L   +  +V DE HHA  NHPY ++M EFY                       +P V G+
Sbjct: 117 LGRDISLLVFDEAHHAVDNHPYNRVMLEFYRPLATVPVNVESQIAPGKVVPLCRPAVLGL 176

Query: 207 TASPVVRKGVSSAMDCEGQISELESTLDSQV 237
           TASP+         + E     +ES LD+ +
Sbjct: 177 TASPIF------GGNTEKAFRTIESNLDATI 201



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 30/259 (11%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDS 1086
            LLPS ++ LE       L+E +   +    +P SL+  A+T     E  + +RLE +GD+
Sbjct: 924  LLPSTLRALEVTTTVDSLKEHLFASTPMESVPQSLMSVAMTAPVSQEPVNYQRLETMGDT 983

Query: 1087 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKL-QGYIRDSAFDPRRWV 1145
            VLKY VS  L+  YP  HEG L+ ++   V N  L K+   R + Q  IR+         
Sbjct: 984  VLKYLVSIQLYAEYPLWHEGYLAKQKDHTVSNVRLAKISVRRHIFQWIIREKNK------ 1037

Query: 1146 APGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALI 1205
                        +   D  ++   G      +++++ K             +AD  E+LI
Sbjct: 1038 ---------PKKKKKKDNNQLSTKGTVLKITSELLLTK----------LSVLADVIESLI 1078

Query: 1206 GAYYVGGGLIAALYMMKW--LGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGY 1263
            GA YV GGL       ++  LG+  D   + +   ++R       P   E++ +E  +GY
Sbjct: 1079 GAAYVHGGLSLGRACAQFFDLGLKWDTTSARISTILSRTVTLDQYP--AELQYVERMLGY 1136

Query: 1264 EFTVKFLLQEAITHASVQE 1282
             F  K LL EA+THAS QE
Sbjct: 1137 TFERKALLIEALTHASYQE 1155



 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 136/314 (43%), Gaps = 41/314 (13%)

Query: 396 STKLHELLQLFLSFGKSTQVLC-----IIFVERIIAAKVVERFVKKVPFL-THLTVAYLT 449
           + K+H L+   LS     +        ++FVER  +   +   +K  P      +V  L 
Sbjct: 374 TEKVHALVNTLLSEKAEAEAANEAFSALVFVERRDSVFALAELLKNHPVAGREFSVGNLV 433

Query: 450 GSTTSVD---------ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
           G++ S            L  +   E LE FR G  N++ +T V EEG+ +  C  V+R+D
Sbjct: 434 GTSESTHRHSFLDITRVLLDQKLDETLEDFRLGTKNVIVSTSVAEEGIDIQACGCVVRWD 493

Query: 501 LPKTVSSYIQSRGRARQHNSQFILML--ERGNLKQRNKLFDIIRS--ERSVTDTALSRDP 556
            P  ++S++QSRGRAR+  S F+ +   E G+ K  N+   + +   +R    T +  + 
Sbjct: 494 PPPNMASWVQSRGRARRKRSVFVSLFSTEGGHRKDVNEWERLEKEMVDRYTDPTRVQYNQ 553

Query: 557 EACFLKACTYVKTKS--YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA 614
           +A + +       +   Y   +TGA +T  S++  +  +C M+P   +   +PI+     
Sbjct: 554 DAGWGEDGEDEDEEELIYTNPTTGAKITLQSALPHLEHFCAMIPFSAHTDNRPIYDVDPP 613

Query: 615 E------EAYECELTLPSNAPFQTIVGPT-----SRNKNLSKQL---------VCLEACE 654
           E      E    E+ LP+     T+  P       R+  + ++          V   A  
Sbjct: 614 EMPPGWHENTRVEVPLPTGPFGATVTLPRVVPLEVRSFTVPREFSTKISAFRHVAFVAYT 673

Query: 655 KLHQVGALNDHLLP 668
            LH+ G LNDH LP
Sbjct: 674 TLHKCGLLNDHFLP 687


>gi|367035818|ref|XP_003667191.1| hypothetical protein MYCTH_2312762 [Myceliophthora thermophila ATCC
           42464]
 gi|347014464|gb|AEO61946.1| hypothetical protein MYCTH_2312762 [Myceliophthora thermophila ATCC
           42464]
          Length = 1475

 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 28/228 (12%)

Query: 24  GSSGHDHAVDGPSSSTNS---------INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTM 74
           G++ H   +D   SS +S         +    R YQL++ E + ++N I  ++TG+GKT 
Sbjct: 50  GNASHTTGLDSVHSSRSSTPDQEPPRTVTMTARAYQLEMLEESLKKNVIVAMDTGSGKTQ 109

Query: 75  IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEW 133
           +A+M I    QA    G  K+  FLAPTV L  QQ++ IR      +     G+  V+ W
Sbjct: 110 VAIMRI----QAELERG-DKIAWFLAPTVSLAEQQFETIRAQIPGVQSRLILGSDNVEAW 164

Query: 134 DSQ--CWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMK 191
            S+   W   +    ++V T QIL DA+  A + L  +  IV+DE HH+ GN+P  ++M+
Sbjct: 165 SSKPGVWDAVLFNTRIIVSTYQILFDAVTHALVPLASLGIIVVDEAHHSKGNNPVARLMR 224

Query: 192 EFYHKSDNK----PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS 235
           E Y  +  +    P + G+TASP++   ++        +  LE TLD+
Sbjct: 225 EHYVPNKARGLPVPHILGLTASPLMTSNLND-------LEVLERTLDA 265



 Score = 80.9 bits (198), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 92/212 (43%), Gaps = 47/212 (22%)

Query: 1078 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1137
            ER+E LGD++LK+  + +    YP   EG LS  +   V NS L     D  L  YI   
Sbjct: 1018 ERVEFLGDAILKFCTAVNCSANYPIHPEGFLSRLKDKIVSNSRLFHAAVDFGLDRYIIHK 1077

Query: 1138 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTI 1197
             F   +W        RP   E   D LE P                P +   R + +KT+
Sbjct: 1078 TFTMHKW--------RPAYVE---DLLENP----------------PSETETRRLSTKTL 1110

Query: 1198 ADCAEALIGAYYVGGGLIAALYMM-------KWLGIDADLEV---SLVDDCITRASLRSY 1247
            AD  EALIGA Y+ GG   AL  M       +W  I+   EV      DD    A++RS 
Sbjct: 1111 ADVVEALIGASYISGGTPKALACMSLFLPEFEWHSIEHCREVLYNQAPDDEPLPATMRS- 1169

Query: 1248 VPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
                     +ES +GY FT + LL EA+TH S
Sbjct: 1170 ---------LESLLGYTFTKRSLLVEAMTHPS 1192



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 53/309 (17%)

Query: 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH-------LTVAY 447
           +S K+H LL    S   +   + IIFV+   +  V+   +   P  +        +  + 
Sbjct: 427 LSPKVHALLDALESHEGNP--IGIIFVKERASVAVLSHILAVHPKTSRRYRVGSMVGTSR 484

Query: 448 LTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
           + G    +  L+ K     L++FR G +NLL AT V+EEG+ VP C+ VI FD    + S
Sbjct: 485 VPGRRRDILDLSQKDYLLALQAFRKGAINLLVATSVLEEGIDVPACNLVICFDKLDNLKS 544

Query: 508 YIQSRGRARQHNSQFILMLE-------------RGNLKQRNKLFDIIRSERSVTDTALSR 554
           +IQ RGRAR   S   L++E              G +K+  K  D +R  + +     S 
Sbjct: 545 FIQRRGRARMSASHLYLLVEDESDPSSRQWQNLEGEMKR--KYEDDMRENKRLEQIEDSD 602

Query: 555 DPEACFLKACTYVKTKSYIVESTGASVTT-DSSVNLIHRYCEMLPSDKYYTPKPIFKYKS 613
           D +   L+              TGA +T  D+  +L H +C  L + KY    P +    
Sbjct: 603 DLDYPILRD-----------RETGAQITILDAKAHLEH-FCATLSTRKYVDWSPFYVVHD 650

Query: 614 AE----EAYECELT-----LP-SNAP----FQTIVGPTSRNKNLSKQLVCLEACEKLHQV 659
            E    +A +  L      LP S AP    F+++    S  K         +A  KL++V
Sbjct: 651 LEGNPVDARQPGLRKATVHLPVSLAPELRTFESLHAWRSEAKACRD--AAFQAYAKLYEV 708

Query: 660 GALNDHLLP 668
           G +N ++LP
Sbjct: 709 GLVNRNMLP 717


>gi|449267492|gb|EMC78435.1| putative ATP-dependent RNA helicase DHX58 [Columba livia]
          Length = 674

 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 139/527 (26%), Positives = 234/527 (44%), Gaps = 98/527 (18%)

Query: 47  RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +    A R  N+I  L TGAGKT  AV + +   Q ++S    ++ + L   VHL
Sbjct: 4   RGYQREAVTPALRGHNSIVWLPTGAGKTRAAVYVCR---QHLESRRGGRVAV-LVNKVHL 59

Query: 106 VHQ----QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL-- 159
           V Q    +++V++   DF V    G    D  +   +   + ++D+++ T QIL +AL  
Sbjct: 60  VEQHAKKEFNVLQ--KDFRVTAISG----DRSEKSFFASVVKQSDIVICTAQILQNALVS 113

Query: 160 --RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK----SDNKPKVFGMTASPVVR 213
                 + L     +VIDECHH      Y KIM  +  +      + P+V G+TASP   
Sbjct: 114 GEEDTHVELTDFSLLVIDECHHTHKEAVYNKIMLSYLQRKLCGQQDLPQVLGLTASP--- 170

Query: 214 KGVSSAMDCEG---QISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQSKFCGS 268
            G   A   EG    I ++ + LD++  T   E+  ++++ VP  ++    YD    C  
Sbjct: 171 -GTGGATSFEGAVEHILQICANLDTEKITSAQEEVEQLQIHVPQPRKQ---YD---LCQ- 222

Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
                 E +   F   L K+  +Q+  Y +M     TL +   D+  +I           
Sbjct: 223 ------ERAQDPFGERLKKVM-AQIQQYMEM----PTLPR---DFGTQI----------- 257

Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKI---------- 378
            YE   + +EK   A+  C   R  +L  + + + +L  I   + + D            
Sbjct: 258 -YEQRIVEVEK-RAAETFCRKTRVCALHLRKYNDALL--INDTVRMIDAFQCLQQFYATE 313

Query: 379 ---------FLDFGFDYSK------AVDLGYISTKLHELLQLFLS-FGKSTQVLCIIFVE 422
                    FL   F+ ++      A D  Y + +L +L Q+    F        I+F +
Sbjct: 314 RDTKDPTEQFLAATFEENRTSLQAFARDQRYENPRLGKLEQILQEHFQPHGTSRGIVFTK 373

Query: 423 RIIAAKVVERFVKKVPFLT--HLTVAYLTGS--TTSVDALTPKVQKEVLESFRGGKVNLL 478
              +A  +  +++    L   H+  A LTG+  +     +T   Q++V++ FR G +NLL
Sbjct: 374 TRQSAHSLLSWLQDTAALRGEHIRAAVLTGAGYSNQTRHMTQNEQQDVIKLFREGALNLL 433

Query: 479 FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           F+T V EEG+ +P C+ V+R+ L     + +Q+RGRAR  NS + ++
Sbjct: 434 FSTSVAEEGLDIPECNIVVRYGLMTNEIAMVQARGRARAENSVYSVL 480


>gi|146180696|ref|XP_001470932.1| conserved hypothetical protein [Tetrahymena thermophila]
 gi|146144409|gb|EDK31487.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
          Length = 1822

 Score =  114 bits (286), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 119/233 (51%), Gaps = 44/233 (18%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ ++F+ +  +N+I  LETGAGKTMIA MLI    Q  K    KK IIFLA TV LV
Sbjct: 106 RNYQKELFKNSYSKNSIIYLETGAGKTMIATMLINYFFQKQKKAPQKKKIIFLANTVQLV 165

Query: 107 HQQYDVIR---------VHTD------------------FEVEEY-------YGAKG--- 129
            QQY  I+         +  D                  FE E +       Y  K    
Sbjct: 166 KQQYAEIKNNLQRISEMMENDKEISQILKFQEGINYRRIFEKENHIVKCHGSYKQKDNLQ 225

Query: 130 VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189
           ++ +  Q W   +   ++ VM  Q+LL+ LR+ ++ ++ +  I+ DECHH   +HPY  I
Sbjct: 226 IETFTKQKWDYLLENYEIFVMIGQVLLNGLRRGYIRIEDIEVIIYDECHHTRQDHPYCLI 285

Query: 190 MKEFY--HKSDNK----PKVFGMTASPVVRKGVSSAMDC-EGQISELESTLDS 235
             EFY  HK  N+    PK++G+TASPV+   V S  +  + +ISEL + LD+
Sbjct: 286 QYEFYHFHKRRNEQVQLPKIYGLTASPVLDIEVKSDSNIMKKKISELCTNLDA 338



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
           Q E +E+FR  ++ ++ +T V EEG  +P+C+ VI F+    + S++Q +GRAR+ NS+F
Sbjct: 686 QSENIEAFRKKELQIILSTSVTEEGFDIPSCNLVISFNKISNLKSFVQIKGRARKENSKF 745

Query: 523 ILMLERGNLKQR-----NKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVEST 577
           I+M +    KQ          D+I+  + +      ++ E         VK      + T
Sbjct: 746 IIMAKDKYQKQDYETDIESYKDLIQQIKEIAPKVEKQEIEIRPNYKYKIVKLTFNKNQET 805

Query: 578 GASVTTDSSVNLIHRYC-EMLPSDKYYTPKPIFKY-KSAEEAYECELTLPSNAPFQTIVG 635
           GA + T+ SVNL H Y  ++L S       P + Y +     + C++ +PS +  +T   
Sbjct: 806 GAILNTNWSVNLFHTYANQLLYSYDSNIKGPFYYYIEITNVGFICQIIVPSQSGLKTFCS 865

Query: 636 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESL 686
                K  +K+  C +A   L++   + D +  S  E SE+    +K+E L
Sbjct: 866 NPQAQKEDAKKDACFQAVIILYRQYKIFDQIQNSQSEKSESLFEDEKDEKL 916



 Score = 48.5 bits (114), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 1055 FHIPSSLILEALTTLGCC---ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            F +  S ++++LT+L      +  S+ER E LGD+VLK   S  ++  +PK  E  L   
Sbjct: 1417 FELQISELMKSLTSLEYAVNNKESSLERYEFLGDTVLKCLSSTQIYFEHPKSMEDHLHVH 1476

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFD 1140
            R+  + N  L ++   +K+  YI  S  +
Sbjct: 1477 RTIIIQNRNLAQIAVKKKIFKYILSSKIE 1505


>gi|158706443|sp|Q0CEI2.2|DCL2_ASPTN RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease dcl2; Includes: RecName:
           Full=ATP-dependent helicase dcl2
          Length = 1377

 Score =  114 bits (285), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 98/178 (55%), Gaps = 11/178 (6%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F PR YQ ++FE + + N I  ++TG+GKT +A++ I +    +++   +KLI FLAPTV
Sbjct: 14  FCPRNYQTEMFEASLQENIIVAMDTGSGKTHVALLRIMN---ELETRRPQKLIWFLAPTV 70

Query: 104 HLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQILLDALRK 161
            L  QQ+DVI  +    +     G   V+ W  Q  W   +    V+V T  +L DA+  
Sbjct: 71  ALCFQQHDVITKNLPAVKSRTLTGQDKVELWTEQAIWDAILKDMQVVVSTHAVLADAMSN 130

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS------DNKPKVFGMTASPVVR 213
            F+ +  +  ++ DE HH    HP  +IM++FYH +      D  P + G+TASPVVR
Sbjct: 131 GFVRVSQLGLLIFDEAHHCMRRHPANRIMQDFYHPTLVKQGPDAVPGILGLTASPVVR 188



 Score =  113 bits (282), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 120/231 (51%), Gaps = 25/231 (10%)

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
           L+ ++Q++ L  FR G+ NL+ ATDV+EEG+ +  CS VI +D P  V S++Q RGRAR+
Sbjct: 434 LSMQMQRDTLSEFRSGQKNLIVATDVLEEGIDISACSVVICYDKPANVKSFVQRRGRARR 493

Query: 518 HNSQFILML----ERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYI 573
             S F ++     E  +L++   L + +    +  D    R  EA  L+    V T+ + 
Sbjct: 494 KESTFAILFSTDDELCDLRKWQLLEEAMIE--AYQDDERKR-CEALALETMAEVVTERFE 550

Query: 574 VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQ-- 631
           VESTGA +T D++V  +H +C +LP   Y   +P       E ++E + T      F+  
Sbjct: 551 VESTGAVLTADTAVARLHHFCSILPQQPYVDNRP-------ELSFEYDGTGRRRGTFKLP 603

Query: 632 TIVGPTSR---------NKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEP 673
           + V P  R          +  + +    + C++L++ G LNDHLLP   +P
Sbjct: 604 SCVHPDVRRTRGEKWWTTERAATKEAAFQTCKRLYEFGLLNDHLLPLTRKP 654



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 124/280 (44%), Gaps = 44/280 (15%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSL-ILEALTTLGCCESFSMERLELLGD 1085
             + +++ RLE+ ++A++L E I    ++    S+  ++ A++          +R E  GD
Sbjct: 902  FISAILDRLEATLIATRLCETI---LQDVQFSSTRHVITAISAPTAQSPTDYQRYEFFGD 958

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV 1145
            SVLK+ VSC L++ +P   EG LS  R   V N+ L +   D  L  +I    F PR+W 
Sbjct: 959  SVLKFTVSCQLYMQHPNWPEGYLSEGRDEIVQNNRLARAALDVGLDAFILTRRFTPRKWT 1018

Query: 1146 APGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALI 1205
            AP                          ++    V GK      R + SK +AD  E+LI
Sbjct: 1019 AP------------------------LISEKAVEVAGK------RPLSSKVLADVVESLI 1048

Query: 1206 GAYYVGGGLIAALYMMKWLGIDADLEVSLVDDC-ITRASLRSYVPRINEIKDIESKIGYE 1264
            GA Y+ GG   A   ++ L       +  ++ C IT   +    P +     ++  +GY 
Sbjct: 1049 GAAYMDGGQAKAHTCIRRL-------LPEIEICPITPPPVHESAPHVMN-DSLKQHLGYT 1100

Query: 1265 FTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQI 1304
            F  + LL EA+TH S +     Q+ Y+ L+     +L  +
Sbjct: 1101 FVNEALLVEALTHPSCRSDASTQS-YQRLEFLGDAVLDMV 1139


>gi|407917735|gb|EKG11039.1| Ribonuclease III [Macrophomina phaseolina MS6]
          Length = 1216

 Score =  114 bits (284), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 187/397 (47%), Gaps = 39/397 (9%)

Query: 301 DKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYF 360
           ++   + +QL   +++ +   ++LG       ++ C+     A+ E  +   S L   + 
Sbjct: 2   NRKTYIHEQLKKVYSRAIGIYNDLGGAATEFYIRSCI-----ARFEAFLTSSSHLLADWS 56

Query: 361 LEE------VLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQ 414
           +EE      +L ++ ++ P+  K  L              +S K+  L+ L L+  +   
Sbjct: 57  VEEGDKLRDMLSLVAASQPVNQKDILHQN-----------LSPKMQYLIDLLLAEWREG- 104

Query: 415 VLCIIFVERIIAAKVVERFVKKVPFLTHL-TVAYLTGSTTSV---------DALTPKVQK 464
              I+FVE+      ++  +   P L  L  +    G++ +V         D +  + Q+
Sbjct: 105 FTGIVFVEQRATVAAMDHVLSNHPQLRDLFNIGTFVGTSVTVRRKSHLGIGDLVEVRHQQ 164

Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFIL 524
           + L+ FR GK NL+ AT V+EEG+ V NC  VI F+ PK + S+IQ RGRAR+ +S+F++
Sbjct: 165 QTLDEFRDGKKNLIVATSVLEEGIDVSNCHIVICFEPPKNLKSFIQRRGRARKQDSKFVI 224

Query: 525 ML-ERGNLKQR-NKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVT 582
           ML +  +L Q  +K  D+    +      L +   A   +         Y  ESTGA +T
Sbjct: 225 MLSDDSSLAQSPDKWLDLEEQMKKAYLNDLRQIQAAEAREQIEEGGDAIYRCESTGALLT 284

Query: 583 TDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE-EAYECELTLPS--NAPFQTIVGPTSR 639
            ++++  ++ +C +L   ++   +P F +   E +     +TLP+  NA  +   G  + 
Sbjct: 285 LENAMQHLYHFCAILGGGQHVDLRPRFSFMVDENDLTTAVVTLPTSVNAKLRQHRGKGAW 344

Query: 640 -NKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSE 675
             +  +++    +A   LH+ G +ND+LLP + +P E
Sbjct: 345 LTERAARRDAAFQAYVALHKAGLVNDNLLPLLSDPEE 381



 Score = 74.3 bits (181), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 134/324 (41%), Gaps = 57/324 (17%)

Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPS-SLILEA 1065
            +P +  V    P S  K    +PS++ R E  M+  +L    N   ++    +  ++L A
Sbjct: 615  LPAKDFVIDGSPASYAKFAAFIPSIIHRYELFMIVQEL---CNTAIKDVDFENYEMVLRA 671

Query: 1066 LTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG 1125
            +T     E+   +RLE LGD +LK+  +  L        E  L+ ++   V N +L K  
Sbjct: 672  ITASSTNEN-DYQRLEFLGDCILKFNTAVQLMAGNLHWPESYLTEKKDRVVSNGSLAKAS 730

Query: 1126 TDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPC 1185
                L  +I   AF   +W        R V     +  +E+P                  
Sbjct: 731  RRAGLDRFIITRAFTGAKWRP------RYVNDVLALAAIELP------------------ 766

Query: 1186 DMGHRWMGSKTIADCAEALIGAYYVGGGLIAA-------LYMMKWLGIDAD---LEVSLV 1235
                R + SKT+AD  E+LIGA Y+ GG+  A       L  + W  +D     L     
Sbjct: 767  --EKRDLSSKTLADVVESLIGAAYIEGGMPKANLCIATLLPKLSWCPLDESRHILAKHAA 824

Query: 1236 DDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNL----YK 1291
            +D I+        P I+ ++  E  IGY F  K+LL EA+TH S   F  Y++     Y+
Sbjct: 825  EDHIS-------APPIH-LERAEELIGYTFKNKYLLLEALTHPS---FTSYRDATTSSYQ 873

Query: 1292 HLQHCSTLLLSQ-ITEYVKSFPKP 1314
             L+     +L   I+  + ++ KP
Sbjct: 874  RLEFLGDAVLDYLISRRLHAYRKP 897


>gi|301106827|ref|XP_002902496.1| dicer-like, putative [Phytophthora infestans T30-4]
 gi|262098370|gb|EEY56422.1| dicer-like, putative [Phytophthora infestans T30-4]
          Length = 717

 Score =  114 bits (284), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 7/165 (4%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R +Q +V E+A+ +N + V +TG GKT +A+ L+ +   +     F     F+APT  LV
Sbjct: 7   RAFQREVLELAREKNVVMVGDTGIGKTFLAIALLSEQDYSGDKRAF-----FMAPTRQLV 61

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            Q    IR  +   V  Y G +  D WD+  W++E+    V V TP+I+ + L K ++SL
Sbjct: 62  VQITAKIRQTSTLRVNSYCG-RTADLWDATQWERELQLTRVFVCTPEIVRNVLLKGYVSL 120

Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHK-SDNKPKVFGMTASP 210
             +  +V DECHH T  HPY +++K F  + S   P++FG TA P
Sbjct: 121 SRMNLLVFDECHHVTKRHPYAQVIKMFNQENSACMPRIFGTTACP 165



 Score = 60.5 bits (145), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 14/213 (6%)

Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
           L+ F  G + +L +T V  EG+  P C  +I  D   T    +Q +GRAR  +     + 
Sbjct: 479 LKKFESGSIRVLVSTAVSVEGVDFPQCGLIIVMDRVGTARKLMQLKGRARHEDGVVYYLA 538

Query: 527 ERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTK-------SYIVESTGA 579
           E G+L        + R    +     SR+      +    +  +          +ESTGA
Sbjct: 539 EEGDLGHEVYYKQLTREVEVIDQLEFSREKVETIQQQPRSIAAEMMGAGVHKIEIESTGA 598

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAY------ECELTLPSNAPFQTI 633
            +  DSS+  I+++C+ LP+ + +T      Y   E  Y        EL LP     +T 
Sbjct: 599 VLDLDSSITCINQFCQSLPT-RLFTVDAKRLYTITEARYGGKSMFTAELNLPMELELETF 657

Query: 634 VGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL 666
                 +K  ++      AC+KL +   ++D L
Sbjct: 658 RSDPMPSKASARASAAFSACQKLLEQQLIDDSL 690


>gi|255970532|gb|ACU45742.1| dicer-like protein 1, partial [Sporothrix schenckii]
          Length = 1021

 Score =  114 bits (284), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 137/287 (47%), Gaps = 22/287 (7%)

Query: 398 KLHE-LLQLFLSF-GKSTQVLCIIFVERIIAAKVVERFVK----KVPFLTHLTVAYLTGS 451
           +LH+ L  +F  F G+ T+  CI+FVE+   A ++    +    K+P L   T   + G 
Sbjct: 143 RLHDALFDVFTRFSGQKTR--CIVFVEQRYTATLLADLFQQEQMKIPNLR--TGVLVGGG 198

Query: 452 TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
           +  +   T + Q   +  F+ G+VN LFAT + EEG+ +P         L  T+  YIQS
Sbjct: 199 SKDMGKNTFRTQLLTISKFKRGQVNCLFATSIAEEGLDIPGLQPCHPLRLYGTMIQYIQS 258

Query: 512 RGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTD--TALSRDPEA--------CFL 561
           RGRAR   S +I M E GN+  R  L +   SE  + D   AL  + +          FL
Sbjct: 259 RGRARHQESTYIHMAELGNVDHRRLLAENKASENKMRDFCNALPENRKLEGNDNDMDYFL 318

Query: 562 KACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECE 621
           +  T    + Y+V ST A +T  SS+ ++ +Y   LP      PKP +      + + CE
Sbjct: 319 RDET--DQQVYVVPSTQAKLTYRSSLVILAQYVSTLPEPSEGVPKPEYSVFCTADGFVCE 376

Query: 622 LTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
           + LPS++P +   G     K ++K       C KL++   ++ HL P
Sbjct: 377 VVLPSSSPIRQATGRPHSRKQVAKCAAAFAMCLKLYEKKYIDKHLHP 423



 Score = 77.0 bits (188), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 128/317 (40%), Gaps = 60/317 (18%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTT-------L 1069
            +P+  +  ++ LP ++ R+ES ++A +    I   S    I   L LEA T         
Sbjct: 721  IPVDSIAMIFNLPPIIHRIESTLIALEAAAVIGLPS----IYPGLALEACTKDCDVSDDA 776

Query: 1070 GCCESF---------SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            G  E+          + ERLELLGDS LK A +  L+   P K+E +    R   +CN  
Sbjct: 777  GATETAINFQAGMGRNYERLELLGDSFLKMASTIALYTLAPDKNEFEYHVERMCMICNKN 836

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L     +  L+ YIR   FD R W  P       +  E    T     +GK  T    ++
Sbjct: 837  LFNNALEIGLEEYIRSKEFD-RAWYPPVVDETVKLAAEAAAKTGTPDENGKTPTALHGLI 895

Query: 1181 V--GKPCDMG-HRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDD 1237
            +  G+    G +  +  K+IAD  EA+IGA           Y+  +   D DL V  V  
Sbjct: 896  LKKGRKQQEGSYHALSDKSIADVCEAMIGA----------AYLTTYEERDFDLAVQAVS- 944

Query: 1238 CITRAS---LRSY------------------VPRINEIKDIESKIGYEFTVKFLLQEAIT 1276
             + ++    +R+Y                    +++  K +   +GY FT   LL+ A+ 
Sbjct: 945  VVAKSKFHPMRTYKEYFAAYVLPEWQIAPATAAQVHMAKAVARDVGYTFTYPRLLRCAVM 1004

Query: 1277 HASVQEFY----CYQNL 1289
            H S    Y     YQ L
Sbjct: 1005 HPSYPRVYEQLPSYQRL 1021


>gi|194224905|ref|XP_001497895.2| PREDICTED: probable ATP-dependent RNA helicase DDX58 [Equus
           caballus]
          Length = 920

 Score =  114 bits (284), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 153/596 (25%), Positives = 268/596 (44%), Gaps = 72/596 (12%)

Query: 47  RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQL++   AK  +NTI    TG GKT++++++ +   +     G K  ++F A  + L
Sbjct: 239 RNYQLELALPAKEGKNTIICAPTGCGKTLVSLLICEHHLKKF-PQGRKGKVVFFAIHLPL 297

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL- 164
             QQ  V   + +    +  G  G    ++    + +  ND++++TPQIL+++L+   + 
Sbjct: 298 YEQQKSVFSQYFERRGYKVAGISGATS-ENVVVDQIVENNDIIILTPQILVNSLKDGTIP 356

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVV--RKGVS 217
           SL +   ++ DECH+ + +HPY  IM  +  +     SD  P+V G+TAS  V   K   
Sbjct: 357 SLSVFTLMMFDECHNTSKHHPYNMIMFNYLDQKLGGSSDPLPQVVGLTASVGVGDAKNRD 416

Query: 218 SAMDCEGQISELESTLDSQVFT-----IEDKTEMEVFVPSA---KESCRFYDQSKFCGSD 269
            AM+    I +L ++LD+ V +     +++ TE+ V+ P     K   R  D  K   S 
Sbjct: 417 EAME---HICKLCASLDASVISTVKDNLQELTEV-VYKPEKNFRKVESRTTDGFKCIISQ 472

Query: 270 LKGKLE-VSWSKFD--ASLSKLQGSQLNCYK---------------DMDDKHKTLR--KQ 309
           L  + E ++ S FD   +LS+ Q       K                + DK +  R  K 
Sbjct: 473 LMRETESLAKSIFDELENLSRFQNRDFGTQKYEQWIIAVQKACIVFQLPDKAEESRICKA 532

Query: 310 LSDYHAKILYCLDELGLICAYEAVKICLE--KVLKAQEECEIYRQSSLQCKYFLEEVLHV 367
           L  Y + +    D L +I  +  +K  L+  K          + ++        EE    
Sbjct: 533 LYLYTSHLRKYNDAL-IISEHARMKDALDYLKDFFNNVRAAGFDETEQDLTRRFEE---- 587

Query: 368 IGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAA 427
               LP  + + +D   +  K  DL +I  + + L         + +   I+FV+     
Sbjct: 588 ---KLPELESVSMDPSNENPKLKDLCFILQEEYHL---------NPETRTILFVKTRALV 635

Query: 428 KVVERFVKKVPFLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFR-GGKVNLLFATDVI 484
             +++++++ P L+ L    LT  G TT+   +T   QK  L++FR  G   +L AT V 
Sbjct: 636 DALKKWIEENPKLSFLKPGILTGRGKTTNNTGMTLPAQKCALDAFRTNGDNKILIATSVA 695

Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSE 544
           +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+    ++ ++ K+   +  E
Sbjct: 696 DEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAKGSKCFLLTSNADVIEKEKMN--MYKE 753

Query: 545 RSVTDTALSRDP--EACFL-KACTYVKTKSYIVESTGAS--VTTDSSVNLIHRYCE 595
           + + D+ LS     EA F  K C     +  I +S G +  V    +  L+ R C+
Sbjct: 754 KMMNDSILSLQAWDEAIFKEKVCQIQIHEKSIRDSQGKAKPVLDKKNKKLLCRKCK 809


>gi|350855011|emb|CAZ36047.2| dicer-1, putative [Schistosoma mansoni]
          Length = 2319

 Score =  113 bits (283), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 143/316 (45%), Gaps = 64/316 (20%)

Query: 1028 LPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESF-SMERLELLGDS 1086
            L S++Q  + + L S  +   +   R +    + IL+ALT + C   F ++ER+E +GDS
Sbjct: 1717 LESLLQETKVIELNSNEKPSNDIRKRAYQPGPTTILQALT-MSCSNDFINLERMETIGDS 1775

Query: 1087 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWV 1145
             LK+ V+ HL+LTYP+ HEG+LS  RS  VCNS L++LG  + LQ  +    F+P   W+
Sbjct: 1776 FLKFVVTVHLYLTYPEAHEGKLSHLRSRIVCNSNLYRLGKAKDLQNRMIGCKFEPHENWI 1835

Query: 1146 APGQLSLRPVPCECGV---------------DTL---EVPLDGKFFTQ------------ 1175
             PG    +       +               DTL   EV  +  F  +            
Sbjct: 1836 PPGYYVRQDKRLNNEIIKKFESNRNLVIWSTDTLMDDEVLRNIDFIDENKIKPIENFPIS 1895

Query: 1176 -----DTKVVVGKPCDMGH-----RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLG 1225
                 D KV+  +  +  +     + +  K+IADC EALIG Y    G  +AL +M+W G
Sbjct: 1896 EWDPNDPKVLHAQHLNNQYLITIQQAIPDKSIADCVEALIGCYLTTRGERSALRLMQWFG 1955

Query: 1226 ID-----------ADLEVSL-----VDDCITRASLRS--YVPRINEIKDIESKIGYEFTV 1267
            ID           A    SL     +D    RA+L     V R +E   +ES + Y F  
Sbjct: 1956 IDCLHKSDNSQPTARAPWSLPKSNYLDTDENRANLNEARLVWRFDE---LESSLNYTFKD 2012

Query: 1268 KFLLQEAITHASVQEF 1283
              LL +A TH S  + 
Sbjct: 2013 PSLLIQAFTHPSYHQL 2028



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIEL 1380
            ++ PKAL D+ ES+ GA+ +D+  +LD VW+IF PI+   +      +P  P+R+L+EL
Sbjct: 2187 VEIPKALSDIFESLAGAIFLDSNFSLDTVWQIFYPIMKERIERYTACIPKSPVRQLLEL 2245



 Score = 47.4 bits (111), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 7/78 (8%)

Query: 463 QKEVLESFRGGKVNLLFATD-----VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR- 516
           Q+E + +FR G +NLL AT      V   G  +P C+ VI   LP +++ Y+ S+ R+R 
Sbjct: 629 QEETITNFRRGAINLLVATQAAISTVTTSGTELPRCNLVIALRLPNSLAEYLSSKARSRL 688

Query: 517 -QHNSQFILMLERGNLKQ 533
             + ++ I +++  ++++
Sbjct: 689 VNYGAKVIYLMDHDSIEK 706


>gi|363992266|gb|AEW46678.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Pteropus alecto]
          Length = 929

 Score =  113 bits (283), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 145/551 (26%), Positives = 247/551 (44%), Gaps = 66/551 (11%)

Query: 46  PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           PR YQL++   AK  +NTI    TG GKT +++++ +   Q     G K  ++F A  V 
Sbjct: 242 PRGYQLELALPAKNGKNTIICAPTGCGKTFVSLLICEHHLQKF-PQGQKGKVVFFAVQVP 300

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           +  QQ  V   + +    +  G  G    +    Q  I  ND++++TPQIL+++L+   +
Sbjct: 301 VYEQQKSVFSKYFERRGYKVSGISGATAENVSVEQI-IEDNDIIILTPQILVNSLKNGTV 359

Query: 165 -SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSS 218
            SL +   ++ DECH+ + +HPY  IM  +  +     SD+ P+V G+TAS  V    S+
Sbjct: 360 PSLSVFTLMIFDECHNTSKHHPYNMIMFNYLDQKLGGSSDSLPQVVGLTASVGVGDAKST 419

Query: 219 AMDCEGQISELESTLD-SQVFTIEDK-TEME--VFVPSA---KESCRFYDQSKFCGSDLK 271
               E  I +L ++LD S V T++D   E+E  V+ P     K   R  D+ K   S L 
Sbjct: 420 GEALE-YICKLCASLDISVVATVKDNLEELEEVVYKPQKFFRKVESRTTDRFKCIISQLM 478

Query: 272 GKLE-VSWSKFD-------ASLSKLQGSQLNCYK---------------DMDDKHKTLR- 307
            + E ++ S FD        + S++Q       K                M DK +  R 
Sbjct: 479 KEAESLAKSIFDTLGTITLGNFSQIQNRNFGTQKYEQWIVAVQKKCMVLKMPDKDEESRI 538

Query: 308 -KQLSDYHAKILYCLDELGLICAYEAVKICLE--KVLKAQEECEIYRQSSLQCKYFLEEV 364
            K L  Y + +    D L +I  +  +K  L+  K          + ++        EE 
Sbjct: 539 CKALFLYTSHLRKFNDAL-IISEHARMKDALDYLKDFFRNVRTAGFDETEQDLTRRFEEK 597

Query: 365 LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI 424
           L  + S       I +D   +  K  DL ++  + + L         + +   I+FV+  
Sbjct: 598 LQELES-------ISMDPSNENPKLKDLCFVLQEEYHL---------NPETRTILFVKTR 641

Query: 425 IAAKVVERFVKKVPFLTHLTVAYLTGS--TTSVDALTPKVQKEVLESFR-GGKVNLLFAT 481
                +++++++ P L+ L     TG   T     +T   QK+VL +F+  G   +L AT
Sbjct: 642 ALVDALKKWIEENPKLSFLKPGISTGRGRTKQNIGMTLPAQKDVLHTFKTSGDNKILIAT 701

Query: 482 DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDII 541
            V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+    ++ ++ K+   I
Sbjct: 702 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNSDVIEKEKI--NI 759

Query: 542 RSERSVTDTAL 552
             E+ + D+ L
Sbjct: 760 YKEKMMNDSIL 770


>gi|115401870|ref|XP_001216523.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114190464|gb|EAU32164.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1635

 Score =  113 bits (282), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 25/231 (10%)

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
           L+ ++Q++ L  FR G+ NL+ ATDV+EEG+ +  CS VI +D P  V S++Q RGRAR+
Sbjct: 408 LSMQMQRDTLSEFRSGQKNLIVATDVLEEGIDISACSVVICYDKPANVKSFVQRRGRARR 467

Query: 518 HNSQFILML----ERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYI 573
             S F ++     E  +L++   L + +    +  D    R  EA  L+    V T+ + 
Sbjct: 468 KESTFAILFSTDDELCDLRKWQLLEEAMIE--AYQDDERKR-CEALALETMAEVVTERFE 524

Query: 574 VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQ-- 631
           VESTGA +T D++V  +H +C +LP   Y   +P       E ++E + T      F+  
Sbjct: 525 VESTGAVLTADTAVARLHHFCSILPQQPYVDNRP-------ELSFEYDGTGRRRGTFKLP 577

Query: 632 TIVGPTSRNKNLSKQL---------VCLEACEKLHQVGALNDHLLPSVEEP 673
           + V P  R     K              + C++L++ G LNDHLLP   +P
Sbjct: 578 SCVHPDVRRTRGEKWWTTERAATKEAAFQTCKRLYEFGLLNDHLLPLTRKP 628



 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 124/280 (44%), Gaps = 44/280 (15%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPSSL-ILEALTTLGCCESFSMERLELLGD 1085
             + +++ RLE+ ++A++L E I    ++    S+  ++ A++          +R E  GD
Sbjct: 876  FISAILDRLEATLIATRLCETI---LQDVQFSSTRHVITAISAPTAQSPTDYQRYEFFGD 932

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV 1145
            SVLK+ VSC L++ +P   EG LS  R   V N+ L +   D  L  +I    F PR+W 
Sbjct: 933  SVLKFTVSCQLYMQHPNWPEGYLSEGRDEIVQNNRLARAALDVGLDAFILTRRFTPRKWT 992

Query: 1146 APGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALI 1205
            AP                          ++    V GK      R + SK +AD  E+LI
Sbjct: 993  AP------------------------LISEKAVEVAGK------RPLSSKVLADVVESLI 1022

Query: 1206 GAYYVGGGLIAALYMMKWLGIDADLEVSLVDDC-ITRASLRSYVPRINEIKDIESKIGYE 1264
            GA Y+ GG   A   ++ L       +  ++ C IT   +    P +     ++  +GY 
Sbjct: 1023 GAAYMDGGQAKAHTCIRRL-------LPEIEICPITPPPVHESAPHVMN-DSLKQHLGYT 1074

Query: 1265 FTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQI 1304
            F  + LL EA+TH S +     Q+ Y+ L+     +L  +
Sbjct: 1075 FVNEALLVEALTHPSCRSDASTQS-YQRLEFLGDAVLDMV 1113



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 79/178 (44%), Gaps = 37/178 (20%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F PR YQ ++FE + + N I  L                             I FLAPTV
Sbjct: 14  FCPRNYQTEMFEASLQENIIVAL-----------------------------IWFLAPTV 44

Query: 104 HLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQILLDALRK 161
            L  QQ+DVI  +    +     G   V+ W  Q  W   +    V+V T  +L DA+  
Sbjct: 45  ALCFQQHDVITKNLPAVKSRTLTGQDKVELWTEQAIWDAILKDMQVVVSTHAVLADAMSN 104

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS------DNKPKVFGMTASPVVR 213
            F+ +  +  ++ DE HH    HP  +IM++FYH +      D  P + G+TASPVVR
Sbjct: 105 GFVRVSQLGLLIFDEAHHCMRRHPANRIMQDFYHPTLVKQGPDAVPGILGLTASPVVR 162


>gi|395844909|ref|XP_003795191.1| PREDICTED: interferon-induced helicase C domain-containing protein
           1 [Otolemur garnettii]
          Length = 1024

 Score =  113 bits (282), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 142/559 (25%), Positives = 243/559 (43%), Gaps = 69/559 (12%)

Query: 23  MGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIK 81
           MGS   +  V    S    +   P  YQ++V + A + +N I  L TG+GKT +AV + K
Sbjct: 287 MGSDSDEENVTARVSPEPELQLRP--YQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAK 344

Query: 82  DIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CW 138
           D     K       +I L   V LV Q +  +     F ++++Y   G+   D+Q    +
Sbjct: 345 DHLDKKKKASVPGKVIVLVNKVLLVEQLF--LEEFKPF-LKKWYRVTGLS-GDTQLKISF 400

Query: 139 QKEINKNDVLVMTPQILLDAL------RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKE 192
            + +  +DV++ T QIL ++L        A +       I+IDECHH      Y  IM+ 
Sbjct: 401 PEVVQSHDVIISTAQILENSLLNTENEEDAGVQFSDFSLIIIDECHHTNKEAVYNNIMRR 460

Query: 193 FYHK--------SDNK-----PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFT 239
           +  +         +NK     P++  +TASP V  G +        I +L + LD+  FT
Sbjct: 461 YVKQKLKNRRLVKENKPAVPLPQILALTASPGV-GGATKQAKANEHILKLCANLDA--FT 517

Query: 240 IED-KTEMEVFVPSAKESCRFYDQSKFCGSD-LKGKLEVSWSKFDA--SLSKLQGSQLNC 295
           I+  K  ++      KE C+    +     D  K KL    +K      +S +       
Sbjct: 518 IKTVKENLDQLKDHIKEPCKKIAIADDTREDPFKEKLIEIMTKIQTYCQVSPMSDFGTQS 577

Query: 296 Y------------KDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKI----CLEK 339
           Y            ++ + K +   + L  Y+ + L   D + +I AY  ++       EK
Sbjct: 578 YEQWVIQMEKEAAREGNRKDRVCAEHLRKYN-EALQINDTIRMIDAYNHLETFYNDVKEK 636

Query: 340 VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPL--ADKIFLDFGFDYSKAVDL----- 392
              AQE+ +   +S        +E  H +   + L   D+  +   F+ +K + +     
Sbjct: 637 KFAAQEDSD---ESGDNDDCDGDEDGHNLKKIVKLDETDRFLITLFFENNKRLKMLAKNP 693

Query: 393 GYISTKLHELLQLFLSFGKSTQ--VLCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YL 448
            + + KL +L    +    ST+     IIF +   +A  + +++ +      + V   +L
Sbjct: 694 KHENQKLTKLRNTIMEQYTSTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHL 753

Query: 449 TGS--TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
            G+  ++    +T   QKEV+  FR GK+NLL AT V EEG+ +  C+ VIR+ L     
Sbjct: 754 IGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEI 813

Query: 507 SYIQSRGRARQHNSQFILM 525
           + +Q+RGRAR   S ++L+
Sbjct: 814 AMVQARGRARADESTYVLL 832


>gi|301785794|ref|XP_002928312.1| PREDICTED: probable ATP-dependent RNA helicase DDX58-like
           [Ailuropoda melanoleuca]
 gi|281341395|gb|EFB16979.1| hypothetical protein PANDA_018227 [Ailuropoda melanoleuca]
          Length = 928

 Score =  113 bits (282), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 155/597 (25%), Positives = 264/597 (44%), Gaps = 76/597 (12%)

Query: 35  PSSSTNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK 93
           PS+S       PR YQL++   AK  +NTI    TG GKT +++++ +   +     G K
Sbjct: 230 PSASPTFTQLKPRNYQLELALPAKEGKNTIICAPTGCGKTFVSLLICEHHLKKF-PQGQK 288

Query: 94  KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ-KEINKN-DVLVMT 151
             ++F A  + +  QQ  V   +  FE +  Y   GV    S+    +EI +N D++++T
Sbjct: 289 GKVVFFAIQLPVYEQQKSVFSKY--FE-KLGYKVAGVSGATSEIVSVEEIVENYDIIILT 345

Query: 152 PQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFG 205
           PQIL+++LRK  + SL +   ++ DECH+   +HPY  IM  +  +     SD  P+V G
Sbjct: 346 PQILVNSLRKGTVPSLSVFTLMIFDECHNTGKHHPYNMIMFNYLDQKLGGSSDPLPQVIG 405

Query: 206 MTASPVV--RKGVSSAMDCEGQISELESTLDSQVF-TIEDK-TEME--VFVPSA---KES 256
           +TAS      K  + AM+    I +L ++LD+ V  T++D   E+E  V+ P     K  
Sbjct: 406 LTASVGTGDAKNTTEAME---YICKLCASLDTSVIATVKDNLEELEEIVYKPQKFFRKVK 462

Query: 257 CRFYDQSKFCGSDLKGKLEVSWSKFDASLS--------KLQGSQLNCYK----------- 297
            R  D+ K   S L  + E    K    LS        ++Q       K           
Sbjct: 463 LRTTDRFKCIISQLMRETESLAKKIFDELSTVTLENVFQIQNRNFGTQKYEQWILSVQKT 522

Query: 298 ----DMDDKHKTLR--KQLSDYHAKILYCLDELGLICAYEAVKICLE--KVLKAQEECEI 349
                + DK +  R  K L  Y + +    D L +I  +  +K  L+  K   A      
Sbjct: 523 CILFQLPDKEEESRICKALYLYTSHLRKYNDAL-IINEHARMKDALDYLKDFFANVRAAG 581

Query: 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSF 409
           + +      +  EE L  + S       + +D G +  K  DL +I  + + L       
Sbjct: 582 FDEIEQHLTWRFEEKLRELES-------VSMDPGNENPKLQDLSFILQEEYHL------- 627

Query: 410 GKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVL 467
             + +   I+FV+       +++++++   L+ L    LTG   T     +T   QK  L
Sbjct: 628 --NPESRTILFVKTRALVDALKKWIEENSELSFLKPGILTGRGKTNQNTGMTLPAQKCAL 685

Query: 468 ESFR-GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
           ++FR  G   +L AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+ 
Sbjct: 686 DAFRTDGDKKILIATSVADEGIDIAQCNLVILYEYVGNVIRMIQTRGRGRARGSKCFLLT 745

Query: 527 ERGNLKQRNKLFDIIRSERSVTDTALSRDP--EACFLKACTYVKTKSYIVESTGASV 581
              ++ ++ K+   I  E+ + D+ L      EA F +    ++ +  ++  +   V
Sbjct: 746 SNADVIEKEKIN--IHKEKMMNDSILRLQTWNEAVFKEKVLQIQIQEKLIRDSQGKV 800


>gi|259485853|tpe|CBF83228.1| TPA: Dicer-like protein 2 [Includes Endoribonuclease dcl2(EC
           3.1.26.-);ATP-dependent helicase dcl2(EC 3.6.1.-)]
           [Source:UniProtKB/Swiss-Prot;Acc:P0C5H7] [Aspergillus
           nidulans FGSC A4]
          Length = 1269

 Score =  113 bits (282), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 185/415 (44%), Gaps = 33/415 (7%)

Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
           +L+  L     K +ASL   +GS L    + D+ + +   Q+  +  K ++   ELG+  
Sbjct: 58  ELRRVLYTPLMKENASL--WEGSTLQKLLERDNTYCS--GQMKTFVCKAVHIFQELGIWA 113

Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
           A   ++  +E++L        Y  S +   Y   E L  I S  P+ D        D   
Sbjct: 114 AEYFIRASVEELLS-----HAYVHSKIDLDYDEREYLVNILSKSPVPD-------IDVHS 161

Query: 389 AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL-THLTVAY 447
                +  +   E L  FL   +      +IFVE+  A  V+   +   P          
Sbjct: 162 TDPKDFPVSPKFEALISFLMSTEDINFSGLIFVEQRAAVTVMSYLLSTHPSTRDRFRTGS 221

Query: 448 LTGSTTSV-------DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
             G + S        D L+ K+Q + L+ FR G+ NL+ ATDV++EG+ V  CS VI ++
Sbjct: 222 FIGMSNSTNRKTMLGDLLSAKMQPDTLDDFRYGRKNLIVATDVLKEGIDVSACSVVICYN 281

Query: 501 LPKTVSSYIQSRGRARQHNSQFILML---ERGNLKQRNKLFDIIRSERSVTDTALSRDPE 557
           +PK   S+IQ RGRAR+ NS + +ML   + G+   + + F+ I  E  + D    R  E
Sbjct: 282 IPKGFESFIQRRGRARRQNSTYSMMLSTEDDGSTLDKWQKFEKIMEEACLEDR--RRTEE 339

Query: 558 ACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA 617
              L +        + V STGA +T + ++  +  +C+ LP   Y   KP F ++  +  
Sbjct: 340 LRALGSLDEDVCTRFCVRSTGAILTAEYAMQHLVHFCDTLPRQNYVEDKPEFSFERNDGG 399

Query: 618 -YECELTLPS--NAPFQTIVGPT-SRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
               ++ LPS  N   +   G    + +  +K+     A + L++ G +ND+LLP
Sbjct: 400 LLRAKVILPSSVNPKVRRAEGKAWWKTERAAKKEAAFYAYKALYEHGLVNDNLLP 454



 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 117/260 (45%), Gaps = 45/260 (17%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPS-SLILEALTTLGCCESFSMERLELLGD 1085
             +P ++ RLE+ ++A++L E +    R+        ++ A+T          +R E  GD
Sbjct: 700  FIPVILDRLEAALVATRLCETV---LRDIQFQDLRHVITAITMPLAQAPTDYQRYEFFGD 756

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV 1145
            SVLK+ V+  LF   P  HEG L+      V N+ L +   D+ L  YI  + F PR+W 
Sbjct: 757  SVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIISNRFTPRKWS 816

Query: 1146 APGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALI 1205
            AP                    +  K +   +            R M +K +AD  EALI
Sbjct: 817  APL-------------------ISEKLYASAST-----------RSMSAKVLADVVEALI 846

Query: 1206 GAYYVGGGLIAALY-MMKWLGIDADLEVSLVDDCITRA-----SLRSYVPRINEIKDIES 1259
            GA Y+ GGL  A   ++++L      E+ L +  + R      S     P + + +++E+
Sbjct: 847  GAAYIDGGLHKAQSCIVRFLP-----EIELPETKLPRPESMPMSKDHKKPHLIQQENLEN 901

Query: 1260 KIGYEFTVKFLLQEAITHAS 1279
             IGY F  K LL EA+TH S
Sbjct: 902  HIGYTFKDKTLLMEALTHPS 921


>gi|282162816|ref|YP_003355201.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
 gi|282155130|dbj|BAI60218.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
          Length = 765

 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 141/518 (27%), Positives = 232/518 (44%), Gaps = 89/518 (17%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQL +   A  R+++ VL TG GKT+IA+ ++      I+  G  K ++ L+PT  LV
Sbjct: 18  REYQLTLARTALERSSLIVLPTGLGKTIIALFVM------IERLGDGKKVLMLSPTKPLV 71

Query: 107 HQQYDVIR--VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL-DALRKAF 163
            Q    +R  +  D E    +      E   + W++    + V+V TPQ++  D L K F
Sbjct: 72  EQHAAFLRRVLTIDPEQVAVFTGSVAPEQREEVWKR----SRVVVSTPQVIENDVLMKRF 127

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
             L  V  I+ DE H ATG++ Y  I K++  +S + P V G+TASP             
Sbjct: 128 -DLRDVSLIIFDEAHRATGDYAYVYIAKKYKEQSSD-PLVLGITASP---------GSTP 176

Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDA 283
            +I+E++  L   +  +E KTE +  V     S   Y++            +V W K D 
Sbjct: 177 EKINEVKQNL--SIEHVELKTENDPDV-----SPYIYEK------------DVEWVKVDV 217

Query: 284 SLSKLQGSQLNCYKD--MDDKHKTLR------------KQLSDYHAKILYCLDELGLICA 329
                + +++    D  MDD+   LR            K+L    AK+   +   G   +
Sbjct: 218 P---DKAAEIKILLDSLMDDRLDRLRAMGVLYNTHLNKKELLMLQAKLQASISRGGSPES 274

Query: 330 YEAVKICLEKVLKAQEECE-IYRQSSLQCKYFLEEVLHVIGS--ALPLADKIFLDFGFDY 386
           Y+AV I  E ++K +   + I  Q  +  K + + +    GS        ++  D     
Sbjct: 275 YKAVSILAE-IMKIEHAVDLIQTQGVVPLKKYFDRLKEEAGSKGGSKATKRLMQDARLAG 333

Query: 387 S-----KAVDLGYISTKLHELLQLFLSFGKSTQVLCII-------FVERIIAAKVVERFV 434
           +      A ++   + K+ E++   L    S++++          FV R +AA  VE  V
Sbjct: 334 AIRVAGTADEVNPKTEKVKEIVVEQLKEKPSSRIIVFTNFRDTAEFVSRELAA--VE-GV 390

Query: 435 KKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
           K V F+          S  +   L+ K Q E+L++FR G+ N L AT V EEG+ +P+  
Sbjct: 391 KPVRFVGQ-------ASKLNDKGLSQKKQVEILDAFRAGEFNTLIATSVAEEGLDIPSTD 443

Query: 495 YVIRFD-LPKTVSSYIQSRGR-ARQHNSQFILMLERGN 530
            VI ++ +P  + S IQ RGR  R    + I+++ +G 
Sbjct: 444 LVIFYEPVPSEIRS-IQRRGRTGRNAVGRVIVLISKGT 480


>gi|380706515|gb|AFD97515.1| dicer, partial [Hymenolepis microstoma]
          Length = 1897

 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 132/254 (51%), Gaps = 34/254 (13%)

Query: 1046 EEINCHSRNFHIPS-SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKH 1104
            ++ +  +R  + P  ++IL++LT L   +  +MERLE +GDS LK+AV+ +L+L YP   
Sbjct: 1400 DDTDLENRILYRPGPAMILQSLTRLAAGDFINMERLETIGDSFLKFAVTTYLYLKYPDAQ 1459

Query: 1105 EGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPCECGVDT 1163
            EG LS  RS  V NS L++ G  +KL G I   AF+P+  W+ P  +        C  D 
Sbjct: 1460 EGSLSLFRSHVVENSNLYRFGCGKKLPGRIVGVAFEPQENWLPPCYV--------CNSDN 1511

Query: 1164 LEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKW 1223
                   +     T           H+++ +K+IADC EAL+G Y    G  +AL +++W
Sbjct: 1512 SSADDSSRLQMVQT-----------HQFLSNKSIADCVEALVGCYLTERGERSALKLLQW 1560

Query: 1224 LGID-----ADLEVS-----LVDDCITRASLRSYVPRINEIK---DIESKIGYEFTVKFL 1270
             G++     ++++ +     + D+     + +  + RI  +     +E+ IGY F  + L
Sbjct: 1561 FGVECLPPSSEMQPTGAPWKMPDERGLTEAEKIEIDRIYHVSRYDKLENTIGYRFKNRRL 1620

Query: 1271 LQEAITHASVQEFY 1284
            L EA+TH++ ++ +
Sbjct: 1621 LIEALTHSTCRDLH 1634



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 14/117 (11%)

Query: 1325 KAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDK--LELPPLRELIELCD 1382
            + PKALGD+ ES+ GAV +D+ L L+ +WRIF P+L   +      +   P+R L+E   
Sbjct: 1779 EVPKALGDVFESLAGAVFLDSGLCLNTLWRIFFPLLRERIERYSTCVAKSPVRRLLEQ-- 1836

Query: 1383 SLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQE----RSRKAAKGKAASQLLKK 1435
                   E    +  MV  + +++L  V +VG G+     R+ + AK  AA    ++
Sbjct: 1837 -----YPERVKFEKPMVRPDGKIRLV-VRVVGIGRYVGIGRTYRLAKSAAADLAYRR 1887


>gi|449528774|ref|XP_004171378.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Cucumis sativus]
          Length = 453

 Score =  112 bits (281), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 203/487 (41%), Gaps = 85/487 (17%)

Query: 519 NSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTG 578
           NS +ILM++ G+    ++L   + S   + + +L      C      Y   +SY VESTG
Sbjct: 3   NSDYILMVKSGDSTTLSRLQRYLASGEIMRNESLCHASLPCVPFRSDY-DEESYYVESTG 61

Query: 579 ASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTS 638
           A VT  SSV LI+ YC  LPSD Y+ P P +  ++      C L LP ++P QT    + 
Sbjct: 62  AVVTLSSSVGLIYFYCSRLPSDCYFKPTPRWDKET------CTLHLPKSSPLQTF--SSK 113

Query: 639 RNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELH 698
            +   SKQ  CLEAC++LH  GAL D+L+P +   +E ++  + N           K L 
Sbjct: 114 DDAKYSKQSACLEACKQLHTCGALTDNLVPQI--VAEESVAQEWN-----------KPLD 160

Query: 699 GTTPIRALSGRWGEKC----GVILHAY----KFNFACSIVTEIYSGFVLLIESELDNDVG 750
              PI  +   +   C     V+ H Y    K NF   I        VL + +EL+ +V 
Sbjct: 161 DEQPI-YVPPEFVHCCPHNSSVVYHCYLIELKQNFHYDISAH---NIVLAMRTELEFEVQ 216

Query: 751 NFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREF 810
           +   +L +   +        G + L  +Q+  ++ FQ   F  L    +   K S + E 
Sbjct: 217 SMCHDLDVDRGSFDVNFKYVGIIKLSPEQVLLSRQFQRTIFRVLLNHTWT-DKLSENNEI 275

Query: 811 FLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQC 870
            L         P   YLLLP         G   I+W  +    SV+   +E        C
Sbjct: 276 CLGD------GPRVDYLLLP-------STGGELISWEIV---LSVLVSSRE-------YC 312

Query: 871 NNNGGNSSPCRTSPCKTGCHGKDV---IHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIV 927
            + G +SS             KDV   +   +G V    L++ VV   H   +Y I  ++
Sbjct: 313 VHRGISSS-------------KDVSYDVPTKSGLVCICRLQNSVVYTPHNDHVYCITSVL 359

Query: 928 NNSSAESPFDGNT-----DDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNF 982
                 S  +GN+      ++   +  Y+  ++GI L    QPLLR K+    HN +  F
Sbjct: 360 ------SELNGNSLLKIRKNEMMAYKEYYKVRHGIDLRFEKQPLLRGKKIFPVHNYIKRF 413

Query: 983 NDGGGSG 989
                 G
Sbjct: 414 RKHKEQG 420


>gi|347447734|pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
           Rig-I
          Length = 695

 Score =  112 bits (281), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 146/604 (24%), Positives = 264/604 (43%), Gaps = 78/604 (12%)

Query: 44  FIPRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           F PR YQL++     K +NTI    TG GKT +++++ +   +     G K  ++F A  
Sbjct: 11  FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF-PQGQKGKVVFFANQ 69

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           + +  QQ  V   + +       G  G    +    Q  +  ND++++TPQIL++ L+K 
Sbjct: 70  IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIIILTPQILVNNLKKG 128

Query: 163 FL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVV--RK 214
            + SL I   ++ DECH+ +  HPY  IM  +  +     S   P+V G+TAS  V   K
Sbjct: 129 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAK 188

Query: 215 GVSSAMDCEGQISELESTLDSQVF-TIE---DKTEMEVFVPSA---KESCRFYDQSKFCG 267
               A+D    I +L ++LD+ V  T++   ++ E  V+ P     K   R  D+ K+  
Sbjct: 189 NTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 245

Query: 268 SDLKGKLEVSWSKF---DASLSKLQGSQLNCYK---------------DMDDKHKTLR-- 307
           + L    E    +      +LS++Q  +    K                M DK +  R  
Sbjct: 246 AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC 305

Query: 308 KQLSDYHAKILYCLDELGLICAYEAVKICLEKV------LKAQEECEIYRQSSLQCKYFL 361
           K L  Y + +    D L +I  +  +K  L+ +      ++A    EI +  + + +  L
Sbjct: 306 KALFLYTSHLRKYNDAL-IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 364

Query: 362 EEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFV 421
           +E+           + +  D   +  K  DL +I  + + L         + + + I+FV
Sbjct: 365 QEL-----------ESVSRDPSNENPKLEDLCFILQEEYHL---------NPETITILFV 404

Query: 422 ERIIAAKVVERFVKKVPFLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRG-GKVNLL 478
           +       ++ +++  P L+ L    LT  G T     +T   QK +L++F+  G  N+L
Sbjct: 405 KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNIL 464

Query: 479 FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF 538
            AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+     + ++ ++ 
Sbjct: 465 IATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQIN 524

Query: 539 DIIRSERSVTDTALSRDP--EACFLKACTYVKTKSYIVESTGAS---VTTDSSVNLIHRY 593
             +  E+ + D+ L      EA F +   +++T    +  +      V    +  L+ R 
Sbjct: 525 --MYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRK 582

Query: 594 CEML 597
           C+ L
Sbjct: 583 CKAL 586


>gi|410108626|gb|AFP73448.2| retinoic acid inducible protein 1, partial [Anser anser]
          Length = 672

 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 132/502 (26%), Positives = 224/502 (44%), Gaps = 49/502 (9%)

Query: 68  TGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGA 127
           TG+GKT +A+++ +   Q + + G K  ++FLA  V +  QQ +V + H  FE    Y  
Sbjct: 7   TGSGKTFVALLVCEHHFQNMPA-GRKGKVVFLATKVPVYEQQKNVFKQH--FE-RRGYSI 62

Query: 128 KGV--DEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNH 184
           +GV  + + +   +  I  ND++V+TPQIL+++     L SL +   ++ DECH+ TGNH
Sbjct: 63  QGVSGENFSNVSVENVIEDNDIIVLTPQILVNSFEDGTLTSLSVFTLMIFDECHNTTGNH 122

Query: 185 PYTKIMKEFYHKSDNKP-----KVFGMTASPVVRKGVSSAMDCEGQISE---LESTLDSQ 236
           PY  +M  +  +  N P     ++ G+TAS     GV +A + E  I     L S LD Q
Sbjct: 123 PYNVLMTRYLEQKFNSPASQLSQILGLTASV----GVGNAKNIEETIEHICSLCSYLDIQ 178

Query: 237 VFTI--EDKTEMEVFVPSAKESCRF-----YDQSKFCGSDLKGKLEVSWSKFDASLSKLQ 289
             +   E+  +++ F+   +   R      ++      SDL  + E    K  +  +  Q
Sbjct: 179 AISTVRENIQDLQRFMNKPEIDVRLVKRRVHNHFAVIISDLMSETEALMRKIYSVGTVSQ 238

Query: 290 GSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD--ELGLICAYEAVKICLEKVLKAQEEC 347
            S+    KD   +       ++    ++L   D  E   IC   A+ IC E + K  +  
Sbjct: 239 NSR----KDFGTQKYEHWIVVTQRKCRLLQLEDKEEESRIC--RALFICTEHLRKYNDAL 292

Query: 348 EIYRQSSL--QCKYFLEEVLHVI-GSALPLADKIFLDFGFDYSKAVDLGYIST----KLH 400
            I   + +     Y  E   +V  G    L   +   F     +   L    T    KL 
Sbjct: 293 IISEDAPIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELTALSKDETNENPKLE 352

Query: 401 EL---LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLT--GSTTSV 455
           EL   L     +   T+ L       ++AA  +++ +++ P L+++    L   G     
Sbjct: 353 ELACILDDAYRYNPQTRTLLFAKTRALVAA--LKKCMEENPILSYIKPDVLMGRGRRDQK 410

Query: 456 DALTPKVQKEVLESFRGGK-VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
             +T   QK VL++F+  K   LL AT V +EG+ +  C+ V+ ++    V+  IQ RGR
Sbjct: 411 TGMTLPSQKGVLDAFKTSKDSRLLIATSVADEGIDIAQCNLVVLYEYSGNVTKMIQVRGR 470

Query: 515 ARQHNSQFILMLERGNLKQRNK 536
            R   S+ IL+  +  + +  K
Sbjct: 471 GRAAGSKCILVTSKTEVVENEK 492


>gi|406356427|gb|AFS34610.1| LGP2 [Ictalurus punctatus]
          Length = 677

 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 138/530 (26%), Positives = 227/530 (42%), Gaps = 86/530 (16%)

Query: 47  RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V +VA R  N+I  L TG GKT  AV + K   +    NG    +  L   VHL
Sbjct: 6   RPYQQEVVQVALRGENSIIWLPTGGGKTRAAVYVAKRHLET-HPNG---KVAVLVNKVHL 61

Query: 106 VHQQYDV-IRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL----R 160
           V Q +    R H    V+    +   +E D   +   +  + +++ T QIL +AL     
Sbjct: 62  VDQHFQKEFRPHLGSSVKMVPISGDSNEKD--FFGCVVRDSSLVICTAQILENALINTEE 119

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGV 216
              + L     ++IDECHH      Y KIM  +  K   +    P++ G+TASP    G 
Sbjct: 120 SKHVELTDFTLLIIDECHHTHKEGVYNKIMARYVRKKIERVKGLPQILGLTASP----GT 175

Query: 217 SSAMDCEGQIS---ELESTLDSQVFTIED-KTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
             A   +G I+   E+ + LDS + + ++ + E++  VP   ++    D           
Sbjct: 176 GGAKSLDGAITHVLEICANLDSVIVSTKNYEAELKEAVPRPMKNYDIVD----------- 224

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
             E  W  F   L K+    ++ +  +D K                + L E+G    YEA
Sbjct: 225 --ERYWDPFGDHL-KMMMKLIHEFMMLDRK----------------FTLREMG-TQEYEA 264

Query: 333 VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKI-------------- 378
             + LEK    QE+  +  + +L  + F + +L  I   + + D +              
Sbjct: 265 DVVELEKK-GVQEQNRLLARCALHLRKFNDALL--INDTVRMVDALRLLEEFYTTETRNV 321

Query: 379 ------FLDFGFDYSKAVDLGYIST------KLHELLQLFLSFGKSTQVLCIIFVERIIA 426
                 FL   F+ +K   L   S       KL  L +  +   K      IIF +    
Sbjct: 322 LDITDEFLTGLFNENKVELLQLASEASNENPKLERLQRTLVDQFKDENSRGIIFAKTREI 381

Query: 427 AKVVERFVKKVPFL--THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVI 484
            + +  +V+  P L   ++  A L G+ T    +T + Q++ +++FR G++NLL +T V 
Sbjct: 382 TRCLYDWVRTNPELRRANIRAANLVGAGTGATHMTQREQRDTIKTFREGELNLLISTSVA 441

Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR 534
           EEG+ +P C+ VIR+ L     +  Q+ GRAR  NS + ++ + G  + R
Sbjct: 442 EEGLDIPECNVVIRYGLLTNEIAQQQASGRARAKNSVYSVVAKAGGREMR 491


>gi|145540581|ref|XP_001455980.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74834199|emb|CAI44479.1| Dicer-like ribonuclease with helicase and Rnase III domains
           [Paramecium tetraurelia]
 gi|124423789|emb|CAK88583.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1797

 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 111/225 (49%), Gaps = 50/225 (22%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL-IIFLAP 101
           +F  R YQ+ +F+ +K +N+I  LETG GKT IA+M    I   IK NGF+   ++FLA 
Sbjct: 63  DFEIRDYQIDLFQKSKEKNSIIFLETGRGKTHIALM---HIYYYIKKNGFQNTKLVFLAN 119

Query: 102 TVHLVHQQYDVIR-------------------VHTDFEVEEYYGAK-------------G 129
           T+ LV QQ  +IR                    H D ++ +    K             G
Sbjct: 120 TIQLVEQQCQLIRDQIYSVAQEMEKKGLAPQDYHFDLQLFKDNSFKRKFIVPIHSKSILG 179

Query: 130 VDE-WDSQCWQKE-----INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN 183
           +DE  D Q W+KE     IN++ VLVM  Q+LL+ALR+ +L L     I+ DECHH T  
Sbjct: 180 IDEGMDIQGWKKERWDDIINESCVLVMMGQMLLNALRRGYLKLPYFSLIIFDECHHCTQR 239

Query: 184 HPYTKIMKEFYH--------KSDNKPKVFGMTASPVVRKGVSSAM 220
           H Y  I+KEF          +   K K  G+TA+PV    +  A+
Sbjct: 240 HSYRLIIKEFLECEKVKKQIQHSEKVKFLGLTATPVTSVDIERAV 284



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 99/236 (41%), Gaps = 29/236 (12%)

Query: 459 TPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518
           T   QKE ++ F+    N+L +T+V EEG  VPNC YV  F    T+  +IQ  GRAR  
Sbjct: 588 TSNAQKESIKKFKES-CNILVSTNVTEEGFDVPNCHYVFIFGEITTLKQFIQKIGRARAE 646

Query: 519 NSQFILMLERGN----LKQRNKLFDIIR-SERSVTDTALSRDPEACFLK----------- 562
            S F  +L +      + +   LF      ER + +  L+++     LK           
Sbjct: 647 GSVFYFILPKEKELMWMAKEKVLFKTKECVERKIEE--LNKNNYYSDLKNRINSLNKQIN 704

Query: 563 ACTYVKTKSY---IVESTGASVTTDSSVNLIHRYCEMLPS------DKYYTPKPIFKYKS 613
                K + Y   +V+ + A V  + +V ++  Y  +  +      D+ Y     ++Y  
Sbjct: 705 NIPKFKEEYYDCRLVKDSLALVNVNWAVEILSNYANIFKNFEYRGKDENYIRGIFYQYTE 764

Query: 614 AEE-AYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
                ++C L LP N   +  +G   + K  +K+    +A   L Q   L + L P
Sbjct: 765 FPSLGWKCVLILPKNFSDRYFIGDLMKTKEDAKRSAAFKAVLILKQKQMLTEDLRP 820



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 18/218 (8%)

Query: 1080 LELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAF 1139
            LE LGD+ LK   S  +F+ +P  +E  L   R+  V N  L K     +    I+ + F
Sbjct: 1327 LEFLGDANLKLLSSIEVFVQFPFANEHLLHLERARIVSNENLRKFSIIHRFFNCIKCTNF 1386

Query: 1140 D---PRRWVAPGQLSLRPVPCECGVDTLEVPLDGKF-FTQDTKVVVGKPCDMGHRWMGSK 1195
            D   P   +      L  +  E   +  E   + K+ +TQ+ +V+   P    ++ +  K
Sbjct: 1387 DYSPPEFLLDKNTQELSEIQPEKQKENKE---NTKYQYTQNGEVITELP--KNYQPIPEK 1441

Query: 1196 TIADCAEALIGAYYV--GGGLIAALYMMKWLGIDADLEVSLVDDCITRAS-LRSYVPRIN 1252
              +D  EAL GA+ +     + A  + +  +G+   L+  L    +  ++ L++      
Sbjct: 1442 VHSDVVEALNGAFLIQYDEDINACQFFLHRIGV---LKYPLAQVKLKNSTTLQAKGLLQK 1498

Query: 1253 EIKDIESKIGYEFTVKFLLQEAITHA---SVQEFYCYQ 1287
             +  +E+ IGY+F  + +L +AITH    SV +FY Y+
Sbjct: 1499 NLNSLENIIGYKFNDQSILIQAITHQSFLSVLDFYNYR 1536


>gi|440893954|gb|ELR46543.1| Putative ATP-dependent RNA helicase DDX58, partial [Bos grunniens
           mutus]
          Length = 927

 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 139/537 (25%), Positives = 243/537 (45%), Gaps = 66/537 (12%)

Query: 46  PRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           PR YQL++     K +NTI    TG GKT +++++ +   +        K+++F A  V 
Sbjct: 241 PRNYQLELALPAQKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGRKGKVVVF-AVQVP 299

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           L  QQ  V   H +    +  G  G +  D+   ++ +  ND++++TPQIL+++L+   +
Sbjct: 300 LYEQQKSVFSEHFERFGYKVSGISG-ETADNISVEQIVENNDIIILTPQILVNSLKDGTI 358

Query: 165 -SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSS 218
            SL I   ++ DECH+   +HPY  IM  +  +     SD+ P+V G+TAS  V    ++
Sbjct: 359 PSLSIFTLMIFDECHNTNKHHPYNMIMFHYLDQKLGGSSDSLPQVLGLTASVGVGDAKNT 418

Query: 219 AMDCEGQISELESTLDSQVFTI--EDKTEME--VFVPSA---KESCRFYDQSKFCGSDLK 271
           A   E  I +L ++LD+ V T   ++  E+E  V+ P     K   R  D+ K   S L 
Sbjct: 419 AEATE-YICKLCASLDTAVVTTVRDNLEELEEVVYKPQKFFRKVESRTTDRFKRIISQLM 477

Query: 272 GKLE-VSWSKFD-------ASLSKLQGSQLNCYK---------------DMDDKHKTLR- 307
            + E ++ S F+        +LS++Q       K                M DK +  R 
Sbjct: 478 AETEALAKSIFEELGTVTLENLSRIQNRNFGTQKYEQWIIAVQKACMVFQMPDKEEESRI 537

Query: 308 -KQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ---CKYFLEE 363
            K L  Y + +    D L +I     +K  L  +    +        +++    + F E+
Sbjct: 538 CKALFLYTSHLRKYNDAL-IINEDARMKDALNYLKNFFKNVRAAGFDAIEQDLTQRFEEK 596

Query: 364 VLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVER 423
           +L + G        I +D   + +K  DL +I       LQ        T+ +  +    
Sbjct: 597 LLELEG--------ISMDPSNENAKLKDLCFI-------LQEEYHLNPETRTILFVKTRA 641

Query: 424 IIAAKVVERFVKKVPFLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRGGK-VNLLFA 480
           ++ A  ++ ++++ P L+ L    LT  G T     +T   QK  L++FR  +   +L A
Sbjct: 642 LVDA--LKNWIEENPKLSFLKPGILTGRGRTNQTMGMTLPAQKCALDAFRTNRDSKILIA 699

Query: 481 TDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           T V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+    ++ ++ KL
Sbjct: 700 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNADVIEKEKL 756


>gi|4405795|gb|AAD19826.1| RNA helicase [Homo sapiens]
          Length = 925

 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 149/613 (24%), Positives = 262/613 (42%), Gaps = 74/613 (12%)

Query: 35  PSSSTNSIN----FIPRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS 89
           P S  +  N    F PR YQL++     K +NTI    TG GKT +++++ +   +    
Sbjct: 228 PPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF-P 286

Query: 90  NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLV 149
            G K  ++F A  + +  QQ  V   + +       G  G    +    Q  +  ND+++
Sbjct: 287 QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIII 345

Query: 150 MTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKV 203
           +TPQIL++ L+K  + SL I   ++ DECH+ +  HPY  IM  +  +     S   P+V
Sbjct: 346 LTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQV 405

Query: 204 FGMTASPVV--RKGVSSAMDCEGQISELESTLD-SQVFTIE---DKTEMEVFVPSA---K 254
            G+TAS  V   K    A+D    I +L ++LD S + T++   ++ E  V+ P     K
Sbjct: 406 IGLTASVGVGDAKNTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRK 462

Query: 255 ESCRFYDQSKFCGSDLKGKLEVSWSKF---DASLSKLQGSQLNCYK-------------- 297
              R  D+ K+  + L    E    +      +LS++Q  +    K              
Sbjct: 463 VESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMV 522

Query: 298 -DMDDKHKTLR--KQLSDYHAKILYCLDELGLICAYEAVKICLE--KVLKAQEECEIYRQ 352
             M DK +  R  K L  Y + +    D L +I  +  +K  L+  K   +      + +
Sbjct: 523 FQMPDKDEESRICKALFLYTSHLRKYNDAL-IISEHARMKDALDYLKDFFSNVRAAGFEE 581

Query: 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKS 412
                    EE L  + S       +  D   +  K  DL +I  + + L         +
Sbjct: 582 IEQDLTQRFEEKLQELES-------VSRDPSNENPKLEDLCFILQEEYHL---------N 625

Query: 413 TQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVLESF 470
            + + I+FV+       ++ +++  P L+ L    LTG   T     +T   QK +L++F
Sbjct: 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685

Query: 471 RG-GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG 529
           +  G  N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+    
Sbjct: 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNA 745

Query: 530 NLKQRNKLFDIIRSERSVTDTALSRDP--EACFLKACTYVKTKSYIVESTGAS---VTTD 584
            + ++ ++   +  E+ + D+ L      EA F +   +++T    +  +      V   
Sbjct: 746 GVIEKEQIN--MYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDK 803

Query: 585 SSVNLIHRYCEML 597
            +  L+ R C+ L
Sbjct: 804 ENKKLLCRKCKAL 816


>gi|397520025|ref|XP_003830148.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 isoform 1 [Pan
           paniscus]
          Length = 925

 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 149/617 (24%), Positives = 269/617 (43%), Gaps = 82/617 (13%)

Query: 35  PSSSTNSIN----FIPRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS 89
           P S  +  N    F PR YQL++     K +NTI    TG GKT +++++ +   +    
Sbjct: 228 PPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF-P 286

Query: 90  NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLV 149
            G K  ++F A  + +  QQ  V   + +       G  G    +    Q  +  ND+++
Sbjct: 287 QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIII 345

Query: 150 MTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKV 203
           +TPQIL++ L+K  + SL I   ++ DECH+ +  HPY  IM  +  +     S   P+V
Sbjct: 346 LTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQV 405

Query: 204 FGMTASPVV--RKGVSSAMDCEGQISELESTLD-SQVFTIE---DKTEMEVFVPSA---K 254
            G+TAS  V   K    A+D    I +L ++LD S + T++   ++ E  V+ P     K
Sbjct: 406 IGLTASVGVGDAKNTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRK 462

Query: 255 ESCRFYDQSKFCGSDLKGKLEVSWSKF---DASLSKLQGSQLNCYK-------------- 297
              R  D+ K+  + L    E    +      +LS++Q  +    K              
Sbjct: 463 VESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMV 522

Query: 298 -DMDDKHKTLR--KQLSDYHAKILYCLDELGLICAYEAVKICLEKV------LKAQEECE 348
             M DK +  R  K L  Y + +    D L +I  +  +K  L+ +      ++A    E
Sbjct: 523 FQMPDKDEESRICKALFLYTSHLRKYNDAL-IISEHARMKDALDYLKDFFSNVRAAGFDE 581

Query: 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS 408
           I +  + + +  L+E+           + +  D   +  K  DL +I  + + L      
Sbjct: 582 IEQDLTQRFEEKLQEL-----------ESVSRDPSNENPKLEDLCFILQEEYHL------ 624

Query: 409 FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEV 466
              + + + I+FV+       ++ +++  P L+ L  + LTG   T     +T   QK +
Sbjct: 625 ---NPETITILFVKTRALVDALKNWIEGNPKLSFLKPSILTGRGKTNQNTGMTLPAQKCI 681

Query: 467 LESFRG-GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           L++F+  G  N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+
Sbjct: 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDP--EACFLKACTYVKTKSYIVESTGAS--- 580
                + ++ ++   +  E+ + D+ L      EA F +   +++T    +  +      
Sbjct: 742 TSNAGVIEKEQIN--MYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKP 799

Query: 581 VTTDSSVNLIHRYCEML 597
           V    +  L+ R C+ L
Sbjct: 800 VPDKENKKLLCRKCKAL 816


>gi|443723522|gb|ELU11899.1| hypothetical protein CAPTEDRAFT_221268 [Capitella teleta]
          Length = 740

 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 133/528 (25%), Positives = 229/528 (43%), Gaps = 83/528 (15%)

Query: 45  IPR-IYQLKVFEVA---KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL----I 96
           IPR +YQ+++ +     K  N + V  T +GKT++A  ++K        N F K+     
Sbjct: 70  IPRRLYQIELVDRILELKGANAVIVAPTNSGKTLVAADILK--------NHFDKVPGSKA 121

Query: 97  IFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINK----NDVLVMTP 152
           +FL P   L  QQ + +  +      +    +        C  ++IN      D+LVMTP
Sbjct: 122 VFLVPNGLLAQQQGEALGKYLPKANTKVLRGEA-------CTSEQINDLLQTTDILVMTP 174

Query: 153 QILLDALRKAFLSLDI---VCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-------PK 202
           QIL++A   AF        +  IV+DECHH     PY+++M+ F+     +       P+
Sbjct: 175 QILINAYDDAFDQDKPSFPISLIVLDECHHCVKKAPYSQLMEIFHLHLPGRPEPLPKLPQ 234

Query: 203 VFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYD 261
           V G+TAS  VR   S     E  I +L + +D+++  +E +K E+  +    +E    Y 
Sbjct: 235 VIGLTAS--VRISTSKTDTAECNIFKLLANMDARLVMVEKNKDELAFYCAPPEEILVEYK 292

Query: 262 ---QSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL 318
              Q        K K ++++ ++   L  +    ++  +D + KH             ++
Sbjct: 293 DRFQIDVVIKPRKKKADLAYVQW---LRNISTKLISLIEDAECKH------------DLV 337

Query: 319 YCLDEL-----GLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALP 373
            C++ L      L+  YE         LK + +  +Y++S  +             +   
Sbjct: 338 SCVEYLDMYNNSLMLNYECRSTDAYNYLKERAKTLMYKESRPE------------STDAW 385

Query: 374 LADKIFLDFGF--DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVV 430
           LADK     G    Y  + D       L E   +  +      + CIIF   R I + +V
Sbjct: 386 LADKYKGKIGTIEHYLCSSDENSWLAVLKE--HIMKTKKPGAPMRCIIFCRTREICSALV 443

Query: 431 ERFVKKVPFLTHLTVAYLTGS--TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488
           + +      L  L   ++TGS  +TS   LT + Q E+ + F  G+  +LFAT V +EG+
Sbjct: 444 D-WANDSEELCDLNPGFITGSNASTSSKGLTNQQQNEIKQEFLDGRRQILFATSVAQEGV 502

Query: 489 HVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
            V  C  VI ++    + + IQ+RGRAR+  + + ++  +  LK   K
Sbjct: 503 DVKKCDNVICYNFTSDMVARIQTRGRARKSGATYTVLATKQRLKDEEK 550


>gi|27881482|ref|NP_055129.2| probable ATP-dependent RNA helicase DDX58 [Homo sapiens]
 gi|114624048|ref|XP_001156662.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 isoform 4 [Pan
           troglodytes]
 gi|81170421|sp|O95786.2|DDX58_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX58; AltName:
           Full=DEAD box protein 58; AltName: Full=RIG-I-like
           receptor 1; Short=RLR-1; AltName: Full=Retinoic
           acid-inducible gene 1 protein; Short=RIG-1; AltName:
           Full=Retinoic acid-inducible gene I protein; Short=RIG-I
 gi|119578952|gb|EAW58548.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58, isoform CRA_b [Homo
           sapiens]
 gi|124376888|gb|AAI32787.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Homo sapiens]
 gi|168278056|dbj|BAG11006.1| ATP-dependent RNA helicase DDX58 [synthetic construct]
 gi|187952415|gb|AAI36611.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Homo sapiens]
 gi|410218244|gb|JAA06341.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Pan troglodytes]
 gi|410302632|gb|JAA29916.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Pan troglodytes]
 gi|410336301|gb|JAA37097.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Pan troglodytes]
          Length = 925

 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 149/617 (24%), Positives = 268/617 (43%), Gaps = 82/617 (13%)

Query: 35  PSSSTNSIN----FIPRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS 89
           P S  +  N    F PR YQL++     K +NTI    TG GKT +++++ +   +    
Sbjct: 228 PPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF-P 286

Query: 90  NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLV 149
            G K  ++F A  + +  QQ  V   + +       G  G    +    Q  +  ND+++
Sbjct: 287 QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIII 345

Query: 150 MTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKV 203
           +TPQIL++ L+K  + SL I   ++ DECH+ +  HPY  IM  +  +     S   P+V
Sbjct: 346 LTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQV 405

Query: 204 FGMTASPVV--RKGVSSAMDCEGQISELESTLD-SQVFTIE---DKTEMEVFVPSA---K 254
            G+TAS  V   K    A+D    I +L ++LD S + T++   ++ E  V+ P     K
Sbjct: 406 IGLTASVGVGDAKNTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRK 462

Query: 255 ESCRFYDQSKFCGSDLKGKLEVSWSKF---DASLSKLQGSQLNCYK-------------- 297
              R  D+ K+  + L    E    +      +LS++Q  +    K              
Sbjct: 463 VESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMV 522

Query: 298 -DMDDKHKTLR--KQLSDYHAKILYCLDELGLICAYEAVKICLEKV------LKAQEECE 348
             M DK +  R  K L  Y + +    D L +I  +  +K  L+ +      ++A    E
Sbjct: 523 FQMPDKDEESRICKALFLYTSHLRKYNDAL-IISEHARMKDALDYLKDFFSNVRAAGFDE 581

Query: 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS 408
           I +  + + +  L+E+           + +  D   +  K  DL +I  + + L      
Sbjct: 582 IEQDLTQRFEEKLQEL-----------ESVSRDPSNENPKLEDLCFILQEEYHL------ 624

Query: 409 FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEV 466
              + + + I+FV+       ++ +++  P L+ L    LTG   T     +T   QK +
Sbjct: 625 ---NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681

Query: 467 LESFRG-GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           L++F+  G  N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+
Sbjct: 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741

Query: 526 LERGNLKQRNKLFDIIRSERSVTDTALSRDP--EACFLKACTYVKTKSYIVESTGAS--- 580
                + ++ ++   +  E+ + D+ L      EA F +   +++T    +  +      
Sbjct: 742 TSNAGVIEKEQIN--MYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKP 799

Query: 581 VTTDSSVNLIHRYCEML 597
           V    +  L+ R C+ L
Sbjct: 800 VPDKENKKLLCRKCKAL 816


>gi|307105763|gb|EFN54011.1| hypothetical protein CHLNCDRAFT_58365 [Chlorella variabilis]
          Length = 1346

 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 105/212 (49%), Gaps = 12/212 (5%)

Query: 47  RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +   +A   RN I V +TG+GKT+IAV    D+  A  S       +FLAPTV L
Sbjct: 684 RGYQQRAVTLAATGRNMIVVGDTGSGKTVIAVARAVDMTLADPS----ARTVFLAPTVQL 739

Query: 106 VHQQYDVIRVHTDFE--VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
           V QQ  V   +  F        G    +    + WQ+ +  N V+VMTPQ+ L+ L    
Sbjct: 740 VQQQTAVFLSYPSFSSGALRATGRTSDNPVAPRDWQRLLEDNHVVVMTPQLFLNMLNAGA 799

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
                +  +V+DECHHA  +HP  K+M+     S    +V G+TASP  R  + + +   
Sbjct: 800 AHFHQISLLVVDECHHAQADHPVNKVMRH-NRSSARTTQVLGLTASPASRDSLDATLQA- 857

Query: 224 GQISELESTLDSQVFTI-EDKTEMEVFVPSAK 254
             + +LE  LD+Q++ + E   E+   VP  +
Sbjct: 858 --LHQLELNLDAQLYVVDESDEELRAAVPEVQ 887



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%)

Query: 458  LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
            +T K Q+  +E+FR     LL +T   EEG+ VP C +V+R+   +T    +QS GRAR+
Sbjct: 1105 MTSKEQRAAMEAFRQPGCRLLVSTSAGEEGIDVPRCEFVVRYSAAQTGRERVQSAGRARK 1164

Query: 518  HNSQFILMLER 528
              S+F+ ++ER
Sbjct: 1165 LGSRFVEIVER 1175


>gi|409050172|gb|EKM59649.1| hypothetical protein PHACADRAFT_114689 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1230

 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/432 (23%), Positives = 172/432 (39%), Gaps = 101/432 (23%)

Query: 1009 PELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTT 1068
            PEL  +  +P S+ +++ LLPS+   ++ ++L  ++R  +   S    I    + +A+T 
Sbjct: 710  PELCYKFVIPASIWRTVLLLPSITHMIDRMLLVKEMRVAVFNQS----IGEGDLFQAVTP 765

Query: 1069 LGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDR 1128
            +        ERLELLGD++LK  +S + F T P K EG LS+ R   V N  LH+     
Sbjct: 766  VSANVEKDYERLELLGDALLKDILSTYFFATMPTKREGALSSARGQVVSNKMLHQNAMAA 825

Query: 1129 KLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGV--DTLEVPLDGKFFTQDTKVVVGKPCD 1186
             +  +I+      + W     L  R    + G   D        +   QD +        
Sbjct: 826  GMPPWIQSKPLVVKLWTP--YLVARQDAGDVGTSNDHRRGKRQKQLEEQDVQ-------- 875

Query: 1187 MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRS 1246
                W+G KT+AD  EA++GA +  GG    L  MK L  +   E++   D       R 
Sbjct: 876  ----WLGDKTVADVVEAVVGAAFHQGGTDNVLRTMKILQFNMP-EIAEHSDF-----WRV 925

Query: 1247 YVPR-----------INEIKDIESKIGYEFTVKFLLQEAITHASVQE------------- 1282
            Y P            +   + +E+  G++F    +L EA+TH S+               
Sbjct: 926  YAPNAPSHKTFCDLPVGTSEAVEAITGFKFHTPAILAEALTHGSISNQHMTSYDRLEFLG 985

Query: 1283 ---------FYCYQ------------------------------NLYKHLQHCSTLLLSQ 1303
                     +Y ++                               LY+H+++CS  ++S 
Sbjct: 986  DGILDSNIVWYIFKAYPKLSPGGLSLLKAAMVSNLTLAAVAVESGLYEHVRYCSKEIMSA 1045

Query: 1304 ITEYVKSF-------PKPGETTDSGPS-----MKAPKALGDLLESIVGAVLIDTKLNLDE 1351
            +  YV+          +  E     P+     + APK L DL+E+IVGA+ +  +     
Sbjct: 1046 VKLYVQKIFTLRDQEYRDAEAESRLPNQFWLEVDAPKPLADLVEAIVGAIYVSDRFGTQG 1105

Query: 1352 VWRIFKPILSPI 1363
            V   F+ +L P 
Sbjct: 1106 VKTFFQKVLRPF 1117


>gi|327272183|ref|XP_003220865.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like [Anolis
           carolinensis]
          Length = 680

 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 150/557 (26%), Positives = 248/557 (44%), Gaps = 82/557 (14%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V E A + +N I  L TGAGKT  A  + K   + ++S    K+ + L   V L
Sbjct: 4   REYQWEVIEPALEGKNIIIWLPTGAGKTRAAAYVCK---RHLESRAKSKVAV-LVNMVPL 59

Query: 106 V--HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V  H + +   +   F +E   G    D      +   + KN++++ T +IL +AL    
Sbjct: 60  VDQHIKNEFSFLKNRFNIEAISG----DSIQKMIFSDVVKKNNLIICTAKILQNALDSQD 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HK---SDNKPKVFGMTASPVVRKG 215
               + L     +VIDECHH      Y KIM+ +  HK     N P++ G+TAS +   G
Sbjct: 116 EDVHVELTDFSLLVIDECHHTHKETTYNKIMQHYLEHKLKGQKNLPQILGLTAS-LGTGG 174

Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTE--MEVFVPSAKESCRFYD---QSKFCGSDL 270
            SS    +  I ++ + LD++     +K +  ++  +P  K+     D   +  F G  L
Sbjct: 175 ASSLEGAQDHILQICANLDTEKIMSSEKYKFYLDTRIPQPKKQYDLSDPRLRDPF-GQQL 233

Query: 271 KGKLEVSWSKFD-ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCL-------- 321
           K  +    +  D  SLS   GSQ    + +D     L++   ++  KI  C         
Sbjct: 234 KMIMTEICTYLDLPSLSTDFGSQTFEQQVVD----LLKEGAKEFCQKIRVCALHLRKYND 289

Query: 322 -----DELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLAD 376
                D + +I A+ A+              E Y+         LE  + V+    P   
Sbjct: 290 ALLINDTVRMIDAFNALD-------------EFYK---------LENAMKVLHH--PAER 325

Query: 377 KIFLDFGFDYSK----AVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVE 431
            +   FG + ++    A D  Y + KL +L Q+    F +      I+F     +A  + 
Sbjct: 326 HLVEIFGRNRAELLALAEDKSYENPKLEKLQQVLQDQFQELKSSRGIVFTRTRQSAHSLH 385

Query: 432 RFVKKVPFLTHLTV--AYLTGS--TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEG 487
           ++++    L  L +  A LTG+  +  +  +T + Q+ V+++FR G +NLLF+T V EEG
Sbjct: 386 QWLQDNRALCELGIKAAVLTGAGYSNQIKHMTQQEQQNVIQNFRKGALNLLFSTSVAEEG 445

Query: 488 MHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQ--RNKLFDIIRS-- 543
           + VP C+ V+R+ L     + +Q+RGRAR  NS    +L + N K+  R KL + + S  
Sbjct: 446 LDVPECNIVVRYGLMTNEIAMMQARGRARAPNS-ICSVLAKTNSKEVSREKLNEDLESLM 504

Query: 544 ERSVTDTALSRDPEACF 560
           ER++         E C 
Sbjct: 505 ERAIKRVQQMPQHEYCM 521


>gi|409095334|ref|ZP_11215358.1| Hef nuclease [Thermococcus zilligii AN1]
          Length = 796

 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 131/500 (26%), Positives = 212/500 (42%), Gaps = 52/500 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR+YQ  ++   K RN + VL TG GKT+IA MLI D     + + +   ++ LAPT  L
Sbjct: 11  PRVYQEVIYARCKERNCLVVLPTGLGKTLIA-MLIADY----RLSKYGGKVLMLAPTKPL 65

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKG--VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
             Q  +  R   D   E+     G    E   + W+K +    V+  TPQ + + +    
Sbjct: 66  AVQHAESFRRLFDLPPEKINVLTGELPPEKREELWEKSV----VITATPQTIENDVLTGG 121

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
           +SL+ V  +V DE H A GN+ Y  I KE Y K+   P V G+TASP            E
Sbjct: 122 ISLEDVVLLVFDEAHRAVGNYSYVFIAKE-YLKTAKHPLVLGLTASP---------GSDE 171

Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDL----KGKLEVSWS 279
            +I E+   L   +  IE +TE    V        F    ++ G DL    +    +   
Sbjct: 172 EKIREIIRNLG--IEHIEVRTESSPDVKPYVHGISF----EWVGVDLPEIYREVRSILRE 225

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339
               SL  L  + L      D   + + +  S  +  +      LG +  ++A      K
Sbjct: 226 MLKESLKPLANAGLVSSASPDIPKREVLQAGSRINHALSQGDHSLGSLMKHQA------K 279

Query: 340 VLKAQEECEIYRQSSLQCKYFLEEVLH---VIGSALPLADKIFLDFGFDYSKAVDLGYIS 396
            +K     E+     L       + LH      S   + D       +  ++A + G   
Sbjct: 280 AMKLHHAIELLETQGLTALRAYLKKLHEDRSRSSRELMEDPRMRKVVYLLAQAKESGIDH 339

Query: 397 TKLHELLQLFL-SFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS 454
            K+ +L +L     G+      I+F   R    K+VE   ++      ++V    G  + 
Sbjct: 340 PKMEKLKELIRGQLGRKPNSKIIVFTNYRDTGKKIVEELRRE-----GISVERFIGQASR 394

Query: 455 VD--ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD-LPKTVSSYIQS 511
            D   ++ + QKE+L+ F  G+ ++L AT V EEG+ VP    VI ++ +P  + S IQ 
Sbjct: 395 ADDRGMSQREQKEILDKFSRGEFSVLVATSVGEEGLDVPEVDLVIFYEPVPSAIRS-IQR 453

Query: 512 RGRARQHN-SQFILMLERGN 530
           RGR  +H   + ++++ +G 
Sbjct: 454 RGRTGRHRPGKVVILMAKGT 473


>gi|339261112|ref|XP_003368069.1| conserved hypothetical protein [Trichinella spiralis]
 gi|316963063|gb|EFV48890.1| conserved hypothetical protein [Trichinella spiralis]
          Length = 654

 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 39/269 (14%)

Query: 441 THLTVAYLTGSTTSVDALTPKV--QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
           ++L V Y+ GS  S +   P    Q+EVL++FR GK+NLL AT ++EEG+ V +C+YVIR
Sbjct: 140 SYLEVDYVVGSRMSAEVAEPSFARQEEVLKNFRHGKLNLLAATSILEEGIDVRHCNYVIR 199

Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD-IIRSE-------RSVTDT 550
           FD P T  S++QS+GRARQ  + + ++++   LK   ++ +  + +E       R +   
Sbjct: 200 FDTPLTFRSFVQSKGRARQKIAYYTILVQDRFLKSFQEMLNSFVETEKFLKVNGRDLNIL 259

Query: 551 ALSRDPEACF------LKAC------------TYVKTKSYIVESTG-----ASVTTDSSV 587
             ++D +  +      +  C            + V+      E  G     A +   S+ 
Sbjct: 260 TRTKDRDRSYSGNNDQVDNCRKEVNLPNGDVDSLVEPYYTYFEENGLVKKAACLVLSSAH 319

Query: 588 NLIHRYCEMLPSDKYYTPKPIFKY-----KSAEEAYECELTLPSNAPF-QTIVGPTSRNK 641
           N+I RYC  L  D++    P F       K    +Y   + LP+ +P  + I G   +N 
Sbjct: 320 NVIKRYCNKLRKDRFADSSPKFSVQTILNKDLSISYVATVQLPTTSPLKKKIEGKPMQNA 379

Query: 642 NLSKQLVCLEACEKLHQVGALNDHLLPSV 670
            L++     E  + LH +G LN+ L+P V
Sbjct: 380 KLAEMAAAFETAKMLHAMGELNEFLIPPV 408


>gi|146149942|gb|ABQ02405.1| dicer [Schistosoma mansoni]
          Length = 2641

 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 139/312 (44%), Gaps = 67/312 (21%)

Query: 1035 LESLMLASQLREEI---NCHSRNFHIPSSLILEALTTLGCCESF-SMERLELLGDSVLKY 1090
            L    ++ QL  E    N   R +    + IL+ALT + C   F ++ER+E +GDS LK+
Sbjct: 1917 LSEFNISRQLDSEKPSNNIRKRAYQPGPTTILQALT-MSCSNDFINLERMETIGDSFLKF 1975

Query: 1091 AVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQ 1149
             V+ HL+LTYP+ HEG+LS  RS  VCNS L++LG  + LQ  +    F+P   W+ PG 
Sbjct: 1976 VVTVHLYLTYPEAHEGKLSHLRSRIVCNSNLYRLGKAKDLQNRMIGCKFEPHENWIPPGY 2035

Query: 1150 LSLRPVPCECGV---------------DTL---EVPLDGKFFTQ---------------- 1175
               +       +               DTL   EV  +  F  +                
Sbjct: 2036 YVRQDKRLNNEIIKKFESNRNLVIWSTDTLMDDEVLRNIDFIDENKIKPIENFPISEWDP 2095

Query: 1176 -DTKVVVGKPCDMGH-----RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGID-- 1227
             D KV+  +  +  +     + +  K+IADC EALIG Y    G  +AL +M+W GID  
Sbjct: 2096 NDPKVLHAQHLNNQYLITIQQAIPDKSIADCVEALIGCYLTTRGERSALRLMQWFGIDCL 2155

Query: 1228 ---------ADLEVSL-----VDDCITRASLRS--YVPRINEIKDIESKIGYEFTVKFLL 1271
                     A    SL     +D    RA+L     V R +E   +ES + Y F    LL
Sbjct: 2156 HKSDNSQPTARAPWSLPKSNYLDTDENRANLNEARLVWRFDE---LESSLNYTFKDPSLL 2212

Query: 1272 QEAITHASVQEF 1283
             +A TH S  + 
Sbjct: 2213 IQAFTHPSYHQL 2224



 Score = 53.9 bits (128), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIEL 1380
            ++ PKAL D+ ES+ GA+ +D+  +LD VW+IF PI+   +      +P  P+R+L+EL
Sbjct: 2509 VEIPKALSDIFESLAGAIFLDSNFSLDTVWQIFYPIMKERIERYTACIPKSPVRQLLEL 2567



 Score = 47.4 bits (111), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 7/78 (8%)

Query: 463 QKEVLESFRGGKVNLLFATD-----VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR- 516
           Q+E + +FR G +NLL AT      V   G  +P C+ VI   LP +++ Y+ S+ R+R 
Sbjct: 765 QEETITNFRRGAINLLVATQAAISTVTTSGTELPRCNLVIALRLPNSLAEYLSSKARSRL 824

Query: 517 -QHNSQFILMLERGNLKQ 533
             + ++ I +++  ++++
Sbjct: 825 VNYGAKVIYLMDHDSIEK 842


>gi|402897212|ref|XP_003911664.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 [Papio anubis]
          Length = 925

 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 146/591 (24%), Positives = 256/591 (43%), Gaps = 73/591 (12%)

Query: 35  PSSSTNSIN----FIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKS 89
           P S  +  N    F  R YQL++   AK+ +NTI    TG GKT+++V++ +   +    
Sbjct: 228 PPSEVSDTNLYSPFKLRNYQLELALPAKKGKNTIICAPTGCGKTLVSVLICEHHLKKFPP 287

Query: 90  NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLV 149
            G K  ++F A  + +  QQ  V   + +       G  G    +    Q  +  ND+++
Sbjct: 288 -GQKGKVVFFANQIPVYEQQESVFSKYFERLGYRVTGISGATAENVPVEQI-VENNDIII 345

Query: 150 MTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKV 203
           +TPQIL++ L+K  + SL +   ++ DECH+ +  HPY  IM  +  +     S   P+V
Sbjct: 346 LTPQILVNNLKKGTIPSLSVFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQV 405

Query: 204 FGMTASPVVRKGVSSAMDCE---GQISELESTLDSQVF-TIED---KTEMEVFVPSA--- 253
            G+TAS     GV  A D +     I +L ++LD+ V  T++D   + E  V+ P     
Sbjct: 406 IGLTASV----GVGDAKDTDEALDYICKLCASLDASVIATVKDNLEELEQVVYKPQKFFR 461

Query: 254 KESCRFYDQSKFCGSDLKGKLEVSWSKF---DASLSKLQGSQLNCYK------------- 297
           K   R  D+ K   + L    E    +      S S++Q  +    K             
Sbjct: 462 KVESRVSDKFKCIIAQLMRDTESLAKRICKDLESFSQIQNREFGTQKYEQWIVTVQKACM 521

Query: 298 --DMDDKHKTLR--KQLSDYHAKILYCLDELGLICAYEAVKICLE--KVLKAQEECEIYR 351
              M DK +  R  K L  Y + +    D L +I  +  VK  L+  K   +      + 
Sbjct: 522 VFQMPDKDEESRICKALFLYTSHLRKYNDAL-IISEHARVKDALDYLKDFFSNVRAAGFD 580

Query: 352 QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGK 411
           ++        EE L  + S       +  D   +  K  DL +I  + + L         
Sbjct: 581 ETEQDLTQRFEEKLQELES-------VSRDPSNENPKLEDLRFILQEEYHL--------- 624

Query: 412 STQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVLES 469
           + + + I+FV+       ++ +++  P L+ L    LTG   T     +T   QK +L++
Sbjct: 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684

Query: 470 FR-GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528
           F+  G  N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+   
Sbjct: 685 FKVNGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSN 744

Query: 529 GNLKQRNKLFDIIRSERSVTDTALSRDP--EACFLKACTYVKTKSYIVEST 577
             + ++ ++   +  E+ + D+ L      EA F +   +++T   ++  +
Sbjct: 745 AGVIEKEQIN--MYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKLIRDS 793


>gi|328716581|ref|XP_003245985.1| PREDICTED: endoribonuclease Dcr-1-like isoform 2 [Acyrthosiphon
           pisum]
          Length = 1489

 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 143/306 (46%), Gaps = 45/306 (14%)

Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
           K Q+E L  FR  + N+L  T V+E G+ +P C+ VI +++P +  SY++S+ RA+  ++
Sbjct: 246 KKQEETLRRFRQRECNVLIGTKVLEAGIDLPRCNLVINYNIPLSYKSYLRSKSRAKTLDA 305

Query: 521 QFILMLER---GNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-----TYVKTKSY 572
            +ILM +     N+  R KL+      + +    LS     C LK       TY    ++
Sbjct: 306 HYILMFDEDATSNILSRLKLY------KDINQMLLSH----CTLKDIDMEKETYADRYNW 355

Query: 573 IV-------ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA----EEAYECE 621
            V       +   A V   +++ L++RYC  LPSD +    PI+K +S     +  + C 
Sbjct: 356 FVTPFKPGKKEDSAFVDMATAIGLVNRYCAKLPSDTFTKLSPIWKTQSVVYENQPMFVCS 415

Query: 622 LTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEP------- 673
           + LP N+P +  I G     + L+K++  LE C +LH  G L+D L P  +E        
Sbjct: 416 IRLPINSPIKHDIHGHPMPCEILAKRIAALEVCRQLHSHGELDDTLQPITKESFHALFNA 475

Query: 674 ------SENNLISKKNESLPGAGTTKRKELHGTTPIRALSG-RWGEKCGVILHAYKFNFA 726
                 +E+ LI    E  P  GT KR++ +      AL+  R  E     L+A   N  
Sbjct: 476 DEVLPDAEDALIPWDTEE-PRPGTNKRRQYYYKRIAEALNDCRPVENKPCHLYAILLNMN 534

Query: 727 CSIVTE 732
           C +  E
Sbjct: 535 CPVPEE 540



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 121/278 (43%), Gaps = 55/278 (19%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S++L+ALT     +  ++ERLE +GDS LKYA++ +L+ T+   HEG+LS  RS  V N 
Sbjct: 1125 SVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQVSNL 1184

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP---------GQLSLRPVPCE----CGVDTLE 1165
             L++LG  +     +  + F+P   W+ P           L    +P        + T +
Sbjct: 1185 NLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEKALINASIPTTLWNMITLPTFK 1244

Query: 1166 VPLDGK-----------FFTQD---TKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVG 1211
             P D +           F  +D   T + V       H  +  K+IADC EALIGAY + 
Sbjct: 1245 DPTDKEIEEVIQQFKVGFSNEDIENTPLFVPYNLVTQHS-IPDKSIADCVEALIGAYLIS 1303

Query: 1212 GGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD--------------I 1257
             G   AL  M WLGI     +  +DD           P +  + D               
Sbjct: 1304 CGARGALLFMSWLGIRV---LPTLDDSKLGYLKPPSSPLLRNVDDPEGELTKLMDGFESF 1360

Query: 1258 ESKIGYEFTVKFLLQEAITHASVQEFY------CYQNL 1289
            E  +GY F  +  L +A+THAS   +Y      CYQ L
Sbjct: 1361 EQHLGYHFQDRSYLLQAMTHAS---YYPNRLTDCYQRL 1395



 Score = 45.1 bits (105), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 12/157 (7%)

Query: 899  NGSVDAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEK 954
            N   D   LKD VV   +  +     + + EI  + + +SPF G+ ++  KTF +Y+  K
Sbjct: 673  NFQPDIDVLKDAVVTPWYRNQEQPQYFYVAEICTHLNPKSPFPGSIEN-YKTFEDYYYLK 731

Query: 955  YGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHMP 1008
            Y + + +  QPLL +  +    N L     N  G     S   +K        Q  + + 
Sbjct: 732  YSLKIQNLEQPLLDVDHTSARLNFLTPRYMNRKGVILPTSSDATKRAKRDNLSQKQI-LV 790

Query: 1009 PELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLR 1045
            PEL      P S+ +    LP ++ R+ +L+LA ++R
Sbjct: 791  PELCNVHLFPASMWRKAVSLPCILYRINALLLADEIR 827


>gi|167046036|gb|ABZ10549.1| dicer 1 [Nematostella vectensis]
          Length = 412

 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 138/308 (44%), Gaps = 56/308 (18%)

Query: 1055 FHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSW 1114
             H  S L+L+ALTT    ++F +ERLE+LGD+ LK AVS  L+  Y    EG+L+ R++ 
Sbjct: 13   LHPDSELLLQALTTKSAGDAFDLERLEMLGDAFLKQAVSIFLYCCYKDGDEGKLTKRKTS 72

Query: 1115 AVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVP---------------CEC 1159
             + N  L+++     L  Y++++  D   W  P   +    P               C+ 
Sbjct: 73   QLSNRALYRVACRLGLPEYLQNTQLDRVSWTTPSLQAAEVEPVGSPGKSQKTASNKRCQS 132

Query: 1160 G---------VDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYV 1210
                      + TLE P   +    D  +         H+ +  K++AD  EALIGAY  
Sbjct: 133  ASRQPENRPEMSTLEKPETAR----DKAL---------HQSIPDKSVADSVEALIGAYLT 179

Query: 1211 GGGLIAALYMMKWLGIDADLEVSLVDD---------CITRASLRSY--VPRI-----NEI 1254
              G   AL+ + WLG+    E  +  D           TR ++  Y   P++      ++
Sbjct: 180  TCGYQGALHFLDWLGVKVLPESPMSTDGPRASSKYSIFTRPTITEYNSNPQVLKRFAVQL 239

Query: 1255 KDIESKIGYEFTVKFLLQEAITHASVQEFY---CYQNLYKHLQHCSTLLLSQITEYVKSF 1311
            +  E++IGYEF+ K  L +A+THAS  +     CYQ L          L++++     + 
Sbjct: 240  QGFENRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYSRNTN 299

Query: 1312 PKPGETTD 1319
              PGE TD
Sbjct: 300  LDPGELTD 307



 Score = 43.5 bits (101), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 29/44 (65%)

Query: 1317 TTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
            + D    ++APK LGD+ ES+ GA+ +D+ ++L   WR++  +L
Sbjct: 368  SNDDEEGIEAPKVLGDIFESVAGAIFLDSGMDLVLTWRVYYRML 411


>gi|119578951|gb|EAW58547.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58, isoform CRA_a [Homo
           sapiens]
          Length = 703

 Score =  111 bits (277), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 137/540 (25%), Positives = 238/540 (44%), Gaps = 75/540 (13%)

Query: 35  PSSSTNSIN----FIPRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS 89
           P S  +  N    F PR YQL++     K +NTI    TG GKT +++++ +   +    
Sbjct: 183 PPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF-P 241

Query: 90  NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLV 149
            G K  ++F A  + +  QQ  V   + +       G  G    +    Q  +  ND+++
Sbjct: 242 QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIII 300

Query: 150 MTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKV 203
           +TPQIL++ L+K  + SL I   ++ DECH+ +  HPY  IM  +  +     S   P+V
Sbjct: 301 LTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQV 360

Query: 204 FGMTASPVV--RKGVSSAMDCEGQISELESTLDSQVF-TIE---DKTEMEVFVPSA---K 254
            G+TAS  V   K    A+D    I +L ++LD+ V  T++   ++ E  V+ P     K
Sbjct: 361 IGLTASVGVGDAKNTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRK 417

Query: 255 ESCRFYDQSKFCGSDLKGKLEVSWSKF---DASLSKLQGSQLNCYK-------------- 297
              R  D+ K+  + L    E    +      +LS++Q  +    K              
Sbjct: 418 VESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMV 477

Query: 298 -DMDDKHKTLR--KQLSDYHAKILYCLDELGLICAYEAVKICLEKV------LKAQEECE 348
             M DK +  R  K L  Y + +    D L +I  +  +K  L+ +      ++A    E
Sbjct: 478 FQMPDKDEESRICKALFLYTSHLRKYNDAL-IISEHARMKDALDYLKDFFSNVRAAGFDE 536

Query: 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS 408
           I +  + + +  L+E+           + +  D   +  K  DL +I  + + L      
Sbjct: 537 IEQDLTQRFEEKLQEL-----------ESVSRDPSNENPKLEDLCFILQEEYHL------ 579

Query: 409 FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLT--GSTTSVDALTPKVQKEV 466
              + + + I+FV+       ++ +++  P L+ L    LT  G T     +T   QK +
Sbjct: 580 ---NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 636

Query: 467 LESFRG-GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           L++F+  G  N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+
Sbjct: 637 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 696


>gi|195143531|ref|XP_002012751.1| GL23778 [Drosophila persimilis]
 gi|194101694|gb|EDW23737.1| GL23778 [Drosophila persimilis]
          Length = 2278

 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 131/527 (24%), Positives = 204/527 (38%), Gaps = 154/527 (29%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1748 SVILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1807

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP---------GQLSLRPVP------------- 1156
             L++LG  ++L  Y+  + F+P   W+ P           L    +P             
Sbjct: 1808 NLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIK 1867

Query: 1157 -------CEC---GVDTLEVPLDGKFFT-QDTKVVVGK--------PCDMGHRWMGSKTI 1197
                   CE      + L +P   +  T Q T V + +         C + +  +   +I
Sbjct: 1868 NLSSVQICEMVREKAEALGLPGSAEQATPQATTVPLDESNDSCNDFSCFIPYNLVSQHSI 1927

Query: 1198 ADCAEALIGAYYVGGGLI-----AALYMMKWLGI------------------------DA 1228
             D + A      +G  LI      AL  M WLG+                        DA
Sbjct: 1928 PDKSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPYSRQPAPASDSERTPGSTTPDA 1987

Query: 1229 DLEVSLVDDCIT-RASLRSYVPR--------INEIKDIESKIGYEFTVKFLLQEAITHAS 1279
               V++     T R+ L  Y P         ++  ++ E+ +GY F  +  L +A+THAS
Sbjct: 1988 KQMVTVYGSWPTPRSPLLHYAPNAERELEHLLSGFEEFEASLGYRFRDRSYLLQAMTHAS 2047

Query: 1280 VQEFY---CYQNL----------------------------------------------- 1289
                    CYQ L                                               
Sbjct: 2048 YTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVR 2107

Query: 1290 ---YKHLQHCSTLLLSQITEYVKSFPKPGETT------------DSGPSMKAPKALGDLL 1334
               +K  +H S  L   I  +V+   + G +             D    ++ PKALGD+ 
Sbjct: 2108 HGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISEEYYLLSEEECDDAEDVEVPKALGDVF 2167

Query: 1335 ESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENC 1392
            ESI GA+ +D+ ++LD VW ++  ++SP +      +P  P+REL+EL      F K   
Sbjct: 2168 ESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEK 2227

Query: 1393 TLKGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
               G  V   +     DV   G   G  R+ + AK  AA   L++L+
Sbjct: 2228 LADGRRVRVTV-----DVFCKGTFRGIGRNYRIAKCTAAKCALRQLK 2269



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 126/525 (24%), Positives = 222/525 (42%), Gaps = 108/525 (20%)

Query: 577  TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ- 631
            TGASV   +++ L+++YC  LPSD +     +++   +E +    Y+  L LP N+P + 
Sbjct: 829  TGASVDLSTAIALVNKYCARLPSDTFTKLTALWRCAQSERSGVTLYQYTLRLPINSPLKH 888

Query: 632  TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSEN 676
             IVG     + L+++L  L+AC +LH++G L+D L P       ++E        EP + 
Sbjct: 889  DIVGLPMTTQTLARRLAALQACVELHKIGELDDQLQPIGKEGFRALEPDWECFELEPEDE 948

Query: 677  NLISKKNESLPGAGTTKRKELHGTTPIRALSGRW-------GEKCGVILHAYKFNFACSI 729
             ++   +E  P  GTTKR++ +     + ++  +       G  C   L+  K    C I
Sbjct: 949  QIVQLSDE--PRPGTTKRRQYY----YKRIASEFCDCRPVAGAPC--YLYFIKLTLQCPI 1000

Query: 730  VTE-------IY------SGFVLLIESELDNDVGNFELELYLVSKTVKATVS-SSGQVHL 775
              E       IY       GF +L    +          ++  S  VK ++  +  +V L
Sbjct: 1001 PEEQNTRGRKIYPPEDAQQGFGILTMKRIPKLSA---FSIFTRSGEVKVSLELAKERVVL 1057

Query: 776  DADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVN 835
              +Q+    C   +F N  F  +    K      F +  + +S  +      ++P     
Sbjct: 1058 TPEQIG---CIN-VFLNYTFTNVLRLQK------FLMLFDPDSTEN---CVFIVPTLKTG 1104

Query: 836  TFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVI 895
            +  +GS +I+W                 FL   Q N   GN+ P ++ P        D  
Sbjct: 1105 SPPEGSKKIDW----------------QFLELIQAN---GNTMP-KSVP--------DEE 1136

Query: 896  HLANGSVDAKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYF 951
             LA    DA+  +D VV+  +      + + + EI  + S  S F G   D+ +TF +Y+
Sbjct: 1137 RLAQ-PFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYY 1192

Query: 952  SEKYGIVLIHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHV 1005
              KYG+ + +  QPLL +  +    N L     N  G     S + +K        Q  +
Sbjct: 1193 FVKYGLTIQNAAQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI 1252

Query: 1006 HMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINC 1050
             + PEL      P S+ ++   LP ++ R+  L+LA  +R++++ 
Sbjct: 1253 -LVPELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSA 1296



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
           L  + Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR 
Sbjct: 556 LEHRRQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARA 615

Query: 518 HNSQFILML 526
             +  ++++
Sbjct: 616 APAYHVILV 624



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 41/211 (19%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F PR +Q+++   A  RNTI  L   + K  IA+ L++++++  + +G  K+ ++L+  V
Sbjct: 15  FTPRDFQVELLAAAYERNTIICLGHRSSKEFIALKLLQELSRRGRRHG--KVSVYLSCQV 72

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN----------DVLVMTPQ 153
            +  +   +  + T                D + WQ++ +             V ++ P+
Sbjct: 73  GIDKEPASIYTMLTHLT-------------DLRVWQEQPDMQTPFAHNWMDYHVSILRPE 119

Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-----KSDNKPKVFGMTA 208
             L  L    L L  V  IV+++CH +     Y +I+  F       +  ++P++ G+ A
Sbjct: 120 GFLCLLVSGELPLTSVELIVLEDCHDSAV---YQRILPIFLDHILPARPADRPRILGL-A 175

Query: 209 SPVVRKGVSSAMDCE-GQISELESTLDSQVF 238
            P+   G      CE  Q+S +  TL+  V 
Sbjct: 176 GPLHSAG------CELQQLSAMLVTLEQNVL 200


>gi|407943766|pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
          Length = 687

 Score =  110 bits (276), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 145/604 (24%), Positives = 263/604 (43%), Gaps = 78/604 (12%)

Query: 44  FIPRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           F PR YQL++     K +NTI    TG GKT +++++ +   +     G K  ++F A  
Sbjct: 3   FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF-PQGQKGKVVFFANQ 61

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           + +  Q   V   + +       G  G    +    Q  +  ND++++TPQIL++ L+K 
Sbjct: 62  IPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIIILTPQILVNNLKKG 120

Query: 163 FL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVV--RK 214
            + SL I   ++ DECH+ +  HPY  IM  +  +     S   P+V G+TAS  V   K
Sbjct: 121 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAK 180

Query: 215 GVSSAMDCEGQISELESTLDSQVF-TIE---DKTEMEVFVPSA---KESCRFYDQSKFCG 267
               A+D    I +L ++LD+ V  T++   ++ E  V+ P     K   R  D+ K+  
Sbjct: 181 NTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 237

Query: 268 SDLKGKLEVSWSKF---DASLSKLQGSQLNCYK---------------DMDDKHKTLR-- 307
           + L    E    +      +LS++Q  +    K                M DK +  R  
Sbjct: 238 AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC 297

Query: 308 KQLSDYHAKILYCLDELGLICAYEAVKICLEKV------LKAQEECEIYRQSSLQCKYFL 361
           K L  Y + +    D L +I  +  +K  L+ +      ++A    EI +  + + +  L
Sbjct: 298 KALFLYTSHLRKYNDAL-IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 356

Query: 362 EEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFV 421
           +E+           + +  D   +  K  DL +I  + + L         + + + I+FV
Sbjct: 357 QEL-----------ESVSRDPSNENPKLEDLCFILQEEYHL---------NPETITILFV 396

Query: 422 ERIIAAKVVERFVKKVPFLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRG-GKVNLL 478
           +       ++ +++  P L+ L    LT  G T     +T   QK +L++F+  G  N+L
Sbjct: 397 KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNIL 456

Query: 479 FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF 538
            AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+     + ++ ++ 
Sbjct: 457 IATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQIN 516

Query: 539 DIIRSERSVTDTALSRDP--EACFLKACTYVKTKSYIVESTGAS---VTTDSSVNLIHRY 593
             +  E+ + D+ L      EA F +   +++T    +  +      V    +  L+ R 
Sbjct: 517 --MYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRK 574

Query: 594 CEML 597
           C+ L
Sbjct: 575 CKAL 578


>gi|402588900|gb|EJW82833.1| hypothetical protein WUBG_06256 [Wuchereria bancrofti]
          Length = 304

 Score =  110 bits (276), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 147/306 (48%), Gaps = 16/306 (5%)

Query: 36  SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS---NGF 92
           +S  +   F PR YQ+++ + A +RN I  L TG+GKT IAV+LIK+    + +   NG 
Sbjct: 5   TSDVDKNFFTPRDYQVELLDKACKRNIIVPLGTGSGKTFIAVLLIKEYTTKLVTPWKNGG 64

Query: 93  KKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMT 151
           K+   FL   V LV QQ   I  HT   V + +G    D W     +   I  ++V V+T
Sbjct: 65  KR-AFFLVDKVSLVEQQAAHIEHHTTLNVGKMHGHLNQDIWSEPAKFDTFIALHEVTVLT 123

Query: 152 PQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEFYHKSD-NKPKVFGMTAS 209
            QI LD L   F ++     I+ DECHH  G+ HPY  IM  +   ++ ++P++ G+TAS
Sbjct: 124 AQIFLDLLDHGFFNMSNAAVIIFDECHHVLGSKHPYRLIMHRYGQLTEVDRPRILGLTAS 183

Query: 210 PVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269
            +  K   S +  E  + +LE  + S + T  D       V  +K   +  +    C   
Sbjct: 184 LISSKIPPSNL--EHLLEKLERIMHSSIETASD------LVCISKYGAKPREYVIMCHDF 235

Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
                E+S  K  ++L  L+   L C +   +     RK + +  ++    L++LG  CA
Sbjct: 236 FCCTCEIS-KKVISTLESLRTFCLKCTEFHPEFDVDPRKPVLEAVSRTKSVLEQLGPWCA 294

Query: 330 YEAVKI 335
           ++  ++
Sbjct: 295 WKLCQV 300


>gi|343176226|gb|AEM00325.1| interferon-induced helicase C domain-containing protein 1 [Gallus
           gallus]
          Length = 1102

 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 144/585 (24%), Positives = 238/585 (40%), Gaps = 103/585 (17%)

Query: 26  SGHDHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIA 84
           SG D A +G +S    +    R YQ++V + A    N I  L TG+GKT +AV + KD  
Sbjct: 385 SGEDEA-EGRASPEPDLTL--RDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHL 441

Query: 85  QAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CWQKE 141
              +    +  +I L   V LV Q    +R   +  ++ +Y   G+   DS+    + + 
Sbjct: 442 DKKRKASEQGKVIVLVNKVPLVEQH---LRKEFNPFLKRWYQVIGLS-GDSELKISFPEV 497

Query: 142 INKNDVLVMTPQILLDALRKAF-----LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196
           + + DV++ T QIL ++L  A      + L     I+IDECHH      Y  IM+ +  +
Sbjct: 498 VKRYDVIICTAQILENSLLNATEEDESVRLSDFSLIIIDECHHTQKEGVYNNIMRRYLKE 557

Query: 197 S--------DNKP-----KVFGMTASPVVRKGVSSAMDCEGQI---------------SE 228
                    +NKP     ++ G+TASP V  G  S    E  I                E
Sbjct: 558 KIKNRKQAKENKPLIPQPQILGLTASPGV-GGARSNSKAEEHILKICANLDACRIMTVKE 616

Query: 229 LESTLDSQV------FTIEDKTEMEVF-------VPSAKESCRFYDQSKFCGSDLKG--- 272
             S L +QV        I D    + F       +   ++ C+ Y +S+F     +    
Sbjct: 617 HASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYCQLYPKSEFGSQPYEQWVI 676

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
           + E   +K +    ++    L  Y D    + T+R   +  H    Y             
Sbjct: 677 REERRAAKEEKRKERVCAEHLKKYNDALQINDTIRMVDAYNHLNNFY------------- 723

Query: 333 VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALP-LADKIFLDFGFDYSKAVD 391
            ++   K  ++ ++ E       +   FL  + H     L  LA K              
Sbjct: 724 KELKRRKTAESDDDEEPLVSKQDETDEFLMRLFHAKKKQLKELARKP------------- 770

Query: 392 LGYISTKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YL 448
             Y + KL +L    +  F K+ +   IIF +   +A  +  ++   P    + +   +L
Sbjct: 771 -EYDNEKLMKLRNTLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFL 829

Query: 449 TGS--TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
            G+   +    +T   Q+EV++ FRGG +NLL AT V EEG+ +  C+ VIR+ L     
Sbjct: 830 IGAGHNSETKPMTQNEQREVIDKFRGGSINLLIATTVAEEGLDIKECNIVIRYGLVTNEI 889

Query: 507 SYIQSRGRARQHNSQFILMLERG---------NLKQRNKLFDIIR 542
           + +Q+RGRAR   S + L+   G         N+ + N ++  IR
Sbjct: 890 AMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYKAIR 934


>gi|302370918|ref|NP_001180567.1| interferon-induced helicase C domain-containing protein 1 [Gallus
           gallus]
 gi|302128865|dbj|BAJ14020.1| melanoma differentiation associated protein-5 [Gallus gallus]
          Length = 1001

 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 142/578 (24%), Positives = 244/578 (42%), Gaps = 89/578 (15%)

Query: 26  SGHDHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIA 84
           SG D A +G +S    +    R YQ++V + A    N I  L TG+GKT +AV + KD  
Sbjct: 284 SGEDEA-EGRASPEPDLTL--RDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHL 340

Query: 85  QAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CWQKE 141
              +    +  +I L   V LV Q    +R   +  ++ +Y   G+   DS+    + + 
Sbjct: 341 DKKRKASEQGKVIVLVNKVPLVEQH---LRKEFNPFLKHWYQVIGLS-GDSELKISFPEV 396

Query: 142 INKNDVLVMTPQILLDALRKAF-----LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196
           + + DV++ T QIL ++L  A      + L     I+IDECHH      Y  IM+ +  +
Sbjct: 397 VKRYDVIICTAQILENSLLNATEEDESVRLSDFSLIIIDECHHTQKEGVYNNIMRRYLKE 456

Query: 197 --------SDNK-----PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS-QVFTIED 242
                    +NK     P++ G+TASP V  G  S    E  I ++ + LD+ ++ T+++
Sbjct: 457 KIKNRKQAKENKPLIPQPQILGLTASPGV-GGARSNSKAEEHILKICANLDACRIMTVKE 515

Query: 243 KTEM----------EVFVPSAKESCRF--------YDQSKFCGSDLKGKLEVSWSKFDAS 284
                         +  +   K    F         D  K+C   L  K E     ++  
Sbjct: 516 HASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYC--QLYPKSEFGSQPYEQW 573

Query: 285 LSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV-----KICLEK 339
           + +    +    K+   K +   + L  Y+   L   D + ++ AY  +     ++   K
Sbjct: 574 VIR---EERRAAKEEKRKERVCAEHLKKYN-DALQINDTIRMVDAYNHLNNFYKELKRRK 629

Query: 340 VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL-PLADKIFLDFGFDYSKAVDLGYISTK 398
             ++ ++ E       +   FL  + H     L  LA K   D              + K
Sbjct: 630 TAESDDDEEPLVSKQDETDEFLMRLFHAKKKQLKELARKPEYD--------------NEK 675

Query: 399 LHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YLTGS--TT 453
           L +L    +  F K+ +   IIF +   +A  +  ++   P    + +   +L G+   +
Sbjct: 676 LMKLRNTLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIGAGHNS 735

Query: 454 SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
               +T   Q+EV++ FRGG +NLL AT V EEG+ +  C+ VIR+ L     + +Q+RG
Sbjct: 736 ETKPMTQNEQREVIDKFRGGSINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARG 795

Query: 514 RARQHNSQFILMLERG---------NLKQRNKLFDIIR 542
           RAR   S + L+   G         N+ + N ++  IR
Sbjct: 796 RARADESTYALVASSGSGAVEREDVNIFRENMMYKAIR 833


>gi|363743602|ref|XP_003642879.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Gallus
           gallus]
          Length = 674

 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 140/528 (26%), Positives = 229/528 (43%), Gaps = 104/528 (19%)

Query: 49  YQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
           YQL+    A R RN+I  L TGAGKT  AV + +   +  +       +  L   VHLV 
Sbjct: 6   YQLEAVAPALRGRNSIVWLPTGAGKTRAAVHVCRRHLEGRRGGR----VAVLVNKVHLVQ 61

Query: 108 Q----QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINK-NDVLVMTPQILLDAL--- 159
           Q    ++ V+R    F+V    G     +   +C+  ++ K +DV++ T QIL +AL   
Sbjct: 62  QHLEKEFHVLR--DAFKVTAVSG-----DSSHKCFFGQLAKGSDVVICTAQILQNALLSG 114

Query: 160 -RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK----SDNKPKVFGMTASPVVRK 214
             +A + L     +VIDECHH      Y KIM  +  K      + P++ G+TASP    
Sbjct: 115 EEEARVELTDFSLLVIDECHHTQKEAVYNKIMLSYLQKKLSGQRDLPQILGLTASP---- 170

Query: 215 GVSSAMDCEG---QISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQSKFCGSD 269
           G       EG    I ++ + LD++V     E    ++  VP   +  + YD    C   
Sbjct: 171 GTGGETSFEGAVEHILQICANLDTEVIASAQEHAQHLQSHVP---QPTKQYD---LCQ-- 222

Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
                E     F   L K+  +Q+  + +M +  +    Q+                   
Sbjct: 223 -----EREQDPFGQRLKKIM-AQIQEHMEMPELPQNFGTQV------------------- 257

Query: 330 YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKI----------- 378
           YE   + LE    A+  C   R  +L  + + + +L  I   + + D             
Sbjct: 258 YEQRIVELEN-RAAERFCRKTRVCALHLRRYNDALL--INDTVRMMDAFQCLQQFYADKR 314

Query: 379 --------FLDFGFDYSKAV------DLGYIS---TKLHELLQLFLSFGKSTQVLCIIFV 421
                   FL   F+ ++A       D  Y +   +KL E+LQ       S++   I+F 
Sbjct: 315 DTKDPTERFLATTFEENRATLQALAGDQRYENPRLSKLEEILQEHFQPPGSSR--GIVFT 372

Query: 422 ERIIAAKVVERFVKKVPFL--THLTVAYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNL 477
           +   +A  +  +++    L   H+  A LTGS  S  A  +T   Q++V+  FR G++NL
Sbjct: 373 KTRQSAHSLLSWLQDTAGLCGQHIRAAVLTGSGHSNQAKGMTQNEQQDVITLFRYGELNL 432

Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           LF+T V EEG+ +P C+ V+R+ L     + +Q++GRAR  NS + ++
Sbjct: 433 LFSTSVAEEGLDIPECNIVVRYGLMTNEIAMVQAQGRARAQNSMYSVL 480


>gi|336252885|ref|YP_004595992.1| helicase domain-containing protein [Halopiger xanaduensis SH-6]
 gi|335336874|gb|AEH36113.1| helicase domain-containing protein [Halopiger xanaduensis SH-6]
          Length = 831

 Score =  110 bits (275), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 135/510 (26%), Positives = 216/510 (42%), Gaps = 81/510 (15%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQL++   A   +T+  L TG GKT +++++    A+ ++  G K L+  LAPT  LV
Sbjct: 24  RLYQLRLAGTAANHHTLVCLPTGLGKTTVSLLVT---ARRLEEVGGKSLM--LAPTKPLV 78

Query: 107 HQQYDVIRVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            Q  D  R      D E+  + G    D+  ++ WQ+      V++ TPQ++ + L  + 
Sbjct: 79  QQHADFYREALQIPDEEIVVFTGDVSPDDR-AETWQEAT----VVMATPQVIENDLVGSR 133

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAM--D 221
           +SL  V  I  DECH ATG++ Y  I  E YH+   KP V GM+ASP    G   A+   
Sbjct: 134 ISLAEVTHITFDECHRATGDYAYNYIA-ERYHEDAKKPLVTGMSASP---GGDEEAILEV 189

Query: 222 CEG-QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280
           CE   + E+E      V T ED                  D S+F         +V W +
Sbjct: 190 CENLGLEEVE------VMTEEDA-----------------DVSEFTHD-----TDVEWER 221

Query: 281 FD---------ASLSKLQGSQLNCYKDM--------DDKHKTLRKQLSDYHAKILYCLDE 323
            D          +L+++   +L   K++        D   K L K  ++    I     E
Sbjct: 222 IDLPDEVLEIRDTLNEVIKERLEKLKELGIASSTQPDQSQKDLNKMRAELQQLINNDQSE 281

Query: 324 LGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC--KYFLEEVLHVIGSALPLADKIFLD 381
                 +E + I  E V+K ++   +    S++   +YF  +      S    A +  + 
Sbjct: 282 -----GFEGMSIHAE-VMKLRQAVTLVETQSVEAVRRYFDRQRNQARSSGASKASQRMVS 335

Query: 382 ---FGFDYSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKV 437
                    KA D   I  K  +   L   + G       I+F E    A+ +  F+ + 
Sbjct: 336 DPRVREAMRKAEDFDEIHPKYRKTRMLLAETLGLEGGERVIVFTESRDTAEALTDFLSE- 394

Query: 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
            F     V    G     D +T   Q+EVL+ FR G+  +L +T V EEG+ VP    V+
Sbjct: 395 SFDAKRFVGQ--GDREGSDGMTQTEQQEVLDEFRAGEFEVLVSTSVAEEGLDVPEVDLVL 452

Query: 498 RFDLPKTVSSYIQSRGR-ARQHNSQFILML 526
            ++   T    IQ +GR  RQ   + ++++
Sbjct: 453 FYEPVPTAIRSIQRKGRTGRQSEGRVVVLM 482


>gi|325185212|emb|CCA19701.1| dicerlike putative [Albugo laibachii Nc14]
          Length = 760

 Score =  110 bits (275), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 8/166 (4%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R +Q  +   A+  N + V +TG GKT +A++L+     +     F     F+APT  LV
Sbjct: 13  RSFQQHILSRARHNNVVMVGDTGIGKTYVAIVLLSQQDYSRNKRAF-----FMAPTRQLV 67

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            Q    IR  T   V  Y  ++  D WD   W++E+  + V V TPQ++ +AL K ++S+
Sbjct: 68  LQIESKIRQITTLPVRAYCSSE-FDYWDEYQWEQELGFHRVFVTTPQVVRNALEKGYISM 126

Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASP 210
             +  +V DECHH +  HPY  IMK +   +  D+KP++FG TA P
Sbjct: 127 KNINLLVFDECHHVSKRHPYAHIMKLYDPNAHPDDKPRIFGATACP 172



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 18/221 (8%)

Query: 464 KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
           K +L+ F+ GK  +L +T V  EG+  P C  ++  D   +    IQ RGRAR ++    
Sbjct: 517 KTILDRFQQGKTRMLVSTSVSVEGVDFPLCGLIVVMDPVTSPRMLIQLRGRARHNDGAIY 576

Query: 524 LMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACF-----------LKACTYVKTKSY 572
            + E G++        ++     +       D +              L+ C +V     
Sbjct: 577 YLGEEGDVMDEVNYKSLLVKAEQINAMNFESDKQETLHNQPRSKSVRDLQTCQFVADDCQ 636

Query: 573 I-VESTGASVTTDSSVNLIHRYCEMLPSDKY-YTPKPIFKYKSAEEA-----YECELTLP 625
           + ++STGA +  DSS + +H++C+ LP   +   P+ +F  +S   A     Y+ +++LP
Sbjct: 637 VAIKSTGAIIDLDSSTSSLHQFCQSLPPLLFDVNPQKLFTIESLTTAHNKQMYKAKVSLP 696

Query: 626 SNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHL 666
           +             +K+L+K +  L AC  L++ G L+D L
Sbjct: 697 NQLGVSACESGLMPSKSLAKAVAALRACRSLYEQGLLDDKL 737


>gi|339892124|gb|AEK21509.1| LGP2 [Gallus gallus]
          Length = 674

 Score =  110 bits (275), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 140/528 (26%), Positives = 229/528 (43%), Gaps = 104/528 (19%)

Query: 49  YQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
           YQL+    A R RN+I  L TGAGKT  AV + +   +  +       +  L   VHLV 
Sbjct: 6   YQLEAVAPALRGRNSIVWLPTGAGKTRAAVHVCRRHLEGRRGGR----VAVLVNKVHLVQ 61

Query: 108 Q----QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINK-NDVLVMTPQILLDAL--- 159
           Q    ++ V+R    F+V    G     +   +C+  ++ K +DV++ T QIL +AL   
Sbjct: 62  QHLEKEFHVLR--DAFKVTAVSG-----DSSHKCFFGQLAKGSDVVICTAQILQNALLSG 114

Query: 160 -RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK----SDNKPKVFGMTASPVVRK 214
             +A + L     +VIDECHH      Y KIM  +  K      + P++ G+TASP    
Sbjct: 115 EEEARVELTDFSLLVIDECHHTQKEAVYNKIMLSYLQKKLSGQRDLPQILGLTASP---- 170

Query: 215 GVSSAMDCEG---QISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQSKFCGSD 269
           G       EG    I ++ + LD++V     E    ++  VP   +  + YD    C   
Sbjct: 171 GTGGETSFEGAVEHILQICANLDTEVIASAQEHAQHLQSHVP---QPTKQYD---LCQ-- 222

Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
                E     F   L K+  +Q+  + +M +  +    Q+                   
Sbjct: 223 -----EREQDPFGQRLKKIM-AQIQEHMEMPELPQNFGTQV------------------- 257

Query: 330 YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKI----------- 378
           YE   + LE    A+  C   R  +L  + + + +L  I   + + D             
Sbjct: 258 YEQRIVELEN-RAAERFCRKTRVCALHLRRYNDALL--INDTVRMMDAFQCLQQFYADKR 314

Query: 379 --------FLDFGFDYSKAV------DLGYIS---TKLHELLQLFLSFGKSTQVLCIIFV 421
                   FL   F+ ++A       D  Y +   +KL E+LQ       S++   I+F 
Sbjct: 315 DTKDPTERFLATTFEENRATLQALAGDQRYENPRLSKLEEILQEHFQPPGSSR--GIVFT 372

Query: 422 ERIIAAKVVERFVKKVPFL--THLTVAYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNL 477
           +   +A  +  +++    L   H+  A LTGS  S  A  +T   Q++V+  FR G++NL
Sbjct: 373 KTRQSAHSLLSWLQDTAGLCGQHIRAAVLTGSGHSNQAKGMTQNEQQDVITLFRYGELNL 432

Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           LF+T V EEG+ +P C+ V+R+ L     + +Q++GRAR  NS + ++
Sbjct: 433 LFSTSVAEEGLDIPECNIVVRYGLMTNEIAMVQAQGRARAQNSMYSVL 480


>gi|432098359|gb|ELK28159.1| Interferon-induced helicase C domain-containing protein 1 [Myotis
           davidii]
          Length = 952

 Score =  110 bits (275), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 146/571 (25%), Positives = 236/571 (41%), Gaps = 66/571 (11%)

Query: 5   LNSLKRSFGEVHSPN----PPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVA-KR 59
           +N L  S G  H+ N       MGS   +      +S    +N  P  YQ++V + A + 
Sbjct: 215 VNCLDESLG--HNSNMGSDSGTMGSDSDEEKKAERASPEPELNLRP--YQMEVAQPALEG 270

Query: 60  RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119
           +N I  L TG+GKT +AV + KD     +       +I L   V LV Q   + R     
Sbjct: 271 KNIIICLPTGSGKTRVAVYIAKDHLDKKRKAAELGKVIVLVNKVPLVEQ---LFRKEFQK 327

Query: 120 EVEEYYGAKGVDEWDSQ---CWQKEINKNDVLVMTPQILLDALRKA------FLSLDIVC 170
            ++++Y    V   D+Q    + K +   D+++ T QIL ++L  +       + L    
Sbjct: 328 FLKKWYCITRVS-GDTQMKISFPKFVKSYDIIISTAQILENSLLNSEKGEDDGVQLSDFS 386

Query: 171 FIVIDECHHATGNHPYTKIMKEFYH--------KSDNKP-----KVFGMTASPVVRKGVS 217
            I+IDECHH      Y  IM+ +          + +NKP     ++ G+TASP V     
Sbjct: 387 LIIIDECHHTNKEAVYNNIMRRYLKQKLKNNKLRKENKPVMPLPQILGLTASPGVGGATK 446

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
            A   E  ++ ++     + F I D T  + F     E         FC  +        
Sbjct: 447 QAKAEEHILTVIQIKEPCKKFVIADDTREDPFKGRLVEI--MTKIQTFCQMNPMPDFGTQ 504

Query: 278 -WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC 336
            + ++   + K    + N    +  +H  LRK     + + L   D + +I AY      
Sbjct: 505 PYEQWTIKMEKKAAREGNRKDRLCTEH--LRK-----YNEALQINDTIRMIDAYNH---- 553

Query: 337 LEKVLKAQEECE--IYRQSSLQCKYFLEEVLHVIGSALPL----ADKIFLDFGFDYSK-- 388
           LE   K + E +  I   S        +          PL     DK  +D  FD  K  
Sbjct: 554 LETFYKDEREKKFAIREDSDESGDNSDDGDEGGNDGKKPLKLDDTDKFLMDLFFDNKKML 613

Query: 389 ---AVDLGYISTKLHELLQLFLSFGKST--QVLCIIFVERIIAAKVVERFVKKVPFLTHL 443
              A +  Y + KL +L    +     T      IIF +   +A  + +++ +      +
Sbjct: 614 KKLAENPEYENEKLTKLRNTIMEQYTRTAGSARGIIFTKTRQSAYALSQWITENEKFAEV 673

Query: 444 TVA--YLTGS--TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
            V   +L G+  ++    +T   QKEV+  FR GK+NLL AT V EEG+ +  C+ VIR+
Sbjct: 674 GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIEECNIVIRY 733

Query: 500 DLPKTVSSYIQSRGRARQHNSQFILMLERGN 530
            L     + +Q+RGRAR   S ++L+   G+
Sbjct: 734 GLVTNEIAMVQARGRARADESTYVLVAHSGS 764


>gi|390342381|ref|XP_782422.2| PREDICTED: interferon-induced helicase C domain-containing protein
            1-like [Strongylocentrotus purpuratus]
          Length = 1213

 Score =  110 bits (275), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 134/561 (23%), Positives = 231/561 (41%), Gaps = 103/561 (18%)

Query: 47   RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVML----IKDIAQAIKSNGFKKLIIFLAP 101
            R YQ+++ +   +  N +    TG+GKT+ A  +    +  + +A K + FK   IF+ P
Sbjct: 495  RGYQVELADPGLQGVNYVICAPTGSGKTITAAYICHTNMMKMKKAGKEDDFK--AIFIVP 552

Query: 102  TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDV--LVMTPQILLDAL 159
            T HL  QQ D  +       + +   +     + Q ++    K +V  L++T Q+L++AL
Sbjct: 553  TRHLKKQQRDGFQ-------DLFVPGQVTSLAEGQMFRDAFEKGNVRVLMITSQVLVNAL 605

Query: 160  RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK----------------------- 196
             +    L  V  +V DECHH T NHPY +IM+ +  +                       
Sbjct: 606  TQNEFKLPEVSMLVFDECHHTTLNHPYNEIMRHYLREKKAVLVQQGVPEEQWPIGQPVGR 665

Query: 197  -SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE 255
                 P+V G+TAS     G  ++ D  G I  L + LDS    I  + E    V   K+
Sbjct: 666  PQGGIPQVVGLTAS----VGTGTSDDAHGHIVTLCANLDSSEVKIVTEPEN---VQEMKQ 718

Query: 256  SCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHA 315
              +  ++ +      K +L    S+F   L  + G         + K   L K   D+ +
Sbjct: 719  CNKTPEEDRIIPVP-KRELTPESSRFIKILETVMG---------EIKENVLNKHQDDFTS 768

Query: 316  KILYCLDELGLICAYE----AVKICLEKVLKAQEECEIYRQ---------SSLQCKYFLE 362
            K +           YE     ++ C E      E C  Y           + L+ K  LE
Sbjct: 769  KGIAFYSPAYGTQEYENWIAKIRACAELRFPNLEICANYLFRLNLALLLYNDLRAKDALE 828

Query: 363  EV----LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTK-----------LHELLQLFL 407
             +    L   G    L D       ++ +   +L  +++K           LHE+++   
Sbjct: 829  SMEIFKLQTKGKQDELRDGRHCRMIYEKN-LQELTELASKENPLSNPKLLCLHEMIKRV- 886

Query: 408  SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL----TVAYLTGSTTSVD-ALTPKV 462
             + K  +   I+      A   +  F+K    L  L        + G +  +D  LT   
Sbjct: 887  -YSKEPESKGIVLARTRFATYALLNFIKDSEELKKLRPPIQPVRIVGQSREIDQGLTLTR 945

Query: 463  QKEVLESFR-------GG---KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
            Q+  L++F+       GG     NLL ATD+++EG+ +P C+ +IR++        +Q++
Sbjct: 946  QEAALDAFKSADQANPGGVTRGANLLVATDIVQEGLDIPACNVIIRYNFVSNEIGTVQAK 1005

Query: 513  GRARQHNSQFILMLERGNLKQ 533
            GRAR+  S+  L++ERG++ +
Sbjct: 1006 GRARKEGSKCYLIVERGSVNE 1026


>gi|242018047|ref|XP_002429494.1| dicer-1, putative [Pediculus humanus corporis]
 gi|212514432|gb|EEB16756.1| dicer-1, putative [Pediculus humanus corporis]
          Length = 2179

 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 148/337 (43%), Gaps = 58/337 (17%)

Query: 408 SFGKSTQVLC-IIFVERIIAAKVVERFVKKV-------PFLT-HLTVAYLTGSTTSVDAL 458
           +FG S   LC +IFVE+   AKV+   +  +        FL    TV  +   T      
Sbjct: 584 NFGDSDVPLCGLIFVEKKFTAKVLFHVLNDLKQADEDFSFLNVQFTVGKVVDGTKDPKGA 643

Query: 459 TPKVQKE--VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516
             + +K+  +L+ FR    NLL  T  +EEG+ +P C+ VIRFD+PK   SYI ++ RAR
Sbjct: 644 ENEHRKQELMLKRFRIRACNLLIGTSFLEEGIELPKCNLVIRFDVPKHYRSYINTKERAR 703

Query: 517 QHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSY---- 572
             NS F L++                 +  V + A   + EA  L+ C +++ +      
Sbjct: 704 AANSLFCLLVGPN------------EKDDFVHELAKYYETEAVLLEKCGHLEPEEEEENE 751

Query: 573 -------------IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE--- 616
                        +++     V   S+V L++RYC  LPSD +    PI   K+ +E   
Sbjct: 752 ADLYTQLVQPFCPLLKRECPHVDLSSAVMLLNRYCAKLPSDTFTRLTPICNIKTVKEFER 811

Query: 617 -AYECELTLPSNAPF-QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEP- 673
             Y C + LP N+P  Q I G     + L+K+    + C+ LH  G L+D L P  +E  
Sbjct: 812 KMYVCTIRLPINSPIKQEIEGCPMPTRVLAKRFAAFQCCQLLHLSGELDDTLQPISKESF 871

Query: 674 ------------SENNLISKKNESLPGAGTTKRKELH 698
                        E   I  ++   P  GTTKR++ +
Sbjct: 872 WIREEGRLTVTNDETEEIVSRDSLEPRPGTTKRRQYY 908



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 95/208 (45%), Gaps = 41/208 (19%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            SLIL+ALT     +  ++ERLE +GDS LKYA++ +L+  Y   HEG+LS  RS  V N 
Sbjct: 1640 SLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCIYENVHEGKLSHLRSKQVSNF 1699

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVP---CECGV-----DTLEVP--- 1167
             L++LG  + L   +  + F+P   W+ P     R +     E GV     +  ++P   
Sbjct: 1700 NLYRLGRKKMLGESMVATKFEPHDNWLPPCYYVPRELERALIEAGVPASHWNRADLPSLK 1759

Query: 1168 -LDGKFFTQDTK---------------VVVGKPC-------------DMGHRWMGSKTIA 1198
             L  +   Q  K               + V  PC              M    +  K+IA
Sbjct: 1760 NLSKEEICQLVKEKGEKLGIVNAEKKPINVTIPCLNLENMPCFIPYNLMTQHSIPDKSIA 1819

Query: 1199 DCAEALIGAYYVGGGLIAALYMMKWLGI 1226
            DC EALIGAY V  G   AL  M WLGI
Sbjct: 1820 DCVEALIGAYLVACGPRGALLFMSWLGI 1847



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDS 1383
             PKALGD+ ES+ GA+ +D+ ++LD VWR++  I+   +      +P  P+REL EL   
Sbjct: 2051 VPKALGDVFESVAGAIFLDSGMSLDAVWRVYYRIMKNEIELFSTNVPKSPIRELFELEPE 2110

Query: 1384 LGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
               F K      G  V   + +  K +     G  R+ + AK  AA   LK+L+
Sbjct: 2111 TAQFGKPEKLADGRRVRVSVEVFGKGIF---NGIGRNYRIAKCTAAKCALKQLK 2161


>gi|258567596|ref|XP_002584542.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237905988|gb|EEP80389.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1055

 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 166/434 (38%), Gaps = 112/434 (25%)

Query: 1010 ELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT-- 1067
            E L    +P SV    +  P+++ RLES ++A +      C   +  IP+ L LEALT  
Sbjct: 624  EALTVSAIPASVAALAFAFPAIISRLESYLIALEA-----CQKLDLSIPAELALEALTKD 678

Query: 1068 TLGCCESFSM------------ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWA 1115
            +    E  +M            ERLE LGD  LK A S  LF   P   E     +R   
Sbjct: 679  SDNTEEHRAMQVHFQRGMGKNYERLEFLGDCFLKMATSISLFTMNPDNDEYDFHVKRMCL 738

Query: 1116 VCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQ 1175
            VCN  L K   + KL  +IR  +F  R W   G L+L               L GK    
Sbjct: 739  VCNQNLFKAALNLKLYEFIRSQSFSRRGWYPEG-LTL---------------LQGK---- 778

Query: 1176 DTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG----LIAALYMMKWLGIDADLE 1231
                   K        +  KTIAD  EALIGA Y+ GG       A+  +      +D  
Sbjct: 779  ----GQSKTAPENKHALADKTIADVCEALIGASYLSGGKSHRFDMAVRAVTVFVNSSDHN 834

Query: 1232 VSLVDDCITRASLRSYVPRINE------IKDIESKIGYEFTVKFLLQEAITHASVQEFY- 1284
            VS   D     +L  Y   +++      +  I+ K+GY+F    LL+ A TH+S    + 
Sbjct: 835  VSDWQDYSKLYALPRYQTAVSDPAEIDLVAQIKEKLGYQFKYPKLLRSAFTHSSYPSAWA 894

Query: 1285 ---CYQN--------------------------------------------------LYK 1291
               CYQ                                                   L+ 
Sbjct: 895  AVPCYQRLEFLGDSLLDMACVEHLYHRYPDKDPQWLTEHKMAMVSNKFLGCVAVKLGLHP 954

Query: 1292 HLQHCSTLLLSQITEYVKSFP----KPGETTDSGPSMK-APKALGDLLESIVGAVLIDTK 1346
            HL+H S  + SQI  YV+       + G++ D+  S    PK L D++E+ +GA+ ID+ 
Sbjct: 955  HLRHFSAPIQSQIATYVEEIEAAELESGDSPDAWTSTSDPPKCLPDMVEAYIGAIFIDSD 1014

Query: 1347 LNLDEVWRIFKPIL 1360
               + V   F+  L
Sbjct: 1015 FRYEVVEDFFERFL 1028



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 163/393 (41%), Gaps = 69/393 (17%)

Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA 457
           +LH+ L  +  F + T   CI+F E+   A+++     K+    +L    L G  +    
Sbjct: 47  RLHQELSKY--FERHTDTKCIVFTEKRHTARILSDLFAKIG-TEYLRPGLLIGVRSDPSG 103

Query: 458 LTP-KVQKEVLE--SFRGGKVNLL---------------------FATDVIEEGMHVPNC 493
            T    ++++LE   FR G+VN L                     FAT V EEG+ +P+C
Sbjct: 104 ATNVSFRQQILEVVKFRNGEVNCLVIYLDMLPVGLLMSTRLIVVKFATSVAEEGLDIPDC 163

Query: 494 SYVIR----------------FDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           + V+R                FDL  T++ YIQSRGRAR  NS F  M+E+ N+  +  +
Sbjct: 164 NLVVRYANHLRMKMLYTEVDRFDLACTLTQYIQSRGRARHVNSTFAHMVEQDNVVHKESV 223

Query: 538 FDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEML 597
             +  SE S          E   +   T+V       E      T  S    + RY    
Sbjct: 224 KYLQSSEVS----------ERSRVNIYTHVNLVLGYYEPILHLFTKGSHPEFLQRYRR-- 271

Query: 598 PSDKYYTPKPIFKYKS-AEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKL 656
           P  +  T   +  Y S ++ A+ CE+ LP  +P + + G  +  K ++KQ    E C  L
Sbjct: 272 PQYEKETSANVNYYHSFSQNAFHCEVVLPEKSPVRGLTGKPASKKLVAKQSAAFETCLLL 331

Query: 657 HQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGV 716
            + G L+DH + +  +     L + +N  L  A ++K+   +       L   W    G 
Sbjct: 332 RKHGLLDDHFVSTYHK----RLPAMRNARL--AISSKKSNQYDMIVKPNL---WQSSRGA 382

Query: 717 I---LHAYKFNFACS-IVTEIYSGFVLLIESEL 745
           I   LHA  FN   +  +   Y   V+L   +L
Sbjct: 383 IPTTLHAVAFNLRPNKALRREYHSLVILTREKL 415


>gi|198428257|ref|XP_002120168.1| PREDICTED: similar to Ddx58 protein [Ciona intestinalis]
          Length = 926

 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 136/512 (26%), Positives = 212/512 (41%), Gaps = 55/512 (10%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQL++ E A +  N++ V  TG GKT++A  +     + ++ N   K I+FL P V L
Sbjct: 262 RNYQLELAEQALQGNNSLIVAPTGTGKTLVAQHIC---TEHLRRNPNSK-IVFLVPRVVL 317

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V QQ+D       +E +        +   +      I  + +  MTPQIL + L K    
Sbjct: 318 VEQQHDAFDSQMKYE-QGMLCKISSENTTNAAPNFLIMGHKITFMTPQILFNYLEKDCDF 376

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-------PKVFGMTASPVVRKGVSS 218
           ++ +  ++ DECHHA    PY  IMK  YH +  K       P+V GMTASP V  G  S
Sbjct: 377 INELGLLIYDECHHAMKGDPYNSIMK-VYHDNLTKYNGAKPLPQVIGMTASPGV-GGAKS 434

Query: 219 AMDCEGQISELESTLD---SQVFTIEDKTEMEVFVPSAKESCRFYDQSKF-CGSDLKGKL 274
                  I  L + L+   + V  IE+K E+           R  D+ K     ++   +
Sbjct: 435 VQAATQHIKRLLANLNVTTAPVEVIENKKELGKHTTETTCEIRRIDRKKTQFQENMVTLI 494

Query: 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334
              W        K +    N  KD+D    T  K      A   +C+            K
Sbjct: 495 NKIWENLKIEFEKAE----NEVKDID----TNLKAKPGTQAFEAWCVQLRESSSTLRNDK 546

Query: 335 ICLEKVLKAQEECEIYRQ------------SSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
           +      + QE  +  R+            S+  C Y  +   +   + +P  +++  D+
Sbjct: 547 LS----QRLQEYAQHLREYNNSLMIDYDLTSTEACDYVTQFWCNACTTVVPELEQLHEDY 602

Query: 383 GFDYSKAVDLGYISTKLHELLQL-FLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFL 440
                +      I  KL E+L   F+ F +S    CIIFV  R IA  +V   ++     
Sbjct: 603 A--PKREYHTSPILRKLFEILTAEFVDFPESK---CIIFVRTRCIAKALVTCLMED---F 654

Query: 441 THLTVAYLTGSTTSV--DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
             L    LTG   S     +T   Q++ + SFR G   ++ AT V EEG  +P C+ VI 
Sbjct: 655 YDLKPKQLTGVGASAGDGGMTRVEQEDTISSFRDGSTKIIVATSVAEEGFDIPACNLVIA 714

Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILMLERGN 530
           ++       ++Q +GR R   S+  L+   G+
Sbjct: 715 YNYSTNEIGHVQRQGRGRAKESKMFLLAYEGS 746


>gi|260809268|ref|XP_002599428.1| hypothetical protein BRAFLDRAFT_249510 [Branchiostoma floridae]
 gi|229284706|gb|EEN55440.1| hypothetical protein BRAFLDRAFT_249510 [Branchiostoma floridae]
          Length = 613

 Score =  110 bits (274), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 130/538 (24%), Positives = 233/538 (43%), Gaps = 73/538 (13%)

Query: 35  PSSSTNSINFIP-RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGF 92
           P    + +  IP R YQ+++ E A + RNTI    TG+GKT +A+ + +D  +       
Sbjct: 9   PPPEQSELKDIPMRGYQMELAEPALEGRNTIICAPTGSGKTRVAIKITRDHLEVGAGVEA 68

Query: 93  KKLIIFLAPTVHLVHQQYDVIR--VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVM 150
           ++ ++FL   + LV QQ +  R  +   +++    G    D    +     +   DV+++
Sbjct: 69  RRRVVFLVNKMPLVEQQCNAFREYLSPKYDILPLSGETTADIPVGET----LPDYDVIIL 124

Query: 151 TPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKVF 204
           T Q+L +ALR   ++LD    ++ DECHH   N PY  IM  +  +   +      P++ 
Sbjct: 125 TAQVLENALRDELITLDTFSMLIFDECHHCQKNDPYNAIMTRYIKQKVERKSSISLPQII 184

Query: 205 GMTASPVVRKGVSSAMDCEGQI---SELESTLDSQVFTIEDKTEMEVFVPSAKESCR--- 258
           G+TAS  V K        E  +   + L++   SQV  +E K E++ +     E  +   
Sbjct: 185 GLTASLGVGKAKGQKEAVEHILRACANLDAEWISQV--VEHKEELQKYNQKPDEEVKPVS 242

Query: 259 ------FYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYK----DMDDKHKTLR- 307
                 F D       D++  L +     +A L      +   Y+    ++  K  TLR 
Sbjct: 243 GRSEDPFADMINMIMEDIEKTLAI-----EADLKPPSQREKQAYEQWVVNLARKGATLRD 297

Query: 308 KQLSD-YHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLH 366
           K++S   HA   +      L   ++A+ I            +   + +LQ   +LE+   
Sbjct: 298 KKVSRAIHAATTH------LRKYFDALAI----------NADARTKDALQ---YLEKF-- 336

Query: 367 VIGSALPLADKIFLDFGFDYSKA--------VDLGYISTKLHELLQLFL-SFGKSTQVLC 417
           V G      D   +D    +++A         D  Y + KL +L  + L ++ +     C
Sbjct: 337 VTGLQKEGFDGTDVDLVKHFTEAKERLQECAADPKYSNPKLDQLKYMILQAYEEKPDSRC 396

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYL--TGSTTSVDALTPKVQKEVLESFRGGKV 475
           ++F +       +  ++++   L  L    L   G++ S   +T   Q E+LE F  G  
Sbjct: 397 LLFCKTRALTIALLTWMQEDQALRKLNPGRLVGAGASESTGGMTQNQQVELLELFTTGGH 456

Query: 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER--GNL 531
            ++ +T V EEG+ +  C++V R+D        +Q+RGR R   S+ +L+  R  GN+
Sbjct: 457 KIVISTSVAEEGIDIAKCNFVFRYDYVGNEIGKVQTRGRGRAEGSKSVLIAGREGGNV 514


>gi|76624102|ref|XP_580928.2| PREDICTED: probable ATP-dependent RNA helicase DDX58 isoform 1 [Bos
           taurus]
 gi|297477666|ref|XP_002689526.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 [Bos taurus]
 gi|296484925|tpg|DAA27040.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Bos taurus]
          Length = 942

 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 141/541 (26%), Positives = 245/541 (45%), Gaps = 74/541 (13%)

Query: 46  PRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           PR YQL++     K +NTI    TG GKT +++++ +   +        K+++F A  V 
Sbjct: 241 PRNYQLELALPAQKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGRKGKVVVF-AVQVP 299

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAK--GV--DEWDSQCWQKEINKNDVLVMTPQILLDALR 160
           L  QQ  V       E  E +G K  G+  +  D+   ++ +  ND++++TPQIL+++L+
Sbjct: 300 LYEQQKSVFS-----EYFERFGYKVSGISGETADNISVEQIVENNDIIILTPQILVNSLK 354

Query: 161 KAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRK 214
              + SL I   ++ DECH+   +HPY  IM  +  +     SD+ P+V G+TAS  V  
Sbjct: 355 DGTIPSLSIFTLMIFDECHNTNKHHPYNMIMFHYLDQKLGGSSDSLPQVIGLTASVGVGD 414

Query: 215 GVSSAMDCEGQISELESTLDSQVFTI--EDKTEME--VFVPSA---KESCRFYDQSKFCG 267
             ++A   E  I +L ++LD+ V T   ++  E+E  V+ P     K   R  D+ K   
Sbjct: 415 AKNTAEATE-YICKLCASLDTAVVTTVRDNLEELEEVVYKPQKFFRKVESRTTDRFKRII 473

Query: 268 SDLKGKLE-VSWSKFD-------ASLSKLQGSQLNCYK---------------DMDDKHK 304
           S L  + E ++ S F+        +LS++Q       K                M DK +
Sbjct: 474 SQLMAETEALAKSIFEELGTVTLENLSRIQNRNFGTQKYEQWIIAVQKACMVFQMPDKEE 533

Query: 305 TLR--KQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ---CKY 359
             R  K L  Y + +    D L +I     +K  L  +    +        +++    + 
Sbjct: 534 ESRICKALFLYTSHLRKYNDAL-IINEDARMKDALNYLKNFFKNVRAAGFDAIEQDLTQR 592

Query: 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCII 419
           F E++L + G        I +D   + +K  DL +I       LQ        T+ +  +
Sbjct: 593 FEEKLLELEG--------ISMDPSNENAKLKDLCFI-------LQEEYHLNPETRTILFV 637

Query: 420 FVERIIAAKVVERFVKKVPFLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRGGK-VN 476
               ++ A  ++ ++++ P L+ L    LT  G T     +T   QK  L++FR  +   
Sbjct: 638 KTRALVDA--LKNWIEENPKLSFLKPGILTGRGRTNQTMGMTLPAQKCALDAFRTNRDSK 695

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           +L AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+    ++ ++ K
Sbjct: 696 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNADVIEKEK 755

Query: 537 L 537
           L
Sbjct: 756 L 756


>gi|354459477|pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
          Length = 696

 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 145/604 (24%), Positives = 263/604 (43%), Gaps = 78/604 (12%)

Query: 44  FIPRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           F PR YQL++     K +NTI    TG GKT +++++ +   +     G K  ++F A  
Sbjct: 12  FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF-PQGQKGKVVFFANQ 70

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           + +  Q   V   + +       G  G    +    Q  +  ND++++TPQIL++ L+K 
Sbjct: 71  IPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIIILTPQILVNNLKKG 129

Query: 163 FL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVV--RK 214
            + SL I   ++ DECH+ +  HPY  IM  +  +     S   P+V G+TAS  V   K
Sbjct: 130 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAK 189

Query: 215 GVSSAMDCEGQISELESTLDSQVF-TIE---DKTEMEVFVPSA---KESCRFYDQSKFCG 267
               A+D    I +L ++LD+ V  T++   ++ E  V+ P     K   R  D+ K+  
Sbjct: 190 TTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 246

Query: 268 SDLKGKLEVSWSKF---DASLSKLQGSQLNCYK---------------DMDDKHKTLR-- 307
           + L    E    +      +LS++Q  +    K                M DK +  R  
Sbjct: 247 AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC 306

Query: 308 KQLSDYHAKILYCLDELGLICAYEAVKICLEKV------LKAQEECEIYRQSSLQCKYFL 361
           K L  Y + +    D L +I  +  +K  L+ +      ++A    EI +  + + +  L
Sbjct: 307 KALFLYTSHLRKYNDAL-IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 365

Query: 362 EEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFV 421
           +E+           + +  D   +  K  DL +I  + + L         + + + I+FV
Sbjct: 366 QEL-----------ESVSRDPSNENPKLEDLCFILQEEYHL---------NPETITILFV 405

Query: 422 ERIIAAKVVERFVKKVPFLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRG-GKVNLL 478
           +       ++ +++  P L+ L    LT  G T     +T   QK +L++F+  G  N+L
Sbjct: 406 KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNIL 465

Query: 479 FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF 538
            AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+     + ++ ++ 
Sbjct: 466 IATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQIN 525

Query: 539 DIIRSERSVTDTALSRDP--EACFLKACTYVKTKSYIVESTGAS---VTTDSSVNLIHRY 593
             +  E+ + D+ L      EA F +   +++T    +  +      V    +  L+ R 
Sbjct: 526 --MYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRK 583

Query: 594 CEML 597
           C+ L
Sbjct: 584 CKAL 587


>gi|57997555|emb|CAI46068.1| hypothetical protein [Homo sapiens]
          Length = 703

 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 137/540 (25%), Positives = 238/540 (44%), Gaps = 75/540 (13%)

Query: 35  PSSSTNSIN----FIPRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS 89
           P S  +  N    F PR YQL++     K +NTI    TG GKT +++++ +   +    
Sbjct: 183 PPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF-P 241

Query: 90  NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLV 149
            G K  ++F A  + +  QQ  V   + +       G  G    +    Q  +  ND+++
Sbjct: 242 QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIII 300

Query: 150 MTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKV 203
           +TPQIL++ L+K  + SL I   ++ DECH+ +  HPY  IM  +  +     S   P+V
Sbjct: 301 LTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQV 360

Query: 204 FGMTASPVV--RKGVSSAMDCEGQISELESTLD-SQVFTIE---DKTEMEVFVPSA---K 254
            G+TAS  V   K    A+D    I +L ++LD S + T++   ++ E  V+ P     K
Sbjct: 361 IGLTASVGVGDAKNTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRK 417

Query: 255 ESCRFYDQSKFCGSDLKGKLEVSWSKF---DASLSKLQGSQLNCYK-------------- 297
              R  D+ K+  + L    E    +      +LS++Q  +    K              
Sbjct: 418 VESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMV 477

Query: 298 -DMDDKHKTLR--KQLSDYHAKILYCLDELGLICAYEAVKICLEKV------LKAQEECE 348
             M DK +  R  K L  Y + +    D L +I  +  +K  L+ +      ++A    E
Sbjct: 478 FQMPDKDEESRICKALFLYTSHLRKYNDAL-IISEHARMKDALDYLKDFFSNVRAAGFDE 536

Query: 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS 408
           I +  + + +  L+E+           + +  D   +  K  DL +I  + + L      
Sbjct: 537 IEQDLTQRFEEKLQEL-----------ESVSRDPSNENPKLEDLCFILQEEYHL------ 579

Query: 409 FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEV 466
              + + + I+FV+       ++ +++  P L+ L    LTG   T     +T   QK +
Sbjct: 580 ---NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 636

Query: 467 LESFRG-GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
           L++F+  G  N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+
Sbjct: 637 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 696


>gi|344313229|gb|AEN04474.1| probable ATP-dependent helicase LGP2 [Carassius auratus]
          Length = 680

 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 129/520 (24%), Positives = 226/520 (43%), Gaps = 59/520 (11%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V + A K  N+I  L TG GKT  AV + K   +  ++      +  L   VHL
Sbjct: 6   RSYQEEVVQAALKGENSIIWLPTGGGKTRAAVYVAKKHLETTRNAK----VAVLVNKVHL 61

Query: 106 VHQQYDVIRVHTDFEVEEYYG------AKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
           V Q       H + E   Y G      A   D  D   + + +  +D+++ T QIL +AL
Sbjct: 62  VDQ-------HFNNEFNPYLGKAYRVKAISGDSSDKDLFGRLVKDSDLIICTAQILENAL 114

Query: 160 RKA----FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPV 211
             +     + L     ++IDECHH      Y KIM  +  K   K    P+V G+TASP 
Sbjct: 115 NSSEEEKHVELTDFSLLIIDECHHTQKESVYNKIMGRYVEKKVRKERKLPQVLGLTASPG 174

Query: 212 VRKGVSSAMDCEGQISELESTLDSQVFTIED-KTEMEVFVPSAKESCRFYDQSKF--CGS 268
                + A   E  + ++ + LDS + + ++  ++++  VP  ++     ++      G 
Sbjct: 175 TGGNKTLAKAVE-HVLQICANLDSVIVSTKNYASKLKEVVPRPRKQYDIVEKRALDPFGD 233

Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRK-QLSDYHAKILYCLDELGLI 327
            LK  + +      +++S                 ++LR+    DY A ++  L++ G+ 
Sbjct: 234 HLKLMMSLIHEFMPSTVS-----------------RSLREVGTQDYEADVVE-LEKTGVK 275

Query: 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKY-FLEEVLHVIGSALPLADKIFLDFGFDY 386
                +  C   + +  +   I+    +   +  L+E  +   + L      FL   FD 
Sbjct: 276 EENRLITQCALHLRQYNDALLIHDTVRMVDAFNVLDEFYNSRSNKLLDGTDFFLQGLFDE 335

Query: 387 SK------AVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
           ++      A+D  Y + KL +L +  L  F ++     IIF +       +  +V     
Sbjct: 336 NRVELKQLALDARYENPKLAQLQRTLLKEFKENKMSRGIIFSKTRRGTHCLYDWVNANHE 395

Query: 440 LTHLTVA--YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
           L  + ++   LTG+ T V+ +    QK  ++ FR G +NLL +T V EEG+ +  C+ V+
Sbjct: 396 LQKVKISAGILTGTGTGVNHMNQNKQKNTIKDFRLGHLNLLISTSVAEEGLDIAECNLVV 455

Query: 498 RFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           R+ L     +  Q+ GRAR  NS + ++ E G  + R + 
Sbjct: 456 RYGLLTNEIAQQQASGRARALNSVYSVVAEEGGRELRREF 495


>gi|307638596|gb|ACY78116.2| RNA helicase LGP2 [Ctenopharyngodon idella]
          Length = 680

 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 129/520 (24%), Positives = 226/520 (43%), Gaps = 59/520 (11%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V + A K  N+I  L TG GKT  AV + K   +  ++      +  L   VHL
Sbjct: 6   RSYQEEVVQAALKGENSIIWLPTGGGKTRAAVYVAKKHLETTRNAK----VAVLVNKVHL 61

Query: 106 VHQQYDVIRVHTDFEVEEYYG------AKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
           V Q       H + E   Y G      A   D  D   + + +  +D+++ T QIL +AL
Sbjct: 62  VDQ-------HFNNEFNPYLGKAYRVKAISGDSSDKDLFGRLVKDSDLIICTAQILENAL 114

Query: 160 RKA----FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPV 211
             +     + L     ++IDECHH      Y KIM  +  K   K    P+V G+TASP 
Sbjct: 115 NSSEEEKHVELTDFSLLIIDECHHTQKESVYNKIMGRYVEKKVRKERKLPQVLGLTASPG 174

Query: 212 VRKGVSSAMDCEGQISELESTLDSQVFTIED-KTEMEVFVPSAKESCRFYDQSKF--CGS 268
                + A   E  + ++ + LDS + + ++  ++++  VP  ++     ++      G 
Sbjct: 175 TGGNKTLAKAVE-HVLQICANLDSVIVSTKNYASKLKEVVPRPRKQYDIVEKRALDPFGD 233

Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRK-QLSDYHAKILYCLDELGLI 327
            LK  + +      +++S                 ++LR+    DY A ++  L++ G+ 
Sbjct: 234 HLKLMMSLIHEFMPSTVS-----------------RSLREVGTQDYEADVVE-LEKTGVK 275

Query: 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKY-FLEEVLHVIGSALPLADKIFLDFGFDY 386
                +  C   + +  +   I+    +   +  L+E  +   + L      FL   FD 
Sbjct: 276 EENRLITQCALHLRQYNDALLIHDTVRMVDAFNVLDEFYNSRSNKLLDGTDFFLQGLFDE 335

Query: 387 SK------AVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
           ++      A+D  Y + KL +L +  L  F ++     IIF +       +  +V     
Sbjct: 336 NRVELKQLALDARYENPKLAQLQRTLLKEFKENKMSRGIIFSKTRRGTHCLYDWVNANHE 395

Query: 440 LTHLTVA--YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
           L  + ++   LTG+ T V+ +    QK  ++ FR G +NLL +T V EEG+ +  C+ V+
Sbjct: 396 LQKVKISAGILTGTGTGVNHMNQNKQKNTIKDFRLGHLNLLISTSVAEEGLDIAECNLVV 455

Query: 498 RFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           R+ L     +  Q+ GRAR  NS + ++ E G  + R + 
Sbjct: 456 RYGLLTNEIAQQQASGRARALNSVYSVVAEEGGRELRREF 495


>gi|302694007|ref|XP_003036682.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8]
 gi|300110379|gb|EFJ01780.1| hypothetical protein SCHCODRAFT_102832, partial [Schizophyllum
            commune H4-8]
          Length = 1489

 Score =  109 bits (272), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 300/1399 (21%), Positives = 517/1399 (36%), Gaps = 267/1399 (19%)

Query: 147  VLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKE----FYHKSDNKPK 202
            +L +TPQ  LD L  +  ++     I+I E    T NH  T+ ++E    FY  S   P 
Sbjct: 167  ILPLTPQNFLDELSSSAFAITQAQAIIIPEPQ--TFNHEATQALEEIIDDFYRPS--APS 222

Query: 203  VFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ 262
            +  +  + VVR      +  + QI  LE  L+ +     D     V          +Y+ 
Sbjct: 223  LRPLILATVVRTS-RPWLSFDQQIIALEHLLECKTHGFTDNLRQAVVPNHPVTEVVYYEP 281

Query: 263  S-KFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRK---QLSDYHAKIL 318
            + +   + L  KL  + S           +   C   +    + LR      ++Y+  +L
Sbjct: 282  APQPPDTPLITKLREACSP----------APTLCEPYIRRARRILRDLGPAAANYY--LL 329

Query: 319  YCLDELGLICAYEA-VKICLEKVLKA-QEECEIYRQSSLQCKYFLEEVLHVIGSALPLAD 376
               D+L L    +A  K   E+ +K    E     ++S Q    +++ L V+        
Sbjct: 330  QAKDDLKLAVIEDAPSKTAREQAVKLLTNEARPNLRASGQLTSKIQQFLDVV-------- 381

Query: 377  KIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436
            +   + G D+ + +  G   +     L + +S+ K+ + +C   V  +IA    E +   
Sbjct: 382  RTEYEQGTDHFRGLAFG---SYYDPELVVVVSY-KTPRTVCSDHVAHLIAYIANEMY--- 434

Query: 437  VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496
                  L    +TG+      ++      +   +  GK  LL AT+   + M     S V
Sbjct: 435  ----HALQARVITGNVDRTTLVS------IFRDYDMGKTKLLIATESAMD-MDFTRASLV 483

Query: 497  IRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDP 556
            ++ DL  + +SY  S   +   + + +L+  +G    R  +  +++ E +++  A +   
Sbjct: 484  VQLDLFDSYASYAYSMAHS---SKRLVLLAAQGKPIHRRTVEGLMQQEDALSKWAKTLTT 540

Query: 557  EACFLKACTYV-----KTKSYI------------VESTGASVTTDSSVNLIHRYCEMLPS 599
            ++  +   + +     KT+  +              +TG  +     V  +  Y   L  
Sbjct: 541  KSILIPPISSLLEEPSKTRRVLENEEAEKDSVLTCAATGGYMNPHDVVKAVCAYAATLHV 600

Query: 600  DKYYTPKPIFKYKSAEE-AYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQ 658
               +T     + +  E   + C + LP  +P   + GP + ++  +++  C  AC  L++
Sbjct: 601  AHNFTVLETHRTRQTERVGFICTVHLP-GSPASEVEGPVAPSRWEARRAACALACTVLYK 659

Query: 659  VGALNDHLLPSVEEPSENNLI-SKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVI 717
               ++         P E  L  SK     PG    +RK          +S R  +K GV 
Sbjct: 660  HSVIDSRYFRHHRIPGEGALTYSKPTGGAPGTTFARRK-----AAFWKISARTPQKEGV- 713

Query: 718  LHAYKFNFAC--SIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHL 775
               Y     C      E Y   +LL    L  D+    + +Y V    +  V  +  + L
Sbjct: 714  ---YPIVIECVERDGPERYRPLLLLTRHPLP-DLPT--IRVYEVPNVREVRVRRAKPLDL 767

Query: 776  DADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVN 835
            D  Q      + E     +  K    + +SG          + LW+ + +     L    
Sbjct: 768  DDAQQDLLARYTERIVRAVLNKEL--TCASG----------DMLWTVAPLQAGWRLPSGE 815

Query: 836  TFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVI 895
            +  D S  I+W+G+   ASV E                          P K G   +   
Sbjct: 816  SSFDVSSGIDWAGME--ASVAELY-----------------------VPIKRGSPDELAT 850

Query: 896  HLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESP----------FDGNTDDDSK 945
            H+ +G V  +   +M       G    +  +  +  A+SP          F  +   D K
Sbjct: 851  HMEDGVVQGRR-SEMTRRYFFMGVRRDLTPL--SKPADSPREALYENIFEFARSASRDLK 907

Query: 946  TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHV 1005
            T  ++             QPL+ +++    HN L         G   K  +  K      
Sbjct: 908  TLEDF------------NQPLIEVERIPQAHNCLTLMQ-----GPPDKGDVPAK------ 944

Query: 1006 HMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEA 1065
            +M PEL  ++ +P SV+++  LLPSV+ R++ + L     +E+N    N  I   L+  A
Sbjct: 945  YMIPELCFKITIPASVMRTALLLPSVLTRIDEIFLV----KELNAIHFNHIIAEDLLHAA 1000

Query: 1066 LTTLGCCESFSMERLELLGDSVLKYAVSCHLF-LTYPKKHEGQLSARRSWAVCNSTLHKL 1124
            LTT       + ERLEL GD+ LKY  S HLF +++    EG+L A R   + N  L + 
Sbjct: 1001 LTTPSAGFDRNYERLELYGDAFLKYLASLHLFVMSHHNDSEGKLHAARRPLISNQKLMEC 1060

Query: 1125 GTDRKLQGYIRDSAFDPRRW------VAP-------------GQLSLRPVPCECGVDTLE 1165
                 L  ++    F  R W      + P             G+++  P P    V   +
Sbjct: 1061 SLALGLPSFVIGKPFVIRFWGPANFRMNPPGGSAEKGKEKEQGKVAETPPPASDAVGANQ 1120

Query: 1166 VPLDGKFFTQDTKVVVGKPCD-MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWL 1224
               +G    +  K   G+P D    + +  K +AD  EA++GA ++  G    L + K L
Sbjct: 1121 G--EGGGGKKRRKKKKGEPNDGQIQQMLSDKALADVVEAILGAAHLSAGRDGGLQVAKAL 1178

Query: 1225 GIDADLEVSLVDDCITRASLRSYVP------RINEIKDIESKIGYEFTVKFLLQEAITHA 1278
            G+       + DD   + S+ +  P      R   I  ++S IG +     LL  A+THA
Sbjct: 1179 GLPVAKNADIWDDFKAQVSMHA-TPSAVSFLRPGTIDGVQSVIGQKLNKPELLALALTHA 1237

Query: 1279 SVQ---------EF------------YCYQ------------------------------ 1287
            +           EF            Y Y+                              
Sbjct: 1238 NNSSPLGNYERIEFLGDALLDFQVVEYVYRKYTQQPPSVLTLLKSAMVGNSPLAAICAES 1297

Query: 1288 NLYKHLQHCSTLLLSQITEYVKSFPKPGE----TTDSGPSMKAP---KALGDLLESIVGA 1340
             LY+HL   S  +   I  Y+ +  K  +      D     +      AL D++ESIVGA
Sbjct: 1298 GLYRHLHQKSHQIQQSINTYLTALQKAKQKEYAAADDDLRERGQYWFDALSDIVESIVGA 1357

Query: 1341 VLIDTKLNLDEVWRIFKPILSPI----VTPDKLELPPLRELIELCDSLGYFVKENCTLKG 1396
            + I   L    V ++FK  L P     +  + L + P + L+EL       V+  C  K 
Sbjct: 1358 IYISDDLEWTGVQQLFKHFLQPFYEKHIRMNTLAVHPTKILLEL-------VQSQCCHKL 1410

Query: 1397 EMVHAELRLQLK-DVLLVG 1414
            E+V +    Q + +VLL G
Sbjct: 1411 ELVKSASAGQTQCNVLLHG 1429


>gi|159473675|ref|XP_001694959.1| dicer-like protein [Chlamydomonas reinhardtii]
 gi|158276338|gb|EDP02111.1| dicer-like protein [Chlamydomonas reinhardtii]
          Length = 1927

 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 102/208 (49%), Gaps = 20/208 (9%)

Query: 47  RIYQLKVFEVAKRR-NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ ++  +A+R  +T+   ETG GKT IAV  I +    + + G  +L  FLAPTV L
Sbjct: 9   REYQAELLRMARRHASTVIYAETGTGKTRIAVERILEAHGELVAAG--RLAAFLAPTVPL 66

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V QQ +V+ V     V  Y G    D  +   WQ+   + DVL  TP  L   +  AF++
Sbjct: 67  VRQQAEVL-VAAGLRVVVYTGEDNRDARNRAGWQRLHQEADVLCATPDALNRLIAHAFIT 125

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYH---KSDNKPKVFGMTASPVVRKGVSSAMDC 222
           +  +  IV DECHH   NHPY  +++ F       D +P + G+TASP            
Sbjct: 126 IPQLGMIVFDECHHTNANHPYAVLLRVFVRHLTPPDQRPVLLGLTASP------------ 173

Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFV 250
             +  EL   L +Q+    +  +++ F+
Sbjct: 174 -HKADELMRLLGAQMVAASNTAQLQTFM 200



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 24/273 (8%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTV--AYLTGST-----TSVDALTPKVQKEVLES 469
            ++F +R +A   + R + ++P      +  A   G+T      S  A+  + Q+ V  +
Sbjct: 605 AMVFCQRKVACVALHRLLTELPAARGGAIRPAVFMGNTGAGHSASSLAMDGRKQERVRRA 664

Query: 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG 529
           F  G +N+L +T V  EG+    C+ VI  D P  V+ ++Q  GRAR   S ++L     
Sbjct: 665 FSSGALNVLISTSVGAEGLDFRTCNAVIMVDPPDHVTPFVQCAGRARAPGSCYLLFAR-- 722

Query: 530 NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYI-------VESTGASVT 582
           + +Q+  +    R E  +   AL     A   +A    +T   +       V+     + 
Sbjct: 723 DDRQQQAIAKRSREEADMVAKALKLS-TAAAREAQQRQQTDPPVNPFFSQDVDVVTEELQ 781

Query: 583 TDSSVNLIHRYCEMLPSDKY-YTPKPIFKYKSAE------EAYECELTLPSNAPFQTIVG 635
            +   NL+  YC  LP +      +P + Y+  E      +A+   + +P+N+P   + G
Sbjct: 782 QNLFRNLLESYCRTLPGNSGDVLLQPYYSYQEYESPLTRRKAFVATVHMPANSPLGVVEG 841

Query: 636 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
           P   NK  ++Q  C+    +L+++GAL++HLLP
Sbjct: 842 PMQSNKGDARQHACMATVRRLYELGALDEHLLP 874



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 33/142 (23%)

Query: 1074 SFSMERLELLGDSVLKYAVSCHLFLT---YPKKHEGQLSARRSWAVCNSTLHKLGTDRKL 1130
            +F  ERLE LGD+VLKY  + +++ T    P  HEG +S +R   V N  L+    +  L
Sbjct: 1398 AFDCERLETLGDAVLKYLATLYVYGTERDVPVSHEGVMSYKRDQLVANEALYGRALEAGL 1457

Query: 1131 QGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHR 1190
            Q ++R   +D                       +E  L G+ +    +    +       
Sbjct: 1458 QHHMRALPYD-----------------------MERVLRGRHWNTGEEAARAQE------ 1488

Query: 1191 WMGSKTIADCAEALIGAYYVGG 1212
             +  K +ADC EAL+G +   G
Sbjct: 1489 -VRGKRLADCVEALVGCHLAPG 1509


>gi|169665428|gb|ACA63429.1| dicer-like 1 protein [Chlamydomonas reinhardtii]
          Length = 2243

 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 102/208 (49%), Gaps = 20/208 (9%)

Query: 47  RIYQLKVFEVAKRR-NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ ++  +A+R  +T+   ETG GKT IAV  I +    + + G  +L  FLAPTV L
Sbjct: 9   REYQAELLRMARRHASTVIYAETGTGKTRIAVERILEAHGELVAAG--RLAAFLAPTVPL 66

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V QQ +V+ V     V  Y G    D  +   WQ+   + DVL  TP  L   +  AF++
Sbjct: 67  VRQQAEVL-VAAGLRVVVYTGEDNRDARNRAGWQRLHQEADVLCATPDALNRLIAHAFIT 125

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYH---KSDNKPKVFGMTASPVVRKGVSSAMDC 222
           +  +  IV DECHH   NHPY  +++ F       D +P + G+TASP            
Sbjct: 126 IPQLGMIVFDECHHTNANHPYAVLLRVFVRHLTPPDQRPVLLGLTASP------------ 173

Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFV 250
             +  EL   L +Q+    +  +++ F+
Sbjct: 174 -HKADELMRLLGAQMVAASNTAQLQTFM 200



 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 142/318 (44%), Gaps = 44/318 (13%)

Query: 417  CIIFVERIIAAKVVERFVKKVPFLTHLTV--AYLTGST-----TSVDALTPKVQKEVLES 469
             ++F +R +A   + R + ++P      +  A   G+T      S  A+  + Q+ V  +
Sbjct: 701  AMVFCQRKVACVALHRLLTELPAARGGAIRPAVFMGNTGAGHSASSLAMDGRKQERVRRA 760

Query: 470  FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG 529
            F  G +N+L +T V  EG+    C+ VI  D P  V+ ++Q  GRAR   S ++L     
Sbjct: 761  FSSGALNVLISTSVGAEGLDFRTCNAVIMVDPPDHVTPFVQCAGRARAPGSCYLLFAR-- 818

Query: 530  NLKQRNKLFDIIRSERSVT------DTALSRD---------PEACFLKACTYVKTKS--- 571
            + +Q+  +    R E  +        TA +R+         P   F      V T+    
Sbjct: 819  DDRQQQAIAKRSREEADMVAKALKLSTAAAREAQQRQQTDPPVNPFFSQDVDVVTEELQQ 878

Query: 572  --YIVESTGASVTTDSSVNLIHRYCEMLPSDKY-YTPKPIFKYKSAE------EAYECEL 622
              + V  TGA +    + NL+  YC  LP +      +P + Y+  E      +A+   +
Sbjct: 879  NLFRVPHTGAVMCGPLAQNLLESYCRTLPGNSGDVLLQPYYSYQEYESPLTRRKAFVATV 938

Query: 623  TLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP------SVEEPSEN 676
             +P+N+P   + GP   NK  ++Q  C+    +L+++GAL++HLLP       + E  + 
Sbjct: 939  HMPANSPLGVVEGPMQSNKGDARQHACMATVRRLYELGALDEHLLPRFTRRGRMREAQQQ 998

Query: 677  NLISKKNESLPGAGTTKR 694
            +L+  K  +LP    + R
Sbjct: 999  DLLEHK--ALPRVALSHR 1014



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 33/142 (23%)

Query: 1074 SFSMERLELLGDSVLKYAVSCHLFLT---YPKKHEGQLSARRSWAVCNSTLHKLGTDRKL 1130
            +F  ERLE LGD+VLKY  + +++ T    P  HEG +S +R   V N  L+    +  L
Sbjct: 1590 AFDCERLETLGDAVLKYLATLYVYGTERDVPVSHEGVMSYKRDQLVANEALYGRALEAGL 1649

Query: 1131 QGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHR 1190
            Q ++R   +D                       +E  L G+ +    +    +       
Sbjct: 1650 QHHMRALPYD-----------------------MERVLRGRHWNTGEEAARAQEVR---- 1682

Query: 1191 WMGSKTIADCAEALIGAYYVGG 1212
                K +ADC EAL+G +   G
Sbjct: 1683 ---GKRLADCVEALVGCHLAPG 1701


>gi|189182361|gb|ACD81882.1| dicer-like nuclease 1 [Chlamydomonas reinhardtii]
          Length = 2236

 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 102/208 (49%), Gaps = 20/208 (9%)

Query: 47  RIYQLKVFEVAKRR-NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ ++  +A+R  +T+   ETG GKT IAV  I +    + + G  +L  FLAPTV L
Sbjct: 9   REYQAELLRMARRHASTVIYAETGTGKTRIAVERILEAHGELVAAG--RLAAFLAPTVPL 66

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V QQ +V+ V     V  Y G    D  +   WQ+   + DVL  TP  L   +  AF++
Sbjct: 67  VRQQAEVL-VAAGLRVVVYTGEDNRDARNRAGWQRLHQEADVLCATPDALNRLIAHAFIT 125

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYH---KSDNKPKVFGMTASPVVRKGVSSAMDC 222
           +  +  IV DECHH   NHPY  +++ F       D +P + G+TASP            
Sbjct: 126 IPQLGMIVFDECHHTNANHPYAVLLRVFVRHLTPPDQRPVLLGLTASP------------ 173

Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFV 250
             +  EL   L +Q+    +  +++ F+
Sbjct: 174 -HKADELMRLLGAQMVAASNTAQLQTFM 200



 Score = 97.1 bits (240), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 142/318 (44%), Gaps = 44/318 (13%)

Query: 417  CIIFVERIIAAKVVERFVKKVPFLTHLTV--AYLTGST-----TSVDALTPKVQKEVLES 469
             ++F +R +A   + R + ++P      +  A   G+T      S  A+  + Q+ V  +
Sbjct: 701  AMVFCQRKVACVALHRLLTELPAARGGAIRPAVFMGNTGAGHSASSLAMDGRKQERVRRA 760

Query: 470  FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG 529
            F  G +N+L +T V  EG+    C+ VI  D P  V+ ++Q  GRAR   S ++L     
Sbjct: 761  FSSGALNVLISTSVGAEGLDFRTCNAVIMVDPPDHVTPFVQCAGRARAPGSCYLLFAR-- 818

Query: 530  NLKQRNKLFDIIRSERSVT------DTALSRD---------PEACFLKACTYVKTKS--- 571
            + +Q+  +    R E  +        TA +R+         P   F      V T+    
Sbjct: 819  DDRQQQAIAKRSREEADMVAKALKLSTAAAREAQQRQQTDPPVNPFFSQDVDVVTEELQQ 878

Query: 572  --YIVESTGASVTTDSSVNLIHRYCEMLPSDKY-YTPKPIFKYKSAE------EAYECEL 622
              + V  TGA +    + NL+  YC  LP +      +P + Y+  E      +A+   +
Sbjct: 879  NLFRVPHTGAVMCGPLAQNLLESYCRTLPGNSGDVLLQPYYSYQEYESPLTRRKAFVATV 938

Query: 623  TLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP------SVEEPSEN 676
             +P+N+P   + GP   NK  ++Q  C+    +L+++GAL++HLLP       + E  + 
Sbjct: 939  HMPANSPLGVVEGPMQSNKGDARQHACMATVRRLYELGALDEHLLPRFTRRGRMREAQQQ 998

Query: 677  NLISKKNESLPGAGTTKR 694
            +L+  K  +LP    + R
Sbjct: 999  DLLEHK--ALPRVALSHR 1014



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 33/142 (23%)

Query: 1074 SFSMERLELLGDSVLKYAVSCHLFLT---YPKKHEGQLSARRSWAVCNSTLHKLGTDRKL 1130
            +F  ERLE LGD+VLKY  + +++ T    P  HEG +S +R   V N  L+    +  L
Sbjct: 1590 AFDCERLETLGDAVLKYLATLYVYGTERDVPVSHEGVMSYKRDQLVANEALYGRALEAGL 1649

Query: 1131 QGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHR 1190
            Q ++R   +D                       +E  L G+ +    +    +       
Sbjct: 1650 QHHMRALPYD-----------------------MERVLRGRHWNTGEEAARAQEVR---- 1682

Query: 1191 WMGSKTIADCAEALIGAYYVGG 1212
                K +ADC EAL+G +   G
Sbjct: 1683 ---GKRLADCVEALVGCHLAPG 1701


>gi|403418950|emb|CCM05650.1| predicted protein [Fibroporia radiculosa]
          Length = 1373

 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 125/534 (23%), Positives = 200/534 (37%), Gaps = 96/534 (17%)

Query: 1006 HMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEA 1065
            ++ PEL  +  +P S  +++ L+PS++ R++  +L     +E+N H     I    ++ A
Sbjct: 822  YLIPELCAKFTIPASTFRTMLLVPSILHRIDHQLLV----KELNAHFFQHTILEEHLIAA 877

Query: 1066 LTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG 1125
            LT      +F  ERLEL GD+ LKY  S + F+T P   EG L   R   + N  L    
Sbjct: 878  LTPPSASVAFDYERLELFGDAFLKYVASIYCFVTTPHVREGALHMARQKIISNKALLTGA 937

Query: 1126 TDRKLQGYIRDSAFDPRRW--VAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGK 1183
                L  YI+   F  + W  +     S  P+  +  V   +         Q T     K
Sbjct: 938  NRIGLPPYIQSKPFVAKTWTPITSPHSSRDPINDQKAVHYNDAVAGDTSAIQTTSKRSKK 997

Query: 1184 PCDMGH---RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD--LEVSLVDDC 1238
                     +W+G KT+AD  EA+IGA Y+ GG   AL  MK L ++     + S     
Sbjct: 998  QKQQDEQNIQWLGDKTVADVVEAIIGAAYLSGGQRIALQTMKVLSVNIPGVEQWSDFSRL 1057

Query: 1239 ITRASLRSYVP-RINEIKDIESKIGYEFTVKFLLQEAITHASV----------------- 1280
             T  +  S VP     ++ +E+ +G  F    LL +A+TH S+                 
Sbjct: 1058 FTSQTSPSTVPLPTATVRAVETIVGNVFARPQLLAQALTHTSIGAHDDRTYDRLEFVGDA 1117

Query: 1281 -----------------------------------QEFYCYQNLYKHLQHCSTLLLSQIT 1305
                                                 F  +  L+ HL+H +  + + + 
Sbjct: 1118 VLDFLVVQFIYDRNPGLSPNGLTLLKSAMVSNHALAAFCVHSGLHIHLRHAAPEVGTAVQ 1177

Query: 1306 EYVKSFPKPGETTDS---------------GPSMKAPKALGDLLESIVGAVLIDTKLNLD 1350
             YV+   K GE  +                  ++  PK L D++ES++GA+ I       
Sbjct: 1178 VYVR---KLGEVREKEYRLAQSERRLPGQYWLALDPPKTLSDVVESVIGALYISDDFQET 1234

Query: 1351 EVWRIFKPILSPI----VTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQ 1406
             V   F   + P     +    L   P   L EL  S G   +     + E       + 
Sbjct: 1235 SVRAFFDGTIKPFYEYHIRLQSLCPHPTTTLFELLQSFG-CCQHGIAKEREDYRTRCEVV 1293

Query: 1407 LKDVLLVGEGQERSRKAAKGKAASQLLKKLE--------VCEKRISKGASNTGK 1452
            + DV+L     E +  AA    A+  L  L+         C+ R+S+ +    K
Sbjct: 1294 VHDVVL-ASALEATSAAATRTVATLALDALDGDPHFMIRTCDCRVSQQSKKARK 1346



 Score = 67.0 bits (162), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 118/304 (38%), Gaps = 56/304 (18%)

Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA 457
           KL EL++   S   S +VL  + V+R I A ++   ++++        A+        +A
Sbjct: 242 KLVELIETNTSPTNSFRVL--VLVKRKIVASMIVELLREL-------AAFNRVRNVRPEA 292

Query: 458 LTPKV---QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
           +T      Q+   + F  G  N+L  T    E M  P C  VIRFDL ++  SY  S   
Sbjct: 293 MTQAQYMDQELTFDKFVRGDTNILLITKS-SEHMTFPKCDIVIRFDLFESQLSYAASVAH 351

Query: 515 ARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS--- 571
               +   + M+ERGN   R  L DI         TALS D    F +    +K  S   
Sbjct: 352 CSNSDGYLVHMVERGNAGHRRVLADI---------TALSDD----FQRWLPRLKPGSTGA 398

Query: 572 ------------YIVES-------------TGASVTTDSSVNLIHRYCEMLPSDKY-YTP 605
                       Y  +S             TG  V    ++ +IHR    L  D   +T 
Sbjct: 399 IPPRSLHETLDPYWSDSDDDEPSPLIRDPTTGGIVKCSDAITVIHRLAASLQDDHNGFTI 458

Query: 606 KPIFKYKSAEEAYEC-ELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALND 664
           +P F+     E      ++LP  +  + I GP  +    S Q  C  AC KL   G L+ 
Sbjct: 459 EPFFQCAETREGMRTFTISLPQPSSIRPITGPPRKFPPDSLQAACYLACSKLLDEGMLDY 518

Query: 665 HLLP 668
            + P
Sbjct: 519 RMFP 522


>gi|327401630|ref|YP_004342469.1| helicase domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327317138|gb|AEA47754.1| helicase domain protein [Archaeoglobus veneficus SNP6]
          Length = 746

 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 136/514 (26%), Positives = 223/514 (43%), Gaps = 54/514 (10%)

Query: 32  VDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNG 91
           V  P    N+I    R YQ+ +   A  RNT+ +L TG GKT +A+++I   A  + + G
Sbjct: 4   VSHPLIKENAIE--RRAYQIAIAATALMRNTLVILPTGLGKTAVALLVI---ASRLHNEG 58

Query: 92  FKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVD--EWDSQCWQKEINKNDVLV 149
            K L+  LAPT  LV Q     R +     EE     G    E  ++ W+K      ++V
Sbjct: 59  GKALV--LAPTKPLVEQHASFFRKNLRLNSEEVIALSGETPPEKRAELWEK----ARLIV 112

Query: 150 MTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209
            TPQ++ + +    +SL  V  I  DE H A G + Y  I ++++ ++  KP V  MTAS
Sbjct: 113 STPQVVENDVLAGRISLKDVVHITFDEAHRAVGEYSYVYIAEKYFEEA-KKPLVLAMTAS 171

Query: 210 PVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269
           P          D E +I E+   L   +  IE +TE +  V    +   F  + ++   D
Sbjct: 172 P--------GSDVE-RIREVIKNLG--IEEIEIRTEHDEDV----KPYVFSRKIEWIKVD 216

Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
           +  +L+    KF+ +L KL+  +L       +     +K+L      +     E G    
Sbjct: 217 MPEELKAVRQKFEEAL-KLRFKKLERLGVTAEGLS--KKELLALQESLQAEAAETGDSRL 273

Query: 330 YEAVKICLEKVLKAQEECEIYRQSSLQC-----KYFLEEVLHVIGSALP---LADKIFLD 381
           +EAV +  E VLK Q   E+     L       K  + E     GS      + D +F+ 
Sbjct: 274 FEAVSVLAE-VLKIQHGMELIETQGLDALKEYLKRLIREARSKGGSRAAKSIIGDPLFMG 332

Query: 382 FGFDYSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPF 439
                +KA        KL +L ++      +      I+F   R  A  +VE   K+   
Sbjct: 333 ---AVTKAAGCRAEHPKLEKLKEVVKKQLEEKPDSRIIVFTNFRDTAEVIVEELKKE--- 386

Query: 440 LTHLTVAYLTGSTTSVD--ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
              + V+   G     +   ++ K Q E LE FR G++ +L AT V EEG+ +P+   V+
Sbjct: 387 --GIPVSRFVGQAKRFEKKGMSQKEQVETLERFRSGEIKVLVATSVGEEGLDIPSTDLVV 444

Query: 498 RFDLPKTVSSYIQSRGR-ARQHNSQFILMLERGN 530
            ++   +    IQ +GR  R    + ++++ +G 
Sbjct: 445 FYEAVPSEIRAIQRKGRTGRAREGRIVVLITKGT 478


>gi|347968645|ref|XP_003436256.1| AGAP002836-PB [Anopheles gambiae str. PEST]
 gi|333467908|gb|EGK96757.1| AGAP002836-PB [Anopheles gambiae str. PEST]
          Length = 2336

 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 150/699 (21%), Positives = 271/699 (38%), Gaps = 157/699 (22%)

Query: 461  KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
            + Q+EVL+ FR  + NLL  T V+EEG+ +P C+ VIR++ P    SY Q +GRA+   +
Sbjct: 598  RKQEEVLKRFRMHECNLLIGTSVLEEGIELPKCNLVIRWNSPANYRSYAQCKGRAKAPGA 657

Query: 521  QFILMLERGNLKQRNKLFDIIRS--------------------------ERSVTDT---- 550
              +L +   N   RN+  + + S                          +R + +T    
Sbjct: 658  YHVLFVTPENAASRNEQQEDMASIEDVSLDGMIPEGPKDDNTRETIDDQDRRMIETATDA 717

Query: 551  -----ALSRDPEACFLKACTYVKTKSYIVE--------------STGASVTTDS------ 585
                 A+ R+ E   L  C   +   + ++              S+G +V   S      
Sbjct: 718  MIEQVAIYREVEKLLLAKCRNGEPPDWELKHADCFNHCLEVYRPSSGGAVALQSNGTCAS 777

Query: 586  -----SVNLIHRYCEMLPSDKYYTPKPIFK----YKSAEEAYECELTLPSNAPF-QTIVG 635
                 ++  +++YC  LPSD +    PI++     +   + Y+  + LP N+P+ + I+G
Sbjct: 778  LWLGNAIQTLNKYCAKLPSDTFTKLTPIWRCATTVRKGRKLYQYTIRLPINSPWKEDILG 837

Query: 636  PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP-------SVEEPSENNLISKKNESL-- 686
                 + L+++L     C  LH  G L++   P       + E   EN  + + +  +  
Sbjct: 838  LPMPTETLARRLAAYMTCRMLHAAGELDNSFQPFGKEAFRAFEADWENFELEESDAKILS 897

Query: 687  ----PGAGTTKRKELHGTTPIRALSG-RWGEKCGVILHAYKFNFACSIVTE-------IY 734
                P  GTTKR++ +        +  R   +    L+  +    C I  E       IY
Sbjct: 898  ENSDPRPGTTKRRQYYYKRIASVFNECRPDAETVAYLYHIRMELICPIPEEQNTRGRKIY 957

Query: 735  S------GFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQ-VHLDADQMSKAKCFQ 787
            +      GF +L  ++L   + +F   ++  S  VK ++    Q V L A Q+    CF 
Sbjct: 958  APEESAQGFGILT-TKLIPKISSF--PIFTRSGEVKVSLDLCPQRVKLSAHQLEMVNCFV 1014

Query: 788  ELFFNGLF---GKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRI 844
            +  F  +      L +   ++    FF+        + +      PL+  +        +
Sbjct: 1015 KYTFTKVLRLQKSLMLYDANATENCFFIVPTVKQAVAGAAGKDEPPLQSDDVM------V 1068

Query: 845  NWSGINPCASVVE-----FIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLAN 899
            +W  +   A+ V      FI +++  G                                 
Sbjct: 1069 DWEFVEKIATNVHRSGPTFIPDEARKGY-------------------------------- 1096

Query: 900  GSVDAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKY 955
             + D    +D VV+  +  R     + + EI N+ S +S F G+   +  TF  Y+  KY
Sbjct: 1097 -TFDVGKFRDAVVMPWYRNRDQPQYFYVAEICNHLSPKSTFPGS---NYATFEEYYHRKY 1152

Query: 956  GIVLIHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPP 1009
             I + +  QPLL +  +    N L     N  G     S + +K        Q  + + P
Sbjct: 1153 KIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVP 1211

Query: 1010 ELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
            EL      P S+ ++   LP V+ R+ +L+LA ++R ++
Sbjct: 1212 ELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQV 1250



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            ++IL+ALT     +  ++ERLE +GDS LKYA++ +L+  Y   HEG+LS  RS  V N 
Sbjct: 1745 AIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQVSNL 1804

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L   +  + F+P   W+ P
Sbjct: 1805 NLYRLGRRKRLGDCMIAAKFEPHDNWLPP 1833



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 7/128 (5%)

Query: 1314 PGETTDSGPS--MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLEL 1371
            PGE    G +  ++ PKALGD+ ESI GA+ +D+ ++LD VW++++ ++ P +      +
Sbjct: 2201 PGEGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSLDTVWKVYRKMMGPEIEKFSSSV 2260

Query: 1372 P--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAA 1429
            P  P+REL+E+      F K      G  V   + +  K       G  R+ + AK  AA
Sbjct: 2261 PKSPIRELLEMEPETAKFGKPEKLTDGRRVRVTVEVFGKGTF---RGIGRNYRIAKCTAA 2317

Query: 1430 SQLLKKLE 1437
               L++L+
Sbjct: 2318 KCALRQLK 2325



 Score = 43.9 bits (102), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1226
            K++ADC EALIGAY +  G   AL  M WLGI
Sbjct: 1948 KSVADCVEALIGAYLIECGPRGALLFMAWLGI 1979


>gi|432867922|ref|XP_004071339.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like [Oryzias
           latipes]
          Length = 681

 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 136/586 (23%), Positives = 249/586 (42%), Gaps = 73/586 (12%)

Query: 49  YQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
           YQ +V E A K  N I  L TG GKT  AV + K   + +++    K+++ L   VHLV 
Sbjct: 9   YQEEVVERALKGENIIIWLPTGGGKTRAAVYVAK---RHLETTANAKVVV-LVNMVHLVD 64

Query: 108 QQY------------DVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL 155
           Q Y            ++I+V    E ++++G             K + +NDV++ T QIL
Sbjct: 65  QHYSKEFKPHLGSLYNLIKVSGVSEEKDFFG-------------KVVQRNDVIICTAQIL 111

Query: 156 LDAL----RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK----SDNKPKVFGMT 207
            +AL        + L  +  ++IDECHH      Y K+M+ +  K        P++ G+T
Sbjct: 112 YNALIDKEEAKHVELSDITLLIIDECHHTHKEAVYNKVMRCYMEKKLKGERQLPQILGLT 171

Query: 208 ASPVVRKGVSSAMDCEGQISELESTLDSQVFTIED-KTEMEVFVPSAKESCRFYDQSKFC 266
           ASP    G     D    + E+ + LDS + + ++ + E+   VP      + +D  +  
Sbjct: 172 ASPGT-GGARILEDAVEHVLEICANLDSAIVSTKNYEPELMKKVP---RPVKTFDIVEKR 227

Query: 267 GSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGL 326
            +D  G   + W             Q++ + ++    +  +    +Y A ++  L++ G+
Sbjct: 228 HADPLGD-HLKWMML----------QIHDFMNLPRDARLRQCGTQEYEADVV-ILEQRGV 275

Query: 327 ICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
                 V  C   + +  +   I     +   Y   E  +   +   +    F   G   
Sbjct: 276 RENNRLVAQCALHLRQYNDALLINDTLRMMDAYRSLEEFYDSKTTTAMDGTDFFLLGLFE 335

Query: 387 SKAVDLGYISTKLH-------ELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438
              V+L  ++   H       +L  + L  FG S +   I+F +   + + +  +V K  
Sbjct: 336 ENQVELRKLAADSHFENPNMAKLESVLLQQFGPSVKSRGILFSKTRQSTRCLFDWVLKSR 395

Query: 439 FLTHLTV--AYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496
            L    V  A LTG+   +  +T   Q E +  FR G +NLL +T V EEG+ +P C+ V
Sbjct: 396 ALQTAGVKAAILTGAGNGITYMTQNEQAETIRRFRQGDLNLLISTSVAEEGLDIPECNLV 455

Query: 497 IRFDLPKTVSSYIQSRGRARQHNSQF-ILMLERGNLKQRNKLFDIIRSERSVTDTALSRD 555
           +R+ L     +  Q+ GRAR  +SQ+ ++    G   +R ++ + +    +    A+ R 
Sbjct: 456 VRYGLLTNEIAQQQASGRARAVDSQYSVVARADGKEVRRERINEDLEVLTAKAIAAVQRM 515

Query: 556 PEACFLKACTYVKTKSYIVESTGASVTTD-------SSVNLIHRYC 594
            +  F +  + ++ ++ I+     +   +       SS+ L+ R C
Sbjct: 516 TQQDFRRKISSLQNEAVIINKILETKKMEKRARFQASSIRLLCRNC 561


>gi|354493094|ref|XP_003508679.1| PREDICTED: interferon-induced helicase C domain-containing protein
           1 isoform 1 [Cricetulus griseus]
 gi|344245797|gb|EGW01901.1| Interferon-induced helicase C domain-containing protein 1
           [Cricetulus griseus]
          Length = 1022

 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 141/550 (25%), Positives = 237/550 (43%), Gaps = 87/550 (15%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ++V + A + +N I  L TG+GKT +AV + KD     K       ++ L   V L
Sbjct: 307 RPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASEPGKVMVLVNKVML 366

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CWQKEINKNDVLVMTPQILLDAL--- 159
             Q   + R   +  ++++Y   G+   D+Q    + + +   DV++ T QIL ++L   
Sbjct: 367 AEQ---LFRKEFNPFLKKWYRIIGLS-GDTQLKISFPEVVKSYDVIISTAQILENSLLNL 422

Query: 160 ---RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-------------PKV 203
                  + L     I+IDECHH      Y  IM+ +  +                 P++
Sbjct: 423 ESGEDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLKNNKLKKQNKPVVHLPQI 482

Query: 204 FGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIED-KTEMEVFVPSAKESCRFYDQ 262
            G+TASP V  G     + E  I  + + LD+  FTI+  K  +       KE C+    
Sbjct: 483 LGLTASPGV-GGAKKQAEAEKHILNICANLDA--FTIKTVKENLGQLKHQIKEPCK---- 535

Query: 263 SKFCGSDLKGKLEVSWSKFDASLSKLQGS-QLNCY------------------------K 297
            KF  +D     +   + F   L ++  S Q  C                         K
Sbjct: 536 -KFVIAD-----DTRENPFKEKLLEIMTSIQTYCQMSPMSDFGTQPYEQWAILMEKKAAK 589

Query: 298 DMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL----EKVLKAQEECEIYRQS 353
             + K++   + L  Y+ + L   D + +I AY  ++       EK L   E+ +   +S
Sbjct: 590 SGNRKNRVCAEHLRKYN-EALQINDTIRMIDAYSHLETFYSDEKEKKLAVLEDSD---ES 645

Query: 354 SLQCKYFLEEVLHVIGSALPL--ADKIFLDFGFDYSK-----AVDLGYISTKLHELLQLF 406
                   EE+   +  +L L   D+  ++  FD  K     A +  Y + KL +L +  
Sbjct: 646 EDDASGHAEELKDNVKESLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRKTI 705

Query: 407 L-SFGKSTQV-LCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YLTGS--TTSVDALTP 460
           L  F K+ +    IIF +   +   + +++ +      + V   +L G+  ++ V  +T 
Sbjct: 706 LEQFTKTEESSRGIIFTKTRQSTYALSQWITENEKFAEVGVKAHHLIGAGHSSEVKPMTQ 765

Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
             QKEV+  FR GK+NLL AT V EEG+ +  C+ VIR+ L     + +Q+RGRAR   S
Sbjct: 766 NEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADES 825

Query: 521 QFILMLERGN 530
            ++L+   G+
Sbjct: 826 TYVLVTSSGS 835


>gi|307109321|gb|EFN57559.1| hypothetical protein CHLNCDRAFT_143199 [Chlorella variabilis]
          Length = 2232

 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 127/298 (42%), Gaps = 74/298 (24%)

Query: 418  IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
            I+FV + +AA  + + +  +P    +        T+++  L P+ Q  +L  FR G++NL
Sbjct: 817  IVFVTQRMAAWALHKMLSTLPATRGVF------RTSAIMGLGPREQSRILRRFRAGELNL 870

Query: 478  LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
            L +T V EEG+ V +C  V+R+DLP    SYIQSRGRAR  NS+ ++M++ G  ++   +
Sbjct: 871  LVSTSVAEEGIDVKSCQLVVRYDLPNNAQSYIQSRGRARMINSELLMMVQEGVEEEHRMV 930

Query: 538  FDIIRSERSVTDTAL--------------SRDPEACFLKACTYVKTKSYIVESTGASVTT 583
              ++  E  +    L              +                  Y VESTGA  T 
Sbjct: 931  RHMVEYEHQLRQEVLLNIERLQAGAIDDDADVAAEAAELQAALAHAPVYEVESTGARATL 990

Query: 584  DSS------------------------------VNLIHRYCEMLPSDKYYTPKPIFKYKS 613
            +++                              + L+H Y   LPSD+Y   +P+F+ + 
Sbjct: 991  ENAQARPHTCAQAASRPAQRRCSCCRTAVQEGPLALLHTYTSKLPSDQYTVLRPLFRTEQ 1050

Query: 614  AEE-AYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSV 670
             ++  +   + LP+N+P     G                       +GALND LLP+V
Sbjct: 1051 LDQRVFRTRVFLPNNSPLPWADG-----------------------LGALNDFLLPAV 1085



 Score = 93.6 bits (231), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 152/380 (40%), Gaps = 100/380 (26%)

Query: 946  TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHV 1005
            ++  Y++E++G   +  GQPLL   +      L    +      +G    +  ++    V
Sbjct: 1647 SYAAYYAERWGQRELDEGQPLLAAARVSR-QQLARGLDMRRARKRGCALQLEAEE---EV 1702

Query: 1006 HMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEA 1065
             + P+L +   VP ++ + L  LP++M +LE  +LA QL E++        +P+ L  E 
Sbjct: 1703 RLLPQLCIVHPVPAALWRPLGTLPALMWQLEGALLADQLLEQM--------LPADLPPEK 1754

Query: 1066 LTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH--- 1122
               L   E     RLE LGD+ LK+AVS  LF  + + HEGQL+ R+   V N  L    
Sbjct: 1755 APPL---ELLRTTRLETLGDAFLKFAVSAQLFSAHRQYHEGQLTKRKELVVANIHLAEAA 1811

Query: 1123 -KLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVV 1181
             KLG DR+L    R   F    W +P  +                               
Sbjct: 1812 VKLGLDRRL----RVLPFSMHNWASPEAVR------------------------------ 1837

Query: 1182 GKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMK------------------- 1222
                        SK +AD  EAL+GA+ V GG  AAL  ++                   
Sbjct: 1838 ----------KSSKVLADAMEALLGAFLVAGGYPAALAFLQASAGRRGRRLRLPRAAAPG 1887

Query: 1223 W----------LGIDADLEVSLVDDCITRASLRSYVPRIN-EIKDIESKIGYEFTVKFLL 1271
            W          LG+         + CI   S     P +  ++  IE+ +G+ F  K+L+
Sbjct: 1888 WGLCSQPYSQHLGLLKGWVPISAEACIPPES-----PELECDVGAIEAVLGHTFASKWLV 1942

Query: 1272 QEAITHASV--QEFYCYQNL 1289
             EA+TH S       C+Q L
Sbjct: 1943 VEALTHCSWPGSGVRCFQRL 1962



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 169 VCFIVIDECHHATGNHPYTKIMKEFYHKSDN----KPKVFGMTASPVVRKGVSSAMDCEG 224
           V  +V DECHH    HP+ +IM++FYH  +     +P VFGMTA+P       +  D E 
Sbjct: 307 VHLLVFDECHHCKSKHPFNRIMQQFYHSHEALLAPRPHVFGMTAAPANVGRRETQEDMEA 366

Query: 225 QISELESTLDSQVFTIEDKTEME 247
           +I  LE+ LD++V T+ ++  +E
Sbjct: 367 KIRVLEANLDARVVTVVNRASVE 389



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 94  KLIIFLAPTVHLVHQQYDVIRVHTDF-EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTP 152
           ++ IFLAP V LV QQ +V+R H    +V  + G  GVD ++ + W      +DVL MTP
Sbjct: 167 RVAIFLAPKVALVVQQAEVLRAHLGADQVAHFVGEMGVDLFEKERWHAAFADHDVLAMTP 226

Query: 153 QILLDAL 159
           QILL+ L
Sbjct: 227 QILLNLL 233



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 36/56 (64%)

Query: 1330 LGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLG 1385
            L D++ES++GAV +DT  ++  VW + + +L P+V P+ L + P+R L EL    G
Sbjct: 2083 LSDVVESLIGAVFVDTGGDMGRVWEVTQRLLDPMVVPETLPVHPIRRLQELVQRCG 2138



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 31/35 (88%)

Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK 81
          RIYQL++ E+AK+RN IA L+TGAGKT ++V+LI+
Sbjct: 45 RIYQLELLELAKKRNVIAFLDTGAGKTFVSVLLIR 79


>gi|225563402|gb|EEH11681.1| dicer-like protein [Ajellomyces capsulatus G186AR]
          Length = 1436

 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 136/274 (49%), Gaps = 18/274 (6%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVA--------YLTGSTTSVDALTPKVQKEVLES 469
           IIF ++     ++   + + P L H+ V+        Y   ++T ++    K QK  ++ 
Sbjct: 369 IIFAQQRSTVTMLAHLISRHPRLKHMFVSGAFLGDSGYAGRTSTIIELHDLKTQKGSIDD 428

Query: 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG 529
            R GK NLL AT V+EEG+ V  C  VI FD    + S+IQ RGRAR+  S+F++ L   
Sbjct: 429 LRSGKKNLLIATSVLEEGIDVSACHLVICFDTINNLRSFIQRRGRARKERSKFVMFLNGD 488

Query: 530 NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNL 589
           +  Q NK   +    +S+ +  + R  +    +       + + +ESTGA +T +++   
Sbjct: 489 DNSQGNKWTKMEDVMKSMYEEDMRRLEDVWAKENVEEESDEDHRIESTGALLTFENARPH 548

Query: 590 IHRYCEMLPSDKYYTPKPIFKYKSAE--EAYECELTLPS--NAPFQTIVGPT-SRNKNLS 644
           +  +C  L  + +   +P+F ++  E       ++ LP+  +  F+ I G    R   L+
Sbjct: 549 LEHFCATLQCE-FTDTRPVFMFRENELDGMVTAKVLLPNVLDPKFRVIKGSKWWRTDQLA 607

Query: 645 KQLVCLEACEKLHQVGALNDHLLP----SVEEPS 674
           ++    +A  KL+Q G +NDHLLP    ++E P+
Sbjct: 608 QRDAAFQAYLKLYQEGLVNDHLLPVHCMTMEHPA 641



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 5/133 (3%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQL++ E + R N I  ++TG+GKT +A++ I+     +++    K + FL PTV L
Sbjct: 47  PRAYQLEMLEASLRENIIIAMDTGSGKTQVAILRIR---HELETCAAHKFVWFLTPTVAL 103

Query: 106 VHQQYDVIRVH-TDFEVEEYYGAKGVDEWDS-QCWQKEINKNDVLVMTPQILLDALRKAF 163
             QQ+  I    + +E     G+  V+ W + + W   +    ++V TPQ+LLDA+   F
Sbjct: 104 AEQQHKSISEQLSAYETRLLLGSDNVNYWSTKKIWDDILLNIRIVVSTPQVLLDAMTHGF 163

Query: 164 LSLDIVCFIVIDE 176
           +++  +  +V DE
Sbjct: 164 VTMPQIALLVFDE 176



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 114/276 (41%), Gaps = 53/276 (19%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+       L PS++  +E  +LA +L + I      F    SL++ A++     E+ +
Sbjct: 887  LPLEYSMFALLAPSIIHNVEIYLLAEELNKTI-LRPVAF-TDLSLVITAISASVAREATN 944

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +R+E LGDS+LK+  +  L    P  HEG LS  +   V N  L     +  L  +I  
Sbjct: 945  YQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRAKDTVVSNKRLSYAAIETGLDKFILL 1004

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
              F   +W  P           C  D LE                 +  D+  R M +KT
Sbjct: 1005 DVFTGAKWRPP-----------CNKDHLE----------------SEEQDVPQREMSTKT 1037

Query: 1197 IADCAEALIGAYYVGGGLIAA-------LYMMKWLGIDADLEVSLVDDCITRASLRSYVP 1249
            +AD  EAL+ A  + GG   A       L  ++W+ ++  +            +L S VP
Sbjct: 1038 LADVVEALLAAATLDGGQRKAEKCLEIFLPELQWMPLEDRVN-----------ALYSSVP 1086

Query: 1250 RINE------IKDIESKIGYEFTVKFLLQEAITHAS 1279
               E       +++ES +GY F  K  L +A TH S
Sbjct: 1087 EAYENTLTSWFQEVESLVGYVFNKKVFLVQAFTHPS 1122


>gi|301612421|ref|XP_002935717.1| PREDICTED: probable ATP-dependent RNA helicase DDX58-like [Xenopus
           (Silurana) tropicalis]
          Length = 1032

 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 129/513 (25%), Positives = 235/513 (45%), Gaps = 50/513 (9%)

Query: 60  RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119
           +NT+    TG+GKT++++++ K   + +  NG K  ++F+A  V +  QQ DV   +  F
Sbjct: 277 KNTMICAPTGSGKTLVSLVICKHHLECM-PNGKKGKVLFMATKVPVYEQQKDVFCKY--F 333

Query: 120 EVEEYYGAKGVDEWDSQCWQKE--INKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDE 176
           E   Y   +GV    ++ +     I  +D++++TPQIL++ L+   + S+ +   ++ DE
Sbjct: 334 EGSRY-KVEGVSGETAENFPVGLVIENSDIIILTPQILVNCLQSGTVPSISVFSMMIFDE 392

Query: 177 CHHATGNHPYTKIMKEFYHKSDNKP-----KVFGMTASPVVRKGVSSAMDCEGQISELES 231
           CH+  GNHPY  +M  +     N P     ++ G+TAS    K   S  +    I+ L +
Sbjct: 393 CHNTIGNHPYNVLMFSYLDLKLNMPGVALPQIIGLTASVGTGKA-KSLPEAIHYITRLCA 451

Query: 232 TLDSQVFTI--EDKTEME--VFVPSAKESC---RFYDQSKFCGSDLKGKLEVSWSKFDAS 284
           +L+ +V +   E K E+   VF P+   S    R  D      S++  + E     F   
Sbjct: 452 SLNIEVISTVKEHKEELAETVFKPTKSISIAPQRENDSFTAIMSEIMSETEKMAKDFYPE 511

Query: 285 LSKLQGSQLNCYKD-------MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL 337
           L  +   Q   Y         +D + K    Q+ D + ++  C           ++    
Sbjct: 512 LYSMSNIQNRSYGTQKYEQWIVDTQKKCCVLQMDDKNKEMRIC----------SSLFTYT 561

Query: 338 EKVLKAQEECEIYRQSSLQCKY-FLEEVLHVI--GSALPLADKIFLDFGFDYSKAVDL-- 392
           E + K  +   I   +  +    FLE   + +  GS   +  K++  F     + +D+  
Sbjct: 562 EHLRKYNDSIMINDDARTKDALDFLENFFNNMKNGSFNEIEQKLYNMFQDKLPQLLDISK 621

Query: 393 GYISTKLHELLQLFL--SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG 450
             I+ KL EL Q  L  S+ ++ +   ++FV+       ++ ++++ P L  L    L G
Sbjct: 622 NNINPKLEEL-QFILDESYHENPETRSLLFVKTRSLVSALKTWIEENPLLQFLKPEILIG 680

Query: 451 STTSVDAL--TPKVQKEVLESFRG-GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
            +   ++L  T   QK  LE+F+   +  LL AT V +EG+ +  C+ V+ ++    V+ 
Sbjct: 681 RSKRNESLGMTLSSQKGALEAFKNSAESKLLIATSVADEGIDIQACNLVLLYEYVGNVTK 740

Query: 508 YIQSRGRARQHNSQFILMLERGN--LKQRNKLF 538
            IQ RGR R  +S+  L+  +G   +K+ N L 
Sbjct: 741 MIQVRGRGRAKDSKCFLITSKGEEAIKEENNLL 773


>gi|358253873|dbj|GAA53880.1| endoribonuclease Dicer [Clonorchis sinensis]
          Length = 2384

 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 135/304 (44%), Gaps = 66/304 (21%)

Query: 1045 REEINCHSRNFHIPSSL-ILEALTTLGCCESF-SMERLELLGDSVLKYAVSCHLFLTYPK 1102
            +  +  HS   + P    +L+ALT + C   F ++ER+E +GDS LK+  + HL+LTYP 
Sbjct: 1724 QHRVTHHSERVYRPGPANVLQALT-MSCSNDFINLERMETIGDSFLKFVATVHLYLTYPN 1782

Query: 1103 KHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP-RRWVAPG------------- 1148
             HEG+LS  RS  VCNS L++LG  + LQ  +    F P   WV PG             
Sbjct: 1783 AHEGKLSHMRSRVVCNSNLYRLGRAKHLQDRMIACKFGPYENWVPPGYVVRHDPRLVTKA 1842

Query: 1149 -----QLSLRPVPCECGV-----DTL---EVPLDGKFFTQDTKV---------------V 1180
                 Q   R    E  +     DTL   EV L  K +T++ K                V
Sbjct: 1843 DHNSLQSPTRQSNKEVNLNIWSTDTLMDDEVLLGMKVYTEEIKPIDNFAVSQWDPNSPEV 1902

Query: 1181 VGKPCDMGH------RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGID--ADLEV 1232
            V     + H      + +  K+IADC EALIG Y    G  +AL +M+W GID     +V
Sbjct: 1903 VKTQKSVDHCLVTIQQAIPDKSIADCVEALIGCYLTARGERSALRLMRWFGIDCLPGPDV 1962

Query: 1233 SLVDDCITRASLRSYVP-------RINEIK------DIESKIGYEFTVKFLLQEAITHAS 1279
             L       A     +P       ++ E +      ++E+K+ Y+F    LL +A TH S
Sbjct: 1963 RLRPRGAPWAIPPPLIPLNDPRRAQLEEARLSWRFDELEAKLNYKFRDPTLLIQAFTHPS 2022

Query: 1280 VQEF 1283
              + 
Sbjct: 2023 YHQL 2026



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 14/156 (8%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           +F+P  YQL + + A  RNTI  L     K+ I + LI+++      +   K  ++    
Sbjct: 23  HFLPYPYQLDLLDTAYERNTIICLSNELTKSFITLSLIREMGY----DHLGKRALYFTQE 78

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR-- 160
            +++   + + R HT   V  +   +    W    W KE++++ V VM+P ++   L   
Sbjct: 79  KNIIETAHCLAR-HTGLSVVHFQYKEPFIGWRFSDWTKELSRHHVTVMSPWLIPCVLSGS 137

Query: 161 -----KAFLSLDIVCFIVIDECHHATG-NHPYTKIM 190
                + FL L+    + + ECHH     HPY ++ 
Sbjct: 138 SPDEFQVFL-LENFYLLAVSECHHVLDPAHPYFQLF 172



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 6/126 (4%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELC 1381
            ++ PKALGD+ ES+ GA+ +D+ L+LD VW +F P++   +      +P  P+R+L+EL 
Sbjct: 2253 VEIPKALGDIFESLAGALFLDSDLSLDTVWTVFYPLMKERIERYTACIPKSPVRQLLELE 2312

Query: 1382 DSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEK 1441
                 F +   T  G +      L       +G    R+ + AK  AA + L+ L     
Sbjct: 2313 PEGTKFERPRRTADGRISVCAHVLGKGRFYGIG----RNYRLAKSLAAKRALRVLRKLYA 2368

Query: 1442 RISKGA 1447
              S GA
Sbjct: 2369 SQSVGA 2374



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 460 PKVQKEVLESFRGGKVNLLFATD----VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
           P  Q+E +  FR G +NLL AT         G  +P C+ V+    P++++ Y+ S+ R+
Sbjct: 690 PATQEETISKFRRGSINLLIATQPAVSAAAGGAELPRCNLVVALQPPRSLAEYLSSKARS 749

Query: 516 R--QHNSQFILMLE 527
           R   H +Q + ++E
Sbjct: 750 RLVDHGAQVVYLVE 763



 Score = 40.4 bits (93), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 947  FVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVN--FNDGGGSGKGSKSGMNTKKPQMH 1004
            F  Y++ KY   +    QPLL +  +    NLLV    N  G     SK G    +    
Sbjct: 1321 FAAYYTNKYEATISSMEQPLLDVDFTVLRLNLLVPRYMNIRGHCLPCSKEGRKRDRRDNL 1380

Query: 1005 VH---MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
             +   + PEL      P SV +    LPSV+ R+ SL+LA +LR  I
Sbjct: 1381 TYKQILIPELCFIHPFPASVWRKAVCLPSVLYRMHSLLLAEELRRRI 1427


>gi|304434770|ref|NP_001182108.1| melanoma differentiation associated gene 5 [Oncorhynchus mykiss]
 gi|296923412|emb|CAZ27715.1| melanoma differentiation associated gene 5 [Oncorhynchus mykiss]
          Length = 1002

 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 133/539 (24%), Positives = 227/539 (42%), Gaps = 85/539 (15%)

Query: 44  FIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
            + R YQ+ V   A + +N I  L TG+GKT +AV + K+   + +  G    ++ L   
Sbjct: 303 IVLRDYQMDVARPALEGKNIIICLPTGSGKTRVAVYITKEHLDSRRKEGRPGKVVVLVNK 362

Query: 103 VHLVHQQYDV---IRVHTDFEVEEYYGAKGVDEWDSQ---CWQKEINKNDVLVMTPQILL 156
           V LV Q Y       +   ++VE   G       DSQ    +   + KND+++ T Q+L 
Sbjct: 363 VPLVEQHYSTEFWKFLKNKYKVERVSG-------DSQLKISFTDIVQKNDIVICTAQLLE 415

Query: 157 DALRKAF------LSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--------KSDNK-- 200
           + L +A       + L  +  IVIDECHH      Y  IM  +          K + K  
Sbjct: 416 NYLERAHSGDDDGIKLSDLSLIVIDECHHTQKGGVYNHIMIRYLKQKHKNAKLKKEQKDT 475

Query: 201 ---PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI----EDKTEMEVFVPSA 253
              P++ G+TASP V  G       E  I  + + LD+         E+K E    + +A
Sbjct: 476 VAIPQILGLTASPGV-GGAKKIEKAEEHILRICANLDAYKIMTGNLGENKKEPHKKIATA 534

Query: 254 KESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDY 313
           +E      +  F G  LKG +       + + +   G+Q N  + +  K +   K+ +  
Sbjct: 535 EER----KEDPF-GDVLKGVMNAIHIHAELNPTCDLGTQ-NYEQWVVQKEQNAAKEEN-- 586

Query: 314 HAKILYCLDELGLICAYEAVKICLEKVLKAQEE------CEIYRQSSLQCKYFLEEVLHV 367
                            + V++C E + +  E         ++   S   KYF EE+   
Sbjct: 587 -----------------QKVRVCAEHLRQYNEALYLGKTIRMWDAFSFLDKYFDEELKKK 629

Query: 368 IG----SALPLAD------KIFLDFGFDYSKAVDL-GYISTKLHEL-LQLFLSFGKSTQV 415
           +      A+   D       +F D   +  +   L  Y +  L +L  ++   F    + 
Sbjct: 630 VAPGDEEAIIKTDTERFLFTLFKDSKVELQELAKLPQYENNSLAKLRTKILHEFTSREKA 689

Query: 416 LCIIFVERIIAAKVVERFVKKVPFLTHLTVAYL----TGSTTSVDALTPKVQKEVLESFR 471
             IIF +   +A  + ++V++      + V        G  ++V  +T   Q++VL  F+
Sbjct: 690 RGIIFTKTRRSAIALAQWVQENSKFEEVGVKACHVIGGGGQSAVKPMTAAEQRDVLNKFQ 749

Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGN 530
             ++NLL AT V EEG+ +  C++VIR++L     + IQ+RGR R  +S + L+   G+
Sbjct: 750 NAEINLLIATTVAEEGLDIAACNFVIRYELVTNEVAMIQARGRGRAEDSSYTLVAGEGS 808


>gi|13542321|ref|NP_112009.1| RNA helicase (ERCC4-like) [Thermoplasma volcanium GSS1]
 gi|14325756|dbj|BAB60659.1| translation initiation factor eIF4A [Thermoplasma volcanium GSS1]
          Length = 513

 Score =  108 bits (269), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 133/523 (25%), Positives = 225/523 (43%), Gaps = 103/523 (19%)

Query: 42  INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
           +N  PR YQ+ V++ +  +NT+ V+ TG GKT+IA MLI+   +  K +      IFLAP
Sbjct: 3   VNIEPREYQINVYKNSIDKNTLIVMPTGLGKTLIAAMLIEKFFKENKKS------IFLAP 56

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           T  LV Q    +         E     G  E DSQ  +       + V TPQ++L+ ++ 
Sbjct: 57  TKPLVLQHMATLVKVLGLNNNEICAFTG--EVDSQERELRWVTGKIFVSTPQVVLNDMKS 114

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKG----VS 217
             + +     IV DE H A GN+ Y  I  EF      K  + G+TASP   KG    + 
Sbjct: 115 GIIDITRFDLIVFDEAHRAVGNYAYVDIASEFLEYK--KKLIIGLTASPGGEKGRFQEIV 172

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
             +  E  + + E   D + +       +E+ +   KE     DQ   CG+ +K  L+  
Sbjct: 173 KNLGIENVVVKTEKDEDVRKYI----KSIEMHLIKLKEP----DQ---CGA-IKDLLK-- 218

Query: 278 WSKFDASLSKL--QGSQL-NCYKDMDDKHKTLRKQLSDYHA------------KILYCLD 322
            S  D+ L  L  QG ++    KDM +  + L  +  +  +            +I Y ++
Sbjct: 219 -SALDSVLKPLKDQGIKVGRTRKDMAESIQNLINRAKEDRSLFPLVRHLTAAIRIDYIIE 277

Query: 323 EL---GLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
            +   GL  AY+ VK           + E  +  S++  Y + + L     A+       
Sbjct: 278 YIETQGLDVAYQYVK-----------DMEESQDQSIKRAYSMMKSLDDFRKAI------- 319

Query: 380 LDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
                +  K V  GY + K+ ++L+           +C    E++IA    ER +    F
Sbjct: 320 -----ENMKNVLPGYRNPKMMKVLE-----------IC---QEKVIAG---ERAIVFTHF 357

Query: 440 --LTHLTVAYLTGSTTSVD--------------ALTPKVQKEVLESFRGGKVNLLFATDV 483
              + + +AYL  S+  +                L+ + Q++++E FR G  N+L AT +
Sbjct: 358 RATSDMLLAYLKNSSDKIKPVRFIGQADRGTDVGLSQEEQRQIIEQFRNGTYNVLIATSI 417

Query: 484 IEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
            EEG+ +P+   V+ ++   +   +IQ +GR  +  S  + +L
Sbjct: 418 AEEGLDIPDTDVVVFYEAVPSEIRFIQRKGRTGRSRSGEVYIL 460


>gi|148695044|gb|EDL26991.1| interferon induced with helicase C domain 1 [Mus musculus]
          Length = 1025

 Score =  108 bits (269), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 143/547 (26%), Positives = 236/547 (43%), Gaps = 83/547 (15%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ++V + A   +N I  L TG+GKT +AV + KD     K       +I L   V L
Sbjct: 310 RPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNKVML 369

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CWQKEINKNDVLVMTPQILLDAL--- 159
             Q   + R   +  ++++Y   G+   D+Q    + + +   DV++ T QIL ++L   
Sbjct: 370 AEQ---LFRKEFNPYLKKWYRIIGLS-GDTQLKISFPEVVKSYDVIISTAQILENSLLNL 425

Query: 160 ---RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--------KSDNKP-----KV 203
                  + L     I+IDECHH      Y  IM+ +          K  NKP     ++
Sbjct: 426 ESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQI 485

Query: 204 FGMTASPVVRKGVSSAM---DCEGQISELESTLDSQVFTIED-KTEMEVFVPSAKESCRF 259
            G+TASP    GV +A    + E  I  + + LD+  FTI+  K  +       KE C+ 
Sbjct: 486 LGLTASP----GVGAAKKQSEAEKHILNICANLDA--FTIKTVKENLGQLKHQIKEPCK- 538

Query: 260 YDQSKFCGSD------LKGKL------------EVSWSKFDASLSKLQGSQLN--CYKDM 299
               KF  +D       K KL            +   S F     +    Q+     KD 
Sbjct: 539 ----KFVIADDTRENPFKEKLLEIMASIQTYCQKSPMSDFGTQHYEQWAIQMEKKAAKDG 594

Query: 300 DDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL----EKVLKAQEECEIYRQSSL 355
           + K +   + L  Y+ + L   D + +I AY  ++       EK      + +     + 
Sbjct: 595 NRKDRVCAEHLRKYN-EALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSDESDDEAS 653

Query: 356 QCKYFLEEVLHVIGSALPL--ADKIFLDFGFDYSK-----AVDLGYISTKLHELLQLFL- 407
            C    +++   +  +L L   D+  ++  FD  K     A +  Y + KL +L    L 
Sbjct: 654 SCN---DQLKGDVKKSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILE 710

Query: 408 SFGKSTQV-LCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YLTGS--TTSVDALTPKV 462
            F +S +    IIF +   +   + +++ +      + V   +L G+  ++ V  +T   
Sbjct: 711 QFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTE 770

Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
           QKEV+  FR G++NLL AT V EEG+ +  C+ VIR+ L     + +Q+RGRAR   S +
Sbjct: 771 QKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTY 830

Query: 523 ILMLERG 529
           +L+   G
Sbjct: 831 VLVTSSG 837


>gi|257096036|ref|NP_082111.2| interferon-induced helicase C domain-containing protein 1 isoform 1
           [Mus musculus]
 gi|62510931|sp|Q8R5F7.1|IFIH1_MOUSE RecName: Full=Interferon-induced helicase C domain-containing
           protein 1; AltName: Full=Helicase with 2 CARD domains;
           Short=Helicard; AltName: Full=Interferon induced with
           helicase C domain protein 1; AltName: Full=Melanoma
           differentiation-associated protein 5; Short=MDA-5;
           AltName: Full=RIG-I-like receptor 2; Short=RLR-2
 gi|18698981|gb|AAL77205.1| HELICARD [Mus musculus]
 gi|132252386|gb|ABO33313.1| melanoma differentiation-associated protein 5 [Mus musculus]
          Length = 1025

 Score =  108 bits (269), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 143/547 (26%), Positives = 236/547 (43%), Gaps = 83/547 (15%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ++V + A   +N I  L TG+GKT +AV + KD     K       +I L   V L
Sbjct: 310 RPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNKVML 369

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CWQKEINKNDVLVMTPQILLDAL--- 159
             Q   + R   +  ++++Y   G+   D+Q    + + +   DV++ T QIL ++L   
Sbjct: 370 AEQ---LFRKEFNPYLKKWYRIIGLS-GDTQLKISFPEVVKSYDVIISTAQILENSLLNL 425

Query: 160 ---RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--------KSDNKP-----KV 203
                  + L     I+IDECHH      Y  IM+ +          K  NKP     ++
Sbjct: 426 ESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQI 485

Query: 204 FGMTASPVVRKGVSSAM---DCEGQISELESTLDSQVFTIED-KTEMEVFVPSAKESCRF 259
            G+TASP    GV +A    + E  I  + + LD+  FTI+  K  +       KE C+ 
Sbjct: 486 LGLTASP----GVGAAKKQSEAEKHILNICANLDA--FTIKTVKENLGQLKHQIKEPCK- 538

Query: 260 YDQSKFCGSD------LKGKL------------EVSWSKFDASLSKLQGSQLN--CYKDM 299
               KF  +D       K KL            +   S F     +    Q+     KD 
Sbjct: 539 ----KFVIADDTRENPFKEKLLEIMASIQTYCQKSPMSDFGTQHYEQWAIQMEKKAAKDG 594

Query: 300 DDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL----EKVLKAQEECEIYRQSSL 355
           + K +   + L  Y+ + L   D + +I AY  ++       EK      + +     + 
Sbjct: 595 NRKDRVCAEHLRKYN-EALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSDKSDDEAS 653

Query: 356 QCKYFLEEVLHVIGSALPL--ADKIFLDFGFDYSK-----AVDLGYISTKLHELLQLFL- 407
            C    +++   +  +L L   D+  ++  FD  K     A +  Y + KL +L    L 
Sbjct: 654 SCN---DQLKGDVKKSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILE 710

Query: 408 SFGKSTQV-LCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YLTGS--TTSVDALTPKV 462
            F +S +    IIF +   +   + +++ +      + V   +L G+  ++ V  +T   
Sbjct: 711 QFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTE 770

Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
           QKEV+  FR G++NLL AT V EEG+ +  C+ VIR+ L     + +Q+RGRAR   S +
Sbjct: 771 QKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTY 830

Query: 523 ILMLERG 529
           +L+   G
Sbjct: 831 VLVTSSG 837


>gi|341897564|gb|EGT53499.1| hypothetical protein CAEBREN_29888 [Caenorhabditis brenneri]
          Length = 1084

 Score =  108 bits (269), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 127/558 (22%), Positives = 234/558 (41%), Gaps = 94/558 (16%)

Query: 47  RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ ++  VA R  NTI    TG+GKT+IA  +IK+  +  +  G +   +F+ P   +
Sbjct: 302 RGYQEELCRVALRGENTIVTAPTGSGKTVIAANIIKNHFETRERQGRRFKALFMTPNSMI 361

Query: 106 VHQQYDVIRVH-----------------TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVL 148
           + QQ D I  +                  DF+V+   GA  +   D+      I   D++
Sbjct: 362 LKQQCDSISSYLDHVYQVTIKVKKIVNDEDFQVQIVQGADNIPVRDA------IKSKDLI 415

Query: 149 VMTPQILLD---------------ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193
           V TPQ++++                + + FLS   + F   DECH    N PY  IM+E 
Sbjct: 416 VATPQMIVNLCNEHKDESRSENDIGIERFFLSTFTIIF--FDECHSTLKNSPYANIMRE- 472

Query: 194 YHKSDNK---------PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI--ED 242
           YH   N          P++ G+TAS     G  + +  +  I+ L + +D +  +I  E+
Sbjct: 473 YHTLKNMGNMPENHHLPQIVGLTASLGTGDG-KNLLGVKDHIASLCANMDVKELSIVKEN 531

Query: 243 KTEMEVFVPSAKESCRFYDQ------SKF--CGSDLKGKLE--VSWSKFDASLSKLQGSQ 292
             E+  + P   +   + ++      S+F  C  D+   +E  +  +  +  +   +G Q
Sbjct: 532 LDELRDYSPIVPDKVSYCERNTDGAISEFTKCMYDMIKAVENLIRVALVNEHIQVQEGQQ 591

Query: 293 LNCYKDMDDKHKTLRKQL------SDYHAKILYCLDELGLICAY----EAVKICLEKVLK 342
           +      DD+               ++   + +  +++ L+          KI + + L+
Sbjct: 592 IQ--PRFDDREYAPTNTFITAPEDKEHSGYLNWVCNQMNLVSITNFTDRRTKISINEALE 649

Query: 343 AQEEC------EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS 396
             +EC       +     +  +Y  +E+ +   +  P   +I+  +   +++ V  G   
Sbjct: 650 VLKECYLTLNYNVNFNPDVALRYLRDEIENRARNFTPEMSRIWDQY---HNRLVTTGTAQ 706

Query: 397 TKLHELLQLFL--SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YLTGST 452
             +   L+ F+     +S     I+FV     AK++   +     L ++ V   +++G  
Sbjct: 707 NSMILNLEQFVVDQNEQSPDSRAIVFVRTRYEAKILNEILNNSERLRNIGVKSDWISGLN 766

Query: 453 TSVD-----ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
            S       A + + Q E L  F  G+V LL +T V EEG+ V  CS VI+++      +
Sbjct: 767 KSTSGSGEIAASKQKQAEKLRKFANGEVRLLVSTSVAEEGLDVAACSLVIKYNYATNEIA 826

Query: 508 YIQSRGRARQHNSQFILM 525
           ++Q RGR R  NS  +L+
Sbjct: 827 HVQRRGRGRARNSTCVLI 844


>gi|354493096|ref|XP_003508680.1| PREDICTED: interferon-induced helicase C domain-containing protein
           1 isoform 2 [Cricetulus griseus]
          Length = 973

 Score =  107 bits (268), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 141/550 (25%), Positives = 237/550 (43%), Gaps = 87/550 (15%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ++V + A + +N I  L TG+GKT +AV + KD     K       ++ L   V L
Sbjct: 258 RPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASEPGKVMVLVNKVML 317

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CWQKEINKNDVLVMTPQILLDAL--- 159
             Q   + R   +  ++++Y   G+   D+Q    + + +   DV++ T QIL ++L   
Sbjct: 318 AEQ---LFRKEFNPFLKKWYRIIGLS-GDTQLKISFPEVVKSYDVIISTAQILENSLLNL 373

Query: 160 ---RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-------------PKV 203
                  + L     I+IDECHH      Y  IM+ +  +                 P++
Sbjct: 374 ESGEDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLKNNKLKKQNKPVVHLPQI 433

Query: 204 FGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIED-KTEMEVFVPSAKESCRFYDQ 262
            G+TASP V  G     + E  I  + + LD+  FTI+  K  +       KE C+    
Sbjct: 434 LGLTASPGV-GGAKKQAEAEKHILNICANLDA--FTIKTVKENLGQLKHQIKEPCK---- 486

Query: 263 SKFCGSDLKGKLEVSWSKFDASLSKLQGS-QLNCY------------------------K 297
            KF  +D     +   + F   L ++  S Q  C                         K
Sbjct: 487 -KFVIAD-----DTRENPFKEKLLEIMTSIQTYCQMSPMSDFGTQPYEQWAILMEKKAAK 540

Query: 298 DMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL----EKVLKAQEECEIYRQS 353
             + K++   + L  Y+ + L   D + +I AY  ++       EK L   E+ +   +S
Sbjct: 541 SGNRKNRVCAEHLRKYN-EALQINDTIRMIDAYSHLETFYSDEKEKKLAVLEDSD---ES 596

Query: 354 SLQCKYFLEEVLHVIGSALPL--ADKIFLDFGFDYSK-----AVDLGYISTKLHELLQLF 406
                   EE+   +  +L L   D+  ++  FD  K     A +  Y + KL +L +  
Sbjct: 597 EDDASGHAEELKDNVKESLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRKTI 656

Query: 407 L-SFGKSTQV-LCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YLTGS--TTSVDALTP 460
           L  F K+ +    IIF +   +   + +++ +      + V   +L G+  ++ V  +T 
Sbjct: 657 LEQFTKTEESSRGIIFTKTRQSTYALSQWITENEKFAEVGVKAHHLIGAGHSSEVKPMTQ 716

Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
             QKEV+  FR GK+NLL AT V EEG+ +  C+ VIR+ L     + +Q+RGRAR   S
Sbjct: 717 NEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADES 776

Query: 521 QFILMLERGN 530
            ++L+   G+
Sbjct: 777 TYVLVTSSGS 786


>gi|20385628|gb|AAM21359.1| melanoma differentiation associated gene 5-like protein [Mus
           musculus]
          Length = 1025

 Score =  107 bits (268), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 143/547 (26%), Positives = 236/547 (43%), Gaps = 83/547 (15%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ++V + A   +N I  L TG+GKT +AV + KD     K       +I L   V L
Sbjct: 310 RPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNKVML 369

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CWQKEINKNDVLVMTPQILLDAL--- 159
             Q   + R   +  ++++Y   G+   D+Q    + + +   DV++ T QIL ++L   
Sbjct: 370 AEQ---LFRKEFNPYLKKWYRIIGLS-GDTQLKISFPEVVKSYDVIISTAQILENSLLNL 425

Query: 160 ---RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--------KSDNKP-----KV 203
                  + L     I+IDECHH      Y  IM+ +          K  NKP     ++
Sbjct: 426 ESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQI 485

Query: 204 FGMTASPVVRKGVSSAM---DCEGQISELESTLDSQVFTIED-KTEMEVFVPSAKESCRF 259
            G+TASP    GV +A    + E  I  + + LD+  FTI+  K  +       KE C+ 
Sbjct: 486 LGLTASP----GVGAAKKQSEAEKHILNICANLDA--FTIKTVKENLGQLKHQIKEPCK- 538

Query: 260 YDQSKFCGSD------LKGKL------------EVSWSKFDASLSKLQGSQLN--CYKDM 299
               KF  +D       K KL            +   S F     +    Q+     KD 
Sbjct: 539 ----KFVIADDTRENPFKEKLLEIMASIQTYCQKSPMSDFGTQHYEQWAIQMEKKAAKDG 594

Query: 300 DDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL----EKVLKAQEECEIYRQSSL 355
           + K +   + L  Y+ + L   D + +I AY  ++       EK      + +     + 
Sbjct: 595 NRKDRVCAEHLRKYN-EALQINDTIRMIDAYSHLEAFYTDEKEKKFAVLNDSDKSDDEAS 653

Query: 356 QCKYFLEEVLHVIGSALPL--ADKIFLDFGFDYSK-----AVDLGYISTKLHELLQLFL- 407
            C    +++   +  +L L   D+  ++  FD  K     A +  Y + KL +L    L 
Sbjct: 654 SCN---DQLKGDVKKSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILE 710

Query: 408 SFGKSTQV-LCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YLTGS--TTSVDALTPKV 462
            F +S +    IIF +   +   + +++ +      + V   +L G+  ++ V  +T   
Sbjct: 711 QFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTE 770

Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
           QKEV+  FR G++NLL AT V EEG+ +  C+ VIR+ L     + +Q+RGRAR   S +
Sbjct: 771 QKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTY 830

Query: 523 ILMLERG 529
           +L+   G
Sbjct: 831 VLVTSSG 837


>gi|241568989|ref|XP_002402624.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215500065|gb|EEC09559.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 1081

 Score =  107 bits (268), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 129/517 (24%), Positives = 232/517 (44%), Gaps = 59/517 (11%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           N+  R YQ  + +    +NT+ +L TG GKT IA +++ +  +   +      I+F APT
Sbjct: 88  NYPVRDYQFNIVQSCLFKNTMVILPTGLGKTFIAAVVMYNFYRWYPTGK----IVFTAPT 143

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKG--VDEWDSQCWQKEINKNDVLVMTPQILL-DAL 159
             LV QQ +         +E+     G       +  W+++     V  +TPQ+++ D L
Sbjct: 144 KPLVAQQIEACYKIMGIPLEDTLEMTGNVPAPRRATAWREK----RVFFLTPQVMMNDLL 199

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-----VVRK 214
           R A    D+ C +VIDE H A GN+ Y ++++E   K  N+ +V  ++A+P      VR+
Sbjct: 200 RNALKPQDVKC-LVIDEAHKALGNYAYCQVVQEIM-KYTNQFRVVALSATPGSDVNAVRQ 257

Query: 215 GVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
            +S+ M    ++   ES +D Q +T + +T  +V VP   E      + KF        L
Sbjct: 258 VLSNLMISHVELRSEES-IDIQKYT-QRRTIDKVVVPLGHEIVEV--KRKF--------L 305

Query: 275 EVSWSKFD-----ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCL--DELGLI 327
           +V     +      +L +L    L  ++ +  K   L+        +++  L  D   LI
Sbjct: 306 QVVCMYLERLERHGALPRLNPESLGKFRLLKLKETFLQSPPQGMAPRLVGQLQGDFSLLI 365

Query: 328 CAYEAVKICLE-------KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
             Y A ++ L          LK   + E   +S  + +Y   E++H      P  ++++ 
Sbjct: 366 SLYHAYELLLAHGLRPFFHFLKGIVDGE---KSQPRVRY---ELMH-----HPGFNELYT 414

Query: 381 DFGFDYSKAVDLGYIS-TKLHEL-LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK-V 437
           D       +  +G+    KL E+ L  F +FGKS +   +IF +   + K +  ++ +  
Sbjct: 415 DLKERLGVSSVVGHPKLIKLEEIVLDHFKNFGKSAETRVMIFSQYRDSVKEISSYLNRHR 474

Query: 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
           P +  +        T +    T K Q  V++ FR G  N+L +T V EEG+ +     ++
Sbjct: 475 PLIKAMNFMGQNQKTGTARGFTQKEQLLVVKRFRDGGYNVLVSTCVGEEGLDIGEIDLIV 534

Query: 498 RFDLPKTVSSYIQSRGR-ARQHNSQFILMLERGNLKQ 533
            +D PK+    +Q  GR  R+   + +++L  G  +Q
Sbjct: 535 CYDAPKSPIRLVQRMGRTGRKRAGRIVVLLSEGKEEQ 571


>gi|291191927|gb|ADD83027.1| melanoma differentiation-associated protein 5 [Gallus gallus]
          Length = 1001

 Score =  107 bits (268), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 145/585 (24%), Positives = 237/585 (40%), Gaps = 103/585 (17%)

Query: 26  SGHDHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIA 84
           SG D A +G +S    +    R YQ++V + A    N I  L TG+GKT +AV + KD  
Sbjct: 284 SGEDEA-EGRASPEPDLTL--RDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHL 340

Query: 85  QAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CWQKE 141
              +    +  +I L   V LV Q    +R   +  ++ +Y   G+   DS+    + + 
Sbjct: 341 DKKRKASEQGKVIVLVNKVPLVEQH---LRKEFNPFLKHWYQVIGLS-GDSELKISFPEV 396

Query: 142 INKNDVLVMTPQILLDALRKAF-----LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196
           +   DV++ T QIL ++L  A      + L     I+IDECHH      Y  IM+ +  +
Sbjct: 397 VKGYDVIICTAQILENSLLNATEEDESVRLSDFSLIIIDECHHTQKEGVYNNIMRRYLKE 456

Query: 197 S--------DNKP-----KVFGMTASPVVRKGVSSAMDCEGQI---------------SE 228
                    +NKP     ++ G+TASP V  G  S    E  I                E
Sbjct: 457 KIKNRKQAKENKPLIPQPQILGLTASPGV-GGARSNSKAEEHILKICANLDACRIMTVKE 515

Query: 229 LESTLDSQV------FTIEDKTEMEVF-------VPSAKESCRFYDQSKFCGSDLKG--- 272
             S L +QV        I D    + F       +   ++ C+ Y +S+F     +    
Sbjct: 516 HASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYCQLYPKSEFGSQPYEQWVI 575

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
           + E   +K +    ++    L  Y D    + T+R   +  H    Y             
Sbjct: 576 REERRAAKEEKRKERVCAEHLKKYNDALQINDTIRMVDAYNHLNNFY------------- 622

Query: 333 VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALP-LADKIFLDFGFDYSKAVD 391
            ++   K  ++ ++ E       +   FL  + H     L  LA K              
Sbjct: 623 KELKRRKTAESDDDEEPLVSKQDETDEFLMRLFHAKKKQLKELARKP------------- 669

Query: 392 LGYISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YL 448
             Y + KL +L   L   F K+ +   IIF +   +A  +  ++   P    + +   +L
Sbjct: 670 -EYDNEKLMKLRNTLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFL 728

Query: 449 TGS--TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
            G+   +    +T   Q+EV++ FRGG +NLL AT V EEG+ +  C+ VIR+ L     
Sbjct: 729 IGAGHNSETKPMTQNEQREVIDKFRGGSINLLIATTVAEEGLDIKECNIVIRYGLVTNEI 788

Query: 507 SYIQSRGRARQHNSQFILMLERG---------NLKQRNKLFDIIR 542
           + +Q+RGRAR   S + L+   G         N+ + N ++  IR
Sbjct: 789 AMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYKAIR 833


>gi|348569861|ref|XP_003470716.1| PREDICTED: probable ATP-dependent RNA helicase DDX58-like [Cavia
           porcellus]
          Length = 914

 Score =  107 bits (268), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 137/574 (23%), Positives = 248/574 (43%), Gaps = 79/574 (13%)

Query: 47  RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQL++   AK  +NTI    TG GKT +++++ +         G K  ++F A  V +
Sbjct: 245 RNYQLELALPAKEGKNTIICAPTGCGKTFVSLLICEHHLLKF-PQGRKGKVVFFANHVPV 303

Query: 106 VHQQYDVIRVHTD---FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
             QQ  V   + +   + V    GA      +     + I  ND++V+TPQIL++ L+  
Sbjct: 304 YEQQKTVFSRYFERLGYSVTGISGATA----EKVPVAETIENNDIIVLTPQILVNNLKNG 359

Query: 163 FL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVV--RK 214
            + SL +   ++ DECH+ + +HPY  IM  +  +     SD  P+V G+TAS  V   K
Sbjct: 360 TIPSLSVFTLMIFDECHNTSKHHPYNMIMFNYLDQKLGESSDPLPQVIGLTASVGVGDAK 419

Query: 215 GVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
            +  AM     I +L ++LD+ V            + + KE+    +Q  +    +  K+
Sbjct: 420 NIEEAM---AYICKLCASLDASV------------IATVKENLEELEQVVYKPQKISRKV 464

Query: 275 E-VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
           E  + +KF   L +L               + L K +S+    +    D +     YE  
Sbjct: 465 EPRTTNKFKLILCELMKET-----------EYLAKSISEELGYLFQIQDRVFGTQKYEQW 513

Query: 334 KICLEKVLK------AQEECEIYRQSSLQCKYF--LEEVLHVIGSALPLADKI------- 378
            + + K  +       +EE  I +   L   +     + L +I     + D +       
Sbjct: 514 IVAVHKACRLFQMPDKEEESRICKAMYLYTSHLRKYNDTL-IISEDAQMKDALNYLKDFF 572

Query: 379 -------FLDFGFDYSKAVDLGYIST----KLHELLQLFLSFGKSTQVLCIIFVERIIAA 427
                  F D   D ++  ++    T    + H +LQ        T+   I+FV+     
Sbjct: 573 SNVRTAAFDDIEQDLTRRFEVYTCVTSCVLRTHLILQEEYHLNPETRT--ILFVKTRALV 630

Query: 428 KVVERFVKKVPFLTHLTVAYLT--GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE 485
             +++++++   L  L    LT  G T++   +T   QK VL++FR    N+L AT V +
Sbjct: 631 DALKKWIEENSALNFLKPGILTGRGKTSNKTGMTLPAQKCVLDTFRSNGDNILIATSVAD 690

Query: 486 EGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSER 545
           EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+    ++ ++  + +II+ E+
Sbjct: 691 EGIDIAQCNLVILYEYVGNVIRMIQTRGRGRAKGSKCYLLSSNADVIEKEHI-NIIK-EK 748

Query: 546 SVTD--TALSRDPEACFLKACTYVKTKSYIVEST 577
            + D  + L    E  F K   +++ +   +  +
Sbjct: 749 MMNDSISRLQTWDEVTFQKRIYHIQNQEKFIRDS 782


>gi|440690962|pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
           Mda5
 gi|440690963|pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
           Mda5
          Length = 699

 Score =  107 bits (268), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 138/535 (25%), Positives = 231/535 (43%), Gaps = 76/535 (14%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ++V + A + +N I  L TG GKT +AV + KD     K       +I L   V L
Sbjct: 9   RPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLL 68

Query: 106 VHQQYDVIRVHTDFE--VEEYYGAKGVDEWDSQ---CWQKEINKNDVLVMTPQILLDAL- 159
           V Q +       +F+  ++++Y   G+   D+Q    + + +   D+++ T QIL ++L 
Sbjct: 69  VEQLF-----RKEFQPFLKKWYRVIGLS-GDTQLKISFPEVVKSCDIIISTAQILENSLL 122

Query: 160 -----RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--------KSDNK-----P 201
                  A + L     I+IDECHH      Y  IM+ +          K +NK     P
Sbjct: 123 NLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLP 182

Query: 202 KVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIED-KTEMEVFVPSAKESCRFY 260
           ++ G+TASP V  G +     E  I +L + LD+  FTI+  K  ++      +E C+ +
Sbjct: 183 QILGLTASPGV-GGATKQAKAEEHILKLCANLDA--FTIKTVKENLDQLKNQIQEPCKKF 239

Query: 261 DQSKFCGSD-LKGK-LEV-----------SWSKFDASLSKLQGSQL--NCYKDMDDKHKT 305
             +     D  K K LE+             S F     +    Q+     K+ + K + 
Sbjct: 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERV 299

Query: 306 LRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL 365
             + L  Y+ + L   D + +I AY  +              E +       K+ + E  
Sbjct: 300 CAEHLRKYN-EALQINDTIRMIDAYTHL--------------ETFYNEEKDKKFAVIEDD 344

Query: 366 HVIGSALPLADKIFLDFGFDYSK-----AVDLGYISTKLHELLQLFLSFGKSTQ--VLCI 418
                 L   D+  +   F+ +K     A +  Y + KL +L    +     T+     I
Sbjct: 345 LKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGI 404

Query: 419 IFVERIIAAKVVERFVKKVPFLTHLTVA--YLTGS--TTSVDALTPKVQKEVLESFRGGK 474
           IF +   +A  + +++ +      + V   +L G+  ++    +T   QKEV+  FR GK
Sbjct: 405 IFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK 464

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG 529
           +NLL AT V EEG+ +  C+ VIR+ L     + +Q+RGRAR   S ++L+   G
Sbjct: 465 INLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSG 519


>gi|308466625|ref|XP_003095565.1| CRE-DRH-3 protein [Caenorhabditis remanei]
 gi|308245160|gb|EFO89112.1| CRE-DRH-3 protein [Caenorhabditis remanei]
          Length = 979

 Score =  107 bits (268), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 127/521 (24%), Positives = 232/521 (44%), Gaps = 49/521 (9%)

Query: 44  FIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
            + R YQ ++ + A + +N + +  TG+GKT +A+          ++ G    ++ + P 
Sbjct: 207 LVLRTYQEELVQTALEGKNCVIIAPTGSGKTEVAIYAAMKHISRREAFGEHSRVVLVVPK 266

Query: 103 VHLVHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL- 159
           + LV QQ +    + +  + V  ++G++  D  + +  + ++  + ++VMTPQIL++ L 
Sbjct: 267 IPLVTQQKERFLKYCNGKYVVNGFHGSEKSDSGEGR--RDDVLASHIVVMTPQILINMLQ 324

Query: 160 ---RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGV 216
              R   L +     ++ DE H+ TGNH Y  + +       +KP++ G+TAS  V    
Sbjct: 325 SVRRNERLYVSDFSMMIFDEVHYTTGNHAYVNLNRIVQEWEYDKPQIIGLTASLNV--NA 382

Query: 217 SSAMDCEGQISELESTL----DSQVFTIEDKT---EMEVFVPSAKESCRFYDQSK-FCGS 268
           S   D    ++ + S L       + TI  ++   E+  +V    ++       +    S
Sbjct: 383 SQQTDINSMLNGIYSMLALLNAPHLSTITHQSSIDELNKYVSKPDDTIEVVQPGENVLRS 442

Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNC--------YKDMDDKHKTLRKQLSDYHAKILYC 320
            +   L     K  A L KL  S+ NC        +K+   K   L + L     + L  
Sbjct: 443 HIDNYLNTKHYKLVAELEKLSKSRHNCFPAGSFRSFKNAKPKEFMLYESLVQSLIQDLNK 502

Query: 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
           L+    + A +  K  +   ++A+   ++    ++    F+EE +  + S   L    F 
Sbjct: 503 LNTPDKMVAQKWTKY-IRVYIEARGIVDV--MPAMVAFNFMEESIRQLNSEHTLDQ--FS 557

Query: 381 DF----GFDYSKAVDLGYISTKLHEL-LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435
           DF     +D  K    G     + +L   L   F +      IIFV +   A+ V  F+ 
Sbjct: 558 DFLTDKVYDPLKQRSEGVEPEIVKKLKTTLVNQFKEQPDSRVIIFVTQRNTAQRVSEFLN 617

Query: 436 KVPFLTHL--------TVAYLTGS--TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE 485
           +   L           TV Y+ G+  T SV   +P+ Q+ VLE F  GK+ ++ AT V+E
Sbjct: 618 ESGILEQFLNTTTRQKTVGYVLGTNNTGSVQQ-SPQEQQRVLEQFNSGKLKVIVATSVVE 676

Query: 486 EGMHVPNCSYVIRFDLPKTVS-SYIQSRGRARQHNSQFILM 525
           EG+ V +C+ +I+++     +   +Q RGRAR  NS+ +L+
Sbjct: 677 EGLDVTSCNLIIKYNCSSASAIQLVQRRGRARAKNSRSVLL 717


>gi|132252411|gb|ABO33314.1| melanoma differentiation-associated protein 5 [Mus musculus]
 gi|158699346|gb|ABW76702.1| melanoma differentiation-associated protein 5 [Mus musculus]
          Length = 1025

 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 143/547 (26%), Positives = 236/547 (43%), Gaps = 83/547 (15%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ++V + A   +N I  L TG+GKT +AV + KD     K       +I L   V L
Sbjct: 310 RPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNKVML 369

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CWQKEINKNDVLVMTPQILLDAL--- 159
             Q   + R   +  ++++Y   G+   D+Q    + + +   DV++ T QIL ++L   
Sbjct: 370 AEQ---LFRKEFNPYLKKWYRIIGLS-GDTQLKISFPEVVKSYDVIISTAQILENSLLNL 425

Query: 160 ---RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--------KSDNKP-----KV 203
                  + L     I+IDECHH      Y  IM+ +          K  NKP     ++
Sbjct: 426 ESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQI 485

Query: 204 FGMTASPVVRKGVSSAM---DCEGQISELESTLDSQVFTIED-KTEMEVFVPSAKESCRF 259
            G+TASP    GV +A    + E  I  + + LD+  FTI+  K  +       KE C+ 
Sbjct: 486 LGLTASP----GVGAAKKQSEAEKHILNICANLDA--FTIKTVKENLGQLKHQIKEPCK- 538

Query: 260 YDQSKFCGSD------LKGKL------------EVSWSKFDASLSKLQGSQLN--CYKDM 299
               KF  +D       K KL            +   S F     +    Q+     KD 
Sbjct: 539 ----KFVIADDTRENPFKEKLLEIMASIQTYCQKSPMSDFGTQHYEQWAIQMEKKAAKDG 594

Query: 300 DDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL----EKVLKAQEECEIYRQSSL 355
           + K +   + L  Y+ + L   D + +I AY  ++       EK      + +     + 
Sbjct: 595 NRKDRVCAEHLRKYN-EALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSDESDDEAS 653

Query: 356 QCKYFLEEVLHVIGSALPL--ADKIFLDFGFDYSK-----AVDLGYISTKLHELLQLFL- 407
            C    +++   +  +L L   D+  ++  FD  K     A +  Y + KL +L    L 
Sbjct: 654 SCN---DQLKGDVKKSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILE 710

Query: 408 SFGKSTQV-LCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YLTGS--TTSVDALTPKV 462
            F +S +    IIF +   +   + +++ +      + V   +L G+  ++ V  +T   
Sbjct: 711 QFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTE 770

Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
           QKEV+  FR G++NLL AT V EEG+ +  C+ VIR+ L     + +Q+RGRAR   S +
Sbjct: 771 QKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTY 830

Query: 523 ILMLERG 529
           +L+   G
Sbjct: 831 VLVTSSG 837


>gi|157822253|ref|NP_001102669.1| interferon-induced helicase C domain-containing protein 1 [Rattus
           norvegicus]
 gi|149022117|gb|EDL79011.1| similar to HELICARD (predicted) [Rattus norvegicus]
          Length = 1027

 Score =  107 bits (267), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 146/576 (25%), Positives = 247/576 (42%), Gaps = 90/576 (15%)

Query: 23  MGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIK 81
           MGS   +  + G   ++       R YQ++V + A   +N I  L TG+GKT +AV + K
Sbjct: 287 MGSDSDEDTIMGTKRASPKPELQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITK 346

Query: 82  DIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CW 138
           D     K       +I L   V L  Q   + R   +  ++++Y   G+   D+Q    +
Sbjct: 347 DHLDKKKQACESGKVIVLVNKVMLAEQ---LFRKEFNPFLKKWYRIIGLS-GDTQLKISF 402

Query: 139 QKEINKNDVLVMTPQILLDAL------RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKE 192
            + +   DV++ T QIL ++L          + L     I+IDECHH      Y  IM+ 
Sbjct: 403 PEVVKSYDVIISTAQILENSLLNLESGEDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRR 462

Query: 193 FYH--------KSDNK-----PKVFGMTASPVVRKGVSSAM---DCEGQISELESTLDSQ 236
           +          K  NK     P++ G+TASP    GV +A    + E  I  + + LD+ 
Sbjct: 463 YLKQKLKNHKLKKQNKPTIHLPQILGLTASP----GVGAAKKQSEAEKHILNICANLDA- 517

Query: 237 VFTIED-KTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGS-QLN 294
            FTI+  K  +       KE C+     KF  +D     +   + F   L ++  S Q  
Sbjct: 518 -FTIKTVKENLSQLKHQIKEPCK-----KFVIAD-----DTRENPFKEKLLEIMASIQTY 566

Query: 295 CYK----DMDDKH------KTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE-KVLKA 343
           C K    D   +H      +  +K   D + +   C + L      EA++I    +++ A
Sbjct: 567 CQKSPLSDFGTQHYEQWAIQMEKKAAKDGNRRDRVCAEHLRKY--NEALQINDTIRMIDA 624

Query: 344 QEECEIYRQSSLQCKYFL----------------EEVLHVIGSALPL--ADKIFLDFGFD 385
               E +     + K+                  +++   +  +L L   D+  ++  FD
Sbjct: 625 YSHLETFYTDEKEKKFAALNDSDESDDDEASSCHDQLKGNVKKSLKLDETDEFLMNLFFD 684

Query: 386 YSK-----AVDLGYISTKLHELLQLFL-SFGKSTQ-VLCIIFVERIIAAKVVERFVKKVP 438
             K     A +  Y + KL +L    L  F +S +    IIF +   +   + +++ +  
Sbjct: 685 NKKMLKKLAENPKYENEKLIKLRNTILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENE 744

Query: 439 FLTHLTVA--YLTGS--TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
               + V   +L G+  ++ V  +T   QKEV+  FR G++NLL AT V EEG+ +  C+
Sbjct: 745 KFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECN 804

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGN 530
            VIR+ L     + +Q+RGRAR   S ++L+   G+
Sbjct: 805 IVIRYGLVTNEIAMVQARGRARADESTYVLVTSSGS 840


>gi|341892086|gb|EGT48021.1| hypothetical protein CAEBREN_31852 [Caenorhabditis brenneri]
          Length = 1011

 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 129/559 (23%), Positives = 234/559 (41%), Gaps = 91/559 (16%)

Query: 47  RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ ++  VA R  NTI    TG+GKT+IA  +IK+  +  +  G +   +F+ P   +
Sbjct: 302 RGYQQELCRVALRGENTIVTAPTGSGKTVIAANIIKNHFETRERQGRRFKALFMTPNSMI 361

Query: 106 VHQQYDVIRVHTD-----------FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
           + QQ D I  + D            E +E +  + V   D+   +  I   D++V TPQ+
Sbjct: 362 LKQQCDSISSYLDHVYQVTIKVQKIENDEDFQVQIVQGADNIPVRDAIKSKDLIVATPQM 421

Query: 155 LLD---------------ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199
           +++                + + FLS   + F   DECH    N PY  IM+E YH   N
Sbjct: 422 IVNLCNEHKDESRSENDIGIERFFLSTFTIIF--FDECHSTLKNSPYANIMRE-YHTLKN 478

Query: 200 K---------PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI--EDKTEMEV 248
                     P++ G+TAS    +G  + +  +  I+ L + +D +  +I  E+  E+  
Sbjct: 479 MGNMPENHHLPQIVGLTASLGTGEG-KNLLGVKDHIASLCANMDVKELSIVKENLDELRD 537

Query: 249 FVPSAKES-------------CRFYDQSKFCGSDLKGKLEV----SWSKFDASLSKLQGS 291
           + P   +S               F+   K   + +KG   V    S S  +  +   +G 
Sbjct: 538 YSPIVPDSELSLEKLLKTAYTTAFHRSQK--SAIVKGIPMVPSRNSRSVLNEHIQVQEGQ 595

Query: 292 QLNCYKDMDDKHKTLRKQL------SDYHAKILYCLDELGLICAY----EAVKICLEKVL 341
           Q+      DD+               ++   + +  +++ L+          KI + + L
Sbjct: 596 QIQ--PRFDDREYAPTNTFITAPEDKEHSGYLNWVCNQMNLVSITNFTDRRTKISINEAL 653

Query: 342 KAQEEC------EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
           +  +EC       +     +  +Y  +E+ + + +  P   +I+  +   +++ V  G  
Sbjct: 654 EVLKECYLTLNYNVNFNPEVALRYLRDEIENRVRNFTPEMSRIWDQY---HNRLVTTGTA 710

Query: 396 STKLHELLQLFL--SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YLTGS 451
              +   L+ F+     +S     I+FV     AK++   +     L ++ V   +++G 
Sbjct: 711 QNSMILNLEQFVVDQNEQSPDSRAIVFVRTRYEAKILNEILNNSERLRNIGVKSDWISGL 770

Query: 452 TTSVD-----ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
             S       A + + Q E L  F  G+V LL +T V EEG+ V  CS VI+++      
Sbjct: 771 NKSTSGSGEIAASKQKQAEKLRKFANGEVRLLVSTSVAEEGLDVAACSLVIKYNYATNEI 830

Query: 507 SYIQSRGRARQHNSQFILM 525
           +++Q RGR R  NS  +L+
Sbjct: 831 AHVQRRGRGRARNSTCVLI 849


>gi|257096038|ref|NP_001157949.1| interferon-induced helicase C domain-containing protein 1 isoform 2
           [Mus musculus]
          Length = 976

 Score =  107 bits (266), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 143/547 (26%), Positives = 236/547 (43%), Gaps = 83/547 (15%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ++V + A   +N I  L TG+GKT +AV + KD     K       +I L   V L
Sbjct: 261 RPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNKVML 320

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CWQKEINKNDVLVMTPQILLDAL--- 159
             Q   + R   +  ++++Y   G+   D+Q    + + +   DV++ T QIL ++L   
Sbjct: 321 AEQ---LFRKEFNPYLKKWYRIIGLS-GDTQLKISFPEVVKSYDVIISTAQILENSLLNL 376

Query: 160 ---RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--------KSDNKP-----KV 203
                  + L     I+IDECHH      Y  IM+ +          K  NKP     ++
Sbjct: 377 ESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQI 436

Query: 204 FGMTASPVVRKGVSSAM---DCEGQISELESTLDSQVFTIED-KTEMEVFVPSAKESCRF 259
            G+TASP    GV +A    + E  I  + + LD+  FTI+  K  +       KE C+ 
Sbjct: 437 LGLTASP----GVGAAKKQSEAEKHILNICANLDA--FTIKTVKENLGQLKHQIKEPCK- 489

Query: 260 YDQSKFCGSD------LKGKL------------EVSWSKFDASLSKLQGSQLN--CYKDM 299
               KF  +D       K KL            +   S F     +    Q+     KD 
Sbjct: 490 ----KFVIADDTRENPFKEKLLEIMASIQTYCQKSPMSDFGTQHYEQWAIQMEKKAAKDG 545

Query: 300 DDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL----EKVLKAQEECEIYRQSSL 355
           + K +   + L  Y+ + L   D + +I AY  ++       EK      + +     + 
Sbjct: 546 NRKDRVCAEHLRKYN-EALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSDKSDDEAS 604

Query: 356 QCKYFLEEVLHVIGSALPL--ADKIFLDFGFDYSK-----AVDLGYISTKLHELLQLFL- 407
            C    +++   +  +L L   D+  ++  FD  K     A +  Y + KL +L    L 
Sbjct: 605 SCN---DQLKGDVKKSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILE 661

Query: 408 SFGKSTQV-LCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YLTGS--TTSVDALTPKV 462
            F +S +    IIF +   +   + +++ +      + V   +L G+  ++ V  +T   
Sbjct: 662 QFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTE 721

Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
           QKEV+  FR G++NLL AT V EEG+ +  C+ VIR+ L     + +Q+RGRAR   S +
Sbjct: 722 QKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTY 781

Query: 523 ILMLERG 529
           +L+   G
Sbjct: 782 VLVTSSG 788


>gi|379055841|emb|CCD32424.1| dicer-1b, partial [Acyrthosiphon pisum]
          Length = 272

 Score =  107 bits (266), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 89/175 (50%), Gaps = 22/175 (12%)

Query: 1054 NFHI-PS-SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            N+H  PS S++L+ALTT    + + +ERLE +GDS LKYAV+ +L+ T+   HEG LS  
Sbjct: 57   NYHPGPSPSILLQALTTANAIDGYDLERLETIGDSFLKYAVTAYLYCTHNNVHEGILSDL 116

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGK 1171
            RS  V N  L++LG  +     +  + F+PR    P        PC  G   LE      
Sbjct: 117  RSNHVSNLNLYRLGKLKMFGERMISTKFEPRSNWLP--------PCYIGPHKLE------ 162

Query: 1172 FFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1226
                  K V+     +       K+IADC EALIGAY +  G   AL  M WLGI
Sbjct: 163  ------KAVINSNISITQHITNDKSIADCVEALIGAYLISCGTRGALLFMSWLGI 211


>gi|379055829|emb|CCD32418.1| dicer-1b, partial [Acyrthosiphon pisum]
 gi|379055831|emb|CCD32419.1| dicer-1b, partial [Acyrthosiphon pisum]
 gi|379055837|emb|CCD32422.1| dicer-1b, partial [Acyrthosiphon pisum]
 gi|379055843|emb|CCD32425.1| dicer-1b, partial [Acyrthosiphon pisum]
          Length = 272

 Score =  107 bits (266), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 89/175 (50%), Gaps = 22/175 (12%)

Query: 1054 NFHI-PS-SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            N+H  PS S++L+ALTT    + + +ERLE +GDS LKYAV+ +L+ T+   HEG LS  
Sbjct: 57   NYHPGPSPSILLQALTTANAIDGYDLERLETIGDSFLKYAVTAYLYCTHNNVHEGILSDL 116

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGK 1171
            RS  V N  L++LG  +     +  + F+PR    P        PC  G   LE      
Sbjct: 117  RSNHVSNLNLYRLGKLKMFGERMISTKFEPRSNWLP--------PCYIGPHKLE------ 162

Query: 1172 FFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1226
                  K V+     +       K+IADC EALIGAY +  G   AL  M WLGI
Sbjct: 163  ------KAVINSNISITQHITNDKSIADCVEALIGAYLISCGTRGALLFMSWLGI 211


>gi|51329784|gb|AAH80200.1| Ifih1 protein [Mus musculus]
          Length = 976

 Score =  107 bits (266), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 143/547 (26%), Positives = 236/547 (43%), Gaps = 83/547 (15%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ++V + A   +N I  L TG+GKT +AV + KD     K       +I L   V L
Sbjct: 261 RPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNKVML 320

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CWQKEINKNDVLVMTPQILLDAL--- 159
             Q   + R   +  ++++Y   G+   D+Q    + + +   DV++ T QIL ++L   
Sbjct: 321 AEQ---LFRKEFNPYLKKWYRIIGLS-GDTQLKISFPEVVKSYDVIISTAQILENSLLNL 376

Query: 160 ---RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--------KSDNKP-----KV 203
                  + L     I+IDECHH      Y  IM+ +          K  NKP     ++
Sbjct: 377 ESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQI 436

Query: 204 FGMTASPVVRKGVSSAM---DCEGQISELESTLDSQVFTIED-KTEMEVFVPSAKESCRF 259
            G+TASP    GV +A    + E  I  + + LD+  FTI+  K  +       KE C+ 
Sbjct: 437 LGLTASP----GVGAAKKQSEAEKHILNICANLDA--FTIKTVKENLGQLKHQIKEPCK- 489

Query: 260 YDQSKFCGSD------LKGKL------------EVSWSKFDASLSKLQGSQLN--CYKDM 299
               KF  +D       K KL            +   S F     +    Q+     KD 
Sbjct: 490 ----KFVIADDTRENPFKEKLLEIMASIQTYCQKSPMSDFGTQHYEQWAIQMEKKAAKDG 545

Query: 300 DDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL----EKVLKAQEECEIYRQSSL 355
           + K +   + L  Y+ + L   D + +I AY  ++       EK      + +     + 
Sbjct: 546 NRKDRVCAEHLRKYN-EALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSDESDDEAS 604

Query: 356 QCKYFLEEVLHVIGSALPL--ADKIFLDFGFDYSK-----AVDLGYISTKLHELLQLFL- 407
            C    +++   +  +L L   D+  ++  FD  K     A +  Y + KL +L    L 
Sbjct: 605 SCN---DQLKGDVKKSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILE 661

Query: 408 SFGKSTQV-LCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YLTGS--TTSVDALTPKV 462
            F +S +    IIF +   +   + +++ +      + V   +L G+  ++ V  +T   
Sbjct: 662 QFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTE 721

Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
           QKEV+  FR G++NLL AT V EEG+ +  C+ VIR+ L     + +Q+RGRAR   S +
Sbjct: 722 QKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTY 781

Query: 523 ILMLERG 529
           +L+   G
Sbjct: 782 VLVTSSG 788


>gi|16082461|ref|NP_394951.1| RNA helicase (RIG-I) [Thermoplasma acidophilum DSM 1728]
 gi|10640841|emb|CAC12619.1| RNA helicase (RIG-I) related protein [Thermoplasma acidophilum]
          Length = 508

 Score =  107 bits (266), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 140/527 (26%), Positives = 227/527 (43%), Gaps = 71/527 (13%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQL VF+ +  +NT+ V+ TG GKT+IA M I+      K  G KK  + +APT  L
Sbjct: 5   PREYQLNVFKNSIGQNTLIVMPTGLGKTIIAAMFIE------KFYGEKKRSLMVAPTKPL 58

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V Q    I   T     E     G  E D++  +       + V TPQ++ + +R   L 
Sbjct: 59  VLQHARTIADSTGISENEIGVFTG--EIDAEERELIWVTKKIFVSTPQVVFNDMRSGILD 116

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQ 225
           +     I+ DE H A GN+ Y  I +E+      K  + G+TASP    G S       +
Sbjct: 117 ITKFDLIIFDEAHRAVGNYAYVDIAQEYLKY--KKKLIIGLTASP----GSSRE-----K 165

Query: 226 ISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASL 285
           I E+ + L   +  +  KTEM+      ++  +  D       +  G  E+  +  DA +
Sbjct: 166 IDEIMANLG--ISKVIAKTEMD---EDVRKYVKTIDVKLIKIREPDGTKEIV-NMIDAVM 219

Query: 286 SKL----QGSQLNCYKDMDDKHKTLRKQL-SDYHAKILYC----------LDELGLICAY 330
           SKL    + S  +  +   D   T++K + S    + L+           LD L      
Sbjct: 220 SKLLEPVKSSNFSIGRSRKDLVATMQKVINSAKEDRSLFQLVRRITAAIRLDYLKEYIET 279

Query: 331 EAVKIC---LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
           + + +    LE++ K+Q+   I R  S+         L  +     L  K+ L       
Sbjct: 280 QGIDVALHYLEEMEKSQDP-GIRRAISM---------LSSLDEFATLRTKLML------- 322

Query: 388 KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAY 447
            A D GY + K+ + L +  S         I+F    I + ++  +++K    T L    
Sbjct: 323 -AAD-GYTNPKMEKTLSIMES-NVHGNARAIVFTHYRITSDLLMDYIQKNG--TSLKPVR 377

Query: 448 LTGSTT--SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTV 505
             G     S + L+   QK+++E F+    N+L AT + EEG+ +P+  +VI ++   + 
Sbjct: 378 FIGQADRGSDEGLSQDQQKKIIEDFKNNVYNVLIATSIAEEGLDIPDTDFVIFYEAVPSE 437

Query: 506 SSYIQSRGR-ARQHNSQ-FILMLERGNLKQRNKLFDIIRSERSVTDT 550
             YIQ +GR  R  N Q +IL+ E  N +     +  IR    +T T
Sbjct: 438 IRYIQRKGRTGRSRNGQVYILVFE--NSRDMAYYYSSIRKVSRMTQT 482


>gi|388330447|gb|AFK29469.1| Dicer1 [Locusta migratoria]
          Length = 2324

 Score =  106 bits (265), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 153/367 (41%), Gaps = 95/367 (25%)

Query: 415  VLC-IIFVERIIAAKVVERFVKKVPF--LTHLTVAYLTGSTTSVDALTP--------KVQ 463
             LC I+FVE+   AK++   + ++      +  VA         D LT         + Q
Sbjct: 665  ALCGIVFVEKKFTAKILYHLLNEIRRNDEDYSFVAPQYTVDKEADPLTEPREAENEHRKQ 724

Query: 464  KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
            +EVL+ FR  + NLL  T V+EEG+ VP C+ VIRFD+P    SY+QS+GRAR  ++ ++
Sbjct: 725  EEVLKRFRMRECNLLVGTSVLEEGIDVPKCNLVIRFDVPSMYRSYVQSKGRARAPDAHYL 784

Query: 524  LMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-----------------TY 566
            LM+E              R+E  +   A   + E   L+ C                   
Sbjct: 785  LMIEES------------RTEEFIESLAQYFEIEQLLLRKCANKEPSEEEEMEADKWTNV 832

Query: 567  VKTKSYIVESTGASVTTDSSVNLIHR-----------YCEMLPSDKYYTPKPIFKYKSAE 615
            +   S       +SV   +++ L++R           YC  LPSD +    P++  K+ +
Sbjct: 833  IDAYSPPASPNHSSVNMSTAIGLVNRYSPSCDAAPGVYCAKLPSDTFTRLSPLWSLKTED 892

Query: 616  EA----YECELTLPSNAPFQ-TIVGPTSRN---------------KN-----------LS 644
                  Y C + LP N+P +  IV    R                KN           L+
Sbjct: 893  IDGKIHYICTVRLPINSPVKHNIVADVKRTLYYVRYETFVPICIVKNDTQGLPMPTRVLA 952

Query: 645  KQLVCLEACEKLHQVGALNDHLLPSVEE-------------PSENNLISKKNESLPGAGT 691
            +++  LE C  LHQ   L+D+L+P  +E             P +    + ++   P  GT
Sbjct: 953  RRIAALETCRILHQARELDDNLMPVGKERFYIHEECDQFCDPDDLEDTASRDSLEPKPGT 1012

Query: 692  TKRKELH 698
            TKR++ +
Sbjct: 1013 TKRRQYY 1019



 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 110/210 (52%), Gaps = 12/210 (5%)

Query: 36  SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGF 92
           S + ++ +  PR +Q+++ + AK RN I  L + +G+  IA  LI++ + AI+    NG 
Sbjct: 6   SDNIHTRSLTPREHQVELLDAAKERNIIVCLCSSSGRVFIATKLIQEFSNAIRRPIKNGG 65

Query: 93  KKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTP 152
           K+  ++L  ++ LV  Q   I   TD  V EY     V +W     +KE+ +  VLVMT 
Sbjct: 66  KR-SVYLVDSMALVEHQAAYINNLTDLTVGEYSEFSSVTDW-----EKELMEKQVLVMTS 119

Query: 153 QILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVV 212
           ++  D +    L ++ +  +++DECH+   NHP  KIM+ +   S  KP++ G+TA P+ 
Sbjct: 120 KVCSDIISSGILRIEDINVLILDECHNVLQNHPMRKIMR-WVSLSPIKPRILGLTA-PIF 177

Query: 213 RKGVSSAMDCEGQISELESTLDSQVFTIED 242
                     EG++  LE+ L S   T  D
Sbjct: 178 NSTADPGR-LEGEMQRLEAALLSTAETASD 206



 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 47/265 (17%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L+ TY   HEG+LS  RS  V N 
Sbjct: 1784 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNL 1843

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVP---CECGV-----DTLEVP--- 1167
             L++LG  +     +  + F+P   W+ P     R +     E G+     +  ++P   
Sbjct: 1844 NLYRLGRRKVFGESMIATKFEPHDNWLPPCYYVPRELEQALVEAGIPASHWNRADIPNLL 1903

Query: 1168 -------------------------LDG-KFFTQDTKVVVGKPCDMGHRWMG-----SKT 1196
                                      DG    ++D   V   PC + +  +       K+
Sbjct: 1904 PLSREEICELVRERCNQFQRCKDCDEDGMPTQSEDYDSVDKMPCFIPYNLITQHSIPDKS 1963

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD 1256
            +ADC EALIGAY +  G   AL  M WLGI     V   ++ I + S R+ VP+   +  
Sbjct: 1964 VADCVEALIGAYLIACGPRGALLFMAWLGIC----VLPREEIILKTSSRNAVPKERPVGS 2019

Query: 1257 IESKIGYEFTVKFLLQEAITHASVQ 1281
            ++    YE +    + + + + ++Q
Sbjct: 2020 LKPTFVYEDSDGTAVWKQVRYGTLQ 2044



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 5/105 (4%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKALGD+ ES+ GA+ +D+ ++LD VWR++  ++   +      +P  P+REL+EL    
Sbjct: 2206 PKALGDVFESVAGAIFLDSNMSLDAVWRVYYRMMKLEIEQFSTNVPKSPIRELLELEPET 2265

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAA 1429
              F K      G  V   + +  K +    +G  R+ + AK  AA
Sbjct: 2266 AKFGKPEKLADGRRVRVSVEVFGKGIF---KGIGRNYRIAKCTAA 2307



 Score = 47.4 bits (111), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 14/156 (8%)

Query: 903  DAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 958
            DA    D V++  +  +     + + EI ++ + +S F G+   + KTF  Y+ +KY I 
Sbjct: 1192 DAAKYHDAVIMPWYRNQDQPQYFYVAEICSHLNPKSTFPGS---EYKTFDEYYFKKYNIQ 1248

Query: 959  LIHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELL 1012
            + +  QPLL +  +    N L     N  G     S + +K        Q  + + PEL 
Sbjct: 1249 IQNEKQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELC 1307

Query: 1013 VRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
                 P S+ +    LP ++ R+ +L+LA Q+R ++
Sbjct: 1308 TVHPFPASLWRKAVCLPCILYRINALLLADQIRCQV 1343


>gi|384494893|gb|EIE85384.1| hypothetical protein RO3G_10094 [Rhizopus delemar RA 99-880]
          Length = 407

 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 178/424 (41%), Gaps = 101/424 (23%)

Query: 1000 KPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPS 1059
            KP+ H   P        +  SV ++  L+P ++ ++++ +L  QL+     H+  F I  
Sbjct: 14   KPEEHRIFP--------ISASVYQASQLIPDILLQIDAFLLIQQLK---TVHNLQF-IDD 61

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
             L+LEA T+         ERLE LGD+VLK+ VS +L+  YP   E +L++ R     N 
Sbjct: 62   ELMLEAFTSPSANRKQDYERLEFLGDAVLKFIVSSYLYAKYPTYSEAELTSLRQVMTSNK 121

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKV 1179
            +   +  D KL  YI   +   R W        RP   +  +D+ ++    K +      
Sbjct: 122  SFANIAKDLKLHRYIISQSTVRRFW--------RPPHFQNVLDSNKI----KHW------ 163

Query: 1180 VVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDC- 1238
                   + H  +   T+AD  E+ +GA ++   +  A+Y    L +     + +  D  
Sbjct: 164  -------LTHHLVSDNTLADIIESTVGAAFLSQSIDGAIYAATQLKLPLG-SIKVWSDLR 215

Query: 1239 -ITRASLRSYVPRIN-EIKDIESKIGYEFTVKFLLQEAITHASVQ--------------- 1281
             I   S  S   +IN ++  +   +GY+F    L+QEA+TH SV                
Sbjct: 216  HIWTPSPASATGQINIDVVRVGEMLGYQFKNYLLVQEALTHGSVMDSLVPCYERLEFLGD 275

Query: 1282 ---EFYCYQNLY----------------------------------KHLQHCSTLLLSQI 1304
               +F+  Q +Y                                  KH+ H S  + + I
Sbjct: 276  AILDFFVTQYIYQKHPTAAPGILHNLRKSSVNHHILSAVCLNMGLDKHIIHVSAEIAASI 335

Query: 1305 --TEYV-KSFPKPGETTDS-GPSMKAPKALGDLLESIVGAVLIDTKLNLDEV----WRIF 1356
               E + K     G+ TD     +  PK L D++ES++GA+L+D+  ++++V     R F
Sbjct: 336  LKAEAIHKDMQSKGKDTDEYWLHLNPPKVLSDVIESLMGAILVDSGFDINQVEEFFERWF 395

Query: 1357 KPIL 1360
            KPIL
Sbjct: 396  KPIL 399


>gi|402217569|gb|EJT97649.1| ribonuclease III [Dacryopinax sp. DJM-731 SS1]
          Length = 1400

 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 122/505 (24%), Positives = 200/505 (39%), Gaps = 137/505 (27%)

Query: 1006 HMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFH--IPSSLIL 1063
            ++ PEL V+  + +S  ++  +LPSVM R+E ++L  +      C+S  FH  +    +L
Sbjct: 807  YLMPELCVKYCLSLSSYRTSMILPSVMARVEEMLLVQE------CNSVVFHDRLDEVFLL 860

Query: 1064 EALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHK 1123
             ALT+      +  +RLELLGDS LKY  S  LF+T P+  EG L   R   + NS L +
Sbjct: 861  PALTSPSAGAGYDYQRLELLGDSFLKYISSIFLFVTCPQDGEGSLHIHRQRIISNSAL-Q 919

Query: 1124 LGTDR--KLQGYIRDSAFDPRRWVAPGQLSLRPV-------------------------- 1155
              +DR  +L  YI+     PR+W  P  L   P                           
Sbjct: 920  FHSDRVGQLPQYIQSRQHSPRQWCPPNFLLYHPCMASALDTSEKFIQGMEERIEASNDGP 979

Query: 1156 -----PCECGV-DTLEVPLDGKFFTQDTKVVVGKPC-----------DMGHRWMGSKTIA 1198
                 P E GV   LE        + D   V   P            +  H+ +G K++A
Sbjct: 980  TAGGSPPESGVTKALESHQANAETSPDNSTVSRSPMPYSARERALMREEQHQELGDKSVA 1039

Query: 1199 DCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRIN------ 1252
            D AEA++GA ++ G    ALY+   LG+      S   D +   +   +   ++      
Sbjct: 1040 DVAEAVLGAAWLTGQREMALYVCHILGLPMTRMGSW--DFLRDHAHIFFHEELDIGPLSQ 1097

Query: 1253 -EIKDIESKIGYEFTVKFLLQEAITHASVQ--EFYCYQN--------------------- 1288
             +++ +E+ +G++F   FL   A+TH+S+   +F CY+                      
Sbjct: 1098 PKVEAVEAILGHKFKNPFLAATALTHSSMSSTDFPCYERLEFIGDAILDFVTVRLLYMRW 1157

Query: 1289 -----------------------------LYKHLQHCSTLLLSQITEYVKSFPK------ 1313
                                         L+ ++ H S  L+  ++ Y K   K      
Sbjct: 1158 GELHEGWLTMLKGAIVSNAALAAFCVDLGLHHYIIHDSPHLVETVSSYAKEITKAKEEDL 1217

Query: 1314 ---------PGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLN---LDEVW-RIFKPIL 1360
                     PGE      +++ PK L D++E+++GA+ +    +    + V+ R+FKP  
Sbjct: 1218 AAAAAEDRAPGEY---WVTLEPPKVLSDIVEALLGAIYVSDSFDPSGYENVFDRLFKPFF 1274

Query: 1361 SPIVTPDKLELPPLRELIELCDSLG 1385
               V+ + L   P   L  L    G
Sbjct: 1275 MKRVSLNTLSQHPTSLLFALLQQRG 1299



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 105/261 (40%), Gaps = 26/261 (9%)

Query: 418 IIFVERIIAAKVVERFVKK-VPFLTHLTVAYLTGSTT-----SVDALTPKVQKEVLESFR 471
           IIFV R   AK +   + +    L ++    L GS+      + D LT   + +    FR
Sbjct: 242 IIFVYRRTTAKALADLLNRNAQVLPNVRARPLIGSSAVLMDPNADHLT---KTQATTQFR 298

Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN-----SQFILML 526
            G +NLL  T  I   + V  CS VI FD     S    + G+ RQ +     S F++++
Sbjct: 299 DGTINLLVTTG-IGVDLSVERCSIVIVFD-----SFSAHAAGQLRQSHLLKITSIFLILI 352

Query: 527 ERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTK-----SYIVESTGASV 581
           E+G  K    L   +   RS   +     P A      T + ++     S +V  TGA V
Sbjct: 353 EKGKQKDIQALSAFL-PRRSKEKSEEESTPPAAEHPRSTGIDSEDEDQASILVPETGARV 411

Query: 582 TTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNK 641
           +   ++ ++ RY  +                     + C +  P +A  + +   +  +K
Sbjct: 412 SALDALQVLTRYVSIKEKSAVSLNVDYHVMGENNRIFRCTIRFPPSAELEDVTSESCPSK 471

Query: 642 NLSKQLVCLEACEKLHQVGAL 662
             +++     ACE+L+  G L
Sbjct: 472 AAARRQAAYMACEELNARGLL 492


>gi|322368028|ref|ZP_08042597.1| Hef nuclease [Haladaptatus paucihalophilus DX253]
 gi|320552044|gb|EFW93689.1| Hef nuclease [Haladaptatus paucihalophilus DX253]
          Length = 806

 Score =  105 bits (263), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 219/506 (43%), Gaps = 56/506 (11%)

Query: 41  SINFIPR-IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFL 99
           S +FI R +YQ+++   A+  +T+  L TG GKT +++++    A+     G K L+  L
Sbjct: 17  SPSFIERRLYQIQLAGTARNDHTLVCLPTGLGKTTVSLLVT---AERFDDVGGKSLL--L 71

Query: 100 APTVHLVHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
           APT  LV+Q  D  R      D ++  + G    DE  S+ W+     + V++ TPQ++ 
Sbjct: 72  APTKPLVNQHADFYREALSIPDEDIVVFTGEVRPDER-SELWKS----SKVIIATPQVVE 126

Query: 157 DALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGV 216
           + +    + L  V  +  DECH ATG++ Y  I  E YH   + P V GM+ASP   K  
Sbjct: 127 NDIVGGRIDLGPVTHVTFDECHRATGDYAYNYIA-ERYHADADDPLVTGMSASPGGDK-- 183

Query: 217 SSAMD-CEG-QISELE--STLDSQVFTIEDKTEME-VFVPSAKESCRFYDQSKFCGSDLK 271
            S ++ CE   + E+E  +  DS V T    TE+E V V    E     D      SD  
Sbjct: 184 ESILEVCENLGLHEVEVMTEEDSDVSTYTHDTEVEWVRVQLPDEIIEIRDALNEVISDRL 243

Query: 272 GKLE----VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLI 327
            +L+    ++ ++ D S   L   +    K +D+      + +S  HA+++         
Sbjct: 244 ERLKDLGVINTTRPDVSQKDLNKVRGQLQKLIDNDQSEGYQGMS-AHAEVM--------- 293

Query: 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLD---FGF 384
                      K+ +A E  E     SL+ +YF  +      S    A +  +       
Sbjct: 294 -----------KLRRAVELAETQSVESLR-RYFERQRNSARSSGASKASQRMVSEPKVQE 341

Query: 385 DYSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL 443
              KAV       K  ++      + G +     I+F E    A+ +  F       + L
Sbjct: 342 AMRKAVQYEGRHPKFQKVRTYVAETLGLNDGERIIVFTESRDTAETLTDFFND-ELGSQL 400

Query: 444 TVAYLT--GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501
           T       G     D +T K Q+E L+ FR G+  +L +T V EEG+ VP    V+ ++ 
Sbjct: 401 TARRFVGQGDKDGSDGMTQKEQQETLDKFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEP 460

Query: 502 PKTVSSYIQSRGR-ARQHNSQFILML 526
             T    IQ +GR  RQ   Q +++L
Sbjct: 461 VPTAVRSIQRKGRTGRQAQGQVVVLL 486


>gi|197246579|gb|AAI68680.1| Ifih1 protein [Rattus norvegicus]
          Length = 775

 Score =  105 bits (263), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 146/576 (25%), Positives = 247/576 (42%), Gaps = 90/576 (15%)

Query: 23  MGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIK 81
           MGS   +  + G   ++       R YQ++V + A   +N I  L TG+GKT +AV + K
Sbjct: 35  MGSDSDEDTIMGTKRASPKPELQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITK 94

Query: 82  DIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CW 138
           D     K       +I L   V L  Q   + R   +  ++++Y   G+   D+Q    +
Sbjct: 95  DHLDKKKQACESGKVIVLVNKVMLAEQ---LFRKEFNPFLKKWYRIIGLS-GDTQLKISF 150

Query: 139 QKEINKNDVLVMTPQILLDAL------RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKE 192
            + +   DV++ T QIL ++L          + L     I+IDECHH      Y  IM+ 
Sbjct: 151 PEVVKSYDVIISTAQILENSLLNLESGEDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRR 210

Query: 193 FYH--------KSDNK-----PKVFGMTASPVVRKGVSSAM---DCEGQISELESTLDSQ 236
           +          K  NK     P++ G+TASP    GV +A    + E  I  + + LD+ 
Sbjct: 211 YLKQKLKNHKLKKQNKPTIHLPQILGLTASP----GVGAAKKQSEAEKHILNICANLDA- 265

Query: 237 VFTIED-KTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGS-QLN 294
            FTI+  K  +       KE C+     KF  +D     +   + F   L ++  S Q  
Sbjct: 266 -FTIKTVKENLSQLKHQIKEPCK-----KFVIAD-----DTRENPFKEKLLEIMASIQTY 314

Query: 295 CYK----DMDDKH------KTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE-KVLKA 343
           C K    D   +H      +  +K   D + +   C + L      EA++I    +++ A
Sbjct: 315 CQKSPLSDFGTQHYEQWAIQMEKKAAKDGNRRDRVCAEHLRKY--NEALQINDTIRMIDA 372

Query: 344 QEECEIYRQSSLQCKYFL----------------EEVLHVIGSALPL--ADKIFLDFGFD 385
               E +     + K+                  +++   +  +L L   D+  ++  FD
Sbjct: 373 YSHLETFYTDEKEKKFAALNDSDESDDDEASSCHDQLKGNVKKSLKLDETDEFLMNLFFD 432

Query: 386 YSK-----AVDLGYISTKLHELLQLFL-SFGKSTQ-VLCIIFVERIIAAKVVERFVKKVP 438
             K     A +  Y + KL +L    L  F +S +    IIF +   +   + +++ +  
Sbjct: 433 NKKMLKKLAENPKYENEKLIKLRNTILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENE 492

Query: 439 FLTHLTVA--YLTGS--TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
               + V   +L G+  ++ V  +T   QKEV+  FR G++NLL AT V EEG+ +  C+
Sbjct: 493 KFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECN 552

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGN 530
            VIR+ L     + +Q+RGRAR   S ++L+   G+
Sbjct: 553 IVIRYGLVTNEIAMVQARGRARADESTYVLVTSSGS 588


>gi|340516882|gb|EGR47129.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1376

 Score =  105 bits (263), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 109/195 (55%), Gaps = 15/195 (7%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ+++ + + ++N I  ++TG+GKT +AV+ IK   +   ++   K+I F+APTV L 
Sbjct: 2   RAYQIEMLDKSLKQNVIVAMDTGSGKTQVAVLRIKKELEICDAS---KIIWFIAPTVSLC 58

Query: 107 HQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           HQQ+DV+++      +    G   +D W    W   ++   +++ TPQ+LLDAL  A+L+
Sbjct: 59  HQQHDVLKLQIPAVPMMTLAGNSNIDAWGPDIWAILLDTVRIVISTPQVLLDALDHAYLN 118

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYH----KSDNKPKVFGMTASPVVRKGVSSAMD 221
           L ++  +V DE H+  G  P  KIM   YH      ++ P V G+TA+P ++  ++    
Sbjct: 119 LGLLALLVFDEVHNCIGRSPGGKIMLHHYHPRKLAGESVPAVLGLTATPSIQSELAD--- 175

Query: 222 CEGQISELESTLDSQ 236
               I  LE  +D++
Sbjct: 176 ----IDALEWLMDAR 186



 Score =  102 bits (255), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 141/297 (47%), Gaps = 37/297 (12%)

Query: 395 ISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTT 453
           IS K+ +L+   LS  + T  + IIFVE R++ A + E         +   +  + G++ 
Sbjct: 354 ISDKVGKLIFELLSVEEPT--VGIIFVEERVMVAMLAEVLSVNHTITSRYRIGTMVGTSN 411

Query: 454 ------SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
                 +V     K   + L+SFR GK+NLL AT V+EEG+ VP C+ VI FD P T  S
Sbjct: 412 YAGRRKAVYDFDQKTDYKDLQSFRSGKINLLIATSVLEEGIDVPACNLVICFDTPTTPKS 471

Query: 508 YIQSRGRARQHNSQFILMLERGN---LK------QRNKLFDIIRSERSVTDTALSRDPEA 558
           +IQ RGRAR  +S  +L  +  N   LK      + N++F+    ER++ +     D E+
Sbjct: 472 FIQRRGRARSKDSNLLLFFDDANPAILKWQAKEEEMNRIFE--DEERAIRELGKLEDSES 529

Query: 559 CFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEML-PSDKYYTPKPIFKYKSAEEA 617
                     T S+ V STGA +  D++   +  +C +L PSD +   +P +  +  +++
Sbjct: 530 P--------STISFTVPSTGARLDFDNAKQHLEHFCRVLCPSD-FVDSRPDYIIRREQDS 580

Query: 618 YECELT------LPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
                       LP N    T   P    KN +K     +A   L+    +N++LLP
Sbjct: 581 PLLTAIVLLPPFLPVNLRQHTSASPWRSEKNATKD-AAYQAYIALYDAKLVNENLLP 636



 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 116/268 (43%), Gaps = 58/268 (21%)

Query: 1027 LLPSVMQRLESLMLASQLR----EEINCHSRNFHIPSSLILEALTTLGCCESFSMERLEL 1082
            L+P+++  L  +++A +L     +E+            L+ EA++     E  + ERLE 
Sbjct: 885  LIPTMIHELGVMLMAKELAYSVLDEVGISDLQ------LVKEAISARSASEPVNYERLEF 938

Query: 1083 LGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR 1142
            LGDS+LK+          P   EG LS  R   V NS L+K   +  L  +I    F  +
Sbjct: 939  LGDSILKFCACMRAAAEKPDYPEGYLSYWRDRLVSNSRLYKAALEFGLPRFILTKPFTGQ 998

Query: 1143 RWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAE 1202
            +W        RP+  +      EV   G   T +             R + +KT+AD  E
Sbjct: 999  KW--------RPLYLD------EVLQQGDVATPE------------KRKLSTKTLADVVE 1032

Query: 1203 ALIGAYYVGGGLIAALYMM-------KWLGIDADLEVSLVDDCITRASLRSYVP----RI 1251
            ALIGA YV GGL  A+  +        W  +DAD           R SL + VP      
Sbjct: 1033 ALIGASYVDGGLSKAVTCISKFVPEGSWTSVDAD-----------RESLFARVPDGEPLP 1081

Query: 1252 NEIKDIESKIGYEFTVKFLLQEAITHAS 1279
              ++ +E  IGY F  K LL EA+THAS
Sbjct: 1082 PPLEPLEKLIGYTFQKKALLMEALTHAS 1109


>gi|74225485|dbj|BAE31652.1| unnamed protein product [Mus musculus]
          Length = 1025

 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 143/547 (26%), Positives = 235/547 (42%), Gaps = 83/547 (15%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ++V + A   +N I  L TG+GKT  AV + KD     K       +I L   V L
Sbjct: 310 RPYQMEVAQPALDGKNIIICLPTGSGKTREAVYITKDHLDKKKQASESGKVIVLVNKVML 369

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ---CWQKEINKNDVLVMTPQILLDAL--- 159
             Q   + R   +  ++++Y   G+   D+Q    + + +   DV++ T QIL ++L   
Sbjct: 370 AEQ---LFRKEFNPYLKKWYRIIGLS-GDTQLKISFPEVVKSYDVIISTAQILENSLLNL 425

Query: 160 ---RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--------KSDNKP-----KV 203
                  + L     I+IDECHH      Y  IM+ +          K  NKP     ++
Sbjct: 426 ESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQI 485

Query: 204 FGMTASPVVRKGVSSAM---DCEGQISELESTLDSQVFTIED-KTEMEVFVPSAKESCRF 259
            G+TASP    GV +A    + E  I  + + LD+  FTI+  K  +       KE C+ 
Sbjct: 486 LGLTASP----GVGAAKKQSEAEKHILNICANLDA--FTIKTVKENLGQLKHQIKEPCK- 538

Query: 260 YDQSKFCGSD------LKGKL------------EVSWSKFDASLSKLQGSQLN--CYKDM 299
               KF  +D       K KL            +   S F     +    Q+     KD 
Sbjct: 539 ----KFVIADDTRENPFKEKLLEIMASIQTYCQKSPMSDFGTQHYEQWAIQMEKKAAKDG 594

Query: 300 DDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL----EKVLKAQEECEIYRQSSL 355
           + K +   + L  Y+ + L   D + +I AY  ++       EK      + +     + 
Sbjct: 595 NRKDRVCAEHLRKYN-EALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSDKSDDEAS 653

Query: 356 QCKYFLEEVLHVIGSALPL--ADKIFLDFGFDYSK-----AVDLGYISTKLHELLQLFL- 407
            C    +++   +  +L L   D+  ++  FD  K     A +  Y + KL +L    L 
Sbjct: 654 SCN---DQLKGDVKKSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILE 710

Query: 408 SFGKSTQV-LCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YLTGS--TTSVDALTPKV 462
            F +S +    IIF +   +   + +++ +      + V   +L G+  ++ V  +T   
Sbjct: 711 QFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTE 770

Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
           QKEV+  FR G++NLL AT V EEG+ +  C+ VIR+ L     + +Q+RGRAR   S +
Sbjct: 771 QKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTY 830

Query: 523 ILMLERG 529
           +L+   G
Sbjct: 831 VLVTSSG 837


>gi|212224218|ref|YP_002307454.1| Hef nuclease [Thermococcus onnurineus NA1]
 gi|212009175|gb|ACJ16557.1| helicase-associated endonuclease for fork-structured DNA
           [Thermococcus onnurineus NA1]
          Length = 789

 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 143/531 (26%), Positives = 232/531 (43%), Gaps = 56/531 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR+YQ  ++   K  N + VL TG GKT+IA MLI D    ++  G K  ++ LAPT  L
Sbjct: 10  PRVYQEVIYARCKESNCLVVLPTGLGKTLIA-MLIADYR--LQKYGGK--VLMLAPTKPL 64

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
             Q  +  +   D   E+     G  E   +  Q+   K+ ++  TPQ + + +    +S
Sbjct: 65  ALQHAESFKKLFDIPPEKINVLTG--ELSPKTRQEIWEKSVIITATPQTIENDILTGRIS 122

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP----VVRKGVSSAMD 221
           L+ V  +V DE H A GN+ Y  I +E Y K+   P V G+TASP    V  + + + + 
Sbjct: 123 LEDVVLLVFDEAHRAVGNYSYVFIARE-YLKTAKHPLVLGLTASPGSDEVRIREIINNLG 181

Query: 222 CEGQISELESTLDSQVFTIEDKTE-MEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280
            E      ES+ D + +      E ++V +P   +  R         S L+G L+     
Sbjct: 182 IERIEIRTESSPDVKPYVHRIAFEWVKVDLPGVYKEVR---------SLLRGMLK----- 227

Query: 281 FDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV 340
              SL  L   +L      D   K + +  S  + ++     E+G +  Y+A      K 
Sbjct: 228 --ESLKPLAQFKLVSSYSPDISKKEVLQAGSKINQEVARGNYEIGRLRMYQA------KA 279

Query: 341 LKAQEECEIYRQSSLQC--KYF--LEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS 396
           +K Q   E+     L     Y   L E      S   + D       +   +A +LG   
Sbjct: 280 VKLQHAIELLETQGLTALRAYLKKLREDKRTKSSRELMEDPRMRKVIYLLVQAKELGIDH 339

Query: 397 TKLHELLQLFLS-FGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVA---YLTGS 451
            K+ +L +L  +   K      I+F   R    K+VE        L  ++V+   ++  +
Sbjct: 340 PKMEKLKELVKAQLEKKPNSKIIVFTNYRDTGKKIVEE-------LRAMSVSAERFIGQA 392

Query: 452 TTSVD-ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD-LPKTVSSYI 509
           + S D  ++ K QKE LE F  G+ ++L AT V EEG+ VP    VI ++ +P  + S I
Sbjct: 393 SRSNDRGMSQKQQKETLERFSRGEFSVLVATSVGEEGLDVPEVDLVIFYEPVPSAIRS-I 451

Query: 510 QSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDT--ALSRDPEA 558
           Q RGR  +H    +++L     +     +   R ER + +    ++R+ EA
Sbjct: 452 QRRGRTGRHRPGRVVILMAKGTRDEAYYWSSRRKERGMFEAIRKIARELEA 502


>gi|57640956|ref|YP_183434.1| Hef nuclease [Thermococcus kodakarensis KOD1]
 gi|57159280|dbj|BAD85210.1| helicase-associated endonuclease for fork-structured DNA
           [Thermococcus kodakarensis KOD1]
          Length = 804

 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 133/499 (26%), Positives = 216/499 (43%), Gaps = 49/499 (9%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR+YQ  ++   K  N + VL TG GKT+IA MLI D     + + +   ++ LAPT  L
Sbjct: 11  PRVYQEVIYARCKEANCLVVLPTGLGKTLIA-MLIADY----RLSKYGGKVLMLAPTKPL 65

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKG--VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
             Q  +  +   +   E+     G    +  ++ W+  +    V+  TPQ + + +    
Sbjct: 66  AVQHAESFKKLFNIPPEKINVLTGELSPKQRAEVWKNSV----VITATPQTVENDILTGR 121

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
           +SL+ V  +V DE H A GN+ Y  I KE Y K+   P V G+TASP            E
Sbjct: 122 ISLEDVVLLVFDEAHRAVGNYSYVFIAKE-YLKTAKHPLVLGLTASP---------GSDE 171

Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE----VSWS 279
            +I E+   L   +  IE +TE    V    +   F    ++   DL G  +    +   
Sbjct: 172 EKIREIVRNLG--IERIEIRTESSPDVKPYVQKIAF----EWVKVDLPGIYKEVRSILRE 225

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339
               SL  L   +L      D   K + +  S  + ++     ELG +  ++A  +   K
Sbjct: 226 MLKESLKPLAQFKLVSTYSPDISKKEVLQAGSKINQEVARGNYELGRLRMHQAKAV---K 282

Query: 340 VLKAQEECEIYRQSSLQCKYF--LEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397
           +L A E  E    ++L+  Y   L+E      S   + D       +   +A + G    
Sbjct: 283 LLHALELLETQGLTALRA-YLKKLKEDKRTKSSKELMEDPRMRKVIYLLVQAKESGLDHP 341

Query: 398 KLHELLQLFL-SFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
           K+ +L +L     GK      I+F   R    K+VE           +T     G  +  
Sbjct: 342 KMEKLKELVKEQLGKKPSSKIIVFTNYRDTGKKIVEELRS-----MGITAERFIGQASRK 396

Query: 456 D--ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD-LPKTVSSYIQSR 512
           D   ++ + QKEVL+ F  G+ N+L AT V EEG+ VP    V+ ++ +P  + S IQ R
Sbjct: 397 DDRGMSQREQKEVLDRFSRGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRS-IQRR 455

Query: 513 GRARQHN-SQFILMLERGN 530
           GR  +H   + ++++ +G 
Sbjct: 456 GRTGRHRPGRVVILMAKGT 474


>gi|429860114|gb|ELA34863.1| helicase c-terminal domain-containing protein [Colletotrichum
           gloeosporioides Nara gc5]
          Length = 1046

 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 134/556 (24%), Positives = 231/556 (41%), Gaps = 61/556 (10%)

Query: 3   SPLNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSST--NSINF-IPRIYQLKVFEVAKR 59
           SP+ + +  FG V+  + P      H HA+D  +  T     N    R YQ  + +    
Sbjct: 144 SPIQAAQPGFGRVYRGDKP-QEPPAH-HALDREAMKTWLYPTNLGATRDYQFSIVKNGLF 201

Query: 60  RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD-------V 112
            NT+  L TG GKT IA  ++ +  +  K       I+F+APT  LV QQ D       +
Sbjct: 202 NNTLVALPTGLGKTFIAATVMLNYFRWTKD----VKIVFVAPTKPLVAQQVDACFNIAGI 257

Query: 113 IRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFI 172
            R  T     +   A  VDEW S+          V  MTPQ L++ L   +     +  +
Sbjct: 258 ARSETTLLTGDTAPALRVDEWQSKR---------VFFMTPQTLVNDLSHGYADPKSIVLL 308

Query: 173 VIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR-KGVSSAMDCEGQISEL-- 229
           VIDE H ATG + Y K++K    + +   +V  +TA+P  + + V   +D  G IS +  
Sbjct: 309 VIDEAHRATGEYAYAKVVK-LMRRFNPYFRVLALTATPGSKVETVQEIIDNLG-ISHIEI 366

Query: 230 --ESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL---EVSWSKFDAS 284
             E ++D + +  +   E  +  PS  E C   D        L  KL    + + +   S
Sbjct: 367 RTEESIDIRQYVHQRNVEQVLLDPS-DEMCEIKDLFTKALKPLMDKLTQQNIYYGRDPMS 425

Query: 285 LSK--LQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLK 342
           ++   L   Q + + ++  +     + +      IL  L     +  +  V+   E + +
Sbjct: 426 ITAYGLMQQQKDWFANVGRRANPGLQGMMRSVFSILQSLAHTIKLLNFHGVRPFYENLNE 485

Query: 343 AQEECE-------IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF-DYSKAVDLGY 394
            + E E        Y++  L+ ++F E + ++        +K     GF  + K  +L  
Sbjct: 486 FRSEVEEKGAKGSKYKKQILESEHFQEMMSNM--------EKWLRIDGFASHPKLTEL-- 535

Query: 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS 454
                  +L  F+  G ++    I+F E   +A+ + + + +   L   TV      +  
Sbjct: 536 ----QDRILNHFMDNGGNSATRVIVFSEYRDSAEDIVQVLNRHKPLIKATVFVGQADSKR 591

Query: 455 VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
              +    Q E +E F+ GK N+L AT + EEG+ +     ++ +D   +    +Q  GR
Sbjct: 592 SAGMKQAEQIETIEKFKDGKYNVLVATSIGEEGLDIGQVDLIVCYDASSSPIRMLQRMGR 651

Query: 515 -ARQHNSQFILMLERG 529
             R+     IL+L RG
Sbjct: 652 TGRKRAGNIILLLMRG 667


>gi|223477217|ref|YP_002581470.1| ATP-dependent RNA helicase [Thermococcus sp. AM4]
 gi|214032443|gb|EEB73273.1| ATP-dependent RNA helicase [Thermococcus sp. AM4]
          Length = 807

 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 142/521 (27%), Positives = 226/521 (43%), Gaps = 94/521 (18%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR+YQ  ++   K RN + VL TG GKT+IA MLI D     + + +   ++FLAPT  L
Sbjct: 25  PRVYQEVIYARCKERNCLVVLPTGLGKTLIA-MLIADY----RLSKYGGKVLFLAPTKPL 79

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWD--SQCWQKEINKNDVLVMTPQILLDALRKAF 163
             Q  +  R   +   E+     G    D  ++ W+K +    V+  TPQ + + L    
Sbjct: 80  AMQHAESFRKLFNLPPEKINVLTGELSPDKRAELWRKSV----VITATPQTIENDLLTGR 135

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
           +SL+ V  +V+DE H A GN+ Y  I KE Y K+   P V G+T         +S    E
Sbjct: 136 ISLEDVVLLVVDEAHRAVGNYAYVFIAKE-YLKTAKHPLVLGLT---------ASPGSDE 185

Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF-----------YDQSKFCGSDLKG 272
            +I E+   L   +  IE +TE    V    +   F            D  K     LK 
Sbjct: 186 EKIREIVGNLG--IERIEIRTENSPDVKPYVQRIAFDWVKVELPGIYKDVRKILREMLKD 243

Query: 273 KLE-------VSWSKFDASLSKL--QGSQLNCYKDMDD-------KHKTLRKQLSDYHAK 316
            L+       VS S  D S  ++   GS++N      D       KH+   K +  +HA 
Sbjct: 244 SLKPLADAGLVSSSSPDISKREVLQAGSKINQAMAKGDYSIGYLKKHQA--KAMKLHHA- 300

Query: 317 ILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLAD 376
            +  L+  GL      +K   E   K+  E        L     + +V +++  A  L  
Sbjct: 301 -IELLETQGLTALRSYLKKLREDRSKSGRE--------LMEDPRMRKVTYLLVQAKEL-- 349

Query: 377 KIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVK 435
                 G D+ K         KL EL++  L     +++  I+F   R    K+VE    
Sbjct: 350 ------GLDHPKM-------EKLKELIRKQLQKKPDSKI--IVFTNYRDTGKKIVEE--- 391

Query: 436 KVPFLTHLTVA---YLTGSTTSVD-ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
               L  + ++   ++  ++   D  ++ + QKEVL+ F  G+ N+L AT V EEG+ VP
Sbjct: 392 ----LQEMGISAERFIGQASRGRDRGMSQREQKEVLDRFSRGEFNVLVATSVGEEGLDVP 447

Query: 492 NCSYVIRFD-LPKTVSSYIQSRGRARQHN-SQFILMLERGN 530
               V+ ++ +P  + S IQ RGR  +H   + ++++ +G 
Sbjct: 448 EVDLVVFYEPVPSAIRS-IQRRGRTGRHRPGKVVILMAKGT 487


>gi|198421916|ref|XP_002122382.1| PREDICTED: similar to rCG20888 [Ciona intestinalis]
          Length = 2053

 Score =  105 bits (261), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 158/321 (49%), Gaps = 49/321 (15%)

Query: 415 VLC-IIFVERIIAAKVVERFVKKVP----FLTHLTVAYLT----GSTTSVD--ALTPKVQ 463
            LC I+FVE    A +++R ++++      L H++ ++LT    G    VD  ++    Q
Sbjct: 523 TLCGIVFVEERYVAMMLQRLLRELSKEDKNLKHVSSSHLTPGVEGERRGVDPASMDQSKQ 582

Query: 464 KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
           +EVL  FR  + NLL  T  +E+  ++P C+ ++RFD+PK+  SY +S+ RAR   S ++
Sbjct: 583 EEVLRKFRSHESNLLICTGDLEDCAYMPKCNLIMRFDVPKSYRSYAESKSRARAQTSAYV 642

Query: 524 LML---ERGNLKQRNKLFDIIR--------SERSVTDTALSRDPEACFLKACTYVKTKSY 572
           +++   E+ +  ++ + +  I         S   V D     D E              Y
Sbjct: 643 MLVRETEKSHFMEKLQEYKKIEKVLLGPDWSLNEVYDNNEDDDIEEMI---------PPY 693

Query: 573 IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKY-----KSAEEAYECELTLPSN 627
           I+ +    V   ++V +++RYC  LPSD +    P  +            + C L LP N
Sbjct: 694 IL-NRNTQVNMKNAVRIVNRYCNRLPSDPFTHLSPRCEVVEVLNDGDSPMFMCILQLPIN 752

Query: 628 A----PFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLI 679
           +    P Q IV PT +   L++Q V +E C+ L++ G L+++L+P    +V+   E +  
Sbjct: 753 SHVREPVQGIVMPTLQ---LAQQAVAMETCKVLYEAGELDENLMPIGKETVKYAEELDPW 809

Query: 680 SKKNESLPG-AGTTKRKELHG 699
            ++  S+ G  G+TK+++ + 
Sbjct: 810 KREVSSITGRPGSTKKRQTYN 830



 Score = 81.3 bits (199), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 1/89 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+AV+ +L+ TYP+ HEG+LS  RS  V N  
Sbjct: 1460 LILQALTLSNASDGFNLERLEMLGDSFLKHAVTVYLYCTYPESHEGKLSYMRSKKVSNYN 1519

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            L+++G    L G +    FDP   W+  G
Sbjct: 1520 LYRIGKQFGLAGKMTGLIFDPTVNWLPTG 1548



 Score = 73.6 bits (179), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 7/192 (3%)

Query: 23  MGSSGHDHAVDGPSSSTNSI--NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLI 80
           M SSG       PS ++NS   +FIPR YQ+++ E A ++NTI  L    GK  +  M +
Sbjct: 1   MLSSGSSQEPGKPSWTSNSQCNSFIPRPYQIELLECAAKQNTIICLNGDFGKCFMYTMFL 60

Query: 81  KD--IAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138
           ++  I    K N   K  + L     +V++Q +++R H D ++         D +  +  
Sbjct: 61  REVIIKHNGKLNNAPKFAVLLLKEDCMVNEQSELLRSHLDVDIIS-CTHNMTDSFTDESL 119

Query: 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEFYHKS 197
           Q+  + + VLV TP++ +  L  +      +  ++ D+CH      HP  KIMK    ++
Sbjct: 120 QQLCHDHQVLVCTPEVFVKLLSISLYIAQYMDLVIFDDCHLVNIEMHPIRKIMK-ILDEN 178

Query: 198 DNKPKVFGMTAS 209
              P + G+T+S
Sbjct: 179 RYTPMILGLTSS 190



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 14/117 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKALGD+ ES+ GA+ +D+ ++L  VW+++  ++ P++      +P  P+REL+E+    
Sbjct: 1940 PKALGDIFESVAGAIYMDSGMDLSSVWKVYSVMMLPLIEKFSACVPRSPVRELLEMEPET 1999

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLE 1437
              F   +C  K      ++R+ ++   ++G+G+     RS + AK  AA + L+ L+
Sbjct: 2000 AKF---SCAEK--RYDGKVRVTVE---IIGKGRFKGVGRSYRIAKSAAARRALRYLK 2048



 Score = 45.1 bits (105), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 25/121 (20%)

Query: 1192 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRI 1251
            +  K+IADC EAL+GAY    G  +A  ++  LG++   +V+  +   T        P  
Sbjct: 1707 LADKSIADCVEALLGAYLTTCGHRSAQLLLCHLGLNVLPKVAQAETSKTVDRFGYLTPPT 1766

Query: 1252 NEIKD------------------IESKIGYEFTVKFLLQEAITHASVQEFY-----CYQN 1288
            N++ +                   E KI Y F  K  L +A THAS   +Y     CYQ 
Sbjct: 1767 NKMLECRPNQQNKLDQLLVALSGFERKINYTFKNKAYLLQAFTHASY--YYNTVTDCYQR 1824

Query: 1289 L 1289
            L
Sbjct: 1825 L 1825



 Score = 42.0 bits (97), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 934  SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS-GK 990
            +P       + ++F++Y+  KYG+ +    QPLL +  + +  NLL   + N  G +   
Sbjct: 1049 TPLSSFPSSEYESFLHYYQLKYGLDIRCLKQPLLDVDHTSSRLNLLTPRHLNQKGKALPM 1108

Query: 991  GSKSGMNTKKPQMHVH--MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
             S      K   +H    + PEL     +P S+ +    LPSV+ R+  L++A +LR+ I
Sbjct: 1109 SSLEKKRAKYESLHNRQILVPELCEVHPIPASLWRKAVCLPSVLYRVNQLLIAEELRKNI 1168


>gi|296923416|emb|CAZ27720.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Oncorhynchus mykiss]
          Length = 623

 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 136/540 (25%), Positives = 225/540 (41%), Gaps = 99/540 (18%)

Query: 49  YQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
           YQ +V + A R  N I  L TG GKT  AV + K   + +++N   K+ + L   VHLV 
Sbjct: 8   YQEEVVQRALRGENIIIWLPTGGGKTRAAVYVAK---KHLENNPGAKVAV-LVNKVHLVD 63

Query: 108 QQYDVIRVHTDFEVEEYYGAK-GVDEWDSQCWQK-----EINKNDVLVMTPQILLDALRK 161
           Q Y+        E   Y G+   +      C QK     E+  +D+++ T QIL +AL  
Sbjct: 64  QHYNN-------EFNPYLGSDYSLVSISGDCDQKDFFGCEVKNSDLVICTAQILENALTN 116

Query: 162 A----FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH---KSDNK-PKVFGMTASPVVR 213
                 + L     ++IDECHH      Y KIM  +     K + + P++ G+TASP   
Sbjct: 117 QEEGKHVELSQFTLLIIDECHHTHKEGVYNKIMARYVAQKLKGERRLPQILGLTASP--- 173

Query: 214 KGVSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDL 270
            G   A   +G +    ++ + LDS + +                       SK    +L
Sbjct: 174 -GTGGAKSIKGAVEHVLQICANLDSVIVS-----------------------SKVYAPEL 209

Query: 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHA-KILYCLDELGLICA 329
           K K+     +FD    + Q           D  K + + + D+ A    + + E G    
Sbjct: 210 KKKVPRPRKRFDIVDRRPQDP-------FGDHLKFMMQFIHDFMALGPEFPVREFG-TQE 261

Query: 330 YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL-----------------HVIGSAL 372
           YEA  + LEK     +   +  Q +L  + + + +L                 +   S+ 
Sbjct: 262 YEADVVILEKK-GVTDRNRLLAQCALHLRQYNDALLINDTVRMVDAFRVLESYYSTKSST 320

Query: 373 PLADKIFLDFGFDYSKAVDLGYIST----------KLHE-LLQLFLSFGKSTQVLCIIFV 421
            +    F   G      V+L  +S           KL   LL+ F+  G S  +L   F 
Sbjct: 321 AMDGTDFFLLGLYQENEVELRKLSGDARFENPKMGKLQNTLLEQFVQGGHSRGIL---FS 377

Query: 422 ERIIAAKVVERFVKKVPFLTH--LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLF 479
           +   +   +  +V   P L    +  A LTG+   ++ +T   QK+ + +FR G +NLL 
Sbjct: 378 KTRKSICCLYDWVSNNPALQRAGIRAAILTGAGNGINYMTQNEQKDTIRNFRLGSLNLLI 437

Query: 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           +T V EEG+ +P C+ V+R+ L     +  Q+ GRAR  +S + ++ + G  + R +L +
Sbjct: 438 STSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARASDSVYSVVAQAGGREARRELLN 497


>gi|341898470|gb|EGT54405.1| hypothetical protein CAEBREN_20187 [Caenorhabditis brenneri]
          Length = 1148

 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 132/541 (24%), Positives = 247/541 (45%), Gaps = 79/541 (14%)

Query: 40  NSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIF 98
           +  N + R+YQ ++ + A + +N + V  TG GKT +A+    +  +  ++ G    +  
Sbjct: 360 DETNLVLRVYQEELVQPALEGKNCVIVGPTGCGKTEVAIYAALNHLRERQAAGQTGRVAM 419

Query: 99  LAPTVHLVHQQYDVIRVHT--DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
           L P + LV QQ +    +    F V  ++G++  D  + +  + ++ ++ ++VMTPQIL+
Sbjct: 420 LVPKIPLVTQQKERFLQYCRGSFTVNGFFGSEKSDSGEGR--KDDVIESHIVVMTPQILI 477

Query: 157 DALRKAFLS--LDIVCF--IVIDECHHATGNHPY---TKIMKEFYHKSDNKPKVFGMTA- 208
           + L+   ++  L +  F  ++ DE H ATGNHPY    +I++E+ H   +KP++ G+TA 
Sbjct: 478 NMLQSVRVNERLYVADFSMMIFDEVHKATGNHPYVIINQIVQEWEH---DKPQIIGLTAS 534

Query: 209 ---SPVVRKGVS------------------SAMDCEGQISELESTLDSQVFTIEDKTEME 247
              S   +K +S                  S +  +  I EL    +  V   +D   +E
Sbjct: 535 LNVSSTAQKDLSQMLFSIHTMLALLNAPYLSTIKLQASIDEL----NKHVSKPDDS--VE 588

Query: 248 VFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCY-KDMDDKHKTL 306
           V  P+A  + R Y ++    + +K   E+       SLSKL+    NC+  +   + K L
Sbjct: 589 VCQPTAT-ALRNYIETYLGTAHIKLCHELE------SLSKLRH---NCFPSNSYRRFKKL 638

Query: 307 RKQLSDYHAKILYCLDE--LGLICAYEAVKICLEKVLKAQEECE--IYRQSSLQCKYFLE 362
             +  + +   L  +++    L  A + + +   K ++   E    +    +     F+E
Sbjct: 639 SPKFYEIYESNLQNINQDLKKLNTAEKTIAVTWMKYIRLYVEARGMVDLMPARLVFEFME 698

Query: 363 EVLHVIGSALPLADKIFLDF-----GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLC 417
             +  + +   L D+ F DF     G + +   D   I TKL + L     F  +     
Sbjct: 699 ARIRELDTGHKLGDQ-FSDFFKKYSGLEANAKSDEPMIVTKLKDTL--ITQFKVTPDSRV 755

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHL----------TVAYLTGSTTSVDALTPKVQK--E 465
           IIFV +   A+ +  F+ K   +              V ++ G+     A+    Q+  +
Sbjct: 756 IIFVTQRATAQRISDFLNKSHIMDQFRDPDDDGYDEMVGFVLGTNNQGGAVQQSQQEQQK 815

Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK-TVSSYIQSRGRARQHNSQFIL 524
           VL  F  GK+ ++ AT V+EEG+ V +C+ +I+++    +    +Q RGRAR  NS+ +L
Sbjct: 816 VLSRFNNGKMKVIVATSVVEEGLDVTSCNLIIKYNCSSGSAIQLVQRRGRARAKNSRSVL 875

Query: 525 M 525
           +
Sbjct: 876 L 876


>gi|195996297|ref|XP_002108017.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens]
 gi|190588793|gb|EDV28815.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens]
          Length = 707

 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 161/370 (43%), Gaps = 41/370 (11%)

Query: 926  IVNNSSAESPFDGNTDDD-SKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFND 984
            + N  S  SP    T+ D + T+  Y+  KY I +    QPLL + +    H  L+N   
Sbjct: 121  VSNVCSDMSPSSKFTNPDVASTYSEYYKIKYDIDIQDANQPLLEVARFKKMHITLLNAKQ 180

Query: 985  GGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQL 1044
             G      ++ ++       + + PEL +   +P  +      L  V+ R+ES++LA +L
Sbjct: 181  SGSITHDIRT-LSVNSNSNSIVLIPELCLIHVIPAELWFLSQYLALVLYRVESILLAFEL 239

Query: 1045 REEI-------NCHSRNFHIPS-----SLILEALTTLGCCESFSMERLELLGDSVLKYAV 1092
            RE +       + +S ++ I +       +LEA+T     + F++ERLE LGD  L Y +
Sbjct: 240  RELLRSQANICDIYSVDYLITAVGSAKPCLLEAITLSSAQDHFNLERLEFLGDRYLNYKI 299

Query: 1093 SCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRR-WVAPGQLS 1151
            +    L +P     ++  R  +   N  L +LG  R++  YI    F+  + WV PG + 
Sbjct: 300  TLTTLLEHPSWSINEVINRMRFLTKNKKLFRLGAGRRIPYYIVGCPFNQNKSWVPPGFVI 359

Query: 1152 LRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVG 1211
             + V                     +++ +    +  H+ +  K IADC E LIG   + 
Sbjct: 360  NQTV---------------------SELSIAMSREYTHQPLTKKAIADCVEGLIGYLCLV 398

Query: 1212 GGLIAALYMMKWLGIDADLEVSLVDDCITRASLRS--YVPRINEIKDIESKIGYEFTVKF 1269
             G  + L  M+WLG +    +  + + I     R+  Y    N ++ I   + Y F  + 
Sbjct: 399  CGRNSVLRFMRWLGFEISECLDGIQELIPSIDFRTNLYSETANSVETI---LNYSFRNRS 455

Query: 1270 LLQEAITHAS 1279
            LL  A+TH S
Sbjct: 456  LLMLALTHKS 465


>gi|298294499|gb|ADI75503.1| DExD/H box RNA helicase [Paralichthys olivaceus]
 gi|304272543|gb|ADM18136.1| LGP2 [Paralichthys olivaceus]
          Length = 682

 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 156/610 (25%), Positives = 250/610 (40%), Gaps = 120/610 (19%)

Query: 49  YQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
           YQ +V E A K  N I  L TG GKT  AV + K   + +++    K+++ L   VHLV 
Sbjct: 9   YQQEVVERAIKGENVIIWLPTGGGKTRAAVYVAK---RHLETTQHAKVVV-LVNKVHLVD 64

Query: 108 QQYD------------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL 155
           Q Y             ++ V  + E+++ +G             K +  +DV++ T QIL
Sbjct: 65  QHYTKEFKPHLGSNYTLVPVSGESELKDLFG-------------KVVQDSDVVICTAQIL 111

Query: 156 LDALRKA----FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK----SDNKPKVFGMT 207
            +AL  +     + L  +  ++ DECHH      Y +IMK +  K        P++ G+T
Sbjct: 112 YNALTNSEETKHVELSDITLLIFDECHHTHKGGVYNQIMKCYVEKKLKGERRLPQILGLT 171

Query: 208 ASPVVRKGVSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSK 264
           ASP    G   A   E  +    ++ + LDS +                  S R Y    
Sbjct: 172 ASP----GTGGARILEKAVEHVLQICANLDSSIV-----------------STRLY---- 206

Query: 265 FCGSDLKGKLEVSWSKFDASLSKLQ---GSQLNCYKDMDDKHKTLRKQLSDYHAKILYCL 321
               +LK K+      FD   ++ +   G+ L     M   +  L    SD+       L
Sbjct: 207 --APELKKKVPRPIKTFDIVENRPEDPFGNHLKRMMQMIQDYMNL--PTSDFR------L 256

Query: 322 DELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADK---- 377
            E G    YEA  + LE+    +E+     Q +L  + + + +L  I   L + D     
Sbjct: 257 RECG-TQEYEADVVILEQ-RGIREDNRRLAQCALHLRQYNDALL--INDTLLMMDAYRNL 312

Query: 378 ---------------------IFLDFGFDYSK-AVDLGYISTKLHELLQLFL-SFGKSTQ 414
                                IF D   D  K A D  Y + K+ +L  + L  F    Q
Sbjct: 313 EEFYISKSTRAIDKTDFFLVGIFQDNQADLMKVARDSRYENPKMAKLESVLLKQFSSGLQ 372

Query: 415 VLCIIFVERIIAAKVVERFVKKVPFLTHLTV--AYLTGSTTSVDALTPKVQKEVLESFRG 472
              I+F +   +   +  +V     L    V  A LTG+   +  +T   Q + +  FR 
Sbjct: 373 SKGILFSKTRKSIHCLNEWVLNNRALQEAGVKSAILTGAGNGITYMTQHEQADTICRFRQ 432

Query: 473 GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK 532
           G +NLL +T V EEG+ +P C+ V+R+ L     +  Q+ GRAR  +SQ+ ++  +G  +
Sbjct: 433 GTLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARAQDSQYSVVALKGGRE 492

Query: 533 QRNKLFDIIRSERSVTDTALSRDPEAC-FLKACTYVKT----KSYIVES---TGASVTTD 584
           +R ++ +    E +    A  +D     F +  T ++T    KS I ES      S  T 
Sbjct: 493 ERREITNEYLEELTAKAIAQVQDMSIREFQRKITELQTQAVIKSRIEESCKMQKRSRYTA 552

Query: 585 SSVNLIHRYC 594
           SS+ L+ R C
Sbjct: 553 SSIQLLCRNC 562


>gi|301619410|ref|XP_002939087.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like [Xenopus
           (Silurana) tropicalis]
          Length = 624

 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 130/526 (24%), Positives = 228/526 (43%), Gaps = 73/526 (13%)

Query: 49  YQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
           YQ +V   A + +N I  L TGAGKT  A+ +     + +K N     + F+   VHLV 
Sbjct: 6   YQWEVIAPALEGKNIIIWLPTGAGKTRAALYVAMRHLE-MKRNA---KVAFIVNKVHLVD 61

Query: 108 Q------------QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL 155
           Q            +Y V+ +  D E + ++  K  D             NDV++ T QIL
Sbjct: 62  QHFSNEFQPHLKDKYTVVAISGDTEHKCFFAQKTQD-------------NDVIICTAQIL 108

Query: 156 LDAL----RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMT 207
            +AL     +  + L     ++IDECHH   +  Y K+M+ +  +   +    P++ G+T
Sbjct: 109 QNALSSGSEEMHVELTDFTLLIIDECHHTHKDGVYNKLMEGYLERKICRKGKLPQILGLT 168

Query: 208 ASPVVRKGVSSAMDCEGQISELESTLDS-QVFTIEDKTEMEVFVPSAKESCRFYDQSKFC 266
           ASP   +  S     E  I ++ + LD+ ++ + E     E     AK+  + YD     
Sbjct: 169 ASPGTGRATSFHKAVE-HILQICANLDTWRIMSAE--VHREDLEAKAKQPNKQYDLVAQR 225

Query: 267 GSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGL 326
             D           F   L +L  +     +  +        Q+  Y  K++  L++ G 
Sbjct: 226 TRD----------PFGDKLKELMKTIHGYLRTAEFSESEFGTQV--YEQKVVE-LEKEGA 272

Query: 327 ICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADK---IFLDFG 383
           + A    + C   + K  +   ++    +   Y L    +V    +   +     FL   
Sbjct: 273 VEADRMKRTCALHLRKYNDSLLVHDTVRMTDAYELLAEFYVTEKFIRKQNDPTDTFLIQL 332

Query: 384 FDYSKA--VDLGYIS-------TKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434
           FD ++A  ++L + S       TKL E+L+    F   ++   IIF     +   +  ++
Sbjct: 333 FDRNQATLLELAHDSRFENPKLTKLEEILKDQFQFSSVSR--GIIFTRTRQSTHSLHNWI 390

Query: 435 KKVPFLTHLTV--AYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
               +   + +  A LTG+  S  +  +T   Q+EV+E FR G++NLL +T V EEG+ +
Sbjct: 391 SGKDYFQKMGIKTAPLTGAGYSNQSKHMTQNEQREVIEKFRKGELNLLVSTSVAEEGLDI 450

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           P C+ V+R+ L     + +Q+RGRAR  +S +  + + G  + R +
Sbjct: 451 PQCNVVVRYGLMTNEIAMVQARGRARHEDSCYSFLAKSGGKEIRRE 496


>gi|325093360|gb|EGC46670.1| dicer-like protein [Ajellomyces capsulatus H88]
          Length = 1436

 Score =  104 bits (259), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 131/264 (49%), Gaps = 14/264 (5%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVA--------YLTGSTTSVDALTPKVQKEVLES 469
           IIF ++     ++   + + P L H+ ++        Y   ++T ++    K QK  ++ 
Sbjct: 369 IIFAQQRSTVTMLAHLISRHPRLKHMFLSGAFLGDSGYAGRTSTIIELHDLKTQKGSIDD 428

Query: 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG 529
            R GK NLL AT V+EEG+ V  C  VI FD    + S+IQ RGRAR+  S+F++ L   
Sbjct: 429 LRSGKKNLLIATSVLEEGIDVSACHLVICFDTINNLRSFIQRRGRARKERSKFVMFLNGD 488

Query: 530 NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNL 589
           +  Q  K   +    +S+ +  + R  +    +       + + +ESTGA +T +++   
Sbjct: 489 DNSQGKKWTKMEDVMKSMYEEDMRRLEDVWAKENVEEESDEDHRIESTGALLTFENARPH 548

Query: 590 IHRYCEMLPSDKYYTPKPIFKYKSAE--EAYECELTLPS--NAPFQTIVGPT-SRNKNLS 644
           +  +C  L  + +   +P+F ++  E       ++ LP+  +  F+ I G    R + L+
Sbjct: 549 LEHFCATLQCE-FTDTRPVFMFRENELDGMVTAKVLLPNVLDPKFRVIKGSKWWRTEQLA 607

Query: 645 KQLVCLEACEKLHQVGALNDHLLP 668
           ++    +A  KL+Q G +NDHLLP
Sbjct: 608 QRDAAFQAYLKLYQEGLVNDHLLP 631



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 5/133 (3%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQL++ E + R N I  ++TG+GKT +A++ I+     +++    K + FL PTV L
Sbjct: 47  PRAYQLEMLEASLRENIIIAMDTGSGKTQVAILRIR---HELETCAAHKFVWFLTPTVAL 103

Query: 106 VHQQYDVIRVH-TDFEVEEYYGAKGVDEWDS-QCWQKEINKNDVLVMTPQILLDALRKAF 163
             QQ+  I    + +E     G+  V+ W + + W   +    ++V TPQ+LLDA+   F
Sbjct: 104 AEQQHKSISQQLSAYETRLLLGSDNVNYWSTKKIWDDILLNIRIVVSTPQVLLDAMTHGF 163

Query: 164 LSLDIVCFIVIDE 176
           +++  +  +V DE
Sbjct: 164 VTMPQIALLVFDE 176



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 113/276 (40%), Gaps = 53/276 (19%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+       L PS++  +E  +LA +L + I      F    SL++ A++     E+ +
Sbjct: 887  LPLEYSMFALLAPSIIHNVEIYLLAEELNKTI-LRPVAF-TDLSLVITAISASAAREATN 944

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +R+E LGDS+LK+  +  L    P  HEG LS  +   V N  L     +  L  +I  
Sbjct: 945  YQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRAKDTVVSNKRLSYAAIETGLDKFILL 1004

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
              F   +W  P           C  D LE    G                +  R M +KT
Sbjct: 1005 DVFTGAKWRPP-----------CNKDHLESEEQG----------------VPQREMSTKT 1037

Query: 1197 IADCAEALIGAYYVGGGLIAA-------LYMMKWLGIDADLEVSLVDDCITRASLRSYVP 1249
            +AD  EAL+ A  + GG   A       L  ++W+ ++  +            +L S VP
Sbjct: 1038 LADVVEALLAAATLDGGQRKAEKCLEIFLPELQWMPLEDRVN-----------ALYSSVP 1086

Query: 1250 RINE------IKDIESKIGYEFTVKFLLQEAITHAS 1279
               E       +++ES +GY F  K  L +A TH S
Sbjct: 1087 EAYENTLTSWFQEVESLVGYVFNKKVFLVQAFTHPS 1122


>gi|393246311|gb|EJD53820.1| ribonuclease III [Auricularia delicata TFB-10046 SS5]
          Length = 1227

 Score =  104 bits (259), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 170/429 (39%), Gaps = 90/429 (20%)

Query: 1009 PELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTT 1068
            PE+  R  +P S  ++ YL+P  ++R+E  +L   L    N    +  I   L+L A+++
Sbjct: 673  PEVCARFVIPASTFETAYLVPCCLRRIEDTLLVKLL----NHQFFDNEIEERLLLSAISS 728

Query: 1069 LGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDR 1128
               C     +RLELLGDSVLK+  S  LF+  P   E +L   R     N  L +     
Sbjct: 729  PSLCGDLDYQRLELLGDSVLKFLASAALFVRKPTSSESELHLGRQNIFSNRALTQAARRA 788

Query: 1129 KLQGYIRDSAFDPRRWVAPG----QLSLRP-------VPCECGVDTLEVPLDGKFFTQDT 1177
             L  +I    F  + W+ P     +   +P       +P +     L    + K    D 
Sbjct: 789  GLPPFILTKPFSIKSWIPPNYDFDRAPAKPLSEEDALIPEKVAAYKLAREREQK---ADA 845

Query: 1178 KVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDD 1237
            +  V +  D    W+G KTIAD  EA++GA ++ GG    L   K L       V L D 
Sbjct: 846  QARVKRQQDASEHWIGEKTIADVTEAILGAAFLTGGKNLVLRAAKRLA------VKLQDY 899

Query: 1238 CITRASL--RSYVP-RINEIKDIESKIGYEFTVKFLLQEAITHASVQ----------EFY 1284
               +A++  RS+V  R   ++ +E  +G       L+ +A+TH+ +           EF 
Sbjct: 900  VDVKANIPGRSHVQLRCESLEHVERLLGRPIQRPHLVAQALTHSVIDSSLATSYQRLEFL 959

Query: 1285 ----------------------------------------CYQ-NLYKHLQHCSTLLLSQ 1303
                                                    C Q  L+KH+ H S  L  +
Sbjct: 960  GDAILDLLVVRYIWRYEKLDPEALTLLKAAMVSNSTLAAVCVQCGLHKHIIHASPSLGVK 1019

Query: 1304 ITEYVKSFPKP-------GETTDSGP-----SMKAPKALGDLLESIVGAVLIDTKLNLDE 1351
            I  YVK+            ++    P      ++ PK L DL+ES++GA+ I     +  
Sbjct: 1020 IDNYVKALHSARDKERALAQSEVRQPVQYWLELEHPKPLSDLIESLLGALFISENYAIAP 1079

Query: 1352 VWRIFKPIL 1360
            +   F+ +L
Sbjct: 1080 LEAFFENVL 1088


>gi|118352386|ref|XP_001009465.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
            thermophila]
 gi|89291232|gb|EAR89220.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 2098

 Score =  104 bits (259), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 128/580 (22%), Positives = 232/580 (40%), Gaps = 153/580 (26%)

Query: 46   PRIYQLKVFE--VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
            PR YQ ++F+  +    N I  LETG GKT+++ M    IAQ   S      + FLA  V
Sbjct: 879  PRDYQEEIFKNLIQNYGNYIIFLETGTGKTLVSQM----IAQYTLSKFKGSKVAFLANQV 934

Query: 104  HLVHQQYDVI------------------RVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN 145
            +LV QQY+                     ++ +  +  ++G   +D W+   WQK + ++
Sbjct: 935  NLVEQQYNNFLTYQRSIEEYLVKQNLSEEINQNINISFFHGKMNLDFWNRSFWQKNVEQS 994

Query: 146  DVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD------- 198
             ++  + QI L+ LR+    L                   +TK    FY+ +D       
Sbjct: 995  QIIFFSSQIFLNGLRRGHFQLT-----------------QHTKFYL-FYNHNDRVKKNDI 1036

Query: 199  ---NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE 255
               N P + G++A+P+ + G     +   ++ +L   LD Q F   D  ++   + + K+
Sbjct: 1037 VLKNTPNIIGLSATPITQ-GNKGNFNVRREMLKLAHNLDCQ-FINYDLQKVYAQLRNIKQ 1094

Query: 256  SCRFY-------DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLR- 307
            + +FY       D      +++KG     + + D  L +LQ      Y ++ + +K L+ 
Sbjct: 1095 TEKFYEVNMNENDYQYIESNNIKG-----FDQADKVLYELQEQ----YPELKELYKQLQA 1145

Query: 308  ---------KQLSDYHAKILYCLDELGLICAYE----AVKICLEKVLKAQEECEIYRQSS 354
                     K  +    KI+  L+E  +I  Y+     V+  +  +L+  +   I    +
Sbjct: 1146 LSRLDNLASKAFTQILRKIINLLEEYIIILIYQIGVYVVQFFIFDILQELKGVNITAPKT 1205

Query: 355  LQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQ 414
            L  K  LE++L           + +  F   Y+       I+  L    Q+ LS    ++
Sbjct: 1206 LCMKQQLEDILQ----------QFYEIFRAKYNN------INNDLSNKSQVLLSILSKSE 1249

Query: 415  VLCIIFVERIIAAKVVERFVKKVPFLTHLT----VAYLTGSTTS-------------VDA 457
             + +IF    +  K V +F++ V F    +      Y+ G T+              +++
Sbjct: 1250 GISLIFCNSKVVVKYVTKFIQSV-FQNSNSDQKCCEYIMGQTSQNKKDEEDDNNLKIINS 1308

Query: 458  LTP-----------------------------------KVQKEVLESFRGGKVNLLFATD 482
            + P                                     Q++++E FR  +  +L +T 
Sbjct: 1309 INPYEIQNLKSQSVQQAQNIIQQEKQFSIKFYALKQKYSEQQKIVERFRNKQFKILVSTS 1368

Query: 483  VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
            V+EEG  +P+C+ VI F    +   YIQ +GRAR  NS+F
Sbjct: 1369 VVEEGFDIPSCNIVIAFSKIISQRQYIQMKGRARAENSKF 1408


>gi|341890882|gb|EGT46817.1| hypothetical protein CAEBREN_28255 [Caenorhabditis brenneri]
          Length = 1015

 Score =  104 bits (259), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 131/538 (24%), Positives = 241/538 (44%), Gaps = 73/538 (13%)

Query: 40  NSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIF 98
           +  N + R+YQ ++ + A + +N + V  TG GKT +A+    +  +  ++ G    +  
Sbjct: 227 DETNLVLRVYQEELVQPALEGKNCVIVGPTGCGKTEVAIYAALNHLRERQAAGQTGRVAM 286

Query: 99  LAPTVHLVHQQYDVIRVH--TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
           L P + LV QQ +    +    F V  ++G++  D  + +  + ++ ++ ++VMTPQIL+
Sbjct: 287 LVPKIPLVTQQKERFLQYCRGSFTVNGFFGSEKSDSGEGR--KDDVIESHIVVMTPQILI 344

Query: 157 DALR--KAFLSLDIVCF--IVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTA---- 208
           + L+  +A   L +  F  ++ DE H ATGNHPY  I +       +KP++ G+TA    
Sbjct: 345 NMLQSVRANERLYVADFSMMIFDEVHKATGNHPYVIINQIVQEWEYDKPQIIGLTASLNV 404

Query: 209 SPVVRKGVS------------------SAMDCEGQISELESTLDSQVFTIEDKTEMEVFV 250
           S   +K +S                  S +  +  I EL    +  V   +D   +EV  
Sbjct: 405 SSTAQKDLSQMLFSIHTMLALLNAPYLSTIKLQASIDEL----NKHVSKPDDS--VEVCQ 458

Query: 251 PSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCY-KDMDDKHKTLRKQ 309
           P+A  + R Y ++    + +K   E+       SLSKL+    NC+  +   + K L  +
Sbjct: 459 PTAT-ALRNYIETYLGTAHIKLCHELE------SLSKLRH---NCFPSNSYRRFKKLSPK 508

Query: 310 LSDYHAKILYCLDE--LGLICAYEAVKICLEKVLKAQEECE--IYRQSSLQCKYFLEEVL 365
             + +   L  +++    L  A + + +   K ++   E    +    +     F+E  +
Sbjct: 509 FYEIYESNLQNINQDLKKLNTAEKTIAVTWMKYIRLYVEARGMVDLMPARLVFEFMEARI 568

Query: 366 HVIGSALPLADKIFLDF-----GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIF 420
             +     L D+ F DF     G + +   D   I TKL + L     F  +     IIF
Sbjct: 569 RELDKGHKLGDQ-FSDFFKKYSGLEANAKSDEPMIVTKLKDTL--ITQFKVTPDSRVIIF 625

Query: 421 VERIIAAKVVERFVKKVPFLTHL----------TVAYLTGSTTSVDALTPKVQK--EVLE 468
           V +   A+ +  F+ K   +              V ++ G+     A+    Q+  +VL 
Sbjct: 626 VTQRATAQRISDFLNKSHIMDQFRDPDDDGYDEMVGFVLGTNNQGGAVQQSQQEQQKVLS 685

Query: 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK-TVSSYIQSRGRARQHNSQFILM 525
            F  GK+ ++ AT V+EEG+ V +C+ +I+++    +    +Q RGRAR  NS+ +L+
Sbjct: 686 RFNNGKMKVIVATSVVEEGLDVTSCNLIIKYNCSSGSAIQLVQRRGRARAKNSRSVLL 743


>gi|299747526|ref|XP_001837094.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130]
 gi|298407559|gb|EAU84711.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130]
          Length = 1499

 Score =  104 bits (259), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 127/489 (25%), Positives = 187/489 (38%), Gaps = 134/489 (27%)

Query: 990  KGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEIN 1049
            +  K G  TK  Q + ++ PEL  +  +P S+ ++ YL+PS++ +L+ L +     +E+N
Sbjct: 907  RTEKEGHQTKG-QQNANLIPELCAKCTIPASMFRTSYLIPSILWKLDHLFVV----KELN 961

Query: 1050 CHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLS 1109
                +  I   L+  A TT+      + ERLELLGD+ LKY  S  +F+  P ++EG L 
Sbjct: 962  MQFFDNAIDEELLYMATTTVSAEMEHNYERLELLGDAFLKYLASVVVFVMNPTQNEGSLH 1021

Query: 1110 ARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRW-----VAPGQLSLRPVPCECGVDTL 1164
              R   + N  L    T   L  YI    F  R W      +  ++S  P     GV   
Sbjct: 1022 VARQRLISNKALLACATQVGLPAYICSKPFLLRGWRPWPSASFTEISKAPDKPGTGVAEQ 1081

Query: 1165 EV-----------------PLDGKFFTQDTKVVVGK------------------PCDMGH 1189
            EV                 P       QD+   V +                  P +   
Sbjct: 1082 EVDTCKARAQNESAGESQTPPSADHDKQDSDQEVEEGAKTESSQKKRKRKKWKDPMNQNL 1141

Query: 1190 RWMGS-KTIADCAEALIGAYYVGGGLIAALYMMKWLGID-------ADLEVSLVDDCITR 1241
            + +G  K IAD  EA+IGA YV GG   AL + K L I        +DL + +V    T 
Sbjct: 1142 QNLGDKKAIADVTEAIIGAAYVSGGRETALDVAKALSIPIPGINTWSDLGMQVVIPFTTD 1201

Query: 1242 ASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ--EFYCYQNL---------- 1289
            A       R   I+ +E  IG+ F    LL + +TH SV   +   Y+ L          
Sbjct: 1202 A----IELRPGSIEAVEGIIGHRFQQPHLLAQILTHTSVHGSKVLTYERLEFIGDAILDF 1257

Query: 1290 ----------------------------------------YKHLQHCSTLLLSQITEYVK 1309
                                                    YKHL   S  L S I +Y +
Sbjct: 1258 MVIRHIFDRERTLSPGGLTMLKGAMVANSTLATVCILSGIYKHLVFGSYQLSSAIEDYAE 1317

Query: 1310 SFPK---------------PGETTDSGPSMKAPKALGDLLESIVGAVLID-------TKL 1347
            +  +               PG+     P ++ PKAL D++ESI+GA+ I        T+ 
Sbjct: 1318 AINERADKEYALAEQENRMPGQF---WPDIEPPKALSDVIESIIGALYISDNFCPVGTEA 1374

Query: 1348 NLDEVWRIF 1356
              D+V R F
Sbjct: 1375 FFDKVLRPF 1383



 Score = 77.4 bits (189), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 121/570 (21%), Positives = 222/570 (38%), Gaps = 90/570 (15%)

Query: 145 NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH-----PYTKIMKEFYHK--S 197
           +DV+V T Q LL+   K  + L  V  ++I++  H   +      P  + M+ FY    +
Sbjct: 151 HDVIVTTSQTLLELFSKDLVQLRQVQVVIIEDAQHVKAHDCYSFLPIVQFMRLFYSPCPA 210

Query: 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF--TIEDKTEMEVFVPSAKE 255
             +P++F +  SP +     +    + +  +LE TL S+ +  T E +TE+        E
Sbjct: 211 YERPRLFSLVLSPDL-----AQHPFDSRSLKLEITLHSKTYGVTEEKRTEIIDLPDRPNE 265

Query: 256 SCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHA 315
               YD+S          LE ++S   + L           + +D K   +RK+L  + A
Sbjct: 266 VVVLYDKS--------ASLETTFSSLPSQL-----------RALDPKMTVIRKRL--HEA 304

Query: 316 KILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLE----EVLHVIGSA 371
           +++    ++G   A   +K+ LE+  +         +  +     LE    E +      
Sbjct: 305 ELIET--QIGPCAAELWLKMSLEEFGRDMPVSSEAPKDDVGGTKLLEARICEKIRNWSCT 362

Query: 372 LPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE 431
            P  +          S   ++ +   +  + L   L +G   Q   +IFV+R   A  + 
Sbjct: 363 PPELNP--------SSPGFNVTHKFLRFLQALDACLDYG--AQFRAVIFVQRKSTALALA 412

Query: 432 RFVKKVP-----FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEE 486
             +K +P     F++  +V   +   T         Q+E   +F  G  NLL  T    E
Sbjct: 413 EIIKHLPDGRFKFISPCSVFGKSRLET---------QQETFTNFASGVYNLLVVTRSAME 463

Query: 487 GMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIR-SER 545
            + +P  + V+RFDL  +   Y Q +  AR   S  I ++ER N   R  L +    +ER
Sbjct: 464 -LDIPKATVVVRFDLMDSQFLYGQIKACARGRESHLIHLVERHNDSHRRILSNAASDAER 522

Query: 546 SVTDTALSRDPEACFLKACTY--------------VKTKSYI-VESTGASVTTDSSVNLI 590
                   RDPE   +                   +    Y+   +TG  +    ++  +
Sbjct: 523 LFEWFDGLRDPEGLVVPPANLKESSMSYYSESDEDIDKPDYVSAATTGGRLYPQDAIVTL 582

Query: 591 HRYCEMLPSDKYYTP-KPIFKYKSAEE------AYECELTLPSNAPFQTIVGPTSRNKNL 643
            ++   L    Y      +F+Y+S          + C+++LP   P   +V      K +
Sbjct: 583 VKFASYLREQGYLEAGHSLFEYQSIPANPGQPLQFACKISLPGT-PVDGMVSAPEMTKTI 641

Query: 644 SKQLVCLEACEKLHQVGALNDHLLPSVEEP 673
           S++     AC++L  +G L+  ++P    P
Sbjct: 642 SRRAAAFSACKRLASLGLLDYRIVPLPSTP 671


>gi|240103224|ref|YP_002959533.1| Hef nuclease [Thermococcus gammatolerans EJ3]
 gi|239910778|gb|ACS33669.1| Hef, Helicase-associated endonuclease for fork-structured DNA (Hef)
           [Thermococcus gammatolerans EJ3]
          Length = 801

 Score =  103 bits (258), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 142/521 (27%), Positives = 229/521 (43%), Gaps = 94/521 (18%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR+YQ  ++   K RN + VL TG GKT+IA MLI D     + + +   ++FLAPT  L
Sbjct: 11  PRVYQEVIYARCKERNCLVVLPTGLGKTLIA-MLIADY----RLSKYGGKVLFLAPTKPL 65

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKG--VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
             Q  +  R   +   E+     G    E  ++ W+K +    V+  TPQ + + +    
Sbjct: 66  AMQHAESFRRLFNLPPEKINVLTGELSPEKRAELWRKSV----VVTATPQTVENDILTGR 121

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
           +SL+ V  +V+DE H A GN+ Y  I +E Y K+   P V G+T         +S    E
Sbjct: 122 ISLEDVVLLVVDEAHRAVGNYAYVFIARE-YLKTAKHPLVLGLT---------ASPGSDE 171

Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPS-----AKESCR------FYDQSKFCGSDLKG 272
            +I E+   L   +  IE +TE    V       A E  R      + +  K     LK 
Sbjct: 172 EKIREIVENLG--IERIEVRTESSPDVKPYVHRIAFEWVRVELPGIYREVRKILREMLKD 229

Query: 273 KLE-------VSWSKFDASLSKL--QGSQLNCYKDMDD-------KHKTLRKQLSDYHAK 316
            L+       VS    D S  ++   GS++N      D       KH+   K +  +HA 
Sbjct: 230 SLKPLADAGLVSSPSPDISKKEVLQAGSKINQAMAKGDYSAGYLKKHQA--KAMKLHHA- 286

Query: 317 ILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLAD 376
            +  L+  GL      +K   E   K+  E        L     + +V++++  A  L  
Sbjct: 287 -IELLETQGLTALRNYLKKLREDRSKSSRE--------LMEDPRMRKVIYLLVQAKEL-- 335

Query: 377 KIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVK 435
                 G D+ K         KL +L++  L     +++  I+F   R    K+VE    
Sbjct: 336 ------GLDHPKM-------EKLKDLIKKQLERKPDSKI--IVFTNYRDTGKKIVEE--- 377

Query: 436 KVPFLTHLTVA---YLTGSTTSVD-ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
               L +L V+   ++  ++   D  ++ K QKEVL+ F  G+ N+L AT V EEG+ VP
Sbjct: 378 ----LRNLGVSAERFIGQASRGTDRGMSQKEQKEVLDRFSRGEFNVLVATSVGEEGLDVP 433

Query: 492 NCSYVIRFD-LPKTVSSYIQSRGRARQHN-SQFILMLERGN 530
               V+ ++ +P  + S IQ RGR  +H   + ++++ +G 
Sbjct: 434 EVDLVVFYEPVPSAIRS-IQRRGRTGRHRPGKVVILMAKGT 473


>gi|386002261|ref|YP_005920560.1| Putative ATP-dependent RNA helicase [Methanosaeta harundinacea 6Ac]
 gi|357210317|gb|AET64937.1| Putative ATP-dependent RNA helicase [Methanosaeta harundinacea 6Ac]
          Length = 788

 Score =  103 bits (258), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 132/510 (25%), Positives = 224/510 (43%), Gaps = 66/510 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R++QL++   A + +T+ VL TG GKT++A+M++  IA+  +       ++FLAPT  LV
Sbjct: 18  RLFQLELAASALQASTLVVLPTGLGKTVVALMVL--IARLNRGK-----VLFLAPTKPLV 70

Query: 107 HQQYDVIR-VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            Q    +  V  D  +   +  + + E   + W++      ++V TPQ++ + L    +S
Sbjct: 71  EQHASFLENVLADSTIVASFTGEILPERRKEMWEE----AKIVVSTPQVIENDLLSRRIS 126

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQ 225
           L  V  I+ DE H A GN+ Y  I  E Y +      V G+TASP     +    +  G 
Sbjct: 127 LRDVSCIIFDEAHRAVGNYAYVYIA-ERYGREGTDRLVLGITASP--GSSLERIEEVCGN 183

Query: 226 IS----ELESTLDSQVFTIEDKTEMEVF---VPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
           I     E ++  D  V     + E+EV    VP   +  R               LE   
Sbjct: 184 IGATRIETKTEADPDVSPFVHQREIEVVKVAVPPEIQRVRSL-------------LEEVL 230

Query: 279 SKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL 337
            +   +L +L GS  L   K MD   +T +K+L D   ++   + +      Y+AV +  
Sbjct: 231 EERGEALDRLGGSDGLRMPKRMD---RTSKKELLDLQKRLRGLIAKNPSPSLYQAVSVLA 287

Query: 338 EKVLKAQEECEIYRQSSLQC-KYFLEEVLHVIGS--ALPLADKIFLDFGFDYSKAVDLGY 394
           E VLK +   E+     +     +LE +     S      A +I  D   + +   DL  
Sbjct: 288 E-VLKLKHAVELAETQGVDSLGRYLERLASEAESRGGSKAAKRIMEDPRVEEAVG-DLAR 345

Query: 395 IST---KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVV-------ERFVKKVPFLTH 442
           +     KL  +L+L       K+   + +    R  A+ V+       +  ++ V F+  
Sbjct: 346 MDVDHPKLRAVLELVKEQLTAKADSRIMVFTNYRDTASSVLDYLREAGDEIIRPVRFVGQ 405

Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD-L 501
                   S  S + L+ + Q E+L+ FR G  N+L AT V EEG+ +P    V+ ++ +
Sbjct: 406 -------SSRASDEGLSQRRQAEILQKFREGAYNVLIATSVGEEGIDIPATDLVLFYEPV 458

Query: 502 PKTVSSYIQSRGR-ARQHNSQFILMLERGN 530
           P  + S IQ +GR  R    + ++++ RG 
Sbjct: 459 PSEIRS-IQRKGRTGRARAGRVVVLVARGT 487


>gi|195996287|ref|XP_002108012.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens]
 gi|190588788|gb|EDV28810.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens]
          Length = 915

 Score =  103 bits (257), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 123/504 (24%), Positives = 197/504 (39%), Gaps = 102/504 (20%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPS-SLILEALTTLGCCESF 1075
            VPISV K L+  P   +RL    L S+L+   N        PS S++L+ALT+L   + F
Sbjct: 431  VPISVSKRLF--PKFHRRL----LHSKLKSNRNKAVLKRPGPSVSMLLQALTSLSADDFF 484

Query: 1076 SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIR 1135
            + ERLE+LGDS LK+  +   F   P   EG +S  R+  V NS L +    + L  Y  
Sbjct: 485  NHERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVSNSHLSRTSKLKGLTLYQF 544

Query: 1136 DSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSK 1195
            ++ F  ++W+ PG   +R        + L    DG            +  +   + M  K
Sbjct: 545  NTPFKLKQWLPPGFTCIRNNANLVANNMLT---DGS---------KQRDSESFKQVMSVK 592

Query: 1196 TIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIK 1255
             I+D  E L+G Y +  G + A  ++ W+G+D D  V +  D     S+   +P  +E  
Sbjct: 593  NISDTVEGLVGVYSLASGPVDAARLLPWIGLDIDPNVLIEKD----KSVNFEIPTTDEDI 648

Query: 1256 DIESKI----GYEFTVKFLLQEAITHASVQ--------------------EF-YCYQ--- 1287
             + S I     Y+F   + L+ A TH+SV                     EF YC +   
Sbjct: 649  QLSSCILRNTDYQFNNFYWLRIAFTHSSVASENYQRLEYLGDAILEYLLIEFVYCRKPYF 708

Query: 1288 -------------------------NLYKHLQHCSTLLLSQITEYVKSF----------- 1311
                                       Y H++ C + L   I + +++F           
Sbjct: 709  GPGKISHFKSVMTRNQTFSLIAIAFQFYTHIR-CHSKLKLDIMDSIQNFKEILLDNHQDD 767

Query: 1312 --PKPGETTD-------SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSP 1362
              P  G   +       S    K PK   D+ E+ + A+ +D    L  VW++   ++  
Sbjct: 768  HQPDIGHFANLAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCGKKLRTVWKVVYKMVQR 827

Query: 1363 IVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQL---KDVLLVGEGQER 1419
            I+     ++  L   I   D     ++     +        R+ L   K  +L  EG   
Sbjct: 828  ILADILNDVGGLTSTIH--DMFPNRIRYQVIKRSNSSKKHRRMFLDHPKLGMLTSEGIGT 885

Query: 1420 SRKAAKGKAASQLLKKLEVCEKRI 1443
            S  +AK  A   +L  LE  ++ I
Sbjct: 886  SNTSAKDDAIRNMLSHLECSDQEI 909


>gi|409080003|gb|EKM80364.1| hypothetical protein AGABI1DRAFT_128037 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1365

 Score =  103 bits (256), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 121/490 (24%), Positives = 200/490 (40%), Gaps = 111/490 (22%)

Query: 959  LIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVP 1018
            L HP QP+L + +   P N L        +   S+  +  K  Q   ++ PE   R+ V 
Sbjct: 888  LAHPNQPILEVMRMPAPTNYL--------NPPISQLELPAKTTQ---YLIPECCRRLTVS 936

Query: 1019 ISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSME 1078
             S ++  YLLPS+++R++  +L  QL    N  + N  +   L++ A ++      ++ E
Sbjct: 937  ASTLRMGYLLPSIIRRIDEFLLIKQL----NAKNLNHCVKDDLLIMATSSPLAGNDYNYE 992

Query: 1079 RLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSA 1138
            RLELLGD++LKY  + ++F+      EG+L   R   + N  L  + +   L GYI+   
Sbjct: 993  RLELLGDALLKYLSTTYVFVQNLNGTEGELHTARQRFISNRQLCDIVSGWGLPGYIQLKP 1052

Query: 1139 FDPRRWVAPG--------------------QLSLRPV-PCECGVDTLEVPLDGKFFTQDT 1177
            F+ + W+ PG                     L++RP  P E  +   + P   K   +  
Sbjct: 1053 FNIKSWLPPGMIIDDRQKESTVGGGVMDDGHLNMRPAQPNEDRIGASKRP---KNKKRRL 1109

Query: 1178 KVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDD 1237
                  P       + +KT+AD AEA+IGA Y+ GG  +AL   K L I    +V    D
Sbjct: 1110 NKKTSSP-------IANKTVADVAEAIIGAAYISGGRDSALKATKALMIPFT-DVEEWAD 1161

Query: 1238 CITRASL----RSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ------------ 1281
               +AS       + P  + +  IE+  G+ F    LL+  +T  S++            
Sbjct: 1162 FGRKASAPRLDTGHAPEPSVMHFIETITGFRFQQPSLLRLTLTQNSMEMKDHQRLEFLGD 1221

Query: 1282 ---EFYCYQNLYKHLQHCS--------TLLLSQ-------------------------IT 1305
               +F   + LY   +H S        +L++S                          + 
Sbjct: 1222 AVLDFLVVRYLYDKDEHASPGELSVMKSLMVSNSILAAICVWSGLHRFVHVRQQQKQVVW 1281

Query: 1306 EYVKSF--PKPGETTDSGP----------SMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1353
            +Y K+    +  ET+ +             +  PK L D++ESI+GA  I    +   V 
Sbjct: 1282 DYEKALRGREAAETSSTSKEAARVTYFWMDLDVPKVLSDVIESIIGAAYISDDFSQAGVE 1341

Query: 1354 RIFKPILSPI 1363
             IF  +L P 
Sbjct: 1342 VIFDKMLLPF 1351


>gi|224576589|gb|ACN56968.1| At1g01040-like protein [Capsella grandiflora]
          Length = 180

 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 97/196 (49%), Gaps = 32/196 (16%)

Query: 1090 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQ 1149
            + VS  LFL YP+KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG 
Sbjct: 1    WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG- 59

Query: 1150 LSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM----------------GHRWMG 1193
                 VP     DT E      FF ++ K +  +  D+                 +R + 
Sbjct: 60   -----VPPVFDEDTKE----SSFFDEEQKPLSKENSDVFEDGEMEDGEXEGDLSSYRVLS 110

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1253
            SKT+AD  EALIG YYV GG IAA ++M W+GI  + +   V+  +  A++   V     
Sbjct: 111  SKTLADVVEALIGVYYVEGGKIAANHLMTWIGIHVEDDPEEVEGTVKPANVPESV----- 165

Query: 1254 IKDIESKIGYEFTVKF 1269
            +K I+  +G E  +KF
Sbjct: 166  LKSIDF-VGLERALKF 180


>gi|402595090|gb|EJW89016.1| type III restriction enzyme [Wuchereria bancrofti]
          Length = 1410

 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 133/298 (44%), Gaps = 79/298 (26%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            +L+ALT     +  S+ERLE +GDS LKYAV+ +LF T P++HEG+LS  RS  V N  L
Sbjct: 894  LLQALTLSNASDGISLERLETVGDSFLKYAVTDYLFHTNPEQHEGKLSFARSKEVSNCNL 953

Query: 1122 HKLGTDRKLQGYIRDSAFDPRR-WVAP--------------------------------- 1147
            ++LG    L   I  S FDP   W+ P                                 
Sbjct: 954  YRLGRKHNLPSLIIGSKFDPNDGWLPPCYAPTSDFKAPNTLDAEERDKFIENVLEGKAVE 1013

Query: 1148 GQLSLRPVPC--------------ECGVDTLEVPLDGKFFTQDTKVVVGKPCD-MGHRWM 1192
            GQ +++ +P                 G++T+E P      + D + +   P + +  + +
Sbjct: 1014 GQETVK-IPTGWDEADRNGQVRRIANGIETIEFP-KNMTTSWDGEEITPLPYNLLTQQSL 1071

Query: 1193 GSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITR---------AS 1243
            G K+IAD  E+LIGA+ +  G  A L  MKWLG+    E   ++  + R          S
Sbjct: 1072 GDKSIADAVESLIGAHLLELGPTATLKFMKWLGLKVLTEPVQMEQPLLRFIDTTDQPDKS 1131

Query: 1244 LRSYVPRINEI------KDIESKIGYEFTVKFLLQEAITHASVQEFY------CYQNL 1289
            LR    ++N++        +E  IGY F  +  L +A THAS   +Y      CYQ L
Sbjct: 1132 LR----KLNDLWIQFQFSKLEDCIGYRFNDRAYLLQAFTHAS---YYKNRITGCYQRL 1182



 Score = 73.9 bits (180), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 14/159 (8%)

Query: 572 YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKP----IFKYKSAEEAYECELTLPSN 627
           Y VESTGA VT  ++++L++RYC  LPSD +    P    + +       Y  EL LP N
Sbjct: 31  YTVESTGAQVTLTTAISLVNRYCAKLPSDIFTRLVPQNTIVPETIGDRVMYRAELLLPIN 90

Query: 628 APFQTIVGPTS--RNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSE-NNLISKKNE 684
           +P +  +       +K L++  V LEAC +LH+   LND+LLP  ++      L    +E
Sbjct: 91  SPIKETIKLKKPLESKKLAQMAVALEACRRLHKRKELNDYLLPVGKDTIMLTALDEDPDE 150

Query: 685 SLPG----AGTTKRKELHGTTPIRALSG---RWGEKCGV 716
            +P      G+ +R++L+     +AL       GE+C +
Sbjct: 151 FIPNMSYKVGSARRRQLYDKRMAKALHNAIPHAGEECYI 189



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 11/126 (8%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV-----TPDKLELPPLRELIELC 1381
            PKA+GD+ ES+ GA+ +D+  +L+ VWR+F  ++   +      P +    P+REL+E+ 
Sbjct: 1288 PKAMGDIFESVAGAIYLDSGRSLNIVWRVFYNLMKETIDECCSNPPR---SPIRELLEME 1344

Query: 1382 DSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEK 1441
                 F K    L+   V   + +Q K     G G  RS + AK  AA + L+ L   +K
Sbjct: 1345 PERARFSKLERILETGKVRVTVDIQGK-CRFTGMG--RSYRIAKCTAAKRALRYLRSLKK 1401

Query: 1442 RISKGA 1447
               + A
Sbjct: 1402 EKERVA 1407



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 11/150 (7%)

Query: 903  DAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 958
            DA   +D +V+  +  R     Y + EI++      P     DD   TF +YF +KY I+
Sbjct: 351  DAAKFQDAIVMPWYRDRDHPSFYYVAEIID----AKPSSKFPDDKFITFNDYFIQKYNII 406

Query: 959  LIHPGQPLLRLKQSHNPHNLLV--NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVD 1016
            +    QPLL +  + +  NLL+  +++         +S  +    Q  + + PEL+    
Sbjct: 407  IYDQEQPLLDVDYTSSRLNLLMPRHWSRSKSRVTEERSSESGGISQGQI-LVPELVDVHP 465

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLRE 1046
            +  S+   +  LP+++ R+ SL+LA +LRE
Sbjct: 466  IAASLWNVIAALPTLLYRINSLLLADELRE 495


>gi|395826380|ref|XP_003786396.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 1
           [Otolemur garnettii]
          Length = 678

 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 132/526 (25%), Positives = 228/526 (43%), Gaps = 66/526 (12%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +     +  ++ L   VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVD----RAKVVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +  R   D  + +    G  G        +      +D+L+ T ++L  A+    
Sbjct: 60  VTQHGEEFRRMLDGRWSMVTLSGDMG----SRAGFGHLARSHDLLICTAELLQTAMTSPE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKG 215
            +  + L     +V+DECHH   +  Y  I+  +      ++ + P+V G+TASP    G
Sbjct: 116 EEEHVELTAFSLLVVDECHHTHKDTVYNVILSRYLEHKLQRAPSLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD------QSKFC 266
              A   +G I+   +L + LD+    +  ++         ++ C+ YD      Q  F 
Sbjct: 172 TGGASKLDGAINHILQLCANLDTWCI-MSPQSSCSQLHEYNQQPCKQYDICHRRSQDPF- 229

Query: 267 GSDLKGKLEVSWSKFDA-SLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELG 325
           G  LK  ++    + D   LS+  G Q+   + +D         L +     L+      
Sbjct: 230 GDLLKKLMDQVHDRLDMPELSRDFGMQIYEQQMVDLSRDAAENGLQERRVYALHLRRYND 289

Query: 326 LICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            +  ++ V+  ++ +   Q+     R +  Q  Y               A++  L   FD
Sbjct: 290 ALLIHDTVR-AVDALATLQDFYNRERTTKTQVLY---------------AERWLLAL-FD 332

Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKV 437
            +K   L +++T      KL E+L+  L   FGK      IIF     +A  +  ++++ 
Sbjct: 333 DNKNA-LAHLATHGPENPKL-EVLERILQEQFGKPNSPRGIIFTRTRQSAHSLLLWLQQQ 390

Query: 438 PFLTHLTV--AYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           P L  + +    L GS  S     +T + Q+EV++ FR G +NLL +T V EEGM +P+C
Sbjct: 391 PGLQMVDIKAQMLIGSRNSGQRAHMTQRNQQEVIQKFRIGILNLLVSTSVAEEGMDIPHC 450

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           + V+R+ L     S +Q+RGRAR   S +  +   G+ + R +L +
Sbjct: 451 NVVVRYGLLTNEISMVQARGRARASQSVYSFVAAEGSRELRRELIN 496


>gi|224576591|gb|ACN56969.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576601|gb|ACN56974.1| At1g01040-like protein [Capsella grandiflora]
          Length = 180

 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 97/196 (49%), Gaps = 32/196 (16%)

Query: 1090 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQ 1149
            + VS  LFL YP+KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG 
Sbjct: 1    WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG- 59

Query: 1150 LSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM----------------GHRWMG 1193
                 VP     DT E      FF ++ K +  +  D+                 +R + 
Sbjct: 60   -----VPPVFDEDTKE----SSFFBEEQKPLSKENSDVFEDGEMEDGELEGDLSSYRVLS 110

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1253
            SKT+AD  EALIG YYV GG IAA ++M W+GI  + +   V+  +  A++   V     
Sbjct: 111  SKTLADVVEALIGVYYVEGGKIAANHLMTWIGIHVEDDPEEVEGTVKPANVPESV----- 165

Query: 1254 IKDIESKIGYEFTVKF 1269
            +K I+  +G E  +KF
Sbjct: 166  LKSIDF-VGLERALKF 180


>gi|224576579|gb|ACN56963.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576581|gb|ACN56964.1| At1g01040-like protein [Capsella grandiflora]
          Length = 180

 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 97/196 (49%), Gaps = 32/196 (16%)

Query: 1090 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQ 1149
            + VS  LFL YP+KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG 
Sbjct: 1    WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG- 59

Query: 1150 LSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM----------------GHRWMG 1193
                 VP     DT E      FF ++ K +  +  D+                 +R + 
Sbjct: 60   -----VPPVFDEDTKE----SSFFDEEQKXLSKENSDVFEDGEMEDGELEGDLSSYRVLS 110

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1253
            SKT+AD  EALIG YYV GG IAA ++M W+GI  + +   V+  +  A++   V     
Sbjct: 111  SKTLADVVEALIGVYYVEGGKIAANHLMTWIGIHVEDDPEEVEGTVKPANVPESV----- 165

Query: 1254 IKDIESKIGYEFTVKF 1269
            +K I+  +G E  +KF
Sbjct: 166  LKSIDF-VGLERALKF 180


>gi|426198231|gb|EKV48157.1| hypothetical protein AGABI2DRAFT_202619 [Agaricus bisporus var.
            bisporus H97]
          Length = 1179

 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 121/490 (24%), Positives = 199/490 (40%), Gaps = 111/490 (22%)

Query: 959  LIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVP 1018
            L HP QP+L + +   P N L        +   S+  +  K  Q  +   PE   R+ V 
Sbjct: 702  LAHPNQPILEVMRMPAPTNYL--------NPPISQLELPAKTTQFLI---PECCRRLTVS 750

Query: 1019 ISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSME 1078
             S ++  YLLPS+++R++  +L  QL    N  + N  +   L++ A ++      ++ E
Sbjct: 751  ASTLRMGYLLPSIIRRIDEFLLIKQL----NAKNLNHCVKDDLLIMATSSPLAGNDYNYE 806

Query: 1079 RLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSA 1138
            RLELLGD++LKY  + ++F+      EG+L   R   + N  L  + +   L GYI+   
Sbjct: 807  RLELLGDALLKYLSTTYVFVQNLNGTEGELHTARQRFISNRQLCDIVSGWGLPGYIQLKP 866

Query: 1139 FDPRRWVAP--------------------GQLSLRPV-PCECGVDTLEVPLDGKFFTQDT 1177
            F+ + W+ P                    G L +RP  P E  +   + P + K      
Sbjct: 867  FNIKSWLPPGMTIDDRQKESTVGGGVVDDGHLDMRPAQPNEDRIGASKRPKNKKRRLNKK 926

Query: 1178 KVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGID-ADLEVSLVD 1236
             +            + +KT+AD AEA+IGA Y+ GG  +AL   K L I  AD+E    D
Sbjct: 927  TLSP----------IANKTVADVAEAIIGAAYISGGRDSALKATKALMIPFADVE-EWAD 975

Query: 1237 DCITRASLR---SYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ------------ 1281
                 ++ R    + P  + +  IE+  G+ F    LL+  +T  S++            
Sbjct: 976  FGRKASAPRHDTGHAPEPSVMHFIETITGFRFQQPSLLRLTLTQNSMEMKDHQRLEFLGD 1035

Query: 1282 ---EFYCYQNLYKHLQHCS--------TLLLSQ-------------------------IT 1305
               +F   + LY   +H S        +L++S                          + 
Sbjct: 1036 AVLDFLVVRYLYDKDEHASPGELSVMKSLMVSNSILAAICVWSGLHRFVHVRQQQKQVVW 1095

Query: 1306 EYVKSF--PKPGETTDSGP----------SMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1353
            +Y K+    +  ET  +             +  PK L D++ESI+GA  I    +   V 
Sbjct: 1096 DYEKALRGREAAETASTSKEAARVTYFWMDLDVPKVLSDVIESIIGAAYISDDFSQAGVE 1155

Query: 1354 RIFKPILSPI 1363
             IF  +L P 
Sbjct: 1156 VIFDQMLLPF 1165


>gi|224576609|gb|ACN56978.1| At1g01040-like protein [Capsella grandiflora]
          Length = 180

 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 97/196 (49%), Gaps = 32/196 (16%)

Query: 1090 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQ 1149
            + VS  LFL YP+KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG 
Sbjct: 1    WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG- 59

Query: 1150 LSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM----------------GHRWMG 1193
                 VP     DT E      FF ++ K +  +  D+                 +R + 
Sbjct: 60   -----VPPVFDEDTKE----SSFFDEEQKPLSKEXSDVFEDGEMEDGELEGDLSSYRVLS 110

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1253
            SKT+AD  EALIG YYV GG IAA ++M W+GI  + +   V+  +  A++   V     
Sbjct: 111  SKTLADVVEALIGVYYVEGGKIAANHLMTWIGIHVEDDPEEVEGTVKPANVPESV----- 165

Query: 1254 IKDIESKIGYEFTVKF 1269
            +K I+  +G E  +KF
Sbjct: 166  LKSIDF-VGLERALKF 180


>gi|224576553|gb|ACN56950.1| At1g01040-like protein [Capsella rubella]
 gi|224576555|gb|ACN56951.1| At1g01040-like protein [Capsella rubella]
 gi|224576557|gb|ACN56952.1| At1g01040-like protein [Capsella rubella]
 gi|224576559|gb|ACN56953.1| At1g01040-like protein [Capsella rubella]
 gi|224576561|gb|ACN56954.1| At1g01040-like protein [Capsella rubella]
 gi|224576563|gb|ACN56955.1| At1g01040-like protein [Capsella rubella]
 gi|224576565|gb|ACN56956.1| At1g01040-like protein [Capsella rubella]
 gi|224576567|gb|ACN56957.1| At1g01040-like protein [Capsella rubella]
 gi|224576569|gb|ACN56958.1| At1g01040-like protein [Capsella rubella]
 gi|224576571|gb|ACN56959.1| At1g01040-like protein [Capsella rubella]
 gi|224576573|gb|ACN56960.1| At1g01040-like protein [Capsella rubella]
 gi|224576575|gb|ACN56961.1| At1g01040-like protein [Capsella rubella]
 gi|224576577|gb|ACN56962.1| At1g01040-like protein [Capsella rubella]
 gi|224576583|gb|ACN56965.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576585|gb|ACN56966.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576587|gb|ACN56967.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576593|gb|ACN56970.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576595|gb|ACN56971.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576597|gb|ACN56972.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576599|gb|ACN56973.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576603|gb|ACN56975.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576605|gb|ACN56976.1| At1g01040-like protein [Capsella grandiflora]
          Length = 180

 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 97/196 (49%), Gaps = 32/196 (16%)

Query: 1090 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQ 1149
            + VS  LFL YP+KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG 
Sbjct: 1    WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG- 59

Query: 1150 LSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM----------------GHRWMG 1193
                 VP     DT E      FF ++ K +  +  D+                 +R + 
Sbjct: 60   -----VPPVFDEDTKE----SSFFDEEQKPLSKENSDVFEDGEMEDGELEGDLSSYRVLS 110

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1253
            SKT+AD  EALIG YYV GG IAA ++M W+GI  + +   V+  +  A++   V     
Sbjct: 111  SKTLADVVEALIGVYYVEGGKIAANHLMTWIGIHVEDDPEEVEGTVKPANVPESV----- 165

Query: 1254 IKDIESKIGYEFTVKF 1269
            +K I+  +G E  +KF
Sbjct: 166  LKSIDF-VGLERALKF 180


>gi|380492403|emb|CCF34628.1| RNase3 domain-containing protein [Colletotrichum higginsianum]
          Length = 1362

 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 97/176 (55%), Gaps = 16/176 (9%)

Query: 66  LETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEY 124
           ++TG+GKT +AV+ I+     ++    K ++ FLAPTV L  QQ+ V++    + +++  
Sbjct: 1   MDTGSGKTQVAVLRIR---AEVERTSSKHIVWFLAPTVSLCAQQFAVLQSQIPEVQIKFL 57

Query: 125 YGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN 183
            G   VD W  Q  W + ++   ++V T QILLDAL  AF+ ++ +  +V DE H+  G 
Sbjct: 58  SGEDNVDAWSDQGTWDEVLHNVRIVVSTYQILLDALSHAFVRMERLSLVVFDEAHNCIGK 117

Query: 184 HPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS 235
            P +KIM  FYH+   +    P + G+TASP            EG I  LE+TLD+
Sbjct: 118 SPGSKIMTVFYHEEKRRGHHIPHILGLTASPTF------GSKAEG-IVTLEATLDA 166



 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 123/258 (47%), Gaps = 40/258 (15%)

Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNFHIPS-SLILEALTTLGCCESFSMERLELLGD 1085
            L+PS++ R+E+ ++A +L   +    R   I   +L+L A++T    E  + ER+E LGD
Sbjct: 857  LIPSILHRIETHLVARELSAGL---LRPLAISDPALVLTAISTGSAAEPTNYERIEFLGD 913

Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV 1145
            S+LK++ + ++    P   E  LS ++   V NSTL K      L  +I    F  ++W 
Sbjct: 914  SILKFSTTINVAALNPDWPERLLSFKKDGIVANSTLCKAAIKHGLDRFILTKPFTGQKW- 972

Query: 1146 APGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALI 1205
                   RP+                 +  D   V+ +  +   R + +KT+AD  EALI
Sbjct: 973  -------RPI-----------------YVDD---VLHRGDEKSTRRISTKTLADIVEALI 1005

Query: 1206 GAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE----IKDIESKI 1261
            GA  + GGL  AL  M        ++   +DDC  R +L    P   E    ++ +E  +
Sbjct: 1006 GASMIDGGLEKALKCMSIFL--QQIKWRTLDDC--RQALYDAAPPDVELPSTLEPLEQLV 1061

Query: 1262 GYEFTVKFLLQEAITHAS 1279
            G+EF  K LL +++THAS
Sbjct: 1062 GHEFKKKALLVQSMTHAS 1079



 Score = 82.0 bits (201), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 13/211 (6%)

Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
           L  FR GK NLL AT V+EEG+ VP C+ V  FD P  + S+IQ RGRAR   S+ +++ 
Sbjct: 403 LHQFRTGKTNLLIATSVLEEGIDVPACNLVFCFDNPPNLKSFIQRRGRARMRESKLLMLH 462

Query: 527 ERGNLKQRNKLFDIIRSE-RSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDS 585
              ++    K ++ + +E +S  +           ++     K   ++++ TGA +  D+
Sbjct: 463 SSESIP---KEWEAMEAEMKSQYEEQERELERLQDMEDTEESKDMMFVIDRTGAVLDLDN 519

Query: 586 SVNLIHRYCEMLPSDKYYTPKP---IFKYKSAEEAY-ECELTLPSNAPFQTIVGPTSR-- 639
           +   +   C +L   ++   +P   I K  ++E  Y    + LPS  P       + +  
Sbjct: 520 AKQHLDHLCRILSPGEFIDWRPDYIIQKQDTSEAPYLRVTVVLPSYLPSHVRKADSQKAW 579

Query: 640 --NKNLSKQLVCLEACEKLHQVGALNDHLLP 668
              +N +K     +A   L++ G +ND+LLP
Sbjct: 580 KSERNATKD-AAFQAYVDLYKAGLVNDNLLP 609


>gi|429191672|ref|YP_007177350.1| ERCC4-like helicase [Natronobacterium gregoryi SP2]
 gi|448325183|ref|ZP_21514580.1| Hef nuclease [Natronobacterium gregoryi SP2]
 gi|429135890|gb|AFZ72901.1| ERCC4-like helicase [Natronobacterium gregoryi SP2]
 gi|445616172|gb|ELY69802.1| Hef nuclease [Natronobacterium gregoryi SP2]
          Length = 803

 Score =  102 bits (255), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 128/518 (24%), Positives = 215/518 (41%), Gaps = 97/518 (18%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQLK+   A   +T+  L TG GKT +++++    A+ ++  G K L+  LAPT  LV
Sbjct: 24  RLYQLKLAGTAADHHTLVCLPTGLGKTTVSLLVT---ARRLEEVGGKSLM--LAPTKPLV 78

Query: 107 HQQYDVIRVHTDFEVEEYYGAKG--VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            Q  D  R       E+     G    E  +  W++      V++ TPQ++ + L  + +
Sbjct: 79  QQHADFYREALQIPDEQIVVFTGDVSPEDRAATWEEAT----VVMATPQVIENDLVGSRV 134

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEG 224
           SL  V     DECH ATG++ Y  I  E YH    +P V GM+ASP   +     + CE 
Sbjct: 135 SLADVTHCTFDECHRATGDYAYNYIA-ERYHADAKQPLVTGMSASPGGDEETILEV-CEN 192

Query: 225 -QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDA 283
             I E+E      V T ED                  D S+F         +V W + D 
Sbjct: 193 LGIEEVE------VMTEEDA-----------------DVSEFTHD-----TDVEWERIDL 224

Query: 284 SLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYE---------AVK 334
               L+                +R  L+D     L  L E+G+  + +         A++
Sbjct: 225 PEEVLE----------------IRDALNDVIKDRLEKLKEMGIADSTQPDQSQKELNAMR 268

Query: 335 ICLEKVLKAQEECEIYRQSSLQCKYF-LEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393
             L+K++   ++ E +   S+  +   L + + ++ +    A + + D   + +++    
Sbjct: 269 AELQKLIN-NDQSEGFEGMSIHAEVMKLRQAVTLVETQSVEAVRRYFDRQRNQARSSGAS 327

Query: 394 YISTKL-------------HELLQLFLSFGKSTQVLC-----------IIFVERIIAAKV 429
             S +L              E  QL   + K+  +L            I+F E    A+ 
Sbjct: 328 KASQRLVSDPRVREAMRKGEEFDQLHPKYRKTRMILAETLGLEDGERVIVFTESRDTAEA 387

Query: 430 VERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMH 489
           +  F+ +  F     V    G     D +T   Q+EVL+ FR G+  +L +T V EEG+ 
Sbjct: 388 LTDFLSE-SFEAKRFVGQ--GDREGSDGMTQNEQQEVLDDFRAGEFEVLISTSVAEEGLD 444

Query: 490 VPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILML 526
           VP    V+ ++   T    IQ +GR  RQ   + ++++
Sbjct: 445 VPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRVVVLM 482


>gi|336476206|ref|YP_004615347.1| helicase domain-containing protein [Methanosalsum zhilinae DSM
           4017]
 gi|335929587|gb|AEH60128.1| helicase domain protein [Methanosalsum zhilinae DSM 4017]
          Length = 776

 Score =  102 bits (255), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 127/518 (24%), Positives = 232/518 (44%), Gaps = 88/518 (16%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQL +   A ++ ++ VL TG GKT++A+M++  +A+  K  G    I+ L+PT  LV
Sbjct: 22  RLYQLNLAGEALKKPSLVVLPTGLGKTIVALMVM--VARLEKYGG---RILLLSPTKPLV 76

Query: 107 HQQYDVIRVHTDFEVEE-----YYG----AKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
            Q    +R     E+EE     + G    AK  + W         N+  +++ TPQ++ +
Sbjct: 77  EQHSLFLR--NVLEIEESSILTFTGSLSPAKRAELW---------NQGQIIISTPQVIEN 125

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVS 217
            L    + L  V  I  DE H A GN+ Y+ I ++++   +N P +  +TASP       
Sbjct: 126 DLIARRIDLGDVSHITFDEAHRAVGNYAYSFISEKYFQSCEN-PHILAITASP------G 178

Query: 218 SAMDCEGQISE---LESTL-----DSQVFTIEDKTEME---VFVPSAKESCRFYDQSKFC 266
           S+ +   Q+ E   +ES +     DS V     K ++E   V +P         D+ K  
Sbjct: 179 SSSEKVNQVCESLRIESVIVKTEQDSDVVPYIHKKDIEWVHVNLP---------DELKKI 229

Query: 267 GSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGL 326
              L+  ++  + K   +   +   +     ++    K L+ QL  Y    +Y    L L
Sbjct: 230 KELLERIMDDRFKKLAEAGYPVSNPRKTSKTEILGMQKRLQSQLRGYPDPQVYT--GLSL 287

Query: 327 ICAYEAVKICLEKVLKAQEECEIYRQSSLQC-KYFLEEVLHVIGS------ALPLADKIF 379
           I           +++K     E+     ++    +++ + +  GS      +  L + ++
Sbjct: 288 IA----------EIMKVNHAIEVAETQGIESLTRYIQRLENEAGSKGGSKASRRLGEDLY 337

Query: 380 LDFGFDYSKAVD-----LGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434
           +       K +D     L Y+   + + LQ      K+ +   I+F      A +V   +
Sbjct: 338 MRQVVHRLKGLDLEHPKLNYVKNIVQDQLQ------KNPESRVIVFTNYRDTADMVTCML 391

Query: 435 KKVPFLTHLTVAYLTGSTTSVD-ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
            +V  ++   V ++  S+   D  LT K Q E++E F+ G  N+L AT V EEG+ +P  
Sbjct: 392 SEVEGIS--PVRFVGQSSKYKDKGLTQKQQVEIIEKFKSGDFNVLVATSVAEEGLDIPAT 449

Query: 494 SYVIRFD-LPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
             V+ ++ +P  + S IQ +GR  R+H  + ++++ RG
Sbjct: 450 DLVLFYEPVPSEIRS-IQRKGRTGRKHRGRVVVLVTRG 486


>gi|268567267|ref|XP_002639934.1| C. briggsae CBR-DRH-3 protein [Caenorhabditis briggsae]
          Length = 846

 Score =  102 bits (255), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 127/540 (23%), Positives = 227/540 (42%), Gaps = 75/540 (13%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ ++ + A + +N + V  TGAGKT +A+    +  +   +      ++ L P + L
Sbjct: 76  RTYQEELVQPALEGKNCVVVAPTGAGKTEVAIYAALNHIKERHNQEKAARVVLLVPKIPL 135

Query: 106 VHQQYDVIRVHTDFEVEEYY--GAKGVDEWDS-QCWQKEINKNDVLVMTPQILLDAL--- 159
           V QQ +       +   +Y+  G  G ++ D+ +  + ++ +  ++VMTPQIL++ L   
Sbjct: 136 VSQQKERF---LKYCAGQYHVCGIHGSEKSDTGEGRRDDVLQAHIVVMTPQILINMLQSV 192

Query: 160 -RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGV-- 216
            R   L +     +V DE H  +GNHPY  I +        KP++ G+TAS  V   V  
Sbjct: 193 RRNERLYVSDFSMMVFDEVHKTSGNHPYVLINRLVQEWDYEKPQIIGLTASLNVNAKVHT 252

Query: 217 -SSAM-------------DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ 262
            +SAM              C   I+   S  +      +   E+EV  P           
Sbjct: 253 ETSAMLGNIYTMLALLNTPCLSSITHQASIDELNEHVTKPDDEVEVLPPGPN-------- 304

Query: 263 SKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCY--KDMDDKHKTLRKQLSDYHAKILYC 320
                + ++  L ++  K    L KL  S+ NC+  K      K   K    Y A +   
Sbjct: 305 --VLRAHIETYLHINHGKLCGELEKLSKSRHNCFPAKTYHMFRKANTKDYEYYDALLTNI 362

Query: 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQS--------SLQCKYFLEEVLHVIGSAL 372
           + +L  +   E  K+C +K  K     ++Y ++        ++    ++ + + ++ +  
Sbjct: 363 IQDLNKLNTPE--KMCAQKWTKY---IKVYVEARSIVDVMPAMTAFEYMRDAIRILDNEH 417

Query: 373 PLADKIFLDFGFDY--------SKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI 424
            L    F DF  D         S+ V+   +      L+  F +   S   + I  V+R 
Sbjct: 418 TLTQ--FSDFFTDRIYEPLRKNSENVEPPIVQKLKDTLITQFATIPDSR--VIIFVVQRS 473

Query: 425 IAAKVVERFVKKVPFLTHLT---------VAYLTGSTTS-VDALTPKVQKEVLESFRGGK 474
            A +V +   +    +  L+         + Y+ G+        +P  QK VL  F  GK
Sbjct: 474 TAQRVSDFLNRSEEVMKQLSSSGDKREDMIGYVLGTNKQGAVQQSPDEQKTVLGRFNTGK 533

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPK-TVSSYIQSRGRARQHNSQFILMLERGNLKQ 533
           + ++ AT V+EEG+ V  C+ +I+++    +    IQ RGRAR  NS+ +L+     +K+
Sbjct: 534 LKVIVATSVVEEGLDVAACNLIIKYNCSSGSAIQLIQQRGRARAKNSRSVLLAVHSKVKE 593


>gi|296923414|emb|CAZ27718.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Oncorhynchus mykiss]
          Length = 677

 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 137/542 (25%), Positives = 224/542 (41%), Gaps = 103/542 (19%)

Query: 49  YQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
           YQ +V + A R  N I  L TG GKT  AV + K   + +++N   K+ + L   VHLV 
Sbjct: 8   YQEEVVQRALRGENIIIWLPTGGGKTRAAVYVAK---KHLENNPGAKVAV-LVNKVHLVD 63

Query: 108 QQYDVIRVHTDFEVEEYYGAK-GVDEWDSQCWQK-----EINKNDVLVMTPQILLDALRK 161
           Q Y+        E   Y G+   +      C QK     E+   D+++ T QIL +AL  
Sbjct: 64  QHYNN-------EFNPYLGSDYSLVSISGDCDQKDFFGCEVKNFDLVICTAQILENALTN 116

Query: 162 A----FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH---KSDNK-PKVFGMTASPVVR 213
                 + L     ++IDECHH      Y KIM  +     K + + P++ G+TASP   
Sbjct: 117 QEEGKHVELSQFTLLIIDECHHTHKEGVYNKIMARYVAQKLKGERRLPQILGLTASP--- 173

Query: 214 KGVSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDL 270
            G   A   +G +    ++ + LDS + +                       SK    +L
Sbjct: 174 -GTGGAKSIKGAVEHVLQICANLDSVIVS-----------------------SKVYAPEL 209

Query: 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHA-KILYCLDELGLICA 329
           K K+     +FD    + Q           D  K + + + D+ A    + + E G    
Sbjct: 210 KKKVPRPRKRFDIVDRRPQDP-------FGDHLKFMMQFIHDFMALGPEFPVREFG-TQE 261

Query: 330 YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKI----------- 378
           YEA  + LEK     +   +  Q +L  + + + +L  I   + + D             
Sbjct: 262 YEADVVILEKK-GVTDRNRLLAQCALHLRQYNDALL--INDTVRMVDAFRVLESYYSTKS 318

Query: 379 --------FLDFGFDYSKAVDLGYIST----------KLHE-LLQLFLSFGKSTQVLCII 419
                   F   G      V+L  +S           KL   LL+ F+  G S  +L   
Sbjct: 319 STAMDGTDFFLLGLYQENEVELRKLSGDARFENPKMGKLQNTLLEQFVQGGHSRGIL--- 375

Query: 420 FVERIIAAKVVERFVKKVPFLTH--LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
           F +   +   +  +V   P L    +  A LTG+   ++ +T   QK+ + +FR G +NL
Sbjct: 376 FSKTRKSICCLYDWVSNNPALQRAGIRAAILTGAGNGINYMTQNEQKDTIRNFRLGSLNL 435

Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           L +T V EEG+ +P C+ V+R+ L     +  Q+ GRAR  +S + ++ + G  + R +L
Sbjct: 436 LISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARASDSVYSVVAQAGGREVRREL 495

Query: 538 FD 539
            +
Sbjct: 496 LN 497


>gi|147844517|emb|CAN79991.1| hypothetical protein VITISV_002668 [Vitis vinifera]
          Length = 435

 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 65/96 (67%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQL V E AK+RNTIA LETGAGKT+IAV+LI+ +   ++    K L +FL P V LV
Sbjct: 313 RQYQLDVLEQAKKRNTIAFLETGAGKTLIAVLLIRSVFNDLQGQNKKLLAVFLVPKVPLV 372

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEI 142
           +QQ +VIR  T ++V  Y G  G D WD++ WQ+E 
Sbjct: 373 YQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREF 408


>gi|213513760|ref|NP_001133649.1| probable ATP-dependent RNA helicase DHX58 [Salmo salar]
 gi|209154816|gb|ACI33640.1| Probable ATP-dependent RNA helicase DHX58 [Salmo salar]
          Length = 678

 Score =  102 bits (254), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 133/540 (24%), Positives = 222/540 (41%), Gaps = 99/540 (18%)

Query: 49  YQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
           YQ +V + A R  N I  L TG GKT  AV + K   + +++N   K+ + L   VHLV 
Sbjct: 9   YQEEVVQRALRGENVIIWLPTGGGKTRAAVYVAK---KHLENNPGAKVAV-LVNKVHLVD 64

Query: 108 QQYDVIRVHTDFEVEEYYGAKGVD----EWDSQCWQKE-----INKNDVLVMTPQILLDA 158
           Q Y          + E+    G+D         C QK+     +  +D+++ T QIL +A
Sbjct: 65  QLY----------INEFKPFLGLDYSLVSISGDCDQKDFFGCNVKNSDLVICTAQILENA 114

Query: 159 LRKA----FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH---KSDNK-PKVFGMTASP 210
           L        + L     ++IDECHH      Y KIM  +     K + + P++ G+TASP
Sbjct: 115 LTNQEEGKHVELSQFTLLIIDECHHTHKEGVYNKIMGRYVAQKLKGERRLPQILGLTASP 174

Query: 211 VVRKGVSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG 267
               G   A   +G +    ++ + LDS + +                       SK   
Sbjct: 175 ----GTGGAKSIKGAVEHVLQICANLDSVIVS-----------------------SKVYA 207

Query: 268 SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHA-KILYCLDELGL 326
            +LK K+     +FD    + Q           D  K + + + D+ A    +   E G 
Sbjct: 208 PELKKKVPRPRKRFDIVDKRPQDP-------FGDHLKFMMQFIHDFMALGPDFPFREFG- 259

Query: 327 ICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL-----------------HVIG 369
              YEA  + LEK     +   +  Q +L  + + + +L                 +   
Sbjct: 260 TQEYEADVVILEKK-GVTDRNRLLAQCALHLRQYNDALLINDTVRMVDAFRVLESYYSTK 318

Query: 370 SALPLADKIFLDFGFDYSKAVDLGYIST-------KLHELLQLFL-SFGKSTQVLCIIFV 421
           S+  +    F   G      V+L  +S        K+ +L    L  F +      I+F 
Sbjct: 319 SSTAMDGTDFFLLGLYQENEVELRKLSGDARFENPKMGKLQNTLLEQFDQGKPSRGILFS 378

Query: 422 ERIIAAKVVERFVKKVPFLTH--LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLF 479
           +   +   +  +V   P L    +  A LTG+   ++ +T   QKE + +FR G +NLL 
Sbjct: 379 KTRKSTHCLYDWVSNNPALQRAGIRAAILTGAGNGINYMTQNEQKETIRTFRRGSLNLLI 438

Query: 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           +T V EEG+ +P C+ V+R+ L     +  Q+ GRAR  +S + ++ + G  + R +L +
Sbjct: 439 STSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARASDSVYSVVAQAGGREVRRELLN 498


>gi|197098648|ref|NP_001124599.1| probable ATP-dependent RNA helicase DHX58 [Pongo abelii]
 gi|55725102|emb|CAH89418.1| hypothetical protein [Pongo abelii]
          Length = 678

 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 136/526 (25%), Positives = 233/526 (44%), Gaps = 66/526 (12%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +  +G K  ++ L   VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGGK--VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +  R   D  + +    G  G        +      +D+L+ T ++L  AL    
Sbjct: 60  VTQHGEEFRRMLDGRWTMTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTSPE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKG 215
            +  L L     IV+DECHH   +  Y  IM ++      ++   P+V G+TASP    G
Sbjct: 116 EEEHLELTAFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A    G I+   +L + LD+    +  +         +++ C+ Y+       D  G
Sbjct: 172 TGGASKLNGAINHVLQLCANLDTWCI-MSPQNYCPQLQEHSQQPCKQYNLCHRRSQDPFG 230

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            L          L KL   Q++ + +M +  +    Q+  Y  +++  L E   +   + 
Sbjct: 231 DL----------LKKLM-DQIHDHLEMPELSRNFGTQM--YEQQVVK-LSEAAALAGLQE 276

Query: 333 VKICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            ++    + +  +   I+         ++LQ  Y  E   HV  + +  A +  L   FD
Sbjct: 277 QRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE---HVTKTQILCAKRRLLAL-FD 332

Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKV 437
             K V L +++T      KL E+L+  L   F  S     IIF     +A  +  ++++ 
Sbjct: 333 DHKNV-LAHLATHGPENPKL-EMLEKILQRQFRSSDSPRGIIFTRTRQSAHSLLLWLQQQ 390

Query: 438 PFLTHLTV-AYL---TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           P L  + + A L    G+++    +T + Q+EV+  FR G +NLL AT V EEG+ +P+C
Sbjct: 391 PGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIRKFRDGTLNLLVATSVAEEGLDIPHC 450

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           + V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L +
Sbjct: 451 NVVVRYGLLTNEISMVQARGRARADQSVYSFVATEGSRELKRELIN 496


>gi|383412907|gb|AFH29667.1| putative ATP-dependent RNA helicase DHX58 [Macaca mulatta]
          Length = 678

 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 136/526 (25%), Positives = 232/526 (44%), Gaps = 66/526 (12%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +  +G K  ++ L   VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +  R   D  + V    G  G        +      +D+L+ T ++L  AL    
Sbjct: 60  VTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTSPE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKG 215
            +  + L     IV+DECHH   +  Y  IM  +      ++   P+V G+TASP    G
Sbjct: 116 EEEHVELTAFSLIVVDECHHTHKDTVYNVIMSRYLELKLQRARPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I    +L + LD+    +  +         +++ C+ Y+       D  G
Sbjct: 172 TGGASKLDGAIDHALQLCANLDTWCI-MSPQNYRPRLQEHSQQPCKQYNLCHRRSQDPFG 230

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            L          L KL   Q++ + +M +  +    Q+  Y  +++  L E   +   + 
Sbjct: 231 DL----------LKKLM-DQVHDHLEMPELSRNFGTQM--YEQQVVK-LSEAAALAGLQE 276

Query: 333 VKICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            ++    + +  +   I+         ++LQ  Y  E   HV  + +  A++  L   FD
Sbjct: 277 QRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE---HVTKTQILCAERRLLAL-FD 332

Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKV 437
             K V L +++T      KL E+L+  L   F  S     IIF     +A  +  ++++ 
Sbjct: 333 GHKNV-LAHLATHGPENPKL-EMLEKILQRQFRSSDSPRGIIFTRTRQSAHSLLLWLQQQ 390

Query: 438 PFLTHLTV-AYL---TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           P L  + + A L    G+++    +T + Q+EV+  FR G +NLL AT V EEG+ +P C
Sbjct: 391 PGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQC 450

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           + V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L +
Sbjct: 451 NVVVRYGLLTNEISMVQARGRARADQSVYSFVATEGSRELKRELIN 496


>gi|224576607|gb|ACN56977.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576611|gb|ACN56979.1| At1g01040-like protein [Capsella grandiflora]
          Length = 180

 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 96/196 (48%), Gaps = 32/196 (16%)

Query: 1090 YAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQ 1149
            + VS  LFL YP+KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG 
Sbjct: 1    WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG- 59

Query: 1150 LSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM----------------GHRWMG 1193
                 VP     DT E      FF ++ K +  +  D                  +R + 
Sbjct: 60   -----VPPVFDEDTKE----SSFFDEEQKPLSKENSDXFEDGEMEDGELEGDLSSYRVLS 110

Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1253
            SKT+AD  EALIG YYV GG IAA ++M W+GI  + +   V+  +  A++   V     
Sbjct: 111  SKTLADVVEALIGVYYVEGGKIAANHLMTWIGIHVEDDPEEVEGTVKPANVPESV----- 165

Query: 1254 IKDIESKIGYEFTVKF 1269
            +K I+  +G E  +KF
Sbjct: 166  LKSIDF-VGLERALKF 180


>gi|379055833|emb|CCD32420.1| dicer-1b, partial [Acyrthosiphon svalbardicum]
 gi|379055835|emb|CCD32421.1| dicer-1b, partial [Acyrthosiphon kondoi]
          Length = 272

 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 89/175 (50%), Gaps = 22/175 (12%)

Query: 1054 NFHI-PS-SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            N+H  PS S++L+ALTT    +  ++ERLE +GDS LKYAV+ +L+ T+   HEG LS  
Sbjct: 57   NYHPGPSPSILLQALTTSNANDGINLERLETIGDSFLKYAVTAYLYCTHNNVHEGILSDL 116

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGK 1171
            RS  V N  L++LG  +     +  + F+PR    P        PC      LE      
Sbjct: 117  RSNHVSNLNLYRLGKLKMFGERMISTKFEPRSNWLP--------PCFIEPHKLE------ 162

Query: 1172 FFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1226
                  K V+     +    +  K+IADC EALIGAY +  G   AL  M WLGI
Sbjct: 163  ------KAVINSNISITQHIINDKSIADCVEALIGAYLISCGNRGALLFMSWLGI 211


>gi|109115463|ref|XP_001108799.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like isoform 1
           [Macaca mulatta]
 gi|355568695|gb|EHH24976.1| Putative ATP-dependent RNA helicase DHX58 [Macaca mulatta]
          Length = 678

 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 136/526 (25%), Positives = 232/526 (44%), Gaps = 66/526 (12%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +  +G K  ++ L   VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +  R   D  + V    G  G        +      +D+L+ T ++L  AL    
Sbjct: 60  VTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTSPE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKG 215
            +  + L     IV+DECHH   +  Y  IM  +      ++   P+V G+TASP    G
Sbjct: 116 EEEHVELTAFSLIVVDECHHTHKDTVYNVIMSRYLELKLQRARPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I    +L + LD+    +  +         +++ C+ Y+       D  G
Sbjct: 172 TGGASKLDGAIDHVLQLCANLDTWCI-MSPQNYRPRLQEHSQQPCKQYNLCHRRSQDPFG 230

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            L          L KL   Q++ + +M +  +    Q+  Y  +++  L E   +   + 
Sbjct: 231 DL----------LKKLM-DQVHDHLEMPELSRNFGTQM--YEQQVVK-LSEAAALAGLQE 276

Query: 333 VKICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            ++    + +  +   I+         ++LQ  Y  E   HV  + +  A++  L   FD
Sbjct: 277 QRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE---HVTKTQILCAERRLLAL-FD 332

Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKV 437
             K V L +++T      KL E+L+  L   F  S     IIF     +A  +  ++++ 
Sbjct: 333 GHKNV-LAHLATHGPENPKL-EMLEKILQRQFRSSDSPRGIIFTRTRQSAHSLLLWLQQQ 390

Query: 438 PFLTHLTV-AYL---TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           P L  + + A L    G+++    +T + Q+EV+  FR G +NLL AT V EEG+ +P C
Sbjct: 391 PGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQC 450

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           + V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L +
Sbjct: 451 NVVVRYGLLTNEISMVQARGRARADQSVYSFVATEGSRELKRELIN 496


>gi|308469221|ref|XP_003096849.1| hypothetical protein CRE_24668 [Caenorhabditis remanei]
 gi|308241264|gb|EFO85216.1| hypothetical protein CRE_24668 [Caenorhabditis remanei]
          Length = 1030

 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 138/574 (24%), Positives = 243/574 (42%), Gaps = 104/574 (18%)

Query: 29  DHAVDGPSSSTNSINFIPRIYQLKVFEVAKRR-NTIAVLETGAGKTMIAVMLIKD--IAQ 85
           + +V+    + NSIN   R YQ+++  +A +  NTI    TG GKT++A  ++K+    +
Sbjct: 283 NSSVNPSLQNENSINL--RNYQVELCRLAVQGINTIVTAPTGTGKTVVAANIVKNHFEVR 340

Query: 86  AIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN 145
           A +   FK L  FLAP   ++ QQ D +    +  +   Y  K     D+   ++ +  N
Sbjct: 341 AREEKTFKAL--FLAPNTTILQQQADRL----NHFLAHSYDLKICQGSDNSPTRQAVLSN 394

Query: 146 DVLVMTPQIL----------LDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195
           D++V TPQ++          L         L     I+ DECH    N PY  IM+E YH
Sbjct: 395 DIIVATPQMIVNLCNEHEDELSEFSNEKFYLSTFSIILFDECHSTVNNSPYANIMRE-YH 453

Query: 196 KSDNK---------PKVFGMTASPVVRKGVSSAMDCEGQISELEST---LDSQVFTI--E 241
              N          P++ G+TAS     G   A + E  I  + S    LD +  +   E
Sbjct: 454 TLKNMGTMPDNHELPQIVGLTASL----GTGDANNVEKAIQHIASMCALLDVEKLSTVCE 509

Query: 242 DKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL-EVSWSKFDASLSKLQGSQLNC--YKD 298
              E+++F P   E    ++++K   S   G+  E+     D     L+ + ++   Y  
Sbjct: 510 YADELQMFSPIIPEKIYSFEKNKDGSS---GRFAELVRQMMDNITMMLETAFVSREEYSK 566

Query: 299 MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC- 357
           + +  KT  K    Y    L CL        ++  +  + + L   + C  YR  S    
Sbjct: 567 VTNGEKTPAKDHVAY-LNWLSCLKRSVAEQNFQGNRNNINEALSMLDIC--YRSQSFNSN 623

Query: 358 -------KYF--------------LEEVLH-------VIGSALPLADKIFLDFGFDYSKA 389
                  KYF              ++EVLH        +GS +P+ + + L         
Sbjct: 624 FNPRTAFKYFDEKVKEQERFLTERMKEVLHQYYPRLEQLGSDVPIENPMIL--------- 674

Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL--THLTVAY 447
                   K+ +LL       ++++   IIFV+    A  ++  +     L   ++   Y
Sbjct: 675 --------KIEDLLTENHRENQNSR--AIIFVQTRYDAITLKNILCDNENLLSQNIRTDY 724

Query: 448 LTGSTTSVD-----ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
           + G   + +     A++   Q E L+ F  G + +L +T V EEG+ +  C+ VI+++  
Sbjct: 725 ILGLNKTTEGSEDSAISRSDQVEKLKQFASGGIRVLVSTSVAEEGLDISECNLVIKYNYA 784

Query: 503 KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
             V +++Q RGR R ++S+ IL+    +L+++ +
Sbjct: 785 TNVIAHVQRRGRGRANDSRSILITNDPSLEKQER 818


>gi|170091728|ref|XP_001877086.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648579|gb|EDR12822.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1358

 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 135/325 (41%), Gaps = 54/325 (16%)

Query: 1006 HMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEA 1065
            ++ PEL  +  +P S +++  LLPS+M+R++ L++  +L      H+    I   L+  +
Sbjct: 782  YLIPELCAKFTLPASTLRTALLLPSIMRRIDDLLIVKELNARFFDHA----IREDLLHVS 837

Query: 1066 LTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG 1125
            L        ++ ERLELLGD+ LKY  + ++F+  P ++EG L   R   + N +L +  
Sbjct: 838  LCAPSAGLEYNYERLELLGDAFLKYLCTIYVFVAEPTQNEGSLHIARQKLISNKSLLENS 897

Query: 1126 TDRKLQGYIRDSAFDPRRWVAPGQLSLRP---------------VPCECGVDTLEVPLDG 1170
                L  YI+   F  + W  P    L P                P   G +     ++G
Sbjct: 898  NLIGLPVYIQAKPFPAKSW-QPPNFRLTPRTSKMIVDKSDEEAFTPMILGSEMSSDVVEG 956

Query: 1171 KFFTQDTK----------VVVGKPCDMGHR---------------------WMGSKTIAD 1199
             F    T            V+ +  D+  R                     W+G K +AD
Sbjct: 957  AFTRTSTACNPHVSGVDLAVINETSDVNERDPPFYGKKNKKKARQDEQSSQWLGDKAVAD 1016

Query: 1200 CAEALIGAYYVGGGLIAALYMMKWLGI---DADLEVSLVDDCITRASLRSYVPRINEIKD 1256
              EA+IGA Y+ GG   AL + K L I   + +       +  T     S   R      
Sbjct: 1017 VVEAIIGAAYISGGRETALQVTKALAIPISNINRWSDFGRNVSTPPPDASAKLRPESTSA 1076

Query: 1257 IESKIGYEFTVKFLLQEAITHASVQ 1281
            IE  IG+ F    LL +A+TH+S+Q
Sbjct: 1077 IERIIGHNFQRPHLLAQALTHSSMQ 1101



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 115/520 (22%), Positives = 209/520 (40%), Gaps = 82/520 (15%)

Query: 185 PYTKIMKEFYHK--SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIED 242
           P  ++M EFY    S  +P++F + A P       + +  + ++ +LE  LD++VF + +
Sbjct: 25  PIVRVMGEFYQTTVSSFRPRIFALAALP-------NDLHFDSEMLKLELILDAKVFGMAE 77

Query: 243 KTEMEVF-VPS-AKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMD 300
               ++  +P   KE    Y+ +        G  E   SK           QL+ +   +
Sbjct: 78  TKRSDILSLPDRPKELVIMYNTAT-------GIAETRLSK-----------QLHQFDPDE 119

Query: 301 DKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYF 360
               +  +       ++  C  +L    A + ++  +     + ++ E  + S L+ K  
Sbjct: 120 SIFPSYFRASRHALLEVGPCAQDLVWRRALKEIETLIPSWYNSMDDDEETQSSILRAKQG 179

Query: 361 LEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIF 420
           + + L      +P  D          SK  ++ +   +L ++L    S+GK  +   IIF
Sbjct: 180 IRDTLKNWPFTMPNLDP--------SSKGFNVTHKFRRLVDILMTCGSYGKGFR--GIIF 229

Query: 421 VE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLF 479
           V+ R IA  +V+ F      L  +    L G + S      K  +E+   F  G+ NLL 
Sbjct: 230 VQKRAIALVLVDLFRNLYHELRFIRPCALFGHSFS----DFKRHQEIFHGFVTGEYNLLV 285

Query: 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           AT   E+ + +P  S VIR+DL  + +S+  ++ R     S  I M+ERGN    + L  
Sbjct: 286 ATKSTED-LEIPRASMVIRYDLFDSQTSHAYAKARTCGRESHLIHMVERGNDMHHHILSH 344

Query: 540 IIRSERSVTDTALSRDPEACFLKACTYV----------------------KTKSYIVE-S 576
           I+ +   +      R  EA +  A  +                        T+ YI + +
Sbjct: 345 IMNAGADIL-----RWTEALYEMANNFAPVPPRDIRESINPYHSDSDDEDSTEEYITDPT 399

Query: 577 TGASVTTDSSVNLIHRYCEMLPSDKYY--TPKPIFKYKSAEEAYE------CELTLPSNA 628
           T   +    +  +I+R+   L S  +     K +F  K     +       C +TLP   
Sbjct: 400 TSGRIYIQDATTVIYRFTAGLKSTGFRLEDDKSLFDLKEIHSGFGTTNTLVCSVTLPGTV 459

Query: 629 PFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
               I G  S +K+ +++  C EAC +L   G L+  ++P
Sbjct: 460 -IDNISGSPSLSKSQARRSACFEACRELSNAGLLDYRMVP 498


>gi|367020256|ref|XP_003659413.1| hypothetical protein MYCTH_2296412 [Myceliophthora thermophila ATCC
           42464]
 gi|347006680|gb|AEO54168.1| hypothetical protein MYCTH_2296412 [Myceliophthora thermophila ATCC
           42464]
          Length = 1105

 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 126/526 (23%), Positives = 214/526 (40%), Gaps = 70/526 (13%)

Query: 42  INFIP-RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLA 100
           +N  P R YQ  + +     NT+  L TG GKT IA  ++ +  +  K    +  I+F+A
Sbjct: 165 LNLGPIRDYQFSIVKNGLFNNTLVALPTGLGKTFIAATIMLNYFRWTK----RSKIVFVA 220

Query: 101 PTVHLVHQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
           PT  L  QQ         + R        E        EW ++          +  MTPQ
Sbjct: 221 PTKPLASQQVQACLNIAGIPRSQATLLTGETPPVLREGEWQNKR---------LFFMTPQ 271

Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-VV 212
            L++ L K F     +  +VIDE H ATG++ Y K + EF  +     ++  +TA+P   
Sbjct: 272 TLMNDLSKGFADPKSIVLLVIDEAHRATGDYAYVKAV-EFIRRFSKSIRILALTATPGST 330

Query: 213 RKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
            +GV   +D  G IS +E          E+  ++  +V S     R  D   F  SD   
Sbjct: 331 VEGVQEIIDNLG-ISHVE-------IRTEESIDIRRYVHS-----RSIDTVTFDPSDEMH 377

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKT---LRKQLSDYHA-------------- 315
           ++   +SK    L     SQ N Y   D    T   L K  +++ A              
Sbjct: 378 QVRDLFSKALKPLVDKLSSQ-NIYYGRDPMSLTTYGLLKSRNEWMAGPGRHVNQGTKFMM 436

Query: 316 ----KILYCLDELGLICAYEAVKICLEKV--LKAQEECEIYRQSSLQCKYFLEEVLHVIG 369
                IL  L  L  +  +  +K     +   +A EE +  + S ++ +   +E    + 
Sbjct: 437 VAVFSILQSLAHLIKLLNFHGIKPFYNGLAEFRASEEAKPGQGSKIKRQLLADENFQKMM 496

Query: 370 SALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKV 429
           S   +   + LD   +++    L Y+  +   L+  F+  G+      I+F E   +A+ 
Sbjct: 497 SM--IERWMRLD---EFNGHPKLTYLCER---LVNHFMDAGEGANTRAIVFSEYRDSAEE 548

Query: 430 VERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMH 489
           + R +   P L   TV      +   + +  K Q E +E F+ G  N+L AT + EEG+ 
Sbjct: 549 IVRLLNTQPLL-RATVFVGQADSKRSEGMKQKQQIETIEKFKKGVFNVLVATSIGEEGLD 607

Query: 490 VPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERGNLKQR 534
           +     ++ +D   +    +Q  GR  R+     +L+L +G  +++
Sbjct: 608 IGQVDLIVCYDASSSPIRMLQRMGRTGRKRAGNIVLLLMKGKEEEK 653


>gi|332029751|gb|EGI69620.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
          Length = 1257

 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 129/271 (47%), Gaps = 45/271 (16%)

Query: 1058 PSSL-ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1116
            P+S+ I+ ALTT    + F++ERLE LGDS LK+ VS  L+  +P  +EGQL+A +   +
Sbjct: 775  PNSIEIVHALTTKLGSDMFNLERLETLGDSYLKFIVSLFLYHKFPTFNEGQLTALKGKMI 834

Query: 1117 CNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVP--------- 1167
             N  L+  G  + + G I++ AF P     P   S+     +  +D L  P         
Sbjct: 835  GNRNLYYCGNKKGIPGRIKNDAFVPMSNFIPPAYSVYHPLQKILMDELVAPNVLYEFLIP 894

Query: 1168 ----LDGKFFTQDTKVVVGKPCD--------------MGHRWMGSKTIADCAEALIGAYY 1209
                  G + ++DT  ++ +                 +G + +  KT+AD  EALIG Y 
Sbjct: 895  NMERFTG-YISEDTLNMMKQTVSSWDKRDKQTGVEHYLGVQILSDKTVADSVEALIGVYL 953

Query: 1210 VGGGLIAALYMMKWLGIDADLEVSLVDDCITRASL------RSYVPRINEIKDIESKIGY 1263
                +  A  ++KW GI  D+++ ++   I++  +        Y+P  +    +ESKIGY
Sbjct: 954  KNNHIKGAAKLLKWFGILPDVKIDMLLGSISQNPVIGVGDPNYYMPWADT---LESKIGY 1010

Query: 1264 EFTVKFLLQEAITHAS-----VQEFYCYQNL 1289
            +F  +  L +A TH S     + E  CYQ L
Sbjct: 1011 KFKNRAFLLQAFTHPSYTANGITE--CYQRL 1039



 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 115/214 (53%), Gaps = 12/214 (5%)

Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
           K  KEVL+  + G  N + ATDV++EG+ +P C+ +IR+D+P    +Y+QS+GRAR + S
Sbjct: 123 KWNKEVLQRLKNGSSNCIVATDVVDEGIDIPMCTLIIRYDVPTDFRAYVQSKGRARHNLS 182

Query: 521 QFILMLERGNLKQRNKLFDIIRSERSVTDTALSRD----PEACFLKACTY--VKTKSYIV 574
            +++++E  +     K      +E+ +    + ++    P    +    Y     + Y V
Sbjct: 183 SYLILVENDDEDFLKKYHQYKDTEKKLKRILVGKNERPLPTQDDIVNGLYSDFDIEPYTV 242

Query: 575 ---ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKY--KSAEEAYECELTLPSNAP 629
              +   + +T  ++++LI+ YC  L + K+    PI+K     ++  Y   L LP+ +P
Sbjct: 243 KCDDVVKSRLTEFTAIDLINMYCAALLTSKFVYLVPIWKLDKDDSKNMYRISLKLPNLSP 302

Query: 630 FQTIV-GPTSRNKNLSKQLVCLEACEKLHQVGAL 662
            + ++ G   R+ + +K+ V ++ C +LH++GAL
Sbjct: 303 LKDVIYGDFMRSIDGAKRSVAMKTCIQLHKLGAL 336



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 63  IAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119
           I  L TGAGKT IAVML+K +++ ++     G K+  IF+  TV LV QQ   I+ HTD 
Sbjct: 2   ILYLPTGAGKTYIAVMLLKHLSRDVRKPYQEGGKR-SIFVVNTVALVEQQSTYIKRHTDL 60

Query: 120 EVEEYYGAKGVDEW 133
             + Y G   VD W
Sbjct: 61  RCKGYSGDMMVDFW 74



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 48/202 (23%)

Query: 1228 ADLEVSLVDD----CIT-----RASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHA 1278
             DL  +LV++    C++       +L +Y P+++EI  I+  + ++    +++ + + + 
Sbjct: 1068 TDLRSALVNNITFACLSVRHGLHTALLAYAPKLHEI--IDCFVRFQEERDYVVNDELLYV 1125

Query: 1279 SVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIV 1338
             ++E  C                  ITEYV                  PK LGDL ES++
Sbjct: 1126 LIEEDEC-----------------NITEYVD----------------VPKVLGDLFESLI 1152

Query: 1339 GAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCTLKG 1396
            GA+ +D+  NL +VW I    +   +      +P  P+R + E  D    F++       
Sbjct: 1153 GAIYLDSGKNLTKVWEIIYSFMHKEIDEFSRNIPKQPIRVIYENTDICPKFLEATLIKGT 1212

Query: 1397 EMVHAELRLQL--KDVLLVGEG 1416
             M+   L++ +  K+ L  G G
Sbjct: 1213 GMIMVPLKITIAGKEKLFHGFG 1234



 Score = 45.8 bits (107), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 24/181 (13%)

Query: 920  IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL 979
            +Y +  + ++ + ES F    ++D  T+ +Y+ EK+G+++ +  Q +L +K    P  + 
Sbjct: 512  VYIVTRVCDDLTPESYF---PNEDFDTYTHYYKEKHGLIIENLQQSMLEVK----PIPIK 564

Query: 980  VNFNDGGGSGKGSKSGMNTKKP--QMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLES 1037
            +N+       +G      T      +  H+ PEL  +++ P         LPS++ R+  
Sbjct: 565  INYIKPRKLSEGPLKNKKTDDTVEDLQEHLVPELCYKINFPSVYWLKATTLPSILHRICQ 624

Query: 1038 LMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMER---------LELLGDSVL 1088
            +++A  LR  I   ++      +LIL+  ++L   E  S+ER         LEL  DS+ 
Sbjct: 625  ILIAEDLRVTIARETK----LGTLILKESSSLKIEE--SVERSNEEDYTNGLELTDDSIE 678

Query: 1089 K 1089
            K
Sbjct: 679  K 679


>gi|383620096|ref|ZP_09946502.1| Hef nuclease [Halobiforma lacisalsi AJ5]
 gi|448696209|ref|ZP_21697770.1| Hef nuclease [Halobiforma lacisalsi AJ5]
 gi|445783897|gb|EMA34721.1| Hef nuclease [Halobiforma lacisalsi AJ5]
          Length = 828

 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 215/506 (42%), Gaps = 73/506 (14%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQLK+   A   +T+  L TG GKT +++++    A+ +K  G K L+  LAPT  LV
Sbjct: 24  RLYQLKLAGTAADHHTLVCLPTGLGKTTVSLLVT---ARRLKEVGGKSLM--LAPTKPLV 78

Query: 107 HQQYDVIRVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            Q     R      D E+  + G    D+  +  W++      V++ TPQ++ + L  + 
Sbjct: 79  QQHATFYREALQIPDEEIVVFTGDVSPDDR-AATWEEAT----VVMATPQVIENDLVGSR 133

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAM--D 221
           +SL  V     DECH ATG++ Y  I  E YH     P V GM+ASP    G   A+   
Sbjct: 134 ISLADVTHCTFDECHRATGDYAYNYIA-ERYHADATDPLVTGMSASP---GGDEEAILEV 189

Query: 222 CEG-QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280
           CE   I E+E      V T ED                  D S+F       + +V W +
Sbjct: 190 CENLGIEEVE------VMTEEDA-----------------DVSEFT-----HETDVEWER 221

Query: 281 FD---------ASLSKLQGSQLNCYKDMDDKHKTL----RKQLSDYHAKILYCLDELGLI 327
            D          +L+++   +L   K++     T     +K+L+   A++   ++     
Sbjct: 222 IDLPEEVLEIRDALNEVIKERLEKLKELGVASSTQPDQSQKELNAMRAELQKLINN-DQS 280

Query: 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQC--KYFLEEVLHVIGSALPLADKIFLD---F 382
             +E + I  E V+K ++   +    S++   +YF  +      S    A +  +     
Sbjct: 281 EGFEGMSIHAE-VMKLRQAVTLVETQSVEAVRRYFERQRNQAQSSGASKASQRLVSDPRV 339

Query: 383 GFDYSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT 441
                KA D   +  K  +   L   + G       I+F E    A+ +  F+ +  F  
Sbjct: 340 REAMRKAEDFDQLHPKYRKTRMLLAETLGLEDGERVIVFTESRDTAEALTDFLSE-SFEA 398

Query: 442 HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501
              V    G     D +T   Q+EVL+ FR G+  +L +T V EEG+ VP    V+ ++ 
Sbjct: 399 KRFVGQ--GDREGSDGMTQTEQQEVLDEFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEP 456

Query: 502 PKTVSSYIQSRGR-ARQHNSQFILML 526
             T    IQ +GR  RQ   + ++++
Sbjct: 457 VPTAIRSIQRKGRTGRQSEGRVVVLM 482


>gi|403304470|ref|XP_003942819.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 1
           [Saimiri boliviensis boliviensis]
          Length = 678

 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 134/526 (25%), Positives = 229/526 (43%), Gaps = 66/526 (12%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + +   + +  +G K  ++ L   VHL
Sbjct: 4   RPYQREVITPALEGKNIIIWLPTGAGKTRAAAYVARQHLETV--DGAK--VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTDFE-----VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL- 159
           V Q  +      D       +    G +      ++C       +D+L+ T Q+L  AL 
Sbjct: 60  VTQHGEEFSRMLDGRWTMTTLSGDVGPRAGFGHLARC-------HDLLICTAQLLQMALT 112

Query: 160 ---RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVV 212
               +  + L     IV+DECHH   +  Y  IM  +      ++   P+V G+TASP  
Sbjct: 113 SPEEEEHVELTAFSLIVVDECHHTHKDTVYNVIMSRYLELKLQRARPLPQVLGLTASP-- 170

Query: 213 RKGVSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269
             G   A   +G I+   +L + LD+    +  +         +++ C+ YD  +    D
Sbjct: 171 --GTGGASKLDGAINHVLQLCANLDTWCI-MSPQNYFPQLQEHSQQPCKQYDLCQRRSQD 227

Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
             G L          L KL   Q++ + +M +  +   KQ  +     L     L  +  
Sbjct: 228 PFGDL----------LKKLM-DQIHDHLEMPELSRDFGKQTYEQQVVKLSETAALAGLLE 276

Query: 330 YEAVKICLEKVLKAQEECEIYRQ----SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
                + L +   A    +  R     ++LQ  Y  E   H   + +  A++  L    D
Sbjct: 277 QRVYALHLRRYNDALLIHDTVRAVDALAALQSFYQRE---HATKTQILCAERWLLALFND 333

Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKV 437
           +     L +++T      KL E+L+  L   F  S     IIF     +A  +  ++++ 
Sbjct: 334 HKNV--LAHLATHGLENPKL-EMLEKILQKQFRSSDSPRGIIFTRTRQSAHSLLLWLQQQ 390

Query: 438 PFLTHLTV-AYL---TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           P L  + + A L   +G+++    +T K Q+EV+ +FR G +NLL AT V EEG+ +P C
Sbjct: 391 PGLRTVDIRAQLLIGSGNSSQSTHMTQKDQQEVIRNFRSGTLNLLVATSVAEEGLDIPQC 450

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           + V+R+ L     S +Q+RGRAR   S +  +  +G+ + + +L +
Sbjct: 451 NVVVRYGLLTNEISMVQARGRARAGQSVYSFVATKGSRELQRELIN 496


>gi|256087296|ref|XP_002579808.1| dicer-1 [Schistosoma mansoni]
          Length = 2174

 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 137/325 (42%), Gaps = 76/325 (23%)

Query: 1028 LPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESF-SMERLELLGDS 1086
            L S++Q  + + L S  +   +   R +    + IL+ALT + C   F ++ER+E +GDS
Sbjct: 1603 LESLLQETKVIELNSNEKPSNDIRKRAYQPGPTTILQALT-MSCSNDFINLERMETIGDS 1661

Query: 1087 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWV 1145
             LK+ V+ HL+LTYP+ HEG+LS  RS  VCNS L++LG  + LQ  +    F+P   W+
Sbjct: 1662 FLKFVVTVHLYLTYPEAHEGKLSHLRSRIVCNSNLYRLGKAKDLQNRMIGCKFEPHENWI 1721

Query: 1146 APGQLSLRPVPCECGV---------------DTL--EVPLDGKFFTQDTKVVVGKPCDMG 1188
             PG    +       +               DTL  +  L    F  + K+   KP ++ 
Sbjct: 1722 PPGYYVRQDKRLNNEIIKKFESNRNLVIWSTDTLMDDEVLRNIDFIDENKI---KPIEIF 1778

Query: 1189 HRWMGSKTIADC--------------------------------AEALIGAYYVGGGLIA 1216
                G + I  C                                 EALIG Y    G  +
Sbjct: 1779 QFLNGIQMIQKCYMHNICKLFTSLNNQYLITIQQAIPDKSIADCVEALIGCYLTTRGERS 1838

Query: 1217 ALYMMKWLGID-----------ADLEVSL-----VDDCITRASLRS--YVPRINEIKDIE 1258
            AL +M+W GID           A    SL     +D    RA+L     V R +E   +E
Sbjct: 1839 ALRLMQWFGIDCLHKSDNSQPTARAPWSLPKSNYLDTDENRANLNEARLVWRFDE---LE 1895

Query: 1259 SKIGYEFTVKFLLQEAITHASVQEF 1283
            S + Y F    LL +A TH S  + 
Sbjct: 1896 SSLNYTFKDPSLLIQAFTHPSYHQL 1920



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 12/104 (11%)

Query: 1289 LYKHLQHCSTLLLSQITEYVKSFPKPGET--TDSG--------PSMKAPKALGDLLESIV 1338
            L+K+ +  S  LL  I  +V+       T  T++G          ++ PKAL D+ ES+ 
Sbjct: 1997 LHKYFRASSPQLLHTIDVFVRKSNNANNTIPTNTGHLTTNRLSDDVEIPKALSDIFESLA 2056

Query: 1339 GAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIEL 1380
            GA+ +D+  +LD VW+IF PI+   +      +P  P+R+L+EL
Sbjct: 2057 GAIFLDSNFSLDTVWQIFYPIMKERIERYTACIPKSPVRQLLEL 2100



 Score = 47.4 bits (111), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 7/78 (8%)

Query: 463 QKEVLESFRGGKVNLLFATD-----VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR- 516
           Q+E + +FR G +NLL AT      V   G  +P C+ VI   LP +++ Y+ S+ R+R 
Sbjct: 628 QEETITNFRRGAINLLVATQAAISTVTTSGTELPRCNLVIALRLPNSLAEYLSSKARSRL 687

Query: 517 -QHNSQFILMLERGNLKQ 533
             + ++ I +++  ++++
Sbjct: 688 VNYGAKVIYLMDHDSIEK 705


>gi|312376925|gb|EFR23878.1| hypothetical protein AND_11907 [Anopheles darlingi]
          Length = 1462

 Score =  101 bits (252), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 172/786 (21%), Positives = 295/786 (37%), Gaps = 201/786 (25%)

Query: 408  SFGKSTQVLC-IIFVERIIAAKV-------VERFVKKVPFLT-HLTVAYLTGSTTSVD-- 456
            S G +T+ LC +IF      A++       V R   +  FL+   TV  +    T     
Sbjct: 625  SGGGATEALCGLIFCHDRSIARILYVLLYEVARSQPEYAFLSAQYTVDKVVDPLTDAQHA 684

Query: 457  ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516
            AL  + Q+EVL+ FR    NLL  T V+EEG+ +P C+ VIR+  P    SY Q +GRA+
Sbjct: 685  ALEHRKQEEVLKRFRMHDCNLLIGTSVLEEGIELPKCNLVIRWSQPSNYRSYAQCKGRAK 744

Query: 517  QHNSQFILMLE-------RGNLKQRNKLFDIIR--------------------------- 542
               +  IL +          +LK    L D I+                           
Sbjct: 745  APGAYHILFVTPDVGSGGDKSLKHDQPLDDPIQVDEDTAGGDGVLDRNVGCADPADKELI 804

Query: 543  ---SERSVTDTALSRDPEACFLKAC----------TYVKTKSYIVESTGASVTTDSS--- 586
               ++  +   A+ R+ E   L  C           +    ++ +E   A+   D S   
Sbjct: 805  ERCTDAMIERVAIYREVEKLLLSKCRNGEPEDGELKHADCFNHCLEIFRAAPAPDRSPQA 864

Query: 587  -----------VNLIHRYCEMLPSDKYYTPKPIFK----YKSAEEAYECELTLPSNAPFQ 631
                       V  +++YC  LPSD +    PI++     ++    Y+  + LP N+P++
Sbjct: 865  SGGASLGLSNAVQTLNKYCAKLPSDTFTKLTPIWRCATTVRNDRTLYQYTIRLPINSPWK 924

Query: 632  --TIVGPTSR---------------------NKNLSKQLVCLEACEKLHQVGALNDHLLP 668
               +V   +R                      + L++++    AC  LH  G L+    P
Sbjct: 925  EDILVSSVTRCLCKNSILRIRIHHTQGLPMPTETLARRMAAYIACRMLHAAGELDHSFQP 984

Query: 669  -------SVEEPSEN--------NLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEK 713
                   + E   EN         ++S+ N+  P  GTTKR++ +    I ++      +
Sbjct: 985  FGKEAFRAFEADWENFELDELDAKILSENND--PRPGTTKRRQYYYKR-IASVFNECRPE 1041

Query: 714  CGVILHAY--KFNFACSIVTE-------IYS------GFVLLIESELDNDVGNFELELYL 758
             G   + Y  +    C I  E       IY+      GF +L  ++L   + +F   ++ 
Sbjct: 1042 VGTTAYLYYMRMELICPIPEEQNTRGRKIYAPEESPQGFGILT-TKLIPKISSF--PIFT 1098

Query: 759  VSKTVKATVSSSGQ-VHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETN 817
             S  VK ++    Q V L   Q+S   CF    F     K+    KS       +  + N
Sbjct: 1099 RSGEVKVSLDLCPQRVQLTEQQLSMVNCFVRYTFT----KVLRLQKS------LMLYDAN 1148

Query: 818  SLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVE-----FIKEKSFLGAAQCNN 872
            +       + ++P     T   G  +++W+ +   A  V+     FI +++  G      
Sbjct: 1149 AT---ENCFFIVPTIRKQTDDGGDVQVDWAFVEKIALNVDRSGPTFIPDEARKGY----- 1200

Query: 873  NGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGR----IYSIVEIVN 928
                                          D    +D VV+  +  R     + + EI +
Sbjct: 1201 ----------------------------QFDVNRFRDAVVMPWYRNRDQPQYFYVAEICH 1232

Query: 929  NSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVN--FNDGG 986
            + S +S F G+   +  TF  Y+  KY I + +  QPLL +  +    N L     N  G
Sbjct: 1233 HLSPKSAFPGS---NYATFEEYYHRKYDIQIQNVRQPLLDVDHTSARLNFLTPRYVNRKG 1289

Query: 987  ----GSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLAS 1042
                 S + +K        Q  + + PEL      P S+ ++   LP V+ R+ +L+LA 
Sbjct: 1290 VALPTSSEETKRAKRENLEQKQI-LVPELCTIHPFPASLWRAAVCLPCVLYRINALLLAD 1348

Query: 1043 QLREEI 1048
            ++R ++
Sbjct: 1349 EIRRQV 1354



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 37/248 (14%)

Query: 22  DMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK 81
           D GS+G    +     + ++    PR YQ ++  +A+  N I  L   + K  +AV LI+
Sbjct: 65  DSGSAGKMTVLHWMERNIHTTALTPRDYQTELLSMAREENLIVCLAHNSAKEFLAVKLIQ 124

Query: 82  DI----------AQAIKSNGFKKLIIFL------APTVHLVHQQYD--VIRVHTDFEVEE 123
            +            A  SN   +  +FL      A    +V    D  V  V  D E+  
Sbjct: 125 SLRSDRDERRAEDAAAASNRRPRKTVFLTERTDRAVLASMVANLTDLTVSMVANDGELSS 184

Query: 124 YYGAKGVDEWDSQCWQKEINKNDVLVM-TPQILLDALRKA-FLSLDIVCFIVIDECHHAT 181
            Y               ++  +DVL M +  +LL+ L +A  L ++ +  +++DECH   
Sbjct: 185 RY---------------DLAASDVLFMSSAAVLLELLDQAEVLRVEHIRLLIVDECHKTY 229

Query: 182 GNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE 241
           G+    ++       +  + K+ G+ A P+     +    C  ++  LE  L +++ T  
Sbjct: 230 GHPELWEVCSRIERSNGTRTKIVGL-AGPLHGASCTPERLC-WELQCLERCLRARIETAS 287

Query: 242 DKTEMEVF 249
           D T +  F
Sbjct: 288 DITSILRF 295


>gi|308455471|ref|XP_003090269.1| hypothetical protein CRE_17662 [Caenorhabditis remanei]
 gi|308265013|gb|EFP08966.1| hypothetical protein CRE_17662 [Caenorhabditis remanei]
          Length = 907

 Score =  101 bits (252), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 138/574 (24%), Positives = 242/574 (42%), Gaps = 104/574 (18%)

Query: 29  DHAVDGPSSSTNSINFIPRIYQLKVFEVAKRR-NTIAVLETGAGKTMIAVMLIKD--IAQ 85
           + +V+    + NSIN   R YQ+++  +A +  NTI    TG GKT++A  ++K+    +
Sbjct: 160 NSSVNPSLQNENSINL--RNYQVELCRLAVQGINTIVTAPTGTGKTVVAANIVKNHFEVR 217

Query: 86  AIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN 145
           A +   FK L  FLAP   ++ QQ D +    +  +   Y  K     D+   ++ +  N
Sbjct: 218 AREEKTFKAL--FLAPNTTILQQQADRL----NHFLAHSYDLKICQGSDNSPTRQAVLSN 271

Query: 146 DVLVMTPQIL----------LDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195
           D++V TPQ++          L         L     I+ DECH    N PY  IM+E YH
Sbjct: 272 DIIVATPQMIVNLCNEHEDELSEFSNEKFYLSTFSIILFDECHSTVNNSPYANIMRE-YH 330

Query: 196 KSDNK---------PKVFGMTASPVVRKGVSSAMDCEGQISELEST---LDSQVFTI--E 241
              N          P++ G+TAS     G   A + E  I  + S    LD +  +   E
Sbjct: 331 TLKNMGTMPDNHELPQIVGLTAS----LGTGDANNVEKVIQHIASMCALLDVEKLSTVCE 386

Query: 242 DKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL-EVSWSKFDASLSKLQGSQLNC--YKD 298
              E+++F P   E    ++++K   S   G+  E+     D     L+ + ++   Y  
Sbjct: 387 YADELQMFSPIIPEKIYSFEKNKDGSS---GRFAELVKQIMDNITMMLETAFVSREEYSK 443

Query: 299 MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC- 357
           + +  KT  K    Y    L CL        ++  +  + + L   + C  YR  S    
Sbjct: 444 VTNGEKTPAKDHVAY-LNWLSCLKRSVAEQNFQGNRNNINEALNMLDIC--YRSQSFNSN 500

Query: 358 -------KYF--------------LEEVLH-------VIGSALPLADKIFLDFGFDYSKA 389
                  KYF              ++EVLH        +GS +P+ + + L         
Sbjct: 501 FNPRTAFKYFDEKVKEQERFLTERMKEVLHQYYPRLEQLGSDVPIENPMIL--------- 551

Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL--THLTVAY 447
                   K+ +LL       ++++   IIFV+    A  ++  +     L   ++   Y
Sbjct: 552 --------KIEDLLTENHRENQNSR--AIIFVQTRYDAITLKNILCDNENLLSQNIRTDY 601

Query: 448 LTGSTTSVD-----ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
           + G   + +     A++   Q E L+ F  G + +L +T V EEG+ +  C+ VI+++  
Sbjct: 602 ILGLNKTTEGSEDSAISRSDQVEKLKQFGSGGIRVLVSTSVAEEGLDISECNLVIKYNYA 661

Query: 503 KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
             V +++Q RGR R + S+ IL+    +L+++ +
Sbjct: 662 TNVIAHVQRRGRGRANGSRSILITNDPSLEKQER 695


>gi|148231712|ref|NP_001085915.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Xenopus laevis]
 gi|49256146|gb|AAH73528.1| MGC82787 protein [Xenopus laevis]
          Length = 682

 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 140/570 (24%), Positives = 244/570 (42%), Gaps = 84/570 (14%)

Query: 49  YQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK--LIIFLAPTVHL 105
           YQ +V   A + +N I  L TGAGKT  A+ +      A++    K+   +  +   VHL
Sbjct: 6   YQWEVIGPALEGKNIIIWLPTGAGKTRAALYV------AMRHLEMKRNAKVCLMVNKVHL 59

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKE-INKNDVLVMTPQILLDAL----R 160
           V Q +     H   + ++Y       + + +C+  E +  NDV++ T QIL +AL     
Sbjct: 60  VDQHFSN-EFHPHLK-DKYKVVAISGDTEHKCFFAELVQNNDVIICTAQILQNALSSSSE 117

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGV 216
           +  + L     ++IDECHH   +  Y K+M+ +  +   +    P++ G+TASP   +  
Sbjct: 118 EIHVELTDFTLLIIDECHHTHKDGVYNKLMEGYLERKITQKGKLPQILGLTASPGTGRA- 176

Query: 217 SSAMDCEGQISELESTLDS-QVFTIEDKTEMEVFVPSAKESCRFYD-------------- 261
           +S    E  I ++ + LD+ ++ + E     E     AK+  + YD              
Sbjct: 177 TSFEKAEEHILQICANLDTWRIMSAE--VHREDLEAKAKQPNKQYDLVTERPRDPFGDKL 234

Query: 262 ------------QSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQ 309
                        + FC SD   +L   + +    L K    + N  K      +T    
Sbjct: 235 KELMKTIHEYLRTTDFCESDFGTQL---YEQKVVELEKEGAVEANRMK------RTCALH 285

Query: 310 LSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIG 369
           L  Y+  +L   D + ++ AYE +          Q+E  I +Q+     + ++       
Sbjct: 286 LRKYNDSLL-VHDTVRMMDAYELLDDYY------QQEKVIRKQNDPTDAFLIQLFDGNRA 338

Query: 370 SALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKV 429
             L LA     D  F+  K         KL E+L+    F   ++   IIF     +   
Sbjct: 339 RLLELAQ----DVRFENPKL-------RKLEEILRDQFQFSSGSR--GIIFTRTRQSTHS 385

Query: 430 VERFVK-KVPF-LTHLTVAYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIE 485
           +  ++  K  F +  +  A LTG+  S  +  +T   Q+E +E FR G++NLL +T V E
Sbjct: 386 LHNWISSKHSFQIMGVKTAPLTGAGYSNQSKHMTQNEQRETIEMFRKGQLNLLISTSVAE 445

Query: 486 EGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK-QRNKLFDIIRSE 544
           EG+ +P C+ V+R+ L     S +Q+RGRAR  +S +  + + G  + +R +  + +   
Sbjct: 446 EGLDIPQCNIVVRYGLMTNEISMVQARGRARHEDSCYSFLAKIGGKEIRREETNETLEGL 505

Query: 545 RSVTDTALSRDPEACFLKACTYVKTKSYIV 574
                 A+ R PE  + K    ++ +S I 
Sbjct: 506 MKRAIEAVQRMPEQEYQKKIKELQEESVIA 535


>gi|194377180|dbj|BAG63151.1| unnamed protein product [Homo sapiens]
          Length = 536

 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 132/532 (24%), Positives = 233/532 (43%), Gaps = 75/532 (14%)

Query: 35  PSSSTNSIN----FIPRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS 89
           P S  +  N    F PR YQL++     K +NTI    TG GKT +++++ +   +    
Sbjct: 25  PPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF-P 83

Query: 90  NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLV 149
            G K  ++F A  + +  QQ  V   + +       G  G    +    Q  +  ND+++
Sbjct: 84  QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIII 142

Query: 150 MTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKV 203
           +TPQIL++ L+K  + SL I   ++ DECH+ +  HPY  IM  +  +     S   P+V
Sbjct: 143 LTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQV 202

Query: 204 FGMTASPVV--RKGVSSAMDCEGQISELESTLDSQVF-TIE---DKTEMEVFVPSA---K 254
            G+TAS  V   K    A+D    I +L ++LD+ V  T++   ++ E  V+ P     K
Sbjct: 203 IGLTASVGVGDAKNTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRK 259

Query: 255 ESCRFYDQSKFCGSDLKGKLEVSWSKF---DASLSKLQGSQLNCYK-------------- 297
              R  D+ K+  + L    E    +      +LS++Q  +    K              
Sbjct: 260 VESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMV 319

Query: 298 -DMDDKHKTLR--KQLSDYHAKILYCLDELGLICAYEAVKICLEKV------LKAQEECE 348
             M DK +  R  K L  Y + +    D L +I  +  +K  L+ +      ++A    E
Sbjct: 320 FQMPDKDEESRICKALFLYTSHLRKYNDAL-IISEHARMKDALDYLKDFFSNVRAAGFDE 378

Query: 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS 408
           I +  + + +  L+E+           + +  D   +  K  DL +I  + + L      
Sbjct: 379 IEQDLTQRFEEKLQEL-----------ESVSRDPSNENPKLEDLCFILQEEYHL------ 421

Query: 409 FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLT--GSTTSVDALTPKVQKEV 466
              + + + I+FV+       ++ +++  P L+ L    LT  G T     +T   QK +
Sbjct: 422 ---NPETITILFVKTRALVGALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 478

Query: 467 LESFRG-GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
           L++F+  G  N+L AT V +EG+ +  C+ VI ++    V   IQ+R   ++
Sbjct: 479 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTREEEQE 530


>gi|367043588|ref|XP_003652174.1| hypothetical protein THITE_36500 [Thielavia terrestris NRRL 8126]
 gi|346999436|gb|AEO65838.1| hypothetical protein THITE_36500 [Thielavia terrestris NRRL 8126]
          Length = 1101

 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 139/566 (24%), Positives = 224/566 (39%), Gaps = 80/566 (14%)

Query: 9   KRSFGEVHSPNPPDMGSSGHDHAVDGPSSST--NSINFIP-RIYQLKVFEVAKRRNTIAV 65
           +R F     P PP        H +D    ST    +N  P R YQ  + + A   NT+  
Sbjct: 127 RRPFRVDLPPEPPTH------HELDQRELSTWVYPLNLGPIRDYQFSIVKNALFNNTLVA 180

Query: 66  LETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD-------VIRVHTD 118
           L TG GKT IA  ++ +  +  K    +  I+F+APT  L  QQ         + R    
Sbjct: 181 LPTGLGKTFIAATVMLNYYRWTK----RAKIVFVAPTKPLASQQVQACLNVAGIPRSQAT 236

Query: 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECH 178
               E       +EW ++          +  MTPQ L++ L K +     +  +VIDE H
Sbjct: 237 LLTGETPPGLREEEWGTKR---------LFFMTPQTLMNDLSKGYADPKSIVLLVIDEAH 287

Query: 179 HATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-VVRKGVSSAMDCEGQISELESTLDSQV 237
            ATG++ Y K++ EF  +     +V  +TA+P    +GV   +D  G IS +E       
Sbjct: 288 RATGDYAYVKVV-EFIRRFSKSFRVLALTATPGSTVEGVQDIIDNLG-ISHVE------- 338

Query: 238 FTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYK 297
              E+  ++  +V S     R  D   F  SD   ++   +SK    L     SQ N Y 
Sbjct: 339 IRTEESIDIRQYVHS-----RNIDTVTFDPSDEMDEIRNLFSKALKPLVDKLSSQ-NIYY 392

Query: 298 DMDDKHKT---LRKQLSDYHA------------------KILYCLDELGLICAYEAVKIC 336
             D    T   L K   D+ A                   IL  L     +  +  ++  
Sbjct: 393 GKDPMSLTTYGLLKSRQDWLAGPGRHVNQGTKFMMMAVFSILQSLAHSIKLLNFHGIRPF 452

Query: 337 LEKV--LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGY 394
              +   +A EE +  + S L+ +   +E    + S   L ++     GF+      L Y
Sbjct: 453 YNSLAEFRATEEGKPGQGSKLKRQLLADENFQKMMS---LIERWMKVQGFNGHPK--LTY 507

Query: 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS 454
           +      L+  F   G  +    I+F E   +A+ + R +   P ++  TV      +  
Sbjct: 508 L---CETLVNHFADAGDGSNTRAIVFSEYRDSAEEIVRLLNTQPLIS-ATVFVGQADSKR 563

Query: 455 VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
              +  K Q E +E F+ G  N+L AT + EEG+ +     ++ +D   +    +Q  GR
Sbjct: 564 SGGMKQKQQIETIEKFKSGAFNVLVATSIGEEGLDIGQVDLIVCYDASASPIRMLQRMGR 623

Query: 515 -ARQHNSQFILMLERGNLKQRNKLFD 539
             R+     +L+L +G  K+  K  D
Sbjct: 624 TGRKRAGNIVLLLMKG--KEEEKFMD 647


>gi|390961773|ref|YP_006425607.1| Hef nuclease [Thermococcus sp. CL1]
 gi|390520081|gb|AFL95813.1| Hef nuclease [Thermococcus sp. CL1]
          Length = 785

 Score =  101 bits (251), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 218/502 (43%), Gaps = 55/502 (10%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR+YQ  ++   K  N + VL TG GKT+IA MLI D     + + +   ++FLAPT  L
Sbjct: 10  PRVYQEVIYARCKETNCLVVLPTGLGKTLIA-MLIADY----RLSRYGGKVLFLAPTKPL 64

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKG--VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
             Q  +  R   +   E+     G    E  ++ W++ +    V+  TPQ + + +    
Sbjct: 65  ALQHAESFRKIFNLPPEKINVLTGELSPEKRAEVWRESV----VITATPQTVENDVLTGR 120

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
           +SL+ V  +V+DE H A GN+ Y  I KE Y K+   P V G+TA         S    E
Sbjct: 121 ISLEDVVLLVVDEAHRAVGNYAYVFIAKE-YLKTAKHPLVLGLTA---------SPGSDE 170

Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF-YDQSKFCG--SDLKGKLEVSWSK 280
            +I E+   L   +  IE +TE    V    +   F + + +  G  ++++  L      
Sbjct: 171 EKIREIVRNLG--IGRIEVRTENSPDVKPYVQRIAFEWVKVELPGIYTEVRSLLR---EM 225

Query: 281 FDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV 340
              SL  L   +L      D   + + +  S  + ++     ELG +  Y+A      K 
Sbjct: 226 LKESLKPLAQFKLVSTYSPDISKREVLQAGSKINREVAMGNYELGRLRMYQA------KA 279

Query: 341 LKAQEECEIYRQSSLQC--KYF--LEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS 396
           +K Q   E+     L     Y   L E      S   + D       +   +A ++G   
Sbjct: 280 VKLQHAIELLETQGLTALRAYLKKLREDKRTKSSRELMEDPRMRKVIYLLVQAKEMGMDH 339

Query: 397 TKLHELLQLFL-SFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVA---YLTGS 451
            K+ +L +L      +      I+F   R    K+VE        L  L ++   ++  +
Sbjct: 340 PKMEKLKELIKKQLERKPNSKIIVFTNYRDTGRKIVEE-------LGGLGISAERFIGQA 392

Query: 452 TTSVD-ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD-LPKTVSSYI 509
           +   D  ++ + QKE LE F  G+ N+L AT V EEG+ VP    V+ ++ +P  + S I
Sbjct: 393 SRGKDKGMSQRKQKETLERFSRGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRS-I 451

Query: 510 QSRGRARQHN-SQFILMLERGN 530
           Q RGR  +H   + ++++ +G 
Sbjct: 452 QRRGRTGRHRPGKVVILMAKGT 473


>gi|358380675|gb|EHK18352.1| hypothetical protein TRIVIDRAFT_47151 [Trichoderma virens Gv29-8]
          Length = 1386

 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 22/186 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ+++ E +  RN I  ++TG+GKT +AV+ IK     ++S   KK++ F+APTV L 
Sbjct: 4   RAYQIEMLEQSLERNVIVAMDTGSGKTQVAVLRIK---SELESCDPKKIVWFMAPTVSLC 60

Query: 107 HQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            QQ DV+++      +    G   ++ W  + W   +    V+V TPQ+LLDAL  A+++
Sbjct: 61  TQQKDVLKLQIPAVPMTLLAGNSAINAWGPEIWHTLLGTTRVVVSTPQVLLDALDHAYIT 120

Query: 166 LDIVCFIVIDE--------------CHHATGNHPYTKIMKEFYHK----SDNKPKVFGMT 207
           ++ +  +V DE               H+  G +P  ++M   YH       + P + G+T
Sbjct: 121 MNHLALLVFDEGKNKTADTVCLIYIAHNCIGKNPGGRVMLNHYHPCKQVGGSVPSILGLT 180

Query: 208 ASPVVR 213
           A+P ++
Sbjct: 181 ATPSIQ 186



 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 129/294 (43%), Gaps = 49/294 (16%)

Query: 998  TKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHI 1057
            T KP   V+  P   V   +P+   +   L+PS++  L  +++A +L   I    R   I
Sbjct: 865  TSKPYARVYPLPWATVDA-IPVRHAQFGMLIPSIIHELGVMIMAKELANNI---LRKVGI 920

Query: 1058 PS-SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1116
             +  L+ +A+      E  + ER+ELLGDS+LK+     +   YP   EG LS +R   +
Sbjct: 921  KNMDLVRQAICARSASEPVNYERVELLGDSILKFFTCIRVAAEYPDYPEGYLSHKRDRLI 980

Query: 1117 CNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQD 1176
             N+ LHK   + KL  ++    F  ++W        RP+  +  +D  EV  +G   T  
Sbjct: 981  SNARLHKTALEFKLPRFLNTKPFTGQKW--------RPLYLDAVLD--EVRQEGLEPTSQ 1030

Query: 1177 TKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAA-------LYMMKWLGIDAD 1229
                         R + +KT+AD  EALIG  YV G L  A       L    W  ++ D
Sbjct: 1031 K------------RKISTKTLADMVEALIGVSYVDGHLDKAVKCISLFLPETNWTSVEND 1078

Query: 1230 LEVSLVDDCITRASLRSYVPRIN----EIKDIESKIGYEFTVKFLLQEAITHAS 1279
                       R ++   VP        ++ +E  IGY F  K LL EA+THAS
Sbjct: 1079 -----------RRNIFDKVPADEPLPPTLEPLEGLIGYSFQKKALLIEALTHAS 1121



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 131/296 (44%), Gaps = 35/296 (11%)

Query: 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAA-------KVVERFVKKVPFLTHLTVAY 447
           IS K+ +LL   LS  + T  + IIFVE            +V +  + K    T    A 
Sbjct: 362 ISDKVDKLLIELLSAEEPT--VGIIFVEERATVTMLAELLRVNQAIMAKYKIGTMFGTAA 419

Query: 448 LTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
                 ++     K   + L +FR GK+NLL AT V+EEG+ VP C+ VI FD P T  S
Sbjct: 420 YATRRKAMYEFGDKTDYKDLLNFRHGKINLLIATSVLEEGIDVPACNLVICFDTPTTSKS 479

Query: 508 YIQSRGRARQHNSQFILM-------LERGNLKQR--NKLFDIIRSERSVTDTALSRDPEA 558
           +IQ RGRAR+ +S+ ++        LE+   K+    KLFD    +R V   +   D E+
Sbjct: 480 FIQRRGRARKRDSKLVIFFELESPALEKWITKEEEMKKLFD--DEQREVRRLSQLEDSES 537

Query: 559 CFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKP--IFKYKSAEE 616
                        +IV STGA +  D++ + +  +C +L   ++   +P  I   +    
Sbjct: 538 P--------SDDVFIVPSTGARLEFDNAKSHLEHFCRVLSPGEFVDSRPDYIIHKEPDSG 589

Query: 617 AYECELTLPSNAPF----QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
           +  C + LP   P      +        KN +K     +A   L+    +ND+L P
Sbjct: 590 SLTCVVLLPPFLPVSLRKHSSASAWQSEKNATKD-AAYQAYRALYDAELVNDNLQP 644


>gi|149408137|ref|NP_001092258.1| probable ATP-dependent RNA helicase DHX58 [Rattus norvegicus]
          Length = 678

 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 129/519 (24%), Positives = 216/519 (41%), Gaps = 56/519 (10%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +        ++ L   VHL
Sbjct: 4   RPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGK----VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA- 162
           V+Q  +  R   D  + V    G  G        +      +D+L+ T ++L  AL+ + 
Sbjct: 60  VNQHAEEFRRMLDKQWTVTTLSGDMG----SRAGFGLLARSHDLLICTAELLHLALKSSE 115

Query: 163 ---FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH----KSDNKPKVFGMTASPVVRKG 215
               + L     IV+DECHH   +  Y  I+  +      K+   P+V G+TASP    G
Sbjct: 116 EDEHVELTEFSLIVVDECHHTHKDTIYNTILSRYLEHKLKKAKPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I    +L + LD+    +  K      +    + C+ YD  +    D  G
Sbjct: 172 TGGATKLQGAIDHILQLCANLDTWRI-MSPKNCYSQLLEHNPKPCKQYDLCQRRTQDPFG 230

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            L          L KL   Q++   +M D  +    Q+  Y  +++    +       E 
Sbjct: 231 DL----------LKKLM-KQIHQQLEMPDLKQQFGTQM--YEQQVVQLSKDAAEAGLQEQ 277

Query: 333 VKICLE-----KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
               L        L   +    +   ++   ++  E    + + +  A++  L+   D+ 
Sbjct: 278 RVYALHLRRYNDALYIHDTVRAWDALNMLQDFYDTE--RALKTQMVHAERWLLELFDDHR 335

Query: 388 KAVDL----GYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
           KA+      G  + KL  L  + L  FG       IIF      A  +  ++++ P L  
Sbjct: 336 KALAQFAAQGPENPKLEMLEGILLKQFGSPDHTRGIIFTRTRQTASSLLLWLRQQPCLQT 395

Query: 443 LTVA----YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
           + +        G+T     +T K Q+EV++ FR GK+NLL AT V EEG+ +  C+ V+R
Sbjct: 396 VNIKPQMLIGAGNTGQSTHMTQKDQQEVIQEFRDGKLNLLVATSVAEEGLDIAQCNVVVR 455

Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           + L     S +Q+RGRAR   S +  +   G+ + + +L
Sbjct: 456 YGLLTNEISMVQARGRARAGQSVYSFVATEGSREIKREL 494


>gi|290993372|ref|XP_002679307.1| dicer helicase [Naegleria gruberi]
 gi|284092923|gb|EFC46563.1| dicer helicase [Naegleria gruberi]
          Length = 857

 Score =  100 bits (250), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 19/231 (8%)

Query: 31  AVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN 90
           +V   S++T+++    R YQ ++ E  K  NTI V  TGAGKT IA +LI  +   +  N
Sbjct: 92  SVVSNSTATSTLLSNAREYQKELVEHCKDENTIIVAPTGAGKTFIAALLIHHM---LNLN 148

Query: 91  GFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVM 150
            FKK ++F+   + LV QQ   +R   +F +E+  GA   ++   + W+ E     VLV 
Sbjct: 149 PFKK-VLFIVNQISLVEQQARALR---EFGIEK-VGAFHGEKKSIKNWKLETKDFTVLVC 203

Query: 151 TPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGM 206
           T QI+L+ L+ + +  D +  ++ DECHH   NHP+  +M+++Y    H     P++ G+
Sbjct: 204 TIQIILNVLQYSDI-FDDLQLLIFDECHHTHSNHPFKVLMRDYYKPRKHAGLLIPRILGL 262

Query: 207 TASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTE---MEVFVPSAK 254
           +A+P  +  ++  +    +I +L   LD  V  +E+  E     VF PS K
Sbjct: 263 SATPAAKNTIAETL---LKILQLGHDLDCTVRQVENNEEELGTFVFTPSMK 310



 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 70/125 (56%), Gaps = 7/125 (5%)

Query: 399 LHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTSVDA 457
           L +LL+ +   GK  + L  IFV+  I  K    F++  P L  +L V  L G +     
Sbjct: 416 LAKLLKQYKETGKELRAL--IFVKTRIGCKETLEFLQSEPDLKDYLKVDILLGKS----G 469

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
           +T   Q  +L++FR G VN L +T V EEG+ VP CS VIR D  +T  + IQSRGRAR 
Sbjct: 470 MTSNQQNTILDNFRQGIVNTLISTSVAEEGLDVPACSLVIRLDGIETTKTMIQSRGRARS 529

Query: 518 HNSQF 522
            NS+F
Sbjct: 530 ANSEF 534


>gi|301773535|ref|XP_002922173.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like
           [Ailuropoda melanoleuca]
 gi|281344530|gb|EFB20114.1| hypothetical protein PANDA_011148 [Ailuropoda melanoleuca]
          Length = 684

 Score =  100 bits (250), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 134/546 (24%), Positives = 227/546 (41%), Gaps = 72/546 (13%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +  +G K  ++ L   VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIMWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +      D  + +    G  G        +      +D+++ T ++L  AL    
Sbjct: 60  VSQHCEEFSRMLDNRWAITTLSGDMG----PRAGFGHLARSHDLIICTAELLQLALASPE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKG 215
            +  + L     +V+DECHH   +  Y  I+ ++      +    P+V G+TASP    G
Sbjct: 116 EEEHVELHAFSLLVVDECHHTHKDTVYNVILSQYLQHKLQRTRPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEG---QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   EG    I +L + LD+    +  +T        + + C+ Y+    C      
Sbjct: 172 TGGASTLEGAVDHILQLCANLDTWRI-VSPQTYRRHLQEHSPQPCKQYN---LCHRR--- 224

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGL----IC 328
               S   F  +L KL     +C K  +       +       ++     E GL    +C
Sbjct: 225 ----SLDPFGDTLKKLMDRIHDCLKMPELSQDYGTQNYEQQVVELSQAAAEAGLQQRRVC 280

Query: 329 AYEAVK----ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF 384
           A    +    + +   ++A +  +  R    + +    +VL         A++  L    
Sbjct: 281 ALHLRRYNDALLVHDTVRAVDALDSLRDFYDRERTTKTQVLQ--------AERWLLALFD 332

Query: 385 DYSKAVDLGYIST------KLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKV 437
           DY    +L +++T      KL  L Q+    FG S     IIF +   +   +  ++++ 
Sbjct: 333 DYKN--ELAHLATCSPENPKLEMLEQILREQFGSSDSPRGIIFTQTRQSTHSLLLWLQQQ 390

Query: 438 PFLTHLTVA--YLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           P L  + +    L G+ TS     +T + Q+EV+  FR G +NLL AT V EEG+ +P C
Sbjct: 391 PGLQTVDIRADLLIGAGTSSQNTHMTQRDQQEVIRKFRVGTLNLLVATSVAEEGLDIPQC 450

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALS 553
           + V+R+ L     S +Q+RGRAR   S +  +  +G  + R +L +         +T + 
Sbjct: 451 NVVVRYGLLTNEISMVQARGRARAGQSIYSFVANQGGRELRRELTN------EALETLME 504

Query: 554 RDPEAC 559
           R   AC
Sbjct: 505 RAVAAC 510


>gi|328773741|gb|EGF83778.1| hypothetical protein BATDEDRAFT_85615 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1746

 Score =  100 bits (249), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 140/637 (21%), Positives = 239/637 (37%), Gaps = 124/637 (19%)

Query: 908  KDMVVLAIHTGRIYSIVEIVNNSSAESPFD-GNTDDDSKTFVNYFSEKYGIVLIHPGQPL 966
            KD++V   H    Y I     N +A S    G       T     +   G  + HP   L
Sbjct: 1150 KDIIVYTPHNNIKYQIKCWSENCNAYSELTIGKGKGQHITTYQAIASSQGYTVDHPNANL 1209

Query: 967  LRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELL---VRVDVPISVVK 1023
            L+  +   PH       D   S + +K+  N      ++   P+L+    RV  PIS   
Sbjct: 1210 LKCVRI--PH-----IKDYRRSCQATKNKHNCVDDNQNLDNLPQLVPDAFRVS-PISAKL 1261

Query: 1024 SL--YLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLE 1081
            ++  + LPS++  L +  LA++  ++   + +   IP S ++ A TT       + ERLE
Sbjct: 1262 TMVAHYLPSILYSLHTACLAAEFDQKYGLYPK--QIPLSTLMSAFTTPAANSITNYERLE 1319

Query: 1082 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
             LGD VLK+ V+ +L  +Y     GQLS   S  V N  L ++     L G +  + F  
Sbjct: 1320 TLGDKVLKFGVAHYLHSSYQSYEVGQLSTILSGLVSNKNLFEIAQQHSLTGMLNTAPFQS 1379

Query: 1142 RRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD---MGHRWMGSKTIA 1198
              W  P                         F  +T++ V        + +R    K  +
Sbjct: 1380 NSWTPPS------------------------FCFETRIFVAPTASVDCLDNRVFCGKKQS 1415

Query: 1199 DCAEALIGAYYVGGGLIAALYMMKWLGIDADL--------EVSLVDDCITRASLRSYVPR 1250
            D  EAL+GAY++  G+ AAL++M+   +  ++        + + + D    +     + R
Sbjct: 1416 DFIEALLGAYFLECGVEAALHLMRTFRLINEIPPHCFRHGDTNKLHDHQISSMQNPILSR 1475

Query: 1251 INE--IKDIESKIGYEFTVKFLLQEAITHA----------------SVQEFYCYQNLYKH 1292
            +++  +  ++ K+ Y F    LL  A+                   ++ +    +  Y+H
Sbjct: 1476 LDQETVDHVQQKLSYNFHNPELLLIALMTPFYFVKSKFERLEFLGDAIMDILVARYFYRH 1535

Query: 1293 LQHCSTLLLSQITE----------------------------------------YVKSFP 1312
             +H     LS++ +                                        Y+++  
Sbjct: 1536 YKHADPCSLSKMIQATVCKPAFCKILVSLKLHEHLLQSSQLSQHSKEAIVLYANYIQNSH 1595

Query: 1313 KPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPD-KLEL 1371
                   +  ++  PK L D+ E IV A+ IDT  NL+    +  P +   +  +  LE 
Sbjct: 1596 SQHAFKQADKAIDGPKVLCDVFEVIVAAIFIDTGYNLERTRLVIFPYVHSFIQSNINLET 1655

Query: 1372 ---PPLRELIELCDSLGYFVKENCTLKGEM----VHAELRLQLKDVLLVGEGQERSRKAA 1424
               PP+R+L     S G F  E   L  E      H    +    VL     Q  + K A
Sbjct: 1656 ITEPPIRQLFAFVQSQG-FSSEKLELSDESNADGFHKASVVFYGTVL--ATSQATTLKLA 1712

Query: 1425 KGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTT 1461
            K  A+ + L  L+  +K   K   N     + C+Q+T
Sbjct: 1713 KQHASIKALNVLKHTKKATLKDMVNL----NSCKQST 1745



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 105/233 (45%), Gaps = 39/233 (16%)

Query: 49  YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI--------------------- 87
           YQ++V+E A   N IA +++   KT++++MLI  I + +                     
Sbjct: 9   YQIRVYEEAIHHNVIAFMDSNDYKTLVSIMLIDAITEKLPLVHVQPSQQTYSTSENNLAV 68

Query: 88  --------KSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYG--AKGVDEWDSQC 137
                   ++   +K I+ +  T   V ++ + I  +TD  V  Y G  +  +   D   
Sbjct: 69  STYHIQNSETLNSRKTIVCVG-TKGAVKEKANEIHQYTDLVVRGYSGEESSSISHLDYNH 127

Query: 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDI-VCFIVIDECHHATGNHPYTKIMKEFYHK 196
           WQKE + + VLVM  Q+ ++ L + +L L   +C I+ DECHH+     +  IM  FY  
Sbjct: 128 WQKEFSNSQVLVMPQQLFVNLLTRKYLDLSKHICLIIFDECHHSRNAQEHQAIMNGFYCH 187

Query: 197 ---SDNKPKVFGMTASPVVRKGVSSAM-DCEGQISELESTLDSQVFTIEDKTE 245
                 +PK+F +++ P+    +S  + D E  + +L      Q   + D+ +
Sbjct: 188 IPVRSPRPKIFVVSSIPI--HSISMNLKDLEKNLKDLMVMFSCQTVVVPDRRQ 238



 Score = 40.0 bits (92), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 464 KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG-RARQHNSQF 522
           +  L+ F+  ++N+L  ++  +   H+P C  VI FD P+    Y + +G       SQF
Sbjct: 513 QNTLQRFKSRELNVLVVSNFGQNRCHLPKCGLVILFDWPRKQLCYERLKGYTGGVPGSQF 572

Query: 523 ILMLERGNLK 532
           I+M+ +G+ K
Sbjct: 573 IVMVAKGHSK 582


>gi|448307318|ref|ZP_21497216.1| Hef nuclease [Natronorubrum bangense JCM 10635]
 gi|445595986|gb|ELY50083.1| Hef nuclease [Natronorubrum bangense JCM 10635]
          Length = 810

 Score =  100 bits (249), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 132/515 (25%), Positives = 216/515 (41%), Gaps = 82/515 (15%)

Query: 43  NFIPR-IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
           NF+ R +YQLK+   A   +T+  L TG GKT +++++    A+ +   G   L+  LAP
Sbjct: 19  NFLERRLYQLKLAGTAANDHTLVCLPTGLGKTTVSLLVT---ARRLDEVGGTSLM--LAP 73

Query: 102 TVHLVHQQYDVIRVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158
           T  LV Q  D  R      D E+  + G    D+  ++ W        V++ TPQ++ + 
Sbjct: 74  TKPLVQQHADFYREALQIPDEEIVVFTGDVSPDDR-AELWTDAT----VVMATPQVIEND 128

Query: 159 LRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSS 218
           L  + +SL  V  I  DECH ATG++ Y  I  E YH    +P V GM+A        S 
Sbjct: 129 LVGSRISLADVSHITFDECHRATGDYAYNYIA-ERYHGDATQPLVTGMSA--------SP 179

Query: 219 AMDCEG--QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276
             D E   ++ E     D +V T +D                  D SKF  +      +V
Sbjct: 180 GGDEEAILEVCENLGIQDVEVMTEDDA-----------------DVSKFTHN-----TDV 217

Query: 277 SWSKFD--ASLSKLQGSQLNCYKDMDDKHKTL-----------RKQLSDYHAKILYCLDE 323
            W + D    + +++ +  +  K+  +K K L           +K L+   A++      
Sbjct: 218 EWERIDLPDEVLEIRDTLNDVIKNRLEKLKELGVASSTQPDQSQKDLNRMRAELQ----- 272

Query: 324 LGLIC-----AYEAVKICLEKVLKAQEECEIYRQSSLQ--CKYFLEEVLHVIGSALPLAD 376
            GLI       ++ + I  E V+K ++   +    S++  C+YF  +      S    A 
Sbjct: 273 -GLINNDQSKGFKGMSIHAE-VMKLRQAVTLVETQSVEAVCRYFDRQRNQARSSGASKAS 330

Query: 377 KIFLD---FGFDYSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVER 432
           +  +          KA     +  K  +   L   + G       IIF E    A+ +  
Sbjct: 331 QRMVSDPRVREAMRKAESFDQLHPKYRKTRMLLAETLGLEGGERVIIFTESRDTAEALTE 390

Query: 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPN 492
           F+ +  F     V    G     D +T K Q+ VL+ FR G+  +L +T V EEG+ VP 
Sbjct: 391 FLSE-SFDAKRFVGQ--GDREGSDGMTQKQQQAVLDDFRAGEFEVLVSTSVAEEGLDVPE 447

Query: 493 CSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILML 526
              V+ ++   T    IQ +GR  RQ   + ++++
Sbjct: 448 VDLVLFYEPVPTAIRSIQRKGRTGRQSEGRVVVLM 482


>gi|355754175|gb|EHH58140.1| Putative ATP-dependent RNA helicase DHX58 [Macaca fascicularis]
          Length = 678

 Score =  100 bits (248), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 134/526 (25%), Positives = 232/526 (44%), Gaps = 66/526 (12%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +  +G K  ++ L   VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +  R   D  + +    G  G        +      +D+L+ T ++L  AL    
Sbjct: 60  VTQHGEEFRRMLDGRWTMTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTSPE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKG 215
            +  + L     IV+DECHH   +  Y  IM  +      ++   P+V G+TASP    G
Sbjct: 116 EEEHVELTAFSLIVVDECHHTHKDTVYNVIMSRYLELKLQRARPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I    +L + LD+    +  +         +++ C+ Y+       D  G
Sbjct: 172 TGGASKLDGAIDHVLQLCANLDTWCI-MSPQNYRPRLQEHSQQPCKQYNLCHRRSQDPFG 230

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            L          L KL   Q++ + +M +  +    Q+  Y  +++  L E   +   + 
Sbjct: 231 DL----------LKKLM-DQVHDHLEMPELSRNFGTQM--YEQQVVK-LSEAAALAGLQE 276

Query: 333 VKICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            ++    + +  +   I+         ++LQ  Y  E   H+  + +  A++  L   FD
Sbjct: 277 QRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE---HITKTQILCAERRLLAL-FD 332

Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKV 437
             K V L +++T      KL E+L+  L   F  S     IIF     +A  +  ++++ 
Sbjct: 333 GHKNV-LAHLATHGPENPKL-EMLEKILQRQFRSSDSPRGIIFTRTRQSAHSLLLWLQQQ 390

Query: 438 PFLTHLTV-AYL---TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           P L  + + A L    G+++    +T + Q+EV+  FR G +NLL AT V EEG+ +P C
Sbjct: 391 PGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQC 450

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           + V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L +
Sbjct: 451 NVVVRYGLLTNEISMVQARGRARADQSVYSFVATEGSRELKRELIN 496


>gi|351699900|gb|EHB02819.1| Putative ATP-dependent RNA helicase DHX58 [Heterocephalus glaber]
          Length = 678

 Score =  100 bits (248), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 214/514 (41%), Gaps = 46/514 (8%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + RN I  L TG GKT  A  + K   + +     +  ++ L   VHL
Sbjct: 4   RPYQWEVIMPALEGRNVIIWLPTGTGKTRAAAYVAKRHLETVD----RAKVVVLVNRVHL 59

Query: 106 VHQQYD--VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +   + +   + +    G  G        +      +D+L+ T ++L  AL    
Sbjct: 60  VTQHAEEFSLMLGGRWAMTTLSGDMGA----RAGFGHGARSHDLLICTAELLQMALSSTQ 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HKSDNK---PKVFGMTASPVVRKG 215
            +  + L     IV+DECHH   +  Y  I+ ++  HK   +   P+V G+TASP    G
Sbjct: 116 EEEHVELTAFSLIVVDECHHTHKDTVYNVILSQYLEHKLRQQWPLPQVLGLTASPGT-GG 174

Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275
            S        I +L + LD+    +  +T     +    + C+ YD  +    D  G L 
Sbjct: 175 NSKLQGAIEHILQLCANLDTWRI-MSPETYRPQLLEHRPQPCKKYDLCQRRSQDPFGDL- 232

Query: 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKI 335
                    + KL     +C  +M D  +    Q+ + H   L      G +     + +
Sbjct: 233 ---------IKKLMAQIHDC-PEMPDLSRDFGTQMYEQHVVELCQTAAEGGLQQRRVLAL 282

Query: 336 CLEKVLKAQEECEIYRQ----SSLQCKYFLEEVLHVIGSALPLAD---KIFLDFGFDYSK 388
            L +   A    +  R     +SL+  Y  E         LP       +F D   + ++
Sbjct: 283 HLRRYNDALLIHDTVRAVDALASLRGFYDRERTTKT--QILPTEHWLLALFYDHKDELTR 340

Query: 389 AVDLGYISTKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAY 447
               G  + KL  L Q+  + FG S     I+F     +A  +  ++++ P L  + +  
Sbjct: 341 LATHGPENPKLDMLEQILQTQFGGSANPRGIVFTRTRQSAHSLLLWLQQQPGLRGMDIRA 400

Query: 448 L----TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK 503
                 G+++    +T + Q+EV+  FR G +NLL AT V EEG+ +  CS V+R+ L  
Sbjct: 401 QMLIGAGNSSQCTHMTQRDQQEVIRKFRVGTLNLLVATSVAEEGLDIAKCSVVVRYGLLT 460

Query: 504 TVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
              S +Q+RGRAR   S +  +   G+ + R +L
Sbjct: 461 NEISMVQARGRARASQSVYSFVATEGSRELRREL 494


>gi|116180300|ref|XP_001219999.1| hypothetical protein CHGG_00778 [Chaetomium globosum CBS 148.51]
 gi|121791807|sp|Q2HG76.1|MPH1_CHAGB RecName: Full=ATP-dependent DNA helicase MPH1
 gi|88185075|gb|EAQ92543.1| hypothetical protein CHGG_00778 [Chaetomium globosum CBS 148.51]
          Length = 1134

 Score =  100 bits (248), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 120/520 (23%), Positives = 214/520 (41%), Gaps = 69/520 (13%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  + +     NT+  L TG GKT IA  ++ +  +  K    +  I+F+APT  L 
Sbjct: 188 RDYQFSIVKNGLFHNTLVALPTGLGKTFIAATIMLNYFRWTK----RSKIVFVAPTKPLA 243

Query: 107 HQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            QQ         + R        E        EW+S+          +  MTPQ L++ L
Sbjct: 244 SQQVQACLGIAGIPRSQATLLTGETPPVLRQGEWESKR---------LFFMTPQTLMNDL 294

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-VVRKGVSS 218
            K +     +  +V+DE H ATG++ Y K++ EF  +     ++  +TA+P    +GV  
Sbjct: 295 SKGYADPKSIVLLVVDEAHRATGDYAYVKVV-EFIRRFSKSIRILALTATPGSTVEGVQD 353

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
            +D  G IS +E          E+  ++  +V S     R  D   F  SD   ++   +
Sbjct: 354 IIDNLG-ISHVE-------IRTEESIDIRQYVHS-----RNIDTVTFDPSDEMHEVRGLF 400

Query: 279 SKFDASLSKLQGSQLNCYKDMDDKHKT---LRKQLSDY------HAK------------I 317
           SK    L     +Q N Y   D  + T   L K   ++      HA             I
Sbjct: 401 SKALKPLVDKLSAQ-NIYYGRDPMNLTTFGLLKSRQEWLAGPGGHANQGVKFMMMAVFSI 459

Query: 318 LYCLDELGLICAYEAVKICLEKV--LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLA 375
           L  L  L  +  +  +K     +   ++ EE +  + S L+ +   +E    + + +   
Sbjct: 460 LQSLAHLIKLLNFHGIKPFYNGLAEFRSSEEGKPGQGSKLKRQLLADESFQRMMALIERW 519

Query: 376 DKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435
            ++      +++    L Y+      L+  F+  G+++    I+F E   +A+ + R + 
Sbjct: 520 MRM-----EEFNGHPKLTYL---CETLVNHFIDAGENSNTRAIVFSEYRDSAEEIVRLLN 571

Query: 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSY 495
             P L   TV      +   + +  K Q E +E F+ G  N+L AT + EEG+ +     
Sbjct: 572 NQP-LIRATVFVGQADSKRSEGMKQKQQIETIEKFKNGGFNVLVATSIGEEGLDIGQVDL 630

Query: 496 VIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERGNLKQR 534
           ++ +D   +    +Q  GR  R+     +L+L +G  +++
Sbjct: 631 IVCYDASASPIRMLQRMGRTGRKRAGNIVLLLMKGKEEEK 670


>gi|328874050|gb|EGG22416.1| ATP-dependent RNA helicase [Dictyostelium fasciculatum]
          Length = 1558

 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 123/516 (23%), Positives = 225/516 (43%), Gaps = 66/516 (12%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           NF  R YQ  + + A  +NT+  L TG GKT IA +L+ +  +   ++     IIF+  T
Sbjct: 310 NFPKRDYQYNIIKHAIYQNTLVCLPTGLGKTFIASVLMLNYYRWFPTSK----IIFMVHT 365

Query: 103 VHLVHQQYDVIRVHTDF---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
             LV QQ D     T      + ++ G     +  S+ W+K+     V  +TP IL + +
Sbjct: 366 KPLVSQQIDAFYHTTGVPRSSIIQFTGTVNPTKR-SELWEKK----RVFFLTPHILNNDI 420

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSA 219
           R        +  IV+DE H AT N  Y + ++E   K   + ++ G+TASP  +K    A
Sbjct: 421 RDKRCDPSNISLIVMDESHRATKNAAYCQALREV-TKYTGQLRLVGLTASPGSKKDTIQA 479

Query: 220 M--DCEGQISEL--ESTLDSQVFTIEDKTEMEV--FVPSAKESCRFYDQSKFCGSDLKGK 273
           +  +C     ++  E++LD + +  + + ++EV    P  +E     ++ K+   D+  +
Sbjct: 480 VINNCLASYMDIRSENSLDIRPYVFKKQIDVEVVELSPQIQELVELINKCKWKPYDIIKR 539

Query: 274 LEVSWSKFDASLSKLQGSQLNCY---KDMDDKHKTLRKQLSDYHA--------KILYCLD 322
                 +F          +L+ Y     M ++  T   +  D+ +         +L C +
Sbjct: 540 SIPYLVEF---------QKLSIYYVINMMQNQKHTNNPRGPDWPSINNLGVLRALLDCSN 590

Query: 323 EL---GLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
           EL   GL+C    +KI  +   K  +E       +L   Y+    L V  +   + + ++
Sbjct: 591 ELIKHGLVCFKNKLKIFADNTKKCYKE-------TLDSTYW---KLLVSKTQKLIDENVY 640

Query: 380 LDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
            D      + ++  ++S+     + +F  +  S        V  II+       +K +PF
Sbjct: 641 HDKLIKLGQVIESHFVSSTTSTRVMVFTEYRDS--------VSEIISYLGNNPSIKVMPF 692

Query: 440 LTHLT---VAYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
           L       V    G+T +V +  L    Q  VL+ FR G+ N L +T + EEG+      
Sbjct: 693 LGQSNGKVVKGPKGTTRTVGSKGLDQSEQASVLKRFRDGEYNTLVSTSIGEEGLDFGEVD 752

Query: 495 YVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
            ++ +D P++ +  IQ  GR  R+   + +++L +G
Sbjct: 753 LIVCYDTPQSTTRNIQRMGRTGRKRQGRCVVILTQG 788


>gi|435850474|ref|YP_007312060.1| ERCC4-like helicase [Methanomethylovorans hollandica DSM 15978]
 gi|433661104|gb|AGB48530.1| ERCC4-like helicase [Methanomethylovorans hollandica DSM 15978]
          Length = 750

 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 133/526 (25%), Positives = 227/526 (43%), Gaps = 104/526 (19%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQL +   A    T+ VL TG GKT++++++I   A  ++  G K L+  L+PT  LV
Sbjct: 18  RLYQLDLAGRALYSPTLIVLPTGLGKTIVSLLVI---AARMEKLGGKALV--LSPTKPLV 72

Query: 107 HQQYDVIRVHTDFEVEEYYGAKG--VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            Q     +   +   E      G    +  +  W+       ++V TPQ++ + +    +
Sbjct: 73  EQHAAFFKKVMNMPEEHIITFTGSVTPQKRADLWKD----AKLIVSTPQVIENDIITKRI 128

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEG 224
           SL  VC I  DE H A GN+ YT I ++++  + N P   G+TASP            + 
Sbjct: 129 SLGDVCHITFDEAHRAVGNYAYTYIAEKYFENASN-PHCIGITASP---------GSTDE 178

Query: 225 QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLK---GKLEVSWSKF 281
           +ISE+   L   + ++  KTE                      SD+K    K E+ W K 
Sbjct: 179 KISEVCEAL--HIGSVAVKTE--------------------SDSDVKPYIHKKEIEWIKI 216

Query: 282 D--ASLSKLQGSQLNCYKDMDDKHKTLRK-QLSDYHAKILYCLDELGL------------ 326
           D    +S+++G      K M+++ K L +     ++ K +   D LG+            
Sbjct: 217 DLPKDMSEIKGL---LEKVMEERFKKLTELGFPVHNPKFVTKKDLLGMQKKLQGELRGAP 273

Query: 327 -ICAYEAVKICLEKVLKAQEECEIYRQSSLQC-KYFLEEVLHVIGSALPLADKIFLDFGF 384
               Y A+ I  E ++K     EI     ++  + ++E + H          + +   G 
Sbjct: 274 DSSVYAAISIVAE-IMKVGHAVEIIETQGMESLRKYMERLEH----------EAYSKSGS 322

Query: 385 DYSK--AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
             +K  A DL Y+   +H +    +   K  QV  I  V R IA +   R +    +   
Sbjct: 323 KAAKRLAEDL-YMRQAIHRIKDTDIEHPKLDQVRNI--VSRQIAGRPESRVIVFTNYRD- 378

Query: 443 LTVAYLTGSTTSVD-----------------ALTPKVQKEVLESFRGGKVNLLFATDVIE 485
            T   +T S  S++                  LT K Q  ++E F+ G  N+L AT V E
Sbjct: 379 -TADMVTASLGSMEDIYPVRFVGQSSKYKDKGLTQKQQVHIIEDFKKGTYNVLVATSVAE 437

Query: 486 EGMHVPNCSYVIRFD-LPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
           EG+ +P+   V+ ++ +P  + S IQ +GR AR+H  + ++++ +G
Sbjct: 438 EGLDIPSTDLVVFYEPIPSEIRS-IQRKGRTARKHAGRVVVLVTKG 482


>gi|171687943|ref|XP_001908912.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943933|emb|CAP69585.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1064

 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 128/528 (24%), Positives = 218/528 (41%), Gaps = 74/528 (14%)

Query: 42  INFIP-RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLA 100
           +N  P R YQ  +   A   NT+  L TG GKT IA  ++ +  +  K    +  I+F+A
Sbjct: 158 LNLGPIRDYQFTIVNSALFNNTLVALPTGLGKTFIAATVMLNFYRWTK----RGKIVFVA 213

Query: 101 PTVHLVHQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
           PT  L  QQ         + R        E   A    EW+++          +  MTPQ
Sbjct: 214 PTKPLASQQVKACLDVAGIPRSEATLLTGETAPALREAEWETKR---------LFFMTPQ 264

Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR 213
            L + L K +     V  +V+DE H ATG++ Y K++ EF  +     +V  +TA+P   
Sbjct: 265 TLQNDLSKGYADPKSVVLLVVDEAHRATGDYAYVKVI-EFLRRFSQSFRVLALTATPGSS 323

Query: 214 -KGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
            +GV + +D  G IS +E          E+  ++  +V S   +    D S         
Sbjct: 324 VEGVQNVIDNLG-ISHIE-------IRTEESLDIRQYVHSRDTNTIILDPSDEM------ 369

Query: 273 KLEVSWSKFDASLSKL--QGSQLNCYKDMDDKHKT---LRKQLSDY------HAK----- 316
            +EV    F  +L  L  + S  N Y   D    T   L K  SD+      HA      
Sbjct: 370 -MEVR-GLFSKALQPLVDKLSAQNIYFGRDPMSLTTYGLMKSRSDWLAGAGRHANQGLKF 427

Query: 317 -------ILYCLDELGLICAYEAVKICLEKVL--KAQEECEIYRQSSLQCKYFLEEVLHV 367
                  IL  L     +  +  +K     +L  +  EE +  + SS++ +   +E    
Sbjct: 428 AMFAVFSILQSLAHSIKLLNFHGIKPFYHNLLEFRNSEEEKGGKGSSMRRQVINDESFKK 487

Query: 368 IGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAA 427
           +   + + +K     GF     +D     T +H     F+  G+ +    I+F E   +A
Sbjct: 488 M---MTMIEKWMKLDGFSGHPKLDC-LCETLMHH----FMDAGEGSSTRVIVFSEYRDSA 539

Query: 428 KVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEG 487
           + + R +   P ++  TV      +   + +  K Q E +E F+ G+ N+L AT + EEG
Sbjct: 540 EEIVRVLNSKPLIS-ATVFVGQADSKRSEGMKQKQQIETIEKFKNGQYNVLVATSIGEEG 598

Query: 488 MHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERGNLKQR 534
           + +     ++ +D   +    +Q  GR  R+   + +L+L +G  +++
Sbjct: 599 LDIGQVDLIVCYDASSSPIRMLQRMGRTGRKRAGKIVLLLMKGKEQEK 646


>gi|340373955|ref|XP_003385505.1| PREDICTED: Fanconi anemia group M protein [Amphimedon
           queenslandica]
          Length = 1211

 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 136/542 (25%), Positives = 235/542 (43%), Gaps = 91/542 (16%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           N+  R YQ  +      +NT+  L TG GKT IA +++ +  +        K +IFLAPT
Sbjct: 81  NYPIRDYQFNIVNKCLFKNTLVSLPTGLGKTFIAAVVMYNFYRWYPC----KKVIFLAPT 136

Query: 103 VHLVHQQ----YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158
             LV QQ    Y+++ +  +  +E        D   +  W    N   V  +TPQ+L + 
Sbjct: 137 KPLVSQQVEACYNIMGIPQEDTIEMTGSVAPKDR--NHHW----NTKRVFYLTPQVLQND 190

Query: 159 LRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR-KGVS 217
           L +   + + +C IV DE H A GNH Y +++K+    ++   +V  ++A+P    K V 
Sbjct: 191 LNQETCNAEDICCIVFDEAHKALGNHSYCQVIKKLI-SANATVRVLALSATPGSDLKAVQ 249

Query: 218 SAMDCEGQISEL----ESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273
             +D   QI+ +    E +LD Q +    K E ++ VP  +E  +  +  K        K
Sbjct: 250 QVID-NLQIAHIELRCEDSLDIQQYNHGRKVE-KIVVPLDEEILQVRESFK--------K 299

Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKI------------LYCL 321
           + V++      LS+L    L    D+D   K    Q  +   K+            ++CL
Sbjct: 300 MLVNF------LSRLARQNLIYSTDVDRLGKFQMLQARESFRKLCPSGAQASAIEGIFCL 353

Query: 322 DELGLICAYEAVKICLEKVLKA------QEECEIYRQSSLQCKY---------FLE-EVL 365
                I  + A ++ L+  +++      +   E Y ++ ++  Y         FL+ ++ 
Sbjct: 354 ----CISLFHAYELLLQHGMRSFYVFLKESVSEGYSRAKMELSYSHDFKKMMSFLDSKMT 409

Query: 366 HVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSF-----GKSTQVLCIIF 420
             + ++L L   ++           D  Y   KL EL ++ LS      G  T+V+  IF
Sbjct: 410 EAVNTSLQLNSSMYCP---SVKPTADFFYSHPKLKELEKVVLSHFESSSGSPTKVM--IF 464

Query: 421 VE-----RIIAAKVVERF--VKKVPFLTHLTVAYLTGSTTS-VDALTPKVQKEVLESFRG 472
            +     R IA  +   F  ++ + F+ H +    TG   S     T K Q EV+  FR 
Sbjct: 465 SQYRESVREIADMLSRHFPVIQVMSFIGHSS----TGKNKSGGKGQTQKEQIEVIMKFRE 520

Query: 473 GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERGNL 531
           G  N L +T V EEG+ +     ++ FD  K+    IQ  GR  R+   + ++++ +G  
Sbjct: 521 GGYNTLVSTCVGEEGLDIGEVDLIVCFDAHKSPVRLIQRMGRTGRKRQGRIVVIVSQGKE 580

Query: 532 KQ 533
           +Q
Sbjct: 581 EQ 582


>gi|449668207|ref|XP_002154892.2| PREDICTED: uncharacterized protein LOC100214913 [Hydra
           magnipapillata]
          Length = 712

 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 96/179 (53%), Gaps = 12/179 (6%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQ++ F  A + N I VL+TG GKT+IA MLI  + +       +K+ + +   + L
Sbjct: 160 PRQYQIQAFIEALQSNLIVVLKTGFGKTLIASMLIGRMCEI----NPQKMGLMIVDRIPL 215

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKND--VLVMTPQILLDALRKAF 163
           V Q    I   T+  V    G     E  ++   K IN  D  VL++T     D +++ +
Sbjct: 216 VFQHAASISSDTNLRVVSLCG-----ENKTKHTIKRINDGDFDVLIITAGAFYDMVKQKY 270

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-DNKPKVFGMTASPVVRKGVSSAMD 221
           +  ++ C +VIDECHHATG H Y  +++ F      N+P++ G+TASP+  K ++ A D
Sbjct: 271 IDANMFCVVVIDECHHATGGHKYLDVLQIFTSMPLANQPRILGLTASPINAKTITQATD 329


>gi|302322070|gb|ADL16879.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322088|gb|ADL16888.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score = 99.0 bits (245), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/155 (39%), Positives = 81/155 (52%), Gaps = 28/155 (18%)

Query: 1093 SCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL 1152
            S +LFL YP+KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG    
Sbjct: 1    SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG---- 56

Query: 1153 RPVPCECGVDTLEVPLDG--KFFTQDTKVVVGKPCDM----------------GHRWMGS 1194
              VP     DT    +DG   FF ++ K V  +  D+                 +R + S
Sbjct: 57   --VPPVFDEDT----IDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSS 110

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1229
            KT+AD  EALIG YYV GG +AA ++MKW+GI  +
Sbjct: 111  KTLADVVEALIGVYYVEGGKVAANHLMKWIGIHVE 145


>gi|406866127|gb|EKD19167.1| putative ATP-dependent DNA helicase mph1 [Marssonina brunnea f. sp.
           'multigermtubi' MB_m1]
          Length = 1189

 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 122/522 (23%), Positives = 212/522 (40%), Gaps = 75/522 (14%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  +       N +  L TG GKT IA  ++ +  +  K       IIF+APT  LV
Sbjct: 262 RDYQYSIVRHGLFHNLLVALPTGLGKTFIAATIMYNFFRWTK----HAQIIFVAPTKPLV 317

Query: 107 HQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            QQ D       + R  T     E   A   +EWD++          V  MTPQ L + L
Sbjct: 318 AQQVDACFNIVGIPRSQTTMLTGEQPPALRAEEWDAKR---------VFFMTPQTLQNDL 368

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR-KGVSS 218
                    +  +V+DE H ATGN+ YT ++  F  + +N  +V  +TA+P    + V  
Sbjct: 369 VSGIADPKKIVLLVVDEAHRATGNYAYTTVVN-FLRRFNNSFRVLALTATPGASVEAVQE 427

Query: 219 AMDCEGQISEL----ESTLDSQVFTIEDKTEMEVFVPS-----AKESCRFYDQ---SKFC 266
            +D   QIS++    E ++D Q +  +   +  +  PS     AKE      Q   ++ C
Sbjct: 428 VID-NLQISKVEIRTEESIDIQQYVHQRNIDQVILDPSDEIIKAKELFSKALQPLVTQLC 486

Query: 267 GSD-LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDEL- 324
           G +    +  +S + F   L   +   ++  ++    HK +   L      + + +  L 
Sbjct: 487 GQNAYYNRDPMSLTTF-GMLQARKKWMMDQGRNASIPHKYMMNALFSILGSVAHSIKLLN 545

Query: 325 --GLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYF--LEEVLHVIGSALPLADKIFL 380
             G+   YEA+K        +++  + Y+    Q   F  + +++H+             
Sbjct: 546 FHGIGPFYEAIKEFQHGSEDSKKPSK-YKTQITQSPEFKKMMDIIHL------------- 591

Query: 381 DFGFDYSKAVDLGYISTKLHEL----LQLFLSFGKS--------TQVLCIIFVERIIAAK 428
                 S++ D      KL  L    L  F+  G+         +    I+F E   +A+
Sbjct: 592 ------SRSKDDSVGHPKLTHLCDTILNHFMDAGEGRLGEDAPPSSTRVIVFAEYRDSAE 645

Query: 429 VVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488
            + R + +   L   +V      +   + +    Q+E +  F+ GK N+L AT + EEG+
Sbjct: 646 EIARVLNRHGPLVRASVFVGQADSKRSEGMNQAKQQETINFFKTGKFNVLVATSIGEEGL 705

Query: 489 HVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
            +     ++ +D   +    +Q  GR  R+     +L+L RG
Sbjct: 706 DIGQVDLIVCYDASGSPIRMLQRMGRTGRKRAGHIVLLLMRG 747


>gi|346972329|gb|EGY15781.1| hypothetical protein VDAG_06945 [Verticillium dahliae VdLs.17]
          Length = 1187

 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 121/521 (23%), Positives = 215/521 (41%), Gaps = 69/521 (13%)

Query: 189 IMKEFYHKSDNK----PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE--- 241
           IM  FYH         P V G+TASP++R  +      EG +  LE TLDS   T     
Sbjct: 2   IMMNFYHPRKQSALSVPHVLGLTASPIMRSRL------EG-LEALEQTLDSVCVTPRLHR 54

Query: 242 DKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKD--- 298
           D     V  P+    C  + ++     + K     S  +   ++   Q   + C +D   
Sbjct: 55  DDLMTHVKRPTV---CYVHYETTDAKDEPKPVSISSLREACRNMDIRQDPYVICLRDKGT 111

Query: 299 ---------MDDKHKT-LRKQLSDYHAKILYCLDELGLICA-YEAVKICLEKVLKAQEEC 347
                    +   HKT  ++Q+  +  + L  L +LG   A Y   K+  + +   +   
Sbjct: 112 DRARRELIKVLTSHKTDSQQQMKSFFNQSLRVLRDLGPWAAEYYIWKVVTDFLAIIEARD 171

Query: 348 EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFL 407
               Q + + K +L  +L  I  + P    +                 S K+  L++ +L
Sbjct: 172 HRMNQRNTEEKQYLANILRQISISEPPVSML------------SAHNTSNKVMVLME-YL 218

Query: 408 SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT--HLTVAYLTGSTTSV-------DAL 458
           S   +   + IIFV+    A ++   ++  P     H +V  + G++T +       D  
Sbjct: 219 SSKATDGTVGIIFVKERSTAAMLAHVIESHPLTQNRHSSVGVVVGASTHLVRKKDMWDLS 278

Query: 459 TPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518
               + E L  FR G +NLL AT V+EEG+ VP C+ VI FD P+ + +++Q RGRAR+ 
Sbjct: 279 RAAHETEPLLQFRSGHLNLLIATSVLEEGIDVPACNLVICFDEPENLKAFVQRRGRARKK 338

Query: 519 NSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC----FLKACTYVKTKSYIV 574
           +S  +++L   +   ++       S  +   T   R+         ++A    K + Y+V
Sbjct: 339 DSSLVVLLPGTDHVPQD-----WESMEATMRTHYEREQREIQIMEQIEASESAKYEEYVV 393

Query: 575 ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE----AYECELTLPSNAPF 630
           EST A +  +++   +  +C  L   ++   +P +  +  +     +    + LPS  P 
Sbjct: 394 ESTNARLDFENAKAHLSNFCGQLSPGEFIDKRPEYIPRVVDNGVPPSLRVTVLLPSYVPA 453

Query: 631 QTIVGPTSRNKNLSKQL---VCLEACEKLHQVGALNDHLLP 668
                 + R+     Q       +A   L++ G +N+H+LP
Sbjct: 454 AVRHAESRRSWKSEHQASKDAAFQAYVALYKAGLVNEHMLP 494



 Score = 71.2 bits (173), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 96/223 (43%), Gaps = 45/223 (20%)

Query: 997  NTKKPQMHVHMPPELLVRVD-VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNF 1055
              KKP   V+  P    +VD +P+       L+P +   +E  ++A QL   +     NF
Sbjct: 720  TNKKPYARVYPAP--WAKVDTIPLDHAYFGALIPFISHIVEVRLVAEQLSSSL-LRDLNF 776

Query: 1056 HIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWA 1115
              PS L+L A++T G  E+ + ERLELLGDS+LK   + +             +A     
Sbjct: 777  SDPS-LVLAAISTKGSLEATNYERLELLGDSILKLCTTAN-------------AAALHGL 822

Query: 1116 VCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQ 1175
            V NS L +   D  L  ++    F  R W        RP+                 +  
Sbjct: 823  VSNSRLCRAALDAGLDKFVLTENFTCRTW--------RPI-----------------YVN 857

Query: 1176 DTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAAL 1218
            D      +  D G R M +KT+AD  EALIGA Y+ GGL  AL
Sbjct: 858  DMMEKGAR--DSGPRIMSTKTLADIVEALIGAAYIDGGLPKAL 898


>gi|346322509|gb|EGX92108.1| helicase C-terminal domain protein [Cordyceps militaris CM01]
          Length = 1094

 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 118/504 (23%), Positives = 202/504 (40%), Gaps = 46/504 (9%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  + + +   NT+  L TG GKT IA  ++ +  +  K    K  I+F+APT  LV
Sbjct: 183 RDYQFSIVKNSLFNNTLVALPTGLGKTFIAATVMLNYYRWTK----KGKIVFVAPTKPLV 238

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW---------QKEINKNDVLVMTPQILLD 157
            QQ D             Y   G+   D+            ++E  K  V  MTPQ LL+
Sbjct: 239 AQQIDAC-----------YSIAGIPRSDTTLLTGDIQPVLREEEWQKRRVFFMTPQTLLN 287

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR-KGV 216
            L   +     +C IVIDE H A G + Y K+ K    +     +V  +TA+P  + + V
Sbjct: 288 DLSHGYADPKSICLIVIDEAHRAVGEYAYAKVAK-LIRRFSKSFRVLALTATPGSKIETV 346

Query: 217 SSAMDCEGQIS----ELESTLDSQVFTIEDKTEMEVFVPSAKES--CRFYDQSKFCGSDL 270
              +D  G IS      E ++D + +  +   E+ V  PS + +  C  + ++     D 
Sbjct: 347 QEIIDNLG-ISHCEIRTEDSIDIRQYVHDRNIELVVLDPSDEMNLVCELFSEALKPLLDK 405

Query: 271 KGKLEVSWSKFDASLSKLQGSQLNCYKD-MDDKHKTLRKQLSDYHAKILYCLDELG---L 326
                + + K   S+S      L   K+ M  + K + + +      I   L  L     
Sbjct: 406 LSAQNIWYGKTPMSISTF--GLLQSQKEWMATRGKHVNQGVQFMMRAIFSVLTSLAHSIK 463

Query: 327 ICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
           +  +  +K   + ++  + + E   Q   + K  L E          +A  +  D    +
Sbjct: 464 LLNFHGIKPFYDNLVDFRSDQEDKGQKGSKYKRQLIEHPSFQDMMNKIASWMKRDGFVGH 523

Query: 387 SKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVA 446
            K   L         +L  F+  G+ +    I+F E   +A+ + R +     L   +V 
Sbjct: 524 PKQTALA------DAVLNHFMDRGEDSGTRVIVFSEYRDSAEDIVRLLNLHQPLVKASVF 577

Query: 447 YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
               +    + +    Q + +E FR G  N+L AT + EEG+ +     ++ +D   +  
Sbjct: 578 VGQAAGKRGEGMKQAQQIQTIEKFRSGHFNVLVATSIGEEGLDIGQVDLIVCYDSSSSPI 637

Query: 507 SYIQSRGR-ARQHNSQFILMLERG 529
             +Q  GR  R+     +L+L RG
Sbjct: 638 RMLQRMGRTGRKRAGNIVLLLMRG 661


>gi|334322694|ref|XP_001366879.2| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Monodelphis
           domestica]
          Length = 679

 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 131/508 (25%), Positives = 223/508 (43%), Gaps = 51/508 (10%)

Query: 49  YQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
           YQ +V   A + +N I  L TGAGKT  A  + K     +  +G K  +  L   VHLV 
Sbjct: 6   YQWEVILPALEGKNIIIWLPTGAGKTRAAAYVAKRHLDMM--DGAK--VAVLVNKVHLVS 61

Query: 108 QQYDVIR--VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL----RK 161
           Q     R  +   + +    G +G        +   +   D+++ T ++L  AL     +
Sbjct: 62  QHEKEFRQMLGPQWTIVTMSGDRG----PRAGFGHMVRCTDLVICTAELLRLALISTEEE 117

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK----SDNKPKVFGMTASPVVRKGVS 217
             + L     +++DECHH   +  Y  I+  +  +    +   P+V G+TASP    G S
Sbjct: 118 EHVELSAFSLLIVDECHHTQKDSVYNVILSHYLERKLQGATALPQVLGLTASPGT-GGAS 176

Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL--- 274
           +    +  I +L + LD+   +   +   E     +   C+ YD S+    D  G L   
Sbjct: 177 TLEGAKNHILQLCANLDTCHISSPQRY-YEQLEEHSSRPCKRYDLSQERNPDPFGDLLKK 235

Query: 275 ---EVSWSKFDASLSKLQGSQLNCYKDMDDKHKT-----LRKQLSDYHAKILYCLDELGL 326
              E+        LS+  GSQ    + ++  +K      L++++   H +     D L +
Sbjct: 236 LMDEIQDRLEMPELSRDFGSQNYEQQVVELSNKAAEQGHLQRRVFAMHLRRYN--DALLI 293

Query: 327 ICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
                AV   L  +     E ++ +   L  + +L ++      AL L   +  D  F+ 
Sbjct: 294 HGTVRAVD-ALTSLASFYTEEQMTKVGVLPAERWLLQLFDRHKEALAL---LASDAQFEN 349

Query: 387 SKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVA 446
            K  DL  I      L +LF S   S     IIF     +A+ +  ++++ P L  L + 
Sbjct: 350 PKLKDLEDI------LEELFSSPDPSR---GIIFARTRRSARALVLWLQEQPRLQRLGIK 400

Query: 447 --YLTGS--TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
              LTG+  ++ +  +T   Q+EV++ FR G +NLL AT V EEG+ +P C+ ++R+DL 
Sbjct: 401 AHVLTGAGNSSQITHMTQTEQREVIQRFREGTLNLLVATSVAEEGLDIPQCNMIVRYDLL 460

Query: 503 KTVSSYIQSRGRARQHNSQFILMLERGN 530
               S +Q+RGRAR   S +  +  +G+
Sbjct: 461 TNEISMMQARGRARASQSMYSFVAGQGS 488


>gi|50897085|dbj|BAD34723.1| Dicer-related RNase III protein Dcr2p [Tetrahymena thermophila]
          Length = 1838

 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 104/211 (49%), Gaps = 44/211 (20%)

Query: 69  GAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR---------VHTD- 118
           GAGKTMIA MLI    Q  K    KK IIFLA TV LV QQY  I+         +  D 
Sbjct: 1   GAGKTMIATMLINYFFQKQKKAPQKKKIIFLANTVQLVKQQYAEIKNNLQRISEMMENDK 60

Query: 119 -----------------FEVEEY-------YGAKG---VDEWDSQCWQKEINKNDVLVMT 151
                            FE E +       Y  K    ++ +  Q W   +   ++ VM 
Sbjct: 61  EISQILKFQEGINYRRIFEKENHIVKCHGSYKQKDNLQIETFTKQKWDYLLENYEIFVMI 120

Query: 152 PQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKSDNK----PKVFG 205
            Q+LL+ LR+ ++ ++ +  I+ DECHH   +HPY  I  EFY  HK  N+    PK++G
Sbjct: 121 GQVLLNGLRRGYIRIEDIEVIIYDECHHTRQDHPYCLIQYEFYHFHKRRNEQVQLPKIYG 180

Query: 206 MTASPVVRKGVSSAMDC-EGQISELESTLDS 235
           +TASPV+   V S  +  + +ISEL + LD+
Sbjct: 181 LTASPVLDIEVKSDSNIMKKKISELCTNLDA 211



 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
           Q E +E+FR  ++ ++ +T V EEG  +P+C+ VI F+    + S++Q +GRAR+ NS+F
Sbjct: 559 QSENIEAFRKKELQIILSTSVTEEGFDIPSCNLVISFNKISNLKSFVQIKGRARKENSKF 618

Query: 523 ILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVT 582
           I+M +    KQ  +    I S + +        P+    +       K  IV+ TGA + 
Sbjct: 619 IIMAKDKYQKQDYET--DIESYKDLIQQIKEIAPKVEKQEIEIRPNYKYKIVKETGAILN 676

Query: 583 TDSSVNLIHRYC-EMLPSDKYYTPKPIFKY-KSAEEAYECELTLPSNAPFQTIVGPTSRN 640
           T+ SVNL H Y  ++L S       P + Y +     + C++ +PS +  +T        
Sbjct: 677 TNWSVNLFHTYANQLLYSYDSNIKGPFYYYIEITNVGFICQIIVPSQSGLKTFCSNPQAQ 736

Query: 641 KNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESL 686
           K  +K+  C +A   L++   + D  L ++ +  +N+  S+K+ESL
Sbjct: 737 KEDAKKDACFQAVIILYRQYKIFDQYLRNISQKIQNSQ-SEKSESL 781



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 110/266 (41%), Gaps = 49/266 (18%)

Query: 1055 FHIPSSLILEALTTLGCC---ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            F +  S ++++LT+L      +  S+ER E LGD+VLK   S  ++  +PK  E  L   
Sbjct: 1302 FELQISELMKSLTSLEYAVNNKESSLERYEFLGDTVLKCLSSTQIYFEHPKSMEDHLHVH 1361

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEV----- 1166
            R+  + N  L ++   +K+  YI  S  +         LS   +  E  VD  E      
Sbjct: 1362 RTIIIQNRNLAQIAVKKKIFKYILSSKIET--------LSPIGIKYEIAVDDDEQNQFQK 1413

Query: 1167 ---PLDGKFFTQDTKVVVGKPCDMG------------------------HRWMGSKTIAD 1199
               P +     Q  K   G   D                          +R +  KT+AD
Sbjct: 1414 EKEPDEYDKADQRNKNKKGNEEDGDAENEEIEEQQQQNDIPNLLRLEPTYRHIKGKTLAD 1473

Query: 1200 CAEALIGAYY-VGGGLIAALYMMKWLGIDADLEVSL---VDDCITRASLRSYVPRINEIK 1255
              E++IG ++     L    Y++  L +    +++     D  + ++ L++  P   ++K
Sbjct: 1474 TLESIIGVFFQQKKDLNLCQYLLFSLQVLNKPDLTFNHSYDRSLQQSQLQN--PIYVQLK 1531

Query: 1256 DIESKIGYEFTVKFLLQEAITHASVQ 1281
            +IES +GY F    LL +A T  S++
Sbjct: 1532 EIESILGYTFQNINLLFQAFTLPSIE 1557


>gi|302826370|ref|XP_002994673.1| hypothetical protein SELMODRAFT_432577 [Selaginella moellendorffii]
 gi|300137177|gb|EFJ04260.1| hypothetical protein SELMODRAFT_432577 [Selaginella moellendorffii]
          Length = 176

 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 4/172 (2%)

Query: 1266 TVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMK 1325
            T+  L   A+ +           L++HLQH    L  +I ++V++  K          + 
Sbjct: 5    TLTDLRSAAVNNKWFARLVVRHGLHQHLQHGLVELDCEIRKFVQNV-KEKPDASCFEDLS 63

Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLG 1385
            APK LGDLLESI GA+ +DT  +L+ +WR+  P+LSP+VTP  L   P+  L+ELC   G
Sbjct: 64   APKVLGDLLESITGAIFVDTNFDLERLWRVVLPLLSPLVTPATLRFHPVHILMELCARKG 123

Query: 1386 YFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437
              V      + E    E+R+   +  LV   QE+ RK+AK  AA ++L  L+
Sbjct: 124  MKVS---FFRTEATTTEVRVTFGEESLVETSQEKPRKSAKIDAALKMLASLQ 172


>gi|449682783|ref|XP_002165718.2| PREDICTED: endoribonuclease Dicer-like [Hydra magnipapillata]
          Length = 1001

 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 128/527 (24%), Positives = 217/527 (41%), Gaps = 112/527 (21%)

Query: 174 IDECHHATGNHPYTKIMKEF--YHKSDNKPKVFGMTASPVVRKGVSSAMD------CEGQ 225
           +DECH+AT  H Y K+M+ F  Y KS++ P + G+TAS +  K      D       + +
Sbjct: 1   MDECHNATKKHSYVKLMEIFGNYPKSEH-PHILGLTASIINEKYTGVFNDQAIKSFLKNR 59

Query: 226 ISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASL 285
           I  LE  + S+  T  D      F     E  + + +    G  + G LE  +     S+
Sbjct: 60  ILGLERRMRSKCITCSDPQATTKFAAKPSEIVQTFKK----GYSVNGFLE--FVPVIESM 113

Query: 286 SKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV-LKAQ 344
            K+  ++L+ +  + ++ KT   +LS          D+L             EK+ L  +
Sbjct: 114 KKILDTKLDYFLCLANEKKTRVSRLS---------FDDL-----------LTEKLQLSER 153

Query: 345 EECEIYRQSSLQCKYFLEEV--LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHEL 402
             C I   +   CK  LE +  L V  +A  L  +I                   +LH  
Sbjct: 154 NACAISVDAMRYCKEILESLGPLCVFWAAQILIKQI-------------------ELH-- 192

Query: 403 LQLFLSFGKSTQVLCIIFVER----IIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVD-- 456
                          I+F +R    ++ +K++   V+K      L   ++ G     +  
Sbjct: 193 --------------AIVFTQRRCTAVVLSKLINYQVEKDETYKGLNSDFVLGHAFDSNIC 238

Query: 457 ----ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
               ++  + Q  +L +F+  K N+L +T V+EEG+ V  C+ V+RFD       Y QS+
Sbjct: 239 LVDGSMRSEKQNLILSNFKQDKFNVLVSTSVVEEGLDVRKCNLVVRFDGINNYREYAQSK 298

Query: 513 GRARQHNSQFILMLERG---NLKQRNKLFDII------RSERSVTDTALSRDPEACFLKA 563
           GRAR   S+FI+M E G   + K+++ +   I      + +  V  T    + E    + 
Sbjct: 299 GRARASGSKFIIMTEEGQEFDTKKQHIVMQQIEEILFEQCQNRVLPTDEEIEIEMMDEED 358

Query: 564 C---TYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYEC 620
                Y     Y        +T D++V+L++RYC  LPSD++    P F Y   +  +  
Sbjct: 359 EDLPVYFSHNGY----DAPRITKDNAVSLLYRYCSRLPSDQFCKTNPKFLYHVLKNQFCA 414

Query: 621 ELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
           E  LP N              +L +++  L + +   +VG LN  L+
Sbjct: 415 ECMLPLNC-------------SLPQRIYKLPSFDLFSRVGKLNIELI 448



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 91/200 (45%), Gaps = 44/200 (22%)

Query: 945  KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMH 1004
            KTFV Y+ EKY I  I P +PL+ +          ++F +        +S  NTKK  ++
Sbjct: 579  KTFVQYYLEKYNIE-ISPNKPLIDVISCSQQ----ISFTN-------CESNTNTKKKNVN 626

Query: 1005 VH-MPPELLVRVDV-PISVVKSLYLLPSVMQRLESLMLASQLREEI-------------- 1048
            +  + PEL  +V + P  +   L  LP ++   E   LA +L++ I              
Sbjct: 627  MEKLVPELCKKVSLFPADLHFQLPCLPRIIYFYEYYFLALELKDMIAEKIKINKSENQGR 686

Query: 1049 ---------------NCHSRNFHIPSSL-ILEALTTLGCCESFSMERLELLGDSVLKYAV 1092
                           N  + N   PS L I EALTT      F +ERLE+LGDS LK AV
Sbjct: 687  YQSSVLDLENLLQLKNYVTENVKSPSVLKIFEALTTRQASMPFDLERLEVLGDSFLKQAV 746

Query: 1093 SCHLFLTYPKKHEGQLSARR 1112
            S  +F   P  HEG+L+ RR
Sbjct: 747  SIFVFFQNPSFHEGKLTIRR 766



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 37/55 (67%)

Query: 1318 TDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP 1372
            T S    +APK LGDL ES+ GA+ +D+ L+L  VW+I+ P+L P++    ++LP
Sbjct: 888  TGSEEGYQAPKVLGDLFESVAGAIFLDSGLDLVTVWKIYYPLLKPVIDKYMIKLP 942


>gi|296202916|ref|XP_002748669.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 1
           [Callithrix jacchus]
          Length = 678

 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 135/526 (25%), Positives = 225/526 (42%), Gaps = 66/526 (12%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + +   + +  +G K  ++ L   VHL
Sbjct: 4   RPYQQEVITPALEGKNIIIWLPTGAGKTRAAAYVARQHLETV--DGAK--VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTDFE-----VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL- 159
           V Q  +      D       +    G +      ++C       +D+L+ T ++L  AL 
Sbjct: 60  VTQHGEEFSRMLDGRWTMTTLSGDMGPRAAFGHLARC-------HDLLICTAKLLQMALT 112

Query: 160 ---RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVV 212
               +  + L     IV+DECHH   +  Y  IM ++      ++   P+V G+TASP  
Sbjct: 113 SPEEEEHVELTAFSLIVVDECHHTHKDTVYNIIMSQYLELKLQRARPLPQVLGLTASP-- 170

Query: 213 RKGVSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269
             G   A   +G I+   +L + LD+   T   +          ++ C+ YD  +    D
Sbjct: 171 --GTGGASKLDGAINHVLQLCANLDTWCIT-SPQNCFPQLQEHNQQPCKQYDLCQRRSQD 227

Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
             G L          L KL   Q++ + +M +  +   KQ  +     L     L  +  
Sbjct: 228 PFGDL----------LKKLM-DQIHDHLEMPELSRDFGKQTYEQQVVKLSETAALAGLLE 276

Query: 330 YEAVKICLEKVLKAQEECEIYRQ----SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
                + L +   A    +  R     ++LQ  Y  E   H   + +  A++  L    D
Sbjct: 277 QRVYALHLRRYNDALLIHDTVRAVDALAALQNFYQRE---HATKTQILCAERWLLALFND 333

Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKV 437
           +     L +++T      KL E+L+  L   F  S     IIF     +A  +  ++++ 
Sbjct: 334 HKDM--LAHLATHGLENPKL-EMLEKILQKQFRSSDSPRGIIFTRTRQSAHSLLLWLQQQ 390

Query: 438 PFLTHLTV--AYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           P L  + +    L GS  S     +T K Q+EV+  FR G +NLL AT V EEG+ +P C
Sbjct: 391 PGLQTVDIRPQLLIGSGNSSQRTHMTQKDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQC 450

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           + V+R+ L     S +Q+RGRAR   S +  +  +G+ + + +L +
Sbjct: 451 NVVVRYGLLTNEISMVQARGRARAGESVYSFVATKGSRELQRELIN 496


>gi|74142314|dbj|BAE31919.1| unnamed protein product [Mus musculus]
          Length = 672

 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 134/526 (25%), Positives = 224/526 (42%), Gaps = 70/526 (13%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +     +  ++ L   VHL
Sbjct: 4   RPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVD----RGKVVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA- 162
           V Q  +  R   D  + V    G  G        +      +D+L+ T ++L  AL  + 
Sbjct: 60  VSQHAEEFRRMLDKHWTVTTLSGDMG----SRAGFGLMARSHDLLICTAELLQLALNSSE 115

Query: 163 ---FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH----KSDNKPKVFGMTASPVVRKG 215
               + L     IV+DECHH   +  Y  I+  +      K++  P+V G+TASP    G
Sbjct: 116 EDEHVELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I    +L + LD+    +  K      +    + C+ YD  +    D  G
Sbjct: 172 TGGATKLQGAIDHILQLCANLDT-CHIMSPKNCYSQLLMHNPKPCKQYDLCQRRAQDPFG 230

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD--ELGL---- 326
            L          + KL  +Q++   +M D  +    Q+ +    +  C D  E GL    
Sbjct: 231 DL----------IKKLM-NQIHQQLEMPDLKQQFGTQMYEQQV-VQLCKDAAEAGLQEQR 278

Query: 327 ICAYEAVK----ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
           + A    +    + +   ++A++  ++     LQ  Y  E       + +  A+   L  
Sbjct: 279 VYALHLRRYNDALFIHDTVRARDALDM-----LQDFYDRERT---TKTQMVRAESWLLKL 330

Query: 383 GFDYSKAVDLGYIST------KLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVK 435
            FD  K V LG ++       KL  L ++ L  FG       IIF      A  +  +++
Sbjct: 331 -FDDHKNV-LGQLAARGPENPKLEMLERILLKQFGSPGHTRGIIFTRTRQTASSLLLWLR 388

Query: 436 KVPFLTHLTVA----YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
           + P L  + +        G+T+    +T K Q+EV++ FR G ++LL AT V EEG+ + 
Sbjct: 389 QQPCLQTVGIKPQMLIGAGNTSQSTHMTQKDQQEVIQEFRDGILSLLVATSVAEEGLDIA 448

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
            C+ V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L
Sbjct: 449 QCNVVVRYGLLTNEISMVQARGRARAGQSVYSFLATEGSREMKREL 494


>gi|167046024|gb|ABZ10543.1| dicer-like protein C [Trichoplax adhaerens]
          Length = 358

 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 127/289 (43%), Gaps = 36/289 (12%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            +LEALT     +  S+ERLE LGDS LK+ ++ +LF+++PK HEGQL+   +  V N  L
Sbjct: 1    LLEALTLAEAEDDISLERLEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRNDNL 60

Query: 1122 HKLGTDRKLQGYIRDSAFDPRR---WVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTK 1178
             KLG    +  YI    F+  +   W+ PG   L                  K    D K
Sbjct: 61   LKLGKSTPICEYIIGKPFNLLKNEGWIPPGYKLLS----------------SKVKNLDEK 104

Query: 1179 VVVGKPCD--MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVS--- 1233
            V      D  + H+   SK+IAD  +A++ A  +      A Y + WL  D    ++   
Sbjct: 105  VTSDLDGDKAVTHQKFSSKSIADVMKAILAAILLEFDERHAKYFISWLDKDIKFTINASA 164

Query: 1234 ---LVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLY 1290
               L DD    ++  + +   N ++ +E  IGY F  K  +  A+TH+S    Y + ++ 
Sbjct: 165  ASLLPDDDNISSNEINKIYETNNLERLEKVIGYSFQNKLFMIRALTHSS----YHHHDIA 220

Query: 1291 KHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVG 1339
                     L   I +Y+ +        +S P  K P  L D  E+IV 
Sbjct: 221  IESNQKLEFLGDTILQYIIA----RHFFNSHPDAK-PAKLHDFQEAIVN 264


>gi|268325930|emb|CBH39518.1| putative ATP-dependent RNA helicase [uncultured archaeon]
          Length = 780

 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 138/514 (26%), Positives = 224/514 (43%), Gaps = 77/514 (14%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAV-MLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ+ +   A++ + + VL TG GKT IA+ +LI  +A        K  ++FLAPT  L
Sbjct: 23  RRYQIAIAREARKESLMVVLPTGLGKTTIALFVLINRLA--------KGKVLFLAPTRPL 74

Query: 106 VHQQY----DVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           V Q      DV+ +  D  V +      + +  ++ W    +   ++V TPQI+ + L  
Sbjct: 75  VEQHSAFLNDVLNI--DPSVIQTLTGNVLADKRAKLW----DDAKIIVSTPQIIENDLLS 128

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
             ++L  V  I+ DECH A GN+ Y  I  E Y +    P V GMTASP   K     + 
Sbjct: 129 NRINLSAVSLIIFDECHRAVGNYSYVYIA-EKYAEQAIAPLVLGMTASPGSDKEKIKEIC 187

Query: 222 CEGQISELEST--LDSQVFTIEDKTEME---VFVPSA-KESCRFYDQSKFCGSDLKGKLE 275
               + ++ES    D+ V     K E+E   + VP A K+  R  D              
Sbjct: 188 ISLGVKKVESRTEYDTDVAPYIHKKEIEWRTLDVPVAIKKQKRLLD-------------- 233

Query: 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKI 335
              +  D  + +LQ  +L   +    K  T +K+L +    I   L        Y+A+ +
Sbjct: 234 ---AILDERIGELQ--KLGYVRKKRGKDVT-KKELLELRTIITVQLASQKHADLYKALSL 287

Query: 336 CLEKVLKAQEECEIYRQSSLQC--KYF---LEEVLHVIGSALPLADKIFLDFGFDYSKAV 390
             E VLK +   E+     +    +YF     E L   GS    A ++  D  F  + ++
Sbjct: 288 QAE-VLKIKHAIELIETQGIFAVNRYFGRLKNEALSKEGS--KAAKRLLRDDRFVDAMSM 344

Query: 391 DLGYIST--KLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVV----------ERFVKKV 437
              Y     KL+ ++Q+    F  +     I+F      A+++          E  ++ V
Sbjct: 345 AASYEGEHPKLNAVIQILREEFRVNPNTRIIVFTNYRDTAEMIISGLQDRNSEEEGIRAV 404

Query: 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
            F+   T A   G       L  K Q E++  F+ G  N+L AT V EEG+ +P    V+
Sbjct: 405 KFIGQATKAEDKG-------LKQKEQVEIITKFKAGDYNVLVATSVAEEGLDIPATDLVL 457

Query: 498 RFD-LPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
            ++ +P  + S IQ +GR AR+   + I+++ +G
Sbjct: 458 FYEPIPSAIRS-IQRKGRTARKKVGKVIVLIAKG 490


>gi|390601319|gb|EIN10713.1| ribonuclease III [Punctularia strigosozonata HHB-11173 SS5]
          Length = 704

 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 140/314 (44%), Gaps = 37/314 (11%)

Query: 930  SSAESPFDGNTDDDSKTFVNYF---SEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGG 986
            S   SP D   +    +F+ Y    S +    +    QPLL++ +        VNF +  
Sbjct: 79   SPLSSPGDSKREAGFASFLEYCKVQSTRAAESITDYNQPLLQVTRLGGS----VNFLNPL 134

Query: 987  GSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLRE 1046
             SG       + K      ++ P+L  +  +P S+ K+   LPS+ +R++ ++L  +L  
Sbjct: 135  LSGPDESHKADAK------YLIPQLCPKFSIPASIFKTGLYLPSLARRIDEMLLVKELNA 188

Query: 1047 EINCHSRNFH--IPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKH 1104
            EI       H  +   L+LEA+T       F+ ERLELLGD+ LKY  S ++++T  +  
Sbjct: 189  EI------LHDLVGEQLLLEAITPPSASAEFNYERLELLGDAFLKYLASVYVYVTR-QGG 241

Query: 1105 EGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCE---CGV 1161
            EG L   R   + N  L        L  YI+ +AF  + W AP  + +   P +   CG 
Sbjct: 242  EGALHNARQKLIANDYLMDCAVRVGLPPYIQSAAFAYKYW-APHNVRVLARPTDDMTCGP 300

Query: 1162 DTLEVPLDG-KFFTQDTKVVVGKPCDMGHR-------WMGSKTIADCAEALIGAYYVGGG 1213
                   +G K   +  K   G P     +       W+G K IAD  EA+IGA Y+ GG
Sbjct: 301  SQ---DANGEKSIEEPKKEDAGIPSKRKAKFDPNTSQWLGHKAIADVVEAIIGAAYLNGG 357

Query: 1214 LIAALYMMKWLGID 1227
               AL  +  LGID
Sbjct: 358  SDNALQTVLDLGID 371


>gi|50261841|gb|AAT72473.1| AT1G01040 [Arabidopsis lyrata subsp. petraea]
          Length = 179

 Score = 97.8 bits (242), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 28/188 (14%)

Query: 1095 HLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRP 1154
            +LFL YP+KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG      
Sbjct: 2    YLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG------ 55

Query: 1155 VPCECGVDTLEVPLDG--KFFTQDTKVVVGKPCDM----------------GHRWMGSKT 1196
            VP     DT     DG   FF ++ K V  +  D+                 +R + SKT
Sbjct: 56   VPPVFDEDT----KDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKT 111

Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD 1256
            +AD  EALIG YYV GG +AA ++MKW+GI  + +   V+  +   ++   V +  +   
Sbjct: 112  LADVVEALIGVYYVEGGKVAANHLMKWIGIHVEDDPDEVEGTVKNVNVPESVLKSIDFVG 171

Query: 1257 IESKIGYE 1264
            +E  + +E
Sbjct: 172  LERALKFE 179


>gi|302321926|gb|ADL16807.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321928|gb|ADL16808.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321960|gb|ADL16824.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321972|gb|ADL16830.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321974|gb|ADL16831.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322094|gb|ADL16891.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322098|gb|ADL16893.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322102|gb|ADL16895.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322150|gb|ADL16919.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322172|gb|ADL16930.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322174|gb|ADL16931.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322182|gb|ADL16935.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322184|gb|ADL16936.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322186|gb|ADL16937.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322190|gb|ADL16939.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322192|gb|ADL16940.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322194|gb|ADL16941.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322196|gb|ADL16942.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322198|gb|ADL16943.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score = 97.8 bits (242), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 62/155 (40%), Positives = 80/155 (51%), Gaps = 28/155 (18%)

Query: 1093 SCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL 1152
            S +LFL YP+KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG    
Sbjct: 1    SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG---- 56

Query: 1153 RPVPCECGVDTLEVPLDG--KFFTQDTKVVVGKPCDM----------------GHRWMGS 1194
              VP     DT     DG   FF ++ K V  +  D+                 +R + S
Sbjct: 57   --VPPVFDEDT----KDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSS 110

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1229
            KT+AD  EALIG YYV GG IAA ++MKW+GI  +
Sbjct: 111  KTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVE 145


>gi|302322012|gb|ADL16850.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322072|gb|ADL16880.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score = 97.4 bits (241), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 61/155 (39%), Positives = 80/155 (51%), Gaps = 28/155 (18%)

Query: 1093 SCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL 1152
            S +LFL YP+KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG    
Sbjct: 1    SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG---- 56

Query: 1153 RPVPCECGVDTLEVPLDG--KFFTQDTKVVVGKPCDM----------------GHRWMGS 1194
              VP     DT     DG   FF ++ K V  +  D+                 +R + S
Sbjct: 57   --VPPVFDEDT----XDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSS 110

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1229
            KT+AD  EALIG YYV GG +AA ++MKW+GI  +
Sbjct: 111  KTLADVVEALIGVYYVEGGKVAANHLMKWIGIHVE 145


>gi|337284763|ref|YP_004624237.1| Hef nuclease [Pyrococcus yayanosii CH1]
 gi|334900697|gb|AEH24965.1| Hef nuclease [Pyrococcus yayanosii CH1]
          Length = 751

 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 130/511 (25%), Positives = 220/511 (43%), Gaps = 70/511 (13%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR+YQ  ++   K RN + VL TG GKT+IA M+I D     + + +   ++ LAPT  L
Sbjct: 10  PRLYQEVIYARCKERNCLIVLPTGLGKTLIA-MMIADY----RLSKYGGKVLMLAPTKPL 64

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGV--DEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
           V Q  +  R   +   E+     G    E  ++ W     +  V+V TPQ + + L    
Sbjct: 65  VLQHAESFRRLFNLPPEKVVALTGEMGPEERARAW----ARAKVIVATPQTVENDLLTGR 120

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
           ++L+ V  +V DE H A GN+ Y  I KE+  ++ N          P+V    +S    E
Sbjct: 121 INLEDVSLLVFDEAHRAVGNYAYVFIAKEYRRQARN----------PLVIGLTASPGSSE 170

Query: 224 GQISELESTLDSQVFTI--EDKTEMEVFVPSAK------ESCRFYDQSKFCGSDL----- 270
            +I E+   L  +   +  ED  ++  +V   K      E    Y + +    D+     
Sbjct: 171 EKIMEVIRNLGIEHVEVRTEDSPDVRPYVHGIKFEWVKVELPPLYKEVRKLLRDMLQDAL 230

Query: 271 ----KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGL 326
               +  L  S S        L+  Q+   +     H   R  L  YHA  L     + L
Sbjct: 231 RPLAEAGLIDSPSPDLPKKEVLRAGQIIGEEIAKGNHDLGRLLL--YHAMALKLHHAIEL 288

Query: 327 I--CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF 384
           +      A+++ L+K+ +  +   I     L     +++ + ++  A         + G 
Sbjct: 289 LETQGLSALRVYLKKLYEEAKAGRIKASRELFRDMRMKKAISLLVQAR--------ELGL 340

Query: 385 DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHL 443
           D+ K +D      KL ELL+  L   ++++V  I+F   R  A K+VE   +       L
Sbjct: 341 DHPK-ID------KLKELLREQLDKKRASKV--IVFTNYRETAKKLVEELSR-----MGL 386

Query: 444 TVAYLTG--STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD- 500
                 G  S      ++ + QK +L++F  G  N+L AT V EEG+ VP    V+ ++ 
Sbjct: 387 KARRFVGQASREGDRGMSQREQKAILDAFARGDFNVLVATSVGEEGLDVPEVDMVVFYEP 446

Query: 501 LPKTVSSYIQSRGRARQHN-SQFILMLERGN 530
           +P  + S +Q RGR  +H   + ++++ RG 
Sbjct: 447 VPSAIRS-VQRRGRTGRHKPGRVVILMARGT 476


>gi|13194586|gb|AAK15474.1| unknown [Mus musculus]
 gi|13194588|gb|AAK15475.1| unknown [Mus musculus]
 gi|20809730|gb|AAH29209.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Mus musculus]
 gi|148670596|gb|EDL02543.1| DNA segment, Chr 11, Lothar Hennighausen 2, expressed, isoform
           CRA_b [Mus musculus]
          Length = 678

 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 134/526 (25%), Positives = 223/526 (42%), Gaps = 70/526 (13%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +        ++ L   VHL
Sbjct: 4   RPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGK----VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA- 162
           V Q  +  R   D  + V    G  G        +      +D+L+ T ++L  AL  + 
Sbjct: 60  VSQHAEEFRRMLDKHWTVTTLSGDMG----SRAGFGLMARSHDLLICTAELLQLALNSSE 115

Query: 163 ---FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH----KSDNKPKVFGMTASPVVRKG 215
               + L     IV+DECHH   +  Y  I+  +      K++  P+V G+TASP    G
Sbjct: 116 EDEHVELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I    +L + LD+    +  K      +    + C+ YD  +    D  G
Sbjct: 172 TGGATKLQGAIDHILQLCANLDT-CHIMSPKNCYSQLLMHNPKPCKQYDLCQRRAQDPFG 230

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD--ELGL---- 326
            L          + KL  +Q++   +M D  +    Q+ +    +  C D  E GL    
Sbjct: 231 DL----------IKKLM-NQIHQQLEMPDLKQQFGTQMYEQQV-VQLCKDAAEAGLQEQR 278

Query: 327 ICAYEAVK----ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
           + A    +    + +   ++A++  ++     LQ  Y  E       + +  A+   L  
Sbjct: 279 VYALHLRRYNDALFIHDTVRARDALDM-----LQDFYDRERT---TKTQMVRAESWLLKL 330

Query: 383 GFDYSKAVDLGYIST------KLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVK 435
            FD  K V LG ++       KL  L ++ L  FG       IIF      A  +  +++
Sbjct: 331 -FDDHKNV-LGQLAARGPENPKLEMLERILLKQFGSPGHTRGIIFTRTRQTASSLLLWLR 388

Query: 436 KVPFLTHLTVA----YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
           + P L  + +        G+T+    +T K Q+EV++ FR G ++LL AT V EEG+ + 
Sbjct: 389 QQPCLQTVGIKPQMLIGAGNTSQSTHMTQKDQQEVIQEFRDGILSLLVATSVAEEGLDIA 448

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
            C+ V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L
Sbjct: 449 QCNVVVRYGLLTNEISMVQARGRARAGQSVYSFLATEGSREMKREL 494


>gi|70608133|ref|NP_084426.2| probable ATP-dependent RNA helicase DHX58 [Mus musculus]
 gi|341940441|sp|Q99J87.2|DHX58_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DHX58; AltName:
           Full=Probable ATP-dependent helicase LGP2; AltName:
           Full=Protein D11Lgp2; AltName: Full=RIG-I-like receptor
           3; Short=RLR-3; AltName: Full=RIG-I-like receptor Lgp2;
           Short=RLR
          Length = 678

 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 134/526 (25%), Positives = 223/526 (42%), Gaps = 70/526 (13%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +        ++ L   VHL
Sbjct: 4   RPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGK----VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA- 162
           V Q  +  R   D  + V    G  G        +      +D+L+ T ++L  AL  + 
Sbjct: 60  VSQHAEEFRRMLDKHWTVTTLSGDMG----SRAGFGLMARSHDLLICTAELLQLALNSSE 115

Query: 163 ---FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH----KSDNKPKVFGMTASPVVRKG 215
               + L     IV+DECHH   +  Y  I+  +      K++  P+V G+TASP    G
Sbjct: 116 EDEHVELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I    +L + LD+    +  K      +    + C+ YD  +    D  G
Sbjct: 172 TGGATKLQGAIDHILQLCANLDT-CHIMSPKNCYSQLLMHNPKPCKQYDLCQRRAQDPFG 230

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD--ELGL---- 326
            L          + KL  +Q++   +M D  +    Q+ +    +  C D  E GL    
Sbjct: 231 DL----------IKKLM-NQIHQQLEMPDLKQQFGTQMYEQQV-VQLCKDAAEAGLQEQR 278

Query: 327 ICAYEAVK----ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
           + A    +    + +   ++A++  ++     LQ  Y  E       + +  A+   L  
Sbjct: 279 VYALHLRRYNDALFIHDTVRARDALDM-----LQDFYDRERT---TKTQMVRAESWLLKL 330

Query: 383 GFDYSKAVDLGYIST------KLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVK 435
            FD  K V LG ++       KL  L ++ L  FG       IIF      A  +  +++
Sbjct: 331 -FDDHKNV-LGQLAARGPENPKLEMLERILLKQFGSPGHTRGIIFTRTRQTASSLLLWLR 388

Query: 436 KVPFLTHLTVA----YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
           + P L  + +        G+T+    +T K Q+EV++ FR G ++LL AT V EEG+ + 
Sbjct: 389 QQPCLQTVGIKPQMLIGAGNTSQSTHMTQKDQQEVIQEFRDGILSLLVATSVAEEGLDIA 448

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
            C+ V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L
Sbjct: 449 QCNVVVRYGLLTNEISMVQARGRARAGQSVYSFLATEGSREMKREL 494


>gi|410981129|ref|XP_003996925.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Felis catus]
          Length = 667

 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 224/509 (44%), Gaps = 63/509 (12%)

Query: 60  RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD- 118
           RN I  L TGAGKT  A  + K   + +  +G K  ++ L   VHLV Q  +      D 
Sbjct: 7   RNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHLVTQHCEEFSRMLDK 62

Query: 119 -FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL----RKAFLSLDIVCFIV 173
            + +    G  G        +      +D+L+ T ++L  AL     +  + L+    +V
Sbjct: 63  RWAITTLSGDMG----PRAGFGHLARSHDLLICTAELLQMALTSPEEEEHVELNAFSLLV 118

Query: 174 IDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGVSSAMDCEGQIS-- 227
           +DECHH   +  Y  I+  +      +    P+V G+TASP    G   A   +G I   
Sbjct: 119 VDECHHTHKDTVYNIILSRYLQHKLQRTRPLPQVLGLTASP----GTGGASTLDGAIDHI 174

Query: 228 -ELESTLDS-QVFTIED-KTEMEVFVPSAKESCRFYD------QSKFCGSDLKGKLEVSW 278
            +L + LD+ ++ + ++ + +++   P   + C+ Y+      Q  F G  LK  +E   
Sbjct: 175 LQLCANLDTWRIMSPQNYRPQLQEHSP---QPCKQYNLCHRRSQDPF-GDMLKELMERIH 230

Query: 279 SKFDA-SLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL 337
           ++ D   LS+  G+Q    + ++         L       L+       +  +  V+  +
Sbjct: 231 NRLDMPELSRDFGTQTYEQQVVELSQDAAEAGLQQRRVYALHLRRYNDALLIHHTVR-AV 289

Query: 338 EKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY-SKAVDLGYIS 396
           + +   +E  +  R +  Q       VLH        A++  L    DY ++  DL   S
Sbjct: 290 DALASLREFYDRERATKTQ-------VLH--------AERWLLAQFNDYKNELADLATRS 334

Query: 397 T---KLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTV-AYL--- 448
               KL  L Q+    FG S     I+F +   +A  +  ++++ P L  L + A L   
Sbjct: 335 PENPKLEMLEQILQEQFGSSDGRRGILFTQTRQSAHSLLLWLQQQPGLQILDIRADLLIG 394

Query: 449 TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
            G+ +    +T + Q+EV+  FR G +NLL AT V EEG+ +P C+ V+R+ L     S 
Sbjct: 395 AGNNSQNTHMTQRDQQEVIRKFRAGILNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISM 454

Query: 509 IQSRGRARQHNSQFILMLERGNLKQRNKL 537
           +Q+RGRAR   S +  +  +G+ + R +L
Sbjct: 455 VQARGRARAGQSVYSFVATQGSRELRREL 483


>gi|149408122|ref|NP_077024.2| probable ATP-dependent RNA helicase DHX58 [Homo sapiens]
 gi|50401123|sp|Q96C10.1|DHX58_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DHX58; AltName:
           Full=Probable ATP-dependent helicase LGP2; AltName:
           Full=Protein D11Lgp2 homolog; AltName: Full=RIG-I-like
           receptor 3; Short=RLR-3; AltName: Full=RIG-I-like
           receptor LGP2; Short=RLR
 gi|15928965|gb|AAH14949.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Homo sapiens]
 gi|119581201|gb|EAW60797.1| likely ortholog of mouse D11lgp2, isoform CRA_b [Homo sapiens]
 gi|119581202|gb|EAW60798.1| likely ortholog of mouse D11lgp2, isoform CRA_b [Homo sapiens]
 gi|325463123|gb|ADZ15332.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [synthetic construct]
          Length = 678

 Score = 97.4 bits (241), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 132/528 (25%), Positives = 233/528 (44%), Gaps = 70/528 (13%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +  +G K  ++ L   VHL
Sbjct: 4   RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +  R   D  + V    G  G        +      +D+L+ T ++L  AL    
Sbjct: 60  VTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTSPE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKG 215
            +  + L +   IV+DECHH   +  Y  IM ++      ++   P+V G+TASP    G
Sbjct: 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I+   +L + LD+    +  +         +++ C+ Y+       D  G
Sbjct: 172 TGGASKLDGAINHVLQLCANLDTWCI-MSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            L          L KL   Q++ + +M +  +    Q+  Y  +++  L E   +   + 
Sbjct: 231 DL----------LKKLM-DQIHDHLEMPELSRKFGTQM--YEQQVVK-LSEAAALAGLQE 276

Query: 333 VKICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            ++    + +  +   I+         ++LQ  Y  E   HV  + +  A++  L   FD
Sbjct: 277 QRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE---HVTKTQILCAERRLLAL-FD 332

Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAK------VVE 431
             K  +L +++T      KL E+L+  L   F  S     IIF     +A         +
Sbjct: 333 DRKN-ELAHLATHGPENPKL-EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390

Query: 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
           + ++ V     L +    G+++    +T + Q+EV++ F+ G +NLL AT V EEG+ +P
Sbjct: 391 QGLQTVDIRAQLLIG--AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           +C+ V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L +
Sbjct: 449 HCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELIN 496


>gi|297273051|ref|XP_002800519.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like isoform 2
           [Macaca mulatta]
          Length = 661

 Score = 97.4 bits (241), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 128/524 (24%), Positives = 228/524 (43%), Gaps = 79/524 (15%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +    F++++         
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKFRRML--------- 54

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL----RK 161
              ++ V  +  D      +G        ++C       +D+L+ T ++L  AL     +
Sbjct: 55  -DGRWTVTTLSGDMGPRAGFGHL------ARC-------HDLLICTAELLQMALTSPEEE 100

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKGVS 217
             + L     IV+DECHH   +  Y  IM  +      ++   P+V G+TASP    G  
Sbjct: 101 EHVELTAFSLIVVDECHHTHKDTVYNVIMSRYLELKLQRARPLPQVLGLTASP----GTG 156

Query: 218 SAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
            A   +G I    +L + LD+    +  +         +++ C+ Y+       D  G L
Sbjct: 157 GASKLDGAIDHVLQLCANLDTWCI-MSPQNYRPRLQEHSQQPCKQYNLCHRRSQDPFGDL 215

Query: 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334
                     L KL   Q++ + +M +  +    Q+  Y  +++  L E   +   +  +
Sbjct: 216 ----------LKKLM-DQVHDHLEMPELSRNFGTQM--YEQQVVK-LSEAAALAGLQEQR 261

Query: 335 ICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
           +    + +  +   I+         ++LQ  Y  E   HV  + +  A++  L   FD  
Sbjct: 262 VYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE---HVTKTQILCAERRLLAL-FDGH 317

Query: 388 KAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
           K V L +++T      KL E+L+  L   F  S     IIF     +A  +  ++++ P 
Sbjct: 318 KNV-LAHLATHGPENPKL-EMLEKILQRQFRSSDSPRGIIFTRTRQSAHSLLLWLQQQPG 375

Query: 440 LTHLTV-AYL---TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSY 495
           L  + + A L    G+++    +T + Q+EV+  FR G +NLL AT V EEG+ +P C+ 
Sbjct: 376 LQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQCNV 435

Query: 496 VIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L +
Sbjct: 436 VVRYGLLTNEISMVQARGRARADQSVYSFVATEGSRELKRELIN 479


>gi|312284067|ref|NP_001186061.1| probable ATP-dependent RNA helicase DHX58 [Sus scrofa]
 gi|229473596|gb|ACQ73327.1| LGP2 [Sus scrofa]
          Length = 681

 Score = 97.1 bits (240), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 127/523 (24%), Positives = 226/523 (43%), Gaps = 63/523 (12%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + RN I  L TGAGKT  A  + K   + +  +G K  ++ L   VHL
Sbjct: 4   RPYQWEVIMPALEGRNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +      D  + +    G  G        +      +D+L+ T ++L  AL    
Sbjct: 60  VTQHCEEFSRMLDRRWAITTLSGDMG----PRAGFGHLARSHDLLICTAELLQKALTSEE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF----YHKSDNKPKVFGMTASPVVRKG 215
            +  + L++   +V+DECHH   +  Y  I+ ++    + ++   P+V G+TASP    G
Sbjct: 116 EEEHVELNVFSLLVVDECHHTHKDTVYNIILSQYLKHKFQRTKPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I    +L + LD+        +  +     +++ C+ YD       D   
Sbjct: 172 TGRASTLDGAIDHILQLCANLDTWRIMSPQNSRSQ-LQEHSRQPCKQYDLCHQRAQD--- 227

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYH-AKILYCLDELGL----I 327
                   F A L KL   +++ + +M +  +    Q  +    ++     E GL    +
Sbjct: 228 -------PFGAKLKKLM-DKIHRHLEMPELRRDFGTQTYEQQVVELSQAAAEAGLQERRV 279

Query: 328 CAYEAVK----ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
            A    +    + +   ++A +     R    + +    ++L      L L D    D  
Sbjct: 280 YALHLRRYNDALLIHDTVRAVDALATLRDFHTRERATKTQILQAERWLLALFD----DHK 335

Query: 384 FDYSKAVDLGYISTKLH---ELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL 440
            + ++    G  + KL    E+LQ      KS +   IIF     +A  +  ++++ P L
Sbjct: 336 NELARLAADGPENPKLEVLKEILQKQFKGPKSPR--GIIFTRTRQSAHSLLLWLQQQPSL 393

Query: 441 THLTV--AYLTGS-----TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
             + +    L G+     +T +  +T + Q+EV++ FR G +NLL AT V EEG+ +P C
Sbjct: 394 QTVDIRAQLLIGAGNSSQSTPMTQMTQRDQQEVIQKFRTGALNLLVATSVAEEGLDIPQC 453

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           + V+R+ L     S +Q+RGRAR   S +  +  +G+ + R +
Sbjct: 454 NVVVRYGLLTNEISMVQARGRARASQSVYSFVAAQGSRELRRE 496


>gi|148670597|gb|EDL02544.1| DNA segment, Chr 11, Lothar Hennighausen 2, expressed, isoform
           CRA_c [Mus musculus]
          Length = 533

 Score = 97.1 bits (240), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 134/526 (25%), Positives = 223/526 (42%), Gaps = 70/526 (13%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +        ++ L   VHL
Sbjct: 4   RPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGK----VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA- 162
           V Q  +  R   D  + V    G  G        +      +D+L+ T ++L  AL  + 
Sbjct: 60  VSQHAEEFRRMLDKHWTVTTLSGDMG----SRAGFGLMARSHDLLICTAELLQLALNSSE 115

Query: 163 ---FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH----KSDNKPKVFGMTASPVVRKG 215
               + L     IV+DECHH   +  Y  I+  +      K++  P+V G+TASP    G
Sbjct: 116 EDEHVELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I    +L + LD+    +  K      +    + C+ YD  +    D  G
Sbjct: 172 TGGATKLQGAIDHILQLCANLDT-CHIMSPKNCYSQLLMHNPKPCKQYDLCQRRAQDPFG 230

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD--ELGL---- 326
            L          + KL  +Q++   +M D  +    Q+ +    +  C D  E GL    
Sbjct: 231 DL----------IKKLM-NQIHQQLEMPDLKQQFGTQMYEQQV-VQLCKDAAEAGLQEQR 278

Query: 327 ICAYEAVK----ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
           + A    +    + +   ++A++  ++     LQ  Y  E       + +  A+   L  
Sbjct: 279 VYALHLRRYNDALFIHDTVRARDALDM-----LQDFYDRERT---TKTQMVRAESWLLKL 330

Query: 383 GFDYSKAVDLGYIST------KLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVK 435
            FD  K V LG ++       KL  L ++ L  FG       IIF      A  +  +++
Sbjct: 331 -FDDHKNV-LGQLAARGPENPKLEMLERILLKQFGSPGHTRGIIFTRTRQTASSLLLWLR 388

Query: 436 KVPFLTHLTVA----YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
           + P L  + +        G+T+    +T K Q+EV++ FR G ++LL AT V EEG+ + 
Sbjct: 389 QQPCLQTVGIKPQMLIGAGNTSQSTHMTQKDQQEVIQEFRDGILSLLVATSVAEEGLDIA 448

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
            C+ V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L
Sbjct: 449 QCNVVVRYGLLTNEISMVQARGRARAGQSVYSFLATEGSREMKREL 494


>gi|302321846|gb|ADL16767.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321848|gb|ADL16768.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321850|gb|ADL16769.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321854|gb|ADL16771.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321858|gb|ADL16773.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321866|gb|ADL16777.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321878|gb|ADL16783.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321880|gb|ADL16784.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321882|gb|ADL16785.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321884|gb|ADL16786.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321886|gb|ADL16787.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321888|gb|ADL16788.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321890|gb|ADL16789.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321892|gb|ADL16790.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321894|gb|ADL16791.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321896|gb|ADL16792.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321898|gb|ADL16793.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321900|gb|ADL16794.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321902|gb|ADL16795.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321904|gb|ADL16796.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321906|gb|ADL16797.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321908|gb|ADL16798.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321910|gb|ADL16799.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321912|gb|ADL16800.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321914|gb|ADL16801.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321916|gb|ADL16802.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321918|gb|ADL16803.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321920|gb|ADL16804.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321922|gb|ADL16805.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321924|gb|ADL16806.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321930|gb|ADL16809.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321932|gb|ADL16810.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321934|gb|ADL16811.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321936|gb|ADL16812.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321938|gb|ADL16813.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321940|gb|ADL16814.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321942|gb|ADL16815.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321944|gb|ADL16816.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321946|gb|ADL16817.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321948|gb|ADL16818.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321950|gb|ADL16819.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321952|gb|ADL16820.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321954|gb|ADL16821.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321956|gb|ADL16822.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321958|gb|ADL16823.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321966|gb|ADL16827.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321968|gb|ADL16828.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321976|gb|ADL16832.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321978|gb|ADL16833.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321980|gb|ADL16834.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321982|gb|ADL16835.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321984|gb|ADL16836.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321986|gb|ADL16837.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321988|gb|ADL16838.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321990|gb|ADL16839.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321994|gb|ADL16841.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321996|gb|ADL16842.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321998|gb|ADL16843.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322000|gb|ADL16844.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322002|gb|ADL16845.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322004|gb|ADL16846.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322006|gb|ADL16847.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322008|gb|ADL16848.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322010|gb|ADL16849.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322014|gb|ADL16851.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322016|gb|ADL16852.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322018|gb|ADL16853.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322020|gb|ADL16854.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322022|gb|ADL16855.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322024|gb|ADL16856.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322026|gb|ADL16857.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322028|gb|ADL16858.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322030|gb|ADL16859.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322032|gb|ADL16860.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322034|gb|ADL16861.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322036|gb|ADL16862.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322038|gb|ADL16863.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322040|gb|ADL16864.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322042|gb|ADL16865.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322044|gb|ADL16866.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322046|gb|ADL16867.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322050|gb|ADL16869.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322060|gb|ADL16874.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322062|gb|ADL16875.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322064|gb|ADL16876.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322066|gb|ADL16877.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322068|gb|ADL16878.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322074|gb|ADL16881.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322076|gb|ADL16882.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322078|gb|ADL16883.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322080|gb|ADL16884.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322082|gb|ADL16885.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322084|gb|ADL16886.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322086|gb|ADL16887.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322090|gb|ADL16889.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322092|gb|ADL16890.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322104|gb|ADL16896.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322106|gb|ADL16897.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322108|gb|ADL16898.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322110|gb|ADL16899.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322112|gb|ADL16900.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322114|gb|ADL16901.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322116|gb|ADL16902.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322118|gb|ADL16903.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322120|gb|ADL16904.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322122|gb|ADL16905.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322124|gb|ADL16906.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322126|gb|ADL16907.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322128|gb|ADL16908.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322132|gb|ADL16910.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322134|gb|ADL16911.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322136|gb|ADL16912.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322138|gb|ADL16913.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322140|gb|ADL16914.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322142|gb|ADL16915.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322144|gb|ADL16916.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322146|gb|ADL16917.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322148|gb|ADL16918.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322152|gb|ADL16920.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322154|gb|ADL16921.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322156|gb|ADL16922.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322158|gb|ADL16923.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322160|gb|ADL16924.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322162|gb|ADL16925.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322164|gb|ADL16926.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322166|gb|ADL16927.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322168|gb|ADL16928.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322170|gb|ADL16929.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322178|gb|ADL16933.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322204|gb|ADL16946.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322206|gb|ADL16947.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322212|gb|ADL16950.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score = 97.1 bits (240), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 61/155 (39%), Positives = 80/155 (51%), Gaps = 28/155 (18%)

Query: 1093 SCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL 1152
            S +LFL YP+KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG    
Sbjct: 1    SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG---- 56

Query: 1153 RPVPCECGVDTLEVPLDG--KFFTQDTKVVVGKPCDM----------------GHRWMGS 1194
              VP     DT     DG   FF ++ K V  +  D+                 +R + S
Sbjct: 57   --VPPVFDEDT----KDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSS 110

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1229
            KT+AD  EALIG YYV GG +AA ++MKW+GI  +
Sbjct: 111  KTLADVVEALIGVYYVEGGKVAANHLMKWIGIHVE 145


>gi|307111602|gb|EFN59836.1| hypothetical protein CHLNCDRAFT_133597 [Chlorella variabilis]
          Length = 1000

 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 123/512 (24%), Positives = 202/512 (39%), Gaps = 53/512 (10%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQL   + A   NT+  L TG GKT+IA +++ + A+          ++F+APT  LV
Sbjct: 469 RKYQLACIQTALLTNTLVCLPTGLGKTLIAAVVMHNFARWFPEG----KVVFVAPTRPLV 524

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDS--QCWQKEINKNDVLVMTPQILLDALRKAFL 164
            QQ +            +    G    D+  Q WQ  I +      TPQ     L+    
Sbjct: 525 AQQMEACHSFMGMSKSGFCEITGGSRPDARKQEWQGGIRR--AFFCTPQTFWKDLQNGIC 582

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEG 224
             + V  +V+DECH ATGN    K +     +   K ++ G++A+P    G   A    G
Sbjct: 583 PYERVVCLVVDECHRATGNQDIVKAV-SLMRQHKCKFRILGLSATP----GADGAKVQAG 637

Query: 225 QISELES----TLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280
           + S        T+ ++V  +     +E  + SA E       ++     L+  L      
Sbjct: 638 RASLPRRIPLLTVAAKVTRLVMLEVIEKLMISAIEFLELVYPTRET-VPLRAVLLRLIHN 696

Query: 281 FDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV 340
           F ASL   +    N   +    H     Q ++        + + GL  A+  +  C + +
Sbjct: 697 FIASLVAKKEYYGNPNPETVSSHALRTSQKAN---SFNPAIAQAGL--AWAGLGTCAQAL 751

Query: 341 LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLH 400
           ++ ++  ++Y     Q   +L + ++         D +F  F      AV  G  S KL 
Sbjct: 752 VQVRDLLDVY--GVAQALSYLNQKINDNYMKSLRDDSMFCSFQQSLEAAVRNGGSSPKLI 809

Query: 401 ELLQLFLSF--------GKSTQVLCIIF------VERIIAA-KVVERFVKKVPFLTHLTV 445
           +L+Q+            G S +V  I+F      V  I AA +  E  +    F+     
Sbjct: 810 KLVQILRQHFSAQGGEEGASGRV--IVFTNFRDGVAEIRAALQAHEPLITARSFIGQSNS 867

Query: 446 AYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS----------- 494
               G   S   +T K QKEVL+ FR G  N L AT + EEG+ +P  S           
Sbjct: 868 GKSRGGKASGGGMTQKEQKEVLKGFRSGAFNCLVATCIGEEGLDIPQASCHKDACLAGVD 927

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
            ++ +D   + +   Q  GR  +H    ++ +
Sbjct: 928 LIVCYDATSSPTRSTQRMGRTGRHKEGRVVYI 959


>gi|402078056|gb|EJT73405.1| ATP-dependent DNA helicase MPH1 [Gaeumannomyces graminis var.
           tritici R3-111a-1]
          Length = 1076

 Score = 96.7 bits (239), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 124/520 (23%), Positives = 212/520 (40%), Gaps = 78/520 (15%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  + +     NT+  L TG GKT IA  ++ +  +  ++      I+F+APT  L 
Sbjct: 162 RDYQFSIVKNGLFSNTLVALPTGLGKTFIAATVMLNYYRWTRN----AKIVFVAPTKPLA 217

Query: 107 HQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            QQ +       + R        E   A   +EW  +C +       +  MTPQ L++ L
Sbjct: 218 SQQVEACLSIAGIPRSAATLLTGEVKPALREEEW--ECRR-------LFFMTPQTLMNDL 268

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-VVRKGVSS 218
            K +     +  +V+DE H ATG++ Y K++ +F  +     +V  +TA+P    +GV +
Sbjct: 269 SKGYADPKKIVLLVVDEAHRATGDYAYVKVI-DFIRRFSKSFRVLALTATPGSTVEGVQA 327

Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278
            +D  G            V  +E +TE  + + S   S R  D+     SD   +L   +
Sbjct: 328 VIDNLG------------VSHVEIRTEESIDIRSYVHS-REIDRVVLEPSDEMLRLMELF 374

Query: 279 SKFDASL-SKLQGSQLNCYKDMDDKHKT---LRKQLSDY------HAK------------ 316
           S+    L SK+  SQ N Y   D    T   L K   D+      HA             
Sbjct: 375 SQALKPLTSKI--SQANIYYGRDPTSITTFGLMKARQDWFNGPGRHANQGTKMMLMAIFT 432

Query: 317 ILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFL------EEVLHVIGS 370
           IL  L     +  +  ++   E +   + E E   Q   + K  +      +E++ +  +
Sbjct: 433 ILQGLAHAIKLLNFHGIRPFYENLAAFRAETEEKGQKGSKYKRQILADAGFQEMMEIASN 492

Query: 371 ALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430
            L L D +       + K   L         LL  F+  G+ +    I+F E   +A+ +
Sbjct: 493 WLKLPDFV------GHPKLTHL------CDTLLNHFMDAGEGSNTRVIVFSEYRDSAEEI 540

Query: 431 ERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490
            R +     + + ++      +   + +  K Q E +E FR G  N+L AT + EEG+ +
Sbjct: 541 VRVLNMHKPMVNASLFVGQADSKKSEGMKQKQQIETIEKFRSGTFNVLVATSIGEEGLDI 600

Query: 491 PNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
                +I +D   +    +Q  GR  R+   +  L+L +G
Sbjct: 601 GQVDLIICYDASSSPIRMLQRMGRTGRKRAGKITLLLMKG 640


>gi|395826384|ref|XP_003786398.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 3
           [Otolemur garnettii]
          Length = 578

 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 131/526 (24%), Positives = 224/526 (42%), Gaps = 73/526 (13%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +               VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDR-----------AKVHL 52

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +  R   D  + +    G  G        +      +D+L+ T ++L  A+    
Sbjct: 53  VTQHGEEFRRMLDGRWSMVTLSGDMG----SRAGFGHLARSHDLLICTAELLQTAMTSPE 108

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKG 215
            +  + L     +V+DECHH   +  Y  I+  +      ++ + P+V G+TASP    G
Sbjct: 109 EEEHVELTAFSLLVVDECHHTHKDTVYNVILSRYLEHKLQRAPSLPQVLGLTASP----G 164

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD------QSKFC 266
              A   +G I+   +L + LD+    +  ++         ++ C+ YD      Q  F 
Sbjct: 165 TGGASKLDGAINHILQLCANLDTWCI-MSPQSSCSQLHEYNQQPCKQYDICHRRSQDPF- 222

Query: 267 GSDLKGKLEVSWSKFDA-SLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELG 325
           G  LK  ++    + D   LS+  G Q+   + +D         L +     L+      
Sbjct: 223 GDLLKKLMDQVHDRLDMPELSRDFGMQIYEQQMVDLSRDAAENGLQERRVYALHLRRYND 282

Query: 326 LICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            +  ++ V+  ++ +   Q+     R +  Q  Y               A++  L   FD
Sbjct: 283 ALLIHDTVR-AVDALATLQDFYNRERTTKTQVLY---------------AERWLLAL-FD 325

Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKV 437
            +K   L +++T      KL E+L+  L   FGK      IIF     +A  +  ++++ 
Sbjct: 326 DNKNA-LAHLATHGPENPKL-EVLERILQEQFGKPNSPRGIIFTRTRQSAHSLLLWLQQQ 383

Query: 438 PFLTHLTV--AYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           P L  + +    L GS  S     +T + Q+EV++ FR G +NLL +T V EEGM +P+C
Sbjct: 384 PGLQMVDIKAQMLIGSRNSGQRAHMTQRNQQEVIQKFRIGILNLLVSTSVAEEGMDIPHC 443

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           + V+R+ L     S +Q+RGRAR   S +  +   G+ + R +L +
Sbjct: 444 NVVVRYGLLTNEISMVQARGRARASQSVYSFVAAEGSRELRRELIN 489


>gi|395532380|ref|XP_003768248.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Sarcophilus
           harrisii]
          Length = 675

 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 126/534 (23%), Positives = 228/534 (42%), Gaps = 87/534 (16%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TG GKT  A  + +     +     K  +  L   VHL
Sbjct: 4   RPYQWEVILPALEGKNIIMWLPTGTGKTRAAAYVARRHLGMVD----KAKVAVLVNKVHL 59

Query: 106 VHQ-----------QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
           V Q           +++++ +  D      +G                  ND+++ T ++
Sbjct: 60  VTQHKKEFSQMLGPKWNIVTMSGDGGFRAGFGYLA-------------RSNDLVICTAEL 106

Query: 155 LLDAL----RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK----SDNKPKVFGM 206
              AL    ++  + L     +++DECHH   +  Y  I+  +  +    S N P++ G+
Sbjct: 107 FRLALISTEKEEQVDLSAFSLLIVDECHHTQKDSVYNVILSYYLERKLQGSKNLPQILGL 166

Query: 207 TASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTE-MEVFVPSAKESCRFYDQSK 264
           TASP    G S+    +  I +L + LD  ++ + +   E +E   P   + C+ YD S+
Sbjct: 167 TASPGT-GGASTLEGAKNHILQLCANLDICRIMSPQKYYEQLEELSP---QPCKRYDLSQ 222

Query: 265 FCGSD------------LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSD 312
               D            ++ KL++     D    + +   +   K   ++ +  ++  + 
Sbjct: 223 ERSLDPFGDLLKKLMDKIQDKLKMPQLGRDFGSQRYEQQVVELSKAAAEQGRLQQRVFAL 282

Query: 313 YHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL 372
           +  K    L   G + A +A+                   +SL+ K++ EE +  +G  L
Sbjct: 283 HLRKYNDALLIHGTVRAVDAL-------------------TSLR-KFYAEERVRKVG-VL 321

Query: 373 PLADKIFLDFGFDYSKAVDLGYIST-----KLHELLQLFL-SFGKSTQVLCIIFVERIIA 426
           P A+   L    ++ +A+ L    T     KL +L Q+    F        I+F +   +
Sbjct: 322 P-AEGWLLQLFEEHQEALALLASDTHSENPKLEDLEQILEEQFSAPGPSRGIVFTQTRQS 380

Query: 427 AKVVERFVKKVPFLTHLTV--AYLTGS--TTSVDALTPKVQKEVLESFRGGKVNLLFATD 482
           A  +  ++++ P L  L +    LTG+   + +  +T   Q EV++ FR G VNLL AT 
Sbjct: 381 AHALLLWLQERPTLRQLGIKAQVLTGAGHNSQITHMTQTEQLEVIQRFRAGTVNLLVATS 440

Query: 483 VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           V EEG+ +P C+ V+R+ L     S +Q+RGRAR   S +  +  +G+ + R +
Sbjct: 441 VAEEGLDIPQCNVVVRYGLLTNEISMMQARGRARASQSVYSFVASQGSRELRRE 494


>gi|302322200|gb|ADL16944.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322210|gb|ADL16949.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322214|gb|ADL16951.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 78/152 (51%), Gaps = 28/152 (18%)

Query: 1093 SCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL 1152
            S +LFL YP+KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG    
Sbjct: 1    SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG---- 56

Query: 1153 RPVPCECGVDTLEVPLDG--KFFTQDTKVVVGKPCDM----------------GHRWMGS 1194
              VP     DT     DG   FF ++ K V  +  D+                 +R + S
Sbjct: 57   --VPPVFDEDT----KDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSS 110

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1226
            KT+AD  EALI  YYV GG +AA ++MKW+GI
Sbjct: 111  KTLADVVEALICVYYVEGGKVAANHLMKWIGI 142


>gi|288931017|ref|YP_003435077.1| helicase [Ferroglobus placidus DSM 10642]
 gi|288893265|gb|ADC64802.1| helicase domain protein [Ferroglobus placidus DSM 10642]
          Length = 761

 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 143/524 (27%), Positives = 225/524 (42%), Gaps = 65/524 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQL +   A  +NT+ VL TG GKT++A+++I     A + +     ++FLAPT  LV
Sbjct: 17  RSYQLALAASALLKNTLVVLPTGLGKTVVALLVI-----ASRLHKLDGKVLFLAPTKPLV 71

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            Q    ++   +   EE     G  E   +  Q+   K  V+V TPQ++ + +    L+L
Sbjct: 72  EQHAFFLKRTLNINEEEIVSFTG--EIPPEKRQRMYEKARVIVSTPQVIENDIISGRLTL 129

Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQI 226
                 V DE H A GN+ Y  I + F  +S N P +  +TASP          D E +I
Sbjct: 130 SDFVLAVFDEAHRAVGNYSYVFIARRFVEESKN-PLILAITASP--------GSDPE-RI 179

Query: 227 SELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLS 286
            E+   L   +  IE +TE +   P         D  K+         ++ W K D    
Sbjct: 180 KEVVKNL--FIENIEIRTEYD---P---------DVRKYIAEK-----KIEWVKVDMP-E 219

Query: 287 KLQGSQLNCYKDMDDKHKTLRKQLSDYH---AKILYCLDEL--------GLICAYEAVKI 335
           +L+ ++    K ++ + K L +   D      K L  L EL        G    YEA  I
Sbjct: 220 ELEKAKEAFEKVIEIRLKRLERLGFDVDFSSKKELLTLQELVQAQAVESGDQVYYEASSI 279

Query: 336 CLEKVLKAQEECEIYRQSSLQ-CKYFLEEVL---HVIGSALP---LADKIFLDFGFDYSK 388
             E VLK     E+     ++  K +L+ +L      GS      L D +F +     +K
Sbjct: 280 LAE-VLKVYHAVELIETQGVEAAKKYLKRLLKEGRSRGSKAAKNLLEDPVFREGIVRIAK 338

Query: 389 AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAY 447
             D      KL E+L+    F K+     I+F   R  A K+++   +K P        +
Sbjct: 339 IKDEHPKVNKLMEILE--EQFEKNPDSRVIVFTNFRDTAEKLLKIVSQKFP-----ASKF 391

Query: 448 LTGSTTSVDA-LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
           +  +    DA ++ K Q  VLE FR G V +L AT V EEG+ +P    V+ ++   +  
Sbjct: 392 IGQAKREEDAGMSQKEQLRVLEMFRRGDVKVLIATSVGEEGLDIPETDLVVFYEAVPSEI 451

Query: 507 SYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDT 550
             IQ +GR  +     I++L     +     +  +R E+ + DT
Sbjct: 452 RAIQRKGRTGRGREGRIVVLITKGTRDEAYYYASLRKEKLMYDT 495


>gi|328774208|gb|EGF84245.1| hypothetical protein BATDEDRAFT_9192, partial [Batrachochytrium
           dendrobatidis JAM81]
          Length = 581

 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 134/544 (24%), Positives = 228/544 (41%), Gaps = 61/544 (11%)

Query: 21  PDMGSSGHDHAVDGPSSST--NSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVM 78
           P   SS + H +D     T    IN+  R YQ  +   A   NT+  L TG GKT +A +
Sbjct: 10  PSAVSSLNTHVIDEKELETWIYPINYPLRDYQFNIISRALFANTLVALPTGLGKTFLAAV 69

Query: 79  LIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ----YDVIRVHTDFEVEEYYGAKGVDEWD 134
           ++ +  +          IIF+APT  LV QQ    + +  +H D   E     K   E  
Sbjct: 70  VMYNYYRWFPEGK----IIFMAPTKPLVAQQIEACFKITGIHQDMTYELTGTTKS--ETR 123

Query: 135 SQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194
              W+++     V  +TPQ++ + LR A  S D V  +V+DE H ATGN+ Y ++++E  
Sbjct: 124 IGIWKQK----RVFFLTPQVMQNDLRSAACSADKVVLLVVDEAHRATGNYAYCEVIREL- 178

Query: 195 HKSDNKPKVFGMTASP-----VVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVF 249
            K+ +  +V  ++A+P      V+  V++ +    +I   E + D + F    + E E+ 
Sbjct: 179 SKASSPFRVLALSATPGSDMKAVQHVVNNLLIQHIEI-RTEDSFDIRPFIFSRQIE-EII 236

Query: 250 VPSAKESCRFYDQSKFCGSDLKGKL---EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTL 306
           V    +  R  D      S    +L    V + K   ++S+   + L+  K   D HK  
Sbjct: 237 VSLTPQITRIVDAFAKVVSIFLVRLCNHGVFYEKDPRAVSRY--ALLDARKRWIDNHKDA 294

Query: 307 -RKQLSDYHAKILYC---------LDELGLICAYEAVKICLEKV---LKAQEECEIYRQS 353
            R Q+S        C         L   G+   Y+ V   L +      ++   E+   S
Sbjct: 295 NRAQISSIMNDSGICMAMCAALQQLQTYGIRSFYDTVSSFLAEAPSEKNSRSRSELVENS 354

Query: 354 SLQCKYFLEEVLHVIGSALPLADKIFLDFG----FDYSKAVDLGYISTKLHELLQLFLSF 409
            L  K  +  V  +  S          DF      D   AV L + S +L +      S 
Sbjct: 355 DL--KALMIHVNEITKSP---------DFSSHPKLDRLVAVVLEHFSKELPDNGDEGSSD 403

Query: 410 GKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTV--AYLTGSTTSVDALTPKVQKEV 466
              ++   +IF + R    ++V +  +  PFL  ++      + S       T K Q EV
Sbjct: 404 ASLSKSRVMIFSQYRDNVDEIVTKLNQHHPFLRVMSFIGQSSSKSGKKGKGFTQKEQLEV 463

Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILM 525
           +  F+ G  N+L +T + EEG+ + +   ++ +D   +    +Q  GR  R+   + +++
Sbjct: 464 ISKFQSGNYNVLVSTSIGEEGLDIGDVDLIVCYDAQTSPVRMLQRMGRTGRKRQGRIVVI 523

Query: 526 LERG 529
           L +G
Sbjct: 524 LSKG 527


>gi|402900290|ref|XP_003913111.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Papio anubis]
          Length = 578

 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 135/526 (25%), Positives = 229/526 (43%), Gaps = 73/526 (13%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +  +G K         VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK---------VHL 52

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +  R   D  + V    G  G        +      +D+L+ T ++L  AL    
Sbjct: 53  VTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTSPE 108

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKG 215
            +  + L     IV+DECHH   +  Y  IM  +      ++   P+V G+TASP    G
Sbjct: 109 EEEHVELTAFSLIVVDECHHTHKDTVYNVIMSRYLELKLQRARPLPQVLGLTASP----G 164

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I    +L + LD+    +  +         +++ C+ Y+       D  G
Sbjct: 165 TGGASKLDGAIDHVLQLCANLDTWCI-MSPQNYRPRLQEHSQQPCKQYNLCHRRSQDPFG 223

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            L          L KL   Q++ + +M +  +    Q+  Y  +++  L E   +   + 
Sbjct: 224 DL----------LKKLM-DQVHDHLEMPELSRNFGTQM--YEQQVVK-LSEAAALAGLQE 269

Query: 333 VKICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            ++    + +  +   I+         ++LQ  Y  E   HV  + +  A++  L   FD
Sbjct: 270 QRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE---HVTKTQILCAERRLLAL-FD 325

Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKV 437
             K V L +++T      KL E+L+  L   F  S     IIF     +A  +  ++++ 
Sbjct: 326 GHKNV-LAHLATHGPENPKL-EMLEKILQRQFRSSDSPRGIIFTRTRQSAHSLLLWLQQQ 383

Query: 438 PFLTHLTV-AYL---TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           P L  + + A L    G+++    +T + Q+EV+  FR G +NLL AT V EEG+ +P C
Sbjct: 384 PGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQC 443

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           + V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L +
Sbjct: 444 NVVVRYGLLTNEISMVQARGRARADQSVYSFVATEGSRELKRELIN 489


>gi|213405465|ref|XP_002173504.1| helicase C-terminal domain-containing protein [Schizosaccharomyces
           japonicus yFS275]
 gi|212001551|gb|EEB07211.1| helicase C-terminal domain-containing protein [Schizosaccharomyces
           japonicus yFS275]
          Length = 794

 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 133/550 (24%), Positives = 228/550 (41%), Gaps = 97/550 (17%)

Query: 30  HAVDGPSSST--NSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI 87
           H +D  ++ T    IN   R YQ  + + A  +N +  L TG GKT IA +L+ +  +  
Sbjct: 57  HQLDTEAAKTWIYPINIELRDYQFNIVKKALTQNVLVALPTGLGKTFIAAVLMMNYLRWF 116

Query: 88  KSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVD-----EWDSQ---CWQ 139
                +  ++FLAPT  LV QQ           +E  Y   G+      E   Q     +
Sbjct: 117 P----QSYVVFLAPTKPLVTQQ-----------MEACYKIAGIPKSCTAELSGQVPVATR 161

Query: 140 KEINK-NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198
            E+ K   V  +TPQ L + L++       +  +V+DE H + GN+ Y ++++  Y  + 
Sbjct: 162 AELYKEKKVFFLTPQTLQNDLKRGICDRMKISCLVVDEAHRSLGNYSYVEVVRLIYMGNR 221

Query: 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS-QVFTIEDKTEMEV----FVPSA 253
           N  +V  +TA+P              +I  ++S +DS  +  IE + E  +    +V   
Sbjct: 222 N-FRVLALTATP------------GSKIDTVQSIVDSLHISCIEIRNENSIDIAQYVYKK 268

Query: 254 KESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDD---------KHK 304
              C   D +     D++ +       F    +KL    L   +D+ D         K K
Sbjct: 269 NVDCYPVDLNPLL-CDIRDRYCELLEPF---FTKLTKGNLYWVRDIKDITAFTLLQAKQK 324

Query: 305 TLRKQLSDY----HAKILYCLDE-------LGLICAYEAVKICLEKVLKAQEECEIYRQS 353
            L      Y       +L   D        LGL+  Y  +     K+ + QEEC   R  
Sbjct: 325 FLATAGQSYTNNQRWDVLNTFDALVTFAYPLGLLL-YHGITPFYSKLKEIQEECSKGRAG 383

Query: 354 SLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVD----LGYISTKLHELLQLFLS- 408
                 + + VLH         D+ F+D   + S  +     LG+   KL  L ++ L+ 
Sbjct: 384 ------YKKRVLH---------DQKFIDLMSEMSCYISQPDFLGH--PKLEHLQEIVLNH 426

Query: 409 FGKSTQVLCIIFVERIIAAKVVERFV-KKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVL 467
           FG++     ++F E   +A+ + R + +  P  T  +  ++  S      ++ K+Q E +
Sbjct: 427 FGENKDTRIMVFAEIRSSAEEIHRLLSRNSP--TVRSAIFVGQSAKKAGGMSQKLQNETV 484

Query: 468 ESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILML 526
           + F  G++N L AT + EEG+ +     +I +D   +    +Q  GR  R+      ++L
Sbjct: 485 QKFHEGEINTLIATSIGEEGLDIGEVDLIICYDASSSPIRMLQRMGRTGRKREGNVSMLL 544

Query: 527 ERGNLKQRNK 536
            RG  K+ NK
Sbjct: 545 TRG--KEENK 552


>gi|426348251|ref|XP_004041751.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Gorilla
           gorilla gorilla]
          Length = 678

 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 132/528 (25%), Positives = 232/528 (43%), Gaps = 70/528 (13%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +  +G K  ++ L   VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +  R   D  + +    G  G        +      +D+L+ T ++L  AL    
Sbjct: 60  VTQHGEEFRRVLDGRWTMTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTSPE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKG 215
            +  + L     IV+DECHH   +  Y  IM ++      ++   P+V G+TASP    G
Sbjct: 116 EEEHVELTAFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I+   +L + LD+    +  +         +++ C+ Y+       D  G
Sbjct: 172 TGGASKLDGAINHVLQLCANLDTWCI-MSPQNYCPQLQEHSQQPCKQYNLCHRRSQDPFG 230

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            L          L KL   Q++ + +M +  +    Q+  Y  +++  L E   +   + 
Sbjct: 231 DL----------LKKLM-DQIHDHLEMPELSRNFGTQM--YEQQVVK-LSEAAALAGLQE 276

Query: 333 VKICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            ++    + +  +   I+         ++LQ  Y  E   HV  + +  A++  L   FD
Sbjct: 277 QRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE---HVTKTQILCAERRLLAL-FD 332

Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAK------VVE 431
             K V L +++T      KL E+L+  L   F  S     IIF     +A         +
Sbjct: 333 DRKNV-LAHLATHGPENPKL-EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390

Query: 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
           + ++ V     L +    G+++    +T + Q+EV++ F+ G +NLL AT V EEG+ +P
Sbjct: 391 QGLQTVDIRAQLLIG--AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           +C+ V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L +
Sbjct: 449 HCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELIN 496


>gi|403304472|ref|XP_003942820.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 2
           [Saimiri boliviensis boliviensis]
          Length = 578

 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 228/532 (42%), Gaps = 85/532 (15%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + +   + +  +G K         VHL
Sbjct: 4   RPYQREVITPALEGKNIIIWLPTGAGKTRAAAYVARQHLETV--DGAK---------VHL 52

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVD-EWDSQCWQKEINK----------NDVLVMTPQI 154
           V Q             EE+  ++ +D  W       ++            +D+L+ T Q+
Sbjct: 53  VTQHG-----------EEF--SRMLDGRWTMTTLSGDVGPRAGFGHLARCHDLLICTAQL 99

Query: 155 LLDAL----RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGM 206
           L  AL     +  + L     IV+DECHH   +  Y  IM  +      ++   P+V G+
Sbjct: 100 LQMALTSPEEEEHVELTAFSLIVVDECHHTHKDTVYNVIMSRYLELKLQRARPLPQVLGL 159

Query: 207 TASPVVRKGVSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQS 263
           TASP    G   A   +G I+   +L + LD+    +  +         +++ C+ YD  
Sbjct: 160 TASP----GTGGASKLDGAINHVLQLCANLDTWCI-MSPQNYFPQLQEHSQQPCKQYDLC 214

Query: 264 KFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
           +    D  G L          L KL   Q++ + +M +  +   KQ  +     L     
Sbjct: 215 QRRSQDPFGDL----------LKKLM-DQIHDHLEMPELSRDFGKQTYEQQVVKLSETAA 263

Query: 324 LGLICAYEAVKICLEKVLKAQEECEIYRQ----SSLQCKYFLEEVLHVIGSALPLADKIF 379
           L  +       + L +   A    +  R     ++LQ  Y  E   H   + +  A++  
Sbjct: 264 LAGLLEQRVYALHLRRYNDALLIHDTVRAVDALAALQSFYQRE---HATKTQILCAERWL 320

Query: 380 LDFGFDYSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVE 431
           L    D+     L +++T      KL E+L+  L   F  S     IIF     +A  + 
Sbjct: 321 LALFNDHKNV--LAHLATHGLENPKL-EMLEKILQKQFRSSDSPRGIIFTRTRQSAHSLL 377

Query: 432 RFVKKVPFLTHLTV-AYL---TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEG 487
            ++++ P L  + + A L   +G+++    +T K Q+EV+ +FR G +NLL AT V EEG
Sbjct: 378 LWLQQQPGLRTVDIRAQLLIGSGNSSQSTHMTQKDQQEVIRNFRSGTLNLLVATSVAEEG 437

Query: 488 MHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           + +P C+ V+R+ L     S +Q+RGRAR   S +  +  +G+ + + +L +
Sbjct: 438 LDIPQCNVVVRYGLLTNEISMVQARGRARAGQSVYSFVATKGSRELQRELIN 489


>gi|395826382|ref|XP_003786397.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 2
           [Otolemur garnettii]
          Length = 665

 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 126/528 (23%), Positives = 225/528 (42%), Gaps = 83/528 (15%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
           R YQ +V   A + +N I  L TGAGKT  A  + K     + +A     F++++     
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDRAKHGEEFRRML----- 58

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL-- 159
                  ++ ++ +  D      +G                  +D+L+ T ++L  A+  
Sbjct: 59  -----DGRWSMVTLSGDMGSRAGFGHLA-------------RSHDLLICTAELLQTAMTS 100

Query: 160 --RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVR 213
              +  + L     +V+DECHH   +  Y  I+  +      ++ + P+V G+TASP   
Sbjct: 101 PEEEEHVELTAFSLLVVDECHHTHKDTVYNVILSRYLEHKLQRAPSLPQVLGLTASP--- 157

Query: 214 KGVSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD------QSK 264
            G   A   +G I+   +L + LD+    +  ++         ++ C+ YD      Q  
Sbjct: 158 -GTGGASKLDGAINHILQLCANLDTWCI-MSPQSSCSQLHEYNQQPCKQYDICHRRSQDP 215

Query: 265 FCGSDLKGKLEVSWSKFDA-SLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
           F G  LK  ++    + D   LS+  G Q+   + +D         L +     L+    
Sbjct: 216 F-GDLLKKLMDQVHDRLDMPELSRDFGMQIYEQQMVDLSRDAAENGLQERRVYALHLRRY 274

Query: 324 LGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG 383
              +  ++ V+  ++ +   Q+     R +  Q  Y               A++  L   
Sbjct: 275 NDALLIHDTVR-AVDALATLQDFYNRERTTKTQVLY---------------AERWLLAL- 317

Query: 384 FDYSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVK 435
           FD +K   L +++T      KL E+L+  L   FGK      IIF     +A  +  +++
Sbjct: 318 FDDNKNA-LAHLATHGPENPKL-EVLERILQEQFGKPNSPRGIIFTRTRQSAHSLLLWLQ 375

Query: 436 KVPFLTHLTV--AYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
           + P L  + +    L GS  S     +T + Q+EV++ FR G +NLL +T V EEGM +P
Sbjct: 376 QQPGLQMVDIKAQMLIGSRNSGQRAHMTQRNQQEVIQKFRIGILNLLVSTSVAEEGMDIP 435

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           +C+ V+R+ L     S +Q+RGRAR   S +  +   G+ + R +L +
Sbjct: 436 HCNVVVRYGLLTNEISMVQARGRARASQSVYSFVAAEGSRELRRELIN 483


>gi|302321852|gb|ADL16770.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321856|gb|ADL16772.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321860|gb|ADL16774.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321862|gb|ADL16775.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321864|gb|ADL16776.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321868|gb|ADL16778.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321870|gb|ADL16779.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321872|gb|ADL16780.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321874|gb|ADL16781.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321876|gb|ADL16782.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321962|gb|ADL16825.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321964|gb|ADL16826.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321970|gb|ADL16829.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321992|gb|ADL16840.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322048|gb|ADL16868.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322052|gb|ADL16870.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322054|gb|ADL16871.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322056|gb|ADL16872.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322058|gb|ADL16873.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322096|gb|ADL16892.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322100|gb|ADL16894.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322130|gb|ADL16909.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322176|gb|ADL16932.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322180|gb|ADL16934.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322188|gb|ADL16938.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/155 (39%), Positives = 79/155 (50%), Gaps = 28/155 (18%)

Query: 1093 SCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL 1152
            S +LFL YP+KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG    
Sbjct: 1    SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG---- 56

Query: 1153 RPVPCECGVDTLEVPLDG--KFFTQDTKVVVGKPCDM----------------GHRWMGS 1194
              VP     DT     DG   FF ++ K V  +  D+                 +R + S
Sbjct: 57   --VPPVFDEDT----KDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSS 110

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1229
            KT+AD  EALIG YYV GG  AA ++MKW+GI  +
Sbjct: 111  KTLADVVEALIGVYYVEGGKXAANHLMKWIGIHVE 145


>gi|123454959|ref|XP_001315228.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121897898|gb|EAY03005.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 955

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 211/504 (41%), Gaps = 75/504 (14%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           NF  R YQ  +   + + NT+ V+ TG GKT I+ M+I +  +       K  I+FLA +
Sbjct: 10  NFSKRDYQFDISLASVKENTLVVIPTGLGKTFISAMVILNFYRWFP----KGKILFLATS 65

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDE--WDSQCWQKEINKNDVLVMTPQILLDALR 160
             LV QQ   IR     +  E     G  E     Q W    NK  V+  TPQ +   L 
Sbjct: 66  RPLVTQQMAGIRDILQIDKSEIIELTGSVEPRIRPQLW----NKARVIFATPQTVQKDLE 121

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMK------EFYHKSDNKPKVFGMTASPVVRK 214
           K       +  +VIDE HHATG+H Y K++       +F+       +V G++A+P   K
Sbjct: 122 KGTCPASQIVLVVIDEAHHATGDHSYCKVVSGIAEYTKFF-------RVIGLSATPGSDK 174

Query: 215 GVSSAMDCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKESCRFYDQSKFCGSD-LKG 272
            +   +     IS+++   + +        ++E V VP+A             G D L  
Sbjct: 175 DIIQDVIYGLFISKIQYREEDEYKQYVKTRDIETVVVPNA------------AGVDELIA 222

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC---- 328
           ++     ++   LSK      +      D  +T + Q              +GL+     
Sbjct: 223 RINTVIKRYLQVLSK------DNLVPHTDPTRTTKGQ--------------IGLLMKNRN 262

Query: 329 AYEAVKICLE--KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
           A E V + +   K+LK +E  + Y       K F++ V   I         +  D     
Sbjct: 263 ANEGVGVMISTMKLLKFREYLQNY-----SIKTFVDAVTEFITDKSTRDVDLVSDLQPIL 317

Query: 387 SKAVDLGYISTKLHELLQLFLSFGKST-QVLCIIFVERIIAAKVVERFVKKVPFLTHLTV 445
           S A     I  K+ +L ++ + F ++T +   IIF        +V+  V  +   + + V
Sbjct: 318 SAAQKQRQIDPKMEKLCEIVVDFLEATKESRIIIFCN---FRNIVQDIVTALSSKSIVKV 374

Query: 446 AYLTGSTTS--VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK 503
           +   G + S     L    Q  +++SFR G  N+L AT + EEG+ +     +I +D+ K
Sbjct: 375 SEFIGQSNSGGTKGLNQSRQINLIQSFRRGIYNVLVATAIGEEGLDIGEVDLIICYDVQK 434

Query: 504 TVSSYIQSRGR-ARQHNSQFILML 526
           +++  IQ  GR  R+ + + I +L
Sbjct: 435 SITRTIQRMGRTGRKRDGKVIFLL 458


>gi|218186727|gb|EEC69154.1| hypothetical protein OsI_38094 [Oryza sativa Indica Group]
          Length = 446

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 69/105 (65%)

Query: 214 KGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273
           +GVSS +DCEGQ  ELE+ LD++++ + D+ E+E+ VPSAKE  RFYD    C  DL  +
Sbjct: 340 QGVSSHLDCEGQFCELENLLDAKIYRVSDREEIELCVPSAKEMYRFYDPKTICFEDLSEE 399

Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL 318
           L V   K+DA +++LQ  Q   Y+D DD  K  R++LS++   +L
Sbjct: 400 LGVLCPKYDALITELQNKQSYMYEDADDITKESRRRLSNFSKNLL 444



 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 47/62 (75%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQL V+EVA RRNTIA+L+TGAGK MIAVM IK+  +  ++    K+IIFLAPTV LV
Sbjct: 221 RRYQLDVYEVAMRRNTIAMLDTGAGKIMIAVMFIKEFGKINRTKNAGKVIIFLAPTVQLV 280

Query: 107 HQ 108
            Q
Sbjct: 281 AQ 282


>gi|114667313|ref|XP_001167051.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 5 [Pan
           troglodytes]
 gi|410209926|gb|JAA02182.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Pan troglodytes]
 gi|410259426|gb|JAA17679.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Pan troglodytes]
 gi|410297276|gb|JAA27238.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Pan troglodytes]
 gi|410330751|gb|JAA34322.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Pan troglodytes]
          Length = 678

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 131/528 (24%), Positives = 232/528 (43%), Gaps = 70/528 (13%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +  +G K  ++ L   VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +  R   D  + +    G  G        +      +D+L+ T ++L  AL    
Sbjct: 60  VTQHGEEFRRMLDGRWTMTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTSPE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKG 215
            +  + L     IV+DECHH   +  Y  IM ++      ++   P+V G+TASP    G
Sbjct: 116 EEEHVELTAFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I+   +L + LD+    +  +         +++ C+ Y+       D  G
Sbjct: 172 TGGASKLDGAINHVLQLCANLDTWCI-MSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            L          L KL   Q++ + +M +  +    Q+  Y  +++  L E   +   + 
Sbjct: 231 DL----------LKKLM-DQIHDHLEMPELSRNFGTQM--YEQQVVK-LSEAAALAGLQE 276

Query: 333 VKICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            ++    + +  +   I+         ++LQ  Y  E   HV  + +  A++  L   FD
Sbjct: 277 QRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE---HVTKTQILCAERRLLAL-FD 332

Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAK------VVE 431
             K  +L +++T      KL E+L+  L   F  S     IIF     +A         +
Sbjct: 333 DRKN-ELAHLATHGPENPKL-EMLEKILQRQFSSSNSSRGIIFTRTRQSAHSLLLWLQQQ 390

Query: 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
           + ++ V     L +    G+++    +T + Q+EV++ F+ G +NLL AT V EEG+ +P
Sbjct: 391 QGLQTVDIRAQLLIG--AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           +C+ V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L +
Sbjct: 449 HCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELIN 496


>gi|405968673|gb|EKC33722.1| Dicer-like protein 2 [Crassostrea gigas]
          Length = 520

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 108/458 (23%), Positives = 198/458 (43%), Gaps = 97/458 (21%)

Query: 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--H 195
           WQ     +D++V+T       + K  L  + +C +V DE HH T NHP+ K+++  +   
Sbjct: 75  WQ-----HDLIVVTAAYCEQLIMKNVLRWEDLCIVVFDEAHHCTKNHPFNKLLENNHLTR 129

Query: 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQV-FTIEDKTEMEVFVPSAK 254
               +PK+ G+TASP  +K     +     +  ++S  ++++  T E K E++ +  SA 
Sbjct: 130 PLGERPKILGLTASPAGKKTFPFTVTMLQTL--MKSMGETEIGVTKEQKAELDRYQSSA- 186

Query: 255 ESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYH 314
           E   +Y         L+ +L++   +    L     ++ N    +D   +   KQ  D H
Sbjct: 187 ELIVYYKPMNDNEQKLQNELQMYLLRCFLRLK----AETNILDKIDQGMEP--KQAEDLH 240

Query: 315 AKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHV------- 367
             IL CL E+ L                   + E Y QS+ +       VLH        
Sbjct: 241 GDILNCL-EVSL------------------NDAESYDQSAAKKIENRHLVLHTRFICIAL 281

Query: 368 -------IGSALPLADKIF---LDFGFDYSKAVDL---------------------GYI- 395
                  + +A+   D++    ++F FD++K  +L                     G I 
Sbjct: 282 NTLFEAGVKTAVEELDELMALDVNFNFDFAKENNLDPDNLQSVIRLVRNDERISLPGPIN 341

Query: 396 -----STKLHELLQLFLS-----FGKSTQVLCIIFVERIIAAKVVERF-----VKKVPF- 439
                S+K+  L+   L+     + +   +  ++  ERI A+K+ +       +K++   
Sbjct: 342 PETQHSSKIVALIHTILNKNNIDWTQENPMTLVLVKERITASKISKILQEQDDIKRMGLR 401

Query: 440 LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
           +THL             A+    QK++L   +  K +++ AT V EEG+ +P C  VI  
Sbjct: 402 VTHLVGHGGGSGEGGGMAVNQ--QKKILRDIKHHKYHIVVATSVAEEGIDIPECELVITM 459

Query: 500 DLPKTVSSYIQSRGRARQHNSQFILM----LERGNLKQ 533
           +LP +V++ +Q RGRAR+ +S+F+++    +E   LK+
Sbjct: 460 NLPSSVTALVQMRGRARKEHSKFVVLCSEKMEEDKLKE 497


>gi|397485570|ref|XP_003813916.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 1 [Pan
           paniscus]
          Length = 678

 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 131/528 (24%), Positives = 232/528 (43%), Gaps = 70/528 (13%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +  +G K  ++ L   VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +  R   D  + +    G  G        +      +D+L+ T ++L  AL    
Sbjct: 60  VTQHGEEFRRMLDGRWTMTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTSPE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKG 215
            +  + L     IV+DECHH   +  Y  IM ++      ++   P+V G+TASP    G
Sbjct: 116 EEEHVELTAFSLIVVDECHHTHKDTIYNVIMSQYLELKLQRAQPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I+   +L + LD+    +  +         +++ C+ Y+       D  G
Sbjct: 172 TGGASKLDGAINHVLQLCANLDTWCI-MSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            L          L KL   Q++ + +M +  +    Q+  Y  +++  L E   +   + 
Sbjct: 231 DL----------LKKLM-DQIHDHLEMPELSRNFGTQM--YEQQVVK-LSEAAALAGLQE 276

Query: 333 VKICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            ++    + +  +   I+         ++LQ  Y  E   HV  + +  A++  L   FD
Sbjct: 277 QRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE---HVTKTQILCAERRLLAL-FD 332

Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAK------VVE 431
             K  +L +++T      KL E+L+  L   F  S     IIF     +A         +
Sbjct: 333 DRKN-ELAHLATHGPENPKL-EMLEKILQRQFSSSNSSRGIIFTRTRQSAHSLLLWLQQQ 390

Query: 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
           + ++ V     L +    G+++    +T + Q+EV++ F+ G +NLL AT V EEG+ +P
Sbjct: 391 QGLQTVDIRAQLLIG--AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           +C+ V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L +
Sbjct: 449 HCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELIN 496


>gi|296202918|ref|XP_002748670.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 2
           [Callithrix jacchus]
          Length = 661

 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 128/521 (24%), Positives = 220/521 (42%), Gaps = 73/521 (14%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + +   + +    F +++         
Sbjct: 4   RPYQQEVITPALEGKNIIIWLPTGAGKTRAAAYVARQHLETVDGAKFSRML--------- 54

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL----RK 161
              ++ +  +  D      +G        ++C       +D+L+ T ++L  AL     +
Sbjct: 55  -DGRWTMTTLSGDMGPRAAFGHL------ARC-------HDLLICTAKLLQMALTSPEEE 100

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKGVS 217
             + L     IV+DECHH   +  Y  IM ++      ++   P+V G+TASP    G  
Sbjct: 101 EHVELTAFSLIVVDECHHTHKDTVYNIIMSQYLELKLQRARPLPQVLGLTASP----GTG 156

Query: 218 SAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
            A   +G I+   +L + LD+   T   +          ++ C+ YD  +    D  G L
Sbjct: 157 GASKLDGAINHVLQLCANLDTWCIT-SPQNCFPQLQEHNQQPCKQYDLCQRRSQDPFGDL 215

Query: 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334
                     L KL   Q++ + +M +  +   KQ  +     L     L  +       
Sbjct: 216 ----------LKKLM-DQIHDHLEMPELSRDFGKQTYEQQVVKLSETAALAGLLEQRVYA 264

Query: 335 ICLEKVLKAQEECEIYRQ----SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV 390
           + L +   A    +  R     ++LQ  Y  E   H   + +  A++  L    D+    
Sbjct: 265 LHLRRYNDALLIHDTVRAVDALAALQNFYQRE---HATKTQILCAERWLLALFNDHKDM- 320

Query: 391 DLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
            L +++T      KL E+L+  L   F  S     IIF     +A  +  ++++ P L  
Sbjct: 321 -LAHLATHGLENPKL-EMLEKILQKQFRSSDSPRGIIFTRTRQSAHSLLLWLQQQPGLQT 378

Query: 443 LTV--AYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
           + +    L GS  S     +T K Q+EV+  FR G +NLL AT V EEG+ +P C+ V+R
Sbjct: 379 VDIRPQLLIGSGNSSQRTHMTQKDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQCNVVVR 438

Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           + L     S +Q+RGRAR   S +  +  +G+ + + +L +
Sbjct: 439 YGLLTNEISMVQARGRARAGESVYSFVATKGSRELQRELIN 479


>gi|291235953|ref|XP_002737903.1| PREDICTED: Dicer Related Helicase family member (drh-1)-like
           [Saccoglossus kowalevskii]
          Length = 996

 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 24/229 (10%)

Query: 40  NSINFIPRIYQLKVFEVAKRR-NTIAVLETGAGKTMIAVMLIK-DIAQAIKSNGFKKL-- 95
           N    IPR YQ ++   A R  N+I    TG GKT +A+M+ K  +  A+ S   K    
Sbjct: 318 NYEELIPRSYQEELGGPACRGLNSIICAPTGTGKTHVAMMIAKRHMENALASQARKGFTT 377

Query: 96  ----IIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVM 150
               +IFL   + L++Q Y  ++++   FE+ +  GA       +  ++K +  ND+++ 
Sbjct: 378 SGAKVIFLVHRIPLLNQTYKRLKMYLPLFEIGKLSGASS----SNVTFEKLVEINDIIIT 433

Query: 151 TPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HKSDNK---PKVFGM 206
           T  IL ++L+    S+     I+IDECHHA  NHPY  IM ++   K DNK   P++ G+
Sbjct: 434 TTDILKNSLKHGKSSMSTFSLIIIDECHHAMKNHPYNIIMAQYLKEKFDNKSSLPQIVGL 493

Query: 207 TASPVVRKGVSSAMD-CEGQISELESTLDSQVFTI----EDKTEMEVFV 250
           TASP    G +S +      I +L + LD+  F       +K E+E FV
Sbjct: 494 TASPGT--GSNSELGAARDHILKLCANLDAGEFVTVKNPRNKAELEKFV 540



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVD-ALTPKVQKEVLESFRGGKVN 476
           IIFV+  + A  V   +K+   L  L  + LTG  T+ D ++T   Q   L  F  G   
Sbjct: 704 IIFVKTRVLASAVLDCIKEDQELQMLRPSRLTGVKTAGDESMTQAEQDSNLRKFADGDCK 763

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR--QHNSQFI 523
           LL AT V EEG+ +  C  VIR++      S  Q+RGRAR  Q    FI
Sbjct: 764 LLIATSVAEEGLDIKECHMVIRYNYATNEISMRQARGRARATQSKEHFI 812


>gi|215693904|dbj|BAG89103.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697049|dbj|BAG91043.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 142

 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 69/105 (65%)

Query: 214 KGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273
           +GVSS +DCEGQ  ELE+ LD++++ + D+ E+E+ VPSAKE  RFYD    C  DL  +
Sbjct: 36  QGVSSHLDCEGQFCELENLLDAKIYRVSDREEIELCVPSAKEMYRFYDPKTICFEDLSEE 95

Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL 318
           L V   K+DA +++LQ  Q   Y+D DD  K  R++LS++   +L
Sbjct: 96  LGVLCPKYDALITELQNKQSYMYEDADDITKESRRRLSNFSKNLL 140


>gi|348562460|ref|XP_003467028.1| PREDICTED: probable ATP-dependent RNA helicase DHX58-like [Cavia
           porcellus]
          Length = 678

 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 132/521 (25%), Positives = 223/521 (42%), Gaps = 60/521 (11%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +  +G K  ++ L   VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59

Query: 106 VHQQYD--VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +   + +   + +    G  G        +     K+D+L+ T ++L  AL    
Sbjct: 60  VTQHAEEFSLVLGGRWAMTTLSGDMGA----RAGFGHTARKHDLLICTAELLQMALNSTE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HKSDNK---PKVFGMTASPVVRKG 215
            +  + L     IV+DECHH   +  Y  I+ ++  HK  +    P+V G+TASP    G
Sbjct: 116 EEEHMELTAFSLIVVDECHHTHKDTVYNVILSQYLEHKLQSPRRLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
                  EG IS   +L + LD+    +  K      +    E C+ YD  +    D  G
Sbjct: 172 TGGNSKLEGAISHILQLCANLDAWRI-MSPKIHRPALLEHRPEPCKQYDLCQQRSQDPFG 230

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            L          + KL  +Q++ + +M D  +    Q+  Y  +++  L +       + 
Sbjct: 231 DL----------IKKLM-AQIHNHPEMPDLTQDFGTQM--YEQQVVQ-LSKTAAEAGLQQ 276

Query: 333 VKICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            ++    + +  +   I+         +SLQ  Y  E       S +  A++  LD   D
Sbjct: 277 RRVLALHLRRYNDALLIHDTVRAVDALASLQDFYNRER---NTKSQILRAERWLLDLFDD 333

Query: 386 Y----SKAVDLGYISTKLHELLQLF-LSFGKSTQVLCIIF--VERIIAAKVVERFVKKVP 438
           +    ++    G  + KL  L Q+  + F        IIF    +   + ++    +   
Sbjct: 334 HKDELTQLATHGPENPKLETLEQILRVKFKDPANPRGIIFTRTRQSTQSLLLWLQQQPSL 393

Query: 439 FLTHLTVAYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496
            L  +    L G+  S  +  +T + Q+EV++ FR G +NLL AT V EEG+ +  CS V
Sbjct: 394 QLVDIRAQMLIGAGNSSQSAHMTQRNQQEVIQKFRMGSLNLLVATSVAEEGLDIAKCSVV 453

Query: 497 IRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           +R+ L     S +Q+RGRAR   S +  +   G+ + R +L
Sbjct: 454 VRYGLLTNEISMVQARGRARASQSVYSFVATEGSRELRREL 494


>gi|10432595|dbj|BAB13818.1| unnamed protein product [Homo sapiens]
          Length = 678

 Score = 94.4 bits (233), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 131/528 (24%), Positives = 232/528 (43%), Gaps = 70/528 (13%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +  +G K  ++ L   VHL
Sbjct: 4   RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +  R   D  + V    G  G        +      +D+L+ T ++L  AL    
Sbjct: 60  VTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTSPE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKG 215
            +  + L +   IV+DECHH   +  Y  IM ++      ++   P+V G+TASP    G
Sbjct: 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I+   +L + LD+    +  +         +++ C+ Y+       D  G
Sbjct: 172 TGGASKLDGAINHVLQLCANLDTWCI-MSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            L          L KL   Q++ + +M +  +    Q+  Y  +++  L E   +   + 
Sbjct: 231 DL----------LKKLM-DQIHDHLEMPELSRKFGTQM--YEQQVVK-LSEAAALAGLQE 276

Query: 333 VKICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            ++    + +  +   I+         ++LQ  Y  E   HV  + +  A++  L   FD
Sbjct: 277 QRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE---HVTKTQILCAERRLLAL-FD 332

Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAK------VVE 431
             K  +L +++T      KL E+L+  L   F  S     IIF     +A         +
Sbjct: 333 DRKN-ELAHLATHGPENPKL-EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390

Query: 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
           + ++ V     L +    G+++    +T + Q+EV++ F+ G +NLL AT V EEG+ +P
Sbjct: 391 QGLQTVDIRAQLLIG--AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIP 448

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           +C+ V+R+ L     S +Q+RGRA    S +  +   G+ + + +L +
Sbjct: 449 HCNVVVRYGLLTNEISMVQARGRAWADQSVYAFVATEGSRELKRELIN 496


>gi|259489686|tpe|CBF90161.1| TPA: RNA helicase/RNAse III, putative (AFU_orthologue;
           AFUA_5G11790) [Aspergillus nidulans FGSC A4]
          Length = 411

 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 8/178 (4%)

Query: 88  KSNGFKKLI-IFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKND 146
           ++NG   +I IFL  +V L ++Q  V+R + D  V   +GA G D W  Q W + + K  
Sbjct: 34  RTNGELHMISIFLVDSVTLSYKQAGVLRNNLDMNVGRIFGALGFDLWSRQTWTEFLEKYM 93

Query: 147 VLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVF 204
           V+V T ++L   L  A + ++ +  +V DE HH   +H   +I+++ Y  +    +P+V 
Sbjct: 94  VVVCTAEVLYQCLLHAHIRMEQINLLVFDEAHHTKKDHVCARIIRDSYFPTAQSKRPRVL 153

Query: 205 GMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ 262
           GMTASPV  KG     D       LE  LDS++ T    + +   V   KE    YD+
Sbjct: 154 GMTASPVDTKG-----DVAQAAMNLELYLDSKIATASQLSLVHQVVRRPKEEAWIYDR 206


>gi|330797669|ref|XP_003286881.1| hypothetical protein DICPUDRAFT_150900 [Dictyostelium purpureum]
 gi|325083116|gb|EGC36577.1| hypothetical protein DICPUDRAFT_150900 [Dictyostelium purpureum]
          Length = 790

 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 42  INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
           +N  PR YQ+++F+ + +++ I  L TG GKT+I+ M+IK + +    N  K+ IIF+  
Sbjct: 207 LNKQPRPYQIEIFKESMKQDIICCLPTGLGKTLISCMVIKRMKEL---NPMKR-IIFMVD 262

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
            + LV QQ  VI   T  +V   +G    +   SQ +       DVLV+   +L++ +  
Sbjct: 263 RIPLVQQQSKVIAEETGLQVLAAHGDSFKNTQLSQSF-------DVLVIIGALLINLIIN 315

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAM 220
             + L+  C IV DE HH    HP+   +K F   +  N+PK+ G+TASP  +K   S +
Sbjct: 316 NEIDLNHFCLIVTDEAHHIVKGHPFAVALKHFPEIERTNRPKLLGLTASPAGKKDFISTL 375



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 6/160 (3%)

Query: 397 TKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVE--RFVKKVPFLTHLTVAYLTG-ST 452
           T L+E  Q   +   S+    IIFV+ R  AA++VE    +K     + L    + G  +
Sbjct: 529 TILNEFYQKNRNNDGSSNFRAIIFVKTRKSAARLVEILNVIKNKGDFSFLKPTIVVGHGS 588

Query: 453 TSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
            S D ++   QK+ ++ FR  K NL+ AT V+EEG  VP C+ VIR D P TV++ IQSR
Sbjct: 589 KSNDGMSISKQKDAIDRFRQDKCNLIVATSVVEEGFDVPECNLVIRLDPPTTVTANIQSR 648

Query: 513 GRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTAL 552
           GR R  +S FI +++  + ++   +++  R +    DTA+
Sbjct: 649 GRLRSKDSYFIGIVKECDREE--GVYESFRKQEEFLDTAI 686


>gi|222639908|gb|EEE68040.1| hypothetical protein OsJ_26036 [Oryza sativa Japonica Group]
          Length = 169

 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 69/105 (65%)

Query: 214 KGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273
           +GVSS +DCEGQ  ELE+ LD++++ + D+ E+E+ VPSAKE  RFYD    C  DL  +
Sbjct: 63  QGVSSHLDCEGQFCELENLLDAKIYRVSDREEIELCVPSAKEMYRFYDPKTICFEDLSEE 122

Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL 318
           L V   K+DA +++LQ  Q   Y+D DD  K  R++LS++   +L
Sbjct: 123 LGVLCPKYDALITELQNKQSYMYEDADDITKESRRRLSNFSKNLL 167


>gi|363992270|gb|AEW46680.1| DEXH (Asp-Glu-X-His) box polypeptide 58 [Pteropus alecto]
          Length = 678

 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 131/532 (24%), Positives = 229/532 (43%), Gaps = 57/532 (10%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TG+GKT  A  + K   + +     +  ++ L   VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVAKRHLETVD----RAKVVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q Y+      D  + +    G  G        +     KND+L+ T ++L  AL    
Sbjct: 60  VTQHYEEFSHMLDGRWAITTLRGDMG----PRPGFGHLARKNDLLICTAELLQMALVSTE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKG 215
            +  + L+    +V+DECHH   +  Y  I+  +      +    P+V G+TASP    G
Sbjct: 116 EEEHVELNEFSLLVVDECHHTHKDTVYNIILSRYLQHKLQRMWPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD------QSKFC 266
              A + +G I    +L + LD+    +  +T         ++ C+ YD      Q  F 
Sbjct: 172 TGRATNLDGAIDHILQLCANLDTWRI-MSPQTYRPQLQEHNRQPCKQYDLCHRRSQDPF- 229

Query: 267 GSDLKGKLEVSWSKFDAS-LSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELG 325
           G  LK  +       + + LS+  G+Q+   + ++         L       L+      
Sbjct: 230 GDMLKKLMNQIHDHLEMTELSRDFGTQMYEQQVVELSQTAAEAGLQQQRVYALHLRRYND 289

Query: 326 LICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            +  ++ V+  ++ +   Q+  +  R +  Q       VL      L L D    D   +
Sbjct: 290 ALFIHDTVR-AVDALAALQDFYDRERDTKTQ-------VLRAERWLLALFD----DHKNE 337

Query: 386 YSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT 444
            ++    G  + KL  L Q+    FG       I+F     +A  +  ++++ P L  + 
Sbjct: 338 LARLATQGPENPKLEMLEQILKKQFGNPGNPRGIVFTCTRQSAHSLLLWLRQQPGLQTVD 397

Query: 445 V-AYL---TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
           + A L    G+++    +T + Q+EV+  FR G +NLL AT V EEG+ +P C+ V+ + 
Sbjct: 398 IRAQLLIGAGNSSRGTTMTQRDQQEVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVVHYG 457

Query: 501 LPKTVSSYIQSRGRARQHNSQFILMLERGN----LKQRNKLFDIIRSERSVT 548
           L     S +Q+RGRAR + S +  +   G+     +Q N+  +I+  +R+VT
Sbjct: 458 LLTNEISMVQARGRARANESVYSFVATHGSRELQREQTNEALEIL-MKRAVT 508


>gi|332158155|ref|YP_004423434.1| Hef nuclease [Pyrococcus sp. NA2]
 gi|331033618|gb|AEC51430.1| Hef nuclease [Pyrococcus sp. NA2]
          Length = 749

 Score = 94.0 bits (232), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 129/484 (26%), Positives = 212/484 (43%), Gaps = 62/484 (12%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR+YQ  ++   K RN + VL TG GKT+IA M+I D     + N +   ++ LAPT  L
Sbjct: 10  PRLYQELIYAKCKDRNCLIVLPTGLGKTIIA-MMIADY----RLNKYGGKVLMLAPTKPL 64

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V Q  +  R   +   E+     G  E       +   +  V++ TPQ + + L    +S
Sbjct: 65  VLQHAETFRKFFNLPPEKIVALTG--EISPNERVRAWARAKVIIATPQTVENDLLVGRIS 122

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-VVRKGVSSAMDCEG 224
           L+ V  I+ DE H A GN+ Y  I +E+  ++ N P V G+TASP    + +   +D  G
Sbjct: 123 LEDVSLIIFDEAHRAVGNYAYVYIAREYLKQAKN-PLVIGLTASPGSTPEKIKEVLDNLG 181

Query: 225 QISELESTLDSQVFTIEDKTEMEVFVPSAK------ESCRFYDQ-SKFCGSDLKGKLE-V 276
            I  +E       +  E+  +++ +V   K      E    Y +  K     LK  L+ +
Sbjct: 182 -IEHIE-------YRSENSPDVKPYVQGIKFEWVKVELPELYKEVRKLLREMLKDTLKPL 233

Query: 277 SWSKFDASLSK-------LQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLI-- 327
           + + F  S S        L+  Q+   ++M   +  LRK L  +HA  L     + L+  
Sbjct: 234 AEAGFIDSSSPDIPKREVLKAGQI-INEEMAKGNHDLRKYLL-FHAMALKLHHAIELLET 291

Query: 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
               A+++ L+K+ +  +         L     +++ L     AL L  K   + G D+ 
Sbjct: 292 QGLSALRVYLKKLYEEAKTGSTRASKELFLDRRMKKAL-----ALLLQAK---ELGLDHP 343

Query: 388 KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVA 446
           K   L  +   + E L+      K      I+F   R  A KVVE   K+      +   
Sbjct: 344 K---LNVLKKLIKEQLE------KKPNSKIIVFTNYRETAKKVVEELTKE-----GIEAR 389

Query: 447 YLTGSTTSVD--ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD-LPK 503
              G  +  +   ++ + QK +L+ F  G+ N+L AT V EEG+ VP    VI ++ +P 
Sbjct: 390 RFVGQASRENDRGMSQREQKIILDMFSRGEFNVLVATSVGEEGLDVPEVDLVIFYEPVPS 449

Query: 504 TVSS 507
            + S
Sbjct: 450 AIRS 453


>gi|302322202|gb|ADL16945.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322208|gb|ADL16948.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score = 94.0 bits (232), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 60/155 (38%), Positives = 79/155 (50%), Gaps = 28/155 (18%)

Query: 1093 SCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL 1152
            S +LFL YP+KHEGQL+  R   V N  L++    + LQ YI+   F P RW APG    
Sbjct: 1    SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPG---- 56

Query: 1153 RPVPCECGVDTLEVPLDG--KFFTQDTKVVVGKPCDM----------------GHRWMGS 1194
              VP     DT     DG   FF ++ K V  +  D+                 +R + S
Sbjct: 57   --VPPVFDEDT----KDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSS 110

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1229
            KT+AD  EALI  YYV GG +AA ++MKW+GI  +
Sbjct: 111  KTLADVVEALIXVYYVEGGKVAANHLMKWIGIHVE 145


>gi|393238282|gb|EJD45820.1| hypothetical protein AURDEDRAFT_124545 [Auricularia delicata
           TFB-10046 SS5]
          Length = 1121

 Score = 94.0 bits (232), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 100/201 (49%), Gaps = 24/201 (11%)

Query: 59  RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP----------------T 102
           +RN   VLE+G+G+T IAV+ ++   +   + G  K      P                 
Sbjct: 285 KRNITIVLESGSGETHIAVLRLRLEVERQAALGTNKASWTSCPPCARPLTPLRPLWTQWQ 344

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMTPQILLDALRK 161
           V L  QQ+ ++       V    GA   D+W S   W++ ++ N V+V TPQ+LLDALR 
Sbjct: 345 VALCQQQHRLLERELPCSVGFISGALQPDKWTSAGVWKQVVSINQVVVSTPQVLLDALRH 404

Query: 162 AFLSLDI-VCFIVIDECHHATGNHPYTKIMKEFYH--KSDNKPKVFGMTASPVVRKGVSS 218
           A++ L + V  ++ DE HHA   HPY +IM+EFY   ++ +K  + G+TASP+    V  
Sbjct: 405 AYMDLGLDVGLLIFDEAHHALRGHPYNRIMREFYDPLEAADKQFIMGLTASPL---NVEY 461

Query: 219 AMDCEG-QISELESTLDSQVF 238
            + C      E E  L + VF
Sbjct: 462 DLLCRALATRENEEELRAHVF 482



 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 102/245 (41%), Gaps = 53/245 (21%)

Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
           K Q+E L+    G++N L A  V+EEG+ V  C+  IRF+    ++ ++QSRGRAR   S
Sbjct: 688 KAQEETLKDCADGRLNWLIAPSVLEEGLDVARCNCAIRFNPGNNITGWVQSRGRARARRS 747

Query: 521 QFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYV---------KTKS 571
            F++M       Q          E  +  TAL R+  A + +A             +   
Sbjct: 748 SFVVMFSTMQDGQ----------EHMLKCTALEREMNAKYKEAMRKRAVGAPPREERRHY 797

Query: 572 YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKY-------------------K 612
           + VE TGA +T ++    I  +C+ LP   Y    PI+                     K
Sbjct: 798 FKVEQTGALLTLNNPTAHISHFCDKLPHSAYARMVPIYDIFPPDGFMEPLAPGQALPAPK 857

Query: 613 SAEEAYECELTLPSNAPFQTIVGPTSR---------NKNLSKQLVCLEACEKLHQVGALN 663
              + + C L L        +V P  R         ++  +K+ V  + C+KL   G +N
Sbjct: 858 EESKLFGCTLML------LNVVSPALRKHVTPMVHPSEKAAKRQVAFDVCQKLFNAGLVN 911

Query: 664 DHLLP 668
            +LLP
Sbjct: 912 PNLLP 916


>gi|258565145|ref|XP_002583317.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237907018|gb|EEP81419.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1194

 Score = 94.0 bits (232), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 184/415 (44%), Gaps = 43/415 (10%)

Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL-TVAYL 448
           V+   +STK+++L+  FL        + IIF        ++   +   P   H+ T+A+L
Sbjct: 150 VEPNEVSTKVNKLID-FLENEHVNGSIGIIFARERSTVVMLTHLLSLHPRTKHIGTIAFL 208

Query: 449 TGSTTS------VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
             S+ +       +    K Q   L+  R GK NL+ AT V+EEG+ VP C  VI FD P
Sbjct: 209 GSSSFASRKSDITELHNTKAQMTALDDLRNGKKNLIIATSVLEEGIDVPACDLVICFDFP 268

Query: 503 KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLK 562
           + + S+IQ RGRAR+  S+F L ++   ++    +  +   E ++    L  +     L+
Sbjct: 269 QNLRSFIQRRGRARKKGSKFALFVD---IQDHAAISTLKAVEETMKGLYLENERTLEELQ 325

Query: 563 ACTYVKTKSY---IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE-EAY 618
                +   Y    ++STGA +T  ++ N +  +C +L  + Y   +P F  +  E    
Sbjct: 326 LLEEAEEDGYDGFRIKSTGALLTLSNARNHLSHFCGILACE-YADTEPTFMVQGDELSGL 384

Query: 619 ECELTLPS--NAPFQTIVG-PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSE 675
             ++ LP+      +   G  T R + ++K+    +A   L++ G +ND+L+P       
Sbjct: 385 SAKVILPNFFEPRLREFRGISTWRTERMAKRDAAFQAYVALYKAGLVNDYLMP------- 437

Query: 676 NNLISKKNESLPGAGTTKRKELHGTT----PIRALSGRWGEKCGVILHAYKFNFACSIVT 731
              I+ +  S    G+ +R      +    P   ++ +W +   +    Y+     S  +
Sbjct: 438 ---INHRENSADDVGSMERPSFANVSDIFDPWATVANQWQKATEL----YQSVIEISTDS 490

Query: 732 EIYSGFVLLIESELDNDVGNFEL-----ELYLVSKTVKATVSSSGQVHLDADQMS 781
           ++ S  ++++   L  D+ +F L       +LVS T      ++  V L AD  S
Sbjct: 491 QVISPMLMVLPVGLPCDI-SFRLFWDENTTFLVSATRTTQKFAAELVSLAADTTS 544



 Score = 73.6 bits (179), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 119/281 (42%), Gaps = 43/281 (15%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +PI   +    +P ++  +E  ++A +L   I    +   +  SL+L A+++    E+ +
Sbjct: 690  LPIQYTRFTLFIPCLIHNIEKTLIADELARTILRPVKFSDL--SLVLTAISSSVAREASN 747

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +RLE LGDS+LK   S  L     +  EG L++R+S  V NS L K  T+  L  +I  
Sbjct: 748  YQRLEFLGDSLLKLYTSIELAAKNLQWPEGLLTSRKSHVVSNSHLAKAATETGLDRFILT 807

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
              F   +W        RP                   + +T  V     +   R M +K 
Sbjct: 808  KPFSGAKW--------RP-------------------SYNTDHVHAGDEEGSPRVMSTKV 840

Query: 1197 IADCAEALIGAYYVGGG-------LIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVP 1249
            +AD  EALIGA  + G        L   L  + W  +D  + +   +   +       +P
Sbjct: 841  LADVVEALIGAANIDGADEKTLDCLKVFLPEINWSPLDESVGLLYRNATDSGDEYSMVLP 900

Query: 1250 RINEIKDIESKIGYEFTVKFLLQEAITH-ASVQEFYCYQNL 1289
             I E+      +GY FT K L+  A+TH +S    + YQ L
Sbjct: 901  EIEEL------LGYTFTKKSLVLAALTHPSSTTSRHSYQRL 935


>gi|449299067|gb|EMC95081.1| hypothetical protein BAUCODRAFT_72607, partial [Baudoinia
           compniacensis UAMH 10762]
          Length = 774

 Score = 94.0 bits (232), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 121/519 (23%), Positives = 218/519 (42%), Gaps = 68/519 (13%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  +   +   NT+  L TG GKT IA  ++ +  +   ++     ++F+APT  L+
Sbjct: 109 RDYQYNIVNRSLFHNTLVALPTGLGKTFIAATVMLNYYRWTPTSQ----LVFMAPTKPLI 164

Query: 107 HQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            QQ D       + R  T     E   A   ++W          +  V  MTPQ +++ L
Sbjct: 165 AQQLDACYRIVGIPRCDTVLMTGETTPAVRAEQW---------LEKRVFFMTPQTVINDL 215

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR-KGVSS 218
           +        +  +V+DE H ATG + YT+++  F  + ++  +V  +TA+P  + + V +
Sbjct: 216 KSGISDPKKIVLVVVDEAHKATGGYAYTEVIA-FLRRFNSSFRVLALTATPGSKVEAVQA 274

Query: 219 AMDCEG-QISEL--ESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLK--GK 273
            +D  G   +EL  E +LD + +T E  T+ E+F  S ++       +K     L+    
Sbjct: 275 VIDHLGIARTELRTEQSLDIRPYTHEKHTDFELFDYSDEQELIMEHMTKALNPVLQKLNS 334

Query: 274 LEVSWSK-------FDASLSKLQGSQLNC-------YKDMDDKHKTLRKQLS------DY 313
               WS+       F  + ++ Q  Q +         K M +   TL  QL+       Y
Sbjct: 335 QNAFWSRDPMQLTAFGLTKARTQWMQSDAGRRAPMPLKGMINIIFTLLSQLAHGIGLLKY 394

Query: 314 HAKILYCLDELGLICAYEAVKICLEKVLKAQE--ECEIYRQSSLQCKYFLEEVLHVIGSA 371
           H  + +     G++   +AV     K   A+E  +   + Q   + + +      V    
Sbjct: 395 HGIVPFY---TGMLEFQKAVDSGQSKGKNAREIVQSSDFIQMMSRIRGWTHNPDFVGHPK 451

Query: 372 LPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE 431
           L    ++ L    D  +   LG  +      + +F SF  S + +C          +V++
Sbjct: 452 LQYLREVVLGHFLDAGEGA-LGTDAPPSATRVMVFASFRDSCEEIC----------RVLK 500

Query: 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
           R     P +         GS  S + +T + Q  V++ F+ GK N L AT + EEG+ + 
Sbjct: 501 R---NDPLIRPHVFVGQAGSANS-EGMTQQKQNAVVQDFKAGKFNTLVATSIGEEGLDIG 556

Query: 492 NCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
           +   ++ +D   +    +Q  GR  R+   + +L+L RG
Sbjct: 557 DVDLIVCYDASSSPIRMLQRIGRTGRKRIGKVVLLLVRG 595


>gi|310793920|gb|EFQ29381.1| type III restriction enzyme [Glomerella graminicola M1.001]
          Length = 1113

 Score = 93.6 bits (231), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 134/571 (23%), Positives = 221/571 (38%), Gaps = 92/571 (16%)

Query: 3   SPLNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSST--NSINF-IPRIYQLKVFEVAKR 59
           +P+   +  FG V+  + P+   S   HA+D     T     N    R YQ  + +    
Sbjct: 138 APIQPSQPGFGRVYRGDKPEEAPS--QHAIDREEMKTWLYPTNLGATRDYQFSIVKNGLF 195

Query: 60  RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD-------V 112
            NT+  L TG GKT IA  ++ +  +  K       I+F+APT  LV QQ D       +
Sbjct: 196 NNTLVALPTGLGKTFIAATIMLNYYRWTKD----AKIVFVAPTKPLVAQQVDACFNIVGI 251

Query: 113 IRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFI 172
            R  T     +   A  V+EW S+          V  MTPQ L + +   +     +  +
Sbjct: 252 PRSETTLLTGDTAPALRVNEWSSKR---------VFFMTPQTLQNDISHGYADPKSIVLL 302

Query: 173 VIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR-KGVSSAMDCEGQISEL-- 229
           VIDE H ATG + Y K++K    + ++  ++  +TA+P  + + V   +D  G IS +  
Sbjct: 303 VIDEAHRATGEYAYAKVVKRI-RQYNSYFRLLALTATPGSKIETVQEIIDNLG-ISHIEI 360

Query: 230 --ESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSK 287
             E ++D + +  +   E  V  PS  E C   D        L  KL             
Sbjct: 361 RTEDSIDIRQYVHQRNVEQVVLDPS-DEMCEIKDLFSKALKPLMDKL------------- 406

Query: 288 LQGSQLNCYKDMDDKHKT---LRKQLSDYHAKI-------------------------LY 319
              +Q N Y   D    T   L KQ  ++ A +                         + 
Sbjct: 407 ---TQQNIYFGRDPMAITTYGLVKQQQEWFATVGRKTNPGMQFMMRAIFSILQSLAHAIK 463

Query: 320 CLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
            L+  G+   YE +K     V    E+   Y++  +  + F E +  V        +K  
Sbjct: 464 LLNFHGIRPFYENLKEFRGGVEDMGEKGSKYKKQIVNDQSFQEMMTRV--------EKWL 515

Query: 380 LDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
              GF     V    ++     +L  F+  G +T    I+F E   +A+ + R +     
Sbjct: 516 RTEGF-----VGHPKLAALQDTVLNHFMDAG-ATSTRIIVFSEYRDSAEDIVRVLNVHKP 569

Query: 440 LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
           L   TV      +     +    Q   ++ F+ G+ N+L AT + EEG+ +     ++ +
Sbjct: 570 LIKATVFVGQADSKRSAGMKQSEQIATIQKFKDGEYNVLVATSIGEEGLDIGQVDLIVCY 629

Query: 500 DLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
           D   +    +Q  GR  R+     +L+L RG
Sbjct: 630 DASSSPIRMLQRMGRTGRKRAGNIVLLLMRG 660


>gi|188593364|emb|CAO78751.1| Oikopleura cytoplasmic RNAse III enzyme Dicer [Oikopleura dioica]
          Length = 1814

 Score = 93.6 bits (231), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 133/334 (39%), Gaps = 90/334 (26%)

Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
            IL+ LT     + F++ERLE+LGD  LKY+V+ +L+  Y  +HEGQLS  RS  V N  L
Sbjct: 1294 ILQTLTLSKSSDGFNLERLEMLGDCFLKYSVTVYLYCKYEHQHEGQLSFFRSKKVSNRNL 1353

Query: 1122 HKLGTDRKLQGYIRDSAFDPR----RWVAPGQLS------------------LRPV---- 1155
             +LG    + G +    F        W+ PG  +                    P     
Sbjct: 1354 FRLGVYNDIPGRMVAEQFMQNDTGGNWLPPGYFNKDHAALESDDSEDDDGFEFEPAKGER 1413

Query: 1156 PCECGVDTLEVPLDGKFFTQDTKVV-----------------------------VGKPCD 1186
            P E   D  E+     F  +D  +V                             V KP D
Sbjct: 1414 PQEINEDDSEIESAEDFDGEDISMVDEMLQGSSNQLMSFLDRKKQLPGDEFDISVWKPLD 1473

Query: 1187 M----------------GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADL 1230
                               +++  K+IADC EALIGAY    G+ A    + ++G+    
Sbjct: 1474 TKGKPINTEEPLIYNHYSDQYLTDKSIADCMEALIGAYLKATGIEATQQFLCYMGL---- 1529

Query: 1231 EVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLY 1290
             + L    + + + R+Y        + E KIGY F  K  L +++THAS Q +    N Y
Sbjct: 1530 -IVLPSSALDKLT-RTY-------GEFEKKIGYTFKNKGYLLQSLTHASYQ-YNQVTNCY 1579

Query: 1291 KHLQHCSTLLLS-QITEYVKSFP----KPGETTD 1319
            + L+     +L   IT ++   P     PGE TD
Sbjct: 1580 QRLEFLGDAVLDFLITRHLFDHPTKRFSPGELTD 1613



 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 140/325 (43%), Gaps = 36/325 (11%)

Query: 417 CIIFVERIIA---AKVVERFVKKVPFLTHLT------VAYLTGSTTSVD----ALTPKVQ 463
           C++  ER +A    K+++   +  P L H++      +A +      +D    A   K Q
Sbjct: 411 CVLVNERPVAKYLGKILKDAARADPDLAHISSQALCQLAKVDNPNGHLDEEEIADEKKKQ 470

Query: 464 KEVLESFRGGKVNLLFATDVIEEGMH----VPNCSYVIRFDLPKTVSSYIQSRGRAR--- 516
           +E L  FR  + N+L A    E   H    +P C+ V+RFD P    SY++  G  R   
Sbjct: 471 EEALHKFRTREANILIAQAETENEAHRHFDIPKCNLVVRFDAP---GSYLRYDGGKRLLS 527

Query: 517 -QHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVE 575
            Q+++ + +++ +    Q  ++ +  +          S   EA   + C  +   +++ E
Sbjct: 528 QQNDALYGILINKKEKIQFCRMLEEFKMLEEYLKNRASLAEEAGPAELCLDLDV-THLFE 586

Query: 576 STGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK-YKSAEEAYECELTLPSNAPFQTIV 634
                   + +  LI+     LP D +     + K  + A   ++  L LP+N+  + I+
Sbjct: 587 DMPKDYHNNENGALINSIYSRLPCDSFTQLSVLRKTLQLANGKFQTSLVLPNNSHLRGIL 646

Query: 635 GPTSRNK-NLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSE--------NNLISKKNES 685
               +   N +K+   LEAC KL  +G L+D L  S +E  +         N +S+K + 
Sbjct: 647 LAIQKKPLNCAKRSAALEACTKLRILGELDDFLFNSSKEMDKYKFEIDPFPNPLSRKRKP 706

Query: 686 LPG-AGTTKRKELHGTTPIRALSGR 709
            PG  G  KR++ +     R+L  +
Sbjct: 707 PPGMEGGPKRRQKYPRHIPRSLRAK 731



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 2/59 (3%)

Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIEL 1380
            ++ PK LGD+ ES+ GA+ +D+ +NLD VW +++P+L   +    +  P  P+REL+EL
Sbjct: 1690 IEVPKVLGDIYESVAGAIYLDSGMNLDAVWGVYRPMLQKYIDKYSINPPRSPIRELLEL 1748



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 10/143 (6%)

Query: 917  TGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPH 976
            T   + + EI  +   +SPF     DD ++F  Y+ +++ + L +  QPLL +  +    
Sbjct: 933  TQNRFYVAEIQYDMDPDSPFPA---DDYESFRQYYMQRWALCLTNEKQPLLDVDHTDCRL 989

Query: 977  NLLV-NFNDGGGSGKGSKSGMNTKKPQM-----HVHMPPELLVRVDVPISVVKSLYLLPS 1030
            NLL   F    G    + S +  K+ +        ++ PE+L    V  S+ +    LPS
Sbjct: 990  NLLTPRFVTQKGRALPA-SALEKKRQKYEDKANRQYLIPEILDVHPVSASLWRKAVCLPS 1048

Query: 1031 VMQRLESLMLASQLREEINCHSR 1053
            ++ R+  L+ A  LR  I+  +R
Sbjct: 1049 ILHRITCLLAAEDLRRRISRQTR 1071


>gi|19114536|ref|NP_593624.1| ATP-dependent 3' to 5' DNA helicase (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|74698622|sp|Q9HE09.1|MFH2_SCHPO RecName: Full=Putative ATP-dependent RNA helicase mfh2; AltName:
           Full=FancM homolog protein 2
 gi|12038920|emb|CAC19734.1| ATP-dependent 3' to 5' DNA helicase (predicted)
           [Schizosaccharomyces pombe]
          Length = 783

 Score = 93.6 bits (231), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 131/518 (25%), Positives = 213/518 (41%), Gaps = 80/518 (15%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ +  E A   N +  L TG GKT IA +++ +  +    +     IIFLAPT  L+
Sbjct: 112 RNYQKEFCEQALFHNLLLALPTGLGKTFIAAVVMLNYFRWFPESK----IIFLAPTKPLL 167

Query: 107 HQQYDVIRVHTDFEVEEYYGA----KGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
            QQ    RV          GA     G    D + +  E N   V  MTPQ L + L++ 
Sbjct: 168 LQQ----RVACSNVAGMSPGATAELNGEVSPDRRLF--EYNTKRVFFMTPQTLQNDLKEH 221

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-VVRKGVSSAMD 221
            L    +  ++ DE H ATGNH Y ++M+    +S++  +V G+TA+P      V   +D
Sbjct: 222 LLDAKSIICLIFDEAHRATGNHSYAQVMRAVL-RSNSHFRVLGLTATPGSSTASVQKVVD 280

Query: 222 CEGQISEL----ESTLDSQVFTIEDK---------TEMEV----FVPSAKESCRFYDQSK 264
           C   IS+L    E ++D + +    K         +EM +    F    +    F  Q K
Sbjct: 281 C-LHISKLIVRNEESIDIRSYVFHKKIQLIKVTISSEMNILKSDFANLYRPYFNFLRQKK 339

Query: 265 F------CGSDLKGKLEVSWSKFDASLSKLQGSQ----LNCYKDMDDKHKTLRKQLSDYH 314
                  C +     L VS  K+  S   +Q  +    ++C+             L    
Sbjct: 340 LIPINCECLNIKAYTLFVSLRKYSFSSKNVQSKEKSKIMSCFT------------LLISC 387

Query: 315 AKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI-GSAL- 372
           A I Y LD  G+I  Y+ +     K          +  +S    ++LE + + I G +L 
Sbjct: 388 AHITYLLDCHGIIQFYQKLVETKNKAEGKGSGQSFWLFTSKPFAFYLEHLHNKIQGLSLN 447

Query: 373 -PLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE 431
            P  + + L+   ++ K    GY + +    + +F  F  + + +    +        + 
Sbjct: 448 HPKMNHL-LELLKEHFKDTSEGYQNQR----VMIFTEFRNTAEYITTTLL-------AIR 495

Query: 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
             V+   F+     AY TG       +    QKE ++ FR G +N L AT + EEG+ + 
Sbjct: 496 PMVRASLFIGQANSAYSTG-------MNQMQQKETIDQFRAGVINTLVATSIGEEGLDIG 548

Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLE 527
           +   +I +D   +    IQ  GR  +  S   F+L+ E
Sbjct: 549 DTDMIICYDASSSPIRTIQRMGRTGRKKSGKVFVLLTE 586


>gi|391873779|gb|EIT82787.1| dsRNA-specific nuclease Dicer [Aspergillus oryzae 3.042]
          Length = 1089

 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 8/214 (3%)

Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
           + Q E L+ FR G ++L+  TD +EEGM +P C+ V+ F+    + S+IQ RGRAR+  S
Sbjct: 180 RSQMETLQKFRDGVLDLIITTDALEEGMDIPACNTVLNFNCILNLKSFIQRRGRARREQS 239

Query: 521 QFILMLERGNLKQRNKLFDIIRSE--RSVTDTALSRDPEACFLKACTYVKTKSYIVESTG 578
           +F + L+     +   L     SE  R + D   +  P++  L     ++       STG
Sbjct: 240 KFFIFLQDEEDLKNVSLLQFRESELVRKLQDEGRTVLPDS--LNHDERLRDSLAFSSSTG 297

Query: 579 ASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE-EAYECELTLPSN--APFQTIVG 635
           A +T  ++++ ++R+C  LP+  + +  P F Y++ E    +  + LPSN     QT   
Sbjct: 298 AQMTMGNAISHLYRFCGELPAQPFVSNSPAFSYETDECGQVQAIVRLPSNLDPSLQTFKS 357

Query: 636 -PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
                 K  +K+   L+A + L     +NDH LP
Sbjct: 358 LRKWAKKKWAKEDAALQAYKALFHARLINDHFLP 391



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 120/274 (43%), Gaps = 38/274 (13%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEI--NCHSRNFHIPSSLILEALTTLGCCES 1074
            +P    ++  L PS++ R+   ++A +LR++I  N  +  F     L+  AL+       
Sbjct: 637  LPSIYAEAALLAPSIIHRIGVYLIAEKLRKQIFSNPQAARFE-RMDLLCIALSPTDDMHR 695

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
                 +  +GD+++K+ ++  LFL +   HEG L++ +   V ++ L           Y+
Sbjct: 696  HEFRSMAFIGDAIVKFLITRQLFLHHTLWHEGLLTSVKDSIVSDTGLAAALCHSGFGSYL 755

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
              + F+ +RW        RP                  F   T   + K      R++G+
Sbjct: 756  ITTRFNGKRW--------RPS-----------------FVSTT---LSKSGPTRRRYVGA 787

Query: 1195 KTIADCAEALIGAYYVGGGL----IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPR 1250
             T+AD  +AL GA ++  GL    I A  M+    I +   +SL D   ++ S  S    
Sbjct: 788  ATVADMVKALAGAAFLDNGLDQAFICAAAMIP--KIKSWTTISLYDGTYSK-SRPSKSLG 844

Query: 1251 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFY 1284
             + I D+E+ +GY F+ K L  E++TH S    Y
Sbjct: 845  ASTIIDLEALLGYTFSDKSLAIESMTHPSCVGLY 878


>gi|315426340|dbj|BAJ47980.1| helicase-associated endonuclease for fork-structured DNA
           [Candidatus Caldiarchaeum subterraneum]
 gi|315426365|dbj|BAJ48004.1| helicase-associated endonuclease for fork-structured DNA
           [Candidatus Caldiarchaeum subterraneum]
 gi|343485150|dbj|BAJ50804.1| helicase-associated endonuclease for fork-structured DNA
           [Candidatus Caldiarchaeum subterraneum]
          Length = 694

 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 119/485 (24%), Positives = 204/485 (42%), Gaps = 56/485 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  + E A R NT+ VL T  GKT+IA ++  ++    +  G +  I+ +APT  LV
Sbjct: 16  REYQRSMVEEALRGNTLVVLPTALGKTVIAELVAAELLH--RHPGCR--ILVMAPTKPLV 71

Query: 107 HQQYDVIRVHTDFEVEEYYGAKG-VDE------WDSQCWQKEINKNDVLVMTPQILLDAL 159
            Q       H +   +E     G V E      W S   +       ++  TPQ   +  
Sbjct: 72  LQHRQSFLKHLNISEDEGIAITGEVSESVRKMAWGSPSVR-------IVFSTPQTAFNDY 124

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSA 219
           R+ ++ L+    +V DECH +   + YT++  E+  +    P+V G+TASP         
Sbjct: 125 RRGWIRLEEFALLVFDECHRSRSRYAYTRLASEYVRRCPW-PRVLGLTASP--------- 174

Query: 220 MDCEGQISELESTL--DSQVFTIEDKTEMEVFVPSAK-ESCRFYDQSKFCGSDLKGKLEV 276
              E ++ E+   L  +  V+  E+  E+  ++P  K +  R     ++         EV
Sbjct: 175 GSEEEKVLEVVKNLWVEKIVWRTEEDEEVSSYIPGVKVDWVRVEIPHEYE--------EV 226

Query: 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE--LGLICAYEAVK 334
             +  +A  ++++  Q      +  +H   R  L    A+I   +D    G    Y A+ 
Sbjct: 227 RKAIREAIENRVRHLQRFGVVRVPVEHVN-RTILVQAMARIRAEIDSGVKGQNMHYMALI 285

Query: 335 ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGY 394
             +  +  AQE  E     SL  + +L EV+H       L     L    D+ K + L  
Sbjct: 286 SEILSLYHAQELIESQHIHSL--REYLREVMHS-----ELRSHRMLSGSEDFRKIIQLAA 338

Query: 395 ISTKLHELLQLFLS-----FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLT 449
            S   H  ++  +        +      ++F      A+V+   + ++ +   + +    
Sbjct: 339 KSQADHPKIEALVQRISQHLSEKPDDRIMVFANIRNTAEVIVSRLTELGYRARMFIGKGE 398

Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
           G T     +T + Q  +L+ FR G  N+L AT + EEG+ +P C YVI ++   +   YI
Sbjct: 399 GKTGP--KMTQQEQIRLLKEFREGVFNILVATSIGEEGLDIPECGYVIFYEPAISGIRYI 456

Query: 510 QSRGR 514
           Q RGR
Sbjct: 457 QRRGR 461


>gi|83774779|dbj|BAE64902.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1256

 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 8/214 (3%)

Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
           + Q E L+ FR G ++L+  TD +EEGM +P C+ V+ F+    + S+IQ RGRAR+  S
Sbjct: 347 RSQMETLQKFRDGVLDLIITTDALEEGMDIPACNTVLNFNCILNLKSFIQRRGRARREQS 406

Query: 521 QFILMLERGNLKQRNKLFDIIRSE--RSVTDTALSRDPEACFLKACTYVKTKSYIVESTG 578
           +F + L+     +   L     SE  R + D   +  P++  L     ++       STG
Sbjct: 407 KFFIFLQDEEDLKNVSLLQFRESELVRKLQDEGRTVLPDS--LNHDERLRDSLAFSSSTG 464

Query: 579 ASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE-EAYECELTLPSN--APFQTIVG 635
           A +T  ++++ ++R+C  LP+  + +  P F Y++ E    +  + LPSN     QT   
Sbjct: 465 AQMTMGNAISHLYRFCGELPAQPFVSNSPAFSYETDECGQVQAIVRLPSNLDPSLQTFKS 524

Query: 636 -PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
                 K  +K+   L+A + L     +NDH LP
Sbjct: 525 LRKWAKKKWAKEDAALQAYKALFHARLINDHFLP 558



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 120/274 (43%), Gaps = 38/274 (13%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEI--NCHSRNFHIPSSLILEALTTLGCCES 1074
            +P    ++  L PS++ R+   ++A +LR++I  N  +  F     L+  AL+       
Sbjct: 804  LPSIYAEAALLAPSIIHRIGVYLIAEKLRKQIFSNPQAARFE-RMDLLCIALSPTDDMHR 862

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
                 +  +GD+++K+ ++  LFL +   HEG L++ +   V ++ L           Y+
Sbjct: 863  HEFRSMAFIGDAIVKFLITRQLFLHHTLWHEGLLTSVKDSIVSDTGLAAALCHSGFGSYL 922

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
              + F+ +RW        RP                  F   T   + K      R++G+
Sbjct: 923  ITTRFNGKRW--------RPS-----------------FVSTT---LSKSGPTRRRYVGA 954

Query: 1195 KTIADCAEALIGAYYVGGGL----IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPR 1250
             T+AD  +AL GA ++  GL    I A  M+    I +   +SL D   ++ S  S    
Sbjct: 955  ATVADMVKALAGAAFLDNGLDQAFICAAAMIP--KIKSWTTISLYDGTYSK-SRPSKSLG 1011

Query: 1251 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFY 1284
             + I D+E+ +GY F+ K L  E++TH S    Y
Sbjct: 1012 ASTIIDLEALLGYTFSDKSLAIESMTHPSCVGLY 1045



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 16/126 (12%)

Query: 94  KLIIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDS-QCWQKEINKNDVLVMT 151
           +LI FL PTV L +Q    I  H        +     VD W + + W   +    V + T
Sbjct: 6   QLIWFLCPTVALCNQHVRTITAHVPPMWCRSFTSNDNVDHWGTVETWNIALASVKVAIST 65

Query: 152 PQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH---KSDNK--PKVFGM 206
            Q+L DAL   F+++D +  I+ DE     GN    KIM+E+YH   +S +K  P + G+
Sbjct: 66  YQVLYDALVHRFVTMDRLSLIIFDE-----GN----KIMREYYHTEPQSHDKQTPYILGL 116

Query: 207 TASPVV 212
           TASP++
Sbjct: 117 TASPIL 122


>gi|405969612|gb|EKC34573.1| Putative ATP-dependent RNA helicase DDX58 [Crassostrea gigas]
          Length = 902

 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 115/234 (49%), Gaps = 31/234 (13%)

Query: 15  VHSPNPPDMGSSGHDHAVDGPSSSTNSIN----------FIPRIYQLKVFEVA-KRRNTI 63
           ++S +     SS  D   DGP S  + IN             R YQL++ E+A   RNTI
Sbjct: 183 LYSTDEESEVSSDKD---DGPRSEKD-INEATEKETFPTLTMRNYQLELAEIALSGRNTI 238

Query: 64  AVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI-RVHTDFEVE 122
              ETG GKT +A+ L +   Q + S      ++FLA T  LV QQY+   R    ++V 
Sbjct: 239 ICAETGTGKTYVALYLTQ---QHLASKN-DACVVFLARTNALVEQQYEKFSRFLYKYKVY 294

Query: 123 EYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATG 182
                K           KE   + VL MTPQILL+ +    +SL  V  +++DECHH   
Sbjct: 295 HLKTDKTAAMGRKLAMAKE--NHQVLFMTPQILLNNINSKQISLQEVSLLILDECHHTRK 352

Query: 183 NHPYTKIMKEFYH-KSDNK----PKVFGMTASPVVRKGVSSAMDCEGQISELES 231
             PY  +MK++ H K D+K    P+V G+TA+  V  G SS +D  G +S + S
Sbjct: 353 REPYNNVMKQYLHLKRDSKKTSLPQVLGLTATIGV--GKSSTLD--GAVSHILS 402



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 6/103 (5%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
           +IFVE    A  + +++ +   +     A  TGS      +  + + + L+ +R G++NL
Sbjct: 603 MIFVETRATAFALAKYITEELKMMGYRAAPFTGS------MLEEEKTDTLKKYRKGEINL 656

Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
           L AT V  EG+ VP+ +++I ++     +  +Q  GRAR+  S
Sbjct: 657 LVATSVGSEGIDVPDSNFIITYNYTGNEADIMQMSGRARRQGS 699


>gi|194374847|dbj|BAG62538.1| unnamed protein product [Homo sapiens]
          Length = 661

 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 124/526 (23%), Positives = 229/526 (43%), Gaps = 83/526 (15%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +    F++++         
Sbjct: 4   RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGEEFRRML--------- 54

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL----RK 161
              ++ V  +  D      +G        ++C       +D+L+ T ++L  AL     +
Sbjct: 55  -DGRWTVTTLSGDMGPRAGFGHL------ARC-------HDLLICTAELLQMALTSPEEE 100

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKGVS 217
             + L +   IV+DECHH   +  Y  IM ++      ++   P+V G+TASP    G  
Sbjct: 101 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP----GTG 156

Query: 218 SAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
            A   +G I+   +L + LD+    +  +         +++ C+ Y+       D  G L
Sbjct: 157 GASKLDGAINHVLQLCANLDTWCI-MSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDL 215

Query: 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVK 334
                     L KL   Q++ + +M +  +    Q+  Y  +++  L E   +   +  +
Sbjct: 216 ----------LKKLM-DQIHDHLEMPELSRKFGTQM--YEQQVVK-LSEAAALAGLQEQR 261

Query: 335 ICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
           +    + +  +   I+         ++LQ  Y  E   HV  + +  A++  L   FD  
Sbjct: 262 VYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE---HVTKTQILCAERRLLAL-FDDR 317

Query: 388 KAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAK------VVERF 433
           K  +L +++T      KL E+L+  L   F  S     IIF     +A         ++ 
Sbjct: 318 KN-ELAHLATHGPENPKL-EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQG 375

Query: 434 VKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           ++ V     L +    G+++    +T + Q+EV++ F+ G +NLL AT V EEG+ +P+C
Sbjct: 376 LQTVDIRAQLLIG--AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC 433

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           + V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L +
Sbjct: 434 NVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELIN 479


>gi|395855810|ref|XP_003800342.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 isoform 2
           [Otolemur garnettii]
          Length = 931

 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 112/212 (52%), Gaps = 15/212 (7%)

Query: 44  FIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           F PR YQL++   AK+ +NTI    TG GKT +++++ +D  +   S G ++ ++F A  
Sbjct: 242 FKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEDHLKKF-SQGQRRKVVFFANQ 300

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           + +  QQ  V   + +    +  G  G    ++   Q  +  ND++ +TPQIL++ L+  
Sbjct: 301 IPVYEQQKSVFSKYFERLGYKVAGISGATAENAPVEQI-VENNDIIFLTPQILVNNLKNG 359

Query: 163 FL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVV--RK 214
            + SL +   ++ DECH+ +  HPY  IM  +  +     SD  P+V GMTAS  V   K
Sbjct: 360 TIPSLSVFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSDPLPQVIGMTASVGVGDAK 419

Query: 215 GVSSAMDCEGQISELESTLD-SQVFTIEDKTE 245
               AMD    I  L ++LD S++ T++D  E
Sbjct: 420 NTDEAMD---YICRLCASLDVSEIVTVKDNLE 448



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVLESF-RGGK 474
           I+FV+       ++++++    L  L    LTG   T     +T   QK VL +F   G 
Sbjct: 637 ILFVKTRALVDALKKWIEGNSRLNFLKPDILTGRCKTNQNIGMTLPAQKCVLNTFGTNGA 696

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR 534
            N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+    ++ ++
Sbjct: 697 NNILIATSVADEGIDIVQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNADVIEK 756

Query: 535 NKLFDIIRSERSVTDTALS 553
            K+   +  E+ + D+ L+
Sbjct: 757 EKIN--LYKEKMMNDSILN 773


>gi|393215463|gb|EJD00954.1| ribonuclease III [Fomitiporia mediterranea MF3/22]
          Length = 1411

 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 28/240 (11%)

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
           +Q +VL++FR G  NLL AT   E+ + + + + VIRFDL ++  SY   R RAR     
Sbjct: 254 LQSDVLDAFRTGVYNLLIATKFAED-LEICSATIVIRFDLFESQVSYAHCRARARGQQCH 312

Query: 522 FILMLERGNLKQRNKLFDIIRSERS-------VTDTALSR----------DPEACFLKAC 564
            I M ERG+   R  L D+ R +R        VT +  S           DP        
Sbjct: 313 LIHMAERGSDVHRRILADVARIDRRMERWVQRVTTSVGSAIPPVPLRETVDPYRSDSDDE 372

Query: 565 TYVKTKSYIVE-STGASVTTDSSVNLIHRYCEMLPSD---KYYTPKPIFKYK------SA 614
                +S++ + +T   +    ++ +++R+   LP+    +    KP+F+Y+      S+
Sbjct: 373 DNDDPESFVQDPTTSGRIFVQDAMTVVYRFASQLPAAGDVERRLNKPLFEYEELQDGPSS 432

Query: 615 EEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPS 674
           +  Y C + LP  AP + + G  S +++ ++++ C + C +L+ +GAL+  L P    P+
Sbjct: 433 KTMYICTVLLPPGAPLRRVSGSPSPSRSQARRMACYQTCYELYSLGALDYRLFPRPPLPA 492



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 4/149 (2%)

Query: 1006 HMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEA 1065
            ++ PEL V+  +P SV +++ LLPS++ +LE  +L  +L  +   HS    I    +L A
Sbjct: 800  YLIPELCVKSTIPASVYRTISLLPSIISKLEDFLLIKELNAKYFDHS----IAEYDLLAA 855

Query: 1066 LTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG 1125
            +++         ERLELLGD+ LKY  S +LF+T+P  HEG L   R   + N +L +  
Sbjct: 856  VSSPAAFVDVDYERLELLGDAYLKYLSSVYLFVTFPTLHEGALHVSRQRIISNRSLLRNA 915

Query: 1126 TDRKLQGYIRDSAFDPRRWVAPGQLSLRP 1154
                L  YI+     PR W  P  +  RP
Sbjct: 916  NRCGLPQYIQSKPLAPRMWCPPNFIVYRP 944



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 5/105 (4%)

Query: 1190 RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDA---DLEVSLVDDCITRASLRS 1246
            +W+G K +AD AEA+IGA YV GG   AL + K L +     D         +      +
Sbjct: 1047 QWLGDKAVADVAEAIIGAAYVTGGREIALKVTKALNVPVPHIDRWSDFGRKALAPPPEVT 1106

Query: 1247 YVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ--EFYCYQNL 1289
               R   I+ +E+ IG++F    LL +A+THAS+   E   Y+ L
Sbjct: 1107 ARLRTGSIQAVEAIIGHQFNHPHLLAQALTHASIHGNEMTSYERL 1151


>gi|380489822|emb|CCF36443.1| type III restriction enzyme, partial [Colletotrichum higginsianum]
          Length = 1024

 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 124/524 (23%), Positives = 203/524 (38%), Gaps = 87/524 (16%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  + +     NT+  L TG GKT IA  ++ +  +  K       I+F+APT  LV
Sbjct: 117 RDYQFSIVKNGLFNNTLVALPTGLGKTFIAATVMLNYYRWTKD----AKIVFVAPTKPLV 172

Query: 107 HQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            QQ D       + R  T     +   A  VDEW S+          V  MTPQ L + +
Sbjct: 173 AQQVDACFNIVGIPRSETTLLTGDTAPALRVDEWSSKR---------VFFMTPQTLQNDI 223

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR-KGVSS 218
              +     +  +VIDE H ATG + Y K++K+   + +   ++  +TA+P  + + V  
Sbjct: 224 SHGYADPKSIVLLVIDEAHRATGEYAYAKVVKKI-RQFNPYFRLLALTATPGSKIETVQE 282

Query: 219 AMDCEGQISEL----ESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
            +D  G IS +    E ++D + +  +   E  V  PS  E C   D        L  KL
Sbjct: 283 IIDNLG-ISHIEIRTEDSIDIRQYVHQRNVEQVVLDPS-DEMCEIKDLFSKALKPLMDKL 340

Query: 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKT---LRKQLSDYHAKI-------------- 317
                           +Q N Y   D    T   L KQ  D+ A +              
Sbjct: 341 ----------------TQQNIYYGRDPMAITTYGLVKQQQDWFASVGRKTNPGVQFMMRA 384

Query: 318 -----------LYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLH 366
                      +  L+  G+   YE +K    +     ++   Y++  +  K F E +  
Sbjct: 385 IFSILQSLAHAIKLLNFHGIRPFYENLKEFRSETEDRGDKGSKYKKQIVNDKSFQEMMTK 444

Query: 367 VIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIA 426
           V        +K     GF     V    ++     +L  F+  G+ T    I+F E   +
Sbjct: 445 V--------EKWLRTEGF-----VGHPKLAALQDTVLNHFMDAGQ-TSTRIIVFSEYRDS 490

Query: 427 AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEE 486
           A+ + R +     L   TV      +     +    Q   ++ F+ G+ N+L AT + EE
Sbjct: 491 AEDIVRVLNVHKPLIKATVFVGQADSKRSAGMKQSEQIATIQKFKDGEYNVLVATSIGEE 550

Query: 487 GMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
           G+ +     ++ +D   +    +Q  GR  R+     +L+L RG
Sbjct: 551 GLDIGQVDLIVCYDASSSPIRMLQRMGRTGRKRAGNIVLLLMRG 594


>gi|395855808|ref|XP_003800341.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 isoform 1
           [Otolemur garnettii]
          Length = 926

 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 112/212 (52%), Gaps = 15/212 (7%)

Query: 44  FIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           F PR YQL++   AK+ +NTI    TG GKT +++++ +D  +   S G ++ ++F A  
Sbjct: 242 FKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEDHLKKF-SQGQRRKVVFFANQ 300

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           + +  QQ  V   + +    +  G  G    ++   Q  +  ND++ +TPQIL++ L+  
Sbjct: 301 IPVYEQQKSVFSKYFERLGYKVAGISGATAENAPVEQI-VENNDIIFLTPQILVNNLKNG 359

Query: 163 FL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVV--RK 214
            + SL +   ++ DECH+ +  HPY  IM  +  +     SD  P+V GMTAS  V   K
Sbjct: 360 TIPSLSVFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSDPLPQVIGMTASVGVGDAK 419

Query: 215 GVSSAMDCEGQISELESTLD-SQVFTIEDKTE 245
               AMD    I  L ++LD S++ T++D  E
Sbjct: 420 NTDEAMD---YICRLCASLDVSEIVTVKDNLE 448



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVLESF-RGGK 474
           I+FV+       ++++++    L  L    LTG   T     +T   QK VL +F   G 
Sbjct: 632 ILFVKTRALVDALKKWIEGNSRLNFLKPDILTGRCKTNQNIGMTLPAQKCVLNTFGTNGA 691

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR 534
            N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+    ++ ++
Sbjct: 692 NNILIATSVADEGIDIVQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNADVIEK 751

Query: 535 NKLFDIIRSERSVTDTALS 553
            K+   +  E+ + D+ L+
Sbjct: 752 EKIN--LYKEKMMNDSILN 768


>gi|390463706|ref|XP_003733083.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 [Callithrix
           jacchus]
          Length = 578

 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 134/526 (25%), Positives = 222/526 (42%), Gaps = 73/526 (13%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + +   + +  +G K         VHL
Sbjct: 4   RPYQQEVITPALEGKNIIIWLPTGAGKTRAAAYVARQHLETV--DGAK---------VHL 52

Query: 106 VHQQYDVIRVHTDFE-----VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL- 159
           V Q  +      D       +    G +      ++C       +D+L+ T ++L  AL 
Sbjct: 53  VTQHGEEFSRMLDGRWTMTTLSGDMGPRAAFGHLARC-------HDLLICTAKLLQMALT 105

Query: 160 ---RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVV 212
               +  + L     IV+DECHH   +  Y  IM ++      ++   P+V G+TASP  
Sbjct: 106 SPEEEEHVELTAFSLIVVDECHHTHKDTVYNIIMSQYLELKLQRARPLPQVLGLTASP-- 163

Query: 213 RKGVSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269
             G   A   +G I+   +L + LD+   T   +          ++ C+ YD  +    D
Sbjct: 164 --GTGGASKLDGAINHVLQLCANLDTWCIT-SPQNCFPQLQEHNQQPCKQYDLCQRRSQD 220

Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
             G L          L KL   Q++ + +M +  +   KQ  +     L     L  +  
Sbjct: 221 PFGDL----------LKKLM-DQIHDHLEMPELSRDFGKQTYEQQVVKLSETAALAGLLE 269

Query: 330 YEAVKICLEKVLKAQEECEIYRQ----SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
                + L +   A    +  R     ++LQ  Y  E   H   + +  A++  L    D
Sbjct: 270 QRVYALHLRRYNDALLIHDTVRAVDALAALQNFYQRE---HATKTQILCAERWLLALFND 326

Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKV 437
           +     L +++T      KL E+L+  L   F  S     IIF     +A  +  ++++ 
Sbjct: 327 HKDM--LAHLATHGLENPKL-EMLEKILQKQFRSSDSPRGIIFTRTRQSAHSLLLWLQQQ 383

Query: 438 PFLTHLTV--AYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           P L  + +    L GS  S     +T K Q+EV+  FR G +NLL AT V EEG+ +P C
Sbjct: 384 PGLQTVDIRPQLLIGSGNSSQRTHMTQKDQQEVIRKFRDGTLNLLVATSVAEEGLDIPQC 443

Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
           + V+R+ L     S +Q+RGRAR   S +  +  +G+ + + +L +
Sbjct: 444 NVVVRYGLLTNEISMVQARGRARAGESVYSFVATKGSRELQRELIN 489


>gi|302412697|ref|XP_003004181.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261356757|gb|EEY19185.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 1240

 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 123/519 (23%), Positives = 210/519 (40%), Gaps = 65/519 (12%)

Query: 189 IMKEFYHKSDNK----PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DK 243
           IM  FYH         P V G+TASP++R  +      EG +  LE TLDS   T    +
Sbjct: 2   IMMNFYHPRKQSALWVPHVLGLTASPIMRSRL------EG-LEALERTLDSVCVTPRLHR 54

Query: 244 TEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDK- 302
            ++   V     S   Y+ +   G    G   VS      +   +   Q      + DK 
Sbjct: 55  DDLMTHVKRPTVSYVHYETTDAKG----GPTPVSILSLREACRNMDIRQDPFILHLRDKG 110

Query: 303 --------------HKTL-RKQLSDYHAKILYCLDELGLICA-YEAVKICLEKVLKAQEE 346
                         H+T  ++Q+  +  + L  L +LG   A Y   K+  + +   +  
Sbjct: 111 TDRARRELIKVLTSHETYSQQQMKSFFNQSLRVLRDLGPWAAEYYIWKVISDFLAITEAS 170

Query: 347 CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLF 406
                Q   + K +L  +L  I  + P    +                 S K   L++  
Sbjct: 171 DHRMNQWKTEEKQYLANILRQISISEPQVSML------------STHNTSNKFMMLIE-H 217

Query: 407 LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL--TVAYLTGSTTSV-------DA 457
           +S   +     IIFV+    A ++   ++  P   ++  +V  + G++  +       D 
Sbjct: 218 MSSKATDGTAGIIFVKERSTAAMLAHVIESHPLTPNMYSSVGVVVGTSNHLVRKKDMWDL 277

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
                + E L  FR G +NLL AT V+EEG+ VP C+ VI FD P+ + +++Q RGRAR+
Sbjct: 278 SRAAHETEPLLQFRSGHLNLLIATSVLEEGIDVPACNLVICFDEPENLKAFVQRRGRARK 337

Query: 518 HNSQFILMLE-RGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVES 576
            +S  +++L   G++ Q  +  +         +    R  E   ++A    + + YIVES
Sbjct: 338 KDSSLVVLLPGTGHVPQDWESMEATMRTHYEKERREIRIMEQ--IEASESTEYEEYIVES 395

Query: 577 TGASVTTDSSVNLIHRYCEMLPSDKYYTPKP--IFKYKSAEEAYECELT--LPSNAPFQT 632
           T A +  +++   +  +C  L   ++   +P  I +    EE     +T  LPS  P   
Sbjct: 396 TNARLDFENAKAHLSHFCGQLSPGEFIDKRPEYIPRVVDDEEPPSLRVTVLLPSYIPAAV 455

Query: 633 IVGPTSRNKNLSKQL---VCLEACEKLHQVGALNDHLLP 668
               + R+     Q       +A   L+  G +N+H+LP
Sbjct: 456 RHAESRRSWKSEHQASKDAAFQAYLALYDAGLVNEHMLP 494



 Score = 80.1 bits (196), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 123/285 (43%), Gaps = 53/285 (18%)

Query: 1000 KPQMHVHMPPELLVRVD-VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIP 1058
            KP   V+  P    ++D +P+       L+PS+   +E  ++A QL   +     NF  P
Sbjct: 723  KPYARVYPAP--WAKIDTIPLDHAYFGALIPSISHIVEVRLVAEQLSSSL-LRDLNFSDP 779

Query: 1059 SSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118
            S L+L A++T G  E+ + ERLE LGDS+LK   + +             +A     V N
Sbjct: 780  S-LVLTAISTKGSLEATNYERLEFLGDSILKLCTTVN-------------AAALHGLVSN 825

Query: 1119 STLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTK 1178
            S L +   D  L  ++    F  R W        RP+     ++T               
Sbjct: 826  SRLCRAALDAGLDKFVLTENFTCRTW--------RPIYVNGMLET--------------- 862

Query: 1179 VVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDC 1238
                   D G R + +KT+AD  EALIGA Y+ GGL  A+  +       +LE  L+  C
Sbjct: 863  ----GARDSGPREISTKTLADVVEALIGAAYIDGGLAKAIGCISIFL--RELEWKLLPAC 916

Query: 1239 ITRASLRSYVPRINEIK----DIESKIGYEFTVKFLLQEAITHAS 1279
              +  L S  P    +      +E  I Y FT K LL E+ITHAS
Sbjct: 917  --QEILHSLAPPDVSLPPMLVPLEELIDYTFTKKILLIESITHAS 959


>gi|431890614|gb|ELK01493.1| Putative ATP-dependent RNA helicase DHX58 [Pteropus alecto]
          Length = 678

 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 133/547 (24%), Positives = 227/547 (41%), Gaps = 87/547 (15%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TG+GKT  A  + K   + +     +  ++ L   VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVAKRHLETVD----RAKVVVLVNRVHL 59

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q Y+      D  + +    G  G        +     KND+L+ T ++L  AL    
Sbjct: 60  VTQHYEEFSHMLDGRWAITTLRGDMG----PRPGFGHLARKNDLLICTAELLQMALVSTE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKG 215
            +  + L+    +V+DECHH   +  Y  I+  +      +    P+V G+TASP    G
Sbjct: 116 EEEHVELNEFSLLVVDECHHTHKDTVYNIILSRYLQHKLQRTWPLPQVLGLTASP----G 171

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A + +G I    +L ++LD+    +  +T         ++ C+ YD    C      
Sbjct: 172 TGRATNLDGAIDHILQLCASLDTWRI-MSPQTYRPQLQEHNRQPCKQYD---LCHRR--- 224

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
               S   F   L KL  +Q++ + +M +  +    Q+  Y  +++    EL    A   
Sbjct: 225 ----SQDPFGDMLKKLM-NQIHDHLEMTELSRDFGTQM--YEQQVV----ELSQTAAEAG 273

Query: 333 VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV-- 390
           ++         Q+              F+ + +  + +   L D  F D   D    V  
Sbjct: 274 LQ---------QQRVYALHLRRYNDALFIHDTVRAVDALAALQD--FYDRERDTKTQVLR 322

Query: 391 --------------DLGYIST------KLHELLQLF-LSFGKSTQVLCIIFVERIIAAKV 429
                         +L  ++T      KL  L Q+    FG       I+F     +A  
Sbjct: 323 AERWLLALFDDHKNELALLATQGPENPKLEMLEQILKKQFGNPGNPRGIVFTCTRQSAHS 382

Query: 430 VERFVKKVPFLTHLTV--AYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIE 485
           +  ++ + P L  + +    L G+  S     +T + Q+EV+  FR G +NLL AT V E
Sbjct: 383 LLLWLWQQPGLQTVDIRAQLLIGAGNSSRGTTMTQRDQQEVIRKFRVGTLNLLVATSVAE 442

Query: 486 EGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGN----LKQRNKLFDII 541
           EG+ +P C+ V+R+ L     S +Q+RGRAR + S +  +   G+     +Q N+  +I+
Sbjct: 443 EGLDIPQCNVVVRYGLLTNEISMVQARGRARANESVYSFVATHGSRELQREQTNEALEIL 502

Query: 542 RSERSVT 548
             +R+VT
Sbjct: 503 -MKRAVT 508


>gi|330794390|ref|XP_003285262.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
 gi|325084804|gb|EGC38224.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
          Length = 2292

 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 104/195 (53%), Gaps = 4/195 (2%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           P  YQ++ F    +RN+I VL TG GKT+I+++ + ++ + +      K+ +FL  +VHL
Sbjct: 31  PHNYQIEAFYECIKRNSIIVLPTGTGKTLISILALLEMHR-LNYPINNKVALFLVSSVHL 89

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V QQ + I  +T   V     +   ++ + + +  +    DVLV TPQ ++++++  F+ 
Sbjct: 90  VKQQAESIEQYTKLRVITM-SSNTSNKIERRQFLGKKESYDVLVATPQTVINSIKNGFIF 148

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN--KPKVFGMTASPVVRKGVSSAMDCE 223
           ++    I+ DE HHA G   Y+ +M  +   SD   KP++ G+TAS      +    +  
Sbjct: 149 IEDFHIIIFDEVHHAVGESSYSMLMDIYTSVSDGAAKPRIIGLTASISHSSVIFDVENAI 208

Query: 224 GQISELESTLDSQVF 238
            +I +LE  + S VF
Sbjct: 209 TEIGQLEKRMCSSVF 223



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 9/150 (6%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
           CIIFVE     K +   ++K   +       + G T   D +T + Q + ++ F+ G   
Sbjct: 416 CIIFVETRTIGKRLINLLRKDEIINTYKPKMIFG-TAGEDGMTIRKQIKRVDDFKNGSCE 474

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNK 536
           +L AT+V+EEG+ +P C  VI FD   +V S IQ RGR R   + FI M+   N K +++
Sbjct: 475 ILIATNVLEEGIDIPECKLVICFDSIYSVRSLIQRRGRERTQ-TNFIAMI---NSKDKSR 530

Query: 537 LFDIIRSE----RSVTDTALSRDPEACFLK 562
           +  ++ SE    R++     +R+  +  +K
Sbjct: 531 IERVMNSELLMTRAIIQILENRNSPSLLIK 560


>gi|11499053|ref|NP_070287.1| Hef nuclease [Archaeoglobus fulgidus DSM 4304]
 gi|2649107|gb|AAB89786.1| ATP-dependent RNA helicase, putative [Archaeoglobus fulgidus DSM
           4304]
          Length = 741

 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 140/560 (25%), Positives = 240/560 (42%), Gaps = 92/560 (16%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQ+ +   A  +NT+ V+ TG GKT IA ++I   ++ +  +G    ++FLAPT  LV
Sbjct: 17  RMYQISIAATALTKNTLVVIPTGLGKTTIAALVIA--SRLLNEDG---KVLFLAPTKPLV 71

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGV--DEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            Q    ++     +VEE     G    E   + W+K      ++V TPQ++ + L    +
Sbjct: 72  EQHARFLK--RVLKVEEIVSLSGEVPPEKRKELWEK----ARIVVSTPQVVENDLLAGRI 125

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEG 224
           SL+ V  +V DE H A GN+ Y  I KE Y ++  KP +  MTA        S   D E 
Sbjct: 126 SLEDVILVVFDEAHRAVGNYAYVFIAKE-YLRTAKKPLILAMTA--------SPGSDPE- 175

Query: 225 QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD-- 282
           +I E+   L   +  IE +TE +             D + + G     K  + W K D  
Sbjct: 176 RIMEVIQNLG--IEAIEVRTEWD------------SDVAPYVG-----KKRIEWIKVDIP 216

Query: 283 ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAK--ILYCLDELGLICA-------YEAV 333
             + +++     C K    + + L  ++ +  +K  +L   + L    A       +EA+
Sbjct: 217 EEMKEVKERLKECIKIRFKRLRELWIEVPENSSKRDLLALQEALQAEAASSQSSEIFEAL 276

Query: 334 KICLEKVLKAQEECEIYRQSSLQC-KYFLEEVLHVI----GSALP---LADKIFLDFGFD 385
            I  E ++K Q   E+     ++  K +L +++       GS      + D IF      
Sbjct: 277 SILAE-IMKLQHAVELIETQGVKAVKSYLRKLVREATSKGGSKAAKSIVGDPIFKKAVIA 335

Query: 386 YSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTV 445
            SK         KL E+L+    F K+     I+F     +A   E  V ++  L    V
Sbjct: 336 LSKCKVEHPKLEKLKEILKE--QFEKNPDSRVIVFTNYRDSA---EMLVNELSPL--FPV 388

Query: 446 AYLTGSTTSVD--ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD-LP 502
           A   G  +  +   +  K Q E ++ FR G   +L AT V EEG+ +P+   V+ ++ +P
Sbjct: 389 AKFVGQASRDNDKGMRQKEQIETIDKFRRGVYKVLVATSVGEEGLDIPSTDLVVFYEAVP 448

Query: 503 KTVSSYIQSRGRARQHNSQFILMLERG---------NLKQRNKLFDII--------RSER 545
             + +  +     R    + ++++ +G         ++K+  K++D I        R +R
Sbjct: 449 SEIRAIQRKGRTGRGREGRIVVLVTKGTRDEAYYYSSMKKERKMYDKILEIKRIIDRKQR 508

Query: 546 SVTDTALSRDPEACFLKACT 565
           S+ D  L   PE   +K   
Sbjct: 509 SIGDYVL---PEETGIKVIV 525


>gi|242053017|ref|XP_002455654.1| hypothetical protein SORBIDRAFT_03g016943 [Sorghum bicolor]
 gi|241927629|gb|EES00774.1| hypothetical protein SORBIDRAFT_03g016943 [Sorghum bicolor]
          Length = 102

 Score = 91.7 bits (226), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/102 (45%), Positives = 60/102 (58%), Gaps = 1/102 (0%)

Query: 700 TTPIRALSGRWGEKCGVI-LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYL 758
           TT + ++ G WG    V  L  YK NF C  V + YS FVLLI++ +  +    +++LYL
Sbjct: 1   TTKVLSMFGSWGTDIIVTKLQGYKLNFVCDQVGQNYSDFVLLIDANIVKEAATLDIDLYL 60

Query: 759 VSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFV 800
             K VKA+VS  G    DA QM + K FQ L FN LFGKLF+
Sbjct: 61  HDKMVKASVSPCGPFEFDAHQMEQTKLFQALLFNSLFGKLFI 102


>gi|167046039|gb|ABZ10551.1| dicer 2 [Nematostella vectensis]
          Length = 1162

 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 88/189 (46%), Gaps = 20/189 (10%)

Query: 1059 SSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118
            S+LIL ALTT    +    ERLE+ GD+ +KYA+S  L+  +P  +EG+LS  R   V N
Sbjct: 581  STLILRALTTTSANDIIDHERLEIYGDAFIKYAISELLYSDFPNVNEGRLSFLRGLRVSN 640

Query: 1119 STLHKLGTDRKLQGYIRDSAFDP-RRWVAPG--QLSLRPV-------PCECGVDTLEVPL 1168
              L  LG  R L   I    F+P   WV PG    S+R V       P     D L +  
Sbjct: 641  QQLFYLGRSRGLAPLILTKPFEPVGSWVPPGFSSSSMRNVHETLDVSPQHGVNDVLNIDD 700

Query: 1169 DGKFFTQDTKVVVGKPCDMGHRWM----------GSKTIADCAEALIGAYYVGGGLIAAL 1218
            +      + + + G  C      M            KT+AD  EALIGA  +  G  AAL
Sbjct: 701  EDSLDHSEIQDISGNECRGNVEPMLLPPHTFTVISDKTVADTIEALIGACLMSSGTNAAL 760

Query: 1219 YMMKWLGID 1227
             +M+WL +D
Sbjct: 761  RLMRWLDMD 769



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 36/178 (20%)

Query: 1233 SLVDDCITRASLRSYVPRIN--EIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLY 1290
            +L+D  +TR  L+ + PR++   I D+ S +   +++  L        ++Q     ++ +
Sbjct: 981  ALLDYLVTRHVLQRF-PRLSPGAITDLRSAVVNNYSLACL--------TIQ-----RDFH 1026

Query: 1291 KHLQHCSTLL----------LSQITE--------YVKSFPKPGETTDSGPSMKAPKALGD 1332
            KH++  S  L          LS+I E        Y K      E    G +++ PK LGD
Sbjct: 1027 KHMRSMSMALFKVVRRFVRRLSEIEEKETRPDQVYSKLLLTTVEDGRGGEAIEVPKVLGD 1086

Query: 1333 LLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFV 1388
            L E+++GA+ +D   + +  W +  P+L+PI+    + LP  P R+L+E+      F 
Sbjct: 1087 LFEALLGALYVDCGRDEELAWSVIYPLLTPIIEHYSVHLPISPTRQLVEMMPGAATFT 1144



 Score = 41.2 bits (95), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 55/106 (51%), Gaps = 2/106 (1%)

Query: 944  SKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL-VNFNDGGGSGKGSKSGMNTKKPQ 1002
            + TF +Y+ ++YG+ L    QPLL +    +  N L   +    G         + +  +
Sbjct: 342  APTFGDYYKDRYGVDLSR-DQPLLDVDHVSSRLNFLRPRYKTSKGKDLALPDEKSKRSQR 400

Query: 1003 MHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
              V + PE+     +P S+ + +  +PS++ R+++L++A +LR+++
Sbjct: 401  SRVSLVPEMCSIHPIPGSLWRDITNMPSILYRVDALLIAEELRQKL 446


>gi|448302430|ref|ZP_21492412.1| Hef nuclease [Natronorubrum tibetense GA33]
 gi|445581659|gb|ELY36011.1| Hef nuclease [Natronorubrum tibetense GA33]
          Length = 818

 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 125/515 (24%), Positives = 211/515 (40%), Gaps = 82/515 (15%)

Query: 43  NFIPR-IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
           NF+ R +YQLK+   A   +T+  L TG GKT +++++    A+ +   G K L+  LAP
Sbjct: 21  NFLERRLYQLKLAGTAANGHTLVCLPTGLGKTTVSLLVT---ARRLDEVGGKALM--LAP 75

Query: 102 TVHLVHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158
           T  LV Q  D  R      D E+  + G    D+  ++ W++      V++ TPQ++ + 
Sbjct: 76  TKPLVQQHADFYREALQVPDDEIVVFTGDVSPDDR-AETWEQAT----VVMATPQVIEND 130

Query: 159 LRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSS 218
           L  + +SL  V  +  DECH ATG++ Y  I  E YH            + P+V    +S
Sbjct: 131 LVGSRISLSDVTHLTFDECHRATGDYAYNYIA-ERYHAD---------ASQPLVTGMSAS 180

Query: 219 AMDCEGQISELESTL---DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275
               E  I E+ + L   D +V T ED                  D S+F         +
Sbjct: 181 PGGDEEAILEVCANLGIQDVEVMTEEDA-----------------DVSEFTHD-----TD 218

Query: 276 VSWSKFD---------ASLSKLQGSQLNCYKDM--------DDKHKTLRKQLSDYHAKIL 318
           V W + D          +L+++   +L   K++        D   K L +  ++    I 
Sbjct: 219 VEWERIDLPEEVIEIRDALNEVITDRLEKLKELGVAKSTQPDQSQKDLNRMRAELQQLIN 278

Query: 319 YCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ--CKYFLEEVLHVIGSALPLAD 376
               E      ++ + +  E V+K ++   +    S++  C+YF  +      S    A 
Sbjct: 279 NDQSE-----GFKGMSVHAE-VMKLRQAVTLVETQSVEAVCRYFDRQRNQARSSGASKAS 332

Query: 377 KIFLD---FGFDYSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVER 432
           +  +          KA     +  K  +   L   + G       I+F E    A+ +  
Sbjct: 333 QRMVSDPRVREAMRKAESFDQLHPKYRKTRMLLAETLGLEGGERVIVFTESRDTAEALTE 392

Query: 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPN 492
           F+    F     V    G     D +T   Q+EVL+ FR  +  +L +T V EEG+ VP 
Sbjct: 393 FLND-SFDAKRFVGQ--GDREGSDGMTQNQQQEVLDQFRAAEFEVLVSTSVAEEGLDVPE 449

Query: 493 CSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILML 526
              V+ ++   T    IQ +GR  RQ   + ++++
Sbjct: 450 VDLVLFYEPVPTAIRSIQRKGRTGRQSEGRVVVLM 484


>gi|320590134|gb|EFX02577.1| dead box helicase [Grosmannia clavigera kw1407]
          Length = 1329

 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 126/524 (24%), Positives = 209/524 (39%), Gaps = 70/524 (13%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  + +     NT+  L TG GKT IA  +I +  +  K       ++F+APT  LV
Sbjct: 190 RDYQFNIVKNGLFHNTLVALPTGLGKTFIAATVILNFYRWTKDAK----MVFVAPTKPLV 245

Query: 107 HQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            QQ +       + R  T     +   A    EW S+          +  MTPQ L + L
Sbjct: 246 SQQVEACFTIAGIPRSETTLLTGDTAPALRAAEWASKR---------LFFMTPQTLQNDL 296

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-VVRKGVSS 218
            K +     +  +VIDE H ATG++ Y K++  F  +     +V  +TA+P    +GV  
Sbjct: 297 SKGYADPKSIVLLVIDEAHRATGDYAYVKVIG-FIRRFTKSFRVLALTATPGSTVEGVQD 355

Query: 219 AMDCEGQISEL----ESTLDSQVFTIEDKTEMEVFVPSA-------------KESCRFYD 261
            ++  G +S +    E +LD + +      E  V  PS              K  C   D
Sbjct: 356 VINNLG-VSHVEIRTEESLDIRQYVHGRDVERFVLDPSVEIKFVQEHLSKALKPFCEKLD 414

Query: 262 QSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCL 321
           Q K       G+  +S + F   +   Q       + ++   K +   +      + + +
Sbjct: 415 QQKIW----YGRDPMSLTMF-GLMKARQEWMAGPARHLNQGTKYMTMAVFAVLQSVAHAI 469

Query: 322 DELGL--ICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
             L    I  +      L    +  E+   YR+  +    F E +L V        ++  
Sbjct: 470 KLLNFHGIKPFHDSMAELRSTTEKDEKGPKYRKQLVGDPDFQEMMLTV--------ERWL 521

Query: 380 LDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVP 438
            +  F+    +  G++  +L+   Q  L  G +T+   I+F E R  A ++V    +  P
Sbjct: 522 QEDSFESHPKI--GFLKERLNTHFQDNL--GSNTR--AIVFSEYRDSAEEIVRTLNRCSP 575

Query: 439 FLTHLTVAYLTGSTTS--VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496
              ++  A   G   S     +  K Q E +E F+ G  N+L AT + EEG+ +     +
Sbjct: 576 ---NIKAAIFVGQADSKRSSGMKQKQQIEAIEKFKAGAFNVLVATSIGEEGLDIGQVDLI 632

Query: 497 IRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERGNLKQRNKLFD 539
           I +D   +    +Q  GR  R+     IL+L RG  K+  K  D
Sbjct: 633 ICYDASSSPIRMLQRMGRTGRKRAGHVILLLMRG--KEEEKFTD 674


>gi|333910260|ref|YP_004483993.1| helicase [Methanotorris igneus Kol 5]
 gi|333750849|gb|AEF95928.1| helicase domain protein [Methanotorris igneus Kol 5]
          Length = 791

 Score = 91.3 bits (225), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 131/525 (24%), Positives = 225/525 (42%), Gaps = 89/525 (16%)

Query: 35  PSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK 94
           P    N+I    RIYQ  +   A ++NT+ VL TG GKT IA + I  I    K +G   
Sbjct: 6   PLIKPNTIE--ARIYQQVIVASALKKNTLCVLGTGLGKTAIAALTIAGILS--KKDG--- 58

Query: 95  LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVD--EWDSQCWQKEINKNDVLVMTP 152
            ++ +AP+  LV Q Y+ +R   + + ++     G        + W++      + + TP
Sbjct: 59  KVLIIAPSRPLVEQHYNSMRNFLNIDEDKIIVLTGKTPPNKREELWKE----GKIFIATP 114

Query: 153 QILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVV 212
           QI+ + L    L++D    ++ DE HH TGNH YT +  +F      K  V G+TASP  
Sbjct: 115 QIVENDLIAGRLNVDDFVLLIADEAHHTTGNHSYTFVANKF----KGKVHVLGLTASP-- 168

Query: 213 RKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVF----------VPSAKESCRFYDQ 262
                S MD   ++ E       ++ T ED  +++ +          VP  KE   F + 
Sbjct: 169 ----GSDMDRILEVCENLGIEHVEIRT-EDDEDVKPYIAKVRIIPKRVPLPKE---FEES 220

Query: 263 SKFCGSDLKGKLEV--------SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYH 314
            K     LK +L+V        S +     L +LQ        D D+K++ LR  ++   
Sbjct: 221 LKLIKDALKERLKVLKESGVINSINLTKTELIELQKEIFAL--DGDEKYELLR--IASEA 276

Query: 315 AKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPL 374
            K+ + L+    +   +   + L  +    E     R  S +     E ++ V+ +   L
Sbjct: 277 LKLFHALE----VLETQGRGVFLNYI----ERLSNQRTKSAKSIVNDERIIKVVNNLRQL 328

Query: 375 ADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVV--- 430
                     ++ K         KL E+++  L   +  ++  I+F + R    K+V   
Sbjct: 329 --------DIEHPKF-------DKLVEIVEEILKKNRDEKI--IVFAQYRDTVDKIVRLL 371

Query: 431 -ERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMH 489
            ER +K + F+          S      ++ K Q + LE F+    N+L +T V EEG+ 
Sbjct: 372 NERGIKAIRFVGQ--------SNREGKGMSQKEQIKALEEFKKNG-NVLVSTSVSEEGID 422

Query: 490 VPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERGNLKQ 533
           +   +YVI ++   +   +IQ RGR AR      I+++ +G + +
Sbjct: 423 ISAVNYVIFYEPVPSEIRFIQRRGRAARGEGGIVIILIAKGTVDE 467


>gi|154283385|ref|XP_001542488.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410668|gb|EDN06056.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1359

 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 151/418 (36%), Gaps = 123/418 (29%)

Query: 1031 VMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT----------------TLGCCES 1074
            ++ R+ES +++ +      C      I + L LEALT                  G  ++
Sbjct: 879  IISRIESYLISLE-----ACDKLQLSIETHLALEALTKDSDNTEEHRKEQIHFQRGMGKN 933

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
            +  ERLE LGD  LK A S  LF   P   E     +R   +CN  L       KL  ++
Sbjct: 934  Y--ERLEFLGDCFLKMATSISLFAMNPDNDEFDFHVKRMCLICNQNLFNTAVRLKLYEFV 991

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP---CDMGHRW 1191
            R   F  R W   G                             K++ GK         + 
Sbjct: 992  RTQGFSRRNWYPEG----------------------------IKLLQGKAQPESAQNKQA 1023

Query: 1192 MGSKTIADCAEALIGAYYVGGGLIAAL-YMMKWLGIDADLEVSLVDDC---ITRASLRSY 1247
            +G KTIAD  EALIGA  + GG        +K + +  D +   V D    I   SL SY
Sbjct: 1024 LGDKTIADICEALIGASLLSGGKACRFDTAVKAVTVFVDSDNHRVSDWNSYIDLYSLPSY 1083

Query: 1248 ------VPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY----CYQN--------- 1288
                    +++  K I +++GY FT   LL+ A THAS    +    CYQ          
Sbjct: 1084 QIAQADAGQLDLAKQIGNRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLL 1143

Query: 1289 -----------------------------------------LYKHLQHCSTLLLSQITEY 1307
                                                     L+KHL + S  L  QIT Y
Sbjct: 1144 DMVCVEYLYHHYPDRDPQWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRY 1203

Query: 1308 VKSFP-KPGETTDSGPSMKA----PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPIL 1360
             +       E+ DS  +       PK L D+LE+ +GA+ +D+  + + V   F+  L
Sbjct: 1204 AEEIEVAVAESADSPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYL 1261



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 38/226 (16%)

Query: 112 VIRVHTDFEVEEYYGAKGVD---EWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI 168
           VI    ++++E +  AK  +     D++ W+K  +KN ++V T ++L   L ++F+ ++ 
Sbjct: 89  VIHDPREYQLELFEKAKAANIIAVLDTETWEKHFSKNMIIVCTAEVLCQCLLRSFIRMEQ 148

Query: 169 VCFIVIDECHHATGNHPYTKIMKEFYHK---SDNKPKVFGMTASPVVRKGVSSAMDCEGQ 225
           +  ++ DE H A   HPY +I+K+FY +   +  +PK+FGMTASP     V + +D    
Sbjct: 149 INLLIFDEAHRAKKEHPYARIVKDFYLRRPEAQKRPKIFGMTASP-----VDAKVDVAKA 203

Query: 226 ISELESTLDSQVFT----------IEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275
              LE+ LDSQ+ T          I   TE +++V    E   FY       S + GK  
Sbjct: 204 AKNLETLLDSQIATASNLDALRQAIARPTE-QIWVIRELEKIFFY---ALEASSMLGKWC 259

Query: 276 VSW-----------SKFDASLSK--LQGSQLNCYKDMDDKHKTLRK 308
             W            K +  +SK  +Q S  +  K +D+  K LR+
Sbjct: 260 SDWLWTFALEATELPKLEGRVSKNYMQSSSRDHSKGLDEAIKLLRE 305



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 120/279 (43%), Gaps = 31/279 (11%)

Query: 393 GYISTKLHELL-QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG- 450
            ++S+K+  LL +L L F + T   CI+FV++   A+++     ++    H+    L G 
Sbjct: 323 AHLSSKVRLLLHELSLYFERHTDTKCIVFVQQRHTARLLAELFSRIG-TRHMQTGILIGV 381

Query: 451 --STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
                     + + Q   L  FR G++N L    V  E  H      V R +L    +S 
Sbjct: 382 QHDGIGGANFSFRQQFLTLLKFRKGELNCL----VRPELDHDSYAHMVERDNL--IHASC 435

Query: 509 IQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVK 568
           IQ   RA     +F   L             IIR   S  D  ++ D E           
Sbjct: 436 IQEAQRAEHIMRRFCEALPEDR---------IIRG--SSDDLGMNLDKERYH-------- 476

Query: 569 TKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNA 628
            KS+ V STGA++T  SS+ ++  Y   L  +K  +P+  +  +  + A+ CE  LP  +
Sbjct: 477 -KSFTVHSTGATLTYPSSLVVLAHYASSLQYEKETSPQVNYFIERIDGAFVCEAILPEKS 535

Query: 629 PFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 667
           PF+ + G  S  K  ++Q    E C  L + G L+DH +
Sbjct: 536 PFRGLTGKPSARKLHARQSAAFETCLMLRKNGILDDHFV 574


>gi|62751389|ref|NP_001015545.1| probable ATP-dependent RNA helicase DHX58 [Bos taurus]
 gi|59858269|gb|AAX08969.1| hypothetical protein FLJ11354 [Bos taurus]
 gi|296476327|tpg|DAA18442.1| TPA: RNA helicase LGP2 [Bos taurus]
          Length = 680

 Score = 90.9 bits (224), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 124/520 (23%), Positives = 224/520 (43%), Gaps = 55/520 (10%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TG+GKT  A  + +   + +  +G K  ++ L   VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVARRHLETV--DGAK--VVVLVNRVHL 59

Query: 106 VHQQYDVIR--VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +     +   + +    G  G        +     ++D+L+ T ++L  AL    
Sbjct: 60  VTQHCEEFSRMLERRWTITTLSGDMG----PRAGFGHVARRHDLLICTAELLQKALASPE 115

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVVRKG 215
            +  + L+    +V+DECHH   +  Y  I+ ++      ++   P+V G+TASP    G
Sbjct: 116 EEEHVELNAFSLLVVDECHHTHKDTVYNIILSQYLELKLQRTRPLPQVLGLTASPGT-GG 174

Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275
           VS+       + +L + LD+    +  K         + + C+ YD    C    +    
Sbjct: 175 VSTLEGAIDHVLQLCANLDTWCI-MSPKDHSPQLQEHSHQPCKQYD---LCHRRTQ---- 226

Query: 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHA-KILYCLDELGL----ICAY 330
                F   L KL   Q++ + +M    +    Q  +    ++     E GL    + A 
Sbjct: 227 ---DPFGDMLKKLM-DQIHDHLEMPKLRRDFGTQTYEQQVVELSQDAAEAGLLEQRVYAL 282

Query: 331 EAVK----ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
              +    + +   ++A +     R    + +    ++LH     L L D    D   + 
Sbjct: 283 HLRRYNDALLIHDTVRAVDALNTLRDFYNRERTTKTQILHAERWLLALFD----DHKNEL 338

Query: 387 SKAVDLGYISTKLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT 444
           ++    G  + KL E+L+  L   F        IIF     +A  +  ++++ P L  + 
Sbjct: 339 ARLATSGPENPKL-EVLEAILQRQFRSPDSPRGIIFTRTRQSAHSLLLWLQQQPGLQTVD 397

Query: 445 V--AYLTGS-----TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
           +    LTG+      T +  +T + Q+EV++ FR G +NLL AT V EEG+ +P C+ V+
Sbjct: 398 IRPQVLTGAGNNSQKTQMIQMTQRDQQEVIQKFRTGTLNLLVATSVAEEGLDIPQCNVVV 457

Query: 498 RFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
           R+ L     S +Q+RGRAR   S +  +  +G+ + + +L
Sbjct: 458 RYGLLTNEISMVQARGRARASQSVYSFVAAQGSRELQREL 497


>gi|254692316|emb|CAY86112.1| retinoic acid-inducible gene-I [Cyprinidae sp. EPC]
          Length = 940

 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 21/226 (9%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ ++ + A+ +NTI    TG GKT++AV + ++    +K    +  I+FLA  V + 
Sbjct: 257 REYQKELTDAAEGQNTIICAPTGCGKTIVAVAICEN---HLKKRPGRAKIVFLATKVDVY 313

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-S 165
            QQY + + H  F  +      G+    +   +  I  +D++V+T QIL++AL+   + S
Sbjct: 314 EQQYKLFKEHFSF-TDPNIKVTGMCGDMALSVRLLIETHDIVVLTAQILVNALQSGEVPS 372

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYH-----KSDNKPKVFGMTASPVVRKGVSSAM 220
           LD++  I++DECH+ TG HPY  IM  +        + + P++ G+TAS     G+ +  
Sbjct: 373 LDMLSLILLDECHNTTGKHPYNNIMTRYLDTKLSSSTHSLPQIVGLTASV----GIGTFK 428

Query: 221 D---CEGQISELESTLDSQVFTIEDK--TEMEVFVPSAKESCRFYD 261
           D    E  I +L + LD++V     K   E+  FV + ++   F+D
Sbjct: 429 DRTEAENNILQLCANLDTRVIATVTKHLDELRTFVHTPEKE--FFD 472



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 6/139 (4%)

Query: 393 GYISTKLHEL-LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG- 450
           G  + KL EL   L   +  + Q   ++FV     A  +++++     L  L    L G 
Sbjct: 613 GQQNPKLEELRFILEEEYHNNDQTRTVLFVRTRALADAMKKWIDDTDSLKFLMPGVLIGK 672

Query: 451 ---STTSVDALTPKVQKEVLESFRGG-KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
              S  +   +TP  +K VL+SF+   +  +L AT V +EG+ +P C+ V+ ++    V 
Sbjct: 673 GRKSNFNGSVMTPTNKKGVLDSFKSSDQSKILIATSVADEGIDIPQCNLVLMYEYVGNVV 732

Query: 507 SYIQSRGRARQHNSQFILM 525
             +Q RGR R   S+  L+
Sbjct: 733 KMVQVRGRGRAQGSRCFLI 751


>gi|379055865|emb|CCD32436.1| dicer-1, partial [Sitobion avenae]
          Length = 319

 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 112/259 (43%), Gaps = 46/259 (17%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S++L+ALT     +  ++ERLE +GDS LKYA++ +L+ T+   HEG+LS  RS  V N 
Sbjct: 65   SVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQVSNL 124

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP---------GQLSLRPVPCE----CGVDTLE 1165
             L++LG  +     +  + F+P   W+ P           L    +P        + T +
Sbjct: 125  NLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEKALINASIPTTLWNMITLPTFK 184

Query: 1166 VPLDGK-----------FFTQD---TKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVG 1211
             P D +           F  QD   T + V       H  +  K+IADC EALIGAY + 
Sbjct: 185  DPTDKEIEEAIQQFKVGFSNQDIENTPLFVPYNLVTQHS-IPDKSIADCVEALIGAYLIS 243

Query: 1212 GGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD--------------I 1257
             G   AL  M WLGI     +  +DD           P +  + D               
Sbjct: 244  CGARGALLFMSWLGIRV---LPTLDDSKLGYLKPPSSPLLRNVDDPEGELTKLMDGFESF 300

Query: 1258 ESKIGYEFTVKFLLQEAIT 1276
            E  +GY F  +  L +A+T
Sbjct: 301  EQHLGYRFQDRSYLLQAMT 319


>gi|74215044|dbj|BAE33508.1| unnamed protein product [Mus musculus]
          Length = 733

 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 29/247 (11%)

Query: 16  HSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTM 74
            +P PP   SS + H+              PR YQL++   AK+ +NTI    TG GKT 
Sbjct: 225 QNPGPPSEASSNNLHSP-----------LKPRNYQLELALPAKKGKNTIICAPTGCGKTF 273

Query: 75  IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD---FEVEEYYGAKGVD 131
           +++++ +   +     G K  ++F A  + +  QQ  V   + +   + +    GA    
Sbjct: 274 VSLLICEHHLKKFPC-GQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATS-- 330

Query: 132 EWDSQCWQKEINKNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGNHPYTKIM 190
             DS   Q  I  ND++++TPQIL++ L   A  SL +   ++ DECH+ + NHPY +IM
Sbjct: 331 --DSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIM 388

Query: 191 KEFY-HK----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIEDK- 243
             +  HK     D  P+V G+TAS  V     +A +    I +L + LD+ V  T+ D  
Sbjct: 389 FRYLDHKLGESRDPLPQVVGLTASVGV-GDAKTAEEAMQHICKLCAALDASVIATVRDNV 447

Query: 244 TEMEVFV 250
            E+E  V
Sbjct: 448 AELEQVV 454



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS--TTSVDALTPKVQKEVLESFRG-GK 474
           I+FV+       +++++++ P L+ L    LTG   T     +T   QK VLE+FR  G 
Sbjct: 632 ILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGD 691

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
            N+L AT V +EG+ +  C+ VI ++   TV   IQ+RG +
Sbjct: 692 NNILIATSVADEGIDIAECNLVILYEYVGTVIKMIQTRGES 732


>gi|307176233|gb|EFN65868.1| Fanconi anemia group M protein [Camponotus floridanus]
          Length = 1323

 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 128/513 (24%), Positives = 226/513 (44%), Gaps = 62/513 (12%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           N+  R YQ  + + A  +NT+  L TG GKT IA +++ +  +      F K I+FLAPT
Sbjct: 32  NYPVRQYQYNIVKAALYQNTLVCLPTGLGKTFIAAVVMYNFWRWY---PFGK-IVFLAPT 87

Query: 103 VHLVHQQ----YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158
             LV QQ    Y+V+ + +  ++ E  GA    + +   W K+     ++  TPQ+  + 
Sbjct: 88  KPLVAQQIDACYEVMGIPS-VDMIELTGAVNKKKREI-AWHKK----RIIFATPQVFHND 141

Query: 159 LRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSS 218
           L K  +   +V  +V+DE H A G H Y + +K  Y + +   +V  ++A+P  +     
Sbjct: 142 LEKKIVPSHLVKCVVVDEAHKALGKHSYCECIKILYTQ-NQYFRVLALSATPGNKIDNVH 200

Query: 219 AMDCEGQISEL----ESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
            +     IS L    E+++D   +  + K ++ + VP + E   + D+      D   K 
Sbjct: 201 EIIQNLHISHLELRDETSIDIMPYVNKRKVDI-ILVPLSHELAEYKDKY-IIIMDRHVKF 258

Query: 275 EVSWSKFDASLSKL-QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
            + ++   A  + + +G   +  K+   K        S  + +I+  L+   L+  Y A 
Sbjct: 259 LMQYNILRAETANISKGRIFHLLKEFQAK-----TDKSGNYGQIMKTLN--ILLTMYHAY 311

Query: 334 KICLEKVLKAQEECEIYRQSS--------LQCKYFLEEVLHVIG---SALPLAD--KIFL 380
           ++ +   L+A   C+ Y+  S         Q +  L ++   +G     LP  D  +I  
Sbjct: 312 ELMVRHGLRAF--CKFYQNHSDKFWMNNENQLQSLLNDIEVYLGPFPDILPNGDVPEIPA 369

Query: 381 DFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQ-VLCIIFVE-RIIAAKVVERFVKKVP 438
           D  F ++K         KL ELL+    +    Q    I+F+E R I  +V    +K  P
Sbjct: 370 DLVFGHNKF-------HKLKELLEHHFKYNNDRQDTRAIVFIEYRDIVNEVYILLLKSKP 422

Query: 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
               +      G  +       K Q + LE FR   VN+L +T + EEG+ V     +I 
Sbjct: 423 L---IRPQMFVGQASQ----KQKQQIKALEDFRSNHVNVLISTSIGEEGLDVGEVDLIIC 475

Query: 499 FDLPK-TVSSYIQSRGR-ARQHNSQFILMLERG 529
           FD+ + +    +Q  GR  R+ +   I+++  G
Sbjct: 476 FDVSQHSPIRLVQRMGRTGRKRDGHIIVLVTDG 508


>gi|395330621|gb|EJF63004.1| hypothetical protein DICSQDRAFT_83832 [Dichomitus squalens LYAD-421
            SS1]
          Length = 1330

 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 16/229 (6%)

Query: 1006 HMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFH--IPSSLIL 1063
            ++ PE+  +  +P S  ++L+L+PS+M ++ES +L  +L      ++R FH  +    +L
Sbjct: 760  YLIPEMCYKFTIPASTFRTLWLMPSIMNKIESYLLVKEL------NARLFHNAVIEQQLL 813

Query: 1064 EALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHK 1123
             AL+T      F+ ERLE LGDS LK   S   + T P  H G L   R   + N  L +
Sbjct: 814  IALSTPAAWTEFNYERLEFLGDSFLKVVASNFCYATMPSVHVGDLHQARQSIISNKVLQE 873

Query: 1124 LGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVD--TLEVPLDG---KFFTQDTK 1178
              T   +  Y++   F  + W  P  LS   V  E   +    +V + G   +   +  +
Sbjct: 874  GATRVGVPSYVQHKRFVAKLWQPP--LSTANVAEELKTEGGNGDVEMTGEAPEKKDKGKR 931

Query: 1179 VVVGKPCDMGHR-WMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1226
                +  D  +  WMG K IAD  EA++ A ++ GG   AL   + L +
Sbjct: 932  SKKQRQLDEQNTLWMGDKIIADVVEAILAASFLSGGHEVALEAARRLQV 980



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 105/513 (20%), Positives = 210/513 (40%), Gaps = 86/513 (16%)

Query: 184 HPYTKIMKEFYHKSDNKPKVFGM-TASPVVRKGVSSAMDCEGQISELESTLDSQVFTIED 242
           HP  ++M +F+ K+ + P+VF + T SP   + VS  +D    ++ LE+ L +Q F +  
Sbjct: 17  HPVLRMMSDFHAKTADPPRVFALFTCSP--ERWVS--LD----LAWLEAPLRAQAFFLAT 68

Query: 243 KTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDK 302
           KT                       +   G +E+         S+++    +  +  D +
Sbjct: 69  KTV----------------------NSWSGPVELVMEYEATPSSQMEPYMSSIVRRADPE 106

Query: 303 HKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLE 362
              +R Q   Y      CL +LG        +  L++++       +   + L       
Sbjct: 107 GLLVRPQ--HYRRARRICL-QLGSFATNAWWRDTLDELVA----LPVSNDTKLSVARDSL 159

Query: 363 EVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE 422
           E++   G    +AD++ +  G   S   ++ +  +KL ++LQ + ++G   Q   I+FV 
Sbjct: 160 ELIKSHG----MADRLQVAPG---SSNPNVTFKVSKLLQVLQPYAAYGD--QFRGIVFVR 210

Query: 423 RIIAAKVVERFVK----KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLL 478
             + A V+   +     +VPF+    +A      +  ++L        L +F   K NL+
Sbjct: 211 DKVVASVLPGLLNAAETQVPFIR--AIAPSRKERSGKNSL-----HAALSAFSSSKYNLI 263

Query: 479 FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF 538
             T  +E+ + +P  S ++ FD+     SY  S    R  +S  + ++E+GN +QR  L 
Sbjct: 264 VLTKSMED-VELPPASIIVNFDVFDDQLSYAYSHLHTRGRHSHLVYLVEKGNNEQRRILT 322

Query: 539 --------------DIIRSERSVTDTAL--SRDPEACFLKACTYVKTKSYIVES-TGASV 581
                         D +R + +    ++    DP     ++ +  + + YIV++ T A +
Sbjct: 323 RVQSVDNEMKEWVGDFVRGDCNAPPKSMHVGLDP----YQSDSDNEGEDYIVDAVTSARI 378

Query: 582 TTDSSVNLIHRYC-EMLPSDKYYTPKPIFKYKSAEEAYECE-----LTLPSNAPFQTIVG 635
               ++   +R+  +M         K  F  ++ E   +       ++ P +     I G
Sbjct: 379 DKSQAIPTFYRFAIQMHAVSGAEDEKVAFNMETGERGDDAAVLRYIISFPKSTALAAISG 438

Query: 636 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 668
           P    K  +K+  C +AC++L +VG ++    P
Sbjct: 439 PYCSTKWEAKREACHQACKELVRVGIMDHRHFP 471


>gi|116283738|gb|AAH27369.1| Ddx58 protein [Mus musculus]
          Length = 763

 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 29/247 (11%)

Query: 16  HSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTM 74
            +P PP   SS + H+              PR YQL++   AK+ +NTI    TG GKT 
Sbjct: 225 QNPGPPSEASSNNLHSP-----------LKPRNYQLELALPAKKGKNTIICAPTGCGKTF 273

Query: 75  IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD---FEVEEYYGAKGVD 131
           +++++ +   +     G K  ++F A  + +  QQ  V   + +   + +    GA    
Sbjct: 274 VSLLICEHHLKKFPC-GQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATS-- 330

Query: 132 EWDSQCWQKEINKNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGNHPYTKIM 190
             DS   Q  I  ND++++TPQIL++ L   A  SL +   ++ DECH+ + NHPY +IM
Sbjct: 331 --DSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIM 388

Query: 191 KEFY-HK----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIEDK- 243
             +  HK     D  P+V G+TAS  V     +A +    I +L + LD+ V  T+ D  
Sbjct: 389 FRYLDHKLGESRDPLPQVVGLTASVGV-GDAKTAEEAMQHICKLCAALDASVIATVRDNV 447

Query: 244 TEMEVFV 250
            E+E  V
Sbjct: 448 AELEQVV 454



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS--TTSVDALTPKVQKEVLESFRG-GK 474
           I+FV+       +++++++ P L+ L    LTG   T     +T   QK VLE+FR  G 
Sbjct: 632 ILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGD 691

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR 534
            N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R  +S+  L+    ++ ++
Sbjct: 692 NNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLLTSSADVIEK 751

Query: 535 NK 536
            K
Sbjct: 752 EK 753


>gi|14520497|ref|NP_125972.1| Hef nuclease [Pyrococcus abyssi GE5]
 gi|5457712|emb|CAB49203.1| Putative ATP-dependent ERCC4-like helicase [Pyrococcus abyssi GE5]
          Length = 752

 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 8/165 (4%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR+YQ  ++   K RN + VL TG GKT+IA M+I D     + N +   ++ LAPT  L
Sbjct: 13  PRLYQELIYAKCKERNCLIVLPTGLGKTIIA-MMIADY----RLNKYGGKVLMLAPTKPL 67

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V Q  +  R   +   E+     G  E       K  N+  V++ TPQ + + L    ++
Sbjct: 68  VLQHAETFRKFFNLPPEKIVALTG--EVSPSERVKAWNRAKVIIATPQTVENDLLTGKIN 125

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
           L+ V  ++ DE H A GN+ Y  I +E+ +++ N P V G+TASP
Sbjct: 126 LEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKN-PHVIGLTASP 169



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 13/137 (9%)

Query: 399 LHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVD- 456
           L EL++  LS  +++++  I+F   R  A KVVE   K+      +      G  T  + 
Sbjct: 351 LKELVKEQLSKKENSKI--IVFTNYRETARKVVEELTKE-----GIKAKRFVGQATKEND 403

Query: 457 -ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD-LPKTVSSYIQSRGR 514
             ++ + QK +L+SF  G+ N+L AT V EEG+ VP    V+ ++ +P  + S +Q RGR
Sbjct: 404 RGMSQREQKLILDSFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRS-VQRRGR 462

Query: 515 -ARQHNSQFILMLERGN 530
             RQ   + ++++ +G 
Sbjct: 463 TGRQKPGRVVILIAQGT 479


>gi|77415358|gb|AAI06096.1| Ddx58 protein, partial [Mus musculus]
          Length = 763

 Score = 90.1 bits (222), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 29/247 (11%)

Query: 16  HSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTM 74
            +P PP   SS + H+              PR YQL++   AK+ +NTI    TG GKT 
Sbjct: 225 QNPGPPSEASSNNLHSP-----------LKPRNYQLELALPAKKGKNTIICAPTGCGKTF 273

Query: 75  IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD---FEVEEYYGAKGVD 131
           +++++ +   +     G K  ++F A  + +  QQ  V   + +   + +    GA    
Sbjct: 274 VSLLICEHHLKKFPC-GQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATS-- 330

Query: 132 EWDSQCWQKEINKNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGNHPYTKIM 190
             DS   Q  I  ND++++TPQIL++ L   A  SL +   ++ DECH+ + NHPY +IM
Sbjct: 331 --DSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIM 388

Query: 191 KEFY-HK----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIEDK- 243
             +  HK     D  P+V G+TAS  V     +A +    I +L + LD+ V  T+ D  
Sbjct: 389 FRYLDHKLGESRDPLPQVVGLTASVGV-GDAKTAEEAMQHICKLCAALDASVIATVRDNV 447

Query: 244 TEMEVFV 250
            E+E  V
Sbjct: 448 AELEQVV 454



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS--TTSVDALTPKVQKEVLESFRG-GK 474
           I+FV+       +++++++ P L+ L    LTG   T     +T   QK VLE+FR  G 
Sbjct: 632 ILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGD 691

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR 534
            N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R  +S+  L+    ++ ++
Sbjct: 692 NNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLLTSSADVIEK 751

Query: 535 NK 536
            K
Sbjct: 752 EK 753


>gi|380741022|tpe|CCE69656.1| TPA: hef nuclease [Pyrococcus abyssi GE5]
          Length = 749

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 8/165 (4%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR+YQ  ++   K RN + VL TG GKT+IA M+I D     + N +   ++ LAPT  L
Sbjct: 10  PRLYQELIYAKCKERNCLIVLPTGLGKTIIA-MMIADY----RLNKYGGKVLMLAPTKPL 64

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V Q  +  R   +   E+     G  E       K  N+  V++ TPQ + + L    ++
Sbjct: 65  VLQHAETFRKFFNLPPEKIVALTG--EVSPSERVKAWNRAKVIIATPQTVENDLLTGKIN 122

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
           L+ V  ++ DE H A GN+ Y  I +E+ +++ N P V G+TASP
Sbjct: 123 LEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKN-PHVIGLTASP 166



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 13/137 (9%)

Query: 399 LHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVD- 456
           L EL++  LS  +++++  I+F   R  A KVVE   K+      +      G  T  + 
Sbjct: 348 LKELVKEQLSKKENSKI--IVFTNYRETARKVVEELTKE-----GIKAKRFVGQATKEND 400

Query: 457 -ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD-LPKTVSSYIQSRGR 514
             ++ + QK +L+SF  G+ N+L AT V EEG+ VP    V+ ++ +P  + S +Q RGR
Sbjct: 401 RGMSQREQKLILDSFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRS-VQRRGR 459

Query: 515 -ARQHNSQFILMLERGN 530
             RQ   + ++++ +G 
Sbjct: 460 TGRQKPGRVVILIAQGT 476


>gi|66813222|ref|XP_640790.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
 gi|60468778|gb|EAL66778.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
          Length = 2285

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 8/194 (4%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQ   F     RNTI VL TG GKT+++++    + +  +     K+ +FL   + L
Sbjct: 20  PRQYQEDAFNQCISRNTILVLPTGTGKTLVSILTFLKMFEINEKKNNDKVALFLVNNILL 79

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
             QQ + I+  TD  V    G       D   +Q +    D++V TPQIL++ + K  + 
Sbjct: 80  GKQQTETIKNLTDKRVMVLSG-------DDLSFQTKKKNYDIVVATPQILMNLINKNKIR 132

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMDCEG 224
           +D   FI+ DE H+ATG   Y KIM    +     +P++ G+TAS +      +      
Sbjct: 133 IDNFHFIIFDEVHNATGLDNYCKIMSLVKNLDPPFRPRILGLTASVLKNASNYTTERATN 192

Query: 225 QISELESTLDSQVF 238
           +I +LE  + S+++
Sbjct: 193 EIKKLEDIMLSKIY 206



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 9/145 (6%)

Query: 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473
           ++ CI+FVE     K +   +     ++ L    + G     + +    Q+++++ F+ G
Sbjct: 394 KINCIVFVETRDTGKKLLNLLISEKEISKLNPKLIYGHNGR-NGMKHSEQQQIIQQFKEG 452

Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQ 533
              +L +T+V+EEG+ +  C+ VI FD   ++ S IQ RGR R  +S F L+LE+    Q
Sbjct: 453 VCQVLVSTNVLEEGIDIKECNSVICFDNLYSLKSLIQRRGRDRTCSS-FTLILEQD---Q 508

Query: 534 RNKLFDIIRSE----RSVTDTALSR 554
           R +L D+I+SE    RS+ D    R
Sbjct: 509 RLRLEDLIKSEIIINRSLIDIMTDR 533


>gi|289192001|ref|YP_003457942.1| helicase domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938451|gb|ADC69206.1| helicase domain protein [Methanocaldococcus sp. FS406-22]
          Length = 783

 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 223/493 (45%), Gaps = 54/493 (10%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQ  +   A ++ T+ VL TG GKT IA+++I  I    K +G    I+ LAP+  LV
Sbjct: 16  RLYQQIIAANALKKKTLCVLSTGLGKTAIAILVIAGILT--KKDG---KILILAPSRPLV 70

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            Q Y+ ++   + + ++     G  +   +   +   K  + + TPQ++ + +    +++
Sbjct: 71  EQHYNRLKEVLNIDEDKIIALTG--KIQPKKRVELYKKGKIFIATPQVIENDIIAGRINI 128

Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQI 226
           D    ++ DE HH TG+H Y  + K+F     +K  V G+TASP       S +D   +I
Sbjct: 129 DEFVLLIADEAHHTTGDHAYAFVAKKF----KDKCHVLGLTASP------GSDIDRVMEI 178

Query: 227 SELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLS 286
            E       +V T ED  +++ ++   K +            DL  + + +    + +L 
Sbjct: 179 CENLGIEHVEVRT-EDDEDVKPYIAKVKLTP--------IRIDLPDEFKRALKLINEALK 229

Query: 287 KLQGSQLNCYKD---MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE--KVL 341
                +L   KD   +D    T + +L + + K L+  DE      YE +++C E  K++
Sbjct: 230 ----ERLKILKDAGVIDSISNTTKTELIELNNK-LFSYDEE---VKYELIRVCSEALKLM 281

Query: 342 KAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHE 401
            A+E  E  +  S+   Y  +  +    SA  + +           +AV+L   S   H 
Sbjct: 282 HAKELLE-SQGKSVFLNYINKLSMQRTKSAKSIVN------DEKVREAVNLLMKSNVEHP 334

Query: 402 LLQLFLSFGKSTQVLCIIFVERIIA-AKVVERFVKKVPFLTH---LTVAYLTGSTTSVDA 457
            L   +   K   +L     ERII  A+  +   K V  LT      + ++  +      
Sbjct: 335 KLDKVVDIVKG--ILQKNEDERIIIFAQYRDTVEKIVNLLTQNGIKAIRFIGQANKEGKG 392

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-R 516
           ++ K Q E +E F+  + ++L +T V EEG+ +P  +Y+I ++   +   +IQ RGRA R
Sbjct: 393 MSQKEQIEAIEKFK-KEGSVLVSTSVSEEGIDIPTVNYIIFYEPVPSEIRFIQRRGRAMR 451

Query: 517 QHNSQFILMLERG 529
               +  +++ +G
Sbjct: 452 GEGGKVYVLIAKG 464


>gi|45385112|gb|AAS59532.1| DEAD/H box polypeptide RIG-I [Mus musculus]
          Length = 926

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 29/247 (11%)

Query: 16  HSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTM 74
            +P PP   SS + H+              PR YQL++   AK+ +NTI    TG GKT 
Sbjct: 225 QNPGPPSEASSNNLHS-----------PLKPRNYQLELALPAKKGKNTIICAPTGCGKTF 273

Query: 75  IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD---FEVEEYYGAKGVD 131
           +++++ +   +     G K  ++F A  + +  QQ  V   + +   + +    GA    
Sbjct: 274 VSLLICEHRLKKFPC-GQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATS-- 330

Query: 132 EWDSQCWQKEINKNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGNHPYTKIM 190
             DS   Q  I  ND++++TPQIL++ L   A  SL +   ++ DECH+ + NHPY +IM
Sbjct: 331 --DSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIM 388

Query: 191 KEFY-HK----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIEDK- 243
             +  HK     D  P+V G+TAS  V     +A +    I +L + LD+ V  T+ D  
Sbjct: 389 FRYLDHKLGESRDPLPQVVGLTASVGV-GDAKTAEEAMQHICKLCAALDASVIATVRDNV 447

Query: 244 TEMEVFV 250
            E+E  V
Sbjct: 448 AELEQVV 454



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS--TTSVDALTPKVQKEVLESFRG-GK 474
           I+FV+       +++++++ P L+ L    LTG   T     +T   QK VLE+FR  G 
Sbjct: 632 ILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGD 691

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR 534
            N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R  +S+  L+    ++ ++
Sbjct: 692 NNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLLTSSADVIEK 751

Query: 535 NK 536
            K
Sbjct: 752 EK 753


>gi|242221926|ref|XP_002476701.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724029|gb|EED78105.1| predicted protein [Postia placenta Mad-698-R]
          Length = 232

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 106/218 (48%), Gaps = 19/218 (8%)

Query: 1065 ALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL 1124
            ALT     E  + +RLE LGD+VLKY  S  LF  YP  HEG L+ R+  AV N  L K 
Sbjct: 1    ALTAPVAQELINYQRLETLGDTVLKYITSIKLFADYPLWHEGYLARRKDHAVSNVQLAKC 60

Query: 1125 GTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP 1184
               + L  +I    F PR+W  P  +S    P + G  T     +G    +  K    + 
Sbjct: 61   AISKGLYQWIIRDRFVPRKW-RPHYMS---GPEDIGSRTEGA--NGNNDDKKKKTKTQE- 113

Query: 1185 CDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSL---VDDCITR 1241
                   + +K +AD  E+LIGA Y  GG   A+  +   G+      ++   +D+ +T+
Sbjct: 114  -------LSTKVLADVVESLIGAAYEHGGFDLAVNCISIFGLGLPSWQTIPQHIDNIMTK 166

Query: 1242 ASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
                 Y P   ++  +E+ +GYEFT K LL +A+THAS
Sbjct: 167  IEELDYPP--PQLSLVETMLGYEFTHKALLVQALTHAS 202


>gi|324501737|gb|ADY40770.1| ATP-dependent RNA helicase DDX58 [Ascaris suum]
          Length = 1050

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 95/185 (51%), Gaps = 13/185 (7%)

Query: 47  RIYQLKVFEVAKRR-NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ ++ E A R  NTI    TG+GKT++A  +I++  Q  K  G    +  L PTV L
Sbjct: 307 RPYQEELVEAACRGVNTIICAPTGSGKTIVATYIIRNHLQEKKDAGETARVAMLVPTVPL 366

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
           V QQ   +  +    F VE   G++ VDE     +   +  + V + TPQI ++ LR   
Sbjct: 367 VEQQSLALNRYLRKVFWVEGLSGSERVDEDGRAPF---VLASHVTIFTPQIFINLLRSIR 423

Query: 164 ----LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVV---RKGV 216
               L  +    +V DECHH  G+HPY  +M+  +  +  KP+V G+TAS  +   R  V
Sbjct: 424 KGDRLYFNDFTMLVFDECHHCDGDHPYHVLMRMLHDYNGKKPQVVGLTASLPLGSGRANV 483

Query: 217 SSAMD 221
            +A+D
Sbjct: 484 EAALD 488



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 18/146 (12%)

Query: 399 LHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVE-----RFV----KKVPFLTHLTVAYL 448
           LH +L     + K      IIFV  R++A K+ E     R +    + + F+T    +  
Sbjct: 682 LHNIL--LKQYEKEPSSRTIIFVTTRMLAEKLSEHLNECRIIDGGPRAIGFVTSSNQSSS 739

Query: 449 TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
               T+ +      Q+ ++E F  G   +L AT V EEG+ +  C+ +I+++   +  S 
Sbjct: 740 FSGQTAAE------QRLMIEDFNTGLRKVLVATSVAEEGLDISACNLIIKYNNTGSERSL 793

Query: 509 IQSRGRARQHNSQFILMLERGNLKQR 534
           IQ RGRAR  NS+ IL+   G++++R
Sbjct: 794 IQRRGRARAKNSRSILLALDGSIEKR 819


>gi|379055827|emb|CCD32417.1| dicer-1, partial [Aphis gossypii]
          Length = 319

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 93/195 (47%), Gaps = 29/195 (14%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L+ T+   HEG+LS  RS  V N 
Sbjct: 65   SVILQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQVSNL 124

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP---------GQLSLRPVPCE----CGVDTLE 1165
             L++LG  +     +  + F+P   W+ P           L    +P        + T +
Sbjct: 125  NLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEKALINASIPTSLWNMITLPTFK 184

Query: 1166 VPLDGK-----------FFTQD---TKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVG 1211
             P D +           F  +D   T + V       H  +  K+IADC EALIGAY + 
Sbjct: 185  DPTDKEIEEVIQQFKVGFSNEDLESTPLFVPYNLVTQHS-IPDKSIADCVEALIGAYLIS 243

Query: 1212 GGLIAALYMMKWLGI 1226
             G   AL  M WLGI
Sbjct: 244  CGARGALLFMSWLGI 258


>gi|147920338|ref|YP_685889.1| Hef nuclease [Methanocella arvoryzae MRE50]
 gi|110621285|emb|CAJ36563.1| putative type III restriction-modification system, restriction
           subunit [Methanocella arvoryzae MRE50]
          Length = 792

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 121/512 (23%), Positives = 223/512 (43%), Gaps = 72/512 (14%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  + + A  ++++ VL TG GKT+IA+++I +  QA    G    ++ L+PT  LV
Sbjct: 19  RSYQETLSQKALEKSSLIVLPTGLGKTIIALLVILNRLQA---GGPGAKVLMLSPTKPLV 75

Query: 107 HQQYDVIRVHTDFEVEE--YYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            Q     R     + E+   +      E  +  W    +K  V+V TPQ++ + L     
Sbjct: 76  EQHASFFRKAMAIDPEKIVVFTGSTPPEERADLW----DKATVIVSTPQVIENDLLCRRF 131

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEG 224
           +L+ V  +V DE H ATGN+ Y  I K +  ++           SP+V    +S      
Sbjct: 132 TLEDVTVVVFDEAHRATGNYAYVYIAKRYMEQA----------RSPLVLGITASPGSTPE 181

Query: 225 QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
           +I+E+  +L   +  +E KTE +  V     +   YD+            +V W + +  
Sbjct: 182 KINEVRESL--AIERVEVKTENDPDV-----APYIYDK------------DVEWIRVNVP 222

Query: 285 LSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC--------------AY 330
             K    ++     ++D+ K L +    Y   I+    EL L+               +Y
Sbjct: 223 -DKANEIRILLEAIVEDRAKKLFEMGVIYSKNIVLNKKELLLLQQRLQAAIARGSSPESY 281

Query: 331 EAVKICLEKVLKAQEECE-IYRQSSLQCKYFLEEVLHVIGS--ALPLADKIFLDFGFDYS 387
           +A+ +  E ++K     + I  Q  L  + + E +     +        ++F D    ++
Sbjct: 282 KAISVVAE-IMKVGHAIDLIQTQGVLPLRRYFERMKEEASTKGGSKATRRLFEDARLQHA 340

Query: 388 KAV-----DLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
             V     ++   + K+ E++   L    +++V  I+F      A VV    K++  +  
Sbjct: 341 MRVTNETDEVNPKTEKVAEIVLEQLQANPASKV--IVFTNYRDTADVV---AKRLAEVEG 395

Query: 443 LTVAYLTGSTTSVD--ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
           +      G  + ++   L+ K Q E+L+ FR G+ N L AT V EEG+ +P+   V+ ++
Sbjct: 396 IKPVRFVGQASKLNDKGLSQKKQVEILDRFRAGEYNTLIATSVAEEGLDIPSTDLVLFYE 455

Query: 501 -LPKTVSSYIQSRGR-ARQHNSQFILMLERGN 530
            +P  + S IQ RGR  R    + ++++ +G 
Sbjct: 456 PVPSEIRS-IQRRGRTGRNTVGRVVVLISKGT 486


>gi|378728821|gb|EHY55280.1| fanconi anemia group M protein [Exophiala dermatitidis NIH/UT8656]
          Length = 1143

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 117/516 (22%), Positives = 209/516 (40%), Gaps = 62/516 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  +       N +  L TG GKT IA  ++ +  +  ++      ++F+APT  LV
Sbjct: 259 RDYQYNIVHKGLFHNLLVALPTGLGKTFIAATIMLNWFRWTEN----AQMVFVAPTKPLV 314

Query: 107 HQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            QQ D       + R  T     E   A   +EW          +  V  MTPQ L++ L
Sbjct: 315 SQQVDACFHIAGIPRSQTTMLTGEVPPAIRAEEW---------QEKRVFFMTPQTLINDL 365

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-VVRKGVSS 218
           +        +  IV+DE H ATGN+ Y +++K F  + +   +V  +TA+P    + V  
Sbjct: 366 KNGMCDPKKIVLIVVDEAHKATGNYAYVEVVK-FLRRFNQSFRVLALTATPGATVEAVQE 424

Query: 219 AMDCEGQISEL----ESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKG 272
            ++  G I+ +    E +LD + F      E E+F  S + +        FC +   L G
Sbjct: 425 VINGLG-IARVEIRTEDSLDIREFVHSRDIETEIFENSDEIAMSL---ELFCAAVRPLMG 480

Query: 273 KLEVS---WSKFDASLSKLQG-----SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDEL 324
           +L      W K D S+  L G      Q    +        L+ ++    A ++     L
Sbjct: 481 ELNSQNAYWGK-DPSMITLYGLKKASDQWRLSEAGRRAPAGLKWKMQGIFAVLMSLAHNL 539

Query: 325 GLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF 384
            L+  Y  +     K+    +E      +  + KY  +   +     L    +I+++   
Sbjct: 540 ELL-KYHGIGPFYHKMKAFADEA-----AGGKGKYAKQVANNENFQKLMNRLRIWVN-DP 592

Query: 385 DYSKAVDLGYISTKLHELLQLFLSFGKSTQ----------VLCIIFVERIIAAKVVERFV 434
           ++     L Y+ T    +L  F+  G+  Q             ++F     +A+ + R +
Sbjct: 593 EFVGHPKLAYLKTV---VLNHFMDAGEGQQGSGNVTQRPSTRIMVFAHYRDSAEEIVRVL 649

Query: 435 KKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
            +   L    V      T   + +  K Q +V++ F+ G  N + AT + EEG+ +    
Sbjct: 650 NRHGPLIRARVFVGQSGTKGSEGMDQKTQMDVIQKFKAGTYNTIVATSIGEEGLDIGEVD 709

Query: 495 YVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
            ++ +D  K+    +Q  GR  R+   + +L+L +G
Sbjct: 710 LIVCYDCSKSPIRMLQRMGRTGRKRAGKIVLLLMKG 745


>gi|379055825|emb|CCD32416.1| dicer-1, partial [Rhopalosiphum padi]
          Length = 318

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 91/194 (46%), Gaps = 27/194 (13%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S++L+ALT     +  ++ERLE +GDS LKYA++ +L+ T+   HEG+LS  RS  V N 
Sbjct: 64   SVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQVSNL 123

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP---------GQLSLRPVPCE----CGVDTLE 1165
             L++LG  +     +  + F+P   W+ P           L    +P        + T +
Sbjct: 124  NLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEKALINASIPTSLWNMITLPTFK 183

Query: 1166 VPLDGKFFTQDTKVVVGKPCD-------------MGHRWMGSKTIADCAEALIGAYYVGG 1212
             P D +      +  VG   D             +    +  K+IADC EALIGAY +  
Sbjct: 184  DPTDKEIEEVIQQFKVGFSNDDLENTPLFVPYNLVTQHSIPDKSIADCVEALIGAYLISC 243

Query: 1213 GLIAALYMMKWLGI 1226
            G   AL  M WLGI
Sbjct: 244  GARGALLFMSWLGI 257


>gi|379055823|emb|CCD32415.1| dicer-1, partial [Rhopalosiphum padi]
          Length = 318

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 91/194 (46%), Gaps = 27/194 (13%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S++L+ALT     +  ++ERLE +GDS LKYA++ +L+ T+   HEG+LS  RS  V N 
Sbjct: 64   SVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQVSNL 123

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP---------GQLSLRPVPCE----CGVDTLE 1165
             L++LG  +     +  + F+P   W+ P           L    +P        + T +
Sbjct: 124  NLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEKALINASIPTSLWNMITLPTFK 183

Query: 1166 VPLDGKFFTQDTKVVVGKPCD-------------MGHRWMGSKTIADCAEALIGAYYVGG 1212
             P D +      +  VG   D             +    +  K+IADC EALIGAY +  
Sbjct: 184  DPTDKEIEEVIQQFKVGFSNDDLENTPLFVPYNLVTQHSIPDKSIADCVEALIGAYLISC 243

Query: 1213 GLIAALYMMKWLGI 1226
            G   AL  M WLGI
Sbjct: 244  GARGALLFMSWLGI 257


>gi|379055845|emb|CCD32426.1| dicer-1a, partial [Acyrthosiphon svalbardicum]
          Length = 319

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 113/259 (43%), Gaps = 46/259 (17%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S++L+ALT     +  ++ERLE +GDS LKYA++ +L+ T+   HEG+LS  RS  V N 
Sbjct: 65   SVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQVSNL 124

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP---------GQLSLRPVPC----ECGVDTLE 1165
             L++LG  +     +  + F+P   W+ P           L    +P     +  + T +
Sbjct: 125  NLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEKALINASIPTTLWNKITLPTFK 184

Query: 1166 VPLDGK-----------FFTQD---TKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVG 1211
             P D +           F  +D   T + V       H  +  K+IADC EALIGAY + 
Sbjct: 185  DPTDKEIEEVIQQFKNGFSNEDVENTPLFVPYNLVTQHS-IPDKSIADCVEALIGAYLIS 243

Query: 1212 GGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD--------------I 1257
             G   AL  M WLGI     +  +DD           P +  + D               
Sbjct: 244  CGARGALLFMSWLGIRV---LPTLDDSKLGYLKPPSSPLLRNVDDPEGELTKLMDGFESF 300

Query: 1258 ESKIGYEFTVKFLLQEAIT 1276
            E  +GY F  +  L +A+T
Sbjct: 301  EQHLGYRFQDRSYLLQAMT 319


>gi|119850851|gb|AAI27164.1| Ddx58 protein [Mus musculus]
          Length = 924

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 29/247 (11%)

Query: 16  HSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTM 74
            +P PP   SS + H+              PR YQL++   AK+ +NTI    TG GKT 
Sbjct: 223 QNPGPPSEASSNNLHSP-----------LKPRNYQLELALPAKKGKNTIICAPTGCGKTF 271

Query: 75  IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD---FEVEEYYGAKGVD 131
           +++++ +   +     G K  ++F A  + +  QQ  V   + +   + +    GA    
Sbjct: 272 VSLLICEHHLKKFPC-GQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATS-- 328

Query: 132 EWDSQCWQKEINKNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGNHPYTKIM 190
             DS   Q  I  ND++++TPQIL++ L   A  SL +   ++ DECH+ + NHPY +IM
Sbjct: 329 --DSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIM 386

Query: 191 KEFY-HK----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIEDK- 243
             +  HK     D  P+V G+TAS  V     +A +    I +L + LD+ V  T+ D  
Sbjct: 387 FRYLDHKLGESRDPLPQVVGLTASVGV-GDAKTAEEAMQHICKLCAALDASVIATVRDNV 445

Query: 244 TEMEVFV 250
            E+E  V
Sbjct: 446 AELEQVV 452



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS--TTSVDALTPKVQKEVLESFRG-GK 474
           I+FV+       +++++++ P L+ L    LTG   T     +T   QK VLE+FR  G 
Sbjct: 630 ILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGD 689

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR 534
            N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R  +S+  L+    ++ ++
Sbjct: 690 NNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLLTSSADVIEK 749

Query: 535 NK 536
            K
Sbjct: 750 EK 751


>gi|72010927|ref|XP_783556.1| PREDICTED: probable ATP-dependent RNA helicase DDX58-like
           [Strongylocentrotus purpuratus]
          Length = 927

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 101/194 (52%), Gaps = 10/194 (5%)

Query: 21  PDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVML 79
           P +G+ G D   D   S  +        YQ+++ E A +  NT  V  TG+GKT +AV +
Sbjct: 207 PRIGAPGADRLTDIRPSIGHLETLRLEDYQVELAEPALQGHNTCVVAPTGSGKTYVAVAV 266

Query: 80  IKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139
            +++ +  KS G  K +IF+   V LVHQQ  V + +   +V    G  G  +       
Sbjct: 267 AQEVLR--KSPG--KKVIFVVNQVPLVHQQSTVFKKYIK-DVAYICGDHGQPQITRLPMD 321

Query: 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HKSD 198
           + + KNDV+V+T QIL+DAL K  +S + +  IV DECH    +  Y  IM ++   K  
Sbjct: 322 QVLRKNDVVVLTAQILVDALTKGQVSFNQIGIIVFDECHETKKDSQYNAIMAKYMEQKLK 381

Query: 199 NK---PKVFGMTAS 209
           NK   P++ GMTAS
Sbjct: 382 NKKPLPQILGMTAS 395



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 5/123 (4%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
            I+F + I +   ++++V +   L  L    L G       +  + Q +VL++FR G   
Sbjct: 623 AILFTQTIASTWALQKWVMETDSLKDLHPEVLVGCRNP--GMNLRHQTDVLDNFRNGVHK 680

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE--RGNLKQR 534
           LL AT VI++G+ +P C++V R++      + IQ+RGR R+   +F L++   RG L  +
Sbjct: 681 LLIATSVIQQGIDIPACNFVYRYNYITDAVARIQARGRTRKPGGRFDLVVHDYRG-LDGK 739

Query: 535 NKL 537
           +KL
Sbjct: 740 DKL 742


>gi|290989569|ref|XP_002677410.1| hypothetical protein NAEGRDRAFT_48963 [Naegleria gruberi]
 gi|284091017|gb|EFC44666.1| hypothetical protein NAEGRDRAFT_48963 [Naegleria gruberi]
          Length = 1214

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 89/261 (34%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDI---------------------- 83
           PR YQL++   +   N+I +L TG GKT++A +LI  +                      
Sbjct: 29  PRAYQLELLRESIDGNSICILPTGTGKTLLACLLIDQLLHQNDKKEYMGDEYFLSSKCSC 88

Query: 84  ----AQAIKSNG------FKKLIIFLAPTVHLVHQQYDVI------------RVHTDFEV 121
                +   +NG        K I FL PT  L  QQ + I            ++  DF +
Sbjct: 89  CISDQKKPPTNGPPDKKKLTKKIFFLVPTTALRKQQQEAIFKYFYKRECSKMKIKKDFTI 148

Query: 122 EEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181
           +            S+ W       +V+V TPQILL+AL+   +S + +  +V DE HHAT
Sbjct: 149 DS-----------SKSW-------NVIVSTPQILLNALQSQIISFEDILLLVFDEAHHAT 190

Query: 182 GNHPYTKIMKEFYHKSDNK----------------------PKVFGMTASPVVRKGVSSA 219
            +HPY K+M+++YH  +NK                      PK+ G+TA+P  +    ++
Sbjct: 191 KDHPYVKLMRDYYH--NNKPIDPSLLAYNFNFLKDRQPIELPKILGLTATPASQSLYKTS 248

Query: 220 MDCEG---QISELESTLDSQV 237
           ++      + ++LE +LD+ +
Sbjct: 249 LNEHTLFLRKAKLEFSLDASI 269



 Score = 77.0 bits (188), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 26/223 (11%)

Query: 394 YISTKLHELLQLFLSFGKSTQVL-CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGST 452
           +IS K+  L  L  ++  + + + CIIF ERI+  K + +  +       L    L GS+
Sbjct: 377 FISDKVKILFDLVDTYENTNENMRCIIFAERIVHVKAIVKMFRMYRKFIPLNCKELIGSS 436

Query: 453 TSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
                ++ + Q  V++ F      LL AT   EEG+++  CS V++FD+  T   +IQS 
Sbjct: 437 ----VMSRQAQATVVKEF-SHTTRLLVATKAGEEGLNISKCSLVVQFDICNTTREHIQSM 491

Query: 513 GRARQHNSQFILMLERGNLKQRNKLFDIIRSERS-VTDTALSRDPEACFLKACTYVKTKS 571
           GRAR   S+++++ ++ +  Q   L ++  +ERS + DTAL    E        Y+K++ 
Sbjct: 492 GRARHELSRYVVLYDKDDYSQIIMLTNMGNNERSIIVDTALEELKE--------YIKSEK 543

Query: 572 YIVESTGASVTTDSSVNLIHRYCEMLPSDK------YYTPKPI 608
            I+ +      T   +  +    E L  D+       Y PKPI
Sbjct: 544 VIITN-----DTQEDIEPLISSIENLSDDEEIEKKDTYIPKPI 581


>gi|157059804|gb|AAI52541.1| Ddx58 protein [Mus musculus]
          Length = 925

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 29/247 (11%)

Query: 16  HSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTM 74
            +P PP   SS + H+              PR YQL++   AK+ +NTI    TG GKT 
Sbjct: 224 QNPGPPSEASSNNLHSP-----------LKPRNYQLELALPAKKGKNTIICAPTGCGKTF 272

Query: 75  IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD---FEVEEYYGAKGVD 131
           +++++ +   +     G K  ++F A  + +  QQ  V   + +   + +    GA    
Sbjct: 273 VSLLICEHHLKKFPC-GQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATS-- 329

Query: 132 EWDSQCWQKEINKNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGNHPYTKIM 190
             DS   Q  I  ND++++TPQIL++ L   A  SL +   ++ DECH+ + NHPY +IM
Sbjct: 330 --DSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIM 387

Query: 191 KEFY-HK----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIEDK- 243
             +  HK     D  P+V G+TAS  V     +A +    I +L + LD+ V  T+ D  
Sbjct: 388 FRYLDHKLGESRDPLPQVVGLTASVGV-GDAKTAEEAMQHICKLCAALDASVIATVRDNV 446

Query: 244 TEMEVFV 250
            E+E  V
Sbjct: 447 AELEQVV 453



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS--TTSVDALTPKVQKEVLESFRG-GK 474
           I+FV+       +++++++ P L+ L    LTG   T     +T   QK VLE+FR  G 
Sbjct: 631 ILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGD 690

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR 534
            N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R  +S+  L+    ++ ++
Sbjct: 691 NNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLLTSSADVIEK 750

Query: 535 NK 536
            K
Sbjct: 751 EK 752


>gi|153945886|ref|NP_766277.3| probable ATP-dependent RNA helicase DDX58 [Mus musculus]
 gi|341940435|sp|Q6Q899.2|DDX58_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX58; AltName:
           Full=DEAD box protein 58; AltName: Full=RIG-I-like
           receptor 1; Short=RLR-1; AltName: Full=Retinoic
           acid-inducible gene 1 protein; Short=RIG-1; AltName:
           Full=Retinoic acid-inducible gene I protein; Short=RIG-I
 gi|148673498|gb|EDL05445.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [Mus musculus]
 gi|189442795|gb|AAI67209.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 [synthetic construct]
          Length = 926

 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 29/247 (11%)

Query: 16  HSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTM 74
            +P PP   SS + H+              PR YQL++   AK+ +NTI    TG GKT 
Sbjct: 225 QNPGPPSEASSNNLHS-----------PLKPRNYQLELALPAKKGKNTIICAPTGCGKTF 273

Query: 75  IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD---FEVEEYYGAKGVD 131
           +++++ +   +     G K  ++F A  + +  QQ  V   + +   + +    GA    
Sbjct: 274 VSLLICEHHLKKFPC-GQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATS-- 330

Query: 132 EWDSQCWQKEINKNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGNHPYTKIM 190
             DS   Q  I  ND++++TPQIL++ L   A  SL +   ++ DECH+ + NHPY +IM
Sbjct: 331 --DSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIM 388

Query: 191 KEFY-HK----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIEDK- 243
             +  HK     D  P+V G+TAS  V     +A +    I +L + LD+ V  T+ D  
Sbjct: 389 FRYLDHKLGESRDPLPQVVGLTASVGV-GDAKTAEEAMQHICKLCAALDASVIATVRDNV 447

Query: 244 TEMEVFV 250
            E+E  V
Sbjct: 448 AELEQVV 454



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS--TTSVDALTPKVQKEVLESFRG-GK 474
           I+FV+       +++++++ P L+ L    LTG   T     +T   QK VLE+FR  G 
Sbjct: 632 ILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGD 691

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR 534
            N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R  +S+  L+    ++ ++
Sbjct: 692 NNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLLTSSADVIEK 751

Query: 535 NK 536
            K
Sbjct: 752 EK 753


>gi|20095114|ref|NP_614961.1| Hef nuclease [Methanopyrus kandleri AV19]
 gi|19888409|gb|AAM02891.1| ERCC4-like helicase-nuclease [Methanopyrus kandleri AV19]
          Length = 741

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 209/466 (44%), Gaps = 61/466 (13%)

Query: 61  NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI-RVHTDF 119
           NT+ V+ TG GKT I VM++ ++    ++       +FLAPTV LV+Q    I R     
Sbjct: 31  NTLVVIPTGLGKTAIGVMVLSELVDEGRA-------VFLAPTVPLVNQHARFIERATRGL 83

Query: 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH 179
           +V+   G         +  + E  K+DV+V TP ++ + + +  +  D    ++ DE H 
Sbjct: 84  DVKALTG-----RVRPERRKVEWKKSDVIVATPHVIRNDIIEGRIDPDEASVVIFDEAHR 138

Query: 180 ATGNHPYTKIMKEFYHKSDNKPKVFGMTASP---VVR-KGVSSAMDCEGQISELESTLDS 235
           A G +PY  + KEF     N  KV G+TASP   V R K V   +  E  I + E   D 
Sbjct: 139 AVGGYPYVYVSKEF-----NCLKV-GLTASPGSDVKRIKEVVQNLGIERIIVKTEEDPDV 192

Query: 236 QVFTIEDKTE-MEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLN 294
           + +    K E ++V +P   ++ R   Q  F     + +LE+        +  LQ S+  
Sbjct: 193 KKYLGRVKVEWVDVELPEWFDNARRELQRAF-----ERRLELL-----EDMGFLQSSRNV 242

Query: 295 CYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354
               +    + +R+Q++    +  +C   LG++   EA++I   + +   +  E + +  
Sbjct: 243 WVGKLLSLREEIREQMAKRRERASWCSRALGVVA--EALRIARAREILETQGIEPFLR-- 298

Query: 355 LQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS----KAVDLGYIST--KLHELLQLFLS 408
              +   E      GS+L    +I  D  F  +    K+  L       KL E+ +L   
Sbjct: 299 -YVERLTERKRSSGGSSL---RRILGDPNFQRAVRECKSASLRDEPDHPKLPEVEELVKD 354

Query: 409 FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLE 468
              +     ++F + +  AK++  ++K++     ++V  L G     + +    Q +V++
Sbjct: 355 VESA-----LVFTQYVDTAKLIADYLKEI----GISVGVLLGK----EHMKEHEQLDVIK 401

Query: 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
           S + G+  +L +T V EEG+ +P C  V+ ++   +    IQ  GR
Sbjct: 402 SIKRGECRVLVSTSVGEEGLDLPTCEEVVLYEPVPSEIRTIQRIGR 447


>gi|350596885|ref|XP_003484332.1| PREDICTED: probable ATP-dependent RNA helicase DDX58-like, partial
           [Sus scrofa]
          Length = 624

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 11/208 (5%)

Query: 46  PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           PR YQL++   A+  +NTI    TG GKT +++++ +   +     G K  ++F A  + 
Sbjct: 250 PRKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKF-PRGRKGKVVFFAIQLP 308

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           +  QQ  V   H +    +  G  G    D+ C ++ +  ND++++TPQIL++ L    +
Sbjct: 309 VYEQQKSVFSKHFERLGYKVAGISGATS-DTVCVEQIVENNDIIILTPQILVNCLTNGTI 367

Query: 165 -SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSS 218
            SL +   ++ DECH+ +  HPY  IM  +  +     SD+ P+V G+TAS  V    + 
Sbjct: 368 PSLSVFTLMIFDECHNTSKQHPYNVIMFNYLDRKLGGSSDSLPQVIGLTASVGVGDAKNK 427

Query: 219 AMDCEGQISELESTLDSQVF-TIEDKTE 245
           A   E  I +L ++LD+ V  T+ D  E
Sbjct: 428 AEATE-YICKLCASLDTSVIATVRDNLE 454


>gi|444518375|gb|ELV12129.1| Endoribonuclease Dicer [Tupaia chinensis]
          Length = 974

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 1029 PSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVL 1088
            P V + L+   LAS+    +    R       LIL+ALT     + F++ERLE+LGDS L
Sbjct: 316  PGVARALQD-RLASEQSPRVGYSPRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFL 374

Query: 1089 KYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
            K+A++ +LF TYP  HEG+LS  RS  V N  L++LG  + L   +  S FDP   W+ P
Sbjct: 375  KHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPP 434

Query: 1148 G 1148
            G
Sbjct: 435  G 435



 Score = 64.3 bits (155), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 857  PKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 916

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 917  AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 968

Query: 1441 KRI 1443
             ++
Sbjct: 969  PQV 971



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 50  QLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAPTVHLVH 107
           ++++ E A   NTI  L TG+GKT IAV+L K+++  I+ +  +  K  +FL  + H   
Sbjct: 30  EVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRDGKRTVFLVNSDHPYR 89

Query: 108 QQYDVIR 114
           +   ++R
Sbjct: 90  EIMKILR 96


>gi|326368642|gb|ADZ55452.1| retinoic acid-inducible protein I [Cyprinus carpio]
          Length = 946

 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 110/203 (54%), Gaps = 20/203 (9%)

Query: 60  RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119
           +NTI    TG GKT++A+ + +     +K    K  I+FLA  V +  QQY + + H  F
Sbjct: 268 QNTIICAPTGCGKTIVALAISE---YHLKQFPEKAKIVFLATKVDVYEQQYKLFKEH--F 322

Query: 120 EVEE----YYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVI 174
             ++      G  G  ++ S  W   I  +D++VMT QIL++AL+ A + SL+I+  I+ 
Sbjct: 323 SSKDPNIRVTGMCGDMDYLSVRWL--IEHHDIVVMTAQILVNALQSAEVPSLEILSLILF 380

Query: 175 DECHHATGNHPYTKIMKEFYH-----KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISEL 229
           DECH+ TG HPY  IM  +        + + P++ G+TAS  +     + ++ E  I +L
Sbjct: 381 DECHNTTGKHPYNNIMTRYLDTKLTSSTHSLPQIVGLTASVGI-GSFKNGLEAENNILQL 439

Query: 230 ESTLDSQVFT--IEDKTEMEVFV 250
            + LD++V T   E K E++ +V
Sbjct: 440 CANLDTRVITTVTEHKDELKSYV 462



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 6/139 (4%)

Query: 393 GYISTKLHEL-LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG- 450
           G  + KL EL   L   +  + Q   ++FV+    A  +++++ +   L  L    L G 
Sbjct: 612 GEQNPKLDELKFILEEEYHNNDQTRTVMFVKTRALADAMKKWIDETDSLKFLKPGVLIGK 671

Query: 451 ---STTSVDALTPKVQKEVLESFRGG-KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
              S  +   +TP  QK +LESF+   +  +L AT V +EG+ +P C+ V+ ++    V 
Sbjct: 672 GRKSNFTGSGMTPNNQKGILESFKSSDQSKMLIATSVADEGIDIPQCNLVLMYEYVGNVV 731

Query: 507 SYIQSRGRARQHNSQFILM 525
             +Q RGR R   S+  L+
Sbjct: 732 KMVQVRGRGRAEGSRCFLI 750


>gi|379055867|emb|CCD32437.1| dicer-1a, partial [Acyrthosiphon kondoi]
 gi|379055869|emb|CCD32438.1| dicer-1a, partial [Acyrthosiphon kondoi]
          Length = 319

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 112/259 (43%), Gaps = 46/259 (17%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S++L+ALT     +  ++ERLE +GDS LKYA++ +L+ T+   HEG+LS  RS  V N 
Sbjct: 65   SVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQVSNL 124

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP---------GQLSLRPVPCE----CGVDTLE 1165
             L++LG  +     +  + F+P   W+ P           L    +P        + T +
Sbjct: 125  NLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEKALINASIPTTLWNMITLPTFK 184

Query: 1166 VPLDGK-----------FFTQD---TKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVG 1211
             P D +           F  +D   T + V       H  +  K+IADC EALIGAY + 
Sbjct: 185  DPTDKEIEEVIQQFKNGFSNEDVENTPLFVPYNLVTQHS-IPDKSIADCVEALIGAYLIS 243

Query: 1212 GGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD--------------I 1257
             G   AL  M WLGI     +  +DD           P +  + D               
Sbjct: 244  CGARGALLFMSWLGIRV---LPTLDDSKLGYLKPPSSPLLRNVDDPEGELTKLMDGFESF 300

Query: 1258 ESKIGYEFTVKFLLQEAIT 1276
            E  +GY F  +  L +A+T
Sbjct: 301  EQHLGYRFQDRSYLLQAMT 319


>gi|406356425|gb|AFS34609.1| retinoic acid-inducible protein I [Ictalurus punctatus]
          Length = 937

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 17/200 (8%)

Query: 61  NTIAVLETGAGKTMIAVMLIKDIAQA-IKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119
           NTI    TG GKT++AV    DI +  +K    K  ++F+A  V +  QQY + + H  F
Sbjct: 269 NTIICAPTGCGKTIVAV----DICEHHLKKYPQKAKVVFMATKVEVYEQQYKLFKEH--F 322

Query: 120 EVEEYYGAKGV-DEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDEC 177
             +     KGV  +         ++ NDVL+MTPQIL++AL++  + SL+    +++DEC
Sbjct: 323 SKDPDIRVKGVCGDMSDVSLPTLVSNNDVLLMTPQILVNALQRGDVESLNTFTLLLLDEC 382

Query: 178 HHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELEST 232
           H+ TG HPY  IM  +        + + P+V G TAS  +     +  + E  I +L + 
Sbjct: 383 HNTTGKHPYNNIMSLYIDTKHTTHTHSLPQVVGFTASVGI-GSFKNVPEAENNICQLCAN 441

Query: 233 LDSQVFT--IEDKTEMEVFV 250
           LD++V T   E+  E+  FV
Sbjct: 442 LDARVITTVTENIDELRSFV 461



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 7/144 (4%)

Query: 401 ELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG----STTS 454
           E LQ  L   +G + Q   ++FV     A  +++++++   L  L    L G    S  +
Sbjct: 619 EELQFILDEEYGNNVQTRTVLFVRTRALADALKKWIEETESLKFLKPGVLIGRGRKSQLT 678

Query: 455 VDALTPKVQKEVLESFRG-GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
              +T   QK VL+SF+   +  +L AT V +EG+ +P C+ V+ ++    V + +Q RG
Sbjct: 679 GSGMTLTGQKGVLDSFKSSNESKILIATSVADEGIDIPQCNLVLMYEYVGNVVTMVQVRG 738

Query: 514 RARQHNSQFILMLERGNLKQRNKL 537
           R R   S+  L+  R     + KL
Sbjct: 739 RGRAQGSRCFLISSRQERIDKEKL 762


>gi|379055861|emb|CCD32434.1| dicer-1, partial [Aulacorthum solani]
 gi|379055863|emb|CCD32435.1| dicer-1, partial [Aulacorthum solani]
          Length = 319

 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 112/259 (43%), Gaps = 46/259 (17%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S++L+ALT     +  ++ERLE +GDS LKYA++ +L+ T+   HEG+LS  RS  V N 
Sbjct: 65   SVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQVSNL 124

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP---------GQLSLRPVPCE----CGVDTLE 1165
             L++LG  +     +  + F+P   W+ P           L    +P        + T +
Sbjct: 125  NLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEKALINASIPTTLWNMITLPTFK 184

Query: 1166 VPLDGK-----------FFTQD---TKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVG 1211
             P D +           F  +D   T + V       H  +  K+IADC EALIGAY + 
Sbjct: 185  DPTDKEIEEVIQQFKVGFSNEDIENTPLFVPYNLVTQHS-IPDKSIADCVEALIGAYLIS 243

Query: 1212 GGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD--------------I 1257
             G   AL  M WLGI     +  +DD           P +  + D               
Sbjct: 244  CGARGALLFMSWLGIRV---LPTLDDSKLGYLKPPSSPLLRNVDDPEGELTKLMDGFESF 300

Query: 1258 ESKIGYEFTVKFLLQEAIT 1276
            E  +GY F  +  L +A+T
Sbjct: 301  EQHLGYHFQDRSYLLQAMT 319


>gi|165972365|ref|NP_001107132.1| Fanconi anemia, complementation group M [Danio rerio]
 gi|126843130|gb|ABO27624.1| Fanconi anemia M [Danio rerio]
          Length = 1761

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 132/528 (25%), Positives = 219/528 (41%), Gaps = 91/528 (17%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           N   R YQL+V E A  +NT+  L TG GKT IA +L+ +  +   +      I+F+APT
Sbjct: 74  NLPLREYQLRVCEAALLQNTLVCLPTGLGKTFIASVLMYNYYRWFPAGK----IVFMAPT 129

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ--ILLDALR 160
             LV QQ           +E  Y   G+        Q+   +       PQ   L  + R
Sbjct: 130 KPLVAQQ-----------IEACYRVMGIP-------QEHTAELTGSTAAPQRRSLWSSRR 171

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-----VVRKG 215
             FL+    C +VIDE H ATGNH Y ++++E   K   + +V  ++A+P      V++ 
Sbjct: 172 VFFLTPPDRC-VVIDEAHKATGNHAYCQVIREL-RKQTPQFRVLALSATPGGDVKAVQQV 229

Query: 216 VSSAMDCEGQIS--ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD----------QS 263
           +S+ +     IS  EL S     V T   +  +E  V    ES   Y            S
Sbjct: 230 ISNLL-----ISHIELRSEDSPDVQTHVHQRSLEKMVVPLGESLTHYQTRYLQVLERFSS 284

Query: 264 KFCGSDLKGKLEV-SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQL----SDYHAKI- 317
           +     L  + ++ ++SK+   L++ Q      ++     H    +Q      D+   I 
Sbjct: 285 RLTQMRLLNQRDLRAFSKYQIILAREQ------FRRNPPPHIQGPQQQGVLEGDFALLIS 338

Query: 318 LYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLE---EVLHVIGSALPL 374
           LY   EL L     ++ + ++ +     E    R    +C  F++   E+ ++  +A   
Sbjct: 339 LYHGFELLLQMGIRSLFLFIQNIFTGPRESSRVRNELQRCSLFMDLYREMENMFNTA--- 395

Query: 375 ADKIFLDFGFDYSKAVDLGYIST--KLHEL----LQLFLSFGKSTQVLCI-----IFVE- 422
                       S+ ++  Y+ T  KL +L    L+ F +  +S+ V  +     IF   
Sbjct: 396 ------------SRGLEEPYVYTHPKLQKLDEVVLRHFQTCAESSDVSAVDTRVMIFSSY 443

Query: 423 RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATD 482
           R    ++ E   +  P +  +T      +   V   T K Q EV+  FR G  N L +T 
Sbjct: 444 RESVQEIAEMLNRHQPLVRVMTFMGQASAGRGVRGFTQKEQLEVVWRFREGGFNTLVSTC 503

Query: 483 VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
           V EEG+ +     ++ FD  K+    +Q  GR  RQ   + +++L  G
Sbjct: 504 VGEEGLDIGEVDLIVCFDAQKSPIRLVQRMGRTGRQRQGRIVVILAEG 551


>gi|167046026|gb|ABZ10544.1| dicer-like protein C [Placozoa sp. DMJ-2008]
          Length = 352

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 120/278 (43%), Gaps = 36/278 (12%)

Query: 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQG 1132
            +  ++E LE LGDS LK+ ++ +LF+++PK HEGQL+   +  V N  L KLG    +  
Sbjct: 6    DDINLEGLEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRNDNLLKLGKSTPICE 65

Query: 1133 YIRDSAFDPRR---WVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD--M 1187
            YI    F+  +   W+ PG   L                  K    D KV      D  +
Sbjct: 66   YIIGKPFNLLKNEGWIPPGYKLLS----------------SKVKNLDEKVTSDLDGDKAV 109

Query: 1188 GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVS------LVDDCITR 1241
             H+   SK+IAD  +A++ A  +      A Y + WL  D    ++      L DD    
Sbjct: 110  THQKFSSKSIADVMKAILAAILLEFDERHAKYFISWLDKDIKFTINASAASLLPDDDDIS 169

Query: 1242 ASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLL 1301
            ++  + +   N ++ +E  IGY F  K  +  A+TH+S    Y + N+          L 
Sbjct: 170  SNEINEIYEANNLERLEKVIGYSFQNKLFMIRALTHSS----YHHHNIAIESNQKLEFLG 225

Query: 1302 SQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVG 1339
              I +Y+ +        +S P  K P  L D  E+IV 
Sbjct: 226  DTILQYIIA----RHFFNSHPDAK-PAKLHDFQEAIVN 258



 Score = 47.4 bits (111), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 24/144 (16%)

Query: 1076 SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIR 1135
            S ++LE LGD++L+Y ++ H F ++P     +L   +   V N  L  +G    +  YI 
Sbjct: 217  SNQKLEFLGDTILQYIIARHFFNSHPDAKPAKLHDFQEAIVNNKCLADIGIAIGVSKYIF 276

Query: 1136 DSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKF------FTQDTKVVVGKPCDMGH 1189
              + D  R +   Q  ++ + C+  +D  E+  + +       FT++ K+          
Sbjct: 277  QESPDLFRDI--NQF-VKIITCDYMIDD-EMNYNDRTEALFENFTEEVKI---------- 322

Query: 1190 RWMGSKTIADCAEALIGAYYVGGG 1213
                 K ++D  EALIGA Y+  G
Sbjct: 323  ----PKPMSDVVEALIGAIYIDTG 342


>gi|167046020|gb|ABZ10541.1| dicer-like protein B [Trichoplax adhaerens]
          Length = 357

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 117/238 (49%), Gaps = 24/238 (10%)

Query: 1063 LEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
            L+ALT     + F++E LE LGDS LKYAVS   FL+Y K HEGQLS+ +S  V N  L+
Sbjct: 1    LKALTLARANDDFNLETLEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENLY 60

Query: 1123 KLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVV 1181
            ++G    L GYI     D    WV PG  S+       G   LE  L     +  ++V  
Sbjct: 61   QIGIKMGLPGYIIGHNVDQNDIWVPPG-FSIAKKSDSIG---LEEQLSTLNLSMTSRV-- 114

Query: 1182 GKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAA-LYMMKWLGIDA---DLEVSLVDD 1237
              P     + + +K IAD  EAL+G   +  G  +A  ++   LGI        ++ +DD
Sbjct: 115  -HPT----QKLKNKCIADVMEALLGGILLELGENSANNFITNNLGIKVGRLSHNIAKLDD 169

Query: 1238 CITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS------VQEFYCYQNL 1289
               +   + Y    + +KD+E+ +GY F  + LL  A+THA+       +   CYQ L
Sbjct: 170  DARKEISKIY--NAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRL 225


>gi|374635020|ref|ZP_09706625.1| helicase domain protein [Methanotorris formicicus Mc-S-70]
 gi|373563422|gb|EHP89616.1| helicase domain protein [Methanotorris formicicus Mc-S-70]
          Length = 753

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 132/526 (25%), Positives = 232/526 (44%), Gaps = 91/526 (17%)

Query: 35  PSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK 94
           P    N+I    RIYQ  +   A ++NT+ VL TG GKT IA +    IA  +  N  K 
Sbjct: 6   PLIKPNTIE--ARIYQQVIVANALKKNTLCVLGTGLGKTAIAAL---TIAGILSKNDGKV 60

Query: 95  LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWD--SQCWQKEINKNDVLVMTP 152
           LII  AP+  LV Q Y+ +R   + + ++     G  + +   + W+       + + TP
Sbjct: 61  LII--APSRPLVEQHYNSMRNFLNIDEDKVIVLTGKTQPNKREKLWKD----GKIFIATP 114

Query: 153 QILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVV 212
           QI+ + L    L+++    ++ DE HH TGNH Y  +  +F      K  V G+TASP  
Sbjct: 115 QIVENDLIAGRLNVEDFVLLIADEAHHTTGNHSYAFVANKF----KGKVHVLGLTASP-- 168

Query: 213 RKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCR-------FYDQSKF 265
                S MD   ++ E       +V T ED  +++ +V   +   +       F +  K 
Sbjct: 169 ----GSDMDRILEVCENLGIEHVEVRT-EDDEDVKPYVAKVRIIPKRVSLPKEFEESLKL 223

Query: 266 CGSDLKGKLEVSWSKFDAS----LSKLQGSQLN---CYKDMDDKHKTLRKQLSDYHAKIL 318
               LK +L+V   +F  +    L+K++  +L       D D+K++ LR  ++    K+ 
Sbjct: 224 IKDALKERLKV-LKEFGVTNSINLTKIELIELQKEIFALDRDEKYELLR--IASEALKLF 280

Query: 319 YCLDEL-----GLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALP 373
           + L+ L     G+   Y      +E+ L+ Q      R  S +     ++++ V+ +   
Sbjct: 281 HALEVLETQGRGVFLNY------IER-LRNQ------RTKSAKSIVNDKKIIKVVNNLRQ 327

Query: 374 LADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVV-- 430
           L          ++ K         KL ++++  L      ++  I+F + R    K+V  
Sbjct: 328 L--------NIEHPKF-------EKLIDIIEEILKENNDEKI--IVFAQYRDTVDKIVRL 370

Query: 431 --ERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488
             ER +K + F+          S      ++ K Q + LE F+    N+L +T V EEG+
Sbjct: 371 LNERGIKAIRFVGQ--------SNREGKGMSQKEQIKALEEFKKDG-NVLVSTSVSEEGI 421

Query: 489 HVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERGNLKQ 533
            +   +YVI ++   +   +IQ RGR AR      I+++ +G + +
Sbjct: 422 DISTVNYVIFYEPVPSEIRFIQRRGRAARGEGGMVIILIAKGTVDE 467


>gi|379055851|emb|CCD32429.1| dicer-1a, partial [Acyrthosiphon pisum]
 gi|379055853|emb|CCD32430.1| dicer-1a, partial [Acyrthosiphon pisum]
 gi|379055855|emb|CCD32431.1| dicer-1a, partial [Acyrthosiphon pisum]
 gi|379055857|emb|CCD32432.1| dicer-1a, partial [Acyrthosiphon pisum]
 gi|379055859|emb|CCD32433.1| dicer-1a, partial [Acyrthosiphon pisum]
          Length = 319

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 112/259 (43%), Gaps = 46/259 (17%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S++L+ALT     +  ++ERLE +GDS LKYA++ +L+ T+   HEG+LS  RS  V N 
Sbjct: 65   SVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQVSNL 124

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP---------GQLSLRPVPCE----CGVDTLE 1165
             L++LG  +     +  + F+P   W+ P           L    +P        + T +
Sbjct: 125  NLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEKALINASIPTTLWNMITLPTFK 184

Query: 1166 VPLDGK-----------FFTQD---TKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVG 1211
             P D +           F  +D   T + V       H  +  K+IADC EALIGAY + 
Sbjct: 185  DPTDKEIEEVIQQFKVGFSNEDIENTPLFVPYNLVTQHS-IPDKSIADCVEALIGAYLIS 243

Query: 1212 GGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD--------------I 1257
             G   AL  M WLGI     +  +DD           P +  + D               
Sbjct: 244  CGARGALLFMSWLGIRV---LPTLDDSKLGYLKPPSSPLLRNVDDPEGELTKLMDGFESF 300

Query: 1258 ESKIGYEFTVKFLLQEAIT 1276
            E  +GY F  +  L +A+T
Sbjct: 301  EQHLGYHFQDRSYLLQAMT 319


>gi|302502160|ref|XP_003013071.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371]
 gi|291176633|gb|EFE32431.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371]
          Length = 1490

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 196/457 (42%), Gaps = 68/457 (14%)

Query: 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS 454
           +S K+  L+ L LS   +     IIFVE+   A ++   +   P LTH+   Y  G++  
Sbjct: 439 VSQKVEHLIDL-LSSELTGSSRGIIFVEQRATAVMLSHLISHYPELTHIKSDYFLGNSAF 497

Query: 455 VDA---LT----PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
            D    LT    P   K  +   + GK NLL AT V+EEG+ V  C  V+ FD PK + S
Sbjct: 498 SDRKADLTELSKPGDMKNSIADLKSGKKNLLVATSVLEEGIDVSACDLVVCFDPPKQLRS 557

Query: 508 YIQSRGRARQHNSQFILML---ERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC 564
           ++Q RGRAR+ +S+F++     +    K    + DI++ ER +++               
Sbjct: 558 FVQRRGRARKKSSKFVIFYAEDDTATYKDWEAMEDIMK-ERYLSNKEFIE--RLREEDDE 614

Query: 565 TYVKTKSYIVESTGASVT----------------------TDSSVNLIHRYCEMLPSDKY 602
             V+ +S  +ESTG  VT                       ++  +L H +C  +P +  
Sbjct: 615 EEVEYESLRIESTGYGVTPGLVLWDCLLTIYYSVRALLTLENARAHLSH-FCSTIPCEFT 673

Query: 603 YT-PKPIFKYKSAEEAYECELTLPS--NAPFQTIVGPTS-RNKNLSKQLVCLEACEKLHQ 658
            T P  I      ++    ++ LP+  +  F+   G  + + + ++K+    +A  +L++
Sbjct: 674 DTQPDFIISKTGIKDMLTAKVLLPTVLDLQFREFEGIQAWKREKMAKRDAAFQAYLQLYK 733

Query: 659 VGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVIL 718
            G +NDHL+P     ++  +   +  S      T   E+    P + +S RW        
Sbjct: 734 AGLVNDHLMPEHCRTTDEEIAHIEKRS----SMTTCSEVFN--PWKMVSDRW-------- 779

Query: 719 HAYKFNFACSIV----TEIYSGFVLLIESELDNDVGNFELELYL-VSKTVKATVSSSGQV 773
           H+    +  SIV    TE     +L++   L     NF ++L+   + T+ A+VS     
Sbjct: 780 HSTDTFYQSSIVISSGTEELPRMILILPIPLP---CNFTVKLFWNETSTLSASVSPQELT 836

Query: 774 HLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREF 810
             D D +S       L  + L   +F    +  SR+F
Sbjct: 837 VSDEDIVSAP-----LATHILLSSVFPSRMNGTSRDF 868



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 114/276 (41%), Gaps = 51/276 (18%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
            +P+   K    +PS++  +   +LA +L + I       +I   L+L A+T     E  +
Sbjct: 996  LPVGFAKFALFIPSLIHTIGRYLLAEELSKTILSPIGFQNI--QLVLTAITATSAREDTN 1053

Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
             +RLE LGDS LK   S  L   +P  HEG LS ++   V NS L K   D  L  +I  
Sbjct: 1054 YQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKDSIVSNSRLWKAAVDTGLDQFILT 1113

Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
            + F   +W                      PL    +T +     GK  +   R + +KT
Sbjct: 1114 TCFTGAKW---------------------RPLYNSTYTDN----AGKIGEKSTRKLSTKT 1148

Query: 1197 IADCAEALIGAYYVGGG-------LIAALYMMKWLGIDADLEV------SLVDDCITRAS 1243
            +AD  E+LIG   + GG       L   L  + WL     +E+         DDC     
Sbjct: 1149 LADVVESLIGVAIIDGGENKVLRCLELFLPEINWLPSGERIEILYDSAPDFNDDC----- 1203

Query: 1244 LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
                 PR + +  IE  I Y FT K LL  +++H S
Sbjct: 1204 -----PR-DILSKIEPLIDYSFTKKALLAASLSHPS 1233



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 18/144 (12%)

Query: 94  KLIIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQ-CWQKEINKNDVLVMT 151
           KL+ FLAP V L  QQY  I      ++ +   GA  ++ W +Q  W   +    ++V T
Sbjct: 152 KLVWFLAPRVPLAEQQYRAISEQLPAYQTKILTGADNLERWSTQQIWDAFLLNTRIVVST 211

Query: 152 PQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211
           PQILLD L   F++L  +  +V DE   +  N               + P + G+TASP 
Sbjct: 212 PQILLDVLSNGFITLRRIALLVFDEDQLSETN---------------DLPSILGLTASP- 255

Query: 212 VRKGVSSAMDCEGQISELESTLDS 235
             K +  ++    +  +LE  LD+
Sbjct: 256 TSKLIEDSLSLLMESRQLEQNLDA 279


>gi|397485572|ref|XP_003813917.1| PREDICTED: probable ATP-dependent RNA helicase DHX58 isoform 2 [Pan
           paniscus]
          Length = 578

 Score = 88.6 bits (218), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 130/531 (24%), Positives = 230/531 (43%), Gaps = 83/531 (15%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +  +G K         VHL
Sbjct: 4   RPYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK---------VHL 52

Query: 106 VHQQYDVIRVHTDFE-----VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL- 159
           V Q  +  R   D       +    G +      ++C       +D+L+ T ++L  AL 
Sbjct: 53  VTQHGEEFRRMLDGRWTMTTLSGDMGPRAGFGHLARC-------HDLLICTAELLQMALT 105

Query: 160 ---RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY----HKSDNKPKVFGMTASPVV 212
               +  + L     IV+DECHH   +  Y  IM ++      ++   P+V G+TASP  
Sbjct: 106 SPEEEEHVELTAFSLIVVDECHHTHKDTIYNVIMSQYLELKLQRAQPLPQVLGLTASP-- 163

Query: 213 RKGVSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269
             G   A   +G I+   +L + LD+    +  +         +++ C+ Y+       D
Sbjct: 164 --GTGGASKLDGAINHVLQLCANLDTWCI-MSPQNCCPQLQEHSQQPCKQYNLCHRRSQD 220

Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
             G L          L KL   Q++ + +M +  +    Q+  Y  +++  L E   +  
Sbjct: 221 PFGDL----------LKKLM-DQIHDHLEMPELSRNFGTQM--YEQQVVK-LSEAAALAG 266

Query: 330 YEAVKICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
            +  ++    + +  +   I+         ++LQ  Y  E   HV  + +  A++  L  
Sbjct: 267 LQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE---HVTKTQILCAERRLLAL 323

Query: 383 GFDYSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAK------ 428
            FD  K  +L +++T      KL E+L+  L   F  S     IIF     +A       
Sbjct: 324 -FDDRKN-ELAHLATHGPENPKL-EMLEKILQRQFSSSNSSRGIIFTRTRQSAHSLLLWL 380

Query: 429 VVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488
             ++ ++ V     L +    G+++    +T + Q+EV++ F+ G +NLL AT V EEG+
Sbjct: 381 QQQQGLQTVDIRAQLLIG--AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGL 438

Query: 489 HVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
            +P+C+ V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L +
Sbjct: 439 DIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELIN 489


>gi|86990300|dbj|BAE79254.1| endoribonuclease Dicer [Mesocricetus auratus]
          Length = 132

 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 2/120 (1%)

Query: 74  MIAVMLIKDIAQAIKS--NGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVD 131
            IAV+L K++A  I+   N   K  +FL  + + V QQ   +R H+D +V EY   +   
Sbjct: 1   FIAVLLTKELAHQIRGDLNPRAKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVNA 60

Query: 132 EWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMK 191
            W  + W +E  K+ VL+MT  + L+ L+  +LSL  +  +V DECH A  +HPY +IMK
Sbjct: 61  SWTKERWSQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIMK 120


>gi|379055849|emb|CCD32428.1| dicer-1, partial [Myzus persicae]
          Length = 319

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 87/198 (43%), Gaps = 35/198 (17%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S++L+ALT     +  ++ERLE +GDS LKYA++ +L+ T+   HEG+LS  RS  V N 
Sbjct: 65   SVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQVSNL 124

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTK 1178
             L++LG  +     +  + F+P   W+ P       VP +     +   +    +   T 
Sbjct: 125  NLYRLGKLKMFGERMISTKFEPHDNWLPPCYF----VPHKLEKALINASIPTTLWNMITL 180

Query: 1179 VVVGKPCD------------------------------MGHRWMGSKTIADCAEALIGAY 1208
                 P D                              +    +  K+IADC EALIGAY
Sbjct: 181  PTFKDPTDKEIEEVIQQFKVGFSNENIENTPLFVPYNLVTQHSIPDKSIADCVEALIGAY 240

Query: 1209 YVGGGLIAALYMMKWLGI 1226
             +  G   AL  M WLGI
Sbjct: 241  LISCGARGALLFMSWLGI 258


>gi|392568586|gb|EIW61760.1| ribonuclease III [Trametes versicolor FP-101664 SS1]
          Length = 1232

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 176/476 (36%), Gaps = 106/476 (22%)

Query: 1006 HMPPELLVRVDVPI------SVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPS 1059
            ++ PEL  +  +P       S  ++L+LLPSVM +++S +L  +L  ++  HS    I  
Sbjct: 661  YLIPELTYKFTIPARHVAPYSTFRTLWLLPSVMTKVDSCLLVKELDAKLFHHS----ISE 716

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
              +L AL+T      F+ ERLE LGD+ LK   S  L++T P   EG L   R   + N 
Sbjct: 717  QQLLIALSTRAAWTEFNYERLEFLGDAFLKVIASNFLYVTMPTAGEGTLHNVRQSIIGNK 776

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKV 1179
             LH+      +  +++   F  + W  P   +  P   E   D +E+             
Sbjct: 777  VLHECAMRVGICPFVQHKRFVAKLWQPPHIPA--PTATEPNED-VEMADGEGTGDGGEGK 833

Query: 1180 VVGKPCDMGHR-------WMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEV 1232
               K      +       WMG K +AD  EA++ A ++ GG   AL   + L I      
Sbjct: 834  GNRKKSKKERQLSAQNRLWMGDKVVADVVEAILAAAFLSGGHEGALQAARRLQIPLPNIA 893

Query: 1233 SLVDDCITRASLRSYVPRI-----------NEIKDIESKIGYEFTVKFLLQEAITHASV- 1280
               D   TR   +                 + ++ +++ +G  F+   LL +A+TH S  
Sbjct: 894  QWTD--FTRIGAQQGEQDAGAGAAGAFVLDDTVEAVQAIVGSVFSKPELLAQALTHGSAF 951

Query: 1281 --QEFYCYQNL------------------------------------------------- 1289
               E   Y+ L                                                 
Sbjct: 952  GSSEGASYERLEFIGDAILDFLVARHIFQRHPHLSPGGLTLLKGGMVSNRALAAFCVTTG 1011

Query: 1290 -YKHLQHCSTLLLSQITEYVKSFPK---------------PGETTDSGPSMKAPKALGDL 1333
             ++HL   S  L   I  YV S  +               PG+     P ++ PK L DL
Sbjct: 1012 LHRHLHFASDQLADSIQRYVTSLTELREKEYEAVAREQRLPGQYWLDLP-LEPPKCLSDL 1070

Query: 1334 LESIVGAVLIDTKLNLDEVWR----IFKPILSPIVTPDKLELPPLRELIELCDSLG 1385
            +ESI+GA+ +        V R    +FKP +   V    L   P   L+EL  + G
Sbjct: 1071 VESILGALYVCDGFFEVGVGRFFDAVFKPFMDAHVRLQTLSTNPKVTLLELLQAEG 1126



 Score = 57.0 bits (136), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%)

Query: 395 ISTKLHELLQLFLSF-GKSTQVLCIIFV-ERIIA---AKVVERFVKKVPFLTHLTVAYLT 449
           I+ KL +L+++  S+ G  +    ++ V +R IA   +K+++R    +PF+  + V +  
Sbjct: 86  ITPKLAKLVEVLSSYDGSGSGFRGVVLVKDRAIARTLSKLLQRQEIGLPFIRAVEVEHAA 145

Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
            S        P  Q  +  +F GG+ NLL  T    + +  P  S VI FDL +   +Y 
Sbjct: 146 ASD-------PSYQLNLTRAFGGGQYNLLVLTRTTAD-IEFPPASTVISFDLFEDQLTYA 197

Query: 510 QSRGRARQHNSQFILMLERGNLKQRNKLF-------------------DIIRSERSVTDT 550
               R +  +S  + ++E+GN +QR  L                    D      S T T
Sbjct: 198 HCHARGKGRHSHMLFLIEKGNNEQRKILTRVQMVDADLRGWIAGFVGGDSKHMPPSTTHT 257

Query: 551 ALSRDPEACFLKACTYVKTKSYIVE-STGASVTTDSSVNLIHRYCEMLPSDKYYT---PK 606
            L    E C   +    +   ++++ +T A +    +   IHR           T   P 
Sbjct: 258 TL----EPCLSDSDGEEEDGEFVLDPTTSAHLHKSEAEAAIHRLVAGFEDPTGATQDLPS 313

Query: 607 PIFKYKSAE--EAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALND 664
              + K  +  ++Y   ++LP++     +VGP    K  +++    +ACE+  + G ++ 
Sbjct: 314 VSLERKPGQGAQSYRYTISLPTSFGIPGVVGPYCPTKTQARREAFYKACEESVRSGLMSY 373

Query: 665 HLLP 668
              P
Sbjct: 374 QHFP 377


>gi|379055847|emb|CCD32427.1| dicer-1, partial [Myzus persicae]
          Length = 319

 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 87/198 (43%), Gaps = 35/198 (17%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S++L+ALT     +  ++ERLE +GDS LKYA++ +L+ T+   HEG+LS  RS  V N 
Sbjct: 65   SVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQVSNL 124

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTK 1178
             L++LG  +     +  + F+P   W+ P       VP +     +   +    +   T 
Sbjct: 125  NLYRLGKLKMFGERMISTKFEPHDNWLPPCYF----VPHKLEKALINASIPTTLWNMITL 180

Query: 1179 VVVGKPCD------------------------------MGHRWMGSKTIADCAEALIGAY 1208
                 P D                              +    +  K+IADC EALIGAY
Sbjct: 181  PTFKDPTDKEIEEVIQQFKVGFSNENIENTPLFVPYNLVTQHSIPDKSIADCVEALIGAY 240

Query: 1209 YVGGGLIAALYMMKWLGI 1226
             +  G   AL  M WLGI
Sbjct: 241  LISCGARGALLFMSWLGI 258


>gi|157817529|ref|NP_001100115.1| probable ATP-dependent RNA helicase DDX58 [Rattus norvegicus]
 gi|149045628|gb|EDL98628.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 (predicted) [Rattus
           norvegicus]
          Length = 598

 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 32/243 (13%)

Query: 16  HSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTM 74
            +P PP   S  + H+              PR YQL++   AK+ +NT+    TG GKT 
Sbjct: 225 QNPGPPSEASPNNSHS-----------PLKPRNYQLELALPAKKGKNTVICAPTGCGKTF 273

Query: 75  IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD---FEVEEYYGAKGVD 131
           +++++ +   +    +G K  ++F A  + +  QQ  V   + +   + V    GA    
Sbjct: 274 VSLLICEHHLKNF-PHGQKGKVVFFANQIPVYEQQATVFSRYFERFGYNVAGISGATA-- 330

Query: 132 EWDSQCWQKEINKNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGNHPYTKIM 190
             D+   Q  I  ND++++TPQIL+++L   A  SL +   ++ DECH+ + +HPY +IM
Sbjct: 331 --DNVSVQHIIENNDIVILTPQILVNSLNNGAIPSLSVFTLMIFDECHNTSKHHPYNQIM 388

Query: 191 KEFY-HK----SDNKPKVFGMTASPVV--RKGVSSAMDCEGQISELESTLDSQVF-TIED 242
             +  HK     D  P+V G+TAS  V   K V  AM     I +L + LD+ V  T+ D
Sbjct: 389 FRYLDHKLGGSPDPLPQVIGLTASVGVGDAKTVEEAM---LHICKLCAALDASVIATVRD 445

Query: 243 KTE 245
             E
Sbjct: 446 NVE 448


>gi|89114038|gb|ABD61610.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 129/565 (22%), Positives = 227/565 (40%), Gaps = 98/565 (17%)

Query: 530  NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-TYVKTKSYIVESTGASVTTDSSVN 588
             + Q  ++  ++ S+ + T+       EA    AC    + K +++  TGASV   S++ 
Sbjct: 713  QMAQYREIEQMLLSKCANTEPPEQEQSEAERFSACLAAYRPKPHLL--TGASVDLGSAIA 770

Query: 589  LIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ-TIVGPTSRNKNL 643
            L+++YC  LPSD +     +++   +E A    ++  L LP N+P +  IVG     + L
Sbjct: 771  LVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLPMPTQTL 830

Query: 644  SKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSENNLISKKNESLPG 688
            +++L  L+AC +LH++G L+D L P       ++E        EP +  ++   +E  PG
Sbjct: 831  ARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLSDEPRPG 890

Query: 689  AGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDND 748
              T +R+  +          R        L+  +    C I  E  +    +   E D  
Sbjct: 891  T-TKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPPE-DAQ 948

Query: 749  VGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAKCF----QELFFNGLFGKLFVKSK 803
             G   L    + K    ++ + SG+V +   +++K +      Q +  NG     F    
Sbjct: 949  QGFGILTTKRIPKLSAFSIFTRSGEVKVSL-ELAKERVILTSEQIVCINGFLNYTF---- 1003

Query: 804  SSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKS 863
                        TN L    ++ L  P    N                C  +V  +K  +
Sbjct: 1004 ------------TNVLRLQKFLMLFDPDSTEN----------------CVFIVPTVKAPA 1035

Query: 864  --------FLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAI 915
                    FL   Q N   GN+ P R  P K                DA+  +D VV+  
Sbjct: 1036 GGKHIDWQFLELIQAN---GNTMP-RAVPDK---------ERQAQPFDAQRFQDAVVMPW 1082

Query: 916  HTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQ 971
            +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ + +  QPLL +  
Sbjct: 1083 YRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLKIQNASQPLLDVDH 1139

Query: 972  SHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSL 1025
            +    N L     N  G     S + +K        Q  + + PEL      P S+ ++ 
Sbjct: 1140 TSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELCTVHPFPASLWRTA 1198

Query: 1026 YLLPSVMQRLESLMLASQLREEINC 1050
              LP ++ R+  L+LA  +R++++ 
Sbjct: 1199 VCLPCILYRINGLLLADDIRKQVSA 1223



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1667 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1726

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L  Y+  + F+P   W+ P
Sbjct: 1727 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1755



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG-----STTSVDA-LTPK 461
           +  LC +I+  +   A+V+   + ++    P L  L   Y T      +T   +A L  +
Sbjct: 433 SDTLCALIYCNQNHTARVLFELLAEIGRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHR 492

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   + 
Sbjct: 493 RQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAY 552

Query: 522 FILML 526
            ++++
Sbjct: 553 HVILV 557



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 52/209 (24%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI------------------------DADL 1230
            K+IADC EALIGAY +  G   AL  M WLG+                        +A+ 
Sbjct: 1844 KSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAEN 1903

Query: 1231 EVSLVDDCIT-RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             V++     T R+ L  + P   E         ++ E  +GY+F  +  L +A+THAS  
Sbjct: 1904 VVTVYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYT 1963

Query: 1282 EFY---CYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIV 1338
                  CYQ L          L   + +Y+ +           P   +P AL DL  ++V
Sbjct: 1964 PNRLTDCYQRL--------EFLGDAVLDYLIT-----RHLYEDPRQHSPGALTDLRSALV 2010

Query: 1339 GAVL---IDTKLNLDEVWRIFKPILSPIV 1364
               +   +  +    + +R   P L+ ++
Sbjct: 2011 NNTIFASLAVRHGFHKFFRHLSPGLNDVI 2039


>gi|170593727|ref|XP_001901615.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
 gi|158590559|gb|EDP29174.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
          Length = 904

 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 133/532 (25%), Positives = 226/532 (42%), Gaps = 120/532 (22%)

Query: 47  RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ ++ E A R  NTI    TG+GKT++A  +I +  +A+K+      +  L PT+ L
Sbjct: 221 RPYQQELVETACRGMNTIICAPTGSGKTVVAAHIILEHFRAMKAADKPSRVAMLVPTIPL 280

Query: 106 VHQQYDVIR--VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
           V QQ  ++   +   F V+   G++ VDE         +  + V V TPQI ++ LR   
Sbjct: 281 VEQQCIMLNRYLRKTFWVDGMSGSEPVDE---NGRAPNVLASHVTVFTPQIFINLLR--- 334

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN-KPKVFGMTASPVV---RKGVSSA 219
                              N     ++    H+ D  KP++ G+TAS  +   R  V +A
Sbjct: 335 -------------------NIRRDDLLMRMLHRFDGPKPQIVGLTASLPLGAGRASVDAA 375

Query: 220 MD------------------CEGQIS-----ELESTLDSQVFTIEDKTEMEVFVPSAKES 256
           +D                  C  +I      EL    ++++     K E  VF P+ + S
Sbjct: 376 LDIKRAHRPEYDSFSQSLEICMRKIELAIKPELGRIAENKILNF--KVEETVF-PAHRNS 432

Query: 257 CRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAK 316
            R+     F G  LK +L                      +  DDK   L+ QL      
Sbjct: 433 TRY---ESFVGG-LKNRL---------------------IELPDDK---LKHQL------ 458

Query: 317 ILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLAD 376
            +  L+ LG    Y    +CL  +L        +   S  C+   +E++   G    + +
Sbjct: 459 -IKMLEHLG----YYYRALCLSDLLPN------WYAYSYLCENMTKEIVQDAGDRTTIQN 507

Query: 377 ---KIFLDF------GFDYSKAVDLGYISTKLHE-LLQLFLSFGKSTQVLCIIFVERIIA 426
              K+F  F       F  + + +   I   LH  LL+ ++S   S     IIFV     
Sbjct: 508 QLAKLFEKFVKSDELNFKENDSGEEKEILKMLHTILLEQYVSDPASR---TIIFVTTRKL 564

Query: 427 AKVVERFVKKVPFL--THLTVAYLTGS--TTSVDALTPKVQKEVLESFRGGKVNLLFATD 482
           A+ +   +  V  +  T   V ++T S  +++++  T + Q+ V+E+F  G + +L AT 
Sbjct: 565 AQYLSHHLNAVKIVDRTSRAVGFITSSNRSSALNGQTTEEQRTVIENFNQGTLKVLVATS 624

Query: 483 VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR 534
           V EEG+ +  C+ +I+++   +  S IQ RGRAR  +S+ IL+   G+++++
Sbjct: 625 VAEEGLDISACNLIIKYNNTGSERSLIQRRGRARAKHSKSILLALDGSIEEK 676


>gi|425626948|gb|AFX89032.1| dicer 1 [Mayetiola destructor]
          Length = 2057

 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 157/402 (39%), Gaps = 111/402 (27%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L+ TY   HEG+LS  RS  V N 
Sbjct: 1515 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRSRQVSNL 1574

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP------------------------------G 1148
             L++LG  + L   +  + F+P   W+ P                               
Sbjct: 1575 NLYRLGRRKMLGERMIATKFEPHDNWLPPCYYVPKDLEKALIEAKIPACYWEDARLLDVK 1634

Query: 1149 QLSLRPVPCEC-----------GVDTLEVPLDGKFFTQDTKVVVGK--------PCDMGH 1189
            +L++  + CE              D LE   D K  + + + ++          PC + +
Sbjct: 1635 ELTVDEI-CEMLKKRIYDYEQDEKDALEYGNDAKNESTEYEEIINGPVINRDEFPCFIPY 1693

Query: 1190 RWMG-----SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDA--DLEVSLVDDCITR- 1241
              +       K+IADC EALIGA  + GG   AL  M WLGI      E+   ++ +   
Sbjct: 1694 NLVTQHSIPDKSIADCVEALIGANLIEGGPRGALLFMAWLGIRVLPSKEIPFNENSLENI 1753

Query: 1242 ---------------------ASLRSYVPR------------INEIKDIESKIGYEFTVK 1268
                                 AS +S +              +N     E  IGY F  +
Sbjct: 1754 PGSTKPFERDGKKYQIVYGYWASPKSPLLHFSANPYETLERFLNGYSVFEEHIGYHFNDR 1813

Query: 1269 FLLQEAITHASVQEFY---CYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMK 1325
              L +A+THAS  +     CYQ L          L   + +Y+ +           P   
Sbjct: 1814 SYLLQAMTHASYSQNRLTDCYQRL--------EFLGDAVLDYLIT-----RHLYEDPRQH 1860

Query: 1326 APKALGDLLESIVGAVL---IDTKLNLDEVWRIFKPILSPIV 1364
            +P AL DL  ++V   +   +  +    + +R   P L+ ++
Sbjct: 1861 SPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPSLNDVI 1902



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 13/131 (9%)

Query: 408 SFGKSTQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV 462
           ++      LC +IF + I  AK +  F+ ++      L +L+V Y TG   +   +  K 
Sbjct: 410 NYQNDPNALCGLIFCDSIFTAKALFSFINEMTKHDSDLEYLSVQY-TGDRIADPVMESKQ 468

Query: 463 -------QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
                  Q+EVL+ FR    NLL  T V+EEG+ +P C+ V+R++LP T  SY+Q +GRA
Sbjct: 469 FENEHRKQEEVLKRFRMHSCNLLIGTSVLEEGIELPKCNLVVRWNLPTTYRSYVQCKGRA 528

Query: 516 RQHNSQFILML 526
           R   +  I+M+
Sbjct: 529 RAQKAHHIIMV 539



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 9/126 (7%)

Query: 1316 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT--PDKLELPP 1373
            E  D    ++ PKALGD+ ES+ GA+ +D+ ++LD VW+IF  ++ P +    D +   P
Sbjct: 1926 EECDEAEDVEVPKALGDIFESVAGAIFLDSNMSLDMVWKIFSNMMKPEIDQFSDSVPKSP 1985

Query: 1374 LRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQ 1431
            +REL+EL      F K      G  V   +     DV   G   G  R+ + AK  AA  
Sbjct: 1986 IRELLELEPETAKFGKPEKLADGRRVRVTV-----DVFGKGTYRGIGRNYRIAKCTAAKC 2040

Query: 1432 LLKKLE 1437
             L++L+
Sbjct: 2041 ALRQLK 2046



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 18/136 (13%)

Query: 581 VTTDSSVNLIHRYCEMLPSDKYYTPKPIFK----YKSAEEAYECELTLPSNAPF-QTIVG 635
           V+  +++ L+++YC  LPSD +    PI++     +     Y+  + LP N+P  Q I G
Sbjct: 663 VSLTNAILLVNKYCAKLPSDTFTKLTPIWRCIKTKRGDRTYYQYTVRLPINSPVKQDIYG 722

Query: 636 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP------SVEEPSENNLISKK------N 683
               ++ L+++   L  C+ LH  G L+D+L P         EP  NN   +K      N
Sbjct: 723 IPMPSRVLARRFAGLICCKVLHLSGELDDNLQPIGKEGFRASEPDWNNFELEKEDADIVN 782

Query: 684 ESL-PGAGTTKRKELH 698
           E+L P  GTT+R++ +
Sbjct: 783 ENLDPRPGTTRRRQYY 798



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 6/138 (4%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN---GFKKLIIFLA 100
           F PR +Q+++   A  +N I  L   + K  IA+ LI + +  ++ N     KK+ +FLA
Sbjct: 15  FTPRDFQVELLAAAIEQNIIICLGHNSSKEFIALKLILEKSHELRQNVNGCSKKITLFLA 74

Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
            T       Y+++   TD +V      +      S  W + I    V++++    + AL+
Sbjct: 75  NTTTGSESMYNLLFHLTDLKV---INIRNNVPTKSAEWMEIICDYHVIILSASGCVYALQ 131

Query: 161 KAFLSLDIVCFIVIDECH 178
           + +L L  V  I+IDECH
Sbjct: 132 EKWLDLKHVNLIIIDECH 149



 Score = 45.4 bits (106), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 14/152 (9%)

Query: 907  LKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHP 962
             +D VV+  +  +     + + EI +  S ES F G +     TF  Y+  KY I + + 
Sbjct: 917  FRDAVVMPWYRNQDQPQYFYVAEICDYLSPESSFPGES---YATFKEYYFRKYNITIQNC 973

Query: 963  GQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVRVD 1016
             QPLL +  +    N L     N  G     S + +K        Q  + + PEL     
Sbjct: 974  QQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKKAKRENLEQKQI-LVPELCTIHS 1032

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
             P S+ +    LP V  R+ +L+LA ++R E+
Sbjct: 1033 FPASLWRIAVCLPCVFYRINALLLADEIRIEV 1064


>gi|89114036|gb|ABD61609.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 129/564 (22%), Positives = 227/564 (40%), Gaps = 98/564 (17%)

Query: 530  NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-TYVKTKSYIVESTGASVTTDSSVN 588
             + Q  ++  ++ S+ + T+       EA    AC    + K +++  TGASV   S++ 
Sbjct: 713  QMAQYREIEQMLLSKCANTEPPEQEQSEAERFSACLAAYRPKPHLL--TGASVDLGSAIA 770

Query: 589  LIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ-TIVGPTSRNKNL 643
            L+++YC  LPSD +     +++   +E A    ++  L LP N+P +  IVG     + L
Sbjct: 771  LVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLPMPTQTL 830

Query: 644  SKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSENNLISKKNESLPG 688
            +++L  L+AC +LH++G L+D L P       ++E        EP +  ++   +E  PG
Sbjct: 831  ARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLSDEPRPG 890

Query: 689  AGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDND 748
              T +R+  +          R        L+  +    C I  E  +    +   E D  
Sbjct: 891  T-TKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPPE-DAQ 948

Query: 749  VGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAKCF----QELFFNGLFGKLFVKSK 803
             G   L    + K    ++ + SG+V +   +++K +      Q +  NG     F    
Sbjct: 949  QGFGILTTKRIPKLSAFSIFTRSGEVKVSL-ELAKERVILTSEQIVCINGFLNYTF---- 1003

Query: 804  SSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKS 863
                        TN L    ++ L  P    N                C  +V  +K  +
Sbjct: 1004 ------------TNVLRLQKFLMLFDPDSTEN----------------CVFIVPTVKAPA 1035

Query: 864  --------FLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAI 915
                    FL   Q N   GN+ P R  P K                DA+  +D VV+  
Sbjct: 1036 GGKHIDWQFLELIQAN---GNTMP-RAVPDK---------ERQAQPFDAQRFQDAVVMPW 1082

Query: 916  HTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQ 971
            +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ + +  QPLL +  
Sbjct: 1083 YRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLKIQNASQPLLDVDH 1139

Query: 972  SHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSL 1025
            +    N L     N  G     S + +K        Q  + + PEL      P S+ ++ 
Sbjct: 1140 TSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELCTVHPFPASLWRTA 1198

Query: 1026 YLLPSVMQRLESLMLASQLREEIN 1049
              LP ++ R+  L+LA  +R++++
Sbjct: 1199 VCLPCILYRINGLLLADDIRKQVS 1222



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1667 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1726

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L  Y+  + F+P   W+ P
Sbjct: 1727 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1755



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG-----STTSVDA-LTPK 461
           +  LC +I+  +   A+V+   + ++    P L  L   Y T      +T   +A L  +
Sbjct: 433 SDTLCALIYCNQNHTARVLFELLAEIGRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHR 492

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   + 
Sbjct: 493 RQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAY 552

Query: 522 FILML 526
            ++++
Sbjct: 553 HVILV 557



 Score = 49.3 bits (116), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 52/209 (24%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI------------------------DADL 1230
            K+IADC EALIGAY +  G   AL  M WLG+                        +A+ 
Sbjct: 1844 KSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEXRIPGSTKPNAEN 1903

Query: 1231 EVSLVDDCIT-RASLRSYVPR--------INEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             V++     T R+ L  + P         ++  ++ E  +GY+F  +  L +A+THAS  
Sbjct: 1904 VVTVYGAWPTPRSPLLHFAPNATXELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYT 1963

Query: 1282 EFY---CYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIV 1338
                  CYQ L          L   + +Y+ +           P   +P AL DL  ++V
Sbjct: 1964 PNRLTDCYQRL--------EFLGDAVLDYLIT-----RHLYEDPRQHSPGALTDLRSALV 2010

Query: 1339 GAVL---IDTKLNLDEVWRIFKPILSPIV 1364
               +   +  +    + +R   P L+ ++
Sbjct: 2011 NNTIFASLAVRHGFHKFFRHLSPGLNDVI 2039


>gi|89114042|gb|ABD61612.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 129/565 (22%), Positives = 227/565 (40%), Gaps = 98/565 (17%)

Query: 530  NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-TYVKTKSYIVESTGASVTTDSSVN 588
             + Q  ++  ++ S+ + T+       EA    AC    + K +++  TGASV   S++ 
Sbjct: 713  QMAQYREIEQMLLSKCANTEPPEQEQSEAERFSACLAAYRPKPHLL--TGASVDLGSAIA 770

Query: 589  LIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ-TIVGPTSRNKNL 643
            L+++YC  LPSD +     +++   +E A    ++  L LP N+P +  IVG     + L
Sbjct: 771  LVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLPMPTQTL 830

Query: 644  SKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSENNLISKKNESLPG 688
            +++L  L+AC +LH++G L+D L P       ++E        EP +  ++   +E  PG
Sbjct: 831  ARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLSDEPRPG 890

Query: 689  AGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDND 748
              T +R+  +          R        L+  +    C I  E  +    +   E D  
Sbjct: 891  T-TKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPPE-DAQ 948

Query: 749  VGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAKCF----QELFFNGLFGKLFVKSK 803
             G   L    + K    ++ + SG+V +   +++K +      Q +  NG     F    
Sbjct: 949  QGFGILTTKRIPKLSAFSIFTRSGEVKVSL-ELAKERVILTSEQIVCINGFLNYTF---- 1003

Query: 804  SSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKS 863
                        TN L    ++ L  P    N                C  +V  +K  +
Sbjct: 1004 ------------TNVLRLQKFLMLFDPDSTEN----------------CVFIVPTVKAPA 1035

Query: 864  --------FLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAI 915
                    FL   Q N   GN+ P R  P K                DA+  +D VV+  
Sbjct: 1036 GGKHIDWQFLELIQAN---GNTMP-RAVPDK---------ERQAQPFDAQRFQDAVVMPW 1082

Query: 916  HTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQ 971
            +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ + +  QPLL +  
Sbjct: 1083 YRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLKIQNASQPLLDVDH 1139

Query: 972  SHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSL 1025
            +    N L     N  G     S + +K        Q  + + PEL      P S+ ++ 
Sbjct: 1140 TSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELCTVHPFPASLWRTA 1198

Query: 1026 YLLPSVMQRLESLMLASQLREEINC 1050
              LP ++ R+  L+LA  +R++++ 
Sbjct: 1199 VCLPCILYRINGLLLADDIRKQVSA 1223



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1667 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1726

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L  Y+  + F+P   W+ P
Sbjct: 1727 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1755



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG-----STTSVDA-LTPK 461
           +  LC +I+  +   A+V+   + ++    P L  L   Y T      +T   +A L  +
Sbjct: 433 SDTLCALIYCNQNHTARVLFELLAEIGRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHR 492

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   + 
Sbjct: 493 RQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAY 552

Query: 522 FILML 526
            ++++
Sbjct: 553 HVILV 557



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 52/209 (24%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI------------------------DADL 1230
            K+IADC EALIGAY +  G   AL  M WLG+                        +A+ 
Sbjct: 1844 KSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAEN 1903

Query: 1231 EVSLVDDCIT-RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             V++     T R+ L  + P   E         ++ E  +GY+F  +  L +A+THAS  
Sbjct: 1904 VVTVYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYT 1963

Query: 1282 EFY---CYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIV 1338
                  CYQ L          L   + +Y+ +           P   +P AL DL  ++V
Sbjct: 1964 PNRLTDCYQRL--------EFLGDAVLDYLIT-----RHLYEDPRQHSPGALTDLRSALV 2010

Query: 1339 GAVL---IDTKLNLDEVWRIFKPILSPIV 1364
               +   +  +    + +R   P L+ ++
Sbjct: 2011 NNTIFASLAVRHGFHKFFRHLSPGLNDVI 2039


>gi|89114048|gb|ABD61615.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 129/565 (22%), Positives = 227/565 (40%), Gaps = 98/565 (17%)

Query: 530  NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-TYVKTKSYIVESTGASVTTDSSVN 588
             + Q  ++  ++ S+ + T+       EA    AC    + K +++  TGASV   S++ 
Sbjct: 713  QMAQYREIEQMLLSKCANTEPPEQEQSEAERFSACLAAYRPKPHLL--TGASVDLGSAIA 770

Query: 589  LIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ-TIVGPTSRNKNL 643
            L+++YC  LPSD +     +++   +E A    ++  L LP N+P +  IVG     + L
Sbjct: 771  LVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLPMPTQTL 830

Query: 644  SKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSENNLISKKNESLPG 688
            +++L  L+AC +LH++G L+D L P       ++E        EP +  ++   +E  PG
Sbjct: 831  ARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLSDEPRPG 890

Query: 689  AGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDND 748
              T +R+  +          R        L+  +    C I  E  +    +   E D  
Sbjct: 891  T-TKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPPE-DAQ 948

Query: 749  VGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAKCF----QELFFNGLFGKLFVKSK 803
             G   L    + K    ++ + SG+V +   +++K +      Q +  NG     F    
Sbjct: 949  QGFGILTTKRIPKLSAFSIFTRSGEVKVSL-ELAKERVILTSEQIVCINGFLNYTF---- 1003

Query: 804  SSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKS 863
                        TN L    ++ L  P    N                C  +V  +K  +
Sbjct: 1004 ------------TNVLRLQKFLMLFDPDSTEN----------------CVFIVPTVKAPA 1035

Query: 864  --------FLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAI 915
                    FL   Q N   GN+ P R  P K                DA+  +D VV+  
Sbjct: 1036 GGKHIDWQFLELIQAN---GNTMP-RAVPDK---------ERKAQPFDAQRFQDAVVMPW 1082

Query: 916  HTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQ 971
            +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ + +  QPLL +  
Sbjct: 1083 YRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLKIQNASQPLLDVDH 1139

Query: 972  SHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSL 1025
            +    N L     N  G     S + +K        Q  + + PEL      P S+ ++ 
Sbjct: 1140 TSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELCTVHPFPASLWRTA 1198

Query: 1026 YLLPSVMQRLESLMLASQLREEINC 1050
              LP ++ R+  L+LA  +R++++ 
Sbjct: 1199 VCLPCILYRINGLLLADDIRKQVSA 1223



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1667 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1726

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L  Y+  + F+P   W+ P
Sbjct: 1727 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1755



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG-----STTSVDA-LTPK 461
           +  LC +I+  +   A+V+   + ++    P L  L   Y T      +T   +A L  +
Sbjct: 433 SDTLCALIYCNQNHTARVLFELLAEIGRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHR 492

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   + 
Sbjct: 493 RQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAY 552

Query: 522 FILML 526
            ++++
Sbjct: 553 HVILV 557



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 52/209 (24%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI------------------------DADL 1230
            K+IADC EALIGAY +  G   AL  M WLG+                        +A+ 
Sbjct: 1844 KSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRHLDGGNQEQRIPGSTKPNAEN 1903

Query: 1231 EVSLVDDCIT-RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             V++     T R+ L  + P   E         ++ E  +GY+F  +  L +A+THAS  
Sbjct: 1904 VVTVYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYT 1963

Query: 1282 EFY---CYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIV 1338
                  CYQ L          L   + +Y+ +           P   +P AL DL  ++V
Sbjct: 1964 PNRLTDCYQRL--------EFLGDAVLDYLIT-----RHLYEDPRQHSPGALTDLRSALV 2010

Query: 1339 GAVL---IDTKLNLDEVWRIFKPILSPIV 1364
               +   +  +    + +R   P L+ ++
Sbjct: 2011 NNTIFASLAVRHGFHKFFRHLSPGLNDVI 2039


>gi|89114044|gb|ABD61613.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 129/565 (22%), Positives = 227/565 (40%), Gaps = 98/565 (17%)

Query: 530  NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-TYVKTKSYIVESTGASVTTDSSVN 588
             + Q  ++  ++ S+ + T+       EA    AC    + K +++  TGASV   S++ 
Sbjct: 713  QMAQYREIEQMLLSKCANTEPPEQEQSEAERFSACLAAYRPKPHLL--TGASVDLGSAIA 770

Query: 589  LIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ-TIVGPTSRNKNL 643
            L+++YC  LPSD +     +++   +E A    ++  L LP N+P +  IVG     + L
Sbjct: 771  LVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLPMPTQTL 830

Query: 644  SKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSENNLISKKNESLPG 688
            +++L  L+AC +LH++G L+D L P       ++E        EP +  ++   +E  PG
Sbjct: 831  ARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLSDEPRPG 890

Query: 689  AGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDND 748
              T +R+  +          R        L+  +    C I  E  +    +   E D  
Sbjct: 891  T-TKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPPE-DAQ 948

Query: 749  VGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAKCF----QELFFNGLFGKLFVKSK 803
             G   L    + K    ++ + SG+V +   +++K +      Q +  NG     F    
Sbjct: 949  QGFGILTTKRIPKLSAFSIFTRSGEVKVSL-ELAKERVILTSEQIVCINGFLNYTF---- 1003

Query: 804  SSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKS 863
                        TN L    ++ L  P    N                C  +V  +K  +
Sbjct: 1004 ------------TNVLRLQKFLMLFDPDSTEN----------------CVFIVPTVKAPA 1035

Query: 864  --------FLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAI 915
                    FL   Q N   GN+ P R  P K                DA+  +D VV+  
Sbjct: 1036 GGKHIDWQFLELIQAN---GNTMP-RAVPDK---------ERQAQPFDAQRFQDAVVMPW 1082

Query: 916  HTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQ 971
            +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ + +  QPLL +  
Sbjct: 1083 YRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLKIQNASQPLLDVDH 1139

Query: 972  SHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSL 1025
            +    N L     N  G     S + +K        Q  + + PEL      P S+ ++ 
Sbjct: 1140 TSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELCTVHPFPASLWRTA 1198

Query: 1026 YLLPSVMQRLESLMLASQLREEINC 1050
              LP ++ R+  L+LA  +R++++ 
Sbjct: 1199 VCLPCILYRINGLLLADDIRKQVSA 1223



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1667 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1726

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L  Y+  + F+P   W+ P
Sbjct: 1727 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1755



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG-----STTSVDA-LTPK 461
           +  LC +I+  +   A+V+   + ++    P L  L   Y T      +T   +A L  +
Sbjct: 433 SDTLCALIYCNQNHTARVLFELLAEIGRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHR 492

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   + 
Sbjct: 493 RQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAY 552

Query: 522 FILML 526
            ++++
Sbjct: 553 HVILV 557



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 52/209 (24%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI------------------------DADL 1230
            K+IADC EALIGAY +  G   AL  M WLG+                        +A+ 
Sbjct: 1844 KSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEKRIPGSTKPNAEN 1903

Query: 1231 EVSLVDDCIT-RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             V++     T R+ L  + P   E         ++ E  +GY+F  +  L +A+THAS  
Sbjct: 1904 VVTVYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYT 1963

Query: 1282 EFY---CYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIV 1338
                  CYQ L          L   + +Y+ +           P   +P AL DL  ++V
Sbjct: 1964 PNRLTDCYQRL--------EFLGDAVLDYLIT-----RHLYEDPRQHSPGALTDLRSALV 2010

Query: 1339 GAVL---IDTKLNLDEVWRIFKPILSPIV 1364
               +   +  +    + +R   P L+ ++
Sbjct: 2011 NNTIFASLAVRHGFHKFFRHLSPGLNDVI 2039


>gi|385802402|ref|YP_005838802.1| ATP-dependent RNA helicase/nuclease Hef [Haloquadratum walsbyi C23]
 gi|339727894|emb|CCC39004.1| ATP-dependent RNA helicase/nuclease Hef [Haloquadratum walsbyi C23]
          Length = 855

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 26/173 (15%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQ+++   A++ +T+  L TG GKT +++++      A + N      +FLAPT  LV
Sbjct: 23  RLYQIQLAGTARKTDTLVCLPTGLGKTTVSLLVT-----ATRLNSIGGTALFLAPTKPLV 77

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKND---------VLVMTPQILLD 157
            Q       H +F    Y  A  + + D   +  E++ +D         V++ TPQ++ +
Sbjct: 78  RQ-------HVEF----YRNALTIPDEDIVVFTGEVSPDDRAALWDDAQVVIATPQVIEN 126

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
            L    +SL+ V  +  DECH ATG + Y  I  E YH     P+V GM+ASP
Sbjct: 127 DLIGNRISLNSVTHLTFDECHRATGEYAYVYIA-ERYHDDATNPRVTGMSASP 178



 Score = 48.9 bits (115), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
            IIF E    A+ +  F+     +        TG +   + +T + Q++ L +FR G+  
Sbjct: 374 VIIFTESRDTAEALTEFLSASFDVQRFVGQNDTGRS---EGMTQREQQKALTAFRSGEFE 430

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILML 526
           +L +T V EEG+ VP    V+ F+   T    IQ +GR  RQ   + +++L
Sbjct: 431 VLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRKGRTGRQTEGRVVVLL 481


>gi|89114050|gb|ABD61616.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 129/565 (22%), Positives = 227/565 (40%), Gaps = 98/565 (17%)

Query: 530  NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-TYVKTKSYIVESTGASVTTDSSVN 588
             + Q  ++  ++ S+ + T+       EA    AC    + K +++  TGASV   S++ 
Sbjct: 713  QMAQYREIEQMLLSKCANTEPPEQEQSEAERFSACLAAYRPKPHLL--TGASVDLGSAIA 770

Query: 589  LIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ-TIVGPTSRNKNL 643
            L+++YC  LPSD +     +++   +E A    ++  L LP N+P +  IVG     + L
Sbjct: 771  LVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLPMPTQTL 830

Query: 644  SKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSENNLISKKNESLPG 688
            +++L  L+AC +LH++G L+D L P       ++E        EP +  ++   +E  PG
Sbjct: 831  ARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLSDEPRPG 890

Query: 689  AGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDND 748
              T +R+  +          R        L+  +    C I  E  +    +   E D  
Sbjct: 891  T-TKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPPE-DAQ 948

Query: 749  VGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAKCF----QELFFNGLFGKLFVKSK 803
             G   L    + K    ++ + SG+V +   +++K +      Q +  NG     F    
Sbjct: 949  QGFGILTTKRIPKLSAFSIFTRSGEVKVSL-ELAKERVILTSEQIVCINGFLNYTF---- 1003

Query: 804  SSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKS 863
                        TN L    ++ L  P    N                C  +V  +K  +
Sbjct: 1004 ------------TNVLRLQKFLMLFDPDSTEN----------------CVFIVPTVKAPA 1035

Query: 864  --------FLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAI 915
                    FL   Q N   GN+ P R  P K                DA+  +D VV+  
Sbjct: 1036 GGKHIDWQFLELIQAN---GNTMP-RAVPDK---------ERQAQPFDAQRFQDAVVMPW 1082

Query: 916  HTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQ 971
            +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ + +  QPLL +  
Sbjct: 1083 YRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLKIQNASQPLLDVDH 1139

Query: 972  SHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSL 1025
            +    N L     N  G     S + +K        Q  + + PEL      P S+ ++ 
Sbjct: 1140 TSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELCTVHPFPASLWRTA 1198

Query: 1026 YLLPSVMQRLESLMLASQLREEINC 1050
              LP ++ R+  L+LA  +R++++ 
Sbjct: 1199 VCLPCILYRINGLLLADDIRKQVSA 1223



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1667 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1726

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L  Y+  + F+P   W+ P
Sbjct: 1727 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1755



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG-----STTSVDA-LTPK 461
           +  LC +I+  +   A+V+   + ++    P L  L   Y T      +T   +A L  +
Sbjct: 433 SDTLCALIYCNQNHTARVLFELLAEIGRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHR 492

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   + 
Sbjct: 493 RQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAY 552

Query: 522 FILML 526
            ++++
Sbjct: 553 HVILV 557



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 52/209 (24%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI------------------------DADL 1230
            K+IADC EALIGAY +  G   AL  M WLG+                        +A+ 
Sbjct: 1844 KSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAEN 1903

Query: 1231 EVSLVDDCIT-RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             V++     T R+ L  + P   E         ++ E  +GY+F  +  L +A+THAS  
Sbjct: 1904 VVTVYGAWPTSRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYT 1963

Query: 1282 EFY---CYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIV 1338
                  CYQ L          L   + +Y+ +           P   +P AL DL  ++V
Sbjct: 1964 PNRLTDCYQRL--------EFLGDAVLDYLIT-----RHLYEDPRQHSPGALTDLRSALV 2010

Query: 1339 GAVL---IDTKLNLDEVWRIFKPILSPIV 1364
               +   +  +    + +R   P L+ ++
Sbjct: 2011 NNTIFASLAVRHGFHKFFRHLSPGLNDVI 2039


>gi|62734194|gb|AAX96303.1| Similar to probable ATP-dependent RNA helicase - fission yeast
           (Schizosaccharomyces pombe) [Oryza sativa Japonica
           Group]
 gi|77548994|gb|ABA91791.1| Type III restriction enzyme, res subunit family protein, expressed
           [Oryza sativa Japonica Group]
          Length = 1488

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 127/518 (24%), Positives = 214/518 (41%), Gaps = 51/518 (9%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ K  E A   NT+  L TG GKT IA +++ +  +          I+F APT  LV
Sbjct: 249 REYQKKFVEKALFTNTLVALPTGLGKTFIAAVVMYNYFRWFPEGK----IVFTAPTRPLV 304

Query: 107 HQQYDVIRVHTDFEVEEYYGAKG-VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
            QQ +          E     KG +      C+ K      V  +TPQ+L + ++     
Sbjct: 305 TQQIEACHNTVGIPQEWTIDLKGNLSPSKRSCFWK---SKRVFFVTPQVLQNDIQSGICM 361

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKP-KVFGMTASPVVRKG--------- 215
           ++ +  +VIDE H A+ N+ Y  +++E   ++   P ++  +TA+P  ++          
Sbjct: 362 VNQLVCLVIDEAHRASRNYAYCVVVREL--EAARVPLRILALTATPGSKQPAIQNVINNL 419

Query: 216 -VSSAMDCEGQISELESTLDSQ-VFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273
            +S  + C+    E+   +  + V  +E   + + F+P   E+ +  D+          K
Sbjct: 420 RISELVHCDESDPEVSRYIQRRTVEPLEVCMDSDKFIPVGDEAEQVNDKLLDVIRPHLVK 479

Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
           L  +        S     QL   KD  D+       L+D   +I      L L+  Y  +
Sbjct: 480 LRSARVIDHRDASNWSPHQLRMLKDKFDQAPPPNIPLAD-KKEIGISFQALTLL--YGIM 536

Query: 334 KICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393
           K+ L   +KA  +       S++ KY  E    V+       +  FL+        +  G
Sbjct: 537 KMLLSYGIKAAHQ-------SIEAKY-KEGSWKVL-----TRNNTFLEVKKTMENFLSQG 583

Query: 394 YISTKLHELLQLFLS-FGKSTQ-VLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS 451
            +S K+  L+++ L  F K+ +    IIF       K +   ++ +        A++  S
Sbjct: 584 ILSPKVRTLVEVLLDHFRKNPKDSRVIIFAHYRECVKEILCSLRNIDGELVRPAAFIGQS 643

Query: 452 TT--SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
           +T   +   T K+Q+ +L  FR G+ N+L AT + EEG+ +     V+ FD   +    I
Sbjct: 644 STGDQLKGQTQKMQQAILHKFRSGEYNILVATSIGEEGLDIMEVDLVVCFDANISALRMI 703

Query: 510 QSRGRARQHNSQF--ILMLE-------RGNLKQRNKLF 538
           Q  GR  + N     IL LE       +GN K   KL 
Sbjct: 704 QRMGRTGRKNEGRVDILFLEMKGYLSKQGNTKTMKKLL 741


>gi|89114046|gb|ABD61614.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 129/565 (22%), Positives = 227/565 (40%), Gaps = 98/565 (17%)

Query: 530  NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-TYVKTKSYIVESTGASVTTDSSVN 588
             + Q  ++  ++ S+ + T+       EA    AC    + K +++  TGASV   S++ 
Sbjct: 713  QMAQYREIEQMLLSKCANTEPPEQEQSEAERFSACLAAYRPKPHLL--TGASVDLGSAIA 770

Query: 589  LIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ-TIVGPTSRNKNL 643
            L+++YC  LPSD +     +++   +E A    ++  L LP N+P +  IVG     + L
Sbjct: 771  LVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLPMPTQTL 830

Query: 644  SKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSENNLISKKNESLPG 688
            +++L  L+AC +LH++G L+D L P       ++E        EP +  ++   +E  PG
Sbjct: 831  ARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLSDEPRPG 890

Query: 689  AGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDND 748
              T +R+  +          R        L+  +    C I  E  +    +   E D  
Sbjct: 891  T-TKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPPE-DAQ 948

Query: 749  VGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAKCF----QELFFNGLFGKLFVKSK 803
             G   L    + K    ++ + SG+V +   +++K +      Q +  NG     F    
Sbjct: 949  QGFGILTTKRIPKLSAFSIFTRSGEVKVSL-ELAKERVILTSEQIVCINGFLNYTF---- 1003

Query: 804  SSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKS 863
                        TN L    ++ L  P    N                C  +V  +K  +
Sbjct: 1004 ------------TNVLRLQKFLMLFDPDSTEN----------------CVFIVPTVKAPA 1035

Query: 864  --------FLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAI 915
                    FL   Q N   GN+ P R  P K                DA+  +D VV+  
Sbjct: 1036 GGKHIDWQFLELIQAN---GNTMP-RAVPDK---------ERKAQPFDAQRFQDAVVMPW 1082

Query: 916  HTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQ 971
            +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ + +  QPLL +  
Sbjct: 1083 YRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLKIQNASQPLLDVDH 1139

Query: 972  SHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSL 1025
            +    N L     N  G     S + +K        Q  + + PEL      P S+ ++ 
Sbjct: 1140 TSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELCTVHPFPASLWRTA 1198

Query: 1026 YLLPSVMQRLESLMLASQLREEINC 1050
              LP ++ R+  L+LA  +R++++ 
Sbjct: 1199 VCLPCILYRINGLLLADDIRKQVSA 1223



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1667 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1726

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L  Y+  + F+P   W+ P
Sbjct: 1727 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1755



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG-----STTSVDA-LTPK 461
           +  LC +I+  +   A+V+   + ++    P L  L   Y T      +T   +A L  +
Sbjct: 433 SDTLCALIYCNQNHTARVLFELLAEIGRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHR 492

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   + 
Sbjct: 493 RQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAY 552

Query: 522 FILML 526
            ++++
Sbjct: 553 HVILV 557



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 52/209 (24%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI------------------------DADL 1230
            K+IADC EALIGAY +  G   AL  M WLG+                        +A+ 
Sbjct: 1844 KSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAEN 1903

Query: 1231 EVSLVDDCIT-RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             V++     T R+ L  + P   E         ++ E  +GY+F  +  L +A+THAS  
Sbjct: 1904 VVTVYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYT 1963

Query: 1282 EFY---CYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIV 1338
                  CYQ L          L   + +Y+ +           P   +P AL DL  ++V
Sbjct: 1964 PNRLTDCYQRL--------EFLGDAVLDYLIT-----RHLYEDPRQHSPGALTDLRSALV 2010

Query: 1339 GAVL---IDTKLNLDEVWRIFKPILSPIV 1364
               +   +  +    + +R   P L+ ++
Sbjct: 2011 NNTIFASLAVRHGFHKFFRHLSPGLNDVI 2039


>gi|162312400|ref|NP_593348.2| ATP-dependent 3' to 5' DNA helicase [Schizosaccharomyces pombe
           972h-]
 gi|121919048|sp|Q9UT23.2|MFH1_SCHPO RecName: Full=ATP-dependent DNA helicase mfh1; AltName: Full=FancM
           homolog protein 1
 gi|85663622|emb|CAB57423.2| ATP-dependent 3' to 5' DNA helicase, FANCM ortholog Fml1
           [Schizosaccharomyces pombe]
          Length = 834

 Score = 87.8 bits (216), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 126/522 (24%), Positives = 220/522 (42%), Gaps = 83/522 (15%)

Query: 42  INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
           IN   R YQ  + + A   N +  L TG GKT IA +++ +  +       K  I+F+AP
Sbjct: 69  INVSFRDYQFNIVQKALFENVLVALPTGLGKTFIAAVVMMNYLRWFP----KSYIVFMAP 124

Query: 102 TVHLVHQQYDVIRVHTDF---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158
           T  LV QQ +     T     +  E  G   V   + Q +Q      +V  +TPQ +L+ 
Sbjct: 125 TKPLVTQQMEACYKITGIPKSQTAELSGHVPVTTRN-QYYQSR----NVFFVTPQTILND 179

Query: 159 LRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSS 218
           ++        +  +VIDE H +TGN+ Y +++      S+   ++  ++A+P        
Sbjct: 180 IKHGICDRTRISCLVIDEAHRSTGNYAYVEVV-HLLSLSNKNFRILALSATP-------- 230

Query: 219 AMDCEGQISELESTLDS-QVFTIEDKTEMEVFVPSAKESCRFYDQSK---FCGSDLKGKL 274
                 ++  +++ +DS  +  IE +TE  + +         Y Q K   F   DL  ++
Sbjct: 231 ----GNKLEAIQNVIDSLHISRIEIRTENSIDISQ-------YVQKKEVDFFPVDLSAEI 279

Query: 275 EVSWSKFDASLS------------KLQGSQ-LNCYKDMDDKHKTLRKQLSDYHAK----I 317
                +F + L             ++Q ++ +  +  +  K   L     ++ A     I
Sbjct: 280 TDIRDRFSSILEPMLQKLNKGNYYRIQNAKDITSFTVVQAKQAFLAMSGQNFPANQKWDI 339

Query: 318 LYCLDELGLICAY-------EAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGS 370
           L   D L    AY         ++   +K+ + +EEC + R S  + +    E      +
Sbjct: 340 LNTFDALATF-AYPLNLLLNHGIRPFYQKLREVEEECFVGR-SGYKKRIINHE------N 391

Query: 371 ALPLADKI---FLDFGF-DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIA 426
             PL D I     D  F  + K   L  I T+  E  Q      K T+++  IFVE   +
Sbjct: 392 YRPLMDDIEILLRDQSFVGHPKLEHLERIVTEYFEKEQ-----TKDTRIM--IFVEIRSS 444

Query: 427 AKVVERFVKKVPFLTHLTVAYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVI 484
           A+ + RF+ K  F  ++  A   G +    A  ++ K+Q E ++ F+ G+VN L AT + 
Sbjct: 445 AEEILRFLGK--FYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIG 502

Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
           EEG+ +     +I +D   +    +Q  GR  +    +I ML
Sbjct: 503 EEGLDIGEVDMIICYDASASPIRMLQRMGRTGRKRKGYIYML 544


>gi|89114040|gb|ABD61611.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 129/565 (22%), Positives = 227/565 (40%), Gaps = 98/565 (17%)

Query: 530  NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-TYVKTKSYIVESTGASVTTDSSVN 588
             + Q  ++  ++ S+ + T+       EA    AC    + K +++  TGASV   S++ 
Sbjct: 713  QMAQYREIEQMLLSKCANTEPPEQEQSEAERFSACLAAYRPKPHLL--TGASVDLGSAIA 770

Query: 589  LIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ-TIVGPTSRNKNL 643
            L+++YC  LPSD +     +++   +E A    ++  L LP N+P +  IVG     + L
Sbjct: 771  LVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLPMPTQTL 830

Query: 644  SKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSENNLISKKNESLPG 688
            +++L  L+AC +LH++G L+D L P       ++E        EP +  ++   +E  PG
Sbjct: 831  ARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLSDEPRPG 890

Query: 689  AGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDND 748
              T +R+  +          R        L+  +    C I  E  +    +   E D  
Sbjct: 891  T-TKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPPE-DAQ 948

Query: 749  VGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAKCF----QELFFNGLFGKLFVKSK 803
             G   L    + K    ++ + SG+V +   +++K +      Q +  NG     F    
Sbjct: 949  QGFGILTTKRIPKLSAFSIFTRSGEVKVSL-ELAKERVILTSEQIVCINGFLNYTF---- 1003

Query: 804  SSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKS 863
                        TN L    ++ L  P    N                C  +V  +K  +
Sbjct: 1004 ------------TNVLRLQKFLMLFDPDSTEN----------------CVFIVPTVKAPA 1035

Query: 864  --------FLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAI 915
                    FL   Q N   GN+ P R  P K                DA+  +D VV+  
Sbjct: 1036 GGKHIDWQFLELIQAN---GNTMP-RAVPDK---------ERQAQPFDAQRFQDAVVMPW 1082

Query: 916  HTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQ 971
            +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ + +  QPLL +  
Sbjct: 1083 YRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLKIQNASQPLLDVDH 1139

Query: 972  SHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSL 1025
            +    N L     N  G     S + +K        Q  + + PEL      P S+ ++ 
Sbjct: 1140 TSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELCTVHPFPASLWRTA 1198

Query: 1026 YLLPSVMQRLESLMLASQLREEINC 1050
              LP ++ R+  L+LA  +R++++ 
Sbjct: 1199 VCLPCILYRINGLLLADDIRKQVSA 1223



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1667 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1726

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L  Y+  + F+P   W+ P
Sbjct: 1727 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1755



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 11/126 (8%)

Query: 412 STQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG-----STTSVDA-LTP 460
           S+  LC +I+  +   A+V+   + ++    P L  L   Y T      +T   +A L  
Sbjct: 432 SSDTLCALIYCNQNHTARVLFELLAEIGRRDPDLKFLRCQYTTDRVADPTTEPKEAELEH 491

Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
           + Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   +
Sbjct: 492 RRQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPA 551

Query: 521 QFILML 526
             ++++
Sbjct: 552 YHVILV 557



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 52/209 (24%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI------------------------DADL 1230
            K+IADC EALIGAY +  G   AL  M WLG+                        +A+ 
Sbjct: 1844 KSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAEN 1903

Query: 1231 EVSLVDDCIT-RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             V++     T R+ L  + P   E         ++ E  +GY+F  +  L +A+THAS  
Sbjct: 1904 VVTVYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYT 1963

Query: 1282 EFY---CYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIV 1338
                  CYQ L          L   + +Y+ +           P   +P AL DL  ++V
Sbjct: 1964 PNRLTDCYQRL--------EFLGDAVLDYLIT-----RHLYEDPRQHSPGALTDLRSALV 2010

Query: 1339 GAVL---IDTKLNLDEVWRIFKPILSPIV 1364
               +   +  +    + +R   P L+ ++
Sbjct: 2011 NNTIFASLAVRHGFHKFFRHLSPGLNDVI 2039


>gi|432331590|ref|YP_007249733.1| ERCC4-like helicase [Methanoregula formicicum SMSP]
 gi|432138299|gb|AGB03226.1| ERCC4-like helicase [Methanoregula formicicum SMSP]
          Length = 749

 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 120/521 (23%), Positives = 220/521 (42%), Gaps = 85/521 (16%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQL +   A   NT+ +L TG GKT +A+++    A  I + G +  ++ LAPT  LV
Sbjct: 17  REYQLSIAMRALDGNTMVILPTGLGKTAVALLVA---ASRIHNEGGR--VLMLAPTKPLV 71

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC--------------WQKEINKNDVLVMTP 152
            Q       H  +  E Y  AK     D+                   + N+  V++ TP
Sbjct: 72  EQ-------HLRY-FERYLLAKSPAGDDASASPFAMFTGEAPPDERTADWNRASVILATP 123

Query: 153 QILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVV 212
           Q++ + +     +L  V  +V+DECH A GN+ Y   + + Y  + +KP +  MTASP  
Sbjct: 124 QVIKNDIIAGRYTLSDVTLLVVDECHRAVGNYAYV-FLAQRYMATADKPLILAMTASP-- 180

Query: 213 RKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
                     + ++ E+ + L   +  +E +TE +   P  +    F  + ++   DL  
Sbjct: 181 -------GGAQEKVQEVCANLG--IAHVETRTEND---PDVRPYV-FERELEYVTIDLPP 227

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            L+ +    +A +    G   + +  +  + K   ++LS  +A+I   +       A+ A
Sbjct: 228 DLKAAIQTINALIEDRLGVLASLHFSVPKREKLSMRELSAINAQIQQRIANRD-SAAFSA 286

Query: 333 VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL---PLADKIFLDFGFD--YS 387
             +  E +           Q S   K +L + L+  G+       + ++  D  F   + 
Sbjct: 287 ASVYAELMKLKHAVVLAESQGSEVLKGYLAK-LYAEGTGAGGSKASQRLVQDRSFRELFE 345

Query: 388 KAVD------------LGYISTKL----HELLQLFLSFGKSTQVLCIIFVERIIAAKVVE 431
           ++V+            LG +  +L    +  + +F ++  + Q+L     +  I +   E
Sbjct: 346 RSVEWPRELHPKPEVALGLVRQQLTDSPNSRIIIFATYRDTVQLLVDYLAKHGIDS---E 402

Query: 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
           RFV +              +  +   L+ K+Q   L  FR G   +L AT V EEG+ VP
Sbjct: 403 RFVGQ-------------ATKDAEKGLSQKMQIAALTRFREGVFKVLVATSVGEEGLDVP 449

Query: 492 NCSYVIRFD-LPKTVSSYIQSRGR-ARQHNSQFILMLERGN 530
           +   VI ++ +P  + S IQ +GR  R    + ++++ +G 
Sbjct: 450 STDLVIFYEAVPSEIRS-IQRKGRTGRSGAGRVVVLVTKGT 489


>gi|110666996|ref|YP_656807.1| Hef nuclease [Haloquadratum walsbyi DSM 16790]
 gi|109624743|emb|CAJ51150.1| ATP-dependent RNA helicase/nuclease Hef [Haloquadratum walsbyi DSM
           16790]
          Length = 851

 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 26/173 (15%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQ+++   A++ +T+  L TG GKT +++++      A + N      +FLAPT  LV
Sbjct: 23  RLYQIQLAGTARKTDTLVCLPTGLGKTTVSLLVT-----ATRLNSIGGTALFLAPTKPLV 77

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKND---------VLVMTPQILLD 157
            Q       H +F    Y  A  + + D   +  E++ +D         V++ TPQ++ +
Sbjct: 78  RQ-------HIEF----YRNALTIPDEDIVVFTGEVSPDDRAALWDDAQVVIATPQVIEN 126

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
            L    +SL+ V  +  DECH ATG + Y  I  E YH     P+V GM+ASP
Sbjct: 127 DLIGNRISLNSVTHLTFDECHRATGEYAYVYIA-ERYHDDATNPRVTGMSASP 178



 Score = 49.3 bits (116), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
            IIF E    A+ +  F+     +        TG +   + +T + Q++ L +FR G+  
Sbjct: 374 VIIFTESRDTAEALTEFLSASFDVQRFVGQNDTGRS---EGMTQREQQKALTAFRSGEFE 430

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILML 526
           +L +T V EEG+ VP    V+ F+   T    IQ +GR  RQ   + +++L
Sbjct: 431 VLISTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRKGRTGRQTEGRVVVLL 481


>gi|195572986|ref|XP_002104476.1| Dicer-1 [Drosophila simulans]
 gi|194200403|gb|EDX13979.1| Dicer-1 [Drosophila simulans]
          Length = 1533

 Score = 87.4 bits (215), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 129/564 (22%), Positives = 227/564 (40%), Gaps = 98/564 (17%)

Query: 531  LKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-TYVKTKSYIVESTGASVTTDSSVNL 589
            + Q  ++  ++ S+ + T+       EA    AC    + K +++  TGASV   S++ L
Sbjct: 55   MAQYREIEQMLLSKCANTEPPEQEQSEAERFSACLAAYRPKPHLL--TGASVDLGSAIAL 112

Query: 590  IHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ-TIVGPTSRNKNLS 644
            +++YC  LPSD +     +++   +E A    ++  L LP N+P +  IVG     + L+
Sbjct: 113  VNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLPMPTQTLA 172

Query: 645  KQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSENNLISKKNESLPGA 689
            ++L  L+AC +LH++G L+D L P       ++E        EP +  ++   +E  PG 
Sbjct: 173  RRLAALQACVELHKIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLSDEPRPGT 232

Query: 690  GTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDV 749
             T +R+  +          R        L+  +    C I  E  +    +   E D   
Sbjct: 233  -TKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPPE-DAQQ 290

Query: 750  GNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAKCF----QELFFNGLFGKLFVKSKS 804
            G   L    + K    ++ + SG+V +   +++K +      Q +  NG     F     
Sbjct: 291  GFGILTTKRIPKLSAFSIFTRSGEVKVSL-ELAKERVILTSEQIVCINGFLNYTF----- 344

Query: 805  SGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKS- 863
                       TN L    ++ L  P    N                C  +V  +K  + 
Sbjct: 345  -----------TNVLRLQKFLMLFDPDSTEN----------------CVFIVPTVKAPAG 377

Query: 864  -------FLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIH 916
                   FL   Q N   GN+ P R  P K                DA+  +D VV+  +
Sbjct: 378  GKHIDWQFLELIQAN---GNTMP-RAVPDK---------ERQAQPFDAQRFQDAVVMPWY 424

Query: 917  TGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQS 972
              +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ + +  QPLL +  +
Sbjct: 425  RNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLKIQNASQPLLDVDHT 481

Query: 973  HNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLY 1026
                N L     N  G     S + +K        Q  + + PEL      P S+ ++  
Sbjct: 482  SARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELCTVHPFPASLWRTAV 540

Query: 1027 LLPSVMQRLESLMLASQLREEINC 1050
             LP ++ R+  L+LA  +R++++ 
Sbjct: 541  CLPCILYRINGLLLADDIRKQVSA 564



 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 132/345 (38%), Gaps = 107/345 (31%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI------------------------DADL 1230
            K+IADC EALIGAY +  G   AL  M WLG+                        +A+ 
Sbjct: 1185 KSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAEN 1244

Query: 1231 EVSLVDDCIT-RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             V++     T R+ L  + P   E         ++ E  +GY+F  +  L +A+THAS  
Sbjct: 1245 VVTVYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYT 1304

Query: 1282 EFY---CYQNL------------------------------------------------- 1289
                  CYQ L                                                 
Sbjct: 1305 PNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHG 1364

Query: 1290 -YKHLQHCSTLLLSQITEYVKSFPKPGETT------------DSGPSMKAPKALGDLLES 1336
             +K  +H S  L   I  +V+   + G +             D    ++ PKALGD+ ES
Sbjct: 1365 FHKFFRHLSPGLNDVIDRFVRIQQENGHSISEEYYLLSEEECDDAEDVEVPKALGDVFES 1424

Query: 1337 IVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCTL 1394
            I GA+ +D+ ++LD VW ++  ++SP +      +P  P+REL+EL      F K     
Sbjct: 1425 IAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLA 1484

Query: 1395 KGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
             G  V   +     DV   G   G  R+ + AK  AA   L++L+
Sbjct: 1485 DGRRVRVTV-----DVFCKGTFRGIGRNYRIAKCTAAKCALRQLK 1524



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1008 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1067

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L  Y+  + F+P   W+ P
Sbjct: 1068 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1096


>gi|242008637|ref|XP_002425109.1| dicer-1, putative [Pediculus humanus corporis]
 gi|212508774|gb|EEB12371.1| dicer-1, putative [Pediculus humanus corporis]
          Length = 471

 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 118/292 (40%), Gaps = 62/292 (21%)

Query: 1078 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1137
            E L++LGDS LK++ S  LF TYP  HEG L+  +   V N  L   G  + L  +I  +
Sbjct: 9    ENLKILGDSFLKFSCSFFLFKTYPSLHEGILTNVKGKLVGNKNLLDCGVAKNLPNFINTN 68

Query: 1138 AFDPR-RW-------------------VAPGQLSLRPVP---CECGVDTLEVPLDGKFFT 1174
             F P   W                   + P  +S   +P   C  G+ + E     +   
Sbjct: 69   DFSPNFDWNPPLFSTPEVLLNYIVSKNMDPSIISRLEIPQKECLTGILSEETIESNRKLI 128

Query: 1175 QDTKV----VVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADL 1230
             +  V    +V  P  +    M  KTI+D  EALIG Y + GGL     ++ W GI    
Sbjct: 129  DEEGVKKLGLVKSPF-LNTELMSDKTISDVVEALIGVYLLNGGLAGGFKILNWFGI---- 183

Query: 1231 EVSLVDDCITRASLRSYVPRINEIKDIESKI----------------GYEFTVKFLLQEA 1274
               L +   T   +     R+N++ D ES +                GY F  K LL EA
Sbjct: 184  ---LPESNGTYEEIMKKPVRVNDVNDEESAVMTILGDVFYTDLEETLGYTFKRKELLLEA 240

Query: 1275 ITHASVQEFYCYQNL---YKHLQHCSTLLLS-QITEYVKSFPK---PGETTD 1319
            ITH S    Y    L   Y+ L+     +L   +T Y++   K   PG  TD
Sbjct: 241  ITHPS----YVRNRLTPCYQRLEFLGDAILDFLVTVYIQENFKDMNPGLITD 288



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 9/118 (7%)

Query: 1323 SMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPP----LRELI 1378
            S+  PKALGD+ ES+ GA+ ID++ +L+ VW +F  I+   +  D+  + P    +R L 
Sbjct: 355  SVTVPKALGDIFESLAGAIFIDSENSLETVWNVFYKIMKKEL--DEFTVNPPKTAVRVLH 412

Query: 1379 ELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1436
            E+C    +F     T+  ++V  +  +  KD  +V  G   ++K AK  A    LK++
Sbjct: 413  EICGEKPFF---ETTVYEKVVSVKCSIYYKDEEIVAHGFGDNKKDAKKSACKMALKQI 467


>gi|60593908|pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
 gi|60593909|pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
 gi|60593910|pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
 gi|60593911|pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
 gi|60593912|pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
 gi|60593913|pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
          Length = 494

 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 12/167 (7%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PRIYQ  ++   K  N + VL TG GKT+IA+M+ +      +   +   ++ LAPT  L
Sbjct: 10  PRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAE-----YRLTKYGGKVLMLAPTKPL 64

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVD--EWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
           V Q  +  R   +   E+     G    E  S+ W +      V+V TPQ + + L    
Sbjct: 65  VLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR----AKVIVATPQTIENDLLAGR 120

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
           +SL+ V  IV DE H A GN+ Y  I +E+  ++ N P V G+TASP
Sbjct: 121 ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN-PLVIGLTASP 166



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 20/155 (12%)

Query: 381 DFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPF 439
           + G D+ K         KL E+++  L   +++++  I+F   R  A K+V   VK    
Sbjct: 337 EIGLDHPKM-------DKLKEIIREQLQRKQNSKI--IVFTNYRETAKKIVNELVK---- 383

Query: 440 LTHLTVAYLTGSTTSVD--ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
              +      G  +  +   L+ + QK +L+ F  G+ N+L AT V EEG+ VP    V+
Sbjct: 384 -DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV 442

Query: 498 RFD-LPKTVSSYIQSRGRARQHN-SQFILMLERGN 530
            ++ +P  + S IQ RGR  +H   + I+++ +G 
Sbjct: 443 FYEPVPSAIRS-IQRRGRTGRHMPGRVIILMAKGT 476


>gi|426222380|ref|XP_004005372.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 [Ovis aries]
          Length = 943

 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 13/219 (5%)

Query: 46  PRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           PR +QL++     K +NTI    TG GKT +A+++ +   +     G K  ++F A  + 
Sbjct: 242 PRNFQLELALPAQKGKNTIICAPTGCGKTFVALLICEHHLKQF-PQGRKGKVVFFAVQLP 300

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           L  QQ      + +    +  G  G +  DS   ++ +  ND++++TPQIL+++L+   +
Sbjct: 301 LYEQQKSAFSEYFERLGYKVSGISG-EIADSVSVEQIVENNDIIILTPQILVNSLKDGTI 359

Query: 165 -SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSS 218
            SL I   ++ DECH+   NHPY  IM  +  +     SD+ P+V G+TAS  V    + 
Sbjct: 360 PSLSIFTLMIFDECHNTNKNHPYNMIMFNYLDQKLGGSSDSLPQVVGLTASVGVGDAKNE 419

Query: 219 AMDCEGQISELESTLDSQVF-TIEDKTE--MEVFVPSAK 254
           A   E  I  L ++LD+ V  T+ D  E   EVF    K
Sbjct: 420 AEATE-YICRLCASLDTSVLTTVRDNLEELEEVFYKPQK 457



 Score = 60.5 bits (145), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 7/169 (4%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS--TTSVDALTPKVQKEVLESFRGGK- 474
           I+FV+       +++++++ P L+ L    LTG   T     +T   QK  L++FR  + 
Sbjct: 635 ILFVKTRALVDALKKWIEENPKLSLLKPCILTGRGRTNQTMGMTLPAQKCALDAFRTNRD 694

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR 534
             +L AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+    ++ ++
Sbjct: 695 SKILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNADVIEK 754

Query: 535 NKLFDIIRSERSVTD--TALSRDPEACFLKACTYVKTKSYIVESTGASV 581
            +L   I  E+ + D  ++L R  EA F +    ++ +  ++      V
Sbjct: 755 EQLN--ICKEKMMNDSISSLQRWNEAVFKEKIHQIQVQEKLIRDNQGKV 801


>gi|193787170|dbj|BAG52376.1| unnamed protein product [Homo sapiens]
          Length = 820

 Score = 87.0 bits (214), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 3/127 (2%)

Query: 1025 LYLLPSVMQRLESL--MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLEL 1082
            + ++P     ++ L   + S+    I   SR       LIL+ALT     + F++ERLE+
Sbjct: 156  MAVMPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEM 215

Query: 1083 LGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR 1142
            LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  L++LG  + L   +  S FDP 
Sbjct: 216  LGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPP 275

Query: 1143 -RWVAPG 1148
              W+ PG
Sbjct: 276  VNWLPPG 282



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 703  PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 762

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 763  AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 814

Query: 1441 KRI 1443
             ++
Sbjct: 815  PQV 817


>gi|359416970|ref|ZP_09209211.1| Hef nuclease [Candidatus Haloredivivus sp. G17]
 gi|358032669|gb|EHK01333.1| Hef nuclease [Candidatus Haloredivivus sp. G17]
          Length = 708

 Score = 87.0 bits (214), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 130/520 (25%), Positives = 211/520 (40%), Gaps = 120/520 (23%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  +   + +RNT+ VL TG GKT+IA M+    A+ ++S      ++FLAPT  LV
Sbjct: 12  RAYQEVIAASSMKRNTMIVLPTGLGKTVIAAMIA---AKKLESGK----VLFLAPTKPLV 64

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDS--QCWQKEINKNDVLVMTPQILLDALRKAFL 164
            Q     +   + + ++     G    D   + W++      V   TPQ++ + L    +
Sbjct: 65  EQHKKSFQEFIEIDKDQMEVMTGEIRPDDRYEIWKE----KKVFFATPQVVENDLIAGEV 120

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFY-HKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
            +      + DECH ATG + Y  I ++   HK        G+TASP          D E
Sbjct: 121 PVRDFSLTIFDECHRATGEYSYVFISEKILSHK-------IGLTASP--------GGDKE 165

Query: 224 GQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281
            +I E+   L+ + F +  ED  ++E ++           Q K          EV+W K 
Sbjct: 166 -KIMEVADNLEMENFEVRTEDDPDVEPYI-----------QDK----------EVNWIKV 203

Query: 282 DASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVL 341
                            ++++ +T RK+L D   K L  L ++  I +   V I    +L
Sbjct: 204 P----------------LNNRFETARKKLEDAKRKPLSELKDMEYISS---VNINKTDLL 244

Query: 342 KAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLD--------FGF--------- 384
           K Q E      +S   K++    +    SAL ++  I L         + +         
Sbjct: 245 KLQSEIRSKLSTSDDPKHY--SAISHAASALKISQAIELLETQGVSQCYSYMRGLENDDS 302

Query: 385 ----------DYSKAVDL-------GYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIA 426
                     D+ KA  L       G    KL ++++L   F        I+F E R  A
Sbjct: 303 KAGKKALNDEDFRKAKSLVEYLKKKGEEHPKLEKVVELLDGFDGR----AIVFTEYRASA 358

Query: 427 AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEE 486
            K+VE         +H  V ++       D +T   Q E LE F  G+ ++L +T + EE
Sbjct: 359 DKIVEELE-----ASHDPVKFV--GQQGDDGMTQTQQIETLEQFGDGEYDVLVSTSIGEE 411

Query: 487 GMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
           G+ VP+   VI ++   +    IQ  GR  +H S  + +L
Sbjct: 412 GLDVPSVDKVIFYEPVSSSVRDIQRMGRTGRHESGEVSVL 451


>gi|432938949|ref|XP_004082559.1| PREDICTED: Fanconi anemia group M protein homolog [Oryzias latipes]
          Length = 1928

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 128/538 (23%), Positives = 224/538 (41%), Gaps = 92/538 (17%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           N+  R YQLK+ E A  +NT+  L TG GKT IA +++ +  +   S      I+F+APT
Sbjct: 113 NYPIRNYQLKISEAALFQNTLVCLPTGLGKTFIASVVMYNFYRWYPSGK----IVFMAPT 168

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
             LV QQ           +E  Y   G+     Q    E+          Q +  + R  
Sbjct: 169 KPLVAQQ-----------IEACYKVMGI----PQTHMAELT-GSTAAKQRQDVWRSKRVF 212

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDC 222
           FL+  + C +VIDE H A GNH Y +++++   ++  + +V  ++A+P        A+  
Sbjct: 213 FLTPQVKC-VVIDEAHKALGNHAYCQVIRQLSSQT-LQFRVLALSATPGGDAKSVQAVIS 270

Query: 223 EGQISEL----ESTLDSQVFTIEDKTEMEVFVP-----SAKESCRFYDQSKFCGSDLKGK 273
              IS +    E +LD Q  + +   + +V VP     SA ++       KF    ++ +
Sbjct: 271 NLLISHIELRSEESLDIQAHSHQRSVD-KVVVPLGEALSAYQTRYLEVLKKFMSRLVQNR 329

Query: 274 LEV-----SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQ----------LSDYHAKIL 318
           +       S SK+   L++ Q      ++     H    +Q          +S YH   L
Sbjct: 330 VMSQKDLRSLSKYQLILARDQ------FRKNPPPHIKSPQQGMLEGDFALCISLYHGYEL 383

Query: 319 YCLDELGLICAYEAVKICLEKVLK-AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLA-- 375
             L ++GL   +  V+  ++   + ++ + E+ R  +    Y   E + V  SA P A  
Sbjct: 384 --LMQMGLRSLFFYVQGIMDGSREMSRTKNELQRTPTFMDLYHEMEAMFVKPSAGPDAPF 441

Query: 376 ----------DKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII 425
                     +++ L     ++++    ++ST+    + +F SF +S Q +  +      
Sbjct: 442 VYSHPKLKKLEEVVLQHFRVWAESNSDNHVSTR----VMIFSSFRESVQEIAAM------ 491

Query: 426 AAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE 485
                    +  P +  +T      +   V   T K Q EV++ FR G  N L +T V E
Sbjct: 492 -------LNRHSPLIRVMTFMGQASAGKGVKGFTQKEQLEVVQRFRQGGFNTLVSTCVGE 544

Query: 486 EGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERG------NLKQRNK 536
           EG+ +     ++ FD  K     +Q  GR  R+   + +++L  G      N  Q NK
Sbjct: 545 EGLDIGEVDLIVCFDAQKNPIRLVQRMGRTGRKRQGRIVVVLAEGREERTYNQSQSNK 602


>gi|18978387|ref|NP_579744.1| Hef nuclease [Pyrococcus furiosus DSM 3638]
 gi|18894225|gb|AAL82139.1| ATP-dependent RNA helicase, putative [Pyrococcus furiosus DSM 3638]
          Length = 764

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 12/167 (7%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PRIYQ  ++   K  N + VL TG GKT+IA+M+ +      +   +   ++ LAPT  L
Sbjct: 11  PRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAE-----YRLTKYGGKVLMLAPTKPL 65

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVD--EWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
           V Q  +  R   +   E+     G    E  S+ W +      V+V TPQ + + L    
Sbjct: 66  VLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR----AKVIVATPQTIENDLLAGR 121

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
           +SL+ V  IV DE H A GN+ Y  I +E+  ++ N P V G+TASP
Sbjct: 122 ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN-PLVIGLTASP 167



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 20/155 (12%)

Query: 381 DFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPF 439
           + G D+ K         KL E+++  L   +++++  I+F   R  A K+V   VK    
Sbjct: 338 EIGLDHPKM-------DKLKEIIREQLQRKQNSKI--IVFTNYRETAKKIVNELVK---- 384

Query: 440 LTHLTVAYLTGSTTSVD--ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
              +      G  +  +   L+ + QK +L+ F  G+ N+L AT V EEG+ VP    V+
Sbjct: 385 -DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV 443

Query: 498 RFD-LPKTVSSYIQSRGRARQHN-SQFILMLERGN 530
            ++ +P  + S IQ RGR  +H   + I+++ +G 
Sbjct: 444 FYEPVPSAIRS-IQRRGRTGRHMPGRVIILMAKGT 477


>gi|390347586|ref|XP_783996.3| PREDICTED: interferon-induced helicase C domain-containing protein
           1-like [Strongylocentrotus purpuratus]
          Length = 921

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 120/501 (23%), Positives = 225/501 (44%), Gaps = 55/501 (10%)

Query: 60  RNTIAVLETGAGKTMIAVML-IKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118
           +N++ V  TG+GKT +AV + IK + +   ++     ++F+   V LV QQ +  +   +
Sbjct: 226 KNSVIVAPTGSGKTRVAVAIAIKALKEHEGASQASNKVVFVVNKVALVEQQKNAFQ---E 282

Query: 119 FEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDE 176
           F + +  G  G  +  SQ    +++   DV+V+T QILL+AL+     SL ++  I++DE
Sbjct: 283 F-IPDVVGISG--DMSSQVPLVRQLKHADVIVLTAQILLNALKDDESFSLSLLRLIILDE 339

Query: 177 CHHATGNHPYTKIMKEFYHKSDNK---PKVFGMTASPVVRKGVSSAMDCEGQISELESTL 233
           CH+      Y  IM  +  K   +   P+V G+TAS  V+K      D    + +L + L
Sbjct: 340 CHNTQKESAYNNIMAYYRDKKKTQATLPQVVGLTASLGVKKA-KRQTDAVKHVLKLCANL 398

Query: 234 D----SQVFTIEDKTEMEVFVPSAKE-SCRFYDQSKFCGSDLKGKL--EVSWSKFDASLS 286
           D    S+V   +D  +     P  +    R  D       +L GK+   +  + F  S  
Sbjct: 399 DAEKISKVVKYKDSLKRSYHTPREETIGVRGRDDRDPFKIEL-GKVMDRIELAIFSTSDG 457

Query: 287 KLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE 346
           K     L   ++M        K++S +     Y   E+  + AY  VK+   +  +  ++
Sbjct: 458 K---KILELQREM--------KEMSSHRGTQQY-EGEVTKLLAYIPVKVQNSETARVLQD 505

Query: 347 C----EIYRQSSL------------QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV 390
           C    ++Y QS                  +++E++    +     DK+   F     +  
Sbjct: 506 CANFLKMYNQSLYINRDARTVDALNHINSYIQELIDTTQNTQDSVDKLIKLFEEIKPQIE 565

Query: 391 DLGYISTKLHELLQ-----LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTV 445
           ++    +  + +LQ     L   + K  + L I+F     + + ++ ++++ P L  L  
Sbjct: 566 EICRGPSNQNPVLQRLEEILVQEYSKKPETLAILFTNTRDSTRALQAWIQETPSLALLNP 625

Query: 446 AYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTV 505
            +L G+  S   +T   Q+++L  F+  K  L+ +T V EEG+ +  C+ VIR++  +  
Sbjct: 626 GHLIGTGGST-GMTQTQQEQLLAMFKEKKHKLVISTSVAEEGLDIQMCNLVIRYNYVRDD 684

Query: 506 SSYIQSRGRARQHNSQFILML 526
              +Q+RGR+R    +F L+ 
Sbjct: 685 IGRVQARGRSRAEGGKFYLVF 705


>gi|347440705|emb|CCD33626.1| hypothetical protein [Botryotinia fuckeliana]
          Length = 984

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 141/659 (21%), Positives = 248/659 (37%), Gaps = 116/659 (17%)

Query: 572  YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQ 631
            Y V ++ A +T   S+ ++  + + LP       +  +   + ++ + CE  LP  AP +
Sbjct: 56   YPVPNSDAKLTYRMSLTVLSAFVDSLPRAPESVLRVDYVVTTVDKQFICEAILPEEAPIR 115

Query: 632  TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGT 691
              +G  +  K ++K     E C  LHQ G +ND+LL + +  +       +N  L   G 
Sbjct: 116  GAIGRPATTKQVAKCSAAFETCVILHQKGYINDYLLSTFKRSAH----MMRNALLAVDG- 170

Query: 692  TKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGN 751
             K++E +       L    G K G+         +   +        LL  S L  D+  
Sbjct: 171  -KKQEAYDMQTKPTLWSSKG-KQGIFYMTVLSLKSPDNLDRASQPLGLLTRSPLP-DLPE 227

Query: 752  FELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFF 811
            F L       +  + V  +  + L+ +++ +   F    F  +F K +            
Sbjct: 228  FVLHFGAGRNSPTSCVPLASSITLEKNKLDQVNMFTLCLFQDVFSKAY------------ 275

Query: 812  LKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASV----VEFIKEKSFLGA 867
             K + +S+      Y L+P+  +N        ++W   NP + +    VE++++      
Sbjct: 276  -KSDPDSM-----PYFLVPINCLNAI------VDWKSQNPMSIIDWETVEYVQDFE---- 319

Query: 868  AQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIV 927
                 N     P    P      GK   +  +  +         + ++   + Y  ++ V
Sbjct: 320  -----NKQADKPWEHKPWL----GKPDDYFKDKFITDPFDGSRKLWSVGITKEYRPLDPV 370

Query: 928  NNSSAESPFDGNTDDDSKTF---VNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFND 984
              ++A  P  G   ++S       + +++          QP++         NLL  F+ 
Sbjct: 371  PPNTA--PRKGARKNNSNIMEYSCSLWAKARAKRTFDEEQPVIEATYISLRRNLLDEFD- 427

Query: 985  GGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQL 1044
             GG  + SK      +P   + + P       +P +VV   YLLP+++ R+ES ++A + 
Sbjct: 428  -GGELETSKKCFIILEP---LKVSP-------LPTTVVAMAYLLPAIIHRVESYLIALEA 476

Query: 1045 REEINCHSRNFHIPSSLILEALT----------------TLGCCESFSMERLELLGDSVL 1088
             + ++   R       L LEA+T                  G   ++  ERLE LGD  L
Sbjct: 477  TDLLHLDIR-----PDLALEAVTKDSDNSGEHGEEQTNFQRGMGNNY--ERLEFLGDCFL 529

Query: 1089 KYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPG 1148
            K   S  L+   P   E +    R   +CN  L       +L  YIR +AF+ R W   G
Sbjct: 530  KMGTSISLYGLNPDSDEFRYHVDRMCLICNKNLFNTALKLELYKYIRSAAFNRRAWYPEG 589

Query: 1149 QLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGA 1207
               LR                GK  T              H+ +G K++AD  EA+IGA
Sbjct: 590  PELLR----------------GKTATAPNT----------HK-LGDKSVADVCEAMIGA 621


>gi|210075569|ref|XP_502067.2| YALI0C20933p [Yarrowia lipolytica]
 gi|199425312|emb|CAG82387.2| YALI0C20933p [Yarrowia lipolytica CLIB122]
          Length = 923

 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 218/532 (40%), Gaps = 74/532 (13%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  + +     NT+  L TG GKT IA +++ +  +  K       IIF+APT  LV
Sbjct: 142 RTYQHTIIQSCLIENTLCSLPTGLGKTFIASVVMLNFYRWFKDAK----IIFMAPTKPLV 197

Query: 107 HQQYDV-IRVHTDFEVEEYYGAKGVDEWD-SQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            QQ D  +R+      +      GV + D +  W    NK  V   TPQ++   L    L
Sbjct: 198 SQQIDACLRITGIPRHDCSVLMGGVKQADRAHEW---ANKR-VFFATPQVVELDLDGEIL 253

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKSDNKPKVFGMTASPVVRKGVSSAMDC 222
               V  +V+DE HH +G + Y  ++K+    H+S    +V G+TA+P        A   
Sbjct: 254 DPKTVSLLVVDEAHHTSGKYSYGIVVKKLLDAHQSF---RVLGLTATP--------ASKV 302

Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKF---CGSDLKGKLEVSWS 279
           EG  S ++  L S    +E K E +   P  ++     ++ K     GSD+   L ++  
Sbjct: 303 EGVQSVVQHLLISH---LEVKGEQD---PDVQQYMHNREEVKINVDLGSDINELLALTGQ 356

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTL---RKQLSDYHAKILYC-------LDELGLICA 329
               +LS +  +      + D    +L   +K++  Y  +  Y           +G + A
Sbjct: 357 VLKPTLSMM--ASKGVLHNTDIAKISLFGVKKEIERYMFRTKYLGPAAQYKYRGIGAVVA 414

Query: 330 YEAVKICLEK---------VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
             A    L +          LK + + E+ R+   +      E +  IGS L     I  
Sbjct: 415 SIAHATQLLQHQGITQFYDTLKRRHDEEMARKQPTKSY----EQVGDIGSILDATKTIMK 470

Query: 381 DFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL 440
             G  Y     L Y+ ++L+E        G +T   CIIF        V+  ++ K P  
Sbjct: 471 KEG--YLAHPKLNYLGSELNEFFSKAPE-GANTGT-CIIFARFRSTVNVIMEYLTKFP-- 524

Query: 441 THLTVAYLTGSTTSVD-----ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSY 495
             +      G   S +      +T K Q+EV+  FR G  N L AT + EEG+ +     
Sbjct: 525 -QVKPHEFIGQAPSREEGGGRGMTQKKQQEVISKFRKGVYNTLVATSIAEEGLDIGQVDL 583

Query: 496 VIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLE----RGNLKQRNKLFDIIR 542
           +I +D   +  + +Q  GR  R  + + +L++       N+K R+    I R
Sbjct: 584 IICYDSNASPITSLQRMGRTGRSRDGRVVLLMTDKEMENNIKSRDNYSYIQR 635


>gi|397652338|ref|YP_006492919.1| Hef nuclease [Pyrococcus furiosus COM1]
 gi|393189929|gb|AFN04627.1| Hef nuclease [Pyrococcus furiosus COM1]
          Length = 763

 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 12/167 (7%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PRIYQ  ++   K  N + VL TG GKT+IA+M+ +      +   +   ++ LAPT  L
Sbjct: 10  PRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAE-----YRLTKYGGKVLMLAPTKPL 64

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVD--EWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
           V Q  +  R   +   E+     G    E  S+ W +      V+V TPQ + + L    
Sbjct: 65  VLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR----AKVIVATPQTIENDLLAGR 120

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
           +SL+ V  IV DE H A GN+ Y  I +E+  ++ N P V G+TASP
Sbjct: 121 ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN-PLVIGLTASP 166



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 20/155 (12%)

Query: 381 DFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPF 439
           + G D+ K         KL E+++  L   +++++  I+F   R  A K+V   VK    
Sbjct: 337 EIGLDHPKM-------DKLKEIIREQLQRKQNSKI--IVFTNYRETAKKIVNELVK---- 383

Query: 440 LTHLTVAYLTGSTTSVD--ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
              +      G  +  +   L+ + QK +L+ F  G+ N+L AT V EEG+ VP    V+
Sbjct: 384 -DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV 442

Query: 498 RFD-LPKTVSSYIQSRGRARQHN-SQFILMLERGN 530
            ++ +P  + S IQ RGR  +H   + I+++ +G 
Sbjct: 443 FYEPVPSAIRS-IQRRGRTGRHMPGRVIILMAKGT 476


>gi|402218846|gb|EJT98921.1| P-loop containing nucleoside triphosphate hydrolase protein
           [Dacryopinax sp. DJM-731 SS1]
          Length = 1094

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 116/523 (22%), Positives = 208/523 (39%), Gaps = 75/523 (14%)

Query: 42  INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
           IN   R YQ  + + A  +NT+  L TG GKT IA +L+ +  +          ++F+AP
Sbjct: 92  INKPIRDYQYNIVQAALFKNTLVALPTGLGKTFIAGVLMLNYYRWFPDGK----VVFVAP 147

Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           T  LV QQ           VE+     G  E      Q+      ++ MTPQ L + L +
Sbjct: 148 TKPLVSQQIKACHETCGIPVEDAIEMTG--ETPQATRQRHWASKRIVYMTPQTLQNDLLR 205

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR-KGVSSAM 220
             +    +  +V+DE H ATGN+ Y  +++ F    +   ++  +TA+P  + K V   +
Sbjct: 206 EVVDPRDIILLVVDEAHKATGNYAYATVVR-FMMAKNPHFRILALTATPGSKPKTVQDII 264

Query: 221 DC--EGQIS-ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277
           D    G I    E +LD + + I +KT          E C         G+ + G  E  
Sbjct: 265 DSLHVGHIEIRDERSLDLKQY-IHEKT---------MEKCVVQ-----MGASINGIKERL 309

Query: 278 WSKFDASLSKLQGSQL-------------NCYKDMDDKHKTLRKQLSDYHAKILYCLDEL 324
            +  + ++  L+G  +             +C K +D+  +  + +   + A +L  L +L
Sbjct: 310 LALMENTVKPLRGKDIFPDYVKVADIHPYSCKKWIDELRRKPQGRDFPWAAALLMRLHKL 369

Query: 325 GLICAY---EAVKICLEKVLKAQEECEIYRQSSLQC--------------KYFLEEVLHV 367
               AY   E+V++    +L A  +    ++   +                Y  E V   
Sbjct: 370 TFAMAYLCEESVEMAYNTLLDAAGKKLTTKEGGNKLSNDPKFRDLITEIENYRNERVTGG 429

Query: 368 IGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAA 427
                P  DK+      ++  A D G  ST++               V C     R    
Sbjct: 430 GPVGHPKMDKLVA-VALEHFAAPDDGADSTRV--------------MVFCQY---RDCVD 471

Query: 428 KVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEG 487
           ++V+    + P +        +        +  K Q E++  F+ G  N+L AT + EEG
Sbjct: 472 EIVKSLKLQQPIIRASKFVGQSSDKRGDRGMAQKDQIEIIRRFKQGDFNVLVATSIGEEG 531

Query: 488 MHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
           + +     +I +D+ K+    +Q  GR  R+ + + ++++  G
Sbjct: 532 LDIGEVDLIICYDVQKSSIKMLQRIGRTGRKRSGKIVVLMAEG 574


>gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 760

 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 56/78 (71%), Gaps = 1/78 (1%)

Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
           GS T     T K QKEV+E+FR GK N++  T+V+EEG+ VP C+ VIR D P TV++ I
Sbjct: 561 GSNTDGGMSTSK-QKEVVEAFRTGKANVVVTTNVLEEGLDVPECNLVIRIDAPSTVTALI 619

Query: 510 QSRGRARQHNSQFILMLE 527
           QSRGRAR  NS+F+ +++
Sbjct: 620 QSRGRARHRNSEFVAIIK 637



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 10/108 (9%)

Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
           LV QQ  VI+  T  +V   +G       DS        K+DVLV+   + ++ ++K  L
Sbjct: 198 LVTQQTKVIKDETGLDVIGLHGDSNSTILDS--------KHDVLVIIGALFINLIQKDHL 249

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN--KPKVFGMTASP 210
           +L   C IV+DE HH   +HP+  +++E+Y K     +P++ G+TASP
Sbjct: 250 NLSDYCIIVVDEAHHIVKDHPFAVLLREYYTKLGKSLQPRIMGLTASP 297


>gi|256810024|ref|YP_003127393.1| Hef nuclease [Methanocaldococcus fervens AG86]
 gi|256793224|gb|ACV23893.1| ERCC4 domain protein [Methanocaldococcus fervens AG86]
          Length = 767

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 217/498 (43%), Gaps = 64/498 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQ  +   A ++ T+ VL TG GKT IA+++I  I    K +G    ++ LAP+  LV
Sbjct: 16  RLYQQIIAANALKKKTLCVLSTGLGKTAIAILVIAGILT--KKDG---KVLILAPSRPLV 70

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            Q  +  R+     ++E        +       +   K  + V TPQ++ + +    +++
Sbjct: 71  EQHCN--RLKDVLNIDENMIIALTGKISPNKRAELYKKGKIFVATPQVIENDIIAGRINI 128

Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQI 226
           D    ++ DE HH TG+H Y  + K+F     +K  V G+TASP       S +D   +I
Sbjct: 129 DDFVLLIADEAHHTTGDHAYAFVAKKF----KDKCHVLGLTASP------GSDIDKVMEI 178

Query: 227 SELESTLDSQVFTIEDKTEMEVFVPSAKES-------CRFYDQSKFCGSDLKGKLEVSWS 279
            E       +V T ED  +++ +V   K +         F    K     LK +L++   
Sbjct: 179 CENLGIEHVEVRT-EDDEDVKPYVAKVKLTPIRIELPPEFKKALKLINEALKERLKI--- 234

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE- 338
                        L  +  ++      + +L + + K L+  DE      YE +++C E 
Sbjct: 235 -------------LKDFGVINSIANVTKTELIELNNK-LFSYDEE---VKYELIRVCSEA 277

Query: 339 -KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397
            K++ A+E  E  +  ++   Y  +  +    SA  +++           +AV+L   S 
Sbjct: 278 LKLMHAKELLE-SQGKTVFLSYINKLSMQRTKSAKSISN------DEKIREAVNLLMESN 330

Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT----VAYLTGSTT 453
             H  L+  +   K+  +L     ERII        V+K+  L H      + ++  +  
Sbjct: 331 VEHPKLEKVVDMVKN--ILEKNKDERIIVFAQYRDTVEKIVNLLHQNGIKAIRFIGQANK 388

Query: 454 SVDALTPKVQKEVLESF-RGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
               ++ K Q E +E F R G V  L +T V EEG+ +P  +Y+I ++   +   +IQ R
Sbjct: 389 EGKGMSQKQQIEAIEKFKREGSV--LVSTSVSEEGIDIPTVNYIIFYEPVPSEIRFIQRR 446

Query: 513 GRA-RQHNSQFILMLERG 529
           GRA R    +  +++ +G
Sbjct: 447 GRAMRGEGGKAYILIAKG 464


>gi|195037032|ref|XP_001989969.1| GH18503 [Drosophila grimshawi]
 gi|193894165|gb|EDV93031.1| GH18503 [Drosophila grimshawi]
          Length = 2254

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 132/345 (38%), Gaps = 107/345 (31%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDA---DLEVSLVDD-------------- 1237
            K+IADC EALIGAY +  G   AL  M WLG+      L  +  DD              
Sbjct: 1906 KSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPYKLVPTAADDERRAPGTSKPNAKN 1965

Query: 1238 --------CITRASLRSYVPR--------INEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281
                       R+ L  + P         ++  ++ E+ +GY+F  +  L +A+THAS  
Sbjct: 1966 MVTIYGAWPTPRSPLLHFAPNATVELEHLLSGFEEFEASLGYKFRDRSYLLQAMTHASYT 2025

Query: 1282 EFY---CYQNL------------------------------------------------- 1289
                  CYQ L                                                 
Sbjct: 2026 PNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHG 2085

Query: 1290 -YKHLQHCSTLLLSQITEYVKSFPKPGETT------------DSGPSMKAPKALGDLLES 1336
             +K+ +H S  L   I  +V+   + G +             D    ++ PKALGD+ ES
Sbjct: 2086 FHKYFRHLSPGLNDVIDRFVRIQQENGHSISEEYYLLSEEECDDAEDVEVPKALGDVFES 2145

Query: 1337 IVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCTL 1394
            I GA+ +D+ L+LD VWR++  ++ P +      +P  P+REL+EL      F K     
Sbjct: 2146 IAGAIFLDSDLSLDVVWRVYSNMMKPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLA 2205

Query: 1395 KGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
             G  V   +     DV   G   G  R+ + AK  AA   L++L+
Sbjct: 2206 DGRRVRVTV-----DVFCKGTFRGIGRNYRIAKCTAAKCALRQLK 2245



 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1722 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYMTYENVHEGKLSHLRSKQVANL 1781

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L  Y+  + F+P   W+ P
Sbjct: 1782 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1810



 Score = 70.5 bits (171), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 22/143 (15%)

Query: 576 STGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ 631
           ST ASV   +++ L+++YC  LPSD +     +++  S+E      Y+  L LP N+P +
Sbjct: 819 STAASVDLSTAIALVNKYCARLPSDTFTKLTALWRCASSERQGIKLYQYTLRLPINSPLK 878

Query: 632 -TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSE 675
             IVG     + L+++L   +AC +LH++G L+D L P       ++E        EP +
Sbjct: 879 YDIVGLPMPTQTLARRLAAFQACVELHKIGELDDQLQPIGKEGFRALEPDWECFDLEPED 938

Query: 676 NNLISKKNESLPGAGTTKRKELH 698
             ++ + +E  P  GTTKR++ +
Sbjct: 939 EQIVQQNDE--PRPGTTKRRQYY 959



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 13/127 (10%)

Query: 412 STQVLC-IIFVERIIAAKVVERFV----KKVPFLTHLTVAYLTGSTTSVDALTPK----- 461
           S++ LC +I+  +   A+V+   +    K+ P L  L   Y T    +  A  PK     
Sbjct: 489 SSETLCALIYCNQNHTARVLFELLAEMSKRDPDLKFLRCQYTTDRIAN-PATEPKEAEQE 547

Query: 462 --VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
              Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   
Sbjct: 548 HRRQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAP 607

Query: 520 SQFILML 526
           +  I+++
Sbjct: 608 AYHIMLV 614



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 20/195 (10%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F PR +Q+++   A  RNTI  L   + K  IA+ L+++ ++  + NG  K+ ++L+  +
Sbjct: 15  FTPRDFQVELLASAFERNTIICLGHKSSKEFIALKLLQEFSRRGRRNG--KMSVYLSSQI 72

Query: 104 HL-VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
                  Y ++   TD +V +    + V    + CW        V +  P+  L  L+  
Sbjct: 73  DAEATSMYTMLTHLTDLKVWQEQPDQQVPL--NHCWA----DYHVSIHKPESFLILLQNR 126

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--KSDNKPKVFGMTASPVVRKGVSSAM 220
            + L  V  IV+++CH +        I +EF    K  ++P++ G+ A P+   G     
Sbjct: 127 DILLSSVQLIVLEDCHDSAVYRSVLPIFEEFVQPAKPCDRPRILGL-AGPLHSAG----- 180

Query: 221 DCEGQISELESTLDS 235
            CE  + EL + L++
Sbjct: 181 -CE--LEELNAMLNT 192



 Score = 47.0 bits (110), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 14/159 (8%)

Query: 901  SVDAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYG 956
            + +A+  +D VV+  +  +     + + EI  + S  S F G   D+ +TF +Y+  KY 
Sbjct: 1129 AFEAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYN 1185

Query: 957  IVLIHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPE 1010
            + + +  QPLL +  +    N L     N  G     S + +K        Q  + + PE
Sbjct: 1186 LTIQNTAQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPE 1244

Query: 1011 LLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEIN 1049
            L      P S+ ++   LP ++ R+  L+LA  +R++++
Sbjct: 1245 LCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVS 1283


>gi|261403123|ref|YP_003247347.1| Hef nuclease [Methanocaldococcus vulcanius M7]
 gi|261370116|gb|ACX72865.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 783

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 121/501 (24%), Positives = 223/501 (44%), Gaps = 69/501 (13%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQ  +   A  +NT+ VL TG GKT IA+++I  I    K +G    ++ LAP+  LV
Sbjct: 16  RVYQQIIAGNALNKNTLCVLSTGLGKTAIAILVIAGILT--KKDG---KVLILAPSRPLV 70

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            Q Y  ++   + + ++     G  +   +  +    K  + + TPQ++ + +    +++
Sbjct: 71  EQHYKKLKDVLNIDEDKIIALTG--KISPKKREDLYKKGKIFIATPQVIENDIIAGRINI 128

Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQI 226
           D    ++ DE HH TG+H Y  + K+F     +K  + G+TASP       S +D   +I
Sbjct: 129 DEFILLIADEAHHTTGDHSYAFVAKKFR----DKCHILGLTASP------GSDIDKIMEI 178

Query: 227 SELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLS 286
            E       +V T ED  +++ ++   K         K    +L  + + + +  + +L 
Sbjct: 179 CENLGIEHVEVRT-EDDEDVKPYIAKIK--------LKPIRIELPKEFKQALTLINEALK 229

Query: 287 KLQGSQLNCYKD---MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE--KVL 341
                +L   KD   ++  +   +  L + + + L+  DE      YE +K+C E  K++
Sbjct: 230 ----ERLKILKDAGVVNSIYHITKTDLIELNKR-LFAYDEQ---IKYELIKVCSEALKLM 281

Query: 342 KAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLH- 400
            A+E  E     S     FL  +  +       A  +  D      KAV+L   S   H 
Sbjct: 282 HARELLE-----SQGKTVFLNYINKLSSQRTKSAKSVINDEKI--IKAVNLLLKSNTDHP 334

Query: 401 ------ELLQLFLSFGKSTQVLCIIFVE-RIIAAKVV----ERFVKKVPFLTHLTVAYLT 449
                 E+++  L   K  ++  IIF + R    K+V    +  +K + F+         
Sbjct: 335 KLEKVIEMVKKILKENKDERI--IIFAQYRDTVEKIVNLLNQNEIKAIKFIGQ------- 385

Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
            S      +T K Q + +E F+  + ++L +T V EEG+ +P+ +Y+I ++   +   +I
Sbjct: 386 ASKEKGKGMTQKEQIKAIEKFK-KEGSVLVSTSVSEEGIDIPSVNYIIFYEPVPSEIRFI 444

Query: 510 QSRGRA-RQHNSQFILMLERG 529
           Q RGRA R       +++ +G
Sbjct: 445 QRRGRAMRGEGGNVFILIAKG 465


>gi|254911056|ref|NP_001157171.1| retinoic acid-inducible gene-I [Salmo salar]
 gi|254692471|emb|CAX48607.2| retinoic acid-inducible gene-I [Salmo salar]
          Length = 962

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 113/220 (51%), Gaps = 24/220 (10%)

Query: 47  RIYQLKVFE-VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ ++ E V + +NT+    TG GKT++A+ + +     +K  G    ++F+A  V +
Sbjct: 269 REYQRELAEPVFQGKNTVICAPTGCGKTVVALAICE---HHLKVKGKGAKVVFMATKVDV 325

Query: 106 VHQQYDVIRVH-----TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
            +QQY + + H      D  +    G +G    D    +  +  ND++V+TPQIL++A+ 
Sbjct: 326 FNQQYKLFQDHFQEKDPDIRINGLCGNQG----DQLSMKVVMENNDIIVLTPQILVNAVA 381

Query: 161 KA-FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-------PKVFGMTASPVV 212
                SL     +++DECH+ TG HPY  IM  +     +K       P++ G+TAS  +
Sbjct: 382 GGEITSLSCFSLLILDECHNTTGKHPYNIIMTSYLDAKLSKEQSGQHLPQIVGLTASVGI 441

Query: 213 RKGVSSAMDCEGQISELESTLDSQVF-TIEDKT-EMEVFV 250
                +  + E  I +L ++LDS++  TI   T E++ +V
Sbjct: 442 -GSFKNQSEAENNICQLCASLDSRIISTIHTNTDELQSYV 480



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 9/145 (6%)

Query: 401 ELLQLFL--SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG-----STT 453
           ++LQ  L   + ++ +   ++FV     A  ++ ++++   L  L    L G     S  
Sbjct: 638 DMLQYILEEQYRQNDETKSVLFVRTRALADALKSWIEESDSLKFLKPGVLIGRGHKSSQL 697

Query: 454 SVDALTPKVQKEVLESFRG--GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
           +   +T   +K VL+SF+    +  +L AT V +EG+ +P C+ V+ ++    V   +Q 
Sbjct: 698 TGTRMTLNSKKGVLDSFKSFDNQSKILIATSVADEGIDIPQCNLVLMYEYVGNVVKMVQV 757

Query: 512 RGRARQHNSQFILMLERGNLKQRNK 536
           RGR R   S+ IL+ ++ +   + K
Sbjct: 758 RGRGRAQGSKCILVSDKKDRIDKEK 782


>gi|317156821|ref|XP_001826035.2| hypothetical protein AOR_1_660054 [Aspergillus oryzae RIB40]
          Length = 939

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 76/140 (54%), Gaps = 7/140 (5%)

Query: 80  IKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDS-QC 137
           ++ + ++++ N    LI FL PTV L +Q    I  H        +     VD W + + 
Sbjct: 24  VEMVNKSLEGNLIVVLIWFLCPTVALCNQHVRTITAHVPPMWCRSFTSNDNVDHWGTVET 83

Query: 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-- 195
           W   +    V + T Q+L DAL   F+++D +  I+ DE HH T +HP +KIM+E+YH  
Sbjct: 84  WNIALASVKVAISTYQVLYDALVHRFVTMDRLSLIIFDEAHHCTDDHPASKIMREYYHTE 143

Query: 196 -KSDNK--PKVFGMTASPVV 212
            +S +K  P + G+TASP++
Sbjct: 144 PQSHDKQTPYILGLTASPIL 163



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 120/274 (43%), Gaps = 38/274 (13%)

Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEI--NCHSRNFHIPSSLILEALTTLGCCES 1074
            +P    ++  L PS++ R+   ++A +LR++I  N  +  F     L+  AL+       
Sbjct: 487  LPSIYAEAALLAPSIIHRIGVYLIAEKLRKQIFSNPQAARFE-RMDLLCIALSPTDDMHR 545

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
                 +  +GD+++K+ ++  LFL +   HEG L++ +   V ++ L           Y+
Sbjct: 546  HEFRSMAFIGDAIVKFLITRQLFLHHTLWHEGLLTSVKDSIVSDTGLAAALCHSGFGSYL 605

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
              + F+ +RW        RP                  F   T   + K      R++G+
Sbjct: 606  ITTRFNGKRW--------RPS-----------------FVSTT---LSKSGPTRRRYVGA 637

Query: 1195 KTIADCAEALIGAYYVGGGL----IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPR 1250
             T+AD  +AL GA ++  GL    I A  M+    I +   +SL D   ++ S  S    
Sbjct: 638  ATVADMVKALAGAAFLDNGLDQAFICAAAMIP--KIKSWTTISLYDGTYSK-SRPSKSLG 694

Query: 1251 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFY 1284
             + I D+E+ +GY F+ K L  E++TH S    Y
Sbjct: 695  ASTIIDLEALLGYTFSDKSLAIESMTHPSCVGLY 728


>gi|70990412|ref|XP_750055.1| DEAD box helicase Mph1 [Aspergillus fumigatus Af293]
 gi|74669967|sp|Q4WKB5.1|MPH1_ASPFU RecName: Full=ATP-dependent DNA helicase mph1
 gi|189082420|sp|B0XMV6.1|MPH1_ASPFC RecName: Full=ATP-dependent DNA helicase mph1
 gi|66847687|gb|EAL88017.1| DEAD box helicase Mph1, putative [Aspergillus fumigatus Af293]
 gi|159130535|gb|EDP55648.1| DEAD box helicase Mph1, putative [Aspergillus fumigatus A1163]
          Length = 1101

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 113/517 (21%), Positives = 204/517 (39%), Gaps = 64/517 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  + +     N +  L TG GKT IA  ++ +  +  KS      IIF+APT  LV
Sbjct: 290 RDYQFNIAQRGLFHNLLVALPTGLGKTFIAATIMLNWYRWTKS----AQIIFVAPTKPLV 345

Query: 107 HQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            QQ         + R  T     E       +EW S+          V  MTPQ L++ L
Sbjct: 346 AQQISACFQVAGIPRSETTMLTGEAAPGIRAEEWKSKR---------VFFMTPQTLVNDL 396

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-VVRKGVSS 218
           +        +  +V+DE H ATG + Y +++K F  + +   +V  +TA+P    + V +
Sbjct: 397 KSGIADPKRIVLLVVDEAHRATGGYAYVEVVK-FLKRYNKSFRVLALTATPGSTVESVQA 455

Query: 219 AMDCEG------------QISELESTLDSQVFTIEDKTE----MEVFVPSAKESCRFYDQ 262
            +D  G             I E     D++V T ++  E    ME+F  + +      DQ
Sbjct: 456 IIDDLGIAKVEIRTEQSLDIREYVHARDTEVQTFQNSDEMVLCMELFTRTLQP---LVDQ 512

Query: 263 SKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD 322
            +   +   G+  ++ + F  + ++ Q    +  ++ +   K     +    A + + +D
Sbjct: 513 LRNLNA-YWGRDPMALTAFGLTKARQQWMGSDAGRNANLALKGKVNAIFTVLASLAHAID 571

Query: 323 ELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
               +  Y  +      +L  Q   +  +    Q +   +E    + + L    K     
Sbjct: 572 ----LLKYHGITPFYRHLLHFQSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWTK----- 622

Query: 383 GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQV---------LCIIFVERIIAAKVVERF 433
             D+     L Y+      +L  F+  G+ T             +IFV    +A+ V R 
Sbjct: 623 NPDFIGHPKLEYLK---QVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEVVRV 679

Query: 434 VKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           +K+   L    V     S    + +  K Q  +++ F+ G  N + AT + EEG+ +   
Sbjct: 680 LKRHEPLIRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGTYNTIVATSIGEEGLDIGEV 739

Query: 494 SYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
             ++ +D   +    +Q  GR  R+     +L+L +G
Sbjct: 740 DLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQG 776


>gi|89114034|gb|ABD61608.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 128/564 (22%), Positives = 225/564 (39%), Gaps = 98/564 (17%)

Query: 530  NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-TYVKTKSYIVESTGASVTTDSSVN 588
             + Q  ++  ++ S+ + T+       EA    AC    + K +++  TGASV   S++ 
Sbjct: 713  QMAQYREIEQMLLSKCANTEPPEQEQSEAERFSACLAAYRPKPHLL--TGASVDLGSAIA 770

Query: 589  LIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ-TIVGPTSRNKNL 643
            L+++YC  LPSD +     +++    E A    ++  L LP N+P +  IVG     + L
Sbjct: 771  LVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKHDIVGLPMPTQTL 830

Query: 644  SKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSENNLISKKNESLPG 688
            +++L  L+AC +LH++G L+D L P       ++E        EP +  ++   +E  PG
Sbjct: 831  ARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLSDEPRPG 890

Query: 689  AGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDND 748
              T +R+  +          R        L+  +    C I  E  +    +   E D  
Sbjct: 891  T-TKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPPE-DAQ 948

Query: 749  VGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAKCF----QELFFNGLFGKLFVKSK 803
             G   L    + K    ++ + SG+V +   +++K +      Q +  NG     F    
Sbjct: 949  QGFGILTTKRIPKLSAFSIFTRSGEVKVSL-ELAKERVILTSEQIVCINGFLNYTF---- 1003

Query: 804  SSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKS 863
                        TN L    ++ L  P    N                C  +V  +K  +
Sbjct: 1004 ------------TNVLRLQKFLMLFDPDSTEN----------------CVFIVPTVKAPA 1035

Query: 864  --------FLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAI 915
                    FL   Q N   GN+ P R  P K                D +  +D VV+  
Sbjct: 1036 GGKHIDWQFLELIQAN---GNTMP-RAVPDK---------ERQAQPFDPQRFQDAVVMPW 1082

Query: 916  HTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQ 971
            +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ + +  QPLL +  
Sbjct: 1083 YRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLTIQNTSQPLLDVDH 1139

Query: 972  SHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSL 1025
            +    N L     N  G     S + +K        Q  + + PEL      P S+ ++ 
Sbjct: 1140 TSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELCTVHPFPASLWRTA 1198

Query: 1026 YLLPSVMQRLESLMLASQLREEIN 1049
              LP ++ R+  L+LA  +R++++
Sbjct: 1199 VCLPCILYRINGLLLADDIRKQVS 1222



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1667 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1726

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L  Y+  + F+P   W+ P
Sbjct: 1727 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1755



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG-----STTSVDA-LTPK 461
           +  LC +I+  +   A+V+   + ++    P L  L   Y T      +T   +A L  +
Sbjct: 433 SDTLCALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHR 492

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   + 
Sbjct: 493 RQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAY 552

Query: 522 FILML 526
            ++++
Sbjct: 553 HVILV 557



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 52/209 (24%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI------------------------DADL 1230
            K+IADC EALIGAY +  G   AL  M WLG+                        +A+ 
Sbjct: 1844 KSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAEN 1903

Query: 1231 EVSLVDDCIT-RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             V++     T R+ L  + P   E         ++ E  +GY+F  +  L +A+THAS  
Sbjct: 1904 VVTVYGAWPTPRSPLLHFAPNATEELDHLLSGFEEFEESLGYKFRDRSYLLQAMTHASYT 1963

Query: 1282 EFY---CYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIV 1338
                  CYQ L          L   + +Y+ +           P   +P AL DL  ++V
Sbjct: 1964 PNRLTDCYQRL--------EFLGDAVLDYLIT-----RHLYEDPRQHSPGALTDLRSALV 2010

Query: 1339 GAVL---IDTKLNLDEVWRIFKPILSPIV 1364
               +   +  +    + +R   P L+ ++
Sbjct: 2011 NNTIFASLAVRHGFHKFFRHLSPGLNDVI 2039


>gi|25396065|pir||A88708 protein C01B10.1 [imported] - Caenorhabditis elegans
          Length = 956

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 123/575 (21%), Positives = 228/575 (39%), Gaps = 120/575 (20%)

Query: 44  FIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           F  R YQ ++ +VA + +NTI    TG+GKT+IA  +IK+  ++  S G +         
Sbjct: 228 FCLRNYQEELCQVALQGKNTIVTAPTGSGKTVIAANIIKEHFESRSSEGKR--------- 278

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL------ 156
                           F+ +   G+  V        +  I   D++V TPQ+++      
Sbjct: 279 ----------------FKTQTIQGSDNVPT------RNVIQSKDLIVATPQMIVNLCNEH 316

Query: 157 -DALRKAF----LSLDIVCFIVIDECHHATGNHPYTKIMKEFYH--------KSDNKPKV 203
            D L   +      L     I  DECH+   N PY+ +M+E+++        +  + P++
Sbjct: 317 RDPLDDEYPPEQFFLSTFTIIFFDECHNTVKNSPYSNVMREYHYLKNMGNMPEGHSFPQI 376

Query: 204 FGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI-----EDKTEMEVFVPSAKESCR 258
            G+TAS +      + M     I+ L + +D +  +I     E+  +   FV        
Sbjct: 377 IGLTAS-LGTGDKKNCMQVRSYIAGLCANMDVKELSIVKDNLEELLDHNPFVT------- 428

Query: 259 FYDQSKFCGSDLKGKLEVSWSKFDASLSKLQ----------------------------- 289
             DQ  FC     G +E+   +    + +++                             
Sbjct: 429 --DQVSFCERSNDGPIEMFTKRLKQMMQEVEDLIRTTLKNEPTVKYEIPPTDKEHNRYEN 486

Query: 290 --GSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY-EAVKICLEKVLKAQE- 345
              +Q NC      ++KTL  ++ D   K+ Y   ++ +   Y    +   +++ + Q+ 
Sbjct: 487 WISNQRNCVSLAGSRNKTLIIEVLDV-LKVQYMFSQMKIFWNYFRKYRFGFKRIFQFQDC 545

Query: 346 ----ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKL-H 400
                  I     +  K +LE+ L          D + L +   + + V +G     +  
Sbjct: 546 FYALSYNINFNPEVALKKYLEKELGP-ERIRNFTDNMNLIWDNCHRELVGIGSAENPMIA 604

Query: 401 ELLQLFLSFGKSTQVL-CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG---STTSVD 456
             +Q  L   + T     IIFV     A  +   +        +   +++G   ST S  
Sbjct: 605 RTVQFILDQNEQTSDFRAIIFVRTKKEADFLNYVLNDRLHELGIKSDWMSGQKKSTASSA 664

Query: 457 ALTPKVQKEV--LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
            ++   QK++  L+ F  G+  +L +T V EEG+ +P CS VI+++     ++++Q RGR
Sbjct: 665 DISASKQKQMEKLKMFADGENQILVSTSVAEEGLDIPECSLVIKYNYATNETAHVQRRGR 724

Query: 515 ARQHNSQFILML--------ERGNLKQRNKLFDII 541
           AR  NS+ +L+         E  NL + N + + I
Sbjct: 725 ARARNSKCVLITNSIALHVQESNNLAKENLMTETI 759


>gi|389747383|gb|EIM88562.1| hypothetical protein STEHIDRAFT_155914 [Stereum hirsutum FP-91666
           SS1]
          Length = 1722

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 134/617 (21%), Positives = 242/617 (39%), Gaps = 84/617 (13%)

Query: 88  KSNGFKKLIIFLAPTVHLVHQQYDVIR---VHTDFEVEEYYGAKGVDEWDSQCWQKEINK 144
           KS+   ++ +FL     L  Q +   R     T+  +E Y  +   D   S  WQ  +  
Sbjct: 177 KSSQTSRIALFLVEGESLETQPHVYARSLAASTNLRIESYSSSGDEDTQASNTWQDALTL 236

Query: 145 NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN--HPYTKIMKEFYHKSDNKPK 202
            DVLV++P  LL+ LR   + L  +  I + +      N  HP  ++M EFY  ++   +
Sbjct: 237 -DVLVLSPMHLLELLRTGIVDLAQLHTIYLRDARPIKDNDLHPMNRVMAEFYMPAEENLR 295

Query: 203 VFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAK--ESCRFY 260
                  P +   +   +  + ++ +LE  L S+V  + D     +     +  E   FY
Sbjct: 296 -------PRIVACLPEHLPFDARMLKLEQILCSKVCGVSDDIREYILAMPDRPTELVVFY 348

Query: 261 DQ-SKFCGSDLKGKL---EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAK 316
           ++ SK+  + L  +L   +   S F    S  + + +       D     R+        
Sbjct: 349 ERASKYSYTLLYRQLRNIDPEESIFPRLFSAARHTLVEVGPAASDL--VWRR-------- 398

Query: 317 ILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLAD 376
               L E+ +  A        +++L  + E  +  + +++   F          A+P  D
Sbjct: 399 ---ALPEIEMTSAVNDDDEEEDEILSPEAEAALRIRDTIKNWVF----------AMPNLD 445

Query: 377 KIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436
                     S+  ++     KL  +L+   ++G + +   I+FV+R   A V+      
Sbjct: 446 P--------SSRGFNVMPKFLKLVHVLRSCRAYGDAFR--GIVFVQRRAVALVM------ 489

Query: 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKE--VLESFRGGKVNLLFATDVIEEGMHVPNCS 494
           V  L  L + YL             +Q E  ++++F  G  NLL AT   E+ + +P  S
Sbjct: 490 VDLLRTLDMGYLRPHALVGHGNYGPLQSETEIVQAFGMGTYNLLIATKCGED-IDLPRAS 548

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTA--L 552
            V+R+DL ++  SY  SR R R   S  + M++RGN   R  L  + +  R +   A  +
Sbjct: 549 LVVRYDLFESQVSYGYSRARTRGRESHLVHMIQRGNDTHRRMLTHLTQLSRPMHLWAEKV 608

Query: 553 SRDPEACFLKACTYVKTKSYIVES--------------TGASVTTDSSVNLIHRYCEM-- 596
           +  PE        +     Y+ +S              T   +    + ++I++      
Sbjct: 609 AAGPEGAVPPTILHETHDPYLSDSEDEDEPDSYIKDPTTSGRIRLQDATSVIYQVAASAR 668

Query: 597 -LPSDKY-YTPKPIFKYKSAEEAYE---CELTLPSNAPFQTIVGPTSRNKNLSKQLVCLE 651
            + +D   Y P   F+  +   AY    C +TLP     +T  G  S + + +++  C E
Sbjct: 669 GVTTDAVEYQPLFGFEEVATNSAYPRVVCTVTLPEGPAIRTFRGGPSSSFSQARRTACFE 728

Query: 652 ACEKLHQVGALNDHLLP 668
            C  L   G L+ H  P
Sbjct: 729 TCSGLFHAGLLDYHFFP 745



 Score = 77.4 bits (189), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 100/229 (43%), Gaps = 19/229 (8%)

Query: 935  PFDGNTDDDSKTFVNYFSE--KYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGS 992
            P D   ++    FV Y  E  K    L +  QPL+ + +     N+L            +
Sbjct: 984  PVDSPREEGYDNFVEYCKEHRKNFQGLRNYDQPLIEVGRVGVVMNVL---------NPVT 1034

Query: 993  KSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHS 1052
            K      KP +  ++ PEL  +  +  S  ++  LLPS+ +R+E L+L  +L      HS
Sbjct: 1035 KQSTPPTKPDVK-YLIPELCCKFTIAASTFRTALLLPSITRRIEDLLLVKELNASFFDHS 1093

Query: 1053 -RNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
               +H+ +     A++       F  ERLELLGD+ LKY  S +LF+T P +HEG L + 
Sbjct: 1094 ISEYHLHA-----AISAPSASVEFDYERLELLGDAYLKYLSSIYLFVTNPSQHEGALHSA 1148

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECG 1160
            R   + N  L        L  +++   F  + W  P    + P P   G
Sbjct: 1149 RLRIISNKALLHNADAAGLPPFVQAKTFVAKFW-QPPYFEVLPTPLAAG 1196



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 15/114 (13%)

Query: 1186 DMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLR 1245
            + G  W+G KT+AD AEA++GA YV GG  AAL   K L I     V  VD   +    +
Sbjct: 1314 EQGIHWLGDKTVADVAEAIVGAAYVTGGREAALKASKALCI----AVPRVDRW-SDFGRK 1368

Query: 1246 SYVP--------RINEIKDIESKIGYEFTVKFLLQEAITHASVQ--EFYCYQNL 1289
            +  P        R   I+ +E+ +G++F    LL +A+TH S+Q  E   Y+ L
Sbjct: 1369 ALAPPPDVTARLRAGSIEAVEAILGHKFERPHLLAQALTHGSIQGYEITSYERL 1422


>gi|221041528|dbj|BAH12441.1| unnamed protein product [Homo sapiens]
          Length = 578

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 124/525 (23%), Positives = 225/525 (42%), Gaps = 71/525 (13%)

Query: 47  RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           R YQ +V   A + +N I  L TGAGKT  A  + K   + +  +G K         VHL
Sbjct: 4   RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK---------VHL 52

Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
           V Q  +  R   D  + V    G  G        +      +D+L+ T ++L  AL    
Sbjct: 53  VTQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTSPE 108

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF----YHKSDNKPKVFGMTASPVVRKG 215
            +  + L +   IV+DECHH   +  Y  IM ++      ++   P+V G+TASP    G
Sbjct: 109 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP----G 164

Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
              A   +G I+   +L + LD+    +  +         +++ C+ Y+       D  G
Sbjct: 165 TGGASKLDGAINHVLQLCANLDTWCI-MSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 223

Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
            L          L KL   Q++ + +M +  +    Q+  Y  +++  L E   +   + 
Sbjct: 224 DL----------LKKLM-DQIHDHLEMPELSRKFGTQM--YEQQVVK-LSEAAALAGLQE 269

Query: 333 VKICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
            ++    + +  +   I+         ++LQ  Y  E   HV  + +  A++  L   FD
Sbjct: 270 QRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE---HVTKTQILCAERRLLAL-FD 325

Query: 386 YSKAVDLGYISTK---------LHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436
             K  +L +++T          L ++LQ   S   S + +      +   + ++    ++
Sbjct: 326 DRKN-ELAHLATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQ 384

Query: 437 VPFLTHLTVAYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494
                 +    L G+  S  +  +T + Q+EV++ F+   +NLL AT V EEG+ +P+C+
Sbjct: 385 GLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDRTLNLLVATSVAEEGLDIPHCN 444

Query: 495 YVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539
            V+R+ L     S +Q+RGRAR   S +  +   G+ + + +L +
Sbjct: 445 VVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELIN 489


>gi|2127880|pir||H64487 eIF-4A family probable ATP-dependent RNA helicase homolog -
           Methanococcus jannaschii
          Length = 784

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 224/497 (45%), Gaps = 62/497 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQ  +   A ++ T+ VL TG GKT IA+++I  I    K +G    ++ LAP+  LV
Sbjct: 22  RLYQQIIAANALKKKTLCVLSTGLGKTAIAILVIAGILT--KKDG---KVLILAPSRPLV 76

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            Q Y+ ++   + + ++     G  +   +   +   K  + + TPQ++ + +    +++
Sbjct: 77  EQHYNRLKQVLNIDEDKIIALTG--KIQPKKRAELYKKGKIFIATPQVIENDIIAGRINV 134

Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQI 226
           D    ++ DE HH TG+H Y  + K+F     +K  + G+TASP       S +D   +I
Sbjct: 135 DEFILLIADEAHHTTGDHAYAFVAKKF----KDKCHILGLTASP------GSDIDKVMEI 184

Query: 227 SELESTLDSQVFTIEDKTEMEVFVPSAK-------ESCRFYDQSKFCGSDLKGKLEVSWS 279
            E       +V T ED  +++ ++   K           F    K     LK +L++   
Sbjct: 185 CENLGIEHVEVRT-EDDEDVKPYIAKVKLIPIRIDLPNEFKRALKLINEALKERLKILK- 242

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE- 338
             DA +       +N   D+       + +L + + K L+  DE      YE +K+C E 
Sbjct: 243 --DAGV-------INSIADVT------KTELIELNNK-LFSYDEE---VKYELIKVCSEA 283

Query: 339 -KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397
            K++ A+E  E  +  S+   Y  +  +    SA  + +   +    +     D+ +   
Sbjct: 284 LKLMHAKELLE-SQGKSVFLNYINKLSMQRTKSAKSIVNDEKVREAVNLLMKSDVEHPKL 342

Query: 398 -KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH---LTVAYLTGSTT 453
            K+ ++++  L   K  ++        II A+  +   K V  LT      + ++  +  
Sbjct: 343 GKVVDMVKNILEKNKDERI--------IIFAQYRDTVEKIVNLLTQNGIKAIRFIGQANK 394

Query: 454 SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
               ++ K Q E +E F+  + ++L +T V EEG+ +P+ +Y+I ++   +   +IQ RG
Sbjct: 395 EGKGMSQKEQIEAIERFK-KEGSVLVSTSVSEEGIDIPSVNYIIFYEPVPSEIRFIQRRG 453

Query: 514 RA-RQHNSQFILMLERG 529
           RA R    +  +++ +G
Sbjct: 454 RAMRGEGGKVYVLIAKG 470


>gi|15669699|ref|NP_248512.1| Hef nuclease [Methanocaldococcus jannaschii DSM 2661]
 gi|3915469|sp|Q58900.2|Y1505_METJA RecName: Full=Putative ATP-dependent RNA helicase MJ1505
 gi|2826423|gb|AAB99518.1| ATP dependent RNA helicase, putative [Methanocaldococcus jannaschii
           DSM 2661]
          Length = 778

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 224/497 (45%), Gaps = 62/497 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQ  +   A ++ T+ VL TG GKT IA+++I  I    K +G    ++ LAP+  LV
Sbjct: 16  RLYQQIIAANALKKKTLCVLSTGLGKTAIAILVIAGILT--KKDG---KVLILAPSRPLV 70

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
            Q Y+ ++   + + ++     G  +   +   +   K  + + TPQ++ + +    +++
Sbjct: 71  EQHYNRLKQVLNIDEDKIIALTG--KIQPKKRAELYKKGKIFIATPQVIENDIIAGRINV 128

Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQI 226
           D    ++ DE HH TG+H Y  + K+F     +K  + G+TASP       S +D   +I
Sbjct: 129 DEFILLIADEAHHTTGDHAYAFVAKKF----KDKCHILGLTASP------GSDIDKVMEI 178

Query: 227 SELESTLDSQVFTIEDKTEMEVFVPSAK-------ESCRFYDQSKFCGSDLKGKLEVSWS 279
            E       +V T ED  +++ ++   K           F    K     LK +L++   
Sbjct: 179 CENLGIEHVEVRT-EDDEDVKPYIAKVKLIPIRIDLPNEFKRALKLINEALKERLKILK- 236

Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE- 338
             DA +       +N   D+       + +L + + K L+  DE      YE +K+C E 
Sbjct: 237 --DAGV-------INSIADVT------KTELIELNNK-LFSYDEE---VKYELIKVCSEA 277

Query: 339 -KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397
            K++ A+E  E  +  S+   Y  +  +    SA  + +   +    +     D+ +   
Sbjct: 278 LKLMHAKELLE-SQGKSVFLNYINKLSMQRTKSAKSIVNDEKVREAVNLLMKSDVEHPKL 336

Query: 398 -KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH---LTVAYLTGSTT 453
            K+ ++++  L   K  ++        II A+  +   K V  LT      + ++  +  
Sbjct: 337 GKVVDMVKNILEKNKDERI--------IIFAQYRDTVEKIVNLLTQNGIKAIRFIGQANK 388

Query: 454 SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
               ++ K Q E +E F+  + ++L +T V EEG+ +P+ +Y+I ++   +   +IQ RG
Sbjct: 389 EGKGMSQKEQIEAIERFK-KEGSVLVSTSVSEEGIDIPSVNYIIFYEPVPSEIRFIQRRG 447

Query: 514 RA-RQHNSQFILMLERG 529
           RA R    +  +++ +G
Sbjct: 448 RAMRGEGGKVYVLIAKG 464


>gi|281205109|gb|EFA79302.1| hypothetical protein PPL_07720 [Polysphondylium pallidum PN500]
          Length = 3481

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 15/180 (8%)

Query: 49  YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDI----AQAIKSNGFKKLIIFLAPTVH 104
           +Q++    A +RNTI V+ TG GKT+++++L+K +     + +     K++I+F+A  V 
Sbjct: 248 FQIETLYRATKRNTILVVPTGYGKTIVSILLMKQLHPLNGRLLNEMTAKRMILFVADRVP 307

Query: 105 LVHQQYDVIRVH--TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
           LV QQ   I+ H  ++F V   +  +  D   +      + + DVLV T   +L+ L   
Sbjct: 308 LVRQQCAAIQYHVGSEFVVSSIHSGERSDFQSAN-----VRRPDVLVCTSDSILNLLHGK 362

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN--KPKVFGMTASPVVRKGVSSAM 220
            L       +V DE HH  G+H Y+++ K      D   +P++FGMTASP    G  S M
Sbjct: 363 VLKPIDFYLVVFDEAHHCGGSHSYSRLAKLLQSIGDERLRPRIFGMTASPTT--GTRSNM 420



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 106/216 (49%), Gaps = 13/216 (6%)

Query: 397 TKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVD 456
           TKL +LL+  +    +  +  IIFV+       V R +KK  F + L    L G   +  
Sbjct: 609 TKL-KLLEEIIEQNLNDSLSAIIFVQTKTTVSSVLRALKKKHFNSFLHAKKLIGHYMADG 667

Query: 457 ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516
            +  + Q+E+L  F+  +  LL AT V+EEG+ +P C+ +I FD    + S IQ RGRAR
Sbjct: 668 GMDLEEQQEILAKFKDNECRLLVATSVLEEGIDIPACNLIICFDDDLQLRSLIQRRGRAR 727

Query: 517 QHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC-----FLKACTYVKTKS 571
             NS+F +  +  +    N+L ++   E S+  T +S + +       F       K +S
Sbjct: 728 SANSKFYVFKQYSD---PNRLKNLAYREVSMQKTIVSLNRKHQRKADKFDSRDILQKYQS 784

Query: 572 YIVESTGA---SVTTDSSVN-LIHRYCEMLPSDKYY 603
           YIV +  A   ++  ++SVN LI  +  + P   YY
Sbjct: 785 YIVSNMIALDGTLVDNTSVNTLIFIFYYVSPDVDYY 820


>gi|156548982|ref|XP_001607217.1| PREDICTED: hypothetical protein LOC100123563 [Nasonia vitripennis]
          Length = 1498

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 138/524 (26%), Positives = 220/524 (41%), Gaps = 81/524 (15%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           N+  R YQ  + + A   NT+  L TG GKT IA +++ +  +       +  ++FLAPT
Sbjct: 37  NYPRRDYQFSIVQTALYNNTLVCLPTGLGKTFIAAVVMYNFWRWYP----RGRVVFLAPT 92

Query: 103 VHLVHQQ----YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158
             LV QQ    ++++ + ++  VE       V     Q W   I K  V+  TPQ     
Sbjct: 93  KPLVAQQIEACHEIMGIPSEETVELTGAINQVKR--KQAW---IQKR-VVFATPQTFQKD 146

Query: 159 LRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-----VVR 213
           L+   +   ++  IVIDE H A G H Y +I++    K+    ++  ++A+P      VR
Sbjct: 147 LQNDIVPCQLIKCIVIDEAHKALGKHSYCEIVRMMSDKTKFF-RILALSATPGSKIDHVR 205

Query: 214 KGVSSAMDCEGQISELESTLDS--QVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLK 271
           + + + +     ISELE   DS   +    +   ME  +                G+DL 
Sbjct: 206 EVIQNLL-----ISELELRDDSSPDITPYTNDRSMEKIIVG-------------LGTDLT 247

Query: 272 GKLEVSWSKFDASL------SKLQGSQLNCYKD---MDDKHKTLRKQLSDYHAKILYCLD 322
              +   +  D  +        LQ +  N  K    M  K    R Q S+ H  I+  L+
Sbjct: 248 NYKDRYVNIMDPHVRILVKNKILQTNTANISKGRIFMLLKQCESRPQKSNNHGIIMKTLN 307

Query: 323 ELGLICAYEAVKICLEKVLKA------QEECEIYRQSSLQCKYFLEEVLHVIGS---ALP 373
              L+  Y A ++ ++  L+A          + +  S L  +  LE++   IG      P
Sbjct: 308 --ILLTMYHAYELLVKHGLRAFYNFYITHSDKFWLDSELDLQLLLEDIKRYIGEFPVIHP 365

Query: 374 LADKIFLDFGFDYSKAVDLGYIS-TKLHELL----QLFLSFGKSTQVLCIIFVE-RIIAA 427
           L D    D   D    +  G+    KL ELL    + F +  KST+   I+FVE R I  
Sbjct: 366 LPDGTIPDIPSD----LKFGHNKFDKLRELLTDHFRSFAAQNKSTR--AIVFVEYRDIVN 419

Query: 428 KVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEG 487
           +V    ++  P +         G          K Q   LE FR  KVN+L +T V EEG
Sbjct: 420 EVYVLLLQTRPLIRPQMFVGQAGQKQ-------KEQLAALEDFRNDKVNVLISTSVGEEG 472

Query: 488 MHVPNCSYVIRFDL-PKTVSSYIQSRGR-ARQHNSQFILMLERG 529
           + V     +I FD+   T +  +Q  GR  R+ + + +++L  G
Sbjct: 473 LDVGEVDLIICFDISSSTPTRLVQRMGRTGRKRSGRVVILLTEG 516


>gi|452825107|gb|EME32106.1| ATP-dependent RNA helicase-like protein [Galdieria sulphuraria]
          Length = 1137

 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 119/529 (22%), Positives = 212/529 (40%), Gaps = 81/529 (15%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           N   R YQ  +   A   NT+  L TG GKT IA +++ +  +          ++F+APT
Sbjct: 236 NIPEREYQFNIVRSALACNTLVCLPTGLGKTFIAAVVMYNFLRWYPDGK----VVFMAPT 291

Query: 103 VHLVHQQ----YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158
             LV QQ    Y V+ +  +    E  GA    E     W+ +    +V  +TPQ++ + 
Sbjct: 292 KPLVRQQIAACYRVVGIPIE-STAEITGAMKT-EVRKTMWKSK----NVFFVTPQVMKND 345

Query: 159 LRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSS 218
           +         V  +V DE H ATG + Y  ++++    +    ++  ++A+P     V  
Sbjct: 346 IDHGICPASKVICVVFDEAHKATGKYVYCSLVEDLNKATGGSYRILALSATPGNTISVIQ 405

Query: 219 AMDCEGQISEL----ESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274
            +    QI+++    E   D++ +T   + E  + VP               G+DL+G  
Sbjct: 406 QVIDNLQIAKVEFRSEDDPDTKPYTFHRQIE-SIIVP--------------LGADLQGAK 450

Query: 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKH--------KTLRKQLSDYHAKILYCLDELGL 326
           +++       L+ L  +Q   Y+   ++H        +    Q  + HAK  + L +  L
Sbjct: 451 DLAMDLLSPFLNNLCNNQA-FYERCAERHVCYYXTWKQKFTPQTKEDHAKRSFVLSQFSL 509

Query: 327 ICAYEAVKIC-------------LEKVLKAQEECEIYRQSSLQCKYFLEE---VLHVIGS 370
                AV +C              +  L++ E     R   L+ +    E    L  I S
Sbjct: 510 -----AVSLCYGINLLYSHGLAPFDSFLESFESESKQRTGGLKKQIANREKFKQLRSITS 564

Query: 371 AL-------PLADKI--FLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFV 421
            L       P A K    L   F  +     G++  K      +F  + +S     ++ +
Sbjct: 565 ELISRGVTHPKALKCVEVLKHHFSETSTPCSGFVEGKSSTRAIVFAQYRES-----VVEL 619

Query: 422 ERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFAT 481
            RI+A    E  +  + F+     A  +  +     ++ K Q EVL  FR G  N+L +T
Sbjct: 620 RRILAQ--YEPLIHAMCFVGQAPSAN-SHKSQKTSGMSQKEQIEVLREFRKGTFNVLVST 676

Query: 482 DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
            + EEG+ + +   +I +D+  +    +Q  GR  R    Q +++L  G
Sbjct: 677 SIGEEGLDIADVDLIISYDVISSPIRMLQRMGRTGRARAGQIVVLLTEG 725


>gi|167046022|gb|ABZ10542.1| dicer-like protein B [Placozoa sp. DMJ-2008]
          Length = 357

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 116/238 (48%), Gaps = 24/238 (10%)

Query: 1063 LEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1122
            L+ALT     + F++E LE LG S LKYAVS   FL+Y K HEGQLS+ +S  V N  L+
Sbjct: 1    LKALTLARANDDFNLETLEFLGGSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENLY 60

Query: 1123 KLGTDRKLQGYIRDSAFDPRR-WVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVV 1181
            ++G    L GYI     D    WV PG  S+       G   LE  L     +  ++V  
Sbjct: 61   QIGIKMGLPGYIIGHNVDQNDIWVPPG-FSIAKKSDSIG---LEEQLSTLNLSMTSRV-- 114

Query: 1182 GKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAA-LYMMKWLGIDA---DLEVSLVDD 1237
              P     + + +K IAD  EAL+G   +  G  +A  ++   LGI        ++ +DD
Sbjct: 115  -HPT----QKLKNKCIADVMEALLGGILLELGENSANNFITNNLGIKVGRLSHNIAKLDD 169

Query: 1238 CITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS------VQEFYCYQNL 1289
               +   + Y    + +KD+E+ +GY F  + LL  A+THA+       +   CYQ L
Sbjct: 170  DARKEISKIY--NAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRL 225


>gi|379055839|emb|CCD32423.1| dicer-1b, partial [Acyrthosiphon pisum]
          Length = 190

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 77/154 (50%), Gaps = 22/154 (14%)

Query: 1054 NFHI-PS-SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
            N+H  PS S++L+ALTT    + + +ERLE +GDS LKYAV+ +L+ T+   HEG LS  
Sbjct: 57   NYHPGPSPSILLQALTTANAIDGYDLERLETIGDSFLKYAVTAYLYCTHNNVHEGILSDL 116

Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGK 1171
            RS  V N  L++LG  +     +  + F+PR    P        PC  G   LE      
Sbjct: 117  RSNHVSNLNLYRLGKLKMFGERMISTKFEPRSNWLP--------PCYIGPHKLE------ 162

Query: 1172 FFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALI 1205
                  K V+     +       K+IADC EALI
Sbjct: 163  ------KAVINSNISITQHITNDKSIADCVEALI 190


>gi|367055364|ref|XP_003658060.1| hypothetical protein THITE_2033760, partial [Thielavia terrestris
           NRRL 8126]
 gi|347005326|gb|AEO71724.1| hypothetical protein THITE_2033760, partial [Thielavia terrestris
           NRRL 8126]
          Length = 1118

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 19/226 (8%)

Query: 463 QKEV---LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
           QKE    L++FR G +NLL AT V+EEG+ VP C+ VI FD  + + S+IQ RGRAR   
Sbjct: 351 QKEYILSLQAFRKGTINLLVATSVLEEGIDVPACNLVICFDRLENLKSFIQRRGRARMSA 410

Query: 520 SQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGA 579
           SQ  L++E  + K      D+ R  +   +  +  + E   ++    +       + TGA
Sbjct: 411 SQLYLLVEDDSDKSSRIWLDLEREMKRKYEDDMRENKELEEIEKSDVLDYPVLRDDKTGA 470

Query: 580 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE----EAYE-----CELTLP-SNAP 629
            +T   +   +  +C  L + K+    P +     E    +A +       + LP S AP
Sbjct: 471 QITIQDAKQHLEHFCATLSTRKFVDWSPFYVVHDLEGNPIDARQRGLRKATVHLPVSLAP 530

Query: 630 ----FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVE 671
               F++I    S   N  K     +A  KL++VG +N HLLP  E
Sbjct: 531 ELRCFESIYAWPS-EANACKD-AAFQAYAKLYEVGLVNRHLLPIRE 574



 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 120/279 (43%), Gaps = 44/279 (15%)

Query: 1009 PELLVRVD-VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALT 1067
            P   +RVD VP        L+P+++  LE+ ++A  L E  +   R      SL++ A++
Sbjct: 807  PASRLRVDSVPAVYAHVGLLIPAIVHALEAHLVAKDLLE--SRLERTGITDLSLVVMAIS 864

Query: 1068 TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTD 1127
            T         ER+E LGDS+LK+  + +    Y K  EG LS  +   V NS L +   +
Sbjct: 865  TSAARGPTDYERIEFLGDSILKFCTTINCAAKYLKYPEGCLSPLKDKIVSNSRLFRAAVE 924

Query: 1128 RKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM 1187
              L  YI        +W        RP   E   D LE P                P   
Sbjct: 925  FGLDRYIVHKTLTLHKW--------RPTYVE---DLLENP----------------PPAT 957

Query: 1188 GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMM-------KWLGIDADLEVSLVDDCIT 1240
              R + +KT+AD  EALI A Y+ GG+  AL  M       +W  I+   E+        
Sbjct: 958  RTRMLSTKTLADVVEALIAASYISGGIPKALACMSLFLPEFEWKSIEQGREI-----LYN 1012

Query: 1241 RASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
             A     +P    ++ +ES IGY FT K LL EA+TH S
Sbjct: 1013 EAPHDEPLP--VTMRPLESLIGYTFTKKALLVEAMTHPS 1049



 Score = 50.4 bits (119), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 39/147 (26%)

Query: 98  FLAPTVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQ--CWQKEINKNDVLVMTPQI 154
           FLAPTV L  QQ++VIR      +     GA  VD W ++   W   +    ++V     
Sbjct: 4   FLAPTVSLAEQQFEVIRAQIPSVQSRLIRGADNVDAWSTRPGVWDAVLRNTRIVVAA--- 60

Query: 155 LLDALRKAFLSLDIVCFIVIDEC--HHATGNHPYTKIMKEFYHKSDNK----PKVFGMTA 208
                               D C  H+  G +   ++M+E Y  +  K    P + G+TA
Sbjct: 61  --------------------DLCVAHNPVGKNSVARLMREHYFPNKAKGLPVPHILGLTA 100

Query: 209 SPVVRKGVSSAMDCEGQISELESTLDS 235
           SP++   +       G +  LE TLD+
Sbjct: 101 SPLMTSNL-------GDLEVLEQTLDA 120


>gi|328698487|ref|XP_001948012.2| PREDICTED: hypothetical protein LOC100166297 [Acyrthosiphon pisum]
          Length = 2033

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 126/509 (24%), Positives = 207/509 (40%), Gaps = 59/509 (11%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           NF  R YQ+ + + A   NT+  L TG GKT IA +++ +  +          IIF+APT
Sbjct: 172 NFPVREYQMGIIKTALFHNTLVSLPTGMGKTFIAAVVMYNFYRWYPMGK----IIFMAPT 227

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKG--VDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
             LV QQ +          E  +   G    E     W    NK  V  +TPQ+L + L 
Sbjct: 228 RPLVAQQIEACHSIMGIPREMTFEMTGNIPPEQRYLAW----NKYRVFFLTPQVLANDLS 283

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKP-KVFGMTASPVVRKGVSSA 219
                 D    I++DE H AT ++ Y +++K      +NK  ++ G++A+P       + 
Sbjct: 284 LNKCPSDTFRCIIVDEAHRATKDYAYVQVLKRL--SEENKVIRIVGLSATPGTNVEAVTE 341

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279
           +     IS+LE   D      +   + +V   S K +            D++ +  + + 
Sbjct: 342 VIRNLNISKLEFRTDESPDVAKYTNKKDVECISVKLTNTIL--------DIRTQFLMIYD 393

Query: 280 KFDASLSKLQG-----SQLNCYKDMDDKHKTL-RKQLSDYHAKILYCLDELGLIC----- 328
           K+   L +        + L  ++    K K L      D    ++ CL     IC     
Sbjct: 394 KYLKRLKQYHALNGNVANLTKFQIFTAKQKFLTSNNARDMPKSLIGCLINDFTICMSLAY 453

Query: 329 AYEAVKICLEKV--LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
           A E + I   KV  L++ E  E ++  S    +  + +LH I   L              
Sbjct: 454 ALELLTIYGVKVFYLQSLEMKETHKCLSNDADF--QNLLHGINKEL-------------- 497

Query: 387 SKAVDLGYISTKLHEL---LQLFLSFGK-STQVLCIIFVE-RIIAAKVVERFVKKVPFLT 441
             + DL +   KL EL   +Q +  F         IIF + R++  +V E    K    +
Sbjct: 498 -NSQDLTWSHPKLFELKKIVQNYFGFKNVEASSKIIIFCQYRLVVVEVFELL--KTFGSS 554

Query: 442 HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501
              V ++  S      L  K Q EV+  F+ G  N+L AT V EEG+ + +   +I  + 
Sbjct: 555 VKPVMFVGQSLKEKGGLRQKEQLEVMSRFKSGDFNVLIATSVAEEGLDIGDVDLIICLEA 614

Query: 502 PKTVSSYIQSRGR-ARQHNSQFILMLERG 529
            K+   ++Q  GR  R+ + + I +L  G
Sbjct: 615 NKSPIKFVQRLGRTGRKRSGKCITLLTEG 643


>gi|33359440|ref|NP_877878.1| ERCC4-like helicase/ERCC4-type nuclease [Pyrococcus horikoshii OT3]
 gi|3258336|dbj|BAA31019.1| 650aa long hypothetical ATP-dependent RNA helicase [Pyrococcus
           horikoshii OT3]
          Length = 650

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 8/165 (4%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR+YQ  ++   K RN + VL TG GKT+IA M+I D     + + +   ++ LAPT  L
Sbjct: 13  PRLYQELIYAKCKERNCLIVLPTGLGKTIIA-MMIADY----RLDKYGGKVLMLAPTKPL 67

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V Q  +  R       E+     G  E       +   +  V++ TPQ + + L    +S
Sbjct: 68  VLQHAETFRKFFTLPPEKIVALTG--EISPNERVRAWARAKVVIATPQTIENDLLVGRIS 125

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
           L+ V  I+ DE H A GN+ Y  I KE+  ++ N P V G+TASP
Sbjct: 126 LEDVTLIIFDEAHRAVGNYAYVYIAKEYLKQAKN-PHVIGLTASP 169



 Score = 46.6 bits (109), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 11/119 (9%)

Query: 417 CIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVD--ALTPKVQKEVLESFRGG 473
            I+F   R  A KVVE  +K       +      G  +  +   ++ K QK +L++F   
Sbjct: 367 IIVFTNYRETAKKVVEELMK-----DGIKARRFVGQASRENDRGMSQKEQKLILDAFARS 421

Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFD-LPKTVSSYIQSRGR-ARQHNSQFILMLERGN 530
           + N+L AT V EEG+ VP    VI ++ +P  + S +Q RGR  RQ   + ++++ +G 
Sbjct: 422 EFNVLVATSVGEEGLDVPEVDLVIFYEPVPSAIRS-VQRRGRTGRQKPGRVVILMAQGT 479


>gi|393226114|gb|EJD33934.1| P-loop containing nucleoside triphosphate hydrolase protein
           [Auricularia delicata TFB-10046 SS5]
          Length = 574

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 125/544 (22%), Positives = 223/544 (40%), Gaps = 79/544 (14%)

Query: 42  INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
           +N   R YQ  + + A  +NT+  L TG GKT IA +++ +  +   +      IIFL P
Sbjct: 17  LNRPKRTYQFSIVQAALLKNTLVALPTGLGKTFIAGVVMLNYWRWFPTGK----IIFLCP 72

Query: 102 TVHLVHQQYDVIRVHTD-----FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
           T  LV QQ  ++  H        +  E +G + +    +  W+++     V  MTPQ L 
Sbjct: 73  TKPLVAQQ--IVACHNTCGIPGSDATEMHG-EILKVKRAHLWEQK----RVFYMTPQTLK 125

Query: 157 DALRKAFLSL-DIVCFIVI-DECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRK 214
           + L    + L DIV  +++ DE H ATG H YT  +++   K +   ++  +TA+P   K
Sbjct: 126 NDLTAEIMDLRDIVLMVIVPDEAHKATGAHAYTTTVRDITEK-NPACRILALTATPSSDK 184

Query: 215 GVSSAMDCEGQISEL----ESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269
                +    +I  +    E++LD S     ++K E+ +  P    S R    +    S 
Sbjct: 185 DKIQPIIDALRIGHIEIRNETSLDISPYIKRKEKREIVIRFPPHLASLR-DSLANIMLSM 243

Query: 270 LK----GKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELG 325
           LK    G++  S          +Q S L   K+         + L+D H+ +   ++ L 
Sbjct: 244 LKLLRNGEIPGSLDPLHVRPFTIQ-SALGNMKNQPGSAAWTCRILNDLHS-LATAMNRLE 301

Query: 326 LICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
              AY           K Q     Y ++                   P   K+  DF  +
Sbjct: 302 GFGAY-----------KHQRTLPAYTKT-------------------PDYKKLLQDFTNE 331

Query: 386 YSKAVDLGYISTKLHELLQLFLSF-------GKSTQVLCIIFVE-RIIAAKVVERFVKKV 437
             +      +  K+ +L +L L +         S     I+FV  R    ++VE    + 
Sbjct: 332 KKRGT---LVHPKMQKLRELLLDYFGAPVAGSSSATQKAIVFVSLRSCVDEIVEYLTGEE 388

Query: 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
           P  T     ++   T +       + +++++ F+   VN+L +T + EEG+ +     +I
Sbjct: 389 P--TIRPARFVGQGTDNKGGKGILISQQLIQQFQSSNVNVLISTSIGEEGLDIGEVDLII 446

Query: 498 RFDLPKTVSSYIQSRGR-ARQHNSQFILML----ERGNLKQRNKLFDIIRSERSVTDTAL 552
            ++ P +    +Q  GR  RQ + Q IL++    E GN  +  + ++ ++S        L
Sbjct: 447 CYETPSSPIRGLQRAGRTGRQRDGQLILLMTENREEGNWTKAQEKYEQVQSAIQSAHYKL 506

Query: 553 SRDP 556
            +DP
Sbjct: 507 HQDP 510


>gi|195443910|ref|XP_002069632.1| GK11626 [Drosophila willistoni]
 gi|194165717|gb|EDW80618.1| GK11626 [Drosophila willistoni]
          Length = 2281

 Score = 85.5 bits (210), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 154/395 (38%), Gaps = 105/395 (26%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1749 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1808

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQLSLRPVPCECGVDTLEVP---------LD 1169
             L++LG  ++L  Y+  + F+P   W+ P      P   E  +   ++P         LD
Sbjct: 1809 NLYRLGRRKRLGEYMIATKFEPHDNWLPP--CYYVPKELEKALIEAKIPTHHWKLADLLD 1866

Query: 1170 GKFFTQ------------------DTKVVVGK------------PCDMGHRWMGSKTIAD 1199
             K  +                   D +   G              C + +  +   +I D
Sbjct: 1867 IKNLSSVQICELVREKAEALGLGIDQRAPNGHQLDDSNESCNDFSCFIPYNLVSQHSIPD 1926

Query: 1200 -----CAEALIGAYYVGGGLIAALYMMKWLGI---------------------------- 1226
                 C EALIGAY +  G   AL  M WLGI                            
Sbjct: 1927 KSIADCVEALIGAYLIECGPRGALLFMAWLGIRVLPYTKQTANTLPEIESNEQQRIPGST 1986

Query: 1227 --DADLEVSLVDDCIT-RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAI 1275
              D+     +     T R+ L  + P  ++         ++ E+ +GY F  +  L +A+
Sbjct: 1987 KPDSKNTTVVYGKWPTPRSPLLPFAPNASDELEHLLSGFEEFEAILGYRFRDRSYLLQAM 2046

Query: 1276 THASVQEFY---CYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGD 1332
            THAS        CYQ L          L   + +Y+ +           P   +P AL D
Sbjct: 2047 THASYTPNRLTDCYQRL--------EFLGDAVLDYLIT-----RHLYEDPRQHSPGALTD 2093

Query: 1333 LLESIVGAVL---IDTKLNLDEVWRIFKPILSPIV 1364
            L  ++V   +   +  +    + +R   P L+ ++
Sbjct: 2094 LRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVI 2128



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 46/69 (66%)

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
           L  + Q+EVL+ FR    NLL AT V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR 
Sbjct: 556 LEHRRQEEVLKRFRMHDCNLLIATSVLEEGIDVPKCNLVLRWDPPTTYRSYVQCKGRARA 615

Query: 518 HNSQFILML 526
             +  ++++
Sbjct: 616 APAYHVMLV 624



 Score = 67.0 bits (162), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 22/142 (15%)

Query: 577 TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ- 631
           TGASV   +++ L+++YC  LPSD +     +++  S E      Y+  + LP N+P + 
Sbjct: 826 TGASVDLGTAIALVNKYCARLPSDTFTKLTALWRCASTERNGITLYQYTIRLPINSPLKH 885

Query: 632 TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSEN 676
            IVG     + L+++L  L+ C +LH++G L+D L P       ++E        EP + 
Sbjct: 886 DIVGLPMPTQTLARRLAALQTCVELHKIGELDDELQPIGKEGFRALESDWECFDLEPEDE 945

Query: 677 NLISKKNESLPGAGTTKRKELH 698
           +++   +E  P  GTTKR++ +
Sbjct: 946 HIVQLTDE--PRPGTTKRRQYY 965



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 9/123 (7%)

Query: 1319 DSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRE 1376
            D    ++ PKALGD+ ESI GA+ +D+ ++LD VW ++  ++ P +      +P  P+RE
Sbjct: 2155 DDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMKPEIEQFSNSVPKSPIRE 2214

Query: 1377 LIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLK 1434
            L+EL      F K      G  V   +     DV   G   G  R+ + AK  AA   L+
Sbjct: 2215 LLELEPETAKFGKPEKLADGRRVRVTV-----DVFCKGTFRGIGRNYRIAKCTAAKCALR 2269

Query: 1435 KLE 1437
            +L+
Sbjct: 2270 QLK 2272



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 14/159 (8%)

Query: 901  SVDAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYG 956
            + DA+  +D VV+  +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG
Sbjct: 1138 AFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFRHYYLVKYG 1194

Query: 957  IVLIHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPE 1010
            + + +  QPLL +  +    N L     N  G     S + +K        Q  + + PE
Sbjct: 1195 LTIQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPE 1253

Query: 1011 LLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEIN 1049
            L      P S+ ++   LP ++ R+  L+LA  +R++++
Sbjct: 1254 LCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVS 1292



 Score = 48.5 bits (114), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 94/198 (47%), Gaps = 24/198 (12%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F PR +Q+++   A  RNTI  L   + K  IA+ L+++++++ +  G  K+ ++L+  V
Sbjct: 14  FTPRDFQVELLAAAYERNTIICLGHRSSKEFIALKLLQELSRSSRRKG--KVSVYLSCQV 71

Query: 104 HLVHQQYDVIRVHTDF-EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
                   +  + T   +++ +     +      CW        V ++ P+  L+ L   
Sbjct: 72  GSDTNATSMCTMLTHLTDLKVWQEQPDMQVPFDHCW----TDYHVSILRPEGFLELLELG 127

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVS 217
            L+L+ V  IV+++CH  +    Y+K++  F +      + ++P++ G+ A P+      
Sbjct: 128 QLALNRVGLIVMEDCHDGSV---YSKLVPIFKNHICRAPAGDRPRILGL-AGPL------ 177

Query: 218 SAMDCEGQISELESTLDS 235
                E Q+ EL S L++
Sbjct: 178 --HSAECQLEELSSMLET 193


>gi|281206201|gb|EFA80390.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 804

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 87/178 (48%), Gaps = 16/178 (8%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR YQ   ++ A   N I  + TG GKT IA M+I  + Q       KK I+FL   + L
Sbjct: 211 PREYQKYFYKKAMEDNIICCIPTGLGKTQIAAMVICKMKQM----NPKKRILFLVERIPL 266

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V QQ   IR  T   V   +G   +D        K  + +DVLV    + L+ LR     
Sbjct: 267 VLQQEKYIREQTGLNVLGVHGDMSID-------AKLNDHHDVLVSISALFLNLLRDNKGV 319

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYH--KSDNKPKVFGMTASPVVRKGVSSAMD 221
           ++    IV DE HH   +H ++ ++K+ Y   + D KPKV G+TASP    G SS +D
Sbjct: 320 MEQYSLIVFDEAHHIVKDHSFSMLLKKHYKDMEDDVKPKVMGLTASPA---GKSSWID 374



 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 52/78 (66%), Gaps = 1/78 (1%)

Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
           GST S    T   QK+++E FR G+ N++ AT V+EEG+ VP C+ VIR D P TV++Y 
Sbjct: 596 GSTKSGGQSTAS-QKDIVEKFRSGQHNVIVATAVLEEGLDVPECNVVIRIDSPATVTAYT 654

Query: 510 QSRGRARQHNSQFILMLE 527
           QSRGR R   S+F  +L+
Sbjct: 655 QSRGRLRSKKSEFYAILK 672


>gi|425768112|gb|EKV06652.1| Dicer-like protein 2 [Penicillium digitatum Pd1]
 gi|425769791|gb|EKV08273.1| Dicer-like protein 2 [Penicillium digitatum PHI26]
          Length = 796

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 127/298 (42%), Gaps = 41/298 (13%)

Query: 1027 LLPSVMQRLESLMLASQLREEI--NCHSRNFHIPSSLILEALTTLGCCESFSMERLELLG 1084
             + +++ RLE+ ++A +L + I      +N       ++ A++      S + +R E  G
Sbjct: 316  FISAILDRLEASLVAHRLNDTILKGVGIQNI----DHVITAISAPIAQASTNYQRFEFFG 371

Query: 1085 DSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRW 1144
            DSVLK+ VSC LF      HEG LS  R   V N+ L     D  +  +I  S F PR+W
Sbjct: 372  DSVLKFTVSCQLFFRNTNWHEGYLSESRDKLVQNTRLAHAALDIGIDCFILTSRFTPRKW 431

Query: 1145 VAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEAL 1204
             AP    +R        + LE                        R + +K +AD  E+L
Sbjct: 432  AAP---LIR--------NKLE-------------------ASTAKRSISTKVLADVVESL 461

Query: 1205 IGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYE 1264
            IGA YV GG+  A   +     + DL  + +   +T    +     IN  + +   IGY 
Sbjct: 462  IGAAYVDGGIRKAQACLHRFLPEIDLFTTEISP-LTLPPSKGASSLINHHR-LAGLIGYT 519

Query: 1265 FTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGP 1322
            F    LL EA+THAS  E+      Y+ L+     +L  +   V +   P E  D GP
Sbjct: 520  FKDPALLTEALTHASC-EYDTSTQSYQRLEFLGDAVLDMVVMAVIA-AHPVE-MDQGP 574


>gi|37266499|gb|AAQ90464.1| Dicer1 [Danio rerio]
          Length = 1243

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            LIL+ALT     + F++ERLE+LGDS LK+A++ +LF TYP  HEG+LS  RS  V N  
Sbjct: 656  LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 715

Query: 1121 LHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1148
            L++LG  + L   +  S FDP   W+ PG
Sbjct: 716  LYRLGKKKGLPSRMVVSIFDPPVNWLPPG 744



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 11/124 (8%)

Query: 582 TTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE---EAYECELTLPSNAPFQT-IVGPT 637
           T ++++  ++RYC  LPSD +    P  K K+ E     Y   L LP N+P +  + GP 
Sbjct: 1   TMNTAIGHVNRYCARLPSDPFTHLAP--KCKTVEMNTGGYRSTLFLPINSPLRVPVTGPV 58

Query: 638 SRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG-AGTT 692
                L+++ V L  CEKLH++G L+DHL+P    +V+   E +L  ++  S+PG  G+T
Sbjct: 59  MNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 118

Query: 693 KRKE 696
           KR++
Sbjct: 119 KRRQ 122



 Score = 63.9 bits (154), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 14/123 (11%)

Query: 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSL 1384
            PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++      +P  P+REL+E+    
Sbjct: 1126 PKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 1185

Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQ----ERSRKAAKGKAASQLLKKLEVCE 1440
              F     T  G     ++R+ ++   +VG+G+     RS + AK  AA + L+ L+  +
Sbjct: 1186 AKFSPAERTYDG-----KVRVTVE---VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQ 1237

Query: 1441 KRI 1443
             ++
Sbjct: 1238 PQV 1240



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 945  KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGGGS---GKGSKSGMNTK 999
            +TF  Y+  KY + L +  QPLL +  + +  NLL   + N  G +       K     +
Sbjct: 330  ETFAEYYKTKYNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWE 389

Query: 1000 KPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1047
              Q    + PEL     +P S+ +    LPS++ RL  L+ A +LR +
Sbjct: 390  SLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQ 437



 Score = 42.7 bits (99), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 22/149 (14%)

Query: 1192 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI------------DADLE---VSLVD 1236
            +  K+IADC EAL+G Y    G  AA   +  LG+             A+L+   + +  
Sbjct: 908  IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPPEKQSSGGSAELQYGWLKIPP 967

Query: 1237 DCITR--ASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQ 1294
             C+     + R+    I+   + ESKI Y F  K  L +A THAS   +    + Y+ L+
Sbjct: 968  RCMFEHPDAERTLNHLISGFLNFESKINYTFKNKAYLLQAFTHASYH-YNTITDCYQRLE 1026

Query: 1295 HCSTLLLSQ-ITEYVKSFPK---PGETTD 1319
                 +L   IT+++   P+   PG  TD
Sbjct: 1027 FLGDAILDYLITKHLYEDPRQHSPGVLTD 1055


>gi|14591755|ref|NP_143722.1| Hef nuclease [Pyrococcus horikoshii OT3]
          Length = 748

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 8/165 (4%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR+YQ  ++   K RN + VL TG GKT+IA M+I D     + + +   ++ LAPT  L
Sbjct: 13  PRLYQELIYAKCKERNCLIVLPTGLGKTIIA-MMIADY----RLDKYGGKVLMLAPTKPL 67

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V Q  +  R       E+     G  E       +   +  V++ TPQ + + L    +S
Sbjct: 68  VLQHAETFRKFFTLPPEKIVALTG--EISPNERVRAWARAKVVIATPQTIENDLLVGRIS 125

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
           L+ V  I+ DE H A GN+ Y  I KE+  ++ N P V G+TASP
Sbjct: 126 LEDVTLIIFDEAHRAVGNYAYVYIAKEYLKQAKN-PHVIGLTASP 169



 Score = 46.2 bits (108), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 11/119 (9%)

Query: 417 CIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVD--ALTPKVQKEVLESFRGG 473
            I+F   R  A KVVE  +K       +      G  +  +   ++ K QK +L++F   
Sbjct: 367 IIVFTNYRETAKKVVEELMK-----DGIKARRFVGQASRENDRGMSQKEQKLILDAFARS 421

Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFD-LPKTVSSYIQSRGR-ARQHNSQFILMLERGN 530
           + N+L AT V EEG+ VP    VI ++ +P  + S +Q RGR  RQ   + ++++ +G 
Sbjct: 422 EFNVLVATSVGEEGLDVPEVDLVIFYEPVPSAIRS-VQRRGRTGRQKPGRVVILMAQGT 479


>gi|325182937|emb|CCA17392.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
 gi|325189887|emb|CCA24367.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 1653

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 123/536 (22%), Positives = 233/536 (43%), Gaps = 61/536 (11%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           N+  R YQ+ + E A   NT+  L TG GKT+IA +++ +  +    NG    +IFLAPT
Sbjct: 159 NYQIREYQVSIAEKAMYHNTLVSLPTGLGKTLIASVVMHNFYRWF-PNG---KVIFLAPT 214

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKG-VDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
             LV QQ           +++    +G V +   + W K+     +   TPQ   + +++
Sbjct: 215 KPLVTQQIQACYEINGLPLDQTAEIQGNVPKESRRKWWKQ---KRIFFCTPQSFTNDVKE 271

Query: 162 AFL--SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSA 219
                +  IVC I IDE H A GN+ Y   ++E   +  N  ++  ++A+P  +      
Sbjct: 272 GIFKDAHQIVCLI-IDEAHRARGNYAYCMAIQEL-KRYTNWFRIVALSATPGSKVEFIQE 329

Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKES---CRFYDQSKFCGSDLKGKLEV 276
           +    QIS +E+       T++D ++++ ++   KE    C   ++ K  G+ +   LE 
Sbjct: 330 IITNLQISHIEAR------TMDD-SDVKKYMFERKEEIIKCPVSEEIKVIGNLIDRLLEK 382

Query: 277 SWSKFDASLSKLQG------SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330
              +  A    +Q       +Q    +  D    T R Q   +   I+    + GL+ ++
Sbjct: 383 LLHRL-AQYGVMQAGSPEKLTQFYLLQARDHFRNTKRSQYQSHQIHIIE--GDFGLLLSW 439

Query: 331 -EAVKICLEKVLK-AQEECEIYRQSSLQCKYF------------LEEVLHVIGSALPLA- 375
             A K+ +   +K      E++RQ + +  +             L E L  +GS   L+ 
Sbjct: 440 VHARKLLMVHGIKPCTGYIEVWRQDTKRISWSKRDLMESNEFKGLVEYLESMGSKEGLSQ 499

Query: 376 DKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV--ERF 433
           D   LD      K ++  +  +K      +F  F  S  ++     +R+  ++ +  ERF
Sbjct: 500 DHSKLDV---LRKILEKHFTESKKETKAIVFTQFRASVDII----QDRLSKSESIRAERF 552

Query: 434 VKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           + +    +     + T    +    T K Q+E++ +F+ G +N+L AT + EEG+ +   
Sbjct: 553 IGQSSVTSS---CFNTKLVENQRGQTQKHQQEIITNFKAGTINVLVATCIAEEGLDIGQV 609

Query: 494 SYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERGNLKQRNKLFDIIRSERSVT 548
             ++ +D   +    IQ  GR  R+     ++++  G+  +  KL   + + R +T
Sbjct: 610 DLIVLYDTVTSPVRLIQRMGRTGRKRIGNVVILVTEGD--EEKKLQRSLSNARGIT 663


>gi|119497161|ref|XP_001265345.1| helicase, putative [Neosartorya fischeri NRRL 181]
 gi|189082435|sp|A1D4V5.1|MPH1_NEOFI RecName: Full=ATP-dependent DNA helicase MPH1
 gi|119413507|gb|EAW23448.1| helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 1111

 Score = 85.1 bits (209), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 112/511 (21%), Positives = 204/511 (39%), Gaps = 52/511 (10%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  + +     N +  L TG GKT IA  ++ +  +  KS      IIF+APT  LV
Sbjct: 300 RDYQFNIAQRGLFHNLLVALPTGLGKTFIAATIMLNWYRWTKS----AQIIFVAPTKPLV 355

Query: 107 HQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            QQ         + R  T     E       +EW S+          V  MTPQ L++ L
Sbjct: 356 AQQISACFQVAGIPRSQTTMLTGEAAPGIRAEEWKSKR---------VFFMTPQTLVNDL 406

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-VVRKGVSS 218
           +        +  +V+DE H ATG + Y +++K F  + +   +V  +TA+P    + V +
Sbjct: 407 KSGIADPKRIVLLVVDEAHRATGGYAYVEVVK-FLKRYNKSFRVLALTATPGSTVESVQA 465

Query: 219 AMDCEG------------QISELESTLDSQVFTIEDKTE----MEVFVPSAKESCRFYDQ 262
            +D  G             I E     D++V T ++  E    ME+F  + +      DQ
Sbjct: 466 VIDGLGIAKVEIRTEQSLDIREYVHARDTEVQTFKNSDEMVLCMELFTRTLQP---LVDQ 522

Query: 263 SKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD 322
            +   +   G+  ++ + F  + ++ Q    +  ++ +   K     +    A + + +D
Sbjct: 523 LRNLNA-YWGRDPMALTAFGLTKARQQWMGSDAGRNANLGLKGKVNAIFTVLASLAHAID 581

Query: 323 ELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
               +  Y  +      +L  Q   +  +    Q +   +E    + + L    K     
Sbjct: 582 ----LLKYHGITPFYRHLLHFQSNTDGQKGGKYQRQIVQDESFKKLMNHLQPWTKNPEFI 637

Query: 383 G---FDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439
           G    +Y K V L +   +             +T+++  IFV    +A+ V R +K+   
Sbjct: 638 GHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIM--IFVHFRDSAEEVVRVLKRYEP 695

Query: 440 LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
           L    V     S    + +  K Q  +++ F+ G  N + AT + EEG+ +     ++ +
Sbjct: 696 LIRPHVFVGQSSAKGSEGMDQKTQLSIVQKFKKGTYNTIVATSIGEEGLDIGEVDLIVCY 755

Query: 500 DLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
           D   +    +Q  GR  R+     +L+L +G
Sbjct: 756 DSSASPIRMLQRMGRTGRKRAGNIVLLLMQG 786


>gi|156358317|ref|XP_001624467.1| predicted protein [Nematostella vectensis]
 gi|156211250|gb|EDO32367.1| predicted protein [Nematostella vectensis]
          Length = 642

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 128/567 (22%), Positives = 233/567 (41%), Gaps = 110/567 (19%)

Query: 34  GPSSSTN---------SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIA 84
           GPS+S +           N+  R YQ  + + A  +N +  L TG GKT IA +++ +  
Sbjct: 64  GPSTSFDMESGDIWIYPTNYPVRDYQFNIVQKALYQNIMVTLPTGLGKTFIAAVVMYNYY 123

Query: 85  QAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS--------- 135
           +          ++F+APT  LV QQ           +E  Y   G+ + D+         
Sbjct: 124 RWYPQGK----VVFMAPTKPLVAQQ-----------IEACYKIMGIPQTDTAEMTGNMAP 168

Query: 136 ----QCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMK 191
                 W+ +     V  +TPQ+L + L +   +   V  +V+DE H A GNH Y ++++
Sbjct: 169 TKRENLWRTK----RVFFLTPQVLQNDLSRGSCAAADVVLLVVDEAHKALGNHSYCQVVR 224

Query: 192 EFYHKSDNKPKVFGMTASP-----VVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEM 246
           E    + N  +V  ++A+P      V++ +++ +    ++   E + D + +T   +T  
Sbjct: 225 EILSYTTNF-RVLALSATPGDDIKAVQQVLTNLLISHVELRS-EDSQDIKPYT-HARTVE 281

Query: 247 EVFVPSAKESCRFYDQSKFCGSDLKGKL---EVSWSKFDASLSKLQGSQLNCYKDMDD-- 301
           ++ VP   +  R   Q       + G+L    V W K    +SK     L+C +      
Sbjct: 282 KIVVPLGDQIVRVKTQYLKVLDTIVGRLFCNRVVWQKDPLRMSKFM--LLSCREQFRKGP 339

Query: 302 KHKTLRKQ-----------LSDYHAKILYCLDELGLICAYEAVKICLE--------KVLK 342
                R Q           +S YHA  L  L + G++  Y  +K  LE        K   
Sbjct: 340 AENMNRAQVGSIEGDFAMGISLYHAYEL--LHQHGILSFYNFIKGILEGSKGMTRAKTEL 397

Query: 343 AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS----TK 398
            + +  IY  S+L  ++           + P + +  + F     +A D  + S     K
Sbjct: 398 MRHQVTIYYTSALFSQF-----------SSP-SRRRSMQF-----QASDPRFKSHPKLQK 440

Query: 399 LHEL-LQLFLSFGKSTQVL---------CIIFVE-RIIAAKVVERFVKKVPFLTHLTVAY 447
           L E+ ++ F  F +ST  +          +IF + R    ++     +  P +  ++   
Sbjct: 441 LEEIVVEHFKKFAESTSKVKGKPSVDTRVMIFSQYRDSVKEITTILCRHKPLVRVMSFIG 500

Query: 448 LTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
              +  S   L+ K Q EV+  FR G  N L +T V EEG+ + +   ++ FD   +   
Sbjct: 501 QASTGKSSKGLSQKEQLEVVHRFRMGGYNTLVSTCVGEEGLDIGDVDLIVCFDAHASPIR 560

Query: 508 YIQSRGR-ARQHNSQFILMLERGNLKQ 533
            +Q  GR  R+ + + ++++  G  +Q
Sbjct: 561 LVQRMGRTGRKRDGRIVVLVAEGKEEQ 587


>gi|307207083|gb|EFN84892.1| Fanconi anemia group M protein [Harpegnathos saltator]
          Length = 1344

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 122/513 (23%), Positives = 228/513 (44%), Gaps = 61/513 (11%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           N+  R YQ  + E A   NT+  L TG GKT IA +++ +  +      F K I+FLAPT
Sbjct: 32  NYPVRKYQYNIVETALYHNTLVCLPTGLGKTFIAAVIMYNFWRWF---PFGK-IVFLAPT 87

Query: 103 VHLVHQQ----YDVIRVHTDFEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQILLD 157
             LV QQ    Y+++ + +   V+       V++ + Q  W K+     ++  TPQ+   
Sbjct: 88  KPLVGQQIDACYEIMGIPS---VDMIKLTGAVNQKNRQIYWFKK----RIIFATPQVFHK 140

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKP-KVFGMTASPVVRKGV 216
            L K+ +   +V  +V+DE H A G H Y + ++     + NK  ++  ++A+P  +   
Sbjct: 141 DLEKSIVPSHLVKCVVVDEAHKALGKHSYCESIRIL--STQNKYFRILALSATPGNKIDN 198

Query: 217 SSAMDCEGQISELESTLDSQVFTIE--DKTEME-VFVPSAKESCRFYDQSKFCGSDLKGK 273
              +     IS LE   +  +  I   +K +++ + +P + E  +F ++      D   K
Sbjct: 199 VHEVIQNLYISHLELRDEDSIDIIPYVNKRKIDTILIPLSNELAQFKERY-IIIMDRHVK 257

Query: 274 LEVSWSKFDASLSKLQGSQ----LNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
             + ++      + +   +    LN +K+  +K        S  + +I+  L+   L+  
Sbjct: 258 FLIQYNVLRGHTANISKGRIFHLLNEFKERTNK--------SGNYGQIMKTLN--ILLTM 307

Query: 330 YEAVKICLEKVLKAQEECEIYRQSS----LQCKYFLEEVLHVIGSAL-PLADKIFLDFGF 384
           Y A  + +   L+A   C+ Y+  S    +  +  L ++L+ I + L P  D   L  G 
Sbjct: 308 YHAYDLMIRHGLRAF--CKFYQNHSDKFWMNNENQLRQLLYDIETYLGPFPD--ILPNGH 363

Query: 385 DYSKAVDLGYISTKLHELLQLF-----LSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVP 438
                 ++ +   K ++L +L       + G++     I+FVE R I  +V    ++  P
Sbjct: 364 VSEMPTNIMFGHNKFYKLKELLERHFRKNNGENADTRAIVFVEYRDIVNEVYILLLQSKP 423

Query: 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
               +      G  +       K Q + LE FR   VN+L +T + EEG+ V     +I 
Sbjct: 424 L---IRPQMFVGQASQ----KQKQQIKALEDFRNNHVNVLISTSIGEEGLDVGEVDLIIC 476

Query: 499 FDLPK-TVSSYIQSRGR-ARQHNSQFILMLERG 529
           FD+ + + +  +Q  GR  R+ +   I+++  G
Sbjct: 477 FDVSQHSPTRLVQRMGRTGRKRDGHIIILVTDG 509


>gi|284161344|ref|YP_003399967.1| DEAD/DEAH box helicase [Archaeoglobus profundus DSM 5631]
 gi|284011341|gb|ADB57294.1| DEAD/DEAH box helicase domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 736

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 89/181 (49%), Gaps = 14/181 (7%)

Query: 32  VDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNG 91
           V  P    N+I    R YQ+ +   A  RNT+ VL TG GKT+IA+++I   A  + + G
Sbjct: 4   VHHPLIRENTIE--RRSYQIAITATALMRNTLVVLPTGLGKTVIALLVI---ASRLHNKG 58

Query: 92  FKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS--QCWQKEINKNDVLV 149
            K L+  LAPT  LV Q  +  R        E     G    D   Q W    NK  V+V
Sbjct: 59  GKALV--LAPTKPLVEQHANFFRKTLKIPSNEIVALSGEVPPDKRYQLW----NKAKVVV 112

Query: 150 MTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209
            TPQ++ + L    +SL+ V  +  DE H A GN+ Y  I K +  ++ + P +  +TAS
Sbjct: 113 STPQVIENDLISGRISLEDVVHVTFDEAHRAVGNYSYVFIAKAYMEQAKD-PLILAITAS 171

Query: 210 P 210
           P
Sbjct: 172 P 172



 Score = 47.4 bits (111), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 457 ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD-LPKTVSSYIQSRGR- 514
            L  + Q E++E FR G + +L AT V EEG+ +P    V+ ++ +P  + S IQ +GR 
Sbjct: 404 GLRQREQVEIVERFRAGDIKVLVATSVGEEGLDIPEVDLVVFYEAIPSEIRS-IQRKGRT 462

Query: 515 ARQHNSQFILMLERGNLKQRNKLFDIIRSERSV 547
            R+   + ++++ +G  +     +  +R ER++
Sbjct: 463 GRKKEGRIVVLVTKGT-RDEAYFYISLRKERAM 494


>gi|242053021|ref|XP_002455656.1| hypothetical protein SORBIDRAFT_03g016946 [Sorghum bicolor]
 gi|241927631|gb|EES00776.1| hypothetical protein SORBIDRAFT_03g016946 [Sorghum bicolor]
          Length = 99

 Score = 84.7 bits (208), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 1/93 (1%)

Query: 1094 CHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLR 1153
            C  F     KH GQLS+RR   +CN+T ++LG + ++ GYIR++AFDP R +APGQLS R
Sbjct: 5    CPSFHGICNKHVGQLSSRRQEMICNATHYRLGIEHRIHGYIRNAAFDPCRRLAPGQLSSR 64

Query: 1154 PVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD 1186
            P PCE  V + EV  +      D  +++ K CD
Sbjct: 65   PCPCEWLVKS-EVVTEDIHEIDDKSIIIVKACD 96


>gi|83765677|dbj|BAE55820.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 853

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 110/517 (21%), Positives = 199/517 (38%), Gaps = 64/517 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  + +     N +  L TG GKT IA  ++ +  +  +S      IIF+APT  LV
Sbjct: 49  RDYQFNIAQKGLFHNLLVALPTGLGKTFIAATIMLNWFRWTES----AQIIFVAPTKPLV 104

Query: 107 HQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            QQ         + R  T     E       +EW ++          V  MTPQ L++ L
Sbjct: 105 AQQISACFGIAGIPRSQTTMLTGEAAPGIRAEEWQNK---------RVFFMTPQTLINDL 155

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR----KG 215
           +        +  +V+DE H ATG + Y +++K F  + +   +V  +TA+P       + 
Sbjct: 156 KSGIADPKRIVLLVVDEAHRATGGYAYVEVVK-FLRRYNQSFRVLALTATPGSTVESVQA 214

Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPS----------AKESCRFYDQSKF 265
           V   +D        E +LD + +     TE++ F  S          +K      DQ + 
Sbjct: 215 VIDGLDIARVEIRTEQSLDIREYVHSRNTEVQTFKNSEEMVLCMDLLSKTLQPLVDQLRT 274

Query: 266 CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELG 325
             +   G+  +  + F  + S+ Q    +  ++     K     +    A + + +D   
Sbjct: 275 LNA-YWGRDPMMLTAFGLTKSRQQWMASDAGRNAHFGLKGKVNAIFTVLASLAHAID--- 330

Query: 326 LICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG-- 383
            +  Y  +      +L  Q   E  +    Q +   +E    + + L    K     G  
Sbjct: 331 -LLKYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESFKKLINHLQPWTKNPEFIGHP 389

Query: 384 -FDYSKAVDLGYISTKLHELLQLFLSFGKSTQ---------VLCIIFVERIIAAKVVERF 433
             +Y K+V L +           F+  G+ +             +IFV    +A+ V R 
Sbjct: 390 KLEYLKSVVLNH-----------FMDAGEGSNGEASDSQSSTRIMIFVHFRDSAEEVTRV 438

Query: 434 VKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           +K+   +    V     S    + +  K Q ++++ F+ G  N + AT + EEG+ +   
Sbjct: 439 LKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVATSIGEEGLDIGEV 498

Query: 494 SYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
             ++ +D   +    +Q  GR  R+     +L+L  G
Sbjct: 499 DLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMEG 535


>gi|259489484|tpe|CBF89793.1| TPA: DNA helicase (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 971

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 111/522 (21%), Positives = 199/522 (38%), Gaps = 74/522 (14%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  + +     N +  L TG GKT IA  ++ +  +  KS      IIF+APT  LV
Sbjct: 161 RDYQFNITQKGLFYNLLVALPTGLGKTFIAATIMLNWLRWTKS----AQIIFVAPTKPLV 216

Query: 107 HQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            QQ         + R  T     E       +EW S+          V  MTPQ L + L
Sbjct: 217 AQQISACLRIAGIPRSQTTMLTGEAPPGIRAEEWKSKR---------VFFMTPQTLTNDL 267

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR----KG 215
           +        +  +V+DE H ATG + Y +++K F  + +   +V  +TA+P       + 
Sbjct: 268 KSGIADPKRIVLLVVDEAHRATGGYAYVEVVK-FLRRFNQSFRVLALTATPGSTVESVQA 326

Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275
           V   +D        E +LD + +     T+++ F  S        D+   C   L   L+
Sbjct: 327 VIDGLDIARVEIRTEHSLDIREYVHARNTDIQTFQNS--------DEMILCMDLLSSTLQ 378

Query: 276 ----------VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELG 325
                       W +   SL+    ++      + D  +     L +    I   L  + 
Sbjct: 379 PLVDQLRTLNAFWGRDPMSLTPYGLTKARQQWMLSDAGRNAHFGLKNKINAIFTVLASMA 438

Query: 326 L---ICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF 382
               +  Y  +      +L  Q   +  +    Q +   +E             K  +++
Sbjct: 439 HGIDLLKYHGITPLYRHLLHFQSNTDGKKGGKYQRQIVQDEHF-----------KKLMNY 487

Query: 383 GFDYSKAVD-LGYISTKLHELLQL----FLSFGKSTQ---------VLCIIFVERIIAAK 428
              +++  + +G+   KL  L Q+    F+  G+ T             +IFV    +A+
Sbjct: 488 LTPWTRNPEFIGH--PKLEYLRQVVLNHFMDAGEGTHGAGNENQTATRVMIFVHFRDSAE 545

Query: 429 VVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488
            V R +K+   +    V     S    + +  K Q ++++ F+ G  N + AT + EEG+
Sbjct: 546 EVTRVLKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIIQKFKKGTYNTIVATSIGEEGL 605

Query: 489 HVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
            +     ++ +D   +    +Q  GR  R+     +L+L +G
Sbjct: 606 DIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQG 647


>gi|89114022|gb|ABD61602.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 119/516 (23%), Positives = 205/516 (39%), Gaps = 95/516 (18%)

Query: 577  TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ- 631
            TGASV   S++ L+++YC  LPSD +     +++    E A    ++  L LP N+P + 
Sbjct: 759  TGASVDLGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKH 818

Query: 632  TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSEN 676
             IVG     + L+++L  L+AC +LH++G L+D L P       ++E        EP + 
Sbjct: 819  DIVGLPMPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDE 878

Query: 677  NLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSG 736
             ++   +E  PG  T +R+  +          R        L+  +    C I  E  + 
Sbjct: 879  QIVQLSDEPRPGT-TKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTR 937

Query: 737  FVLLIESELDNDVGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAKCF----QELFF 791
               +   E D   G   L    + K    ++ + SG+V +   +++K +      Q +  
Sbjct: 938  GRKIYPPE-DAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSL-ELAKERVILTSEQIVCI 995

Query: 792  NGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINP 851
            NG     F                TN L    ++ L  P    N                
Sbjct: 996  NGFLNYTF----------------TNVLRLQKFLMLFDPDSTEN---------------- 1023

Query: 852  CASVVEFIKEKS--------FLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVD 903
            C  +V  +K  +        FL   Q N   GN+ P R  P +                D
Sbjct: 1024 CVFIVPTVKAPAGGKHIDWQFLELIQAN---GNTMP-RAVPDE---------ERQAQPFD 1070

Query: 904  AKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVL 959
             +  +D VV+  +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ +
Sbjct: 1071 PQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLTI 1127

Query: 960  IHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLV 1013
             +  QPLL +  +    N L     N  G     S + +K        Q  + + PEL  
Sbjct: 1128 QNTSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELCT 1186

Query: 1014 RVDVPISVVKSLYLLPSVMQRLESLMLASQLREEIN 1049
                P S+ ++   LP ++ R+  L+LA  +R++++
Sbjct: 1187 VHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVS 1222



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1667 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1726

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L  Y+  + F+P   W+ P
Sbjct: 1727 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1755



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG-----STTSVDA-LTPK 461
           +  LC +I+  +   A+V+   + ++    P L  L   Y T      +T   +A L  +
Sbjct: 433 SDTLCALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHR 492

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   + 
Sbjct: 493 RQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAY 552

Query: 522 FILML 526
            ++++
Sbjct: 553 HVILV 557



 Score = 50.8 bits (120), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 52/209 (24%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI------------------------DADL 1230
            K+IADC EALIGAY +  G   AL  M WLG+                        +A+ 
Sbjct: 1844 KSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAEN 1903

Query: 1231 EVSLVDDCIT-RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             V++     T R+ L  + P   E         ++ E  +GY+F  +  L +A+THAS  
Sbjct: 1904 VVTVYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYT 1963

Query: 1282 EFY---CYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIV 1338
                  CYQ L          L   + +Y+ +           P   +P AL DL  ++V
Sbjct: 1964 PNRLTDCYQRL--------EFLGDAVLDYLIT-----RHLYEDPRQHSPGALTDLRSALV 2010

Query: 1339 GAVL---IDTKLNLDEVWRIFKPILSPIV 1364
               +   +  +    + +R   P L+ ++
Sbjct: 2011 NNTIFASLAVRHGFHKFFRHLSPGLNDVI 2039


>gi|296421581|ref|XP_002840343.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636558|emb|CAZ84534.1| unnamed protein product [Tuber melanosporum]
          Length = 1066

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 135/574 (23%), Positives = 223/574 (38%), Gaps = 79/574 (13%)

Query: 10  RSFGEVHSPNPPDMGSSGHDHAVDGPSSST--NSINFIPRIYQLKVFEVAKRRNTIAVLE 67
           RS+  V +  PP        H +D  ++ T     N   R YQ  +   A   N +  L 
Sbjct: 134 RSWPLVSTQEPPTH------HKIDREAAKTWIYPANIPHRDYQYSIVSRALFSNVLVALP 187

Query: 68  TGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV---IRVHTDFEVEEY 124
           TG GKT+IA  +I +  +          I FLAPT  LV QQ D    I         E 
Sbjct: 188 TGLGKTLIAATVILNFFRWAPEG----QIAFLAPTKPLVAQQIDACFNIVGIPRSATAEM 243

Query: 125 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH 184
            G  GV +     W+++     V  +TPQ + + + +       +  +VIDE H ATGN+
Sbjct: 244 TGNVGVQQ-RRDYWEEK----RVFFLTPQTMQNDIARGICDAKRIVCLVIDEAHRATGNY 298

Query: 185 PYTKIMKEFYHKSDNKPKVFGMTASP--VVRKGVSSAMDCEG----QISELESTLDSQVF 238
            Y +++K    + +N  +V  +TA+P   + K V + +D  G    +I  LES LD + +
Sbjct: 299 AYVQVVK-LLRRVNNSFRVLALTATPGSTIDK-VQAVIDSCGIAGTEIRNLES-LDIRPY 355

Query: 239 TIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE--VSWSKFDASLSKLQGSQLNCY 296
             +    ++VF     E     D    C   L  KL    ++   D     + G Q    
Sbjct: 356 VYKRFQHLQVF-ELTDEMVELRDLYCKCLEPLLKKLNDARAYRVTDIKAISMFGVQQAGR 414

Query: 297 KDM-DDKHKTLRKQLSDYHAKILYCLDELGLICAY---EAVKICLEKVLKAQEEC----- 347
           + M  +  +     L          L  L L   +     V++   K+ + Q E      
Sbjct: 415 EWMTSNAGRDANPALKGMMLNAFSTLSSLALPLHFLTEHGVRVFFNKLSEVQAEVFSNPK 474

Query: 348 -----------EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS 396
                      E +R+   +C+  +    +     L     + L   FD   A       
Sbjct: 475 GGKTKKGIINDENFRKVMGKCQELVSNKEYSGHPKLDYLASVVLKHFFDAEDA------E 528

Query: 397 TKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTSV 455
           TK    + +F S+  S             A ++V    K  P +  H+ V    G    V
Sbjct: 529 TKRETRIMIFTSYRSS-------------AEEIVRVLSKHQPIVKPHIFVGQADGK--GV 573

Query: 456 DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR- 514
           + +  K Q EV++ F+ G  N++ AT + EEG+ +     +I +D   +    +Q  GR 
Sbjct: 574 EGMKQKDQIEVIKDFQVGIYNVIVATSIGEEGLDIGEVDMIICYDQQGSSIRLLQRMGRT 633

Query: 515 ARQHNSQFILMLERG----NLKQRNKLFDIIRSE 544
            R+ +    ++L +G    N K+  +  + I+ E
Sbjct: 634 GRKRDGHVHILLTQGKEEDNFKRATRDHEFIQGE 667


>gi|148670595|gb|EDL02542.1| DNA segment, Chr 11, Lothar Hennighausen 2, expressed, isoform
           CRA_a [Mus musculus]
          Length = 609

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 185/425 (43%), Gaps = 59/425 (13%)

Query: 145 NDVLVMTPQILLDALRKA----FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH----K 196
           +D+L+ T ++L  AL  +     + L     IV+DECHH   +  Y  I+  +      K
Sbjct: 28  HDLLICTAELLQLALNSSEEDEHVELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKK 87

Query: 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSA 253
           ++  P+V G+TASP    G   A   +G I    +L + LD+    +  K      +   
Sbjct: 88  AEPLPQVLGLTASP----GTGGATKLQGAIDHILQLCANLDT-CHIMSPKNCYSQLLMHN 142

Query: 254 KESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDY 313
            + C+ YD  +    D  G L          + KL  +Q++   +M D  +    Q+ + 
Sbjct: 143 PKPCKQYDLCQRRAQDPFGDL----------IKKLM-NQIHQQLEMPDLKQQFGTQMYEQ 191

Query: 314 HAKILYCLD--ELGL----ICAYEAVK----ICLEKVLKAQEECEIYRQSSLQCKYFLEE 363
              +  C D  E GL    + A    +    + +   ++A++  ++     LQ  Y  E 
Sbjct: 192 QV-VQLCKDAAEAGLQEQRVYALHLRRYNDALFIHDTVRARDALDM-----LQDFYDRER 245

Query: 364 VLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST------KLHELLQLFL-SFGKSTQVL 416
                 + +  A+   L   FD  K V LG ++       KL  L ++ L  FG      
Sbjct: 246 T---TKTQMVRAESWLLKL-FDDHKNV-LGQLAARGPENPKLEMLERILLKQFGSPGHTR 300

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVA----YLTGSTTSVDALTPKVQKEVLESFRG 472
            IIF      A  +  ++++ P L  + +        G+T+    +T K Q+EV++ FR 
Sbjct: 301 GIIFTRTRQTASSLLLWLRQQPCLQTVGIKPQMLIGAGNTSQSTHMTQKDQQEVIQEFRD 360

Query: 473 GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK 532
           G ++LL AT V EEG+ +  C+ V+R+ L     S +Q+RGRAR   S +  +   G+ +
Sbjct: 361 GILSLLVATSVAEEGLDIAQCNVVVRYGLLTNEISMVQARGRARAGQSVYSFLATEGSRE 420

Query: 533 QRNKL 537
            + +L
Sbjct: 421 MKREL 425


>gi|89114026|gb|ABD61604.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 119/516 (23%), Positives = 205/516 (39%), Gaps = 95/516 (18%)

Query: 577  TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ- 631
            TGASV   S++ L+++YC  LPSD +     +++    E A    ++  L LP N+P + 
Sbjct: 759  TGASVDLGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKH 818

Query: 632  TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSEN 676
             IVG     + L+++L  L+AC +LH++G L+D L P       ++E        EP + 
Sbjct: 819  DIVGLPMPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDE 878

Query: 677  NLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSG 736
             ++   +E  PG  T +R+  +          R        L+  +    C I  E  + 
Sbjct: 879  QIVQLSDEPRPGT-TKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTR 937

Query: 737  FVLLIESELDNDVGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAKCF----QELFF 791
               +   E D   G   L    + K    ++ + SG+V +   +++K +      Q +  
Sbjct: 938  GRKIYPPE-DAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSL-ELAKERVILTSEQIVCI 995

Query: 792  NGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINP 851
            NG     F                TN L    ++ L  P    N                
Sbjct: 996  NGFLNYTF----------------TNVLRLQKFLMLFDPDSTEN---------------- 1023

Query: 852  CASVVEFIKEKS--------FLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVD 903
            C  +V  +K  +        FL   Q N   GN+ P R  P +                D
Sbjct: 1024 CVFIVPTVKAPAGGKHIDWQFLELIQAN---GNTMP-RAVPDE---------ERQAQPFD 1070

Query: 904  AKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVL 959
             +  +D VV+  +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ +
Sbjct: 1071 PQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLTI 1127

Query: 960  IHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLV 1013
             +  QPLL +  +    N L     N  G     S + +K        Q  + + PEL  
Sbjct: 1128 QNTSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELCT 1186

Query: 1014 RVDVPISVVKSLYLLPSVMQRLESLMLASQLREEIN 1049
                P S+ ++   LP ++ R+  L+LA  +R++++
Sbjct: 1187 VHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVS 1222



 Score = 77.4 bits (189), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1667 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1726

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L  Y+  + F+P   W+ P
Sbjct: 1727 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1755



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG-----STTSVDA-LTPK 461
           +  LC +I+  +   A+V+   + ++    P L  L   Y T      +T   +A L  +
Sbjct: 433 SDTLCALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHR 492

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   + 
Sbjct: 493 RQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAY 552

Query: 522 FILML 526
            ++++
Sbjct: 553 HVILV 557



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 52/209 (24%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI------------------------DADL 1230
            K+IADC EALIGAY +  G   AL  M WLG+                        +A+ 
Sbjct: 1844 KSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAEN 1903

Query: 1231 EVSLVDDCIT-RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             V++     T R+ L  + P   E         ++ E  +GY+F  +  L +A+THAS  
Sbjct: 1904 VVTVYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYT 1963

Query: 1282 EFY---CYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIV 1338
                  CYQ L          L   + +Y+ +           P   +P AL DL  ++V
Sbjct: 1964 PNRLTDCYQRL--------EFLGDAVLDYIIT-----RHLYEDPRQHSPGALTDLRSALV 2010

Query: 1339 GAVL---IDTKLNLDEVWRIFKPILSPIV 1364
               +   +  +    + +R   P L+ ++
Sbjct: 2011 NNTIFASLAVRHGFHKFFRHLSPGLNDVI 2039


>gi|222615621|gb|EEE51753.1| hypothetical protein OsJ_33185 [Oryza sativa Japonica Group]
          Length = 726

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 120/501 (23%), Positives = 208/501 (41%), Gaps = 42/501 (8%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           N   R YQ K  E A   NT+  L TG GKT IA +++ +  +          I+F APT
Sbjct: 245 NVQVREYQKKFVEKALFTNTLVALPTGLGKTFIAAVVMYNYFRWFPEGK----IVFTAPT 300

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKG-VDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
             LV QQ +          E     KG +      C+ K      V  +TPQ+L + ++ 
Sbjct: 301 RPLVTQQIEACHNTVGIPQEWTIDLKGNLSPSKRSCFWK---SKRVFFVTPQVLQNDIQS 357

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKP-KVFGMTASPVVRK------ 214
               ++ +  +VIDE H A+ N+ Y  +++E   ++   P ++  +TA+P  ++      
Sbjct: 358 GICMVNQLVCLVIDEAHRASRNYAYCVVVREL--EAARVPLRILALTATPGSKQPAIQNV 415

Query: 215 ----GVSSAMDCEGQISELESTLDSQ-VFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269
                +S  + C+    E+   +  + V  +E   + + F+P   E+ +  D+       
Sbjct: 416 INNLRISELVHCDESDPEVSRYIQRRTVEPLEVCMDSDKFIPVGDEAEQVNDKLLDVIRP 475

Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
              KL  +        S     QL   KD  D+       L+D   +I      L L+  
Sbjct: 476 HLVKLRSARVIDHRDASNWSPHQLRMLKDKFDQAPPPNIPLAD-KKEIGISFQALTLL-- 532

Query: 330 YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKA 389
           Y  +K+ L   +KA  +       S++ KY  E    V+       +  FL+        
Sbjct: 533 YGIMKMLLSYGIKAAHQ-------SIEAKY-KEGSWKVLTR-----NNTFLEVKKTMENF 579

Query: 390 VDLGYISTKLHELLQLFLS-FGKSTQ-VLCIIFVERIIAAKVVERFVKKVPFLTHLTVAY 447
           +  G +S K+  L+++ L  F K+ +    IIF       K +   ++ +        A+
Sbjct: 580 LSQGILSPKVRTLVEVLLDHFRKNPKDSRVIIFAHYRECVKEILCSLRNIDGELVRPAAF 639

Query: 448 LTGSTT--SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTV 505
           +  S+T   +   T K+Q+ +L  FR G+ N+L AT + EEG+ +     V+ FD   + 
Sbjct: 640 IGQSSTGDQLKGQTQKMQQAILHKFRSGEYNILVATSIGEEGLDIMEVDLVVCFDANISA 699

Query: 506 SSYIQSRGRARQHNSQFILML 526
              IQ  GR  + N   + +L
Sbjct: 700 LRMIQRMGRTGRKNEGRVDIL 720


>gi|292657118|ref|YP_003537015.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2]
 gi|448293719|ref|ZP_21483822.1| Hef nuclease [Haloferax volcanii DS2]
 gi|291371263|gb|ADE03490.1| ATP-dependent RNA helicase/nuclease Hef [Haloferax volcanii DS2]
 gi|445569640|gb|ELY24211.1| Hef nuclease [Haloferax volcanii DS2]
          Length = 858

 Score = 84.3 bits (207), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 22/186 (11%)

Query: 29  DHAVDGPSSSTNSINFIPR-IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI 87
           DH +  PS       FI R +YQ+++   A+  +T+  L TG GKT +++++    AQ +
Sbjct: 11  DHPLLAPS-------FIERRLYQIRLAGTARDGHTLVCLPTGLGKTTVSLLVT---AQRL 60

Query: 88  KSNGFKKLIIFLAPTVHLVHQQYDVIR---VHTDFEVEEYYGAKGVDEWDSQCWQKEINK 144
              G K L  FLAPT  LV Q  D  R      D E+  + G    D+  ++ WQ+    
Sbjct: 61  HDVGGKSL--FLAPTKPLVQQHADFYREALTVPDDEIVVFTGDVRPDDR-AELWQE---- 113

Query: 145 NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVF 204
             +++ TPQ++ + L    +SL  V  +  DECH A+G++ Y  I  E YH +   P V 
Sbjct: 114 AQIVIATPQVIENDLIGNRISLRDVTHLTFDECHRASGDYAYVYIA-ERYHAAAENPLVT 172

Query: 205 GMTASP 210
           GM+ASP
Sbjct: 173 GMSASP 178



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
            I+F E    A+ +  F+ +  F     V    G     D +T   Q+E L+ FR G+  
Sbjct: 374 VIVFTESRDTAEALTEFLSE-SFSVRRFVGQ--GDREGSDGMTQNEQQETLDKFRNGEFE 430

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILML 526
           +L +T V EEG+ VP    V+ F+   T    IQ +GR  RQ + + +++L
Sbjct: 431 VLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRKGRTGRQADGRVVVLL 481


>gi|312079013|ref|XP_003141990.1| hypothetical protein LOAG_06406 [Loa loa]
          Length = 744

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 130/556 (23%), Positives = 226/556 (40%), Gaps = 82/556 (14%)

Query: 45  IPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           I R YQ ++ + A   RNT+    TG GKT++A  + ++     + N     I F     
Sbjct: 55  ILRKYQEELAQPAYNGRNTLICAPTGTGKTVVAASIARNHLIMGRKNNLHTKISFFVTNT 114

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWD---------SQCWQKEINKNDVLVMTPQI 154
             + QQ            E++ G +    W          +    + I   D++V+TPQ+
Sbjct: 115 TFLEQQTKCF--------EKFVGHR----WKVVFLSGITVNTPIAETIAAYDLIVITPQL 162

Query: 155 LLDALRKAF------LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS------DNK-- 200
           +++ L           SL     +  DE HH  GNHPY  IM  ++         D K  
Sbjct: 163 IVNLLNTCNEDNGLPFSLSSFSLMFFDEAHHTDGNHPYNVIMNNYHDMKHAGKVLDGKRL 222

Query: 201 PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCR 258
           P+V G+TAS  +    +++   E  I ++ + LD  V +   E+  E+  F   A +  +
Sbjct: 223 PQVVGLTASLGIGNAQNTSEAVEYFI-KICANLDITVLSYVHENIDELRAFTSIAADETK 281

Query: 259 FYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSD------ 312
               +    S   G L++ + +F+  L ++  S     K  +  ++ + ++L +      
Sbjct: 282 LVASNVTTYSVAVGILDL-FRRFEGILDRIARSVSISDKIHEPSNQEMLRRLQNPPHDKF 340

Query: 313 ---YHAKILYCLDELGLICAYEA-----VKICLE--KVLKAQEECEIYRQSSLQCKYFLE 362
              Y       L +   +   E      +  CL+   +L    E  I+  S +  KYF  
Sbjct: 341 SKVYETWFSQLLVKFVPVAKLEKENRFLIMTCLQFIGILFRSLEHYIHFPSYVAKKYFEN 400

Query: 363 E---VLHVIGSALPLADKIFLDFGFDYSKAVDLGYI------STKLHELL-QLFLSFGKS 412
           E   V H     L            D  +A  L  +      +   +ELL +L   F K 
Sbjct: 401 EFNLVRHTANQEL-----------VDIMQACPLKTVVGNNADNELYNELLRELHGQFAKQ 449

Query: 413 TQVLCIIFVE-RIIAAKVVERFVKKVPF-LTHLTVAYLTGSTTSVDALTPKV--QKEVLE 468
                I+FV  R  A ++ E   K     +  +   ++TG   S +     +  Q+++L 
Sbjct: 450 KDGRAIVFVATRDFAGQLSEELNKDESLQMLDIKSDFITGINASGENGGQSINQQRDILA 509

Query: 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528
            F  G + +L AT V EEG+ +  C+ VI++D      +++Q RGR R  NS+ +L+   
Sbjct: 510 RFTSGDIKILCATSVAEEGIDIQKCNLVIKYDYVTNEIAHVQRRGRGRAANSRCLLLTCD 569

Query: 529 GNLKQRNKLFDIIRSE 544
             L+ R +  +IIR +
Sbjct: 570 PKLQTREEK-NIIREQ 584


>gi|383319514|ref|YP_005380355.1| ERCC4-like helicase [Methanocella conradii HZ254]
 gi|379320884|gb|AFC99836.1| ERCC4-like helicase [Methanocella conradii HZ254]
          Length = 765

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 123/516 (23%), Positives = 222/516 (43%), Gaps = 87/516 (16%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQL +   A  ++++ VL TG GKT+IA++++ +  +  K+       + L+PT  LV
Sbjct: 33  RAYQLTLARNALEKSSLIVLPTGLGKTIIALLVMLERLEKGKA-------LMLSPTKPLV 85

Query: 107 HQQYDVIRVHTDF--EVEEYYGA----KGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
            Q    ++       +V  + G+    K VD W           + ++V TPQ++ + L 
Sbjct: 86  EQHAAFLKRTLTIPEQVAVFTGSVAPSKRVDIWKG---------SRIIVSTPQVIENDLL 136

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAM 220
                L  V  IV DE H ATG++ Y  I K++  +S          A+P+V    +S  
Sbjct: 137 TKRFDLKDVSLIVFDEAHRATGDYAYVYIAKKYVEQS----------ANPLVLGITASPG 186

Query: 221 DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280
               +I+E++  L   +  +E KTE +  V     +   Y++            +V W +
Sbjct: 187 STPEKINEVKQNL--FIERVEIKTEKDPDV-----APYIYEK------------DVEWVR 227

Query: 281 FDASLSKLQGSQLNCYKD--MDDKHKTLR------------KQLSDYHAKILYCLDELGL 326
            +      + +++    D  MDD+   L+            K+L     K+   +   G 
Sbjct: 228 VNVPD---KAAEIKILLDSLMDDRMDRLKALGVVRESRLTKKELLMLQEKLQADISRGGS 284

Query: 327 ICAYEAVKICLEKVLKAQEECE-IYRQSSLQCKYFLEEVLHVIGS------ALPLADKIF 379
             +Y AV I  E ++K +   + I  Q  +  K + E +    GS         L     
Sbjct: 285 PESYRAVSILAE-IMKIEHAVDLIQTQGVVPLKKYFERLKDEAGSKGGSKATKRLMQDAR 343

Query: 380 LDFGFDYSKAVD-LGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438
           L      +   D +   + K+ E++   +    S+++  I+F      A  V + + KV 
Sbjct: 344 LAGAMRIADTADEVNPKTEKVKEIVLEQIRENPSSRI--IVFTNFRDTADFVSKELAKVE 401

Query: 439 FLTHLTVAYLTGSTTSVD--ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496
            +  +      G  + ++   LT K Q E+L +FR G+ N L AT V EEG+ +P+   V
Sbjct: 402 GIRPVR---FVGQASKLNDKGLTQKRQVEILNAFRSGEFNTLIATSVAEEGLDIPSTDLV 458

Query: 497 IRFD-LPKTVSSYIQSRGR-ARQHNSQFILMLERGN 530
           I ++ +P  + + IQ RGR  R    + ++++ +G 
Sbjct: 459 IFYEPVPSEIRT-IQRRGRTGRNAVGRVVVLISKGT 493


>gi|315258243|gb|ADT91700.1| dicer-like protein 2 [Nicotiana attenuata]
          Length = 239

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 1111 RRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDG 1170
            +++  + N+ L KLG  RK+ G+IR   FD + W+ PG             D  +V    
Sbjct: 2    KKNKIISNAALCKLGCARKIPGFIRSEPFDLKGWLIPG-------------DNSQV---- 44

Query: 1171 KFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADL 1230
            + F ++  +   K    G + + SK +AD  EALIGA+   GG +AAL  MKWLG+D D 
Sbjct: 45   QNFDEELLMPSVKMYSRGRQKIKSKRVADVVEALIGAFLSSGGEVAALSFMKWLGVDIDF 104

Query: 1231 EVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASV---QEFYCYQ 1287
                  D  T         ++  ++ +ES + Y+F    LL EA+TH S    +   CYQ
Sbjct: 105  V-----DAPTPRHFPMNAEKLVNVRYLESLLDYKFHDPSLLVEALTHGSYMLPEIPRCYQ 159

Query: 1288 NL 1289
             L
Sbjct: 160  RL 161



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 12/98 (12%)

Query: 1055 FHIPSSLILEALT-------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQ 1107
            FH PS L++EALT        +  C     +RLE LGD+VL YAV+ HL+  YP    G 
Sbjct: 134  FHDPS-LLVEALTHGSYMLPEIPRC----YQRLEFLGDAVLDYAVTAHLYFKYPGLSPGF 188

Query: 1108 LSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV 1145
            ++  RS +V N    +      L  +I  ++ D +R +
Sbjct: 189  ITDLRSASVNNECYAQAAVKAGLHKHILHASQDLQRQI 226


>gi|194910778|ref|XP_001982226.1| GG12488 [Drosophila erecta]
 gi|190656864|gb|EDV54096.1| GG12488 [Drosophila erecta]
          Length = 2249

 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 132/345 (38%), Gaps = 107/345 (31%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI----------DADLEVSL-------VDD 1237
            K+IADC EALIGAY +  G   AL  M WLG+           A+ E  +       V+ 
Sbjct: 1901 KSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLEGANQEHRIPGSTKPNVEK 1960

Query: 1238 CIT--------RASLRSYVPRINEIKD--------IESKIGYEFTVKFLLQEAITHASVQ 1281
             +T        R+ L  + P   E  D         E  +GY+F  +  L +A+THAS  
Sbjct: 1961 MVTVYGAWPTPRSPLLHFAPNATEELDHLLSGFEVFEESLGYKFRDRSYLLQAMTHASYT 2020

Query: 1282 EFY---CYQNL------------------------------------------------- 1289
                  CYQ L                                                 
Sbjct: 2021 PNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHG 2080

Query: 1290 -YKHLQHCSTLLLSQITEYVKSFPKPGETT------------DSGPSMKAPKALGDLLES 1336
             +K  +H S  L   I  +V+   + G +             D    ++ PKALGD+ ES
Sbjct: 2081 FHKFFRHLSPGLNDVIDRFVRIQQENGHSISEEYYLLSEEECDDAEDVEVPKALGDVFES 2140

Query: 1337 IVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCTL 1394
            I GA+ +D+ ++LD VW ++  ++SP +      +P  P+REL+EL      F K     
Sbjct: 2141 IAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLA 2200

Query: 1395 KGEMVHAELRLQLKDVLLVG--EGQERSRKAAKGKAASQLLKKLE 1437
             G  V   +     DV   G   G  R+ + AK  AA   L++L+
Sbjct: 2201 DGRRVRVTV-----DVFCKGTFRGIGRNYRIAKCTAAKCALRQLK 2240



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1724 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1783

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L  Y+  + F+P   W+ P
Sbjct: 1784 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1812



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 96/190 (50%), Gaps = 25/190 (13%)

Query: 530 NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKAC-TYVKTKSYIVESTGASVTTDSSVN 588
            + Q  ++  ++ S+ + T+       EA    AC    + K +++  TGASV   +++ 
Sbjct: 768 QMAQYREIEQMLLSKCANTEPPEQEQSEAERFSACLAAYRPKPHLL--TGASVDLGTAIA 825

Query: 589 LIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ-TIVGPTSRNKNL 643
           L+++YC  LPSD +     +++    E A    ++  L LP N+P +  IVG     + L
Sbjct: 826 LVNKYCARLPSDTFTKLTALWRCTRNERAGVTMFQYTLRLPINSPLKHDIVGLPMPTQTL 885

Query: 644 SKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSENNLISKKNESLPG 688
           +++L  L+AC +LH++G L+D L P       ++E        EP +  ++   +E  P 
Sbjct: 886 ARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLSDE--PR 943

Query: 689 AGTTKRKELH 698
            GTTKR++ +
Sbjct: 944 PGTTKRRQYY 953



 Score = 64.7 bits (156), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG-----STTSVDA-LTPK 461
           +  LC +I+  +   A+V+   + ++    P L  L   Y T      +T   +A L  +
Sbjct: 488 SDTLCALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHR 547

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   + 
Sbjct: 548 RQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAY 607

Query: 522 FILML 526
            ++++
Sbjct: 608 HVILV 612



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 14/157 (8%)

Query: 903  DAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 958
            DA+  +D VV+  +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ 
Sbjct: 1125 DAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLT 1181

Query: 959  LIHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELL 1012
            + +  QPLL +  +    N L     N  G     S + +K        Q  + + PEL 
Sbjct: 1182 IQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELC 1240

Query: 1013 VRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEIN 1049
                 P S+ ++   LP ++ R+  L+LA  +R++++
Sbjct: 1241 TVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVS 1277



 Score = 47.0 bits (110), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 93/201 (46%), Gaps = 21/201 (10%)

Query: 44  FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           F PR +Q+++   A  RNTI  L   + K  IA+ L++++++  +  G  ++ ++L+  V
Sbjct: 15  FTPRDFQVELLAAAYERNTIICLGHRSSKEFIALKLLQELSRRGRQRG--RVSVYLSCEV 72

Query: 104 HLVHQQ---YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
               +    Y ++   TD  V +      +  +D  CW        V ++ P+  L  L 
Sbjct: 73  GTSTEPCSIYTMLTHLTDLRVWQEQPDMQI-PFD-HCW----TDYHVSILRPEGFLSLLE 126

Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSS 218
              L L  V  IV+++CH +       ++ +E    +   ++P++ G+ A P+   G   
Sbjct: 127 DRELLLSSVELIVLEDCHDSAVYQRIRRLFEEHIMPAAPVDRPRILGL-AGPLHSAG--- 182

Query: 219 AMDCE-GQISELESTLDSQVF 238
              CE  Q+S + +TL+  V 
Sbjct: 183 ---CELQQLSAMLATLEQSVL 200


>gi|89114032|gb|ABD61607.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 119/516 (23%), Positives = 205/516 (39%), Gaps = 95/516 (18%)

Query: 577  TGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA----YECELTLPSNAPFQ- 631
            TGASV   S++ L+++YC  LPSD +     +++    E A    ++  L LP N+P + 
Sbjct: 759  TGASVDLGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKH 818

Query: 632  TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP-------SVE--------EPSEN 676
             IVG     + L+++L  L+AC +LH++G L+D L P       ++E        EP + 
Sbjct: 819  DIVGLPMPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDE 878

Query: 677  NLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSG 736
             ++   +E  PG  T +R+  +          R        L+  +    C I  E  + 
Sbjct: 879  QIVQLSDEPRPGT-TKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTR 937

Query: 737  FVLLIESELDNDVGNFELELYLVSKTVKATV-SSSGQVHLDADQMSKAKCF----QELFF 791
               +   E D   G   L    + K    ++ + SG+V +   +++K +      Q +  
Sbjct: 938  GRKIYPPE-DAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSL-ELAKERVILTSEQIVCI 995

Query: 792  NGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINP 851
            NG     F                TN L    ++ L  P    N                
Sbjct: 996  NGFLNYTF----------------TNVLRLQKFLMLFDPDSTEN---------------- 1023

Query: 852  CASVVEFIKEKS--------FLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVD 903
            C  +V  +K  +        FL   Q N   GN+ P R  P +                D
Sbjct: 1024 CVFIVPTVKAPAGGKHIDWQFLELIQAN---GNTMP-RAVPDE---------ERQAQPFD 1070

Query: 904  AKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVL 959
             +  +D VV+  +  +     + + EI  + S  S F G   D+ +TF +Y+  KYG+ +
Sbjct: 1071 PQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLTI 1127

Query: 960  IHPGQPLLRLKQSHNPHNLLVN--FNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLV 1013
             +  QPLL +  +    N L     N  G     S + +K        Q  + + PEL  
Sbjct: 1128 QNTSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LVPELCT 1186

Query: 1014 RVDVPISVVKSLYLLPSVMQRLESLMLASQLREEIN 1049
                P S+ ++   LP ++ R+  L+LA  +R++++
Sbjct: 1187 VHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVS 1222



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L++TY   HEG+LS  RS  V N 
Sbjct: 1667 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1726

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  ++L  Y+  + F+P   W+ P
Sbjct: 1727 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1755



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)

Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG-----STTSVDA-LTPK 461
           +  LC +I+  +   A+V+   + ++    P L  L   Y T      +T   +A L  +
Sbjct: 433 SDTLCALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHR 492

Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
            Q+EVL+ FR    N+L  T V+EEG+ VP C+ V+R+D P T  SY+Q +GRAR   + 
Sbjct: 493 RQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAY 552

Query: 522 FILML 526
            ++++
Sbjct: 553 HVILV 557



 Score = 49.7 bits (117), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 83/209 (39%), Gaps = 52/209 (24%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI---------DADLEVSLV--------DD 1237
            K+IADC EALIGAY +  G   AL  M WLG+         D   +   +        ++
Sbjct: 1844 KSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNPEN 1903

Query: 1238 CIT--------RASLRSYVPRINE--------IKDIESKIGYEFTVKFLLQEAITHASVQ 1281
             +T        R+ L  + P   E         ++ E  +GY+F  +  L +A+THAS  
Sbjct: 1904 VVTVYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYT 1963

Query: 1282 EFY---CYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIV 1338
                  CYQ L          L   + +Y+ +           P   +P AL DL  ++V
Sbjct: 1964 PNRLTDCYQRL--------EFLGDAVLDYLIT-----RHLYEDPRQHSPGALTDLRSALV 2010

Query: 1339 GAVL---IDTKLNLDEVWRIFKPILSPIV 1364
               +   +  +    + +R   P L+ ++
Sbjct: 2011 NNTIFASLAVRHGFHKFFRHLSPGLNDVI 2039


>gi|391870973|gb|EIT80142.1| DEAD-box like helicase [Aspergillus oryzae 3.042]
          Length = 995

 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 110/517 (21%), Positives = 199/517 (38%), Gaps = 64/517 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  + +     N +  L TG GKT IA  ++ +  +  +S      IIF+APT  LV
Sbjct: 191 RDYQFNIAQKGLFHNLLVALPTGLGKTFIAATIMLNWFRWTES----AQIIFVAPTKPLV 246

Query: 107 HQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            QQ         + R  T     E       +EW ++          V  MTPQ L++ L
Sbjct: 247 AQQISACFGIAGIPRSQTTMLTGEAAPGIRAEEWQNKR---------VFFMTPQTLINDL 297

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR----KG 215
           +        +  +V+DE H ATG + Y +++K F  + +   +V  +TA+P       + 
Sbjct: 298 KSGIADPKRIVLLVVDEAHRATGGYAYVEVVK-FLRRYNQSFRVLALTATPGSTVESVQA 356

Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPS----------AKESCRFYDQSKF 265
           V   +D        E +LD + +     TE++ F  S          +K      DQ + 
Sbjct: 357 VIDGLDIARVEIRTEQSLDIREYVHSRNTEVQTFKNSEEMVLCMDLLSKTLQPLVDQLRT 416

Query: 266 CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELG 325
             +   G+  +  + F  + S+ Q    +  ++     K     +    A + + +D   
Sbjct: 417 LNA-YWGRDPMMLTAFGLTKSRQQWMASDAGRNAHFGLKGKVNAIFTVLASLAHAID--- 472

Query: 326 LICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG-- 383
            +  Y  +      +L  Q   E  +    Q +   +E    + + L    K     G  
Sbjct: 473 -LLKYHGITPFYRHLLHFQSNTEGQKGGKYQRQVVQDESFKKLINHLQPWTKNPEFIGHP 531

Query: 384 -FDYSKAVDLGYISTKLHELLQLFLSFGKSTQ---------VLCIIFVERIIAAKVVERF 433
             +Y K+V L +           F+  G+ +             +IFV    +A+ V R 
Sbjct: 532 KLEYLKSVVLNH-----------FMDAGEGSNGEASDSQSSTRIMIFVHFRDSAEEVTRV 580

Query: 434 VKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
           +K+   +    V     S    + +  K Q ++++ F+ G  N + AT + EEG+ +   
Sbjct: 581 LKRYEPMIRPHVFVGQSSAKGSEGMGQKTQLDIVQKFKKGTYNTIVATSIGEEGLDIGEV 640

Query: 494 SYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
             ++ +D   +    +Q  GR  R+     +L+L  G
Sbjct: 641 DLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMEG 677


>gi|448582933|ref|ZP_21646412.1| Hef nuclease [Haloferax gibbonsii ATCC 33959]
 gi|445730387|gb|ELZ81976.1| Hef nuclease [Haloferax gibbonsii ATCC 33959]
          Length = 871

 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 22/186 (11%)

Query: 29  DHAVDGPSSSTNSINFIPR-IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI 87
           DH +  PS       FI R +YQ+++   A+  +T+  L TG GKT +++++    AQ +
Sbjct: 11  DHPLLAPS-------FIERRLYQIRLAGTARNGHTLVCLPTGLGKTTVSLLVT---AQRL 60

Query: 88  KSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINK 144
              G K L  FLAPT  LV Q  D  R      D E+  + G    D+  ++ WQ+    
Sbjct: 61  HDVGGKSL--FLAPTKPLVQQHADFYREALNVPDDEIVVFTGDVRPDDR-AELWQE---- 113

Query: 145 NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVF 204
             +++ TPQ++ + L    +SL  V  +  DECH A+G++ Y  I  E YH     P V 
Sbjct: 114 AQIVIATPQVIENDLIGNRISLRDVTHLTFDECHRASGDYAYVYIA-ERYHADAEDPLVT 172

Query: 205 GMTASP 210
           GM+ASP
Sbjct: 173 GMSASP 178



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
            I+F E    A+ +  F+ +  F     V    G     D +T K Q+E L+ FR G+  
Sbjct: 374 VIVFTESRDTAEALTEFLSE-SFSVRRFVGQ--GDREGSDGMTQKEQQETLDKFRSGEFE 430

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILML 526
           +L +T V EEG+ VP    V+ F+   T    IQ +GR  RQ + + +++L
Sbjct: 431 VLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRKGRTGRQADGRVVVLL 481


>gi|171689324|ref|XP_001909602.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944624|emb|CAP70735.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1406

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 23/193 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ+++F+ + +RN I  ++TG+GKT +  +L   I + +  +   KLI FLAPTV L 
Sbjct: 7   RAYQVEMFQESLQRNIIVAMDTGSGKTQVRAIL--RIQEELGRS--PKLIWFLAPTVQLA 62

Query: 107 HQQYDVIRVHTDFEVEEYY-GAKGVDEW--DSQCWQKEINKNDVLVMTPQILLD-ALRKA 162
            QQ++VI          +  GA  V  W   +  WQ  +    ++V T QIL D A+  A
Sbjct: 63  AQQFEVIEKQIPGVQSRFICGADNVQAWKYKTGVWQAVLTNVRIVVSTYQILFDAAVAHA 122

Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDC 222
           F+ L+ +  +VIDE   +        +      +    P + G+TASP++R  ++     
Sbjct: 123 FVPLESISLLVIDEGEFS--------LSISLTMEGKPVPHILGLTASPLMRSNLAG---- 170

Query: 223 EGQISELESTLDS 235
              I  LE TLD+
Sbjct: 171 ---IETLEQTLDA 180



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 132/303 (43%), Gaps = 31/303 (10%)

Query: 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL-------THLTVAY 447
           +S K+  LLQ+  S   +   + I+FV       V+   +   P L       + +  + 
Sbjct: 341 LSRKVQALLQILASHKGNP--VGIVFVTERATTSVLSHVLSVHPVLESRYSVESMVGTSK 398

Query: 448 LTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
           L G   S   LT K   E L  FR GKVNLL AT V+EEG+ VP C+ VI FD P  + S
Sbjct: 399 LPGGKHSFLDLTTKEDIESLHRFRKGKVNLLVATSVLEEGIDVPVCNLVICFDKPSNLKS 458

Query: 508 YIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYV 567
           +IQ RGRAR + S+  ++ +    +   +  ++ +  +   +  L    E   L+     
Sbjct: 459 FIQRRGRARMNESELWVLFKDDQDQSLEEWKELEQEMKRKYEDELR---EIAGLEQMEQS 515

Query: 568 KTKSY---IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE----EAYEC 620
           +   Y      +TGA +T   +   +  +C  L + K+    P +     E    +A + 
Sbjct: 516 EADDYPKMTDPTTGAQMTIHDAKQHLDHFCSTLSTRKFVNWAPFYIIHDLEGNPIDARKP 575

Query: 621 ELTLPS-NAPFQTIVGPTSRNKNL-----SKQLVC----LEACEKLHQVGALNDHLLPSV 670
            L   + N P    + P+ R         S+   C     +A +KL++ G ++ ++LP+ 
Sbjct: 576 GLRAATVNLPVS--LSPSLRRAESLRAWPSEAFACKDAAFQAYKKLYEAGLIDKNMLPAR 633

Query: 671 EEP 673
             P
Sbjct: 634 TTP 636



 Score = 74.3 bits (181), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 97/228 (42%), Gaps = 47/228 (20%)

Query: 1061 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120
            L++ A+T  G   S   ER+E LGDS+LK+  + +         +  LSA +   V N  
Sbjct: 913  LVVTAITASGARRSIDYERIEFLGDSILKFCTTINC------SAQCFLSASKDKIVSNYR 966

Query: 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV 1180
            L K   D  L  YI ++A+   +W        RPV                 F +D    
Sbjct: 967  LCKAAIDFGLARYIINTAYTTDKW--------RPV-----------------FVEDYLER 1001

Query: 1181 VGKPCDMG--HRWMGSKTIADCAEALIGAYYVGGGLIAALYMM-------KWLGIDADLE 1231
               P   G   R M +KT+AD  EALIGA ++ GG+  AL  +       KW  ID   +
Sbjct: 1002 TDNPSSDGPKTREMSTKTLADVVEALIGASHISGGINKALACISLFLPEAKWQSIDHGRQ 1061

Query: 1232 VSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
            V L D+           P    +  +E  IGY F  K LL EA+TH S
Sbjct: 1062 V-LYDEAPDDE------PLPPNMHLLEKLIGYTFKKKSLLIEAMTHPS 1102


>gi|257052562|ref|YP_003130395.1| Hef nuclease [Halorhabdus utahensis DSM 12940]
 gi|256691325|gb|ACV11662.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
          Length = 833

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 26/173 (15%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ+++ + A   +T+  L TG GKT +++++    A+ + + G K L+  LAPT  LV
Sbjct: 24  RGYQIQLADAAAADHTLVCLPTGLGKTTVSLLVT---AERLHAVGGKSLL--LAPTKPLV 78

Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKND---------VLVMTPQILLD 157
            Q       H DF    Y  A  +D+ +   +  E+  +D         V++ TPQ++ +
Sbjct: 79  QQ-------HADF----YREALTIDDEEIVVFTGEVRPDDRAALWDDATVVIATPQVVEN 127

Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
            L  + + L  V     DECH A+G +PYT I  E YH+  + P V GM+ASP
Sbjct: 128 DLLGSRIDLSPVTHCTFDECHRASGEYPYTYIA-ERYHEDSDDPLVTGMSASP 179



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 8/127 (6%)

Query: 403 LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTP 460
           +Q+  + G       I+F E    A+ +  F+ +     H +V    G   T   D +T 
Sbjct: 361 MQIAETLGIHDGERVIVFTESRDTAETLTDFLGE-----HFSVEKFVGQSDTDGSDGMTQ 415

Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHN 519
             Q+E LE+FR G+  +L +T V EEG+ VP    V+ ++   T    IQ +GR  RQ  
Sbjct: 416 TEQQETLEAFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQTE 475

Query: 520 SQFILML 526
              ++++
Sbjct: 476 GAVVVLI 482


>gi|448597893|ref|ZP_21654818.1| Hef nuclease, partial [Haloferax alexandrinus JCM 10717]
 gi|445739354|gb|ELZ90863.1| Hef nuclease, partial [Haloferax alexandrinus JCM 10717]
          Length = 862

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 22/186 (11%)

Query: 29  DHAVDGPSSSTNSINFIPR-IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI 87
           DH +  PS       FI R +YQ+++   A+  +T+  L TG GKT +++++    AQ +
Sbjct: 11  DHPLLAPS-------FIERRLYQIRLAGTARDGHTLVCLPTGLGKTTVSLLVT---AQRL 60

Query: 88  KSNGFKKLIIFLAPTVHLVHQQYDVIR---VHTDFEVEEYYGAKGVDEWDSQCWQKEINK 144
              G K L  FLAPT  LV Q  D  R      D E+  + G    D+  ++ WQ+    
Sbjct: 61  HDVGGKSL--FLAPTKPLVQQHADFYREALTVPDDEIVVFTGDVRPDDR-AELWQE---- 113

Query: 145 NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVF 204
             +++ TPQ++ + L    +SL  V  +  DECH A+G++ Y  I  E YH     P V 
Sbjct: 114 AQIVIATPQVIENDLIGNRISLRDVTHLTFDECHRASGDYAYVYIA-ERYHADAENPLVT 172

Query: 205 GMTASP 210
           GM+ASP
Sbjct: 173 GMSASP 178



 Score = 53.5 bits (127), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
            I+F E    A+ +  F+ +  F     V    G     D +T   Q+E L+ FR G+  
Sbjct: 374 VIVFTESRDTAEALTEFLSE-SFSVRRFVGQ--GDREGSDGMTQNEQQETLDKFRNGEFE 430

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILML 526
           +L +T V EEG+ VP    V+ F+   T    IQ +GR  RQ + + +++L
Sbjct: 431 VLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRKGRTGRQADGRVVVLL 481


>gi|258566071|ref|XP_002583780.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907481|gb|EEP81882.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1083

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 116/518 (22%), Positives = 209/518 (40%), Gaps = 68/518 (13%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  +   A   N +  L TG GKT IA  ++ +     K       I+F+APT  LV
Sbjct: 308 REYQFNIAHRALFHNLLVALPTGLGKTFIAATVMLNWFNWTKD----AQIVFVAPTKPLV 363

Query: 107 HQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            QQ D       + R  T             +EW S+          V  MTPQ +++ L
Sbjct: 364 SQQVDACFHIVGIPRSKTTLLTGNTAPGIRAEEWQSKR---------VFFMTPQTIMNDL 414

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-VVRKGVSS 218
           +        +  +V+DE H ATG + Y +I+K F  + +N  +V  +TA+P    + V  
Sbjct: 415 KTGIADPKRIVLLVVDEAHRATGAYAYVEIVK-FLQRFNNSFRVLALTATPGATVEAVQE 473

Query: 219 AMDCEGQISEL----ESTLDSQVF-------------TIEDKTEMEVFVPSAKESC-RFY 260
            +D    IS +    E++LD + F             + E +T ME+F  + + +  +  
Sbjct: 474 VIDGLS-ISRIEIRTENSLDIREFIHKRNVDTITFDNSREMETAMELFAKALQPAVDKLR 532

Query: 261 DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYC 320
           +Q+ + G D         +K     +   G +   +       K +   +    A + + 
Sbjct: 533 NQNAYWGRDPIALTPFGLTKARQEWNASAGGRAASW-----PVKGMINSIFTVLASLAHA 587

Query: 321 LDEL---GLICAYEAVKICLEKVLKAQE--ECEIYRQSSLQCKYFLEEVLHVIGSALPLA 375
           +D L   G+   + ++    + VLK ++  +C     S    K  + + L V  S    +
Sbjct: 588 IDLLKYHGIGPFFRSLVSFEDSVLKEKKGGKCASQIVSDGNFKTLMRK-LRVWTS----S 642

Query: 376 DKIFLDFGFDYSKAVDLGY---ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432
           +        +Y K   L +   + +K++E  +        +    +IF     +A+ + R
Sbjct: 643 EDFIGHPKMEYLKQAILNHFLDVGSKINESAE--------SDTRVMIFSHFRDSAEEIVR 694

Query: 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPN 492
            +KK   +    V     +    + +  K Q +V+  F+ G  N + AT + EEG+ +  
Sbjct: 695 VLKKHQPMIRPHVFVGQANAKGSEGMDQKTQLDVVSKFKTGTYNTIVATSIGEEGLDIGE 754

Query: 493 CSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERG 529
              +I +D   +    +Q  GR  R+     IL+L +G
Sbjct: 755 VDLIICYDGHSSPIRMLQRMGRTGRKRAGNIILLLSKG 792


>gi|348680236|gb|EGZ20052.1| hypothetical protein PHYSODRAFT_312887 [Phytophthora sojae]
          Length = 890

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 129/532 (24%), Positives = 215/532 (40%), Gaps = 83/532 (15%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           N+  R YQL + E A   NT+  L TG GKT++A +++ +  +   +      I+F+APT
Sbjct: 231 NYSIRDYQLTIAEKALYHNTLVSLPTGLGKTLVAAVVMYNFYRWFPTGK----IVFMAPT 286

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEI---------NKNDVLVMTPQ 153
             LV QQ           ++  +   G+   D+   Q  +         N   V   TPQ
Sbjct: 287 KPLVAQQ-----------IKACHEIMGIPLPDTAELQGNVPPTMRRVLWNSRRVFFCTPQ 335

Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKP--KVFGMTASPV 211
            L + LR+   + +    IV+DE H ATGN+ Y  +++    K+   P  ++  ++A+P 
Sbjct: 336 SLQNDLRQGVCAAEKFVCIVVDEAHRATGNYAYCCVVQMIEAKT---PFFRILALSATPG 392

Query: 212 VRKGVSSAMDCEGQISELE--STLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ------- 262
            +  V   +    +IS +E  S  D  V       + EV V      CR   Q       
Sbjct: 393 AKFDVIQDVVANLRISHIESRSADDPDVKKYTHARQEEVIV------CRLGAQIVEVKTM 446

Query: 263 -----SKFCGSDLKGKL--------EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQ 309
                +      L+G +          SW    A   + +  +   Y         L   
Sbjct: 447 FLKCFTPIIQRLLRGNIIPFADPEKLSSWHVLQA---RERFRKSPSYASSRSAESDLALL 503

Query: 310 LSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQ---EECEIYRQSSLQCKYFLEEVLH 366
           +S  HAK L  L   GL    + +    E+  K +    + E+ + S  Q    LE  L 
Sbjct: 504 VSLLHAKSL--LTGHGLSSFRDQILNWAEERKKGKMSWSKREMLQSSEFQS---LELSLG 558

Query: 367 VIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RII 425
           V   A   A+         + K V L  +   L E  Q   + G ST+   I+F + R+ 
Sbjct: 559 VTEGATSSANTA------SHPKLVKLREV---LLEHFQRHSAAGSSTR--AIVFTQYRVS 607

Query: 426 AAKVVERFVKKVPFLT--HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDV 483
            +++V       P L          +G +      T KVQ+E++  FR G+ N+L AT +
Sbjct: 608 VSEIVALLRPLSPLLNVQPFIGQGSSGKSKENKGQTQKVQQEIVRRFRLGEFNVLVATCI 667

Query: 484 IEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILMLERGNLKQR 534
            EEG+ +     ++ FD   +    IQ  GR  R+   + I+++  G+ +++
Sbjct: 668 AEEGLDIGEVDLIVSFDALTSPVRMIQRMGRTGRKRVGRVIILVTEGDEQKK 719


>gi|448560390|ref|ZP_21633838.1| Hef nuclease [Haloferax prahovense DSM 18310]
 gi|445722040|gb|ELZ73703.1| Hef nuclease [Haloferax prahovense DSM 18310]
          Length = 864

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 22/186 (11%)

Query: 29  DHAVDGPSSSTNSINFIPR-IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI 87
           DH +  PS       FI R +YQ+++   A+  +T+  L TG GKT +++++    AQ +
Sbjct: 11  DHPLLAPS-------FIERRLYQIRLAGTARNGHTLVCLPTGLGKTTVSLLVT---AQRL 60

Query: 88  KSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINK 144
              G K L  FLAPT  LV Q  D  R      D E+  + G    D+  ++ WQ+    
Sbjct: 61  YDVGGKSL--FLAPTKPLVQQHADFYREALNVPDDEIVVFTGDVRPDDR-AELWQE---- 113

Query: 145 NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVF 204
             +++ TPQ++ + L    +SL  V  +  DECH A+G++ Y  I  E YH     P V 
Sbjct: 114 AQIVIATPQVIENDLIGNRISLRDVTHLTFDECHRASGDYAYVYIA-ERYHADAEDPLVT 172

Query: 205 GMTASP 210
           GM+ASP
Sbjct: 173 GMSASP 178



 Score = 53.9 bits (128), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
            I+F E    A+ +  F+ +  F     V    G     D +T   Q+E L+ FR G+  
Sbjct: 374 VIVFTESRDTAEALTEFLSE-SFSVRRFVGQ--GDREGSDGMTQNEQQETLDKFRSGEFE 430

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILML 526
           +L +T V EEG+ VP    V+ F+   T    IQ +GR  RQ + + +++L
Sbjct: 431 VLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRKGRTGRQADGRVVVLL 481


>gi|448304069|ref|ZP_21494014.1| Hef nuclease [Natronorubrum sulfidifaciens JCM 14089]
 gi|445592156|gb|ELY46348.1| Hef nuclease [Natronorubrum sulfidifaciens JCM 14089]
          Length = 811

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 15/172 (8%)

Query: 43  NFIPR-IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
           NF+ R +YQLK+   A   +T+  L TG GKT +++++    A+ +   G K L+  LAP
Sbjct: 19  NFLERRLYQLKLAGTAANDHTLVCLPTGLGKTTVSLLVT---ARRLDEVGGKSLM--LAP 73

Query: 102 TVHLVHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158
           T  LV Q  D  R      D E+  + G    D+   + W        V++ TPQ++ + 
Sbjct: 74  TKPLVQQHADFYRDALRIPDEEIVVFTGDVSPDDR-GELW----TDATVVMATPQVIEND 128

Query: 159 LRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
           L  + LSL  V  I  DECH ATG++ Y  I  E YH   + P V GM+ASP
Sbjct: 129 LVGSRLSLADVSHITFDECHRATGDYAYNYIA-ERYHADADDPLVTGMSASP 179



 Score = 50.1 bits (118), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 4/111 (3%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
            IIF E    A+ +  F+ +  F     V    G     D +T K Q+ VL+ FR  +  
Sbjct: 375 VIIFTESRDTAEALTEFLSE-SFDAKRFVGQ--GDREGSDGMTQKEQQAVLDEFRAAEFE 431

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILML 526
           +L +T V EEG+ VP    V+ ++   T    IQ +GR  RQ   + ++++
Sbjct: 432 VLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQSEGRVVVLM 482


>gi|218185362|gb|EEC67789.1| hypothetical protein OsI_35346 [Oryza sativa Indica Group]
          Length = 648

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 205/494 (41%), Gaps = 42/494 (8%)

Query: 43  NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
           N   R YQ K  E A   NT+  L TG GKT IA +++ +  +          I+F APT
Sbjct: 167 NVQVREYQKKFVEKALFTNTLVALPTGLGKTFIAAVVMYNYFRWFPEGK----IVFTAPT 222

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKG-VDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
             LV QQ +          E     KG +      C+ K      V  +TPQ+L + ++ 
Sbjct: 223 RPLVTQQIEACHNTVGIPQEWTIDLKGNLSPSKRSCFWKS---KRVFFVTPQVLQNDIQS 279

Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKP-KVFGMTASPVVRK------ 214
               ++ +  +VIDE H A+ N+ Y  +++E   ++   P ++  +TA+P  ++      
Sbjct: 280 GICMVNQLVCLVIDEAHRASRNYAYCVVVREL--EAARVPLRILALTATPGSKQPAIQNV 337

Query: 215 ----GVSSAMDCEGQISELESTLDSQ-VFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269
                +S  + C+    E+   +  + V  +E   + + F+P   E+ +  D+       
Sbjct: 338 INNLRISELVHCDESDPEVSRYIQRRTVEPLEVCMDSDKFIPVGDEAEQVNDKLLDVIRP 397

Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICA 329
              KL  +        S     QL   KD  D+       L+D   +I      L L+  
Sbjct: 398 HLVKLRSARVIDHRDASNWSPHQLRMLKDKFDQAPPPNIPLAD-KKEIGISFQALTLL-- 454

Query: 330 YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKA 389
           Y  +K+ L   +KA  +       S++ KY  E    V+       +  FL+        
Sbjct: 455 YGIMKMLLSYGIKAAHQ-------SIEAKY-KEGSWKVLTR-----NNTFLEVKKTMENF 501

Query: 390 VDLGYISTKLHELLQLFLS-FGKSTQ-VLCIIFVERIIAAKVVERFVKKVPFLTHLTVAY 447
           +  G +S K+  L+++ L  F K+ +    IIF       K +   ++ +        A+
Sbjct: 502 LSQGILSPKVRTLVEVLLDHFRKNPKDSRVIIFAHYRECVKEILCSLRNIDGELVRPAAF 561

Query: 448 LTGSTT--SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTV 505
           +  S+T   +   T K+Q+ +L  FR G+ N+L AT + EEG+ +     V+ FD   + 
Sbjct: 562 IGQSSTGDQLKGQTQKMQQAILHKFRSGEYNILVATSIGEEGLDIMEVDLVVCFDANISA 621

Query: 506 SSYIQSRGRARQHN 519
              IQ  GR  + N
Sbjct: 622 LRMIQRMGRTGRKN 635


>gi|448573743|ref|ZP_21641226.1| Hef nuclease [Haloferax lucentense DSM 14919]
 gi|445718649|gb|ELZ70339.1| Hef nuclease [Haloferax lucentense DSM 14919]
          Length = 855

 Score = 84.0 bits (206), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 22/186 (11%)

Query: 29  DHAVDGPSSSTNSINFIPR-IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI 87
           DH +  PS       FI R +YQ+++   A+  +T+  L TG GKT +++++    AQ +
Sbjct: 11  DHPLLAPS-------FIERRLYQIRLAGTARDGHTLVCLPTGLGKTTVSLLVT---AQRL 60

Query: 88  KSNGFKKLIIFLAPTVHLVHQQYDVIR---VHTDFEVEEYYGAKGVDEWDSQCWQKEINK 144
              G K L  FLAPT  LV Q  D  R      D E+  + G    D+  ++ WQ+    
Sbjct: 61  HDVGGKSL--FLAPTKPLVQQHADFYREALTVPDDEIVVFTGDVRPDDR-AELWQE---- 113

Query: 145 NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVF 204
             +++ TPQ++ + L    +SL  V  +  DECH A+G++ Y  I  E YH     P V 
Sbjct: 114 AQIVIATPQVIENDLIGNRISLRDVTHLTFDECHRASGDYAYVYIA-ERYHADAENPLVT 172

Query: 205 GMTASP 210
           GM+ASP
Sbjct: 173 GMSASP 178



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
            I+F E    A+ +  F+ +  F     V    G     D +T   Q+E L+ FR G+  
Sbjct: 374 VIVFTESRDTAEALTEFLSE-SFSVRRFVGQ--GDREGSDGMTQNEQQETLDKFRNGEFE 430

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILML 526
           +L +T V EEG+ VP    V+ F+   T    IQ +GR  RQ + + +++L
Sbjct: 431 VLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRKGRTGRQADGRVVVLL 481


>gi|448389152|ref|ZP_21565564.1| Hef nuclease [Haloterrigena salina JCM 13891]
 gi|445669056|gb|ELZ21671.1| Hef nuclease [Haloterrigena salina JCM 13891]
          Length = 820

 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 14/167 (8%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQLK+   A   +T+  L TG GKT +++++    A+ ++  G K L+  LAPT  LV
Sbjct: 24  RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVT---ARRLEEVGGKSLM--LAPTKPLV 78

Query: 107 HQQYDVIRVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            Q  D  R      D E+  + G    D+  +  W++      V++ TPQ++ + L  + 
Sbjct: 79  QQHADFYREALQIPDGEIVVFTGDVSPDDR-AAMWEEAT----VVMATPQVIENDLVGSR 133

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
           +SL  V  I  DECH ATG++ Y  I  E YH     P V GM+ASP
Sbjct: 134 ISLSDVTHITFDECHRATGDYAYNYIA-ERYHADAQDPLVTGMSASP 179



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
           G     D +T K Q++VL+ FRGG+  +L +T V EEG+ VP    V+ ++   T    I
Sbjct: 405 GDREGSDGMTQKEQQDVLDQFRGGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSI 464

Query: 510 QSRGR-ARQHNSQFILML 526
           Q +GR  RQ   + ++++
Sbjct: 465 QRKGRTGRQSEGRVVVLM 482


>gi|294881176|ref|XP_002769282.1| hypothetical protein Pmar_PMAR007696 [Perkinsus marinus ATCC 50983]
 gi|239872560|gb|EER02000.1| hypothetical protein Pmar_PMAR007696 [Perkinsus marinus ATCC 50983]
          Length = 1394

 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 19/180 (10%)

Query: 47  RIYQLKVFE-VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNG----FKKLIIFLAP 101
           R YQ +V + + + R+T+A + TG+GKT++AV L+ +  +  +        KK  IF AP
Sbjct: 4   REYQAEVLDKIRQHRSTVAFMPTGSGKTLVAVRLLHERVEVQRRRQEEGELKKACIFTAP 63

Query: 102 TVHLVHQQYDVIRVH---TDFEVEEYYG-AKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
              L HQQ   I  H    D +V    G  K    W+ + W K + ++ VLV  P++L  
Sbjct: 64  NKVLCHQQAKYIEKHLGHADAKVIILTGEMKDTVSWEEEEWAKTLRESSVLVCVPEVLRR 123

Query: 158 ALRKAFLSLDIVCFIVIDECHH------ATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211
           AL   ++  D +  I+ DECHH      A   H Y  + +     +    +  G+TASP+
Sbjct: 124 ALESGYVKADSIDTIIFDECHHCVSKNGANSGHAYCHLAQ----LAKGAERFVGLTASPL 179



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 112/263 (42%), Gaps = 41/263 (15%)

Query: 388 KAVDLGYISTKLHELLQLFLSFGKS---TQVLCIIFVERIIAAKVVERFVKKVPFLTHLT 444
           + +++G  + KL ++ +L    G S        IIFV + + A+ +            L 
Sbjct: 419 RLLEVGGDADKLFKMGELLYVGGDSELPDYNAAIIFVNQRLLARAIA---------ASLD 469

Query: 445 VAYLTGSTTSVDALTPKVQKEVLESF-----RGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
             Y  G        +   Q E +E F     R  K  +L AT V +EG+ VP C  VI +
Sbjct: 470 CFYCVGGRYE----SASTQAEAIERFKETAKRDDKDAILIATSVCDEGVDVPVCDRVILW 525

Query: 500 DLPKTVSSYIQSRGRAR--QHNSQFILML-----ERGNLKQ-----RNKLFDIIRSERSV 547
           D+P  V  YIQ RGRAR  +  S+F LM+     E+G  K      +NK   + R     
Sbjct: 526 DMPPNVRCYIQRRGRARSLEPPSKFFLMVGDQEEEKGCAKAALTDFQNKEEQMARLVDFW 585

Query: 548 TDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEML-PSDKYYTPK 606
                  D E+        V     ++   G  +T   +  ++  +C  L  +D++++P+
Sbjct: 586 IQCGTDDDEESEDAGIVPAV-----VIGRDGVRITCRRAKEVLFTFCSTLRATDEFFSPE 640

Query: 607 PIFKYKSAEEA--YECELTLPSN 627
           P    +S E++  Y   + LPS+
Sbjct: 641 PWIYTESDEDSGRYRTVVVLPSS 663


>gi|448381161|ref|ZP_21561428.1| Hef nuclease [Haloterrigena thermotolerans DSM 11522]
 gi|445663513|gb|ELZ16261.1| Hef nuclease [Haloterrigena thermotolerans DSM 11522]
          Length = 815

 Score = 83.6 bits (205), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 14/167 (8%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQLK+   A   +T+  L TG GKT +++++    A+ ++  G K L+  LAPT  LV
Sbjct: 26  RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVT---ARRLEEVGGKALM--LAPTKPLV 80

Query: 107 HQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            Q  D  R      D E+  + G    D+  ++ W+       V++ TPQ++ + L  + 
Sbjct: 81  QQHADFYREALQIPDKEIVVFTGDVSPDDR-AEMWESAT----VVMATPQVIENDLVGSR 135

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
           +SL  V  +  DECH ATG++ Y  I  E YH    +P V GM+ASP
Sbjct: 136 ISLADVTHVTFDECHRATGDYAYNYIA-ERYHADAKRPLVTGMSASP 181



 Score = 49.3 bits (116), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
           G     D +T   Q+ VL+ FR G+  +L +T V EEG+ VP    V+ ++   T    I
Sbjct: 407 GDREGSDGMTQTEQQAVLDEFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSI 466

Query: 510 QSRGR-ARQHNSQFILML 526
           Q +GR  RQ   + ++++
Sbjct: 467 QRKGRTGRQSEGRVVVLM 484


>gi|389851479|ref|YP_006353713.1| Hef nuclease [Pyrococcus sp. ST04]
 gi|388248785|gb|AFK21638.1| Hef nuclease [Pyrococcus sp. ST04]
          Length = 758

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 46  PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
           PR+YQ  ++   K RN + VL TG GKT+IA M+I D    ++  G K  ++ LAPT  L
Sbjct: 10  PRVYQEVIYAKCKDRNCLIVLPTGLGKTIIA-MMIADYR--LRKYGGK--VLMLAPTKPL 64

Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
           V Q  +  R       ++     G  E       K   K  V++ TPQ + + +    +S
Sbjct: 65  VLQHAETFRKFFALPSDKIVALTG--ETSPNERAKAWAKAKVIIATPQTIENDILVGRIS 122

Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
           L+ V  ++ DE H A GN+ Y  I KE+  ++ N P V G+TASP
Sbjct: 123 LEDVVLLIFDEAHRAVGNYAYVYIAKEYRTQAKN-PLVIGLTASP 166



 Score = 47.8 bits (112), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 457 ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD-LPKTVSSYIQSRGRA 515
            ++ + QK VL+ F  G+ N+L AT V EEG+ VP    V+ ++ +P  + S IQ RGR 
Sbjct: 402 GMSQREQKLVLDEFSRGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRS-IQRRGRT 460

Query: 516 RQHN-SQFILMLERGN 530
            +H   + ++++ +G 
Sbjct: 461 GRHRPGRVVILMAKGT 476


>gi|170033786|ref|XP_001844757.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
 gi|167874834|gb|EDS38217.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
          Length = 2270

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 131/350 (37%), Gaps = 102/350 (29%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI--------------------DADLEV-- 1232
            K++ADC EALIGAY +  G   AL +M WLGI                     A  EV  
Sbjct: 1920 KSVADCVEALIGAYLIECGPRGALLLMAWLGIRVLPVCEQPFDPTAPRIPGSSAPYEVNG 1979

Query: 1233 ----SLVDDCIT-RASLRSYVPR--------INEIKDIESKIGYEFTVKFLLQEAITHAS 1279
                S+    I  R+ L ++ P         ++     E  +GY F  +  L +A+THAS
Sbjct: 1980 KQIQSIYGYWIPPRSPLLTHAPNPEKSLEHLLDGYSAFEDSLGYRFQDRSYLLQAMTHAS 2039

Query: 1280 V---QEFYCYQNL----------------------------------------------- 1289
                +   CYQ L                                               
Sbjct: 2040 YCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVR 2099

Query: 1290 ---YKHLQHCSTLLLSQITEYVKSFPKPGETT------------DSGPSMKAPKALGDLL 1334
               +K+ +H S  L   I  +V+     G +             D    ++ PKALGD+ 
Sbjct: 2100 HDFHKYFRHLSPGLNDVIDRFVRIQQDNGHSISEEYYLISEDECDEAEDVEVPKALGDVF 2159

Query: 1335 ESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKENC 1392
            ES+ GA+ +D+ ++LD VWR+++ ++ P +      +P  P+REL+EL      F K   
Sbjct: 2160 ESVAGAIFLDSNMSLDAVWRVYRGMMGPEIEQFSNSVPKSPIRELLELEPETAKFGKPEK 2219

Query: 1393 TLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKR 1442
               G  V   + +  K          R  K    K A + LKK+ +  KR
Sbjct: 2220 LADGRRVRVTVEVFGKGTFRGIGRNYRIAKCTAAKCALRQLKKMGLINKR 2269



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 101/208 (48%), Gaps = 14/208 (6%)

Query: 36  SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNG-FKK 94
           + + ++ +  PR +Q+++   A+ RN I  L   + K  IA+ LI ++   ++S    +K
Sbjct: 6   TDAIHTTSLTPRDFQVELLASARERNLILCLAHNSNKEFIALKLIHELGFQLRSTAQRRK 65

Query: 95  LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
             ++++    +    Y ++R  TD +V    G    DE D   W++ +    V++   + 
Sbjct: 66  RTLYISNNDSV----YSLMRNLTDLKVVHVDG----DEPD---WERIVADYQVIIANERK 114

Query: 155 LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRK 214
            LDA+   +L LD V  +VIDECH   GN    ++  E+Y +   +PK+ G+ A P+   
Sbjct: 115 CLDAVVCGYLELDEVNLLVIDECHKIYGNVEIAELFSEYYERCRERPKILGL-AGPLHNA 173

Query: 215 GVSSAMDCEGQISELESTLDSQVFTIED 242
           G         ++ +LE  L ++  T  D
Sbjct: 174 GCIPGR-LSAELEQLERCLKAKAETASD 200



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 102/221 (46%), Gaps = 36/221 (16%)

Query: 940  TDDDSKTFVN----------YFSEKYGIVLIHPGQPLLRLKQSHNPHNLL-VNFNDGGGS 988
            T+D   T++N          YF EKY I  I  G    R     N  NLL VN N     
Sbjct: 1623 TNDRGVTYMNLEGFYDLNRPYFPEKYSI--IGTGDVFDRF----NDENLLEVNEN----- 1671

Query: 989  GKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
                    N K    ++  P  L+VR     +  ++L  +P+V   +   +   +   + 
Sbjct: 1672 --------NEKTITFNIEYP--LVVRNQTKDNQKRTLPSVPNVATAINGSL--GEFSFDY 1719

Query: 1049 NCHSRNFHIPS-SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQ 1107
                 N   PS S+IL+ALT     +  ++ERLE +GDS LKYA++ +L+ TY   HEG+
Sbjct: 1720 QPDLTNHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYENVHEGK 1779

Query: 1108 LSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
            LS  RS  V N  L++LG  + L   +  + F+P   W+ P
Sbjct: 1780 LSHLRSKQVSNLNLYRLGRRKVLGESMIATKFEPHDNWLPP 1820



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 11/115 (9%)

Query: 420 FVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALT-PK-------VQKEVLESFR 471
           F  +I+ + + E  V+  P L+++ V Y      S + +T PK        Q+EVL+ FR
Sbjct: 497 FTTKILYSLLYEA-VRSDPQLSYINVQYTVDK--SANPITEPKEAEVEHRKQEEVLKRFR 553

Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
             + NLL  T V+EEG+ +P C+ VIR++ P +  SY+Q +GRAR  ++  IL++
Sbjct: 554 MHECNLLIGTSVLEEGIDLPKCNLVIRWNEPVSYRSYVQCKGRARAPSAYHILIV 608



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 101/453 (22%), Positives = 170/453 (37%), Gaps = 109/453 (24%)

Query: 643  LSKQLVCLEACEKLHQVGALNDHLLPSVEEPS---------------ENNLISKKNESLP 687
            L++++    AC  LH  G ++D L P  +E                 +  ++S+ +E  P
Sbjct: 910  LARRMAAYIACRVLHNAGEIDDSLHPIGKESFRAFEADWEDFELESIDAQIVSENSE--P 967

Query: 688  GAGTTKRKELHGTTPIRALSG-RWGEKCGVILHAYKFNFACSIVTE-------IY----- 734
              GTTKR++ +      A S  R    C V L+       C I  E       IY     
Sbjct: 968  RPGTTKRRQYYYKRIASAFSECRPTVGCKVYLYHINMTLQCPIPEEQNTRGRRIYPPEDS 1027

Query: 735  -SGFVLLIESELDNDVGNFELELYLVSKTVKATVS-SSGQVHLDADQMSKAKCFQELFFN 792
              GF +L  ++L   V  F +  +  S  VK  ++  + +  L+ +Q+ K      LF N
Sbjct: 1028 PQGFGILT-AKLIPKVSAFPI--FTRSGEVKVALNLCAERTILNQEQLDKIN----LFIN 1080

Query: 793  GLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTF-------GDGSWRIN 845
              F K+    K                    Y+ L  P+   N F             ++
Sbjct: 1081 YTFTKVLRLQK--------------------YLMLYDPMATENCFFIVPTITRQSVVTVD 1120

Query: 846  WSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAK 905
            W  I+  A  V+  K  +F+               RT                N + D  
Sbjct: 1121 WDFIDIIAKSVD--KMPTFIPDEN-----------RT----------------NYTFDNI 1151

Query: 906  NLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIH 961
              +D VV+  +  +     + + EI  + S +S F G    +  TF  Y+ +KY I + +
Sbjct: 1152 QFRDAVVMPWYRNQDQPQYFYVAEICYHLSPKSSFPGL---NYSTFEEYYYKKYNIQIQN 1208

Query: 962  PGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHMPPELLVRV 1015
              QPLL +  +    N L     N  G     S + +K        Q  + + PEL    
Sbjct: 1209 CKQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LIPELCTIH 1267

Query: 1016 DVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
              P S+ ++   LP ++ R+ +L+LA ++R+E+
Sbjct: 1268 PFPASLWRAAVCLPCILYRINALLLADEIRKEV 1300


>gi|433438864|ref|ZP_20408396.1| Hef nuclease, partial [Haloferax sp. BAB2207]
 gi|432189197|gb|ELK46322.1| Hef nuclease, partial [Haloferax sp. BAB2207]
          Length = 504

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 22/186 (11%)

Query: 29  DHAVDGPSSSTNSINFIPR-IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI 87
           DH +  PS       FI R +YQ+++   A+  +T+  L TG GKT +++++    AQ +
Sbjct: 11  DHPLLAPS-------FIERRLYQIRLAGTARDGHTLVCLPTGLGKTTVSLLVT---AQRL 60

Query: 88  KSNGFKKLIIFLAPTVHLVHQQYDVIR---VHTDFEVEEYYGAKGVDEWDSQCWQKEINK 144
              G K L  FLAPT  LV Q  D  R      D E+  + G    D+  ++ WQ+    
Sbjct: 61  HDVGGKSL--FLAPTKPLVQQHADFYREALTVPDDEIVVFTGDVRPDDR-AELWQE---- 113

Query: 145 NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVF 204
             +++ TPQ++ + L    +SL  V  +  DECH A+G++ Y  I  E YH     P V 
Sbjct: 114 AQIVIATPQVIENDLIGNRISLRDVTHLTFDECHRASGDYAYVYIA-ERYHADAENPLVT 172

Query: 205 GMTASP 210
           GM+ASP
Sbjct: 173 GMSASP 178



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
            I+F E    A+ +  F+ +  F     V    G     D +T   Q+E L+ FR G+  
Sbjct: 374 VIVFTESRDTAEALTEFLSE-SFSVRRFVG--QGDREGSDGMTQNEQQETLDKFRNGEFE 430

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILML 526
           +L +T V EEG+ VP    V+ F+   T    IQ +GR  RQ + + +++L
Sbjct: 431 VLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSIQRKGRTGRQADGRVVVLL 481


>gi|433592991|ref|YP_007282487.1| ERCC4-like helicase [Natrinema pellirubrum DSM 15624]
 gi|448335437|ref|ZP_21524582.1| Hef nuclease [Natrinema pellirubrum DSM 15624]
 gi|433307771|gb|AGB33583.1| ERCC4-like helicase [Natrinema pellirubrum DSM 15624]
 gi|445616961|gb|ELY70569.1| Hef nuclease [Natrinema pellirubrum DSM 15624]
          Length = 813

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 14/167 (8%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQLK+   A   +T+  L TG GKT +++++    A+ ++  G K L+  LAPT  LV
Sbjct: 26  RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVT---ARRLEEVGGKSLM--LAPTKPLV 80

Query: 107 HQQYDVIRVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            Q  D  R      D E+  + G    D+  ++ W+       +++ TPQ++ + L  + 
Sbjct: 81  QQHADFYREALQIPDEEIVVFTGDVSPDDR-AEMWESAT----IVMATPQVIENDLVGSR 135

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
           +SL  V  +  DECH ATG++ Y  I  E YH    +P V GM+ASP
Sbjct: 136 ISLADVTHVTFDECHRATGDYAYNYIA-ERYHADAKRPLVTGMSASP 181



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
           G     D +T   Q++VL+ FR G+  +L +T V EEG+ VP    V+ ++   T    I
Sbjct: 407 GDREGSDGMTQTEQQDVLDEFRAGEFEVLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSI 466

Query: 510 QSRGR-ARQHNSQFILML 526
           Q +GR  RQ   + ++++
Sbjct: 467 QRKGRTGRQSEGRVVVLM 484


>gi|45358958|ref|NP_988515.1| Hef nuclease [Methanococcus maripaludis S2]
 gi|45047824|emb|CAF30951.1| Helix-hairpin-helix motif:DEAD/DEAH box helicase:Helicase,
           C-terminal:Helix-hairpin-helix DNA-binding, class
           1:ERCC4 domain [Methanococcus maripaludis S2]
          Length = 752

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 115/490 (23%), Positives = 210/490 (42%), Gaps = 57/490 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           RIYQ  V   A ++NT+ VL TG GKT IA + I  I    K NG    ++ +AP+  LV
Sbjct: 16  RIYQQLVVASALKQNTLCVLGTGLGKTAIAALTIAGILS--KRNG---KVLIIAPSRPLV 70

Query: 107 HQQYDVIRVHTDFEVEEYY--GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            Q +  +    + + E+      K   +     W+       + + TPQ+  + +    L
Sbjct: 71  DQHFKSMNQFLNIDSEKIVILNGKISPKKREAMWES----GKIFIATPQVAENDIISKIL 126

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEG 224
                  ++ DE HH TGNH YT +  +F  KS     V G+TASP       S +D   
Sbjct: 127 KPSQFSLLIADEAHHTTGNHSYTFVANKFKKKSH----VLGLTASP------GSNID--- 173

Query: 225 QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
           +I E+   L  +   I+ + + +V    AK   R              ++E+   +F+ +
Sbjct: 174 RIFEICGNLGIEHVEIKTEEDPDVSPYVAKVKMR------------PKRVELP-EEFEVN 220

Query: 285 LSKLQGSQLNCYKDMDDKH-----KTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE- 338
           L+ L+ +  +  +D+ +          + +L   + KI+   D +     YE ++I  E 
Sbjct: 221 LNLLKNALKDRLRDLKENRVIHSITVNKSELLGLNKKIMAMDDNI----KYEMLRISSEA 276

Query: 339 -KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397
            K+  A E  E   +S+    Y+ + +     SA  + +             +D+ +   
Sbjct: 277 VKLEHAIEMLETQGKSTF-LNYYQKLLTQNTKSAKEITNDPRFIQAVKNLNELDIEH--P 333

Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA 457
           K  ++L++     K  + + I    R    K+V+   +         + ++  S      
Sbjct: 334 KYEKMLEIVKEILKENEKIVIFAQYRDTVQKIVDLLSEN----EIEAIMFVGQSNKDGKG 389

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-AR 516
           ++ K Q + +E F+  + N+L +T V EEG+ + + +YV+ ++   +    IQ RGR AR
Sbjct: 390 MSQKEQAKAIEKFK-NEANVLVSTSVSEEGIDISSVNYVLFYEPVPSEIRMIQRRGRAAR 448

Query: 517 QHNSQFILML 526
               Q I+++
Sbjct: 449 GEGGQVIVLI 458


>gi|355683392|gb|AER97092.1| DEAD box polypeptide 58 [Mustela putorius furo]
          Length = 928

 Score = 83.6 bits (205), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 27/216 (12%)

Query: 46  PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVML----IKDIAQAIKSNGFKKLIIFLA 100
           PR YQL++   AK  +NT+    TG GKT++++++    +K   Q  K       ++F A
Sbjct: 242 PRNYQLELTLPAKEGKNTLICAPTGCGKTLVSLLICEHHLKKFPQERKGK-----VVFFA 296

Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKE--INKNDVLVMTPQILLDA 158
             + L  QQ  +    +D+  +  Y   G+    ++    E  +  ND++++TPQIL+++
Sbjct: 297 IQLPLYEQQKSIF---SDYFEKLGYKVAGISGVTAETVSVEQIVENNDIIILTPQILVNS 353

Query: 159 LRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVV 212
           LR   L SL +   ++ DECH+   NHPY  IM  +  +     SD  P+V G+TAS   
Sbjct: 354 LRNGTLPSLSVFTLMIFDECHNTGKNHPYNMIMFNYIDQKLGGSSDPLPQVIGLTASVGT 413

Query: 213 --RKGVSSAMDCEGQISELESTLDSQVF-TIEDKTE 245
              K    AM+    I +L ++LD+ V  T++D  E
Sbjct: 414 GDAKNTKEAME---YICKLCASLDTAVIATVKDNLE 446



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVLESFR-GGK 474
           I+FV+       +++++++   L+ L    LTG   T     +T   QK  L++FR  G 
Sbjct: 635 ILFVKTRALVDALKKWIEENSELSFLNPGILTGRGKTNQNTGMTLPAQKCALDAFRTDGD 694

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR 534
             +L AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+    ++ ++
Sbjct: 695 KKILIATSVADEGIDIAECNLVILYEYVGNVIRMIQTRGRGRAKGSKCFLLTSNADVIEK 754

Query: 535 NKL 537
            K+
Sbjct: 755 EKI 757


>gi|393909534|gb|EFO22079.2| hypothetical protein LOAG_06406 [Loa loa]
          Length = 989

 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 130/552 (23%), Positives = 226/552 (40%), Gaps = 74/552 (13%)

Query: 45  IPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
           I R YQ ++ + A   RNT+    TG GKT++A  + ++     + N     I F     
Sbjct: 263 ILRKYQEELAQPAYNGRNTLICAPTGTGKTVVAASIARNHLIMGRKNNLHTKISFFVTNT 322

Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC-----WQKEINKNDVLVMTPQILLDA 158
             + QQ            E++ G +    + S         + I   D++V+TPQ++++ 
Sbjct: 323 TFLEQQTKCF--------EKFVGHRWKVVFLSGITVNTPIAETIAAYDLIVITPQLIVNL 374

Query: 159 LRKAF------LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS------DNK--PKVF 204
           L           SL     +  DE HH  GNHPY  IM  ++         D K  P+V 
Sbjct: 375 LNTCNEDNGLPFSLSSFSLMFFDEAHHTDGNHPYNVIMNNYHDMKHAGKVLDGKRLPQVV 434

Query: 205 GMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQ 262
           G+TAS  +    +++   E  I ++ + LD  V +   E+  E+  F   A +  +    
Sbjct: 435 GLTASLGIGNAQNTSEAVEYFI-KICANLDITVLSYVHENIDELRAFTSIAADETKLVAS 493

Query: 263 SKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSD---------Y 313
           +    S   G L++ + +F+  L ++  S     K  +  ++ + ++L +         Y
Sbjct: 494 NVTTYSVAVGILDL-FRRFEGILDRIARSVSISDKIHEPSNQEMLRRLQNPPHDKFSKVY 552

Query: 314 HAKILYCLDELGLICAYEA-----VKICLE--KVLKAQEECEIYRQSSLQCKYFLEE--- 363
                  L +   +   E      +  CL+   +L    E  I+  S +  KYF  E   
Sbjct: 553 ETWFSQLLVKFVPVAKLEKENRFLIMTCLQFIGILFRSLEHYIHFPSYVAKKYFENEFNL 612

Query: 364 VLHVIGSALPLADKIFLDFGFDYSKAVDLGYI------STKLHELL-QLFLSFGKSTQVL 416
           V H     L            D  +A  L  +      +   +ELL +L   F K     
Sbjct: 613 VRHTANQEL-----------VDIMQACPLKTVVGNNADNELYNELLRELHGQFAKQKDGR 661

Query: 417 CIIFVE-RIIAAKVVERFVKKVPF-LTHLTVAYLTGSTTSVDALTPKV--QKEVLESFRG 472
            I+FV  R  A ++ E   K     +  +   ++TG   S +     +  Q+++L  F  
Sbjct: 662 AIVFVATRDFAGQLSEELNKDESLQMLDIKSDFITGINASGENGGQSINQQRDILARFTS 721

Query: 473 GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK 532
           G + +L AT V EEG+ +  C+ VI++D      +++Q RGR R  NS+ +L+     L+
Sbjct: 722 GDIKILCATSVAEEGIDIQKCNLVIKYDYVTNEIAHVQRRGRGRAANSRCLLLTCDPKLQ 781

Query: 533 QRNKLFDIIRSE 544
            R +  +IIR +
Sbjct: 782 TREEK-NIIREQ 792


>gi|354459713|pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
          Length = 555

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 18/217 (8%)

Query: 46  PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
           PR YQL++   AK+ +NTI    TG GKT +++++ +   +     G K  ++F A  + 
Sbjct: 5   PRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC-GQKGKVVFFANQIP 63

Query: 105 LVHQQYDVIRVHTD---FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
           +  QQ  V   + +   + +    GA      DS   Q  I  ND++++TPQIL++ L  
Sbjct: 64  VYEQQATVFSRYFERLGYNIASISGATS----DSVSVQHIIEDNDIIILTPQILVNNLNN 119

Query: 162 -AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HK----SDNKPKVFGMTASPVVRKG 215
            A  SL +    + DECH+ + NHPY +I   +  HK     D  P+V G+TAS  V   
Sbjct: 120 GAIPSLSVFTLXIFDECHNTSKNHPYNQIXFRYLDHKLGESRDPLPQVVGLTASVGV-GD 178

Query: 216 VSSAMDCEGQISELESTLDSQVF-TIEDK-TEMEVFV 250
             +A +    I +L + LD+ V  T+ D   E+E  V
Sbjct: 179 AKTAEEAXQHICKLCAALDASVIATVRDNVAELEQVV 215



 Score = 63.5 bits (153), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS--TTSVDALTPKVQKEVLESFRG-GK 474
           I+FV+       +++++++ P L+ L    LTG   T      T   QK VLE+FR  G 
Sbjct: 393 ILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGXTLPAQKCVLEAFRASGD 452

Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQR 534
            N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R  +S+  L+    ++ ++
Sbjct: 453 NNILIATSVADEGIDIAECNLVILYEYVGNVIKXIQTRGRGRARDSKCFLLTSSADVIEK 512

Query: 535 NK 536
            K
Sbjct: 513 EK 514


>gi|157120736|ref|XP_001659747.1| dicer-1 [Aedes aegypti]
 gi|108883036|gb|EAT47261.1| AAEL001612-PA [Aedes aegypti]
          Length = 2193

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 131/351 (37%), Gaps = 104/351 (29%)

Query: 1195 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLV-----------------DD 1237
            K++ADC EALIGAY +  G   AL +M WLGI   L V  V                  D
Sbjct: 1843 KSVADCVEALIGAYLIECGPRGALLLMAWLGIRV-LPVYEVPYDENNPKVPGSSQRYEKD 1901

Query: 1238 CITRASLRSY-VPR------------------INEIKDIESKIGYEFTVKFLLQEAITHA 1278
             I   S+  Y VP                   ++     E  +GY+FT +  L +A+THA
Sbjct: 1902 GIAMQSVYGYWVPPKSPLLMYAPNPQQTLEHLLDGYSAFEDSLGYQFTDRSYLLQAMTHA 1961

Query: 1279 SV---QEFYCYQNL---------------------------------------------- 1289
            S    +   CYQ L                                              
Sbjct: 1962 SYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAV 2021

Query: 1290 ----YKHLQHCSTLLLSQITEYVKSFPKPG------------ETTDSGPSMKAPKALGDL 1333
                +K+ +H S  L   I  +V+     G            +  D    ++ PKALGD+
Sbjct: 2022 RHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHIISEEYYLISEDECDEAEDVEVPKALGDV 2081

Query: 1334 LESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP--PLRELIELCDSLGYFVKEN 1391
             ES+ GA+ +D+ ++LD VW++++ ++ P +      +P  P+REL+EL      F K  
Sbjct: 2082 FESVAGAIFLDSNMSLDAVWKVYRSMMGPEIEQFSNSVPKSPIRELLELEPETAKFGKPE 2141

Query: 1392 CTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKR 1442
                G  V   + +  K          R  K    K A + LKK+ +  KR
Sbjct: 2142 KLADGRRVRVTVEVFGKGTFRGIGRNYRIAKCTAAKCALRQLKKMGLINKR 2192



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 116/519 (22%), Positives = 213/519 (41%), Gaps = 98/519 (18%)

Query: 574  VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK----YKSAEEAYECELTLPSNAP 629
             +    SV   +++ ++++YC  LPSD +    P+++     ++ +E Y+C + +P N+P
Sbjct: 748  TDENSNSVRLSNAIQMVNKYCAKLPSDTFTKLTPLWRGAKTVRNGQELYQCTIRMPINSP 807

Query: 630  F-QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP--------------SVEEPS 674
              + IVG     + L++++    AC  LH+ G L+D L P                E  S
Sbjct: 808  LKEDIVGLPMPTEILARRMAAYTACRVLHKAGELDDSLQPIGKESFRAFEADWEDFELES 867

Query: 675  ENNLISKKNESLPGAGTTKRKELHGTTPIRALSG-RWGEKCGVILHAYKFNFACSIVTE- 732
             +  I  +N S P  GTTKR++ +      A S  R      V L+       C I  E 
Sbjct: 868  NDAQIVIEN-SEPRPGTTKRRQYYYKRIASAFSECRPTIGSKVYLYHINMTLQCPIPEEQ 926

Query: 733  ------IY------SGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVH-LDADQ 779
                  IY       GF +L  ++L   V  F   ++  S  VK  ++   +   L+ +Q
Sbjct: 927  NTRGRKIYPPEDSPQGFGILT-TKLIPKVSAF--PIFTRSGEVKVALNLCDERPILNQEQ 983

Query: 780  MSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGD 839
            + +      +F N  F K+    K      + +  + +++ +  ++   +  E V T   
Sbjct: 984  LERI----HMFINYTFTKVLRLQK------YLMLYDPDAMENCFFIVPTITRESVVT--- 1030

Query: 840  GSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLAN 899
                ++W+ I+  A  V+  K  +F+                              +  N
Sbjct: 1031 ----VDWNFIDTIAKNVD--KMPTFIPDE---------------------------NRKN 1057

Query: 900  GSVDAKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKY 955
             + D+   KD VV+  +      + + + EI  + S +S F G    +  TF  Y+ +KY
Sbjct: 1058 YTFDSNQFKDAVVMPWYRNQDQPQYFYVAEICYHLSPKSSFPGL---NYSTFEEYYYKKY 1114

Query: 956  GIVLIHPGQPLLRLKQSHNPHNLLV--NFNDGG----GSGKGSKSGMNTKKPQMHVHMPP 1009
             I + +  QPLL +  +    N L     N  G     S + +K        Q  + + P
Sbjct: 1115 SIQIQNCKQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI-LIP 1173

Query: 1010 ELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEI 1048
            EL      P S+ ++   LP ++ R+ +L+LA ++R+E+
Sbjct: 1174 ELCTIHPFPASLWRAAVCLPCILYRINALLLADEIRKEV 1212



 Score = 80.1 bits (196), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 105/209 (50%), Gaps = 11/209 (5%)

Query: 36  SSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDI-AQAIKSNGFKK 94
           + + ++    PR YQ+++   AK RN I  L   + K  IA+ LI ++ +Q  K  G +K
Sbjct: 6   TDNIHTTALTPRDYQVELLASAKERNLILCLAHNSSKEFIALKLIHELGSQLRKPAGKRK 65

Query: 95  LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDE-WDSQCWQKEINKNDVLVMTPQ 153
             I+++    +    +++IR  TD +V      +  DE +D   W++ ++   V++   +
Sbjct: 66  RTIYISQNDSV----FNLIRDLTDLKVINVNDLEDADEDYD---WEQIVDDYQVIITDER 118

Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR 213
             LDA+   +L L+ V  +VID+CH   GN   +K+  ++Y+    KPK+ G+ A P+  
Sbjct: 119 KCLDAIICGYLDLNEVNLLVIDDCHKVYGNEEISKLFIDYYNVCREKPKILGL-AGPLHN 177

Query: 214 KGVSSAMDCEGQISELESTLDSQVFTIED 242
            G         ++ +LE  L ++  T  D
Sbjct: 178 AGCIPGR-LSAELEQLEYCLQAKAETASD 205



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
            S+IL+ALT     +  ++ERLE +GDS LKYA++ +L+ TY   HEG+LS  RS  V N 
Sbjct: 1655 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRSKQVSNL 1714

Query: 1120 TLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1147
             L++LG  + L   +  + F+P   W+ P
Sbjct: 1715 NLYRLGRRKVLGESMIATKFEPHDNWLPP 1743



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 7/113 (6%)

Query: 420 FVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV------DALTPKVQKEVLESFRGG 473
           F+ +I+ +   E  ++  P L ++ V Y    T           +  + Q+EVL+ FR  
Sbjct: 504 FIAKILYSLFYES-IRSDPQLAYINVQYTVDKTADPIKDPKEAEIEHRKQEEVLKRFRMH 562

Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526
           + NLL  T V+EEG+ +P C+ VIR++ P +  SY+Q +GRAR   +  IL +
Sbjct: 563 ECNLLIGTSVLEEGIDLPKCNLVIRWNEPVSYRSYVQCKGRARASTAYHILFV 615


>gi|340624705|ref|YP_004743158.1| Hef nuclease [Methanococcus maripaludis X1]
 gi|339904973|gb|AEK20415.1| Hef nuclease [Methanococcus maripaludis X1]
          Length = 755

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 115/490 (23%), Positives = 210/490 (42%), Gaps = 57/490 (11%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           RIYQ  V   A ++NT+ VL TG GKT IA + I  I    K NG    ++ +AP+  LV
Sbjct: 16  RIYQQLVVASALKQNTLCVLGTGLGKTAIAALTIAGILS--KRNG---KVLIIAPSRPLV 70

Query: 107 HQQYDVIRVHTDFEVEEYY--GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
            Q +  +    + + E+      K   +     W+       + + TPQ+  + +    L
Sbjct: 71  DQHFKSMNQFLNIDSEKIVILNGKISPKKREAMWES----GKIFIATPQVAENDIISKIL 126

Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEG 224
                  ++ DE HH TGNH YT +  +F  KS     V G+TASP       S +D   
Sbjct: 127 KPSQFSLLIADEAHHTTGNHSYTFVANKFKKKSH----VLGLTASP------GSNID--- 173

Query: 225 QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
           +I E+   L  +   I+ + + +V    AK   R              ++E+   +F+ +
Sbjct: 174 RIFEICGNLGIEHVEIKTEEDPDVAPYVAKVKMR------------PKRVELP-EEFEVN 220

Query: 285 LSKLQGSQLNCYKDMDDKH-----KTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE- 338
           L+ L+ +  +  +D+ +          + +L   + KI+   D +     YE ++I  E 
Sbjct: 221 LTLLKNALKDRLRDLKENRVIHSITVNKSELLGLNKKIMAMDDNI----KYEMLRISSEA 276

Query: 339 -KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397
            K+  A E  E   +S+    Y+ + +     SA  + +             +D+ +   
Sbjct: 277 VKLEHAIEMLETQGRSTF-LNYYQKLLTQNTKSAKEITNDPRFIQAVKNLNELDIEH--P 333

Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA 457
           K  ++L++     K  + + I    R    K+V+   +         + ++  S      
Sbjct: 334 KYEKMLEIVKEILKENEKIIIFAQYRDTVQKIVDLLSEN----EIEAIMFVGQSNKDGKG 389

Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-AR 516
           ++ K Q + +E F+  + N+L +T V EEG+ + + +YV+ ++   +    IQ RGR AR
Sbjct: 390 MSQKEQAKAIEKFK-NEANVLVSTSVSEEGIDISSVNYVLFYEPVPSEIRMIQRRGRAAR 448

Query: 517 QHNSQFILML 526
               Q I+++
Sbjct: 449 GEGGQVIVLI 458


>gi|330934775|ref|XP_003304700.1| hypothetical protein PTT_17349 [Pyrenophora teres f. teres 0-1]
 gi|311318582|gb|EFQ87201.1| hypothetical protein PTT_17349 [Pyrenophora teres f. teres 0-1]
          Length = 1322

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 118/519 (22%), Positives = 210/519 (40%), Gaps = 76/519 (14%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK----KLIIFLAPT 102
           R YQ  + +     N +  L TG GKT IA  +I         N F+      I+F+APT
Sbjct: 350 RDYQFNIVQRGLFHNLLVALPTGLGKTFIAATII--------LNWFRWTLDAQIVFVAPT 401

Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEW---------DSQCWQKEINKNDVLVMTPQ 153
             LV QQ           +E  Y   G+             +    +E  +  V  MTPQ
Sbjct: 402 KPLVAQQ-----------IEACYKIAGIPRSCTTMLTGGVQTGLRAEEWKEKRVFFMTPQ 450

Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR 213
            LL+ L+  +     +  +V+DE H ATG + Y +++  F  + +   +V  +TA+P   
Sbjct: 451 TLLNDLKSGYADPKRIVLLVVDEAHRATGAYAYVEVVS-FLRRFNTSFRVVALTATPGAD 509

Query: 214 -KGVSSAMDCEGQISEL----ESTLDSQVFTIEDKTEMEVFVPSAK-ESC-RFYDQSKFC 266
            + V   +D   +IS +    E+++D   +  + K E +VF  + + E C   Y ++   
Sbjct: 510 VESVQKVIDGL-EISRVEIRTENSMDICSYVHQRKIEKQVFQNTDEMEMCMDLYSEALQP 568

Query: 267 GSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYH------AKILYC 320
             +    L   WSK    L+     Q      M+      R   S  +      A I + 
Sbjct: 569 LVNTIAGLNAYWSKNPRDLTPFGCQQAKKKWFMEIGRNANRGLQSTVYTIFAILASISHG 628

Query: 321 LDEL---GLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADK 377
           +D L   G+   Y  +K   ++  K + +   Y++  L    + + ++ + G    +AD 
Sbjct: 629 MDLLKFYGMGPFYVKMKEFQDEATKTKSK---YKKQILDSDAWKKLMVRLEGW---IADD 682

Query: 378 IFLDF-GFDYSKAVDLGYISTKLHELLQLFLSFGKS--------TQVLCIIFVERIIAAK 428
            F+     DY + V           +L  F++ G          +Q   ++F     +A+
Sbjct: 683 NFVGHPKLDYLQQV-----------ILDHFVNAGDGRNVDGAPPSQTRIMVFAHFRDSAE 731

Query: 429 VVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488
            + R +K+   +    +        + + +T K Q E +E F+ G+ N L AT + EEG+
Sbjct: 732 EIARILKRHEPMIRPRIFVGQAHGKNSEGMTQKDQLEAVEKFKIGEFNTLIATSIGEEGL 791

Query: 489 HVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE 527
            +     +I +D   +    +Q  GR  +     I+ML+
Sbjct: 792 DIGEVDLIICYDSKASPIRMLQRMGRTGRKRQGRIVMLQ 830


>gi|169603375|ref|XP_001795109.1| hypothetical protein SNOG_04697 [Phaeosphaeria nodorum SN15]
 gi|160706381|gb|EAT88457.2| hypothetical protein SNOG_04697 [Phaeosphaeria nodorum SN15]
          Length = 1275

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 116/512 (22%), Positives = 204/512 (39%), Gaps = 62/512 (12%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R YQ  + +     N +  L TG GKT IA  ++ +  +  K +     I+F+APT  LV
Sbjct: 306 RDYQFNIVQRGLFNNLLVALPTGLGKTFIAATIMLNWYRWTKDS----QIVFVAPTKPLV 361

Query: 107 HQQYD-------VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
            QQ D       + R  T         A   +EW S+          V  MTPQ LL+ L
Sbjct: 362 AQQIDACFHIAGIPRSQTTMLTGGVSPALRSEEWKSKR---------VFFMTPQTLLNDL 412

Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR----KG 215
           +  +     +  +V+DE H ATG + Y +++  F  + +   +V  +TA+P       + 
Sbjct: 413 KHGYADPKKLVLLVVDEAHRATGAYAYVEVV-SFLRRFNQSFRVLALTATPGANVESVQK 471

Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAK-ESC-RFYDQSKFCGSDLKGK 273
           V   +D        E+++D   +      E  VF  S + E C   Y  +     +    
Sbjct: 472 VIDGLDISRVEIRTENSMDICSYVHSRSIEKHVFQNSDEMEMCMELYSHALQPLVNTVNG 531

Query: 274 LEVSWSKFDASLSKLQGSQL-NCYKDMDDKH-----KTLRKQLSDYHAKILYCLDEL--- 324
           L   WSK    L+     Q  N +     +H     K++   +    A I   +D L   
Sbjct: 532 LNAYWSKNPCDLTPYGCQQARNKWISEAGRHANQGVKSMVNAVFTILASISQAMDLLKYH 591

Query: 325 GLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDF-G 383
           G+   Y  +K   E   ++ +    YR+  L  + F + ++ + G    + D  F+    
Sbjct: 592 GMGPFYVKLK---EFKKESDKSKSKYRKQILDSESFQKLMVRLQGW---VTDDNFVGHPK 645

Query: 384 FDYSKAVDLGYISTKLHELLQLFLSFGKSTQV--------LCIIFVERIIAAKVVERFVK 435
            ++ + V           +L  F++ G    V          ++F     +A+ + R +K
Sbjct: 646 LEFLQQV-----------ILDHFVNAGNGDNVEGAPPSQTRIMVFAHFRDSAEEISRILK 694

Query: 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSY 495
           +   +    V     +  + + ++ K Q E +E F+ G  N L AT + EEG+ +     
Sbjct: 695 RHEPMIRPRVFVGQSTGKNSEGMSQKEQLEAIEQFKQGTFNTLIATSIGEEGLDIGEVDL 754

Query: 496 VIRFDLPKTVSSYIQSRGRARQHNSQFILMLE 527
           +I +D   +    +Q  GR  +     I+ML+
Sbjct: 755 IICYDSKASPIRMLQRMGRTGRKRQGKIVMLQ 786


>gi|169608916|ref|XP_001797877.1| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15]
 gi|160701743|gb|EAT85008.2| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15]
          Length = 1017

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 86/153 (56%), Gaps = 9/153 (5%)

Query: 390 VDLGYISTKLHELLQLFLSFGK-STQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAY 447
           + LG +S KL  L++  ++  K   +  C++FVE R+  A + E           L V  
Sbjct: 124 MSLGSMSHKLQLLIKFLVAEAKHDPEFTCLVFVEQRVWVACIAEVLAIHPETRDLLRVGT 183

Query: 448 LTGST------TSVDALT-PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
             G +       ++ +++ P+ Q+  LE+FR GK+NL+ AT V+EEG+ V +C  V+ F+
Sbjct: 184 FVGESENSKRKANIASISEPRNQQATLENFRAGKLNLILATSVLEEGIDVSSCHLVVCFE 243

Query: 501 LPKTVSSYIQSRGRARQHNSQFILMLERGNLKQ 533
            PK + S++Q RGRAR+  S++++ + +   ++
Sbjct: 244 SPKNLKSFVQRRGRARKEESKYVIFVPQAGRRR 276



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 111/266 (41%), Gaps = 33/266 (12%)

Query: 1015 VDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCES 1074
            V  P SV     LLPS++ R    ++A  LR  +          S L+  AL +     +
Sbjct: 504  VPAPYSVFA--LLLPSILHRFGMAIIAETLRTTLLGPVALDSAHSLLLTRALKSSAADGN 561

Query: 1075 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134
             + +RLE LGD +LK+  + HL    PK  E  L+A++   V N  L +      L  ++
Sbjct: 562  DNYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSNGFLARATIAAGLDRFM 621

Query: 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGS 1194
               +F   +W AP                         +  D     G P     R   S
Sbjct: 622  ITKSFTGAKW-APR------------------------YAGDLLAETG-PAVKEER--SS 653

Query: 1195 KTIADCAEALIGA-YYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1253
            K IAD  E+LIGA Y VGG   A L +   L ++  + V   +  +  A+       +  
Sbjct: 654  KLIADIIESLIGACYTVGGFEKAVLCVQTLLPLEPWISVPAANSILHEAA--PAEADLMG 711

Query: 1254 IKDIESKIGYEFTVKFLLQEAITHAS 1279
            +  +E+ IGY F  K LL EA+THAS
Sbjct: 712  LDVLETLIGYTFKKKPLLLEALTHAS 737


>gi|448342391|ref|ZP_21531342.1| Hef nuclease [Natrinema gari JCM 14663]
 gi|445625768|gb|ELY79122.1| Hef nuclease [Natrinema gari JCM 14663]
          Length = 819

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 14/167 (8%)

Query: 47  RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
           R+YQLK+   A   +T+  L TG GKT +++++    A+ ++  G K L+  LAPT  LV
Sbjct: 24  RLYQLKLAGTAANHHTLVCLPTGLGKTTVSLLVT---ARRLEEVGGKSLM--LAPTKPLV 78

Query: 107 HQQYDVIRVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
            Q  D  R     +D E+  + G    D+  +  W+       V++ TPQ++ + L  + 
Sbjct: 79  QQHADFYREALQLSDEEIVVFTGDVSPDDR-AATWESAT----VVMATPQVIENDLVGSR 133

Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
           +SL  V     DECH ATG++ Y  I  E YH    +P V GM+ASP
Sbjct: 134 ISLADVTHATFDECHRATGDYAYNYIA-ERYHADAKRPLVTGMSASP 179



 Score = 51.2 bits (121), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
            I+F E    A+ +  F+ +  F T   V    G     D +T   Q+ VL+ FR G+  
Sbjct: 375 VIVFTESRDTAEALTDFLSE-SFDTKRFVGQ--GDRDGSDGMTQTQQQAVLDEFRAGEFE 431

Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQFILML 526
           +L +T V EEG+ VP    V+ ++   T    IQ +GR  RQ   + ++++
Sbjct: 432 VLVSTSVAEEGLDVPEVDLVLFYEPVPTAIRSIQRKGRTGRQTEGRVVVLM 482


>gi|296190081|ref|XP_002743043.1| PREDICTED: probable ATP-dependent RNA helicase DDX58 [Callithrix
           jacchus]
          Length = 925

 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 16/233 (6%)

Query: 21  PDMGSSGHDHAVDGPSSSTNSIN-FIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVM 78
           P+  +   +  +    S TN  + F PR YQL++   AK+ +NTI    TG GKT++A++
Sbjct: 217 PECQNLSENSCLPSEVSDTNLYSPFKPRSYQLELALPAKKGKNTIICAPTGCGKTLVALL 276

Query: 79  LIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138
           + +   +     G K  ++F A  + +  QQ  V   + +       G  G    +    
Sbjct: 277 ICEHHLKKF-PQGQKGKVVFFANQIPVYEQQKSVFSKYFERLGYRVTGISGATAENVPVK 335

Query: 139 QKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK- 196
           Q  +  ND++++TPQIL++ L+   + SL I   ++ DECH+ +  HPY  IM  +  + 
Sbjct: 336 QI-VENNDIIILTPQILVNNLKNGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQK 394

Query: 197 ----SDNKPKVFGMTASPVV--RKGVSSAMDCEGQISELESTLDSQVF-TIED 242
               S   P+V G+TAS  V   K    A+D    I +L ++LD+ V  T++D
Sbjct: 395 LGGSSGPLPQVIGLTASVGVGDAKNTDEALD---YICKLCASLDASVIATVQD 444



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 3/115 (2%)

Query: 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVLESFR 471
           + + I+FV+       ++ +++    L+ L    LTG   T     +T   QK +L+SF+
Sbjct: 627 ETITILFVKTRALVDALKNWIEGNSKLSFLKPGILTGRSKTNQNTGMTLPAQKCILDSFK 686

Query: 472 G-GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
             G  N+L AT V +EG+ +  C+ VI ++    V   IQ+RGR R   S+  L+
Sbjct: 687 AHGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.319    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,984,500,214
Number of Sequences: 23463169
Number of extensions: 1074443719
Number of successful extensions: 2550974
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 16479
Number of HSP's successfully gapped in prelim test: 3897
Number of HSP's that attempted gapping in prelim test: 2502715
Number of HSP's gapped (non-prelim): 46063
length of query: 1604
length of database: 8,064,228,071
effective HSP length: 157
effective length of query: 1447
effective length of database: 8,675,477,834
effective search space: 12553416425798
effective search space used: 12553416425798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 84 (37.0 bits)