Query 000379
Match_columns 1604
No_of_seqs 617 out of 4192
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:29:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0701 dsRNA-specific nucleas 100.0 1.4E-62 3.1E-67 635.8 11.7 1301 113-1597 7-1603(1606)
2 COG1111 MPH1 ERCC4-like helica 100.0 8.5E-53 1.9E-57 479.9 45.7 476 35-549 5-500 (542)
3 KOG0354 DEAD-box like helicase 100.0 1.1E-48 2.4E-53 473.6 41.1 449 29-527 46-527 (746)
4 KOG0331 ATP-dependent RNA heli 100.0 1.4E-40 3.1E-45 393.0 26.9 345 41-544 109-463 (519)
5 KOG0330 ATP-dependent RNA heli 100.0 1.8E-39 4E-44 356.3 25.3 334 43-544 81-422 (476)
6 PRK13766 Hef nuclease; Provisi 100.0 1.8E-37 4E-42 412.6 49.4 458 39-534 9-484 (773)
7 PTZ00110 helicase; Provisional 100.0 7.6E-38 1.6E-42 394.0 36.1 341 43-543 150-498 (545)
8 PLN00206 DEAD-box ATP-dependen 100.0 3.4E-37 7.4E-42 387.5 36.4 339 43-543 141-489 (518)
9 PRK04837 ATP-dependent RNA hel 100.0 3.8E-37 8.2E-42 380.8 33.5 334 43-541 28-374 (423)
10 PRK10590 ATP-dependent RNA hel 100.0 5.3E-37 1.1E-41 381.6 34.6 335 43-541 21-364 (456)
11 PRK11776 ATP-dependent RNA hel 100.0 7.1E-37 1.5E-41 382.6 35.7 329 43-539 24-359 (460)
12 PRK11192 ATP-dependent RNA hel 100.0 6.6E-37 1.4E-41 380.7 34.2 335 43-539 21-362 (434)
13 PRK11634 ATP-dependent RNA hel 100.0 2.3E-36 4.9E-41 383.0 33.9 330 43-539 26-362 (629)
14 PRK01297 ATP-dependent RNA hel 100.0 9.3E-36 2E-40 373.3 37.1 335 43-541 107-454 (475)
15 PRK04537 ATP-dependent RNA hel 100.0 7.9E-36 1.7E-40 376.7 33.6 331 42-537 28-372 (572)
16 KOG0338 ATP-dependent RNA heli 100.0 5.2E-36 1.1E-40 337.9 26.2 337 42-543 200-544 (691)
17 PTZ00424 helicase 45; Provisio 100.0 1.4E-35 3.1E-40 366.5 31.6 332 43-540 48-385 (401)
18 KOG0340 ATP-dependent RNA heli 100.0 9.4E-36 2E-40 323.4 25.3 341 41-543 25-375 (442)
19 COG0513 SrmB Superfamily II DN 100.0 4.1E-35 8.9E-40 365.5 33.3 339 41-542 47-394 (513)
20 KOG0328 Predicted ATP-dependen 100.0 2.6E-35 5.6E-40 309.5 24.4 332 44-541 48-385 (400)
21 KOG0701 dsRNA-specific nucleas 100.0 7.8E-38 1.7E-42 406.5 6.7 1185 56-1440 255-1600(1606)
22 COG0571 Rnc dsRNA-specific rib 100.0 5.6E-36 1.2E-40 325.6 18.8 93 1041-1137 8-104 (235)
23 KOG1817 Ribonuclease [RNA proc 100.0 2.7E-35 5.9E-40 325.1 21.8 385 1002-1438 4-503 (533)
24 PRK14718 ribonuclease III; Pro 100.0 2.5E-35 5.5E-40 335.8 20.2 212 1042-1438 4-222 (467)
25 PRK12371 ribonuclease III; Rev 100.0 4.1E-35 8.9E-40 324.8 20.4 212 1042-1438 13-231 (235)
26 TIGR00603 rad25 DNA repair hel 100.0 2.5E-33 5.3E-38 349.3 35.3 332 42-532 252-610 (732)
27 PRK12372 ribonuclease III; Rev 100.0 9.2E-35 2E-39 331.1 20.5 212 1042-1438 4-222 (413)
28 KOG0326 ATP-dependent RNA heli 100.0 3.3E-35 7.1E-40 313.5 14.4 331 44-542 106-442 (459)
29 KOG0333 U5 snRNP-like RNA heli 100.0 6.8E-34 1.5E-38 322.5 24.8 360 41-542 263-637 (673)
30 TIGR00614 recQ_fam ATP-depende 100.0 5.8E-33 1.3E-37 346.4 33.5 318 44-532 10-336 (470)
31 KOG0345 ATP-dependent RNA heli 100.0 3.5E-33 7.6E-38 313.8 27.2 326 45-529 28-364 (567)
32 KOG0335 ATP-dependent RNA heli 100.0 2E-33 4.3E-38 326.2 23.4 344 41-543 92-458 (482)
33 KOG0343 RNA Helicase [RNA proc 100.0 6.1E-33 1.3E-37 315.8 26.3 328 40-530 86-423 (758)
34 PLN03137 ATP-dependent DNA hel 100.0 9.1E-33 2E-37 350.2 30.3 313 43-529 458-787 (1195)
35 TIGR03817 DECH_helic helicase/ 100.0 2.5E-32 5.4E-37 353.1 33.9 333 43-527 34-384 (742)
36 PRK11057 ATP-dependent DNA hel 100.0 4.7E-32 1E-36 346.5 31.8 314 45-531 25-345 (607)
37 PRK13767 ATP-dependent helicas 100.0 2.2E-31 4.7E-36 351.5 34.4 328 44-519 31-385 (876)
38 TIGR01389 recQ ATP-dependent D 100.0 1.4E-31 3E-36 344.0 31.8 313 45-531 13-333 (591)
39 PHA02558 uvsW UvsW helicase; P 100.0 4.3E-31 9.4E-36 330.9 34.6 324 43-520 112-441 (501)
40 PRK04914 ATP-dependent helicas 100.0 1.6E-31 3.5E-36 345.0 29.8 445 41-543 148-617 (956)
41 KOG0342 ATP-dependent RNA heli 100.0 1.4E-31 3E-36 303.7 25.3 334 44-538 103-446 (543)
42 PRK02362 ski2-like helicase; P 100.0 1.4E-30 3.1E-35 341.7 35.4 324 43-528 21-396 (737)
43 KOG0336 ATP-dependent RNA heli 100.0 1.7E-31 3.8E-36 293.2 21.5 340 42-543 239-586 (629)
44 TIGR00580 mfd transcription-re 100.0 2.3E-30 4.9E-35 336.6 32.3 318 42-540 448-784 (926)
45 KOG0347 RNA helicase [RNA proc 100.0 3.4E-31 7.3E-36 301.8 20.9 362 42-544 200-585 (731)
46 KOG0348 ATP-dependent RNA heli 100.0 1.8E-30 4E-35 295.0 26.6 362 43-538 157-563 (708)
47 KOG4284 DEAD box protein [Tran 100.0 2.4E-31 5.3E-36 306.7 19.4 330 42-530 44-380 (980)
48 PRK10917 ATP-dependent DNA hel 100.0 4.9E-30 1.1E-34 331.1 33.9 321 40-538 256-599 (681)
49 KOG0332 ATP-dependent RNA heli 100.0 2.8E-31 6E-36 290.1 18.6 329 45-541 112-456 (477)
50 KOG0339 ATP-dependent RNA heli 100.0 3E-30 6.5E-35 290.8 26.9 334 44-540 244-586 (731)
51 COG1061 SSL2 DNA or RNA helica 100.0 1.6E-29 3.4E-34 310.1 34.2 336 40-517 31-375 (442)
52 TIGR00643 recG ATP-dependent D 100.0 1.6E-29 3.5E-34 324.6 33.2 311 41-526 231-563 (630)
53 PRK00102 rnc ribonuclease III; 100.0 1E-30 2.2E-35 295.2 19.5 212 1042-1438 6-228 (229)
54 KOG0350 DEAD-box ATP-dependent 100.0 4.3E-30 9.3E-35 290.6 22.8 353 43-530 157-541 (620)
55 KOG0346 RNA helicase [RNA proc 100.0 7.6E-30 1.6E-34 284.1 23.9 340 43-544 39-425 (569)
56 KOG0341 DEAD-box protein abstr 100.0 3.3E-31 7.1E-36 289.0 12.3 321 41-529 188-528 (610)
57 PRK00254 ski2-like helicase; P 100.0 5E-29 1.1E-33 326.4 33.5 323 43-529 21-388 (720)
58 PRK01172 ski2-like helicase; P 100.0 6.2E-29 1.3E-33 324.4 34.0 319 42-528 19-377 (674)
59 PRK10689 transcription-repair 100.0 2.1E-28 4.5E-33 325.2 34.9 299 41-521 596-909 (1147)
60 PLN03142 Probable chromatin-re 100.0 5.8E-28 1.3E-32 312.7 37.2 406 44-533 168-603 (1033)
61 TIGR02191 RNaseIII ribonucleas 100.0 1.6E-29 3.5E-34 284.0 18.4 208 1044-1436 1-220 (220)
62 PRK09751 putative ATP-dependen 100.0 9.6E-28 2.1E-32 318.8 33.5 314 64-519 1-372 (1490)
63 KOG0344 ATP-dependent RNA heli 100.0 3.5E-28 7.5E-33 283.3 24.3 342 42-543 155-509 (593)
64 COG1201 Lhr Lhr-like helicases 100.0 1.4E-27 3E-32 298.9 29.6 323 43-528 20-361 (814)
65 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.4E-27 3E-32 300.7 29.5 303 43-521 13-380 (844)
66 COG0514 RecQ Superfamily II DN 100.0 4.7E-27 1E-31 284.0 28.0 316 45-535 17-343 (590)
67 KOG0334 RNA helicase [RNA proc 100.0 4.5E-28 9.7E-33 299.8 17.8 332 44-540 386-731 (997)
68 COG1204 Superfamily II helicas 100.0 6E-27 1.3E-31 298.6 27.4 321 45-519 31-394 (766)
69 KOG0385 Chromatin remodeling c 100.0 2.7E-26 5.9E-31 271.3 30.5 415 37-532 159-602 (971)
70 KOG0327 Translation initiation 100.0 2.6E-27 5.6E-32 263.1 20.7 328 44-539 47-380 (397)
71 PRK11448 hsdR type I restricti 99.9 3.6E-26 7.8E-31 302.7 30.8 361 43-527 411-813 (1123)
72 TIGR01587 cas3_core CRISPR-ass 99.9 2.6E-26 5.6E-31 279.2 26.1 296 61-520 1-321 (358)
73 KOG0387 Transcription-coupled 99.9 1.9E-25 4.1E-30 266.0 29.8 429 45-536 205-665 (923)
74 TIGR03158 cas3_cyano CRISPR-as 99.9 3.3E-25 7.1E-30 265.8 31.2 315 49-516 1-357 (357)
75 TIGR01970 DEAH_box_HrpB ATP-de 99.9 1.7E-25 3.6E-30 288.6 29.6 307 49-528 6-335 (819)
76 KOG0337 ATP-dependent RNA heli 99.9 9.2E-27 2E-31 258.7 14.2 325 42-532 40-371 (529)
77 COG1202 Superfamily II helicas 99.9 9.4E-26 2E-30 258.5 22.5 326 42-531 213-555 (830)
78 PHA02653 RNA helicase NPH-II; 99.9 3.6E-25 7.8E-30 278.8 29.9 317 47-529 166-514 (675)
79 PRK09401 reverse gyrase; Revie 99.9 7.4E-25 1.6E-29 292.1 29.7 299 42-517 77-430 (1176)
80 PRK11664 ATP-dependent RNA hel 99.9 6.1E-25 1.3E-29 284.4 27.1 305 48-528 8-338 (812)
81 COG1200 RecG RecG-like helicas 99.9 3.1E-24 6.8E-29 257.6 28.4 308 40-526 257-587 (677)
82 KOG0389 SNF2 family DNA-depend 99.9 6.6E-24 1.4E-28 252.5 29.4 458 35-533 389-892 (941)
83 KOG0329 ATP-dependent RNA heli 99.9 1.6E-24 3.4E-29 225.1 15.9 160 44-210 63-227 (387)
84 PRK14701 reverse gyrase; Provi 99.9 1E-23 2.2E-28 286.3 28.4 132 42-182 76-214 (1638)
85 KOG0392 SNF2 family DNA-depend 99.9 3.5E-23 7.7E-28 255.0 28.2 445 40-533 970-1458(1549)
86 PRK05580 primosome assembly pr 99.9 3.8E-23 8.2E-28 265.9 29.8 156 41-211 140-305 (679)
87 PF03368 Dicer_dimer: Dicer di 99.9 6.8E-25 1.5E-29 204.7 9.0 86 586-671 1-86 (90)
88 TIGR03714 secA2 accessory Sec 99.9 6.5E-23 1.4E-27 256.2 28.9 119 396-528 407-536 (762)
89 KOG0952 DNA/RNA helicase MER3/ 99.9 1.9E-23 4E-28 255.5 23.3 380 7-534 68-496 (1230)
90 PRK09200 preprotein translocas 99.9 2.2E-22 4.9E-27 254.2 33.4 121 396-529 411-541 (790)
91 KOG0384 Chromodomain-helicase 99.9 7.9E-23 1.7E-27 253.8 27.7 420 36-540 361-821 (1373)
92 COG1205 Distinct helicase fami 99.9 1.1E-22 2.3E-27 263.7 27.8 329 42-525 67-416 (851)
93 TIGR00595 priA primosomal prot 99.9 1.9E-22 4.1E-27 250.4 26.7 134 63-211 1-140 (505)
94 PRK12898 secA preprotein trans 99.9 2.7E-22 5.9E-27 248.1 27.6 121 396-529 456-586 (656)
95 KOG0390 DNA repair protein, SN 99.9 3.4E-21 7.5E-26 238.1 35.8 410 42-534 235-712 (776)
96 TIGR00963 secA preprotein tran 99.9 1.8E-22 3.8E-27 250.5 23.7 121 396-529 388-517 (745)
97 TIGR01054 rgy reverse gyrase. 99.9 5.5E-22 1.2E-26 265.3 28.5 131 42-182 75-213 (1171)
98 COG1197 Mfd Transcription-repa 99.9 3.2E-21 7E-26 244.2 29.5 307 40-526 589-909 (1139)
99 PRK09694 helicase Cas3; Provis 99.9 6.1E-21 1.3E-25 246.0 31.4 338 43-520 284-664 (878)
100 PRK11131 ATP-dependent RNA hel 99.9 3.8E-21 8.2E-26 251.7 28.0 314 43-529 72-411 (1294)
101 COG4096 HsdR Type I site-speci 99.9 4.8E-21 1E-25 232.4 24.6 344 42-519 162-526 (875)
102 TIGR01967 DEAH_box_HrpA ATP-de 99.9 1.2E-20 2.6E-25 248.2 27.3 316 44-529 66-404 (1283)
103 KOG0352 ATP-dependent DNA heli 99.9 6.3E-21 1.4E-25 211.8 20.7 110 414-533 255-366 (641)
104 KOG0351 ATP-dependent DNA heli 99.9 2E-21 4.3E-26 249.0 19.3 315 45-529 264-592 (941)
105 TIGR00348 hsdR type I site-spe 99.9 1.3E-19 2.7E-24 233.4 35.1 154 43-213 236-405 (667)
106 PF14622 Ribonucleas_3_3: Ribo 99.9 2.8E-22 6E-27 202.8 7.2 121 1059-1225 2-124 (128)
107 KOG0948 Nuclear exosomal RNA h 99.9 1E-20 2.2E-25 223.2 18.2 371 40-527 124-537 (1041)
108 COG4581 Superfamily II RNA hel 99.8 2.1E-20 4.4E-25 237.4 20.9 154 41-212 115-272 (1041)
109 smart00535 RIBOc Ribonuclease 99.8 3.1E-21 6.7E-26 197.5 10.9 119 1061-1224 2-121 (129)
110 COG4098 comFA Superfamily II D 99.8 6.5E-19 1.4E-23 192.1 29.0 316 43-539 95-425 (441)
111 PRK12371 ribonuclease III; Rev 99.8 2.4E-21 5.3E-26 215.1 10.3 207 1249-1595 7-231 (235)
112 PRK14718 ribonuclease III; Pro 99.8 2E-21 4.2E-26 222.7 9.7 203 1254-1594 3-221 (467)
113 cd00593 RIBOc RIBOc. Ribonucle 99.8 3.3E-21 7.1E-26 198.8 10.6 119 1061-1224 2-123 (133)
114 KOG3732 Staufen and related do 99.8 1.8E-20 4E-25 206.0 16.0 170 1371-1594 38-210 (339)
115 KOG0947 Cytoplasmic exosomal R 99.8 8E-20 1.7E-24 221.1 21.2 153 41-212 293-446 (1248)
116 PRK12372 ribonuclease III; Rev 99.8 4.3E-21 9.4E-26 219.8 8.9 72 1508-1595 151-222 (413)
117 KOG0951 RNA helicase BRR2, DEA 99.8 1.8E-19 3.9E-24 222.9 20.9 160 44-211 308-485 (1674)
118 PF00636 Ribonuclease_3: Ribon 99.8 3.1E-21 6.6E-26 192.7 4.1 114 1078-1213 1-114 (114)
119 KOG1002 Nucleotide excision re 99.8 2.5E-17 5.5E-22 186.1 35.0 470 39-547 178-765 (791)
120 KOG0386 Chromatin remodeling c 99.8 3E-19 6.4E-24 218.2 19.5 436 27-521 376-826 (1157)
121 KOG0353 ATP-dependent DNA heli 99.8 1.1E-18 2.4E-23 190.5 18.4 294 45-510 94-403 (695)
122 KOG1000 Chromatin remodeling p 99.8 1.1E-17 2.4E-22 189.8 26.6 396 45-533 198-607 (689)
123 KOG1123 RNA polymerase II tran 99.8 4.2E-19 9.1E-24 200.8 15.1 327 43-529 300-653 (776)
124 KOG0388 SNF2 family DNA-depend 99.8 7.1E-18 1.5E-22 197.3 25.4 451 42-533 564-1158(1185)
125 cd00268 DEADc DEAD-box helicas 99.8 3.8E-18 8.3E-23 190.1 17.4 160 45-211 21-185 (203)
126 KOG1817 Ribonuclease [RNA proc 99.8 6.7E-19 1.4E-23 196.0 9.9 123 1059-1227 289-415 (533)
127 PF00270 DEAD: DEAD/DEAH box h 99.8 5.9E-18 1.3E-22 182.7 16.8 157 47-211 1-163 (169)
128 PRK13104 secA preprotein trans 99.8 5.5E-17 1.2E-21 204.4 26.2 112 396-520 427-576 (896)
129 PRK12906 secA preprotein trans 99.8 5.8E-17 1.3E-21 203.6 24.9 121 396-529 423-553 (796)
130 TIGR00631 uvrb excinuclease AB 99.8 7.5E-16 1.6E-20 195.8 34.9 134 395-539 424-563 (655)
131 KOG0391 SNF2 family DNA-depend 99.7 5.2E-16 1.1E-20 189.8 30.3 186 44-253 614-808 (1958)
132 COG4889 Predicted helicase [Ge 99.7 8.4E-18 1.8E-22 200.6 14.7 167 38-212 154-352 (1518)
133 KOG0349 Putative DEAD-box RNA 99.7 2E-17 4.3E-22 184.0 16.6 310 92-527 285-613 (725)
134 PRK12904 preprotein translocas 99.7 2.2E-16 4.8E-21 199.2 26.9 112 396-520 413-562 (830)
135 KOG0950 DNA polymerase theta/e 99.7 1.2E-16 2.6E-21 196.3 23.0 344 44-532 222-614 (1008)
136 KOG4439 RNA polymerase II tran 99.7 4.9E-16 1.1E-20 183.5 25.5 448 36-533 316-862 (901)
137 cd02844 PAZ_CAF_like PAZ domai 99.7 1E-17 2.2E-22 167.7 9.8 121 891-1018 15-135 (135)
138 KOG0949 Predicted helicase, DE 99.7 3.4E-16 7.4E-21 190.2 24.0 177 43-241 509-696 (1330)
139 PRK00102 rnc ribonuclease III; 99.7 3.5E-17 7.6E-22 185.0 13.1 72 1507-1595 157-228 (229)
140 PF04851 ResIII: Type III rest 99.7 8.7E-17 1.9E-21 176.2 15.7 153 44-211 2-183 (184)
141 COG1203 CRISPR-associated heli 99.7 5.1E-16 1.1E-20 202.3 24.4 318 42-519 192-536 (733)
142 COG1643 HrpA HrpA-like helicas 99.7 1.5E-15 3.1E-20 193.2 25.3 314 44-528 49-386 (845)
143 TIGR02191 RNaseIII ribonucleas 99.7 6.7E-17 1.5E-21 181.8 10.0 70 1507-1593 151-220 (220)
144 COG1198 PriA Primosomal protei 99.7 5.2E-15 1.1E-19 185.5 26.0 154 43-211 196-360 (730)
145 PRK05298 excinuclease ABC subu 99.7 4.5E-14 9.8E-19 181.5 34.0 123 396-529 429-557 (652)
146 COG0553 HepA Superfamily II DN 99.7 2.5E-14 5.5E-19 196.0 33.9 446 41-532 334-825 (866)
147 cd02843 PAZ_dicer_like PAZ dom 99.7 1.1E-16 2.4E-21 152.5 7.1 80 901-983 35-118 (122)
148 COG0556 UvrB Helicase subunit 99.7 3.2E-14 6.8E-19 164.5 27.8 105 413-527 445-554 (663)
149 PRK13107 preprotein translocas 99.6 5.3E-15 1.1E-19 185.9 21.4 112 396-520 432-580 (908)
150 KOG0920 ATP-dependent RNA heli 99.6 3.3E-14 7.1E-19 179.7 26.1 339 46-528 174-543 (924)
151 smart00487 DEXDc DEAD-like hel 99.6 8.2E-15 1.8E-19 162.4 17.1 161 43-212 6-172 (201)
152 PRK12899 secA preprotein trans 99.6 2.9E-13 6.3E-18 170.5 31.4 125 46-182 93-229 (970)
153 KOG1015 Transcription regulato 99.6 2.5E-14 5.5E-19 172.5 18.3 133 394-533 1123-1281(1567)
154 KOG0922 DEAH-box RNA helicase 99.6 1.9E-13 4.1E-18 163.6 24.2 309 47-528 53-389 (674)
155 cd00046 DEXDc DEAD-like helica 99.5 1.3E-13 2.9E-18 143.4 15.7 142 60-210 1-144 (144)
156 TIGR01407 dinG_rel DnaQ family 99.5 9.4E-13 2E-17 175.8 27.4 134 42-181 242-453 (850)
157 PRK12900 secA preprotein trans 99.5 7.9E-13 1.7E-17 167.0 24.1 121 396-529 581-711 (1025)
158 TIGR00596 rad1 DNA repair prot 99.5 6.1E-12 1.3E-16 161.8 31.1 102 144-252 7-110 (814)
159 PF00271 Helicase_C: Helicase 99.5 4.3E-14 9.4E-19 130.7 8.1 73 441-519 6-78 (78)
160 KOG0924 mRNA splicing factor A 99.5 2.7E-12 5.8E-17 151.2 21.9 308 49-527 360-695 (1042)
161 cd00079 HELICc Helicase superf 99.5 5.8E-13 1.3E-17 136.9 13.1 114 397-521 12-125 (131)
162 COG1110 Reverse gyrase [DNA re 99.4 6.7E-12 1.5E-16 155.6 24.3 133 41-183 78-218 (1187)
163 PF14709 DND1_DSRM: double str 99.4 2.6E-13 5.6E-18 123.4 7.8 73 1509-1593 2-79 (80)
164 KOG0923 mRNA splicing factor A 99.4 7.7E-12 1.7E-16 147.5 21.3 313 45-527 265-604 (902)
165 KOG0926 DEAH-box RNA helicase 99.4 4.2E-12 9.1E-17 152.1 18.7 130 458-596 614-765 (1172)
166 PF00176 SNF2_N: SNF2 family N 99.4 2.6E-12 5.7E-17 152.6 12.4 156 49-214 1-176 (299)
167 PRK08074 bifunctional ATP-depe 99.3 1.2E-09 2.6E-14 146.6 34.7 135 42-181 254-468 (928)
168 PHA02701 ORF020 dsRNA-binding 99.3 1.5E-11 3.3E-16 125.7 12.0 92 1487-1596 86-178 (183)
169 COG0571 Rnc dsRNA-specific rib 99.3 1.6E-11 3.5E-16 134.7 12.7 112 1324-1438 113-231 (235)
170 PRK07246 bifunctional ATP-depe 99.3 7.1E-10 1.5E-14 146.0 29.1 132 42-181 242-449 (820)
171 smart00490 HELICc helicase sup 99.3 1.4E-11 3E-16 115.1 8.9 80 430-519 3-82 (82)
172 cd02845 PAZ_piwi_like PAZ doma 99.3 1.2E-11 2.6E-16 121.7 8.2 92 905-1018 26-117 (117)
173 cd00048 DSRM Double-stranded R 99.2 1.7E-11 3.6E-16 110.0 7.2 68 1509-1593 1-68 (68)
174 PRK12326 preprotein translocas 99.2 2E-09 4.3E-14 133.2 26.3 127 42-181 75-211 (764)
175 PRK13103 secA preprotein trans 99.2 7.9E-10 1.7E-14 140.1 22.3 126 43-181 80-215 (913)
176 KOG1001 Helicase-like transcri 99.2 2.9E-10 6.2E-15 143.5 17.0 121 395-525 520-642 (674)
177 smart00358 DSRM Double-strande 99.2 5.3E-11 1.2E-15 106.4 7.3 66 1510-1593 1-66 (67)
178 PHA03103 double-strand RNA-bin 99.2 6E-11 1.3E-15 122.7 7.7 78 1500-1596 101-178 (183)
179 TIGR02562 cas3_yersinia CRISPR 99.1 6.4E-09 1.4E-13 132.8 26.4 161 45-211 408-635 (1110)
180 KOG3732 Staufen and related do 99.1 9.2E-11 2E-15 130.2 7.1 73 1508-1599 38-110 (339)
181 PRK11747 dinG ATP-dependent DN 99.1 1.9E-07 4.1E-12 121.7 36.7 63 43-110 23-95 (697)
182 KOG4150 Predicted ATP-dependen 99.1 8.9E-10 1.9E-14 127.5 12.8 103 413-521 524-630 (1034)
183 PF07652 Flavi_DEAD: Flaviviru 99.1 7.6E-10 1.6E-14 110.1 10.2 132 60-213 5-139 (148)
184 KOG3769 Ribonuclease III domai 99.0 2.4E-09 5.2E-14 115.8 14.4 204 1057-1439 77-304 (333)
185 PRK12903 secA preprotein trans 99.0 3.1E-08 6.8E-13 124.4 25.7 111 396-520 409-528 (925)
186 PRK14873 primosome assembly pr 99.0 1.7E-08 3.8E-13 128.7 23.0 135 62-211 163-304 (665)
187 PF02170 PAZ: PAZ domain; Int 99.0 1.9E-10 4.1E-15 118.3 3.7 106 904-1037 26-133 (135)
188 PF00035 dsrm: Double-stranded 99.0 5.5E-10 1.2E-14 99.8 6.1 67 1510-1593 1-67 (67)
189 KOG1016 Predicted DNA helicase 99.0 6.3E-08 1.4E-12 116.0 23.5 103 413-521 718-837 (1387)
190 COG1199 DinG Rad3-related DNA 98.9 4.9E-07 1.1E-11 119.1 31.9 70 41-115 11-85 (654)
191 KOG0953 Mitochondrial RNA heli 98.9 4.9E-08 1.1E-12 114.4 18.9 113 415-542 359-486 (700)
192 COG0610 Type I site-specific r 98.9 1E-07 2.2E-12 127.2 23.9 141 60-215 274-418 (962)
193 TIGR03117 cas_csf4 CRISPR-asso 98.9 8.7E-09 1.9E-13 129.5 12.9 128 50-181 2-219 (636)
194 CHL00122 secA preprotein trans 98.8 3.8E-07 8.2E-12 115.8 24.9 126 43-181 74-209 (870)
195 KOG0951 RNA helicase BRR2, DEA 98.8 1.6E-07 3.4E-12 119.0 21.1 145 47-211 1145-1300(1674)
196 KOG0925 mRNA splicing factor A 98.8 9.2E-08 2E-12 110.0 17.3 152 47-211 49-202 (699)
197 smart00488 DEXDc2 DEAD-like he 98.8 3.5E-08 7.6E-13 114.9 14.2 76 41-116 4-84 (289)
198 smart00489 DEXDc3 DEAD-like he 98.8 3.5E-08 7.6E-13 114.9 14.2 76 41-116 4-84 (289)
199 PF14622 Ribonucleas_3_3: Ribo 98.8 9.3E-10 2E-14 111.6 0.5 93 1267-1362 1-126 (128)
200 PRK12902 secA preprotein trans 98.7 1E-06 2.2E-11 111.7 23.1 126 43-181 83-218 (939)
201 PHA03103 double-strand RNA-bin 98.7 6.9E-08 1.5E-12 100.3 10.4 68 1370-1438 108-177 (183)
202 smart00535 RIBOc Ribonuclease 98.7 1.6E-08 3.5E-13 103.5 5.7 94 1269-1364 1-126 (129)
203 PHA02701 ORF020 dsRNA-binding 98.7 6.5E-08 1.4E-12 99.5 9.7 67 1371-1438 108-177 (183)
204 PF00035 dsrm: Double-stranded 98.7 1.8E-07 3.9E-12 83.5 10.3 63 1373-1436 1-67 (67)
205 cd00593 RIBOc RIBOc. Ribonucle 98.6 2.6E-08 5.6E-13 102.7 5.4 96 1269-1366 1-130 (133)
206 KOG1042 Germ-line stem cell di 98.6 6.6E-08 1.4E-12 114.4 7.5 100 906-1028 283-382 (845)
207 smart00358 DSRM Double-strande 98.6 1.7E-07 3.7E-12 83.6 8.5 63 1373-1436 1-66 (67)
208 cd00048 DSRM Double-stranded R 98.6 2.6E-07 5.5E-12 82.7 8.9 64 1372-1436 1-68 (68)
209 PRK12901 secA preprotein trans 98.4 1.3E-05 2.8E-10 102.8 21.3 111 396-520 611-730 (1112)
210 PF02399 Herpes_ori_bp: Origin 98.4 2.2E-05 4.9E-10 98.8 22.9 133 62-211 52-191 (824)
211 PRK15483 type III restriction- 98.3 3.3E-06 7.1E-11 109.3 13.2 141 61-212 61-240 (986)
212 cd02825 PAZ PAZ domain, named 98.3 1.2E-06 2.5E-11 87.1 7.0 65 906-972 32-98 (115)
213 PF07517 SecA_DEAD: SecA DEAD- 98.2 1.1E-05 2.4E-10 91.3 13.0 127 42-181 74-210 (266)
214 PF13086 AAA_11: AAA domain; P 98.0 2.4E-05 5.2E-10 89.2 11.0 70 46-115 2-75 (236)
215 TIGR00604 rad3 DNA repair heli 98.0 3.7E-05 8E-10 101.5 12.5 71 42-115 6-82 (705)
216 KOG0383 Predicted helicase [Ge 98.0 5.8E-06 1.3E-10 103.5 4.5 160 44-214 294-478 (696)
217 KOG2777 tRNA-specific adenosin 97.9 2E-05 4.3E-10 95.0 7.8 136 1393-1595 16-154 (542)
218 PF13872 AAA_34: P-loop contai 97.8 0.00015 3.3E-09 82.1 13.0 156 43-212 35-222 (303)
219 KOG0298 DEAD box-containing he 97.8 2.1E-05 4.7E-10 101.2 6.9 145 60-213 375-553 (1394)
220 KOG0921 Dosage compensation co 97.8 4.7E-05 1E-09 94.2 8.6 209 1372-1600 2-245 (1282)
221 KOG3769 Ribonuclease III domai 97.6 0.00045 9.9E-09 75.8 11.3 71 1508-1594 232-302 (333)
222 PF14709 DND1_DSRM: double str 97.6 0.00016 3.5E-09 66.2 6.3 67 1371-1437 1-80 (80)
223 PF06862 DUF1253: Protein of u 97.5 0.033 7.2E-07 67.6 27.0 119 412-543 298-426 (442)
224 cd02846 PAZ_argonaute_like PAZ 97.4 0.00023 4.9E-09 71.0 6.3 65 906-970 31-98 (114)
225 KOG4334 Uncharacterized conser 97.4 0.00013 2.8E-09 84.3 4.9 68 1370-1438 374-443 (650)
226 PF12340 DUF3638: Protein of u 97.4 0.0007 1.5E-08 74.3 9.8 135 42-182 20-186 (229)
227 TIGR00376 DNA helicase, putati 97.4 0.00083 1.8E-08 86.9 12.0 67 44-116 156-224 (637)
228 KOG0952 DNA/RNA helicase MER3/ 97.3 0.00013 2.9E-09 92.4 4.1 113 60-183 944-1061(1230)
229 PF02562 PhoH: PhoH-like prote 97.3 0.00067 1.4E-08 74.0 8.9 55 47-105 6-61 (205)
230 COG0653 SecA Preprotein transl 97.3 0.013 2.8E-07 75.3 21.4 126 44-181 77-213 (822)
231 PF09848 DUF2075: Uncharacteri 97.3 0.0004 8.7E-09 84.1 7.6 95 61-182 3-97 (352)
232 KOG1802 RNA helicase nonsense 97.3 0.00071 1.5E-08 81.8 9.2 132 41-182 406-582 (935)
233 KOG1803 DNA helicase [Replicat 97.3 0.0011 2.4E-08 80.3 10.4 68 40-113 180-249 (649)
234 PF13604 AAA_30: AAA domain; P 97.2 0.0015 3.3E-08 71.8 10.4 66 45-120 1-69 (196)
235 KOG0921 Dosage compensation co 97.2 0.0016 3.5E-08 81.2 10.6 152 49-211 382-536 (1282)
236 PF13401 AAA_22: AAA domain; P 97.1 0.0017 3.6E-08 66.6 9.0 118 60-211 5-126 (131)
237 PF13245 AAA_19: Part of AAA d 97.0 0.0019 4.2E-08 58.7 7.3 59 53-113 2-62 (76)
238 COG3587 Restriction endonuclea 97.0 0.002 4.3E-08 80.7 8.9 75 469-544 479-568 (985)
239 KOG1132 Helicase of the DEAD s 96.9 0.0049 1.1E-07 77.8 11.6 42 37-78 13-59 (945)
240 PF13307 Helicase_C_2: Helicas 96.9 0.0039 8.4E-08 66.8 9.6 80 414-503 9-92 (167)
241 PF00636 Ribonuclease_3: Ribon 96.9 0.00047 1E-08 68.8 2.3 23 1324-1346 92-114 (114)
242 COG3421 Uncharacterized protei 96.9 0.001 2.2E-08 79.7 4.9 113 64-181 2-125 (812)
243 PF03368 Dicer_dimer: Dicer di 96.8 0.0015 3.3E-08 61.5 4.8 71 1511-1599 2-77 (90)
244 PRK06526 transposase; Provisio 96.7 0.0033 7.1E-08 71.8 7.0 37 59-101 98-134 (254)
245 PRK10536 hypothetical protein; 96.6 0.04 8.7E-07 61.9 14.6 58 44-105 57-116 (262)
246 KOG2340 Uncharacterized conser 96.5 0.26 5.6E-06 59.2 21.1 133 397-542 534-678 (698)
247 PLN03202 protein argonaute; Pr 96.5 0.0031 6.7E-08 84.6 6.4 84 905-1017 293-385 (900)
248 TIGR01447 recD exodeoxyribonuc 96.3 0.02 4.3E-07 73.3 11.5 67 48-115 148-215 (586)
249 PRK10875 recD exonuclease V su 96.3 0.018 3.9E-07 73.7 11.0 66 47-114 154-220 (615)
250 PRK08181 transposase; Validate 96.2 0.045 9.8E-07 63.0 13.0 56 47-109 89-149 (269)
251 TIGR01448 recD_rel helicase, p 96.2 0.033 7.1E-07 73.5 13.3 62 42-107 320-382 (720)
252 KOG1131 RNA polymerase II tran 96.0 0.018 3.8E-07 68.3 7.9 66 47-114 18-88 (755)
253 COG1875 NYN ribonuclease and A 95.9 0.038 8.2E-07 63.6 9.9 146 41-206 223-384 (436)
254 PRK12723 flagellar biosynthesi 95.7 0.1 2.2E-06 63.2 13.2 122 60-211 175-298 (388)
255 PRK04296 thymidine kinase; Pro 95.6 0.025 5.5E-07 61.9 6.8 34 62-101 5-38 (190)
256 PRK08727 hypothetical protein; 95.5 0.049 1.1E-06 61.9 8.9 34 61-100 43-76 (233)
257 PRK14722 flhF flagellar biosyn 95.4 0.15 3.4E-06 61.1 13.3 120 60-211 138-258 (374)
258 TIGR02768 TraA_Ti Ti-type conj 95.4 0.13 2.9E-06 68.2 14.0 101 43-181 350-452 (744)
259 PF00448 SRP54: SRP54-type pro 95.4 0.08 1.7E-06 58.1 10.1 121 62-210 4-125 (196)
260 KOG1805 DNA replication helica 95.4 0.059 1.3E-06 69.1 9.7 126 43-181 667-809 (1100)
261 cd00009 AAA The AAA+ (ATPases 95.3 0.16 3.5E-06 52.5 11.7 25 60-84 20-44 (151)
262 PF00580 UvrD-helicase: UvrD/R 95.3 0.036 7.7E-07 66.2 7.6 122 47-178 2-125 (315)
263 smart00382 AAA ATPases associa 95.3 0.034 7.3E-07 57.1 6.4 39 60-104 3-41 (148)
264 PTZ00112 origin recognition co 95.3 0.31 6.8E-06 62.9 15.6 43 43-85 756-807 (1164)
265 PRK07952 DNA replication prote 95.2 0.16 3.6E-06 57.5 11.8 46 48-99 79-133 (244)
266 PRK06835 DNA replication prote 95.0 0.19 4E-06 59.8 12.3 60 43-109 158-226 (329)
267 PRK12377 putative replication 95.0 0.18 3.8E-06 57.4 11.4 45 60-111 102-146 (248)
268 COG1484 DnaC DNA replication p 95.0 0.1 2.2E-06 59.9 9.5 49 59-114 105-153 (254)
269 PRK06893 DNA replication initi 94.9 0.087 1.9E-06 59.6 8.8 25 61-85 41-65 (229)
270 PRK05642 DNA replication initi 94.8 0.1 2.2E-06 59.3 9.2 42 168-209 97-138 (234)
271 PF13871 Helicase_C_4: Helicas 94.8 0.13 2.7E-06 58.8 9.7 57 465-521 52-116 (278)
272 PRK05703 flhF flagellar biosyn 94.8 0.27 5.8E-06 60.7 13.4 118 61-211 223-343 (424)
273 PRK08084 DNA replication initi 94.8 0.11 2.3E-06 59.2 9.2 47 49-101 31-81 (235)
274 PRK11889 flhF flagellar biosyn 94.8 0.29 6.3E-06 58.4 12.6 118 60-209 242-361 (436)
275 KOG2777 tRNA-specific adenosin 94.6 0.054 1.2E-06 66.2 6.5 64 1370-1438 89-154 (542)
276 PRK13889 conjugal transfer rel 94.6 0.32 6.9E-06 65.6 14.0 101 43-181 344-446 (988)
277 KOG0989 Replication factor C, 94.5 0.11 2.5E-06 58.6 8.2 38 47-84 38-82 (346)
278 smart00492 HELICc3 helicase su 94.4 0.11 2.3E-06 53.8 7.2 44 460-503 33-79 (141)
279 PRK00149 dnaA chromosomal repl 94.4 0.19 4E-06 63.2 10.7 48 61-113 150-197 (450)
280 TIGR03420 DnaA_homol_Hda DnaA 94.3 0.18 3.8E-06 57.1 9.7 25 60-84 39-63 (226)
281 PRK14974 cell division protein 94.3 0.31 6.8E-06 57.9 11.9 119 62-210 143-264 (336)
282 PF05621 TniB: Bacterial TniB 94.2 0.23 5E-06 57.1 9.9 61 60-120 62-123 (302)
283 PRK12422 chromosomal replicati 94.1 0.75 1.6E-05 57.2 15.0 44 61-111 143-186 (445)
284 COG1419 FlhF Flagellar GTP-bin 94.1 0.65 1.4E-05 55.5 13.5 119 60-210 204-323 (407)
285 TIGR02928 orc1/cdc6 family rep 94.1 0.41 9E-06 58.5 12.8 42 43-84 16-65 (365)
286 PRK14088 dnaA chromosomal repl 94.1 0.27 5.8E-06 61.3 11.1 46 61-111 132-177 (440)
287 PRK14086 dnaA chromosomal repl 94.0 0.95 2.1E-05 57.6 15.8 48 62-114 317-364 (617)
288 TIGR00362 DnaA chromosomal rep 94.0 0.25 5.4E-06 61.3 10.8 43 61-108 138-180 (405)
289 TIGR03015 pepcterm_ATPase puta 94.0 0.27 5.9E-06 57.2 10.6 40 43-82 21-66 (269)
290 TIGR00604 rad3 DNA repair heli 94.0 0.22 4.8E-06 66.2 10.9 98 399-503 507-615 (705)
291 PF00308 Bac_DnaA: Bacterial d 94.0 0.24 5.3E-06 55.5 9.5 48 62-114 37-84 (219)
292 smart00491 HELICc2 helicase su 93.8 0.34 7.3E-06 50.2 9.4 42 462-503 32-80 (142)
293 COG1939 Ribonuclease III famil 93.7 0.33 7.3E-06 47.4 8.3 113 1076-1224 14-126 (132)
294 PRK14087 dnaA chromosomal repl 93.6 0.25 5.3E-06 61.7 9.5 49 61-114 143-191 (450)
295 PRK13826 Dtr system oriT relax 93.6 0.77 1.7E-05 62.4 14.6 101 43-181 379-481 (1102)
296 PRK00411 cdc6 cell division co 93.3 0.91 2E-05 56.2 14.1 43 42-84 30-80 (394)
297 COG1474 CDC6 Cdc6-related prot 93.1 1.5 3.3E-05 53.0 14.8 42 44-85 19-68 (366)
298 PRK06921 hypothetical protein; 93.1 0.27 5.9E-06 56.8 8.2 43 60-108 118-160 (266)
299 PF05970 PIF1: PIF1-like helic 92.9 0.2 4.3E-06 61.0 7.2 70 46-121 2-80 (364)
300 PRK14956 DNA polymerase III su 92.6 0.34 7.3E-06 59.8 8.4 23 62-84 43-65 (484)
301 cd01120 RecA-like_NTPases RecA 92.4 0.96 2.1E-05 47.7 11.0 38 62-105 2-39 (165)
302 PRK11054 helD DNA helicase IV; 92.4 0.47 1E-05 62.2 10.0 71 44-117 195-265 (684)
303 PRK14949 DNA polymerase III su 92.3 0.33 7.2E-06 63.6 8.2 23 62-84 41-63 (944)
304 PRK10919 ATP-dependent DNA hel 92.1 0.23 5E-06 65.5 6.7 89 45-158 2-90 (672)
305 PRK12402 replication factor C 92.1 0.59 1.3E-05 56.4 9.9 40 45-84 18-61 (337)
306 PF13177 DNA_pol3_delta2: DNA 92.1 2.1 4.5E-05 45.6 12.8 121 60-210 20-142 (162)
307 PRK00771 signal recognition pa 92.0 1.6 3.4E-05 54.0 13.4 55 61-120 97-152 (437)
308 PRK08116 hypothetical protein; 91.8 1.5 3.2E-05 50.9 12.1 59 46-111 89-159 (268)
309 PF01695 IstB_IS21: IstB-like 91.6 0.31 6.8E-06 52.7 5.9 43 59-108 47-89 (178)
310 PRK08903 DnaA regulatory inact 91.6 0.74 1.6E-05 52.1 9.3 38 48-85 26-68 (227)
311 KOG4334 Uncharacterized conser 91.5 0.12 2.7E-06 60.6 2.7 63 1512-1593 379-441 (650)
312 TIGR02881 spore_V_K stage V sp 91.5 0.39 8.5E-06 55.6 7.0 25 60-84 43-67 (261)
313 PRK06731 flhF flagellar biosyn 91.4 2.3 5E-05 49.0 13.0 119 60-210 76-196 (270)
314 PLN03025 replication factor C 91.3 0.88 1.9E-05 54.4 10.0 37 48-84 19-59 (319)
315 PRK09183 transposase/IS protei 91.2 0.91 2E-05 52.3 9.5 43 59-108 102-144 (259)
316 PRK08939 primosomal protein Dn 90.9 0.66 1.4E-05 54.7 8.2 26 60-85 157-182 (306)
317 cd01122 GP4d_helicase GP4d_hel 90.9 2.3 4.9E-05 49.6 12.7 113 60-182 31-154 (271)
318 COG3973 Superfamily I DNA and 90.9 0.64 1.4E-05 57.2 8.0 72 59-156 226-297 (747)
319 PRK12726 flagellar biosynthesi 90.8 2 4.3E-05 51.4 11.8 102 60-193 207-310 (407)
320 PF00004 AAA: ATPase family as 90.7 0.86 1.9E-05 46.3 8.0 22 62-83 1-22 (132)
321 PRK12727 flagellar biosynthesi 90.6 2.2 4.7E-05 53.3 12.3 119 60-211 351-470 (559)
322 PRK14723 flhF flagellar biosyn 90.4 1.8 3.9E-05 56.5 12.1 116 62-210 188-305 (767)
323 TIGR03499 FlhF flagellar biosy 90.3 1.3 2.7E-05 51.9 9.8 25 61-85 196-220 (282)
324 TIGR01425 SRP54_euk signal rec 90.3 2.1 4.5E-05 52.5 11.8 57 62-123 103-160 (429)
325 PHA03333 putative ATPase subun 90.0 3.7 7.9E-05 52.4 13.7 60 53-117 181-240 (752)
326 PRK07003 DNA polymerase III su 89.9 1.3 2.9E-05 57.1 10.0 23 62-84 41-63 (830)
327 PRK05707 DNA polymerase III su 89.9 1.5 3.2E-05 52.4 10.0 40 45-84 3-47 (328)
328 PHA02533 17 large terminase pr 89.9 3.7 8E-05 52.3 14.1 71 42-116 56-127 (534)
329 PF05496 RuvB_N: Holliday junc 89.9 0.53 1.2E-05 51.8 5.7 24 60-83 51-74 (233)
330 KOG1513 Nuclear helicase MOP-3 89.8 0.37 8E-06 60.2 4.8 154 43-210 262-454 (1300)
331 PRK14964 DNA polymerase III su 89.7 1.5 3.3E-05 54.8 10.2 25 60-84 36-60 (491)
332 PRK14960 DNA polymerase III su 89.4 1.2 2.5E-05 56.9 9.0 36 49-84 22-62 (702)
333 KOG0344 ATP-dependent RNA heli 89.4 1.7 3.6E-05 53.6 9.9 122 67-214 365-486 (593)
334 CHL00181 cbbX CbbX; Provisiona 89.3 1.7 3.7E-05 50.9 9.9 25 60-84 60-84 (287)
335 TIGR01074 rep ATP-dependent DN 89.3 1.4 3E-05 58.6 10.3 89 46-159 2-90 (664)
336 PRK12323 DNA polymerase III su 89.1 1.4 2.9E-05 56.3 9.1 23 62-84 41-63 (700)
337 PRK14959 DNA polymerase III su 89.0 1.1 2.4E-05 57.2 8.5 25 60-84 39-63 (624)
338 TIGR00959 ffh signal recogniti 89.0 3.9 8.4E-05 50.5 12.9 58 62-123 102-160 (428)
339 COG2256 MGS1 ATPase related to 88.9 1.6 3.6E-05 51.6 9.0 23 60-82 49-71 (436)
340 PRK12724 flagellar biosynthesi 88.8 4.4 9.6E-05 49.3 12.9 116 62-211 226-345 (432)
341 PRK14958 DNA polymerase III su 88.8 1.6 3.4E-05 55.4 9.6 23 62-84 41-63 (509)
342 PF03354 Terminase_1: Phage Te 88.7 1.7 3.8E-05 55.0 10.1 68 48-117 1-78 (477)
343 PRK14962 DNA polymerase III su 88.7 1.6 3.5E-05 54.7 9.5 23 62-84 39-61 (472)
344 PRK08691 DNA polymerase III su 88.6 2.3 5E-05 54.9 10.8 25 60-84 39-63 (709)
345 PRK10867 signal recognition pa 88.5 4.3 9.2E-05 50.2 12.8 57 62-122 103-160 (433)
346 COG0593 DnaA ATPase involved i 88.3 1.7 3.7E-05 52.6 9.0 37 61-101 115-151 (408)
347 TIGR02760 TraI_TIGR conjugativ 88.3 2.8 6E-05 61.6 12.8 134 43-206 427-563 (1960)
348 TIGR00064 ftsY signal recognit 88.3 6.5 0.00014 45.7 13.6 24 62-85 75-98 (272)
349 TIGR01075 uvrD DNA helicase II 88.2 0.81 1.8E-05 61.1 7.0 71 45-118 4-74 (715)
350 PRK11773 uvrD DNA-dependent he 88.2 0.96 2.1E-05 60.4 7.6 71 45-118 9-79 (721)
351 PRK13833 conjugal transfer pro 88.0 1 2.2E-05 53.3 6.8 56 46-105 129-186 (323)
352 PRK04195 replication factor C 88.0 2.3 5E-05 53.9 10.6 24 60-83 40-63 (482)
353 PRK13894 conjugal transfer ATP 87.9 1 2.2E-05 53.5 6.7 56 46-105 133-190 (319)
354 cd00984 DnaB_C DnaB helicase C 87.9 1.5 3.2E-05 50.1 8.1 37 60-101 14-50 (242)
355 PRK14963 DNA polymerase III su 87.9 2.5 5.5E-05 53.5 10.6 23 62-84 39-61 (504)
356 PF05707 Zot: Zonular occluden 87.9 0.61 1.3E-05 51.3 4.6 43 168-211 79-127 (193)
357 TIGR02782 TrbB_P P-type conjug 87.7 3.2 6.9E-05 48.9 10.7 54 48-105 119-174 (299)
358 PRK09112 DNA polymerase III su 87.7 3.4 7.4E-05 49.8 11.1 25 61-85 47-71 (351)
359 PRK14961 DNA polymerase III su 87.7 1.9 4.1E-05 52.6 9.1 23 62-84 41-63 (363)
360 PRK14721 flhF flagellar biosyn 87.7 4.9 0.00011 49.3 12.5 117 62-210 194-311 (420)
361 PF11469 Ribonucleas_3_2: Ribo 87.5 4.1 8.9E-05 38.1 8.7 79 1080-1222 3-85 (120)
362 PRK06645 DNA polymerase III su 87.1 1.9 4E-05 54.4 8.8 25 60-84 44-68 (507)
363 PRK00440 rfc replication facto 87.1 5.6 0.00012 47.5 12.8 38 46-83 21-62 (319)
364 PRK14957 DNA polymerase III su 87.0 2.1 4.5E-05 54.4 9.2 23 62-84 41-63 (546)
365 TIGR03117 cas_csf4 CRISPR-asso 87.0 1.5 3.2E-05 56.5 8.0 80 413-504 469-562 (636)
366 PHA03368 DNA packaging termina 87.0 2.9 6.4E-05 53.0 10.1 127 60-209 255-389 (738)
367 PTZ00293 thymidine kinase; Pro 86.9 2 4.3E-05 47.3 7.7 35 62-102 7-41 (211)
368 PRK07994 DNA polymerase III su 86.8 2.2 4.7E-05 55.2 9.3 24 62-85 41-64 (647)
369 PF13173 AAA_14: AAA domain 86.8 4.3 9.4E-05 41.2 9.9 25 60-84 3-27 (128)
370 COG1219 ClpX ATP-dependent pro 86.8 0.54 1.2E-05 53.5 3.3 25 59-83 97-121 (408)
371 cd03115 SRP The signal recogni 86.7 7.2 0.00016 41.9 12.1 24 62-85 3-26 (173)
372 PRK07764 DNA polymerase III su 86.7 1.9 4.1E-05 57.6 8.9 23 62-84 40-62 (824)
373 PF05876 Terminase_GpA: Phage 86.7 1.7 3.6E-05 55.9 8.2 156 43-213 14-182 (557)
374 TIGR02688 conserved hypothetic 86.5 1.8 3.9E-05 52.3 7.7 24 59-82 209-232 (449)
375 PRK08451 DNA polymerase III su 86.5 4 8.7E-05 51.6 11.2 23 62-84 39-61 (535)
376 TIGR03689 pup_AAA proteasome A 86.4 2.6 5.7E-05 52.9 9.5 24 60-83 217-240 (512)
377 PRK11331 5-methylcytosine-spec 86.1 2.3 5E-05 52.1 8.5 39 45-83 179-218 (459)
378 PHA02544 44 clamp loader, smal 86.1 5.9 0.00013 47.3 12.1 40 43-82 22-66 (316)
379 cd01124 KaiC KaiC is a circadi 86.0 1.5 3.3E-05 47.7 6.5 47 62-115 2-48 (187)
380 PRK14952 DNA polymerase III su 85.8 3.6 7.9E-05 52.8 10.5 23 62-84 38-60 (584)
381 PRK06995 flhF flagellar biosyn 85.8 4.4 9.4E-05 50.6 10.8 57 62-121 259-316 (484)
382 PF06733 DEAD_2: DEAD_2; Inte 85.8 0.47 1E-05 51.2 2.3 43 140-182 115-159 (174)
383 PRK05896 DNA polymerase III su 85.7 3.3 7.1E-05 52.9 9.8 38 47-84 21-63 (605)
384 PRK14712 conjugal transfer nic 85.5 4.9 0.00011 56.8 12.2 61 44-106 834-897 (1623)
385 PRK08769 DNA polymerase III su 85.5 4.1 8.9E-05 48.3 10.0 40 45-84 4-51 (319)
386 PF02456 Adeno_IVa2: Adenoviru 85.5 0.75 1.6E-05 52.2 3.6 41 62-106 90-130 (369)
387 COG4626 Phage terminase-like p 85.3 8.2 0.00018 48.1 12.6 176 40-238 56-248 (546)
388 PRK14965 DNA polymerase III su 85.1 2.6 5.7E-05 54.5 8.9 24 61-84 40-63 (576)
389 COG1435 Tdk Thymidine kinase [ 84.9 4.4 9.5E-05 43.6 8.8 90 62-182 7-96 (201)
390 PRK10416 signal recognition pa 84.9 11 0.00024 44.8 13.3 120 62-210 117-244 (318)
391 KOG1807 Helicases [Replication 84.4 2.7 5.8E-05 53.2 7.9 88 41-129 374-462 (1025)
392 CHL00095 clpC Clp protease ATP 84.3 4.7 0.0001 54.7 11.2 40 45-84 182-225 (821)
393 PRK14955 DNA polymerase III su 84.0 3.2 6.9E-05 51.2 8.7 23 62-84 41-63 (397)
394 PF08423 Rad51: Rad51; InterP 84.0 2.1 4.6E-05 49.2 6.7 111 53-180 26-145 (256)
395 TIGR02785 addA_Gpos recombinat 83.8 2.9 6.4E-05 59.1 9.2 138 46-195 2-143 (1232)
396 PRK14969 DNA polymerase III su 83.7 2.9 6.4E-05 53.3 8.4 23 62-84 41-63 (527)
397 PRK06964 DNA polymerase III su 83.7 4.3 9.3E-05 48.6 9.2 38 47-84 3-46 (342)
398 PRK10917 ATP-dependent DNA hel 83.7 3.8 8.2E-05 54.4 9.7 96 395-498 292-389 (681)
399 TIGR00678 holB DNA polymerase 83.7 5.5 0.00012 43.5 9.5 26 60-85 15-40 (188)
400 PRK14948 DNA polymerase III su 83.6 3.7 8.1E-05 53.3 9.3 25 60-84 39-63 (620)
401 PRK13709 conjugal transfer nic 83.4 7.4 0.00016 55.9 12.6 62 43-106 965-1029(1747)
402 KOG0349 Putative DEAD-box RNA 83.3 0.3 6.5E-06 56.8 -0.6 41 44-84 23-64 (725)
403 PRK07940 DNA polymerase III su 83.3 9.2 0.0002 46.9 12.0 24 61-84 38-61 (394)
404 PRK13342 recombination factor 83.2 4.2 9.2E-05 50.5 9.4 23 60-82 37-59 (413)
405 PRK14951 DNA polymerase III su 83.2 3.2 6.9E-05 53.6 8.3 23 62-84 41-63 (618)
406 PRK05563 DNA polymerase III su 83.2 4.2 9.2E-05 52.3 9.5 37 48-84 22-63 (559)
407 TIGR02639 ClpA ATP-dependent C 83.1 4.4 9.6E-05 54.2 10.1 40 46-85 186-229 (731)
408 PRK06090 DNA polymerase III su 83.1 7.4 0.00016 46.1 10.8 41 44-84 2-50 (319)
409 PF01637 Arch_ATPase: Archaeal 82.9 2.3 5E-05 47.9 6.5 55 151-209 105-164 (234)
410 PRK07133 DNA polymerase III su 82.8 3.2 7E-05 54.1 8.2 23 62-84 43-65 (725)
411 PHA00729 NTP-binding motif con 82.8 4.7 0.0001 44.9 8.4 55 60-115 18-79 (226)
412 PF06745 KaiC: KaiC; InterPro 82.6 6.8 0.00015 44.2 10.0 127 60-209 20-159 (226)
413 PLN03187 meiotic recombination 82.5 2.3 4.9E-05 50.9 6.3 42 62-103 129-170 (344)
414 TIGR03881 KaiC_arch_4 KaiC dom 82.4 16 0.00036 41.2 13.1 46 60-112 21-66 (229)
415 TIGR02760 TraI_TIGR conjugativ 82.3 6.6 0.00014 57.9 11.9 58 43-105 1017-1080(1960)
416 TIGR01073 pcrA ATP-dependent D 82.2 2.4 5.2E-05 56.9 7.1 88 45-158 4-91 (726)
417 KOG0739 AAA+-type ATPase [Post 82.1 6.9 0.00015 44.3 9.2 100 60-209 167-276 (439)
418 PRK06871 DNA polymerase III su 82.1 8.7 0.00019 45.6 10.8 39 46-84 3-49 (325)
419 PRK03992 proteasome-activating 82.0 3.9 8.4E-05 50.3 8.3 23 60-82 166-188 (389)
420 PRK05580 primosome assembly pr 82.0 10 0.00022 50.3 12.6 94 396-500 173-266 (679)
421 cd01121 Sms Sms (bacterial rad 81.9 6.4 0.00014 47.8 9.9 57 51-114 68-130 (372)
422 PRK07471 DNA polymerase III su 81.9 7.6 0.00016 47.1 10.5 25 61-85 43-67 (365)
423 TIGR03600 phage_DnaB phage rep 81.8 4.3 9.2E-05 50.7 8.7 114 62-181 197-318 (421)
424 PRK13341 recombination factor 81.6 4.4 9.5E-05 53.5 8.9 23 60-82 53-75 (725)
425 PRK08506 replicative DNA helic 81.4 3.5 7.6E-05 51.9 7.8 113 62-181 195-315 (472)
426 PRK06647 DNA polymerase III su 81.1 5.3 0.00011 51.3 9.2 23 62-84 41-63 (563)
427 PRK09111 DNA polymerase III su 80.6 5.5 0.00012 51.5 9.1 25 60-84 47-71 (598)
428 PRK11034 clpA ATP-dependent Cl 80.6 3.7 8E-05 54.5 7.8 27 59-85 207-233 (758)
429 PF14617 CMS1: U3-containing 9 80.5 2.7 5.9E-05 47.6 5.7 88 91-181 124-214 (252)
430 PHA00350 putative assembly pro 80.3 11 0.00024 45.8 11.0 24 62-85 4-28 (399)
431 KOG3792 Transcription factor N 80.1 1.4 3.1E-05 54.8 3.5 182 1372-1593 371-569 (816)
432 KOG2028 ATPase related to the 79.9 8.5 0.00019 44.8 9.2 22 60-81 163-184 (554)
433 PRK06305 DNA polymerase III su 79.8 5.3 0.00011 50.0 8.5 25 60-84 40-64 (451)
434 PRK14950 DNA polymerase III su 79.7 6.5 0.00014 51.1 9.6 23 62-84 41-63 (585)
435 COG1197 Mfd Transcription-repa 79.5 5.3 0.00011 53.9 8.5 84 92-181 802-886 (1139)
436 PF05729 NACHT: NACHT domain 79.4 6.8 0.00015 41.3 8.3 24 62-85 3-26 (166)
437 KOG0442 Structure-specific end 79.4 2.1E+02 0.0045 37.8 21.7 151 45-211 13-165 (892)
438 TIGR00595 priA primosomal prot 79.1 13 0.00027 47.5 11.6 94 396-500 8-101 (505)
439 COG0470 HolB ATPase involved i 78.8 7.2 0.00016 46.7 9.1 23 62-84 27-49 (325)
440 PRK14954 DNA polymerase III su 78.5 5.8 0.00013 51.4 8.4 24 61-84 40-63 (620)
441 COG0552 FtsY Signal recognitio 78.5 22 0.00048 41.7 12.1 93 62-183 142-236 (340)
442 PRK09361 radB DNA repair and r 78.3 6.2 0.00014 44.5 7.9 44 52-101 10-59 (225)
443 PRK10865 protein disaggregatio 78.0 4.4 9.5E-05 55.0 7.5 25 60-84 200-224 (857)
444 PF01443 Viral_helicase1: Vira 78.0 2.1 4.5E-05 48.6 3.9 19 62-80 1-19 (234)
445 COG1702 PhoH Phosphate starvat 77.9 3.1 6.7E-05 48.5 5.1 55 46-104 129-184 (348)
446 TIGR03346 chaperone_ClpB ATP-d 77.7 5.5 0.00012 54.3 8.4 38 47-84 178-219 (852)
447 PRK05748 replicative DNA helic 77.5 7.5 0.00016 48.9 9.0 114 62-181 206-327 (448)
448 PRK11823 DNA repair protein Ra 77.4 11 0.00023 47.3 10.1 56 52-114 67-128 (446)
449 PF00931 NB-ARC: NB-ARC domain 77.4 6 0.00013 46.4 7.7 53 62-117 22-74 (287)
450 PRK07993 DNA polymerase III su 77.2 9.9 0.00022 45.6 9.4 40 45-84 2-49 (334)
451 cd01129 PulE-GspE PulE/GspE Th 77.2 3.7 8.1E-05 47.5 5.7 57 43-105 61-120 (264)
452 cd01123 Rad51_DMC1_radA Rad51_ 77.0 7.6 0.00016 44.1 8.1 41 62-102 22-62 (235)
453 TIGR02640 gas_vesic_GvpN gas v 76.9 3.3 7.2E-05 47.9 5.2 36 46-81 3-43 (262)
454 PRK06904 replicative DNA helic 76.7 15 0.00033 46.2 11.3 116 60-181 221-347 (472)
455 PF05127 Helicase_RecD: Helica 76.7 2.5 5.4E-05 45.3 3.7 99 63-180 1-102 (177)
456 PHA00012 I assembly protein 76.6 9.2 0.0002 44.6 8.3 45 167-211 80-129 (361)
457 TIGR00767 rho transcription te 76.5 4.2 9E-05 49.1 5.8 25 59-83 168-192 (415)
458 cd01393 recA_like RecA is a b 76.4 7.3 0.00016 43.9 7.7 43 62-104 22-64 (226)
459 PRK05973 replicative DNA helic 76.3 3.7 8E-05 46.3 5.1 48 61-115 66-113 (237)
460 TIGR02238 recomb_DMC1 meiotic 76.2 4.4 9.6E-05 48.0 6.0 52 53-104 84-141 (313)
461 PRK09376 rho transcription ter 76.2 4.6 0.0001 48.5 6.1 27 58-84 168-194 (416)
462 PF12846 AAA_10: AAA-like doma 76.1 3 6.4E-05 49.3 4.7 37 60-102 2-38 (304)
463 PRK13851 type IV secretion sys 75.6 3.4 7.5E-05 49.4 4.9 49 51-106 152-202 (344)
464 cd01131 PilT Pilus retraction 75.4 3.3 7.2E-05 45.7 4.5 39 62-105 4-42 (198)
465 PRK04301 radA DNA repair and r 75.3 7.5 0.00016 46.4 7.7 41 62-102 105-145 (317)
466 TIGR02397 dnaX_nterm DNA polym 75.2 11 0.00024 45.8 9.4 24 61-84 38-61 (355)
467 COG1618 Predicted nucleotide k 74.7 4.5 9.9E-05 41.9 4.7 106 60-180 6-112 (179)
468 KOG1133 Helicase of the DEAD s 74.6 4.3 9.3E-05 51.0 5.4 40 40-79 10-54 (821)
469 KOG1513 Nuclear helicase MOP-3 74.6 4.4 9.6E-05 51.3 5.4 61 467-527 850-922 (1300)
470 PRK07004 replicative DNA helic 74.3 7.9 0.00017 48.6 7.9 114 62-181 216-337 (460)
471 PF01745 IPT: Isopentenyl tran 74.2 4 8.7E-05 44.5 4.4 34 62-105 4-37 (233)
472 PRK14953 DNA polymerase III su 74.1 14 0.0003 46.7 10.0 23 62-84 41-63 (486)
473 TIGR00665 DnaB replicative DNA 73.9 10 0.00023 47.5 8.9 113 62-181 198-318 (434)
474 COG1221 PspF Transcriptional r 73.7 8.3 0.00018 46.7 7.4 95 49-181 86-186 (403)
475 KOG1806 DEAD box containing he 73.6 7.6 0.00017 50.9 7.3 69 43-115 736-805 (1320)
476 TIGR03877 thermo_KaiC_1 KaiC d 73.2 6.4 0.00014 44.8 6.2 48 60-114 22-69 (237)
477 TIGR01547 phage_term_2 phage t 73.1 16 0.00034 45.3 10.1 134 62-213 4-143 (396)
478 PRK13900 type IV secretion sys 73.0 5.7 0.00012 47.5 5.9 47 52-105 151-199 (332)
479 PRK08006 replicative DNA helic 72.8 13 0.00028 46.9 9.2 114 62-181 227-349 (471)
480 KOG0745 Putative ATP-dependent 72.3 2.9 6.2E-05 49.8 3.0 24 59-82 226-249 (564)
481 TIGR00643 recG ATP-dependent D 72.0 13 0.00028 49.0 9.4 96 395-498 266-363 (630)
482 PLN03186 DNA repair protein RA 71.4 8.4 0.00018 46.2 6.8 43 62-104 126-168 (342)
483 COG0513 SrmB Superfamily II DN 71.2 38 0.00082 43.4 13.1 99 417-527 102-213 (513)
484 PRK07399 DNA polymerase III su 71.0 22 0.00048 42.2 10.2 26 60-85 27-52 (314)
485 PF14954 LIX1: Limb expression 70.7 3.6 7.8E-05 43.9 3.0 71 1508-1591 21-93 (252)
486 PF01935 DUF87: Domain of unkn 70.5 5.6 0.00012 45.0 5.0 44 55-103 19-62 (229)
487 TIGR02880 cbbX_cfxQ probable R 70.5 6.2 0.00014 46.2 5.4 26 60-85 59-84 (284)
488 TIGR00580 mfd transcription-re 70.3 17 0.00036 49.6 10.0 79 414-498 500-579 (926)
489 COG1224 TIP49 DNA helicase TIP 69.7 5.2 0.00011 46.6 4.2 26 59-84 65-90 (450)
490 COG2874 FlaH Predicted ATPases 69.5 1.2E+02 0.0026 33.5 14.0 130 62-213 31-170 (235)
491 COG0324 MiaA tRNA delta(2)-iso 69.1 12 0.00025 43.9 7.0 95 62-170 6-119 (308)
492 CHL00176 ftsH cell division pr 69.1 17 0.00038 47.4 9.4 23 60-82 217-239 (638)
493 PRK10436 hypothetical protein; 69.0 7 0.00015 48.9 5.6 40 43-82 199-241 (462)
494 KOG0298 DEAD box-containing he 68.8 9.5 0.00021 51.4 6.8 96 412-522 1219-1315(1394)
495 TIGR03878 thermo_KaiC_2 KaiC d 68.6 6.3 0.00014 45.5 4.8 33 62-100 39-71 (259)
496 TIGR03345 VI_ClpV1 type VI sec 68.6 23 0.00049 48.2 10.7 25 60-84 209-233 (852)
497 PRK08760 replicative DNA helic 68.4 13 0.00029 46.9 8.0 113 62-181 232-352 (476)
498 PRK13695 putative NTPase; Prov 68.3 61 0.0013 34.7 12.2 23 61-83 2-24 (174)
499 PHA02542 41 41 helicase; Provi 68.3 11 0.00024 47.4 7.1 45 62-113 193-237 (473)
500 PF00437 T2SE: Type II/IV secr 68.3 6.6 0.00014 45.7 5.0 51 49-105 115-167 (270)
No 1
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=100.00 E-value=1.4e-62 Score=635.82 Aligned_cols=1301 Identities=23% Similarity=0.267 Sum_probs=774.4
Q ss_pred HHhhcCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-ChHHHHHH
Q 000379 113 IRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMK 191 (1604)
Q Consensus 113 i~~~~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im~ 191 (1604)
...++...+...++......|+..+|.......++.++|++.+++.+.+++..+.+..++++||||+.... |++...|.
T Consensus 7 ~~~~~~~~~l~~~~~e~~~~~~s~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1606)
T KOG0701|consen 7 KSTHTPLKVLEVFPLESRGLSTSKRHKQECTHHHVSILTAIGALNLLFGGYLLLSDRVLLVFDECHNLVMDAHPRRHFMD 86 (1606)
T ss_pred hhcccccccccccccccccccchhhhhhhhhhcccchhhhhhhhhhhcCchhhhhhhhhhccccccccccccCcchhhhh
Confidence 34455666666777777777887788999999999999999999999999999999999999999999876 77777776
Q ss_pred HHHhhc-CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccch
Q 000379 192 EFYHKS-DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDL 270 (1604)
Q Consensus 192 ~~~~~~-~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l 270 (1604)
..-... ...|+++|+||.+...+ +........+..++..+...+.+.++...+..|...|.+.+.-.-.......
T Consensus 87 ~~~~~~~~s~pr~~~~~a~~~~~~--~~~~~~~~~~k~~e~~~~~~~~t~~~~v~~~~~t~~~~~vm~~~~~~~~~~~-- 162 (1606)
T KOG0701|consen 87 LSSSGPSFSVPRILGLTASLLNDK--FWLEELDEDLKKLEYLSESRIETASDLVSLVRYTSNPFEVMVCCLDAEYGPL-- 162 (1606)
T ss_pred cccccCCCCcchhhhccCCCcCCC--cchhhhhHHHHHHHHHHHhChhhhccceEeeeccCCCeEEeeehhhhhhhhh--
Confidence 542211 36699999999988654 5566778889999999999999888877777888888776654311110000
Q ss_pred hhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH--
Q 000379 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE-- 348 (1604)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~-- 348 (1604)
.+ ..+ .....+ .+++-.- .-.+.........-..|+||..+.+.....+...-.....
T Consensus 163 ------~~-~~~--------~~~~~~-~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 222 (1606)
T KOG0701|consen 163 ------LI-NKD--------KLICVF-LIPDCIV----ITFQKQYTLLKVLFKKGPWCSVKWIAQDVRELPKVIAGNPAE 222 (1606)
T ss_pred ------hc-ccc--------ceeEEe-ccCccee----eeccccchhhhhhcccCcchhhHHHHHHHhhcceeecCCHHH
Confidence 00 000 000000 0000000 0000011112223345666665544433333221100000
Q ss_pred -HH-----HHhhHHHHHHHHHHHHHHhhhcCccchh--hcc--ccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEE
Q 000379 349 -IY-----RQSSLQCKYFLEEVLHVIGSALPLADKI--FLD--FGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCI 418 (1604)
Q Consensus 349 -~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~--~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~I 418 (1604)
.+ ..........+....+............ .+. ...+..+ +......+-+..- .+++. ....+|
T Consensus 223 ~~~~~e~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-l~~~~~~~~v~k~--~l~~~---~~l~~i 296 (1606)
T KOG0701|consen 223 LHYCEEVFSDSELRFLMSIPRLLERLRDSKHEYIHQFEVLRKYEPHDVFR-LIHESVCPLVDKE--YLEKI---ETLSGI 296 (1606)
T ss_pred hhhhhhhcCcHHHHHHHhHHHHHHHhhhcchhhhcccceeeeecccccce-eehhhcCchhhHH--HHHhh---hhhhhe
Confidence 00 0000000000111111111110000000 000 0000000 0000011111110 22222 124679
Q ss_pred EEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCC-----CCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCc
Q 000379 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVD-----ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493 (1604)
Q Consensus 419 IFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~-----~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~ 493 (1604)
+||+.+.++..+.+++.... -..+..+.|...... ......|.+++..|+..++|+|++|++++||+|++.|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 297 IFVDQRYTAYVLLELLREIF---SNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred eecccchHHHHHHHHHHHhh---ccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 99999999999999888752 233444666432110 1122347899999999999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHhhhhcccCceEEEEEeccCHHHHHHHHHHHHHHHhhhhccccCCchhhhhhcccccccccee
Q 000379 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYI 573 (1604)
Q Consensus 494 nlVI~fD~p~s~~syiQr~GRA~R~gs~~i~~v~~~~~~~~~~l~~~~~~e~~~~~~~~~r~~~~~~l~~~~~~~~~~y~ 573 (1604)
+.|+++|.|...++|+|+.||+++.++.++++....+...... .. ..-.+.+.+ +++.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~~~~~i~~~t~~~~~~~~-----~s--~~~~~~i~~---------------~~l~ 431 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAADSYLVILGETLSAVSLKN-----PS--YAYTEQIPR---------------PQLF 431 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccchhhHHHHHhhhhhhhhcC-----hh--HhHHhhccc---------------chhh
Confidence 9999999999999999999999999998777765322111100 00 000000000 1111
Q ss_pred -ecCCCceechhhHHHHHHHHHhhCCCCCCCCCcceEEEEecCceEEEEEEccCCCCcc-eeecCCCCChHHHHHHHHHH
Q 000379 574 -VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLE 651 (1604)
Q Consensus 574 -v~~tga~l~~~~a~~~l~~yc~~l~~d~~~~~~p~~~~~~~~~~~~~~v~LP~~~~~~-~~~g~~~~~k~~Ak~~aaf~ 651 (1604)
....| ++.||++.--.. ..-+.-+|.||.++|.+ .+.|
T Consensus 432 ~~~~~~-----------v~~~~~~~e~~~-------------~~~~~~~v~~~~~~p~~~~~~~---------------- 471 (1606)
T KOG0701|consen 432 LRLDAN-----------VNKYCARAELLK-------------HVPFLSTVVLPVNSPLKMCIVG---------------- 471 (1606)
T ss_pred cccccc-----------hHHHHHHHHhcc-------------CCCcceeEEEecCchHHHHHHH----------------
Confidence 11111 888998642211 12344578999888876 3444
Q ss_pred HHHHHHhcCCCCCCCCCCCCCcccc--cccccc-----CCCCCCCCCccccccccccccccccCcccCCCceEEEEEEEE
Q 000379 652 ACEKLHQVGALNDHLLPSVEEPSEN--NLISKK-----NESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN 724 (1604)
Q Consensus 652 ac~~L~~~g~ld~~L~P~~~~~~~~--~~~~~~-----~~~~~~~g~~k~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 724 (1604)
+|.+||+.|++||+|+|.++++... ++...+ ....+.+|+++|++.|.+..++.+.+.... .+.+++.|.+.
T Consensus 472 ~~~~l~~~~~~d~~~~~~gk~~~~~~~~~~~~~~ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~-~~~~c~~~~~~ 550 (1606)
T KOG0701|consen 472 LCLKLHKIGELDDCLHPKGKEPKACLEEVDTEEEEEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPK-ADQPCYLYVIG 550 (1606)
T ss_pred hHHHHHHhhhhhhhhcccccchHHhhhhhccccchhhccccCCCCCcccccccccchhHHHhcccccC-CCCceeeeeec
Confidence 9999999999999999999775210 110011 123457889999998887777766555543 24556666543
Q ss_pred e--eeccccc-------------cccceEEeeccccCCcCCCceeeEEeecceeEEEEecCcc-cccCHHHHHHHHHHHH
Q 000379 725 F--ACSIVTE-------------IYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQ-VHLDADQMSKAKCFQE 788 (1604)
Q Consensus 725 ~--~~~~~~~-------------~~~~~~ll~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~ 788 (1604)
. .++.+++ ....|++++-.++|. ...++++...|.++++...... ..+..++++....|+.
T Consensus 551 ~~~~~~~~e~~n~~~r~~~~~~~~~~~~~~l~~~~i~~---~~~~~~a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~ 627 (1606)
T KOG0701|consen 551 LELTMPLPEERNFERRKLYPPEDLTYCFGILTAKLIPK---IPHFPVATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLN 627 (1606)
T ss_pred cceecCCchhcccccccccCchhhhhhhcccchhhhcc---cccccceeccCchhHHHHHhhhhhhcchhhccCcchhcc
Confidence 2 1211111 123577887777775 3356777777766665443221 3467788888899999
Q ss_pred HHHHHhhhhchhcccCCCCcchhhcccccCCCCCCceEEEEeccccccCCCCCccccccccccccchhhhhhhhcccccc
Q 000379 789 LFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAA 868 (1604)
Q Consensus 789 ~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~~~~~~~~IDw~~~~~~~~~~~~~~~~~~~~~~ 868 (1604)
.+|..+.. + .+.+ .+| ++. .....+.++|++... -...+.|+|.+|+.+.....++
T Consensus 628 ~~~~~v~~-~---~~~~--~~~---~~~----~~~l~~~llp~~~~~--~~~~~~i~~k~l~~iv~~~~~~--------- 683 (1606)
T KOG0701|consen 628 YIFTEVLR-L---AKIN--LEF---DPK----TAELIETLLPLNVLA--DKRAIIIVRKFLEAIVAPSDLM--------- 683 (1606)
T ss_pred cchhhhhh-h---hccc--ccc---CCc----hhhHHHHhccccccc--ccchhhhHHHHHHHHhCccccc---------
Confidence 88888764 2 1211 222 111 123457788876432 1124678898886532211111
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcceeccCCCcCcccccCcEEEeccC-CceEEEEEecCCCCCCCCCCCCCCCCCchH
Q 000379 869 QCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHT-GRIYSIVEIVNNSSAESPFDGNTDDDSKTF 947 (1604)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vV~~~~~-~~~Y~v~~i~~d~~p~spf~~~~~~~~~ty 947 (1604)
..|+.+.. .....++..++++++++-... ..-|++.++.+...|.+.|++. .|.|+
T Consensus 684 ------~~~~~~~~--------------~~~~~f~~~~~~~~~~~~rn~~~~~~~~~~v~~~~~pss~~~g~---~~~~~ 740 (1606)
T KOG0701|consen 684 ------PIPSKDEV--------------RKAKYFDGEDSQDAVGMYRNDDQPQFYVAEVLPLLAPSSLFPGL---DYETF 740 (1606)
T ss_pred ------CCCChhhh--------------hhhhhcccccchhhhhhhhcccccceeeeeeeeeccchhcCCCc---chhee
Confidence 11111110 112345666777777772221 2346899999999999999965 79999
Q ss_pred HHHHhhhccccccCCCCceEEeeccCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeCcccceeecccHHHHHHHhh
Q 000379 948 VNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYL 1027 (1604)
Q Consensus 948 ~~yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pel~~~~~ip~~~~~~~~~ 1027 (1604)
..||..+|+..+....||++.++....+.|++.++.+..............++. ...-.-+--.+++.+++.|+.+-+
T Consensus 741 ~~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~~--~~es~~~~~~~h~~~~s~~~~~~~ 818 (1606)
T KOG0701|consen 741 NEVYRFKYALTITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETERL--KDESLEHSLIIHPALASLWRRAVC 818 (1606)
T ss_pred eeeeeccccchhhhccccccccccchhhhcccCchhhccccceeecccchhhhh--hHHHhhccCCCCcCcchhhhhhcc
Confidence 999999999999999999999999999999999985443211100000000000 000011112367889999999999
Q ss_pred cHHHHHHHHHHHhHHHHHH------------HHhc-ccC-----------------------------------------
Q 000379 1028 LPSVMQRLESLMLASQLRE------------EINC-HSR----------------------------------------- 1053 (1604)
Q Consensus 1028 lPsi~~ri~~~l~a~~l~~------------~l~~-~~~----------------------------------------- 1053 (1604)
+|.+++|++.. +...+. .+.. .|.
T Consensus 819 ~p~~v~~v~~t--g~~~s~~ta~~li~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 896 (1606)
T KOG0701|consen 819 LPEILYRVLLT--GALVSLSTAVDLIPHDFSSILSKSFEKEASKSDKNKDEYSCDLALPKENPVKQVLGKANQLDKVNQQ 896 (1606)
T ss_pred Ccchheeeccc--cceeeeecccchhhhhhhhccchhhccccccCCCCccccceeecccCCCchhhhhchhhhhhHHHhh
Confidence 99999988432 111110 0000 000
Q ss_pred --------------------------------------------------------------------------------
Q 000379 1054 -------------------------------------------------------------------------------- 1053 (1604)
Q Consensus 1054 -------------------------------------------------------------------------------- 1053 (1604)
T Consensus 897 av~l~~~~~~~~~~~~~d~~~~n~~~~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~s~~~~n~l~~~~~~~~~~~s~~~~ 976 (1606)
T KOG0701|consen 897 AVELQECIQLHEVGALDDHLVFNKGVADQVLAKRESISLATRPELVSPFIPEPPTTSHLISNRLSPSSPSNSDLNSLLPN 976 (1606)
T ss_pred hhhhhhhhhhhcccccccccccCccccchhhhhccccccccCcccccccccCCchhhhhhhhhcCccCCCCCCccccccc
Confidence
Q ss_pred ------------C----CCCC-------hHHHHHhhccCCCCCCCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHH
Q 000379 1054 ------------N----FHIP-------SSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSA 1110 (1604)
Q Consensus 1054 ------------~----~~~~-------~~lll~AlT~~s~~~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~ 1110 (1604)
| |.+. ..+|+||||+++|.+.++|||||+||||+||++++.+||.+||..+||+|+.
T Consensus 977 ~~~~~E~~e~i~n~~~~Fs~~~~~i~~~~s~LLEAlT~~~~~~s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egqls~ 1056 (1606)
T KOG0701|consen 977 KRSDWEAVEKILNFRYVFSISLASIALSTSLLLEALTTSSCQDSFSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQLSR 1056 (1606)
T ss_pred ccccccccccccccceeccccccccccchhHHHHHhhcCccccchhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhHHH
Confidence 0 0011 3799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchHHHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCc------ccccCCCCccccccccccCCc
Q 000379 1111 RRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDT------LEVPLDGKFFTQDTKVVVGKP 1184 (1604)
Q Consensus 1111 ~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 1184 (1604)
+|+..++|.+|+++|+..||++|++.+.|.|..|..|+.....+.+|+++... .++....+...+....+.+..
T Consensus 1057 lr~~~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e~~~df~e~~~~~~~~~ 1136 (1606)
T KOG0701|consen 1057 LRDVNVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDEKIKDFQEAMEKEDGDS 1136 (1606)
T ss_pred HHHhcccccchhhhhhcccchhhcccccccccccccccccccccccccccccccccccccchhhhhhHHHHhhhccCCcc
Confidence 99999999999999999999999999999998655555566677777775221 111111111111111222333
Q ss_pred cCCC--ccccCCchhHHHHHHHHHHhhhcCChHHHH-----HHHHHhCCcccccchhhhhhhhcccccccCCCHHHHHHH
Q 000379 1185 CDMG--HRWMGSKTIADCAEALIGAYYVGGGLIAAL-----YMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDI 1257 (1604)
Q Consensus 1185 ~~~~--~~~~~~K~lADvvEAliGA~~~~~G~~~a~-----~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1257 (1604)
+..+ +.+...|++||++|||+||+|+|+|...+. ++|+|.++.+++++............+........+..+
T Consensus 1137 ~~~~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~~~~~~~lk~~~~~~dy~~~e~~~~~~~~~~~s~~~~~~~~~~l 1216 (1606)
T KOG0701|consen 1137 RSKGGDHDWLAPKSPADLLEALLGAIYVDGGLLETFETIGDSFLKWSITNYDYDTLEPKHAGKLSFRRSKIVKKKNLDRL 1216 (1606)
T ss_pred cccccccceecCCCHHHHHHHHHHhhhhhccchhhhhHHHHHHHhhhhhhhhhhcccccchhhhhhhhhhHhhhhhHHHH
Confidence 3333 688999999999999999999999998888 999999999988876665444333233333334467899
Q ss_pred HHHhCC--ccCCHHHHHHHHccCCCCC--CCchH----------------HHHHHhcccChHHHHHHHH-----------
Q 000379 1258 ESKIGY--EFTVKFLLQEAITHASVQE--FYCYQ----------------NLYKHLQHCSTLLLSQITE----------- 1306 (1604)
Q Consensus 1258 e~~lgy--~F~~~~LL~~AlTH~S~~~--~~~ye----------------~L~~~~~~~~~~~~~~i~~----------- 1306 (1604)
|..++| +|....++.+|++|+|+.. ..+|| .++..+.....+.++.+..
T Consensus 1217 er~l~~~~~~~~~~l~~~~~~~~s~~~~~ld~~erl~~~~d~vld~l~~~~~~~~~~~~~~~~lt~~~~~~v~~l~e~~~ 1296 (1606)
T KOG0701|consen 1217 ERELGLKFKFLEAALLVQAFIHCSLRAEGLDATERLEFLGDAVLDKLSDKHPFEVFIRLDGGELTDLREAGVNTLNENDL 1296 (1606)
T ss_pred HHhhcccchhhhhhcchhhcccccccccccchHHHHHhhHHHHHHHHHHhhhHhhhhcccCcchhhhhhhhhhhhhhccc
Confidence 999999 9999999999999999986 45577 2233333334333332222
Q ss_pred -------------------------HHHcCCCCCCC-CC---CCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHH
Q 000379 1307 -------------------------YVKSFPKPGET-TD---SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFK 1357 (1604)
Q Consensus 1307 -------------------------~~~~~~~~~~~-~~---~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~ 1357 (1604)
++..+...... ++ .....+.|+.++|+.|+++++..+|.+.++-.+|++..
T Consensus 1297 ~~~v~~~l~~~l~~~s~~~~K~i~d~v~sli~~~~~~~~~~s~l~~~~~~~~l~~i~es~~~~~~~~~~~~l~~~~~~e~ 1376 (1606)
T KOG0701|consen 1297 NVKVPKSLPYNLLDQSSVLEKSIADSVEALIGASLSEGGPSSALLFMDWPPILLDIPESIASPDSIDELRQLLSFGKFEE 1376 (1606)
T ss_pred ccccCCcceeeehhhccCccchHHHHHHHhhhhhhhccCCCccccccccccccccccccccccchhHHHHHHHHHHhhhc
Confidence 22221111100 01 11224668999999999999999999998888999887
Q ss_pred h-----hhccccCCCCCCCCchHHHHHHHHhcCCcceeeeeeeCceEEEEEEEEEcCeEEEEEEEeCCHHHHHHH---HH
Q 000379 1358 P-----ILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGK---AA 1429 (1604)
Q Consensus 1358 ~-----~l~~~i~~~~~~~~p~~~L~e~~~~~~~~~~~~~~~~g~~~~~~v~v~v~g~~~~~~g~g~skk~Ak~~---AA 1429 (1604)
. ..++.+...+...+|.......|.+...+....+...+-..+-...+...+ .|...-...|+.. .|
T Consensus 1377 ~l~y~f~~~~~l~~a~th~s~~~~~~~~C~qrleflgd~vld~~it~hl~~~~~~~s-----p~~~td~rsa~vnn~~~a 1451 (1606)
T KOG0701|consen 1377 KLNYRFKLKPYLTQATTHASYIYNRITDCYQRLEFLGDAVLDYLITKHLYEDPRQHS-----PGVLTDLRSALVNNTIFA 1451 (1606)
T ss_pred ccchhhhhhhcccccccccccccCccchhhhhHHHhHHhhhhhhhhhcccccccccC-----chhhhhhhhHhhccccch
Confidence 7 777777777777788888888887655433211111100000001111111 1222222222222 22
Q ss_pred HHHHHH-hhhhhhh-cccCCCCCCcCCCccccCCCCCCCCCcccccccCccccccCCCccccccccc--CCCcccccccc
Q 000379 1430 SQLLKK-LEVCEKR-ISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMT--VGTPVVAPINM 1505 (1604)
Q Consensus 1430 ~~AL~~-L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 1505 (1604)
..|++. +.++... +.............+.+.+..... ..++-++. ....+...+..
T Consensus 1452 ~~av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~~~~~--------------------~~~edievpKa~gdi~esiag 1511 (1606)
T KOG0701|consen 1452 SLAVKADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSLF--------------------GWEEDIEVPKALGDIFESIAG 1511 (1606)
T ss_pred hhHHhhcchhHHHhhccccccchHHHHHHHHhhccccCC--------------------Cchhhcccchhhhhhhhcccc
Confidence 222222 2221100 000000000111111110000000 00000000 00123444444
Q ss_pred ccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccc---------eeeEEEEEEEecCCceEEEeCCCCC
Q 000379 1506 KKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGF---------SSFVSKITLHIPEFGNVECNGDPRA 1576 (1604)
Q Consensus 1506 ~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~---------~~F~~~v~~~~~~~~~~~~~g~~~s 1576 (1604)
.....++-+.+.|-.+.|++|.+.++++ .++.|.+.+ -.+..++++.+.+.+.+...|....
T Consensus 1512 ai~~dsg~~~~~~~~~~~a~p~~s~~~E---------~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~~~~~~~~~g~~~~ 1582 (1606)
T KOG0701|consen 1512 AIKLDSGNMMEPCIEKFWALPPRSPIRE---------LLELHPERALFGKCEKVADAGKVRVTVDVFNKEVFAGEGRNYR 1582 (1606)
T ss_pred eeecCcccccchHhhcCcCCCCccchhh---------hccccceeeccchhhhhhhccceEEEEEecccchhhhcchhhh
Confidence 5567889999999999999999999998 788886322 1133445554444455555577767
Q ss_pred CccchhhhHHHHHHHHHHHcC
Q 000379 1577 DKKSSFDSAALIMLHELERQG 1597 (1604)
Q Consensus 1577 sKK~A~~~AA~~~l~~l~~~~ 1597 (1604)
++|.|+.+||.+.+..+.+++
T Consensus 1583 ~aK~s~~k~A~~ll~~~~~~~ 1603 (1606)
T KOG0701|consen 1583 IAKASAAKAALKLLKKLGLQK 1603 (1606)
T ss_pred hhhhhHHHHHHHHHHHhhhhh
Confidence 677777777777777666554
No 2
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.5e-53 Score=479.88 Aligned_cols=476 Identities=24% Similarity=0.340 Sum_probs=309.0
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 35 PSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 35 ~~~~~~~~~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
..++..+..+++|.||......++.+|++|++|||.|||+||+++|...+. +.++ ++|||+||++||.|+++.++
T Consensus 5 ~~~~i~p~~ie~R~YQ~~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l~----~~~~-kvlfLAPTKPLV~Qh~~~~~ 79 (542)
T COG1111 5 AHPLIKPNTIEPRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLR----WFGG-KVLFLAPTKPLVLQHAEFCR 79 (542)
T ss_pred hccccccccccHHHHHHHHHHHHhhcCeEEEecCCccHHHHHHHHHHHHHH----hcCC-eEEEecCCchHHHHHHHHHH
Confidence 345667778999999999999999999999999999999999999987765 3344 79999999999999999999
Q ss_pred hhcCC---cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHH
Q 000379 115 VHTDF---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMK 191 (1604)
Q Consensus 115 ~~~~~---~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~ 191 (1604)
+.+++ .+..++|....+. ....|. ..+|+|+|||++.|.+.+|.+++.++.+|||||||+++|+++|..+++
T Consensus 80 ~v~~ip~~~i~~ltGev~p~~-R~~~w~----~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~ 154 (542)
T COG1111 80 KVTGIPEDEIAALTGEVRPEE-REELWA----KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAK 154 (542)
T ss_pred HHhCCChhheeeecCCCChHH-HHHHHh----hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHH
Confidence 99986 5778999887764 445576 789999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeec--cchhhhhhccCCcceeeeeccCCCccccc
Q 000379 192 EFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1604)
Q Consensus 192 ~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~~~~~~~~~ 269 (1604)
+|. .....|+||||||||... .+.+.+...+|+..-..+ .+..++..|+.+.+..-+ ..+
T Consensus 155 ~y~-~~~k~~~ilgLTASPGs~---------~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~i--------kV~ 216 (542)
T COG1111 155 EYL-RSAKNPLILGLTASPGSD---------LEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWI--------KVD 216 (542)
T ss_pred HHH-HhccCceEEEEecCCCCC---------HHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEE--------ecc
Confidence 764 455679999999999865 477888888888743333 244566666654322211 122
Q ss_pred hhhhhhhhhhhhchhHHHHHHhHhhh-hhhhhh--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHH
Q 000379 270 LKGKLEVSWSKFDASLSKLQGSQLNC-YKDMDD--KHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE 346 (1604)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~--~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~ 346 (1604)
+...+......+...+......+... +..... ..+++.... .......... .. ..++....+...+.-...-
T Consensus 217 lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~---~~~~~~a~~~-~~-~~~~~l~~~a~~~kl~~a~ 291 (542)
T COG1111 217 LPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELR---QIRLIMAKNE-DS-DKFRLLSVLAEAIKLAHAL 291 (542)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHH---HHHHHhccCc-cH-HHHHHHHHHHHHHHHHHHH
Confidence 22233322222222222111111110 000000 000000000 0000000000 00 0000000000000000000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCC-------cccccccCCCCHHHHHHHHHHHhh-CCCCCcEEE
Q 000379 347 CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD-------YSKAVDLGYISTKLHELLQLFLSF-GKSTQVLCI 418 (1604)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~K~~~L~~lL~~~-~~~~~~~~I 418 (1604)
.-...+....+..|+++..+...... ......+..+.. ...........||+..+.+++.++ ..+.+.|+|
T Consensus 292 elletqGi~~~~~Yl~~l~e~~~~~~-sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvI 370 (542)
T COG1111 292 ELLETQGIRPFYQYLEKLEEEATKGG-SKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVI 370 (542)
T ss_pred HHHHhhChHHHHHHHHHHHHHhcccc-hHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEE
Confidence 00001111122222222211111100 000000000000 001123445689999999999754 356678999
Q ss_pred EEEchHHHHHHHHHHHhhCCCCCCeeE-EEEEcCCC--CCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccE
Q 000379 419 IFVERIIAAKVVERFVKKVPFLTHLTV-AYLTGSTT--SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSY 495 (1604)
Q Consensus 419 IFv~~r~ta~~L~~~L~~~~~~~~~~~-~~l~G~~~--~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nl 495 (1604)
||++.|.||+.|.++|... +..+ ..+.|.++ +..+|++++|.+++++||.|++|+||||||+|||||||.|++
T Consensus 371 VFT~yRdTae~i~~~L~~~----~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDl 446 (542)
T COG1111 371 VFTEYRDTAEEIVNFLKKI----GIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDL 446 (542)
T ss_pred EEehhHhHHHHHHHHHHhc----CCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccE
Confidence 9999999999999999985 3333 36777653 347899999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHhhhhcccCc-eEEEEEeccCHHHHHHHHHHHHHHHhhhh
Q 000379 496 VIRFDLPKTVSSYIQSRGRARQHNS-QFILMLERGNLKQRNKLFDIIRSERSVTD 549 (1604)
Q Consensus 496 VI~fD~p~s~~syiQr~GRA~R~gs-~~i~~v~~~~~~~~~~l~~~~~~e~~~~~ 549 (1604)
||+||+-.|.+.+|||+||+||..+ ++++++.+++. ++......++++..|.+
T Consensus 447 VifYEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~gtr-deayy~~s~rke~~m~e 500 (542)
T COG1111 447 VIFYEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEGTR-DEAYYYSSRRKEQKMIE 500 (542)
T ss_pred EEEecCCcHHHHHHHhhCccccCCCCeEEEEEecCch-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999864 56777777643 34444455555555543
No 3
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.1e-48 Score=473.61 Aligned_cols=449 Identities=25% Similarity=0.343 Sum_probs=295.2
Q ss_pred CCCCCCCCCCCCCCCCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHH
Q 000379 29 DHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108 (1604)
Q Consensus 29 ~~~~~~~~~~~~~~~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q 108 (1604)
..+.+....+.++..+.+|+||.|+.+.|+++|+||++|||+|||+||+.++.++++ +.++.+|||+|||+.||.|
T Consensus 46 ~~~~s~~~~~~~p~~~~lR~YQ~eivq~ALgkNtii~lPTG~GKTfIAa~Vm~nh~r----w~p~~KiVF~aP~~pLv~Q 121 (746)
T KOG0354|consen 46 SLDESAAQRWIYPTNLELRNYQEELVQPALGKNTIIALPTGSGKTFIAAVIMKNHFE----WRPKGKVVFLAPTRPLVNQ 121 (746)
T ss_pred CCChhhhccccccCcccccHHHHHHhHHhhcCCeEEEeecCCCccchHHHHHHHHHh----cCCcceEEEeeCCchHHHH
Confidence 344444577888999999999999999999999999999999999999999999886 4566789999999999999
Q ss_pred HHHHHHhhc-CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCc-cceeEEEEeCcccccCCChH
Q 000379 109 QYDVIRVHT-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL-DIVCFIVIDECHHATGNHPY 186 (1604)
Q Consensus 109 ~~~~i~~~~-~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l-~~i~llI~DEaH~~~~~~~~ 186 (1604)
|...+...+ +..+....|+.....-..+.| ...+|+|+|||+|.+.|.++...- +.|.+||||||||+.++|+|
T Consensus 122 Q~a~~~~~~~~~~~T~~l~~~~~~~~r~~i~----~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y 197 (746)
T KOG0354|consen 122 QIACFSIYLIPYSVTGQLGDTVPRSNRGEIV----ASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPY 197 (746)
T ss_pred HHHHHhhccCcccceeeccCccCCCchhhhh----cccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccH
Confidence 997777655 455666666643332223334 479999999999999999887655 99999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeec--cchhhhhhccCCcceeeeeccCCC
Q 000379 187 TKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQSK 264 (1604)
Q Consensus 187 ~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~~~~ 264 (1604)
+.||+.|.......+|||||||||.. +..++.+.+..|...|+.+.... ....++.++...|.. ..
T Consensus 198 ~~Vmr~~l~~k~~~~qILgLTASpG~-----~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~-~~------ 265 (746)
T KOG0354|consen 198 NNIMREYLDLKNQGNQILGLTASPGS-----KLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVD-LS------ 265 (746)
T ss_pred HHHHHHHHHhhhccccEEEEecCCCc-----cHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCc-HH------
Confidence 99999887666666799999999983 34567778888887777643322 123344444443322 11
Q ss_pred ccccchhhhhhhhhhhhchhHHHHHHhHhh-----------hhhh------------hhhHHHH-HHHHHHHHHHHHHHH
Q 000379 265 FCGSDLKGKLEVSWSKFDASLSKLQGSQLN-----------CYKD------------MDDKHKT-LRKQLSDYHAKILYC 320 (1604)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~------------~~~~~~~-~~~~l~~~~~~~~~~ 320 (1604)
..+......|...+.++...+.. .|.. .+..-.. +. ...........
T Consensus 266 -------~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~--~~~~~~~~~~l 336 (746)
T KOG0354|consen 266 -------LCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFY--ALHLRKYNLAL 336 (746)
T ss_pred -------HhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHH--HHHHHHHHHHH
Confidence 11111111111111111111110 0000 0000000 00 00000000001
Q ss_pred HHHhhhH--HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHH
Q 000379 321 LDELGLI--CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTK 398 (1604)
Q Consensus 321 ~~~lG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K 398 (1604)
+..-|+. .++.+.....++..... . ...........++......+... .......++|
T Consensus 337 l~~~gir~~~~l~~~~~f~~e~~~~k-~--~~~~~e~~~~~~~~~~m~~~~~l-----------------~~~~~~~npk 396 (746)
T KOG0354|consen 337 LISDGIRFVDALDYLEDFYEEVALKK-Y--LKLELEARLIRNFTENMNELEHL-----------------SLDPPKENPK 396 (746)
T ss_pred HhhcchhhHHHHhhhhhhccccchhH-H--HHHHhcchhhHHHHHHHHhhhhh-----------------hcCCCccChh
Confidence 1111111 11111100000000000 0 00000000001111111111111 1112245899
Q ss_pred HHHHHHHHH-hhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCC--CCCCCHHHHHHHHHHHhCCCc
Q 000379 399 LHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS--VDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 399 ~~~L~~lL~-~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~--~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
+..|.++|. .|...++.|+||||++|..|..|.++|.+. -..++++..+.|.+.+ ..+|++++|++++++||+|++
T Consensus 397 le~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~-~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~ 475 (746)
T KOG0354|consen 397 LEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQL-HELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEI 475 (746)
T ss_pred HHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhh-hhcccccceeeeccccccccccCHHHHHHHHHHHhCCCc
Confidence 999999885 455567889999999999999999999862 2246789999987644 368999999999999999999
Q ss_pred eEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCceEEEEEe
Q 000379 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE 527 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~~i~~v~ 527 (1604)
||||||+|+||||||+.||+||+||...|+..++||+||+|..+|++++++.
T Consensus 476 NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGRgRa~ns~~vll~t 527 (746)
T KOG0354|consen 476 NVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGRGRARNSKCVLLTT 527 (746)
T ss_pred cEEEEecchhccCCcccccEEEEecCCccHHHHHHHhccccccCCeEEEEEc
Confidence 9999999999999999999999999999999999999996666778777777
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-40 Score=392.97 Aligned_cols=345 Identities=21% Similarity=0.306 Sum_probs=265.0
Q ss_pred CCCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHH---HhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQA---IKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~---~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
...-.|.|+|...++.++ +++++..+.||||||+.+++++...+.. ....+..+++|+|+||++|+.|..++++.+
T Consensus 109 ~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 109 QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 345679999999999998 5999999999999999999987766652 123556788999999999999999999887
Q ss_pred c---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHH
Q 000379 117 T---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193 (1604)
Q Consensus 117 ~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~ 193 (1604)
. +++..+++|+.....+ ...+..+.+|+|+||++|++++..+.+.++++.++|+|||+++.+. .+...++.+
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q----~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldm-GFe~qI~~I 263 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQ----LRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDM-GFEPQIRKI 263 (519)
T ss_pred cCCCCccEEEEeCCCCccHH----HHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhcc-ccHHHHHHH
Confidence 5 5679999999876553 2344557999999999999999999999999999999999999875 466666766
Q ss_pred HhhcCCCC-cEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhh
Q 000379 194 YHKSDNKP-KVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1604)
Q Consensus 194 ~~~~~~~p-~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~ 272 (1604)
....++.. +.+..|||=. ..++.|-.. |...|....+-+..
T Consensus 264 l~~i~~~~rQtlm~saTwp------------~~v~~lA~~----------------fl~~~~~i~ig~~~---------- 305 (519)
T KOG0331|consen 264 LSQIPRPDRQTLMFSATWP------------KEVRQLAED----------------FLNNPIQINVGNKK---------- 305 (519)
T ss_pred HHhcCCCcccEEEEeeecc------------HHHHHHHHH----------------HhcCceEEEecchh----------
Confidence 66664444 5899999922 112222221 11111111110000
Q ss_pred hhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000379 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1604)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1604)
. +.
T Consensus 306 --------------------------------~----~~----------------------------------------- 308 (519)
T KOG0331|consen 306 --------------------------------E----LK----------------------------------------- 308 (519)
T ss_pred --------------------------------h----hh-----------------------------------------
Confidence 0 00
Q ss_pred hhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHH
Q 000379 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1604)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~ 432 (1604)
...-+..+.. .+ ....|...|..+|..+......|+||||+++.+|+.|.+
T Consensus 309 ----a~~~i~qive----~~---------------------~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~ 359 (519)
T KOG0331|consen 309 ----ANHNIRQIVE----VC---------------------DETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELAR 359 (519)
T ss_pred ----hhcchhhhhh----hc---------------------CHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHH
Confidence 0000000000 00 124678888888888766677899999999999999999
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHh
Q 000379 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512 (1604)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~ 512 (1604)
.|.. .++.+..+||+ .++.+|..+|+.||+|+++|||||+|+++|||||++++||+||+|.+..+|+||.
T Consensus 360 ~l~~----~~~~a~~iHGd------~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRi 429 (519)
T KOG0331|consen 360 NLRR----KGWPAVAIHGD------KSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRI 429 (519)
T ss_pred HHHh----cCcceeeeccc------ccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhc
Confidence 9987 36899999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCce--EEEEEeccCHHHHHHHHHHHHHH
Q 000379 513 GRARQHNSQ--FILMLERGNLKQRNKLFDIIRSE 544 (1604)
Q Consensus 513 GRA~R~gs~--~i~~v~~~~~~~~~~l~~~~~~e 544 (1604)
||+||+|.+ .+.|+...+......+.+++++.
T Consensus 430 GRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~ 463 (519)
T KOG0331|consen 430 GRTGRAGKKGTAITFFTSDNAKLARELIKVLREA 463 (519)
T ss_pred CccccCCCCceEEEEEeHHHHHHHHHHHHHHHHc
Confidence 999998764 67777777777777777666543
No 5
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-39 Score=356.26 Aligned_cols=334 Identities=20% Similarity=0.288 Sum_probs=266.8
Q ss_pred CCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh---cC
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---TD 118 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---~~ 118 (1604)
...|.+.|.++++.+++ +++|+.+.||||||.+++++|.+.+- ..+....++||+||++|+.|+++.+... +|
T Consensus 81 ~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL---~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig 157 (476)
T KOG0330|consen 81 WKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLL---QEPKLFFALVLTPTRELAQQIAEQFEALGSGIG 157 (476)
T ss_pred cCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHH---cCCCCceEEEecCcHHHHHHHHHHHHHhccccC
Confidence 56799999999999985 99999999999999999998877553 2445578999999999999999999876 58
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHH-hcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR-KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~-~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
+++..+.||++.... -......++|+|+||+.|.+++. .+.+++.++.++|+|||+++.+. .|...+..++...
T Consensus 158 lr~~~lvGG~~m~~q----~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~-dF~~~ld~ILk~i 232 (476)
T KOG0330|consen 158 LRVAVLVGGMDMMLQ----ANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDM-DFEEELDYILKVI 232 (476)
T ss_pred eEEEEEecCchHHHH----HHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhh-hhHHHHHHHHHhc
Confidence 999999999875432 24456789999999999999998 56789999999999999999876 7888888888777
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhh-cCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELEST-LDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~-l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~ 276 (1604)
+...+.+++|||...+ +.+|... ++ .|.....
T Consensus 233 p~erqt~LfsATMt~k------------v~kL~rasl~-----------------~p~~v~~------------------ 265 (476)
T KOG0330|consen 233 PRERQTFLFSATMTKK------------VRKLQRASLD-----------------NPVKVAV------------------ 265 (476)
T ss_pred CccceEEEEEeecchh------------hHHHHhhccC-----------------CCeEEec------------------
Confidence 8888999999996432 3444421 11 1111100
Q ss_pred hhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000379 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1604)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1604)
.+.|..++. +
T Consensus 266 ----------------s~ky~tv~~--------l---------------------------------------------- 275 (476)
T KOG0330|consen 266 ----------------SSKYQTVDH--------L---------------------------------------------- 275 (476)
T ss_pred ----------------cchhcchHH--------h----------------------------------------------
Confidence 000000000 0
Q ss_pred HHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
.+.|+ .+ ....|...|+.+|+.... ...||||++-.++..+.-+|..
T Consensus 276 kQ~yl---------fv---------------------~~k~K~~yLV~ll~e~~g---~s~iVF~~t~~tt~~la~~L~~ 322 (476)
T KOG0330|consen 276 KQTYL---------FV---------------------PGKDKDTYLVYLLNELAG---NSVIVFCNTCNTTRFLALLLRN 322 (476)
T ss_pred hhheE---------ec---------------------cccccchhHHHHHHhhcC---CcEEEEEeccchHHHHHHHHHh
Confidence 00000 00 013467788888886543 4789999999999999999988
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
+ ++.+..+||. |++..|...+++|++|.++|||||+|+++|+|+|.+++|||||.|.+..+||||+||++
T Consensus 323 l----g~~a~~LhGq------msq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRta 392 (476)
T KOG0330|consen 323 L----GFQAIPLHGQ------MSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTA 392 (476)
T ss_pred c----Ccceecccch------hhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHccccc
Confidence 5 7889999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCc--eEEEEEeccCHHHHHHHHHHHHHH
Q 000379 517 QHNS--QFILMLERGNLKQRNKLFDIIRSE 544 (1604)
Q Consensus 517 R~gs--~~i~~v~~~~~~~~~~l~~~~~~e 544 (1604)
|.|. +.|.+++.-+.+...++|..++++
T Consensus 393 RaGrsG~~ItlVtqyDve~~qrIE~~~gkk 422 (476)
T KOG0330|consen 393 RAGRSGKAITLVTQYDVELVQRIEHALGKK 422 (476)
T ss_pred ccCCCcceEEEEehhhhHHHHHHHHHHhcC
Confidence 9994 589999988888888888877653
No 6
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.8e-37 Score=412.63 Aligned_cols=458 Identities=24% Similarity=0.351 Sum_probs=284.5
Q ss_pred CCCCCCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 39 TNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 39 ~~~~~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
..+..++||+||.+++..++++|+|+++|||+|||++|++++.+++. .+++++|||+||++|+.||.+.++++++
T Consensus 9 ~~~~~~~~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~~~l~-----~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 9 IKPNTIEARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIAERLH-----KKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred cCcCcCCccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHHHHHH-----hCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 34456899999999999999999999999999999999999888764 2456799999999999999999999887
Q ss_pred C---cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHh
Q 000379 119 F---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1604)
Q Consensus 119 ~---~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~ 195 (1604)
. ++..++|+...+. +.....+++|+|+||+++.+.+..+.+.+.++++||||||||+.+++.+..++..|..
T Consensus 84 ~~~~~v~~~~g~~~~~~-----r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~ 158 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEK-----RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHE 158 (773)
T ss_pred CCCceEEEEeCCCCHHH-----HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHh
Confidence 6 7888888765432 2233347899999999999999889999999999999999999999999999887654
Q ss_pred hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeec--cchhhhhhccCCcceeeeeccCCCccccchhhh
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~ 273 (1604)
....|+++||||||..+ .+.+..+...|+...... .....+..+...+........ +...
T Consensus 159 -~~~~~~il~lTaTP~~~---------~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~--------l~~~ 220 (773)
T PRK13766 159 -DAKNPLVLGLTASPGSD---------EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVE--------LPEE 220 (773)
T ss_pred -cCCCCEEEEEEcCCCCC---------HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeC--------CcHH
Confidence 34578999999999754 345666666666543322 233445555554322222111 1111
Q ss_pred hhhhhhhhchhHHHHHHhHhhhh-h-hhh--hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH-
Q 000379 274 LEVSWSKFDASLSKLQGSQLNCY-K-DMD--DKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE- 348 (1604)
Q Consensus 274 ~~~~~~~~~~~~~~l~~~~~~~~-~-~~~--~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~- 348 (1604)
+......+...+......+...- . ... .....+ ......+...+..... ..+........ +........
T Consensus 221 ~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l----~~~~~~~~~~l~~~~~-~~~~~~~~~~~-~~~l~~~~~~ 294 (773)
T PRK13766 221 LKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKEL----LGLQKKLQQEIANDDS-EGYEAISILAE-AMKLRHAVEL 294 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHH----HHHHHHHHHHhhcCch-HHHHHHHHHHH-HHHHHHHHHH
Confidence 11111111111111111110000 0 000 000000 0000000000000000 00000000000 000000000
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhc-Cccchhhcccc-C--CcccccccCCCCHHHHHHHHHHHhhC-CCCCcEEEEEEch
Q 000379 349 IYRQSSLQCKYFLEEVLHVIGSAL-PLADKIFLDFG-F--DYSKAVDLGYISTKLHELLQLFLSFG-KSTQVLCIIFVER 423 (1604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~-~--~~~~~~~~~~~s~K~~~L~~lL~~~~-~~~~~~~IIFv~~ 423 (1604)
...........|+........... ......+.... . ...........++|+..|.++|.... ..++.++||||++
T Consensus 295 l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~ 374 (773)
T PRK13766 295 LETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQY 374 (773)
T ss_pred HHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 000000111111111111000000 00000000000 0 00000011234799999999997643 2456799999999
Q ss_pred HHHHHHHHHHHhhCCCCCCeeEEEEEcCCCC--CCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCC
Q 000379 424 IIAAKVVERFVKKVPFLTHLTVAYLTGSTTS--VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501 (1604)
Q Consensus 424 r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~--~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~ 501 (1604)
+.++..|.+.|.. .++.+..++|.+.. ..+|++.+|.+++++|++|++++||||++++||+|+|+|++||+||+
T Consensus 375 ~~t~~~L~~~L~~----~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~ 450 (773)
T PRK13766 375 RDTAEKIVDLLEK----EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEP 450 (773)
T ss_pred HHHHHHHHHHHHh----CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCC
Confidence 9999999999976 46778889987432 24689999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhhhcccCc-eEEEEEeccCHHHH
Q 000379 502 PKTVSSYIQSRGRARQHNS-QFILMLERGNLKQR 534 (1604)
Q Consensus 502 p~s~~syiQr~GRA~R~gs-~~i~~v~~~~~~~~ 534 (1604)
|++...|+||+||+||.|. ++++|+..++.++.
T Consensus 451 ~~s~~r~iQR~GR~gR~~~~~v~~l~~~~t~ee~ 484 (773)
T PRK13766 451 VPSEIRSIQRKGRTGRQEEGRVVVLIAKGTRDEA 484 (773)
T ss_pred CCCHHHHHHHhcccCcCCCCEEEEEEeCCChHHH
Confidence 9999999999999999774 57777777766553
No 7
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=7.6e-38 Score=394.04 Aligned_cols=341 Identities=20% Similarity=0.259 Sum_probs=251.7
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHH--hhCCCCeEEEEEecChhhHHHHHHHHHhhc--
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAI--KSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-- 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~--~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~-- 117 (1604)
..+|+++|.++++.++ ++|+|+++|||||||+++++++...+... ...+.++.+|||+||++|+.|+.++++.+.
T Consensus 150 ~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~ 229 (545)
T PTZ00110 150 FTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGAS 229 (545)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcc
Confidence 3469999999999998 59999999999999999999765544311 122346789999999999999999998864
Q ss_pred -CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhh
Q 000379 118 -DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 118 -~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
++++..++|+.... ..+......++|+|+||++|++++.++...+.++++||+||||++... .+...+..+...
T Consensus 230 ~~i~~~~~~gg~~~~----~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~-gf~~~i~~il~~ 304 (545)
T PTZ00110 230 SKIRNTVAYGGVPKR----GQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVSQ 304 (545)
T ss_pred cCccEEEEeCCCCHH----HHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhc-chHHHHHHHHHh
Confidence 57888888876533 234445568999999999999999999999999999999999999865 455555555555
Q ss_pred cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhh
Q 000379 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~ 276 (1604)
.....+++++|||... .+..+...+-. ..|.... ........
T Consensus 305 ~~~~~q~l~~SAT~p~------------~v~~l~~~l~~---------------~~~v~i~--vg~~~l~~--------- 346 (545)
T PTZ00110 305 IRPDRQTLMWSATWPK------------EVQSLARDLCK---------------EEPVHVN--VGSLDLTA--------- 346 (545)
T ss_pred CCCCCeEEEEEeCCCH------------HHHHHHHHHhc---------------cCCEEEE--ECCCcccc---------
Confidence 5667899999999531 12222221100 0000000 00000000
Q ss_pred hhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000379 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1604)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1604)
T Consensus 347 -------------------------------------------------------------------------------- 346 (545)
T PTZ00110 347 -------------------------------------------------------------------------------- 346 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
...+... + .......|...|.+++.... ....++||||+++.+|+.|++.|..
T Consensus 347 --------~~~i~q~-------~-----------~~~~~~~k~~~L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~ 399 (545)
T PTZ00110 347 --------CHNIKQE-------V-----------FVVEEHEKRGKLKMLLQRIM-RDGDKILIFVETKKGADFLTKELRL 399 (545)
T ss_pred --------CCCeeEE-------E-----------EEEechhHHHHHHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHH
Confidence 0000000 0 00001235555556665443 1456999999999999999999986
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
.++.+..+||+ |++.+|.+++++|++|+++|||||+++++|||||+|++||+||+|.+..+|+||+||+|
T Consensus 400 ----~g~~~~~ihg~------~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtG 469 (545)
T PTZ00110 400 ----DGWPALCIHGD------KKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTG 469 (545)
T ss_pred ----cCCcEEEEECC------CcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccc
Confidence 46788999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCce--EEEEEeccCHHHHHHHHHHHHH
Q 000379 517 QHNSQ--FILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 517 R~gs~--~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
|.|.+ +++|++..+......+.+.++.
T Consensus 470 R~G~~G~ai~~~~~~~~~~~~~l~~~l~~ 498 (545)
T PTZ00110 470 RAGAKGASYTFLTPDKYRLARDLVKVLRE 498 (545)
T ss_pred cCCCCceEEEEECcchHHHHHHHHHHHHH
Confidence 99864 7888888777766777766654
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.4e-37 Score=387.51 Aligned_cols=339 Identities=22% Similarity=0.317 Sum_probs=245.4
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHh----hCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIK----SNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~----~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
...|+++|.++++.++ ++|+|+++|||||||++|++++...+.... ....+.++|||+||++|+.|+.+.++.+.
T Consensus 141 ~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~ 220 (518)
T PLN00206 141 YEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLG 220 (518)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 3579999999999998 589999999999999999998766543221 12246789999999999999988877653
Q ss_pred ---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHH
Q 000379 118 ---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1604)
Q Consensus 118 ---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~ 194 (1604)
++++..++|+..... .......+++|+|+||++|.+++.++.+.++++.+|||||||++.+.. +...+...+
T Consensus 221 ~~~~~~~~~~~gG~~~~~----q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~g-f~~~i~~i~ 295 (518)
T PLN00206 221 KGLPFKTALVVGGDAMPQ----QLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERG-FRDQVMQIF 295 (518)
T ss_pred CCCCceEEEEECCcchHH----HHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcc-hHHHHHHHH
Confidence 577888888765432 122344578999999999999999989999999999999999998753 443333333
Q ss_pred hhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhh
Q 000379 195 HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274 (1604)
Q Consensus 195 ~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~ 274 (1604)
... +.++++++|||... .+..+...+........ ..........+
T Consensus 296 ~~l-~~~q~l~~SATl~~------------~v~~l~~~~~~~~~~i~------------------~~~~~~~~~~v---- 340 (518)
T PLN00206 296 QAL-SQPQVLLFSATVSP------------EVEKFASSLAKDIILIS------------------IGNPNRPNKAV---- 340 (518)
T ss_pred HhC-CCCcEEEEEeeCCH------------HHHHHHHHhCCCCEEEE------------------eCCCCCCCcce----
Confidence 333 46899999999642 23333332221110000 00000000000
Q ss_pred hhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 000379 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354 (1604)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1604)
.
T Consensus 341 ~------------------------------------------------------------------------------- 341 (518)
T PLN00206 341 K------------------------------------------------------------------------------- 341 (518)
T ss_pred e-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHH
Q 000379 355 LQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434 (1604)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L 434 (1604)
.. . .......|...|.+++.... ....++||||+++..++.|++.|
T Consensus 342 ---------------q~-------~-----------~~~~~~~k~~~l~~~l~~~~-~~~~~~iVFv~s~~~a~~l~~~L 387 (518)
T PLN00206 342 ---------------QL-------A-----------IWVETKQKKQKLFDILKSKQ-HFKPPAVVFVSSRLGADLLANAI 387 (518)
T ss_pred ---------------EE-------E-----------EeccchhHHHHHHHHHHhhc-ccCCCEEEEcCCchhHHHHHHHH
Confidence 00 0 00000123344455554322 12247999999999999999998
Q ss_pred hhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhh
Q 000379 435 KKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514 (1604)
Q Consensus 435 ~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GR 514 (1604)
... .++++..+||. |++++|.+++++|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+||
T Consensus 388 ~~~---~g~~~~~~Hg~------~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGR 458 (518)
T PLN00206 388 TVV---TGLKALSIHGE------KSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGR 458 (518)
T ss_pred hhc---cCcceEEeeCC------CCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccc
Confidence 753 46788999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCc--eEEEEEeccCHHHHHHHHHHHHH
Q 000379 515 ARQHNS--QFILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 515 A~R~gs--~~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
|||.|. .+++|+..++......+.+.++.
T Consensus 459 aGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~ 489 (518)
T PLN00206 459 ASRMGEKGTAIVFVNEEDRNLFPELVALLKS 489 (518)
T ss_pred cccCCCCeEEEEEEchhHHHHHHHHHHHHHH
Confidence 999985 47888887766666666666554
No 9
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.8e-37 Score=380.85 Aligned_cols=334 Identities=20% Similarity=0.233 Sum_probs=243.9
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhh----CCCCeEEEEEecChhhHHHHHHHHHhh-
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKS----NGFKKLIIFLAPTVHLVHQQYDVIRVH- 116 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~----~~~~~~vl~LvPt~~Lv~Q~~~~i~~~- 116 (1604)
...|+++|.++++.++ ++|+|+++|||||||+++++++.+.+..... ...+.++|||+||++|+.|+++.+...
T Consensus 28 ~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~ 107 (423)
T PRK04837 28 FHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLA 107 (423)
T ss_pred CCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHh
Confidence 4578999999999987 5899999999999999999988776542211 123467999999999999998887764
Q ss_pred --cCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHH
Q 000379 117 --TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1604)
Q Consensus 117 --~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~ 194 (1604)
+++++..++|+.+.+. .+.....+++|+|+||++|.+.+.++.+.++++++||+||||++... .+...+..++
T Consensus 108 ~~~~~~v~~~~gg~~~~~----~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~-~f~~~i~~i~ 182 (423)
T PRK04837 108 QATGLKLGLAYGGDGYDK----QLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDL-GFIKDIRWLF 182 (423)
T ss_pred ccCCceEEEEECCCCHHH----HHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhc-ccHHHHHHHH
Confidence 4789999999876443 23333457899999999999999999999999999999999999765 4555555555
Q ss_pred hhcCC--CCcEEEEeccCCCCCCCCCcccHHHHHHHHH-hhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchh
Q 000379 195 HKSDN--KPKVFGMTASPVVRKGVSSAMDCEGQISELE-STLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLK 271 (1604)
Q Consensus 195 ~~~~~--~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le-~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~ 271 (1604)
...+. ..+.+++|||.... +..+. ..++. |....+ .+.......
T Consensus 183 ~~~~~~~~~~~~l~SAT~~~~------------~~~~~~~~~~~-----------------p~~i~v--~~~~~~~~~-- 229 (423)
T PRK04837 183 RRMPPANQRLNMLFSATLSYR------------VRELAFEHMNN-----------------PEYVEV--EPEQKTGHR-- 229 (423)
T ss_pred HhCCCccceeEEEEeccCCHH------------HHHHHHHHCCC-----------------CEEEEE--cCCCcCCCc--
Confidence 44432 23468999996421 11111 11211 110000 000000000
Q ss_pred hhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000379 272 GKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351 (1604)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1604)
T Consensus 230 -------------------------------------------------------------------------------- 229 (423)
T PRK04837 230 -------------------------------------------------------------------------------- 229 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHH
Q 000379 352 QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE 431 (1604)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~ 431 (1604)
+... ........|...|..++... ...++||||+++..++.++
T Consensus 230 ----------------i~~~------------------~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~ 272 (423)
T PRK04837 230 ----------------IKEE------------------LFYPSNEEKMRLLQTLIEEE---WPDRAIIFANTKHRCEEIW 272 (423)
T ss_pred ----------------eeEE------------------EEeCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHH
Confidence 0000 00000123555555555442 2358999999999999999
Q ss_pred HHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHH
Q 000379 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511 (1604)
Q Consensus 432 ~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr 511 (1604)
+.|.. .++.+..+||+ |++++|.+++++|++|+++|||||+++++|||+|+|++||+||+|.+..+|+||
T Consensus 273 ~~L~~----~g~~v~~lhg~------~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR 342 (423)
T PRK04837 273 GHLAA----DGHRVGLLTGD------VAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHR 342 (423)
T ss_pred HHHHh----CCCcEEEecCC------CChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEec
Confidence 99987 47889999998 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCce--EEEEEeccCHHHHHHHHHHH
Q 000379 512 RGRARQHNSQ--FILMLERGNLKQRNKLFDII 541 (1604)
Q Consensus 512 ~GRA~R~gs~--~i~~v~~~~~~~~~~l~~~~ 541 (1604)
+||+||.|.. .+.|+.+.+......+++.+
T Consensus 343 ~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~ 374 (423)
T PRK04837 343 IGRTGRAGASGHSISLACEEYALNLPAIETYI 374 (423)
T ss_pred cccccCCCCCeeEEEEeCHHHHHHHHHHHHHh
Confidence 9999999964 77787765554445454433
No 10
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.3e-37 Score=381.64 Aligned_cols=335 Identities=19% Similarity=0.212 Sum_probs=242.5
Q ss_pred CCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhh---CCCCeEEEEEecChhhHHHHHHHHHhhc-
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKS---NGFKKLIIFLAPTVHLVHQQYDVIRVHT- 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~---~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~- 117 (1604)
...|+++|.++++.++. +|+|+.+|||+|||+++++++.+.+..... .....++|||+||++|+.|+.+.++.+.
T Consensus 21 ~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~ 100 (456)
T PRK10590 21 YREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK 100 (456)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhc
Confidence 34799999999999985 999999999999999999988776642111 1123479999999999999999998754
Q ss_pred --CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHh
Q 000379 118 --DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1604)
Q Consensus 118 --~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~ 195 (1604)
++++..++|+.+.+. .+......++|+|+||+.|++.+.+..+.++++++||+||||++.... +...+...+.
T Consensus 101 ~~~~~~~~~~gg~~~~~----~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~-~~~~i~~il~ 175 (456)
T PRK10590 101 YLNIRSLVVFGGVSINP----QMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMG-FIHDIRRVLA 175 (456)
T ss_pred cCCCEEEEEECCcCHHH----HHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccc-cHHHHHHHHH
Confidence 678888999876443 234445678999999999999999988999999999999999998653 3333444444
Q ss_pred hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
..+...+++++|||+.. .+..+...+. ..|....+....... .. +.
T Consensus 176 ~l~~~~q~l~~SAT~~~------------~~~~l~~~~~----------------~~~~~i~~~~~~~~~--~~----i~ 221 (456)
T PRK10590 176 KLPAKRQNLLFSATFSD------------DIKALAEKLL----------------HNPLEIEVARRNTAS--EQ----VT 221 (456)
T ss_pred hCCccCeEEEEeCCCcH------------HHHHHHHHHc----------------CCCeEEEEecccccc--cc----ee
Confidence 55666789999999642 2233322211 111110000000000 00 00
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
. .+...
T Consensus 222 ~------------------~~~~~-------------------------------------------------------- 227 (456)
T PRK10590 222 Q------------------HVHFV-------------------------------------------------------- 227 (456)
T ss_pred E------------------EEEEc--------------------------------------------------------
Confidence 0 00000
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
....|...|..++.. ....++||||+++..++.|++.|.
T Consensus 228 --------------------------------------~~~~k~~~l~~l~~~---~~~~~~lVF~~t~~~~~~l~~~L~ 266 (456)
T PRK10590 228 --------------------------------------DKKRKRELLSQMIGK---GNWQQVLVFTRTKHGANHLAEQLN 266 (456)
T ss_pred --------------------------------------CHHHHHHHHHHHHHc---CCCCcEEEEcCcHHHHHHHHHHHH
Confidence 001122222222322 223579999999999999999998
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhh
Q 000379 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1604)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA 515 (1604)
. .++.+..+||. |++++|.+++++|++|+++|||||+++++|||+|++++||+||+|.++.+|+||+|||
T Consensus 267 ~----~g~~~~~lhg~------~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRa 336 (456)
T PRK10590 267 K----DGIRSAAIHGN------KSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRT 336 (456)
T ss_pred H----CCCCEEEEECC------CCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhcccc
Confidence 7 46889999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCce--EEEEEeccCHHHHHHHHHHH
Q 000379 516 RQHNSQ--FILMLERGNLKQRNKLFDII 541 (1604)
Q Consensus 516 ~R~gs~--~i~~v~~~~~~~~~~l~~~~ 541 (1604)
||.|.. .++|+...+....+.+++.+
T Consensus 337 GR~g~~G~ai~l~~~~d~~~~~~ie~~l 364 (456)
T PRK10590 337 GRAAATGEALSLVCVDEHKLLRDIEKLL 364 (456)
T ss_pred ccCCCCeeEEEEecHHHHHHHHHHHHHh
Confidence 999864 67777765555445555443
No 11
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=7.1e-37 Score=382.65 Aligned_cols=329 Identities=19% Similarity=0.256 Sum_probs=246.6
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc----
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---- 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---- 117 (1604)
.-+|+++|.++++.++ ++|+|+++|||+|||+++++++.+.+. ......+++||+||++|+.|++++++.+.
T Consensus 24 ~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~---~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 24 YTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLD---VKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhh---hccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 3468999999999997 489999999999999999998887664 22234569999999999999999998753
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
++++..++|+.+.+.. +.....+++|+|+||++|.+.+.++.+.++++++|||||||++... .|...+...+...
T Consensus 101 ~~~v~~~~Gg~~~~~~----~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~-g~~~~l~~i~~~~ 175 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQ----IDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDM-GFQDAIDAIIRQA 175 (460)
T ss_pred CcEEEEEECCCChHHH----HHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCc-CcHHHHHHHHHhC
Confidence 6889999998765432 2333467899999999999999999999999999999999999765 4555555566566
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~ 277 (1604)
+...+++++|||+.. .+..+...+. ..|......-. ... .. +
T Consensus 176 ~~~~q~ll~SAT~~~------------~~~~l~~~~~----------------~~~~~i~~~~~-~~~--~~----i--- 217 (460)
T PRK11776 176 PARRQTLLFSATYPE------------GIAAISQRFQ----------------RDPVEVKVEST-HDL--PA----I--- 217 (460)
T ss_pred CcccEEEEEEecCcH------------HHHHHHHHhc----------------CCCEEEEECcC-CCC--CC----e---
Confidence 677889999999742 1222222211 11111000000 000 00 0
Q ss_pred hhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000379 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1604)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1604)
T Consensus 218 -------------------------------------------------------------------------------- 217 (460)
T PRK11776 218 -------------------------------------------------------------------------------- 217 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC
Q 000379 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1604)
Q Consensus 358 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~ 437 (1604)
... .. ......|...|..++.... ..++||||+++..++.+++.|..
T Consensus 218 -----------~~~-------~~-----------~~~~~~k~~~l~~ll~~~~---~~~~lVF~~t~~~~~~l~~~L~~- 264 (460)
T PRK11776 218 -----------EQR-------FY-----------EVSPDERLPALQRLLLHHQ---PESCVVFCNTKKECQEVADALNA- 264 (460)
T ss_pred -----------eEE-------EE-----------EeCcHHHHHHHHHHHHhcC---CCceEEEECCHHHHHHHHHHHHh-
Confidence 000 00 0001235556666665432 34799999999999999999987
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcc
Q 000379 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517 (1604)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R 517 (1604)
.++.+..+||+ |++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+||+||
T Consensus 265 ---~~~~v~~~hg~------~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR 335 (460)
T PRK11776 265 ---QGFSALALHGD------LEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGR 335 (460)
T ss_pred ---CCCcEEEEeCC------CCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccC
Confidence 47889999998 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCce--EEEEEeccCHHHHHHHHH
Q 000379 518 HNSQ--FILMLERGNLKQRNKLFD 539 (1604)
Q Consensus 518 ~gs~--~i~~v~~~~~~~~~~l~~ 539 (1604)
.|+. .+.|+.+.+....+.+++
T Consensus 336 ~g~~G~ai~l~~~~e~~~~~~i~~ 359 (460)
T PRK11776 336 AGSKGLALSLVAPEEMQRANAIED 359 (460)
T ss_pred CCCcceEEEEEchhHHHHHHHHHH
Confidence 9864 677777654443333433
No 12
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.6e-37 Score=380.71 Aligned_cols=335 Identities=19% Similarity=0.258 Sum_probs=246.3
Q ss_pred CCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHh-hCCCCeEEEEEecChhhHHHHHHHHHhh---c
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIK-SNGFKKLIIFLAPTVHLVHQQYDVIRVH---T 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~-~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---~ 117 (1604)
..+|+++|.++++.+++ +|+|+++|||+|||+++++++.+.+.... ......++|||+||++|+.|+++.++.+ +
T Consensus 21 ~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~ 100 (434)
T PRK11192 21 YTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHT 100 (434)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccC
Confidence 35689999999999985 89999999999999999998776654221 1223467999999999999998887764 5
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
++++..++|+.....+ ......+++|+|+||++|++.+.++.+.+.++++|||||||++... .+...+..+....
T Consensus 101 ~~~v~~~~gg~~~~~~----~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~-~~~~~~~~i~~~~ 175 (434)
T PRK11192 101 HLDIATITGGVAYMNH----AEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDM-GFAQDIETIAAET 175 (434)
T ss_pred CcEEEEEECCCCHHHH----HHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCC-CcHHHHHHHHHhC
Confidence 7899999998765432 2223457899999999999999999889999999999999999764 4566666665556
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~ 277 (1604)
....+++++|||+... .+..+...+.. .|..... .+......
T Consensus 176 ~~~~q~~~~SAT~~~~-----------~~~~~~~~~~~----------------~~~~i~~--~~~~~~~~--------- 217 (434)
T PRK11192 176 RWRKQTLLFSATLEGD-----------AVQDFAERLLN----------------DPVEVEA--EPSRRERK--------- 217 (434)
T ss_pred ccccEEEEEEeecCHH-----------HHHHHHHHHcc----------------CCEEEEe--cCCccccc---------
Confidence 6678999999997421 12222222110 0100000 00000000
Q ss_pred hhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000379 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1604)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1604)
T Consensus 218 -------------------------------------------------------------------------------- 217 (434)
T PRK11192 218 -------------------------------------------------------------------------------- 217 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC
Q 000379 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1604)
Q Consensus 358 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~ 437 (1604)
.+..... .......|...|..++.. ....++||||+++.++..|+..|..
T Consensus 218 ---------~i~~~~~-----------------~~~~~~~k~~~l~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~- 267 (434)
T PRK11192 218 ---------KIHQWYY-----------------RADDLEHKTALLCHLLKQ---PEVTRSIVFVRTRERVHELAGWLRK- 267 (434)
T ss_pred ---------CceEEEE-----------------EeCCHHHHHHHHHHHHhc---CCCCeEEEEeCChHHHHHHHHHHHh-
Confidence 0000000 000012344555555543 2346899999999999999999987
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcc
Q 000379 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517 (1604)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R 517 (1604)
.++.+..+||. |++.+|..++++|++|+++|||||+++++|||+|++++||+||+|.+...|+||+||+||
T Consensus 268 ---~~~~~~~l~g~------~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR 338 (434)
T PRK11192 268 ---AGINCCYLEGE------MVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGR 338 (434)
T ss_pred ---CCCCEEEecCC------CCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhccccccc
Confidence 46889999998 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCce--EEEEEeccCHHHHHHHHH
Q 000379 518 HNSQ--FILMLERGNLKQRNKLFD 539 (1604)
Q Consensus 518 ~gs~--~i~~v~~~~~~~~~~l~~ 539 (1604)
.|.+ .++|++..+......+++
T Consensus 339 ~g~~g~ai~l~~~~d~~~~~~i~~ 362 (434)
T PRK11192 339 AGRKGTAISLVEAHDHLLLGKIER 362 (434)
T ss_pred CCCCceEEEEecHHHHHHHHHHHH
Confidence 9865 677777655554444443
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.3e-36 Score=383.03 Aligned_cols=330 Identities=20% Similarity=0.262 Sum_probs=244.8
Q ss_pred CCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc----
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---- 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---- 117 (1604)
..+|+++|.++++.+++ +++|+.+|||+|||+++++++.+.+. ......++||||||++|+.|+++++..+.
T Consensus 26 ~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~---~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 26 YEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhh---hccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 34799999999999985 89999999999999999998876654 22344579999999999999999988753
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
++.+..++|+...+.| .......++|||+||+.|++.+.++.+.++++.+||+||||++... .+...+..+....
T Consensus 103 ~i~v~~~~gG~~~~~q----~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~-gf~~di~~Il~~l 177 (629)
T PRK11634 103 GVNVVALYGGQRYDVQ----LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM-GFIEDVETIMAQI 177 (629)
T ss_pred CceEEEEECCcCHHHH----HHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhc-ccHHHHHHHHHhC
Confidence 6888999998754432 2233357899999999999999999999999999999999999765 3444444444455
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~ 277 (1604)
+...+++++|||.... +..+... +...|....+....... .
T Consensus 178 p~~~q~llfSAT~p~~------------i~~i~~~----------------~l~~~~~i~i~~~~~~~--~--------- 218 (629)
T PRK11634 178 PEGHQTALFSATMPEA------------IRRITRR----------------FMKEPQEVRIQSSVTTR--P--------- 218 (629)
T ss_pred CCCCeEEEEEccCChh------------HHHHHHH----------------HcCCCeEEEccCccccC--C---------
Confidence 6678899999996421 2222211 11111111000000000 0
Q ss_pred hhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000379 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1604)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1604)
T Consensus 219 -------------------------------------------------------------------------------- 218 (629)
T PRK11634 219 -------------------------------------------------------------------------------- 218 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC
Q 000379 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1604)
Q Consensus 358 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~ 437 (1604)
.+... . .......|...|..+|... ...++||||+++..+..|++.|..
T Consensus 219 ---------~i~q~-------~-----------~~v~~~~k~~~L~~~L~~~---~~~~~IVF~~tk~~a~~l~~~L~~- 267 (629)
T PRK11634 219 ---------DISQS-------Y-----------WTVWGMRKNEALVRFLEAE---DFDAAIIFVRTKNATLEVAEALER- 267 (629)
T ss_pred ---------ceEEE-------E-----------EEechhhHHHHHHHHHHhc---CCCCEEEEeccHHHHHHHHHHHHh-
Confidence 00000 0 0000124566666666543 234799999999999999999987
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcc
Q 000379 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517 (1604)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R 517 (1604)
.++.+..+||+ |++.+|..++++|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||||
T Consensus 268 ---~g~~~~~lhgd------~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGR 338 (629)
T PRK11634 268 ---NGYNSAALNGD------MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338 (629)
T ss_pred ---CCCCEEEeeCC------CCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccC
Confidence 47889999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCc--eEEEEEeccCHHHHHHHHH
Q 000379 518 HNS--QFILMLERGNLKQRNKLFD 539 (1604)
Q Consensus 518 ~gs--~~i~~v~~~~~~~~~~l~~ 539 (1604)
.|. ..++|+...+....+.+++
T Consensus 339 aGr~G~ai~~v~~~e~~~l~~ie~ 362 (629)
T PRK11634 339 AGRAGRALLFVENRERRLLRNIER 362 (629)
T ss_pred CCCcceEEEEechHHHHHHHHHHH
Confidence 995 4778877554443444443
No 14
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.3e-36 Score=373.30 Aligned_cols=335 Identities=22% Similarity=0.256 Sum_probs=239.1
Q ss_pred CCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhh----CCCCeEEEEEecChhhHHHHHHHHHhh-
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKS----NGFKKLIIFLAPTVHLVHQQYDVIRVH- 116 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~----~~~~~~vl~LvPt~~Lv~Q~~~~i~~~- 116 (1604)
...|+++|.++++.+++ +|+|+.++||||||+++++++.+.+..... .....++|||+||++|+.||++.++.+
T Consensus 107 ~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~ 186 (475)
T PRK01297 107 FPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALT 186 (475)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhh
Confidence 34689999999999974 899999999999999999987765542111 012457999999999999999988875
Q ss_pred --cCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHH
Q 000379 117 --TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1604)
Q Consensus 117 --~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~ 194 (1604)
+++.+..++|+...+. +........++|+|+||++|++.+.++.+.++++++|||||||++.+. .+...+..+.
T Consensus 187 ~~~~~~v~~~~gg~~~~~---~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~-~~~~~l~~i~ 262 (475)
T PRK01297 187 KYTGLNVMTFVGGMDFDK---QLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDM-GFIPQVRQII 262 (475)
T ss_pred ccCCCEEEEEEccCChHH---HHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhc-ccHHHHHHHH
Confidence 4788888999865432 222222346899999999999999988889999999999999999765 3333334343
Q ss_pred hhcC--CCCcEEEEeccCCCCCCCCCcccHHHHHHHHH-hhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchh
Q 000379 195 HKSD--NKPKVFGMTASPVVRKGVSSAMDCEGQISELE-STLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLK 271 (1604)
Q Consensus 195 ~~~~--~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le-~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~ 271 (1604)
...+ ..++++++|||.... +..+. ..+.. |..... .........
T Consensus 263 ~~~~~~~~~q~i~~SAT~~~~------------~~~~~~~~~~~-----------------~~~v~~--~~~~~~~~~-- 309 (475)
T PRK01297 263 RQTPRKEERQTLLFSATFTDD------------VMNLAKQWTTD-----------------PAIVEI--EPENVASDT-- 309 (475)
T ss_pred HhCCCCCCceEEEEEeecCHH------------HHHHHHHhccC-----------------CEEEEe--ccCcCCCCc--
Confidence 3332 346899999995321 11111 11111 100000 000000000
Q ss_pred hhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000379 272 GKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351 (1604)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1604)
T Consensus 310 -------------------------------------------------------------------------------- 309 (475)
T PRK01297 310 -------------------------------------------------------------------------------- 309 (475)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHH
Q 000379 352 QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE 431 (1604)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~ 431 (1604)
+.... .....+.|...|.+++.. ....++||||+++.+++.++
T Consensus 310 ----------------~~~~~------------------~~~~~~~k~~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~ 352 (475)
T PRK01297 310 ----------------VEQHV------------------YAVAGSDKYKLLYNLVTQ---NPWERVMVFANRKDEVRRIE 352 (475)
T ss_pred ----------------ccEEE------------------EEecchhHHHHHHHHHHh---cCCCeEEEEeCCHHHHHHHH
Confidence 00000 000012344445555543 23358999999999999999
Q ss_pred HHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHH
Q 000379 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511 (1604)
Q Consensus 432 ~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr 511 (1604)
+.|.. .++.+..+||. |+..+|.+++++|++|++++||||+++++|||||+|++||+||.|.|..+|+||
T Consensus 353 ~~L~~----~~~~~~~~~g~------~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr 422 (475)
T PRK01297 353 ERLVK----DGINAAQLSGD------VPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHR 422 (475)
T ss_pred HHHHH----cCCCEEEEECC------CCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHh
Confidence 99987 36788899998 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCce--EEEEEeccCHHHHHHHHHHH
Q 000379 512 RGRARQHNSQ--FILMLERGNLKQRNKLFDII 541 (1604)
Q Consensus 512 ~GRA~R~gs~--~i~~v~~~~~~~~~~l~~~~ 541 (1604)
+|||||.|+. .++|+.+++......+++.+
T Consensus 423 ~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~ 454 (475)
T PRK01297 423 IGRTGRAGASGVSISFAGEDDAFQLPEIEELL 454 (475)
T ss_pred hCccCCCCCCceEEEEecHHHHHHHHHHHHHh
Confidence 9999999964 67777655444444444443
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.9e-36 Score=376.68 Aligned_cols=331 Identities=20% Similarity=0.240 Sum_probs=238.2
Q ss_pred CCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHh----hCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 42 INFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIK----SNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~----~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
....|+++|.++++.++. +|+|+.+|||||||++|++++.+.+.... ......++|||+||++|+.|+++.+..+
T Consensus 28 g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l 107 (572)
T PRK04537 28 GFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKF 107 (572)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 345799999999999985 89999999999999999998776553111 1112467999999999999999998875
Q ss_pred c---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc-CcCccceeEEEEeCcccccCCChHHHHHHH
Q 000379 117 T---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-FLSLDIVCFIVIDECHHATGNHPYTKIMKE 192 (1604)
Q Consensus 117 ~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~~im~~ 192 (1604)
. ++++..++|+...+.+ .....++++|||+||+.|++.+... .+.+..+++|||||||++... .+...+..
T Consensus 108 ~~~~~i~v~~l~Gg~~~~~q----~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~-gf~~~i~~ 182 (572)
T PRK04537 108 GADLGLRFALVYGGVDYDKQ----RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDL-GFIKDIRF 182 (572)
T ss_pred hccCCceEEEEECCCCHHHH----HHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhc-chHHHHHH
Confidence 4 6889999998764432 1222346899999999999998764 678899999999999999765 34444444
Q ss_pred HHhhcCC--CCcEEEEeccCCCCCCCCCcccHHHHHHHH-HhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccc
Q 000379 193 FYHKSDN--KPKVFGMTASPVVRKGVSSAMDCEGQISEL-ESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1604)
Q Consensus 193 ~~~~~~~--~p~iLgLTATP~~~~~~~~~~~~~~~i~~L-e~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~ 269 (1604)
++...+. ..+++++|||.... +..+ ...++ .|....+... ......
T Consensus 183 il~~lp~~~~~q~ll~SATl~~~------------v~~l~~~~l~-----------------~p~~i~v~~~--~~~~~~ 231 (572)
T PRK04537 183 LLRRMPERGTRQTLLFSATLSHR------------VLELAYEHMN-----------------EPEKLVVETE--TITAAR 231 (572)
T ss_pred HHHhcccccCceEEEEeCCccHH------------HHHHHHHHhc-----------------CCcEEEeccc--cccccc
Confidence 4443332 56899999996421 1111 11111 1110000000 000000
Q ss_pred hhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHH
Q 000379 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349 (1604)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1604)
T Consensus 232 -------------------------------------------------------------------------------- 231 (572)
T PRK04537 232 -------------------------------------------------------------------------------- 231 (572)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHH
Q 000379 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKV 429 (1604)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~ 429 (1604)
+...+ .......|+..|..++.. ....++||||+++..++.
T Consensus 232 ------------------i~q~~------------------~~~~~~~k~~~L~~ll~~---~~~~k~LVF~nt~~~ae~ 272 (572)
T PRK04537 232 ------------------VRQRI------------------YFPADEEKQTLLLGLLSR---SEGARTMVFVNTKAFVER 272 (572)
T ss_pred ------------------eeEEE------------------EecCHHHHHHHHHHHHhc---ccCCcEEEEeCCHHHHHH
Confidence 00000 000012344555555543 234589999999999999
Q ss_pred HHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHH
Q 000379 430 VERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509 (1604)
Q Consensus 430 L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syi 509 (1604)
|++.|.. .++.+..+||. |++.+|.+++++|++|+++|||||+++++|||+|+|++||+||.|.+..+|+
T Consensus 273 l~~~L~~----~g~~v~~lhg~------l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yv 342 (572)
T PRK04537 273 VARTLER----HGYRVGVLSGD------VPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYV 342 (572)
T ss_pred HHHHHHH----cCCCEEEEeCC------CCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHh
Confidence 9999987 36889999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCce--EEEEEeccCHHHHHHH
Q 000379 510 QSRGRARQHNSQ--FILMLERGNLKQRNKL 537 (1604)
Q Consensus 510 Qr~GRA~R~gs~--~i~~v~~~~~~~~~~l 537 (1604)
||+||++|.|.. .++|+.+.+......+
T Consensus 343 qRiGRaGR~G~~G~ai~~~~~~~~~~l~~i 372 (572)
T PRK04537 343 HRIGRTARLGEEGDAISFACERYAMSLPDI 372 (572)
T ss_pred hhhcccccCCCCceEEEEecHHHHHHHHHH
Confidence 999999999864 7777765444333333
No 16
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-36 Score=337.88 Aligned_cols=337 Identities=24% Similarity=0.312 Sum_probs=251.3
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh---hc
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---HT 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---~~ 117 (1604)
....|.|+|...++.++ +++++.++.||||||.++++++.+-+-.....-+-.+|||||||++|+.|.+.+.++ ++
T Consensus 200 Gy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt 279 (691)
T KOG0338|consen 200 GYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFT 279 (691)
T ss_pred CCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 45679999999999775 899999999999999999999887554222233446899999999999999888765 67
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc-CcCccceeEEEEeCcccccCCChHHHHHHHHHhh
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
++.++++.||.++..+ -..+...+||+|+||++|.+++++. .++++++.++|+|||+++... .|..-|.++...
T Consensus 280 ~I~~~L~vGGL~lk~Q----E~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLee-gFademnEii~l 354 (691)
T KOG0338|consen 280 DITVGLAVGGLDLKAQ----EAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEE-GFADEMNEIIRL 354 (691)
T ss_pred cceeeeeecCccHHHH----HHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHH-HHHHHHHHHHHh
Confidence 8999999999887653 2334458999999999999999874 678999999999999999875 788899999888
Q ss_pred cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhh
Q 000379 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~ 276 (1604)
++...+.+++|||. .+.+.+|-++ ...+|. .++.++..-....
T Consensus 355 cpk~RQTmLFSATM------------teeVkdL~sl----------------SL~kPv--rifvd~~~~~a~~------- 397 (691)
T KOG0338|consen 355 CPKNRQTMLFSATM------------TEEVKDLASL----------------SLNKPV--RIFVDPNKDTAPK------- 397 (691)
T ss_pred ccccccceeehhhh------------HHHHHHHHHh----------------hcCCCe--EEEeCCccccchh-------
Confidence 88899999999994 3455655543 112221 1111211100000
Q ss_pred hhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000379 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1604)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1604)
|.+
T Consensus 398 ---------------------------------LtQ-------------------------------------------- 400 (691)
T KOG0338|consen 398 ---------------------------------LTQ-------------------------------------------- 400 (691)
T ss_pred ---------------------------------hhH--------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHH-hhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~-~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
+|+ + +. +.....+-..|..++. .| ..++||||.++..|..|.-+|-
T Consensus 401 --EFi----R-IR----------------------~~re~dRea~l~~l~~rtf----~~~~ivFv~tKk~AHRl~IllG 447 (691)
T KOG0338|consen 401 --EFI----R-IR----------------------PKREGDREAMLASLITRTF----QDRTIVFVRTKKQAHRLRILLG 447 (691)
T ss_pred --HHh----e-ec----------------------cccccccHHHHHHHHHHhc----ccceEEEEehHHHHHHHHHHHH
Confidence 000 0 00 0000111122222222 22 2479999999999998866553
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhh
Q 000379 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1604)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA 515 (1604)
- -+++++-+||+ +++.+|.+.+++|+++++++||||+|+++||||+.+..||||++|.+...|+||+||+
T Consensus 448 L----lgl~agElHGs------LtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRT 517 (691)
T KOG0338|consen 448 L----LGLKAGELHGS------LTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRT 517 (691)
T ss_pred H----hhchhhhhccc------ccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhh
Confidence 3 57899999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCc--eEEEEEeccCHHHHHHHHHHHHH
Q 000379 516 RQHNS--QFILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 516 ~R~gs--~~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
.|+|. ..+.|+..++ +..+..+++.
T Consensus 518 ARAGRaGrsVtlvgE~d---RkllK~iik~ 544 (691)
T KOG0338|consen 518 ARAGRAGRSVTLVGESD---RKLLKEIIKS 544 (691)
T ss_pred hhcccCcceEEEecccc---HHHHHHHHhh
Confidence 99985 4788887663 3444444433
No 17
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.4e-35 Score=366.48 Aligned_cols=332 Identities=20% Similarity=0.276 Sum_probs=239.7
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---C
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---D 118 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---~ 118 (1604)
...|+++|.++++.++ ++|+|+++|||+|||++|++++.+.+. ....+.++|||+|+++|+.|+.+.++... +
T Consensus 48 ~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~---~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 48 FEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLID---YDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhc---CCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 3469999999999997 589999999999999999998877654 22345679999999999999999888764 4
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcC
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1604)
..+..++|+.... +.|.....+.+|+|+||+.|.+.+.++...++++++||+||||++... .+...+.+.+...+
T Consensus 125 ~~~~~~~g~~~~~----~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~-~~~~~~~~i~~~~~ 199 (401)
T PTZ00424 125 VRCHACVGGTVVR----DDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSR-GFKGQIYDVFKKLP 199 (401)
T ss_pred ceEEEEECCcCHH----HHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhc-chHHHHHHHHhhCC
Confidence 5667777765432 234555567899999999999999998889999999999999999765 34444444555566
Q ss_pred CCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhh
Q 000379 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278 (1604)
Q Consensus 199 ~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~ 278 (1604)
..++++++|||+... +..+... +...|....+....... .. +.
T Consensus 200 ~~~~~i~~SAT~~~~------------~~~~~~~----------------~~~~~~~~~~~~~~~~~--~~----~~--- 242 (401)
T PTZ00424 200 PDVQVALFSATMPNE------------ILELTTK----------------FMRDPKRILVKKDELTL--EG----IR--- 242 (401)
T ss_pred CCcEEEEEEecCCHH------------HHHHHHH----------------HcCCCEEEEeCCCCccc--CC----ce---
Confidence 778999999996421 1111111 11111110000000000 00 00
Q ss_pred hhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHH
Q 000379 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358 (1604)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1604)
..+...
T Consensus 243 ---------------~~~~~~----------------------------------------------------------- 248 (401)
T PTZ00424 243 ---------------QFYVAV----------------------------------------------------------- 248 (401)
T ss_pred ---------------EEEEec-----------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCC
Q 000379 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438 (1604)
Q Consensus 359 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~ 438 (1604)
.....+...+..++.. ....++||||+++..++.+.+.|..
T Consensus 249 ----------------------------------~~~~~~~~~l~~~~~~---~~~~~~ivF~~t~~~~~~l~~~l~~-- 289 (401)
T PTZ00424 249 ----------------------------------EKEEWKFDTLCDLYET---LTITQAIIYCNTRRKVDYLTKKMHE-- 289 (401)
T ss_pred ----------------------------------ChHHHHHHHHHHHHHh---cCCCeEEEEecCcHHHHHHHHHHHH--
Confidence 0000122222333322 1234799999999999999999987
Q ss_pred CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhccc
Q 000379 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518 (1604)
Q Consensus 439 ~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~ 518 (1604)
.++.+..+||. |+.++|..++++|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||||.
T Consensus 290 --~~~~~~~~h~~------~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 361 (401)
T PTZ00424 290 --RDFTVSCMHGD------MDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRF 361 (401)
T ss_pred --CCCcEEEEeCC------CCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccC
Confidence 36789999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cce--EEEEEeccCHHHHHHHHHH
Q 000379 519 NSQ--FILMLERGNLKQRNKLFDI 540 (1604)
Q Consensus 519 gs~--~i~~v~~~~~~~~~~l~~~ 540 (1604)
|.. +++|+++.+......+++.
T Consensus 362 g~~G~~i~l~~~~~~~~~~~~e~~ 385 (401)
T PTZ00424 362 GRKGVAINFVTPDDIEQLKEIERH 385 (401)
T ss_pred CCCceEEEEEcHHHHHHHHHHHHH
Confidence 854 7778876655554555443
No 18
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-36 Score=323.36 Aligned_cols=341 Identities=19% Similarity=0.249 Sum_probs=261.0
Q ss_pred CCCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh---h
Q 000379 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---H 116 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---~ 116 (1604)
-...+|.|.|..++++++ ++|+|-++.||||||.++.++|.+-+. ..+.+--++|+.||++|+.|.++.|.. .
T Consensus 25 l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLs---edP~giFalvlTPTrELA~QiaEQF~alGk~ 101 (442)
T KOG0340|consen 25 LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLS---EDPYGIFALVLTPTRELALQIAEQFIALGKL 101 (442)
T ss_pred hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhc---cCCCcceEEEecchHHHHHHHHHHHHHhccc
Confidence 356789999999999998 599999999999999999999887664 334455689999999999999999875 3
Q ss_pred cCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc----CcCccceeEEEEeCcccccCCChHHHHHHH
Q 000379 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA----FLSLDIVCFIVIDECHHATGNHPYTKIMKE 192 (1604)
Q Consensus 117 ~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~----~~~l~~i~llI~DEaH~~~~~~~~~~im~~ 192 (1604)
.++++.+++|+++.-..+ ..+...++|+|+||+++-+.+... .+.+.++.++|+|||+++... .|..++..
T Consensus 102 l~lK~~vivGG~d~i~qa----~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~-~f~d~L~~ 176 (442)
T KOG0340|consen 102 LNLKVSVIVGGTDMIMQA----AILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAG-CFPDILEG 176 (442)
T ss_pred ccceEEEEEccHHHhhhh----hhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhcc-chhhHHhh
Confidence 478999999998654322 344568999999999999988765 456788999999999999865 78888887
Q ss_pred HHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhh
Q 000379 193 FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1604)
Q Consensus 193 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~ 272 (1604)
.....+...+.+.+|||... .++.|.. ..+ .++ ....+......+
T Consensus 177 i~e~lP~~RQtLlfSATitd------------~i~ql~~---~~i-------------~k~--~a~~~e~~~~vs----- 221 (442)
T KOG0340|consen 177 IEECLPKPRQTLLFSATITD------------TIKQLFG---CPI-------------TKS--IAFELEVIDGVS----- 221 (442)
T ss_pred hhccCCCccceEEEEeehhh------------HHHHhhc---CCc-------------ccc--cceEEeccCCCC-----
Confidence 77666666689999999532 2232221 100 000 000111000000
Q ss_pred hhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000379 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1604)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1604)
....|.
T Consensus 222 -----------tvetL~--------------------------------------------------------------- 227 (442)
T KOG0340|consen 222 -----------TVETLY--------------------------------------------------------------- 227 (442)
T ss_pred -----------chhhhh---------------------------------------------------------------
Confidence 000000
Q ss_pred hhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHH
Q 000379 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1604)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~ 432 (1604)
..|+ .-....|-..|+.+|..|....+..++|||++-.+++.|+.
T Consensus 228 -----q~yI------------------------------~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~ 272 (442)
T KOG0340|consen 228 -----QGYI------------------------------LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSM 272 (442)
T ss_pred -----hhee------------------------------ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHH
Confidence 0000 00113455677888888875567789999999999999999
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHh
Q 000379 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512 (1604)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~ 512 (1604)
.|+.+ .+++..+||. |++++|...+.+||++..++||||+|+++|+|||.+++|||||.|.++..||||+
T Consensus 273 ~l~~l----e~r~~~lHs~------m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRv 342 (442)
T KOG0340|consen 273 TLKNL----EVRVVSLHSQ------MPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRV 342 (442)
T ss_pred HHhhh----ceeeeehhhc------chHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhh
Confidence 99885 6889999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCce--EEEEEeccCHHHHHHHHHHHHH
Q 000379 513 GRARQHNSQ--FILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 513 GRA~R~gs~--~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
||+.|+|.. .+.++...+.+-...+++.+.+
T Consensus 343 GRtARAGR~G~aiSivt~rDv~l~~aiE~~igk 375 (442)
T KOG0340|consen 343 GRTARAGRKGMAISIVTQRDVELLQAIEEEIGK 375 (442)
T ss_pred cchhcccCCcceEEEechhhHHHHHHHHHHHhc
Confidence 999888854 7888888888877777776654
No 19
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-35 Score=365.46 Aligned_cols=339 Identities=22% Similarity=0.274 Sum_probs=257.4
Q ss_pred CCCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeE-EEEEecChhhHHHHHHHHHhh--
Q 000379 41 SINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL-IIFLAPTVHLVHQQYDVIRVH-- 116 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~-vl~LvPt~~Lv~Q~~~~i~~~-- 116 (1604)
.....|.|+|..+++.++. +|+|+.++||||||+++++++.+.+... ...... +|||+||++|+.|.+++++.+
T Consensus 47 ~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~--~~~~~~~aLil~PTRELA~Qi~~~~~~~~~ 124 (513)
T COG0513 47 LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS--VERKYVSALILAPTRELAVQIAEELRKLGK 124 (513)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc--cccCCCceEEECCCHHHHHHHHHHHHHHHh
Confidence 3466899999999999985 9999999999999999999888775421 111112 899999999999999998875
Q ss_pred -c-CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHH
Q 000379 117 -T-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1604)
Q Consensus 117 -~-~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~ 194 (1604)
. ++++..++|+.+..... ...-.+++|||+||++|++++.++.+.++.+.++|+|||+++.+. .+...+....
T Consensus 125 ~~~~~~~~~i~GG~~~~~q~----~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~-Gf~~~i~~I~ 199 (513)
T COG0513 125 NLGGLRVAVVYGGVSIRKQI----EALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDM-GFIDDIEKIL 199 (513)
T ss_pred hcCCccEEEEECCCCHHHHH----HHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcC-CCHHHHHHHH
Confidence 4 57899999998765432 222236999999999999999999999999999999999999987 6666666666
Q ss_pred hhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhh
Q 000379 195 HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274 (1604)
Q Consensus 195 ~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~ 274 (1604)
...+...+++.+|||... .+..|...+ ...|....+.-. ...
T Consensus 200 ~~~p~~~qtllfSAT~~~------------~i~~l~~~~----------------l~~p~~i~v~~~-~~~--------- 241 (513)
T COG0513 200 KALPPDRQTLLFSATMPD------------DIRELARRY----------------LNDPVEIEVSVE-KLE--------- 241 (513)
T ss_pred HhCCcccEEEEEecCCCH------------HHHHHHHHH----------------ccCCcEEEEccc-ccc---------
Confidence 666667899999999542 233333221 112221111100 000
Q ss_pred hhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 000379 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354 (1604)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1604)
T Consensus 242 -------------------------------------------------------------------------------- 241 (513)
T COG0513 242 -------------------------------------------------------------------------------- 241 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHH
Q 000379 355 LQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434 (1604)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L 434 (1604)
.....+.+... .. .....|+..|..++..... .++||||+++..++.|...|
T Consensus 242 --------~~~~~i~q~~~-------~v----------~~~~~k~~~L~~ll~~~~~---~~~IVF~~tk~~~~~l~~~l 293 (513)
T COG0513 242 --------RTLKKIKQFYL-------EV----------ESEEEKLELLLKLLKDEDE---GRVIVFVRTKRLVEELAESL 293 (513)
T ss_pred --------ccccCceEEEE-------Ee----------CCHHHHHHHHHHHHhcCCC---CeEEEEeCcHHHHHHHHHHH
Confidence 00000000000 00 0001488888888876542 37999999999999999999
Q ss_pred hhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhh
Q 000379 435 KKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514 (1604)
Q Consensus 435 ~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GR 514 (1604)
.. .++++..+||+ |++++|..++++|++|+++|||||+|+++|||||++++||+||+|.+...|+||+||
T Consensus 294 ~~----~g~~~~~lhG~------l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGR 363 (513)
T COG0513 294 RK----RGFKVAALHGD------LPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGR 363 (513)
T ss_pred HH----CCCeEEEecCC------CCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCc
Confidence 88 47999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCce--EEEEEecc-CHHHHHHHHHHHH
Q 000379 515 ARQHNSQ--FILMLERG-NLKQRNKLFDIIR 542 (1604)
Q Consensus 515 A~R~gs~--~i~~v~~~-~~~~~~~l~~~~~ 542 (1604)
+||.|.+ .+.|+.+. +......+++.+.
T Consensus 364 TgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~ 394 (513)
T COG0513 364 TGRAGRKGVAISFVTEEEEVKKLKRIEKRLE 394 (513)
T ss_pred cccCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 9999964 78888753 5555566665543
No 20
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-35 Score=309.51 Aligned_cols=332 Identities=22% Similarity=0.289 Sum_probs=251.8
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh---cCC
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---TDF 119 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---~~~ 119 (1604)
-+|...|..++..++ ++|+|+.+..|+|||..+..-+...+. -..+.-.+++|.||++|+.|..+.+... .++
T Consensus 48 ekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d---~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnv 124 (400)
T KOG0328|consen 48 EKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLD---ISVRETQALILSPTRELAVQIQKVILALGDYMNV 124 (400)
T ss_pred CCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecc---cccceeeEEEecChHHHHHHHHHHHHHhcccccc
Confidence 468999999999887 599999999999999866543322221 2234456999999999999999998864 578
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCC
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~ 199 (1604)
++..+.|+.+...-- ++.--+.+|+.+||++.+++++++.+.-..+.++|+|||+.+.+. .+...+-..|...++
T Consensus 125 q~hacigg~n~gedi----kkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~k-gfk~Qiydiyr~lp~ 199 (400)
T KOG0328|consen 125 QCHACIGGKNLGEDI----KKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNK-GFKEQIYDIYRYLPP 199 (400)
T ss_pred eEEEEecCCccchhh----hhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHh-hHHHHHHHHHHhCCC
Confidence 999999998866421 122247899999999999999999999999999999999999876 666666667777888
Q ss_pred CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 200 ~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
..+++.+|||... .+.+ ....|.+.|....+.-+....
T Consensus 200 ~~Qvv~~SATlp~------------eile----------------mt~kfmtdpvrilvkrdeltl-------------- 237 (400)
T KOG0328|consen 200 GAQVVLVSATLPH------------EILE----------------MTEKFMTDPVRILVKRDELTL-------------- 237 (400)
T ss_pred CceEEEEeccCcH------------HHHH----------------HHHHhcCCceeEEEecCCCch--------------
Confidence 8999999999541 1111 112333333221111110000
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
+. .+.
T Consensus 238 ---------------------Eg------------------------------------------------------IKq 242 (400)
T KOG0328|consen 238 ---------------------EG------------------------------------------------------IKQ 242 (400)
T ss_pred ---------------------hh------------------------------------------------------hhh
Confidence 00 000
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCC
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~ 439 (1604)
|+ ... .....|+..|.++.... .-.+++|||+++..++.|.+.+..
T Consensus 243 f~-----------v~v-----------------e~EewKfdtLcdLYd~L---tItQavIFcnTk~kVdwLtekm~~--- 288 (400)
T KOG0328|consen 243 FF-----------VAV-----------------EKEEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMRE--- 288 (400)
T ss_pred he-----------eee-----------------chhhhhHhHHHHHhhhh---ehheEEEEecccchhhHHHHHHHh---
Confidence 00 000 01134666676665543 235899999999999999999988
Q ss_pred CCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC
Q 000379 440 LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 440 ~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g 519 (1604)
.++.+..+||+ |.+++|.++++.||+|+.+|||+|+|.++|||+|.+++||+||+|.+...||||+||.||.|
T Consensus 289 -~nftVssmHGD------m~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFG 361 (400)
T KOG0328|consen 289 -ANFTVSSMHGD------MEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 361 (400)
T ss_pred -hCceeeeccCC------cchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccC
Confidence 57899999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ce--EEEEEeccCHHHHHHHHHHH
Q 000379 520 SQ--FILMLERGNLKQRNKLFDII 541 (1604)
Q Consensus 520 s~--~i~~v~~~~~~~~~~l~~~~ 541 (1604)
.+ .|-|+...+.+..+.+++..
T Consensus 362 RkGvainFVk~~d~~~lrdieq~y 385 (400)
T KOG0328|consen 362 RKGVAINFVKSDDLRILRDIEQYY 385 (400)
T ss_pred CcceEEEEecHHHHHHHHHHHHHH
Confidence 76 67788877777666666554
No 21
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=100.00 E-value=7.8e-38 Score=406.53 Aligned_cols=1185 Identities=19% Similarity=0.178 Sum_probs=628.4
Q ss_pred HhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccch
Q 000379 56 VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS 135 (1604)
Q Consensus 56 ~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~ 135 (1604)
.+..-+++....++-+++++.......+.+........--.+|.|+.+..+.+..+.++..+...+..++|..+.+.|+.
T Consensus 255 ~~~~~e~~~~~~~~~~~~l~~~~~~~~v~k~~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~ 334 (1606)
T KOG0701|consen 255 YIHQFEVLRKYEPHDVFRLIHESVCPLVDKEYLEKIETLSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKS 334 (1606)
T ss_pred hhcccceeeeecccccceeehhhcCchhhHHHHHhhhhhhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchh
Confidence 33447899999999999998855433333211112222336899999999999999999988878888999999999999
Q ss_pred hHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcC--CCCcEEEEeccCCCC
Q 000379 136 QCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVR 213 (1604)
Q Consensus 136 ~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~--~~p~iLgLTATP~~~ 213 (1604)
..|...+....|+..+.+..++.|.+..+.+..+++...++|++....+.|+..+..+.+... ...-++|+|..++.-
T Consensus 335 ~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~~~~~i~~~t~~~~~~ 414 (1606)
T KOG0701|consen 335 FKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAADSYLVILGETLSAVSL 414 (1606)
T ss_pred hHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccchhhHHHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999998876543 446778999887765
Q ss_pred CCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCc-cccchhhhhhhhhhhhch---------
Q 000379 214 KGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKF-CGSDLKGKLEVSWSKFDA--------- 283 (1604)
Q Consensus 214 ~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~-~~~~l~~~~~~~~~~~~~--------- 283 (1604)
++..........+..|....++.+.....+.++..+++.+....+.++.... .....-.++... ...+.
T Consensus 415 ~~~s~~~~~~i~~~~l~~~~~~~v~~~~~~~e~~~~~~~~~~v~~~~~~p~~~~~~~~~~~l~~~-~~~d~~~~~~gk~~ 493 (1606)
T KOG0701|consen 415 KNPSYAYTEQIPRPQLFLRLDANVNKYCARAELLKHVPFLSTVVLPVNSPLKMCIVGLCLKLHKI-GELDDCLHPKGKEP 493 (1606)
T ss_pred cChhHhHHhhcccchhhcccccchHHHHHHHHhccCCCcceeEEEecCchHHHHHHHhHHHHHHh-hhhhhhhcccccch
Confidence 4422222233334555566666555555666777777777766666653211 000000000000 00000
Q ss_pred --hHHHHHHhHhhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH-----H
Q 000379 284 --SLSKLQGSQLNCYKD----MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR-----Q 352 (1604)
Q Consensus 284 --~~~~l~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 352 (1604)
.+..........+.. -+..-......+....+.+....-..|-||....+...+........ +...+ .
T Consensus 494 ~~~~~~~~~~~~ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~e~~-n~~~r~~~~~~ 572 (1606)
T KOG0701|consen 494 KACLEEVDTEEEEEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPKADQPCYLYVIGLELTMPLPEER-NFERRKLYPPE 572 (1606)
T ss_pred HHhhhhhccccchhhccccCCCCCcccccccccchhHHHhcccccCCCCceeeeeeccceecCCchhc-ccccccccCch
Confidence 000000000000000 00000000111112222223333334444443322222111000000 00000 0
Q ss_pred hhHHHHH---------------------HHHHHHHHHhhhcCcc-----chhhcc---ccCCcccccccCCCCHHHHHHH
Q 000379 353 SSLQCKY---------------------FLEEVLHVIGSALPLA-----DKIFLD---FGFDYSKAVDLGYISTKLHELL 403 (1604)
Q Consensus 353 ~~~~~~~---------------------~~~~~~~~l~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~s~K~~~L~ 403 (1604)
....|.. ..-..+......+... ...+.. ..... -........++...|.
T Consensus 573 ~~~~~~~~l~~~~i~~~~~~~~a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~v~~-~~~~~~~~~~~~~~l~ 651 (1606)
T KOG0701|consen 573 DLTYCFGILTAKLIPKIPHFPVATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLNYIFTEVLR-LAKINLEFDPKTAELI 651 (1606)
T ss_pred hhhhhhcccchhhhcccccccceeccCchhHHHHHhhhhhhcchhhccCcchhcccchhhhhh-hhccccccCCchhhHH
Confidence 0000000 0000000000000000 000000 00000 1111233456888888
Q ss_pred HHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccc
Q 000379 404 QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDV 483 (1604)
Q Consensus 404 ~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~v 483 (1604)
..+--+....+.++++|+..-.++..+-..+-..+....++...+.+... .+.+....|......|+.+++.++++|+.
T Consensus 652 ~~llp~~~~~~~~~~~i~~k~l~~iv~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~rn~~~~~~~~~~v~~~~~pss 730 (1606)
T KOG0701|consen 652 ETLLPLNVLADKRAIIIVRKFLEAIVAPSDLMPIPSKDEVRKAKYFDGED-SQDAVGMYRNDDQPQFYVAEVLPLLAPSS 730 (1606)
T ss_pred HHhcccccccccchhhhHHHHHHHHhCcccccCCCChhhhhhhhhccccc-chhhhhhhhcccccceeeeeeeeeccchh
Confidence 87765555567789999888777766555444443333444333333221 12233347788888899999999999999
Q ss_pred cccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCceEEEEEeccCHHHHHHHH------HHHHHHHhhhhccccCCch
Q 000379 484 IEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF------DIIRSERSVTDTALSRDPE 557 (1604)
Q Consensus 484 leeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~~i~~v~~~~~~~~~~l~------~~~~~e~~~~~~~~~r~~~ 557 (1604)
+.+|.|+.-|+.|+++|.-.+..+++|++||++..++.+.+++..++......+- +.++.|.......+ .+.
T Consensus 731 ~~~g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~~~~es~~~~~~~--h~~ 808 (1606)
T KOG0701|consen 731 LFPGLDYETFNEVYRFKYALTITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETERLKDESLEHSLII--HPA 808 (1606)
T ss_pred cCCCcchheeeeeeeccccchhhhccccccccccchhhhcccCchhhccccceeecccchhhhhhHHHhhccCCC--CcC
Confidence 9999999999999999999999999999999999999999998876544322211 11222211111111 111
Q ss_pred hhhh-hccccccccceeecCCCceechhhHHHHHHHHHhhCCCCCCCCCcceEEEEecCceEEEEEEccCCCCcceeecC
Q 000379 558 ACFL-KACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGP 636 (1604)
Q Consensus 558 ~~~l-~~~~~~~~~~y~v~~tga~l~~~~a~~~l~~yc~~l~~d~~~~~~p~~~~~~~~~~~~~~v~LP~~~~~~~~~g~ 636 (1604)
...+ ..........|++..||+.++...|..+|.+||+++++..|...++.. ......|.|++.+|..+|+..+.|.
T Consensus 809 ~~s~~~~~~~~p~~v~~v~~tg~~~s~~ta~~li~~~~~~i~~~~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (1606)
T KOG0701|consen 809 LASLWRRAVCLPEILYRVLLTGALVSLSTAVDLIPHDFSSILSKSFEKEASKS--DKNKDEYSCDLALPKENPVKQVLGK 886 (1606)
T ss_pred cchhhhhhccCcchheeeccccceeeeecccchhhhhhhhccchhhccccccC--CCCccccceeecccCCCchhhhhch
Confidence 1111 111222345688999999999999999999999887777775544432 2234689999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccccccccCCCCCCCCCccccccccccccccccCcccCCCce
Q 000379 637 TSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGV 716 (1604)
Q Consensus 637 ~~~~k~~Ak~~aaf~ac~~L~~~g~ld~~L~P~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~w~~~~~~ 716 (1604)
...+.+.++++++++||.+||++|..+|++.|......... + ++.....-..+ ....+.....+.
T Consensus 887 ~~~~~~~~q~av~l~~~~~~~~~~~~~d~~~~n~~~~~~~~---~-----------~~~~i~~a~~p-~~~~~~~~~~~~ 951 (1606)
T KOG0701|consen 887 ANQLDKVNQQAVELQECIQLHEVGALDDHLVFNKGVADQVL---A-----------KRESISLATRP-ELVSPFIPEPPT 951 (1606)
T ss_pred hhhhhHHHhhhhhhhhhhhhhcccccccccccCccccchhh---h-----------hccccccccCc-ccccccccCCch
Confidence 99999999999999999999999999999998653211000 0 00000000000 000111111111
Q ss_pred EEEEEEEEeeeccccccccceEEeeccccCCcCCCceeeEEeec--ceeEEEEecCcccccCHHHHHHHHHHHHHHHHHh
Q 000379 717 ILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVS--KTVKATVSSSGQVHLDADQMSKAKCFQELFFNGL 794 (1604)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~~~lf~~~ 794 (1604)
..|.|.....+...+. .+...+.+...- ..+-+.-..+ ..++.+. ..+.+++. .|+..+
T Consensus 952 ~s~~~~n~l~~~~~~~--~~~~s~~~~~~~----~~E~~e~i~n~~~~Fs~~~---~~i~~~~s----------~LLEAl 1012 (1606)
T KOG0701|consen 952 TSHLISNRLSPSSPSN--SDLNSLLPNKRS----DWEAVEKILNFRYVFSISL---ASIALSTS----------LLLEAL 1012 (1606)
T ss_pred hhhhhhhhcCccCCCC--CCcccccccccc----cccccccccccceeccccc---cccccchh----------HHHHHh
Confidence 1222221111110000 011111110000 0000000000 0000000 00111111 111100
Q ss_pred hhhchhcccCCCCcchhhcccccCCCCCCceEEEEeccccccCCCCCccccccccccccchhhhhhhhccccccccCCCC
Q 000379 795 FGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNG 874 (1604)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~~~~~~~~IDw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1604)
+.. .+. .++..+--. .-+.+.++|..... -++.... . +
T Consensus 1013 -T~~-~~~----------------------~s~s~Erle----~Lgds~Lk~avsr~-----l~L~ypd---~---~--- 1050 (1606)
T KOG0701|consen 1013 -TTS-SCQ----------------------DSFSLERLE----LLGDSLLKLAVSRH-----LFLTYPD---L---D--- 1050 (1606)
T ss_pred -hcC-ccc----------------------cchhHHHHH----hhHHHHHHHHHHHH-----HHHhCCc---c---c---
Confidence 000 000 000000000 00011222221110 0000000 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCcceeccCCCcCcccccCcEEEeccCCc-eEEEEEe---cCCCCC--CCCCCCC--CCCCCch
Q 000379 875 GNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGR-IYSIVEI---VNNSSA--ESPFDGN--TDDDSKT 946 (1604)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vV~~~~~~~-~Y~v~~i---~~d~~p--~spf~~~--~~~~~~t 946 (1604)
.+...+.++.-++.+. ...+....|. -|+..++ ...+-| .+.++.. ....--+
T Consensus 1051 ----------------Egqls~lr~~~~~~~n---l~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~ 1111 (1606)
T KOG0701|consen 1051 ----------------EGQLSRLRDVNVSNDN---LARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQN 1111 (1606)
T ss_pred ----------------chhHHHHHHhcccccc---hhhhhhcccchhhcccccccccccccccccccccccccccccccc
Confidence 0000000000000000 0000000000 0000000 000000 0011100 0001123
Q ss_pred HHHHHhhhccccccCCCCceEEeeccCCccccccccCCCCCCCCCCCCCCCCCCC-CceeeeCccccee-----ecccHH
Q 000379 947 FVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKP-QMHVHMPPELLVR-----VDVPIS 1020 (1604)
Q Consensus 947 y~~yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~pel~~~-----~~ip~~ 1020 (1604)
|.+|+....++ +.+..... ...+....+. ...+.+++.++.+ -.+-++
T Consensus 1112 ~~~~~e~~e~~-------~df~e~~~-------------------~~~~~~~~~~~~~~~~~~ks~adl~eaLlga~~vD 1165 (1606)
T KOG0701|consen 1112 YILYKELDEKI-------KDFQEAME-------------------KEDGDSRSKGGDHDWLAPKSPADLLEALLGAIYVD 1165 (1606)
T ss_pred cccccchhhhh-------hHHHHhhh-------------------ccCCcccccccccceecCCCHHHHHHHHHHhhhhh
Confidence 33322211100 00000000 0000000000 0111122222111 123334
Q ss_pred HHHHHhhcHHHHHHHHHHHhHHHH---------------------------HHHHhcccCCCCCChHHHHHhhccCCCCC
Q 000379 1021 VVKSLYLLPSVMQRLESLMLASQL---------------------------REEINCHSRNFHIPSSLILEALTTLGCCE 1073 (1604)
Q Consensus 1021 ~~~~~~~lPsi~~ri~~~l~a~~l---------------------------~~~l~~~~~~~~~~~~lll~AlT~~s~~~ 1073 (1604)
.-..+.+.+.+.+.|.-..+..+. .+.+++.|. .....++.+|++|++...
T Consensus 1166 ~~~~~~~~~~~~~~lk~~~~~~dy~~~e~~~~~~~~~~~s~~~~~~~~~~ler~l~~~~~--~~~~~l~~~~~~~~s~~~ 1243 (1606)
T KOG0701|consen 1166 GGLLETFETIGDSFLKWSITNYDYDTLEPKHAGKLSFRRSKIVKKKNLDRLERELGLKFK--FLEAALLVQAFIHCSLRA 1243 (1606)
T ss_pred ccchhhhhHHHHHHHhhhhhhhhhhcccccchhhhhhhhhhHhhhhhHHHHHHhhcccch--hhhhhcchhhcccccccc
Confidence 444445556666666543333322 222233110 123578899999998743
Q ss_pred -CCC-cchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhc--hHHHHHHHHhCCCccccccccCCCCCccCCCc
Q 000379 1074 -SFS-MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC--NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQ 1149 (1604)
Q Consensus 1074 -~~n-~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~--N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~ 1149 (1604)
+.+ +||++|+||++|++.++.+.|..+.....|+++..|..-++ |.+++..+....|+-++++.
T Consensus 1244 ~~ld~~erl~~~~d~vld~l~~~~~~~~~~~~~~~~lt~~~~~~v~~l~e~~~~~~v~~~l~~~l~~~------------ 1311 (1606)
T KOG0701|consen 1244 EGLDATERLEFLGDAVLDKLSDKHPFEVFIRLDGGELTDLREAGVNTLNENDLNVKVPKSLPYNLLDQ------------ 1311 (1606)
T ss_pred cccchHHHHHhhHHHHHHHHHHhhhHhhhhcccCcchhhhhhhhhhhhhhcccccccCCcceeeehhh------------
Confidence 334 89999999999999999999999999999999999999999 77777777766666666543
Q ss_pred cCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCChHHHHHHHHHhCCccc
Q 000379 1150 LSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1229 (1604)
Q Consensus 1150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G~~~a~~~~~~lg~~~~ 1229 (1604)
+.+.+|.++|++|++||++...+|...++.+|+|.+....
T Consensus 1312 ----------------------------------------s~~~~K~i~d~v~sli~~~~~~~~~~s~l~~~~~~~~l~~ 1351 (1606)
T KOG0701|consen 1312 ----------------------------------------SSVLEKSIADSVEALIGASLSEGGPSSALLFMDWPPILLD 1351 (1606)
T ss_pred ----------------------------------------ccCccchHHHHHHHhhhhhhhccCCCcccccccccccccc
Confidence 2367899999999999999999999999998887766544
Q ss_pred ccchhhhhhhhcccccccCCCHHHHHHHHHHhCCccCCHHHHHHHHccCCCCC---CCchH-------------------
Q 000379 1230 LEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE---FYCYQ------------------- 1287 (1604)
Q Consensus 1230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~---~~~ye------------------- 1287 (1604)
+..+..... ..... -....+..+|+.+||.|.++.++.+|+||.||.. ..|||
T Consensus 1352 i~es~~~~~----~~~~~-~~l~~~~~~e~~l~y~f~~~~~l~~a~th~s~~~~~~~~C~qrleflgd~vld~~it~hl~ 1426 (1606)
T KOG0701|consen 1352 IPESIASPD----SIDEL-RQLLSFGKFEEKLNYRFKLKPYLTQATTHASYIYNRITDCYQRLEFLGDAVLDYLITKHLY 1426 (1606)
T ss_pred ccccccccc----hhHHH-HHHHHHHhhhcccchhhhhhhcccccccccccccCccchhhhhHHHhHHhhhhhhhhhccc
Confidence 433211100 00000 0112377889999999999999999999999976 67888
Q ss_pred -------------------------------HHHHHhcccChHHHHHHHHHHHcCCC--CCCCCCCCCCCCCCchhhHHH
Q 000379 1288 -------------------------------NLYKHLQHCSTLLLSQITEYVKSFPK--PGETTDSGPSMKAPKALGDLL 1334 (1604)
Q Consensus 1288 -------------------------------~L~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~k~l~D~~ 1334 (1604)
.+++++.+.++++...|..+...... .....++.+.+..||++||++
T Consensus 1427 ~~~~~~sp~~~td~rsa~vnn~~~a~~av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~~~~~~~~edievpKa~gdi~ 1506 (1606)
T KOG0701|consen 1427 EDPRQHSPGVLTDLRSALVNNTIFASLAVKADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSLFGWEEDIEVPKALGDIF 1506 (1606)
T ss_pred ccccccCchhhhhhhhHhhccccchhhHHhhcchhHHHhhccccccchHHHHHHHHhhccccCCCchhhcccchhhhhhh
Confidence 33444444444444444444433111 111224567799999999999
Q ss_pred HHHHhceeecCCCChHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHhcCCcceeeeeeeCceEEEEEEEEEcCeEEEE
Q 000379 1335 ESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVG 1414 (1604)
Q Consensus 1335 Ea~iGAi~lD~g~~~~~~~~~~~~~l~~~i~~~~~~~~p~~~L~e~~~~~~~~~~~~~~~~g~~~~~~v~v~v~g~~~~~ 1414 (1604)
|++.||||+|+|...+.+..-+.+........+....||++.+...+.+ ..+++..+ +.|.+.+. -..
T Consensus 1507 esiagai~~dsg~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~~~k---------~~d~~~~~--~tv~~~~~-~~~ 1574 (1606)
T KOG0701|consen 1507 ESIAGAIKLDSGNMMEPCIEKFWALPPRSPIRELLELHPERALFGKCEK---------VADAGKVR--VTVDVFNK-EVF 1574 (1606)
T ss_pred hcccceeecCcccccchHhhcCcCCCCccchhhhccccceeeccchhhh---------hhhccceE--EEEEeccc-chh
Confidence 9999999999996555544444333333333344445555555443332 11222223 33444443 345
Q ss_pred EEEeCCHHHHHHHHHHHHHHHhhhhh
Q 000379 1415 EGQERSRKAAKGKAASQLLKKLEVCE 1440 (1604)
Q Consensus 1415 ~g~g~skk~Ak~~AA~~AL~~L~~~~ 1440 (1604)
.|.|.+++.||..|++.|++.|...+
T Consensus 1575 ~~~g~~~~~aK~s~~k~A~~ll~~~~ 1600 (1606)
T KOG0701|consen 1575 AGEGRNYRIAKASAAKAALKLLKKLG 1600 (1606)
T ss_pred hhcchhhhhhhhhHHHHHHHHHHHhh
Confidence 79999999999999999999998743
No 22
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=100.00 E-value=5.6e-36 Score=325.55 Aligned_cols=93 Identities=31% Similarity=0.449 Sum_probs=86.9
Q ss_pred HHHHHHHHhcccCCCCCChHHHHHhhccCCCCCC----CCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhh
Q 000379 1041 ASQLREEINCHSRNFHIPSSLILEALTTLGCCES----FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1116 (1604)
Q Consensus 1041 a~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~~----~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v 1116 (1604)
...|.+.+++.|.| +.++.+||||+|+... .|||||||||||||.++++.+||.+||+.+||.||.+|+.+|
T Consensus 8 ~~~l~~~lg~~f~~----~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV 83 (235)
T COG0571 8 LEALEKKLGYTFKD----KELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALV 83 (235)
T ss_pred HHHHHHHhCCCcCC----HHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 35677889999998 8999999999999754 489999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhCCCccccccc
Q 000379 1117 CNSTLHKLGTDRKLQGYIRDS 1137 (1604)
Q Consensus 1117 ~N~~L~~~a~~~gl~~~i~~~ 1137 (1604)
|+..|+.+|+.+||+.||+..
T Consensus 84 ~~~~La~ia~~l~l~~~l~lg 104 (235)
T COG0571 84 SEESLAEIARELGLGDYLRLG 104 (235)
T ss_pred HHHHHHHHHHHhCccchhhcc
Confidence 999999999999999999865
No 23
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=100.00 E-value=2.7e-35 Score=325.13 Aligned_cols=385 Identities=23% Similarity=0.270 Sum_probs=297.6
Q ss_pred CceeeeCcccceeecccHHHHHHHhhcHHHHHHHHHHHhHHHHHHHHhcccCCCCCChHHHHHhhccCCCCCC-------
Q 000379 1002 QMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCES------- 1074 (1604)
Q Consensus 1002 ~~~~~L~pel~~~~~ip~~~~~~~~~lPsi~~ri~~~l~a~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~~------- 1074 (1604)
+..+.++.+-+..++|-.++.+.++++|...|+|....-.+.|.+.|+|.|.+ .-++.-||||||+...
T Consensus 4 ~~~~~~~~~gf~~tg~~~dv~~h~~m~~~~~~hir~~~~l~~~e~~i~y~f~~----r~~~~lal~h~s~~~~~Gt~~dh 79 (533)
T KOG1817|consen 4 NVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQSLDHLEELIGYTFQD----RCLLQLALTHPSHKLNYGTNPDH 79 (533)
T ss_pred ceeEeeccchHHHhCcchHHHHHHHHHHHHhhhhhHHHhHHHHHHHhCeeecc----hHHHHHHhcCchHHhhCCCCchh
Confidence 34556777778889999999999999999999999999999999999999998 8899999999986211
Q ss_pred --------------------------------------------------CCcchhhhhhhhHHHHHHHHHHHhhCCCCC
Q 000379 1075 --------------------------------------------------FSMERLELLGDSVLKYAVSCHLFLTYPKKH 1104 (1604)
Q Consensus 1075 --------------------------------------------------~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~ 1104 (1604)
..+||||||||++..+++|.++|..+|...
T Consensus 80 ~kns~tncg~r~~~yg~~~~~~~~kr~~gin~li~imk~l~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~ 159 (533)
T KOG1817|consen 80 AKNSLTNCGIRQPKYGDRKEHIMTKRKLGINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLE 159 (533)
T ss_pred hhccccccCcCCcccchhHHHHHHHHHhhhhHHHHHHhhccCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHcccccc
Confidence 058999999999999999999999999999
Q ss_pred cchHHHHHHHhhchHHHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCc
Q 000379 1105 EGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP 1184 (1604)
Q Consensus 1105 eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1184 (1604)
||.|-..|..+|.|.+|+.+++++.++.|+.-.. |+.
T Consensus 160 eggLatyrta~vqnr~la~lakklrkd~fl~yah---------g~d---------------------------------- 196 (533)
T KOG1817|consen 160 EGGLATYRTAIVQNRHLAKLAKKLRKDEFLLYAH---------GYD---------------------------------- 196 (533)
T ss_pred ccchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhc---------Ccc----------------------------------
Confidence 9999999999999999999999999999987542 110
Q ss_pred cCCCccccCCchhHHHHHHHHHHhhhcCChHHHHHHHHHh--CCcccccchhh--h-------hhhhcccccccCCCHHH
Q 000379 1185 CDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWL--GIDADLEVSLV--D-------DCITRASLRSYVPRINE 1253 (1604)
Q Consensus 1185 ~~~~~~~~~~K~lADvvEAliGA~~~~~G~~~a~~~~~~l--g~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~ 1253 (1604)
...-.-....+|+||||+|||.|+++|...+....+.. +.+.-....|. + +...+......+|....
T Consensus 197 --l~~~~E~Kha~an~feavi~a~~l~g~~~~~e~lfs~~~~~~epvlee~w~~~~ehelq~~ep~gDr~~~~~~Ppllp 274 (533)
T KOG1817|consen 197 --LCFETELKHAMANCFEAVIGAKYLDGGLVVAEKLFSRALFVYEPVLEEEWEHEPEHELQEQEPAGDRVLITKYPPLLP 274 (533)
T ss_pred --hhhHHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHHHHhhccCchhhccccCCCcCcccccCCCccccccccCCCCCc
Confidence 00000124679999999999999999988777643322 11111110000 0 11111222233455556
Q ss_pred HHHHHHHhCCccCCHHHHHHHHccCCCCC----CCchH----------------HHHHHhcccChHHHHHHHHHHHcCCC
Q 000379 1254 IKDIESKIGYEFTVKFLLQEAITHASVQE----FYCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFPK 1313 (1604)
Q Consensus 1254 ~~~le~~lgy~F~~~~LL~~AlTH~S~~~----~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~~ 1313 (1604)
+.++|+++|-.|.+.++|.+|||-+|.+. ..+|| .||.+||+.+||-++.++.-+++-+.
T Consensus 275 ~~~~e~~~g~vF~Hirlla~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNet 354 (533)
T KOG1817|consen 275 LTQFEEIIGIVFIHIRLLARAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNET 354 (533)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHH
Confidence 78999999999999999999999999884 45777 89999999999999998887776221
Q ss_pred CC------------CCCCCC--CCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhccccCCCCCC---CCchHH
Q 000379 1314 PG------------ETTDSG--PSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLE---LPPLRE 1376 (1604)
Q Consensus 1314 ~~------------~~~~~~--~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~~~i~~~~~~---~~p~~~ 1376 (1604)
.. ...... .....-|.++|+|||+|||+|+|.|. +.+.+|+..++.|.+...+.. .+|++.
T Consensus 355 qakva~~lgf~e~li~n~~~k~~~~lk~K~~ADlfEAfiGaLyvD~~l--e~~~qf~~~l~~Prl~~fi~nq~wndpksk 432 (533)
T KOG1817|consen 355 QAKVADDLGFHEYLITNFDLKDFQNLKLKDYADLFEAFIGALYVDKGL--EYCRQFLRVLFFPRLKEFIRNQDWNDPKSK 432 (533)
T ss_pred HHHHHHHhCCchhhhhCcchhhhhhhhHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHhhHHHHHHHHhhhccCcHHH
Confidence 11 000001 12234689999999999999999777 888888887777776543332 489999
Q ss_pred HHHHHHhcCCc------ce-eeeeee-Cce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000379 1377 LIELCDSLGYF------VK-ENCTLK-GEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1377 L~e~~~~~~~~------~~-~~~~~~-g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
|+.+|-...+. ++ +++... |+. +.|+|+|+++|+ .+|+|.|+|.|.|+.+||++||+.++.
T Consensus 433 Lqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gk-rlat~~G~nik~Ae~rAA~~ALe~~~~ 503 (533)
T KOG1817|consen 433 LQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGK-RLATGVGSNIKQAEMRAAMQALENLKM 503 (533)
T ss_pred HHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCE-EEeeccCchHhHHHHHHHHHHHHHHHh
Confidence 99999876653 33 344444 443 679999999995 999999999999999999999999985
No 24
>PRK14718 ribonuclease III; Provisional
Probab=100.00 E-value=2.5e-35 Score=335.81 Aligned_cols=212 Identities=27% Similarity=0.355 Sum_probs=179.8
Q ss_pred HHHHHHHhcccCCCCCChHHHHHhhccCCCCCCCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHH
Q 000379 1042 SQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121 (1604)
Q Consensus 1042 ~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L 1121 (1604)
..|+++|+|.|.| +.||.+||||+|+.. .||||||||||+||+++++.+||.+||+++||.||.+|+.+|||.+|
T Consensus 4 ~~LEkrLGY~Fkn----~~LL~eALTH~Sys~-e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetL 78 (467)
T PRK14718 4 SQLESRLRYEFRN----AELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (467)
T ss_pred HHHHHHhCCCcCC----HHHHHHHHhccCcCc-ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHH
Confidence 4678899999988 899999999999865 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHH
Q 000379 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCA 1201 (1604)
Q Consensus 1122 ~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvv 1201 (1604)
+.+|+++||.+||+... +.
T Consensus 79 A~IAr~LGL~d~Lrlg~---------gE---------------------------------------------------- 97 (467)
T PRK14718 79 YEIAQALNISDGLRLGE---------GE---------------------------------------------------- 97 (467)
T ss_pred HHHHHHcCchHHHhhCC---------cc----------------------------------------------------
Confidence 99999999999998541 00
Q ss_pred HHHHHHhhhcCChHHHHHHHHHhCCcccccchhhhhhhhcccccccCCCHHHHHHHHHHhCCccCCHHHHHHHHccCCCC
Q 000379 1202 EALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281 (1604)
Q Consensus 1202 EAliGA~~~~~G~~~a~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~ 1281 (1604)
T Consensus 98 -------------------------------------------------------------------------------- 97 (467)
T PRK14718 98 -------------------------------------------------------------------------------- 97 (467)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhc
Q 000379 1282 EFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILS 1361 (1604)
Q Consensus 1282 ~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~ 1361 (1604)
....+...+++|+|+|||||||||+|+|+ +.++.|+..++.
T Consensus 98 -------------------------------------~~sgG~~~~sILADvFEALIGAIYLDsG~--e~a~~fI~~ll~ 138 (467)
T PRK14718 98 -------------------------------------LRSGGFRRPSILADAFEAIIGAVFLDGGF--EAAQGVIKRLYV 138 (467)
T ss_pred -------------------------------------cccCCCCChhHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHH
Confidence 00001236788888888888888888887 788888888887
Q ss_pred cccCC---CCCCCCchHHHHHHHHhcCCcceeee--eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHH
Q 000379 1362 PIVTP---DKLELPPLRELIELCDSLGYFVKENC--TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLK 1434 (1604)
Q Consensus 1362 ~~i~~---~~~~~~p~~~L~e~~~~~~~~~~~~~--~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~ 1434 (1604)
+.++. ....+|||+.||||||+++...|.|. ...|+. +.|+|.|+++|..+.+.|.|.|||+|++.||+.||+
T Consensus 139 p~i~~~d~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~ 218 (467)
T PRK14718 139 PILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALD 218 (467)
T ss_pred HHHhhhcccccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHH
Confidence 77643 23457999999999999998877443 345665 789999999997677999999999999999999999
Q ss_pred Hhhh
Q 000379 1435 KLEV 1438 (1604)
Q Consensus 1435 ~L~~ 1438 (1604)
.|..
T Consensus 219 kL~~ 222 (467)
T PRK14718 219 EVTA 222 (467)
T ss_pred Hhcc
Confidence 9975
No 25
>PRK12371 ribonuclease III; Reviewed
Probab=100.00 E-value=4.1e-35 Score=324.76 Aligned_cols=212 Identities=24% Similarity=0.267 Sum_probs=170.3
Q ss_pred HHHHHHHhcccCCCCCChHHHHHhhccCCCCC--CCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchH
Q 000379 1042 SQLREEINCHSRNFHIPSSLILEALTTLGCCE--SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119 (1604)
Q Consensus 1042 ~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~--~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~ 1119 (1604)
..|++.|+|.|.| +.++.+||||+|+.. ..||||||||||+||+++++.+||.+||+++||.||.+|+.+|||.
T Consensus 13 ~~le~~lgy~F~~----~~Ll~~AlTH~S~~~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~ 88 (235)
T PRK12371 13 SILEERTGHRFAN----KERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAE 88 (235)
T ss_pred HHHHHHHCCCCCC----HHHHHHHHcCcCcccCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChH
Confidence 4578889999988 899999999999864 4699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHH
Q 000379 1120 TLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIAD 1199 (1604)
Q Consensus 1120 ~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lAD 1199 (1604)
+|+.+|.++||++||+..+ +.. .
T Consensus 89 ~La~ia~~lgL~~~i~~~~---------~~~-----------------------------------~------------- 111 (235)
T PRK12371 89 TCAAIADEIGLHDLIRTGS---------DVK-----------------------------------K------------- 111 (235)
T ss_pred HHHHHHHHCCcHHHhccCc---------chh-----------------------------------h-------------
Confidence 9999999999999998542 000 0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHhCCcccccchhhhhhhhcccccccCCCHHHHHHHHHHhCCccCCHHHHHHHHccCC
Q 000379 1200 CAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279 (1604)
Q Consensus 1200 vvEAliGA~~~~~G~~~a~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S 1279 (1604)
T Consensus 112 -------------------------------------------------------------------------------- 111 (235)
T PRK12371 112 -------------------------------------------------------------------------------- 111 (235)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhh
Q 000379 1280 VQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPI 1359 (1604)
Q Consensus 1280 ~~~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~ 1359 (1604)
..+...+++++|+|||+|||||+|+|+ +.+++|+..+
T Consensus 112 -----------------------------------------~~~~~~~~ilad~~EAliGAiylD~G~--~~a~~~i~~~ 148 (235)
T PRK12371 112 -----------------------------------------LTGKRLLNVRADVVEALIAAIYLDGGL--EAARPFIQRY 148 (235)
T ss_pred -----------------------------------------cCCcccchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHH
Confidence 000123456666666666666666665 6666666666
Q ss_pred hccccCC-CCCCCCchHHHHHHHHhcCCcce-eee-eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHH
Q 000379 1360 LSPIVTP-DKLELPPLRELIELCDSLGYFVK-ENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLK 1434 (1604)
Q Consensus 1360 l~~~i~~-~~~~~~p~~~L~e~~~~~~~~~~-~~~-~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~ 1434 (1604)
+.+.+.. .....|||+.||||||+.+...| +.+ ...|+. +.|+|.|+++|. ..++|.|.|||+|++.||++||+
T Consensus 149 ~~~~~~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~-~~~~g~G~sKK~Ae~~AA~~al~ 227 (235)
T PRK12371 149 WQKRALETDAARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGF-APETGEGRSKRAAEQVAAEKMLE 227 (235)
T ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCE-EEEEeeeCCHHHHHHHHHHHHHH
Confidence 6665543 23457999999999998776655 333 345665 789999999997 68999999999999999999999
Q ss_pred Hhhh
Q 000379 1435 KLEV 1438 (1604)
Q Consensus 1435 ~L~~ 1438 (1604)
.|..
T Consensus 228 ~~~~ 231 (235)
T PRK12371 228 REGV 231 (235)
T ss_pred Hhhh
Confidence 9865
No 26
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-33 Score=349.32 Aligned_cols=332 Identities=17% Similarity=0.237 Sum_probs=231.0
Q ss_pred CCCCCcHHHHHHHHHhhc----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 42 INFIPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
..+.+|+||.+++.++.+ +++|+++|||+|||++++.++..+ ++++|||||+..|++||.++|.+++
T Consensus 252 ~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 252 PTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred cCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 357899999999999874 478999999999999999877653 2459999999999999999999987
Q ss_pred C---CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHh--------cCcCccceeEEEEeCcccccCCChH
Q 000379 118 D---FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK--------AFLSLDIVCFIVIDECHHATGNHPY 186 (1604)
Q Consensus 118 ~---~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~--------~~~~l~~i~llI~DEaH~~~~~~~~ 186 (1604)
. ..+..++|+.... + .....|+|+||+++.+...+ ..+.-..|++||+|||||+... .|
T Consensus 323 ~l~~~~I~~~tg~~k~~------~---~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~-~f 392 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER------F---HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA-MF 392 (732)
T ss_pred CCCCceEEEEecCcccc------c---ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH-HH
Confidence 4 4566666653221 1 12578999999988643221 1233457899999999999643 45
Q ss_pred HHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhh-hhccCCcceeeeeccCCCc
Q 000379 187 TKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEM-EVFVPSAKESCRFYDQSKF 265 (1604)
Q Consensus 187 ~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l-~~~~~~p~e~~~~y~~~~~ 265 (1604)
.+++..+ ..+++|||||||.+.++. +..|...++..++..+-.+.+ ..+..++.-..+...-.
T Consensus 393 r~il~~l-----~a~~RLGLTATP~ReD~~---------~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t-- 456 (732)
T TIGR00603 393 RRVLTIV-----QAHCKLGLTATLVREDDK---------ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMT-- 456 (732)
T ss_pred HHHHHhc-----CcCcEEEEeecCcccCCc---------hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCC--
Confidence 5555543 457899999999987532 345677778777765433332 23333322111111000
Q ss_pred cccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH
Q 000379 266 CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQE 345 (1604)
Q Consensus 266 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~ 345 (1604)
+ +....+ + .. .
T Consensus 457 -----------------~-----------------~~~~~y---l---------------------------~~---~-- 467 (732)
T TIGR00603 457 -----------------P-----------------EFYREY---L---------------------------RE---N-- 467 (732)
T ss_pred -----------------H-----------------HHHHHH---H---------------------------Hh---c--
Confidence 0 000000 0 00 0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHH
Q 000379 346 ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII 425 (1604)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ 425 (1604)
.. ... .+.. ....|+..+..++..+. ..+.++||||++..
T Consensus 468 ---------~~-~k~---~l~~--------------------------~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~ 507 (732)
T TIGR00603 468 ---------SR-KRM---LLYV--------------------------MNPNKFRACQFLIRFHE-QRGDKIIVFSDNVF 507 (732)
T ss_pred ---------ch-hhh---HHhh--------------------------hChHHHHHHHHHHHHHh-hcCCeEEEEeCCHH
Confidence 00 000 0000 01357777777776543 45679999999998
Q ss_pred HHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC-CceEEEEccccccccCCCCccEEEEcCCC-C
Q 000379 426 AAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG-KVNLLFATDVIEEGMHVPNCSYVIRFDLP-K 503 (1604)
Q Consensus 426 ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g-~~~iLIaT~vleeGIDip~~nlVI~fD~p-~ 503 (1604)
.+..+.+.|. +.+++|. ++..+|..++++|++| .+++||+|+|+.+|||+|++++||+++.| .
T Consensus 508 ~l~~~a~~L~---------~~~I~G~------ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~g 572 (732)
T TIGR00603 508 ALKEYAIKLG---------KPFIYGP------TSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYG 572 (732)
T ss_pred HHHHHHHHcC---------CceEECC------CCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCC
Confidence 8888877662 3468898 7999999999999975 78999999999999999999999999987 5
Q ss_pred CHHHHHHHhhhhcccCc---------eEEEEEeccCHH
Q 000379 504 TVSSYIQSRGRARQHNS---------QFILMLERGNLK 532 (1604)
Q Consensus 504 s~~syiQr~GRA~R~gs---------~~i~~v~~~~~~ 532 (1604)
|...|+||+||+.|.+. .++.++.+++.+
T Consensus 573 S~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 573 SRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred CHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 99999999999999873 257788777665
No 27
>PRK12372 ribonuclease III; Reviewed
Probab=100.00 E-value=9.2e-35 Score=331.14 Aligned_cols=212 Identities=27% Similarity=0.349 Sum_probs=178.5
Q ss_pred HHHHHHHhcccCCCCCChHHHHHhhccCCCCCCCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHH
Q 000379 1042 SQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121 (1604)
Q Consensus 1042 ~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L 1121 (1604)
..|++.|+|.|.| ++||.+||||+|+.. .||||||||||+||+++++.+||.+||+++||.||.+|+.+|||.+|
T Consensus 4 ~~LEk~LGY~Fkn----~~LL~eALTH~Sy~~-~~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tL 78 (413)
T PRK12372 4 SQLESRLRYEFRN----AELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (413)
T ss_pred HHHHHHhCCCcCC----HHHHHHHHhcccccc-ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHH
Confidence 4578899999988 899999999999865 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHH
Q 000379 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCA 1201 (1604)
Q Consensus 1122 ~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvv 1201 (1604)
+.+|.++||.+||+... +.
T Consensus 79 A~IA~~LgL~~~Lrlg~---------ge---------------------------------------------------- 97 (413)
T PRK12372 79 YEIAQALNISEGLRLGE---------GE---------------------------------------------------- 97 (413)
T ss_pred HHHHHHcCchHhhhcCc---------ch----------------------------------------------------
Confidence 99999999999988431 00
Q ss_pred HHHHHHhhhcCChHHHHHHHHHhCCcccccchhhhhhhhcccccccCCCHHHHHHHHHHhCCccCCHHHHHHHHccCCCC
Q 000379 1202 EALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281 (1604)
Q Consensus 1202 EAliGA~~~~~G~~~a~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~ 1281 (1604)
T Consensus 98 -------------------------------------------------------------------------------- 97 (413)
T PRK12372 98 -------------------------------------------------------------------------------- 97 (413)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhc
Q 000379 1282 EFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILS 1361 (1604)
Q Consensus 1282 ~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~ 1361 (1604)
....+...+++|+|+|||+|||||+|+|+ +.++.|+..++.
T Consensus 98 -------------------------------------~~sgg~~~~kILADvfEALIGAIYLDsG~--e~a~~fV~~ll~ 138 (413)
T PRK12372 98 -------------------------------------LRSGGFRRPSILADAFEAIIGAVFLDGGF--EAAQGVIKRLYV 138 (413)
T ss_pred -------------------------------------hhcCCCCCccHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHH
Confidence 00001236788888888888888888886 678888888877
Q ss_pred cccCC---CCCCCCchHHHHHHHHhcCCcceeee--eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHH
Q 000379 1362 PIVTP---DKLELPPLRELIELCDSLGYFVKENC--TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLK 1434 (1604)
Q Consensus 1362 ~~i~~---~~~~~~p~~~L~e~~~~~~~~~~~~~--~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~ 1434 (1604)
+.++. ....+|||+.||||||+++...|.|. ...|+. ..|+|.|+++|..+.+.|.|.|||+|++.||+.||+
T Consensus 139 p~l~~~~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~ 218 (413)
T PRK12372 139 PILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALD 218 (413)
T ss_pred HHHhhcccccccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHH
Confidence 76643 23457999999999999998877443 345654 789999999997677899999999999999999999
Q ss_pred Hhhh
Q 000379 1435 KLEV 1438 (1604)
Q Consensus 1435 ~L~~ 1438 (1604)
+|..
T Consensus 219 kL~~ 222 (413)
T PRK12372 219 EVMA 222 (413)
T ss_pred HHhc
Confidence 9985
No 28
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-35 Score=313.52 Aligned_cols=331 Identities=20% Similarity=0.267 Sum_probs=254.5
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH---HHhhcCC
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV---IRVHTDF 119 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~---i~~~~~~ 119 (1604)
-.|.|.|.+.++.++ ++|+++-+..|+|||-+++.++.+.+. .....-.++++|||++|+-|.... +.+++++
T Consensus 106 ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid---~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i 182 (459)
T KOG0326|consen 106 EKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKID---PKKNVIQAIILVPTRELALQTSQVCKELSKHLGI 182 (459)
T ss_pred CCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcC---ccccceeEEEEeecchhhHHHHHHHHHHhcccCe
Confidence 368999999999998 599999999999999999999877664 333445689999999998876555 4557899
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCC
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~ 199 (1604)
++...+||.+...- ....-+..+++|+||++++++..++.-.+++..++|+|||+.+.+. .+..++..+....+.
T Consensus 183 ~vmvttGGT~lrDD----I~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~-~F~~~~e~li~~lP~ 257 (459)
T KOG0326|consen 183 KVMVTTGGTSLRDD----IMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSV-DFQPIVEKLISFLPK 257 (459)
T ss_pred EEEEecCCcccccc----eeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhch-hhhhHHHHHHHhCCc
Confidence 99999999875431 1223357899999999999999999999999999999999999876 788899988888899
Q ss_pred CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 200 ~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
.+++++.|||-... + ..-+.+|..+|-+...
T Consensus 258 ~rQillySATFP~t--------------------------V--k~Fm~~~l~kPy~INL--------------------- 288 (459)
T KOG0326|consen 258 ERQILLYSATFPLT--------------------------V--KGFMDRHLKKPYEINL--------------------- 288 (459)
T ss_pred cceeeEEecccchh--------------------------H--HHHHHHhccCcceeeh---------------------
Confidence 99999999993211 0 0112223333321100
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
+++|-+. ...+
T Consensus 289 -----------------------------------------M~eLtl~----------------------------GvtQ 299 (459)
T KOG0326|consen 289 -----------------------------------------MEELTLK----------------------------GVTQ 299 (459)
T ss_pred -----------------------------------------hhhhhhc----------------------------chhh
Confidence 0000000 0000
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCC
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~ 439 (1604)
|. .+ -..+.|+..|-.++....- .++||||++...++.|++.+.++
T Consensus 300 yY--------af---------------------V~e~qKvhCLntLfskLqI---NQsIIFCNS~~rVELLAkKITel-- 345 (459)
T KOG0326|consen 300 YY--------AF---------------------VEERQKVHCLNTLFSKLQI---NQSIIFCNSTNRVELLAKKITEL-- 345 (459)
T ss_pred he--------ee---------------------echhhhhhhHHHHHHHhcc---cceEEEeccchHhHHHHHHHHhc--
Confidence 00 00 0125677777777765432 37999999999999999999885
Q ss_pred CCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC
Q 000379 440 LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 440 ~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g 519 (1604)
++.|.++|.. |.+..|..++.+||+|.|+.||||+.+-+|||+|++|+||+||.|++..+|.||+||+||.|
T Consensus 346 --GyscyyiHak------M~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFG 417 (459)
T KOG0326|consen 346 --GYSCYYIHAK------MAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG 417 (459)
T ss_pred --cchhhHHHHH------HHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCC
Confidence 8999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred c--eEEEEEeccCHHHHHHHHHHHH
Q 000379 520 S--QFILMLERGNLKQRNKLFDIIR 542 (1604)
Q Consensus 520 s--~~i~~v~~~~~~~~~~l~~~~~ 542 (1604)
- -.|-+++-++......+++.+.
T Consensus 418 hlGlAInLityedrf~L~~IE~eLG 442 (459)
T KOG0326|consen 418 HLGLAINLITYEDRFNLYRIEQELG 442 (459)
T ss_pred CcceEEEEEehhhhhhHHHHHHHhc
Confidence 5 3677777554444444554443
No 29
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6.8e-34 Score=322.49 Aligned_cols=360 Identities=22% Similarity=0.297 Sum_probs=248.9
Q ss_pred CCCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHh------hCCCCeEEEEEecChhhHHHHHHHH
Q 000379 41 SINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIK------SNGFKKLIIFLAPTVHLVHQQYDVI 113 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~------~~~~~~~vl~LvPt~~Lv~Q~~~~i 113 (1604)
..-..|.|.|..++...+. +|+|.+++||||||.++++++...+.... ....++.+++|+||++|+.|+.++-
T Consensus 263 ~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 263 PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 3456899999999998874 99999999999999999987766554222 2345677999999999999998886
Q ss_pred Hhh---cCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC---ChHH
Q 000379 114 RVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN---HPYT 187 (1604)
Q Consensus 114 ~~~---~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~---~~~~ 187 (1604)
.++ ++++++.+.|+.+.+...- ..-.+++|+|+||+.|++.|.+.++.+++...+|+|||+++.+- ..+.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~f----qls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~ 418 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQGF----QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQ 418 (673)
T ss_pred HHhcccccceEEEEecccchhhhhh----hhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHH
Confidence 665 4789999999988765321 23458999999999999999999999999999999999999853 2344
Q ss_pred HHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccc
Q 000379 188 KIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG 267 (1604)
Q Consensus 188 ~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~ 267 (1604)
.|+..+ |..+....+.+ .+. -..+-..+. .+ .+|..+..++
T Consensus 419 ~iL~~m----------------Pssn~k~~tde-~~~-~~~~~~~~~----------------~~-----k~yrqT~mft 459 (673)
T KOG0333|consen 419 KILEQM----------------PSSNAKPDTDE-KEG-EERVRKNFS----------------SS-----KKYRQTVMFT 459 (673)
T ss_pred HHHHhC----------------CccccCCCccc-hhh-HHHHHhhcc----------------cc-----cceeEEEEEe
Confidence 444422 32221100000 000 011111111 00 0121111111
Q ss_pred cchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHH
Q 000379 268 SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEEC 347 (1604)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~ 347 (1604)
.+. +..+..+.+.....+..+ ..|. ..
T Consensus 460 atm-----------------------------~p~verlar~ylr~pv~v-----tig~-------------~g------ 486 (673)
T KOG0333|consen 460 ATM-----------------------------PPAVERLARSYLRRPVVV-----TIGS-------------AG------ 486 (673)
T ss_pred cCC-----------------------------ChHHHHHHHHHhhCCeEE-----Eecc-------------CC------
Confidence 111 111111111100000000 0000 00
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHH
Q 000379 348 EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAA 427 (1604)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta 427 (1604)
.-...+++ ....-..+.|...|+++|+++. +..+|||||++..|
T Consensus 487 ---------------k~~~rveQ------------------~v~m~~ed~k~kkL~eil~~~~---~ppiIIFvN~kk~~ 530 (673)
T KOG0333|consen 487 ---------------KPTPRVEQ------------------KVEMVSEDEKRKKLIEILESNF---DPPIIIFVNTKKGA 530 (673)
T ss_pred ---------------CCccchhe------------------EEEEecchHHHHHHHHHHHhCC---CCCEEEEEechhhH
Confidence 00000000 0111234678999999998763 45799999999999
Q ss_pred HHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHH
Q 000379 428 KVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507 (1604)
Q Consensus 428 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~s 507 (1604)
+.|++.|.+. ++++..+||+ -++++|+.+|..||+|..+|||||+|+++|||||++.+||+||++++...
T Consensus 531 d~lAk~LeK~----g~~~~tlHg~------k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieD 600 (673)
T KOG0333|consen 531 DALAKILEKA----GYKVTTLHGG------KSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIED 600 (673)
T ss_pred HHHHHHHhhc----cceEEEeeCC------ccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHH
Confidence 9999999984 7999999998 58999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccCc--eEEEEEeccCHHHHHHHHHHHH
Q 000379 508 YIQSRGRARQHNS--QFILMLERGNLKQRNKLFDIIR 542 (1604)
Q Consensus 508 yiQr~GRA~R~gs--~~i~~v~~~~~~~~~~l~~~~~ 542 (1604)
|+||+||+||+|. .++.|++..+..-+..|.+.+.
T Consensus 601 YtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 601 YTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred HHHHhccccccccCceeEEEeccchhHHHHHHHHHHH
Confidence 9999999999996 4899998887665555655554
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.8e-33 Score=346.39 Aligned_cols=318 Identities=17% Similarity=0.265 Sum_probs=222.3
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEE
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVE 122 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~ 122 (1604)
-.+||+|.++++.++ ++|+++++|||+|||+++++++.. ..+.++||+|+++|+.||.+.++. .++.+.
T Consensus 10 ~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---------~~~~~lVi~P~~~L~~dq~~~l~~-~gi~~~ 79 (470)
T TIGR00614 10 SSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---------SDGITLVISPLISLMEDQVLQLKA-SGIPAT 79 (470)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---------cCCcEEEEecHHHHHHHHHHHHHH-cCCcEE
Confidence 468999999999987 489999999999999999988653 134589999999999999999984 578888
Q ss_pred EEECCCCCCccchhHHHHh-cCCCcEEEEcHHHHHHHH-HhcCc-CccceeEEEEeCcccccCC-ChHHHHHHHH--Hhh
Q 000379 123 EYYGAKGVDEWDSQCWQKE-INKNDVLVMTPQILLDAL-RKAFL-SLDIVCFIVIDECHHATGN-HPYTKIMKEF--YHK 196 (1604)
Q Consensus 123 ~~~G~~~~~~~~~~~w~~~-~~~~~ViV~T~q~Ll~~l-~~~~~-~l~~i~llI~DEaH~~~~~-~~~~~im~~~--~~~ 196 (1604)
.+.|+...+. ....+... ....+|+++||+.+.... ....+ ...++++|||||||++... |.+......+ +..
T Consensus 80 ~l~~~~~~~~-~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 158 (470)
T TIGR00614 80 FLNSSQSKEQ-QKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQ 158 (470)
T ss_pred EEeCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHH
Confidence 8877654332 11223332 245899999999875322 11112 5678999999999999754 3444333322 112
Q ss_pred cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhh
Q 000379 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~ 276 (1604)
..+..++++||||+... ....+...++.. .|......++....
T Consensus 159 ~~~~~~~l~lTAT~~~~-----------~~~di~~~l~l~---------------~~~~~~~s~~r~nl----------- 201 (470)
T TIGR00614 159 KFPNVPIMALTATASPS-----------VREDILRQLNLK---------------NPQIFCTSFDRPNL----------- 201 (470)
T ss_pred HcCCCceEEEecCCCHH-----------HHHHHHHHcCCC---------------CCcEEeCCCCCCCc-----------
Confidence 22456799999998532 122333333210 01000000000000
Q ss_pred hhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000379 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1604)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1604)
.| ..
T Consensus 202 ------------------~~-~v--------------------------------------------------------- 205 (470)
T TIGR00614 202 ------------------YY-EV--------------------------------------------------------- 205 (470)
T ss_pred ------------------EE-EE---------------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
.......+..+.+++... ..+.++||||+++..++.++..|..
T Consensus 206 -----------------------------------~~~~~~~~~~l~~~l~~~--~~~~~~IIF~~s~~~~e~la~~L~~ 248 (470)
T TIGR00614 206 -----------------------------------RRKTPKILEDLLRFIRKE--FKGKSGIIYCPSRKKSEQVTASLQN 248 (470)
T ss_pred -----------------------------------EeCCccHHHHHHHHHHHh--cCCCceEEEECcHHHHHHHHHHHHh
Confidence 000001223334444321 2234679999999999999999987
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
.++.+..+||. |++++|.+++++|++|+++|||||+++++|||+|++++||+||+|.+...|+||+||||
T Consensus 249 ----~g~~~~~~H~~------l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaG 318 (470)
T TIGR00614 249 ----LGIAAGAYHAG------LEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAG 318 (470)
T ss_pred ----cCCCeeEeeCC------CCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcC
Confidence 47889999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCc--eEEEEEeccCHH
Q 000379 517 QHNS--QFILMLERGNLK 532 (1604)
Q Consensus 517 R~gs--~~i~~v~~~~~~ 532 (1604)
|.|. .+++++...+..
T Consensus 319 R~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 319 RDGLPSECHLFYAPADIN 336 (470)
T ss_pred CCCCCceEEEEechhHHH
Confidence 9985 477777765544
No 31
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-33 Score=313.77 Aligned_cols=326 Identities=21% Similarity=0.312 Sum_probs=244.6
Q ss_pred CCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCe--EEEEEecChhhHHHHHHHHHhhc----
Q 000379 45 IPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK--LIIFLAPTVHLVHQQYDVIRVHT---- 117 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~--~vl~LvPt~~Lv~Q~~~~i~~~~---- 117 (1604)
..+|.|..+++.+++ +++.|-++||||||+++++++.+.+.......++. -+|||+||++|+.|+.+++..+.
T Consensus 28 ~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~ 107 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLP 107 (567)
T ss_pred ccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhh
Confidence 468999999999885 99999999999999999999999885444333333 68999999999999999987653
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc--CcCccceeEEEEeCcccccCCChHHHHHHHHHh
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA--FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~ 195 (1604)
++.+..+.||..++. +...+. -++++|+|+||++|.+++.+. .+++..+.+||+|||+++.+- .+..-+..++.
T Consensus 108 ~l~~~l~vGG~~v~~-Di~~fk--ee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldm-gFe~~~n~ILs 183 (567)
T KOG0345|consen 108 NLNCELLVGGRSVEE-DIKTFK--EEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDM-GFEASVNTILS 183 (567)
T ss_pred ccceEEEecCccHHH-HHHHHH--HhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcc-cHHHHHHHHHH
Confidence 688999999987765 222222 247899999999999999984 455669999999999999876 66666777777
Q ss_pred hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
..+...|.=++|||-.. ...+|-.. ....|..+.+.-......++
T Consensus 184 ~LPKQRRTGLFSATq~~------------~v~dL~ra----------------GLRNpv~V~V~~k~~~~tPS------- 228 (567)
T KOG0345|consen 184 FLPKQRRTGLFSATQTQ------------EVEDLARA----------------GLRNPVRVSVKEKSKSATPS------- 228 (567)
T ss_pred hcccccccccccchhhH------------HHHHHHHh----------------hccCceeeeecccccccCch-------
Confidence 77777788888999431 11222111 11111111110000000000
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
.+.
T Consensus 229 ---------------~L~-------------------------------------------------------------- 231 (567)
T KOG0345|consen 229 ---------------SLA-------------------------------------------------------------- 231 (567)
T ss_pred ---------------hhc--------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
.+|+ .-.-..|+..|+++|..+ ...+||||..+=..+++...++.
T Consensus 232 --~~Y~------------------------------v~~a~eK~~~lv~~L~~~---~~kK~iVFF~TCasVeYf~~~~~ 276 (567)
T KOG0345|consen 232 --LEYL------------------------------VCEADEKLSQLVHLLNNN---KDKKCIVFFPTCASVEYFGKLFS 276 (567)
T ss_pred --ceee------------------------------EecHHHHHHHHHHHHhcc---ccccEEEEecCcchHHHHHHHHH
Confidence 0000 000135888889988763 45699999999999999888887
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhh
Q 000379 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1604)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA 515 (1604)
.. +....+..+||. |+++.|..++..|++..-.+|+||+|+++|||||++++||+||+|.++.+|+||.||+
T Consensus 277 ~~--l~~~~i~~iHGK------~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRT 348 (567)
T KOG0345|consen 277 RL--LKKREIFSIHGK------MSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRT 348 (567)
T ss_pred HH--hCCCcEEEecch------hcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchh
Confidence 75 356778899999 9999999999999998788999999999999999999999999999999999999999
Q ss_pred cccCce--EEEEEecc
Q 000379 516 RQHNSQ--FILMLERG 529 (1604)
Q Consensus 516 ~R~gs~--~i~~v~~~ 529 (1604)
+|.|.. .++|+.+.
T Consensus 349 aR~gr~G~Aivfl~p~ 364 (567)
T KOG0345|consen 349 ARAGREGNAIVFLNPR 364 (567)
T ss_pred hhccCccceEEEeccc
Confidence 999964 78888763
No 32
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=326.17 Aligned_cols=344 Identities=22% Similarity=0.302 Sum_probs=249.7
Q ss_pred CCCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhh-----C--CCCeEEEEEecChhhHHHHHHH
Q 000379 41 SINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKS-----N--GFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~-----~--~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
.....|+|+|+-+++.+.+ ++.+++|+||+|||.+++++|...+..... . +..+.++||+||++||.|.+++
T Consensus 92 ~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 92 SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 3456799999999999974 889999999999999999988776542211 1 1247899999999999999999
Q ss_pred HHhhc---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHH
Q 000379 113 IRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189 (1604)
Q Consensus 113 i~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i 189 (1604)
.+++. ++++...||+.+.... -.....+++|+|+||+.|.+.+..+.+.|+++.++|+|||+++.+.-.+.--
T Consensus 172 a~k~~~~s~~~~~~~ygg~~~~~q----~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~ 247 (482)
T KOG0335|consen 172 ARKFSYLSGMKSVVVYGGTDLGAQ----LRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQ 247 (482)
T ss_pred HHhhcccccceeeeeeCCcchhhh----hhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhcccccc
Confidence 99976 5788889998654432 2334468999999999999999999999999999999999999874233222
Q ss_pred HHHHHhhc----CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCc
Q 000379 190 MKEFYHKS----DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKF 265 (1604)
Q Consensus 190 m~~~~~~~----~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~ 265 (1604)
++...... ....+.+.+|||-... +..+-..+ ...- |
T Consensus 248 Ir~iv~~~~~~~~~~~qt~mFSAtfp~~------------iq~l~~~f----------------l~~~------y----- 288 (482)
T KOG0335|consen 248 IRKIVEQLGMPPKNNRQTLLFSATFPKE------------IQRLAADF----------------LKDN------Y----- 288 (482)
T ss_pred HHHHhcccCCCCccceeEEEEeccCChh------------hhhhHHHH----------------hhcc------c-----
Confidence 33222221 2345667777773210 11100000 0000 0
Q ss_pred cccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH
Q 000379 266 CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQE 345 (1604)
Q Consensus 266 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~ 345 (1604)
..
T Consensus 289 -------------------------------i~----------------------------------------------- 290 (482)
T KOG0335|consen 289 -------------------------------IF----------------------------------------------- 290 (482)
T ss_pred -------------------------------eE-----------------------------------------------
Confidence 00
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCC-CC-----cEEEE
Q 000379 346 ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKS-TQ-----VLCII 419 (1604)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~-~~-----~~~II 419 (1604)
....++-....+....+..-....|...|+++|...... .. .+++|
T Consensus 291 ----------------------------laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlv 342 (482)
T KOG0335|consen 291 ----------------------------LAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLV 342 (482)
T ss_pred ----------------------------EEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEE
Confidence 000000000000111111122356777888887633211 22 38999
Q ss_pred EEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEc
Q 000379 420 FVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499 (1604)
Q Consensus 420 Fv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~f 499 (1604)
||+++..|..|..+|.. .++++..+||. .++.+|.+.++.||+|.+.+||||+|+++|||||++.+||+|
T Consensus 343 FvEt~~~~d~l~~~l~~----~~~~~~sIhg~------~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIny 412 (482)
T KOG0335|consen 343 FVETKRGADELAAFLSS----NGYPAKSIHGD------RTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINY 412 (482)
T ss_pred EeeccchhhHHHHHHhc----CCCCceeecch------hhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEe
Confidence 99999999999999988 57889999998 689999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhhhhcccCc--eEEEEEeccCHHHHHHHHHHHHH
Q 000379 500 DLPKTVSSYIQSRGRARQHNS--QFILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 500 D~p~s~~syiQr~GRA~R~gs--~~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
|+|.+..+|+||+||+||.|. ..+.|++..+....+.|.+++.+
T Consensus 413 DmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 413 DMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred ecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 999999999999999999995 57888886666666777777654
No 33
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-33 Score=315.77 Aligned_cols=328 Identities=20% Similarity=0.291 Sum_probs=255.5
Q ss_pred CCCCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHH-hhCCCCeEEEEEecChhhHHHHHHHHHh--
Q 000379 40 NSINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAI-KSNGFKKLIIFLAPTVHLVHQQYDVIRV-- 115 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~-~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~-- 115 (1604)
...-..+...|...+..++ ++++|.++-||||||++++.++.+.+... .....+--+|||.||++|+-|.++++.+
T Consensus 86 e~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 86 EAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred hcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 3456789999999999988 59999999999999999999887766532 2334445599999999999999999886
Q ss_pred -hcCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc-CcCccceeEEEEeCcccccCCChHHHHHHHH
Q 000379 116 -HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-FLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193 (1604)
Q Consensus 116 -~~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~~im~~~ 193 (1604)
+.++..+.+.||..+.. -...+.+.+|+||||++|+..+... .++-+++.+||+|||+++.+- .|...|..+
T Consensus 166 k~h~fSaGLiiGG~~~k~-----E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDM-GFk~tL~~I 239 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKF-----ELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDM-GFKKTLNAI 239 (758)
T ss_pred hccccccceeecCchhHH-----HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHH-hHHHHHHHH
Confidence 56899999999987553 3445668999999999999998764 677889999999999999865 777888877
Q ss_pred HhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhh--cCCceeeccchhhhhhccCCcceeeeeccCCCccccchh
Q 000379 194 YHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELEST--LDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLK 271 (1604)
Q Consensus 194 ~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~--l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~ 271 (1604)
....+...+.|++|||+..+ ..+|.++ -|..+..+ +-......+.
T Consensus 240 i~~lP~~RQTLLFSATqt~s------------vkdLaRLsL~dP~~vsv------------------he~a~~atP~--- 286 (758)
T KOG0343|consen 240 IENLPKKRQTLLFSATQTKS------------VKDLARLSLKDPVYVSV------------------HENAVAATPS--- 286 (758)
T ss_pred HHhCChhheeeeeecccchh------------HHHHHHhhcCCCcEEEE------------------eccccccChh---
Confidence 77788888999999998643 3333332 12111111 1000000000
Q ss_pred hhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000379 272 GKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351 (1604)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1604)
T Consensus 287 -------------------------------------------------------------------------------- 286 (758)
T KOG0343|consen 287 -------------------------------------------------------------------------------- 286 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHH
Q 000379 352 QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE 431 (1604)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~ 431 (1604)
.+.+... .-....|+..|...+..+. ..+.|||+.+-..+..++
T Consensus 287 ---------------~L~Q~y~------------------~v~l~~Ki~~L~sFI~shl---k~K~iVF~SscKqvkf~~ 330 (758)
T KOG0343|consen 287 ---------------NLQQSYV------------------IVPLEDKIDMLWSFIKSHL---KKKSIVFLSSCKQVKFLY 330 (758)
T ss_pred ---------------hhhheEE------------------EEehhhHHHHHHHHHHhcc---ccceEEEEehhhHHHHHH
Confidence 0000000 0012468888888887754 358999999999999999
Q ss_pred HHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHH
Q 000379 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511 (1604)
Q Consensus 432 ~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr 511 (1604)
+.+.++. +++....+||. |+++.|.++..+|-...--||+||+|+++|+|+|++|.||+||.|.++.+||||
T Consensus 331 e~F~rlr--pg~~l~~L~G~------~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHR 402 (758)
T KOG0343|consen 331 EAFCRLR--PGIPLLALHGT------MSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHR 402 (758)
T ss_pred HHHHhcC--CCCceeeeccc------hhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHH
Confidence 9998863 57889999999 999999999999999889999999999999999999999999999999999999
Q ss_pred hhhhcccCc--eEEEEEeccC
Q 000379 512 RGRARQHNS--QFILMLERGN 530 (1604)
Q Consensus 512 ~GRA~R~gs--~~i~~v~~~~ 530 (1604)
+||+.|.+. +.++|+.+++
T Consensus 403 vGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 403 VGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred hhhhhcccCCCceEEEEcchh
Confidence 999999874 4667776654
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=9.1e-33 Score=350.18 Aligned_cols=313 Identities=18% Similarity=0.264 Sum_probs=218.5
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcE
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV 121 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v 121 (1604)
.-.+|++|.++++.++ ++|+|+.||||+|||++|.+++... .+.+|||+|+++|+.+|...+.. .++++
T Consensus 458 ~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------~GiTLVISPLiSLmqDQV~~L~~-~GI~A 527 (1195)
T PLN03137 458 NHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------PGITLVISPLVSLIQDQIMNLLQ-ANIPA 527 (1195)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------CCcEEEEeCHHHHHHHHHHHHHh-CCCeE
Confidence 3478999999999988 5999999999999999999987532 24699999999999988777764 58888
Q ss_pred EEEECCCCCCccchhHHHHh---cCCCcEEEEcHHHHHH--HHHhc---CcCccceeEEEEeCcccccCC-ChHHHHHHH
Q 000379 122 EEYYGAKGVDEWDSQCWQKE---INKNDVLVMTPQILLD--ALRKA---FLSLDIVCFIVIDECHHATGN-HPYTKIMKE 192 (1604)
Q Consensus 122 ~~~~G~~~~~~~~~~~w~~~---~~~~~ViV~T~q~Ll~--~l~~~---~~~l~~i~llI~DEaH~~~~~-~~~~~im~~ 192 (1604)
..+.|+...... ...+... ....+|+++||+.|.. .+.+. ......+.+|||||||++... |.|+...+.
T Consensus 528 a~L~s~~s~~eq-~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~ 606 (1195)
T PLN03137 528 ASLSAGMEWAEQ-LEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQG 606 (1195)
T ss_pred EEEECCCCHHHH-HHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHH
Confidence 888888764432 1222222 2578999999999852 12211 112345889999999999865 455443332
Q ss_pred H--HhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCC---ceeeccchhhhhhccCCcceeeeeccCCCccc
Q 000379 193 F--YHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS---QVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG 267 (1604)
Q Consensus 193 ~--~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~---~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~ 267 (1604)
+ +....+..++++||||..... . ..+...|+. .++. ....+|. ..|..
T Consensus 607 L~~Lr~~fp~vPilALTATAT~~V--------~---eDI~~~L~l~~~~vfr--------~Sf~RpN---L~y~V----- 659 (1195)
T PLN03137 607 LGILKQKFPNIPVLALTATATASV--------K---EDVVQALGLVNCVVFR--------QSFNRPN---LWYSV----- 659 (1195)
T ss_pred HHHHHHhCCCCCeEEEEecCCHHH--------H---HHHHHHcCCCCcEEee--------cccCccc---eEEEE-----
Confidence 1 112223467899999964321 1 122222221 0000 0000110 00000
Q ss_pred cchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHH
Q 000379 268 SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEEC 347 (1604)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~ 347 (1604)
...
T Consensus 660 -------------------------------v~k---------------------------------------------- 662 (1195)
T PLN03137 660 -------------------------------VPK---------------------------------------------- 662 (1195)
T ss_pred -------------------------------ecc----------------------------------------------
Confidence 000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHH
Q 000379 348 EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAA 427 (1604)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta 427 (1604)
....+..+.+++... ..+.++||||.+|..+
T Consensus 663 -----------------------------------------------~kk~le~L~~~I~~~--~~~esgIIYC~SRke~ 693 (1195)
T PLN03137 663 -----------------------------------------------TKKCLEDIDKFIKEN--HFDECGIIYCLSRMDC 693 (1195)
T ss_pred -----------------------------------------------chhHHHHHHHHHHhc--ccCCCceeEeCchhHH
Confidence 000112222333221 1234689999999999
Q ss_pred HHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHH
Q 000379 428 KVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507 (1604)
Q Consensus 428 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~s 507 (1604)
+.++..|.. .++.+..+||+ |++++|..++++|++|+++|||||+++++|||+|++++||+||+|.++.+
T Consensus 694 E~LAe~L~~----~Gika~~YHAG------Ls~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEs 763 (1195)
T PLN03137 694 EKVAERLQE----FGHKAAFYHGS------MDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 763 (1195)
T ss_pred HHHHHHHHH----CCCCeeeeeCC------CCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHH
Confidence 999999987 47889999998 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccCc--eEEEEEecc
Q 000379 508 YIQSRGRARQHNS--QFILMLERG 529 (1604)
Q Consensus 508 yiQr~GRA~R~gs--~~i~~v~~~ 529 (1604)
|+||+|||||.|. .+++|+...
T Consensus 764 YyQriGRAGRDG~~g~cILlys~~ 787 (1195)
T PLN03137 764 YHQECGRAGRDGQRSSCVLYYSYS 787 (1195)
T ss_pred HHhhhcccCCCCCCceEEEEecHH
Confidence 9999999999995 477777643
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.5e-32 Score=353.09 Aligned_cols=333 Identities=18% Similarity=0.252 Sum_probs=224.9
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc--CC
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--DF 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--~~ 119 (1604)
...|+++|.++++.++ ++|+|+.+|||||||+++.+++.+.+. ..++.++|||+||++|+.||.+.++.+. ++
T Consensus 34 ~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~----~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i 109 (742)
T TIGR03817 34 IHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALA----DDPRATALYLAPTKALAADQLRAVRELTLRGV 109 (742)
T ss_pred CCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHh----hCCCcEEEEEcChHHHHHHHHHHHHHhccCCe
Confidence 4479999999999998 599999999999999999999877664 1345679999999999999999999864 67
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc----CcCccceeEEEEeCcccccCC--ChHHHHHHHH
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA----FLSLDIVCFIVIDECHHATGN--HPYTKIMKEF 193 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~----~~~l~~i~llI~DEaH~~~~~--~~~~~im~~~ 193 (1604)
++..+.|+...+. . .....+++|+|+||+.|...+... ...++++++||+||||.+.+. .....+++.+
T Consensus 110 ~v~~~~Gdt~~~~---r--~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL 184 (742)
T TIGR03817 110 RPATYDGDTPTEE---R--RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRL 184 (742)
T ss_pred EEEEEeCCCCHHH---H--HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHH
Confidence 8888888765321 1 223346899999999986433211 123688999999999999753 1223344333
Q ss_pred Hh---hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccch
Q 000379 194 YH---KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDL 270 (1604)
Q Consensus 194 ~~---~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l 270 (1604)
.. .....|+++++|||.... ....+..++..+..+... ..+........+.+....
T Consensus 185 ~ri~~~~g~~~q~i~~SATi~n~------------~~~~~~l~g~~~~~i~~~-----~~~~~~~~~~~~~p~~~~---- 243 (742)
T TIGR03817 185 RRLCARYGASPVFVLASATTADP------------AAAASRLIGAPVVAVTED-----GSPRGARTVALWEPPLTE---- 243 (742)
T ss_pred HHHHHhcCCCCEEEEEecCCCCH------------HHHHHHHcCCCeEEECCC-----CCCcCceEEEEecCCccc----
Confidence 22 234568999999996421 112233333222111100 001110111111110000
Q ss_pred hhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 000379 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350 (1604)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1604)
... ..+
T Consensus 244 ----------------------------~~~---------------------~~~------------------------- 249 (742)
T TIGR03817 244 ----------------------------LTG---------------------ENG------------------------- 249 (742)
T ss_pred ----------------------------ccc---------------------ccc-------------------------
Confidence 000 000
Q ss_pred HHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHH
Q 000379 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430 (1604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L 430 (1604)
. .........+...|.+++.. +.++||||++|..++.+
T Consensus 250 ---------------------~----------------~~r~~~~~~~~~~l~~l~~~-----~~~~IVF~~sr~~ae~l 287 (742)
T TIGR03817 250 ---------------------A----------------PVRRSASAEAADLLADLVAE-----GARTLTFVRSRRGAELV 287 (742)
T ss_pred ---------------------c----------------ccccchHHHHHHHHHHHHHC-----CCCEEEEcCCHHHHHHH
Confidence 0 00000001233444444432 35899999999999999
Q ss_pred HHHHhhCC----CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHH
Q 000379 431 ERFVKKVP----FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506 (1604)
Q Consensus 431 ~~~L~~~~----~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~ 506 (1604)
+..|+... ...+.++..+||. +++++|.+++++|++|++++||||+++++|||||++++||+||.|.+..
T Consensus 288 ~~~l~~~l~~~~~~l~~~v~~~hgg------~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~ 361 (742)
T TIGR03817 288 AAIARRLLGEVDPDLAERVAAYRAG------YLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRA 361 (742)
T ss_pred HHHHHHHHHhhccccccchhheecC------CCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHH
Confidence 99876531 0013567788887 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccCce--EEEEEe
Q 000379 507 SYIQSRGRARQHNSQ--FILMLE 527 (1604)
Q Consensus 507 syiQr~GRA~R~gs~--~i~~v~ 527 (1604)
+|+||+|||||.|.. .++++.
T Consensus 362 ~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 362 SLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred HHHHhccccCCCCCCcEEEEEeC
Confidence 999999999999864 444443
No 36
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.7e-32 Score=346.51 Aligned_cols=314 Identities=17% Similarity=0.252 Sum_probs=218.7
Q ss_pred CCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEE
Q 000379 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
.+|++|.++++.++ ++|+++++|||+|||+++++++... .+.++|++|+++|+.||.+.++. .++.+..
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------~g~tlVisPl~sL~~dqv~~l~~-~gi~~~~ 94 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------DGLTLVVSPLISLMKDQVDQLLA-NGVAAAC 94 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------CCCEEEEecHHHHHHHHHHHHHH-cCCcEEE
Confidence 68999999999987 5899999999999999999876531 23589999999999999999985 4777777
Q ss_pred EECCCCCCccchhHHHHh-cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-ChHHHHHHHHH--hhcCC
Q 000379 124 YYGAKGVDEWDSQCWQKE-INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEFY--HKSDN 199 (1604)
Q Consensus 124 ~~G~~~~~~~~~~~w~~~-~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im~~~~--~~~~~ 199 (1604)
+.++...+.. ...+... ....+++++||+.|........+...++++||+||||++... |.+...+..+- ....+
T Consensus 95 ~~s~~~~~~~-~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p 173 (607)
T PRK11057 95 LNSTQTREQQ-LEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFP 173 (607)
T ss_pred EcCCCCHHHH-HHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCC
Confidence 7766543321 1222222 245789999999986432222334457899999999998754 33332222221 11224
Q ss_pred CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 200 ~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
..++++||||+.... ...+...++. ..|......++....
T Consensus 174 ~~~~v~lTAT~~~~~-----------~~di~~~l~l---------------~~~~~~~~~~~r~nl-------------- 213 (607)
T PRK11057 174 TLPFMALTATADDTT-----------RQDIVRLLGL---------------NDPLIQISSFDRPNI-------------- 213 (607)
T ss_pred CCcEEEEecCCChhH-----------HHHHHHHhCC---------------CCeEEEECCCCCCcc--------------
Confidence 567899999975321 1112222210 001000000000000
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
.|. +
T Consensus 214 ---------------~~~-v------------------------------------------------------------ 217 (607)
T PRK11057 214 ---------------RYT-L------------------------------------------------------------ 217 (607)
T ss_pred ---------------eee-e------------------------------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCC
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~ 439 (1604)
. ....++..+..++.. ..+.++||||+++..++.++..|..
T Consensus 218 ------------~---------------------~~~~~~~~l~~~l~~---~~~~~~IIFc~tr~~~e~la~~L~~--- 258 (607)
T PRK11057 218 ------------V---------------------EKFKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQS--- 258 (607)
T ss_pred ------------e---------------------eccchHHHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHh---
Confidence 0 000122233333332 2345799999999999999999987
Q ss_pred CCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC
Q 000379 440 LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 440 ~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g 519 (1604)
.++.+..+||. |+.++|.+++++|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||||.|
T Consensus 259 -~g~~v~~~Ha~------l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G 331 (607)
T PRK11057 259 -RGISAAAYHAG------LDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG 331 (607)
T ss_pred -CCCCEEEecCC------CCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCC
Confidence 47889999998 89999999999999999999999999999999999999999999999999999999999998
Q ss_pred c--eEEEEEeccCH
Q 000379 520 S--QFILMLERGNL 531 (1604)
Q Consensus 520 s--~~i~~v~~~~~ 531 (1604)
. ..++|+...+.
T Consensus 332 ~~~~~ill~~~~d~ 345 (607)
T PRK11057 332 LPAEAMLFYDPADM 345 (607)
T ss_pred CCceEEEEeCHHHH
Confidence 4 57788776543
No 37
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.2e-31 Score=351.55 Aligned_cols=328 Identities=19% Similarity=0.188 Sum_probs=217.3
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhC---CCCeEEEEEecChhhHHHHHHHHHh----
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN---GFKKLIIFLAPTVHLVHQQYDVIRV---- 115 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~---~~~~~vl~LvPt~~Lv~Q~~~~i~~---- 115 (1604)
-.|+++|.++++.++ ++|+|+++|||||||++|.+++.+.+...... ..+.++|+|+|+++|+.|+++.+..
T Consensus 31 ~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~ 110 (876)
T PRK13767 31 GTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTE 110 (876)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 359999999999987 58999999999999999999877655422111 2356799999999999999886542
Q ss_pred ---h-------c-CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCc--CccceeEEEEeCcccccC
Q 000379 116 ---H-------T-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL--SLDIVCFIVIDECHHATG 182 (1604)
Q Consensus 116 ---~-------~-~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~--~l~~i~llI~DEaH~~~~ 182 (1604)
. + ++++...+|+..... ........++|+|+||+.|..++.+..+ .+.++++||+||||++.+
T Consensus 111 i~~~~~~~g~~~~~i~v~v~~Gdt~~~~----r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~ 186 (876)
T PRK13767 111 IREIAKERGEELPEIRVAIRTGDTSSYE----KQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAE 186 (876)
T ss_pred HHHHHHhcCCCcCCeeEEEEcCCCCHHH----HHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhcc
Confidence 1 1 567888888865432 1122234789999999999877765432 468899999999999985
Q ss_pred CCh---HHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceee-e
Q 000379 183 NHP---YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESC-R 258 (1604)
Q Consensus 183 ~~~---~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~-~ 258 (1604)
..- +...+..+.......++++|||||+.. ...+..++....... .+++.... .
T Consensus 187 ~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-------------~~~va~~L~~~~~~~---------~~r~~~iv~~ 244 (876)
T PRK13767 187 NKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-------------LEEVAKFLVGYEDDG---------EPRDCEIVDA 244 (876)
T ss_pred CccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-------------HHHHHHHhcCccccC---------CCCceEEEcc
Confidence 421 222333333333456899999999642 123333332210000 00000000 0
Q ss_pred eccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000379 259 FYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338 (1604)
Q Consensus 259 ~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~ 338 (1604)
.+... . .+. +. .+ ...+..
T Consensus 245 ~~~k~-~---~i~--v~------~p------------~~~l~~------------------------------------- 263 (876)
T PRK13767 245 RFVKP-F---DIK--VI------SP------------VDDLIH------------------------------------- 263 (876)
T ss_pred CCCcc-c---eEE--Ee------cc------------Cccccc-------------------------------------
Confidence 00000 0 000 00 00 000000
Q ss_pred HhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEE
Q 000379 339 KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCI 418 (1604)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~I 418 (1604)
. . ...........|.+++.. ..++|
T Consensus 264 -----------------------------------~--------~-------~~~~~~~l~~~L~~~i~~-----~~~~L 288 (876)
T PRK13767 264 -----------------------------------T--------P-------AEEISEALYETLHELIKE-----HRTTL 288 (876)
T ss_pred -----------------------------------c--------c-------cchhHHHHHHHHHHHHhc-----CCCEE
Confidence 0 0 000000111223333332 23799
Q ss_pred EEEchHHHHHHHHHHHhhCCC--CCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEE
Q 000379 419 IFVERIIAAKVVERFVKKVPF--LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496 (1604)
Q Consensus 419 IFv~~r~ta~~L~~~L~~~~~--~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlV 496 (1604)
|||+++..|+.++..|..... ..+..+..+||+ |++++|..++++|++|++++||||+++++|||+|++++|
T Consensus 289 VF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~------ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~V 362 (876)
T PRK13767 289 IFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSS------LSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLV 362 (876)
T ss_pred EEeCCHHHHHHHHHHHHHhchhhccccceeeeeCC------CCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEE
Confidence 999999999999998876321 123568888998 999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHhhhhcccC
Q 000379 497 IRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 497 I~fD~p~s~~syiQr~GRA~R~g 519 (1604)
|+||.|.+..+|+||+|||||.+
T Consensus 363 I~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 363 VLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred EEeCCCCCHHHHHHhcccCCCCC
Confidence 99999999999999999999874
No 38
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.4e-31 Score=343.99 Aligned_cols=313 Identities=19% Similarity=0.272 Sum_probs=223.9
Q ss_pred CCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEE
Q 000379 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
++|++|.++++.++ ++|+++++|||+|||++|.+++.. ..+.++|++|+++|+.||.+.++. .++.+..
T Consensus 13 ~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---------~~g~~lVisPl~sL~~dq~~~l~~-~gi~~~~ 82 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---------LKGLTVVISPLISLMKDQVDQLRA-AGVAAAY 82 (591)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---------cCCcEEEEcCCHHHHHHHHHHHHH-cCCcEEE
Confidence 58999999999998 599999999999999999887642 123589999999999999999986 5888888
Q ss_pred EECCCCCCccchhHHHHh-cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-ChHHHH---HHHHHhhcC
Q 000379 124 YYGAKGVDEWDSQCWQKE-INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKI---MKEFYHKSD 198 (1604)
Q Consensus 124 ~~G~~~~~~~~~~~w~~~-~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~i---m~~~~~~~~ 198 (1604)
++|+...+.. ...+... ....+|+++||+.|........+...++++|||||||++... |.+... +..+....+
T Consensus 83 ~~s~~~~~~~-~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~ 161 (591)
T TIGR01389 83 LNSTLSAKEQ-QDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP 161 (591)
T ss_pred EeCCCCHHHH-HHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCC
Confidence 8887654432 2223332 356899999999997654444556678999999999999754 333322 222222333
Q ss_pred CCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhh
Q 000379 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278 (1604)
Q Consensus 199 ~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~ 278 (1604)
..| +++||||+... ....+...++.. .+......++....
T Consensus 162 ~~~-vi~lTAT~~~~-----------~~~~i~~~l~~~---------------~~~~~~~~~~r~nl------------- 201 (591)
T TIGR01389 162 QVP-RIALTATADAE-----------TRQDIRELLRLA---------------DANEFITSFDRPNL------------- 201 (591)
T ss_pred CCC-EEEEEeCCCHH-----------HHHHHHHHcCCC---------------CCCeEecCCCCCCc-------------
Confidence 444 99999997532 122333333210 00000000000000
Q ss_pred hhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHH
Q 000379 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358 (1604)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1604)
.|
T Consensus 202 ----------------~~-------------------------------------------------------------- 203 (591)
T TIGR01389 202 ----------------RF-------------------------------------------------------------- 203 (591)
T ss_pred ----------------EE--------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCC
Q 000379 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438 (1604)
Q Consensus 359 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~ 438 (1604)
. . .....+...+.+++.... +.++||||+++..++.+++.|..
T Consensus 204 ----------------------~--------v--~~~~~~~~~l~~~l~~~~---~~~~IIf~~sr~~~e~la~~L~~-- 246 (591)
T TIGR01389 204 ----------------------S--------V--VKKNNKQKFLLDYLKKHR---GQSGIIYASSRKKVEELAERLES-- 246 (591)
T ss_pred ----------------------E--------E--EeCCCHHHHHHHHHHhcC---CCCEEEEECcHHHHHHHHHHHHh--
Confidence 0 0 000123334444444322 35799999999999999999987
Q ss_pred CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhccc
Q 000379 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518 (1604)
Q Consensus 439 ~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~ 518 (1604)
.++.+..+||. |+.++|..++++|++|+++|||||+++++|||+|+++.||+||+|.|..+|+|++|||||.
T Consensus 247 --~g~~~~~~H~~------l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~ 318 (591)
T TIGR01389 247 --QGISALAYHAG------LSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRD 318 (591)
T ss_pred --CCCCEEEEECC------CCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCC
Confidence 47888999998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc--eEEEEEeccCH
Q 000379 519 NS--QFILMLERGNL 531 (1604)
Q Consensus 519 gs--~~i~~v~~~~~ 531 (1604)
|. ..++++...+.
T Consensus 319 G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 319 GLPAEAILLYSPADI 333 (591)
T ss_pred CCCceEEEecCHHHH
Confidence 84 46666665443
No 39
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.3e-31 Score=330.94 Aligned_cols=324 Identities=22% Similarity=0.266 Sum_probs=216.9
Q ss_pred CCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC--
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF-- 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~-- 119 (1604)
.++||+||.+++..+++ +++|+++|||+|||+++..+++..+. ..+.++||||||++|+.||.+.++++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~-----~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLE-----NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh-----cCCCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 47899999999988875 77999999999999998877665544 12337999999999999999999987642
Q ss_pred -cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcC
Q 000379 120 -EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1604)
Q Consensus 120 -~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1604)
.+..+.|+.... ...+|+|+|+|.+.+.... .++++++||+|||||+... .+..++..+ +
T Consensus 187 ~~~~~i~~g~~~~-----------~~~~I~VaT~qsl~~~~~~---~~~~~~~iIvDEaH~~~~~-~~~~il~~~----~ 247 (501)
T PHA02558 187 EAMHKIYSGTAKD-----------TDAPIVVSTWQSAVKQPKE---WFDQFGMVIVDECHLFTGK-SLTSIITKL----D 247 (501)
T ss_pred cceeEEecCcccC-----------CCCCEEEeeHHHHhhchhh---hccccCEEEEEchhcccch-hHHHHHHhh----h
Confidence 344455543221 2579999999999764422 3578999999999999764 466666543 3
Q ss_pred CCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhh-hccCCcceeeeeccCCCccccchhhhhhhh
Q 000379 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1604)
Q Consensus 199 ~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~-~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~ 277 (1604)
+.++++||||||..+.. ....+...++...+.++-.+.+. .+...+....+..... .
T Consensus 248 ~~~~~lGLTATp~~~~~---------~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~-~------------ 305 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKA---------NILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYP-D------------ 305 (501)
T ss_pred ccceEEEEeccCCCccc---------cHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCC-H------------
Confidence 45789999999964321 12223444554433332111111 1111111000000000 0
Q ss_pred hhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000379 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1604)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1604)
.... .+. -+.|.
T Consensus 306 -----------------------~~~~----~~~------------~~~~~----------------------------- 317 (501)
T PHA02558 306 -----------------------EDRV----KLK------------GEDYQ----------------------------- 317 (501)
T ss_pred -----------------------HHhh----hhc------------ccchH-----------------------------
Confidence 0000 000 00000
Q ss_pred HHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC
Q 000379 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1604)
Q Consensus 358 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~ 437 (1604)
+....+. ....+...+.+++.... ..+.+++||++++.+++.|++.|..
T Consensus 318 -----~~~~~l~------------------------~~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~- 366 (501)
T PHA02558 318 -----EEIKYIT------------------------SHTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKK- 366 (501)
T ss_pred -----HHHHHHh------------------------ccHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHH-
Confidence 0000000 00112222333332222 2334788988999999999999988
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEc-cccccccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFAT-DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT-~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
.+.++..+||. |+.++|..+++.|++|+..+|||| ++++||+|+|++++||.++++.+...|+||+||++
T Consensus 367 ---~g~~v~~i~G~------~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~ 437 (501)
T PHA02558 367 ---VYDKVYYVSGE------VDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVL 437 (501)
T ss_pred ---cCCCEEEEeCC------CCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccc
Confidence 36789999999 899999999999999999999998 89999999999999999999999999999999999
Q ss_pred ccCc
Q 000379 517 QHNS 520 (1604)
Q Consensus 517 R~gs 520 (1604)
|.+.
T Consensus 438 R~~~ 441 (501)
T PHA02558 438 RKHG 441 (501)
T ss_pred cCCC
Confidence 9874
No 40
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.6e-31 Score=345.01 Aligned_cols=445 Identities=16% Similarity=0.164 Sum_probs=247.8
Q ss_pred CCCCCCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 41 SINFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
...+.|.|||.++...+.. .++|+++++|.|||..|++++.+++. .+..+++|||||+ .|+.||..++.+.+
T Consensus 148 ~~~~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~----~g~~~rvLIVvP~-sL~~QW~~El~~kF 222 (956)
T PRK04914 148 GARASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLL----TGRAERVLILVPE-TLQHQWLVEMLRRF 222 (956)
T ss_pred cCCCCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHH----cCCCCcEEEEcCH-HHHHHHHHHHHHHh
Confidence 4568899999999988754 67999999999999999999888765 3455679999998 99999999999989
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHH-HhcCcCccceeEEEEeCcccccCC----ChHHHHHHH
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL-RKAFLSLDIVCFIVIDECHHATGN----HPYTKIMKE 192 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l-~~~~~~l~~i~llI~DEaH~~~~~----~~~~~im~~ 192 (1604)
++.+.++.++.....+... ...+...+++|+|++.+...- ....+.-..|++||+|||||+... ..-.+.+..
T Consensus 223 ~l~~~i~~~~~~~~~~~~~--~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~ 300 (956)
T PRK04914 223 NLRFSLFDEERYAEAQHDA--DNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQ 300 (956)
T ss_pred CCCeEEEcCcchhhhcccc--cCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHH
Confidence 9888777655322111000 012236789999999886521 111222347899999999999731 122223332
Q ss_pred HHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhh----hccCCcceeeeeccCCCcccc
Q 000379 193 FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEME----VFVPSAKESCRFYDQSKFCGS 268 (1604)
Q Consensus 193 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~----~~~~~p~e~~~~y~~~~~~~~ 268 (1604)
+ ....+++|+|||||+.++ .+.+-.+-+.+++..+.. ...+. .|.+-..-.....+.... ..
T Consensus 301 L---a~~~~~~LLLTATP~q~~--------~~e~falL~lLdP~~f~~--~~~F~~e~~~~~~~a~~v~~l~~~~~~-~~ 366 (956)
T PRK04914 301 L---AEVIPGVLLLTATPEQLG--------QESHFARLRLLDPDRFHD--YEAFVEEQQQYRPVADAVQALLAGEKL-SD 366 (956)
T ss_pred H---hhccCCEEEEEcCcccCC--------cHHHHHhhhhhCCCcCCC--HHHHHHHHHhhHHHHHHHHHHhcCCcC-CH
Confidence 2 235689999999999864 122334446666654422 11111 010000000000000000 00
Q ss_pred chhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHH-hhh
Q 000379 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLI-----CAYEAVKICLEK-VLK 342 (1604)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~-----~~~~~~~~~~~~-~~~ 342 (1604)
.....+...... ..+..+...+...-..-......+... .++..|.- .....+...... ...
T Consensus 367 ~~~~~l~~ll~~--~~~~~l~~~~~~~~~~~~~~~~~~i~~----------L~d~hg~~rvm~RntR~~v~~fp~R~~~~ 434 (956)
T PRK04914 367 DALNALGELLGE--QDIEPLLQAANSDSEEAQAARQELISE----------LLDRHGTGRVLFRNTRAAVKGFPKRELHP 434 (956)
T ss_pred HHHHHHHHHhcc--cchhHHHhhhcccccccHHHHHHHHHH----------HHhhcCcceEEEeccHHhhcCCCcCceeE
Confidence 000000000000 000000000000000000000000000 01111100 000000000000 000
Q ss_pred h-HHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEE
Q 000379 343 A-QEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFV 421 (1604)
Q Consensus 343 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv 421 (1604)
. ......|.... .. .........+.. .. ... .. .........++|+..|.++|+... ..|+||||
T Consensus 435 ~~l~~~~~y~~~~---~~---~~~~~~~~~l~p-e~-~~~-~~--~~~~~~~~~d~Ki~~L~~~L~~~~---~~KvLVF~ 500 (956)
T PRK04914 435 IPLPLPEQYQTAI---KV---SLEARARDMLYP-EQ-IYQ-EF--EDNATWWNFDPRVEWLIDFLKSHR---SEKVLVIC 500 (956)
T ss_pred eecCCCHHHHHHH---HH---hHHHHHHhhcCH-HH-HHH-HH--hhhhhccccCHHHHHHHHHHHhcC---CCeEEEEe
Confidence 0 00000000000 00 000000000000 00 000 00 000011234689999999998653 56999999
Q ss_pred chHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC--CceEEEEccccccccCCCCccEEEEc
Q 000379 422 ERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG--KVNLLFATDVIEEGMHVPNCSYVIRF 499 (1604)
Q Consensus 422 ~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g--~~~iLIaT~vleeGIDip~~nlVI~f 499 (1604)
+++.++..|.+.|... .++++..+||+ |+..+|.++++.|+++ .++|||||+++++|+|++.|++||+|
T Consensus 501 ~~~~t~~~L~~~L~~~---~Gi~~~~ihG~------~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInf 571 (956)
T PRK04914 501 AKAATALQLEQALRER---EGIRAAVFHEG------MSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLF 571 (956)
T ss_pred CcHHHHHHHHHHHhhc---cCeeEEEEECC------CCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEe
Confidence 9999999999999642 47899999998 8999999999999985 59999999999999999999999999
Q ss_pred CCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHHHHHHHHHHHH
Q 000379 500 DLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 500 D~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
|+|||+..|+||+||++|.|++ .++++..+.. .+.+.+++.+
T Consensus 572 DlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~--~e~i~~~~~~ 617 (956)
T PRK04914 572 DLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTA--QERLFRWYHE 617 (956)
T ss_pred cCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCH--HHHHHHHHhh
Confidence 9999999999999999999985 2233334443 3455555544
No 41
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.4e-31 Score=303.72 Aligned_cols=334 Identities=17% Similarity=0.237 Sum_probs=247.2
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHh-hCCCCeEEEEEecChhhHHHHHHHHHhhc----
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIK-SNGFKKLIIFLAPTVHLVHQQYDVIRVHT---- 117 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~-~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---- 117 (1604)
-+..+.|...+..++ ++|+++.+-||+|||+++++++.+++.... ....+-.++|+|||++|+.|.+.+.+..+
T Consensus 103 ~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~ 182 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHE 182 (543)
T ss_pred cchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCC
Confidence 457899999998887 599999999999999999998888775333 23345569999999999999999988754
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcC-cCccceeEEEEeCcccccCCChHHHHHHHHHhh
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF-LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~-~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
++.+..+.||.+... .-++....++|+|+||++|++.+.+.. .-...+..+|+|||+|+..- .|..-|......
T Consensus 183 ~~~v~~viGG~~~~~----e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~-GF~~di~~Ii~~ 257 (543)
T KOG0342|consen 183 SITVGIVIGGNNFSV----EADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDI-GFEEDVEQIIKI 257 (543)
T ss_pred CcceEEEeCCccchH----HHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhc-ccHHHHHHHHHh
Confidence 677999999876432 123344589999999999999998743 23455689999999999865 677777777777
Q ss_pred cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhc-CCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTL-DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l-~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
.+...+.+++|||-. ..+++|.... .. .| ..+.......
T Consensus 258 lpk~rqt~LFSAT~~------------~kV~~l~~~~L~~----------------d~--~~v~~~d~~~---------- 297 (543)
T KOG0342|consen 258 LPKQRQTLLFSATQP------------SKVKDLARGALKR----------------DP--VFVNVDDGGE---------- 297 (543)
T ss_pred ccccceeeEeeCCCc------------HHHHHHHHHhhcC----------------Cc--eEeecCCCCC----------
Confidence 778889999999943 2344444321 10 00 0000000000
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
T Consensus 298 -------------------------------------------------------------------------------- 297 (543)
T KOG0342|consen 298 -------------------------------------------------------------------------------- 297 (543)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
.+..+.+++.. ++ .....++..|..+|+++.. ..++||||.+-+.+..++.+|.
T Consensus 298 ------~~The~l~Qgy------vv------------~~~~~~f~ll~~~LKk~~~--~~KiiVF~sT~~~vk~~~~lL~ 351 (543)
T KOG0342|consen 298 ------RETHERLEQGY------VV------------APSDSRFSLLYTFLKKNIK--RYKIIVFFSTCMSVKFHAELLN 351 (543)
T ss_pred ------cchhhcccceE------Ee------------ccccchHHHHHHHHHHhcC--CceEEEEechhhHHHHHHHHHh
Confidence 00000000000 00 0112346777788877643 2799999999999999999998
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhh
Q 000379 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1604)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA 515 (1604)
. ..+.|..+||. +++..|..+...|++.+.-|||||+|+++|+|+|+++.||+||+|.++.+||||+||+
T Consensus 352 ~----~dlpv~eiHgk------~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRT 421 (543)
T KOG0342|consen 352 Y----IDLPVLEIHGK------QKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRT 421 (543)
T ss_pred h----cCCchhhhhcC------CcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccc
Confidence 6 36889999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCc--eEEEEEeccCHHHHHHHH
Q 000379 516 RQHNS--QFILMLERGNLKQRNKLF 538 (1604)
Q Consensus 516 ~R~gs--~~i~~v~~~~~~~~~~l~ 538 (1604)
+|.|. +.++++.+.+..-.+.++
T Consensus 422 aR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 422 AREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred cccCCCceEEEEeChhHHHHHHHHh
Confidence 99885 477777655444333333
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=99.98 E-value=1.4e-30 Score=341.72 Aligned_cols=324 Identities=20% Similarity=0.264 Sum_probs=227.2
Q ss_pred CCCCcHHHHHHHHHh-h-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh--cC
Q 000379 43 NFIPRIYQLKVFEVA-K-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH--TD 118 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~-l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~--~~ 118 (1604)
..+|+|+|.++++.. . ++|+++++|||+|||++|.++|...+. +++++||++|+++|+.|+++.++++ ++
T Consensus 21 ~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~------~~~kal~i~P~raLa~q~~~~~~~~~~~g 94 (737)
T PRK02362 21 IEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA------RGGKALYIVPLRALASEKFEEFERFEELG 94 (737)
T ss_pred CCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh------cCCcEEEEeChHHHHHHHHHHHHHhhcCC
Confidence 357999999999974 3 689999999999999999998877654 3456999999999999999999975 37
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCCh---HHHHHHHHHh
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP---YTKIMKEFYH 195 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~---~~~im~~~~~ 195 (1604)
+++..++|+...+. ..+..++|+|+||+.+..+++++...+.++++||+||||++..... +..++..+.
T Consensus 95 ~~v~~~tGd~~~~~-------~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~- 166 (737)
T PRK02362 95 VRVGISTGDYDSRD-------EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLR- 166 (737)
T ss_pred CEEEEEeCCcCccc-------cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHH-
Confidence 89999999865432 2245789999999999988887766688999999999999865321 222233221
Q ss_pred hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
.....+|++|||||+.+ ..++..++++..+....+ +.|....+.+.......
T Consensus 167 ~~~~~~qii~lSATl~n-------------~~~la~wl~~~~~~~~~r-------pv~l~~~v~~~~~~~~~-------- 218 (737)
T PRK02362 167 RLNPDLQVVALSATIGN-------------ADELADWLDAELVDSEWR-------PIDLREGVFYGGAIHFD-------- 218 (737)
T ss_pred hcCCCCcEEEEcccCCC-------------HHHHHHHhCCCcccCCCC-------CCCCeeeEecCCeeccc--------
Confidence 23356899999999752 245667777543322211 11111111111000000
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
..
T Consensus 219 -------------------------~~----------------------------------------------------- 220 (737)
T PRK02362 219 -------------------------DS----------------------------------------------------- 220 (737)
T ss_pred -------------------------cc-----------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
...+ ......+.+..+.+.+. .+.++||||++|..++.++..|.
T Consensus 221 -------------~~~~------------------~~~~~~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~ 264 (737)
T PRK02362 221 -------------QREV------------------EVPSKDDTLNLVLDTLE-----EGGQCLVFVSSRRNAEGFAKRAA 264 (737)
T ss_pred -------------cccC------------------CCccchHHHHHHHHHHH-----cCCCeEEEEeCHHHHHHHHHHHH
Confidence 0000 00000122333333332 23479999999999888877765
Q ss_pred hCCC--C----------------------C--------CeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccc
Q 000379 436 KVPF--L----------------------T--------HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDV 483 (1604)
Q Consensus 436 ~~~~--~----------------------~--------~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~v 483 (1604)
.... + . ...++++||+ |++.+|..+++.|++|.++|||||++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHag------l~~~eR~~ve~~Fr~G~i~VLvaT~t 338 (737)
T PRK02362 265 SALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAG------LSREHRELVEDAFRDRLIKVISSTPT 338 (737)
T ss_pred HHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCC------CCHHHHHHHHHHHHcCCCeEEEechh
Confidence 4210 0 0 0246777777 99999999999999999999999999
Q ss_pred cccccCCCCccEEEE----cC-----CCCCHHHHHHHhhhhcccCc----eEEEEEec
Q 000379 484 IEEGMHVPNCSYVIR----FD-----LPKTVSSYIQSRGRARQHNS----QFILMLER 528 (1604)
Q Consensus 484 leeGIDip~~nlVI~----fD-----~p~s~~syiQr~GRA~R~gs----~~i~~v~~ 528 (1604)
+++|||+|+.++||+ || .|.+..+|.||+|||||.|. ..++++..
T Consensus 339 la~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 339 LAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred hhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 999999999999997 87 58899999999999999883 45666643
No 43
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=1.7e-31 Score=293.16 Aligned_cols=340 Identities=19% Similarity=0.248 Sum_probs=240.8
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHH---HHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~---~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
..-+|.|+|.+|++.++ +.++|.++.||+|||++++++-.-++. ..........+|++.||++|+.|...+..++.
T Consensus 239 GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys 318 (629)
T KOG0336|consen 239 GFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS 318 (629)
T ss_pred cCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh
Confidence 34579999999999988 599999999999999999985332221 11123455679999999999999988877654
Q ss_pred --CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHh
Q 000379 118 --DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1604)
Q Consensus 118 --~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~ 195 (1604)
+++...++|+.+-+. .-..+-.+.+|+++||+.|.++...+.+++..+.+||+|||+++++-.---+|++-++.
T Consensus 319 yng~ksvc~ygggnR~e----qie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilld 394 (629)
T KOG0336|consen 319 YNGLKSVCVYGGGNRNE----QIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLD 394 (629)
T ss_pred hcCcceEEEecCCCchh----HHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhh
Confidence 788888888876554 23445568999999999999999999999999999999999999865333344443332
Q ss_pred hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
..+..+.+..|||=. ..++.|.. .|...|.... ........
T Consensus 395 -iRPDRqtvmTSATWP------------~~VrrLa~----------------sY~Kep~~v~--vGsLdL~a-------- 435 (629)
T KOG0336|consen 395 -IRPDRQTVMTSATWP------------EGVRRLAQ----------------SYLKEPMIVY--VGSLDLVA-------- 435 (629)
T ss_pred -cCCcceeeeecccCc------------hHHHHHHH----------------HhhhCceEEE--ecccceee--------
Confidence 223446677778822 11222221 1222221110 00000000
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
T Consensus 436 -------------------------------------------------------------------------------- 435 (629)
T KOG0336|consen 436 -------------------------------------------------------------------------------- 435 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
.+.+.+ .+-....+.|+...-.++.... .+.++||||.++..|+-|..-|.
T Consensus 436 ---------~~sVkQ------------------~i~v~~d~~k~~~~~~f~~~ms--~ndKvIiFv~~K~~AD~LSSd~~ 486 (629)
T KOG0336|consen 436 ---------VKSVKQ------------------NIIVTTDSEKLEIVQFFVANMS--SNDKVIIFVSRKVMADHLSSDFC 486 (629)
T ss_pred ---------eeeeee------------------eEEecccHHHHHHHHHHHHhcC--CCceEEEEEechhhhhhccchhh
Confidence 000000 0000111345544444445443 45699999999999887765443
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhh
Q 000379 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1604)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA 515 (1604)
+.++....+||+ -++.+|+..++.|++|+++|||||+++++|||+|++.+|++||.|.+...|+||+||+
T Consensus 487 ----l~gi~~q~lHG~------r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrt 556 (629)
T KOG0336|consen 487 ----LKGISSQSLHGN------REQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRT 556 (629)
T ss_pred ----hcccchhhccCC------hhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhccc
Confidence 368899999998 5799999999999999999999999999999999999999999999999999999999
Q ss_pred cccCce--EEEEEeccCHHHHHHHHHHHHH
Q 000379 516 RQHNSQ--FILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 516 ~R~gs~--~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
||.|.+ .+.|+...+..-.+.|-+++++
T Consensus 557 GRaGr~G~sis~lt~~D~~~a~eLI~ILe~ 586 (629)
T KOG0336|consen 557 GRAGRTGTSISFLTRNDWSMAEELIQILER 586 (629)
T ss_pred ccCCCCcceEEEEehhhHHHHHHHHHHHHH
Confidence 999965 7778877666555555555543
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=2.3e-30 Score=336.62 Aligned_cols=318 Identities=19% Similarity=0.263 Sum_probs=219.6
Q ss_pred CCCCCcHHHHHHHHHhhc-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 42 INFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
..++|+++|.++++.++. .|.++++|||+|||.+|+.++...+. .+++++|||||++|+.|+++.++
T Consensus 448 ~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~------~g~qvlvLvPT~~LA~Q~~~~f~ 521 (926)
T TIGR00580 448 FPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL------DGKQVAVLVPTTLLAQQHFETFK 521 (926)
T ss_pred CCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH------hCCeEEEEeCcHHHHHHHHHHHH
Confidence 467899999999999974 58999999999999999998776654 23579999999999999999999
Q ss_pred hhc---CCcEEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHH
Q 000379 115 VHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIM 190 (1604)
Q Consensus 115 ~~~---~~~v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im 190 (1604)
+.+ ++++..++|..+.... .+.+.... +..+|||+||..+ +..+.+.++++||+||+|+.... ....
T Consensus 522 ~~~~~~~i~v~~Lsg~~~~~e~-~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfgv~--~~~~- 592 (926)
T TIGR00580 522 ERFANFPVTIELLSRFRSAKEQ-NEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFGVK--QKEK- 592 (926)
T ss_pred HHhccCCcEEEEEeccccHHHH-HHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccchh--HHHH-
Confidence 865 5778888887654332 12233222 3589999999644 34567889999999999997321 2222
Q ss_pred HHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHH-HHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccc
Q 000379 191 KEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQIS-ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1604)
Q Consensus 191 ~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~-~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~ 269 (1604)
+......+++|+|||||+... +. .+....+..+.. ..|.... .
T Consensus 593 ---L~~~~~~~~vL~~SATpiprt-----------l~~~l~g~~d~s~I~-----------~~p~~R~------~----- 636 (926)
T TIGR00580 593 ---LKELRTSVDVLTLSATPIPRT-----------LHMSMSGIRDLSIIA-----------TPPEDRL------P----- 636 (926)
T ss_pred ---HHhcCCCCCEEEEecCCCHHH-----------HHHHHhcCCCcEEEe-----------cCCCCcc------c-----
Confidence 223346789999999997421 10 000001110000 0000000 0
Q ss_pred hhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHH
Q 000379 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349 (1604)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1604)
+... +..
T Consensus 637 ----V~t~------------------v~~--------------------------------------------------- 643 (926)
T TIGR00580 637 ----VRTF------------------VME--------------------------------------------------- 643 (926)
T ss_pred ----eEEE------------------EEe---------------------------------------------------
Confidence 0000 000
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHH-HHHHHHHHhhCCCCCcEEEEEEchHHHHH
Q 000379 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKL-HELLQLFLSFGKSTQVLCIIFVERIIAAK 428 (1604)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~-~~L~~lL~~~~~~~~~~~IIFv~~r~ta~ 428 (1604)
.....+ ..+.+.+. .+.+++|||+++.+++
T Consensus 644 --------------------------------------------~~~~~i~~~i~~el~-----~g~qv~if~n~i~~~e 674 (926)
T TIGR00580 644 --------------------------------------------YDPELVREAIRRELL-----RGGQVFYVHNRIESIE 674 (926)
T ss_pred --------------------------------------------cCHHHHHHHHHHHHH-----cCCeEEEEECCcHHHH
Confidence 000000 00111111 2347999999999999
Q ss_pred HHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCC-CHHH
Q 000379 429 VVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK-TVSS 507 (1604)
Q Consensus 429 ~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~-s~~s 507 (1604)
.+++.|+.. ++++++..+||. |++++|.+++++|++|+++|||||+++|+|||+|++++||++|.+. +..+
T Consensus 675 ~l~~~L~~~--~p~~~v~~lHG~------m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~ 746 (926)
T TIGR00580 675 KLATQLREL--VPEARIAIAHGQ------MTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQ 746 (926)
T ss_pred HHHHHHHHh--CCCCeEEEecCC------CCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHH
Confidence 999999874 246789999999 9999999999999999999999999999999999999999999875 6789
Q ss_pred HHHHhhhhcccCce--EEEEEeccC---HHHHHHHHHH
Q 000379 508 YIQSRGRARQHNSQ--FILMLERGN---LKQRNKLFDI 540 (1604)
Q Consensus 508 yiQr~GRA~R~gs~--~i~~v~~~~---~~~~~~l~~~ 540 (1604)
|.||+||+||.|.+ +++++...+ ....++|+.+
T Consensus 747 l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~ 784 (926)
T TIGR00580 747 LYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAI 784 (926)
T ss_pred HHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHH
Confidence 99999999999865 445554332 3344445433
No 45
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.4e-31 Score=301.84 Aligned_cols=362 Identities=19% Similarity=0.277 Sum_probs=242.0
Q ss_pred CCCCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHH----------HHhhCCCCeEEEEEecChhhHHHH
Q 000379 42 INFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQ----------AIKSNGFKKLIIFLAPTVHLVHQQ 109 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~----------~~~~~~~~~~vl~LvPt~~Lv~Q~ 109 (1604)
....|.++|.-.++.+.. .+++..++||||||+++.++|.+-+. .....+.++..||++||++|+.|.
T Consensus 200 gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV 279 (731)
T KOG0347|consen 200 GFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQV 279 (731)
T ss_pred CCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHH
Confidence 455799999999998874 79999999999999999998877321 122345566799999999999999
Q ss_pred HHHHHh---hcCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCc---CccceeEEEEeCcccccCC
Q 000379 110 YDVIRV---HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL---SLDIVCFIVIDECHHATGN 183 (1604)
Q Consensus 110 ~~~i~~---~~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~---~l~~i~llI~DEaH~~~~~ 183 (1604)
.+.|.. .+++++..++||..+..+. +-+-..++|||+||++|+.++..+.. ++.+++.||+||+++++..
T Consensus 280 ~~Hl~ai~~~t~i~v~si~GGLavqKQq----RlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvek 355 (731)
T KOG0347|consen 280 KQHLKAIAEKTQIRVASITGGLAVQKQQ----RLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEK 355 (731)
T ss_pred HHHHHHhccccCeEEEEeechhHHHHHH----HHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhh
Confidence 888776 5689999999998765421 22224799999999999999987644 5678899999999999976
Q ss_pred ChH---HHHHHHHHh-hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeee
Q 000379 184 HPY---TKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF 259 (1604)
Q Consensus 184 ~~~---~~im~~~~~-~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~ 259 (1604)
.-| ..+++.+.. +.....+.|-+|||..-... ..+...... ..
T Consensus 356 ghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~--------~~~~~~~k~----------------~~--------- 402 (731)
T KOG0347|consen 356 GHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQ--------QPLSSSRKK----------------KD--------- 402 (731)
T ss_pred ccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhc--------ChhHHhhhc----------------cc---------
Confidence 443 334443321 12234678999999532110 000000000 00
Q ss_pred ccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000379 260 YDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339 (1604)
Q Consensus 260 y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~ 339 (1604)
. + ......+...+..+|....-..+.
T Consensus 403 -------------------------------------k-----------~-~~~~~kiq~Lmk~ig~~~kpkiiD----- 428 (731)
T KOG0347|consen 403 -------------------------------------K-----------E-DELNAKIQHLMKKIGFRGKPKIID----- 428 (731)
T ss_pred -------------------------------------h-----------h-hhhhHHHHHHHHHhCccCCCeeEe-----
Confidence 0 0 000001111111222110000000
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEE
Q 000379 340 VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCII 419 (1604)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~II 419 (1604)
...... ....+.+....+ ....|-..|.-+|..| .+++||
T Consensus 429 ---~t~q~~---------------ta~~l~Es~I~C------------------~~~eKD~ylyYfl~ry----PGrTlV 468 (731)
T KOG0347|consen 429 ---LTPQSA---------------TASTLTESLIEC------------------PPLEKDLYLYYFLTRY----PGRTLV 468 (731)
T ss_pred ---cCcchh---------------HHHHHHHHhhcC------------------CccccceeEEEEEeec----CCceEE
Confidence 000000 000000000000 0011222222223333 358999
Q ss_pred EEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEc
Q 000379 420 FVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499 (1604)
Q Consensus 420 Fv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~f 499 (1604)
|||....+..|+-+|..+ ++.+..+|.. |.+++|...+++|++...-|||||+|+++|||||.+.+||||
T Consensus 469 F~NsId~vKRLt~~L~~L----~i~p~~LHA~------M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHY 538 (731)
T KOG0347|consen 469 FCNSIDCVKRLTVLLNNL----DIPPLPLHAS------MIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHY 538 (731)
T ss_pred EechHHHHHHHHHHHhhc----CCCCchhhHH------HHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEe
Confidence 999999999999999885 6778889998 999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhhhhcccCce--EEEEEeccCHHHHHHHHHHHHHH
Q 000379 500 DLPKTVSSYIQSRGRARQHNSQ--FILMLERGNLKQRNKLFDIIRSE 544 (1604)
Q Consensus 500 D~p~s~~syiQr~GRA~R~gs~--~i~~v~~~~~~~~~~l~~~~~~e 544 (1604)
-.|.+..-|+||.||+.|+++. .++|+.+++.....+|.+-+++.
T Consensus 539 qVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 539 QVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKK 585 (731)
T ss_pred ecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhc
Confidence 9999999999999999999986 56667777777777777666543
No 46
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.8e-30 Score=295.01 Aligned_cols=362 Identities=19% Similarity=0.279 Sum_probs=236.7
Q ss_pred CCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHh---hCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~---~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
+-.|+..|..+++.+++ ++++|-++||||||++|+++|.+.++... .+..+.-+||||||++||.|.++.+.+...
T Consensus 157 i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~ 236 (708)
T KOG0348|consen 157 ISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLK 236 (708)
T ss_pred cCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhc
Confidence 45689999999999985 99999999999999999999988876433 244567799999999999999999998653
Q ss_pred ----CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHh-cCcCccceeEEEEeCcccccCC---ChHHHHH
Q 000379 119 ----FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGN---HPYTKIM 190 (1604)
Q Consensus 119 ----~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~-~~~~l~~i~llI~DEaH~~~~~---~~~~~im 190 (1604)
+-.+.+.||.... .....+..+.+|+|+||++|++.|.+ ..+.++++.+|||||++++..- ....+|+
T Consensus 237 ~~hWIVPg~lmGGEkkK----SEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il 312 (708)
T KOG0348|consen 237 PFHWIVPGVLMGGEKKK----SEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQIL 312 (708)
T ss_pred CceEEeeceeecccccc----cHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHH
Confidence 3344455554322 22344556899999999999999987 4678899999999999999743 2344555
Q ss_pred HHHHhh----c--CC---CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhh-cCCceeeccchhhhhhccCCcceeeeec
Q 000379 191 KEFYHK----S--DN---KPKVFGMTASPVVRKGVSSAMDCEGQISELEST-LDSQVFTIEDKTEMEVFVPSAKESCRFY 260 (1604)
Q Consensus 191 ~~~~~~----~--~~---~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~-l~~~i~t~~~~~~l~~~~~~p~e~~~~y 260 (1604)
+..-.. . +. .-+.+++|||...+ +..|..+ |+..++...+.... ... |+..
T Consensus 313 ~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~------------V~rLa~~sLkDpv~I~ld~s~~-~~~--p~~~---- 373 (708)
T KOG0348|consen 313 KAVHSIQNAECKDPKLPHQLQNMLLSATLTDG------------VNRLADLSLKDPVYISLDKSHS-QLN--PKDK---- 373 (708)
T ss_pred HHHhhccchhcccccccHHHHhHhhhhhhHHH------------HHHHhhccccCceeeeccchhh-hcC--cchh----
Confidence 543110 0 11 23458999996532 3333322 22222221111000 000 0000
Q ss_pred cCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 000379 261 DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV 340 (1604)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~ 340 (1604)
.+++ .++ -.+. + .++.
T Consensus 374 ------------a~~e----v~~----------~~~~---~---------------------~l~~-------------- 389 (708)
T KOG0348|consen 374 ------------AVQE----VDD----------GPAG---D---------------------KLDS-------------- 389 (708)
T ss_pred ------------hhhh----cCC----------cccc---c---------------------cccc--------------
Confidence 0000 000 0000 0 0000
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHH--HHHHHHHHH-hhCCCCCcEE
Q 000379 341 LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTK--LHELLQLFL-SFGKSTQVLC 417 (1604)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K--~~~L~~lL~-~~~~~~~~~~ 417 (1604)
+ .+-+.+.+. ...+-+| +-.|..+|. ........++
T Consensus 390 ---------~------------~iPeqL~qr--------------------y~vVPpKLRLV~Laa~L~~~~k~~~~qk~ 428 (708)
T KOG0348|consen 390 ---------F------------AIPEQLLQR--------------------YTVVPPKLRLVALAALLLNKVKFEEKQKM 428 (708)
T ss_pred ---------c------------cCcHHhhhc--------------------eEecCCchhHHHHHHHHHHHhhhhhhcee
Confidence 0 000000000 0011122 233333332 2222334589
Q ss_pred EEEEchHHHHHHHHHHHhhC-----------C-------CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEE
Q 000379 418 IIFVERIIAAKVVERFVKKV-----------P-------FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLF 479 (1604)
Q Consensus 418 IIFv~~r~ta~~L~~~L~~~-----------~-------~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLI 479 (1604)
|||+.+.+.++.-+.++... | -+.+.+...+||. |++++|..+++.|+...--||+
T Consensus 429 iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGs------m~QeeRts~f~~Fs~~~~~VLL 502 (708)
T KOG0348|consen 429 IVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGS------MEQEERTSVFQEFSHSRRAVLL 502 (708)
T ss_pred EEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCc------hhHHHHHHHHHhhccccceEEE
Confidence 99999999998877776531 1 1224567788998 9999999999999998888999
Q ss_pred EccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEeccCHHHHHHHH
Q 000379 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERGNLKQRNKLF 538 (1604)
Q Consensus 480 aT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~~~~~~~~l~ 538 (1604)
||+|+++|||+|.+.+||.||+|.+..+|+||+||+.|.|-+ .++|+.+++.+....++
T Consensus 503 cTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~ 563 (708)
T KOG0348|consen 503 CTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLK 563 (708)
T ss_pred ehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHH
Confidence 999999999999999999999999999999999999999954 78888877665444443
No 47
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.97 E-value=2.4e-31 Score=306.68 Aligned_cols=330 Identities=17% Similarity=0.259 Sum_probs=251.7
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh----
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---- 116 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---- 116 (1604)
.-..|.+.|..|++.++ +.+.||.+..|+|||+++..++.+-+. .+.....++||+||++++.|..+.++..
T Consensus 44 ~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~---~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf 120 (980)
T KOG4284|consen 44 AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLD---SRSSHIQKVIVTPTREIAVQIKETVRKVAPSF 120 (980)
T ss_pred cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcC---cccCcceeEEEecchhhhhHHHHHHHHhcccc
Confidence 34578999999999998 689999999999999998876555432 4445667899999999999999999874
Q ss_pred cCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhh
Q 000379 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 117 ~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
.|+++..+.||..... -...++.++|+|+||+++..++..+.++++.++|+|+|||+.+.....+...+..++..
T Consensus 121 ~g~~csvfIGGT~~~~-----d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~s 195 (980)
T KOG4284|consen 121 TGARCSVFIGGTAHKL-----DLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINS 195 (980)
T ss_pred cCcceEEEecCchhhh-----hhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHh
Confidence 5899999999986543 23446689999999999999999999999999999999999998877788888888888
Q ss_pred cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhh
Q 000379 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~ 276 (1604)
++...+++.+|||-..+ +. ..|-. +...|..+...-+.... .++++.+..
T Consensus 196 lP~~rQv~a~SATYp~n--------Ld---n~Lsk-----------------~mrdp~lVr~n~~d~~L--~GikQyv~~ 245 (980)
T KOG4284|consen 196 LPQIRQVAAFSATYPRN--------LD---NLLSK-----------------FMRDPALVRFNADDVQL--FGIKQYVVA 245 (980)
T ss_pred cchhheeeEEeccCchh--------HH---HHHHH-----------------HhcccceeecccCCcee--echhheeee
Confidence 88889999999995432 11 22222 22333211111000000 000000000
Q ss_pred hhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000379 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1604)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1604)
..
T Consensus 246 ----------------------~~-------------------------------------------------------- 247 (980)
T KOG4284|consen 246 ----------------------KC-------------------------------------------------------- 247 (980)
T ss_pred ----------------------cc--------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
+ . ......+.-|++.|-+++.... ..++||||+....|+-++..|+.
T Consensus 248 -----------------s--------~-----nnsveemrlklq~L~~vf~~ip---y~QAlVF~~~~sra~~~a~~L~s 294 (980)
T KOG4284|consen 248 -----------------S--------P-----NNSVEEMRLKLQKLTHVFKSIP---YVQALVFCDQISRAEPIATHLKS 294 (980)
T ss_pred -----------------C--------C-----cchHHHHHHHHHHHHHHHhhCc---hHHHHhhhhhhhhhhHHHHHhhc
Confidence 0 0 0000001235666666665543 34789999999999999999988
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
.|+.|.++.|. |++++|..+++.+|.-.++|||+|+..++|||-+.+|+||+.|.|.+-..|.||+||||
T Consensus 295 ----sG~d~~~ISga------M~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAg 364 (980)
T KOG4284|consen 295 ----SGLDVTFISGA------MSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAG 364 (980)
T ss_pred ----cCCCeEEeccc------cchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcc
Confidence 68999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCce--EEEEEeccC
Q 000379 517 QHNSQ--FILMLERGN 530 (1604)
Q Consensus 517 R~gs~--~i~~v~~~~ 530 (1604)
|.|++ .+.++.++.
T Consensus 365 RFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 365 RFGAHGAAVTLLEDER 380 (980)
T ss_pred cccccceeEEEeccch
Confidence 99987 566666553
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=4.9e-30 Score=331.15 Aligned_cols=321 Identities=20% Similarity=0.280 Sum_probs=218.5
Q ss_pred CCCCCCCcHHHHHHHHHhhc-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH
Q 000379 40 NSINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
....|+|+++|.++++.+.. .|.++++|||||||++|++++...+. .+.+++||+||++|+.|+++.
T Consensus 256 ~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------~g~q~lilaPT~~LA~Q~~~~ 329 (681)
T PRK10917 256 ASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------AGYQAALMAPTEILAEQHYEN 329 (681)
T ss_pred HhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEeccHHHHHHHHHH
Confidence 34578999999999998864 38999999999999999998877664 355799999999999999999
Q ss_pred HHhhc---CCcEEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHH
Q 000379 113 IRVHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTK 188 (1604)
Q Consensus 113 i~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~ 188 (1604)
+++.+ ++++..++|+..... ..+.+.... +..+|+|+||+.+.+ .+.+.++++||+||+|+.... . ..
T Consensus 330 l~~l~~~~~i~v~ll~G~~~~~~-r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~-q-r~ 401 (681)
T PRK10917 330 LKKLLEPLGIRVALLTGSLKGKE-RREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE-Q-RL 401 (681)
T ss_pred HHHHHhhcCcEEEEEcCCCCHHH-HHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH-H-HH
Confidence 99875 689999999876543 223334333 359999999987743 456788999999999997321 1 11
Q ss_pred HHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCcccc
Q 000379 189 IMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS 268 (1604)
Q Consensus 189 im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~ 268 (1604)
.+ ......|++|+|||||.... + .+...-+..+.... . .|... ..
T Consensus 402 ~l----~~~~~~~~iL~~SATp~prt-----------l-~~~~~g~~~~s~i~------~---~p~~r------~~---- 446 (681)
T PRK10917 402 AL----REKGENPHVLVMTATPIPRT-----------L-AMTAYGDLDVSVID------E---LPPGR------KP---- 446 (681)
T ss_pred HH----HhcCCCCCEEEEeCCCCHHH-----------H-HHHHcCCCceEEEe------c---CCCCC------CC----
Confidence 22 12234689999999996321 0 00000000000000 0 00000 00
Q ss_pred chhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Q 000379 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348 (1604)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 348 (1604)
+
T Consensus 447 -----i-------------------------------------------------------------------------- 447 (681)
T PRK10917 447 -----I-------------------------------------------------------------------------- 447 (681)
T ss_pred -----c--------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchH----
Q 000379 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI---- 424 (1604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r---- 424 (1604)
... + ....+...+++.+.... ..+.+++|||+..
T Consensus 448 --------------------~~~-------~--------------~~~~~~~~~~~~i~~~~-~~g~q~~v~~~~ie~s~ 485 (681)
T PRK10917 448 --------------------TTV-------V--------------IPDSRRDEVYERIREEI-AKGRQAYVVCPLIEESE 485 (681)
T ss_pred --------------------EEE-------E--------------eCcccHHHHHHHHHHHH-HcCCcEEEEEccccccc
Confidence 000 0 00001112222222111 2345899999853
Q ss_pred ----HHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcC
Q 000379 425 ----IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500 (1604)
Q Consensus 425 ----~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD 500 (1604)
..+..+++.|... +.++++..+||+ |+.++|.+++++|++|+++|||||+++++|||+|++++||+||
T Consensus 486 ~l~~~~~~~~~~~L~~~--~~~~~v~~lHG~------m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~ 557 (681)
T PRK10917 486 KLDLQSAEETYEELQEA--FPELRVGLLHGR------MKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIEN 557 (681)
T ss_pred chhHHHHHHHHHHHHHH--CCCCcEEEEeCC------CCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeC
Confidence 3455667777653 234789999999 9999999999999999999999999999999999999999999
Q ss_pred CCC-CHHHHHHHhhhhcccCce--EEEEEe-ccCHHHHHHHH
Q 000379 501 LPK-TVSSYIQSRGRARQHNSQ--FILMLE-RGNLKQRNKLF 538 (1604)
Q Consensus 501 ~p~-s~~syiQr~GRA~R~gs~--~i~~v~-~~~~~~~~~l~ 538 (1604)
.|. ....+.|++||+||.|.+ +++++. +.+....++++
T Consensus 558 ~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~ 599 (681)
T PRK10917 558 AERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLK 599 (681)
T ss_pred CCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHH
Confidence 997 578899999999999854 455543 22333444444
No 49
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.8e-31 Score=290.14 Aligned_cols=329 Identities=21% Similarity=0.274 Sum_probs=234.0
Q ss_pred CCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---C
Q 000379 45 IPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---D 118 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---~ 118 (1604)
.|..+|..+++.++. +|.|..+..|+|||.++++.+..... ..-..+.++.|+||++|+.|.-+++.+.- +
T Consensus 112 kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd---~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ 188 (477)
T KOG0332|consen 112 KPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVD---PDVVVPQCICLAPTRELAPQTGEVVEEMGKFTE 188 (477)
T ss_pred CcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcC---ccccCCCceeeCchHHHHHHHHHHHHHhcCcee
Confidence 588899999999985 99999999999999999987655432 33345568999999999999999988643 3
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHh-cCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~-~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
+.+....-+... -+...-..+|+++||+.+++++.. ..+.+..+..+|+|||+++.....+...-..+++..
T Consensus 189 ita~yair~sk~-------~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~l 261 (477)
T KOG0332|consen 189 LTASYAIRGSKA-------KRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSL 261 (477)
T ss_pred eeEEEEecCccc-------ccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhc
Confidence 333333222211 111222568999999999999888 889999999999999999987654444333344455
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~ 277 (1604)
+...+++.+|||-.. ..... ..+.++.|....+.-..
T Consensus 262 P~~~QllLFSATf~e------------~V~~F----------------a~kivpn~n~i~Lk~ee--------------- 298 (477)
T KOG0332|consen 262 PRNQQLLLFSATFVE------------KVAAF----------------ALKIVPNANVIILKREE--------------- 298 (477)
T ss_pred CCcceEEeeechhHH------------HHHHH----------------HHHhcCCCceeeeehhh---------------
Confidence 667899999999421 11111 11222222211110000
Q ss_pred hhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000379 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1604)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1604)
+
T Consensus 299 ----------------------------------------------l--------------------------------- 299 (477)
T KOG0332|consen 299 ----------------------------------------------L--------------------------------- 299 (477)
T ss_pred ----------------------------------------------c---------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC
Q 000379 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1604)
Q Consensus 358 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~ 437 (1604)
.+..+.++...+ .....|.+.|.++... -.-.+.||||.++.+|..|+..|..
T Consensus 300 ------~L~~IkQlyv~C-----------------~~~~~K~~~l~~lyg~---~tigqsiIFc~tk~ta~~l~~~m~~- 352 (477)
T KOG0332|consen 300 ------ALDNIKQLYVLC-----------------ACRDDKYQALVNLYGL---LTIGQSIIFCHTKATAMWLYEEMRA- 352 (477)
T ss_pred ------cccchhhheeec-----------------cchhhHHHHHHHHHhh---hhhhheEEEEeehhhHHHHHHHHHh-
Confidence 000000000000 0114577777775432 2234789999999999999999988
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCC------CHHHHHHH
Q 000379 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK------TVSSYIQS 511 (1604)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~------s~~syiQr 511 (1604)
.|..+..+||+ |...+|..++++||+|..+|||+|+|.++|||++.+++||+||+|- ++..|+||
T Consensus 353 ---~Gh~V~~l~G~------l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHR 423 (477)
T KOG0332|consen 353 ---EGHQVSLLHGD------LTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHR 423 (477)
T ss_pred ---cCceeEEeecc------chhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHH
Confidence 58889999999 8999999999999999999999999999999999999999999996 68999999
Q ss_pred hhhhcccCce--EEEEEeccCH-HHHHHHHHHH
Q 000379 512 RGRARQHNSQ--FILMLERGNL-KQRNKLFDII 541 (1604)
Q Consensus 512 ~GRA~R~gs~--~i~~v~~~~~-~~~~~l~~~~ 541 (1604)
+||+||.|.+ .+-|+++++. ....++++..
T Consensus 424 iGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F 456 (477)
T KOG0332|consen 424 IGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHF 456 (477)
T ss_pred hcccccccccceEEEeecccCcHHHHHHHHHHH
Confidence 9999999987 5667765543 3334555444
No 50
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3e-30 Score=290.77 Aligned_cols=334 Identities=20% Similarity=0.294 Sum_probs=249.5
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHH-H-HhhCCCCeEEEEEecChhhHHHHHHHHHhh---c
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQ-A-IKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---T 117 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~-~-~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---~ 117 (1604)
-+|++.|.++++.++ ++++|-.+-||||||-+++.++.-.+. + ....+.++..||+|||++|+.|.+.+.+++ .
T Consensus 244 ~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~y 323 (731)
T KOG0339|consen 244 EKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAY 323 (731)
T ss_pred ccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhc
Confidence 479999999999887 689999999999999999997665442 1 123467888999999999999999999887 4
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
+++++.+||+.+..++.+ .+-.++.||||||++|++++..+-.++.++++|||||++++..- .|-..++.+....
T Consensus 324 gl~~v~~ygGgsk~eQ~k----~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdm-Gfe~qVrSI~~hi 398 (731)
T KOG0339|consen 324 GLRVVAVYGGGSKWEQSK----ELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDM-GFEPQVRSIKQHI 398 (731)
T ss_pred cceEEEeecCCcHHHHHH----hhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhcc-ccHHHHHHHHhhc
Confidence 899999999987654322 23368999999999999999999999999999999999999754 3333333333333
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhh-cCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELEST-LDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~-l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~ 276 (1604)
.+..+.|.+|||- ...|..|.+- |...+..+.. ++ . ....+
T Consensus 399 rpdrQtllFsaTf------------~~kIe~lard~L~dpVrvVqg--~v----------------g-ean~d------- 440 (731)
T KOG0339|consen 399 RPDRQTLLFSATF------------KKKIEKLARDILSDPVRVVQG--EV----------------G-EANED------- 440 (731)
T ss_pred CCcceEEEeeccc------------hHHHHHHHHHHhcCCeeEEEe--eh----------------h-ccccc-------
Confidence 4556889999994 2344444432 2211111100 00 0 00000
Q ss_pred hhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000379 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1604)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1604)
T Consensus 441 -------------------------------------------------------------------------------- 440 (731)
T KOG0339|consen 441 -------------------------------------------------------------------------------- 440 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
+... -..++ ....|+.-|++.|..+. ...++||||.-+.+++.+...|+-
T Consensus 441 -------ITQ~-V~V~~--------------------s~~~Kl~wl~~~L~~f~--S~gkvlifVTKk~~~e~i~a~Lkl 490 (731)
T KOG0339|consen 441 -------ITQT-VSVCP--------------------SEEKKLNWLLRHLVEFS--SEGKVLIFVTKKADAEEIAANLKL 490 (731)
T ss_pred -------hhhe-eeecc--------------------CcHHHHHHHHHHhhhhc--cCCcEEEEEeccCCHHHHHHHhcc
Confidence 0000 00000 11346777777776664 345899999999999999998875
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
.++.+..+||+ |.+.+|.++|.+|+.+.+.|||||+|+.+|+|||....||+||...+...|.||+||+|
T Consensus 491 ----k~~~v~llhgd------kdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtg 560 (731)
T KOG0339|consen 491 ----KGFNVSLLHGD------KDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTG 560 (731)
T ss_pred ----ccceeeeecCc------hhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcc
Confidence 68999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCce--EEEEEeccCHHHHHHHHHH
Q 000379 517 QHNSQ--FILMLERGNLKQRNKLFDI 540 (1604)
Q Consensus 517 R~gs~--~i~~v~~~~~~~~~~l~~~ 540 (1604)
|.|.+ .+.++++.+.+..-.|-+.
T Consensus 561 Rag~kGvayTlvTeKDa~fAG~LVnn 586 (731)
T KOG0339|consen 561 RAGEKGVAYTLVTEKDAEFAGHLVNN 586 (731)
T ss_pred cccccceeeEEechhhHHHhhHHHHH
Confidence 99975 6677776555543334333
No 51
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=1.6e-29 Score=310.07 Aligned_cols=336 Identities=22% Similarity=0.321 Sum_probs=233.3
Q ss_pred CCCCCCCcHHHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 40 NSINFIPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
....++||+||.++++.+.+ +.+++++|||+|||++++..|..+.. .++||||+.+|+.||++.+.
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~---------~~Lvlv~~~~L~~Qw~~~~~ 101 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR---------STLVLVPTKELLDQWAEALK 101 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC---------CEEEEECcHHHHHHHHHHHH
Confidence 55678899999999998864 67999999999999999999887532 29999999999999999999
Q ss_pred hhcCCc--EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHH
Q 000379 115 VHTDFE--VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKE 192 (1604)
Q Consensus 115 ~~~~~~--v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~ 192 (1604)
.+++.. ++.+.|+. ... . ...|.|+|+|.+.............+++||||||||.... .|..+...
T Consensus 102 ~~~~~~~~~g~~~~~~-~~~------~----~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-~~~~~~~~ 169 (442)
T COG1061 102 KFLLLNDEIGIYGGGE-KEL------E----PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-SYRRILEL 169 (442)
T ss_pred HhcCCccccceecCce-ecc------C----CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH-HHHHHHHh
Confidence 888775 44444432 111 0 1479999999997652222333447999999999999764 56666665
Q ss_pred HHhhcCCCCc-EEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhh-hccCCcceeeeeccCCCccccch
Q 000379 193 FYHKSDNKPK-VFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKESCRFYDQSKFCGSDL 270 (1604)
Q Consensus 193 ~~~~~~~~p~-iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~-~~~~~p~e~~~~y~~~~~~~~~l 270 (1604)
+ ..+. +|||||||.+.++ ..+..+...++..++...-.+.+. .+..++....+.......
T Consensus 170 ~-----~~~~~~LGLTATp~R~D~--------~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~----- 231 (442)
T COG1061 170 L-----SAAYPRLGLTATPEREDG--------GRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTED----- 231 (442)
T ss_pred h-----hcccceeeeccCceeecC--------CchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchH-----
Confidence 4 3344 9999999986541 236777777877777776555554 444433322222211000
Q ss_pred hhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 000379 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350 (1604)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1604)
....|..... ..... . ...+ .
T Consensus 232 ---------------------~~~~~~~~~~-------~~~~~----~---~~~~------~------------------ 252 (442)
T COG1061 232 ---------------------EEREYAKESA-------RFREL----L---RARG------T------------------ 252 (442)
T ss_pred ---------------------HHHHhhhhhh-------hhhhh----h---hhhh------h------------------
Confidence 0000000000 00000 0 0000 0
Q ss_pred HHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHH
Q 000379 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430 (1604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L 430 (1604)
.........+ ......|+..+..++..+. .+.+++||+.+..++..+
T Consensus 253 --------~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i 299 (442)
T COG1061 253 --------LRAENEARRI-----------------------AIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEI 299 (442)
T ss_pred --------hhHHHHHHHH-----------------------hhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHH
Confidence 0000000000 0011346666666666543 456899999999999999
Q ss_pred HHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHH
Q 000379 431 ERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510 (1604)
Q Consensus 431 ~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQ 510 (1604)
...+.. .++ +..+.|. .+..+|..++++||.|++++||++.|+.||+|+|+++++|...+..|...|+|
T Consensus 300 ~~~~~~----~~~-~~~it~~------t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q 368 (442)
T COG1061 300 AKLFLA----PGI-VEAITGE------TPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQ 368 (442)
T ss_pred HHHhcC----CCc-eEEEECC------CCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHH
Confidence 999876 334 7888888 58999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhcc
Q 000379 511 SRGRARQ 517 (1604)
Q Consensus 511 r~GRA~R 517 (1604)
|+||.-|
T Consensus 369 ~lGR~LR 375 (442)
T COG1061 369 RLGRGLR 375 (442)
T ss_pred Hhhhhcc
Confidence 9999999
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=1.6e-29 Score=324.61 Aligned_cols=311 Identities=23% Similarity=0.307 Sum_probs=213.0
Q ss_pred CCCCCCcHHHHHHHHHhhc-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHH
Q 000379 41 SINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i 113 (1604)
...|+|+++|.++++.+.. .|.++++|||||||++|++++...+. .+.+++|++||++|+.|+++.+
T Consensus 231 ~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------~g~qvlilaPT~~LA~Q~~~~~ 304 (630)
T TIGR00643 231 SLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------AGYQVALMAPTEILAEQHYNSL 304 (630)
T ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------cCCcEEEECCHHHHHHHHHHHH
Confidence 4568999999999998864 36899999999999999998877665 3456999999999999999999
Q ss_pred Hhhc---CCcEEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHH
Q 000379 114 RVHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189 (1604)
Q Consensus 114 ~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i 189 (1604)
++.+ ++++..++|+..... ....|.... ++.+|+|+|+..+.+ .+.+.++++||+||+|+.... ....+
T Consensus 305 ~~l~~~~gi~v~lltg~~~~~~-r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~-qr~~l 377 (630)
T TIGR00643 305 RNLLAPLGIEVALLTGSLKGKR-RKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE-QRKKL 377 (630)
T ss_pred HHHhcccCcEEEEEecCCCHHH-HHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH-HHHHH
Confidence 9876 589999999876543 222343333 468999999997743 356788999999999997421 22222
Q ss_pred HHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccc
Q 000379 190 MKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1604)
Q Consensus 190 m~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~ 269 (1604)
.. .. .....|++|+|||||.... +...+.... +...+ ...+........
T Consensus 378 ~~-~~-~~~~~~~~l~~SATp~prt--------------l~l~~~~~l----~~~~i-~~~p~~r~~i~~---------- 426 (630)
T TIGR00643 378 RE-KG-QGGFTPHVLVMSATPIPRT--------------LALTVYGDL----DTSII-DELPPGRKPITT---------- 426 (630)
T ss_pred HH-hc-ccCCCCCEEEEeCCCCcHH--------------HHHHhcCCc----ceeee-ccCCCCCCceEE----------
Confidence 21 11 0012689999999997421 000000000 00000 000000000000
Q ss_pred hhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHH
Q 000379 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349 (1604)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1604)
T Consensus 427 -------------------------------------------------------------------------------- 426 (630)
T TIGR00643 427 -------------------------------------------------------------------------------- 426 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchH-----
Q 000379 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI----- 424 (1604)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r----- 424 (1604)
. + . ..+.+ ..+++.+.... ..+.+++|||+..
T Consensus 427 ---------------------~-------~----------~---~~~~~-~~~~~~i~~~l-~~g~q~~v~~~~i~~s~~ 463 (630)
T TIGR00643 427 ---------------------V-------L----------I---KHDEK-DIVYEFIEEEI-AKGRQAYVVYPLIEESEK 463 (630)
T ss_pred ---------------------E-------E----------e---CcchH-HHHHHHHHHHH-HhCCcEEEEEcccccccc
Confidence 0 0 0 00001 11222221110 1234789999765
Q ss_pred ---HHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCC
Q 000379 425 ---IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501 (1604)
Q Consensus 425 ---~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~ 501 (1604)
..+..+++.|... +.++.+..+||+ |+.++|.+++++|++|+.+|||||+++++|||+|++++||+||.
T Consensus 464 ~~~~~a~~~~~~L~~~--~~~~~v~~lHG~------m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~ 535 (630)
T TIGR00643 464 LDLKAAEALYERLKKA--FPKYNVGLLHGR------MKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDA 535 (630)
T ss_pred chHHHHHHHHHHHHhh--CCCCcEEEEeCC------CCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCC
Confidence 4566777777653 256789999999 89999999999999999999999999999999999999999999
Q ss_pred CC-CHHHHHHHhhhhcccCce--EEEEE
Q 000379 502 PK-TVSSYIQSRGRARQHNSQ--FILML 526 (1604)
Q Consensus 502 p~-s~~syiQr~GRA~R~gs~--~i~~v 526 (1604)
|. +..+|.||+||+||.|.+ +++++
T Consensus 536 ~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 536 ERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 87 688999999999999854 55555
No 53
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.97 E-value=1e-30 Score=295.24 Aligned_cols=212 Identities=28% Similarity=0.392 Sum_probs=176.2
Q ss_pred HHHHHHHhcccCCCCCChHHHHHhhccCCCC----CCCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhc
Q 000379 1042 SQLREEINCHSRNFHIPSSLILEALTTLGCC----ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1117 (1604)
Q Consensus 1042 ~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~----~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~ 1117 (1604)
..|++.|+|.|.| +.++++||||+|+. ...||||||||||++|+++++.+||.+||+.++|.||.+|+.+||
T Consensus 6 ~~l~~~lg~~f~~----~~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvs 81 (229)
T PRK00102 6 EELQKKLGYTFKD----PELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVR 81 (229)
T ss_pred HHHHHHhCCCCCC----HHHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhC
Confidence 4688999999988 89999999999995 356999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchh
Q 000379 1118 NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTI 1197 (1604)
Q Consensus 1118 N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~l 1197 (1604)
|.+|+.+|.++||+.||+..+ +..
T Consensus 82 n~~la~~a~~lgl~~~i~~~~---------~~~----------------------------------------------- 105 (229)
T PRK00102 82 EESLAEIARELGLGEYLLLGK---------GEE----------------------------------------------- 105 (229)
T ss_pred HHHHHHHHHHCCcHHHHccCc---------HHH-----------------------------------------------
Confidence 999999999999999998542 000
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHhCCcccccchhhhhhhhcccccccCCCHHHHHHHHHHhCCccCCHHHHHHHHcc
Q 000379 1198 ADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITH 1277 (1604)
Q Consensus 1198 ADvvEAliGA~~~~~G~~~a~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH 1277 (1604)
T Consensus 106 -------------------------------------------------------------------------------- 105 (229)
T PRK00102 106 -------------------------------------------------------------------------------- 105 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHH
Q 000379 1278 ASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFK 1357 (1604)
Q Consensus 1278 ~S~~~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~ 1357 (1604)
. ......+|+++|+|||+|||||+|+|+ +.+++|+.
T Consensus 106 -------------------------------~-----------~~~~~~~k~~ad~~EA~iGAiyld~g~--~~~~~~i~ 141 (229)
T PRK00102 106 -------------------------------K-----------SGGRRRPSILADAFEALIGAIYLDQGL--EAARKFIL 141 (229)
T ss_pred -------------------------------H-----------cCCCCCccHHHHHHHHHHHHHHHhCCH--HHHHHHHH
Confidence 0 000124677888888888888888876 67888887
Q ss_pred hhhccccCCC---CCCCCchHHHHHHHHhcCCcceee-e-eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHH
Q 000379 1358 PILSPIVTPD---KLELPPLRELIELCDSLGYFVKEN-C-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAAS 1430 (1604)
Q Consensus 1358 ~~l~~~i~~~---~~~~~p~~~L~e~~~~~~~~~~~~-~-~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~ 1430 (1604)
.++.|.+... ....||++.|+|+|++.+...+.+ + ...|+. +.|+|.|+++|. .++.|.|.|||+||..||+
T Consensus 142 ~~~~~~l~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~-~~~~g~g~skk~Ae~~AA~ 220 (229)
T PRK00102 142 RLFEPRIEEIDLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGK-ELGEGTGSSKKEAEQAAAK 220 (229)
T ss_pred HHHHHHHHhhccccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCE-EEEEeeeCCHHHHHHHHHH
Confidence 7777766542 345799999999999988876533 3 334543 789999999986 8999999999999999999
Q ss_pred HHHHHhhh
Q 000379 1431 QLLKKLEV 1438 (1604)
Q Consensus 1431 ~AL~~L~~ 1438 (1604)
+||+.|+.
T Consensus 221 ~Al~~l~~ 228 (229)
T PRK00102 221 QALKKLKE 228 (229)
T ss_pred HHHHHHhh
Confidence 99999875
No 54
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.3e-30 Score=290.59 Aligned_cols=353 Identities=22% Similarity=0.302 Sum_probs=221.5
Q ss_pred CCCCcHHHHHHHHHhh----------ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH
Q 000379 43 NFIPRIYQLKVFEVAK----------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l----------~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
.-...|.|...+.+++ .+++.|.+|||||||++|+++|.+.+... .-+.-+++||+||+.|+.|.+++
T Consensus 157 is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R--~v~~LRavVivPtr~L~~QV~~~ 234 (620)
T KOG0350|consen 157 ISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR--PVKRLRAVVIVPTRELALQVYDT 234 (620)
T ss_pred cccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC--CccceEEEEEeeHHHHHHHHHHH
Confidence 3456788988888774 28899999999999999999999887521 12346799999999999999999
Q ss_pred HHhhc---CCcEEEEECCCCCCccchhHHHHhcC----CCcEEEEcHHHHHHHHHh-cCcCccceeEEEEeCcccccCCC
Q 000379 113 IRVHT---DFEVEEYYGAKGVDEWDSQCWQKEIN----KNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGNH 184 (1604)
Q Consensus 113 i~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~~----~~~ViV~T~q~Ll~~l~~-~~~~l~~i~llI~DEaH~~~~~~ 184 (1604)
|.++. |+.|+...|..+...-. .+-.-. ..||+|+||++|++.+.. ..+.+.++.++|+|||+++.+.
T Consensus 235 f~~~~~~tgL~V~~~sgq~sl~~E~---~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~q- 310 (620)
T KOG0350|consen 235 FKRLNSGTGLAVCSLSGQNSLEDEA---RQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQ- 310 (620)
T ss_pred HHHhccCCceEEEecccccchHHHH---HHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHH-
Confidence 99875 68888888877654311 111112 349999999999999984 5688999999999999999754
Q ss_pred hHHHHHHHHHhhcCCCC-------cEEEEec--cCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcce
Q 000379 185 PYTKIMKEFYHKSDNKP-------KVFGMTA--SPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE 255 (1604)
Q Consensus 185 ~~~~im~~~~~~~~~~p-------~iLgLTA--TP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e 255 (1604)
.|...+...... -..+ .||-+.- +|.. +.++.+.++
T Consensus 311 sfQ~Wl~~v~~~-~~~~k~~~~~~nii~~~~~~~pt~-------------~~e~~t~~~--------------------- 355 (620)
T KOG0350|consen 311 SFQEWLDTVMSL-CKTMKRVACLDNIIRQRQAPQPTV-------------LSELLTKLG--------------------- 355 (620)
T ss_pred HHHHHHHHHHHH-hCCchhhcChhhhhhhcccCCchh-------------hHHHHhhcC---------------------
Confidence 333322221111 0111 2222221 1110 111111110
Q ss_pred eeeeccCCC--ccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHH
Q 000379 256 SCRFYDQSK--FCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD-ELGLICAYEA 332 (1604)
Q Consensus 256 ~~~~y~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~lG~~~~~~~ 332 (1604)
..|.+.. ..+..+ . ..+.++.++.....+ +..+.. ..|.
T Consensus 356 --~~~~~l~kL~~satL---------------s-----------qdP~Kl~~l~l~~Pr----l~~v~~~~~~r------ 397 (620)
T KOG0350|consen 356 --KLYPPLWKLVFSATL---------------S-----------QDPSKLKDLTLHIPR----LFHVSKPLIGR------ 397 (620)
T ss_pred --CcCchhHhhhcchhh---------------h-----------cChHHHhhhhcCCCc----eEEeeccccee------
Confidence 0111100 000000 0 000000000000000 000000 0000
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCC
Q 000379 333 VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKS 412 (1604)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~ 412 (1604)
|. +...+..... .....-|...+..++..+.
T Consensus 398 -----------------ys------------lp~~l~~~~v------------------v~~~~~kpl~~~~lI~~~k-- 428 (620)
T KOG0350|consen 398 -----------------YS------------LPSSLSHRLV------------------VTEPKFKPLAVYALITSNK-- 428 (620)
T ss_pred -----------------ee------------cChhhhhcee------------------ecccccchHhHHHHHHHhh--
Confidence 00 0000000000 0000124445556665543
Q ss_pred CCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCC
Q 000379 413 TQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPN 492 (1604)
Q Consensus 413 ~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~ 492 (1604)
-.++|+|+++..++..|.+.|+-...-..+++..+.|. ++.+.|.+.+++|+.|++++|||++++.+|||+-+
T Consensus 429 -~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~------l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~ 501 (620)
T KOG0350|consen 429 -LNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQ------LNGKRRYKMLEKFAKGDINVLICSDALARGIDVND 501 (620)
T ss_pred -cceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhh------hhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccc
Confidence 45899999999999999999983222234566678887 89999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEeccC
Q 000379 493 CSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERGN 530 (1604)
Q Consensus 493 ~nlVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~~ 530 (1604)
++.||+||+|.+..+|+||+||++|+|+. ++.++...+
T Consensus 502 v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 502 VDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred cceEeecCCCchhhHHHHhhcccccccCCceEEEeecccc
Confidence 99999999999999999999999999975 455555443
No 55
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=7.6e-30 Score=284.11 Aligned_cols=340 Identities=22% Similarity=0.251 Sum_probs=246.7
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHh---hCCCCeEEEEEecChhhHHHHHHHHHhhc-
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPTVHLVHQQYDVIRVHT- 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~---~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~- 117 (1604)
--.|+-.|..+++.++ ++|+++.+.||||||.++++++.+.+-... ....+..+++||||++|+.|.+.++.+..
T Consensus 39 ~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~ 118 (569)
T KOG0346|consen 39 WEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVE 118 (569)
T ss_pred cCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHH
Confidence 3468999999999998 589999999999999999998777553111 23456679999999999999999998753
Q ss_pred ----CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcC-cCccceeEEEEeCcccccCCChHHHHHHH
Q 000379 118 ----DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF-LSLDIVCFIVIDECHHATGNHPYTKIMKE 192 (1604)
Q Consensus 118 ----~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~-~~l~~i~llI~DEaH~~~~~~~~~~im~~ 192 (1604)
.+++.-+..+++... .-....+.++|+|+||..++.++..+. ..++.++++|+|||+-+... .|..-|+.
T Consensus 119 ~c~k~lr~~nl~s~~sdsv----~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsf-GYeedlk~ 193 (569)
T KOG0346|consen 119 YCSKDLRAINLASSMSDSV----NSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSF-GYEEDLKK 193 (569)
T ss_pred HHHHhhhhhhhhcccchHH----HHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhc-ccHHHHHH
Confidence 355555555443221 113455789999999999999999887 77889999999999999876 88888888
Q ss_pred HHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhh
Q 000379 193 FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1604)
Q Consensus 193 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~ 272 (1604)
+....++.-+-|+||||.. ..+..|...+- +.|......-..... + .
T Consensus 194 l~~~LPr~~Q~~LmSATl~------------dDv~~LKkL~l----------------~nPviLkl~e~el~~-~----d 240 (569)
T KOG0346|consen 194 LRSHLPRIYQCFLMSATLS------------DDVQALKKLFL----------------HNPVILKLTEGELPN-P----D 240 (569)
T ss_pred HHHhCCchhhheeehhhhh------------hHHHHHHHHhc----------------cCCeEEEeccccCCC-c----c
Confidence 7766676777899999953 23444444321 111110000000000 0 0
Q ss_pred hhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000379 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1604)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1604)
.+...+..+
T Consensus 241 qL~Qy~v~c----------------------------------------------------------------------- 249 (569)
T KOG0346|consen 241 QLTQYQVKC----------------------------------------------------------------------- 249 (569)
T ss_pred cceEEEEEe-----------------------------------------------------------------------
Confidence 000000000
Q ss_pred hhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHH
Q 000379 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1604)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~ 432 (1604)
...+|+..+.-+|+-- --.++.|||||+.+.+-.|.-
T Consensus 250 -----------------------------------------se~DKflllyallKL~--LI~gKsliFVNtIdr~YrLkL 286 (569)
T KOG0346|consen 250 -----------------------------------------SEEDKFLLLYALLKLR--LIRGKSLIFVNTIDRCYRLKL 286 (569)
T ss_pred -----------------------------------------ccchhHHHHHHHHHHH--HhcCceEEEEechhhhHHHHH
Confidence 0123444444444311 112489999999999999998
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEcc------------------------------
Q 000379 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATD------------------------------ 482 (1604)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~------------------------------ 482 (1604)
+|.+ -|++..++.|. |+...|.-+++.|..|-+.++|||+
T Consensus 287 fLeq----FGiksciLNse------LP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK 356 (569)
T KOG0346|consen 287 FLEQ----FGIKSCILNSE------LPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKK 356 (569)
T ss_pred HHHH----hCcHhhhhccc------ccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccc
Confidence 8887 47888889988 8999999999999999999999998
Q ss_pred -----ccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEeccCHHHHHHHHHHHHHH
Q 000379 483 -----VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERGNLKQRNKLFDIIRSE 544 (1604)
Q Consensus 483 -----vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~~~~~~~~l~~~~~~e 544 (1604)
-..+|||+..++.|||||+|.+..+||||+||++|.+++ .+.|+.+.+......++..+..+
T Consensus 357 ~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 357 LDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDE 425 (569)
T ss_pred cCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhH
Confidence 235799999999999999999999999999999999865 67777766666566777766654
No 56
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.97 E-value=3.3e-31 Score=289.02 Aligned_cols=321 Identities=21% Similarity=0.315 Sum_probs=236.7
Q ss_pred CCCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHH--HH---hhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQ--AI---KSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~--~~---~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
.....|+|+|.+.++-++ +++.|..+=||||||+++++++.-+.- .. ...+.++.-||+||+++|+.|.++.+.
T Consensus 188 KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 188 KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 567899999999999988 699999999999999999986554332 11 135567778999999999999999988
Q ss_pred hhc---------CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC--
Q 000379 115 VHT---------DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-- 183 (1604)
Q Consensus 115 ~~~---------~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-- 183 (1604)
.++ .++...+.|+..+.. ..+....+.+|+|+||++|.++|.+..++++-..++.+|||+++.+-
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~e----ql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGF 343 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVRE----QLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGF 343 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHH----HHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccc
Confidence 754 257888899887654 23445568999999999999999999999999999999999999854
Q ss_pred -ChHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccC
Q 000379 184 -HPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ 262 (1604)
Q Consensus 184 -~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~ 262 (1604)
...+.|...| +...+.|++|||.... |...... . .-+|.... ...
T Consensus 344 Eddir~iF~~F----K~QRQTLLFSATMP~K------------IQ~FAkS------------A----LVKPvtvN--VGR 389 (610)
T KOG0341|consen 344 EDDIRTIFSFF----KGQRQTLLFSATMPKK------------IQNFAKS------------A----LVKPVTVN--VGR 389 (610)
T ss_pred hhhHHHHHHHH----hhhhheeeeeccccHH------------HHHHHHh------------h----cccceEEe--ccc
Confidence 2333343333 3556889999995321 1111110 0 00111100 000
Q ss_pred CCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q 000379 263 SKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLK 342 (1604)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~ 342 (1604)
.-.-+ ..+.
T Consensus 390 AGAAs--------------------------------------------------ldVi--------------------- 398 (610)
T KOG0341|consen 390 AGAAS--------------------------------------------------LDVI--------------------- 398 (610)
T ss_pred ccccc--------------------------------------------------hhHH---------------------
Confidence 00000 0000
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEc
Q 000379 343 AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE 422 (1604)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~ 422 (1604)
+.-+|.. ...|+-.|++-|.+ ....++||++
T Consensus 399 -------------QevEyVk--------------------------------qEaKiVylLeCLQK----T~PpVLIFaE 429 (610)
T KOG0341|consen 399 -------------QEVEYVK--------------------------------QEAKIVYLLECLQK----TSPPVLIFAE 429 (610)
T ss_pred -------------HHHHHHH--------------------------------hhhhhhhHHHHhcc----CCCceEEEec
Confidence 0000100 02355566665543 3347999999
Q ss_pred hHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCC
Q 000379 423 RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502 (1604)
Q Consensus 423 ~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p 502 (1604)
.+..++.+.++|-- .+..+..+||. -++++|...++.||.|+..|||||+|++.|+|+|++.+|||||+|
T Consensus 430 kK~DVD~IhEYLLl----KGVEavaIHGG------KDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP 499 (610)
T KOG0341|consen 430 KKADVDDIHEYLLL----KGVEAVAIHGG------KDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMP 499 (610)
T ss_pred cccChHHHHHHHHH----ccceeEEeecC------cchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCCh
Confidence 99999999998854 68889999998 489999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhhhcccCce--EEEEEecc
Q 000379 503 KTVSSYIQSRGRARQHNSQ--FILMLERG 529 (1604)
Q Consensus 503 ~s~~syiQr~GRA~R~gs~--~i~~v~~~ 529 (1604)
.....|+||+||+||.|.+ ...|++..
T Consensus 500 ~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 500 EEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred HHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 9999999999999999987 55666644
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.97 E-value=5e-29 Score=326.37 Aligned_cols=323 Identities=18% Similarity=0.234 Sum_probs=219.9
Q ss_pred CCCCcHHHHHHHHHh-h-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh--cC
Q 000379 43 NFIPRIYQLKVFEVA-K-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH--TD 118 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~-l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~--~~ 118 (1604)
..+|+++|.++++.. + ++|+++++|||+|||++|.++|...+. ..+.+++||+|+++|+.|+++.++.+ ++
T Consensus 21 ~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~-----~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 21 IEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLL-----REGGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHH-----hcCCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 357999999999863 3 699999999999999999887766543 13457999999999999999999864 47
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcC
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1604)
+++..++|+...+. .| +..++|+|+||+.+..++.++...++++++||+||+|.+.... ....+........
T Consensus 96 ~~v~~~~Gd~~~~~----~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~-rg~~le~il~~l~ 167 (720)
T PRK00254 96 LRVAMTTGDYDSTD----EW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYD-RGATLEMILTHML 167 (720)
T ss_pred CEEEEEeCCCCCch----hh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCcc-chHHHHHHHHhcC
Confidence 89999999865431 23 3578999999999998888776678999999999999996542 2233333333345
Q ss_pred CCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhh
Q 000379 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278 (1604)
Q Consensus 199 ~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~ 278 (1604)
..++++|||||+.+ ..++..+++...+....+ +.|....+.+.......
T Consensus 168 ~~~qiI~lSATl~n-------------~~~la~wl~~~~~~~~~r-------pv~l~~~~~~~~~~~~~----------- 216 (720)
T PRK00254 168 GRAQILGLSATVGN-------------AEELAEWLNAELVVSDWR-------PVKLRKGVFYQGFLFWE----------- 216 (720)
T ss_pred cCCcEEEEEccCCC-------------HHHHHHHhCCccccCCCC-------CCcceeeEecCCeeecc-----------
Confidence 67899999999753 245556666543222111 11110011110000000
Q ss_pred hhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHH
Q 000379 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358 (1604)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1604)
. .... .
T Consensus 217 -------------------~--~~~~----~------------------------------------------------- 222 (720)
T PRK00254 217 -------------------D--GKIE----R------------------------------------------------- 222 (720)
T ss_pred -------------------C--cchh----c-------------------------------------------------
Confidence 0 0000 0
Q ss_pred HHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC-
Q 000379 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV- 437 (1604)
Q Consensus 359 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~- 437 (1604)
........+.+.+. .+.++||||++|..|+.++..|...
T Consensus 223 -----------------------------------~~~~~~~~~~~~i~-----~~~~vLVF~~sr~~~~~~a~~l~~~~ 262 (720)
T PRK00254 223 -----------------------------------FPNSWESLVYDAVK-----KGKGALVFVNTRRSAEKEALELAKKI 262 (720)
T ss_pred -----------------------------------chHHHHHHHHHHHH-----hCCCEEEEEcChHHHHHHHHHHHHHH
Confidence 00000111122222 1347999999999887766555321
Q ss_pred ------CC--------------C--------CCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccC
Q 000379 438 ------PF--------------L--------THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMH 489 (1604)
Q Consensus 438 ------~~--------------~--------~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGID 489 (1604)
+. . -...+.++||. |++++|..+++.|++|.++|||||+++++|+|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag------l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvn 336 (720)
T PRK00254 263 KRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG------LGRTERVLIEDAFREGLIKVITATPTLSAGIN 336 (720)
T ss_pred HHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC------CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcC
Confidence 00 0 01247778887 99999999999999999999999999999999
Q ss_pred CCCccEEEE-------cCCCC-CHHHHHHHhhhhcccC----ceEEEEEecc
Q 000379 490 VPNCSYVIR-------FDLPK-TVSSYIQSRGRARQHN----SQFILMLERG 529 (1604)
Q Consensus 490 ip~~nlVI~-------fD~p~-s~~syiQr~GRA~R~g----s~~i~~v~~~ 529 (1604)
+|+.++||. |+.|. +..+|.||+|||||.| +..++++...
T Consensus 337 ipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 337 LPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred CCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 999999994 55444 5679999999999976 3567776544
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.97 E-value=6.2e-29 Score=324.43 Aligned_cols=319 Identities=18% Similarity=0.202 Sum_probs=218.2
Q ss_pred CCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh--cC
Q 000379 42 INFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH--TD 118 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~--~~ 118 (1604)
..++++++|.++++.+.. +|+++++|||+|||++|.+++.+.+. .+++++|++|+++|+.|++++++++ .+
T Consensus 19 ~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~------~~~k~v~i~P~raLa~q~~~~~~~l~~~g 92 (674)
T PRK01172 19 NDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL------AGLKSIYIVPLRSLAMEKYEELSRLRSLG 92 (674)
T ss_pred CCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH------hCCcEEEEechHHHHHHHHHHHHHHhhcC
Confidence 356799999999999874 89999999999999999998877654 2356999999999999999999864 37
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCC--h-HHHHHHHHHh
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH--P-YTKIMKEFYH 195 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~--~-~~~im~~~~~ 195 (1604)
.++...+|+...+. ..+..++|+|+||+.+..++.+....+.++++||+||||++.+.. + +..++.. ..
T Consensus 93 ~~v~~~~G~~~~~~-------~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~-~~ 164 (674)
T PRK01172 93 MRVKISIGDYDDPP-------DFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSS-AR 164 (674)
T ss_pred CeEEEEeCCCCCCh-------hhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHH-HH
Confidence 78888888764321 223478999999999988888776678899999999999986431 1 2222222 12
Q ss_pred hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
.....++++|||||+.. ..++..++++..+.... .+.|.+..+.|....+.
T Consensus 165 ~~~~~~riI~lSATl~n-------------~~~la~wl~~~~~~~~~-------r~vpl~~~i~~~~~~~~--------- 215 (674)
T PRK01172 165 YVNPDARILALSATVSN-------------ANELAQWLNASLIKSNF-------RPVPLKLGILYRKRLIL--------- 215 (674)
T ss_pred hcCcCCcEEEEeCccCC-------------HHHHHHHhCCCccCCCC-------CCCCeEEEEEecCeeee---------
Confidence 23456899999999742 24566677654332211 11121111111100000
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
+...
T Consensus 216 ----------------------~~~~------------------------------------------------------ 219 (674)
T PRK01172 216 ----------------------DGYE------------------------------------------------------ 219 (674)
T ss_pred ----------------------cccc------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
..+ ..+..++.... ..+.++||||+++..++.++..|.
T Consensus 220 ----------------------------------------~~~-~~~~~~i~~~~-~~~~~vLVF~~sr~~~~~~a~~L~ 257 (674)
T PRK01172 220 ----------------------------------------RSQ-VDINSLIKETV-NDGGQVLVFVSSRKNAEDYAEMLI 257 (674)
T ss_pred ----------------------------------------ccc-ccHHHHHHHHH-hCCCcEEEEeccHHHHHHHHHHHH
Confidence 000 00011111110 123479999999999998888776
Q ss_pred hC-CCCCC--------------------eeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCcc
Q 000379 436 KV-PFLTH--------------------LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494 (1604)
Q Consensus 436 ~~-~~~~~--------------------~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~n 494 (1604)
.. +.... ..+.++||. |+.++|..+++.|++|.++|||||+++++|+|+|+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hag------l~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~ 331 (674)
T PRK01172 258 QHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAG------LSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL 331 (674)
T ss_pred HhhhhcccccccccccccccHHHHHHHhcCEEEecCC------CCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE
Confidence 53 11001 135667777 9999999999999999999999999999999999865
Q ss_pred EEEEcC---------CCCCHHHHHHHhhhhcccCc----eEEEEEec
Q 000379 495 YVIRFD---------LPKTVSSYIQSRGRARQHNS----QFILMLER 528 (1604)
Q Consensus 495 lVI~fD---------~p~s~~syiQr~GRA~R~gs----~~i~~v~~ 528 (1604)
+|| +| .|.+..+|.||+|||||.|. ..++++..
T Consensus 332 VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~ 377 (674)
T PRK01172 332 VIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAAS 377 (674)
T ss_pred EEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecC
Confidence 554 33 25588899999999999983 35555543
No 59
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=2.1e-28 Score=325.15 Aligned_cols=299 Identities=18% Similarity=0.243 Sum_probs=209.1
Q ss_pred CCCCCCcHHHHHHHHHhhc-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHH
Q 000379 41 SINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i 113 (1604)
...++|++.|.++++.++. .|++++++||+|||.+|+.++...+. .+++++|||||++|+.|+++.+
T Consensus 596 ~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------~g~qvlvLvPT~eLA~Q~~~~f 669 (1147)
T PRK10689 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------NHKQVAVLVPTTLLAQQHYDNF 669 (1147)
T ss_pred hCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHHHH
Confidence 4577999999999998874 68999999999999999887765543 3567999999999999999999
Q ss_pred Hhhc---CCcEEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHH
Q 000379 114 RVHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189 (1604)
Q Consensus 114 ~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i 189 (1604)
++.+ ++++..++|..+...+ .+.|.... ...+|+|+||+.+ +..+.+.++++||+||+|++.- .....
T Consensus 670 ~~~~~~~~v~i~~l~g~~s~~e~-~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrfG~--~~~e~ 741 (1147)
T PRK10689 670 RDRFANWPVRIEMLSRFRSAKEQ-TQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRFGV--RHKER 741 (1147)
T ss_pred HHhhccCCceEEEEECCCCHHHH-HHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhcch--hHHHH
Confidence 8754 5678888887654432 22333322 4689999999754 2446678999999999999832 12222
Q ss_pred HHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHH-HHhhcCCceeeccchhhhhhccCCcceeeeeccCCCcccc
Q 000379 190 MKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISE-LESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS 268 (1604)
Q Consensus 190 m~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~-Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~ 268 (1604)
+ ...+..+++|+|||||.... +.. +....+..+... .|... .
T Consensus 742 l----k~l~~~~qvLl~SATpiprt-----------l~l~~~gl~d~~~I~~-----------~p~~r--------~--- 784 (1147)
T PRK10689 742 I----KAMRADVDILTLTATPIPRT-----------LNMAMSGMRDLSIIAT-----------PPARR--------L--- 784 (1147)
T ss_pred H----HhcCCCCcEEEEcCCCCHHH-----------HHHHHhhCCCcEEEec-----------CCCCC--------C---
Confidence 2 23456789999999997421 000 000001100000 00000 0
Q ss_pred chhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Q 000379 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348 (1604)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 348 (1604)
. +
T Consensus 785 ~----v-------------------------------------------------------------------------- 786 (1147)
T PRK10689 785 A----V-------------------------------------------------------------------------- 786 (1147)
T ss_pred C----c--------------------------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCC--HHHHHHHHHHHhhCCCCCcEEEEEEchHHH
Q 000379 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS--TKLHELLQLFLSFGKSTQVLCIIFVERIIA 426 (1604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~K~~~L~~lL~~~~~~~~~~~IIFv~~r~t 426 (1604)
.... ..... -|...+.++. .+.+++|||+++.+
T Consensus 787 --------------------~~~~-------------------~~~~~~~~k~~il~el~------r~gqv~vf~n~i~~ 821 (1147)
T PRK10689 787 --------------------KTFV-------------------REYDSLVVREAILREIL------RGGQVYYLYNDVEN 821 (1147)
T ss_pred --------------------eEEE-------------------EecCcHHHHHHHHHHHh------cCCeEEEEECCHHH
Confidence 0000 00000 0111122221 23589999999999
Q ss_pred HHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCC-CCH
Q 000379 427 AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP-KTV 505 (1604)
Q Consensus 427 a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p-~s~ 505 (1604)
++.+++.|.+. +++.++..+||. |++++|.+++.+|++|+++|||||+++++|||+|++++||..+.. .+.
T Consensus 822 ie~la~~L~~~--~p~~~v~~lHG~------m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fgl 893 (1147)
T PRK10689 822 IQKAAERLAEL--VPEARIAIGHGQ------MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 (1147)
T ss_pred HHHHHHHHHHh--CCCCcEEEEeCC------CCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCH
Confidence 99999999874 245688999999 999999999999999999999999999999999999999954432 355
Q ss_pred HHHHHHhhhhcccCce
Q 000379 506 SSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 506 ~syiQr~GRA~R~gs~ 521 (1604)
.+|+||+||+||.|.+
T Consensus 894 aq~~Qr~GRvGR~g~~ 909 (1147)
T PRK10689 894 AQLHQLRGRVGRSHHQ 909 (1147)
T ss_pred HHHHHHhhccCCCCCc
Confidence 6799999999999865
No 60
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=5.8e-28 Score=312.72 Aligned_cols=406 Identities=18% Similarity=0.195 Sum_probs=243.6
Q ss_pred CCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 44 FIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
.++|+||.+++.++. +.++|+++++|+|||+.++.++.++.. ..+..+.+|||||. +|+.||.++|+++++
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~---~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p 243 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHE---YRGITGPHMVVAPK-STLGNWMNEIRRFCP 243 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHH---hcCCCCCEEEEeCh-HHHHHHHHHHHHHCC
Confidence 579999999999885 478999999999999999998877654 22334458999997 888999999999985
Q ss_pred -CcEEEEECCCCCCccchhHHHH--hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCC-hHHHHHHHHH
Q 000379 119 -FEVEEYYGAKGVDEWDSQCWQK--EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH-PYTKIMKEFY 194 (1604)
Q Consensus 119 -~~v~~~~G~~~~~~~~~~~w~~--~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~-~~~~im~~~~ 194 (1604)
+++..++|...... ..... .....+|+|+||+.+..... .+.--.|++||+||||++.+.. ...+.++.+
T Consensus 244 ~l~v~~~~G~~~eR~---~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L- 317 (1033)
T PLN03142 244 VLRAVKFHGNPEERA---HQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNENSLLSKTMRLF- 317 (1033)
T ss_pred CCceEEEeCCHHHHH---HHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHHHHHHHHHHHh-
Confidence 67777887532111 11111 12468999999999876432 3333468899999999997632 233444433
Q ss_pred hhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcC---CceeeccchhhhhhccCCcceeeeeccCCCccccchh
Q 000379 195 HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLD---SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLK 271 (1604)
Q Consensus 195 ~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~---~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~ 271 (1604)
...++|+|||||+.++ +.+|.++|+ +.++. +...+..+...+. .... .
T Consensus 318 ----~a~~RLLLTGTPlqNn-----------l~ELwsLL~FL~P~~f~--s~~~F~~~f~~~~---------~~~~---~ 368 (1033)
T PLN03142 318 ----STNYRLLITGTPLQNN-----------LHELWALLNFLLPEIFS--SAETFDEWFQISG---------ENDQ---Q 368 (1033)
T ss_pred ----hcCcEEEEecCCCCCC-----------HHHHHHHHhcCCCCcCC--CHHHHHHHHcccc---------ccch---H
Confidence 3567899999999876 444554443 32222 1112211111100 0000 0
Q ss_pred hhhhhhhhhhchhHH-HHHHhHhhhh---------hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 000379 272 GKLEVSWSKFDASLS-KLQGSQLNCY---------KDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVL 341 (1604)
Q Consensus 272 ~~~~~~~~~~~~~~~-~l~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~ 341 (1604)
..+......+.+++. ++.......+ ..+...-+.+-..+... ....+...+.. ... +
T Consensus 369 e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k---~~~~l~~g~~~--~~L----l---- 435 (1033)
T PLN03142 369 EVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQK---DLDVVNAGGER--KRL----L---- 435 (1033)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHH---HHHHHhccccH--HHH----H----
Confidence 111111111112221 1111111000 01111111110000000 00000000000 000 0
Q ss_pred hhHHHHHHHHHhhHHHH-HHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEE
Q 000379 342 KAQEECEIYRQSSLQCK-YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIF 420 (1604)
Q Consensus 342 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIF 420 (1604)
.........|. .++ +....+. ............+.|+..|.++|.... ..+.|+|||
T Consensus 436 ------nilmqLRk~cnHP~L------~~~~ep~---------~~~~~~e~lie~SgKl~lLdkLL~~Lk-~~g~KVLIF 493 (1033)
T PLN03142 436 ------NIAMQLRKCCNHPYL------FQGAEPG---------PPYTTGEHLVENSGKMVLLDKLLPKLK-ERDSRVLIF 493 (1033)
T ss_pred ------HHHHHHHHHhCCHHh------hhccccc---------CcccchhHHhhhhhHHHHHHHHHHHHH-hcCCeEEee
Confidence 00000000000 000 0000000 000000001123789999999887765 456799999
Q ss_pred EchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC---CceEEEEccccccccCCCCccEEE
Q 000379 421 VERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG---KVNLLFATDVIEEGMHVPNCSYVI 497 (1604)
Q Consensus 421 v~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g---~~~iLIaT~vleeGIDip~~nlVI 497 (1604)
++...+...|.++|.. .++.+..++|. ++..+|..++++|+.. ..-+|++|.++++|||++.|+.||
T Consensus 494 SQft~~LdiLed~L~~----~g~~y~rIdGs------ts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VI 563 (1033)
T PLN03142 494 SQMTRLLDILEDYLMY----RGYQYCRIDGN------TGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVI 563 (1033)
T ss_pred hhHHHHHHHHHHHHHH----cCCcEEEECCC------CCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEE
Confidence 9999999999999976 47788899998 7899999999999763 346789999999999999999999
Q ss_pred EcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHH
Q 000379 498 RFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQ 533 (1604)
Q Consensus 498 ~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~ 533 (1604)
+||++||+....|+.|||.|.|++ ++.|+..+..++
T Consensus 564 iyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEE 603 (1033)
T PLN03142 564 LYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 603 (1033)
T ss_pred EeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHH
Confidence 999999999999999999999986 666777777664
No 61
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.96 E-value=1.6e-29 Score=284.04 Aligned_cols=208 Identities=25% Similarity=0.352 Sum_probs=169.8
Q ss_pred HHHHHhcccCCCCCChHHHHHhhccCCCCC-----CCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhch
Q 000379 1044 LREEINCHSRNFHIPSSLILEALTTLGCCE-----SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118 (1604)
Q Consensus 1044 l~~~l~~~~~~~~~~~~lll~AlT~~s~~~-----~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N 1118 (1604)
|++.|+|.|.| ++++.+||||+|+.. ..||||||||||++|+++++.++|.+||+.++|.|+.+|+.+|||
T Consensus 1 ~e~~lgy~F~~----~~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn 76 (220)
T TIGR02191 1 LEKRLGYKFKN----KELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSE 76 (220)
T ss_pred ChHHhCCCcCC----HHHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCH
Confidence 46789999988 999999999999864 349999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhH
Q 000379 1119 STLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIA 1198 (1604)
Q Consensus 1119 ~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lA 1198 (1604)
.+|+.+|.++||++||+..+ +.. .
T Consensus 77 ~~la~~a~~~gl~~~i~~~~---------~~~------------------------------------~----------- 100 (220)
T TIGR02191 77 ESLAEVARELGLGKFLLLGK---------GEE------------------------------------K----------- 100 (220)
T ss_pred HHHHHHHHHCCcHHHhccCc---------hHh------------------------------------h-----------
Confidence 99999999999999998542 000 0
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHhCCcccccchhhhhhhhcccccccCCCHHHHHHHHHHhCCccCCHHHHHHHHccC
Q 000379 1199 DCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHA 1278 (1604)
Q Consensus 1199 DvvEAliGA~~~~~G~~~a~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~ 1278 (1604)
T Consensus 101 -------------------------------------------------------------------------------- 100 (220)
T TIGR02191 101 -------------------------------------------------------------------------------- 100 (220)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHh
Q 000379 1279 SVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKP 1358 (1604)
Q Consensus 1279 S~~~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~ 1358 (1604)
......+|+++|+|||++||||+|+|+ +.+++|+..
T Consensus 101 ------------------------------------------~~~~~~~k~~ad~~eAliGAiyld~g~--~~~~~~i~~ 136 (220)
T TIGR02191 101 ------------------------------------------SGGRRRESILADAFEALIGAIYLDSGL--EAARKFILK 136 (220)
T ss_pred ------------------------------------------cCCcccchHHHHHHHHHHHHHHHhCCH--HHHHHHHHH
Confidence 000224677888888888888888874 777788777
Q ss_pred hhccccCC---CCCCCCchHHHHHHHHhcCCcce-eeee-eeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHH
Q 000379 1359 ILSPIVTP---DKLELPPLRELIELCDSLGYFVK-ENCT-LKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQ 1431 (1604)
Q Consensus 1359 ~l~~~i~~---~~~~~~p~~~L~e~~~~~~~~~~-~~~~-~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~ 1431 (1604)
++.|.+.. .....||++.|+|+|++.+...+ +.+. ..|+. +.|.|.|+++|. ..++|.|.|||+||+.||+.
T Consensus 137 ~~~~~~~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~-~~~~g~g~skk~A~~~AA~~ 215 (220)
T TIGR02191 137 LLIPRIDAIEKEETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGE-PYGEGKGKSKKEAEQNAAKA 215 (220)
T ss_pred HHHHHHHhhhcccccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCE-EEEEeeeCCHHHHHHHHHHH
Confidence 77776543 33557999999999998766544 4333 33543 689999999985 89999999999999999999
Q ss_pred HHHHh
Q 000379 1432 LLKKL 1436 (1604)
Q Consensus 1432 AL~~L 1436 (1604)
||++|
T Consensus 216 Al~~l 220 (220)
T TIGR02191 216 ALEKL 220 (220)
T ss_pred HHHhC
Confidence 99875
No 62
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=9.6e-28 Score=318.81 Aligned_cols=314 Identities=18% Similarity=0.217 Sum_probs=200.8
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHHh-------hCCCCeEEEEEecChhhHHHHHHHHHh---------------hcCCcE
Q 000379 64 AVLETGAGKTMIAVMLIKDIAQAIK-------SNGFKKLIIFLAPTVHLVHQQYDVIRV---------------HTDFEV 121 (1604)
Q Consensus 64 v~~~TGsGKTliailli~~~~~~~~-------~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---------------~~~~~v 121 (1604)
|++|||||||++|.+++...+.... ....+.++|||+|+++|+.|+.+.++. ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999996655442111 012346799999999999999998864 236789
Q ss_pred EEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc-CcCccceeEEEEeCcccccCCC---hHHHHHHHHHhhc
Q 000379 122 EEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-FLSLDIVCFIVIDECHHATGNH---PYTKIMKEFYHKS 197 (1604)
Q Consensus 122 ~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~-~~~l~~i~llI~DEaH~~~~~~---~~~~im~~~~~~~ 197 (1604)
...+|+...+. ......+.++|||+||+.|..++.+. ...++++++||+||+|.+.+.. .+...+..+....
T Consensus 81 ~vrtGDt~~~e----R~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~ 156 (1490)
T PRK09751 81 GIRTGDTPAQE----RSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL 156 (1490)
T ss_pred EEEECCCCHHH----HHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC
Confidence 99999876543 22223347899999999998887653 3468999999999999998642 3444555554445
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCc--eeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQ--VFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~--i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
...++++|||||... ..++.+.|... +..+... ..++....+.+.....
T Consensus 157 ~~~~QrIgLSATI~n-------------~eevA~~L~g~~pv~Iv~~~------~~r~~~l~v~vp~~d~---------- 207 (1490)
T PRK09751 157 HTSAQRIGLSATVRS-------------ASDVAAFLGGDRPVTVVNPP------AMRHPQIRIVVPVANM---------- 207 (1490)
T ss_pred CCCCeEEEEEeeCCC-------------HHHHHHHhcCCCCEEEECCC------CCcccceEEEEecCch----------
Confidence 567899999999642 23344444321 1111000 0000000000000000
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
.. +..... ..+ .
T Consensus 208 ----------~~--------~~~~~~---------------------~~~----------------------~------- 219 (1490)
T PRK09751 208 ----------DD--------VSSVAS---------------------GTG----------------------E------- 219 (1490)
T ss_pred ----------hh--------cccccc---------------------ccc----------------------c-------
Confidence 00 000000 000 0
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHH-HHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHH
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKL-HELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~-~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L 434 (1604)
... . .. .....+.+ ..+++.+. ...++||||++|..|+.+...|
T Consensus 220 -------~~~--------~--------------~r-~~~i~~~v~~~il~~i~-----~~~stLVFvNSR~~AE~La~~L 264 (1490)
T PRK09751 220 -------DSH--------A--------------GR-EGSIWPYIETGILDEVL-----RHRSTIVFTNSRGLAEKLTARL 264 (1490)
T ss_pred -------ccc--------h--------------hh-hhhhhHHHHHHHHHHHh-----cCCCEEEECCCHHHHHHHHHHH
Confidence 000 0 00 00000000 11222221 1247999999999999999988
Q ss_pred hhCCC---------------C--------------CCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccc
Q 000379 435 KKVPF---------------L--------------THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE 485 (1604)
Q Consensus 435 ~~~~~---------------~--------------~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vle 485 (1604)
++... + ..+.+..+||. |++++|..++++|++|++++||||++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGs------LSkeeR~~IE~~fK~G~LrvLVATssLE 338 (1490)
T PRK09751 265 NELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGS------VSKEQRAITEQALKSGELRCVVATSSLE 338 (1490)
T ss_pred HHhhhhhccccccccchhhhhhhccccchhccccccceeeeecccc------CCHHHHHHHHHHHHhCCceEEEeCcHHH
Confidence 76310 0 01224566777 9999999999999999999999999999
Q ss_pred cccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC
Q 000379 486 EGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 486 eGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g 519 (1604)
.||||+++++||+||.|.++.+|+||+|||||..
T Consensus 339 LGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~ 372 (1490)
T PRK09751 339 LGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQV 372 (1490)
T ss_pred ccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999974
No 63
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.5e-28 Score=283.26 Aligned_cols=342 Identities=21% Similarity=0.266 Sum_probs=241.2
Q ss_pred CCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHh--hCCCCeEEEEEecChhhHHHHHHHHHhhc-
Q 000379 42 INFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIK--SNGFKKLIIFLAPTVHLVHQQYDVIRVHT- 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~--~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~- 117 (1604)
..-.|.+.|.+++.-++. +++++++|||+|||+.+.++|...+.... ....+-+++|+.||++|+.|.+.+++.+.
T Consensus 155 ~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~ 234 (593)
T KOG0344|consen 155 GFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSI 234 (593)
T ss_pred CCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCC
Confidence 345799999999998874 99999999999999999999887775333 22445679999999999999999999865
Q ss_pred ----CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcC--cCccceeEEEEeCcccccCCChHHHHHH
Q 000379 118 ----DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF--LSLDIVCFIVIDECHHATGNHPYTKIMK 191 (1604)
Q Consensus 118 ----~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~--~~l~~i~llI~DEaH~~~~~~~~~~im~ 191 (1604)
++++..+........... ......++|+|.||-.+...+..+. +.+..+..+|+||++.+.....+.....
T Consensus 235 ~~~t~~~a~~~~~~~~~~qk~a---~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla 311 (593)
T KOG0344|consen 235 DEGTSLRAAQFSKPAYPSQKPA---FLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLA 311 (593)
T ss_pred CCCCchhhhhcccccchhhccc---hhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHH
Confidence 344444444322221000 1112357999999999999988775 7889999999999999987634444444
Q ss_pred HHHhhc-CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccch
Q 000379 192 EFYHKS-DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDL 270 (1604)
Q Consensus 192 ~~~~~~-~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l 270 (1604)
..|... .+.-++=.+|||-.. .+++.....-..+-..++.. +. .
T Consensus 312 ~I~sac~s~~i~~a~FSat~~~--------~VEE~~~~i~~~~~~vivg~--~~--------------------s----- 356 (593)
T KOG0344|consen 312 DIYSACQSPDIRVALFSATISV--------YVEEWAELIKSDLKRVIVGL--RN--------------------S----- 356 (593)
T ss_pred HHHHHhcCcchhhhhhhccccH--------HHHHHHHHhhccceeEEEec--ch--------------------h-----
Confidence 444433 333455566777321 11111111111000000000 00 0
Q ss_pred hhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 000379 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350 (1604)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1604)
T Consensus 357 -------------------------------------------------------------------------------- 356 (593)
T KOG0344|consen 357 -------------------------------------------------------------------------------- 356 (593)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHH
Q 000379 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430 (1604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L 430 (1604)
....+.+.+. . -+....|+..+.+++..- -...++|||++...|..|
T Consensus 357 -------------a~~~V~Qelv-------F----------~gse~~K~lA~rq~v~~g---~~PP~lIfVQs~eRak~L 403 (593)
T KOG0344|consen 357 -------------ANETVDQELV-------F----------CGSEKGKLLALRQLVASG---FKPPVLIFVQSKERAKQL 403 (593)
T ss_pred -------------Hhhhhhhhhe-------e----------eecchhHHHHHHHHHhcc---CCCCeEEEEecHHHHHHH
Confidence 0000000000 0 011245677777777653 234799999999999999
Q ss_pred HHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHH
Q 000379 431 ERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510 (1604)
Q Consensus 431 ~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQ 510 (1604)
+..|.. +.++.+.++||. .++.+|.+++++||.|++.+||||+++++|||+.++|+||+||.|.+..+|+|
T Consensus 404 ~~~L~~---~~~i~v~vIh~e------~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syih 474 (593)
T KOG0344|consen 404 FEELEI---YDNINVDVIHGE------RSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIH 474 (593)
T ss_pred HHHhhh---ccCcceeeEecc------cchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHH
Confidence 999863 468899999998 78999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccCc--eEEEEEeccCHHHHHHHHHHHHH
Q 000379 511 SRGRARQHNS--QFILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 511 r~GRA~R~gs--~~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
|+||+||+|. +.|.|+++.+..-.+.+.+.++.
T Consensus 475 rIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 475 RIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred HhhccCCCCCCcceEEEeccccchhhhhHHHHHHH
Confidence 9999999994 58999988777766666666543
No 64
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=298.87 Aligned_cols=323 Identities=18% Similarity=0.188 Sum_probs=229.9
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHh--hCCCCeEEEEEecChhhHHHHHHHHHh---h
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIK--SNGFKKLIIFLAPTVHLVHQQYDVIRV---H 116 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~--~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---~ 116 (1604)
.-+|++.|.++++.+. ++|++|.+|||||||.+|++++...+.... ....+-.+|++.|.++|.+.+...++. .
T Consensus 20 ~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~ 99 (814)
T COG1201 20 FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRE 99 (814)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 4579999999999997 599999999999999999998877665331 122345799999999999999888876 4
Q ss_pred cCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc--CcCccceeEEEEeCcccccCCChHHHH---HH
Q 000379 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA--FLSLDIVCFIVIDECHHATGNHPYTKI---MK 191 (1604)
Q Consensus 117 ~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~~i---m~ 191 (1604)
+|+.+..-+|++.... .-+...+-++|+|+||+.|.-++... .-.+.++..+|+||.|.+..+.-..++ +.
T Consensus 100 ~G~~v~vRhGDT~~~e----r~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~Le 175 (814)
T COG1201 100 LGIEVAVRHGDTPQSE----KQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLE 175 (814)
T ss_pred cCCccceecCCCChHH----hhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHH
Confidence 6899988888765332 22333457899999999998777653 234688999999999999866333322 23
Q ss_pred HHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCc-----eeeccchhhhhhccCCcceeeeeccCCCcc
Q 000379 192 EFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQ-----VFTIEDKTEMEVFVPSAKESCRFYDQSKFC 266 (1604)
Q Consensus 192 ~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~-----i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~ 266 (1604)
.+..... .++++|||||... ..++.++|... +..+.. .++-+..+.......
T Consensus 176 RL~~l~~-~~qRIGLSATV~~-------------~~~varfL~g~~~~~~Iv~~~~--------~k~~~i~v~~p~~~~- 232 (814)
T COG1201 176 RLRELAG-DFQRIGLSATVGP-------------PEEVAKFLVGFGDPCEIVDVSA--------AKKLEIKVISPVEDL- 232 (814)
T ss_pred HHHhhCc-ccEEEeehhccCC-------------HHHHHHHhcCCCCceEEEEccc--------CCcceEEEEecCCcc-
Confidence 2222233 7999999999642 23444444321 111000 000000000000000
Q ss_pred ccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHH
Q 000379 267 GSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE 346 (1604)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~ 346 (1604)
. |.
T Consensus 233 ---------------------------------~--------------------------~~------------------ 235 (814)
T COG1201 233 ---------------------------------I--------------------------YD------------------ 235 (814)
T ss_pred ---------------------------------c--------------------------cc------------------
Confidence 0 00
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHH
Q 000379 347 CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIA 426 (1604)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~t 426 (1604)
......-...+.++++++. .+|||+|+|.+
T Consensus 236 ---------------------------------------------~~~~~~~~~~i~~~v~~~~-----ttLIF~NTR~~ 265 (814)
T COG1201 236 ---------------------------------------------EELWAALYERIAELVKKHR-----TTLIFTNTRSG 265 (814)
T ss_pred ---------------------------------------------cchhHHHHHHHHHHHhhcC-----cEEEEEeChHH
Confidence 0001123344555555543 68999999999
Q ss_pred HHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHH
Q 000379 427 AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506 (1604)
Q Consensus 427 a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~ 506 (1604)
|+.+...|++.. ...+...||+ ++.+.|.++.++|++|+++++|||+.+|-|||+.++++||+|..|.++.
T Consensus 266 aE~l~~~L~~~~---~~~i~~HHgS------lSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~ 336 (814)
T COG1201 266 AERLAFRLKKLG---PDIIEVHHGS------LSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVN 336 (814)
T ss_pred HHHHHHHHHHhc---CCceeeeccc------ccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHH
Confidence 999999998852 2567777887 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccC---ceEEEEEec
Q 000379 507 SYIQSRGRARQHN---SQFILMLER 528 (1604)
Q Consensus 507 syiQr~GRA~R~g---s~~i~~v~~ 528 (1604)
.++||+||+|+.- |+.+++..+
T Consensus 337 r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 337 RFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HHhHhccccccccCCcccEEEEecC
Confidence 9999999998865 566666543
No 65
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=1.4e-27 Score=300.65 Aligned_cols=303 Identities=17% Similarity=0.210 Sum_probs=200.2
Q ss_pred CCCCcHHHHHHHHHhhc-c-CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000379 43 NFIPRIYQLKVFEVAKR-R-NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~-n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--- 117 (1604)
.++|+|||.++++.++. + ++++.+|||||||.++...+..+.. .....++++|+|||++|+.|.+++++++.
T Consensus 13 G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~---~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 13 GYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEI---GAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred CCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccc---cccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 46699999999999985 4 4777899999999865433222211 12234467778899999999999988754
Q ss_pred -----------------------CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcC---------
Q 000379 118 -----------------------DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS--------- 165 (1604)
Q Consensus 118 -----------------------~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~--------- 165 (1604)
++++..++|+.+.+ ..|...-..++|||+|+ +++.++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~----~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~ 161 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADN----DEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKS 161 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChH----HHHHhcCCCCcEEEECH----HHHcCCcccccccccccc
Confidence 26788899997654 35777777899999995 444455442
Q ss_pred -------ccceeEEEEeCcccccCCChHHHHHHHHHhhc--CC---CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhc
Q 000379 166 -------LDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DN---KPKVFGMTASPVVRKGVSSAMDCEGQISELESTL 233 (1604)
Q Consensus 166 -------l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~--~~---~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l 233 (1604)
++++++||+||||.. ..+...+..+.... +. ..++++||||+... +..+...+
T Consensus 162 ~pi~ag~L~~v~~LVLDEADLd---~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~e------------i~~l~~~~ 226 (844)
T TIGR02621 162 RPLHAGFLGQDALIVHDEAHLE---PAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTD------------GPDRTTLL 226 (844)
T ss_pred ccchhhhhccceEEEEehhhhc---cccHHHHHHHHHhcccCcccccceEEEEecCCCcc------------HHHHHHHH
Confidence 678999999999932 25666666665532 22 14899999997421 11121111
Q ss_pred CCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHH
Q 000379 234 DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDY 313 (1604)
Q Consensus 234 ~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (1604)
.. .|....+. .... .
T Consensus 227 ~~----------------~p~~i~V~--~~~l---------~-------------------------------------- 241 (844)
T TIGR02621 227 SA----------------EDYKHPVL--KKRL---------A-------------------------------------- 241 (844)
T ss_pred cc----------------CCceeecc--cccc---------c--------------------------------------
Confidence 10 00000000 0000 0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccC
Q 000379 314 HAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393 (1604)
Q Consensus 314 ~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (1604)
...+.... ..
T Consensus 242 ---------------------------------------------------a~ki~q~v-------------------~v 251 (844)
T TIGR02621 242 ---------------------------------------------------AKKIVKLV-------------------PP 251 (844)
T ss_pred ---------------------------------------------------ccceEEEE-------------------ec
Confidence 00000000 00
Q ss_pred CCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHH-----HHHH
Q 000379 394 YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQK-----EVLE 468 (1604)
Q Consensus 394 ~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~-----~vl~ 468 (1604)
....|+..++..+.........++||||+++..|..+++.|.+. ++ ..+||. |++.+|. .+++
T Consensus 252 ~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~----g~--~lLHG~------m~q~dR~~~~~~~il~ 319 (844)
T TIGR02621 252 SDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE----KF--ELLTGT------LRGAERDDLVKKEIFN 319 (844)
T ss_pred ChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc----CC--eEeeCC------CCHHHHhhHHHHHHHH
Confidence 00112222222221111123468999999999999999999873 33 789999 9999999 8899
Q ss_pred HHhC----CC-------ceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce
Q 000379 469 SFRG----GK-------VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 469 ~Fr~----g~-------~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~ 521 (1604)
+|++ |+ .+|||||+++|+||||+. ++||+++.| ..+|+||+||++|.|..
T Consensus 320 ~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 320 RFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGEL 380 (844)
T ss_pred HHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCC
Confidence 9987 54 789999999999999986 889988766 58999999999999863
No 66
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=4.7e-27 Score=284.00 Aligned_cols=316 Identities=18% Similarity=0.296 Sum_probs=228.4
Q ss_pred CCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEE
Q 000379 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
..|+-|.++++.++ ++|+|+.+|||.||+++|.++..-+ .+.+|+|.|..+|+..|.+.++.. |+.+..
T Consensus 17 ~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------~G~TLVVSPLiSLM~DQV~~l~~~-Gi~A~~ 86 (590)
T COG0514 17 SFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------EGLTLVVSPLISLMKDQVDQLEAA-GIRAAY 86 (590)
T ss_pred ccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------CCCEEEECchHHHHHHHHHHHHHc-Cceeeh
Confidence 45889999999998 5999999999999999999986532 236999999999999999999854 588888
Q ss_pred EECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-ChHHHHHHHHH--hhcCC
Q 000379 124 YYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEFY--HKSDN 199 (1604)
Q Consensus 124 ~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im~~~~--~~~~~ 199 (1604)
+.+..+.+.|. ..|.... ...+++.-+|+.|.+......+....+.++|+||||+++.+ |.|+.-...+- +..-+
T Consensus 87 lnS~l~~~e~~-~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~ 165 (590)
T COG0514 87 LNSTLSREERQ-QVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP 165 (590)
T ss_pred hhcccCHHHHH-HHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCC
Confidence 88877766643 3344443 45899999999997665555555678899999999999866 44433222221 12224
Q ss_pred CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCc---eee-ccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQ---VFT-IEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 200 ~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~---i~t-~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
.+.+++||||-.. ....++.+.|+.. ++. .-+|+.+ +|. +.
T Consensus 166 ~~p~~AlTATA~~-----------~v~~DI~~~L~l~~~~~~~~sfdRpNi------------~~~------------v~ 210 (590)
T COG0514 166 NPPVLALTATATP-----------RVRDDIREQLGLQDANIFRGSFDRPNL------------ALK------------VV 210 (590)
T ss_pred CCCEEEEeCCCCh-----------HHHHHHHHHhcCCCcceEEecCCCchh------------hhh------------hh
Confidence 7899999998432 1123333333221 110 0011110 000 00
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
T Consensus 211 -------------------------------------------------------------------------------- 210 (590)
T COG0514 211 -------------------------------------------------------------------------------- 210 (590)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
. .. +++.+.+ .+..........+||||.+|..++.+++.|.
T Consensus 211 --------------~---------------------~~--~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~ 251 (590)
T COG0514 211 --------------E---------------------KG--EPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLR 251 (590)
T ss_pred --------------h---------------------cc--cHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHH
Confidence 0 00 0000000 1111111334568999999999999999999
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhh
Q 000379 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1604)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA 515 (1604)
. .++++..+||+ |+..+|+.+.++|..+++.|+|||.+.+.|||-|++..|||||+|.|+.+|.|-.|||
T Consensus 252 ~----~g~~a~~YHaG------l~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRA 321 (590)
T COG0514 252 K----NGISAGAYHAG------LSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRA 321 (590)
T ss_pred H----CCCceEEecCC------CCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhc
Confidence 8 48999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCc--eEEEEEeccCHHHHH
Q 000379 516 RQHNS--QFILMLERGNLKQRN 535 (1604)
Q Consensus 516 ~R~gs--~~i~~v~~~~~~~~~ 535 (1604)
||.|. ..++++.++|....+
T Consensus 322 GRDG~~a~aill~~~~D~~~~~ 343 (590)
T COG0514 322 GRDGLPAEAILLYSPEDIRWQR 343 (590)
T ss_pred cCCCCcceEEEeeccccHHHHH
Confidence 99995 588888877765433
No 67
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.5e-28 Score=299.79 Aligned_cols=332 Identities=22% Similarity=0.291 Sum_probs=236.1
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHH--hhCCCCeEEEEEecChhhHHHHHHHHHhh---c
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAI--KSNGFKKLIIFLAPTVHLVHQQYDVIRVH---T 117 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~--~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---~ 117 (1604)
-.|+++|..|++.++ ++++|.++.||||||+.+++++..+.... ...+.++.++|++||++|+.|+.+.++.+ +
T Consensus 386 ~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l 465 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLL 465 (997)
T ss_pred CCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhc
Confidence 379999999999997 69999999999999999988776544311 13566889999999999999999998876 4
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc---CcCccceeEEEEeCcccccCC--Ch-HHHHHH
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA---FLSLDIVCFIVIDECHHATGN--HP-YTKIMK 191 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~---~~~l~~i~llI~DEaH~~~~~--~~-~~~im~ 191 (1604)
++++..+||+.+... ....+-.++.|+||||+++++.+-.+ ..++.++..+|+|||+++..- .| ..+|++
T Consensus 466 ~ir~v~vygg~~~~~----qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~ 541 (997)
T KOG0334|consen 466 GIRVVCVYGGSGISQ----QIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQ 541 (997)
T ss_pred CceEEEecCCccHHH----HHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHh
Confidence 899999999876543 23344457999999999999987544 345666779999999999621 11 011222
Q ss_pred HHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchh
Q 000379 192 EFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLK 271 (1604)
Q Consensus 192 ~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~ 271 (1604)
. ..+-.+.+..|||-. ..+..|.. .....|.+..+-+....
T Consensus 542 n----lrpdrQtvlfSatfp------------r~m~~la~----------------~vl~~Pveiiv~~~svV------- 582 (997)
T KOG0334|consen 542 N----LRPDRQTVLFSATFP------------RSMEALAR----------------KVLKKPVEIIVGGRSVV------- 582 (997)
T ss_pred h----cchhhhhhhhhhhhh------------HHHHHHHH----------------HhhcCCeeEEEccceeE-------
Confidence 1 112223344444411 00110000 00012222111110000
Q ss_pred hhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000379 272 GKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351 (1604)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1604)
T Consensus 583 -------------------------------------------------------------------------------- 582 (997)
T KOG0334|consen 583 -------------------------------------------------------------------------------- 582 (997)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHH
Q 000379 352 QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE 431 (1604)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~ 431 (1604)
...+.+.+ .--.....|+..|.++|..+.. +.++||||.....|..|.
T Consensus 583 -------------~k~V~q~v-----------------~V~~~e~eKf~kL~eLl~e~~e--~~~tiiFv~~qe~~d~l~ 630 (997)
T KOG0334|consen 583 -------------CKEVTQVV-----------------RVCAIENEKFLKLLELLGERYE--DGKTIIFVDKQEKADALL 630 (997)
T ss_pred -------------eccceEEE-----------------EEecCchHHHHHHHHHHHHHhh--cCCEEEEEcCchHHHHHH
Confidence 00000000 0011236799999999987753 679999999999999999
Q ss_pred HHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHH
Q 000379 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511 (1604)
Q Consensus 432 ~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr 511 (1604)
+-|.+ .++.|..+||. .++.+|..++.+||+|.+++||||+++++|+|++...+||+||.|.....|+||
T Consensus 631 ~~L~~----ag~~~~slHGg------v~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR 700 (997)
T KOG0334|consen 631 RDLQK----AGYNCDSLHGG------VDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHR 700 (997)
T ss_pred HHHHh----cCcchhhhcCC------CchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHH
Confidence 99987 57888889998 789999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCce--EEEEEeccCHHHHHHHHHH
Q 000379 512 RGRARQHNSQ--FILMLERGNLKQRNKLFDI 540 (1604)
Q Consensus 512 ~GRA~R~gs~--~i~~v~~~~~~~~~~l~~~ 540 (1604)
.||+||.|.+ .++|+.+.+.+-.-.|.+.
T Consensus 701 ~gRTgragrkg~AvtFi~p~q~~~a~dl~~a 731 (997)
T KOG0334|consen 701 VGRTGRAGRKGAAVTFITPDQLKYAGDLCKA 731 (997)
T ss_pred hcccccCCccceeEEEeChHHhhhHHHHHHH
Confidence 9999998864 7788876444433333333
No 68
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.95 E-value=6e-27 Score=298.63 Aligned_cols=321 Identities=21% Similarity=0.281 Sum_probs=220.4
Q ss_pred CCcHHHHHHHHHhh--ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH--hhcCCc
Q 000379 45 IPRIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR--VHTDFE 120 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l--~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~--~~~~~~ 120 (1604)
++.+.|++++.... ++|+||++|||+|||++|.+.|...+. . .+.+++++||+++|+.|.+++++ ..+|++
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~----~-~~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLL----E-GGGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHH----h-cCCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 88999999998875 499999999999999999998887665 1 24569999999999999999999 568999
Q ss_pred EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCC--hH-HHHHHHHHhhc
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH--PY-TKIMKEFYHKS 197 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~--~~-~~im~~~~~~~ 197 (1604)
|.+.+|+...+. ..+..++|+|+|||.+-..+++....+..+++||+||+|.+.+.. |. -.|.... +..
T Consensus 106 V~~~TgD~~~~~-------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~-~~~ 177 (766)
T COG1204 106 VGISTGDYDLDD-------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARM-RRL 177 (766)
T ss_pred EEEecCCcccch-------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHH-Hhh
Confidence 999999876442 345689999999999999998887788999999999999997652 21 1222221 122
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~ 277 (1604)
....||+|||||..+ ..++-.++++...... +.+-|-...+.|......
T Consensus 178 ~~~~rivgLSATlpN-------------~~evA~wL~a~~~~~~-------~rp~~l~~~v~~~~~~~~----------- 226 (766)
T COG1204 178 NELIRIVGLSATLPN-------------AEEVADWLNAKLVESD-------WRPVPLRRGVPYVGAFLG----------- 226 (766)
T ss_pred CcceEEEEEeeecCC-------------HHHHHHHhCCcccccC-------CCCcccccCCccceEEEE-----------
Confidence 233799999999643 4677778876533110 111110000000000000
Q ss_pred hhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000379 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1604)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1604)
...+
T Consensus 227 ---------------------~~~~------------------------------------------------------- 230 (766)
T COG1204 227 ---------------------ADGK------------------------------------------------------- 230 (766)
T ss_pred ---------------------ecCc-------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhh-
Q 000379 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK- 436 (1604)
Q Consensus 358 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~- 436 (1604)
.+ . .........+..++... ..+.+++|||++|..+...++.+..
T Consensus 231 -----------------------------~k-~--~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~ 276 (766)
T COG1204 231 -----------------------------KK-T--WPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIK 276 (766)
T ss_pred -----------------------------cc-c--ccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHH
Confidence 00 0 00000111111112222 3456899999999988777777662
Q ss_pred ---C------CCCCC----ee-------------EEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCC
Q 000379 437 ---V------PFLTH----LT-------------VAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490 (1604)
Q Consensus 437 ---~------~~~~~----~~-------------~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDi 490 (1604)
. +.... +. -....|-..++.+|+.++|.-+.+.||.|.++||+||+.++.|+|+
T Consensus 277 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNL 356 (766)
T COG1204 277 MSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNL 356 (766)
T ss_pred HhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCC
Confidence 1 00000 00 1112344445678999999999999999999999999999999999
Q ss_pred CCccEEE----EcC-----CCCCHHHHHHHhhhhcccC
Q 000379 491 PNCSYVI----RFD-----LPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 491 p~~nlVI----~fD-----~p~s~~syiQr~GRA~R~g 519 (1604)
|+-.+|| +|| .+-+.-+++|+.|||||.|
T Consensus 357 PA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg 394 (766)
T COG1204 357 PARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPG 394 (766)
T ss_pred cceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCC
Confidence 9877777 577 5568889999999999998
No 69
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.95 E-value=2.7e-26 Score=271.28 Aligned_cols=415 Identities=19% Similarity=0.223 Sum_probs=257.9
Q ss_pred CCCCCCCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH
Q 000379 37 SSTNSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 37 ~~~~~~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
++.......+|+||.+.+.++. +-|+|+++++|.|||+..|.++-++.. ..+-.+..+|+||...| .+|.+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~---~~~~~GPfLVi~P~StL-~NW~~ 234 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKG---RKGIPGPFLVIAPKSTL-DNWMN 234 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHH---hcCCCCCeEEEeeHhhH-HHHHH
Confidence 3444455789999999999985 478999999999999999998877654 22323337999999777 67999
Q ss_pred HHHhhc-CCcEEEEECCCCCCccchhHHHHhc--CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-ChHH
Q 000379 112 VIRVHT-DFEVEEYYGAKGVDEWDSQCWQKEI--NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYT 187 (1604)
Q Consensus 112 ~i~~~~-~~~v~~~~G~~~~~~~~~~~w~~~~--~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~ 187 (1604)
+|++++ ++++..++|+..- .....+..+ ...+|+|+||++.++. +.++.--.|.++|+||||++.+. .-..
T Consensus 235 Ef~rf~P~l~~~~~~Gdk~e---R~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~s~L~ 309 (971)
T KOG0385|consen 235 EFKRFTPSLNVVVYHGDKEE---RAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEKSKLS 309 (971)
T ss_pred HHHHhCCCcceEEEeCCHHH---HHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchhhHHH
Confidence 999999 5899999997521 112222222 3689999999999765 34555567999999999999865 3456
Q ss_pred HHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCC---ceeeccchhhhhhccCCcceeeeeccCCC
Q 000379 188 KIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS---QVFTIEDKTEMEVFVPSAKESCRFYDQSK 264 (1604)
Q Consensus 188 ~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~---~i~t~~~~~~l~~~~~~p~e~~~~y~~~~ 264 (1604)
+++++| ..+..|++|+||.+++ +.+|.++|+- -+|+ +.+.+..+...- ..
T Consensus 310 ~~lr~f-----~~~nrLLlTGTPLQNN-----------L~ELWaLLnFllPdiF~--~~e~F~swF~~~---------~~ 362 (971)
T KOG0385|consen 310 KILREF-----KTDNRLLLTGTPLQNN-----------LHELWALLNFLLPDIFN--SAEDFDSWFDFT---------NC 362 (971)
T ss_pred HHHHHh-----cccceeEeeCCccccc-----------HHHHHHHHHhhchhhcc--CHHHHHHHHccc---------cc
Confidence 778877 5788999999999886 6778777752 1121 112222221110 00
Q ss_pred ccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHH--HHHH
Q 000379 265 FCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDEL----GLICAYEAVK--ICLE 338 (1604)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l----G~~~~~~~~~--~~~~ 338 (1604)
.....+...+.... .+++.+- ++.......---.++ |.....+-+. ....
T Consensus 363 ~~~~e~v~~Lh~vL---~pFlLRR---------------------~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~k 418 (971)
T KOG0385|consen 363 EGDQELVSRLHKVL---RPFLLRR---------------------IKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMK 418 (971)
T ss_pred ccCHHHHHHHHhhh---hHHHHHH---------------------HHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHh
Confidence 00000011111111 1111100 000000000000000 0000000000 0000
Q ss_pred HhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCc----ccccccCCCCHHHHHHHHHHHhhCCCCC
Q 000379 339 KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY----SKAVDLGYISTKLHELLQLFLSFGKSTQ 414 (1604)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~K~~~L~~lL~~~~~~~~ 414 (1604)
.+.....+. ...+..+.++.-++...+... ..-.+... ......-.-|.|+..|-++|.... ..+
T Consensus 419 dl~~~n~~~-------~~~k~kL~NI~mQLRKccnHP---YLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk-~~G 487 (971)
T KOG0385|consen 419 DLDALNGEG-------KGEKTKLQNIMMQLRKCCNHP---YLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLK-EQG 487 (971)
T ss_pred cchhhcccc-------cchhhHHHHHHHHHHHhcCCc---cccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHH-hCC
Confidence 010000000 001122223333333222111 00000000 000111234789999999987765 567
Q ss_pred cEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC---ceEEEEccccccccCCC
Q 000379 415 VLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK---VNLLFATDVIEEGMHVP 491 (1604)
Q Consensus 415 ~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~---~~iLIaT~vleeGIDip 491 (1604)
.|++||.+-..+.+.|.+++.- +++....+.|. ++.++|...++.|.... +-+|++|.+++-|||+.
T Consensus 488 hRVLIFSQmt~mLDILeDyc~~----R~y~ycRiDGS------t~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~ 557 (971)
T KOG0385|consen 488 HRVLIFSQMTRMLDILEDYCML----RGYEYCRLDGS------TSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLT 557 (971)
T ss_pred CeEEEeHHHHHHHHHHHHHHHh----cCceeEeecCC------CCcHHHHHHHHhcCCCCcceEEEEEeccccccccccc
Confidence 8999999998888888888754 68889999998 78999999999998754 44689999999999999
Q ss_pred CccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHH
Q 000379 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLK 532 (1604)
Q Consensus 492 ~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~ 532 (1604)
.++.||.||..||+..-.|...||+|.|++ ++-|++....+
T Consensus 558 aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 558 AADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred cccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 999999999999999999999999999985 55566665554
No 70
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.6e-27 Score=263.13 Aligned_cols=328 Identities=21% Similarity=0.294 Sum_probs=243.3
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh---cCC
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---TDF 119 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---~~~ 119 (1604)
-+|...|+.|+..+. +.|+++.+++|+|||.++...+++.+. .......+++++|+++|+.|..++.+.. .+.
T Consensus 47 ekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD---~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~ 123 (397)
T KOG0327|consen 47 EKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQID---MSVKETQALILAPTRELAQQIQKVVRALGDHMDV 123 (397)
T ss_pred CCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcC---cchHHHHHHHhcchHHHHHHHHHHHHhhhcccce
Confidence 468999999987665 699999999999999998888877653 1223345899999999999999887764 367
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCC
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~ 199 (1604)
++..+.|+.+..... -......++|+|+||+...+.+..+.+....+.+.|+||++.+... .+...+.......+.
T Consensus 124 ~v~~~igg~~~~~~~---~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~-gfkdqI~~if~~lp~ 199 (397)
T KOG0327|consen 124 SVHACIGGTNVRRED---QALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSR-GFKDQIYDIFQELPS 199 (397)
T ss_pred eeeeecCcccchhhh---hhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhcc-chHHHHHHHHHHcCc
Confidence 888888877654211 1222346899999999999999999999999999999999999765 555555556666677
Q ss_pred CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 200 ~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
..+++.+|||-.. .+..+-. ++...|....+.++..
T Consensus 200 ~vQv~l~SAT~p~------------~vl~vt~----------------~f~~~pv~i~vkk~~l---------------- 235 (397)
T KOG0327|consen 200 DVQVVLLSATMPS------------DVLEVTK----------------KFMREPVRILVKKDEL---------------- 235 (397)
T ss_pred chhheeecccCcH------------HHHHHHH----------------HhccCceEEEecchhh----------------
Confidence 7899999999431 1111111 1111121111111000
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
T Consensus 236 -------------------------------------------------------------------------------- 235 (397)
T KOG0327|consen 236 -------------------------------------------------------------------------------- 235 (397)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCC
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~ 439 (1604)
.++-+.++.... . -.+|+..|.++... -...+|||+++.-+..|...|..
T Consensus 236 ----tl~gikq~~i~v-------~-----------k~~k~~~l~dl~~~-----~~q~~if~nt~r~v~~l~~~L~~--- 285 (397)
T KOG0327|consen 236 ----TLEGIKQFYINV-------E-----------KEEKLDTLCDLYRR-----VTQAVIFCNTRRKVDNLTDKLRA--- 285 (397)
T ss_pred ----hhhheeeeeeec-------c-----------ccccccHHHHHHHh-----hhcceEEecchhhHHHHHHHHhh---
Confidence 000000000000 0 01277777777762 23689999999999999999966
Q ss_pred CCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC
Q 000379 440 LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 440 ~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g 519 (1604)
.++.+..+||. |.+.+|..+++.|+.|..+|||+|+.+++|||+..|.+|||||.|.+..+|+||+||+||.|
T Consensus 286 -~~~~~s~~~~d------~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~g 358 (397)
T KOG0327|consen 286 -HGFTVSAIHGD------MEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFG 358 (397)
T ss_pred -CCceEEEeecc------cchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccC
Confidence 47899999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred ce--EEEEEeccCHHHHHHHHH
Q 000379 520 SQ--FILMLERGNLKQRNKLFD 539 (1604)
Q Consensus 520 s~--~i~~v~~~~~~~~~~l~~ 539 (1604)
.+ .+.|++..+......+++
T Consensus 359 rkg~~in~v~~~d~~~lk~ie~ 380 (397)
T KOG0327|consen 359 RKGVAINFVTEEDVRDLKDIEK 380 (397)
T ss_pred CCceeeeeehHhhHHHHHhHHH
Confidence 76 677777666655555553
No 71
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=3.6e-26 Score=302.68 Aligned_cols=361 Identities=19% Similarity=0.277 Sum_probs=211.1
Q ss_pred CCCCcHHHHHHHHHhh------ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 43 NFIPRIYQLKVFEVAK------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l------~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
.+.+|+||.++++.+. +++++++|+||||||++++.++..++. .+..++||||||+++|+.|+.+.|+.+
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~----~~~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLK----AKRFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHh----cCccCeEEEEecHHHHHHHHHHHHHhc
Confidence 3689999999998774 267999999999999999988877765 234467999999999999999999876
Q ss_pred cCC---cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc-----CcCccceeEEEEeCcccccCC-----
Q 000379 117 TDF---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-----FLSLDIVCFIVIDECHHATGN----- 183 (1604)
Q Consensus 117 ~~~---~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~-----~~~l~~i~llI~DEaH~~~~~----- 183 (1604)
... .+..+++...... . ..-...+|+|+|+|.|.+.+... ...+..+++||+|||||....
T Consensus 487 ~~~~~~~~~~i~~i~~L~~-----~-~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~ 560 (1123)
T PRK11448 487 KIEGDQTFASIYDIKGLED-----K-FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMS 560 (1123)
T ss_pred ccccccchhhhhchhhhhh-----h-cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccc
Confidence 311 1111222111010 0 01125799999999998765321 245688999999999997421
Q ss_pred -------------ChHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhcc
Q 000379 184 -------------HPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFV 250 (1604)
Q Consensus 184 -------------~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~ 250 (1604)
..|..++..| ....|||||||.... ...++..++..+..+.+..-.
T Consensus 561 ~~~~~~~~~~~~~~~yr~iL~yF------dA~~IGLTATP~r~t---------------~~~FG~pv~~Ysl~eAI~DG~ 619 (1123)
T PRK11448 561 EGELQFRDQLDYVSKYRRVLDYF------DAVKIGLTATPALHT---------------TEIFGEPVYTYSYREAVIDGY 619 (1123)
T ss_pred cchhccchhhhHHHHHHHHHhhc------CccEEEEecCCccch---------------hHHhCCeeEEeeHHHHHhcCC
Confidence 2345555532 257899999997431 234455555555444443221
Q ss_pred CCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000379 251 PSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330 (1604)
Q Consensus 251 ~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~ 330 (1604)
-.+.+....|.. .+....+ .++. ......|......++ ...+ ...+.+..
T Consensus 620 Lv~~~~p~~i~t-~~~~~gi---------~~~~------~e~~~~~~~~~~~i~--~~~l---~d~~~~~~--------- 669 (1123)
T PRK11448 620 LIDHEPPIRIET-RLSQEGI---------HFEK------GEEVEVINTQTGEID--LATL---EDEVDFEV--------- 669 (1123)
T ss_pred cccCcCCEEEEE-Eeccccc---------cccc------cchhhhcchhhhhhh--hccC---cHHHhhhH---------
Confidence 110000001100 0000000 0000 000000000000000 0000 00000000
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhC
Q 000379 331 EAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFG 410 (1604)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~ 410 (1604)
..+-..+... . ....-+..+.+.+..
T Consensus 670 ---------------------------~~~~~~vi~~--~-----------------------~~~~i~~~l~~~l~~-- 695 (1123)
T PRK11448 670 ---------------------------EDFNRRVITE--S-----------------------FNRVVCEELAKYLDP-- 695 (1123)
T ss_pred ---------------------------HHHHHHHhhH--H-----------------------HHHHHHHHHHHHHhc--
Confidence 0000000000 0 000011223333322
Q ss_pred CCCCcEEEEEEchHHHHHHHHHHHhhC-----CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc-eEEEEcccc
Q 000379 411 KSTQVLCIIFVERIIAAKVVERFVKKV-----PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV-NLLFATDVI 484 (1604)
Q Consensus 411 ~~~~~~~IIFv~~r~ta~~L~~~L~~~-----~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~-~iLIaT~vl 484 (1604)
....++||||.++.+|+.+.+.|... +...+..+..++|. ++ ++.+++++|+++.. +|+|+++++
T Consensus 696 -~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~------~~--~~~~li~~Fk~~~~p~IlVsvdmL 766 (1123)
T PRK11448 696 -TGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGS------ID--KPDQLIRRFKNERLPNIVVTVDLL 766 (1123)
T ss_pred -cCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCC------cc--chHHHHHHHhCCCCCeEEEEeccc
Confidence 22369999999999999988887653 22233345668887 22 45789999999987 699999999
Q ss_pred ccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC----ceEEEEEe
Q 000379 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN----SQFILMLE 527 (1604)
Q Consensus 485 eeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g----s~~i~~v~ 527 (1604)
.+|+|+|.|+.||.++++.|...|+|++||+.|.- ...+++++
T Consensus 767 ~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 767 TTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred ccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 99999999999999999999999999999999963 34444444
No 72
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.95 E-value=2.6e-26 Score=279.16 Aligned_cols=296 Identities=17% Similarity=0.175 Sum_probs=190.2
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCc----cch-
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDE----WDS- 135 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~----~~~- 135 (1604)
.++|.+|||+|||.++++++.+.+. .+...+++|++|+++|+.|+++.++..++..++.++|+..... .+.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~----~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIK----SQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHh----hCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCch
Confidence 4789999999999999998887654 2345679999999999999999999988877777777543110 000
Q ss_pred ---hHHHH------hcCCCcEEEEcHHHHHHHHHhcC----cCcc--ceeEEEEeCcccccCCChHHHHHHHHHhh-cCC
Q 000379 136 ---QCWQK------EINKNDVLVMTPQILLDALRKAF----LSLD--IVCFIVIDECHHATGNHPYTKIMKEFYHK-SDN 199 (1604)
Q Consensus 136 ---~~w~~------~~~~~~ViV~T~q~Ll~~l~~~~----~~l~--~i~llI~DEaH~~~~~~~~~~im~~~~~~-~~~ 199 (1604)
..|.. ..-..+|+|+||+.+++.+.++. ..+. ..++|||||||.+... .+.. +...... ...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~-~~~~-l~~~l~~l~~~ 154 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEY-TLAL-ILAVLEVLKDN 154 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHH-HHHH-HHHHHHHHHHc
Confidence 01111 11246899999999988776532 1111 2378999999999753 1211 2222211 234
Q ss_pred CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 200 ~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
..++++||||+. +.+..+...... .. .+ ..++.....
T Consensus 155 ~~~~i~~SATlp------------~~l~~~~~~~~~---~~-----------~~----~~~~~~~~~------------- 191 (358)
T TIGR01587 155 DVPILLMSATLP------------KFLKEYAEKIGY---VE-----------FN----EPLDLKEER------------- 191 (358)
T ss_pred CCCEEEEecCch------------HHHHHHHhcCCC---cc-----------cc----cCCCCcccc-------------
Confidence 678999999963 112211111100 00 00 000000000
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
.+. . ..
T Consensus 192 ~~~----------~----------------------------------------------------------------~~ 197 (358)
T TIGR01587 192 RFE----------R----------------------------------------------------------------HR 197 (358)
T ss_pred ccc----------c----------------------------------------------------------------cc
Confidence 000 0 00
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCC
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~ 439 (1604)
+ . ........|...+.+++.... .+.++||||+++..++.+++.|++..
T Consensus 198 ~-----------~-----------------~~~~~~~~~~~~l~~l~~~~~--~~~~~lVf~~t~~~~~~~~~~L~~~~- 246 (358)
T TIGR01587 198 F-----------I-----------------KIESDKVGEISSLERLLEFIK--KGGKIAIIVNTVDRAQEFYQQLKENA- 246 (358)
T ss_pred c-----------e-----------------eeccccccCHHHHHHHHHHhh--CCCeEEEEECCHHHHHHHHHHHHhhc-
Confidence 0 0 000000122333334443322 24589999999999999999998641
Q ss_pred CCCeeEEEEEcCCCCCCCCCHHHHHH----HHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhh
Q 000379 440 LTHLTVAYLTGSTTSVDALTPKVQKE----VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1604)
Q Consensus 440 ~~~~~~~~l~G~~~~~~~m~~~~r~~----vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA 515 (1604)
....+..+||. |++.+|.+ ++++|++|+.++||||+++++|||++ +++||+++.| +.+|+||.||+
T Consensus 247 -~~~~~~~~h~~------~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~ 316 (358)
T TIGR01587 247 -PEEEIMLLHSR------FTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRL 316 (358)
T ss_pred -CCCeEEEEECC------CCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccc
Confidence 23468899998 88888865 58999999999999999999999996 8999998766 78999999999
Q ss_pred cccCc
Q 000379 516 RQHNS 520 (1604)
Q Consensus 516 ~R~gs 520 (1604)
||.|.
T Consensus 317 gR~g~ 321 (358)
T TIGR01587 317 HRYGR 321 (358)
T ss_pred cCCCC
Confidence 99874
No 73
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=1.9e-25 Score=266.04 Aligned_cols=429 Identities=16% Similarity=0.158 Sum_probs=255.3
Q ss_pred CCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc-C
Q 000379 45 IPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-D 118 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~-~ 118 (1604)
.+.+||++.++++. +...|+.+++|.|||...+..+..+.+.. .--+.+|||||. .++.||.+++.++. .
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~---k~~~paLIVCP~-Tii~qW~~E~~~w~p~ 280 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG---KLTKPALIVCPA-TIIHQWMKEFQTWWPP 280 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc---cccCceEEEccH-HHHHHHHHHHHHhCcc
Confidence 57899999999985 36789999999999998888877776621 112459999997 89999999999987 5
Q ss_pred CcEEEEECCCCC----CccchhHHHHhc-----CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCC-hHHH
Q 000379 119 FEVEEYYGAKGV----DEWDSQCWQKEI-----NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH-PYTK 188 (1604)
Q Consensus 119 ~~v~~~~G~~~~----~~~~~~~w~~~~-----~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~-~~~~ 188 (1604)
++|.++||..+. ..-....|+..+ ....|+++||..+.-. ...+.-..|+++|+||.|.+.+.. ....
T Consensus 281 ~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpns~isl 358 (923)
T KOG0387|consen 281 FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPNSKISL 358 (923)
T ss_pred eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCccHHHH
Confidence 889999886552 111223344433 4568999999987422 223444568999999999998642 3334
Q ss_pred HHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeecc---chhhhhhccCCcceeeeeccCCCc
Q 000379 189 IMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE---DKTEMEVFVPSAKESCRFYDQSKF 265 (1604)
Q Consensus 189 im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~---~~~~l~~~~~~p~e~~~~y~~~~~ 265 (1604)
.++++ ..+++|+||+||++|+ +.+|.+++|-. .|. ....+.....-|...--+-...+.
T Consensus 359 ackki-----~T~~RiILSGTPiQNn-----------L~ELwsLfDFv--~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~ 420 (923)
T KOG0387|consen 359 ACKKI-----RTVHRIILSGTPIQNN-----------LTELWSLFDFV--FPGKLGTLPVFQQNFEHPINRGGYANASPR 420 (923)
T ss_pred HHHhc-----cccceEEeeCccccch-----------HHHHHHHhhhc--cCCcccchHHHHhhhhhheeccccCCCCHH
Confidence 44443 5689999999999876 78888887732 221 112222211112111111111000
Q ss_pred cccchhhhhhhhhhhhchhHHHHHH-hHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHhhh
Q 000379 266 CGSDLKGKLEVSWSKFDASLSKLQG-SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL--EKVLK 342 (1604)
Q Consensus 266 ~~~~l~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~--~~~~~ 342 (1604)
.-..-..-...+...+.+++.+-+. .... ..++++ ++.-+||.....+..+ .-+.
T Consensus 421 qv~~aykca~~Lr~lI~PylLRR~K~dv~~--~~Lp~K-------------------~E~VlfC~LT~~QR~~Y~~fl~- 478 (923)
T KOG0387|consen 421 QVQTAYKCAVALRDLISPYLLRRMKSDVKG--LKLPKK-------------------EEIVLFCRLTKLQRRLYQRFLN- 478 (923)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhh--ccCCCc-------------------cceEEEEeccHHHHHHHHHHhh-
Confidence 0000000000011111122111110 0000 001110 0111222111100000 0000
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhcccc-CCccc---ccccCCCCHHHHHHHHHHHhhCCCCCcEEE
Q 000379 343 AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG-FDYSK---AVDLGYISTKLHELLQLFLSFGKSTQVLCI 418 (1604)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~---~~~~~~~s~K~~~L~~lL~~~~~~~~~~~I 418 (1604)
...-..... ....+..- ...+...+...+ +.... ..... .......+.|++.+..+|..+.. .+.++|
T Consensus 479 s~~v~~i~n-g~~~~l~G----i~iLrkICnHPd--ll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~k-qg~rvl 550 (923)
T KOG0387|consen 479 SSEVNKILN-GKRNCLSG----IDILRKICNHPD--LLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKK-QGDRVL 550 (923)
T ss_pred hHHHHHHHc-CCccceec----hHHHHhhcCCcc--cccCcccccccCCCcCCChhhcchHHHHHHHHHHHhh-CCCEEE
Confidence 000000000 00000000 000111111000 00000 00000 00122347899999999988874 445999
Q ss_pred EEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc--eEEEEccccccccCCCCccEE
Q 000379 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV--NLLFATDVIEEGMHVPNCSYV 496 (1604)
Q Consensus 419 IFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~--~iLIaT~vleeGIDip~~nlV 496 (1604)
+|.+++.+.+.|..+|... .++.+..|.|.+ +...|...+++|.+++. -+|++|.|++-|+|+..+|-|
T Consensus 551 lFsqs~~mLdilE~fL~~~---~~ysylRmDGtT------~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRV 621 (923)
T KOG0387|consen 551 LFSQSRQMLDILESFLRRA---KGYSYLRMDGTT------PAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRV 621 (923)
T ss_pred EehhHHHHHHHHHHHHHhc---CCceEEEecCCC------ccchhhHHHHhhcCCCceEEEEEEecccccccccccCceE
Confidence 9999999999999999863 588999999984 78889999999998863 367899999999999999999
Q ss_pred EEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHHHHH
Q 000379 497 IRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQRNK 536 (1604)
Q Consensus 497 I~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~~~~ 536 (1604)
|.||+.||+..-.|.+-||.|.|++ ++-|+..|..++.-.
T Consensus 622 IIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY 665 (923)
T KOG0387|consen 622 IIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIY 665 (923)
T ss_pred EEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHH
Confidence 9999999999999999999999986 666778888876543
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.94 E-value=3.3e-25 Score=265.82 Aligned_cols=315 Identities=17% Similarity=0.237 Sum_probs=187.8
Q ss_pred HHHHHHHHhhcc---CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc-------C
Q 000379 49 YQLKVFEVAKRR---NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-------D 118 (1604)
Q Consensus 49 yQ~e~l~~~l~~---n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~-------~ 118 (1604)
||.++++.+.+. ++++++|||+|||.++++++.. .+.+++|++|+++|++||++.++.++ +
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~ 71 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---------GENDTIALYPTNALIEDQTEAIKEFVDVFKPERD 71 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 699999999853 3788999999999999887653 12347999999999999999999876 4
Q ss_pred CcEEEEECCCCCC--ccc--------hh----HHHH--hcCCCcEEEEcHHHHHHHHHhcCc--------CccceeEEEE
Q 000379 119 FEVEEYYGAKGVD--EWD--------SQ----CWQK--EINKNDVLVMTPQILLDALRKAFL--------SLDIVCFIVI 174 (1604)
Q Consensus 119 ~~v~~~~G~~~~~--~~~--------~~----~w~~--~~~~~~ViV~T~q~Ll~~l~~~~~--------~l~~i~llI~ 174 (1604)
..+..+.|....+ .|. .+ .++. ....+.|+++||++|..++.+.+. .+..+++|||
T Consensus 72 ~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 72 VNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred ceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 5666777753222 111 00 0111 124688999999999776654321 1468899999
Q ss_pred eCcccccCCChH-----HHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhh--cCCceeeccchhhhh
Q 000379 175 DECHHATGNHPY-----TKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELEST--LDSQVFTIEDKTEME 247 (1604)
Q Consensus 175 DEaH~~~~~~~~-----~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~--l~~~i~t~~~~~~l~ 247 (1604)
||+|.+...... ...+.. .......+++++|||||.. .....|+.. ++..+..+....
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~i~lSAT~~~-----------~~~~~l~~~~~~~~~~~~v~g~~--- 216 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQL-IRFFECRRKFVFLSATPDP-----------ALILRLQNAKQAGVKIAPIDGEK--- 216 (357)
T ss_pred ecccccCcccchhhhhhhHHHHH-HHhhhcCCcEEEEecCCCH-----------HHHHHHHhccccCceeeeecCcc---
Confidence 999998743211 122221 1112235899999999852 223444433 222211111100
Q ss_pred hccCCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 000379 248 VFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLI 327 (1604)
Q Consensus 248 ~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~ 327 (1604)
+.+...+. +....+. ..|.
T Consensus 217 ----------~~~~~~~~----~~~~~~~-----------------~~~~------------------------------ 235 (357)
T TIGR03158 217 ----------YQFPDNPE----LEADNKT-----------------QSFR------------------------------ 235 (357)
T ss_pred ----------cccCCChh----hhccccc-----------------cccc------------------------------
Confidence 00000000 0000000 0000
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHH-
Q 000379 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLF- 406 (1604)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL- 406 (1604)
.++..+... ... ........+..+.+.+
T Consensus 236 -----------------------------------~~~~~i~~~-------~~~---------~~~~~~~~l~~l~~~i~ 264 (357)
T TIGR03158 236 -----------------------------------PVLPPVELE-------LIP---------APDFKEEELSELAEEVI 264 (357)
T ss_pred -----------------------------------eeccceEEE-------EEe---------CCchhHHHHHHHHHHHH
Confidence 000000000 000 0000001112222222
Q ss_pred HhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEcccccc
Q 000379 407 LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEE 486 (1604)
Q Consensus 407 ~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vlee 486 (1604)
+.+....+.++||||+++..++.+++.|+... .++.+..+||. +++.+|.++ ++.+|||||+++++
T Consensus 265 ~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~--~~~~~~~l~g~------~~~~~R~~~------~~~~iLVaTdv~~r 330 (357)
T TIGR03158 265 ERFRQLPGERGAIILDSLDEVNRLSDLLQQQG--LGDDIGRITGF------APKKDRERA------MQFDILLGTSTVDV 330 (357)
T ss_pred HHHhccCCCeEEEEECCHHHHHHHHHHHhhhC--CCceEEeeecC------CCHHHHHHh------ccCCEEEEecHHhc
Confidence 12212345689999999999999999998731 23567889998 778777543 47899999999999
Q ss_pred ccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 487 GMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 487 GIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
|||+|.. .|| ++ |.+..+|+||+||+|
T Consensus 331 GiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 331 GVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999976 566 56 899999999999986
No 75
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=1.7e-25 Score=288.63 Aligned_cols=307 Identities=17% Similarity=0.173 Sum_probs=204.6
Q ss_pred HHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECC
Q 000379 49 YQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGA 127 (1604)
Q Consensus 49 yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~ 127 (1604)
+-.++++.+. ++++|++++||||||.++.+++.+... .+.+++++.|++.++.|.++.+.+.++..++..+|-
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 3345555555 478999999999999999988765432 335799999999999999999987665443333331
Q ss_pred C-CCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccc-ccCCChHHHHHHHHHhhcCCCCcEEE
Q 000379 128 K-GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH-ATGNHPYTKIMKEFYHKSDNKPKVFG 205 (1604)
Q Consensus 128 ~-~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~-~~~~~~~~~im~~~~~~~~~~p~iLg 205 (1604)
. ..+. ..-.+.+|+|+|+++|++.+.+. ..++++++|||||+|. .....-.-.+++..........+++.
T Consensus 80 ~vr~~~-------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIl 151 (819)
T TIGR01970 80 RVRGEN-------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILA 151 (819)
T ss_pred EEcccc-------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEE
Confidence 1 0011 11235799999999999988864 5789999999999995 44322222233333333445679999
Q ss_pred EeccCCCCCCCCCcccHHHHHHHHHhhcC-CceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhhchh
Q 000379 206 MTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284 (1604)
Q Consensus 206 LTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~ 284 (1604)
||||... ..+.+.++ +.+.....+. .| ...+|.+..
T Consensus 152 mSATl~~--------------~~l~~~l~~~~vI~~~gr~-------~p--Ve~~y~~~~-------------------- 188 (819)
T TIGR01970 152 MSATLDG--------------ERLSSLLPDAPVVESEGRS-------FP--VEIRYLPLR-------------------- 188 (819)
T ss_pred EeCCCCH--------------HHHHHHcCCCcEEEecCcc-------ee--eeeEEeecc--------------------
Confidence 9999642 12333332 2222111110 01 001110000
Q ss_pred HHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHH
Q 000379 285 LSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEV 364 (1604)
Q Consensus 285 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (1604)
.. ..+..
T Consensus 189 ----------------~~--------------------------------------------------------~~~~~- 195 (819)
T TIGR01970 189 ----------------GD--------------------------------------------------------QRLED- 195 (819)
T ss_pred ----------------hh--------------------------------------------------------hhHHH-
Confidence 00 00000
Q ss_pred HHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCee
Q 000379 365 LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT 444 (1604)
Q Consensus 365 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~ 444 (1604)
.....+..++.. ....+|||++++..+..+++.|.+... .++.
T Consensus 196 --------------------------------~v~~~l~~~l~~----~~g~iLVFlpg~~eI~~l~~~L~~~~~-~~~~ 238 (819)
T TIGR01970 196 --------------------------------AVSRAVEHALAS----ETGSILVFLPGQAEIRRVQEQLAERLD-SDVL 238 (819)
T ss_pred --------------------------------HHHHHHHHHHHh----cCCcEEEEECCHHHHHHHHHHHHhhcC-CCcE
Confidence 000111122221 124799999999999999999976311 3678
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCC------------------HH
Q 000379 445 VAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT------------------VS 506 (1604)
Q Consensus 445 ~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s------------------~~ 506 (1604)
+..+||. |++++|.++++.|++|+.+|||||+++|.|||||++++||+++.+.. ..
T Consensus 239 v~pLHg~------L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 312 (819)
T TIGR01970 239 ICPLYGE------LSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQA 312 (819)
T ss_pred EEEecCC------CCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHH
Confidence 8999999 99999999999999999999999999999999999999999998752 35
Q ss_pred HHHHHhhhhcccCc-eEEEEEec
Q 000379 507 SYIQSRGRARQHNS-QFILMLER 528 (1604)
Q Consensus 507 syiQr~GRA~R~gs-~~i~~v~~ 528 (1604)
+++||+|||||.+. .+|.|+++
T Consensus 313 sa~QR~GRAGR~~~G~cyrL~t~ 335 (819)
T TIGR01970 313 SATQRAGRAGRLEPGVCYRLWSE 335 (819)
T ss_pred HHHhhhhhcCCCCCCEEEEeCCH
Confidence 69999999999864 47777663
No 76
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=9.2e-27 Score=258.66 Aligned_cols=325 Identities=19% Similarity=0.215 Sum_probs=248.1
Q ss_pred CCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh---hc
Q 000379 42 INFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---HT 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---~~ 117 (1604)
..-+|.|.|+..++.++. +++...+-||+|||.++++++.+.+.... ..+-+++++.||++|+.|..+.+++ .+
T Consensus 40 g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--~~g~RalilsptreLa~qtlkvvkdlgrgt 117 (529)
T KOG0337|consen 40 GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--QTGLRALILSPTRELALQTLKVVKDLGRGT 117 (529)
T ss_pred hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--ccccceeeccCcHHHHHHHHHHHHHhcccc
Confidence 345799999999999985 78888899999999999999888775332 3456799999999999999888876 46
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
+++...++|+.+.. +.|..+.++.|||++||++++.....-.+.++.+.+|||||++++... .|...+.+.+...
T Consensus 118 ~lr~s~~~ggD~~e----eqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem-gfqeql~e~l~rl 192 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIE----EQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM-GFQEQLHEILSRL 192 (529)
T ss_pred chhhhhhcccchHH----HHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh-hhHHHHHHHHHhC
Confidence 78999888876654 368888889999999999998887777788999999999999999764 5777777777776
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhc-cCCcceeeeeccCCCccccchhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVF-VPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~-~~~p~e~~~~y~~~~~~~~~l~~~~~~ 276 (1604)
+...+.+.||||.... |- +..+- ...|..+.+..
T Consensus 193 ~~~~QTllfSatlp~~---------------lv--------------~fakaGl~~p~lVRldv---------------- 227 (529)
T KOG0337|consen 193 PESRQTLLFSATLPRD---------------LV--------------DFAKAGLVPPVLVRLDV---------------- 227 (529)
T ss_pred CCcceEEEEeccCchh---------------hH--------------HHHHccCCCCceEEeeh----------------
Confidence 6666999999995421 00 00000 00011000000
Q ss_pred hhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000379 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1604)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1604)
..++.
T Consensus 228 -----------------------etkis---------------------------------------------------- 232 (529)
T KOG0337|consen 228 -----------------------ETKIS---------------------------------------------------- 232 (529)
T ss_pred -----------------------hhhcc----------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
+.+... +. ......|...|+.++..... +.+++|||.++..++.+..+|..
T Consensus 233 ------e~lk~~--f~-------------------~~~~a~K~aaLl~il~~~~~--~~~t~vf~~tk~hve~~~~ll~~ 283 (529)
T KOG0337|consen 233 ------ELLKVR--FF-------------------RVRKAEKEAALLSILGGRIK--DKQTIVFVATKHHVEYVRGLLRD 283 (529)
T ss_pred ------hhhhhh--ee-------------------eeccHHHHHHHHHHHhcccc--ccceeEEecccchHHHHHHHHHh
Confidence 000000 00 00114678888888876643 45899999999999999999988
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
.++.+..+.|. |++..|..-+.+|+.++.++||.|+++.+|+|||-.+.||+||.|.+..-|+||+||+.
T Consensus 284 ----~g~~~s~iyss------lD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~a 353 (529)
T KOG0337|consen 284 ----FGGEGSDIYSS------LDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVA 353 (529)
T ss_pred ----cCCCccccccc------cChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchh
Confidence 46778888887 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCce--EEEEEeccCHH
Q 000379 517 QHNSQ--FILMLERGNLK 532 (1604)
Q Consensus 517 R~gs~--~i~~v~~~~~~ 532 (1604)
|+|+. +|-+|...+.-
T Consensus 354 ragrtg~aYs~V~~~~~~ 371 (529)
T KOG0337|consen 354 RAGRTGRAYSLVASTDDP 371 (529)
T ss_pred hccccceEEEEEecccch
Confidence 99964 66676655443
No 77
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.94 E-value=9.4e-26 Score=258.51 Aligned_cols=326 Identities=19% Similarity=0.213 Sum_probs=229.7
Q ss_pred CCCCCcHHHHHHHHHhh--ccCEEEEeCCCChHHHHHHHH-HHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh--
Q 000379 42 INFIPRIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVML-IKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH-- 116 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l--~~n~Iv~~~TGsGKTliaill-i~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~-- 116 (1604)
..-++.|.|.-+++.-+ +.|.+|+.+|+||||+|+-+. |..++. .+++.+||||.++|++|.++.|++.
T Consensus 213 G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~------~g~KmlfLvPLVALANQKy~dF~~rYs 286 (830)
T COG1202 213 GIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS------GGKKMLFLVPLVALANQKYEDFKERYS 286 (830)
T ss_pred CcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh------CCCeEEEEehhHHhhcchHHHHHHHhh
Confidence 35678999999999875 799999999999999999874 444443 4667999999999999999999874
Q ss_pred -cCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC---ChHHHHHHH
Q 000379 117 -TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN---HPYTKIMKE 192 (1604)
Q Consensus 117 -~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~---~~~~~im~~ 192 (1604)
+++.+.+-+|...+.....-.-..--.++||||+||+-+-.+++.| -.+.++..||+||+|.+-.. |..-..+..
T Consensus 287 ~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~R 365 (830)
T COG1202 287 KLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGR 365 (830)
T ss_pred cccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHH
Confidence 5788888888765543211111112246899999999998888877 67899999999999999753 222222222
Q ss_pred HHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhh
Q 000379 193 FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1604)
Q Consensus 193 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~ 272 (1604)
+ ...-+..+.++||||..+. .+|...|+++......| |-|.+..+.+......
T Consensus 366 L-r~l~~~AQ~i~LSATVgNp-------------~elA~~l~a~lV~y~~R-------PVplErHlvf~~~e~e------ 418 (830)
T COG1202 366 L-RYLFPGAQFIYLSATVGNP-------------EELAKKLGAKLVLYDER-------PVPLERHLVFARNESE------ 418 (830)
T ss_pred H-HHhCCCCeEEEEEeecCCh-------------HHHHHHhCCeeEeecCC-------CCChhHeeeeecCchH------
Confidence 1 1122467999999997643 46666777655443332 2233333332211110
Q ss_pred hhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000379 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1604)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1604)
+. ++..++
T Consensus 419 -----------------------------K~-~ii~~L------------------------------------------ 426 (830)
T COG1202 419 -----------------------------KW-DIIARL------------------------------------------ 426 (830)
T ss_pred -----------------------------HH-HHHHHH------------------------------------------
Confidence 00 000000
Q ss_pred hhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHH
Q 000379 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1604)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~ 432 (1604)
...+|. . .....-..++|||+++|..+..|+.
T Consensus 427 ---~k~E~~-----~----------------------------------------~sskg~rGQtIVFT~SRrr~h~lA~ 458 (830)
T COG1202 427 ---VKREFS-----T----------------------------------------ESSKGYRGQTIVFTYSRRRCHELAD 458 (830)
T ss_pred ---HHHHHh-----h----------------------------------------hhccCcCCceEEEecchhhHHHHHH
Confidence 000000 0 0000122479999999999999999
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEE---EcCC-CCCHHHH
Q 000379 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI---RFDL-PKTVSSY 508 (1604)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI---~fD~-p~s~~sy 508 (1604)
.|.. .++++..+|+. |+..+|+.+...|.++++.++|+|.+++-|+|+|+-.+|+ -+.. .-|+..|
T Consensus 459 ~L~~----kG~~a~pYHaG------L~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF 528 (830)
T COG1202 459 ALTG----KGLKAAPYHAG------LPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREF 528 (830)
T ss_pred Hhhc----CCcccccccCC------CcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHH
Confidence 9987 58899999988 9999999999999999999999999999999999755442 1233 3499999
Q ss_pred HHHhhhhcccC----ceEEEEEeccCH
Q 000379 509 IQSRGRARQHN----SQFILMLERGNL 531 (1604)
Q Consensus 509 iQr~GRA~R~g----s~~i~~v~~~~~ 531 (1604)
.|+.|||||.+ .++++|+++|..
T Consensus 529 ~QM~GRAGRp~yHdrGkVyllvepg~~ 555 (830)
T COG1202 529 QQMLGRAGRPDYHDRGKVYLLVEPGKK 555 (830)
T ss_pred HHHhcccCCCCcccCceEEEEecCChh
Confidence 99999999998 468999998744
No 78
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.94 E-value=3.6e-25 Score=278.76 Aligned_cols=317 Identities=18% Similarity=0.232 Sum_probs=200.4
Q ss_pred cHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHH---------HHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 47 RIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKD---------IAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 47 r~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~---------~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
...|.++++.++ ++++|+.++||||||.+.-.++.+ .++........+.+++++||++|+.|...++.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 346777788776 599999999999999874333322 1111111234457999999999999999998765
Q ss_pred c------CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHH
Q 000379 117 T------DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIM 190 (1604)
Q Consensus 117 ~------~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im 190 (1604)
. +.++...+|+... ..+.......+|+|+|++.. ...++++++|||||||...... .++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-----~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~---Dll 310 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-----ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG---DII 310 (675)
T ss_pred hCccccCCceEEEEECCcch-----HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch---hHH
Confidence 4 3457778888652 11222334679999997632 1246789999999999986543 223
Q ss_pred HHHHhhc-CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcC-CceeeccchhhhhhccCCcceeeeeccCCCcccc
Q 000379 191 KEFYHKS-DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS 268 (1604)
Q Consensus 191 ~~~~~~~-~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~ 268 (1604)
..+.... ...++++.||||+.. .+..+...++ +....+..+ ...|. ...|-......
T Consensus 311 L~llk~~~~~~rq~ILmSATl~~------------dv~~l~~~~~~p~~I~I~gr------t~~pV--~~~yi~~~~~~- 369 (675)
T PHA02653 311 IAVARKHIDKIRSLFLMTATLED------------DRDRIKEFFPNPAFVHIPGG------TLFPI--SEVYVKNKYNP- 369 (675)
T ss_pred HHHHHHhhhhcCEEEEEccCCcH------------hHHHHHHHhcCCcEEEeCCC------cCCCe--EEEEeecCccc-
Confidence 3233222 233589999999631 2334444443 222211110 00011 11110000000
Q ss_pred chhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Q 000379 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348 (1604)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 348 (1604)
...
T Consensus 370 -------------------------------~~~---------------------------------------------- 372 (675)
T PHA02653 370 -------------------------------KNK---------------------------------------------- 372 (675)
T ss_pred -------------------------------ccc----------------------------------------------
Confidence 000
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHH
Q 000379 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAK 428 (1604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~ 428 (1604)
..++. ..| ..+...+.......+.++|||++++..++
T Consensus 373 ---------~~y~~---------------------------------~~k-~~~l~~L~~~~~~~~g~iLVFlpg~~ei~ 409 (675)
T PHA02653 373 ---------RAYIE---------------------------------EEK-KNIVTALKKYTPPKGSSGIVFVASVSQCE 409 (675)
T ss_pred ---------hhhhH---------------------------------HHH-HHHHHHHHHhhcccCCcEEEEECcHHHHH
Confidence 00000 000 00111111111112347999999999999
Q ss_pred HHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHH-hCCCceEEEEccccccccCCCCccEEEEcC---CCC-
Q 000379 429 VVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESF-RGGKVNLLFATDVIEEGMHVPNCSYVIRFD---LPK- 503 (1604)
Q Consensus 429 ~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~F-r~g~~~iLIaT~vleeGIDip~~nlVI~fD---~p~- 503 (1604)
.+.+.|.+.. .++.+..+||. |+++ ++++++| ++|+.+|||||+++|+|||||++++||++| .|.
T Consensus 410 ~l~~~L~~~~--~~~~v~~LHG~------Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~ 479 (675)
T PHA02653 410 EYKKYLEKRL--PIYDFYIIHGK------VPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEP 479 (675)
T ss_pred HHHHHHHhhc--CCceEEeccCC------cCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCc
Confidence 9999998641 35789999998 7764 4677887 789999999999999999999999999998 565
Q ss_pred --------CHHHHHHHhhhhcccCc-eEEEEEecc
Q 000379 504 --------TVSSYIQSRGRARQHNS-QFILMLERG 529 (1604)
Q Consensus 504 --------s~~syiQr~GRA~R~gs-~~i~~v~~~ 529 (1604)
|..+|+||+|||||... .++.|+++.
T Consensus 480 ~~g~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~ 514 (675)
T PHA02653 480 FGGKEMFISKSMRTQRKGRVGRVSPGTYVYFYDLD 514 (675)
T ss_pred ccCcccccCHHHHHHhccCcCCCCCCeEEEEECHH
Confidence 88899999999999864 477777644
No 79
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=7.4e-25 Score=292.06 Aligned_cols=299 Identities=18% Similarity=0.216 Sum_probs=198.9
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--- 117 (1604)
..++|+++|.++++.++ ++|+++++|||+|||..++.++..+.. .+.+++||+||++|+.|+++.++.+.
T Consensus 77 ~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~------~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 77 TGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAK------KGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred cCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHh------cCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 45689999999999887 589999999999999754443333221 35679999999999999999999865
Q ss_pred CCcEEEEECCCCCC-ccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-Ch---------
Q 000379 118 DFEVEEYYGAKGVD-EWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HP--------- 185 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~-~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~--------- 185 (1604)
++.+..++|+.+.. ....+.+.... +.++|+|+||+.|.+.+. .+...++++||+||||++.+. +.
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lG 228 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLG 228 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCC
Confidence 56777777765432 11122233333 368999999999998776 456677999999999999852 11
Q ss_pred HH-HHHHHHHhhcC------------------------CCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeec
Q 000379 186 YT-KIMKEFYHKSD------------------------NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI 240 (1604)
Q Consensus 186 ~~-~im~~~~~~~~------------------------~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~ 240 (1604)
+. ..+...+...+ ...+++.+|||..... .. ..-+...++ +.+
T Consensus 229 F~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~-------~~--~~l~~~ll~---~~v 296 (1176)
T PRK09401 229 FSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRG-------NR--VKLFRELLG---FEV 296 (1176)
T ss_pred CCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccc-------hH--HHHhhccce---EEe
Confidence 10 11111111111 1344555666642110 00 000000000 000
Q ss_pred cchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000379 241 EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYC 320 (1604)
Q Consensus 241 ~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (1604)
. ++
T Consensus 297 ~----------~~------------------------------------------------------------------- 299 (1176)
T PRK09401 297 G----------SP------------------------------------------------------------------- 299 (1176)
T ss_pred c----------Cc-------------------------------------------------------------------
Confidence 0 00
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHH
Q 000379 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLH 400 (1604)
Q Consensus 321 ~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~ 400 (1604)
...... +.+ .. . ....|..
T Consensus 300 ------------------------------------------------~~~~rn----I~~---~y---i---~~~~k~~ 318 (1176)
T PRK09401 300 ------------------------------------------------VFYLRN----IVD---SY---I---VDEDSVE 318 (1176)
T ss_pred ------------------------------------------------ccccCC----ceE---EE---E---EcccHHH
Confidence 000000 000 00 0 0014666
Q ss_pred HHHHHHHhhCCCCCcEEEEEEchHHH---HHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceE
Q 000379 401 ELLQLFLSFGKSTQVLCIIFVERIIA---AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477 (1604)
Q Consensus 401 ~L~~lL~~~~~~~~~~~IIFv~~r~t---a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~i 477 (1604)
.|.+++...+ ..+||||+++.. |+.|.+.|.. .++++..+||+ | .+.+++|++|+++|
T Consensus 319 ~L~~ll~~l~----~~~LIFv~t~~~~~~ae~l~~~L~~----~gi~v~~~hg~------l-----~~~l~~F~~G~~~V 379 (1176)
T PRK09401 319 KLVELVKRLG----DGGLIFVPSDKGKEYAEELAEYLED----LGINAELAISG------F-----ERKFEKFEEGEVDV 379 (1176)
T ss_pred HHHHHHHhcC----CCEEEEEecccChHHHHHHHHHHHH----CCCcEEEEeCc------H-----HHHHHHHHCCCCCE
Confidence 7777776543 369999999887 9999999988 47899999998 5 23469999999999
Q ss_pred EEE----ccccccccCCCC-ccEEEEcCCCC------CHHHHHHHhhhhcc
Q 000379 478 LFA----TDVIEEGMHVPN-CSYVIRFDLPK------TVSSYIQSRGRARQ 517 (1604)
Q Consensus 478 LIa----T~vleeGIDip~-~nlVI~fD~p~------s~~syiQr~GRA~R 517 (1604)
||| |+++++|||+|+ +++||+||.|. ....|.+|.||+-+
T Consensus 380 LVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 380 LVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 999 699999999999 89999999999 67889999999964
No 80
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.93 E-value=6.1e-25 Score=284.39 Aligned_cols=305 Identities=16% Similarity=0.194 Sum_probs=201.7
Q ss_pred HHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC----cEE
Q 000379 48 IYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF----EVE 122 (1604)
Q Consensus 48 ~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~----~v~ 122 (1604)
.+-.++++.+. ++++|+.++||||||.++.+++.+.. ..+.++++++||+.++.|.++.+.+.++. .|+
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~------~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG------GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC------CcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 33445555554 47899999999999999988765432 12346999999999999999999776654 444
Q ss_pred EEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc-CCChHHHHHHHHHhhcCCCC
Q 000379 123 EYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT-GNHPYTKIMKEFYHKSDNKP 201 (1604)
Q Consensus 123 ~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~-~~~~~~~im~~~~~~~~~~p 201 (1604)
..+++.... -...+|+|+|+++|++.+.+. ..++++++|||||+|... ...-.-..+.+.........
T Consensus 82 y~vr~~~~~----------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~l 150 (812)
T PRK11664 82 YRMRAESKV----------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDL 150 (812)
T ss_pred EEecCcccc----------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccc
Confidence 444433211 125689999999999988864 578999999999999742 21111122222222334567
Q ss_pred cEEEEeccCCCCCCCCCcccHHHHHHHHHhhcC-CceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhh
Q 000379 202 KVFGMTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280 (1604)
Q Consensus 202 ~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~ 280 (1604)
++++||||+.. ..+...+. +.+.....+. .| ...+|.+
T Consensus 151 qlilmSATl~~--------------~~l~~~~~~~~~I~~~gr~-------~p--V~~~y~~------------------ 189 (812)
T PRK11664 151 KLLIMSATLDN--------------DRLQQLLPDAPVIVSEGRS-------FP--VERRYQP------------------ 189 (812)
T ss_pred eEEEEecCCCH--------------HHHHHhcCCCCEEEecCcc-------cc--ceEEecc------------------
Confidence 99999999641 12333332 1111111100 00 0011100
Q ss_pred hchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHH
Q 000379 281 FDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYF 360 (1604)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1604)
.... .+
T Consensus 190 ------------------~~~~--------------------------------------------------------~~ 195 (812)
T PRK11664 190 ------------------LPAH--------------------------------------------------------QR 195 (812)
T ss_pred ------------------Cchh--------------------------------------------------------hh
Confidence 0000 00
Q ss_pred HHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCC
Q 000379 361 LEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL 440 (1604)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~ 440 (1604)
+... -...+.+++.. ....+|||++++..+..+.+.|.... .
T Consensus 196 ~~~~---------------------------------v~~~l~~~l~~----~~g~iLVFlpg~~ei~~l~~~L~~~~-~ 237 (812)
T PRK11664 196 FDEA---------------------------------VARATAELLRQ----ESGSLLLFLPGVGEIQRVQEQLASRV-A 237 (812)
T ss_pred HHHH---------------------------------HHHHHHHHHHh----CCCCEEEEcCCHHHHHHHHHHHHHhc-c
Confidence 0000 00011112221 23579999999999999999998621 1
Q ss_pred CCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCC----------------
Q 000379 441 THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT---------------- 504 (1604)
Q Consensus 441 ~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s---------------- 504 (1604)
.++.+..+||. |+.++|..+++.|++|+.+|||||+++|.|||||++++||+++.+..
T Consensus 238 ~~~~v~~Lhg~------l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 311 (812)
T PRK11664 238 SDVLLCPLYGA------LSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQR 311 (812)
T ss_pred CCceEEEeeCC------CCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEe
Confidence 35788899999 89999999999999999999999999999999999999999777653
Q ss_pred --HHHHHHHhhhhcccCc-eEEEEEec
Q 000379 505 --VSSYIQSRGRARQHNS-QFILMLER 528 (1604)
Q Consensus 505 --~~syiQr~GRA~R~gs-~~i~~v~~ 528 (1604)
-.+|+||+|||||.+. .+|.|+++
T Consensus 312 iSkasa~QR~GRaGR~~~G~cyrL~t~ 338 (812)
T PRK11664 312 ISQASMTQRAGRAGRLEPGICLHLYSK 338 (812)
T ss_pred echhhhhhhccccCCCCCcEEEEecCH
Confidence 3589999999999864 46777653
No 81
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=3.1e-24 Score=257.63 Aligned_cols=308 Identities=22% Similarity=0.331 Sum_probs=213.0
Q ss_pred CCCCCCCcHHHHHHHHHhhc-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH
Q 000379 40 NSINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
....|+++..|..++..+.. .|=+++++.|||||++|++.+...+. .+..+..++||--|++|.++.
T Consensus 257 ~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~------~G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 257 AALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE------AGYQAALMAPTEILAEQHYES 330 (677)
T ss_pred HhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH------cCCeeEEeccHHHHHHHHHHH
Confidence 35679999999999998863 67799999999999999999888876 566799999999999999999
Q ss_pred HHhhc---CCcEEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHH
Q 000379 113 IRVHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTK 188 (1604)
Q Consensus 113 i~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~ 188 (1604)
+++++ +++|..++|....... .+...... +..+|+|+|...+ +..+.+.++.|+|+||-|+..-. .+.
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r-~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQHRFGV~--QR~ 402 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKAR-KEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQHRFGVH--QRL 402 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHH-HHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEeccccccHH--HHH
Confidence 99976 7899999998765542 22233333 4599999998765 44677889999999999998431 111
Q ss_pred HHHHHHhhcCC-CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccc
Q 000379 189 IMKEFYHKSDN-KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG 267 (1604)
Q Consensus 189 im~~~~~~~~~-~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~ 267 (1604)
.+ ..... .|++|-|||||+... |.-+. |.--+-..+.+. |.
T Consensus 403 ~L----~~KG~~~Ph~LvMTATPIPRT--------------LAlt~----fgDldvS~IdEl-P~--------------- 444 (677)
T COG1200 403 AL----REKGEQNPHVLVMTATPIPRT--------------LALTA----FGDLDVSIIDEL-PP--------------- 444 (677)
T ss_pred HH----HHhCCCCCcEEEEeCCCchHH--------------HHHHH----hccccchhhccC-CC---------------
Confidence 11 12234 699999999998642 10000 000000000000 00
Q ss_pred cchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHH
Q 000379 268 SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEEC 347 (1604)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~ 347 (1604)
T Consensus 445 -------------------------------------------------------------------------------- 444 (677)
T COG1200 445 -------------------------------------------------------------------------------- 444 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHH-HhhCCCCCcEEEEEEchH--
Q 000379 348 EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLF-LSFGKSTQVLCIIFVERI-- 424 (1604)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL-~~~~~~~~~~~IIFv~~r-- 424 (1604)
..+.+... .+ ...+...+++.+ .+.. .+.++.+-|...
T Consensus 445 ---------------------------GRkpI~T~------~i----~~~~~~~v~e~i~~ei~--~GrQaY~VcPLIeE 485 (677)
T COG1200 445 ---------------------------GRKPITTV------VI----PHERRPEVYERIREEIA--KGRQAYVVCPLIEE 485 (677)
T ss_pred ---------------------------CCCceEEE------Ee----ccccHHHHHHHHHHHHH--cCCEEEEEeccccc
Confidence 00000000 00 001111111111 1111 233566655533
Q ss_pred ------HHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEE
Q 000379 425 ------IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498 (1604)
Q Consensus 425 ------~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~ 498 (1604)
..|..++..|+. .+++++++.+||+ |+..++.+++++|++|+++|||||.|.|.|||+|++++.|.
T Consensus 486 SE~l~l~~a~~~~~~L~~--~~~~~~vgL~HGr------m~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI 557 (677)
T COG1200 486 SEKLELQAAEELYEELKS--FLPELKVGLVHGR------MKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI 557 (677)
T ss_pred cccchhhhHHHHHHHHHH--HcccceeEEEecC------CChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE
Confidence 356677777774 3567899999999 99999999999999999999999999999999999999998
Q ss_pred cCCCC-CHHHHHHHhhhhcccCce-EEEEE
Q 000379 499 FDLPK-TVSSYIQSRGRARQHNSQ-FILML 526 (1604)
Q Consensus 499 fD~p~-s~~syiQr~GRA~R~gs~-~i~~v 526 (1604)
.|.-. -+.+.-|-|||+||-+-+ |++++
T Consensus 558 e~AERFGLaQLHQLRGRVGRG~~qSyC~Ll 587 (677)
T COG1200 558 ENAERFGLAQLHQLRGRVGRGDLQSYCVLL 587 (677)
T ss_pred echhhhhHHHHHHhccccCCCCcceEEEEE
Confidence 88654 788999999999998744 43444
No 82
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.93 E-value=6.6e-24 Score=252.46 Aligned_cols=458 Identities=18% Similarity=0.197 Sum_probs=259.8
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHH
Q 000379 35 PSSSTNSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109 (1604)
Q Consensus 35 ~~~~~~~~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~ 109 (1604)
+++......+++.+||.-.+.|+. +-|+|+++++|.|||..++..+..+.+ ...+++ =|||||...| +.|
T Consensus 389 ~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq---~g~~gp-HLVVvPsSTl-eNW 463 (941)
T KOG0389|consen 389 EQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQ---IGNPGP-HLVVVPSSTL-ENW 463 (941)
T ss_pred cCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHH---cCCCCC-cEEEecchhH-HHH
Confidence 344455567889999999999884 578899999999999999988777665 222233 5999999666 779
Q ss_pred HHHHHhhcC-CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHH-HHhcCcCccceeEEEEeCcccccCC--Ch
Q 000379 110 YDVIRVHTD-FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA-LRKAFLSLDIVCFIVIDECHHATGN--HP 185 (1604)
Q Consensus 110 ~~~i~~~~~-~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~-l~~~~~~l~~i~llI~DEaH~~~~~--~~ 185 (1604)
.++|+++++ ++|..|||+..-...-+......-..++|+|+||+..-.. -.+.++.-.+++++|+||+|.+.+. ..
T Consensus 464 lrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeR 543 (941)
T KOG0389|consen 464 LREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSER 543 (941)
T ss_pred HHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHH
Confidence 999999995 8999999975211111111222223789999999977422 2345666678999999999999754 34
Q ss_pred HHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeecc--chhhhhhccCCcceeeeeccCC
Q 000379 186 YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE--DKTEMEVFVPSAKESCRFYDQS 263 (1604)
Q Consensus 186 ~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~--~~~~l~~~~~~p~e~~~~y~~~ 263 (1604)
|...|.- +.-.+|+||+||..++ +.+-+.-|+-+| +.+|... +...+...-..+ ..
T Consensus 544 y~~LM~I------~An~RlLLTGTPLQNN-------L~ELiSLL~Fvl-P~vF~~~~~dl~~if~~k~~~--------d~ 601 (941)
T KOG0389|consen 544 YKHLMSI------NANFRLLLTGTPLQNN-------LKELISLLAFVL-PKVFDSSMEDLDVIFKAKKTS--------DG 601 (941)
T ss_pred HHHhccc------cccceEEeeCCccccc-------HHHHHHHHHHHh-hHhhhccchHHHHHHhccCCc--------cc
Confidence 5556652 4567899999999875 223333333222 2333222 111121111110 00
Q ss_pred Cccccch-hhhhhhhhhhhchhHH-HHHHhHhhh---------hhhhhhHHHHHHHHHHHHH---------------HHH
Q 000379 264 KFCGSDL-KGKLEVSWSKFDASLS-KLQGSQLNC---------YKDMDDKHKTLRKQLSDYH---------------AKI 317 (1604)
Q Consensus 264 ~~~~~~l-~~~~~~~~~~~~~~~~-~l~~~~~~~---------~~~~~~~~~~~~~~l~~~~---------------~~~ 317 (1604)
......+ .+.+.+...-+.+++. ++..+.... |-.+.+.-+.+-..+.... ..+
T Consensus 602 d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~v 681 (941)
T KOG0389|consen 602 DIENALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNV 681 (941)
T ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchH
Confidence 0000111 1112222222222222 121111111 0011111000000000000 001
Q ss_pred HHHHHHhh--hHHH-HHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCC
Q 000379 318 LYCLDELG--LICA-YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGY 394 (1604)
Q Consensus 318 ~~~~~~lG--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1604)
+..++... |..- ..+-...+..+.+.......|.... .+++.+-..-+..+-...-..................
T Consensus 682 lmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n---~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~m 758 (941)
T KOG0389|consen 682 LMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKAN---EQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWM 758 (941)
T ss_pred HHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcC---HHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhh
Confidence 11111100 0000 0000000011110000001111100 0111111111110000000000000011111223345
Q ss_pred CCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC
Q 000379 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474 (1604)
Q Consensus 395 ~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~ 474 (1604)
.|.|++.|-++|.+... .+.|++||.+.-.+.+.|..+|..+ +++...+.|.+ .-..|+..++.|...+
T Consensus 759 dSgK~r~L~~LLp~~k~-~G~RVLiFSQFTqmLDILE~~L~~l----~~~ylRLDGsT------qV~~RQ~lId~Fn~d~ 827 (941)
T KOG0389|consen 759 DSGKCRKLKELLPKIKK-KGDRVLIFSQFTQMLDILEVVLDTL----GYKYLRLDGST------QVNDRQDLIDEFNTDK 827 (941)
T ss_pred hhhhHhHHHHHHHHHhh-cCCEEEEeeHHHHHHHHHHHHHHhc----CceEEeecCCc------cchHHHHHHHhhccCC
Confidence 58999999999988763 4589999999999999999999874 78888899984 5788999999999875
Q ss_pred --ceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHH
Q 000379 475 --VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQ 533 (1604)
Q Consensus 475 --~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~ 533 (1604)
.-+|++|.+++-|||+..+|.||.||..-|+-.-.|.-.||+|.|++ ++-++.+++.++
T Consensus 828 difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 828 DIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred ceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 34678999999999999999999999999999999999999999985 677888887763
No 83
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.6e-24 Score=225.05 Aligned_cols=160 Identities=19% Similarity=0.250 Sum_probs=135.5
Q ss_pred CCCcHHHHHHHHHh-hccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc----C
Q 000379 44 FIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT----D 118 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~-l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~----~ 118 (1604)
-.|.+.|.++++.+ ++.++++.+..|.|||.++++.-.+.++ .-.+.-.++++|.|++|+.|+.++..++. +
T Consensus 63 ehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie---pv~g~vsvlvmchtrelafqi~~ey~rfskymP~ 139 (387)
T KOG0329|consen 63 EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE---PVDGQVSVLVMCHTRELAFQISKEYERFSKYMPS 139 (387)
T ss_pred CCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC---CCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCC
Confidence 35889999999876 5899999999999999999886555444 44455679999999999999999888764 6
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcC
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1604)
+++.+++||.++.. +.+... +.++|+|+||++++.+.+.+.++++++...|+|||+.+...-.+++-+++..+..+
T Consensus 140 vkvaVFfGG~~Ikk-dee~lk---~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp 215 (387)
T KOG0329|consen 140 VKVSVFFGGLFIKK-DEELLK---NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTP 215 (387)
T ss_pred ceEEEEEcceeccc-cHHHHh---CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCc
Confidence 89999999998764 222222 37899999999999999999999999999999999999988788888898887777
Q ss_pred CCCcEEEEeccC
Q 000379 199 NKPKVFGMTASP 210 (1604)
Q Consensus 199 ~~p~iLgLTATP 210 (1604)
...++..+|||.
T Consensus 216 ~~KQvmmfsatl 227 (387)
T KOG0329|consen 216 HEKQVMMFSATL 227 (387)
T ss_pred ccceeeeeeeec
Confidence 778899999995
No 84
>PRK14701 reverse gyrase; Provisional
Probab=99.92 E-value=1e-23 Score=286.29 Aligned_cols=132 Identities=21% Similarity=0.166 Sum_probs=100.8
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--- 117 (1604)
..++|+++|.++++.++ ++++++++|||+|||+.+++++..... .+.+++||+||++|+.|+++.++.+.
T Consensus 76 ~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~------~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 76 TGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL------KGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred hCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh------cCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 35589999999999987 589999999999999965554433321 34579999999999999999999854
Q ss_pred --CCcEEEEECCCCCCccchhHHHHhcC-CCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccC
Q 000379 118 --DFEVEEYYGAKGVDEWDSQCWQKEIN-KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1604)
Q Consensus 118 --~~~v~~~~G~~~~~~~~~~~w~~~~~-~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~ 182 (1604)
++++..++|+.+... ..+.|..... .++|+|+||+.|.+.+... . ..+++++|+||||++.+
T Consensus 150 ~~~v~v~~~~g~~s~~e-~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKE-KEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred CCceeEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccc
Confidence 456677888875442 2233544443 5899999999998766542 2 26799999999999975
No 85
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.91 E-value=3.5e-23 Score=255.01 Aligned_cols=445 Identities=18% Similarity=0.207 Sum_probs=252.7
Q ss_pred CCCCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhC--C-CCeEEEEEecChhhHHHHHH
Q 000379 40 NSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN--G-FKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~--~-~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
.+...++|.||+|.+.|+. +-++|+|+++|.|||+.++..+..-....+.. . ...-.||+||. .|+.-|..
T Consensus 970 ~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~ 1048 (1549)
T KOG0392|consen 970 VPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKS 1048 (1549)
T ss_pred cchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHH
Confidence 3445689999999999884 47899999999999998887554322211111 0 11228999998 99999999
Q ss_pred HHHhhcCC-cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-ChHHHH
Q 000379 112 VIRVHTDF-EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKI 189 (1604)
Q Consensus 112 ~i~~~~~~-~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~i 189 (1604)
++.+++++ +|..++|.-. .+...+..+.+++|+|++|+++.+.+. ++.-.+|+++|+||.|-+.+. .-....
T Consensus 1049 E~~kf~pfL~v~~yvg~p~----~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~ktkl~ka 1122 (1549)
T KOG0392|consen 1049 EVKKFFPFLKVLQYVGPPA----ERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNSKTKLTKA 1122 (1549)
T ss_pred HHHHhcchhhhhhhcCChH----HHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecchHHHHHHH
Confidence 99999985 7777887642 223445666789999999999987654 333346899999999999753 122233
Q ss_pred HHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccc
Q 000379 190 MKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1604)
Q Consensus 190 m~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~ 269 (1604)
++.+ ..-++|.||+||++|+ ...+..|...|-+..... .++--.+|. +|...... + ...+..
T Consensus 1123 vkqL-----~a~hRLILSGTPIQNn--------vleLWSLFdFLMPGfLGt-EKqFqsrf~-kpI~asRd--~-K~Sske 1184 (1549)
T KOG0392|consen 1123 VKQL-----RANHRLILSGTPIQNN--------VLELWSLFDFLMPGFLGT-EKQFQSRFG-KPILASRD--P-KSSSKE 1184 (1549)
T ss_pred HHHH-----hhcceEEeeCCCcccC--------HHHHHHHHHHhcccccCc-HHHHHHHhc-chhhhhcC--c-ccchhH
Confidence 3332 3457899999999986 223344444443322221 121111111 22111000 0 000000
Q ss_pred hh---hhhhhhhhhhchhHHHHHHhHhhhhhhhhhH-HHH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000379 270 LK---GKLEVSWSKFDASLSKLQGSQLNCYKDMDDK-HKT-------LRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338 (1604)
Q Consensus 270 l~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~-------~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~ 338 (1604)
.. -.++...+..-+++.+... ...+.+++.+ +++ +++++-+.+..... .+.+
T Consensus 1185 ~EaG~lAleaLHKqVLPF~LRRlK--edVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k---------------~~~~ 1247 (1549)
T KOG0392|consen 1185 QEAGVLALEALHKQVLPFLLRRLK--EDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAK---------------QCVS 1247 (1549)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH--HHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhc---------------cccc
Confidence 00 0122222232232221110 0112222222 111 11111111111000 0000
Q ss_pred HhhhhHHHHHH-HHHhhHHHHHHHHHHHHHHhhhcCcc---chhhccccCCcccccccCCCCHHHHHHHHHHHhhCCC--
Q 000379 339 KVLKAQEECEI-YRQSSLQCKYFLEEVLHVIGSALPLA---DKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKS-- 412 (1604)
Q Consensus 339 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~-- 412 (1604)
........... ...-..+..+|+....+...-.+... ...+.........+...-..++|+.+|.++|...+-.
T Consensus 1248 ~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~ 1327 (1549)
T KOG0392|consen 1248 SQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNN 1327 (1549)
T ss_pred cccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCC
Confidence 00000000000 00000111122211111100000000 0000000000000011113489999999999877532
Q ss_pred -----------CCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC-CceEE-E
Q 000379 413 -----------TQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG-KVNLL-F 479 (1604)
Q Consensus 413 -----------~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g-~~~iL-I 479 (1604)
.+.|++|||+-+.+.+.+.+-|.+- -.+.+....+.|. .++.+|.+++++|+++ .+.|| .
T Consensus 1328 ~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~-~mpsVtymRLDGS------Vpp~~R~kiV~~FN~DptIDvLlL 1400 (1549)
T KOG0392|consen 1328 SDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKK-YMPSVTYMRLDGS------VPPGDRQKIVERFNEDPTIDVLLL 1400 (1549)
T ss_pred CcccccCcchhccceeEEeeeHHHHHHHHHHHHhhh-hcCceeEEEecCC------CCcHHHHHHHHHhcCCCceeEEEE
Confidence 3579999999999999988866542 1233444567787 8999999999999999 68876 5
Q ss_pred EccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHH
Q 000379 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQ 533 (1604)
Q Consensus 480 aT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~ 533 (1604)
+|.|++-|+|+.+++.||.++-.||+-.-.|.+.||+|.|++ ++-++.+|..++
T Consensus 1401 TThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1401 TTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred eeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 899999999999999999999999999999999999999997 666778888763
No 86
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.91 E-value=3.8e-23 Score=265.94 Aligned_cols=156 Identities=19% Similarity=0.184 Sum_probs=121.1
Q ss_pred CCCCCCcHHHHHHHHHhhc----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 41 SINFIPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
.....++++|.++++.+.+ +++++.++||+|||.+++.++.+.+. .++++|||+|+++|+.|+.+.+++.
T Consensus 140 ~~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~------~g~~vLvLvPt~~L~~Q~~~~l~~~ 213 (679)
T PRK05580 140 FEPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA------QGKQALVLVPEIALTPQMLARFRAR 213 (679)
T ss_pred cCCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 4456899999999999975 67999999999999999988877765 3467999999999999999999999
Q ss_pred cCCcEEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC---ChH--HHHH
Q 000379 117 TDFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN---HPY--TKIM 190 (1604)
Q Consensus 117 ~~~~v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~---~~~--~~im 190 (1604)
++.++..++|+.+... ..+.|.... +..+|+|+|+..+ +..+.++++||+||+|...-. .|+ .+.+
T Consensus 214 fg~~v~~~~s~~s~~~-r~~~~~~~~~g~~~IVVgTrsal-------~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v 285 (679)
T PRK05580 214 FGAPVAVLHSGLSDGE-RLDEWRKAKRGEAKVVIGARSAL-------FLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL 285 (679)
T ss_pred hCCCEEEEECCCCHHH-HHHHHHHHHcCCCCEEEeccHHh-------cccccCCCEEEEECCCccccccCcCCCCcHHHH
Confidence 9999999999876543 345577655 4579999999876 356789999999999987522 121 1122
Q ss_pred HHHHhhcCCCCcEEEEeccCC
Q 000379 191 KEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 191 ~~~~~~~~~~p~iLgLTATP~ 211 (1604)
.. ........+++++||||.
T Consensus 286 a~-~ra~~~~~~~il~SATps 305 (679)
T PRK05580 286 AV-VRAKLENIPVVLGSATPS 305 (679)
T ss_pred HH-HHhhccCCCEEEEcCCCC
Confidence 11 112234578889999986
No 87
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=99.91 E-value=6.8e-25 Score=204.69 Aligned_cols=86 Identities=42% Similarity=0.853 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCcceEEEEecCceEEEEEEccCCCCcceeecCCCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 000379 586 SVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDH 665 (1604)
Q Consensus 586 a~~~l~~yc~~l~~d~~~~~~p~~~~~~~~~~~~~~v~LP~~~~~~~~~g~~~~~k~~Ak~~aaf~ac~~L~~~g~ld~~ 665 (1604)
|+++||+||++||+|.|+.++|.|.+...+++|+|+|+||.++|++.|.|.+|++|+.|||+|||+||++||++|+||||
T Consensus 1 Ai~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~ldd~ 80 (90)
T PF03368_consen 1 AISLLNRYCSTLPSDSFTNLKPEFEIEKIGSGFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGELDDH 80 (90)
T ss_dssp HHHHHHHHHTTSSS-TT--SS-EEEEEE--G-EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S-TTT
T ss_pred CHHHHHHHHhcCCCCCCccCCceEEEEEcCCcEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 78999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 000379 666 LLPSVE 671 (1604)
Q Consensus 666 L~P~~~ 671 (1604)
|+|..+
T Consensus 81 L~P~~~ 86 (90)
T PF03368_consen 81 LLPISK 86 (90)
T ss_dssp S--HHH
T ss_pred cCCCCC
Confidence 999864
No 88
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.91 E-value=6.5e-23 Score=256.20 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...+++.+.+.. ....++||||+++..++.+.+.|.+ .++.+..+||. +.++++..+..+|+.|
T Consensus 407 ~~K~~ai~~~i~~~~-~~~~pvLIft~s~~~se~ls~~L~~----~gi~~~~L~a~------~~~~E~~ii~~ag~~g-- 473 (762)
T TIGR03714 407 PEKLMATLEDVKEYH-ETGQPVLLITGSVEMSEIYSELLLR----EGIPHNLLNAQ------NAAKEAQIIAEAGQKG-- 473 (762)
T ss_pred HHHHHHHHHHHHHHh-hCCCCEEEEECcHHHHHHHHHHHHH----CCCCEEEecCC------ChHHHHHHHHHcCCCC--
Confidence 578888988886543 2345899999999999999999988 47889999998 6788877777777776
Q ss_pred eEEEEccccccccCCC---------CccEEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEec
Q 000379 476 NLLFATDVIEEGMHVP---------NCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLER 528 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip---------~~nlVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~ 528 (1604)
.|+|||+++++|+||+ ++++|++|++|..... +||+||+||.|.. .+.|+..
T Consensus 474 ~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~ 536 (762)
T TIGR03714 474 AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSL 536 (762)
T ss_pred eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEcc
Confidence 7999999999999999 9999999999998766 9999999999954 5555554
No 89
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=1.9e-23 Score=255.53 Aligned_cols=380 Identities=18% Similarity=0.242 Sum_probs=235.8
Q ss_pred ccccccCCCCCCCCCCCCCC--CCCCCCCCCCCC--CCCCCCCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHH
Q 000379 7 SLKRSFGEVHSPNPPDMGSS--GHDHAVDGPSSS--TNSINFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLI 80 (1604)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli 80 (1604)
...+.|+|+..|+...+... +.-.-.+-+... ..-..-+....|.++|+.+-+ .|.||++|||+|||.+|.+.|
T Consensus 68 ~~~~~~eE~~~P~s~~~~~~~~k~~~isdld~~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~I 147 (1230)
T KOG0952|consen 68 EDYKTYEEVKIPASVPMPMDGEKLLSISDLDDVGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCI 147 (1230)
T ss_pred cccCcceEEecCccCCCccccccceeEEecchhhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHH
Confidence 56678888888885555421 111111111111 222233567899999999975 999999999999999999999
Q ss_pred HHHHHHHh----hCCCCeEEEEEecChhhHHHHHHHHHhhc---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHH
Q 000379 81 KDIAQAIK----SNGFKKLIIFLAPTVHLVHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153 (1604)
Q Consensus 81 ~~~~~~~~----~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q 153 (1604)
.+.+.+.. .....-++++++|+++||....+.+.+.+ |+.|..++|++... ......++|||+||+
T Consensus 148 Lr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~-------~tei~~tqiiVTTPE 220 (1230)
T KOG0952|consen 148 LRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLT-------KTEIADTQIIVTTPE 220 (1230)
T ss_pred HHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhh-------HHHHHhcCEEEeccc
Confidence 88876411 12345579999999999999998887754 79999999987543 233568999999999
Q ss_pred HHHHHHHhc----CcCccceeEEEEeCcccccCCC-h-HHHHHHHHHh---hcCCCCcEEEEeccCCCCCCCCCcccHHH
Q 000379 154 ILLDALRKA----FLSLDIVCFIVIDECHHATGNH-P-YTKIMKEFYH---KSDNKPKVFGMTASPVVRKGVSSAMDCEG 224 (1604)
Q Consensus 154 ~Ll~~l~~~----~~~l~~i~llI~DEaH~~~~~~-~-~~~im~~~~~---~~~~~p~iLgLTATP~~~~~~~~~~~~~~ 224 (1604)
.+ +...+. .-.++.+.|||+||+|.+.++. | ...|+.+... .....-||+|||||..+
T Consensus 221 Kw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN------------ 287 (1230)
T KOG0952|consen 221 KW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPN------------ 287 (1230)
T ss_pred ce-eeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCC------------
Confidence 87 222221 1235778999999999997652 2 2223333322 23456899999999542
Q ss_pred HHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHH
Q 000379 225 QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHK 304 (1604)
Q Consensus 225 ~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 304 (1604)
+.++..+|... |.....+|+.. +.+..+.+.+
T Consensus 288 -~eDvA~fL~vn----------------~~~glfsFd~~-yRPvpL~~~~------------------------------ 319 (1230)
T KOG0952|consen 288 -YEDVARFLRVN----------------PYAGLFSFDQR-YRPVPLTQGF------------------------------ 319 (1230)
T ss_pred -HHHHHHHhcCC----------------Cccceeeeccc-ccccceeeeE------------------------------
Confidence 34455555421 11222222210 0000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccC
Q 000379 305 TLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF 384 (1604)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 384 (1604)
+|..+. +. ......++
T Consensus 320 -------------------iG~k~~------------~~-----------~~~~~~~d---------------------- 335 (1230)
T KOG0952|consen 320 -------------------IGIKGK------------KN-----------RQQKKNID---------------------- 335 (1230)
T ss_pred -------------------Eeeecc------------cc-----------hhhhhhHH----------------------
Confidence 000000 00 00000000
Q ss_pred CcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcC-------------
Q 000379 385 DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS------------- 451 (1604)
Q Consensus 385 ~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~------------- 451 (1604)
.-...++.+.+. .+.+++|||.+|..+...++.|.+.....+....++++.
T Consensus 336 -----------~~~~~kv~e~~~-----~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~ 399 (1230)
T KOG0952|consen 336 -----------EVCYDKVVEFLQ-----EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGM 399 (1230)
T ss_pred -----------HHHHHHHHHHHH-----cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhh
Confidence 112223333332 245899999999888777777765322223333333332
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEE----cCCCC------CHHHHHHHhhhhcccC--
Q 000379 452 TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR----FDLPK------TVSSYIQSRGRARQHN-- 519 (1604)
Q Consensus 452 ~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~----fD~p~------s~~syiQr~GRA~R~g-- 519 (1604)
+.++.+|...+|..+.+-|..|.++||+||+.++.|+|+|+--++|. ||... +.-.-+|..|||||.+
T Consensus 400 ~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 400 GIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred hhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 22346799999999999999999999999999999999997666663 55444 4567799999999986
Q ss_pred --ceEEEEEeccCHHHH
Q 000379 520 --SQFILMLERGNLKQR 534 (1604)
Q Consensus 520 --s~~i~~v~~~~~~~~ 534 (1604)
+..++|.+.+...+.
T Consensus 480 ~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 480 SSGEGIIITTRDKLDHY 496 (1230)
T ss_pred CCceEEEEecccHHHHH
Confidence 246677665545443
No 90
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=2.2e-22 Score=254.17 Aligned_cols=121 Identities=14% Similarity=0.162 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...|++.+.... ....++||||+++..++.|...|.+ .++.+..+||. +..+++..+..+++.|
T Consensus 411 ~~K~~al~~~i~~~~-~~~~pvLIf~~t~~~se~l~~~L~~----~gi~~~~L~~~------~~~~e~~~i~~ag~~g-- 477 (790)
T PRK09200 411 DEKYKAVIEEVKERH-ETGRPVLIGTGSIEQSETFSKLLDE----AGIPHNLLNAK------NAAKEAQIIAEAGQKG-- 477 (790)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH----CCCCEEEecCC------ccHHHHHHHHHcCCCC--
Confidence 578888988886542 2346899999999999999999998 47899999998 6777777777777776
Q ss_pred eEEEEccccccccCC---CCcc-----EEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEecc
Q 000379 476 NLLFATDVIEEGMHV---PNCS-----YVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERG 529 (1604)
Q Consensus 476 ~iLIaT~vleeGIDi---p~~n-----lVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~ 529 (1604)
+|+|||+++++|+|| |++. +||+||+|.+.+.|+||+||+||.|.. .+.|+...
T Consensus 478 ~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 478 AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 799999999999999 6898 999999999999999999999999964 55555543
No 91
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.91 E-value=7.9e-23 Score=253.76 Aligned_cols=420 Identities=17% Similarity=0.189 Sum_probs=253.0
Q ss_pred CCCCCCCCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHH
Q 000379 36 SSSTNSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY 110 (1604)
Q Consensus 36 ~~~~~~~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~ 110 (1604)
.++.+....++|+||.+.+.+++ ++|+|++.++|.|||+..+..+.++.....-.+ -.|++||... +..|.
T Consensus 361 ~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~g---pflvvvplst-~~~W~ 436 (1373)
T KOG0384|consen 361 KQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHG---PFLVVVPLST-ITAWE 436 (1373)
T ss_pred cCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccC---CeEEEeehhh-hHHHH
Confidence 45556666899999999998875 599999999999999999998888876333222 2799999844 56699
Q ss_pred HHHHhhcCCcEEEEECCCCCCccchh-HHHHhc----CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-C
Q 000379 111 DVIRVHTDFEVEEYYGAKGVDEWDSQ-CWQKEI----NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-H 184 (1604)
Q Consensus 111 ~~i~~~~~~~v~~~~G~~~~~~~~~~-~w~~~~----~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~ 184 (1604)
.+|..+++.++++|+|+.....-..+ .|...- -..+++++|+++++..- .++.--.|..+++||||++.+. .
T Consensus 437 ~ef~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~w~~~~vDeahrLkN~~~ 514 (1373)
T KOG0384|consen 437 REFETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIPWRYLLVDEAHRLKNDES 514 (1373)
T ss_pred HHHHHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhccCCcceeeecHHhhcCchHH
Confidence 99999999999999998643321111 122111 15799999999986543 3444456889999999999854 2
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeecc---chhhhhhccCCcceeeeecc
Q 000379 185 PYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE---DKTEMEVFVPSAKESCRFYD 261 (1604)
Q Consensus 185 ~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~---~~~~l~~~~~~p~e~~~~y~ 261 (1604)
.....+..| ..-+.|++|+||.+|+ +.+|.++++- .-|. ..+++..-...-+
T Consensus 515 ~l~~~l~~f-----~~~~rllitgTPlQNs-----------ikEL~sLl~F--l~P~kf~~~~~f~~~~~~~~------- 569 (1373)
T KOG0384|consen 515 KLYESLNQF-----KMNHRLLITGTPLQNS-----------LKELWSLLHF--LMPGKFDSWDEFLEEFDEET------- 569 (1373)
T ss_pred HHHHHHHHh-----cccceeeecCCCcccc-----------HHHHHHHhcc--cCCCCCCcHHHHHHhhcchh-------
Confidence 222224444 4568899999999875 7788877652 1111 0111100000000
Q ss_pred CCCccccchhhhhhhhhhhhchhHH-HHHHhHhhhhhhhhhHH--------HHHHHH-----HHHHHHHHHHHHHHhhhH
Q 000379 262 QSKFCGSDLKGKLEVSWSKFDASLS-KLQGSQLNCYKDMDDKH--------KTLRKQ-----LSDYHAKILYCLDELGLI 327 (1604)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~--------~~~~~~-----l~~~~~~~~~~~~~lG~~ 327 (1604)
...+..+...+.+.+. ++...... .++.+. ..++++ |.+.+..+. -|.-
T Consensus 570 ---------e~~~~~L~~~L~P~~lRr~kkdvek---slp~k~E~IlrVels~lQk~yYk~ILtkN~~~Lt-----KG~~ 632 (1373)
T KOG0384|consen 570 ---------EEQVRKLQQILKPFLLRRLKKDVEK---SLPPKEETILRVELSDLQKQYYKAILTKNFSALT-----KGAK 632 (1373)
T ss_pred ---------HHHHHHHHHHhhHHHHHHHHhhhcc---CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHh-----ccCC
Confidence 0001111111111111 11111100 011110 011111 111111000 0000
Q ss_pred HH-HHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHH-----HHHhhhcCccchhhccccCCcccccccCCCCHHHHH
Q 000379 328 CA-YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL-----HVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHE 401 (1604)
Q Consensus 328 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~ 401 (1604)
.. .....+. -++.+.-...-.... ....++.... ..+... -..|.|+-.
T Consensus 633 g~~~~lLNim-mELkKccNHpyLi~g---aee~~~~~~~~~~~d~~L~~l---------------------I~sSGKlVL 687 (1373)
T KOG0384|consen 633 GSTPSLLNIM-MELKKCCNHPYLIKG---AEEKILGDFRDKMRDEALQAL---------------------IQSSGKLVL 687 (1373)
T ss_pred CCCchHHHHH-HHHHHhcCCccccCc---HHHHHHHhhhhcchHHHHHHH---------------------HHhcCcEEe
Confidence 00 0000000 000000000000000 0000000000 000000 012567777
Q ss_pred HHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC---CceEE
Q 000379 402 LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG---KVNLL 478 (1604)
Q Consensus 402 L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g---~~~iL 478 (1604)
|-++|.... ..+.|+|||.+-+.+.+.|.++|.. .++....+.|. +...-|+..|+.|..- .+-+|
T Consensus 688 LDKLL~rLk-~~GHrVLIFSQMVRmLDIL~eYL~~----r~ypfQRLDGs------vrgelRq~AIDhFnap~SddFvFL 756 (1373)
T KOG0384|consen 688 LDKLLPRLK-EGGHRVLIFSQMVRMLDILAEYLSL----RGYPFQRLDGS------VRGELRQQAIDHFNAPDSDDFVFL 756 (1373)
T ss_pred HHHHHHHHh-cCCceEEEhHHHHHHHHHHHHHHHH----cCCcceeccCC------cchHHHHHHHHhccCCCCCceEEE
Confidence 777777665 4568999999999999999999986 68889999998 7899999999999864 57789
Q ss_pred EEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHHHHHHHHH
Q 000379 479 FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQRNKLFDI 540 (1604)
Q Consensus 479 IaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~~~~l~~~ 540 (1604)
+||.+++-|||+..++.||.||..||+..-.|...||+|.|++ +|-|++.+..+ .+.+++.
T Consensus 757 LSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvE-eEilERA 821 (1373)
T KOG0384|consen 757 LSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVE-EEILERA 821 (1373)
T ss_pred EecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchH-HHHHHHH
Confidence 9999999999999999999999999999999999999999986 67777776554 3444443
No 92
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.90 E-value=1.1e-22 Score=263.74 Aligned_cols=329 Identities=18% Similarity=0.196 Sum_probs=221.6
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--- 117 (1604)
....++.||.++++.+. ++|+||+.+||||||.+++++|.+.+. ..+..++|+|-||++|++.|.+.++++.
T Consensus 67 g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l----~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~ 142 (851)
T COG1205 67 GIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLL----RDPSARALLLYPTNALANDQAERLRELISDL 142 (851)
T ss_pred ccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHh----hCcCccEEEEechhhhHhhHHHHHHHHHHhC
Confidence 34459999999999997 589999999999999999999988765 3345579999999999999999999864
Q ss_pred C--CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc----CcCccceeEEEEeCcccccCC--ChHHHH
Q 000379 118 D--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA----FLSLDIVCFIVIDECHHATGN--HPYTKI 189 (1604)
Q Consensus 118 ~--~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~----~~~l~~i~llI~DEaH~~~~~--~~~~~i 189 (1604)
+ +.+..|.|+..... . .....+.++|+++||++|-..+... .+.++++.+||+||+|-..+- ...+.+
T Consensus 143 ~~~v~~~~y~Gdt~~~~--r--~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~l 218 (851)
T COG1205 143 PGKVTFGRYTGDTPPEE--R--RAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALL 218 (851)
T ss_pred CCcceeeeecCCCChHH--H--HHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHH
Confidence 3 77888888765332 1 1223468999999999997644332 345677999999999999865 344555
Q ss_pred HHHHHhh---cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceee-ccchhhhhhccCCcceeeeeccCCCc
Q 000379 190 MKEFYHK---SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFT-IEDKTEMEVFVPSAKESCRFYDQSKF 265 (1604)
Q Consensus 190 m~~~~~~---~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t-~~~~~~l~~~~~~p~e~~~~y~~~~~ 265 (1604)
++.+... ....|+++++|||....+ +...++ .+..... +. ....+......+.+.+...
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~---------e~~~~l---~~~~f~~~v~-----~~g~~~~~~~~~~~~p~~~ 281 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPG---------EFAEEL---FGRDFEVPVD-----EDGSPRGLRYFVRREPPIR 281 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChH---------HHHHHh---cCCcceeecc-----CCCCCCCceEEEEeCCcch
Confidence 5555433 346799999999965432 222222 2221111 11 0111111112222211110
Q ss_pred cccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH
Q 000379 266 CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQE 345 (1604)
Q Consensus 266 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~ 345 (1604)
.. ... +
T Consensus 282 ~~-------------------------------------------~~~--------------------------~----- 287 (851)
T COG1205 282 EL-------------------------------------------AES--------------------------I----- 287 (851)
T ss_pred hh-------------------------------------------hhh--------------------------c-----
Confidence 00 000 0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHH
Q 000379 346 ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII 425 (1604)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ 425 (1604)
..++...+..+....- ..+.++|+|+.++.
T Consensus 288 -------------------------------------------------r~s~~~~~~~~~~~~~-~~~~~tL~F~~sr~ 317 (851)
T COG1205 288 -------------------------------------------------RRSALAELATLAALLV-RNGIQTLVFFRSRK 317 (851)
T ss_pred -------------------------------------------------ccchHHHHHHHHHHHH-HcCceEEEEEehhh
Confidence 0000111111111110 23568999999999
Q ss_pred HHHHHHH----HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCC
Q 000379 426 AAKVVER----FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501 (1604)
Q Consensus 426 ta~~L~~----~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~ 501 (1604)
.++.++. .+......-...+...+|. |...+|..+...|++|++.++++|+.+|-||||.+++.||.+..
T Consensus 318 ~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~------~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~ 391 (851)
T COG1205 318 QVELLYLSPRRRLVREGGKLLDAVSTYRAG------LHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGY 391 (851)
T ss_pred hhhhhhhchhHHHhhcchhhhhheeecccc------CCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCC
Confidence 9998863 3332210001234444444 89999999999999999999999999999999999999999999
Q ss_pred CC-CHHHHHHHhhhhcccCceEEEE
Q 000379 502 PK-TVSSYIQSRGRARQHNSQFILM 525 (1604)
Q Consensus 502 p~-s~~syiQr~GRA~R~gs~~i~~ 525 (1604)
|. +..++.||.|||||.++....+
T Consensus 392 P~~s~~~~~Q~~GRaGR~~~~~l~~ 416 (851)
T COG1205 392 PGVSVLSFRQRAGRAGRRGQESLVL 416 (851)
T ss_pred CCchHHHHHHhhhhccCCCCCceEE
Confidence 99 9999999999999999653333
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=1.9e-22 Score=250.36 Aligned_cols=134 Identities=22% Similarity=0.288 Sum_probs=102.1
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHHhc
Q 000379 63 IAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEI 142 (1604)
Q Consensus 63 Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~~~ 142 (1604)
++.++||+|||.+++.++.+.+. .++.++||+|+++|+.|+++.+++.++.++..++|+.+... ..+.|....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~------~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~e-r~~~~~~~~ 73 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA------LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSE-KLQAWRKVK 73 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHH-HHHHHHHHH
Confidence 47899999999999888877765 35579999999999999999999999999999999875443 345677665
Q ss_pred C-CCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC---ChH--HHHHHHHHhhcCCCCcEEEEeccCC
Q 000379 143 N-KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN---HPY--TKIMKEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 143 ~-~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~---~~~--~~im~~~~~~~~~~p~iLgLTATP~ 211 (1604)
. ..+|||+|+..+ +..+.++++||+||+|+..-. .|+ .+-+..+. ......+++++||||.
T Consensus 74 ~g~~~IVVGTrsal-------f~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r-a~~~~~~vil~SATPs 140 (505)
T TIGR00595 74 NGEILVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR-AKKFNCPVVLGSATPS 140 (505)
T ss_pred cCCCCEEECChHHH-------cCcccCCCEEEEECCCccccccccCCCCcHHHHHHHH-HHhcCCCEEEEeCCCC
Confidence 4 579999999876 356789999999999998622 222 11122221 2234577899999986
No 94
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2.7e-22 Score=248.12 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...|.+.+..... ....+||||+++..++.|.+.|.. .++.+..+||. +. +++..+..|+.+..
T Consensus 456 ~~K~~aL~~~i~~~~~-~~~pvLIft~t~~~se~L~~~L~~----~gi~~~~Lhg~------~~--~rE~~ii~~ag~~g 522 (656)
T PRK12898 456 AAKWAAVAARVRELHA-QGRPVLVGTRSVAASERLSALLRE----AGLPHQVLNAK------QD--AEEAAIVARAGQRG 522 (656)
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHH----CCCCEEEeeCC------cH--HHHHHHHHHcCCCC
Confidence 4688899998876532 234699999999999999999998 47899999997 44 45556666776667
Q ss_pred eEEEEccccccccCCC---Ccc-----EEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEecc
Q 000379 476 NLLFATDVIEEGMHVP---NCS-----YVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERG 529 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip---~~n-----lVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~ 529 (1604)
+|+|||+++++|+||+ ++. +||+||.|.+.+.|+||+||+||.|.. ++.|+...
T Consensus 523 ~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 523 RITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred cEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechh
Confidence 8999999999999999 666 999999999999999999999999964 55666543
No 95
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.90 E-value=3.4e-21 Score=238.08 Aligned_cols=410 Identities=19% Similarity=0.232 Sum_probs=241.5
Q ss_pred CCCCCcHHHHHHHHHhh----c-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCC-----eEEEEEecChhh
Q 000379 42 INFIPRIYQLKVFEVAK----R-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK-----KLIIFLAPTVHL 105 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l----~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~-----~~vl~LvPt~~L 105 (1604)
....+||||+|+++.+- + ..+|++..+|+|||+..+.+|+.++. ..+. .+.+||+|. .|
T Consensus 235 l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLr----q~P~~~~~~~k~lVV~P~-sL 309 (776)
T KOG0390|consen 235 LKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLR----QFPQAKPLINKPLVVAPS-SL 309 (776)
T ss_pred HhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHH----hCcCccccccccEEEccH-HH
Confidence 34578999999998762 1 45899999999999999999998886 3444 678999997 99
Q ss_pred HHHHHHHHHhhcC---CcEEEEECCCCCCccch-hHHHHhc---CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcc
Q 000379 106 VHQQYDVIRVHTD---FEVEEYYGAKGVDEWDS-QCWQKEI---NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECH 178 (1604)
Q Consensus 106 v~Q~~~~i~~~~~---~~v~~~~G~~~~~~~~~-~~w~~~~---~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH 178 (1604)
+..|+++|.++.+ +....++|..+. .|.. ..|.... -..-|++.+++.+.+... .+.+..+++||+||.|
T Consensus 310 v~nWkkEF~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGH 386 (776)
T KOG0390|consen 310 VNNWKKEFGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGH 386 (776)
T ss_pred HHHHHHHHHHhccccccceeeeecccch-hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCC
Confidence 9999999999875 455556665443 2322 2233221 235788999999976554 3556789999999999
Q ss_pred cccCCChHHHHHHHHHhhcCCCCcEEEEeccCCCCCC--------CCCc-----------------------------cc
Q 000379 179 HATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKG--------VSSA-----------------------------MD 221 (1604)
Q Consensus 179 ~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~--------~~~~-----------------------------~~ 221 (1604)
+..+. -..+.+.+ ..-..||++.||+||++|+- ...+ ..
T Consensus 387 rlkN~--~s~~~kaL--~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~ 462 (776)
T KOG0390|consen 387 RLKNS--DSLTLKAL--SSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRE 462 (776)
T ss_pred Cccch--hhHHHHHH--HhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhh
Confidence 99764 22222221 11267999999999999860 0000 00
Q ss_pred HHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhh
Q 000379 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDD 301 (1604)
Q Consensus 222 ~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 301 (1604)
.++.+.+|-++.+.-+...+. +.+..|.|.-.+.++...+... + ...|..+..
T Consensus 463 ~~~rl~eL~~~t~~fi~rrt~-~il~k~LP~k~e~vv~~n~t~~-----------------------Q---~~~~~~l~~ 515 (776)
T KOG0390|consen 463 REERLQELRELTNKFILRRTG-DILLKYLPGKYEYVVFCNPTPI-----------------------Q---KELYKKLLD 515 (776)
T ss_pred hHHHHHHHHHHHHhheeeccc-chhhhhCCCceeEEEEeCCcHH-----------------------H---HHHHHHHHH
Confidence 011122222222211111111 2333344433333333332221 0 000100000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhcc
Q 000379 302 KHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLD 381 (1604)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 381 (1604)
.. ....+... .......|-..|....... +.........+..... ...
T Consensus 516 ~~--~~~~~~~~---~l~~~~~L~k~cnhP~L~~--------------~~~~~~~e~~~~~~~~-------------~~~ 563 (776)
T KOG0390|consen 516 SM--KMRTLKGY---ALELITKLKKLCNHPSLLL--------------LCEKTEKEKAFKNPAL-------------LLD 563 (776)
T ss_pred HH--Hhhhhhcc---hhhHHHHHHHHhcCHHhhc--------------ccccccccccccChHh-------------hhc
Confidence 00 00000000 0000000000000000000 0000000000000000 000
Q ss_pred ccCCcccc-cccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCH
Q 000379 382 FGFDYSKA-VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTP 460 (1604)
Q Consensus 382 ~~~~~~~~-~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~ 460 (1604)
. ...+. ......+.|+..|+.++...+.....++.+-.+.+.+.+.+..+++. .|+.+..++|+ |+.
T Consensus 564 ~--~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~----~g~~~~rLdG~------~~~ 631 (776)
T KOG0390|consen 564 P--GKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW----RGYEVLRLDGK------TSI 631 (776)
T ss_pred c--cccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh----cCceEEEEcCC------Cch
Confidence 0 00000 11223478999999998666555555666667777777777777765 58899999999 899
Q ss_pred HHHHHHHHHHhCCC---ceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHH
Q 000379 461 KVQKEVLESFRGGK---VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQ 533 (1604)
Q Consensus 461 ~~r~~vl~~Fr~g~---~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~ 533 (1604)
++|+.+++.|.+.. .-+|.+|.+.++||++-+++-||.||+.||+..-.|.++||.|.||+ .|.|+..|..++
T Consensus 632 ~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEE 711 (776)
T KOG0390|consen 632 KQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEE 711 (776)
T ss_pred HHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchH
Confidence 99999999998754 33567899999999999999999999999999999999999999997 455667787764
Q ss_pred H
Q 000379 534 R 534 (1604)
Q Consensus 534 ~ 534 (1604)
.
T Consensus 712 k 712 (776)
T KOG0390|consen 712 K 712 (776)
T ss_pred H
Confidence 3
No 96
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.90 E-value=1.8e-22 Score=250.48 Aligned_cols=121 Identities=13% Similarity=0.141 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...+++.+.... ..+..+||||+++..++.|.+.|.+ .++....+||. +.+|+..+.+|+.+..
T Consensus 388 ~~k~~ai~~~i~~~~-~~grpvLV~t~si~~se~ls~~L~~----~gi~~~~Lna~--------q~~rEa~ii~~ag~~g 454 (745)
T TIGR00963 388 EEKWKAVVDEIKERH-AKGQPVLVGTTSVEKSELLSNLLKE----RGIPHNVLNAK--------NHEREAEIIAQAGRKG 454 (745)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH----cCCCeEEeeCC--------hHHHHHHHHHhcCCCc
Confidence 467777777664443 3456899999999999999999998 47888899986 6688999999999999
Q ss_pred eEEEEccccccccCCCC-------ccEEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEecc
Q 000379 476 NLLFATDVIEEGMHVPN-------CSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERG 529 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~-------~nlVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~ 529 (1604)
+|+|||+++++|+||+. ..+||+++.|.|.+.|.|++||+||.|.. ...|+...
T Consensus 455 ~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 455 AVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred eEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEecc
Confidence 99999999999999998 55999999999999999999999999964 55555543
No 97
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.89 E-value=5.5e-22 Score=265.27 Aligned_cols=131 Identities=19% Similarity=0.158 Sum_probs=97.9
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--- 117 (1604)
....|+++|..++..++ ++++++++|||+|||..++.++..+.. .+++++||+||++|+.|+++.++.+.
T Consensus 75 ~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~------~g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAK------KGKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred cCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 45689999999999887 589999999999999855444333322 24679999999999999999999865
Q ss_pred CCcE---EEEECCCCCCccchhHHHHhcC-CCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccC
Q 000379 118 DFEV---EEYYGAKGVDEWDSQCWQKEIN-KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1604)
Q Consensus 118 ~~~v---~~~~G~~~~~~~~~~~w~~~~~-~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~ 182 (1604)
++.+ ..++|+.+... ....|..... +++|+|+||+.|.+.+..- .. +++++|+||||++.+
T Consensus 149 ~i~~~~i~~~~Gg~~~~e-~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKE-KKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred CCceeeeeeecCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhhhh
Confidence 4443 34678765432 1223433333 5899999999998876642 22 899999999999976
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.88 E-value=3.2e-21 Score=244.23 Aligned_cols=307 Identities=21% Similarity=0.289 Sum_probs=213.2
Q ss_pred CCCCCCCcHHHHHHHHHhhc-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH
Q 000379 40 NSINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
....|+-++-|..+++.+++ .+=+||++.|-|||-+|+-.+..... .++.|.|||||--|++|.++.
T Consensus 589 ~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~------~GKQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 589 ASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM------DGKQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred hcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc------CCCeEEEEcccHHhHHHHHHH
Confidence 34578889999999999874 67899999999999999987665443 557799999999999999999
Q ss_pred HHhhc---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHH
Q 000379 113 IRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189 (1604)
Q Consensus 113 i~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i 189 (1604)
|+..+ +++|..+.--.+......-.-.-.-+..||||+|...| +..+.+.++.|||+||-||..-.|
T Consensus 663 FkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqRFGVk~----- 732 (1139)
T COG1197 663 FKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQRFGVKH----- 732 (1139)
T ss_pred HHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhhcCccH-----
Confidence 99754 45555554333222211111122235789999998766 566889999999999999996543
Q ss_pred HHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeecc-chhhhhhccCCcceeeeeccCCCcccc
Q 000379 190 MKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCGS 268 (1604)
Q Consensus 190 m~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~-~~~~l~~~~~~p~e~~~~y~~~~~~~~ 268 (1604)
++.+........+|-|||||+... +.-.+..+-.+ |.+.||. +|-.+..|+.
T Consensus 733 -KEkLK~Lr~~VDvLTLSATPIPRT-------L~Msm~GiRdl--SvI~TPP~~R~pV~T~V~----------------- 785 (1139)
T COG1197 733 -KEKLKELRANVDVLTLSATPIPRT-------LNMSLSGIRDL--SVIATPPEDRLPVKTFVS----------------- 785 (1139)
T ss_pred -HHHHHHHhccCcEEEeeCCCCcch-------HHHHHhcchhh--hhccCCCCCCcceEEEEe-----------------
Confidence 333344456789999999999642 11111100000 0111221 1111111000
Q ss_pred chhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Q 000379 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348 (1604)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 348 (1604)
.+
T Consensus 786 -----------~~------------------------------------------------------------------- 787 (1139)
T COG1197 786 -----------EY------------------------------------------------------------------- 787 (1139)
T ss_pred -----------cC-------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHH-HHHhhCCCCCcEEEEEEchHHHH
Q 000379 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAA 427 (1604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~-lL~~~~~~~~~~~IIFv~~r~ta 427 (1604)
++. .+.+ ++.+. ..++++..-+|++.+.
T Consensus 788 -----------------------------------------------d~~--~ireAI~REl--~RgGQvfYv~NrV~~I 816 (1139)
T COG1197 788 -----------------------------------------------DDL--LIREAILREL--LRGGQVFYVHNRVESI 816 (1139)
T ss_pred -----------------------------------------------ChH--HHHHHHHHHH--hcCCEEEEEecchhhH
Confidence 000 0000 11111 2345777778888998
Q ss_pred HHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCC-CHH
Q 000379 428 KVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK-TVS 506 (1604)
Q Consensus 428 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~-s~~ 506 (1604)
..+...|+.+ .+..++.+.||. |+.++-++++.+|-+|+.+|||||.+.|.|||||++|.+|.-+... -+.
T Consensus 817 e~~~~~L~~L--VPEarI~vaHGQ------M~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLs 888 (1139)
T COG1197 817 EKKAERLREL--VPEARIAVAHGQ------MRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLA 888 (1139)
T ss_pred HHHHHHHHHh--CCceEEEEeecC------CCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHH
Confidence 8888888875 356789999999 9999999999999999999999999999999999999998766543 688
Q ss_pred HHHHHhhhhcccCce-EEEEE
Q 000379 507 SYIQSRGRARQHNSQ-FILML 526 (1604)
Q Consensus 507 syiQr~GRA~R~gs~-~i~~v 526 (1604)
+..|-|||+||.+.+ |..|+
T Consensus 889 QLyQLRGRVGRS~~~AYAYfl 909 (1139)
T COG1197 889 QLYQLRGRVGRSNKQAYAYFL 909 (1139)
T ss_pred HHHHhccccCCccceEEEEEe
Confidence 999999999999876 33333
No 99
>PRK09694 helicase Cas3; Provisional
Probab=99.88 E-value=6.1e-21 Score=246.01 Aligned_cols=338 Identities=19% Similarity=0.237 Sum_probs=197.1
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh----c
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH----T 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~----~ 117 (1604)
.+.|||+|..+.+... .+.+||.+|||+|||.+|++++..++. .+...+++|..||.++++|.+++++++ +
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~----~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLID----QGLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHH----hCCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 6789999998865444 366899999999999999988776554 333456999999999999999998752 2
Q ss_pred -CCcEEEEECCCCCCc------------------cc-hhHHHHhc----CCCcEEEEcHHHHH-HHHHhcCcCccce---
Q 000379 118 -DFEVEEYYGAKGVDE------------------WD-SQCWQKEI----NKNDVLVMTPQILL-DALRKAFLSLDIV--- 169 (1604)
Q Consensus 118 -~~~v~~~~G~~~~~~------------------~~-~~~w~~~~----~~~~ViV~T~q~Ll-~~l~~~~~~l~~i--- 169 (1604)
...+...||....+. |. ...|-... --.+|+|+|...++ ..+......+..+
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 356777777643210 00 01343311 13699999996665 3343322222223
Q ss_pred -eEEEEeCcccccCCChHHHHHHHHHhh-cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhh
Q 000379 170 -CFIVIDECHHATGNHPYTKIMKEFYHK-SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEME 247 (1604)
Q Consensus 170 -~llI~DEaH~~~~~~~~~~im~~~~~~-~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~ 247 (1604)
++|||||+|-+-. -+..++...+.. .....+++.||||+... ....|-..++... ..
T Consensus 440 ~svvIiDEVHAyD~--ym~~lL~~~L~~l~~~g~~vIllSATLP~~-----------~r~~L~~a~~~~~-------~~- 498 (878)
T PRK09694 440 RSVLIVDEVHAYDA--YMYGLLEAVLKAQAQAGGSVILLSATLPAT-----------LKQKLLDTYGGHD-------PV- 498 (878)
T ss_pred cCeEEEechhhCCH--HHHHHHHHHHHHHHhcCCcEEEEeCCCCHH-----------HHHHHHHHhcccc-------cc-
Confidence 4899999999821 223344433322 23346799999997521 1222222221100 00
Q ss_pred hccCCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 000379 248 VFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLI 327 (1604)
Q Consensus 248 ~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~ 327 (1604)
.....|....... ... ...+. ..
T Consensus 499 -------~~~~~YPlvt~~~-----~~~--~~~~~----------------~~--------------------------- 521 (878)
T PRK09694 499 -------ELSSAYPLITWRG-----VNG--AQRFD----------------LS--------------------------- 521 (878)
T ss_pred -------ccccccccccccc-----ccc--ceeee----------------cc---------------------------
Confidence 0000010000000 000 00000 00
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHH
Q 000379 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFL 407 (1604)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~ 407 (1604)
. . ...... .. .+.. .........+....+..+++
T Consensus 522 -----------------------------------~---~-~~~~~~-~~-~v~v-----~~~~~~~~~~~~~~l~~i~~ 555 (878)
T PRK09694 522 -----------------------------------A---H-PEQLPA-RF-TIQL-----EPICLADMLPDLTLLQRMIA 555 (878)
T ss_pred -----------------------------------c---c-ccccCc-ce-EEEE-----EeeccccccCHHHHHHHHHH
Confidence 0 0 000000 00 0000 00000000111112222222
Q ss_pred hhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHH----HHHHHHH-hCCC---ceEEE
Q 000379 408 SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQ----KEVLESF-RGGK---VNLLF 479 (1604)
Q Consensus 408 ~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r----~~vl~~F-r~g~---~~iLI 479 (1604)
.. ..+.+++||||++..|..+++.|++... ....+..+||. +...+| +++++.| ++|+ ..|||
T Consensus 556 ~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~-~~~~v~llHsr------f~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 556 AA--NAGAQVCLICNLVDDAQKLYQRLKELNN-TQVDIDLFHAR------FTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HH--hcCCEEEEEECCHHHHHHHHHHHHhhCC-CCceEEEEeCC------CCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 22 2345899999999999999999986411 23578999998 777777 4678889 7776 47999
Q ss_pred EccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCc
Q 000379 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520 (1604)
Q Consensus 480 aT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs 520 (1604)
||+|+|.|||| +++++|....| ..+++||.||++|.+.
T Consensus 627 aTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 627 ATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred ECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999999999 58999998777 6799999999999874
No 100
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.88 E-value=3.8e-21 Score=251.69 Aligned_cols=314 Identities=20% Similarity=0.224 Sum_probs=192.5
Q ss_pred CCCCcHHHHHHHHHhhccC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC----hhhHHHHHHHHHhhc
Q 000379 43 NFIPRIYQLKVFEVAKRRN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT----VHLVHQQYDVIRVHT 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt----~~Lv~Q~~~~i~~~~ 117 (1604)
.+.-..+-.++++.+.++. +||+++||||||...-.++.+. ..+....+++.-|. ++|+.|.++++...+
T Consensus 72 ~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~-----g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 72 NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLEL-----GRGVKGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHc-----CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 3444667777888777644 6788999999999533222221 12223345666674 577777777776544
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccc-ccCCChHHHHHHHHHhh
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH-ATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~-~~~~~~~~~im~~~~~~ 196 (1604)
|-.|+.-. ..+ +..-.+++|+|||+++|++.+..+.. ++++++||+||||. ..+..-.-..++.....
T Consensus 147 G~~VGY~v---rf~-------~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~ 215 (1294)
T PRK11131 147 GGCVGYKV---RFN-------DQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR 215 (1294)
T ss_pred cceeceee---cCc-------cccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc
Confidence 44332211 111 11123689999999999999887644 89999999999995 44432222233433221
Q ss_pred cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhc-CCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTL-DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l-~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
.+..++++||||... ..+.+.+ ++.++.+..+. .|. ...|.+...
T Consensus 216 -rpdlKvILmSATid~--------------e~fs~~F~~apvI~V~Gr~-------~pV--ei~y~p~~~---------- 261 (1294)
T PRK11131 216 -RPDLKVIITSATIDP--------------ERFSRHFNNAPIIEVSGRT-------YPV--EVRYRPIVE---------- 261 (1294)
T ss_pred -CCCceEEEeeCCCCH--------------HHHHHHcCCCCEEEEcCcc-------ccc--eEEEeeccc----------
Confidence 134689999999631 1223322 22222221110 011 111110000
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
... .
T Consensus 262 ------------------------~~~--~-------------------------------------------------- 265 (1294)
T PRK11131 262 ------------------------EAD--D-------------------------------------------------- 265 (1294)
T ss_pred ------------------------ccc--h--------------------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
.. ...+..+++.+..........+|||++++..++.+.+.|.
T Consensus 266 ~~--------------------------------------~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~ 307 (1294)
T PRK11131 266 TE--------------------------------------RDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALN 307 (1294)
T ss_pred hh--------------------------------------HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHH
Confidence 00 0011111111111111234579999999999999999998
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcC---------------
Q 000379 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD--------------- 500 (1604)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD--------------- 500 (1604)
.. .+....+..+||. |++.+|..+++. .|..+|||||+++|.|||||++++||+++
T Consensus 308 ~~-~~~~~~VlpLhg~------Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~ 378 (1294)
T PRK11131 308 KL-NLRHTEILPLYAR------LSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQR 378 (1294)
T ss_pred hc-CCCcceEeecccC------CCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCccc
Confidence 74 2334557788998 899999999986 57899999999999999999999999986
Q ss_pred CC---CCHHHHHHHhhhhcccCc-eEEEEEecc
Q 000379 501 LP---KTVSSYIQSRGRARQHNS-QFILMLERG 529 (1604)
Q Consensus 501 ~p---~s~~syiQr~GRA~R~gs-~~i~~v~~~ 529 (1604)
+| -|..+|+||+|||||.+. .+|.++++.
T Consensus 379 Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~ 411 (1294)
T PRK11131 379 LPIEPISQASANQRKGRCGRVSEGICIRLYSED 411 (1294)
T ss_pred CCeeecCHhhHhhhccccCCCCCcEEEEeCCHH
Confidence 33 355789999999999864 466776643
No 101
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.87 E-value=4.8e-21 Score=232.40 Aligned_cols=344 Identities=17% Similarity=0.196 Sum_probs=212.3
Q ss_pred CCCCCcHHHHHHHHHhhc------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 42 INFIPRIYQLKVFEVAKR------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
....||.||..|+.+..+ +.++++|.||+|||.+|+.+|..++. .+..++||||+.+++|++|.+..+.+
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r----~~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK----SGWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh----cchhheeeEEechHHHHHHHHHHHHH
Confidence 567899999999987642 55999999999999999999988876 56678899999999999999999999
Q ss_pred hcCC--cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc-----CcCccceeEEEEeCcccccCCChHHH
Q 000379 116 HTDF--EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-----FLSLDIVCFIVIDECHHATGNHPYTK 188 (1604)
Q Consensus 116 ~~~~--~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~-----~~~l~~i~llI~DEaH~~~~~~~~~~ 188 (1604)
+.+. .+..+.+. ..+. .++|.|+|+|.+...+.+. .+....++|||+||||+-.-. -|..
T Consensus 238 ~~P~~~~~n~i~~~-~~~~-----------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~-~~~~ 304 (875)
T COG4096 238 FLPFGTKMNKIEDK-KGDT-----------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS-EWSS 304 (875)
T ss_pred hCCCccceeeeecc-cCCc-----------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh-hhHH
Confidence 8853 33333332 2221 5799999999999888765 344556999999999998643 5667
Q ss_pred HHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhc-CCceeeccchhhhhhccCCc-ceeee--eccCCC
Q 000379 189 IMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTL-DSQVFTIEDKTEMEVFVPSA-KESCR--FYDQSK 264 (1604)
Q Consensus 189 im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l-~~~i~t~~~~~~l~~~~~~p-~e~~~--~y~~~~ 264 (1604)
|+..|- ..++||||||-......+ -..+ +..++..+..+.+...+--| ....+ ..+..-
T Consensus 305 I~dYFd------A~~~gLTATP~~~~d~~T-----------~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G 367 (875)
T COG4096 305 ILDYFD------AATQGLTATPKETIDRST-----------YGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDG 367 (875)
T ss_pred HHHHHH------HHHHhhccCccccccccc-----------ccccCCCcceeecHHHHhhccccCCCCceEEeeeccccC
Confidence 777652 345677999975321111 1122 44455555555444322222 11111 111110
Q ss_pred ccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH
Q 000379 265 FCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQ 344 (1604)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~ 344 (1604)
.....+.+.....+... |-
T Consensus 368 ~~~~~~serek~~g~~i---------------------------------------------~~---------------- 386 (875)
T COG4096 368 WKPDAGSEREKLQGEAI---------------------------------------------DE---------------- 386 (875)
T ss_pred cCcCccchhhhhhcccc---------------------------------------------Cc----------------
Confidence 00000000000000000 00
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhC-CCCCcEEEEEEch
Q 000379 345 EECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFG-KSTQVLCIIFVER 423 (1604)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~-~~~~~~~IIFv~~ 423 (1604)
+..... ...++.... .......-...+-+.+.... ...-.|+||||.+
T Consensus 387 ------------------------dd~~~~------~~d~dr~~v-~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n 435 (875)
T COG4096 387 ------------------------DDQNFE------ARDFDRTLV-IPFRTETVARELTEYLKRGATGDEIGKTIVFAKN 435 (875)
T ss_pred ------------------------cccccc------ccccchhcc-ccchHHHHHHHHHHHhccccCCCccCceEEEeeC
Confidence 000000 000000000 00000111223333333311 1224689999999
Q ss_pred HHHHHHHHHHHhhC-CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC--CceEEEEccccccccCCCCccEEEEcC
Q 000379 424 IIAAKVVERFVKKV-PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG--KVNLLFATDVIEEGMHVPNCSYVIRFD 500 (1604)
Q Consensus 424 r~ta~~L~~~L~~~-~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g--~~~iLIaT~vleeGIDip~~nlVI~fD 500 (1604)
..+|+.+...|... |...+--+..++|.. ... +..++.|... --+|.|+.+++..|||+|.|-++|.+-
T Consensus 436 ~dHAe~i~~~~~~~ype~~~~~a~~IT~d~-------~~~-q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r 507 (875)
T COG4096 436 HDHAERIREALVNEYPEYNGRYAMKITGDA-------EQA-QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDR 507 (875)
T ss_pred cHHHHHHHHHHHHhCccccCceEEEEeccc-------hhh-HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehh
Confidence 99999999988764 554444567788872 333 3445555543 367999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhhcccC
Q 000379 501 LPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 501 ~p~s~~syiQr~GRA~R~g 519 (1604)
.-.|...|.|++||+-|..
T Consensus 508 ~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 508 KVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred hhhhHHHHHHHhcCccccC
Confidence 9999999999999998864
No 102
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.87 E-value=1.2e-20 Score=248.23 Aligned_cols=316 Identities=19% Similarity=0.179 Sum_probs=202.4
Q ss_pred CCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEE
Q 000379 44 FIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVE 122 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~ 122 (1604)
+.-..+..++++.+.+ +.+||+++||||||...-.++.+. ..+...+|++.-|.+.-+...+..+.+.++..++
T Consensus 66 LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~-----~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG 140 (1283)
T TIGR01967 66 LPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL-----GRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLG 140 (1283)
T ss_pred CCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc-----CCCCCceEecCCccHHHHHHHHHHHHHHhCCCcc
Confidence 3445566677777765 556889999999999654443332 1233446788889988888888888888888887
Q ss_pred EEECC-CCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccc-ccCCChHHHHHHHHHhhcCCC
Q 000379 123 EYYGA-KGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH-ATGNHPYTKIMKEFYHKSDNK 200 (1604)
Q Consensus 123 ~~~G~-~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~-~~~~~~~~~im~~~~~~~~~~ 200 (1604)
..+|- ...+. ..-.+..|+|||+++|++.+.+.. .++++++|||||||. .....-.-..++...... +.
T Consensus 141 ~~VGY~vR~~~-------~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pd 211 (1283)
T TIGR01967 141 EKVGYKVRFHD-------QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PD 211 (1283)
T ss_pred eEEeeEEcCCc-------ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CC
Confidence 77773 22221 112367899999999999987754 478999999999995 444322222344443222 34
Q ss_pred CcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcC-CceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 201 PKVFGMTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 201 p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
.++++||||... ..+.+.++ +.+..+..+. -|. ...|.+....
T Consensus 212 LKlIlmSATld~--------------~~fa~~F~~apvI~V~Gr~-------~PV--ev~Y~~~~~~------------- 255 (1283)
T TIGR01967 212 LKIIITSATIDP--------------ERFSRHFNNAPIIEVSGRT-------YPV--EVRYRPLVEE------------- 255 (1283)
T ss_pred CeEEEEeCCcCH--------------HHHHHHhcCCCEEEECCCc-------ccc--eeEEeccccc-------------
Confidence 689999999631 23333332 2222221110 011 1111100000
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
....
T Consensus 256 ------------------~~~~---------------------------------------------------------- 259 (1283)
T TIGR01967 256 ------------------QEDD---------------------------------------------------------- 259 (1283)
T ss_pred ------------------ccch----------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCC
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~ 439 (1604)
...+...+.+.+..........+|||++++..++.+.+.|.+..
T Consensus 260 -----------------------------------~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~- 303 (1283)
T TIGR01967 260 -----------------------------------DLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRN- 303 (1283)
T ss_pred -----------------------------------hhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcC-
Confidence 00011111111111000123579999999999999999998642
Q ss_pred CCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCC----------------
Q 000379 440 LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK---------------- 503 (1604)
Q Consensus 440 ~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~---------------- 503 (1604)
..++.+..+||. |+.++|..+++.+ +..+|||||+++|.|||||++.+||+++.+.
T Consensus 304 ~~~~~VlpLhg~------Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~ 375 (1283)
T TIGR01967 304 LRHTEILPLYAR------LSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIE 375 (1283)
T ss_pred CCCcEEEeccCC------CCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCc
Confidence 235678889998 8999999986654 2469999999999999999999999998543
Q ss_pred --CHHHHHHHhhhhcccCce-EEEEEecc
Q 000379 504 --TVSSYIQSRGRARQHNSQ-FILMLERG 529 (1604)
Q Consensus 504 --s~~syiQr~GRA~R~gs~-~i~~v~~~ 529 (1604)
|..+|+||.|||||.+.. +|.++++.
T Consensus 376 ~ISkasa~QRaGRAGR~~~G~cyRLyte~ 404 (1283)
T TIGR01967 376 PISQASANQRKGRCGRVAPGICIRLYSEE 404 (1283)
T ss_pred cCCHHHHHHHhhhhCCCCCceEEEecCHH
Confidence 567999999999999854 66666643
No 103
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.87 E-value=6.3e-21 Score=211.76 Aligned_cols=110 Identities=17% Similarity=0.304 Sum_probs=95.2
Q ss_pred CcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCc
Q 000379 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493 (1604)
Q Consensus 414 ~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~ 493 (1604)
..++||||.+|..++.++-.|.. .|+....+|.. +...+|.++-+++-+|++.|++||...+.|+|-|++
T Consensus 255 ~GCGIVYCRTR~~cEq~AI~l~~----~Gi~A~AYHAG------LK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~V 324 (641)
T KOG0352|consen 255 TGCGIVYCRTRNECEQVAIMLEI----AGIPAMAYHAG------LKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDV 324 (641)
T ss_pred CcceEEEeccHHHHHHHHHHhhh----cCcchHHHhcc------cccchhHHHHHHHhcCCCCEEEEEeccccccCCcce
Confidence 35789999999999999888876 57777777766 789999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHhhhhcccCce-EEEE-EeccCHHH
Q 000379 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQ-FILM-LERGNLKQ 533 (1604)
Q Consensus 494 nlVI~fD~p~s~~syiQr~GRA~R~gs~-~i~~-v~~~~~~~ 533 (1604)
..||++|.|.|+..|.|-.|||||.|.. |.-+ +.+.+...
T Consensus 325 RFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 325 RFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred eEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 9999999999999999999999999965 3333 44554443
No 104
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.87 E-value=2e-21 Score=249.02 Aligned_cols=315 Identities=18% Similarity=0.250 Sum_probs=217.3
Q ss_pred CCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEE
Q 000379 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
.-|+-|.+++...+ ++++.|.||||.||.+++.+++.- -.+.+|+|.|.++|++.|...+ ...++....
T Consensus 264 ~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l---------~~gitvVISPL~SLm~DQv~~L-~~~~I~a~~ 333 (941)
T KOG0351|consen 264 GFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL---------LGGVTVVISPLISLMQDQVTHL-SKKGIPACF 333 (941)
T ss_pred cCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc---------cCCceEEeccHHHHHHHHHHhh-hhcCcceee
Confidence 46899999999777 699999999999999999887543 1237999999999999998888 467888888
Q ss_pred EECCCCCCccchhHHHHhcC---CCcEEEEcHHHHHHH--HHhcCcCccc---eeEEEEeCcccccCC-ChHHHHHHHHH
Q 000379 124 YYGAKGVDEWDSQCWQKEIN---KNDVLVMTPQILLDA--LRKAFLSLDI---VCFIVIDECHHATGN-HPYTKIMKEFY 194 (1604)
Q Consensus 124 ~~G~~~~~~~~~~~w~~~~~---~~~ViV~T~q~Ll~~--l~~~~~~l~~---i~llI~DEaH~~~~~-~~~~~im~~~~ 194 (1604)
+.++..... ....|+.... ..+|+..||+.+... +.+-...+.. +.++|+||||+...+ |.|+.-.+..-
T Consensus 334 L~s~q~~~~-~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~ 412 (941)
T KOG0351|consen 334 LSSIQTAAE-RLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLG 412 (941)
T ss_pred ccccccHHH-HHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHH
Confidence 888765443 2344555543 479999999988432 2222233344 899999999999865 55443333221
Q ss_pred --hhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhh
Q 000379 195 --HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1604)
Q Consensus 195 --~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~ 272 (1604)
....+...+|+||||-... + -.++-+.|+- ..|....-.++..
T Consensus 413 ~l~~~~~~vP~iALTATAT~~--------v---~~DIi~~L~l---------------~~~~~~~~sfnR~--------- 457 (941)
T KOG0351|consen 413 LLRIRFPGVPFIALTATATER--------V---REDVIRSLGL---------------RNPELFKSSFNRP--------- 457 (941)
T ss_pred HHHhhCCCCCeEEeehhccHH--------H---HHHHHHHhCC---------------CCcceecccCCCC---------
Confidence 1122336799999994211 0 0111111110 0000000000000
Q ss_pred hhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000379 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1604)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1604)
T Consensus 458 -------------------------------------------------------------------------------- 457 (941)
T KOG0351|consen 458 -------------------------------------------------------------------------------- 457 (941)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHH
Q 000379 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1604)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~ 432 (1604)
+..-++...........+...+..+ ..+..+||+|.+|.+++.+..
T Consensus 458 --------------------------------NL~yeV~~k~~~~~~~~~~~~~~~~--~~~~s~IIYC~sr~~ce~vs~ 503 (941)
T KOG0351|consen 458 --------------------------------NLKYEVSPKTDKDALLDILEESKLR--HPDQSGIIYCLSRKECEQVSA 503 (941)
T ss_pred --------------------------------CceEEEEeccCccchHHHHHHhhhc--CCCCCeEEEeCCcchHHHHHH
Confidence 0000000000011122223333333 345689999999999999999
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHh
Q 000379 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512 (1604)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~ 512 (1604)
.|.+. ++++..+|+. |+.++|..|.++|-.++++|+|||=+.+.|||-|++..||||.+|++...|.|-.
T Consensus 504 ~L~~~----~~~a~~YHAG------l~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~ 573 (941)
T KOG0351|consen 504 VLRSL----GKSAAFYHAG------LPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEA 573 (941)
T ss_pred HHHHh----chhhHhhhcC------CCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhc
Confidence 99984 5778888887 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCc--eEEEEEecc
Q 000379 513 GRARQHNS--QFILMLERG 529 (1604)
Q Consensus 513 GRA~R~gs--~~i~~v~~~ 529 (1604)
|||||.|. ..++|+...
T Consensus 574 GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 574 GRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred cccCcCCCcceeEEecchh
Confidence 99999995 466666654
No 105
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.86 E-value=1.3e-19 Score=233.41 Aligned_cols=154 Identities=15% Similarity=0.205 Sum_probs=108.7
Q ss_pred CCCCcHHHHHHHHHhhc-----------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH
Q 000379 43 NFIPRIYQLKVFEVAKR-----------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-----------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
..-||.||.+++.++.+ ++++++++||||||++++.+++.++. ....+++|||||+..|+.||.+
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~----~~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE----LLKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh----hcCCCeEEEEECcHHHHHHHHH
Confidence 45589999999987731 46999999999999999999888764 2345679999999999999999
Q ss_pred HHHhhcCCcEEEEECCCCCCccchhHHHHhcC--CCcEEEEcHHHHHHHHHhc--CcCccce-eEEEEeCcccccCCChH
Q 000379 112 VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEIN--KNDVLVMTPQILLDALRKA--FLSLDIV-CFIVIDECHHATGNHPY 186 (1604)
Q Consensus 112 ~i~~~~~~~v~~~~G~~~~~~~~~~~w~~~~~--~~~ViV~T~q~Ll~~l~~~--~~~l~~i-~llI~DEaH~~~~~~~~ 186 (1604)
.|+.+....+ .+.. +...+...+. ..+|+|+|.|.|.+.+... ....... .+||+|||||.... .+
T Consensus 312 ~f~~~~~~~~---~~~~-----s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~-~~ 382 (667)
T TIGR00348 312 EFQSLQKDCA---ERIE-----SIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG-EL 382 (667)
T ss_pred HHHhhCCCCC---cccC-----CHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch-HH
Confidence 9998653111 1111 1122223232 4689999999998644321 1112222 28999999998643 56
Q ss_pred HHHHHHHHhhcCCCCcEEEEeccCCCC
Q 000379 187 TKIMKEFYHKSDNKPKVFGMTASPVVR 213 (1604)
Q Consensus 187 ~~im~~~~~~~~~~p~iLgLTATP~~~ 213 (1604)
...|+.++ +...+|||||||...
T Consensus 383 ~~~l~~~~----p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 383 AKNLKKAL----KNASFFGFTGTPIFK 405 (667)
T ss_pred HHHHHhhC----CCCcEEEEeCCCccc
Confidence 66676543 456899999999864
No 106
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=99.86 E-value=2.8e-22 Score=202.82 Aligned_cols=121 Identities=38% Similarity=0.436 Sum_probs=98.0
Q ss_pred hHHHHHhhccCCCC--CCCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHHHHHHHhCCCcccccc
Q 000379 1059 SSLILEALTTLGCC--ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136 (1604)
Q Consensus 1059 ~~lll~AlT~~s~~--~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i~~ 1136 (1604)
++++++||||+|+. ...||||||||||++|+++++.++|.++|. +||.++..|+.+|+|.+|+.+|.++||+++|+.
T Consensus 2 ~~Ll~~alTH~S~~~~~~~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~~ 80 (128)
T PF14622_consen 2 DELLLQALTHKSYAHERKPNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDKLIRW 80 (128)
T ss_dssp HHHHHHHTB-HHHHHHTCB-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B-
T ss_pred HHHHHHHhcCccccccccCccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHHHHHh
Confidence 68999999999984 356999999999999999999999999555 899999999999999999999999999999996
Q ss_pred ccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCChHH
Q 000379 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIA 1216 (1604)
Q Consensus 1137 ~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G~~~ 1216 (1604)
.+ +.. .......+|.+||++||+|||+|+|+|.+.
T Consensus 81 ~~---------~~~------------------------------------~~~~~~~~~vlad~feAliGAiyld~G~~~ 115 (128)
T PF14622_consen 81 GP---------GEE------------------------------------KSGGSGSDKVLADVFEALIGAIYLDSGFEA 115 (128)
T ss_dssp -H---------HHH------------------------------------HTTGGG-HHHHHHHHHHHHHHHHHHH-HHH
T ss_pred Cc---------cHh------------------------------------hcCCCCCccHHHhHHHHHHHHHHHHcCHHH
Confidence 32 000 001124578999999999999999999999
Q ss_pred HHHHHHHhC
Q 000379 1217 ALYMMKWLG 1225 (1604)
Q Consensus 1217 a~~~~~~lg 1225 (1604)
|.+|+...-
T Consensus 116 a~~~i~~~i 124 (128)
T PF14622_consen 116 ARKFIQKLI 124 (128)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999876543
No 107
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.85 E-value=1e-20 Score=223.16 Aligned_cols=371 Identities=19% Similarity=0.239 Sum_probs=232.0
Q ss_pred CCCCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 40 NSINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
....|++-|+|..++..+- ++.++|.+-|.+|||.+|-..|..-+. .+.||++..|-++|.+|-++++...++
T Consensus 124 k~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr------~kQRVIYTSPIKALSNQKYREl~~EF~ 197 (1041)
T KOG0948|consen 124 KTYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR------EKQRVIYTSPIKALSNQKYRELLEEFK 197 (1041)
T ss_pred cCCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH------hcCeEEeeChhhhhcchhHHHHHHHhc
Confidence 3457889999999999886 488999999999999999998877665 567899999999999999999987664
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcC
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1604)
.|+.++|+...+. ++..+|||.++|.++|.+|.--|..+.+|||||+|-+.+.. -.-+..+-.-..+
T Consensus 198 -DVGLMTGDVTInP-----------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkE-RGVVWEETIIllP 264 (1041)
T KOG0948|consen 198 -DVGLMTGDVTINP-----------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKE-RGVVWEETIILLP 264 (1041)
T ss_pred -ccceeecceeeCC-----------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccc-cceeeeeeEEecc
Confidence 6888999887665 67899999999999999999899999999999999997652 1222222223356
Q ss_pred CCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeee-ccCCCccccchhhhhhhh
Q 000379 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF-YDQSKFCGSDLKGKLEVS 277 (1604)
Q Consensus 199 ~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~-y~~~~~~~~~l~~~~~~~ 277 (1604)
...|.+.||||..+ +..+.+.|..+.+--...+||- | +|+....| |..- ...+...+..
T Consensus 265 ~~vr~VFLSATiPN------A~qFAeWI~~ihkQPcHVVYTd--------y--RPTPLQHyifP~g---gdGlylvVDe- 324 (1041)
T KOG0948|consen 265 DNVRFVFLSATIPN------ARQFAEWICHIHKQPCHVVYTD--------Y--RPTPLQHYIFPAG---GDGLYLVVDE- 324 (1041)
T ss_pred ccceEEEEeccCCC------HHHHHHHHHHHhcCCceEEeec--------C--CCCcceeeeecCC---CCeeEEEEec-
Confidence 77899999999643 3456666666655443334432 1 11111111 1100 0000000000
Q ss_pred hhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000379 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1604)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1604)
+..|.+ ..+...+.
T Consensus 325 ---------------k~~Fre-------------dnF~~am~-------------------------------------- 338 (1041)
T KOG0948|consen 325 ---------------KGKFRE-------------DNFQKAMS-------------------------------------- 338 (1041)
T ss_pred ---------------ccccch-------------HHHHHHHH--------------------------------------
Confidence 000000 00000000
Q ss_pred HHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC
Q 000379 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1604)
Q Consensus 358 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~ 437 (1604)
.+...-........+................-+.++++.+.. +....+|||+=++..|+.++--+.++
T Consensus 339 ---------~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~---~~~~PVIvFSFSkkeCE~~Alqm~kl 406 (1041)
T KOG0948|consen 339 ---------VLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME---RNYLPVIVFSFSKKECEAYALQMSKL 406 (1041)
T ss_pred ---------HhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHh---hcCCceEEEEecHhHHHHHHHhhccC
Confidence 000000000000000000000000011112234444444432 23346999999998887776555332
Q ss_pred -----------------------------CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEcccccccc
Q 000379 438 -----------------------------PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488 (1604)
Q Consensus 438 -----------------------------~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGI 488 (1604)
|.+.++.+...-|-+.++.++-+--++-+.-.|.+|-+++|+||...+-|+
T Consensus 407 dfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGL 486 (1041)
T KOG0948|consen 407 DFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGL 486 (1041)
T ss_pred cCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhcc
Confidence 222223233333444444557777777788889999999999999999999
Q ss_pred CCCCccEEE----EcCCC----CCHHHHHHHhhhhcccCc----eEEEEEe
Q 000379 489 HVPNCSYVI----RFDLP----KTVSSYIQSRGRARQHNS----QFILMLE 527 (1604)
Q Consensus 489 Dip~~nlVI----~fD~p----~s~~syiQr~GRA~R~gs----~~i~~v~ 527 (1604)
|+|+-.+|+ -||-- -+.-.|||+.|||||.|- -+|+|++
T Consensus 487 NMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiD 537 (1041)
T KOG0948|consen 487 NMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMID 537 (1041)
T ss_pred CCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEec
Confidence 999887776 35532 266789999999999994 2666665
No 108
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=2.1e-20 Score=237.38 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=128.6
Q ss_pred CCCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC
Q 000379 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~ 119 (1604)
...|+|-++|++++..+. +.+++|++|||+|||+++..+|...+. .+.++++..|.++|++|.+..+...++-
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~------~~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR------DGQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH------cCCceEeccchhhhhhhHHHHHHHHhhh
Confidence 368999999999999886 589999999999999999998877655 3445999999999999999999987763
Q ss_pred ---cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhh
Q 000379 120 ---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 120 ---~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
.+++++|+..++. .+.|+|||.++|.+++.++...+..+..|||||+|.+.+. .-.-+..+....
T Consensus 189 v~~~vGL~TGDv~IN~-----------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~-eRG~VWEE~Ii~ 256 (1041)
T COG4581 189 VADMVGLMTGDVSINP-----------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDR-ERGVVWEEVIIL 256 (1041)
T ss_pred hhhhccceecceeeCC-----------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeecccc-ccchhHHHHHHh
Confidence 3789999988776 7899999999999999999889999999999999999754 222233333444
Q ss_pred cCCCCcEEEEeccCCC
Q 000379 197 SDNKPKVFGMTASPVV 212 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~ 212 (1604)
.+...++++||||..+
T Consensus 257 lP~~v~~v~LSATv~N 272 (1041)
T COG4581 257 LPDHVRFVFLSATVPN 272 (1041)
T ss_pred cCCCCcEEEEeCCCCC
Confidence 5677799999999653
No 109
>smart00535 RIBOc Ribonuclease III family.
Probab=99.85 E-value=3.1e-21 Score=197.52 Aligned_cols=119 Identities=39% Similarity=0.471 Sum_probs=105.3
Q ss_pred HHHHhhccCCCCCCC-CcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHHHHHHHhCCCccccccccC
Q 000379 1061 LILEALTTLGCCESF-SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAF 1139 (1604)
Q Consensus 1061 lll~AlT~~s~~~~~-n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f 1139 (1604)
++++||||+|+.... ||||||||||+||+++++.++|.++|+.++|.|+..|+.+|||++|+++|.++||++||+..++
T Consensus 2 ll~~alth~s~~~~~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~~~ 81 (129)
T smart00535 2 LLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLGRG 81 (129)
T ss_pred HHHHHhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccCch
Confidence 789999999998776 9999999999999999999999999999999999999999999999999999999999997642
Q ss_pred CCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCChHHHHH
Q 000379 1140 DPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALY 1219 (1604)
Q Consensus 1140 ~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G~~~a~~ 1219 (1604)
... ......+|.+||+|||+|||+|+++|++.|.+
T Consensus 82 ~~~---------------------------------------------~~~~~~~k~~a~~~eAliGAi~ld~g~~~~~~ 116 (129)
T smart00535 82 EAI---------------------------------------------SGGRDKPSILADVFEALIGAIYLDSGLEAARE 116 (129)
T ss_pred Hhh---------------------------------------------cCCcccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 110 00014689999999999999999999999999
Q ss_pred HHHHh
Q 000379 1220 MMKWL 1224 (1604)
Q Consensus 1220 ~~~~l 1224 (1604)
|+..+
T Consensus 117 ~i~~~ 121 (129)
T smart00535 117 FIRDL 121 (129)
T ss_pred HHHHH
Confidence 87543
No 110
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.85 E-value=6.5e-19 Score=192.09 Aligned_cols=316 Identities=21% Similarity=0.239 Sum_probs=210.2
Q ss_pred CCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 43 NFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
.-++.++|..+-+.+. +.++||.+-||+|||-+..-.|...+. .+.+|.+..|.+..|-..+..+++-+
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~------~G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN------QGGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh------cCCeEEEecCcccchHHHHHHHHHhh
Confidence 4578999998877664 489999999999999987777766654 56679999999999999999999876
Q ss_pred -CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHH-HHHHHh
Q 000379 118 -DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI-MKEFYH 195 (1604)
Q Consensus 118 -~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i-m~~~~~ 195 (1604)
+..+..+||+..... ...++|+|...|+.... .++++|+||++-. ||..- +-++.-
T Consensus 169 ~~~~I~~Lyg~S~~~f-----------r~plvVaTtHQLlrFk~-------aFD~liIDEVDAF----P~~~d~~L~~Av 226 (441)
T COG4098 169 SNCDIDLLYGDSDSYF-----------RAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAF----PFSDDQSLQYAV 226 (441)
T ss_pred ccCCeeeEecCCchhc-----------cccEEEEehHHHHHHHh-------hccEEEEeccccc----cccCCHHHHHHH
Confidence 489999999864332 36888888888876644 5899999999987 44322 222211
Q ss_pred --hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhc-CCceeeccchhhhhhccCCcceeeeeccCCCccccchhh
Q 000379 196 --KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTL-DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1604)
Q Consensus 196 --~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l-~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~ 272 (1604)
.....-.++.|||||.. +|++.+ ...+.... .-.+|-.+|-....+.
T Consensus 227 ~~ark~~g~~IylTATp~k---------------~l~r~~~~g~~~~~k---lp~RfH~~pLpvPkf~------------ 276 (441)
T COG4098 227 KKARKKEGATIYLTATPTK---------------KLERKILKGNLRILK---LPARFHGKPLPVPKFV------------ 276 (441)
T ss_pred HHhhcccCceEEEecCChH---------------HHHHHhhhCCeeEee---cchhhcCCCCCCCceE------------
Confidence 12344678999999962 333221 11111000 0001111110000000
Q ss_pred hhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000379 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1604)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1604)
-.|.|.
T Consensus 277 --------------------------------------------------w~~~~~------------------------ 282 (441)
T COG4098 277 --------------------------------------------------WIGNWN------------------------ 282 (441)
T ss_pred --------------------------------------------------EeccHH------------------------
Confidence 000000
Q ss_pred hhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHH
Q 000379 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1604)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~ 432 (1604)
+. +..+...+| |..+|+... +.+..++||+++..+.+.++.
T Consensus 283 -------------k~----------------------l~r~kl~~k---l~~~lekq~-~~~~P~liF~p~I~~~eq~a~ 323 (441)
T COG4098 283 -------------KK----------------------LQRNKLPLK---LKRWLEKQR-KTGRPVLIFFPEIETMEQVAA 323 (441)
T ss_pred -------------HH----------------------hhhccCCHH---HHHHHHHHH-hcCCcEEEEecchHHHHHHHH
Confidence 00 000011233 344444433 345679999999999999999
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCC--CCHHHHHH
Q 000379 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP--KTVSSYIQ 510 (1604)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p--~s~~syiQ 510 (1604)
.|+.. +....++++|+. ...|.+.+++||+|++.+||+|.++|+|+-+|+++++|.=.-- -+-.+.+|
T Consensus 324 ~lk~~--~~~~~i~~Vhs~--------d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQ 393 (441)
T COG4098 324 ALKKK--LPKETIASVHSE--------DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQ 393 (441)
T ss_pred HHHhh--CCccceeeeecc--------CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHH
Confidence 99652 345677888876 5678999999999999999999999999999999987754333 57889999
Q ss_pred HhhhhcccCce---EEEEEeccCHHHHHHHHH
Q 000379 511 SRGRARQHNSQ---FILMLERGNLKQRNKLFD 539 (1604)
Q Consensus 511 r~GRA~R~gs~---~i~~v~~~~~~~~~~l~~ 539 (1604)
-.||+||.-.. -++|+..|..+.+.+..+
T Consensus 394 IaGRvGRs~~~PtGdv~FFH~G~skaM~~A~k 425 (441)
T COG4098 394 IAGRVGRSLERPTGDVLFFHYGKSKAMKQARK 425 (441)
T ss_pred HhhhccCCCcCCCCcEEEEeccchHHHHHHHH
Confidence 99999997532 566666676555444333
No 111
>PRK12371 ribonuclease III; Reviewed
Probab=99.84 E-value=2.4e-21 Score=215.11 Aligned_cols=207 Identities=16% Similarity=0.184 Sum_probs=134.3
Q ss_pred CCHHHHHHHHHHhCCccCCHHHHHHHHccCCCCC--CCchH----------------HHHHHhcccChHHHHHHHHHHHc
Q 000379 1249 PRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQ----------------NLYKHLQHCSTLLLSQITEYVKS 1310 (1604)
Q Consensus 1249 ~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~--~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~ 1310 (1604)
+....+..||++|||+|+|+.||.+||||+|+.. ..||| +||+++|..++|.++.++..+++
T Consensus 7 ~~~~~~~~le~~lgy~F~~~~Ll~~AlTH~S~~~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~ 86 (235)
T PRK12371 7 LAAATASILEERTGHRFANKERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVN 86 (235)
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHcCcCcccCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhC
Confidence 3455788999999999999999999999999976 45899 79999999999999999888765
Q ss_pred CCCCCCCCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHhcCCccee
Q 000379 1311 FPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKE 1390 (1604)
Q Consensus 1311 ~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~~~i~~~~~~~~p~~~L~e~~~~~~~~~~~ 1390 (1604)
-..... +...--|++.+ ..|--.-..+. ....+++.+.++.++
T Consensus 87 n~~La~-------ia~~lgL~~~i--~~~~~~~~~~~--~~~~~ilad~~EAli-------------------------- 129 (235)
T PRK12371 87 AETCAA-------IADEIGLHDLI--RTGSDVKKLTG--KRLLNVRADVVEALI-------------------------- 129 (235)
T ss_pred hHHHHH-------HHHHCCcHHHh--ccCcchhhcCC--cccchHHHHHHHHHH--------------------------
Confidence 111100 00000011111 00000000000 000011111111111
Q ss_pred eeeeeCceEEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCcCCCccccCCCCCCCCCcc
Q 000379 1391 NCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPS 1470 (1604)
Q Consensus 1391 ~~~~~g~~~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1470 (1604)
..|++|++ ..+|+..+..+.... .
T Consensus 130 ------------GAiylD~G---------------~~~a~~~i~~~~~~~-~---------------------------- 153 (235)
T PRK12371 130 ------------AAIYLDGG---------------LEAARPFIQRYWQKR-A---------------------------- 153 (235)
T ss_pred ------------HHHHHcCC---------------HHHHHHHHHHHHHHH-H----------------------------
Confidence 23444444 567777776665410 0
Q ss_pred cccccCccccccCCCcccccccccCCCccccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCccccc
Q 000379 1471 CKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTG 1550 (1604)
Q Consensus 1471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~ 1550 (1604)
..+.....|||+.||||||++++..|.|+++++ +||+|.
T Consensus 154 ------------------------------~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~---------~Gp~h~-- 192 (235)
T PRK12371 154 ------------------------------LETDAARRDAKTELQEWAHAQFGVTPVYRVDSR---------SGPDHD-- 192 (235)
T ss_pred ------------------------------hccccccCCHHHHHHHHHHhcCCCCCeEEEEEe---------ecCCCC--
Confidence 000011368999999999999999999999987 899999
Q ss_pred ceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHHHHHH
Q 000379 1551 FSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELER 1595 (1604)
Q Consensus 1551 ~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~l~~l~~ 1595 (1604)
+.|++.|.+. +...+.|.| +|||+|+|.||+.||..|..
T Consensus 193 -~~F~v~v~v~----~~~~~~g~G-~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 193 -PRFTVEVEVK----GFAPETGEG-RSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred -CeEEEEEEEC----CEEEEEeee-CCHHHHHHHHHHHHHHHhhh
Confidence 8999998873 444566766 67999999999999998864
No 112
>PRK14718 ribonuclease III; Provisional
Probab=99.84 E-value=2e-21 Score=222.74 Aligned_cols=203 Identities=20% Similarity=0.213 Sum_probs=133.4
Q ss_pred HHHHHHHhCCccCCHHHHHHHHccCCCCCCCchH----------------HHHHHhcccChHHHHHHHHHHHcCCCCCCC
Q 000379 1254 IKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFPKPGET 1317 (1604)
Q Consensus 1254 ~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 1317 (1604)
+..||++|||+|+|+.||.+||||+||.. .+|| +||+.||..++|.++.++..+++-.....
T Consensus 3 l~~LEkrLGY~Fkn~~LL~eALTH~Sys~-e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetLA~- 80 (467)
T PRK14718 3 LSQLESRLRYEFRNAELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYE- 80 (467)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhccCcCc-ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHHHH-
Confidence 56799999999999999999999999976 4788 89999999999999999999987222111
Q ss_pred CCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHhcCCcceeeeeeeCc
Q 000379 1318 TDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGE 1397 (1604)
Q Consensus 1318 ~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~~~i~~~~~~~~p~~~L~e~~~~~~~~~~~~~~~~g~ 1397 (1604)
+....-|++.+ ++|--...+|. ....+++.+.++.+|
T Consensus 81 ------IAr~LGL~d~L--rlg~gE~~sgG--~~~~sILADvFEALI--------------------------------- 117 (467)
T PRK14718 81 ------IAQALNISDGL--RLGEGELRSGG--FRRPSILADAFEAII--------------------------------- 117 (467)
T ss_pred ------HHHHcCchHHH--hhCCcccccCC--CCChhHHHHHHHHHH---------------------------------
Confidence 00011112222 11111111111 001112222222221
Q ss_pred eEEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCcCCCccccCCCCCCCCCcccccccCc
Q 000379 1398 MVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGT 1477 (1604)
Q Consensus 1398 ~~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1477 (1604)
..||++++ ..+++..+..+.... . +.
T Consensus 118 -----GAIYLDsG---------------~e~a~~fI~~ll~p~-i-----------------------~~---------- 143 (467)
T PRK14718 118 -----GAVFLDGG---------------FEAAQGVIKRLYVPI-L-----------------------DH---------- 143 (467)
T ss_pred -----HHHHHccC---------------HHHHHHHHHHHHHHH-H-----------------------hh----------
Confidence 33455554 456777777665410 0 00
Q ss_pred cccccCCCcccccccccCCCccccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEE
Q 000379 1478 EAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSK 1557 (1604)
Q Consensus 1478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~ 1557 (1604)
.+. .....|||+.||||||++++..|+|.++.+ +||+|. +.|++.
T Consensus 144 ----------------------~d~-~~~~kDyKS~LQE~~Qk~~~~~PeY~li~e---------sGPdH~---k~F~V~ 188 (467)
T PRK14718 144 ----------------------IDP-RTLGKDAKTLLQEYLQGHKIALPTYTVVAT---------HGAAHN---QQFEVE 188 (467)
T ss_pred ----------------------hcc-cccccCHHHHHHHHHHhcCCCCCeeEEeee---------ecCCCC---CeEEEE
Confidence 000 001368999999999999999999999988 899999 899988
Q ss_pred EEEEecCCceEEEeCCCCCCccchhhhHHHHHHHHHH
Q 000379 1558 ITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELE 1594 (1604)
Q Consensus 1558 v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~l~~l~ 1594 (1604)
|.+. +..+.+.|.| +|||.|||.||+.||+.|+
T Consensus 189 V~v~---g~~~~G~G~G-~SKKeAEQ~AAk~AL~kL~ 221 (467)
T PRK14718 189 CTVP---KLDIKVSGSG-ASRRAAEQAAAKKALDEVT 221 (467)
T ss_pred EEEC---CeeeEEEEEc-CCHHHHHHHHHHHHHHHhc
Confidence 8873 2234456666 6699999999999999986
No 113
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.84 E-value=3.3e-21 Score=198.75 Aligned_cols=119 Identities=40% Similarity=0.554 Sum_probs=107.8
Q ss_pred HHHHhhccCCCCCC---CCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHHHHHHHhCCCccccccc
Q 000379 1061 LILEALTTLGCCES---FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1137 (1604)
Q Consensus 1061 lll~AlT~~s~~~~---~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~ 1137 (1604)
++++||||+|+... .||||||||||++|+++++.++|..+|+.++|.|+.+|+.+|||++|+++|.++||++||+..
T Consensus 2 ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~~ 81 (133)
T cd00593 2 LLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRLG 81 (133)
T ss_pred HHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhccC
Confidence 68999999999765 899999999999999999999999999999999999999999999999999999999999977
Q ss_pred cCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCChHHH
Q 000379 1138 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAA 1217 (1604)
Q Consensus 1138 ~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G~~~a 1217 (1604)
+.... ......+|.+||+|||||||+|+++|.+.|
T Consensus 82 ~~~~~---------------------------------------------~~~~~~~k~~ad~~eAliGAiyld~g~~~~ 116 (133)
T cd00593 82 KGEEK---------------------------------------------SGGRLRPKILADVFEALIGAIYLDGGFEAA 116 (133)
T ss_pred chHhh---------------------------------------------cCCcccccHHHHHHHHHHHHHHHhCCHHHH
Confidence 52211 012367899999999999999999999999
Q ss_pred HHHHHHh
Q 000379 1218 LYMMKWL 1224 (1604)
Q Consensus 1218 ~~~~~~l 1224 (1604)
.+|+.++
T Consensus 117 ~~~i~~~ 123 (133)
T cd00593 117 RKFLLRL 123 (133)
T ss_pred HHHHHHH
Confidence 9999886
No 114
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.84 E-value=1.8e-20 Score=205.96 Aligned_cols=170 Identities=24% Similarity=0.285 Sum_probs=123.8
Q ss_pred CCchHHHHHHHHhcCCcceeeeee-eCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhcccCC
Q 000379 1371 LPPLRELIELCDSLGYFVKENCTL-KGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGA 1447 (1604)
Q Consensus 1371 ~~p~~~L~e~~~~~~~~~~~~~~~-~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~ 1447 (1604)
+.|++.|+|++.+.+..+.+.+.. +|+. +.|+++|.++ ++.+.|.|+|||.||++||+.+|..|+.. .
T Consensus 38 KS~IS~l~E~~~r~~~~v~fevl~eeGp~H~~~fv~rvtvg--~~~a~GeG~sKK~AKh~AA~~~L~~lk~l-------~ 108 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPVYEVLREEGPPHMPNFVFRVTVG--EITATGEGKSKKLAKHRAAEALLKELKKL-------P 108 (339)
T ss_pred CChHHHHHHHHHHhCCCcceeeeeccCCccCCCeEEEEEEe--eeEEecCCCchhHHHHHHHHHHHHHHhcC-------C
Confidence 899999999999999998877665 5664 7788888886 48999999999999999999999999971 1
Q ss_pred CCCCcCCCccccCCCCCCCCCcccccccCccccccCCCcccccccccCCCccccccccccCCchhhHHHHHHhCCCCCCc
Q 000379 1448 SNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPT 1527 (1604)
Q Consensus 1448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~ 1527 (1604)
.........-.. ..++.... . + + .+ .++......||+++|||+||+++|+.|+
T Consensus 109 ~l~~v~k~~~~~---~~~~~~~~----------~-------~----~--q~-~d~~~~~~~NPI~~L~e~~q~k~~k~P~ 161 (339)
T KOG3732|consen 109 PLANVRKDSLKF---AKMKSSGV----------K-------K----D--QP-GDPEYGQVLNPIGRLQELAQAKKWKLPE 161 (339)
T ss_pred CccccccCcccc---cccccCCc----------c-------c----c--CC-CCcccccccChHHHHHHHHHHhCCCCCc
Confidence 000000000000 00000000 0 0 0 00 0111122578899999999999999999
Q ss_pred eeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHHHHH
Q 000379 1528 FETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELE 1594 (1604)
Q Consensus 1528 y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~l~~l~ 1594 (1604)
|+++++ .|++|+ |+||+.|++. .+...|.| +|||.||++||..||..|.
T Consensus 162 yelv~E---------~G~~~~---rEFv~q~sv~-----~~~~~GkG-~sKKiAKRnAAeamLe~l~ 210 (339)
T KOG3732|consen 162 YELVQE---------SGVPHR---REFVIQCSVE-----NFTEEGKG-PSKKIAKRNAAEAMLESLG 210 (339)
T ss_pred eEEEec---------cCCCcc---ceEEEEEEec-----ceeeecCC-chHHHHHHHHHHHHHHHhc
Confidence 999999 899999 9999999884 33445666 6799999999999999886
No 115
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.84 E-value=8e-20 Score=221.05 Aligned_cols=153 Identities=19% Similarity=0.198 Sum_probs=124.0
Q ss_pred CCCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC
Q 000379 41 SINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~ 119 (1604)
...|+|-.+|++|+..+.+ ..+.|+|+|.+|||++|-..|.-.. ....++++..|-++|.+|-++.|+..++
T Consensus 293 ~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq------~h~TR~iYTSPIKALSNQKfRDFk~tF~- 365 (1248)
T KOG0947|consen 293 IYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ------KHMTRTIYTSPIKALSNQKFRDFKETFG- 365 (1248)
T ss_pred hCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH------hhccceEecchhhhhccchHHHHHHhcc-
Confidence 3578999999999999975 6788999999999999988764322 2456799999999999999999998775
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCC
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~ 199 (1604)
.+++++|+..+.. .+.++|||.++|.++|.+|.--+.++..|||||+|-+.+. .-.-+..+..-..+.
T Consensus 366 DvgLlTGDvqinP-----------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~-eRGvVWEEViIMlP~ 433 (1248)
T KOG0947|consen 366 DVGLLTGDVQINP-----------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDV-ERGVVWEEVIIMLPR 433 (1248)
T ss_pred ccceeecceeeCC-----------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccc-cccccceeeeeeccc
Confidence 3448999876654 7899999999999999999888899999999999988543 223334444445577
Q ss_pred CCcEEEEeccCCC
Q 000379 200 KPKVFGMTASPVV 212 (1604)
Q Consensus 200 ~p~iLgLTATP~~ 212 (1604)
...++.||||..+
T Consensus 434 HV~~IlLSATVPN 446 (1248)
T KOG0947|consen 434 HVNFILLSATVPN 446 (1248)
T ss_pred cceEEEEeccCCC
Confidence 7889999999654
No 116
>PRK12372 ribonuclease III; Reviewed
Probab=99.83 E-value=4.3e-21 Score=219.75 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=61.7
Q ss_pred CCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHH
Q 000379 1508 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAAL 1587 (1604)
Q Consensus 1508 ~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~ 1587 (1604)
.|||+.||||||++++..|+|+++.+ +||+|. +.|++.|.+. +..+.+.|.| +|||.|||.||+
T Consensus 151 ~D~KS~LQE~~Q~~~~~~P~Y~lv~e---------~Gp~h~---~~F~V~V~v~---g~~~~g~G~G-~SKKeAEQ~AAr 214 (413)
T PRK12372 151 KDAKTLLQEYLQGHKIALPTYTVVAT---------HGAAHN---QQFEVECTVP---KLDVKVSGSG-ASRRAAEQAAAK 214 (413)
T ss_pred CCHHHHHHHHHHhcCCCCCeeEEeee---------ecCCCC---ceEEEEEEEC---CeEEEEEEEe-CCHHHHHHHHHH
Confidence 57999999999999999999999988 899999 8999888873 2234446666 669999999999
Q ss_pred HHHHHHHH
Q 000379 1588 IMLHELER 1595 (1604)
Q Consensus 1588 ~~l~~l~~ 1595 (1604)
.||+.|..
T Consensus 215 ~AL~kL~~ 222 (413)
T PRK12372 215 KALDEVMA 222 (413)
T ss_pred HHHHHHhc
Confidence 99999974
No 117
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.82 E-value=1.8e-19 Score=222.89 Aligned_cols=160 Identities=24% Similarity=0.349 Sum_probs=116.9
Q ss_pred CCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHHHHhh-----CCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 44 FIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKS-----NGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~~~~~-----~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
-.+...|..+...+++ .|+++|||||+|||-+|++-|.+.+..... .-...++++++|.++||+.|...|.+.
T Consensus 308 ~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkR 387 (1674)
T KOG0951|consen 308 QSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKR 387 (1674)
T ss_pred hhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhh
Confidence 3488999999999985 999999999999999999977776642111 112346999999999999999998875
Q ss_pred c---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcC---cCccceeEEEEeCcccccCCC-h-HHH
Q 000379 117 T---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF---LSLDIVCFIVIDECHHATGNH-P-YTK 188 (1604)
Q Consensus 117 ~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~---~~l~~i~llI~DEaH~~~~~~-~-~~~ 188 (1604)
+ |+.|...+|+..... ..++..+|+||||+.. +.+.+.. --.+-++++|+||.|...++. | ...
T Consensus 388 la~~GI~V~ElTgD~~l~~-------~qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLES 459 (1674)
T KOG0951|consen 388 LAPLGITVLELTGDSQLGK-------EQIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLES 459 (1674)
T ss_pred ccccCcEEEEecccccchh-------hhhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHH
Confidence 4 889999999865432 4456899999999987 2333221 112347899999999996442 2 233
Q ss_pred HHHHHHhh---cCCCCcEEEEeccCC
Q 000379 189 IMKEFYHK---SDNKPKVFGMTASPV 211 (1604)
Q Consensus 189 im~~~~~~---~~~~p~iLgLTATP~ 211 (1604)
|....... ....+|++|||||..
T Consensus 460 IVaRt~r~ses~~e~~RlVGLSATLP 485 (1674)
T KOG0951|consen 460 IVARTFRRSESTEEGSRLVGLSATLP 485 (1674)
T ss_pred HHHHHHHHhhhcccCceeeeecccCC
Confidence 44333332 235699999999964
No 118
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.82 E-value=3.1e-21 Score=192.67 Aligned_cols=114 Identities=40% Similarity=0.586 Sum_probs=91.3
Q ss_pred chhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCC
Q 000379 1078 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPC 1157 (1604)
Q Consensus 1078 ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~ 1157 (1604)
||||||||+||+++++.+||.+||+.+||.||.+|+.+|||.+|+++|.++||+.||+..+|+...|.+|...... .
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~---~ 77 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLN---N 77 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHH---h
Confidence 8999999999999999999999999999999999999999999999999999999999999998877766110000 0
Q ss_pred CCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCC
Q 000379 1158 ECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG 1213 (1604)
Q Consensus 1158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G 1213 (1604)
.. + . .....+...+...+|++||+|||||||+|+|+|
T Consensus 78 ~~----------~-------~--~~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 78 GD----------S-------E--SSISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -----------------------C-SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cc----------c-------c--cccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 00 0 0 000001114557899999999999999999998
No 119
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.82 E-value=2.5e-17 Score=186.08 Aligned_cols=470 Identities=17% Similarity=0.220 Sum_probs=256.5
Q ss_pred CCCCCCCCcHHHHHHHHHhhc------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH
Q 000379 39 TNSINFIPRIYQLKVFEVAKR------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 39 ~~~~~~~pr~yQ~e~l~~~l~------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
+....+.+-|||.|.+.++.. ...|+++++|.|||..++.++.... .+...|++||+++| .||.++
T Consensus 178 P~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~-------~ra~tLVvaP~VAl-mQW~nE 249 (791)
T KOG1002|consen 178 PDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV-------DRAPTLVVAPTVAL-MQWKNE 249 (791)
T ss_pred cccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc-------ccCCeeEEccHHHH-HHHHHH
Confidence 334567789999999999864 5689999999999999988766532 23338999999998 689999
Q ss_pred HHhhc--CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHh---cC------------cCccceeEEEEe
Q 000379 113 IRVHT--DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK---AF------------LSLDIVCFIVID 175 (1604)
Q Consensus 113 i~~~~--~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~---~~------------~~l~~i~llI~D 175 (1604)
|.+++ .+++-+|+|...... -+.+.+++|+.+|+.++-..+++ |+ +.--.|.-||+|
T Consensus 250 I~~~T~gslkv~~YhG~~R~~n------ikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlD 323 (791)
T KOG1002|consen 250 IERHTSGSLKVYIYHGAKRDKN------IKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILD 323 (791)
T ss_pred HHHhccCceEEEEEecccccCC------HHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehh
Confidence 99998 478888999764332 34567999999999999877765 21 112246679999
Q ss_pred CcccccCCC-hHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeec--------------
Q 000379 176 ECHHATGNH-PYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI-------------- 240 (1604)
Q Consensus 176 EaH~~~~~~-~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~-------------- 240 (1604)
|||.+.... .-++.+-.+ ...+.+.||+||.++. ...+..|-+.|+..-++.
T Consensus 324 EAH~IK~R~snTArAV~~L-----~tt~rw~LSGTPLQNr--------igElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ 390 (791)
T KOG1002|consen 324 EAHNIKDRQSNTARAVFAL-----ETTYRWCLSGTPLQNR--------IGELYSLIRFLNINPFSYYFCTKCDCASLDWK 390 (791)
T ss_pred hhcccccccccHHHHHHhh-----HhhhhhhccCCcchhh--------HHHHHHHHHHHccCcchhhhhhhcccccccee
Confidence 999997542 222222221 3467899999999875 234455554444432211
Q ss_pred -cchhhhhhccCCcceeeeeccCCCccc--------cch--hhhhhhh-------hhhhc--------hhHHHHHH----
Q 000379 241 -EDKTEMEVFVPSAKESCRFYDQSKFCG--------SDL--KGKLEVS-------WSKFD--------ASLSKLQG---- 290 (1604)
Q Consensus 241 -~~~~~l~~~~~~p~e~~~~y~~~~~~~--------~~l--~~~~~~~-------~~~~~--------~~~~~l~~---- 290 (1604)
++|..-....+.+.....++.....-+ .+. ...+... ..++. +.+.....
T Consensus 391 ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn 470 (791)
T KOG1002|consen 391 FTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFN 470 (791)
T ss_pred ecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhh
Confidence 111110011111111111111110000 000 0000000 00000 00000000
Q ss_pred -h----HhhhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHhhhh----------HHHHHHHH
Q 000379 291 -S----QLNCYKDMDDKHKTLR--KQLSDYHAKILYCLDELGLICAYEAV--KICLEKVLKA----------QEECEIYR 351 (1604)
Q Consensus 291 -~----~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~lG~~~~~~~~--~~~~~~~~~~----------~~~~~~~~ 351 (1604)
. -.+.|.+-..+...+. .-+.+.+..+...+..+-..+..... ......+... .+..+.+-
T Consensus 471 ~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i 550 (791)
T KOG1002|consen 471 EEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYI 550 (791)
T ss_pred hHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhH
Confidence 0 0111111111222221 11223333333322222111110000 0000000000 00000000
Q ss_pred Hhh---HHHH----HHHHHHHHHHhhhcCccchh-hccccC--------------Cccc--ccccCCCCHHHHHHHHHHH
Q 000379 352 QSS---LQCK----YFLEEVLHVIGSALPLADKI-FLDFGF--------------DYSK--AVDLGYISTKLHELLQLFL 407 (1604)
Q Consensus 352 ~~~---~~~~----~~~~~~~~~l~~~~~~~~~~-~~~~~~--------------~~~~--~~~~~~~s~K~~~L~~lL~ 407 (1604)
... ..|+ +|+........-.++..... .++.+. .... .......|.|+++|.+-|.
T Consensus 551 ~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~ 630 (791)
T KOG1002|consen 551 ESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELY 630 (791)
T ss_pred hhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHH
Confidence 000 0111 11111111111001100000 000000 0001 1123446889999998765
Q ss_pred hhCC-CCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC-CceE-EEEcccc
Q 000379 408 SFGK-STQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG-KVNL-LFATDVI 484 (1604)
Q Consensus 408 ~~~~-~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g-~~~i-LIaT~vl 484 (1604)
...+ ....+.|||.+.-...+.+...|.+ .|+.|.-+.|. |++..|..+++.|.+. .|.| |++-.++
T Consensus 631 ~l~~rd~t~KsIVFSQFTSmLDLi~~rL~k----aGfscVkL~Gs------Ms~~ardatik~F~nd~~c~vfLvSLkAG 700 (791)
T KOG1002|consen 631 FLRERDRTAKSIVFSQFTSMLDLIEWRLGK----AGFSCVKLVGS------MSPAARDATIKYFKNDIDCRVFLVSLKAG 700 (791)
T ss_pred HHHHcccchhhhhHHHHHHHHHHHHHHhhc----cCceEEEeccC------CChHHHHHHHHHhccCCCeEEEEEEeccC
Confidence 4332 3446889999999999999888887 68999999999 9999999999999986 4664 6788999
Q ss_pred ccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHHHHHHHHHHHHHHhh
Q 000379 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQRNKLFDIIRSERSV 547 (1604)
Q Consensus 485 eeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~~~~l~~~~~~e~~~ 547 (1604)
+..+|+..+..|+.+|+.||+.--.|...|..|.|+. ++.|.-+...+ +++-++.+++..|
T Consensus 701 GVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE--~kIieLQeKKa~m 765 (791)
T KOG1002|consen 701 GVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIE--EKIIELQEKKANM 765 (791)
T ss_pred ceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHH--HHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999984 66665544444 3333444443334
No 120
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=3e-19 Score=218.20 Aligned_cols=436 Identities=17% Similarity=0.160 Sum_probs=249.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec
Q 000379 27 GHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1604)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~pr~yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP 101 (1604)
+|.+......++.....-++++||...++++.. -|.|++.+||.|||...+.+|.++++.....+ + -+|+||
T Consensus 376 AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~G--P-~LvivP 452 (1157)
T KOG0386|consen 376 AHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQG--P-FLIIVP 452 (1157)
T ss_pred cchhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCC--C-eEEecc
Confidence 334444444556666667999999999999963 67999999999999999999999987433333 3 699999
Q ss_pred ChhhHHHHHHHHHhhc-CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccc
Q 000379 102 TVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHA 180 (1604)
Q Consensus 102 t~~Lv~Q~~~~i~~~~-~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~ 180 (1604)
+..|++ |..+|..+. .+..+.+.|..... +.-.-+....+.+|+++|++-+.. .+..+.--+|..+|+||.|++
T Consensus 453 lstL~N-W~~Ef~kWaPSv~~i~YkGtp~~R--~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRm 527 (1157)
T KOG0386|consen 453 LSTLVN-WSSEFPKWAPSVQKIQYKGTPQQR--SGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRM 527 (1157)
T ss_pred ccccCC-chhhccccccceeeeeeeCCHHHH--hhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccc
Confidence 988876 899998876 46777777753221 111122333789999999998865 333444456889999999999
Q ss_pred cCCCh-HHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCC---ceeeccchhhhhhccCCccee
Q 000379 181 TGNHP-YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS---QVFTIEDKTEMEVFVPSAKES 256 (1604)
Q Consensus 181 ~~~~~-~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~---~i~t~~~~~~l~~~~~~p~e~ 256 (1604)
...+. ....+.. ....+++|+||+||..++ +.+|+.+|+- .|+. ....+..+...|-..
T Consensus 528 KNa~~KLt~~L~t----~y~~q~RLLLTGTPLQN~-----------LpELWaLLNFlLP~IFn--S~~~FeqWFN~PFan 590 (1157)
T KOG0386|consen 528 KNAICKLTDTLNT----HYRAQRRLLLTGTPLQNN-----------LPELWALLNFLLPNIFN--SCKAFEQWFNQPFAN 590 (1157)
T ss_pred cchhhHHHHHhhc----cccchhhhhhcCChhhhc-----------cHHHHHHHHHhccchhh--hHhHHHHHhhhhhhh
Confidence 75432 1222222 235689999999999875 4555555442 2221 112222222222110
Q ss_pred eeeccCCCccccchhhhhhhhhhhhchhHH-HHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHH
Q 000379 257 CRFYDQSKFCGSDLKGKLEVSWSKFDASLS-KLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL-YCLDELGLICAYEAVK 334 (1604)
Q Consensus 257 ~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~lG~~~~~~~~~ 334 (1604)
.- +..........-.++....-+-+++. ++.... -..++++++.+.+.-.+....+. .-...-|....
T Consensus 591 tG--ek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeV---E~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~----- 660 (1157)
T KOG0386|consen 591 TG--EKVELTEEETLLIIRRLHKVLRPFLLRRLKKEV---EQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLK----- 660 (1157)
T ss_pred cC--CcccccchHHHHHHHHHHHhhhHHHHHhhhHHH---hhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCc-----
Confidence 00 00000000000011111111111111 111110 11122222222111111111100 00000000000
Q ss_pred HHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCC
Q 000379 335 ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQ 414 (1604)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~ 414 (1604)
.. ...........+++-.....+. ...-- ..+-...............+.|+..|-.+|.+.. ..+
T Consensus 661 -------d~----~~g~~g~k~L~N~imqLRKiCN-HP~lf-~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLk-atg 726 (1157)
T KOG0386|consen 661 -------DT----AKGKKGYKPLFNTIMQLRKLCN-HPYLF-ANVENSYTLHYDIKDLVRVSGKFELLDRILPKLK-ATG 726 (1157)
T ss_pred -------Cc----hhccccchhhhhHhHHHHHhcC-Cchhh-hhhccccccccChhHHHHhccHHHHHHhhhHHHH-hcC
Confidence 00 0000000011111111111110 00000 0000000000001123345789999999998776 567
Q ss_pred cEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC---ceEEEEccccccccCCC
Q 000379 415 VLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK---VNLLFATDVIEEGMHVP 491 (1604)
Q Consensus 415 ~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~---~~iLIaT~vleeGIDip 491 (1604)
.|++.|++.......+..+|.- .+++...+.|.+ ..++|-+.++.|..-. ..+|.+|..++.|+|++
T Consensus 727 HRVLlF~qMTrlmdimEdyL~~----~~~kYlRLDG~T------K~~eRg~ll~~FN~Pds~yf~FllstragglglNlQ 796 (1157)
T KOG0386|consen 727 HRVLLFSQMTRLMDILEDYLQI----REYKYLRLDGQT------KVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQ 796 (1157)
T ss_pred cchhhHHHHHHHHHHHHHHHhh----hhhheeeecCCc------chhhHHHHHHHhcCCCCceeeeeeeecccccccchh
Confidence 8999999988888888888864 578888899984 6888999999998764 34678999999999999
Q ss_pred CccEEEEcCCCCCHHHHHHHhhhhcccCce
Q 000379 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 492 ~~nlVI~fD~p~s~~syiQr~GRA~R~gs~ 521 (1604)
.++.||.||.-|++..+.|+..||.|.|++
T Consensus 797 tadtviifdsdwnp~~d~qaqdrahrigq~ 826 (1157)
T KOG0386|consen 797 TADTVIIFDSDWNPHQDLQAQDRAHRIGQK 826 (1157)
T ss_pred hcceEEEecCCCCchhHHHHHHHHHHhhch
Confidence 999999999999999999999999999985
No 121
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=190.48 Aligned_cols=294 Identities=18% Similarity=0.292 Sum_probs=196.9
Q ss_pred CCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEE
Q 000379 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
..||.|.+++...+ +.+..+++|||.||++++.+++.- ..+.+|++||...|++.|.-.++ .+|+....
T Consensus 94 kfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~---------adg~alvi~plislmedqil~lk-qlgi~as~ 163 (695)
T KOG0353|consen 94 KFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC---------ADGFALVICPLISLMEDQILQLK-QLGIDASM 163 (695)
T ss_pred hcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh---------cCCceEeechhHHHHHHHHHHHH-HhCcchhh
Confidence 46999999999887 699999999999999999998542 23458999999999999988887 56777666
Q ss_pred EECCCCCCccchhHHH-Hhc----CCCcEEEEcHHHHH------HHHHhcCcCccceeEEEEeCcccccCC-ChHHHHHH
Q 000379 124 YYGAKGVDEWDSQCWQ-KEI----NKNDVLVMTPQILL------DALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMK 191 (1604)
Q Consensus 124 ~~G~~~~~~~~~~~w~-~~~----~~~~ViV~T~q~Ll------~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im~ 191 (1604)
+..+.+... ..|- ..+ .....+..||+.+. +.|.+ .+....+.+|-+||+|+|..+ |.++...+
T Consensus 164 lnansske~---~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek-a~~~~~~~~iaidevhccsqwghdfr~dy~ 239 (695)
T KOG0353|consen 164 LNANSSKEE---AKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK-ALEAGFFKLIAIDEVHCCSQWGHDFRPDYK 239 (695)
T ss_pred ccCcccHHH---HHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH-HhhcceeEEEeecceeehhhhCcccCcchH
Confidence 665544332 1121 111 34689999999773 23332 345667899999999999855 44332221
Q ss_pred H--HHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccc
Q 000379 192 E--FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1604)
Q Consensus 192 ~--~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~ 269 (1604)
. .+...-+...|+|||||-.... .+-...+--++..+ .++.. ..+|. .+|....-
T Consensus 240 ~l~ilkrqf~~~~iigltatatn~v-----l~d~k~il~ie~~~---tf~a~--------fnr~n---l~yev~qk---- 296 (695)
T KOG0353|consen 240 ALGILKRQFKGAPIIGLTATATNHV-----LDDAKDILCIEAAF---TFRAG--------FNRPN---LKYEVRQK---- 296 (695)
T ss_pred HHHHHHHhCCCCceeeeehhhhcch-----hhHHHHHHhHHhhh---eeecc--------cCCCC---ceeEeeeC----
Confidence 1 1112235678999999965321 00011111122111 11110 01110 11110000
Q ss_pred hhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHH
Q 000379 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349 (1604)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1604)
T Consensus 297 -------------------------------------------------------------------------------- 296 (695)
T KOG0353|consen 297 -------------------------------------------------------------------------------- 296 (695)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHH-hhCCCCCcEEEEEEchHHHHH
Q 000379 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAK 428 (1604)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~-~~~~~~~~~~IIFv~~r~ta~ 428 (1604)
++...+-.+.+.++++ .| .+..+||||-++..++
T Consensus 297 ------------------------------------------p~n~dd~~edi~k~i~~~f---~gqsgiiyc~sq~d~e 331 (695)
T KOG0353|consen 297 ------------------------------------------PGNEDDCIEDIAKLIKGDF---AGQSGIIYCFSQKDCE 331 (695)
T ss_pred ------------------------------------------CCChHHHHHHHHHHhcccc---CCCcceEEEeccccHH
Confidence 0000111122222221 12 2346899999999999
Q ss_pred HHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHH
Q 000379 429 VVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508 (1604)
Q Consensus 429 ~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~sy 508 (1604)
.+...|+.+ ++....+|.. |.+.++.-+-+.+-.|++.|+|||-..+.|||-|+++.||+..+|.+...|
T Consensus 332 kva~alkn~----gi~a~~yha~------lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksieny 401 (695)
T KOG0353|consen 332 KVAKALKNH----GIHAGAYHAN------LEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENY 401 (695)
T ss_pred HHHHHHHhc----Cccccccccc------cCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHH
Confidence 999999985 7888888887 889999999999999999999999999999999999999999999999999
Q ss_pred HH
Q 000379 509 IQ 510 (1604)
Q Consensus 509 iQ 510 (1604)
.|
T Consensus 402 yq 403 (695)
T KOG0353|consen 402 YQ 403 (695)
T ss_pred HH
Confidence 99
No 122
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.80 E-value=1.1e-17 Score=189.78 Aligned_cols=396 Identities=14% Similarity=0.123 Sum_probs=226.3
Q ss_pred CCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC--c
Q 000379 45 IPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF--E 120 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~--~ 120 (1604)
.+-|||.+.+..+++ +++++++++|.|||+.|+.++..... ..+ .||+||. .|-.-|++.+.++++. .
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra------Ewp-lliVcPA-svrftWa~al~r~lps~~p 269 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA------EWP-LLIVCPA-SVRFTWAKALNRFLPSIHP 269 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh------cCc-EEEEecH-HHhHHHHHHHHHhcccccc
Confidence 467999999999974 77999999999999999988766543 333 8999998 6778899999999863 4
Q ss_pred EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCC
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK 200 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~ 200 (1604)
+.++.++...-. .......|.|++|+.+..+ +..+.-..+.+|||||+|++.....- -.+......+..
T Consensus 270 i~vv~~~~D~~~-------~~~t~~~v~ivSye~ls~l--~~~l~~~~~~vvI~DEsH~Lk~sktk--r~Ka~~dllk~a 338 (689)
T KOG1000|consen 270 IFVVDKSSDPLP-------DVCTSNTVAIVSYEQLSLL--HDILKKEKYRVVIFDESHMLKDSKTK--RTKAATDLLKVA 338 (689)
T ss_pred eEEEecccCCcc-------ccccCCeEEEEEHHHHHHH--HHHHhcccceEEEEechhhhhccchh--hhhhhhhHHHHh
Confidence 455555443221 1122467999999988533 33444556899999999999754211 122222223455
Q ss_pred CcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhh
Q 000379 201 PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280 (1604)
Q Consensus 201 p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~ 280 (1604)
-|+|+||+||.... +..+...|..+..++... .-++..-..........|+-..... .+++...+.+
T Consensus 339 khvILLSGTPavSR----P~elytqi~avd~tlfp~------f~efa~rYCd~k~vr~~~Dykg~tn---l~EL~~lL~k 405 (689)
T KOG1000|consen 339 KHVILLSGTPAVSR----PSELYTQIRAVDHTLFPN------FHEFAIRYCDGKQVRFCFDYKGCTN---LEELAALLFK 405 (689)
T ss_pred hheEEecCCcccCC----chhhhhhhhhhccccccc------HHHHHHHhcCccccceeeecCCCCC---HHHHHHHHHH
Confidence 79999999998754 222233333333333221 1122111111222222332211111 1111111100
Q ss_pred hchhHHHHHHhHh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 281 FDASLSKLQGSQL-NCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 281 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
+. +.+.++ ..+.+++.+-.. +.+. .-|...+.. ...+....+........++ ..
T Consensus 406 ~l-----MIRRlK~dvL~qLPpKrr~-----------Vv~~--~~gr~da~~--~~lv~~a~~~t~~~~~e~~-----~~ 460 (689)
T KOG1000|consen 406 RL-----MIRRLKADVLKQLPPKRRE-----------VVYV--SGGRIDARM--DDLVKAAADYTKVNSMERK-----HE 460 (689)
T ss_pred HH-----HHHHHHHHHHhhCCccceE-----------EEEE--cCCccchHH--HHHHHHhhhcchhhhhhhh-----hH
Confidence 00 000000 011111111000 0000 000000000 0000000000000000000 00
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHh---hCCCCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS---FGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~---~~~~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
-+...++. ..--|+....+.|.. +...+..+.+||+......+.|...+.+
T Consensus 461 ~l~l~y~~--------------------------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~ 514 (689)
T KOG1000|consen 461 SLLLFYSL--------------------------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNK 514 (689)
T ss_pred HHHHHHHH--------------------------hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHH
Confidence 00000000 012356666665544 2345667999999999999999998887
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC-ceE-EEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhh
Q 000379 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK-VNL-LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514 (1604)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~-~~i-LIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GR 514 (1604)
+++....+.|. .+...|....+.|...+ +.| +++-.+++.||++.+.++||...++||+--++|.-.|
T Consensus 515 ----r~vg~IRIDGs------t~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDR 584 (689)
T KOG1000|consen 515 ----RKVGSIRIDGS------TPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDR 584 (689)
T ss_pred ----cCCCeEEecCC------CCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhh
Confidence 56677778898 47788999999999764 554 4567788999999999999999999999999999999
Q ss_pred hcccCce----EEEEEeccCHHH
Q 000379 515 ARQHNSQ----FILMLERGNLKQ 533 (1604)
Q Consensus 515 A~R~gs~----~i~~v~~~~~~~ 533 (1604)
|+|.|++ .+.|+.+++.++
T Consensus 585 aHRiGQkssV~v~ylvAKgT~Dd 607 (689)
T KOG1000|consen 585 AHRIGQKSSVFVQYLVAKGTADD 607 (689)
T ss_pred hhhccccceeeEEEEEecCchHH
Confidence 9999986 556667776654
No 123
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=4.2e-19 Score=200.83 Aligned_cols=327 Identities=18% Similarity=0.263 Sum_probs=207.8
Q ss_pred CCCCcHHHHHHHHHhhc----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 43 NFIPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
...+||||...+.++.+ +..||++|.|+|||++.+-.+. .-++++|+||.+..-|+||...|..+..
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~---------tikK~clvLcts~VSVeQWkqQfk~wst 370 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC---------TIKKSCLVLCTSAVSVEQWKQQFKQWST 370 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee---------eecccEEEEecCccCHHHHHHHHHhhcc
Confidence 45689999999999975 7799999999999998876543 2456799999999999999999999875
Q ss_pred C---cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHh--------cCcCccceeEEEEeCcccccCCChHH
Q 000379 119 F---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK--------AFLSLDIVCFIVIDECHHATGNHPYT 187 (1604)
Q Consensus 119 ~---~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~--------~~~~l~~i~llI~DEaH~~~~~~~~~ 187 (1604)
+ .+..++.+.. +..-.++.|+|+||.++..--.+ .++.-..|.++|+||+|-.... -++
T Consensus 371 i~d~~i~rFTsd~K---------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~-MFR 440 (776)
T KOG1123|consen 371 IQDDQICRFTSDAK---------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK-MFR 440 (776)
T ss_pred cCccceEEeecccc---------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH-HHH
Confidence 4 4444544321 11234789999999877432111 2455578999999999988432 466
Q ss_pred HHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhh-hhccCCcceeeeeccCCCcc
Q 000379 188 KIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEM-EVFVPSAKESCRFYDQSKFC 266 (1604)
Q Consensus 188 ~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l-~~~~~~p~e~~~~y~~~~~~ 266 (1604)
+++.... .--.||||||.++.++ .|.+|.-+++++.|..+=.+.. ..|+.+-
T Consensus 441 RVlsiv~-----aHcKLGLTATLvREDd---------KI~DLNFLIGPKlYEAnWmdL~~kGhIA~V------------- 493 (776)
T KOG1123|consen 441 RVLSIVQ-----AHCKLGLTATLVREDD---------KITDLNFLIGPKLYEANWMDLQKKGHIAKV------------- 493 (776)
T ss_pred HHHHHHH-----HHhhccceeEEeeccc---------cccccceeecchhhhccHHHHHhCCceeEE-------------
Confidence 6555432 1235999999988653 3445554555444433211000 0000000
Q ss_pred ccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHH
Q 000379 267 GSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE 346 (1604)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~ 346 (1604)
+-...||....
T Consensus 494 -------------------------------------------------------qCaEVWCpMt~-------------- 504 (776)
T KOG1123|consen 494 -------------------------------------------------------QCAEVWCPMTP-------------- 504 (776)
T ss_pred -------------------------------------------------------eeeeeecCCCH--------------
Confidence 00112332110
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCC-HHHHHHHHHHHhhCCCCCcEEEEEEchHH
Q 000379 347 CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS-TKLHELLQLFLSFGKSTQVLCIIFVERII 425 (1604)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ 425 (1604)
....+|+.+-... .. -...++ .|++. .+.|-.|.+..+.++|||.....
T Consensus 505 --------eFy~eYL~~~t~k---------r~------------lLyvMNP~KFra-CqfLI~~HE~RgDKiIVFsDnvf 554 (776)
T KOG1123|consen 505 --------EFYREYLRENTRK---------RM------------LLYVMNPNKFRA-CQFLIKFHERRGDKIIVFSDNVF 554 (776)
T ss_pred --------HHHHHHHhhhhhh---------hh------------eeeecCcchhHH-HHHHHHHHHhcCCeEEEEeccHH
Confidence 0011111100000 00 000112 24433 34444444467789999999876
Q ss_pred HHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC-CceEEEEccccccccCCCCccEEEEcCC-CC
Q 000379 426 AAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG-KVNLLFATDVIEEGMHVPNCSYVIRFDL-PK 503 (1604)
Q Consensus 426 ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g-~~~iLIaT~vleeGIDip~~nlVI~fD~-p~ 503 (1604)
.....+-.|.+ -++.|. -++.+|..+++.|+.+ .+|-++-+.|+...||+|.+|++|+... -.
T Consensus 555 ALk~YAikl~K---------pfIYG~------Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G 619 (776)
T KOG1123|consen 555 ALKEYAIKLGK---------PFIYGP------TSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG 619 (776)
T ss_pred HHHHHHHHcCC---------ceEECC------CchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc
Confidence 65554433433 246676 4799999999999976 5999999999999999999999998774 45
Q ss_pred CHHHHHHHhhhhcccCce--------EEEEEecc
Q 000379 504 TVSSYIQSRGRARQHNSQ--------FILMLERG 529 (1604)
Q Consensus 504 s~~syiQr~GRA~R~gs~--------~i~~v~~~ 529 (1604)
|-++-.||.||.-|+... |+.+|..+
T Consensus 620 SRRQEAQRLGRILRAKk~~de~fnafFYSLVS~D 653 (776)
T KOG1123|consen 620 SRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKD 653 (776)
T ss_pred chHHHHHHHHHHHHHhhcCccccceeeeeeeecc
Confidence 788999999999886531 55566544
No 124
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.80 E-value=7.1e-18 Score=197.26 Aligned_cols=451 Identities=16% Similarity=0.235 Sum_probs=254.7
Q ss_pred CCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 42 INFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
...++.+||...+.++. +-|.|+++++|.|||..++.++.++.+...-++ -.|+++|...| ..|+++|.++
T Consensus 564 l~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwG---PFLVVtpaStL-~NWaqEisrF 639 (1185)
T KOG0388|consen 564 LKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWG---PFLVVTPASTL-HNWAQEISRF 639 (1185)
T ss_pred hhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCC---ceEEeehHHHH-hHHHHHHHHh
Confidence 35689999999999985 589999999999999999999999887333333 37999998666 7799999999
Q ss_pred c-CCcEEEEECCCCCC-----ccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCC--hHHH
Q 000379 117 T-DFEVEEYYGAKGVD-----EWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH--PYTK 188 (1604)
Q Consensus 117 ~-~~~v~~~~G~~~~~-----~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~--~~~~ 188 (1604)
+ .+++.-+.|+.+-. .|....--......+|+|+|||.++.. ..++.--.|.++|+|||+.+.... .|..
T Consensus 640 lP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtD--eky~qkvKWQYMILDEAQAIKSSsS~RWKt 717 (1185)
T KOG0388|consen 640 LPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTD--EKYLQKVKWQYMILDEAQAIKSSSSSRWKT 717 (1185)
T ss_pred CccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeech--HHHHHhhhhhheehhHHHHhhhhhhhHHHH
Confidence 8 48998899986533 233333233456789999999988533 123333468899999999987542 1222
Q ss_pred HHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeec-cchhhhhhccCCcceeeeeccCCCccc
Q 000379 189 IMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI-EDKTEMEVFVPSAKESCRFYDQSKFCG 267 (1604)
Q Consensus 189 im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~-~~~~~l~~~~~~p~e~~~~y~~~~~~~ 267 (1604)
++. | .+..+|+||+||+.+. +.+|+.+|+-..-+. ....++..+..+-.|....- .
T Consensus 718 LLs-F-----~cRNRLLLTGTPIQNs-----------MqELWALLHFIMPsLFDshneFseWFSKdIEshAe~------~ 774 (1185)
T KOG0388|consen 718 LLS-F-----KCRNRLLLTGTPIQNS-----------MQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEM------N 774 (1185)
T ss_pred Hhh-h-----hccceeeecCCccchH-----------HHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHh------c
Confidence 222 2 4567899999999864 567777665211000 12223333332222111100 0
Q ss_pred cch-hhhhhhhhhhhchhHHHH-HHhHhhhh---------hhhhhHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHH
Q 000379 268 SDL-KGKLEVSWSKFDASLSKL-QGSQLNCY---------KDMDDKHKTLRKQLSDYHAKIL--YCLDELGLICAYEAVK 334 (1604)
Q Consensus 268 ~~l-~~~~~~~~~~~~~~~~~l-~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~--~~~~~lG~~~~~~~~~ 334 (1604)
..+ .+.+.....-+.++|.+. .....+.+ -++...-+.+-+.+++....+. ..+-.+.-.|-..-.-
T Consensus 775 ~tlneqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHPdLF 854 (1185)
T KOG0388|consen 775 TTLNEQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHPDLF 854 (1185)
T ss_pred CCcCHHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCChHHH
Confidence 001 111111111112222211 11111111 1111111111111111111000 0111111111100000
Q ss_pred HHHHHh-------hhhHHHH-H------HHHHhhHHHH-----------HHHHHHHHHHhhhcCc---------------
Q 000379 335 ICLEKV-------LKAQEEC-E------IYRQSSLQCK-----------YFLEEVLHVIGSALPL--------------- 374 (1604)
Q Consensus 335 ~~~~~~-------~~~~~~~-~------~~~~~~~~~~-----------~~~~~~~~~l~~~~~~--------------- 374 (1604)
.-++.. .....+. . .|........ +++.++ +.+...+..
T Consensus 855 er~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~-~g~~~~v~Geg~~~w~~~l~~e~k 933 (1185)
T KOG0388|consen 855 ERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERI-NGLRRIVNGEGPNAWYLRLSLEFK 933 (1185)
T ss_pred hhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHH-hhhHhhhcCCCcchhcccceeeec
Confidence 000000 0000000 0 0000000000 000000 000000000
Q ss_pred -----------------------------cchhh-------------------------ccccCCcc------ccc----
Q 000379 375 -----------------------------ADKIF-------------------------LDFGFDYS------KAV---- 390 (1604)
Q Consensus 375 -----------------------------~~~~~-------------------------~~~~~~~~------~~~---- 390 (1604)
....+ +....+.. ..+
T Consensus 934 ~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~ 1013 (1185)
T KOG0388|consen 934 YGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNT 1013 (1185)
T ss_pred cCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCccccc
Confidence 00000 00000000 000
Q ss_pred --------ccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHH
Q 000379 391 --------DLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKV 462 (1604)
Q Consensus 391 --------~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~ 462 (1604)
..-..|.|+..|-++|.... ..+.|+++|.+-..+...+.++|.. .++....+.|. ....+
T Consensus 1014 ~i~~Ppm~~FitdSgKL~~LDeLL~kLk-aegHRvL~yfQMTkM~dl~EdYl~y----r~Y~ylRLDGS------sk~~d 1082 (1185)
T KOG0388|consen 1014 TIYVPPMNTFITDSGKLVVLDELLPKLK-AEGHRVLMYFQMTKMIDLIEDYLVY----RGYTYLRLDGS------SKASD 1082 (1185)
T ss_pred ceecCcHHhhhccccceeeHHHHHHHhh-cCCceEEehhHHHHHHHHHHHHHHh----hccceEEecCc------chhhH
Confidence 01123678888888887766 4568999999988888999998875 67888889998 57889
Q ss_pred HHHHHHHHhCCCc-eEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHH
Q 000379 463 QKEVLESFRGGKV-NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQ 533 (1604)
Q Consensus 463 r~~vl~~Fr~g~~-~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~ 533 (1604)
|.+++.+|...++ -+|++|.+++-|||+.+++.||.||..||+..-.|...||.|-|+. ++-++.+|+.++
T Consensus 1083 Rrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEE 1158 (1185)
T KOG0388|consen 1083 RRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEE 1158 (1185)
T ss_pred HHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHH
Confidence 9999999998764 4678999999999999999999999999999999999999999985 667777887764
No 125
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.77 E-value=3.8e-18 Score=190.10 Aligned_cols=160 Identities=23% Similarity=0.304 Sum_probs=129.4
Q ss_pred CCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---CCc
Q 000379 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---DFE 120 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---~~~ 120 (1604)
.|+++|.++++.+. ++|+++++|||+|||+++++++.+.+.... ...+++++|++|+++|+.|+.+.++.+. ++.
T Consensus 21 ~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~ 99 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-KKDGPQALILAPTRELALQIAEVARKLGKHTNLK 99 (203)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCce
Confidence 58999999999987 599999999999999998887766554211 1345679999999999999999988764 678
Q ss_pred EEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCC
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~ 199 (1604)
+..++|+.....+ .... .+++|+|+||+.|.+.+.++...+.+++++|+||||++.+ ..+...+..+......
T Consensus 100 ~~~~~~~~~~~~~-----~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~-~~~~~~~~~~~~~l~~ 173 (203)
T cd00268 100 VVVIYGGTSIDKQ-----IRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD-MGFEDQIREILKLLPK 173 (203)
T ss_pred EEEEECCCCHHHH-----HHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc-cChHHHHHHHHHhCCc
Confidence 8888887654332 2222 4789999999999999998888899999999999999874 3566666666666666
Q ss_pred CCcEEEEeccCC
Q 000379 200 KPKVFGMTASPV 211 (1604)
Q Consensus 200 ~p~iLgLTATP~ 211 (1604)
.++++++||||.
T Consensus 174 ~~~~~~~SAT~~ 185 (203)
T cd00268 174 DRQTLLFSATMP 185 (203)
T ss_pred ccEEEEEeccCC
Confidence 799999999986
No 126
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=99.77 E-value=6.7e-19 Score=196.02 Aligned_cols=123 Identities=33% Similarity=0.387 Sum_probs=108.0
Q ss_pred hHHHHHhhccCCCCC----CCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHHHHHHHhCCCcccc
Q 000379 1059 SSLILEALTTLGCCE----SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134 (1604)
Q Consensus 1059 ~~lll~AlT~~s~~~----~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i 1134 (1604)
..++-+|+|..+... ..+||||||||||||.+++|.++|.+||+.|||.||.+|+.+|||..-+++|..+|+++|+
T Consensus 289 irlla~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~lgf~e~l 368 (533)
T KOG1817|consen 289 IRLLARAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDLGFHEYL 368 (533)
T ss_pred HHHHHHHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHhCCchhh
Confidence 678999999988752 2479999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCCh
Q 000379 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL 1214 (1604)
Q Consensus 1135 ~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G~ 1214 (1604)
.... +.+. .+.+..|.+||++||.|||.|+|+|+
T Consensus 369 i~n~-~~k~---------------------------------------------~~~lk~K~~ADlfEAfiGaLyvD~~l 402 (533)
T KOG1817|consen 369 ITNF-DLKD---------------------------------------------FQNLKLKDYADLFEAFIGALYVDKGL 402 (533)
T ss_pred hhCc-chhh---------------------------------------------hhhhhHHHHHHHHHHHHHHHhhcCCc
Confidence 9762 1111 12367899999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 000379 1215 IAALYMMKWLGID 1227 (1604)
Q Consensus 1215 ~~a~~~~~~lg~~ 1227 (1604)
+.+.+|++.+-.+
T Consensus 403 e~~~qf~~~l~~P 415 (533)
T KOG1817|consen 403 EYCRQFLRVLFFP 415 (533)
T ss_pred HHHHHHHHHHhhH
Confidence 9999999887543
No 127
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.77 E-value=5.9e-18 Score=182.68 Aligned_cols=157 Identities=24% Similarity=0.362 Sum_probs=123.5
Q ss_pred cHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC---CcEE
Q 000379 47 RIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD---FEVE 122 (1604)
Q Consensus 47 r~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~---~~v~ 122 (1604)
+|+|.++++.+. ++++++.+|||+|||++++.++...+. .+...++++++|+++|++|+.+.++.++. +++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~----~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQ----EGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHH----TTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhc----cCCCceEEEEeecccccccccccccccccccccccc
Confidence 489999999887 588999999999999999998877664 22335799999999999999999998874 5888
Q ss_pred EEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc--CCC
Q 000379 123 EYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNK 200 (1604)
Q Consensus 123 ~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~--~~~ 200 (1604)
.++|+...+... ..|. ..+++|+|+||+.|.+.+.++...+.++++|||||+|++... .+...+..+.... ...
T Consensus 77 ~~~~~~~~~~~~-~~~~--~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~~~~~~~ 152 (169)
T PF00270_consen 77 LLHGGQSISEDQ-REVL--SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRRLKRFKN 152 (169)
T ss_dssp EESTTSCHHHHH-HHHH--HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHHSHTTTT
T ss_pred cccccccccccc-cccc--cccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHHhcCCCC
Confidence 888876533111 1111 347999999999999999987668888999999999999876 4444555444433 235
Q ss_pred CcEEEEeccCC
Q 000379 201 PKVFGMTASPV 211 (1604)
Q Consensus 201 p~iLgLTATP~ 211 (1604)
+++++|||||.
T Consensus 153 ~~~i~~SAT~~ 163 (169)
T PF00270_consen 153 IQIILLSATLP 163 (169)
T ss_dssp SEEEEEESSST
T ss_pred CcEEEEeeCCC
Confidence 88999999986
No 128
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=5.5e-17 Score=204.39 Aligned_cols=112 Identities=18% Similarity=0.218 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...+++-+.... ..+..+||||+++..++.|.++|.+ .+++...+||. +.++++..+.+.|+.|
T Consensus 427 ~~k~~av~~~i~~~~-~~g~PVLVgt~Sie~sE~ls~~L~~----~gi~h~vLnak------~~q~Ea~iia~Ag~~G-- 493 (896)
T PRK13104 427 ADKFQAIIEDVRECG-VRKQPVLVGTVSIEASEFLSQLLKK----ENIKHQVLNAK------FHEKEAQIIAEAGRPG-- 493 (896)
T ss_pred HHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHH----cCCCeEeecCC------CChHHHHHHHhCCCCC--
Confidence 468888877665543 3456799999999999999999998 58899999998 7899999999999999
Q ss_pred eEEEEccccccccCCCCc--------------------------------------cEEEEcCCCCCHHHHHHHhhhhcc
Q 000379 476 NLLFATDVIEEGMHVPNC--------------------------------------SYVIRFDLPKTVSSYIQSRGRARQ 517 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~~--------------------------------------nlVI~fD~p~s~~syiQr~GRA~R 517 (1604)
.|+|||+++++|+||.=- =+||--..+.|.+---|-+|||||
T Consensus 494 ~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGR 573 (896)
T PRK13104 494 AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGR 573 (896)
T ss_pred cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhcccccc
Confidence 599999999999998721 157777789999999999999999
Q ss_pred cCc
Q 000379 518 HNS 520 (1604)
Q Consensus 518 ~gs 520 (1604)
.|.
T Consensus 574 QGD 576 (896)
T PRK13104 574 QGD 576 (896)
T ss_pred CCC
Confidence 994
No 129
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=5.8e-17 Score=203.61 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...+.+.+.... ..+..+||||+++..++.|.+.|.+ .++....++|. +..+++..+.++++.|.
T Consensus 423 ~~K~~al~~~i~~~~-~~g~pvLI~t~si~~se~ls~~L~~----~gi~~~~Lna~------~~~~Ea~ii~~ag~~g~- 490 (796)
T PRK12906 423 DSKFNAVVKEIKERH-AKGQPVLVGTVAIESSERLSHLLDE----AGIPHAVLNAK------NHAKEAEIIMNAGQRGA- 490 (796)
T ss_pred HHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHH----CCCCeeEecCC------cHHHHHHHHHhcCCCce-
Confidence 468888888886553 3456899999999999999999998 47888999998 56777677777777775
Q ss_pred eEEEEccccccccCCC---Ccc-----EEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEecc
Q 000379 476 NLLFATDVIEEGMHVP---NCS-----YVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERG 529 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip---~~n-----lVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~ 529 (1604)
|+|||+++++|+||+ ++. +||+++.|.|.+.|.|++||+||.|.. ...++...
T Consensus 491 -VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 491 -VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred -EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 999999999999995 788 999999999999999999999999964 55555533
No 130
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.75 E-value=7.5e-16 Score=195.84 Aligned_cols=134 Identities=18% Similarity=0.316 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC
Q 000379 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474 (1604)
Q Consensus 395 ~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~ 474 (1604)
...++..|++.+..+. ..+.++||||+++..++.|.+.|... ++.+.++||. ++..+|.++++.|+.|+
T Consensus 424 ~~~qi~~Ll~eI~~~~-~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~------~~~~eR~~~l~~fr~G~ 492 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRV-ARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSE------IDTLERVEIIRDLRLGE 492 (655)
T ss_pred ccchHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCC------CCHHHHHHHHHHHhcCC
Confidence 3456777777776654 44679999999999999999999873 6889999998 89999999999999999
Q ss_pred ceEEEEccccccccCCCCccEEEEcC-----CCCCHHHHHHHhhhhcccCc-eEEEEEeccCHHHHHHHHH
Q 000379 475 VNLLFATDVIEEGMHVPNCSYVIRFD-----LPKTVSSYIQSRGRARQHNS-QFILMLERGNLKQRNKLFD 539 (1604)
Q Consensus 475 ~~iLIaT~vleeGIDip~~nlVI~fD-----~p~s~~syiQr~GRA~R~gs-~~i~~v~~~~~~~~~~l~~ 539 (1604)
+.|||||+++++|+|+|++++||++| .|.+..+|+||+|||||... +++++++..+......+.+
T Consensus 493 i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 493 FDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred ceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHHH
Confidence 99999999999999999999999998 79999999999999999864 4666666555444444444
No 131
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.75 E-value=5.2e-16 Score=189.79 Aligned_cols=186 Identities=19% Similarity=0.252 Sum_probs=133.4
Q ss_pred CCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc-
Q 000379 44 FIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT- 117 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~- 117 (1604)
-.+|.||...++|+. +-|.|+++++|.|||...|.++.++.=....+++ =||+|||..+ -.|.-+|++++
T Consensus 614 GqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGP---HLIVVpTsvi-LnWEMElKRwcP 689 (1958)
T KOG0391|consen 614 GQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGP---HLIVVPTSVI-LNWEMELKRWCP 689 (1958)
T ss_pred HHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCC---ceEEeechhh-hhhhHHHhhhCC
Confidence 468999999999984 4789999999999999999988887643333444 4999999555 56999999999
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCC--hHHHHHHHHHh
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH--PYTKIMKEFYH 195 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~--~~~~im~~~~~ 195 (1604)
++++..|+|...-..-.++.|.+ -+..+|.|++|+.++..+. .+.-.+|.++|+||||++++.. .|..++. |
T Consensus 690 glKILTYyGs~kErkeKRqgW~k-PnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnfksqrWQAlln-f-- 763 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAK-PNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNFKSQRWQALLN-F-- 763 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccC-CCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcchhHHHHHHHhc-c--
Confidence 79999999986544444555653 3467999999998876654 3455689999999999997642 2222221 1
Q ss_pred hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCcee-eccchhhhhhccCCc
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIEDKTEMEVFVPSA 253 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~-t~~~~~~l~~~~~~p 253 (1604)
+.-|+|+||+||..|+ +.+|+++|+--.- +..+...+..+..+|
T Consensus 764 ---nsqrRLLLtgTPLqNs-----------lmELWSLmhFLmP~~f~shd~fk~wfsnP 808 (1958)
T KOG0391|consen 764 ---NSQRRLLLTGTPLQNS-----------LMELWSLMHFLMPQTFASHDIFKPWFSNP 808 (1958)
T ss_pred ---chhheeeecCCchhhH-----------HHHHHHHHHHhhchhhhhhhhHHHHhcCc
Confidence 4468899999999764 5667766653111 113344455555554
No 132
>COG4889 Predicted helicase [General function prediction only]
Probab=99.75 E-value=8.4e-18 Score=200.57 Aligned_cols=167 Identities=23% Similarity=0.252 Sum_probs=114.5
Q ss_pred CCCCCCCCCcHHHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH
Q 000379 38 STNSINFIPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 38 ~~~~~~~~pr~yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
.+.....+|||||+++++.++. .+.=+.|..|+|||+.++-+...+.. .++|||||+.+|..|..++
T Consensus 154 l~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~--------~~iL~LvPSIsLLsQTlre 225 (1518)
T COG4889 154 LPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA--------ARILFLVPSISLLSQTLRE 225 (1518)
T ss_pred cccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh--------hheEeecchHHHHHHHHHH
Confidence 4445678899999999999973 45667788999999999887766532 5699999999999999888
Q ss_pred HHhhc--CCcEEEEECCCCCCcc---------------c----hhHHHHhc--CCCcEEEEcHHHHHHHHHhcCcCccce
Q 000379 113 IRVHT--DFEVEEYYGAKGVDEW---------------D----SQCWQKEI--NKNDVLVMTPQILLDALRKAFLSLDIV 169 (1604)
Q Consensus 113 i~~~~--~~~v~~~~G~~~~~~~---------------~----~~~w~~~~--~~~~ViV~T~q~Ll~~l~~~~~~l~~i 169 (1604)
..... +++...+|.+..+..- + .+.|...- .+--||++|||.+...-..-..-+..+
T Consensus 226 w~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~f 305 (1518)
T COG4889 226 WTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEF 305 (1518)
T ss_pred HhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCc
Confidence 87654 5666666665432210 0 01222222 345699999999976654444556889
Q ss_pred eEEEEeCcccccCCChHHHHHHHHHhhcC----CCCcEEEEeccCCC
Q 000379 170 CFIVIDECHHATGNHPYTKIMKEFYHKSD----NKPKVFGMTASPVV 212 (1604)
Q Consensus 170 ~llI~DEaH~~~~~~~~~~im~~~~~~~~----~~p~iLgLTATP~~ 212 (1604)
+|||.||||+..+-+--..--..|-..+. +..++|-|||||-.
T Consensus 306 DliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPki 352 (1518)
T COG4889 306 DLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKI 352 (1518)
T ss_pred cEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchh
Confidence 99999999999865322221122221111 23678899999964
No 133
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.74 E-value=2e-17 Score=183.96 Aligned_cols=310 Identities=19% Similarity=0.238 Sum_probs=194.3
Q ss_pred CCeEEEEEecChhhHHHHHHHHHh---hcC---CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcC
Q 000379 92 FKKLIIFLAPTVHLVHQQYDVIRV---HTD---FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165 (1604)
Q Consensus 92 ~~~~vl~LvPt~~Lv~Q~~~~i~~---~~~---~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~ 165 (1604)
..+.++|+-|+++|++|.++.|++ +++ ++...+.|+..... ......++.+|+|+||+++.+.+..|.+.
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~----Q~~ql~~g~~ivvGtpgRl~~~is~g~~~ 360 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRT----QCKQLKDGTHIVVGTPGRLLQPISKGLVT 360 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHH----HHHHhhcCceeeecCchhhhhhhhcccee
Confidence 345689999999999999985554 442 44446667654332 33445568999999999999999999999
Q ss_pred ccceeEEEEeCcccccCCChHHHHHHHHHhhc------CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceee
Q 000379 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKS------DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFT 239 (1604)
Q Consensus 166 l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~------~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t 239 (1604)
+.+..++|+||++-+.+. .|...+..|..+. ..+++....|||...-. -..-=|.+|+-....
T Consensus 361 lt~crFlvlDead~lL~q-gy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~fe----------Vkk~~ervmhfptwV 429 (725)
T KOG0349|consen 361 LTHCRFLVLDEADLLLGQ-GYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFE----------VKKVGERVMHFPTWV 429 (725)
T ss_pred eeeeEEEEecchhhhhhc-ccHHHHHHHhccchhhhcCCcccccceeeeEEeEEE----------eeehhhhhccCceeE
Confidence 999999999999999875 5666666555432 24577888888864211 001111222211100
Q ss_pred ccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 000379 240 IEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILY 319 (1604)
Q Consensus 240 ~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (1604)
... .... +.+.+...-...
T Consensus 430 -----------------dLk--geD~----vpetvHhvv~lv-------------------------------------- 448 (725)
T KOG0349|consen 430 -----------------DLK--GEDL----VPETVHHVVKLV-------------------------------------- 448 (725)
T ss_pred -----------------ecc--cccc----cchhhccceeec--------------------------------------
Confidence 000 0000 000000000000
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHH
Q 000379 320 CLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKL 399 (1604)
Q Consensus 320 ~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~ 399 (1604)
+-..-|.||..+ ++++ ... ... ...... ...+....+..+
T Consensus 449 ~p~~d~sw~~lr---------------------------~~i~-----td~-vh~-kdn~~p------g~~Spe~~s~a~ 488 (725)
T KOG0349|consen 449 CPSVDGSWCDLR---------------------------QFIE-----TDK-VHT-KDNLLP------GQVSPENPSSAT 488 (725)
T ss_pred CCccCccHHHHh---------------------------hhhc-----cCC-ccc-cccccc------ccCCCCChhhhh
Confidence 000012222110 0000 000 000 000000 000111112222
Q ss_pred HHH-----HHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC
Q 000379 400 HEL-----LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474 (1604)
Q Consensus 400 ~~L-----~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~ 474 (1604)
..| +..++.+ .-.++||||.++..++.|.+++.+..+ .++.|.++||+ ..+.+|++.++.|+.++
T Consensus 489 kilkgEy~v~ai~~h---~mdkaiifcrtk~dcDnLer~~~qkgg-~~~scvclhgD------rkP~Erk~nle~Fkk~d 558 (725)
T KOG0349|consen 489 KILKGEYGVVAIRRH---AMDKAIIFCRTKQDCDNLERMMNQKGG-KHYSCVCLHGD------RKPDERKANLESFKKFD 558 (725)
T ss_pred HHhcCchhhhhhhhh---ccCceEEEEeccccchHHHHHHHHcCC-ccceeEEEecC------CChhHHHHHHHhhhhcC
Confidence 221 1122222 335899999999999999999987532 56899999999 67899999999999999
Q ss_pred ceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEe
Q 000379 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLE 527 (1604)
Q Consensus 475 ~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~ 527 (1604)
.++||||+|+++||||...-.+|+..+|.....|+||+||+||+..- .|.++.
T Consensus 559 vkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 559 VKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred eEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEee
Confidence 99999999999999999999999999999999999999999998754 555554
No 134
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=2.2e-16 Score=199.21 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...+.+.+.... ..+..+||||+++..++.|.+.|.. .+++...+||. +.+|+..+.+|+.|..
T Consensus 413 ~~K~~aI~~~I~~~~-~~grpVLIft~Si~~se~Ls~~L~~----~gi~~~vLnak--------q~eREa~Iia~Ag~~g 479 (830)
T PRK12904 413 KEKFDAVVEDIKERH-KKGQPVLVGTVSIEKSELLSKLLKK----AGIPHNVLNAK--------NHEREAEIIAQAGRPG 479 (830)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH----CCCceEeccCc--------hHHHHHHHHHhcCCCc
Confidence 478888988886533 2345899999999999999999998 47888999986 6688999999999999
Q ss_pred eEEEEccccccccCCCCc--------------------------------------cEEEEcCCCCCHHHHHHHhhhhcc
Q 000379 476 NLLFATDVIEEGMHVPNC--------------------------------------SYVIRFDLPKTVSSYIQSRGRARQ 517 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~~--------------------------------------nlVI~fD~p~s~~syiQr~GRA~R 517 (1604)
.|+|||+++++|+||+=- =+||--..+.|.+---|-+|||||
T Consensus 480 ~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagR 559 (830)
T PRK12904 480 AVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGR 559 (830)
T ss_pred eEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhccccc
Confidence 999999999999999853 167777889999999999999999
Q ss_pred cCc
Q 000379 518 HNS 520 (1604)
Q Consensus 518 ~gs 520 (1604)
.|.
T Consensus 560 QGd 562 (830)
T PRK12904 560 QGD 562 (830)
T ss_pred CCC
Confidence 994
No 135
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=196.28 Aligned_cols=344 Identities=22% Similarity=0.288 Sum_probs=215.2
Q ss_pred CCCcHHHHHHHH--Hhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000379 44 FIPRIYQLKVFE--VAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 44 ~~pr~yQ~e~l~--~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--- 117 (1604)
.....||.+++. .++ ++|.|..+||+.|||++|-++++...- ..++.++++.|-++.+..-...+..+.
T Consensus 222 ~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l-----~~rr~~llilp~vsiv~Ek~~~l~~~~~~~ 296 (1008)
T KOG0950|consen 222 LKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVL-----CRRRNVLLILPYVSIVQEKISALSPFSIDL 296 (1008)
T ss_pred HHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHH-----HHhhceeEecceeehhHHHHhhhhhhcccc
Confidence 456788988875 333 499999999999999999887765432 134569999999998887777776653
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc--CcCccceeEEEEeCcccccCCChHH---HHHHH
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA--FLSLDIVCFIVIDECHHATGNHPYT---KIMKE 192 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~---~im~~ 192 (1604)
|+.|..++|...... .++.-.|.|||.+.-..++.+- .-.++.+.+||+||-|.+.+.+... .++..
T Consensus 297 G~~ve~y~g~~~p~~--------~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k 368 (1008)
T KOG0950|consen 297 GFPVEEYAGRFPPEK--------RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAK 368 (1008)
T ss_pred CCcchhhcccCCCCC--------cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHH
Confidence 889999998765543 3346789999998765444331 1245678899999999998664322 22222
Q ss_pred H-HhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchh-hhhhccCCcceeeeeccCCCccccch
Q 000379 193 F-YHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKT-EMEVFVPSAKESCRFYDQSKFCGSDL 270 (1604)
Q Consensus 193 ~-~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~-~l~~~~~~p~e~~~~y~~~~~~~~~l 270 (1604)
+ |.......+|+|||||..+ +..|+.++++.+|+...|. .+.+++ +|-. ..|+.
T Consensus 369 ~~y~~~~~~~~iIGMSATi~N-------------~~lL~~~L~A~~y~t~fRPv~L~E~i-k~G~--~i~~~-------- 424 (1008)
T KOG0950|consen 369 ILYENLETSVQIIGMSATIPN-------------NSLLQDWLDAFVYTTRFRPVPLKEYI-KPGS--LIYES-------- 424 (1008)
T ss_pred HHHhccccceeEeeeecccCC-------------hHHHHHHhhhhheecccCcccchhcc-CCCc--ccccc--------
Confidence 2 2233344789999999653 4788999998877765432 222222 1000 00000
Q ss_pred hhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 000379 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350 (1604)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1604)
. +.. .+.
T Consensus 425 -----------------------------~------r~~----------~lr---------------------------- 431 (1008)
T KOG0950|consen 425 -----------------------------S------RNK----------VLR---------------------------- 431 (1008)
T ss_pred -----------------------------h------hhH----------HHH----------------------------
Confidence 0 000 000
Q ss_pred HHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHH
Q 000379 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430 (1604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L 430 (1604)
++........... .-+.-+....+.+ ..+.++||||..|..++.+
T Consensus 432 ------------~ia~l~~~~~g~~------------------dpD~~v~L~tet~-----~e~~~~lvfc~sk~~ce~~ 476 (1008)
T KOG0950|consen 432 ------------EIANLYSSNLGDE------------------DPDHLVGLCTETA-----PEGSSVLVFCPSKKNCENV 476 (1008)
T ss_pred ------------HhhhhhhhhcccC------------------CCcceeeehhhhh-----hcCCeEEEEcCcccchHHH
Confidence 0000000000000 0000111111122 2234799999998877665
Q ss_pred HHHHhh-C-------------------------CC-CC-CeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEcc
Q 000379 431 ERFVKK-V-------------------------PF-LT-HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATD 482 (1604)
Q Consensus 431 ~~~L~~-~-------------------------~~-~~-~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~ 482 (1604)
+..+.. + |. +. .+.-..-.|...++.+++..+|+.+...||+|.+.|++||+
T Consensus 477 a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTS 556 (1008)
T KOG0950|consen 477 ASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATS 556 (1008)
T ss_pred HHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecc
Confidence 543321 1 10 00 01111112333344568999999999999999999999999
Q ss_pred ccccccCCCCccEEEEcCC----CCCHHHHHHHhhhhcccC----ceEEEEEeccCHH
Q 000379 483 VIEEGMHVPNCSYVIRFDL----PKTVSSYIQSRGRARQHN----SQFILMLERGNLK 532 (1604)
Q Consensus 483 vleeGIDip~~nlVI~fD~----p~s~~syiQr~GRA~R~g----s~~i~~v~~~~~~ 532 (1604)
.+.-|+|.|+-.++|++-. +.+...|.|++|||||.| ...++....++.+
T Consensus 557 TlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~ 614 (1008)
T KOG0950|consen 557 TLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKK 614 (1008)
T ss_pred hhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchh
Confidence 9999999999999998643 447889999999999998 2477777766554
No 136
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=4.9e-16 Score=183.48 Aligned_cols=448 Identities=17% Similarity=0.171 Sum_probs=239.4
Q ss_pred CCCCCCCCCCCcHHHHHHHHHhh------ccCEEEEeCCCChHHHHHHHHHHHHHHHHh---hCC-CCeEEEEEecChhh
Q 000379 36 SSSTNSINFIPRIYQLKVFEVAK------RRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNG-FKKLIIFLAPTVHL 105 (1604)
Q Consensus 36 ~~~~~~~~~~pr~yQ~e~l~~~l------~~n~Iv~~~TGsGKTliailli~~~~~~~~---~~~-~~~~vl~LvPt~~L 105 (1604)
...+....+.+-++|..++.++. ....|+.+++|.|||++.+.+|.+.-...+ ..+ ....+|||||- .|
T Consensus 316 te~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sl 394 (901)
T KOG4439|consen 316 TETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SL 394 (901)
T ss_pred cCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HH
Confidence 33445567788999999999986 267899999999999988887766432211 111 11248999997 89
Q ss_pred HHHHHHHHHhhc---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHH----HHHhc----CcCccceeEEEE
Q 000379 106 VHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD----ALRKA----FLSLDIVCFIVI 174 (1604)
Q Consensus 106 v~Q~~~~i~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~----~l~~~----~~~l~~i~llI~ 174 (1604)
+.||..++.+.. -++|..+||....+ .-.+.+..+||||+||....+ -+..+ .+.--.|+-||+
T Consensus 395 i~qW~~Ev~~rl~~n~LsV~~~HG~n~r~-----i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVIL 469 (901)
T KOG4439|consen 395 IHQWEAEVARRLEQNALSVYLYHGPNKRE-----ISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVIL 469 (901)
T ss_pred HHHHHHHHHHHHhhcceEEEEecCCcccc-----CCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhh
Confidence 999999999876 47888899876322 224566789999999998866 22111 111224678999
Q ss_pred eCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcc
Q 000379 175 DECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAK 254 (1604)
Q Consensus 175 DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~ 254 (1604)
||||.+.+........- . .-....+.+|||||+.++ ...+..|-..|...-|. +...-.+.+..+.
T Consensus 470 DEAH~IrN~~tq~S~AV--C--~L~a~~RWclTGTPiqNn--------~~DvysLlrFLr~~pF~--D~~~Wke~i~~~s 535 (901)
T KOG4439|consen 470 DEAHNIRNSNTQCSKAV--C--KLSAKSRWCLTGTPIQNN--------LWDVYSLLRFLRCPPFG--DLKQWKENIDNMS 535 (901)
T ss_pred hhhhhhcccchhHHHHH--H--HHhhcceeecccCccccc--------hhHHHHHHHHhcCCCcc--hHHHHHHhccCcc
Confidence 99999976533221110 0 012346799999999987 23455555555432221 1110000000000
Q ss_pred eeeeeccCCCccccchhhhhhhhhhhhchhHHHHH-HhHhh--hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000379 255 ESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQ-GSQLN--CYKDMDDK-HKTLRKQLSDYHAKILYCLDELGLICAY 330 (1604)
Q Consensus 255 e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~-~~~~~--~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~lG~~~~~ 330 (1604)
. .-...+. ... ...+.+.. .++.. ....++.+ +.-..-.+...-..+..++... +.
T Consensus 536 ~-------------~g~~rln-ll~--K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~a----sk 595 (901)
T KOG4439|consen 536 K-------------GGANRLN-LLT--KSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEA----SK 595 (901)
T ss_pred c-------------cchhhhh-hhh--hhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHH----HH
Confidence 0 0000000 000 00000000 00000 00001100 0000000111111111111110 01
Q ss_pred HHHHHHHHHhhhhHHHHHH---------------H----H-H----hhHHHHHHHHHHHHHHhhhcCcc-----------
Q 000379 331 EAVKICLEKVLKAQEECEI---------------Y----R-Q----SSLQCKYFLEEVLHVIGSALPLA----------- 375 (1604)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~---------------~----~-~----~~~~~~~~~~~~~~~l~~~~~~~----------- 375 (1604)
..++..+............ | . . ........+-..+-.+.+.+...
T Consensus 596 k~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~ 675 (901)
T KOG4439|consen 596 KLFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEE 675 (901)
T ss_pred HHHHHHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHH
Confidence 1122211111100000000 0 0 0 00000000000111111110000
Q ss_pred ----------------------chh-hccccCC---------cccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEch
Q 000379 376 ----------------------DKI-FLDFGFD---------YSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVER 423 (1604)
Q Consensus 376 ----------------------~~~-~~~~~~~---------~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~ 423 (1604)
... ......+ ..........|-|+...+++++........+++|..+-
T Consensus 676 ~~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQw 755 (901)
T KOG4439|consen 676 FQMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQW 755 (901)
T ss_pred hhhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHH
Confidence 000 0000000 01122334567888888888876644555677777666
Q ss_pred HHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhC--CCce-EEEEccccccccCCCCccEEEEcC
Q 000379 424 IIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRG--GKVN-LLFATDVIEEGMHVPNCSYVIRFD 500 (1604)
Q Consensus 424 r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~--g~~~-iLIaT~vleeGIDip~~nlVI~fD 500 (1604)
......+...|++ .++....++|. ...++|+++++.|.. |..+ .|++-...+.|||+-..|++|..|
T Consensus 756 tsvLniv~~hi~~----~g~~y~si~Gq------v~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvD 825 (901)
T KOG4439|consen 756 TSVLNIVRKHIQK----GGHIYTSITGQ------VLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVD 825 (901)
T ss_pred HHHHHHHHHHHhh----CCeeeeeecCc------cchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEe
Confidence 5555666666766 36778889998 789999999999964 3344 467888999999999999999999
Q ss_pred CCCCHHHHHHHhhhhcccCce----EEEEEeccCHHH
Q 000379 501 LPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQ 533 (1604)
Q Consensus 501 ~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~ 533 (1604)
+-||+.---|...|.-|.|++ .+-|+..|+.++
T Consensus 826 lHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEq 862 (901)
T KOG4439|consen 826 LHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQ 862 (901)
T ss_pred cccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHH
Confidence 999999999999999999987 233445666653
No 137
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.73 E-value=1e-17 Score=167.69 Aligned_cols=121 Identities=45% Similarity=0.683 Sum_probs=103.1
Q ss_pred CCcceeccCCCcCcccccCcEEEeccCCceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEee
Q 000379 891 GKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLK 970 (1604)
Q Consensus 891 ~~~~~~~~~~~~~~~~l~~~vV~~~~~~~~Y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~ 970 (1604)
..+.++++|+++..+.++|++|+++|++++|.|.+|. |++|.|+|+......+.||.+||+++||+.|.+++||||+++
T Consensus 15 ~~~~l~~~~~~~~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~ 93 (135)
T cd02844 15 ASDLLHLADGSFCACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGK 93 (135)
T ss_pred ccceeeeccCcccHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEe
Confidence 3567899999999999999999999999999999999 999999998542125689999999999999999999999999
Q ss_pred ccCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeCcccceeeccc
Q 000379 971 QSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVP 1018 (1604)
Q Consensus 971 ~~~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pel~~~~~ip 1018 (1604)
++++++|+|+++....+. .....+.+..++||||||.++++|
T Consensus 94 ~~~~~~NlL~~~~~~~~~------~~~~~~~~~~v~L~PELC~~~~~p 135 (135)
T cd02844 94 QIFNLHNLLHNRFEEKGE------SEEKEKDRYFVELPPELCSVIDLP 135 (135)
T ss_pred cccccceecccccccccc------cccccccceEEEeChHHhccccCC
Confidence 999999999997643321 012345567789999999999987
No 138
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.72 E-value=3.4e-16 Score=190.19 Aligned_cols=177 Identities=18% Similarity=0.249 Sum_probs=128.0
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC--
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF-- 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~-- 119 (1604)
.|.|-.||.+++...- ++..+|++||.+|||++....|...++ .....+|++++||++|++|....+...++.
T Consensus 509 dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLR----esD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 509 DFCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLR----ESDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred ccCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHh----hcCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 4899999999999885 477999999999999999999888776 345678999999999999998888765532
Q ss_pred --cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHh---cCcCccceeEEEEeCcccccCC---ChHHHHHH
Q 000379 120 --EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK---AFLSLDIVCFIVIDECHHATGN---HPYTKIMK 191 (1604)
Q Consensus 120 --~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~---~~~~l~~i~llI~DEaH~~~~~---~~~~~im~ 191 (1604)
+-..+.|....+. +...| +++|+|+-|+.+-..|.. ..-...++..+||||+|.+... +.+-+++.
T Consensus 585 ~~rg~sl~g~ltqEY-sinp~-----nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEY-SINPW-----NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred cccchhhHhhhhHHh-cCCch-----hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 2233344433221 11122 689999999999887765 3445688999999999998744 33333332
Q ss_pred HHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeecc
Q 000379 192 EFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE 241 (1604)
Q Consensus 192 ~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~ 241 (1604)
. ....+|+||||..+ +..+...+...++.++-.++...
T Consensus 659 l------i~CP~L~LSATigN------~~l~qkWlnq~~R~~sr~~eli~ 696 (1330)
T KOG0949|consen 659 L------IPCPFLVLSATIGN------PNLFQKWLNQRGRAMSRNAELID 696 (1330)
T ss_pred h------cCCCeeEEecccCC------HHHHHHHHHHHHhhcCCCeeeee
Confidence 1 35679999999653 33456666667776665555443
No 139
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.71 E-value=3.5e-17 Score=185.04 Aligned_cols=72 Identities=25% Similarity=0.348 Sum_probs=62.9
Q ss_pred cCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHH
Q 000379 1507 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1586 (1604)
Q Consensus 1507 ~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA 1586 (1604)
..|||+.|+||||++++..|+|+++++ +||.|. +.|+|.|.++ +...+.|.| +|||.||+.||
T Consensus 157 ~~~pk~~L~e~~~~~~~~~p~y~~~~~---------~g~~~~---~~f~~~v~i~----~~~~~~g~g-~skk~Ae~~AA 219 (229)
T PRK00102 157 VKDYKTRLQELLQGRGLPLPEYELVKE---------EGPAHD---KEFTVEVTVN----GKELGEGTG-SSKKEAEQAAA 219 (229)
T ss_pred cCCHHHHHHHHHHHcCCCCCceEEeec---------cCCCCC---ceEEEEEEEC----CEEEEEeee-CCHHHHHHHHH
Confidence 468999999999999999999999887 899998 8999888883 456677777 67999999999
Q ss_pred HHHHHHHHH
Q 000379 1587 LIMLHELER 1595 (1604)
Q Consensus 1587 ~~~l~~l~~ 1595 (1604)
+.||+.|+.
T Consensus 220 ~~Al~~l~~ 228 (229)
T PRK00102 220 KQALKKLKE 228 (229)
T ss_pred HHHHHHHhh
Confidence 999999864
No 140
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.71 E-value=8.7e-17 Score=176.15 Aligned_cols=153 Identities=25% Similarity=0.384 Sum_probs=108.8
Q ss_pred CCCcHHHHHHHHHhh--------ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 44 FIPRIYQLKVFEVAK--------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l--------~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
++||+||.+++..+. .+++++.+|||+|||.+++.++.++.. +++|+||+..|++||.+.+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---------~~l~~~p~~~l~~Q~~~~~~~ 72 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---------KVLIVAPNISLLEQWYDEFDD 72 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---------EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---------ceeEecCHHHHHHHHHHHHHH
Confidence 579999999999887 377999999999999999988777642 699999999999999999976
Q ss_pred hcCCcEEEEECCC----------CCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc-----------CcCccceeEEEE
Q 000379 116 HTDFEVEEYYGAK----------GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-----------FLSLDIVCFIVI 174 (1604)
Q Consensus 116 ~~~~~v~~~~G~~----------~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~-----------~~~l~~i~llI~ 174 (1604)
+..-......... ....+....-.......+++++|++.|....... .......++|||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 73 FGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp HSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 6543333221110 0001111112233467899999999998776532 123456789999
Q ss_pred eCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCC
Q 000379 175 DECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 175 DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~ 211 (1604)
|||||+.+...|..++. ...+.+|+|||||.
T Consensus 153 DEaH~~~~~~~~~~i~~------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 153 DEAHHYPSDSSYREIIE------FKAAFILGLTATPF 183 (184)
T ss_dssp ETGGCTHHHHHHHHHHH------SSCCEEEEEESS-S
T ss_pred ehhhhcCCHHHHHHHHc------CCCCeEEEEEeCcc
Confidence 99999987644777776 46788999999996
No 141
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.71 E-value=5.1e-16 Score=202.31 Aligned_cols=318 Identities=19% Similarity=0.175 Sum_probs=190.4
Q ss_pred CCCCCcHHHHHHHHHhhc----c-CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 42 INFIPRIYQLKVFEVAKR----R-NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~----~-n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
..-.++++|.++++.+.. . .+++.+|||+|||.+++.++.+..... .....+++++.|++++++++++.++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--~~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 192 IEHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--IKLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred cCchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--ccccceEEEEccHHHHHHHHHHHHHhh
Confidence 344569999999998863 5 788999999999999999887776522 225677999999999999999999987
Q ss_pred cCCcEEE---EECCCCCCccchhHH-----------HHhcCCCcEEEEcHHHHHHHHHhcCcC-c--cceeEEEEeCccc
Q 000379 117 TDFEVEE---YYGAKGVDEWDSQCW-----------QKEINKNDVLVMTPQILLDALRKAFLS-L--DIVCFIVIDECHH 179 (1604)
Q Consensus 117 ~~~~v~~---~~G~~~~~~~~~~~w-----------~~~~~~~~ViV~T~q~Ll~~l~~~~~~-l--~~i~llI~DEaH~ 179 (1604)
++..... .+|...........+ ....--+-++++|-+++.......... + -..+++||||+|.
T Consensus 270 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 270 FGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred hcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 6533222 234332211111100 000111233444444443111111111 1 1247999999999
Q ss_pred ccCCChHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeee
Q 000379 180 ATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF 259 (1604)
Q Consensus 180 ~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~ 259 (1604)
+.......-+............+++.||||+.. .....|...++......... .. .|.
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~-----------~~~~~l~~~~~~~~~~~~~~----~~--~~~----- 407 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPP-----------FLKEKLKKALGKGREVVENA----KF--CPK----- 407 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCH-----------HHHHHHHHHHhcccceeccc----cc--ccc-----
Confidence 966532233333333334456899999999752 11233333222110000000 00 000
Q ss_pred ccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000379 260 YDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339 (1604)
Q Consensus 260 y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~ 339 (1604)
.. +.+.
T Consensus 408 --------------~~-----------------------------------------------e~~~------------- 413 (733)
T COG1203 408 --------------ED-----------------------------------------------EPGL------------- 413 (733)
T ss_pred --------------cc-----------------------------------------------cccc-------------
Confidence 00 0000
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHH-HHHhhCCCCCcEEE
Q 000379 340 VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQ-LFLSFGKSTQVLCI 418 (1604)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~-lL~~~~~~~~~~~I 418 (1604)
......+... .+. ..+.. +.... +.+.+++
T Consensus 414 -----------------~~~~~~~~~~-----------------------------~~~-~~~~~~~~~~~--~~~~kvl 444 (733)
T COG1203 414 -----------------KRKERVDVED-----------------------------GPQ-EELIELISEEV--KEGKKVL 444 (733)
T ss_pred -----------------ccccchhhhh-----------------------------hhh-Hhhhhcchhhh--ccCCcEE
Confidence 0000000000 000 01111 11222 3456899
Q ss_pred EEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHH----hCCCceEEEEccccccccCCCCcc
Q 000379 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESF----RGGKVNLLFATDVIEEGMHVPNCS 494 (1604)
Q Consensus 419 IFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~F----r~g~~~iLIaT~vleeGIDip~~n 494 (1604)
|-||++..|..+++.|+... ..+..+||. +..++|.+.++.+ ..+...|+|||+|.|.|+|+- ++
T Consensus 445 vI~NTV~~Aie~Y~~Lk~~~----~~v~LlHSR------f~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd 513 (733)
T COG1203 445 VIVNTVDRAIELYEKLKEKG----PKVLLLHSR------FTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FD 513 (733)
T ss_pred EEEecHHHHHHHHHHHHhcC----CCEEEEecc------cchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cC
Confidence 99999999999999999842 278899999 8888888877754 456789999999999999994 78
Q ss_pred EEEEcCCCCCHHHHHHHhhhhcccC
Q 000379 495 YVIRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 495 lVI~fD~p~s~~syiQr~GRA~R~g 519 (1604)
++|. -+..+.+.|||.||+.|.|
T Consensus 514 ~mIT--e~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 514 VLIT--ELAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred eeee--cCCCHHHHHHHHHHHhhcc
Confidence 7776 7788999999999999998
No 142
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.69 E-value=1.5e-15 Score=193.19 Aligned_cols=314 Identities=20% Similarity=0.246 Sum_probs=213.5
Q ss_pred CCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEE
Q 000379 44 FIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVE 122 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~ 122 (1604)
+--..+..+++..+.+ +-+||+++||||||..--..+.+... +.++.+.++-|.+--+...++.+...++.+++
T Consensus 49 LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 49 LPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 3345666677777765 55789999999999876666555432 45567999999998888899999988887776
Q ss_pred EEECCCCCCccchhHHHH-hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChH-HHHHHHHHhhcCCC
Q 000379 123 EYYGAKGVDEWDSQCWQK-EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPY-TKIMKEFYHKSDNK 200 (1604)
Q Consensus 123 ~~~G~~~~~~~~~~~w~~-~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~-~~im~~~~~~~~~~ 200 (1604)
..+|=.- +|+. .-....|-+||.++|+..+..... ++.+++|||||+|+-.-+..+ -..++.........
T Consensus 124 ~~VGY~i-------Rfe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~D 195 (845)
T COG1643 124 ETVGYSI-------RFESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDD 195 (845)
T ss_pred ceeeEEE-------EeeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCC
Confidence 6665210 1111 123679999999999999987764 889999999999997643222 12222222223334
Q ss_pred CcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcC-CceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 201 PKVFGMTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 201 p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
-++|.||||.. -..+.+.++ +.++.+..|.- | +.+.|.+.....
T Consensus 196 LKiIimSATld--------------~~rfs~~f~~apvi~i~GR~f-------P--Vei~Y~~~~~~d------------ 240 (845)
T COG1643 196 LKLIIMSATLD--------------AERFSAYFGNAPVIEIEGRTY-------P--VEIRYLPEAEAD------------ 240 (845)
T ss_pred ceEEEEecccC--------------HHHHHHHcCCCCEEEecCCcc-------c--eEEEecCCCCcc------------
Confidence 69999999964 245666666 56665544321 1 222332111000
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
+ .
T Consensus 241 ----------------~-----~--------------------------------------------------------- 242 (845)
T COG1643 241 ----------------Y-----I--------------------------------------------------------- 242 (845)
T ss_pred ----------------h-----h---------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCC
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~ 439 (1604)
-...+...+........+.++||..-....+...+.|.+ ..
T Consensus 243 --------------------------------------l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~-~~ 283 (845)
T COG1643 243 --------------------------------------LLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEK-AE 283 (845)
T ss_pred --------------------------------------HHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHh-cc
Confidence 000011111111112345789999999888888888876 22
Q ss_pred C-CCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEE--------cCC---------
Q 000379 440 L-THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR--------FDL--------- 501 (1604)
Q Consensus 440 ~-~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~--------fD~--------- 501 (1604)
+ ..+.+..++|. |+.++|..+++--..|.-+|++||+++|.+|-||++.+||. ||.
T Consensus 284 l~~~~~i~PLy~~------L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~ 357 (845)
T COG1643 284 LGDDLEILPLYGA------LSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLET 357 (845)
T ss_pred ccCCcEEeecccc------CCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeE
Confidence 3 46788889999 99999999998887887779999999999999999999994 553
Q ss_pred -CCCHHHHHHHhhhhcccCc-eEEEEEec
Q 000379 502 -PKTVSSYIQSRGRARQHNS-QFILMLER 528 (1604)
Q Consensus 502 -p~s~~syiQr~GRA~R~gs-~~i~~v~~ 528 (1604)
|-|-.+..||.|||||-+. .+|-++.+
T Consensus 358 ~~ISqAsA~QRaGRAGR~~pGicyRLyse 386 (845)
T COG1643 358 EPISKASADQRAGRAGRTGPGICYRLYSE 386 (845)
T ss_pred EEechhhhhhhccccccCCCceEEEecCH
Confidence 3477889999999999885 47777653
No 143
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.68 E-value=6.7e-17 Score=181.78 Aligned_cols=70 Identities=21% Similarity=0.327 Sum_probs=61.1
Q ss_pred cCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHH
Q 000379 1507 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1586 (1604)
Q Consensus 1507 ~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA 1586 (1604)
..|||+.|+||||++++..|.|+++.+ .|++|. +.|+|+|.++ +...+.|.| +|||.||+.||
T Consensus 151 ~~~pk~~L~e~~~~~~~~~p~y~~~~~---------~g~~~~---~~f~~~v~~~----~~~~~~g~g-~skk~A~~~AA 213 (220)
T TIGR02191 151 LKDYKTALQEWAQARGKPLPEYRLIKE---------EGPDHD---KEFTVEVSVN----GEPYGEGKG-KSKKEAEQNAA 213 (220)
T ss_pred cCChHHHHHHHHHHcCCCCceEEEecc---------cCCCCC---ceEEEEEEEC----CEEEEEeee-CCHHHHHHHHH
Confidence 478999999999999999999999877 799998 8999888873 456677777 67999999999
Q ss_pred HHHHHHH
Q 000379 1587 LIMLHEL 1593 (1604)
Q Consensus 1587 ~~~l~~l 1593 (1604)
+.||+.|
T Consensus 214 ~~Al~~l 220 (220)
T TIGR02191 214 KAALEKL 220 (220)
T ss_pred HHHHHhC
Confidence 9999864
No 144
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.67 E-value=5.2e-15 Score=185.50 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=122.6
Q ss_pred CCCCcHHHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 43 NFIPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
...+.+-|..+++.+.+ ...++.+.||||||-+++-+|...+. .++.+|||||-.+|-.|..+.|+..+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~------~GkqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA------QGKQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH------cCCEEEEEeccccchHHHHHHHHHHh
Confidence 45678899999998864 45799999999999999999999887 55779999999999999999999999
Q ss_pred CCcEEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC---Ch-H-HHHHH
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN---HP-Y-TKIMK 191 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~---~~-~-~~im~ 191 (1604)
+.++.+++++.+... ..+.|.+.. +..+|+|+|-..+ |..+.++.|||+||=|...=. .| | ++.+.
T Consensus 270 g~~v~vlHS~Ls~~e-r~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA 341 (730)
T COG1198 270 GAKVAVLHSGLSPGE-RYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA 341 (730)
T ss_pred CCChhhhcccCChHH-HHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHHHH
Confidence 999999999887654 566798887 6799999997766 778899999999999987511 11 1 22222
Q ss_pred HHHhhcCCCCcEEEEeccCC
Q 000379 192 EFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 192 ~~~~~~~~~p~iLgLTATP~ 211 (1604)
.+ ........+++=||||.
T Consensus 342 ~~-Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 342 VL-RAKKENAPVVLGSATPS 360 (730)
T ss_pred HH-HHHHhCCCEEEecCCCC
Confidence 22 22234456777799985
No 145
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.66 E-value=4.5e-14 Score=181.52 Aligned_cols=123 Identities=20% Similarity=0.333 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..++..|++.|..+. ..+.++||||+++..++.|.+.|.. .++.+.++||. ++..+|..+++.|+.|++
T Consensus 429 ~~q~~~L~~~L~~~~-~~g~~viIf~~t~~~ae~L~~~L~~----~gi~~~~~h~~------~~~~~R~~~l~~f~~g~i 497 (652)
T PRK05298 429 KGQVDDLLSEIRKRV-AKGERVLVTTLTKRMAEDLTDYLKE----LGIKVRYLHSD------IDTLERVEIIRDLRLGEF 497 (652)
T ss_pred cccHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHhh----cceeEEEEECC------CCHHHHHHHHHHHHcCCc
Confidence 345667777776654 3467999999999999999999987 47889999998 899999999999999999
Q ss_pred eEEEEccccccccCCCCccEEEEcCC-----CCCHHHHHHHhhhhcccCc-eEEEEEecc
Q 000379 476 NLLFATDVIEEGMHVPNCSYVIRFDL-----PKTVSSYIQSRGRARQHNS-QFILMLERG 529 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~~nlVI~fD~-----p~s~~syiQr~GRA~R~gs-~~i~~v~~~ 529 (1604)
+|||||+++++|+|+|++++||++|. |.+..+|+||+||+||... +++++++..
T Consensus 498 ~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~ 557 (652)
T PRK05298 498 DVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKI 557 (652)
T ss_pred eEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEecCC
Confidence 99999999999999999999999885 7899999999999999753 466666643
No 146
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.66 E-value=2.5e-14 Score=195.99 Aligned_cols=446 Identities=16% Similarity=0.161 Sum_probs=242.3
Q ss_pred CCCCCCcHHHHHHHHHhh------ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 41 SINFIPRIYQLKVFEVAK------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l------~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
....++|+||.+.+.++. ..+.|+++++|.|||+.++..+.+..... ....+.++++||+ +++.+|.+++.
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~--~~~~~~~liv~p~-s~~~nw~~e~~ 410 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESI--KVYLGPALIVVPA-SLLSNWKREFE 410 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcc--cCCCCCeEEEecH-HHHHHHHHHHh
Confidence 344678999999998865 37899999999999999999887644311 1113458999998 88899999998
Q ss_pred hhc-CCc-EEEEECCCCCCccchhHHHHhcCC-----CcEEEEcHHHHHHH-HHhcCcCccceeEEEEeCcccccCCCh-
Q 000379 115 VHT-DFE-VEEYYGAKGVDEWDSQCWQKEINK-----NDVLVMTPQILLDA-LRKAFLSLDIVCFIVIDECHHATGNHP- 185 (1604)
Q Consensus 115 ~~~-~~~-v~~~~G~~~~~~~~~~~w~~~~~~-----~~ViV~T~q~Ll~~-l~~~~~~l~~i~llI~DEaH~~~~~~~- 185 (1604)
++. .++ +..++|.........+.....+.. .+|+++|++.+... ..++.+.-..++.+|+||+|.+.+...
T Consensus 411 k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~ 490 (866)
T COG0553 411 KFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSS 490 (866)
T ss_pred hhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhH
Confidence 887 456 777888664201111222222322 79999999999773 234455667789999999999765422
Q ss_pred HHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeecc----chhhhhhccCCcceeeeecc
Q 000379 186 YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE----DKTEMEVFVPSAKESCRFYD 261 (1604)
Q Consensus 186 ~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~----~~~~l~~~~~~p~e~~~~y~ 261 (1604)
-...+..+ .....+.||+||+. +.+.+|.++++. +..+. ....+......|........
T Consensus 491 ~~~~l~~~-----~~~~~~~LtgTPle-----------n~l~eL~sl~~~-f~~p~~~~~~~~~f~~~~~~~~~~~~~~~ 553 (866)
T COG0553 491 EGKALQFL-----KALNRLDLTGTPLE-----------NRLGELWSLLQE-FLNPGLLGTSFAIFTRLFEKPIQAEEDIG 553 (866)
T ss_pred HHHHHHHH-----hhcceeeCCCChHh-----------hhHHHHHHHHHH-HhCCccccchHHHHHHHHhhhhhhccccc
Confidence 12222222 34456999999964 346677776663 11221 12233333333322221111
Q ss_pred CCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 000379 262 QSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLR-KQLSDYHAKILYCLDELGLICAYEAVKICLEKV 340 (1604)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~ 340 (1604)
+ .... ...+......+.+++.+...........++.+.+... ..+......+........ ......+
T Consensus 554 ~---~~~~-~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~--------~~~~~~~ 621 (866)
T COG0553 554 P---LEAR-ELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGA--------EKNQQLL 621 (866)
T ss_pred c---hhhH-HHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHH--------HHHHHHH
Confidence 1 0000 0000000000111100000000001111111111110 000000000000000000 0000000
Q ss_pred hhhHHHHHHH-HHhhHHHHHHHHHHHHHHhhhcCccchhhccc---cCC------------cccccccCCCC-HHHHHHH
Q 000379 341 LKAQEECEIY-RQSSLQCKYFLEEVLHVIGSALPLADKIFLDF---GFD------------YSKAVDLGYIS-TKLHELL 403 (1604)
Q Consensus 341 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~------------~~~~~~~~~~s-~K~~~L~ 403 (1604)
.......... .... .... +......+...+..... +... ..+ ..........+ .|...+.
T Consensus 622 ~~~~~~~~~~~~~~~-~~~~-~l~~~~~lr~~~~~p~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~ 698 (866)
T COG0553 622 EDLEKADSDENRIGD-SELN-ILALLTRLRQICNHPAL-VDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALD 698 (866)
T ss_pred HHHHhhccccccccc-hhhH-HHHHHHHHHHhccCccc-cccccccccchhhhhhhcccccccccchhhhccchHHHHHH
Confidence 0000000000 0000 0000 00000111111100000 0000 000 00000011224 7888888
Q ss_pred HHH-HhhCCCCCc--EEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC--CceEE
Q 000379 404 QLF-LSFGKSTQV--LCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG--KVNLL 478 (1604)
Q Consensus 404 ~lL-~~~~~~~~~--~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g--~~~iL 478 (1604)
++| ..... ... +++||++...+...+...+... ++....++|. ++.+.|...+++|.++ ..-++
T Consensus 699 ~ll~~~~~~-~~~~~kvlifsq~t~~l~il~~~l~~~----~~~~~~ldG~------~~~~~r~~~i~~f~~~~~~~v~l 767 (866)
T COG0553 699 ELLLDKLLE-EGHYHKVLIFSQFTPVLDLLEDYLKAL----GIKYVRLDGS------TPAKRRQELIDRFNADEEEKVFL 767 (866)
T ss_pred HHHHHHHHh-hcccccEEEEeCcHHHHHHHHHHHHhc----CCcEEEEeCC------CChhhHHHHHHHhhcCCCCceEE
Confidence 888 44432 334 8999999999999999999884 4678889998 6789999999999996 34566
Q ss_pred EEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHH
Q 000379 479 FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLK 532 (1604)
Q Consensus 479 IaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~ 532 (1604)
++|.+++.|+|+..++.||.||+.||+....|...||.|.|++ ++-|+..+..+
T Consensus 768 ls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiE 825 (866)
T COG0553 768 LSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIE 825 (866)
T ss_pred EEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHH
Confidence 7889999999999999999999999999999999999999986 55566666654
No 147
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.66 E-value=1.1e-16 Score=152.47 Aligned_cols=80 Identities=28% Similarity=0.460 Sum_probs=74.7
Q ss_pred CcCcccccCcEEEeccCC----ceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEeeccCCcc
Q 000379 901 SVDAKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPH 976 (1604)
Q Consensus 901 ~~~~~~l~~~vV~~~~~~----~~Y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~~~ 976 (1604)
.++++.+.|++|+++|+| ++|+|.+|++||+|.|+|+.. ++.||.+||++|||+.|.+.+||||+|+.++.++
T Consensus 35 ~f~~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~---~~~Ty~eYyk~KY~I~I~~~~QPLL~v~~~s~~l 111 (122)
T cd02843 35 KFDAEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP---EYETFEEYYKKKYKLDIQNLNQPLLDVDHTSTRL 111 (122)
T ss_pred CCCHHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC---CCccHHHHHHHhcCeEeccCCCCcEeecCccccc
Confidence 467889999999999998 799999999999999999854 4899999999999999999999999999999999
Q ss_pred ccccccC
Q 000379 977 NLLVNFN 983 (1604)
Q Consensus 977 n~l~~~~ 983 (1604)
|||+|+.
T Consensus 112 Nll~pr~ 118 (122)
T cd02843 112 NLLTPRY 118 (122)
T ss_pred cccCccc
Confidence 9999864
No 148
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.65 E-value=3.2e-14 Score=164.48 Aligned_cols=105 Identities=20% Similarity=0.366 Sum_probs=94.9
Q ss_pred CCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCC
Q 000379 413 TQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPN 492 (1604)
Q Consensus 413 ~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~ 492 (1604)
.+.|++|-+=++.+|+.|.++|.. .++++.++|+. ...-+|.+++.+.|.|++.|||.-+.+-||||+|.
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e----~gikv~YlHSd------idTlER~eIirdLR~G~~DvLVGINLLREGLDiPE 514 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKE----LGIKVRYLHSD------IDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPE 514 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHh----cCceEEeeecc------chHHHHHHHHHHHhcCCccEEEeehhhhccCCCcc
Confidence 346999999999999999999998 48999999998 78999999999999999999999999999999999
Q ss_pred ccEEEEcCC-----CCCHHHHHHHhhhhcccCceEEEEEe
Q 000379 493 CSYVIRFDL-----PKTVSSYIQSRGRARQHNSQFILMLE 527 (1604)
Q Consensus 493 ~nlVI~fD~-----p~s~~syiQr~GRA~R~gs~~i~~v~ 527 (1604)
|.+|..+|. ..|-+++||-+|||.|.-..-++|+.
T Consensus 515 VsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYA 554 (663)
T COG0556 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYA 554 (663)
T ss_pred eeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEc
Confidence 999999984 56999999999999997655445543
No 149
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=5.3e-15 Score=185.94 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|..++++-+.... ..+..+||||+++..++.|.++|.. .++....+++. +..+++..+.+.|+.|.
T Consensus 432 ~~K~~Aii~ei~~~~-~~GrpVLV~t~sv~~se~ls~~L~~----~gi~~~vLnak------~~~~Ea~ii~~Ag~~G~- 499 (908)
T PRK13107 432 DEKYQAIIKDIKDCR-ERGQPVLVGTVSIEQSELLARLMVK----EKIPHEVLNAK------FHEREAEIVAQAGRTGA- 499 (908)
T ss_pred HHHHHHHHHHHHHHH-HcCCCEEEEeCcHHHHHHHHHHHHH----CCCCeEeccCc------ccHHHHHHHHhCCCCCc-
Confidence 578888777665544 3456899999999999999999998 47888999998 68999999999999998
Q ss_pred eEEEEccccccccCCCCc-------------------------------------cEEEEcCCCCCHHHHHHHhhhhccc
Q 000379 476 NLLFATDVIEEGMHVPNC-------------------------------------SYVIRFDLPKTVSSYIQSRGRARQH 518 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~~-------------------------------------nlVI~fD~p~s~~syiQr~GRA~R~ 518 (1604)
|+|||+++++|+||.=- =+||--..+.|.+---|-+|||||.
T Consensus 500 -VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQ 578 (908)
T PRK13107 500 -VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQ 578 (908)
T ss_pred -EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccC
Confidence 99999999999999721 1688888999999999999999999
Q ss_pred Cc
Q 000379 519 NS 520 (1604)
Q Consensus 519 gs 520 (1604)
|.
T Consensus 579 GD 580 (908)
T PRK13107 579 GD 580 (908)
T ss_pred CC
Confidence 94
No 150
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.63 E-value=3.3e-14 Score=179.70 Aligned_cols=339 Identities=19% Similarity=0.195 Sum_probs=207.6
Q ss_pred CcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc----CCc
Q 000379 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT----DFE 120 (1604)
Q Consensus 46 pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~----~~~ 120 (1604)
...++.+.++.+.+ +.++|.++||+|||...-..|.+... ..++..++++--|.+--+.-.++.+...- |-.
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~---~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~ 250 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAI---ESGAACNIICTQPRRISAISVAERVAKERGESLGEE 250 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHH---hcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCe
Confidence 45567777777764 66789999999999988887776543 23366678999999887777777776543 322
Q ss_pred EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCC
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK 200 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~ 200 (1604)
|+--.+-.+ .......+++||.++|++.+.. .-.+..+..||+||+|.-.-++.+-.+...-+....+.
T Consensus 251 VGYqvrl~~----------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~ 319 (924)
T KOG0920|consen 251 VGYQVRLES----------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPD 319 (924)
T ss_pred eeEEEeeec----------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCC
Confidence 222111111 1223578999999999999887 45678899999999999877666655544333333466
Q ss_pred CcEEEEeccCCCCCCCCCcccHHHHHHHHHhhc-CCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 201 PKVFGMTASPVVRKGVSSAMDCEGQISELESTL-DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 201 p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l-~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
-++++||||... ..+...+ ++.+.++..+ .|....+
T Consensus 320 LkvILMSAT~da--------------e~fs~YF~~~pvi~i~gr---------------tfpV~~~-------------- 356 (924)
T KOG0920|consen 320 LKVILMSATLDA--------------ELFSDYFGGCPVITIPGR---------------TFPVKEY-------------- 356 (924)
T ss_pred ceEEEeeeecch--------------HHHHHHhCCCceEeecCC---------------CcchHHH--------------
Confidence 799999999531 1222222 2222222111 0000000
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
T Consensus 357 -------------------------------------------------------------------------------- 356 (924)
T KOG0920|consen 357 -------------------------------------------------------------------------------- 356 (924)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcc--cccccCCCCHHHHHHHHHHHhhCC-CCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYS--KAVDLGYISTKLHELLQLFLSFGK-STQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~K~~~L~~lL~~~~~-~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
|+++++..+.......... .....+.. ..+......-....+.+++..... ...+.+|||-........+.+.|..
T Consensus 357 fLEDil~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~ 435 (924)
T KOG0920|consen 357 FLEDILSKTGYVSEDDSAR-SGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEV 435 (924)
T ss_pred HHHHHHHHhcccccccccc-cccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhh
Confidence 0000000000000000000 00000000 000000000112222333332221 3356899999999999999998876
Q ss_pred CCCCCC---eeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEE--------EcCCCCCH
Q 000379 437 VPFLTH---LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI--------RFDLPKTV 505 (1604)
Q Consensus 437 ~~~~~~---~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI--------~fD~p~s~ 505 (1604)
...+.+ +.+..+|+. |+..+|+.++++--.|..+|++||+++|..|-|++|-+|| +||+-.+.
T Consensus 436 ~~~f~~~~~~~ilplHs~------~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~ 509 (924)
T KOG0920|consen 436 NLPFADSLKFAILPLHSS------IPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKV 509 (924)
T ss_pred ccccccccceEEEecccc------CChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCc
Confidence 543333 667778888 9999999999999999999999999999999999999999 47765543
Q ss_pred ----------HHHHHHhhhhcccCc-eEEEEEec
Q 000379 506 ----------SSYIQSRGRARQHNS-QFILMLER 528 (1604)
Q Consensus 506 ----------~syiQr~GRA~R~gs-~~i~~v~~ 528 (1604)
..-.||+|||||--. .++.++..
T Consensus 510 s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~ 543 (924)
T KOG0920|consen 510 SCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTR 543 (924)
T ss_pred chhheeeccccchHHhcccccCccCCeeEEeech
Confidence 344799999999765 46666653
No 151
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.61 E-value=8.2e-15 Score=162.42 Aligned_cols=161 Identities=25% Similarity=0.335 Sum_probs=125.9
Q ss_pred CCCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC-
Q 000379 43 NFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF- 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~- 119 (1604)
..+++++|.+++..+.. +++++.++||+|||.+++.++.+.+. ....+++++++|+..++.||.+.+...+..
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~----~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALK----RGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhc----ccCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 46799999999999986 79999999999999988888777664 222467999999999999999999987732
Q ss_pred --cEEEEECCCCCCccchhHHHHhcCCC-cEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhh
Q 000379 120 --EVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 120 --~v~~~~G~~~~~~~~~~~w~~~~~~~-~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
....+.++... ...|....... +|+++|++.+.+.+........+++++|+||||++... .+...+..++..
T Consensus 82 ~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~ 156 (201)
T smart00487 82 GLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKL 156 (201)
T ss_pred CeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHh
Confidence 22333333221 23455555555 99999999999999887777888999999999999763 455666666665
Q ss_pred cCCCCcEEEEeccCCC
Q 000379 197 SDNKPKVFGMTASPVV 212 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~ 212 (1604)
....+++++|||||..
T Consensus 157 ~~~~~~~v~~saT~~~ 172 (201)
T smart00487 157 LPKNVQLLLLSATPPE 172 (201)
T ss_pred CCccceEEEEecCCch
Confidence 5677999999999963
No 152
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=2.9e-13 Score=170.52 Aligned_cols=125 Identities=19% Similarity=0.236 Sum_probs=101.6
Q ss_pred CcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh---hcCCcE
Q 000379 46 PRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---HTDFEV 121 (1604)
Q Consensus 46 pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---~~~~~v 121 (1604)
.+|||.+++..+. ++++|+.++||+|||+++++++...+. .+ +.+++|+||+.|+.|.++.+.. ++++++
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL----~g--~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV 166 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNAL----TG--KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTT 166 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHh----hc--CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 5999999998876 689999999999999999998875442 11 2389999999999999888876 468999
Q ss_pred EEEECCCCCCccchhHHHHhcCCCcEEEEcHHHH-HHHHHhcCcCcc-------ceeEEEEeCcccccC
Q 000379 122 EEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALRKAFLSLD-------IVCFIVIDECHHATG 182 (1604)
Q Consensus 122 ~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~L-l~~l~~~~~~l~-------~i~llI~DEaH~~~~ 182 (1604)
..++|+.+.... .... .++|+|+||+.| ++.++.+.+.++ .+.++|+|||+.+.-
T Consensus 167 ~~i~GG~~~~eq-----~~~y-~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 167 GVLVSGSPLEKR-----KEIY-QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred EEEeCCCCHHHH-----HHHc-CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 999998765531 1122 589999999999 999998866665 458999999999853
No 153
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.58 E-value=2.5e-14 Score=172.47 Aligned_cols=133 Identities=21% Similarity=0.223 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCC------------------CCeeEEEEEcCCCCC
Q 000379 394 YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL------------------THLTVAYLTGSTTSV 455 (1604)
Q Consensus 394 ~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~------------------~~~~~~~l~G~~~~~ 455 (1604)
..|+|+..|++||.... .-+.+.|||.++..+.+.|..+|...+.- .|.....+.|.
T Consensus 1123 ~~SgKmiLLleIL~mce-eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGs---- 1197 (1567)
T KOG1015|consen 1123 EHSGKMILLLEILRMCE-EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGS---- 1197 (1567)
T ss_pred hcCcceehHHHHHHHHH-HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCc----
Confidence 45889999999997654 45579999999999999999999765321 11223334444
Q ss_pred CCCCHHHHHHHHHHHhCCC---c-eEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEe
Q 000379 456 DALTPKVQKEVLESFRGGK---V-NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLE 527 (1604)
Q Consensus 456 ~~m~~~~r~~vl~~Fr~g~---~-~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~ 527 (1604)
.+..+|....+.|.+-. . -.||+|.+++-|||+-++|-||.||..||+.--+|++=|+.|.|+. .|-|+.
T Consensus 1198 --t~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015|consen 1198 --TTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred --ccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh
Confidence 56788899999998742 2 2689999999999999999999999999999999999999999986 344566
Q ss_pred ccCHHH
Q 000379 528 RGNLKQ 533 (1604)
Q Consensus 528 ~~~~~~ 533 (1604)
.|+.++
T Consensus 1276 qGTmEe 1281 (1567)
T KOG1015|consen 1276 QGTMEE 1281 (1567)
T ss_pred cccHHH
Confidence 776663
No 154
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.57 E-value=1.9e-13 Score=163.59 Aligned_cols=309 Identities=17% Similarity=0.215 Sum_probs=195.5
Q ss_pred cHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEE
Q 000379 47 RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125 (1604)
Q Consensus 47 r~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 125 (1604)
..|-.+++..+.+ +-+||+++||||||...--.+.+.. ....+++.+.-|.+.-+...++......+-+.+.-+
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG-----~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAG-----FASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcc-----cccCCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 4455556666654 5678999999999986555444332 123334888899988777777777665554443333
Q ss_pred CCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc---CCCCc
Q 000379 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS---DNKPK 202 (1604)
Q Consensus 126 G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~---~~~p~ 202 (1604)
|-. ....+.--....|.++|-++|++.+.... .++++++||+||||.-.- ...++-.++... ...-+
T Consensus 128 GY~------IRFed~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl---~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 128 GYT------IRFEDSTSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSL---HTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred eeE------EEecccCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhh---HHHHHHHHHHHHHhcCCCce
Confidence 311 00111112367899999999988776543 478899999999998642 233333333321 22358
Q ss_pred EEEEeccCCCCCCCCCcccHHHHHHHHHhhcCC-ceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhh
Q 000379 203 VFGMTASPVVRKGVSSAMDCEGQISELESTLDS-QVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281 (1604)
Q Consensus 203 iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~-~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~ 281 (1604)
++.||||.. ...+.+.++. .++++..|.- | +.+.|.+.+.
T Consensus 198 lIimSATld--------------a~kfS~yF~~a~i~~i~GR~f-------P--Vei~y~~~p~---------------- 238 (674)
T KOG0922|consen 198 LIIMSATLD--------------AEKFSEYFNNAPILTIPGRTF-------P--VEILYLKEPT---------------- 238 (674)
T ss_pred EEEEeeeec--------------HHHHHHHhcCCceEeecCCCC-------c--eeEEeccCCc----------------
Confidence 999999953 2344444433 5555544321 1 1122211110
Q ss_pred chhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHH
Q 000379 282 DASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFL 361 (1604)
Q Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1604)
.+|+
T Consensus 239 ----------------------------------------------------------------------------~dYv 242 (674)
T KOG0922|consen 239 ----------------------------------------------------------------------------ADYV 242 (674)
T ss_pred ----------------------------------------------------------------------------hhhH
Confidence 0001
Q ss_pred HHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC----
Q 000379 362 EEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV---- 437 (1604)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~---- 437 (1604)
+.. +...+++-.. .+..-++||-......+.+.+.|.+.
T Consensus 243 ~a~----------------------------------~~tv~~Ih~~---E~~GDILvFLtGqeEIe~~~~~l~e~~~~~ 285 (674)
T KOG0922|consen 243 DAA----------------------------------LITVIQIHLT---EPPGDILVFLTGQEEIEAACELLRERAKSL 285 (674)
T ss_pred HHH----------------------------------HHHHHHHHcc---CCCCCEEEEeCCHHHHHHHHHHHHHHhhhc
Confidence 010 1111111111 23345899999998888777777654
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEE--------cCC--------
Q 000379 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR--------FDL-------- 501 (1604)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~--------fD~-------- 501 (1604)
+......+..++|. |+.++|..+++.--.|.-+|++||+++|..|-|+++.+||. |++
T Consensus 286 ~~~~~~~~lply~a------L~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~ 359 (674)
T KOG0922|consen 286 PEDCPELILPLYGA------LPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLI 359 (674)
T ss_pred cccCcceeeeeccc------CCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCcccee
Confidence 21111245668888 99999999999988899999999999999999999999994 544
Q ss_pred --CCCHHHHHHHhhhhcccCc-eEEEEEec
Q 000379 502 --PKTVSSYIQSRGRARQHNS-QFILMLER 528 (1604)
Q Consensus 502 --p~s~~syiQr~GRA~R~gs-~~i~~v~~ 528 (1604)
|-|-.+-.||.|||||.|. +++-++.+
T Consensus 360 v~~ISkasA~QRaGRAGRt~pGkcyRLYte 389 (674)
T KOG0922|consen 360 VVPISKASANQRAGRAGRTGPGKCYRLYTE 389 (674)
T ss_pred EEechHHHHhhhcccCCCCCCceEEEeeeH
Confidence 4477888999999999985 57777653
No 155
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.53 E-value=1.3e-13 Score=143.36 Aligned_cols=142 Identities=26% Similarity=0.321 Sum_probs=108.7
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC--CcEEEEECCCCCCccchhH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQC 137 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~--~~v~~~~G~~~~~~~~~~~ 137 (1604)
+++++.++||+|||.+++.++.+... .+..+++++++|++.|+.|+.+.+..... ..+..+.+..... ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~----~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 72 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLD----SLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIK----QQ 72 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHh----cccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchh----HH
Confidence 47899999999999999999888765 23456799999999999999999998875 7787777754322 23
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 138 w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
+.......+|+++|++.+...+.........++++|+||||++.........+. ........+++++|||||
T Consensus 73 ~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~-~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 73 EKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLK-ILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHH-HHhhCCccceEEEEeccC
Confidence 344456899999999999887776655567889999999999976543333211 112234678999999998
No 156
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.52 E-value=9.4e-13 Score=175.78 Aligned_cols=134 Identities=21% Similarity=0.221 Sum_probs=94.3
Q ss_pred CCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH-HH--
Q 000379 42 INFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD-VI-- 113 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~-~i-- 113 (1604)
..+++|+.|.++++.+. ++++++.||||+|||+++++++..... .+++++|.+||++|..|+.. .+
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------~~~~vvi~t~t~~Lq~Ql~~~~~~~ 315 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------TEKPVVISTNTKVLQSQLLEKDIPL 315 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc------CCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 46889999999887553 477899999999999999998765432 34579999999999999865 33
Q ss_pred -HhhcC--CcEEEEECCCCC--------------C------------ccc-----------------hhHHH--------
Q 000379 114 -RVHTD--FEVEEYYGAKGV--------------D------------EWD-----------------SQCWQ-------- 139 (1604)
Q Consensus 114 -~~~~~--~~v~~~~G~~~~--------------~------------~~~-----------------~~~w~-------- 139 (1604)
.+.++ +++..+.|..+. + .|- ...|.
T Consensus 316 l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~~~~~l 395 (850)
T TIGR01407 316 LNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVRHDGNL 395 (850)
T ss_pred HHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhhcCCCC
Confidence 44444 667767664321 0 010 00122
Q ss_pred ----------------HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 140 ----------------KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 140 ----------------~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
.....++|||+.+.-|++.+.....-+....++|||||||+.
T Consensus 396 ~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~ 453 (850)
T TIGR01407 396 SKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLP 453 (850)
T ss_pred CCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHH
Confidence 122456899999999988775443234556799999999985
No 157
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=7.9e-13 Score=166.97 Aligned_cols=121 Identities=11% Similarity=0.173 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...+++.+.... ..+..+||||+++..++.|.++|.. .++....+|+. +.+|+..+..|+.+..
T Consensus 581 ~eK~~Ali~~I~~~~-~~grpVLIft~Sve~sE~Ls~~L~~----~gI~h~vLnak--------q~~REa~Iia~AG~~g 647 (1025)
T PRK12900 581 REKYNAIVLKVEELQ-KKGQPVLVGTASVEVSETLSRMLRA----KRIAHNVLNAK--------QHDREAEIVAEAGQKG 647 (1025)
T ss_pred HHHHHHHHHHHHHHh-hCCCCEEEEeCcHHHHHHHHHHHHH----cCCCceeecCC--------HHHhHHHHHHhcCCCC
Confidence 468889999886653 3456899999999999999999988 47888888875 7789999999999999
Q ss_pred eEEEEccccccccCCC---Ccc-----EEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEecc
Q 000379 476 NLLFATDVIEEGMHVP---NCS-----YVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERG 529 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip---~~n-----lVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~ 529 (1604)
.|+|||+++++|+||+ .+. +||.++.|.+.+.|.|++||+||.|.. .+.|+..+
T Consensus 648 ~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSle 711 (1025)
T PRK12900 648 AVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLE 711 (1025)
T ss_pred eEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechh
Confidence 9999999999999999 453 359999999999999999999999964 56666543
No 158
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=99.50 E-value=6.1e-12 Score=161.80 Aligned_cols=102 Identities=10% Similarity=0.100 Sum_probs=78.5
Q ss_pred CCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHH
Q 000379 144 KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223 (1604)
Q Consensus 144 ~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~ 223 (1604)
...|++.||++|.+.+..+.++++++..|||||||++.+++.|.-|++. |+...+.|.|.||||+|..-.. + .
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rl-yr~~n~~gfIkafSdsP~~~~~-----g-~ 79 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRL-YRQKNKTGFIKAFSDNPEAFTM-----G-F 79 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHH-HHHhCCCcceEEecCCCccccc-----c-h
Confidence 6789999999999999999999999999999999999999999999975 4556678999999999985320 1 1
Q ss_pred HHHHHHHhhcCCcee--eccchhhhhhccCC
Q 000379 224 GQISELESTLDSQVF--TIEDKTEMEVFVPS 252 (1604)
Q Consensus 224 ~~i~~Le~~l~~~i~--t~~~~~~l~~~~~~ 252 (1604)
..+..+...|..+-. .+.....+..+..+
T Consensus 80 ~~l~~vmk~L~i~~v~l~prf~~~V~~~l~~ 110 (814)
T TIGR00596 80 SPLETKMRNLFLRHVYLWPRFHVEVASSLEK 110 (814)
T ss_pred HHHHHHHHHhCcCeEEEeCCCchHHHHHhcc
Confidence 345566666655322 33455566666654
No 159
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.50 E-value=4.3e-14 Score=130.68 Aligned_cols=73 Identities=36% Similarity=0.651 Sum_probs=70.6
Q ss_pred CCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC
Q 000379 441 THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 441 ~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g 519 (1604)
.++.+..+||. ++..+|.++++.|++|+.+|||||+++++|||+|.+++||+||+|+|+..|+|+.||++|.|
T Consensus 6 ~~~~~~~i~~~------~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHGD------MSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEESTT------SHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEECC------CCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 47889999998 89999999999999999999999999999999999999999999999999999999999986
No 160
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.47 E-value=2.7e-12 Score=151.17 Aligned_cols=308 Identities=18% Similarity=0.212 Sum_probs=192.2
Q ss_pred HHHHHHHHhhccC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECC
Q 000379 49 YQLKVFEVAKRRN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGA 127 (1604)
Q Consensus 49 yQ~e~l~~~l~~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~ 127 (1604)
.+.+++..+.+.+ +||+++||||||....-.+.+- .-+..+.+-+.-|.+.-+...++.+....+...+.-+|-
T Consensus 360 ~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 360 CRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred HHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 3444555555444 5688999999998654433322 223455688888999988888888888776554444331
Q ss_pred CCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCCh-HHHHHHHHHhhcCCCCcEEEE
Q 000379 128 KGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP-YTKIMKEFYHKSDNKPKVFGM 206 (1604)
Q Consensus 128 ~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~-~~~im~~~~~~~~~~p~iLgL 206 (1604)
. +. .-+---....|-.||-++|+.-.... -.+.+.+.||+||||.-.-|.. ...+++.... ....-+++-+
T Consensus 435 s-IR-----FEdvT~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKliVt 506 (1042)
T KOG0924|consen 435 S-IR-----FEDVTSEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLIVT 506 (1042)
T ss_pred E-EE-----eeecCCCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhccceEEEe
Confidence 1 00 00111135678899999998654432 2467899999999998865522 2333343322 2235788999
Q ss_pred eccCCCCCCCCCcccHHHHHHHHHhhcC-CceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhhchhH
Q 000379 207 TASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASL 285 (1604)
Q Consensus 207 TATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~ 285 (1604)
|||.. ...+.+.++ +..++...|.- |. ...|...+
T Consensus 507 SATm~--------------a~kf~nfFgn~p~f~IpGRTy-------PV--~~~~~k~p--------------------- 542 (1042)
T KOG0924|consen 507 SATMD--------------AQKFSNFFGNCPQFTIPGRTY-------PV--EIMYTKTP--------------------- 542 (1042)
T ss_pred ecccc--------------HHHHHHHhCCCceeeecCCcc-------ce--EEEeccCc---------------------
Confidence 99953 456666666 56666544321 11 11111110
Q ss_pred HHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHH
Q 000379 286 SKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL 365 (1604)
Q Consensus 286 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (1604)
+..|++.+.
T Consensus 543 -----------------------------------------------------------------------~eDYVeaav 551 (1042)
T KOG0924|consen 543 -----------------------------------------------------------------------VEDYVEAAV 551 (1042)
T ss_pred -----------------------------------------------------------------------hHHHHHHHH
Confidence 011111111
Q ss_pred HHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHH----HHHHHHHHHhhCCCC-
Q 000379 366 HVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII----AAKVVERFVKKVPFL- 440 (1604)
Q Consensus 366 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~----ta~~L~~~L~~~~~~- 440 (1604)
.+.- .-+.....+-.+||..... ++..|.+.|.++-.-
T Consensus 552 kq~v-------------------------------------~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~ 594 (1042)
T KOG0924|consen 552 KQAV-------------------------------------QIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAP 594 (1042)
T ss_pred hhhe-------------------------------------EeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCC
Confidence 1100 0011123345788887554 445555555554222
Q ss_pred -CCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCC------------------
Q 000379 441 -THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL------------------ 501 (1604)
Q Consensus 441 -~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~------------------ 501 (1604)
.++.+..+.+. |+...|.+++++--.|.-+|+|||+++|..|-||++.+||.-+.
T Consensus 595 ~~~L~vlpiYSQ------Lp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~ 668 (1042)
T KOG0924|consen 595 TTDLAVLPIYSQ------LPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIV 668 (1042)
T ss_pred CCceEEEeehhh------CchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEE
Confidence 36777778777 89999999999988999999999999999999999999996332
Q ss_pred CCCHHHHHHHhhhhcccCc-eEEEEEe
Q 000379 502 PKTVSSYIQSRGRARQHNS-QFILMLE 527 (1604)
Q Consensus 502 p~s~~syiQr~GRA~R~gs-~~i~~v~ 527 (1604)
|-|-..--||.|||||.|. .++-+++
T Consensus 669 pIS~AnA~QRaGRAGRt~pG~cYRlYT 695 (1042)
T KOG0924|consen 669 PISQANADQRAGRAGRTGPGTCYRLYT 695 (1042)
T ss_pred echhccchhhccccCCCCCcceeeehh
Confidence 4456667899999999985 4666665
No 161
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.45 E-value=5.8e-13 Score=136.93 Aligned_cols=114 Identities=36% Similarity=0.531 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCce
Q 000379 397 TKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476 (1604)
Q Consensus 397 ~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~ 476 (1604)
.|...+.+++..... .+.++|||++++..++.+.+.|.. .+..+..++|. ++..+|..++++|++|...
T Consensus 12 ~k~~~i~~~i~~~~~-~~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~------~~~~~~~~~~~~f~~~~~~ 80 (131)
T cd00079 12 EKLEALLELLKEHLK-KGGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGD------GSQEEREEVLKDFREGEIV 80 (131)
T ss_pred HHHHHHHHHHHhccc-CCCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECC------CCHHHHHHHHHHHHcCCCc
Confidence 688888888877642 457899999999999999999987 35678899998 7899999999999999999
Q ss_pred EEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce
Q 000379 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 477 iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~ 521 (1604)
+||+|+++++|+|+|.++.||.++.|++...|+|++||++|.|+.
T Consensus 81 ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~ 125 (131)
T cd00079 81 VLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQK 125 (131)
T ss_pred EEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCC
Confidence 999999999999999999999999999999999999999999964
No 162
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.45 E-value=6.7e-12 Score=155.65 Aligned_cols=133 Identities=23% Similarity=0.279 Sum_probs=95.9
Q ss_pred CCCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc--
Q 000379 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-- 117 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~-- 117 (1604)
...+.|+..|.--..++. ++..-+.||||.|||.-.++....+.. .++++++++||..||.|.++.++++.
T Consensus 78 ~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~------kgkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 78 ATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK------KGKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred hhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh------cCCeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 346689999998887776 588889999999999855554444433 45789999999999999999999875
Q ss_pred -C-CcEEE-EECCCCCCccchhHHHHhc--CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC
Q 000379 118 -D-FEVEE-YYGAKGVDEWDSQCWQKEI--NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN 183 (1604)
Q Consensus 118 -~-~~v~~-~~G~~~~~~~~~~~w~~~~--~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~ 183 (1604)
+ ..+.. |||...... ++.....+ ++.+|+|+|.|.|...+.. +.--++++|++|.++.+.+.
T Consensus 152 ~~~~~~~~~yh~~l~~~e--kee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 152 AGSLDVLVVYHSALPTKE--KEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred cCCcceeeeeccccchHH--HHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhc
Confidence 2 33333 677655433 22222223 4699999999988665542 11246899999999988754
No 163
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.43 E-value=2.6e-13 Score=123.36 Aligned_cols=73 Identities=32% Similarity=0.565 Sum_probs=66.6
Q ss_pred CchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCC---ceEEEeC--CCCCCccchhh
Q 000379 1509 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEF---GNVECNG--DPRADKKSSFD 1583 (1604)
Q Consensus 1509 ~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~---~~~~~~g--~~~ssKK~A~~ 1583 (1604)
+|++.|+|+|++++|+.|.|++..+ .||+|. +.|+|+|+|.+..+ +.+.+.| ++.++||+||+
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~---------~Gp~~~---~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~ 69 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSE---------SGPDHR---KLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKE 69 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEec---------cCCCcc---EEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHH
Confidence 5789999999999999999999877 899998 99999999998876 5677777 88899999999
Q ss_pred hHHHHHHHHH
Q 000379 1584 SAALIMLHEL 1593 (1604)
Q Consensus 1584 ~AA~~~l~~l 1593 (1604)
.||+.||+.|
T Consensus 70 ~AA~~~L~~L 79 (80)
T PF14709_consen 70 SAAQQALQAL 79 (80)
T ss_pred HHHHHHHHhc
Confidence 9999999987
No 164
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.42 E-value=7.7e-12 Score=147.49 Aligned_cols=313 Identities=17% Similarity=0.189 Sum_probs=193.7
Q ss_pred CCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEE
Q 000379 45 IPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
.-.+|-.+++.++.. +=+||.++||||||...--.+.+.. ....++++-+.-|.+.-+-..+..+.+..|.+.+.
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaG----ytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAG----YTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcc----cccCCceEeecCcchHHHHHHHHHHHHHhCccccc
Confidence 345566667777765 4467899999999986544443322 13345558889999998888888888877766544
Q ss_pred EECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCC-hHHHHHHHHHhhcCCCCc
Q 000379 124 YYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH-PYTKIMKEFYHKSDNKPK 202 (1604)
Q Consensus 124 ~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~-~~~~im~~~~~~~~~~p~ 202 (1604)
-+|= +...-+.--+..-+-+||-++|+.-+... ..+...++||+||||.-.-.. -...+++..... .+.-+
T Consensus 341 eVGY------sIRFEdcTSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~-RpdLK 412 (902)
T KOG0923|consen 341 EVGY------SIRFEDCTSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARF-RPDLK 412 (902)
T ss_pred ccce------EEEeccccCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhh-CCcce
Confidence 4441 11111112235678899999998877643 467889999999999865321 223333333222 24457
Q ss_pred EEEEeccCCCCCCCCCcccHHHHHHHHHhhcCC-ceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhh
Q 000379 203 VFGMTASPVVRKGVSSAMDCEGQISELESTLDS-QVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281 (1604)
Q Consensus 203 iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~-~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~ 281 (1604)
.|.+|||.. ..+....+|. .+|.+..|- -.+.++|...+.
T Consensus 413 llIsSAT~D--------------AekFS~fFDdapIF~iPGRR---------yPVdi~Yt~~PE---------------- 453 (902)
T KOG0923|consen 413 LLISSATMD--------------AEKFSAFFDDAPIFRIPGRR---------YPVDIFYTKAPE---------------- 453 (902)
T ss_pred EEeeccccC--------------HHHHHHhccCCcEEeccCcc---------cceeeecccCCc----------------
Confidence 899999943 2344455543 444433221 011223322111
Q ss_pred chhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHH
Q 000379 282 DASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFL 361 (1604)
Q Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1604)
.+|+
T Consensus 454 ----------------------------------------------------------------------------AdYl 457 (902)
T KOG0923|consen 454 ----------------------------------------------------------------------------ADYL 457 (902)
T ss_pred ----------------------------------------------------------------------------hhHH
Confidence 0011
Q ss_pred HHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHH----HHHHHHhhC
Q 000379 362 EEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAK----VVERFVKKV 437 (1604)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~----~L~~~L~~~ 437 (1604)
+.....+ +.-+...+.+-+|||.......+ .|.+..+.+
T Consensus 458 dAai~tV-------------------------------------lqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~L 500 (902)
T KOG0923|consen 458 DAAIVTV-------------------------------------LQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRL 500 (902)
T ss_pred HHHHhhh-------------------------------------eeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHh
Confidence 1110000 00000112234678876544333 344444444
Q ss_pred C-CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEE--------cCC-------
Q 000379 438 P-FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR--------FDL------- 501 (1604)
Q Consensus 438 ~-~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~--------fD~------- 501 (1604)
. .+..+.+..++.+ ++...|..+++---.|--+|++||+++|..|-|+++++||. |++
T Consensus 501 Gski~eliv~PiYaN------LPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL 574 (902)
T KOG0923|consen 501 GSKIRELIVLPIYAN------LPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESL 574 (902)
T ss_pred ccccceEEEeecccc------CChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeE
Confidence 2 2345667777887 89999999999989999999999999999999999999995 332
Q ss_pred ---CCCHHHHHHHhhhhcccCc-eEEEEEe
Q 000379 502 ---PKTVSSYIQSRGRARQHNS-QFILMLE 527 (1604)
Q Consensus 502 ---p~s~~syiQr~GRA~R~gs-~~i~~v~ 527 (1604)
|-|-.+-.||.|||||-|. +++-+++
T Consensus 575 ~v~piSKAsA~QRaGRAGRtgPGKCfRLYt 604 (902)
T KOG0923|consen 575 LVTPISKASANQRAGRAGRTGPGKCFRLYT 604 (902)
T ss_pred EEeeechhhhhhhccccCCCCCCceEEeec
Confidence 4467778999999999994 5777765
No 165
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=4.2e-12 Score=152.10 Aligned_cols=130 Identities=19% Similarity=0.288 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEE--------cCCCCCHH----------HHHHHhhhhcccC
Q 000379 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR--------FDLPKTVS----------SYIQSRGRARQHN 519 (1604)
Q Consensus 458 m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~--------fD~p~s~~----------syiQr~GRA~R~g 519 (1604)
++.++|..+++.--.|.--|+|||+|+|..|-||++.+||. ||.-..+. +--||.|||||.|
T Consensus 614 Ls~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg 693 (1172)
T KOG0926|consen 614 LSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG 693 (1172)
T ss_pred cCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC
Confidence 67889999999999999999999999999999999999994 56544443 4469999999999
Q ss_pred c-eEEEEEeccCHHHHHHHHHHHHHHHhhhhccccCCchh---hhhhccccccccceeecCCCceechhhHHHHHHHHHh
Q 000379 520 S-QFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEA---CFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCE 595 (1604)
Q Consensus 520 s-~~i~~v~~~~~~~~~~l~~~~~~e~~~~~~~~~r~~~~---~~l~~~~~~~~~~y~v~~tga~l~~~~a~~~l~~yc~ 595 (1604)
. +++-++...-.. ..+++. ...+ ++ +.|-+ -.++.+..+....|..++.-...-+..|..+|...-+
T Consensus 694 pGHcYRLYSSAVf~--~~Fe~f-----S~PE-Il-k~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgA 764 (1172)
T KOG0926|consen 694 PGHCYRLYSSAVFS--NDFEEF-----SLPE-IL-KKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGA 764 (1172)
T ss_pred CCceeehhhhHHhh--cchhhh-----ccHH-Hh-hCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhcc
Confidence 5 567666532111 011111 0100 11 11211 1223344445556767777778889999998877654
Q ss_pred h
Q 000379 596 M 596 (1604)
Q Consensus 596 ~ 596 (1604)
.
T Consensus 765 L 765 (1172)
T KOG0926|consen 765 L 765 (1172)
T ss_pred c
Confidence 4
No 166
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.36 E-value=2.6e-12 Score=152.60 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=98.6
Q ss_pred HHHHHHHHhhc--------------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 49 YQLKVFEVAKR--------------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 49 yQ~e~l~~~l~--------------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
||.+++.++.. +++|+++++|+|||++++.++..+.... .......+|||||. .+..||..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~-~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEF-PQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCC-TTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcc-ccccccceeEeecc-chhhhhhhhhc
Confidence 79999887731 5689999999999999999988665411 11122359999999 88899999999
Q ss_pred hhc---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHH---HHhcCcCccceeEEEEeCcccccCCChHHH
Q 000379 115 VHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA---LRKAFLSLDIVCFIVIDECHHATGNHPYTK 188 (1604)
Q Consensus 115 ~~~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~---l~~~~~~l~~i~llI~DEaH~~~~~~~~~~ 188 (1604)
+++ .+++..+.|.. .............+|+|+|++.+... -....+..-++++||+||+|.+.+.. ..
T Consensus 79 ~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~ 152 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDS----ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SK 152 (299)
T ss_dssp HHSGT-TS-EEEESSSC----HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SH
T ss_pred ccccccccccccccccc----ccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--cc
Confidence 998 46777776654 01111223345789999999999811 00111222459999999999996432 22
Q ss_pred HHHHHHhhcCCCCcEEEEeccCCCCC
Q 000379 189 IMKEFYHKSDNKPKVFGMTASPVVRK 214 (1604)
Q Consensus 189 im~~~~~~~~~~p~iLgLTATP~~~~ 214 (1604)
..+.+.. -..+++++|||||..+.
T Consensus 153 ~~~~l~~--l~~~~~~lLSgTP~~n~ 176 (299)
T PF00176_consen 153 RYKALRK--LRARYRWLLSGTPIQNS 176 (299)
T ss_dssp HHHHHHC--CCECEEEEE-SS-SSSG
T ss_pred ccccccc--cccceEEeecccccccc
Confidence 2222211 13788999999999874
No 167
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.31 E-value=1.2e-09 Score=146.64 Aligned_cols=135 Identities=19% Similarity=0.239 Sum_probs=94.5
Q ss_pred CCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH----H
Q 000379 42 INFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD----V 112 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~----~ 112 (1604)
..+++|+-|.++...+. ++.++|-|+||+|||+.|++++..... ..+++++|-++|+.|.+|... .
T Consensus 254 ~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~-----~~~~~vvIsT~T~~LQ~Ql~~kDiP~ 328 (928)
T PRK08074 254 PKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAK-----KKEEPVVISTYTIQLQQQLLEKDIPL 328 (928)
T ss_pred CCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhh-----ccCCeEEEEcCCHHHHHHHHHhhHHH
Confidence 46899999999888764 367889999999999999998765433 245679999999999999765 3
Q ss_pred HHhhcC--CcEEEEECCCCC--------------------------Cccc-----------------hhHHH--------
Q 000379 113 IRVHTD--FEVEEYYGAKGV--------------------------DEWD-----------------SQCWQ-------- 139 (1604)
Q Consensus 113 i~~~~~--~~v~~~~G~~~~--------------------------~~~~-----------------~~~w~-------- 139 (1604)
+++.++ +++.++.|..+. -.|. ...|.
T Consensus 329 L~~~~~~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~~~ 408 (928)
T PRK08074 329 LQKIFPFPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGES 408 (928)
T ss_pred HHHHcCCCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccCcc
Confidence 555554 455555543220 0000 00122
Q ss_pred ------------------HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 140 ------------------KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 140 ------------------~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
.....++|||+....|+..+..+.--+...+.+|||||||+-
T Consensus 409 c~~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~ 468 (928)
T PRK08074 409 DGGKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFE 468 (928)
T ss_pred cCCCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHH
Confidence 223467899999999988774433335667999999999995
No 168
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.30 E-value=1.5e-11 Score=125.69 Aligned_cols=92 Identities=22% Similarity=0.303 Sum_probs=73.2
Q ss_pred ccccccccC-CCccccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCC
Q 000379 1487 CKKAYCMTV-GTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEF 1565 (1604)
Q Consensus 1487 ~~~~~~~~~-~~~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~ 1565 (1604)
|......++ ..|..--+.+...|||+.||||||+++..+ .|+++++ +||+|. +.|++.|.|.
T Consensus 86 ~~~~f~~~~d~~~~~~i~~~k~~DpKS~LQE~~Q~~~~~l-~Y~li~~---------~GpdH~---~~Ftv~V~V~---- 148 (183)
T PHA02701 86 CDTLFGGDIDVLTVSAVMRLKTLNPVSAVNEFCMRTHRPL-EFCETRS---------GGHDHC---PLFTCTIVVS---- 148 (183)
T ss_pred ccccccCccccccHHHhhcCCCCCccHHHHHHHHhcCCCC-eEEEEEe---------ECCCCC---ceEEEEEEEC----
Confidence 344444443 235555567778899999999999999888 8999887 899999 9999999883
Q ss_pred ceEEEeCCCCCCccchhhhHHHHHHHHHHHc
Q 000379 1566 GNVECNGDPRADKKSSFDSAALIMLHELERQ 1596 (1604)
Q Consensus 1566 ~~~~~~g~~~ssKK~A~~~AA~~~l~~l~~~ 1596 (1604)
+...+.|.| +|||+|||.||+.||..|...
T Consensus 149 g~~~g~G~G-~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 149 GKVVATASG-CSKKLARHAACADALTILINN 178 (183)
T ss_pred CEEEEEEEe-CCHHHHHHHHHHHHHHHHHhh
Confidence 556667777 669999999999999998543
No 169
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.29 E-value=1.6e-11 Score=134.73 Aligned_cols=112 Identities=26% Similarity=0.375 Sum_probs=96.8
Q ss_pred CCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhccccCC---CCCCCCchHHHHHHHHhcCCcceee-ee-eeCce
Q 000379 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTP---DKLELPPLRELIELCDSLGYFVKEN-CT-LKGEM 1398 (1604)
Q Consensus 1324 ~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~~~i~~---~~~~~~p~~~L~e~~~~~~~~~~~~-~~-~~g~~ 1398 (1604)
...+++++|+|||+|||||+|+|+ +.+++|+.+++.+.+.. ....+||++.||||+|+.++..|.| +. ..|+.
T Consensus 113 ~~~~silaD~~EAligAiylD~g~--~~~~~~i~~l~~~~~~~~~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~ 190 (235)
T COG0571 113 RRRESILADAFEALIGAIYLDSGL--EAARKFILKLFLPRLEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPA 190 (235)
T ss_pred CCchhHHHHHHHHHHHHHHHhCCh--HHHHHHHHHHHHHHHhhccccccccChhHHHHHHHHhcCCCCCeEEEeeccCCC
Confidence 557899999999999999999995 99999999999888763 2223799999999999999988844 33 34654
Q ss_pred --EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000379 1399 --VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1399 --~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
+.|++.|.++|. ..+.|.|+|||+|++.||+.||+.|..
T Consensus 191 h~~~F~v~v~v~~~-~~g~G~G~skk~AEq~AA~~al~~l~~ 231 (235)
T COG0571 191 HDKEFTVEVAVGGK-ELGTGKGRSKKEAEQAAAEQALKKLGV 231 (235)
T ss_pred CCceEEEEEEECCe-eEEEecccCHHHHHHHHHHHHHHHhcc
Confidence 899999999995 899999999999999999999999976
No 170
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.28 E-value=7.1e-10 Score=145.98 Aligned_cols=132 Identities=15% Similarity=0.191 Sum_probs=94.0
Q ss_pred CCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHH-HHH--
Q 000379 42 INFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY-DVI-- 113 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~-~~i-- 113 (1604)
..+++|+-|.++...+. ++.+++.++||+|||+++++++.... .+.++||++||++|.+|.. +.+
T Consensus 242 ~~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------~~~~vvI~t~T~~Lq~Ql~~~~i~~ 314 (820)
T PRK07246 242 LGLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------DQRQIIVSVPTKILQDQIMAEEVKA 314 (820)
T ss_pred CCCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHHHHH
Confidence 35899999999887664 36688999999999999999865432 2456999999999999993 444
Q ss_pred -HhhcCCcEEEEECCCCCC--------------------------cc-----------------chhHHHH---------
Q 000379 114 -RVHTDFEVEEYYGAKGVD--------------------------EW-----------------DSQCWQK--------- 140 (1604)
Q Consensus 114 -~~~~~~~v~~~~G~~~~~--------------------------~~-----------------~~~~w~~--------- 140 (1604)
.+.+++++..+.|+.+.- .| ....|..
T Consensus 315 l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~ 394 (820)
T PRK07246 315 IQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQ 394 (820)
T ss_pred HHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCC
Confidence 445677777666543200 01 0011221
Q ss_pred ---------------hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 141 ---------------EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 141 ---------------~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
....++|||+....|+..+..+. .+...+.+|||||||+.
T Consensus 395 ~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 395 SSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLM 449 (820)
T ss_pred CCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhH
Confidence 12456899999998887765443 25678999999999985
No 171
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.27 E-value=1.4e-11 Score=115.08 Aligned_cols=80 Identities=40% Similarity=0.689 Sum_probs=73.5
Q ss_pred HHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHH
Q 000379 430 VERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509 (1604)
Q Consensus 430 L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syi 509 (1604)
+++.|... ++.+..+||. ++.++|.++++.|++|...+||+|+++++|+|+|.++.||.+++|++...|+
T Consensus 3 l~~~l~~~----~~~~~~~~~~------~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~ 72 (82)
T smart00490 3 LAELLKEL----GIKVARLHGG------LSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYI 72 (82)
T ss_pred HHHHHHHC----CCeEEEEECC------CCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHH
Confidence 45566652 6788999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccC
Q 000379 510 QSRGRARQHN 519 (1604)
Q Consensus 510 Qr~GRA~R~g 519 (1604)
|++||++|.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999976
No 172
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.25 E-value=1.2e-11 Score=121.71 Aligned_cols=92 Identities=25% Similarity=0.384 Sum_probs=74.1
Q ss_pred ccccCcEEEeccCCceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEeeccCCccccccccCC
Q 000379 905 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFND 984 (1604)
Q Consensus 905 ~~l~~~vV~~~~~~~~Y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~~~~~ 984 (1604)
..+.|.+|.+.|+++.|.|.+|.+|++|.|.|+.. ++...||.+||+++||+.|.+++||||++....+ +.
T Consensus 26 ~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~-~~~~~S~~~Yy~~kY~i~I~~~~qPLL~~~~k~~--~~------ 96 (117)
T cd02845 26 KELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKS-DGTEITFVEYYKKQYNIEITDLNQPLLVSRPKRR--DP------ 96 (117)
T ss_pred HHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCC-CCCeeeHHHHHHHHcCCccccCCCCcEEeecccc--cc------
Confidence 45789999999999999999999999999999853 3347899999999999999999999999964332 00
Q ss_pred CCCCCCCCCCCCCCCCCCceeeeCcccceeeccc
Q 000379 985 GGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVP 1018 (1604)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~L~pel~~~~~ip 1018 (1604)
.......++||||+|.+.+++
T Consensus 97 -------------~~~~~~~iyL~pElC~ltglt 117 (117)
T cd02845 97 -------------RGGEKEPIYLIPELCFLTGLT 117 (117)
T ss_pred -------------CCCCCcEEEEchHHhhhcCCC
Confidence 001233478999999998764
No 173
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.23 E-value=1.7e-11 Score=110.04 Aligned_cols=68 Identities=28% Similarity=0.481 Sum_probs=59.4
Q ss_pred CchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHH
Q 000379 1509 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALI 1588 (1604)
Q Consensus 1509 ~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~ 1588 (1604)
|||+.|+||||+++|..|.|+++.. +||.|. +.|+|.|.+. +...+.|.| +|||.||+.||+.
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~---------~g~~~~---~~f~~~v~i~----~~~~~~g~g-~sKk~Ak~~AA~~ 63 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEE---------EGPDHA---PRFTVEVTVG----GKITGEGEG-SSKKEAKQNAAEA 63 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeee---------eCCCCC---CeEEEEEEEC----CEEEEEeec-CCHHHHHHHHHHH
Confidence 6889999999999999999999776 799998 8999999883 456677777 5799999999999
Q ss_pred HHHHH
Q 000379 1589 MLHEL 1593 (1604)
Q Consensus 1589 ~l~~l 1593 (1604)
||+.|
T Consensus 64 al~~L 68 (68)
T cd00048 64 ALRKL 68 (68)
T ss_pred HHHhC
Confidence 99865
No 174
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=2e-09 Score=133.22 Aligned_cols=127 Identities=17% Similarity=0.111 Sum_probs=92.3
Q ss_pred CCCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh---hcC
Q 000379 42 INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---HTD 118 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---~~~ 118 (1604)
..+.|++.|.-..-.++. .-|+.|.||.|||++|.+++..... .++.|-+++|+--|+.|-++.+.. ++|
T Consensus 75 lg~r~ydvQlig~l~Ll~-G~VaEM~TGEGKTLvA~l~a~l~AL------~G~~VhvvT~NdyLA~RDae~m~~ly~~LG 147 (764)
T PRK12326 75 LGLRPFDVQLLGALRLLA-GDVIEMATGEGKTLAGAIAAAGYAL------QGRRVHVITVNDYLARRDAEWMGPLYEALG 147 (764)
T ss_pred cCCCcchHHHHHHHHHhC-CCcccccCCCCHHHHHHHHHHHHHH------cCCCeEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 356778888777766654 4578999999999999997765443 345589999999999998888775 468
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHH-HHHHHhc------CcCccceeEEEEeCccccc
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALRKA------FLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~L-l~~l~~~------~~~l~~i~llI~DEaH~~~ 181 (1604)
+.|+.+.+++..+. +...-.+||+.+|...| .+.|+.. ......+++.|+||++.+.
T Consensus 148 Lsvg~i~~~~~~~e------rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 148 LTVGWITEESTPEE------RRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred CEEEEECCCCCHHH------HHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 99999988765332 12222689999999765 2333222 2234568899999999885
No 175
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=7.9e-10 Score=140.10 Aligned_cols=126 Identities=20% Similarity=0.131 Sum_probs=91.0
Q ss_pred CCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh---cCC
Q 000379 43 NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---TDF 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---~~~ 119 (1604)
.+.|++.|.-.- .++.+.-|+-|.||.|||++|.+++..... .++.|-+++|+-.|+.|-++.+..+ +|+
T Consensus 80 Gm~~ydVQliGg-~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al------~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl 152 (913)
T PRK13103 80 GMRHFDVQLIGG-MTLHEGKIAEMRTGEGKTLVGTLAVYLNAL------SGKGVHVVTVNDYLARRDANWMRPLYEFLGL 152 (913)
T ss_pred CCCcchhHHHhh-hHhccCccccccCCCCChHHHHHHHHHHHH------cCCCEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 345555555332 335678899999999999999998765433 3455899999999999998888765 489
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHH-HHHHHhcC------cCccceeEEEEeCccccc
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALRKAF------LSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~L-l~~l~~~~------~~l~~i~llI~DEaH~~~ 181 (1604)
.|+.+.|++.... ++..-.++|+++|...| .+.|+... .....+.++|+||+|.+.
T Consensus 153 ~v~~i~~~~~~~e------rr~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 153 SVGIVTPFQPPEE------KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEEEECCCCCHHH------HHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9999988765432 12222489999999887 34443321 123778999999999986
No 176
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.18 E-value=2.9e-10 Score=143.47 Aligned_cols=121 Identities=18% Similarity=0.146 Sum_probs=99.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC
Q 000379 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474 (1604)
Q Consensus 395 ~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~ 474 (1604)
.+.|+..+.++|.........++|||++-...+..+...|.. .++....+.|. |+.+.|.+++..|..+.
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~----~~~~~~~~~g~------~~~~~r~~s~~~~~~~~ 589 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFF----KGFVFLRYDGE------MLMKIRTKSFTDFPCDP 589 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhh----cccccchhhhh------hHHHHHHhhhcccccCc
Confidence 477888888888744322224899999999999888877763 56777788888 89999999999999653
Q ss_pred -ce-EEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCceEEEE
Q 000379 475 -VN-LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525 (1604)
Q Consensus 475 -~~-iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~~i~~ 525 (1604)
.+ .+++..++..|+|+-.+++|++.|+.||+..-.|.+-||.|.|++--++
T Consensus 590 ~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~ 642 (674)
T KOG1001|consen 590 LVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVK 642 (674)
T ss_pred cHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceee
Confidence 33 4578999999999999999999999999999999999999999863333
No 177
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.17 E-value=5.3e-11 Score=106.41 Aligned_cols=66 Identities=24% Similarity=0.382 Sum_probs=57.6
Q ss_pred chhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHH
Q 000379 1510 PRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIM 1589 (1604)
Q Consensus 1510 ~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~ 1589 (1604)
||+.|+||||+++| .|.|+++.+ +||+|. +.|+|.|.+. +...+.|.| +|||.||+.||+.|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~---------~g~~~~---~~f~~~v~i~----~~~~~~g~g-~sKk~Ak~~AA~~a 62 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKE---------EGPDHA---PRFTVTVKVG----GEYTGEGEG-SSKKEAKQRAAEAA 62 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEee---------eCCCCC---CcEEEEEEEC----CEEEEEecc-CCHHHHHHHHHHHH
Confidence 67999999999999 899999886 799998 8999999883 445566776 67999999999999
Q ss_pred HHHH
Q 000379 1590 LHEL 1593 (1604)
Q Consensus 1590 l~~l 1593 (1604)
|+.|
T Consensus 63 l~~L 66 (67)
T smart00358 63 LRSL 66 (67)
T ss_pred HHhc
Confidence 9977
No 178
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.15 E-value=6e-11 Score=122.73 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=64.2
Q ss_pred ccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCcc
Q 000379 1500 VAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKK 1579 (1604)
Q Consensus 1500 ~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK 1579 (1604)
...++++..|||+.||||||+++... |..+++ +||+|. +.|++.|.|. +.....|.| +|||
T Consensus 101 ~k~~d~K~kNpKS~LQE~~Qk~~~~~--y~~i~~---------~Gp~H~---p~F~v~V~I~----g~~~g~G~G-~SKK 161 (183)
T PHA03103 101 KKIISWKDKNPCTVINEYCQITSRDW--SINITS---------SGPSHS---PTFTASVIIS----GIKFKPAIG-STKK 161 (183)
T ss_pred hhhhccccCChhHHHHHHHHHhCCCe--EEEEEe---------eCCCCC---ceEEEEEEEC----CEEEEEeee-CCHH
Confidence 34468888999999999999998875 656666 799999 9999999884 445566777 6699
Q ss_pred chhhhHHHHHHHHHHHc
Q 000379 1580 SSFDSAALIMLHELERQ 1596 (1604)
Q Consensus 1580 ~A~~~AA~~~l~~l~~~ 1596 (1604)
+|||.||+.||..|...
T Consensus 162 eAEQ~AAk~AL~~L~~~ 178 (183)
T PHA03103 162 EAKNNAAKLAMDKILNY 178 (183)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999543
No 179
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.14 E-value=6.4e-09 Score=132.80 Aligned_cols=161 Identities=15% Similarity=0.163 Sum_probs=96.2
Q ss_pred CCcHHHHHHHHHhhc-------cCE--EEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 45 IPRIYQLKVFEVAKR-------RNT--IAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~-------~n~--Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
.-..||-.|++.+.. ... +-.+.||+|||++=.-+|..+.. ...+.|..|-.-.|.|--|.-+++++
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd----~~~g~RfsiALGLRTLTLQTGda~r~ 483 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRD----DKQGARFAIALGLRSLTLQTGHALKT 483 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCC----CCCCceEEEEccccceeccchHHHHH
Confidence 346799999998752 333 33478999999987777666543 34455777777888888888888888
Q ss_pred hcCC---cEEEEECCC----------------------CCCccc---h----hHHH------------------HhcCCC
Q 000379 116 HTDF---EVEEYYGAK----------------------GVDEWD---S----QCWQ------------------KEINKN 145 (1604)
Q Consensus 116 ~~~~---~v~~~~G~~----------------------~~~~~~---~----~~w~------------------~~~~~~ 145 (1604)
-+++ ...++.|+. +.+.+- . -.|+ ..+-..
T Consensus 484 rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~a 563 (1110)
T TIGR02562 484 RLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAA 563 (1110)
T ss_pred hcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcC
Confidence 6654 344444431 111100 0 0011 111235
Q ss_pred cEEEEcHHHHHHHHH--h-cCcCcc--c--eeEEEEeCcccccCCChHHHHHHHHHh-hcCCCCcEEEEeccCC
Q 000379 146 DVLVMTPQILLDALR--K-AFLSLD--I--VCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPV 211 (1604)
Q Consensus 146 ~ViV~T~q~Ll~~l~--~-~~~~l~--~--i~llI~DEaH~~~~~~~~~~im~~~~~-~~~~~p~iLgLTATP~ 211 (1604)
.|+|||+..++.... + +...+. . =+.|||||+|-+-.. .... +..+++ ...-..+++.||||..
T Consensus 564 pv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~-L~rlL~w~~~lG~~VlLmSATLP 635 (1110)
T TIGR02562 564 PVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPA-LLRLVQLAGLLGSRVLLSSATLP 635 (1110)
T ss_pred CeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHH-HHHHHHHHHHcCCCEEEEeCCCC
Confidence 899999998876652 2 221111 1 258999999987321 2222 222222 1234578999999965
No 180
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.11 E-value=9.2e-11 Score=130.18 Aligned_cols=73 Identities=25% Similarity=0.367 Sum_probs=63.8
Q ss_pred CCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHH
Q 000379 1508 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAAL 1587 (1604)
Q Consensus 1508 ~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~ 1587 (1604)
+.|.+.|||+|.+++. .|.|++.++ +||+|. +.|+++|++ +.++|+|+|+ |||.||+.||.
T Consensus 38 KS~IS~l~E~~~r~~~-~v~fevl~e---------eGp~H~---~~fv~rvtv-----g~~~a~GeG~-sKK~AKh~AA~ 98 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGL-TPVYEVLRE---------EGPPHM---PNFVFRVTV-----GEITATGEGK-SKKLAKHRAAE 98 (339)
T ss_pred CChHHHHHHHHHHhCC-Ccceeeeec---------cCCccC---CCeEEEEEE-----eeeEEecCCC-chhHHHHHHHH
Confidence 4466999999999998 459999998 999999 899999998 4789999995 49999999999
Q ss_pred HHHHHHHHcCee
Q 000379 1588 IMLHELERQGKI 1599 (1604)
Q Consensus 1588 ~~l~~l~~~~~~ 1599 (1604)
.||..|++.-.|
T Consensus 99 ~~L~~lk~l~~l 110 (339)
T KOG3732|consen 99 ALLKELKKLPPL 110 (339)
T ss_pred HHHHHHhcCCCc
Confidence 999999886543
No 181
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.07 E-value=1.9e-07 Score=121.74 Aligned_cols=63 Identities=30% Similarity=0.312 Sum_probs=50.9
Q ss_pred CCCCcHHHHHHHHHhh---c-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHH
Q 000379 43 NFIPRIYQLKVFEVAK---R-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY 110 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l---~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~ 110 (1604)
.+++|+-|.+|...+. . +.++|-|+||+|||+.|++++..... ..+++|||-+.|++|-+|..
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~-----~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIAR-----AEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHH-----HcCCeEEEEcCCHHHHHHHH
Confidence 5899999999887664 2 34678899999999999998765433 24566999999999998875
No 182
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.06 E-value=8.9e-10 Score=127.47 Aligned_cols=103 Identities=20% Similarity=0.387 Sum_probs=82.1
Q ss_pred CCcEEEEEEchHHHHHHHHHHHhhCCC--CCCee--EEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEcccccccc
Q 000379 413 TQVLCIIFVERIIAAKVVERFVKKVPF--LTHLT--VAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488 (1604)
Q Consensus 413 ~~~~~IIFv~~r~ta~~L~~~L~~~~~--~~~~~--~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGI 488 (1604)
.+.|||-||..|..++.+....+.+-. -+++. +..+.|. -...+|+++....-.|++.-+|||+++|-||
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGG------Y~A~DRRKIE~~~F~G~L~giIaTNALELGI 597 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGG------YIAEDRRKIESDLFGGKLCGIIATNALELGI 597 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCc------cchhhHHHHHHHhhCCeeeEEEecchhhhcc
Confidence 346999999999999877665544210 01111 1112233 6788999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhhhhcccCce
Q 000379 489 HVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 489 Dip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~ 521 (1604)
||...+.|+..+.|.|...+.|..|||||.+..
T Consensus 598 DIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 598 DIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred ccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 999999999999999999999999999998854
No 183
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.05 E-value=7.6e-10 Score=110.14 Aligned_cols=132 Identities=22% Similarity=0.280 Sum_probs=80.1
Q ss_pred cCEEEEeCCCChHHHHHH-HHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 60 RNTIAVLETGAGKTMIAV-MLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliai-lli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
+-.++-+.+|+|||.-.+ -++++.+. .+.++|+|.||+.++....+.++.. .+..-.. ...
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~------~~~rvLvL~PTRvva~em~~aL~~~---~~~~~t~--~~~------- 66 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIK------RRLRVLVLAPTRVVAEEMYEALKGL---PVRFHTN--ARM------- 66 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHH------TT--EEEEESSHHHHHHHHHHTTTS---SEEEEST--TSS-------
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHH------ccCeEEEecccHHHHHHHHHHHhcC---CcccCce--eee-------
Confidence 346788999999998543 35555555 5677999999999999888887632 2221111 110
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhh--cCCCCcEEEEeccCCCC
Q 000379 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK--SDNKPKVFGMTASPVVR 213 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~--~~~~p~iLgLTATP~~~ 213 (1604)
.....+.-|-|||+..+...+.. ...+.++++||+||||-. + |..-....+.+. .....+++.|||||-..
T Consensus 67 ~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-D--p~sIA~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 67 RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-D--PTSIAARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp ----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---S--HHHHHHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-C--HHHHhhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 02234677899999999887766 456789999999999986 2 333222222222 22345899999999743
No 184
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.4e-09 Score=115.79 Aligned_cols=204 Identities=24% Similarity=0.241 Sum_probs=154.9
Q ss_pred CChHHHHHhhccCCCC-------------------CCCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhc
Q 000379 1057 IPSSLILEALTTLGCC-------------------ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1117 (1604)
Q Consensus 1057 ~~~~lll~AlT~~s~~-------------------~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~ 1117 (1604)
++.+.++.|+|.+|+. ...+|+-|--.|-.|+.+.++.||-++||..+|-.++.+=+.+++
T Consensus 77 is~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~~kyPrlP~E~l~ai~n~ll~ 156 (333)
T KOG3769|consen 77 ISLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLKCKYPRLPEEGLHAIVNGLLG 156 (333)
T ss_pred ccHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHhhh
Confidence 4567888888888762 235789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchh
Q 000379 1118 NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTI 1197 (1604)
Q Consensus 1118 N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~l 1197 (1604)
...|+.+|..+|+.++++++.|.+- + ....+++.
T Consensus 157 ee~LahiAt~lGie~l~~seeFp~~-----~-----------------------------------------eisq~ess 190 (333)
T KOG3769|consen 157 EEVLAHIATHLGIEELGLSEEFPKV-----G-----------------------------------------EISQDESS 190 (333)
T ss_pred HHHHHHHHHHhhHHHHhhcccCCCc-----h-----------------------------------------hhhHHHHH
Confidence 9999999999999999999986531 0 00124677
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHhCCcccccchhhhhhhhcccccccCCCHHHHHHHHHHhCCccCCHHHHHHHHcc
Q 000379 1198 ADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITH 1277 (1604)
Q Consensus 1198 ADvvEAliGA~~~~~G~~~a~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH 1277 (1604)
++++=||+|+.+...|+....+|+..-.+
T Consensus 191 ~~aI~Al~~~~~~ek~~~~v~dFI~~qi~--------------------------------------------------- 219 (333)
T KOG3769|consen 191 RRAIGALLGSVGLEKGFNFVRDFINDQIL--------------------------------------------------- 219 (333)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhh---------------------------------------------------
Confidence 77877777776666665555444311000
Q ss_pred CCCCCCCchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHH
Q 000379 1278 ASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFK 1357 (1604)
Q Consensus 1278 ~S~~~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~ 1357 (1604)
+..++..++|.
T Consensus 220 ------------------------------------------------------------------~k~L~~~~m~q--- 230 (333)
T KOG3769|consen 220 ------------------------------------------------------------------SKDLDPREMWQ--- 230 (333)
T ss_pred ------------------------------------------------------------------hhccchHhhcc---
Confidence 00011111111
Q ss_pred hhhccccCCCCCCCCchHHHHHHHHhcCCcce--eeeeeeCce---EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHH
Q 000379 1358 PILSPIVTPDKLELPPLRELIELCDSLGYFVK--ENCTLKGEM---VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQL 1432 (1604)
Q Consensus 1358 ~~l~~~i~~~~~~~~p~~~L~e~~~~~~~~~~--~~~~~~g~~---~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~A 1432 (1604)
..+|...|.++|++.+..-+ ....+.|+. +.|.|.++.|.+ .+|.|.|.|-+.|+..||..|
T Consensus 231 ------------l~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kk-llGqG~Gesl~~A~e~AA~dA 297 (333)
T KOG3769|consen 231 ------------LQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKK-LLGQGQGESLKLAEEQAARDA 297 (333)
T ss_pred ------------ccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCch-hhccCcchHHHHHHHHHHHHH
Confidence 14799999999999998765 334455653 889999999885 999999999999999999999
Q ss_pred HHHhhhh
Q 000379 1433 LKKLEVC 1439 (1604)
Q Consensus 1433 L~~L~~~ 1439 (1604)
|.++..+
T Consensus 298 L~k~y~~ 304 (333)
T KOG3769|consen 298 LIKLYDH 304 (333)
T ss_pred HHHHHcC
Confidence 9999873
No 185
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.03 E-value=3.1e-08 Score=124.35 Aligned_cols=111 Identities=14% Similarity=0.222 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC-
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK- 474 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~- 474 (1604)
..|..++++-+.... ..+..+||.|.+...++.|.++|.+ .++...+++... ...-.+++. +.|.
T Consensus 409 ~~K~~Aii~ei~~~~-~~gqPVLVgT~SIe~SE~ls~~L~~----~gi~h~vLNAk~-------~e~EA~IIa--~AG~~ 474 (925)
T PRK12903 409 HAKWKAVVKEVKRVH-KKGQPILIGTAQVEDSETLHELLLE----ANIPHTVLNAKQ-------NAREAEIIA--KAGQK 474 (925)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH----CCCCceeecccc-------hhhHHHHHH--hCCCC
Confidence 467888777665443 3456799999999999999999998 467777777652 222233443 5564
Q ss_pred ceEEEEccccccccCCCCcc--------EEEEcCCCCCHHHHHHHhhhhcccCc
Q 000379 475 VNLLFATDVIEEGMHVPNCS--------YVIRFDLPKTVSSYIQSRGRARQHNS 520 (1604)
Q Consensus 475 ~~iLIaT~vleeGIDip~~n--------lVI~fD~p~s~~syiQr~GRA~R~gs 520 (1604)
-.|.|||+++++|.||.--. +||--..+.|.+---|.+|||||.|.
T Consensus 475 GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGD 528 (925)
T PRK12903 475 GAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGD 528 (925)
T ss_pred CeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCC
Confidence 57999999999999997433 89999999999999999999999994
No 186
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.01 E-value=1.7e-08 Score=128.66 Aligned_cols=135 Identities=10% Similarity=0.076 Sum_probs=101.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC-CcEEEEECCCCCCccchhHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQCWQK 140 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~-~~v~~~~G~~~~~~~~~~~w~~ 140 (1604)
.|..+-+|||||-+++-+|.+.+. .++.+|||+|.+.|..|..+.|+..++ ..+..++++.+... ..+.|..
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~------~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~-R~~~w~~ 235 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLR------AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPAD-RYRRWLA 235 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHH------cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHH-HHHHHHH
Confidence 344444699999999999999886 456699999999999999999999997 88999998876543 4566887
Q ss_pred hcCC-CcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc---CCChH--HHHHHHHHhhcCCCCcEEEEeccCC
Q 000379 141 EINK-NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT---GNHPY--TKIMKEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 141 ~~~~-~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~---~~~~~--~~im~~~~~~~~~~p~iLgLTATP~ 211 (1604)
...+ .+|||+|-..+ |..+.++.|||+||-|... ...|| .+-+..+ ........+++-||||.
T Consensus 236 ~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~-Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 236 VLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALL-RAHQHGCALLIGGHART 304 (665)
T ss_pred HhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHH-HHHHcCCcEEEECCCCC
Confidence 7654 79999997655 7889999999999999765 11333 1222211 12224567788899986
No 187
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.00 E-value=1.9e-10 Score=118.34 Aligned_cols=106 Identities=33% Similarity=0.461 Sum_probs=87.5
Q ss_pred cccccCcEEEeccCC--ceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEeeccCCccccccc
Q 000379 904 AKNLKDMVVLAIHTG--RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVN 981 (1604)
Q Consensus 904 ~~~l~~~vV~~~~~~--~~Y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~~ 981 (1604)
.+.++|+.|.+.|++ +.|.|.+|.++.+|.+.|+.. ++...|+++||+++||+.|.+|+||+|.++...+
T Consensus 26 ~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~-~g~~itv~eYf~~~Y~i~L~~p~~Pll~~~~~~~------- 97 (135)
T PF02170_consen 26 ERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDN-DGKEITVAEYFKEKYNIRLKYPDLPLLNVKSKKK------- 97 (135)
T ss_dssp HHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEET-TSEEEEHHHHHHHTCT---SSTTSEEEEECSTTT-------
T ss_pred HHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecC-CCceEEhHHHHHhhhhcccccCCCCeEEeccCCC-------
Confidence 346889999999988 899999999999999999864 4678999999999999999999999999874432
Q ss_pred cCCCCCCCCCCCCCCCCCCCCceeeeCcccceeecccHHHHHHHhhcHHHHHHHHH
Q 000379 982 FNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLES 1037 (1604)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~L~pel~~~~~ip~~~~~~~~~lPsi~~ri~~ 1037 (1604)
...+++|||+|.+.+++...|......||+|+|.+.
T Consensus 98 --------------------~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~ 133 (135)
T PF02170_consen 98 --------------------KQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFAC 133 (135)
T ss_dssp --------------------TTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHS
T ss_pred --------------------CceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHh
Confidence 023579999999999999999999999999999874
No 188
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.00 E-value=5.5e-10 Score=99.77 Aligned_cols=67 Identities=24% Similarity=0.404 Sum_probs=51.6
Q ss_pred chhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHH
Q 000379 1510 PRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIM 1589 (1604)
Q Consensus 1510 ~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~ 1589 (1604)
||+.|+|||+++++++|.|.+..+ .|+.|. +.|+|+|.+ .+...+.|.| +|||+||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~---------~~~~~~---~~f~~~~~i----~~~~~~~g~g-~sKk~Ak~~AA~~a 63 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEE---------GPSHHR---PRFICTVYI----DGKEYGEGEG-SSKKEAKQQAAKKA 63 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEE---------SSSSSS---EEEEEEEEE----TTEEEEEEEE-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEe---------CCCCCC---ceEEEEEEE----CCEEEeEecc-CCHHHHHHHHHHHH
Confidence 679999999999988776655554 344444 688888877 3455556666 67999999999999
Q ss_pred HHHH
Q 000379 1590 LHEL 1593 (1604)
Q Consensus 1590 l~~l 1593 (1604)
|+.|
T Consensus 64 l~~L 67 (67)
T PF00035_consen 64 LQKL 67 (67)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9986
No 189
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.97 E-value=6.3e-08 Score=116.00 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=82.1
Q ss_pred CCcEEEEEEchHHHHHHHHHHHhhC--CCCCC------------eeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC---c
Q 000379 413 TQVLCIIFVERIIAAKVVERFVKKV--PFLTH------------LTVAYLTGSTTSVDALTPKVQKEVLESFRGGK---V 475 (1604)
Q Consensus 413 ~~~~~IIFv~~r~ta~~L~~~L~~~--~~~~~------------~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~---~ 475 (1604)
.+.+.|||.+...+.+.|.++|.+. |.-.+ .....+.|. -+..+|+..+++|.+.- .
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~------t~a~~rekLinqfN~e~~lsW 791 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGT------TSAADREKLINQFNSEPGLSW 791 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCC------cccchHHHHHHhccCCCCcee
Confidence 4578999999999999999999763 21111 112233444 46788999999998642 3
Q ss_pred eEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce
Q 000379 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~ 521 (1604)
-+|++|....-|||+-..|-+|.||..|++.--.|.+-|+-|.|++
T Consensus 792 lfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~ 837 (1387)
T KOG1016|consen 792 LFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQ 837 (1387)
T ss_pred eeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCc
Confidence 5788999999999999999999999999999999999999999986
No 190
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.91 E-value=4.9e-07 Score=119.13 Aligned_cols=70 Identities=23% Similarity=0.144 Sum_probs=56.2
Q ss_pred CCCCCCcHHHHHHHHHhh----c-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 41 SINFIPRIYQLKVFEVAK----R-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l----~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
-..++||+.|.+++..+. + +.+++-+|||+|||+.+++++..... ..++++++.++|+.|.+|..++...
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~-----~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAR-----EEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHH-----HcCCcEEEECCCHHHHHHHHHhhcc
Confidence 346899999999998664 2 44899999999999999998776654 2336699999999999988777544
No 191
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.90 E-value=4.9e-08 Score=114.36 Aligned_cols=113 Identities=25% Similarity=0.320 Sum_probs=82.0
Q ss_pred cEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhC--CCceEEEEccccccccCCCC
Q 000379 415 VLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRG--GKVNLLFATDVIEEGMHVPN 492 (1604)
Q Consensus 415 ~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~--g~~~iLIaT~vleeGIDip~ 492 (1604)
.+++-|.. ...-.+...+.+. .+.++.++.|. ++++.|..--..|.+ ++++|||||++.+.|+|+ +
T Consensus 359 DCvV~FSk--k~I~~~k~kIE~~---g~~k~aVIYGs------LPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~ 426 (700)
T KOG0953|consen 359 DCVVAFSK--KDIFTVKKKIEKA---GNHKCAVIYGS------LPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-N 426 (700)
T ss_pred CeEEEeeh--hhHHHHHHHHHHh---cCcceEEEecC------CCCchhHHHHHHhCCCCCccceEEeeccccccccc-c
Confidence 34455543 2334444555553 24569999998 899999888889988 899999999999999999 6
Q ss_pred ccEEEEcCCC---------CCHHHHHHHhhhhcccCce----EEEEEeccCHHHHHHHHHHHH
Q 000379 493 CSYVIRFDLP---------KTVSSYIQSRGRARQHNSQ----FILMLERGNLKQRNKLFDIIR 542 (1604)
Q Consensus 493 ~nlVI~fD~p---------~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~~~~l~~~~~ 542 (1604)
++-||.|++- -+..+-.|-.|||||.|++ ++.-+. .++...+.+.++
T Consensus 427 IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~---~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 427 IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH---SEDLKLLKRILK 486 (700)
T ss_pred eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee---HhhHHHHHHHHh
Confidence 8889988764 3678889999999999986 333333 334445555543
No 192
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.88 E-value=1e-07 Score=127.19 Aligned_cols=141 Identities=18% Similarity=0.267 Sum_probs=98.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
++++|+--||||||+..+-++..+.+ ....+.|+|||.++.|-.|..++|..+........ ... +.+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~----~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-~~~-----s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLE----LPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-KAE-----STSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHh----ccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-ccc-----CHHHHH
Confidence 46899999999999999888877766 25667799999999999999999997653222111 211 223334
Q ss_pred HhcC--CCcEEEEcHHHHHHHHHhc--CcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCCCCCC
Q 000379 140 KEIN--KNDVLVMTPQILLDALRKA--FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKG 215 (1604)
Q Consensus 140 ~~~~--~~~ViV~T~q~Ll~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~ 215 (1604)
..++ ...|||+|-|.|-...... ...-.+--++|+||||+.-.. -....|+..+ ++...+|+|+||+....
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G-~~~~~~~~~~----~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG-ELAKLLKKAL----KKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc-HHHHHHHHHh----ccceEEEeeCCcccccc
Confidence 4443 3489999999998777553 111222337999999998533 3344444433 34678999999998654
No 193
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.88 E-value=8.7e-09 Score=129.46 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=89.5
Q ss_pred HHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc------C
Q 000379 50 QLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT------D 118 (1604)
Q Consensus 50 Q~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~------~ 118 (1604)
|.++++.+. ++.+++.++||+|||+++++++...+. ...++++||++||++|.+|+.+.+.... +
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~----~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~ 77 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLK----ERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGP 77 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHH----hccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCC
Confidence 777776664 366889999999999999998766543 1234679999999999999999877543 3
Q ss_pred CcEEEEECCCCCC---------------------ccc----------------------------------------h--
Q 000379 119 FEVEEYYGAKGVD---------------------EWD----------------------------------------S-- 135 (1604)
Q Consensus 119 ~~v~~~~G~~~~~---------------------~~~----------------------------------------~-- 135 (1604)
+++..+.|..+.- .|. .
T Consensus 78 i~~~~lkGr~nYlCl~rl~~~l~~~~~~~~~~i~~W~~~T~~~~~~~~~~~~~~~~~~~~~~~tGD~~el~~~~~~~~~~ 157 (636)
T TIGR03117 78 VQAGFFPGSQEFVSPGALQELLDQSGYDKDPAVQLWIGQGGPLIHEAALIRCMSDAPTKMHWMTHDLKAVATLLNRQDDV 157 (636)
T ss_pred eeEEEEECCcccccHHHHHHHhcccchhHHHHHHHHHhcCCccccccchhccccchhhccCCCCCCHhhccCCcCcchhh
Confidence 4555555532100 010 0
Q ss_pred -------------hHHHHh---cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 136 -------------QCWQKE---INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 136 -------------~~w~~~---~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
...+.. ...++|||+++..|+..+..+.--+...+.||||||||+.
T Consensus 158 ~~~~~~~~~~~~~~~aR~~~~~a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~ 219 (636)
T TIGR03117 158 TLAIREDDEDKRLVESREYEAEARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFE 219 (636)
T ss_pred hccccCCCcccHHHHHHHHhhccccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchH
Confidence 001111 4678999999999988765544345668999999999985
No 194
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.83 E-value=3.8e-07 Score=115.80 Aligned_cols=126 Identities=20% Similarity=0.117 Sum_probs=88.1
Q ss_pred CCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHH---HhhcCC
Q 000379 43 NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI---RVHTDF 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i---~~~~~~ 119 (1604)
.+.|++-|.-..- ++.++-|+-|.||-|||++|.+++.-..- .++.|-+++++..|+.+-++.+ -+++|+
T Consensus 74 G~r~ydvQlig~l-~L~~G~IaEm~TGEGKTL~a~l~ayl~aL------~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 74 GLRHFDVQLIGGL-VLNDGKIAEMKTGEGKTLVATLPAYLNAL------TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred CCCCCchHhhhhH-hhcCCccccccCCCCchHHHHHHHHHHHh------cCCceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 4566777766542 34678899999999999999998743221 3445899999999998755554 557899
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHH-HHHHHhc------CcCccceeEEEEeCccccc
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALRKA------FLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~L-l~~l~~~------~~~l~~i~llI~DEaH~~~ 181 (1604)
.|+.+.+++.... ++..=.++|+.+|...| .+.|+.. ......+.+.|+||++.+.
T Consensus 147 svg~i~~~~~~~e------rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 147 TVGLIQEGMSSEE------RKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred ceeeeCCCCChHH------HHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9999888765443 12222579999999755 2333322 1234568899999999886
No 195
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.83 E-value=1.6e-07 Score=119.02 Aligned_cols=145 Identities=21% Similarity=0.268 Sum_probs=107.9
Q ss_pred cHHHHHHHHHhh--ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH----hhcCCc
Q 000379 47 RIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR----VHTDFE 120 (1604)
Q Consensus 47 r~yQ~e~l~~~l--~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~----~~~~~~ 120 (1604)
.+.|.+.+.-.- +.|++|.+|+|||||.+|-+++.. .....++++++|.-+.+.-++..+. ..+|..
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~ 1217 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLR 1217 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-------CccceEEEEecchHHHHHHHHHHHHHhhccccCce
Confidence 566777776664 388999999999999999887654 3456779999999887766555544 456889
Q ss_pred EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCCh-----HHHHHHHHHh
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP-----YTKIMKEFYH 195 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~-----~~~im~~~~~ 195 (1604)
+..+.|..+.+. +.+...+|+++||+.+-.. . ....+++.|.||.|...+.+. ... |+.+..
T Consensus 1218 ~~~l~ge~s~~l-------kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~ 1284 (1674)
T KOG0951|consen 1218 IVKLTGETSLDL-------KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIAS 1284 (1674)
T ss_pred EEecCCccccch-------HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHH
Confidence 999999888774 4566889999999998544 2 567899999999999986432 111 443334
Q ss_pred hcCCCCcEEEEeccCC
Q 000379 196 KSDNKPKVFGMTASPV 211 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~ 211 (1604)
+..+.-|+++||-+..
T Consensus 1285 q~~k~ir~v~ls~~la 1300 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLA 1300 (1674)
T ss_pred HHHhheeEEEeehhhc
Confidence 4456778999987754
No 196
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.82 E-value=9.2e-08 Score=110.02 Aligned_cols=152 Identities=17% Similarity=0.080 Sum_probs=88.0
Q ss_pred cHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEE
Q 000379 47 RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125 (1604)
Q Consensus 47 r~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 125 (1604)
..|+.+.++.... +-++++++||||||...--...+... .. .+-|...-|.+.-+.+.+.......++..+.-+
T Consensus 49 w~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~---~~--~~~v~CTQprrvaamsva~RVadEMDv~lG~EV 123 (699)
T KOG0925|consen 49 WEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYEL---SH--LTGVACTQPRRVAAMSVAQRVADEMDVTLGEEV 123 (699)
T ss_pred HHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHH---hh--ccceeecCchHHHHHHHHHHHHHHhccccchhc
Confidence 4455555555543 55678999999999754443333221 11 133777889988888888888887777666555
Q ss_pred CCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-ChHHHHHHHHHhhcCCCCcEE
Q 000379 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEFYHKSDNKPKVF 204 (1604)
Q Consensus 126 G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im~~~~~~~~~~p~iL 204 (1604)
|-.- .. .+..-.+.=.-.||-+.|+...... -.+++++.||+||||.-.-. .-.-.++++..... +.-+++
T Consensus 124 GysI-rf-----EdC~~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~v 195 (699)
T KOG0925|consen 124 GYSI-RF-----EDCTSPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLV 195 (699)
T ss_pred cccc-cc-----cccCChhHHHHHhcchHHHHHHhhC-cccccccEEEechhhhhhHHHHHHHHHHHHHHhhC-CCceEE
Confidence 5321 10 0000001111234555554433322 24678999999999986421 12333445444333 357899
Q ss_pred EEeccCC
Q 000379 205 GMTASPV 211 (1604)
Q Consensus 205 gLTATP~ 211 (1604)
-||||..
T Consensus 196 vmSatl~ 202 (699)
T KOG0925|consen 196 VMSATLD 202 (699)
T ss_pred Eeecccc
Confidence 9999954
No 197
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.82 E-value=3.5e-08 Score=114.92 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=56.5
Q ss_pred CCCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 41 SINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
...++||+.|.++++.+. ++++|+.+|||+|||+.+++++...+.......++.++++.++|..+..|....+++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 356789999999887764 478999999999999999998755443111110123699999999998887777765
Q ss_pred h
Q 000379 116 H 116 (1604)
Q Consensus 116 ~ 116 (1604)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 198
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.82 E-value=3.5e-08 Score=114.92 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=56.5
Q ss_pred CCCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 41 SINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
...++||+.|.++++.+. ++++|+.+|||+|||+.+++++...+.......++.++++.++|..+..|....+++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 356789999999887764 478999999999999999998755443111110123699999999998887777765
Q ss_pred h
Q 000379 116 H 116 (1604)
Q Consensus 116 ~ 116 (1604)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 199
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=98.81 E-value=9.3e-10 Score=111.63 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=61.6
Q ss_pred CHHHHHHHHccCCCCC--CCchH----------------HHHHHhcccChHHHHHHHHHHHcCC---------CCCCCCC
Q 000379 1267 VKFLLQEAITHASVQE--FYCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFP---------KPGETTD 1319 (1604)
Q Consensus 1267 ~~~LL~~AlTH~S~~~--~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~ 1319 (1604)
|+.||.+||||+||.. ..+|| +||+..+. +++.++..+.-+++-. ...+.-.
T Consensus 1 ~~~Ll~~alTH~S~~~~~~~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~ 79 (128)
T PF14622_consen 1 DDELLLQALTHKSYAHERKPNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDKLIR 79 (128)
T ss_dssp SHHHHHHHTB-HHHHHHTCB-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B
T ss_pred CHHHHHHHhcCccccccccCccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHHHHH
Confidence 6899999999999975 67888 77888555 6777776654444310 0000000
Q ss_pred ------CCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhcc
Q 000379 1320 ------SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSP 1362 (1604)
Q Consensus 1320 ------~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~~ 1362 (1604)
.......+|+++|+|||++||||+|+|+ +.+.+|+...+-|
T Consensus 80 ~~~~~~~~~~~~~~~vlad~feAliGAiyld~G~--~~a~~~i~~~i~~ 126 (128)
T PF14622_consen 80 WGPGEEKSGGSGSDKVLADVFEALIGAIYLDSGF--EAARKFIQKLILP 126 (128)
T ss_dssp --HHHHHTTGGG-HHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHH--
T ss_pred hCccHhhcCCCCCccHHHhHHHHHHHHHHHHcCH--HHHHHHHHHHhcc
Confidence 0123456889999999999999999999 8888888876654
No 200
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.71 E-value=1e-06 Score=111.66 Aligned_cols=126 Identities=19% Similarity=0.093 Sum_probs=87.7
Q ss_pred CCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHH---HHHHHHhhcCC
Q 000379 43 NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ---QYDVIRVHTDF 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q---~~~~i~~~~~~ 119 (1604)
.+.|++.|.-.- .++.+.-|+-|.||-|||++|.+++.-..- .++.|-+++++--|+.. |...+.+++|+
T Consensus 83 G~r~ydVQliGg-l~Lh~G~IAEM~TGEGKTL~atlpaylnAL------~GkgVhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 83 GMRHFDVQLIGG-MVLHEGQIAEMKTGEGKTLVATLPSYLNAL------TGKGVHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred CCCcchhHHHhh-hhhcCCceeeecCCCChhHHHHHHHHHHhh------cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 344455554332 234678899999999999999987654322 33448888999999985 55555668899
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHH-----HHHHHh--cCcCccceeEEEEeCccccc
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-----LDALRK--AFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~L-----l~~l~~--~~~~l~~i~llI~DEaH~~~ 181 (1604)
.|+.+.+++.... ++..=.+||+.+|...| .+.+.. +......+++.|+||++.+.
T Consensus 156 tvg~i~~~~~~~e------rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 156 SVGLIQQDMSPEE------RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred eEEEECCCCChHH------HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9999887664432 22233789999999877 444332 22345678999999999986
No 201
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=98.70 E-value=6.9e-08 Score=100.33 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=58.8
Q ss_pred CCCchHHHHHHHHhcCCcceeeeeeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000379 1370 ELPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1370 ~~~p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
.+||++.||||||+.+....+.....|+. +.|++.|.++|. ..++|.|.|||+|++.||+.||..|..
T Consensus 108 ~kNpKS~LQE~~Qk~~~~~y~~i~~~Gp~H~p~F~v~V~I~g~-~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 108 DKNPCTVINEYCQITSRDWSINITSSGPSHSPTFTASVIISGI-KFKPAIGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred cCChhHHHHHHHHHhCCCeEEEEEeeCCCCCceEEEEEEECCE-EEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 36999999999999887654444556765 889999999996 888999999999999999999999976
No 202
>smart00535 RIBOc Ribonuclease III family.
Probab=98.70 E-value=1.6e-08 Score=103.51 Aligned_cols=94 Identities=27% Similarity=0.362 Sum_probs=69.6
Q ss_pred HHHHHHHccCCCCCC-CchH----------------HHHHHhcccChHHHHHHHHHHHcCCCC---------------CC
Q 000379 1269 FLLQEAITHASVQEF-YCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFPKP---------------GE 1316 (1604)
Q Consensus 1269 ~LL~~AlTH~S~~~~-~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~~~---------------~~ 1316 (1604)
.||.+||||+|+... .+|| +++..+|..+++.++.++..+.+-... ..
T Consensus 1 ~ll~~alth~s~~~~~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~~ 80 (129)
T smart00535 1 SLLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLGR 80 (129)
T ss_pred CHHHHHhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccCc
Confidence 379999999999874 4888 788899999888887666555541000 00
Q ss_pred CCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhcccc
Q 000379 1317 TTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1364 (1604)
Q Consensus 1317 ~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~~~i 1364 (1604)
..........+|+++|+|||+|||||+|+|+ +.+++++..++.|.+
T Consensus 81 ~~~~~~~~~~~k~~a~~~eAliGAi~ld~g~--~~~~~~i~~~~~~~~ 126 (129)
T smart00535 81 GEAISGGRDKPSILADVFEALIGAIYLDSGL--EAAREFIRDLLGPRL 126 (129)
T ss_pred hHhhcCCcccchHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHh
Confidence 0000112357899999999999999999986 899999998888765
No 203
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=98.69 E-value=6.5e-08 Score=99.46 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=58.0
Q ss_pred CCchHHHHHHHHhcCCcceeee-eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000379 1371 LPPLRELIELCDSLGYFVKENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1371 ~~p~~~L~e~~~~~~~~~~~~~-~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
.|||+.||||||+.+....+.. ...|+. +.|++.|.++|. ..+.|.|.|||+|+++||+.||+.|..
T Consensus 108 ~DpKS~LQE~~Q~~~~~l~Y~li~~~GpdH~~~Ftv~V~V~g~-~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 108 LNPVSAVNEFCMRTHRPLEFCETRSGGHDHCPLFTCTIVVSGK-VVATASGCSKKLARHAACADALTILIN 177 (183)
T ss_pred CCccHHHHHHHHhcCCCCeEEEEEeECCCCCceEEEEEEECCE-EEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 6999999999999887665433 345665 899999999997 889999999999999999999999976
No 204
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=98.65 E-value=1.8e-07 Score=83.50 Aligned_cols=63 Identities=27% Similarity=0.294 Sum_probs=53.9
Q ss_pred chHHHHHHHHhcCCcceee-eeeeCce---EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHh
Q 000379 1373 PLRELIELCDSLGYFVKEN-CTLKGEM---VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1436 (1604)
Q Consensus 1373 p~~~L~e~~~~~~~~~~~~-~~~~g~~---~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L 1436 (1604)
|++.|+|+|++.+..++++ ....|+. +.|.|.|+++|. .++.|.|.|||+||..||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~-~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGK-EYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTE-EEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCE-EEeEeccCCHHHHHHHHHHHHHHhC
Confidence 7899999999999888744 4344432 699999999996 7779999999999999999999986
No 205
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=98.65 E-value=2.6e-08 Score=102.65 Aligned_cols=96 Identities=24% Similarity=0.393 Sum_probs=71.7
Q ss_pred HHHHHHHccCCCCCC---CchH----------------HHHHHhcccChHHHHHHHHHHHcCCCC---------CC---C
Q 000379 1269 FLLQEAITHASVQEF---YCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFPKP---------GE---T 1317 (1604)
Q Consensus 1269 ~LL~~AlTH~S~~~~---~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~~~---------~~---~ 1317 (1604)
.||.+||||+|+... .+|| +|+..+|..+++.++.++..+.+-... .+ .
T Consensus 1 ~ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~ 80 (133)
T cd00593 1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRL 80 (133)
T ss_pred CHHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhcc
Confidence 378999999999873 6888 778888888888888776666541000 00 0
Q ss_pred C---CCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhccccCC
Q 000379 1318 T---DSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTP 1366 (1604)
Q Consensus 1318 ~---~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~~~i~~ 1366 (1604)
. ........+|+++|+|||+|||||+|+|. +.+++++..++.|.++.
T Consensus 81 ~~~~~~~~~~~~~k~~ad~~eAliGAiyld~g~--~~~~~~i~~~~~~~~~~ 130 (133)
T cd00593 81 GKGEEKSGGRLRPKILADVFEALIGAIYLDGGF--EAARKFLLRLLGPLIEE 130 (133)
T ss_pred CchHhhcCCcccccHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhh
Confidence 0 00113568999999999999999999998 88999999988877643
No 206
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=6.6e-08 Score=114.41 Aligned_cols=100 Identities=23% Similarity=0.399 Sum_probs=80.7
Q ss_pred cccCcEEEeccCCceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEeeccCCccccccccCCC
Q 000379 906 NLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDG 985 (1604)
Q Consensus 906 ~l~~~vV~~~~~~~~Y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~~~~~~ 985 (1604)
.+.|++|++.|||+.|.+++|+++.+|.|.|... ++..||.|||+++|++.|++.+||+|..++-.++.
T Consensus 283 ~~~glivLT~YNNktyriddvD~~~tP~stF~k~--dgeIs~veYyk~qYni~I~dl~QPlliS~~k~K~~--------- 351 (845)
T KOG1042|consen 283 NVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKD--DGEISFVEYYKKQYNIEITDLNQPLLISEPKDKRP--------- 351 (845)
T ss_pred HhcceEEEEecCCceeeeeccccCcCccceeeec--CceeeHhHHHHHhcCeEEeeCCcceEeccCcccCC---------
Confidence 4679999999999999999999999999999864 45799999999999999999999999876544311
Q ss_pred CCCCCCCCCCCCCCCCCceeeeCcccceeecccHHHHHHHhhc
Q 000379 986 GGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLL 1028 (1604)
Q Consensus 986 ~~~~~~~~~~~~~~~~~~~~~L~pel~~~~~ip~~~~~~~~~l 1028 (1604)
.+ ......+|+||||..+++...+-.-+.++
T Consensus 352 ~g------------~~~q~~~lIPELc~~TGLtd~mr~dF~~M 382 (845)
T KOG1042|consen 352 KG------------EPPQLAMLIPELCFLTGLTDEMRSDFQLM 382 (845)
T ss_pred CC------------CCccceeeehhhhhccCCcHHHHhhHHHH
Confidence 00 11233579999999999988776555433
No 207
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=98.59 E-value=1.7e-07 Score=83.62 Aligned_cols=63 Identities=27% Similarity=0.319 Sum_probs=53.3
Q ss_pred chHHHHHHHHhcCCcceeeeee-eCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHh
Q 000379 1373 PLRELIELCDSLGYFVKENCTL-KGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1436 (1604)
Q Consensus 1373 p~~~L~e~~~~~~~~~~~~~~~-~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L 1436 (1604)
|++.|+|+|++.++.+.+.... .|+. +.|+|.|.++|. ..+.|.|.|||+||+.||+.||+.|
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~-~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGGE-YTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECCE-EEEEeccCCHHHHHHHHHHHHHHhc
Confidence 7899999999999854444443 4543 689999999986 7789999999999999999999887
No 208
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=98.57 E-value=2.6e-07 Score=82.74 Aligned_cols=64 Identities=28% Similarity=0.321 Sum_probs=53.5
Q ss_pred CchHHHHHHHHhcCCcce-eee-eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHh
Q 000379 1372 PPLRELIELCDSLGYFVK-ENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1436 (1604)
Q Consensus 1372 ~p~~~L~e~~~~~~~~~~-~~~-~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L 1436 (1604)
||++.|+|+|++++...+ +.. ...|+. ..|+|.|.++|. ..+.|.|.|||+||+.||+.||+.|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~-~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGK-ITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCE-EEEEeecCCHHHHHHHHHHHHHHhC
Confidence 699999999999865544 444 345554 789999999995 8899999999999999999999875
No 209
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.41 E-value=1.3e-05 Score=102.78 Aligned_cols=111 Identities=14% Similarity=0.216 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC-
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK- 474 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~- 474 (1604)
..|..++++-+.... ..+..+||-+.+....+.|.++|.. .++....+.... ..++ .+++. +.|.
T Consensus 611 ~eK~~Aii~ei~~~~-~~GrPVLVGT~SVe~SE~lS~~L~~----~gI~H~VLNAK~------h~~E-AeIVA--~AG~~ 676 (1112)
T PRK12901 611 REKYNAVIEEITELS-EAGRPVLVGTTSVEISELLSRMLKM----RKIPHNVLNAKL------HQKE-AEIVA--EAGQP 676 (1112)
T ss_pred HHHHHHHHHHHHHHH-HCCCCEEEEeCcHHHHHHHHHHHHH----cCCcHHHhhccc------hhhH-HHHHH--hcCCC
Confidence 477877777665543 3456799999999999999999988 355555555541 1111 23333 3443
Q ss_pred ceEEEEccccccccCCC--------CccEEEEcCCCCCHHHHHHHhhhhcccCc
Q 000379 475 VNLLFATDVIEEGMHVP--------NCSYVIRFDLPKTVSSYIQSRGRARQHNS 520 (1604)
Q Consensus 475 ~~iLIaT~vleeGIDip--------~~nlVI~fD~p~s~~syiQr~GRA~R~gs 520 (1604)
-.|-|||+++++|-||. +==+||--..+.|.+---|-+|||||.|.
T Consensus 677 GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGD 730 (1112)
T PRK12901 677 GTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGD 730 (1112)
T ss_pred CcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCC
Confidence 46899999999999997 22368888899999999999999999994
No 210
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.40 E-value=2.2e-05 Score=98.82 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=83.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHHh
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKE 141 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~~ 141 (1604)
.+|-+|+|||||...+-.+++.+. .+..+++++..+++|+.+.++.++..---....+....+.. . .
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~-----~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~-------i-~ 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK-----NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYI-------I-D 118 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc-----CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccc-------c-c
Confidence 478899999999877666665442 35667999999999999999999754211111222211100 0 0
Q ss_pred cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHH-------HHHhhcCCCCcEEEEeccCC
Q 000379 142 INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMK-------EFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 142 ~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~-------~~~~~~~~~p~iLgLTATP~ 211 (1604)
...++-+++..+.|..... -.+.++++||+||+-...+. -|..-|+ .+.+.....++++.|-|+..
T Consensus 119 ~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~q-L~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 119 GRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQ-LFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred ccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHH-HhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 0135666777676644432 13567899999999777643 3333333 22233457799999999854
No 211
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.32 E-value=3.3e-06 Score=109.28 Aligned_cols=141 Identities=23% Similarity=0.265 Sum_probs=84.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH-----hhc-----C--CcEEEEECCC
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR-----VHT-----D--FEVEEYYGAK 128 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~-----~~~-----~--~~v~~~~G~~ 128 (1604)
|+.+.|+||||||++++..|.++.. ..+..+++|+||+++..+...+.+. .++ + +....+.++.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~----~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQ----KYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH----HcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 6789999999999999999988865 3345679999999999888776665 232 1 2333333322
Q ss_pred CCC----cc--chhHHHHh----cCCCcEEEEcHHHHHHHHH----------hcC-cCccce----eEEEEeCcccccCC
Q 000379 129 GVD----EW--DSQCWQKE----INKNDVLVMTPQILLDALR----------KAF-LSLDIV----CFIVIDECHHATGN 183 (1604)
Q Consensus 129 ~~~----~~--~~~~w~~~----~~~~~ViV~T~q~Ll~~l~----------~~~-~~l~~i----~llI~DEaH~~~~~ 183 (1604)
... .. ....+-.. -...+|+|+|.|.|..... .+. ..++.+ -+||+||.||+.+.
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 100 00 00011110 1146899999998854221 111 222222 28999999999652
Q ss_pred -ChHHHHHHHHHhhcCCCC-cEEEEeccCCC
Q 000379 184 -HPYTKIMKEFYHKSDNKP-KVFGMTASPVV 212 (1604)
Q Consensus 184 -~~~~~im~~~~~~~~~~p-~iLgLTATP~~ 212 (1604)
..+..| .. -.| -+|..|||-..
T Consensus 217 ~k~~~~i-~~------lnpl~~lrysAT~~~ 240 (986)
T PRK15483 217 NKFYQAI-EA------LKPQMIIRFGATFPD 240 (986)
T ss_pred hHHHHHH-Hh------cCcccEEEEeeecCC
Confidence 234333 22 234 46889999643
No 212
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=98.31 E-value=1.2e-06 Score=87.13 Aligned_cols=65 Identities=31% Similarity=0.479 Sum_probs=53.7
Q ss_pred cccCcEEEeccC--CceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEeecc
Q 000379 906 NLKDMVVLAIHT--GRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQS 972 (1604)
Q Consensus 906 ~l~~~vV~~~~~--~~~Y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~ 972 (1604)
.+.++.|.+.|+ ++.|.|.++.+..++.. |+.. ++...||++||+++||+.+++++||+|.+...
T Consensus 32 ~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~-~~~~isv~dYf~~kY~~~l~~p~~Pll~~~~~ 98 (115)
T cd02825 32 ELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHS-DGKEITFADYFKERYNLTLTDLNQPLLIVKFS 98 (115)
T ss_pred HcCCCEEEEecCCCceEEEEeeEECCCChhh-eecC-CCCEEEHHHHHHHHcCCcccCCCCCEEEecCc
Confidence 567888999987 57999999988666655 7633 34578999999999999999999999998743
No 213
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.21 E-value=1.1e-05 Score=91.28 Aligned_cols=127 Identities=20% Similarity=0.181 Sum_probs=85.1
Q ss_pred CCCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh---hcC
Q 000379 42 INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---HTD 118 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---~~~ 118 (1604)
..+.|++-|.-+.-.+.+ +-|+.+.||=|||+++.+++....- .++.|=|++.+..|+..-++.++. ++|
T Consensus 74 ~g~~p~~vQll~~l~L~~-G~laEm~TGEGKTli~~l~a~~~AL------~G~~V~vvT~NdyLA~RD~~~~~~~y~~LG 146 (266)
T PF07517_consen 74 LGLRPYDVQLLGALALHK-GRLAEMKTGEGKTLIAALPAALNAL------QGKGVHVVTSNDYLAKRDAEEMRPFYEFLG 146 (266)
T ss_dssp TS----HHHHHHHHHHHT-TSEEEESTTSHHHHHHHHHHHHHHT------TSS-EEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcccHHHHhhhhhccc-ceeEEecCCCCcHHHHHHHHHHHHH------hcCCcEEEeccHHHhhccHHHHHHHHHHhh
Confidence 356788888887755544 4599999999999999887644332 345588889999999876666554 679
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHH-HHHHhcC------cCccceeEEEEeCccccc
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL-DALRKAF------LSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll-~~l~~~~------~~l~~i~llI~DEaH~~~ 181 (1604)
+.++.+++++..+. +...-.++|+.+|...|. +.|+... .....+.++|+|||+.+.
T Consensus 147 lsv~~~~~~~~~~~------r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 147 LSVGIITSDMSSEE------RREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp --EEEEETTTEHHH------HHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hccccCccccCHHH------HHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999876432 111225789999998874 4444321 124578899999999886
No 214
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.01 E-value=2.4e-05 Score=89.16 Aligned_cols=70 Identities=21% Similarity=0.226 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHhhccC--EEEEeCCCChHHHHHHHHHHHHHHH--HhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 46 PRIYQLKVFEVAKRRN--TIAVLETGAGKTMIAVMLIKDIAQA--IKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 46 pr~yQ~e~l~~~l~~n--~Iv~~~TGsGKTliailli~~~~~~--~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
+.+.|.+++..++..+ ++|.+|.|||||.+...++..++.. ......++++++++|+..-+++..+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 5789999999999755 7899999999998777776666321 01244667799999999999999999887
No 215
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.95 E-value=3.7e-05 Score=101.52 Aligned_cols=71 Identities=21% Similarity=0.198 Sum_probs=56.3
Q ss_pred CCCCC-cHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 42 INFIP-RIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 42 ~~~~p-r~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
..+.+ ||.|.+.++.+. ++++++-+|||+|||++.+........ ..+...+++|.+.|..=..|..+++++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~---~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQ---EKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHH---hccccccEEEEcccchHHHHHHHHHHh
Confidence 45666 999999998775 488999999999999988876655433 122335799999999988999999987
No 216
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.95 E-value=5.8e-06 Score=103.47 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=96.6
Q ss_pred CCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 44 FIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
-.+-+||.|.+.++. +-++|+++++|.|||..++..+..+.. ....+.-.|+++|.-..+. |-.++..+..
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~---~~~~~~P~Lv~ap~sT~~n-we~e~~~wap 369 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPK---EIHSPGPPLVVAPLSTIVN-WEREFELWAP 369 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeeccc---ccCCCCCceeeccCccccC-CCCchhccCC
Confidence 456799999998875 478999999999999987776655544 2222233688888755544 5556655543
Q ss_pred -CcEEEEECCCCCCc------cch-----------hHH-HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccc
Q 000379 119 -FEVEEYYGAKGVDE------WDS-----------QCW-QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH 179 (1604)
Q Consensus 119 -~~v~~~~G~~~~~~------~~~-----------~~w-~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~ 179 (1604)
+.+..+.|....+. |.. ..| ....-..+|.+.+|+..... ...+..-++.++|.||+|+
T Consensus 370 ~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~--~~il~~v~w~~livde~~r 447 (696)
T KOG0383|consen 370 SFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEID--QSILFSVQWGLLIVDEAHR 447 (696)
T ss_pred CcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccC--HHHHhhhhcceeEeechhh
Confidence 44444554322110 000 111 11223467777777765322 2233445789999999999
Q ss_pred ccCCCh-HHHHHHHHHhhcCCCCcEEEEeccCCCCC
Q 000379 180 ATGNHP-YTKIMKEFYHKSDNKPKVFGMTASPVVRK 214 (1604)
Q Consensus 180 ~~~~~~-~~~im~~~~~~~~~~p~iLgLTATP~~~~ 214 (1604)
+..+.. ..+.+. ....-+.+.+|+||..++
T Consensus 448 lkn~~s~~f~~l~-----~~~~~~~~lltgtPlqnn 478 (696)
T KOG0383|consen 448 LKNKQSKRFRVLT-----AYPIDSKLLLTGTPLQNN 478 (696)
T ss_pred cccchhhhhhhcc-----ccccchhhhccCCcchhh
Confidence 976521 111111 123356789999998765
No 217
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=97.91 E-value=2e-05 Score=94.97 Aligned_cols=136 Identities=17% Similarity=0.214 Sum_probs=88.8
Q ss_pred eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCcCCCccc-cCCCCCCCCCc
Q 000379 1393 TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCR-QTTKEDLPEPP 1469 (1604)
Q Consensus 1393 ~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 1469 (1604)
.+.|+. +.|.+.|.++|..+. +|.|+.+||+.|++.+.+.... .+..... +.+++..++..
T Consensus 16 ~q~~p~~~p~~~~~~~v~~~~~~-------~k~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 79 (542)
T KOG2777|consen 16 SQTGPVHAPLFPFSVEVNGQEFP-------KKKAKQRAAEKALRVFLQFPEA---------HLSMGGTEGVNEDLTSDQA 79 (542)
T ss_pred cccCCCCCCcccceEEecccccc-------cccccchhhhHHHHHHhhcCCc---------ccccCCCCccccccchhhh
Confidence 345554 678899999987433 9999999999999999873111 0000000 00000000000
Q ss_pred ccccccCccccccCCCcccccccccCCCccccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccc
Q 000379 1470 SCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRT 1549 (1604)
Q Consensus 1470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~ 1549 (1604)
+ +. ... -....||.+.|+|+.+ -|.|.++.+ .||.|+
T Consensus 80 -------------------~---~~-----~~~-~~~~~npv~ll~e~~~-----~~~~~~~~~---------~~~~~~- 116 (542)
T KOG2777|consen 80 -------------------D---AF-----LSL-GKEGKNPVSLLHELAN-----GLFFDFVNE---------SGPQHA- 116 (542)
T ss_pred -------------------H---HH-----Hhh-hhccCCchHHHHHHhc-----ccceeeecc---------CCCCCC-
Confidence 0 00 000 0014788999999997 678999988 899999
Q ss_pred cceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHHHHHH
Q 000379 1550 GFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELER 1595 (1604)
Q Consensus 1550 ~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~l~~l~~ 1595 (1604)
+.|+|.|+|. |. .+.|. +.|||.||+.||..||+.|..
T Consensus 117 --~~F~~~~~vd----g~-~~~~~-~~sKk~ak~~aa~~al~~l~~ 154 (542)
T KOG2777|consen 117 --PKFVMSVVVD----GR-WFEGG-GRSKKEAKQEAAMAALQVLFK 154 (542)
T ss_pred --ceEEEEEEEC----CE-EccCC-CcchHHHHHHHHHHHHHHHHh
Confidence 8999999983 32 24455 477999999999999998854
No 218
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.84 E-value=0.00015 Score=82.13 Aligned_cols=156 Identities=19% Similarity=0.107 Sum_probs=94.1
Q ss_pred CCCCcHHHHHHHHHhh-----------ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH
Q 000379 43 NFIPRIYQLKVFEVAK-----------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-----------~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
.-.+..-|.|++-.+- +...++.+.||.||..+...+|.+-.. ++. ++.|++..+..|.....+
T Consensus 35 ~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l----~Gr-~r~vwvS~s~dL~~Da~R 109 (303)
T PF13872_consen 35 SGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL----RGR-KRAVWVSVSNDLKYDAER 109 (303)
T ss_pred cccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH----cCC-CceEEEECChhhhhHHHH
Confidence 3456889999887662 356789999999999877666665433 233 346777777789887777
Q ss_pred HHHhhcC--CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc---CcCc--------cce-eEEEEeCc
Q 000379 112 VIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA---FLSL--------DIV-CFIVIDEC 177 (1604)
Q Consensus 112 ~i~~~~~--~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~---~~~l--------~~i-~llI~DEa 177 (1604)
.++..-. +.+..+.. |... ...--...|+++||..|...-..+ .-.+ .++ .+||||||
T Consensus 110 Dl~DIG~~~i~v~~l~~------~~~~--~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEc 181 (303)
T PF13872_consen 110 DLRDIGADNIPVHPLNK------FKYG--DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDEC 181 (303)
T ss_pred HHHHhCCCcccceechh------hccC--cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccc
Confidence 7775432 22222211 1000 001124579999999997764321 1111 122 49999999
Q ss_pred ccccCCCh-------HHHHHHHHHhhcCCCCcEEEEeccCCC
Q 000379 178 HHATGNHP-------YTKIMKEFYHKSDNKPKVFGMTASPVV 212 (1604)
Q Consensus 178 H~~~~~~~-------~~~im~~~~~~~~~~p~iLgLTATP~~ 212 (1604)
|++.+... ......++- ..-+..|++-+|||...
T Consensus 182 H~akn~~~~~~~~sk~g~avl~LQ-~~LP~ARvvY~SATgas 222 (303)
T PF13872_consen 182 HKAKNLSSGSKKPSKTGIAVLELQ-NRLPNARVVYASATGAS 222 (303)
T ss_pred hhcCCCCccCccccHHHHHHHHHH-HhCCCCcEEEecccccC
Confidence 99976532 111222221 22245689999999653
No 219
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.84 E-value=2.1e-05 Score=101.19 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=99.9
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHH--------HHhh----CCCCeEEEEEecChhhHHHHHHHHHhhcC--CcEEEEE
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQ--------AIKS----NGFKKLIIFLAPTVHLVHQQYDVIRVHTD--FEVEEYY 125 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~--------~~~~----~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~--~~v~~~~ 125 (1604)
+.++++...|.|||..-+.+...... .... ...-+.+|||||. ++..||..+|..+++ ++|..|.
T Consensus 375 ~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y~ 453 (1394)
T KOG0298|consen 375 KRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLYF 453 (1394)
T ss_pred cceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEEe
Confidence 55788899999999976665433211 0001 1123458999998 888999999999984 4677776
Q ss_pred CCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCc--------------C----ccce--eEEEEeCcccccCCCh
Q 000379 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL--------------S----LDIV--CFIVIDECHHATGNHP 185 (1604)
Q Consensus 126 G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~--------------~----l~~i--~llI~DEaH~~~~~~~ 185 (1604)
|-.. ..|... ..+.++||||+||.+|.+.+.|... . +-++ =-|++|||+..-....
T Consensus 454 Girk-~~~~~~---~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS 529 (1394)
T KOG0298|consen 454 GIRK-TFWLSP---FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSS 529 (1394)
T ss_pred chhh-hcccCc---hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHH
Confidence 6433 334433 4566899999999999988876511 1 1111 1389999999987766
Q ss_pred HHHHHHHHHhhcCCCCcEEEEeccCCCC
Q 000379 186 YTKIMKEFYHKSDNKPKVFGMTASPVVR 213 (1604)
Q Consensus 186 ~~~im~~~~~~~~~~p~iLgLTATP~~~ 213 (1604)
+..-|...+ .+-...+.|+||+.+
T Consensus 530 ~~a~M~~rL----~~in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 530 AAAEMVRRL----HAINRWCVTGTPIQK 553 (1394)
T ss_pred HHHHHHHHh----hhhceeeecCCchhh
Confidence 766666443 345779999999965
No 220
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.80 E-value=4.7e-05 Score=94.17 Aligned_cols=209 Identities=16% Similarity=0.122 Sum_probs=137.6
Q ss_pred CchHHHHHHHHhcCCcceeeeeeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhcccCCC-
Q 000379 1372 PPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGAS- 1448 (1604)
Q Consensus 1372 ~p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~- 1448 (1604)
+-+.-|..||.+..+.+.+.+...|+. ..|.|.|.+.+....+.|...+||+|..+||+..++.|-..++..+...+
T Consensus 2 d~k~fly~~~~k~~~~p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~ 81 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYGPTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPT 81 (1282)
T ss_pred cHHHHHHHHHhhhccCcceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCcc
Confidence 457789999999999877777777765 67899999999889999999999999999999999999775333111111
Q ss_pred -CCCcC------------CCccccCCCCCCCCCcccccccCcc-ccccCCCccc-----------------ccccccCCC
Q 000379 1449 -NTGKL------------GDDCRQTTKEDLPEPPSCKRQKGTE-AAIPAGDSCK-----------------KAYCMTVGT 1497 (1604)
Q Consensus 1449 -~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------------~~~~~~~~~ 1497 (1604)
..... ...|.+..-...+.. ++..+ ...+|..... .+..+..+.
T Consensus 82 ~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~-----~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~ 156 (1282)
T KOG0921|consen 82 LTSSSLEASSTWQDSETATMFCGGEDGNSFQES-----QQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDL 156 (1282)
T ss_pred cccccccCcccccccccccccccccccccCCCC-----CCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhcc
Confidence 00000 112221111000000 00000 0011110000 011222344
Q ss_pred ccccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCC-ceEEEeCCCCC
Q 000379 1498 PVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEF-GNVECNGDPRA 1576 (1604)
Q Consensus 1498 ~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~-~~~~~~g~~~s 1576 (1604)
.+.-+.+|...|.|..|+++-|+..... .|+.+. .||.|. ++|+.+..+.++.. ...+..+ +++
T Consensus 157 ~~~ihg~wt~eN~K~~ln~~~q~~~~~~-~y~~~~----------~g~~~~---~s~~~e~si~v~~~~~~~~~~~-~gs 221 (1282)
T KOG0921|consen 157 NAEIHGNWTMENAKKALNEYLQKMRIQD-NYKYTI----------VGPEHV---RSFEAEASIYVPQLNRNLVAKE-TGS 221 (1282)
T ss_pred CccccCCCCcchhHHHHhHHHhhhhhcc-ccceee----------cCCccc---cchhhhHHHhhhhhchhhhhhh-ccc
Confidence 5556677888999999999999999855 888777 499999 89998888887753 3333333 448
Q ss_pred CccchhhhHHHHHHHHHHHcCeee
Q 000379 1577 DKKSSFDSAALIMLHELERQGKII 1600 (1604)
Q Consensus 1577 sKK~A~~~AA~~~l~~l~~~~~~~ 1600 (1604)
+||.|..+.|...+++|-+.++.+
T Consensus 222 nkk~~~~~ca~s~vrqm~hl~~~~ 245 (1282)
T KOG0921|consen 222 NKKVAEASCALSLVRQLFHLNVME 245 (1282)
T ss_pred cceecCcchHHHHHHHHHHHhhhh
Confidence 899999999999999998876653
No 221
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00045 Score=75.84 Aligned_cols=71 Identities=21% Similarity=0.149 Sum_probs=54.1
Q ss_pred CCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHH
Q 000379 1508 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAAL 1587 (1604)
Q Consensus 1508 ~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~ 1587 (1604)
.+|...|-++|++++...|++.++.+ +|---+ .+-|+ |-+. .+....+.|.| +|-|.|++.||.
T Consensus 232 ~~P~~~L~~lckr~~l~epe~Rll~e---------sGr~S~--~Pvyv--VgiY--s~kkllGqG~G-esl~~A~e~AA~ 295 (333)
T KOG3769|consen 232 QWPRRLLSRLCKRRGLKEPESRLLAE---------SGRNSA--EPVYV--VGIY--SGKKLLGQGQG-ESLKLAEEQAAR 295 (333)
T ss_pred cchHHHHHHHHHHcCCCCchhHHHHH---------hccCcc--CceEE--EEee--cCchhhccCcc-hHHHHHHHHHHH
Confidence 55679999999999999999999988 665332 15566 4433 23455666766 779999999999
Q ss_pred HHHHHHH
Q 000379 1588 IMLHELE 1594 (1604)
Q Consensus 1588 ~~l~~l~ 1594 (1604)
.||..+.
T Consensus 296 dAL~k~y 302 (333)
T KOG3769|consen 296 DALIKLY 302 (333)
T ss_pred HHHHHHH
Confidence 9999875
No 222
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=97.56 E-value=0.00016 Score=66.17 Aligned_cols=67 Identities=19% Similarity=0.139 Sum_probs=52.1
Q ss_pred CCchHHHHHHHHhcCCcce-eee-eeeCce--EEEEEEEEEcCeEEE---------EEEEeCCHHHHHHHHHHHHHHHhh
Q 000379 1371 LPPLRELIELCDSLGYFVK-ENC-TLKGEM--VHAELRLQLKDVLLV---------GEGQERSRKAAKGKAASQLLKKLE 1437 (1604)
Q Consensus 1371 ~~p~~~L~e~~~~~~~~~~-~~~-~~~g~~--~~~~v~v~v~g~~~~---------~~g~g~skk~Ak~~AA~~AL~~L~ 1437 (1604)
+||++.|+|+|+++++..| +.+ ...|+. ..|.+.|.|.+...- +.--..++++||..||+.||..|.
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 5899999999999999988 333 345765 689999999885431 123346799999999999999873
No 223
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.52 E-value=0.033 Score=67.56 Aligned_cols=119 Identities=13% Similarity=0.187 Sum_probs=87.0
Q ss_pred CCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccc--cccC
Q 000379 412 STQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE--EGMH 489 (1604)
Q Consensus 412 ~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vle--eGID 489 (1604)
....++|||+.+-..--.|.++|++ .++....++-- .+.++-..+-..|.+|+.++|+-|--+- +=..
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~----~~~sF~~i~EY------ts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ 367 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKK----ENISFVQISEY------TSNSDISRARSQFFHGRKPILLYTERFHFFRRYR 367 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHh----cCCeEEEeccc------CCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhce
Confidence 3445899999998888888899886 46666666654 4677778888999999999999996543 3456
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhhcccCc--------eEEEEEeccCHHHHHHHHHHHHH
Q 000379 490 VPNCSYVIRFDLPKTVSSYIQSRGRARQHNS--------QFILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 490 ip~~nlVI~fD~p~s~~syiQr~GRA~R~gs--------~~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
|.++..||.|.+|..+.-|-...+-.....+ .+.+++++=+. -+|+++...
T Consensus 368 irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~---~~LErIVGt 426 (442)
T PF06862_consen 368 IRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDA---LRLERIVGT 426 (442)
T ss_pred ecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHH---HHHHHHhCH
Confidence 7889999999999999888776655444332 46667664433 345554433
No 224
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=97.44 E-value=0.00023 Score=70.99 Aligned_cols=65 Identities=28% Similarity=0.489 Sum_probs=53.1
Q ss_pred cccCcEEEeccC---CceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEee
Q 000379 906 NLKDMVVLAIHT---GRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLK 970 (1604)
Q Consensus 906 ~l~~~vV~~~~~---~~~Y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~ 970 (1604)
.+++.-|.+.|. ++.|.|.++..+..+...|+....+...|+++||+++|++.+..|++|+|.+.
T Consensus 31 ~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~~~y~~~l~~p~lP~v~~g 98 (114)
T cd02846 31 ALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFKEKYNIRLKYPNLPCLQVG 98 (114)
T ss_pred HhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHHHHcCCcccCCCCCEEEeC
Confidence 456788888886 68999999988877777887531124789999999999999999999999874
No 225
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=97.43 E-value=0.00013 Score=84.27 Aligned_cols=68 Identities=18% Similarity=-0.012 Sum_probs=54.5
Q ss_pred CCCchHHHHHHHHhcCCcceee--eeeeCceEEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000379 1370 ELPPLRELIELCDSLGYFVKEN--CTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1370 ~~~p~~~L~e~~~~~~~~~~~~--~~~~g~~~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
.+.-+..|+||+|+.....+.+ ...+.....|...|.+|+- ..|+|.|.|||.||..||+.+|++|.-
T Consensus 374 gks~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~-~yGsG~g~sKK~Ak~~AAR~tLeiLIP 443 (650)
T KOG4334|consen 374 GKSKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLF-PYGSGVGASKKTAKLVAARDTLEILIP 443 (650)
T ss_pred CceeeehHHHHHHHHhhhcceeehhhccCCCCccccccccccc-ccccccccchHHHHHHHHHHHHHHhcc
Confidence 3567889999999877766633 2233444668888999985 889999999999999999999999853
No 226
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.39 E-value=0.0007 Score=74.26 Aligned_cols=135 Identities=18% Similarity=0.186 Sum_probs=87.8
Q ss_pred CCCCCcHHHHHHHHHhhc----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 42 INFIPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
.++..|+-|.++...+.. .|.+..+-+|.|||-+.+=++..++. .+.+.+.++||. +|..|....+++.+
T Consensus 20 ~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LA-----dg~~LvrviVpk-~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALA-----DGSRLVRVIVPK-ALLEQMRQMLRSRL 93 (229)
T ss_pred cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHc-----CCCcEEEEEcCH-HHHHHHHHHHHHHH
Confidence 467889999999988864 79999999999999876654444443 345678888896 99999999998865
Q ss_pred C----CcEEEEEC--CCCCCccchhHH----HHhcCCCcEEEEcHHHHHHHHHhc-------Cc-----------Cccce
Q 000379 118 D----FEVEEYYG--AKGVDEWDSQCW----QKEINKNDVLVMTPQILLDALRKA-------FL-----------SLDIV 169 (1604)
Q Consensus 118 ~----~~v~~~~G--~~~~~~~~~~~w----~~~~~~~~ViV~T~q~Ll~~l~~~-------~~-----------~l~~i 169 (1604)
+ -++..+-= +...+....+.. ........|+++||+.++...-.+ .. .++.-
T Consensus 94 g~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~ 173 (229)
T PF12340_consen 94 GGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEH 173 (229)
T ss_pred HHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 3 23333222 222222111112 233456789999999886543221 10 12233
Q ss_pred eEEEEeCcccccC
Q 000379 170 CFIVIDECHHATG 182 (1604)
Q Consensus 170 ~llI~DEaH~~~~ 182 (1604)
.-=|+||||....
T Consensus 174 ~rdilDEsDe~L~ 186 (229)
T PF12340_consen 174 SRDILDESDEILS 186 (229)
T ss_pred CCeEeECchhccC
Confidence 4568999988754
No 227
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.38 E-value=0.00083 Score=86.86 Aligned_cols=67 Identities=18% Similarity=0.105 Sum_probs=56.6
Q ss_pred CCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 44 FIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
..+.+.|.+++..++. ..++|.+|+|||||.+.+.++.++.. .+.+|++++||..-|++..+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~------~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK------RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 4679999999999985 57889999999999998888887765 2346999999999999998888753
No 228
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.35 E-value=0.00013 Score=92.35 Aligned_cols=113 Identities=25% Similarity=0.293 Sum_probs=87.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---CCcEEEEECCCCCCccchh
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQ 136 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---~~~v~~~~G~~~~~~~~~~ 136 (1604)
.|.++.+|||+|||..|-+.+...+. ..++.++++++|-++|+..-.+...... |++++...|+...+.
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~----~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~---- 1015 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALS----YYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDV---- 1015 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhc----cCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCCh----
Confidence 77899999999999999998877654 4566789999999999876555554432 788999988876552
Q ss_pred HHHHhcCCCcEEEEcHHHHHHHHH--hcCcCccceeEEEEeCcccccCC
Q 000379 137 CWQKEINKNDVLVMTPQILLDALR--KAFLSLDIVCFIVIDECHHATGN 183 (1604)
Q Consensus 137 ~w~~~~~~~~ViV~T~q~Ll~~l~--~~~~~l~~i~llI~DEaH~~~~~ 183 (1604)
......+++|+||+......+ ...--+.+++++|+||.|.+...
T Consensus 1016 ---~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1016 ---KAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred ---hheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 345578999999998866655 22334578899999999998754
No 229
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.34 E-value=0.00067 Score=73.95 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=40.4
Q ss_pred cHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 47 RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 47 r~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
...|..+++.+++ ..+++.+|.|||||+.|+....+++. .+...+++++-|.++.
T Consensus 6 ~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~----~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 6 NEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVK----EGEYDKIIITRPPVEA 61 (205)
T ss_dssp SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHH----TTS-SEEEEEE-S--T
T ss_pred CHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHH----hCCCcEEEEEecCCCC
Confidence 5789999999986 44678899999999999998888776 3566778999898764
No 230
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.013 Score=75.25 Aligned_cols=126 Identities=18% Similarity=0.132 Sum_probs=80.4
Q ss_pred CCCcHHHHHHHHHh-hccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHH---HHHHHHHhhcCC
Q 000379 44 FIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH---QQYDVIRVHTDF 119 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~-l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~---Q~~~~i~~~~~~ 119 (1604)
+..|+|=.+.+-.+ ++.+.|+-|-||=|||++|.+++.--.- .++.+-++.-.--|+. .|...+-.++|+
T Consensus 77 lg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL------~gkgVhvVTvNdYLA~RDae~m~~l~~~LGl 150 (822)
T COG0653 77 LGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL------AGKGVHVVTVNDYLARRDAEWMGPLYEFLGL 150 (822)
T ss_pred cCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhc------CCCCcEEeeehHHhhhhCHHHHHHHHHHcCC
Confidence 34556656666544 4688899999999999999997643211 2333666666667765 455556668899
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHH-HHHHH----h--cCcCccceeEEEEeCccccc
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALR----K--AFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~L-l~~l~----~--~~~~l~~i~llI~DEaH~~~ 181 (1604)
.|+....++..+.. ...=.+||..+|...| .+.++ . .-......++.|+||++-+.
T Consensus 151 svG~~~~~m~~~ek------~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 151 SVGVILAGMSPEEK------RAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred ceeeccCCCChHHH------HHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 99999988865531 1122589999998766 12221 1 11122346777888877653
No 231
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.31 E-value=0.0004 Score=84.09 Aligned_cols=95 Identities=15% Similarity=0.188 Sum_probs=65.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~ 140 (1604)
-++|.+..|||||++|+.++..+.. ...+..++++++..+|.....+.+.... ..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~----~~~~~~~~~l~~n~~l~~~l~~~l~~~~-------~~-------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQN----SEEGKKVLYLCGNHPLRNKLREQLAKKY-------NP-------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhc----cccCCceEEEEecchHHHHHHHHHhhhc-------cc--------------
Confidence 4678899999999999999888721 2345668999999999988887776543 00
Q ss_pred hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccC
Q 000379 141 EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1604)
Q Consensus 141 ~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~ 182 (1604)
......+..+..+.+.+.........+++|||||||++..
T Consensus 58 --~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 --KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred --chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 0122334445555444432334567789999999999965
No 232
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.30 E-value=0.00071 Score=81.75 Aligned_cols=132 Identities=21% Similarity=0.160 Sum_probs=91.4
Q ss_pred CCCCCCcHHHHHHHHHhhccC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC
Q 000379 41 SINFIPRIYQLKVFEVAKRRN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~ 119 (1604)
+.--++..-|..|++.++.+- .||.+|.|+|||.+...++.++.+ . ....||+.+|+..-|+|.++.|++ +|+
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~----~-~~~~VLvcApSNiAVDqLaeKIh~-tgL 479 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLAR----Q-HAGPVLVCAPSNIAVDQLAEKIHK-TGL 479 (935)
T ss_pred CCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHH----h-cCCceEEEcccchhHHHHHHHHHh-cCc
Confidence 334467889999999999755 699999999999999888888876 2 334499999999999999999985 456
Q ss_pred cEEEEECCCC--------------------------------------C-Cc-----cchhHHHHhcCCCcEEEEcHHHH
Q 000379 120 EVEEYYGAKG--------------------------------------V-DE-----WDSQCWQKEINKNDVLVMTPQIL 155 (1604)
Q Consensus 120 ~v~~~~G~~~--------------------------------------~-~~-----~~~~~w~~~~~~~~ViV~T~q~L 155 (1604)
+|.-++.-.. . |. -......+.+..++||.||--.-
T Consensus 480 KVvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~A 559 (935)
T KOG1802|consen 480 KVVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGA 559 (935)
T ss_pred eEeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEecccc
Confidence 6655432110 0 00 00111235567889999995322
Q ss_pred HHHHHhcCcCccceeEEEEeCcccccC
Q 000379 156 LDALRKAFLSLDIVCFIVIDECHHATG 182 (1604)
Q Consensus 156 l~~l~~~~~~l~~i~llI~DEaH~~~~ 182 (1604)
-+. .++-.++..|++||+-....
T Consensus 560 gd~----rl~~~kfr~VLiDEaTQatE 582 (935)
T KOG1802|consen 560 GDR----RLSKFKFRTVLIDEATQATE 582 (935)
T ss_pred cch----hhccccccEEEEecccccCC
Confidence 111 22334678999999987754
No 233
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.28 E-value=0.0011 Score=80.34 Aligned_cols=68 Identities=22% Similarity=0.180 Sum_probs=56.3
Q ss_pred CCCCCCCcHHHHHHHHHhhcc-C-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHH
Q 000379 40 NSINFIPRIYQLKVFEVAKRR-N-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l~~-n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i 113 (1604)
......+.+-|..++..+... + .++.+|+|+|||.+-+.+|..+.. .+++||+.+||..-|+...+.+
T Consensus 180 ~~~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk------~~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 180 TFFNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK------QKKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccCCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH------cCCeEEEEcCchHHHHHHHHHh
Confidence 344567788999999988753 4 589999999999999999888876 5577999999999998888854
No 234
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.23 E-value=0.0015 Score=71.82 Aligned_cols=66 Identities=23% Similarity=0.199 Sum_probs=42.4
Q ss_pred CCcHHHHHHHHHhhc--cC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000379 45 IPRIYQLKVFEVAKR--RN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~--~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~ 120 (1604)
++.+-|.+++..++. .+ ++|.++.|+|||.+...+...+.. .+.++++++||...+. ++++.++..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~------~g~~v~~~apT~~Aa~----~L~~~~~~~ 69 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEA------AGKRVIGLAPTNKAAK----ELREKTGIE 69 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHH------TT--EEEEESSHHHHH----HHHHHHTS-
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHh------CCCeEEEECCcHHHHH----HHHHhhCcc
Confidence 367889999999974 33 567899999999865554443332 3467999999965544 455444433
No 235
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.18 E-value=0.0016 Score=81.17 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=90.7
Q ss_pred HHHHHHHHhhccC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECC
Q 000379 49 YQLKVFEVAKRRN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGA 127 (1604)
Q Consensus 49 yQ~e~l~~~l~~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~ 127 (1604)
|-.++++.....+ +||-..||+|||......|++-+.+. ..+.-.-+++--|++..+.-.++.+.+.-+-.++..+|-
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~n-s~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy 460 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLEN-SNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGY 460 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhc-cccccccceeccccccchHHHHHHHHHhhHHhhcccccc
Confidence 3344444444433 67889999999987766555543211 222334466677887776666666655433333333332
Q ss_pred CCCCccchhHHHHhc--CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEE
Q 000379 128 KGVDEWDSQCWQKEI--NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFG 205 (1604)
Q Consensus 128 ~~~~~~~~~~w~~~~--~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLg 205 (1604)
. +. ++... ..--|+.||-+.++.++..+. ..+.++|+||.|..--+..+..++..=.......-+++.
T Consensus 461 ~-vR------f~Sa~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~l 530 (1282)
T KOG0921|consen 461 N-VR------FDSATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVL 530 (1282)
T ss_pred c-cc------ccccccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccchhhhhhh
Confidence 1 10 11111 134689999999999988774 467799999999986555555443322222234467888
Q ss_pred EeccCC
Q 000379 206 MTASPV 211 (1604)
Q Consensus 206 LTATP~ 211 (1604)
|+||..
T Consensus 531 msatId 536 (1282)
T KOG0921|consen 531 MSATID 536 (1282)
T ss_pred hhcccc
Confidence 999853
No 236
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.14 E-value=0.0017 Score=66.55 Aligned_cols=118 Identities=18% Similarity=0.235 Sum_probs=63.6
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
+.++|.+++|+|||..+-.++..+............+.+-+|...-.......+...++.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 68 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---------------- 68 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----------------
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----------------
Confidence 4578999999999999888887765433222344555666665443445555555444322110
Q ss_pred HhcCCCcEEEEcHH----HHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCC
Q 000379 140 KEINKNDVLVMTPQ----ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q----~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~ 211 (1604)
-.+.. .+.+.+.+.. ..+||+||+|++. . ...+..+........--+.++++|.
T Consensus 69 ---------~~~~~~l~~~~~~~l~~~~-----~~~lviDe~~~l~-~---~~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 69 ---------RQTSDELRSLLIDALDRRR-----VVLLVIDEADHLF-S---DEFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp ---------TS-HHHHHHHHHHHHHHCT-----EEEEEEETTHHHH-T---HHHHHHHHHHTCSCBEEEEEEESST
T ss_pred ---------cCCHHHHHHHHHHHHHhcC-----CeEEEEeChHhcC-C---HHHHHHHHHHHhCCCCeEEEEEChh
Confidence 01222 2333333322 2799999999984 2 3333333222333334478888873
No 237
>PF13245 AAA_19: Part of AAA domain
Probab=97.04 E-value=0.0019 Score=58.70 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=43.1
Q ss_pred HHHHhhc-cC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHH
Q 000379 53 VFEVAKR-RN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1604)
Q Consensus 53 ~l~~~l~-~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i 113 (1604)
++..++. .+ ++|.+|.|||||..++-.+.++.... ... ++++++++|++..+++..+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~-~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR-ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh-cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4443333 44 45699999999998888888877411 122 667999999999988877776
No 238
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.98 E-value=0.002 Score=80.69 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=55.7
Q ss_pred HHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC-----c----------eEEEEEeccCHHH
Q 000379 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN-----S----------QFILMLERGNLKQ 533 (1604)
Q Consensus 469 ~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g-----s----------~~i~~v~~~~~~~ 533 (1604)
.|.+ ..+.|++-.++-||.|=|++=.++-.....|..+=.|-+||.-|-- . ...+|+......-
T Consensus 479 SFd~-plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~F 557 (985)
T COG3587 479 SFDE-PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDF 557 (985)
T ss_pred ccCC-cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHH
Confidence 3544 3789999999999999999999999999999999999999997752 1 1344555444444
Q ss_pred HHHHHHHHHHH
Q 000379 534 RNKLFDIIRSE 544 (1604)
Q Consensus 534 ~~~l~~~~~~e 544 (1604)
...|.+.+.++
T Consensus 558 v~~LqkEI~~~ 568 (985)
T COG3587 558 VKALQKEINDE 568 (985)
T ss_pred HHHHHHHHHHh
Confidence 45555555443
No 239
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.92 E-value=0.0049 Score=77.77 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=34.9
Q ss_pred CCCCCCCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHH
Q 000379 37 SSTNSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVM 78 (1604)
Q Consensus 37 ~~~~~~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliail 78 (1604)
..+....++|++-|...+..++ +.|+++-.|||+|||+.-+.
T Consensus 13 Gv~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLC 59 (945)
T KOG1132|consen 13 GVPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLC 59 (945)
T ss_pred CceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHH
Confidence 4455678899999999999886 38899999999999986544
No 240
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.91 E-value=0.0039 Score=66.77 Aligned_cols=80 Identities=25% Similarity=0.348 Sum_probs=55.9
Q ss_pred CcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEcc--ccccccCCC
Q 000379 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATD--VIEEGMHVP 491 (1604)
Q Consensus 414 ~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~--vleeGIDip 491 (1604)
...++||+++....+.+.+.++......++.+ +..+ .....++++.|++++--||+|+. .+.||||+|
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v-~~q~---------~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPV-FVQG---------SKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCE-EEST---------CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhccccccee-eecC---------cchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 36899999999999999888876321112211 1112 23568899999999999999998 999999999
Q ss_pred C--ccEEEEcCCCC
Q 000379 492 N--CSYVIRFDLPK 503 (1604)
Q Consensus 492 ~--~nlVI~fD~p~ 503 (1604)
+ |..||...+|.
T Consensus 79 ~~~~r~vii~glPf 92 (167)
T PF13307_consen 79 GDLLRAVIIVGLPF 92 (167)
T ss_dssp CESEEEEEEES---
T ss_pred CchhheeeecCCCC
Confidence 6 88999888764
No 241
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=96.90 E-value=0.00047 Score=68.80 Aligned_cols=23 Identities=35% Similarity=0.787 Sum_probs=21.1
Q ss_pred CCCCchhhHHHHHHHhceeecCC
Q 000379 1324 MKAPKALGDLLESIVGAVLIDTK 1346 (1604)
Q Consensus 1324 ~~~~k~l~D~~Ea~iGAi~lD~g 1346 (1604)
...+|+++|+|||++||||+|+|
T Consensus 92 ~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 92 VLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHHHHHHHhcC
Confidence 44689999999999999999998
No 242
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.001 Score=79.72 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=68.0
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc----CCcEEEEECCCCCCccchhHHH
Q 000379 64 AVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT----DFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 64 v~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~----~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
.-|.||||||++...+|.+... .+.+..+|.|+....++.....+-.-. =+.-.+.+++..+.-.....+.
T Consensus 2 f~matgsgkt~~ma~lil~~y~-----kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fs 76 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYK-----KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFS 76 (812)
T ss_pred cccccCCChhhHHHHHHHHHHH-----hchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccC
Confidence 3589999999999999999876 244558888887666665444332211 0111222333322221111122
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhc---CcCcc---cee-EEEEeCccccc
Q 000379 140 KEINKNDVLVMTPQILLDALRKA---FLSLD---IVC-FIVIDECHHAT 181 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q~Ll~~l~~~---~~~l~---~i~-llI~DEaH~~~ 181 (1604)
.--....|.++|.|.|...+.+. .+.+. +.. +.+-|||||+-
T Consensus 77 ehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 77 EHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred ccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 22235789999999998887653 33333 334 45679999985
No 243
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=96.81 E-value=0.0015 Score=61.47 Aligned_cols=71 Identities=27% Similarity=0.328 Sum_probs=44.3
Q ss_pred hhhHHHHHHhCC-----CCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhH
Q 000379 1511 RTSLFQLCKTML-----WPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSA 1585 (1604)
Q Consensus 1511 k~~L~e~~~~~~-----~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~A 1585 (1604)
.+.|+.||++-- ...|.|++... . ..|+|+|.+=+. .+.-...|....|||.||++|
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~---------~--------~~~~c~v~LP~~-~pi~~i~g~~~~sk~~AK~sA 63 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKI---------G--------SGFICTVILPIN-SPIRSIEGPPMRSKKLAKRSA 63 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE-------------------G-EEEEEE--TT--SS--EEEE--SSHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEc---------C--------CcEEEEEECCCC-CCCCeEEccccccHHHHHHHH
Confidence 378999998742 24577877664 1 257776655422 233346677888999999999
Q ss_pred HHHHHHHHHHcCee
Q 000379 1586 ALIMLHELERQGKI 1599 (1604)
Q Consensus 1586 A~~~l~~l~~~~~~ 1599 (1604)
|.+|...|.+.|.|
T Consensus 64 Af~Ac~~L~~~g~l 77 (90)
T PF03368_consen 64 AFEACKKLHEAGEL 77 (90)
T ss_dssp HHHHHHHHHHH-S-
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999999976
No 244
>PRK06526 transposase; Provisional
Probab=96.66 E-value=0.0033 Score=71.84 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=28.2
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP 101 (1604)
+.|+++++|+|+|||..+..+..+... .+.+++|...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~------~g~~v~f~t~ 134 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ------AGHRVLFATA 134 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH------CCCchhhhhH
Confidence 489999999999999999988777654 3344666433
No 245
>PRK10536 hypothetical protein; Provisional
Probab=96.59 E-value=0.04 Score=61.94 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=40.8
Q ss_pred CCC-cHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 44 FIP-RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 44 ~~p-r~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
+.| ...|..++..+.+ ..+++.+++|||||+.++.+..+.+. .+.-.++++.=|+++.
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~----~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALI----HKDVDRIIVTRPVLQA 116 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHh----cCCeeEEEEeCCCCCc
Confidence 444 5577777776664 66778899999999999998776553 1234556666677553
No 246
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.26 Score=59.20 Aligned_cols=133 Identities=13% Similarity=0.216 Sum_probs=85.8
Q ss_pred HHHHHHHH-HHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 397 TKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 397 ~K~~~L~~-lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
.++.-..+ |+-++......-|+|++++-..--.+...+++. .+....++-- -+..+-...-+-|-.|..
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e----~i~F~~i~EY------ssk~~vsRAR~lF~qgr~ 603 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE----EISFVMINEY------SSKSKVSRARELFFQGRK 603 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhh----hcchHHHhhh------hhHhhhhHHHHHHHhcCc
Confidence 44554444 344554444456899999887777777777763 2222222221 122333345566889999
Q ss_pred eEEEEccccc--cccCCCCccEEEEcCCCCCHHH---HHHHhhhhcccC------ceEEEEEeccCHHHHHHHHHHHH
Q 000379 476 NLLFATDVIE--EGMHVPNCSYVIRFDLPKTVSS---YIQSRGRARQHN------SQFILMLERGNLKQRNKLFDIIR 542 (1604)
Q Consensus 476 ~iLIaT~vle--eGIDip~~nlVI~fD~p~s~~s---yiQr~GRA~R~g------s~~i~~v~~~~~~~~~~l~~~~~ 542 (1604)
++|+-|.-+- +--+|.++..||.|.+|.++.- ++-+.||+.-.| ..+.+|+.+-+. -.|+.+..
T Consensus 604 ~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~---i~Le~ivG 678 (698)
T KOG2340|consen 604 SVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR---IRLENIVG 678 (698)
T ss_pred eEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhh---HHHHHhhh
Confidence 9999987654 5578999999999999998754 467888887766 457777775433 34444443
No 247
>PLN03202 protein argonaute; Provisional
Probab=96.51 E-value=0.0031 Score=84.62 Aligned_cols=84 Identities=21% Similarity=0.312 Sum_probs=65.9
Q ss_pred ccccCcEEEeccCCceEEEEEecCCCCCCCCCCCCC--------CCCCchHHHHHhhhccccccCC-CCceEEeeccCCc
Q 000379 905 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNT--------DDDSKTFVNYFSEKYGIVLIHP-GQPLLRLKQSHNP 975 (1604)
Q Consensus 905 ~~l~~~vV~~~~~~~~Y~v~~i~~d~~p~spf~~~~--------~~~~~ty~~yy~~k~~~~i~~~-~QPlL~~~~~~~~ 975 (1604)
+.+++..|.+.|+++.|.|.+|.++.++...|.... .+...|+.|||+++|++.|.++ ++|++.+..-
T Consensus 293 ~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~--- 369 (900)
T PLN03202 293 RMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGKP--- 369 (900)
T ss_pred HHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCCC---
Confidence 457889999999999999999999999988886321 1237899999999999999986 8888863210
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCceeeeCcccceeecc
Q 000379 976 HNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDV 1017 (1604)
Q Consensus 976 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pel~~~~~i 1017 (1604)
...++||||+|.+.+.
T Consensus 370 --------------------------~~~~ylP~ElC~i~~~ 385 (900)
T PLN03202 370 --------------------------KRPTYFPIELCSLVSL 385 (900)
T ss_pred --------------------------CCCeEEcceeeEccCC
Confidence 0124799999999874
No 248
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.29 E-value=0.02 Score=73.27 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhcc-CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 48 IYQLKVFEVAKRR-NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 48 ~yQ~e~l~~~l~~-n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
++|++++..++.+ -++|.++.|||||.+...++..+..... ...+.++++.+||---+....+.+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~-~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSP-KQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhcc-ccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 7999999999875 4689999999999987776655543111 11134699999997666655555543
No 249
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.28 E-value=0.018 Score=73.75 Aligned_cols=66 Identities=23% Similarity=0.205 Sum_probs=47.3
Q ss_pred cHHHHHHHHHhhcc-CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 47 RIYQLKVFEVAKRR-NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 47 r~yQ~e~l~~~l~~-n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
-++|++++..++.. -++|.+++|||||.+...++..+.+. ...+..++++.+||.--+....+.+.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~--~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQL--ADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--cCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 47999999999875 56899999999999877666655431 11234568999999666555555444
No 250
>PRK08181 transposase; Validated
Probab=96.24 E-value=0.045 Score=62.96 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=37.8
Q ss_pred cHHHHHHHHHh-----hccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHH
Q 000379 47 RIYQLKVFEVA-----KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109 (1604)
Q Consensus 47 r~yQ~e~l~~~-----l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~ 109 (1604)
..-|..++..+ .++|+++++|+|+|||+.+..+..++.+ .+..++|+. ...|+.+.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~------~g~~v~f~~-~~~L~~~l 149 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE------NGWRVLFTR-TTDLVQKL 149 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH------cCCceeeee-HHHHHHHH
Confidence 45666666433 2488999999999999999888777665 234455554 34565544
No 251
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.22 E-value=0.033 Score=73.49 Aligned_cols=62 Identities=21% Similarity=0.113 Sum_probs=45.2
Q ss_pred CCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHH
Q 000379 42 INFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~ 107 (1604)
..+.+.+-|.+++..+.. +-++|.++.|||||.+.-.++..+.. .++...+++++||-.-+.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~----~~~~~~v~l~ApTg~AA~ 382 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEE----LGGLLPVGLAAPTGRAAK 382 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHH----cCCCceEEEEeCchHHHH
Confidence 356789999999999975 55789999999999977655543322 222256888999955544
No 252
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.99 E-value=0.018 Score=68.33 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=40.2
Q ss_pred cHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 47 RIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 47 r~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
+|-|.+-+..++ ++++++-||+|+|||..-+.++.... ........+.++-.-|++=++....+++
T Consensus 18 YPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq--~~~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 18 YPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQ--LHYPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred CHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHH--HhCCcccceEEEecCcchHHHHHHHHHH
Confidence 556666555443 48899999999999987666554321 1122244456666666655555444444
No 253
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.90 E-value=0.038 Score=63.64 Aligned_cols=146 Identities=17% Similarity=0.182 Sum_probs=82.4
Q ss_pred CCCCCCcH-HHHHHHHHhhccC---EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 41 SINFIPRI-YQLKVFEVAKRRN---TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 41 ~~~~~pr~-yQ~e~l~~~l~~n---~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
...+.||. +|.-+++.++..+ +.+.+.-|||||+.|+....+... ..+..+++++-=|++++.+ .
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~---e~~~y~KiiVtRp~vpvG~----d---- 291 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVL---ERKRYRKIIVTRPTVPVGE----D---- 291 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHH---HHhhhceEEEecCCcCccc----c----
Confidence 34567765 6777888888744 467789999999988875444322 2345566888889988752 1
Q ss_pred cCCcEEEEECCC--CCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccce----------eEEEEeCcccccCCC
Q 000379 117 TDFEVEEYYGAK--GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIV----------CFIVIDECHHATGNH 184 (1604)
Q Consensus 117 ~~~~v~~~~G~~--~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i----------~llI~DEaH~~~~~~ 184 (1604)
++.+-|.. ....|-....+..---...==|+.++|-..+.++.+.+..+ .+||+|||+++...
T Consensus 292 ----IGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph- 366 (436)
T COG1875 292 ----IGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH- 366 (436)
T ss_pred ----cCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH-
Confidence 12222221 12233322222110001111123567777777666555443 47999999998642
Q ss_pred hHHHHHHHHHhhcCCCCcEEEE
Q 000379 185 PYTKIMKEFYHKSDNKPKVFGM 206 (1604)
Q Consensus 185 ~~~~im~~~~~~~~~~p~iLgL 206 (1604)
.|+-+........+|+++
T Consensus 367 ----eikTiltR~G~GsKIVl~ 384 (436)
T COG1875 367 ----ELKTILTRAGEGSKIVLT 384 (436)
T ss_pred ----HHHHHHHhccCCCEEEEc
Confidence 344444444555566543
No 254
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.69 E-value=0.1 Score=63.16 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=67.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
..+++++|||+|||.++.-++.++.... ....++..++-+.+ +.-+..|...+.+.+++++..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~-~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~--------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINS-DDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKA--------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh-ccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEe---------------
Confidence 3467899999999998887776554311 11234445555554 333333344444444544321
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCC-CcEEEEeccCC
Q 000379 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPV 211 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~-p~iLgLTATP~ 211 (1604)
+.+++.+...+.. +.+.++||+|++.+...+...-.-+..++...... -.+|-|+||-.
T Consensus 239 ----------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 239 ----------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred ----------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 2234444444432 35789999999998865422223344444333222 36699999843
No 255
>PRK04296 thymidine kinase; Provisional
Probab=95.56 E-value=0.025 Score=61.92 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=26.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP 101 (1604)
.++.+|+|+|||..++.++..... .+++++++-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~------~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE------RGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH------cCCeEEEEec
Confidence 468899999999988888776654 3456777766
No 256
>PRK08727 hypothetical protein; Validated
Probab=95.46 E-value=0.049 Score=61.85 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=24.3
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEe
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLA 100 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~Lv 100 (1604)
-+++++++|+|||..+..+..+..+ .+.+++|+.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~------~~~~~~y~~ 76 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQ------AGRSSAYLP 76 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEEe
Confidence 3789999999999988877666543 233466654
No 257
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.15 Score=61.08 Aligned_cols=120 Identities=15% Similarity=0.084 Sum_probs=63.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
+.+++++|||+|||..+..++..... ..+..+..++-+.+ +.=+.+|...+-+..++.+..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~---~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~-------------- 200 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVM---RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAV-------------- 200 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH---hcCCCeEEEEecccccccHHHHHHHHHHHcCCceEec--------------
Confidence 46789999999999998888776543 11223333333333 1223444555555555444332
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCC
Q 000379 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~ 211 (1604)
.+++.+...+. .+.+.++|+||++=....+......+..+.......-.+|-|+||-.
T Consensus 201 -----------~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~ 258 (374)
T PRK14722 201 -----------KDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSH 258 (374)
T ss_pred -----------CCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccC
Confidence 22222322222 23456899999995543332333334333221222345788899843
No 258
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.42 E-value=0.13 Score=68.18 Aligned_cols=101 Identities=16% Similarity=0.042 Sum_probs=64.3
Q ss_pred CCCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000379 43 NFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~ 120 (1604)
.+.+.+-|.+++..+.. +-++|.++.|+|||.+.-.++ +.+. . .+..+++++||--- ++.++..+++.
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~-~~~~---~--~g~~V~~~ApTg~A----a~~L~~~~g~~ 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAR-EAWE---A--AGYRVIGAALSGKA----AEGLQAESGIE 419 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHH-HHHH---h--CCCeEEEEeCcHHH----HHHHHhccCCc
Confidence 46789999999999875 446899999999998755543 3333 1 34569999999433 34444434332
Q ss_pred EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
.. |-..++..+.++...+...++||+|||-.+.
T Consensus 420 a~----------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~ 452 (744)
T TIGR02768 420 SR----------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVG 452 (744)
T ss_pred ee----------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCC
Confidence 21 1122211122233345678899999998884
No 259
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.41 E-value=0.08 Score=58.14 Aligned_cols=121 Identities=17% Similarity=0.099 Sum_probs=69.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec-ChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP-TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP-t~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~ 140 (1604)
+++++|||+|||..+.-++.++.. . +++..++-+. .|.=+.+|.+.+.+.+++++....-.. +
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~----~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~--~--------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKL----K-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTES--D--------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH----T-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTS--C---------
T ss_pred EEEECCCCCchHhHHHHHHHHHhh----c-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcch--h---------
Confidence 468999999999998888877654 2 3444444444 344455666666666776654322110 1
Q ss_pred hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 141 EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 141 ~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
..+.+.+.+.. ..-++.++|++|-+-+...+.....-|+.+.....+....|-|+||-
T Consensus 68 ----------~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 68 ----------PAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATM 125 (196)
T ss_dssp ----------HHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGG
T ss_pred ----------hHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEeccc
Confidence 11122222221 12245789999998776544344455666655554555678889884
No 260
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.36 E-value=0.059 Score=69.07 Aligned_cols=126 Identities=15% Similarity=0.113 Sum_probs=85.9
Q ss_pred CCCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000379 43 NFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~ 120 (1604)
...+..-|++|+.+++. .-.+|.+=+|||||.....+|+-++. .+++||..+=|..-|+...-.++ ++.
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~------~gkkVLLtsyThsAVDNILiKL~---~~~ 737 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA------LGKKVLLTSYTHSAVDNILIKLK---GFG 737 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH------cCCeEEEEehhhHHHHHHHHHHh---ccC
Confidence 34688999999999984 45688888999999998888888776 56779999999777776655554 333
Q ss_pred EEEEE-CCCCCCc--------------cchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 121 VEEYY-GAKGVDE--------------WDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 121 v~~~~-G~~~~~~--------------~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
+.++. |....-. .+-....+.++...||.||-=-+ .|..+...+|++.|+|||-.+.
T Consensus 738 i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi----~~plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 738 IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI----NHPLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC----CchhhhccccCEEEEccccccc
Confidence 33332 2211111 11122346677888999985332 2334456679999999998764
No 261
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.30 E-value=0.16 Score=52.48 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=20.3
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+.+++.+++|+|||..+-.++..+.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 5689999999999987777766553
No 262
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.29 E-value=0.036 Score=66.23 Aligned_cols=122 Identities=16% Similarity=0.062 Sum_probs=74.9
Q ss_pred cHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEEC
Q 000379 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYG 126 (1604)
Q Consensus 47 r~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G 126 (1604)
.+-|.+++.. ..++++|.|..|||||.+.+..+.+++... ..+..++|+|+.|+..+....+.+...++-...
T Consensus 2 ~~eQ~~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~--~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~---- 74 (315)
T PF00580_consen 2 TDEQRRIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEG--GVPPERILVLTFTNAAAQEMRERIRELLEEEQQ---- 74 (315)
T ss_dssp -HHHHHHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTS--SSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCH----
T ss_pred CHHHHHHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhccc--cCChHHheecccCHHHHHHHHHHHHHhcCcccc----
Confidence 4678889888 889999999999999999998888877511 134455999999999999988888874321100
Q ss_pred CCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCcc--ceeEEEEeCcc
Q 000379 127 AKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD--IVCFIVIDECH 178 (1604)
Q Consensus 127 ~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~--~i~llI~DEaH 178 (1604)
....+. ...........+.|+|...+...+-+.+.... .-++-|+|+..
T Consensus 75 ~~~~~~---~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ESSDNE---RLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CCTT-H---HHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccccc---cccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 000000 11111223467889998877654433222111 12355666654
No 263
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.28 E-value=0.034 Score=57.11 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=27.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChh
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~ 104 (1604)
.++++.+|+|+|||..+..++..+.. ....++++.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~------~~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP------PGGGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC------CCCCEEEECCEEc
Confidence 56899999999999998887766532 2123666666543
No 264
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.28 E-value=0.31 Score=62.93 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=31.9
Q ss_pred CCCCcHHHHHHHHHhhc--------cCEE-EEeCCCChHHHHHHHHHHHHHH
Q 000379 43 NFIPRIYQLKVFEVAKR--------RNTI-AVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~--------~n~I-v~~~TGsGKTliailli~~~~~ 85 (1604)
.+.-|+-|.+.+..++. .++| |+++||+|||.++-.++.++.+
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45568888887765542 3554 9999999999998888776643
No 265
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.17 E-value=0.16 Score=57.52 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhc---------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEE
Q 000379 48 IYQLKVFEVAKR---------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFL 99 (1604)
Q Consensus 48 ~yQ~e~l~~~l~---------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~L 99 (1604)
+-|..++..+.+ .++++.+++|+|||..+..++.++.. .+..++|+
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~------~g~~v~~i 133 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL------RGKSVLII 133 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEE
Confidence 456666665542 46899999999999999988887765 23446555
No 266
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.02 E-value=0.19 Score=59.79 Aligned_cols=60 Identities=25% Similarity=0.342 Sum_probs=44.4
Q ss_pred CCCCcHHHHHHHHHhh---------ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHH
Q 000379 43 NFIPRIYQLKVFEVAK---------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l---------~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~ 109 (1604)
...||..+..+++.+. +.+++++++||+|||+.+..++.+++. .+..|+|+.- ..|..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~------~g~~V~y~t~-~~l~~~l 226 (329)
T PRK06835 158 PLSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD------RGKSVIYRTA-DELIEIL 226 (329)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH------CCCeEEEEEH-HHHHHHH
Confidence 3478999888887554 378999999999999999988888765 3444665543 4665554
No 267
>PRK12377 putative replication protein; Provisional
Probab=94.99 E-value=0.18 Score=57.45 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=31.5
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
.++++.+++|+|||+.+..++.++.. .+..++|+ +...|..+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~------~g~~v~~i-~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA------KGRSVIVV-TVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH------cCCCeEEE-EHHHHHHHHHH
Confidence 57899999999999999998888765 23334443 44466555443
No 268
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.97 E-value=0.1 Score=59.85 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=38.1
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
+.|+++.+++|+|||+.|+.+..++.. .+. -+..+++..|+.+....+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~------~g~-sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLK------AGI-SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH------cCC-eEEEEEHHHHHHHHHHHHh
Confidence 479999999999999999998888764 233 4555666788887777655
No 269
>PRK06893 DNA replication initiation factor; Validated
Probab=94.89 E-value=0.087 Score=59.64 Aligned_cols=25 Identities=8% Similarity=-0.079 Sum_probs=20.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
.+++++|+|+|||..+..+..++..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999988888777654
No 270
>PRK05642 DNA replication initiation factor; Validated
Probab=94.85 E-value=0.1 Score=59.27 Aligned_cols=42 Identities=10% Similarity=0.254 Sum_probs=25.5
Q ss_pred ceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEecc
Q 000379 168 IVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209 (1604)
Q Consensus 168 ~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTAT 209 (1604)
+.++||+|+.|...+...+...+-..+......-+.+.+|++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 457899999998866544444444444333233355667766
No 271
>PF13871 Helicase_C_4: Helicase_C-like
Probab=94.84 E-value=0.13 Score=58.85 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=50.0
Q ss_pred HHHHHHhCCCceEEEEccccccccCCCCc--------cEEEEcCCCCCHHHHHHHhhhhcccCce
Q 000379 465 EVLESFRGGKVNLLFATDVIEEGMHVPNC--------SYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 465 ~vl~~Fr~g~~~iLIaT~vleeGIDip~~--------nlVI~fD~p~s~~syiQr~GRA~R~gs~ 521 (1604)
...+.|.+|+.+|+|.+..++.||-+.+- .+-|...+||+....+|..||+.|.|+.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 56778999999999999999999988753 2446788999999999999999999985
No 272
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.84 E-value=0.27 Score=60.74 Aligned_cols=118 Identities=22% Similarity=0.171 Sum_probs=65.6
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHH-HHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIA-QAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~-~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
.+++++|||+|||..+..++.++. . .+..+..++-+.+ +.-+..|...+.+..++.+
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~----~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~----------------- 281 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALL----YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV----------------- 281 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh----cCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-----------------
Confidence 467889999999998888776654 2 2234444444443 2111222222222333322
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc-CCCCcEEEEeccCC
Q 000379 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-DNKPKVFGMTASPV 211 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~-~~~p~iLgLTATP~ 211 (1604)
..+.++..+...+.. +.+.++||+|.+-+...+......+..+.... ......|.|+||..
T Consensus 282 --------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 282 --------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK 343 (424)
T ss_pred --------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC
Confidence 122344444444442 33679999999977655444555566665422 23345788999864
No 273
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.82 E-value=0.11 Score=59.22 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=30.3
Q ss_pred HHHHHHHHhh----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec
Q 000379 49 YQLKVFEVAK----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1604)
Q Consensus 49 yQ~e~l~~~l----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP 101 (1604)
....++..+. ..++++++|+|+|||..+..+..+... .+.+++|+.-
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~------~~~~v~y~~~ 81 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ------RGRAVGYVPL 81 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEEH
Confidence 3444444443 257899999999999988776665543 2344566543
No 274
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.76 E-value=0.29 Score=58.37 Aligned_cols=118 Identities=19% Similarity=0.146 Sum_probs=62.7
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecCh--hhHHHHHHHHHhhcCCcEEEEECCCCCCccchhH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV--HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~--~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~ 137 (1604)
+.+.+++|||+|||..+..+...+.. ...+..++-+.+- +-++|+..... ..++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~-----~GkkVglI~aDt~RiaAvEQLk~yae-~lgipv---------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHG-----KKKTVGFITTDHSRIGTVQQLQDYVK-TIGFEV---------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH-----cCCcEEEEecCCcchHHHHHHHHHhh-hcCCcE----------------
Confidence 34679999999999988887766543 2334444455332 34455443222 222222
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEecc
Q 000379 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209 (1604)
Q Consensus 138 w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTAT 209 (1604)
+++.++..+.+.+.... .-.+.++|++|-+=+...+...-.-+..+.....+.-.+|-|+||
T Consensus 300 ---------~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT 361 (436)
T PRK11889 300 ---------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS 361 (436)
T ss_pred ---------EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc
Confidence 22346666665554211 112578999998866554433333334443322222234557776
No 275
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=94.64 E-value=0.054 Score=66.22 Aligned_cols=64 Identities=27% Similarity=0.283 Sum_probs=49.6
Q ss_pred CCCchHHHHHHHHhcCCcceeeeeeeCc--eEEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000379 1370 ELPPLRELIELCDSLGYFVKENCTLKGE--MVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1370 ~~~p~~~L~e~~~~~~~~~~~~~~~~g~--~~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
..+|+..|+|+.+ +.... .....|+ .+.|.|.|.+||..+. .| |.|||+||..||..||+.|..
T Consensus 89 ~~npv~ll~e~~~--~~~~~-~~~~~~~~~~~~F~~~~~vdg~~~~-~~-~~sKk~ak~~aa~~al~~l~~ 154 (542)
T KOG2777|consen 89 GKNPVSLLHELAN--GLFFD-FVNESGPQHAPKFVMSVVVDGRWFE-GG-GRSKKEAKQEAAMAALQVLFK 154 (542)
T ss_pred cCCchHHHHHHhc--cccee-eeccCCCCCCceEEEEEEECCEEcc-CC-CcchHHHHHHHHHHHHHHHHh
Confidence 6899999999998 32222 2223333 3789999999997433 34 999999999999999999987
No 276
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.58 E-value=0.32 Score=65.58 Aligned_cols=101 Identities=14% Similarity=0.027 Sum_probs=63.5
Q ss_pred CCCCcHHHHHHHHHhhc-cC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000379 43 NFIPRIYQLKVFEVAKR-RN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~ 120 (1604)
.+.+.+-|.+++..++. .+ ++|.+..|+|||.+ +..+...++ ..+..|+.++||--- ++.+..-+|+.
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e-----~~G~~V~~~ApTGkA----A~~L~e~tGi~ 413 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWE-----AAGYEVRGAALSGIA----AENLEGGSGIA 413 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHH-----HcCCeEEEecCcHHH----HHHHhhccCcc
Confidence 46789999999999886 33 68999999999986 334444443 134568999999433 34444333321
Q ss_pred EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
. .|...|+.....+...+...++||+|||-.+.
T Consensus 414 a----------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~ 446 (988)
T PRK13889 414 S----------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG 446 (988)
T ss_pred h----------------------------hhHHHHHhhhcccccccccCcEEEEECcccCC
Confidence 1 12222221112233345567899999999774
No 277
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.53 E-value=0.11 Score=58.60 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=29.9
Q ss_pred cHHHHHHHHHhhc-------cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 47 RIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 47 r~yQ~e~l~~~l~-------~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
-.+|......+++ .+.+.++|.|+|||-+|.++.+++.
T Consensus 38 ~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 38 LAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred hcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 3478777766542 5689999999999999999887764
No 278
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.44 E-value=0.11 Score=53.80 Aligned_cols=44 Identities=30% Similarity=0.340 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCCC-ceEEEEccccccccCCCC--ccEEEEcCCCC
Q 000379 460 PKVQKEVLESFRGGK-VNLLFATDVIEEGMHVPN--CSYVIRFDLPK 503 (1604)
Q Consensus 460 ~~~r~~vl~~Fr~g~-~~iLIaT~vleeGIDip~--~nlVI~fD~p~ 503 (1604)
..+..++++.|++.. .-||++|.-..||||+|+ |..||...+|.
T Consensus 33 ~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 33 GKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred hhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 445678899998754 369999988999999997 78888776553
No 279
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.35 E-value=0.19 Score=63.24 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=32.2
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i 113 (1604)
.+++++|+|+|||..+-.+..++.+ ..++.+++++.. ..+..+....+
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~----~~~~~~v~yi~~-~~~~~~~~~~~ 197 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILE----KNPNAKVVYVTS-EKFTNDFVNAL 197 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH----hCCCCeEEEEEH-HHHHHHHHHHH
Confidence 4789999999999988887776654 233455666644 35555444444
No 280
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.34 E-value=0.18 Score=57.08 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.4
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.++++.+++|+|||..+..+..+..
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999988776654
No 281
>PRK14974 cell division protein FtsY; Provisional
Probab=94.34 E-value=0.31 Score=57.91 Aligned_cols=119 Identities=17% Similarity=0.138 Sum_probs=64.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEe-cC--hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLA-PT--VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~Lv-Pt--~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
+++++++|+|||.+...++..+.. .+.+++++. .+ ..-++|+.. ....+++++... ..+.+.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~------~g~~V~li~~Dt~R~~a~eqL~~-~a~~lgv~v~~~--~~g~dp------ 207 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKK------NGFSVVIAAGDTFRAGAIEQLEE-HAERLGVKVIKH--KYGADP------ 207 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEecCCcCcHHHHHHHHH-HHHHcCCceecc--cCCCCH------
Confidence 458899999999988777765533 223344443 33 344455543 444566654321 111110
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
..++.+.+... .....++||+|.+++...+...-.-++.+.....+.-.+|-++|+.
T Consensus 208 -------------~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~ 264 (336)
T PRK14974 208 -------------AAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALA 264 (336)
T ss_pred -------------HHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecccc
Confidence 01122322221 1134679999999998755444444555544344445567788864
No 282
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.19 E-value=0.23 Score=57.11 Aligned_cols=61 Identities=16% Similarity=0.085 Sum_probs=39.7
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHh-hCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIK-SNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~-~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~ 120 (1604)
.|.+++++||.|||.++--..+..-.... ....-+.+++-+|..+=..-.+..|-..++..
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 78999999999999976444432211000 11123567777888887777777777766544
No 283
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.09 E-value=0.75 Score=57.24 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=29.7
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
.+++++|+|+|||..+..+..++.. .+.+++++.. ..+..+...
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~------~~~~v~yi~~-~~f~~~~~~ 186 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRE------SGGKILYVRS-ELFTEHLVS 186 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEeeH-HHHHHHHHH
Confidence 3789999999999988877776654 2344676654 344443333
No 284
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.07 E-value=0.65 Score=55.46 Aligned_cols=119 Identities=20% Similarity=0.176 Sum_probs=73.3
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh-HHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL-VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L-v~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
+.+.+++|||.|||..-.-++..... ..+.++..+|-..|-=. +..|.+...+.++++
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~---~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp------------------ 262 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVM---LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP------------------ 262 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHh---hccCcceEEEEeccchhhHHHHHHHHHHHhCCc------------------
Confidence 44679999999999876655544431 13455666777765222 222333333333333
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
=.+|-+|+-|...+. .+.+.++|.+|=+=+-..+..+..-|++|.......-.-|-||||-
T Consensus 263 -------~~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 263 -------LEVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred -------eEEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc
Confidence 345567777766655 3566789999988766555556667777765554445568899984
No 285
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.06 E-value=0.41 Score=58.54 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=32.6
Q ss_pred CCCCcHHHHHHHHHhhc--------cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 43 NFIPRIYQLKVFEVAKR--------RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~--------~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.+.-|.-|.+.+..++. .+++|++|+|+|||.++-.++.++.
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 45669999887766642 5789999999999998877776654
No 286
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.05 E-value=0.27 Score=61.29 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=30.7
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
.+++++++|+|||..+..+..++.+ ..++.+++|+... .+..+...
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~----~~~~~~v~yi~~~-~f~~~~~~ 177 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQ----NEPDLRVMYITSE-KFLNDLVD 177 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHH----hCCCCeEEEEEHH-HHHHHHHH
Confidence 4789999999999988777766554 2344557777543 44444333
No 287
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.05 E-value=0.95 Score=57.56 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=31.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
+++++++|+|||+.+..+..++.. ...+.+++|+.- ..++.+....++
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~----~~~g~~V~Yita-eef~~el~~al~ 364 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARR----LYPGTRVRYVSS-EEFTNEFINSIR 364 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----hCCCCeEEEeeH-HHHHHHHHHHHH
Confidence 789999999999987776665543 223445666554 456655544443
No 288
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.02 E-value=0.25 Score=61.30 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=28.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q 108 (1604)
.+++++++|+|||..+..+..++.+ ..++..++++.. ..+..+
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~----~~~~~~v~yi~~-~~~~~~ 180 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILE----NNPNAKVVYVSS-EKFTND 180 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHH----hCCCCcEEEEEH-HHHHHH
Confidence 3689999999999998777766654 233455677643 244443
No 289
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.01 E-value=0.27 Score=57.23 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=27.0
Q ss_pred CCCCcHHHHHHHHHhh---c---cCEEEEeCCCChHHHHHHHHHHH
Q 000379 43 NFIPRIYQLKVFEVAK---R---RNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l---~---~n~Iv~~~TGsGKTliailli~~ 82 (1604)
.+-+.+.+.+++..+. . +.+++.+++|+|||..+-.+...
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 3445555666666553 2 35789999999999887766443
No 290
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.98 E-value=0.22 Score=66.19 Aligned_cols=98 Identities=16% Similarity=0.288 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCC---CCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhC---
Q 000379 399 LHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL---THLTVAYLTGSTTSVDALTPKVQKEVLESFRG--- 472 (1604)
Q Consensus 399 ~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~---~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~--- 472 (1604)
...+.+.|...-......++||..+-...+.+...+.....+ ...+..+.-+.+ ..++.+++++|+.
T Consensus 507 ~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-------~~~~~~~l~~f~~~~~ 579 (705)
T TIGR00604 507 VRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-------AQETSDALERYKQAVS 579 (705)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-------cchHHHHHHHHHHHHh
Confidence 345555554443344467899999988888777766642110 011233333431 2466889999964
Q ss_pred -CCceEEEEc--cccccccCCCC--ccEEEEcCCCC
Q 000379 473 -GKVNLLFAT--DVIEEGMHVPN--CSYVIRFDLPK 503 (1604)
Q Consensus 473 -g~~~iLIaT--~vleeGIDip~--~nlVI~fD~p~ 503 (1604)
|.-.||+|+ ..+.||||+++ |..||...+|-
T Consensus 580 ~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 580 EGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred cCCceEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 455699998 88999999997 88999888775
No 291
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.96 E-value=0.24 Score=55.53 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=29.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
+.+++++|+|||...-.+..++.+ ..++.+|+++... .........++
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~----~~~~~~v~y~~~~-~f~~~~~~~~~ 84 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQK----QHPGKRVVYLSAE-EFIREFADALR 84 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH----HCTTS-EEEEEHH-HHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh----ccccccceeecHH-HHHHHHHHHHH
Confidence 689999999999965444444433 3345567776654 55554444444
No 292
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=93.79 E-value=0.34 Score=50.20 Aligned_cols=42 Identities=29% Similarity=0.458 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCc---eEEEEccc--cccccCCCC--ccEEEEcCCCC
Q 000379 462 VQKEVLESFRGGKV---NLLFATDV--IEEGMHVPN--CSYVIRFDLPK 503 (1604)
Q Consensus 462 ~r~~vl~~Fr~g~~---~iLIaT~v--leeGIDip~--~nlVI~fD~p~ 503 (1604)
+..++++.|++..- .||+++.- +.||||+|+ |+.||...+|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 33688999987543 58888876 999999997 88898877663
No 293
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=93.67 E-value=0.33 Score=47.39 Aligned_cols=113 Identities=20% Similarity=0.170 Sum_probs=66.6
Q ss_pred CcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHHHHHHHhCCCccccccccCCCCCccCCCccCCCCC
Q 000379 1076 SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPV 1155 (1604)
Q Consensus 1076 n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~ 1155 (1604)
|-=-|.|+||||+.+.|=.|+....-. ..+.||..=.+.||-+.=+.+-.. +..++...- ..|.-.|
T Consensus 14 n~laLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il~~--~~~~Lte~E---~~I~KRg------- 80 (132)
T COG1939 14 NGLALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALILKA--LLEFLTEEE---EEIVKRG------- 80 (132)
T ss_pred CHHHHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHHHH--HHHHhhHHH---HHHHHHh-------
Confidence 444699999999999998887765433 689999999999987765443322 111211110 0111111
Q ss_pred CCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCChHHHHHHHHHh
Q 000379 1156 PCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWL 1224 (1604)
Q Consensus 1156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G~~~a~~~~~~l 1224 (1604)
+.....+. .+.+ -+..=-.|..+|||||..|+..-.+.-..++.|.
T Consensus 81 ---------------RNaks~T~---~kn~-----dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~ 126 (132)
T COG1939 81 ---------------RNAKSGTK---PKNT-----DVETYRMSTGFEALIGYLYLTKQEERLEELLNKV 126 (132)
T ss_pred ---------------cccccCCC---CCCC-----ChHHHHHhhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 00000000 0000 0122235788999999999999988777777665
No 294
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.57 E-value=0.25 Score=61.68 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=31.6
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
.+++++++|+|||..+..+..++.. ..++.+++++.. ..+..+....+.
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~----~~~~~~v~yv~~-~~f~~~~~~~l~ 191 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIES----NFSDLKVSYMSG-DEFARKAVDILQ 191 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHH----hCCCCeEEEEEH-HHHHHHHHHHHH
Confidence 4789999999999877655554432 234556776665 356555555443
No 295
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=93.56 E-value=0.77 Score=62.38 Aligned_cols=101 Identities=15% Similarity=-0.003 Sum_probs=64.2
Q ss_pred CCCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000379 43 NFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~ 120 (1604)
.+.+.+-|.+++..+.. +=++|.++-|+|||.+.-.+. ..++ ..+..|+-++||- ..++.+++.+|+.
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~-~~~e-----~~G~~V~g~ApTg----kAA~~L~e~~Gi~ 448 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAR-EAWE-----AAGYRVVGGALAG----KAAEGLEKEAGIQ 448 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHH-HHHH-----HcCCeEEEEcCcH----HHHHHHHHhhCCC
Confidence 46789999999998753 346799999999998655443 3333 1345689999993 3455666555554
Q ss_pred EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
...+. .|+-....+...+..-++||+|||.++.
T Consensus 449 a~TIa----------------------------s~ll~~~~~~~~l~~~~vlVIDEAsMv~ 481 (1102)
T PRK13826 449 SRTLS----------------------------SWELRWNQGRDQLDNKTVFVLDEAGMVA 481 (1102)
T ss_pred eeeHH----------------------------HHHhhhccCccCCCCCcEEEEECcccCC
Confidence 33221 1110111122345566799999999874
No 296
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.30 E-value=0.91 Score=56.20 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=31.8
Q ss_pred CCCCCcHHHHHHHHHhh-----c---cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 42 INFIPRIYQLKVFEVAK-----R---RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-----~---~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
..+.-|.-|.+.+..++ + .+++|++++|+|||.++-.++.++.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~ 80 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE 80 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34556887877666553 1 6799999999999998877776654
No 297
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=1.5 Score=53.02 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=34.5
Q ss_pred CCCcHHHHHHHHHhhc--------cCEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 44 FIPRIYQLKVFEVAKR--------RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~--------~n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
+.-|.-|.+-+..++. .|++++++||+|||.++-.++.++..
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~ 68 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEE 68 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHh
Confidence 6779999888775542 77999999999999998888877655
No 298
>PRK06921 hypothetical protein; Provisional
Probab=93.06 E-value=0.27 Score=56.79 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=30.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q 108 (1604)
.++++.+++|+|||+.+..++.++.. . .+..++|+.. ..+..+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~----~-~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMR----K-KGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhh----h-cCceEEEEEH-HHHHHH
Confidence 56899999999999999888877764 1 1344666553 355443
No 299
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=92.93 E-value=0.2 Score=61.00 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=47.6
Q ss_pred CcHHHHHHHHHhh-------ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHH--HHHHHhh
Q 000379 46 PRIYQLKVFEVAK-------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ--YDVIRVH 116 (1604)
Q Consensus 46 pr~yQ~e~l~~~l-------~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~--~~~i~~~ 116 (1604)
+.+-|.++++.++ +.++.|.++-|+|||++.-.++..+ . ..++.+++++||-.-+... -..+++.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~-~-----~~~~~~~~~a~tg~AA~~i~~G~T~hs~ 75 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL-R-----SRGKKVLVTAPTGIAAFNIPGGRTIHSF 75 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh-c-----cccceEEEecchHHHHHhccCCcchHHh
Confidence 5677999988772 3778899999999999765554443 2 2456699999995544433 3445556
Q ss_pred cCCcE
Q 000379 117 TDFEV 121 (1604)
Q Consensus 117 ~~~~v 121 (1604)
+++.+
T Consensus 76 f~i~~ 80 (364)
T PF05970_consen 76 FGIPI 80 (364)
T ss_pred cCccc
Confidence 65544
No 300
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.57 E-value=0.34 Score=59.82 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=20.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|..+++.+.
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 69999999999999998887753
No 301
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.42 E-value=0.96 Score=47.75 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=27.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
++|.+++|+|||..+..++..... .+..++|+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh------cCCEEEEEECCcch
Confidence 678999999999998888776543 34446777665444
No 302
>PRK11054 helD DNA helicase IV; Provisional
Probab=92.39 E-value=0.47 Score=62.16 Aligned_cols=71 Identities=15% Similarity=0.068 Sum_probs=56.4
Q ss_pred CCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
..+.+-|.+++.... .+++|.+..|||||.+.+..+.+++... ......+++|+.|+..+....+.|...+
T Consensus 195 ~~L~~~Q~~av~~~~-~~~lV~agaGSGKT~vl~~r~ayLl~~~--~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVNGE-DSLLVLAGAGSGKTSVLVARAGWLLARG--QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhCCC-CCeEEEEeCCCCHHHHHHHHHHHHHHhC--CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 568899999987554 6789999999999999999888877521 1234569999999999988888887654
No 303
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.27 E-value=0.33 Score=63.60 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|-.+++.+.
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhcc
Confidence 48999999999999998887764
No 304
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.11 E-value=0.23 Score=65.46 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=67.0
Q ss_pred CCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEE
Q 000379 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEY 124 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~ 124 (1604)
.+.+-|.+++... .++++|.|..|||||.+.+..+.+++... .-+..++++|+-|+..+....+.+.+.++..
T Consensus 2 ~Ln~~Q~~av~~~-~g~~lV~AgpGSGKT~vL~~Ria~Li~~~--~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~---- 74 (672)
T PRK10919 2 RLNPGQQQAVEFV-TGPCLVLAGAGSGKTRVITNKIAHLIRGC--GYQARHIAAVTFTNKAAREMKERVAQTLGRK---- 74 (672)
T ss_pred CCCHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHHHHHHHhc--CCCHHHeeeEechHHHHHHHHHHHHHHhCcc----
Confidence 4778899998753 57899999999999999999998888521 1234569999999999998888887655311
Q ss_pred ECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHH
Q 000379 125 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158 (1604)
Q Consensus 125 ~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~ 158 (1604)
....|.|+|...|...
T Consensus 75 ------------------~~~~v~i~TfHS~~~~ 90 (672)
T PRK10919 75 ------------------EARGLMISTFHTLGLD 90 (672)
T ss_pred ------------------cccCcEEEcHHHHHHH
Confidence 0135778999887533
No 305
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.08 E-value=0.59 Score=56.45 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=30.0
Q ss_pred CCcHHHHHHHHHhhc--c--CEEEEeCCCChHHHHHHHHHHHHH
Q 000379 45 IPRIYQLKVFEVAKR--R--NTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~--~--n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
-.++...+.+..+.. . ++++.+|+|+|||..+..+...+.
T Consensus 18 ~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 18 LGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred cCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 345666666666543 2 689999999999999988877654
No 306
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.07 E-value=2.1 Score=45.55 Aligned_cols=121 Identities=14% Similarity=0.101 Sum_probs=59.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
+..|+.+|.|+||+..|..+++.++-. ..... -|..-.- ...+.....-.+..+..........
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ll~~---~~~~~----~c~~c~~----c~~~~~~~~~d~~~~~~~~~~~~i~----- 83 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARALLCS---NPNED----PCGECRS----CRRIEEGNHPDFIIIKPDKKKKSIK----- 83 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHC-T---T-CTT------SSSHH----HHHHHTT-CTTEEEEETTTSSSSBS-----
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHcCC---CCCCC----CCCCCHH----HHHHHhccCcceEEEecccccchhh-----
Confidence 347999999999999999998887641 11111 2222222 2233333333444443332211111
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCc--CccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 140 KEINKNDVLVMTPQILLDALRKAFL--SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q~Ll~~l~~~~~--~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
-+.+.+....-.. ......++||||||.+... ..+.+++ .+...+...+++++|-.+
T Consensus 84 ------------i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~-a~NaLLK-~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 84 ------------IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE-AQNALLK-TLEEPPENTYFILITNNP 142 (162)
T ss_dssp ------------HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-HHHHHHH-HHHSTTTTEEEEEEES-G
T ss_pred ------------HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-HHHHHHH-HhcCCCCCEEEEEEECCh
Confidence 1222222222111 1246889999999999653 3444444 333334445555555443
No 307
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.05 E-value=1.6 Score=53.97 Aligned_cols=55 Identities=20% Similarity=0.103 Sum_probs=32.6
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCc
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFE 120 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~ 120 (1604)
.+++++++|+|||.++..++.++.. ...+..++-+.+ ++-+.+|...+....++.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~-----~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKK-----KGLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 3678899999999999888876543 223434444443 233333444444455554
No 308
>PRK08116 hypothetical protein; Validated
Probab=91.78 E-value=1.5 Score=50.87 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHhh----------ccC--EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH
Q 000379 46 PRIYQLKVFEVAK----------RRN--TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 46 pr~yQ~e~l~~~l----------~~n--~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
..+.|..++..+. ..+ +++++++|+|||+.|..++.++.. .+..++|+ +...|..+...
T Consensus 89 ~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~------~~~~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 89 FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIE------KGVPVIFV-NFPQLLNRIKS 159 (268)
T ss_pred CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEE-EHHHHHHHHHH
Confidence 3455655555443 234 899999999999999988887765 23335554 44466655543
No 309
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.59 E-value=0.31 Score=52.66 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=30.0
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q 108 (1604)
+.|+++.+++|+|||+.|..++.++.. .+..++|+. ...|+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~------~g~~v~f~~-~~~L~~~ 89 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR------KGYSVLFIT-ASDLLDE 89 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH------TT--EEEEE-HHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc------CCcceeEee-cCceecc
Confidence 388999999999999999999888775 344466654 4455543
No 310
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.57 E-value=0.74 Score=52.10 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=26.5
Q ss_pred HHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 48 IYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 48 ~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
......+..+. .+.+++++++|+|||..+..+..+...
T Consensus 26 ~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 26 AELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred HHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34445555442 256899999999999988877665543
No 311
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=91.47 E-value=0.12 Score=60.62 Aligned_cols=63 Identities=21% Similarity=0.199 Sum_probs=48.5
Q ss_pred hhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHH
Q 000379 1512 TSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLH 1591 (1604)
Q Consensus 1512 ~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~l~ 1591 (1604)
-.|+||+|+-....|.|+.-+- +.++ ..|...|++.. .-++.|.| +|||.||..||+.+|.
T Consensus 379 CiLhEy~q~~lk~~pvyef~e~---------~n~s-----tpysa~v~~d~----~~yGsG~g-~sKK~Ak~~AAR~tLe 439 (650)
T KOG4334|consen 379 CILHEYAQQCLKSLPVYEFAEN---------DNNS-----TPYSAGVLPDL----FPYGSGVG-ASKKTAKLVAARDTLE 439 (650)
T ss_pred ehHHHHHHHHhhhcceeehhhc---------cCCC-----Ccccccccccc----cccccccc-cchHHHHHHHHHHHHH
Confidence 7899999999999999987653 3332 35777777743 33445666 6799999999999998
Q ss_pred HH
Q 000379 1592 EL 1593 (1604)
Q Consensus 1592 ~l 1593 (1604)
.|
T Consensus 440 iL 441 (650)
T KOG4334|consen 440 IL 441 (650)
T ss_pred Hh
Confidence 77
No 312
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.46 E-value=0.39 Score=55.61 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=21.4
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.++++.+|+|+|||.+|-.+...+.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999988877654
No 313
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.41 E-value=2.3 Score=49.03 Aligned_cols=119 Identities=19% Similarity=0.137 Sum_probs=64.4
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC--hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT--VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt--~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~ 137 (1604)
..+.+++++|+|||..+..++..+.. ...+..++-+.+ ...+.||..... ..++.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~-----~~~~v~~i~~D~~ri~~~~ql~~~~~-~~~~~~~--------------- 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG-----KKKTVGFITTDHSRIGTVQQLQDYVK-TIGFEVI--------------- 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEEecCCCCHHHHHHHHHHhh-hcCceEE---------------
Confidence 45678899999999988777665432 123333444433 256677765433 2222221
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 138 w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
...++..+.+.+..- -...+.++||+|-+=+...+...-.-|..+.....+.-.+|-|+||-
T Consensus 135 ----------~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~ 196 (270)
T PRK06731 135 ----------AVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 196 (270)
T ss_pred ----------ecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc
Confidence 112444454444321 11235799999998665444343444444443333333467788874
No 314
>PLN03025 replication factor C subunit; Provisional
Probab=91.31 E-value=0.88 Score=54.41 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhc----cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 48 IYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 48 ~yQ~e~l~~~l~----~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+...+.+..+.. .++++++|.|+|||..+..+++++.
T Consensus 19 ~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 19 EDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 344444444432 5689999999999999988887764
No 315
>PRK09183 transposase/IS protein; Provisional
Probab=91.18 E-value=0.91 Score=52.34 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=29.6
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q 108 (1604)
+.|+++.+|+|+|||..+..+...... .+..++|+. ...|..+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~------~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR------AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEe-HHHHHHH
Confidence 488999999999999998887655443 234466654 3355443
No 316
>PRK08939 primosomal protein DnaI; Reviewed
Probab=90.89 E-value=0.66 Score=54.75 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=22.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
+++++.+++|+|||+.+..++.++..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999988888764
No 317
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=90.88 E-value=2.3 Score=49.62 Aligned_cols=113 Identities=13% Similarity=0.048 Sum_probs=59.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh-cCCcEEEEECCCCCCccchh--
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH-TDFEVEEYYGAKGVDEWDSQ-- 136 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~-~~~~v~~~~G~~~~~~~~~~-- 136 (1604)
.-+++.+++|+|||..+..++.+... ..+..++|+.-- .-..+....+... .+..+..... ...+..+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~-----~~g~~vl~iS~E-~~~~~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~ 101 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLIT-----QHGVRVGTISLE-EPVVRTARRLLGQYAGKRLHLPDT---VFIYTLEEF 101 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHH-----hcCceEEEEEcc-cCHHHHHHHHHHHHhCCCcccCCc---cccccHHHH
Confidence 45789999999999988887766654 114457777643 2234445444332 3433322111 1112222
Q ss_pred -HHHHhcC-CCcEEEE------cHHHHHHHHHhcCcCccceeEEEEeCcccccC
Q 000379 137 -CWQKEIN-KNDVLVM------TPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1604)
Q Consensus 137 -~w~~~~~-~~~ViV~------T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~ 182 (1604)
.|...+. ...+.+- |...+...+..- ..-..+++||+|..+.+..
T Consensus 102 ~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~-~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 102 DAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM-AVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHH-HhcCCceEEEECCHHHHhc
Confidence 2222222 2223221 445555554432 1223688999999888754
No 318
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.86 E-value=0.64 Score=57.17 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=50.2
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
+.-.||.+..|||||.+|+-.+.+++..-+..-.++-|+++.|++.+..=...++-
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLP------------------------ 281 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLP------------------------ 281 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhch------------------------
Confidence 34468899999999999999888887633333334449999999887653333322
Q ss_pred HHhcCCCcEEEEcHHHHH
Q 000379 139 QKEINKNDVLVMTPQILL 156 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll 156 (1604)
.++...|+..|++-+.
T Consensus 282 --eLGe~~V~q~Tf~e~a 297 (747)
T COG3973 282 --ELGEEGVVQETFEEWA 297 (747)
T ss_pred --hhccCceeeccHHHHH
Confidence 2335678888888764
No 319
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.83 E-value=2 Score=51.40 Aligned_cols=102 Identities=20% Similarity=0.160 Sum_probs=54.0
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChh--hHHHHHHHHHhhcCCcEEEEECCCCCCccchhH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH--LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~--Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~ 137 (1604)
+.+.+++|+|+|||..+..++..+.. ...+..++-+.+-- -+.||..... ..++.+.
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~-----~g~~V~lItaDtyR~gAveQLk~yae-~lgvpv~--------------- 265 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLK-----QNRTVGFITTDTFRSGAVEQFQGYAD-KLDVELI--------------- 265 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCCccCccHHHHHHHHhh-cCCCCEE---------------
Confidence 44678999999999988887766543 12344444444422 2445544332 2332221
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHH
Q 000379 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193 (1604)
Q Consensus 138 w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~ 193 (1604)
++.+|+.+.+.+..-. ...+.++|++|=+=+...+...-.-+..+
T Consensus 266 ----------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l 310 (407)
T PRK12726 266 ----------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAY 310 (407)
T ss_pred ----------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHH
Confidence 2235666655444211 12457899999875543332333333433
No 320
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.67 E-value=0.86 Score=46.25 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=18.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~ 83 (1604)
+++.+|.|+|||..+-.++.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5899999999999887776654
No 321
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.56 E-value=2.2 Score=53.28 Aligned_cols=119 Identities=18% Similarity=0.158 Sum_probs=59.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
+.+.++++||+|||..+..++..+.. ....++..++-+.+ +.-...|.......+++.+..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~---~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~--------------- 412 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAA---QHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHE--------------- 412 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH---hcCCCceEEEecccccccHHHHHHHhhcccCceeEe---------------
Confidence 45678899999999988877766543 11123333333333 322222222222233332211
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCC
Q 000379 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~ 211 (1604)
+.+...+...+.. +.+.++||+|.+=....+......+..+.. ....-.+|.+++++.
T Consensus 413 ----------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss 470 (559)
T PRK12727 413 ----------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAH 470 (559)
T ss_pred ----------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCC
Confidence 1133344444442 346789999999665433233322332221 122346778888753
No 322
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.41 E-value=1.8 Score=56.53 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=62.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChh--hHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH--LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~--Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
+.+++|||+|||.+...+...+.. ..+.++..++-+.+-- -++|+ ..+.+..++.+
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~---~~G~kkV~lit~Dt~RigA~eQL-~~~a~~~gvpv------------------ 245 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVA---REGADQLALLTTDSFRIGALEQL-RIYGRILGVPV------------------ 245 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHH---HcCCCeEEEecCcccchHHHHHH-HHHHHhCCCCc------------------
Confidence 458899999999988777665432 1222343444444321 23333 33333333222
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
.++.+++.+.+.+.. +.+.++|+||=+=+...+......+..+.....+.-.+|-|+||-
T Consensus 246 -------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~ 305 (767)
T PRK14723 246 -------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS 305 (767)
T ss_pred -------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC
Confidence 233467777666653 346689999988665444333333333322222334568888883
No 323
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.29 E-value=1.3 Score=51.92 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=20.3
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
.+++++|||+|||..+..++.++..
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4668899999999998888776643
No 324
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.26 E-value=2.1 Score=52.51 Aligned_cols=57 Identities=16% Similarity=-0.023 Sum_probs=34.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec-ChhhHHHHHHHHHhhcCCcEEE
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP-TVHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP-t~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
+.+++++|+|||..+..++.++.. . ..+..|+-+. .++-+.+|.+...+..++++..
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~----~-G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~ 160 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQR----K-GFKPCLVCADTFRAGAFDQLKQNATKARIPFYG 160 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----C-CCCEEEEcCcccchhHHHHHHHHhhccCCeEEe
Confidence 458899999999988887766533 1 2333333343 3555555655555556655543
No 325
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=90.01 E-value=3.7 Score=52.39 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=44.7
Q ss_pred HHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 53 VFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 53 ~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
+++...++-.++.+|=|.|||.+..+++..++. . .+.+|++.+|...-+.+..+.++..+
T Consensus 181 ~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~---f--~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 181 IFDEYGKCYTAATVPRRCGKTTIMAIILAAMIS---F--LEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred HHHHHhhcceEEEeccCCCcHHHHHHHHHHHHH---h--cCCeEEEECCChhhHHHHHHHHHHHH
Confidence 344445577888999999999988877666553 1 24569999999888888887766654
No 326
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=89.91 E-value=1.3 Score=57.10 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+|++++.|+|||.++..+.+.+.
T Consensus 41 yLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999998888764
No 327
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=89.90 E-value=1.5 Score=52.41 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=33.5
Q ss_pred CCcHHHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 45 IPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
...|||...+..+.. +-.++.+|.|+|||..|..+++.++
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 457999999998874 3378999999999999998888765
No 328
>PHA02533 17 large terminase protein; Provisional
Probab=89.88 E-value=3.7 Score=52.29 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=51.2
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
..+.++++|.+++..+. ++-.++..+=..|||.++..++.+..- ..++..+++++|+..-+....+.++..
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~----~~~~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVC----FNKDKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 45889999999998764 344578888999999987765443322 123457999999988777766666643
No 329
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=89.87 E-value=0.53 Score=51.80 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=19.6
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
.++|+++|.|+|||..|-.+..++
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCccchhHHHHHHHhcc
Confidence 358999999999999887776654
No 330
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=89.75 E-value=0.37 Score=60.22 Aligned_cols=154 Identities=21% Similarity=0.195 Sum_probs=81.9
Q ss_pred CCCCcHHHHHHHHHhh-----------ccCEEEEeCCCChHHHHHHHHHHH-HHHHHhhCCCCeEEEEEecChhhHHHHH
Q 000379 43 NFIPRIYQLKVFEVAK-----------RRNTIAVLETGAGKTMIAVMLIKD-IAQAIKSNGFKKLIIFLAPTVHLVHQQY 110 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-----------~~n~Iv~~~TGsGKTliailli~~-~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~ 110 (1604)
.-.+...|.|++-.+- +-..+|.+.-|.||-.....+|.+ .+ .++++-.||-|- ..|-..-.
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyL-----kGRKrAlW~SVS-sDLKfDAE 335 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYL-----KGRKRALWFSVS-SDLKFDAE 335 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhh-----cccceeEEEEec-cccccchh
Confidence 3456789999886552 134677777777775533333333 33 345554555554 47766666
Q ss_pred HHHHhh--cCCcEEEEE----CCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHh-------cC-----cCccce-eE
Q 000379 111 DVIRVH--TDFEVEEYY----GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK-------AF-----LSLDIV-CF 171 (1604)
Q Consensus 111 ~~i~~~--~~~~v~~~~----G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~-------~~-----~~l~~i-~l 171 (1604)
+.++.. +++.|..+. +-.+.+. + .--.-.|+++||..|...-.. .+ +.-.++ .+
T Consensus 336 RDL~DigA~~I~V~alnK~KYakIss~e------n-~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGv 408 (1300)
T KOG1513|consen 336 RDLRDIGATGIAVHALNKFKYAKISSKE------N-TNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGV 408 (1300)
T ss_pred hchhhcCCCCccceehhhcccccccccc------c-CCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhcccee
Confidence 666653 234443331 1111110 0 001347999999888543221 01 011222 59
Q ss_pred EEEeCcccccCCCh--------HHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 172 IVIDECHHATGNHP--------YTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 172 lI~DEaH~~~~~~~--------~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
|||||||.+.+-.| ..+-+-++ ...-+..|++--|||-
T Consensus 409 IvfDECHkAKNL~p~~~~k~TKtG~tVLdL-Qk~LP~ARVVYASATG 454 (1300)
T KOG1513|consen 409 IVFDECHKAKNLVPTAGAKSTKTGKTVLDL-QKKLPNARVVYASATG 454 (1300)
T ss_pred EEehhhhhhcccccccCCCcCcccHhHHHH-HHhCCCceEEEeeccC
Confidence 99999999975322 12222222 2223567899999983
No 331
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.69 E-value=1.5 Score=54.83 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.3
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+..|+++|.|+|||.+|..+++.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHc
Confidence 4689999999999999988877653
No 332
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.45 E-value=1.2 Score=56.93 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=25.7
Q ss_pred HHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 49 YQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 49 yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+-.+.+..+.. +-+|+++|.|+|||.+|..+++.+.
T Consensus 22 ~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 22 HVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444544442 3359999999999999988887763
No 333
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.39 E-value=1.7 Score=53.58 Aligned_cols=122 Identities=15% Similarity=0.238 Sum_probs=86.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHHhcCCCc
Q 000379 67 ETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKND 146 (1604)
Q Consensus 67 ~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ 146 (1604)
-+++||+-..++.++++.. .+-++.+++.+-+.+=+.|.+.++..+-++++..+||......-+...-.-..+...
T Consensus 365 lvF~gse~~K~lA~rq~v~----~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw 440 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVA----SGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIW 440 (593)
T ss_pred heeeecchhHHHHHHHHHh----ccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCee
Confidence 3689999999999998876 334555888888889999999999867789999999986543211111111225678
Q ss_pred EEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCCCCC
Q 000379 147 VLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRK 214 (1604)
Q Consensus 147 ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~~~~ 214 (1604)
|+||| +.+.+| +++..+++||-+..-...- .| .+|| |+||++....
T Consensus 441 vLicT-----dll~RG-iDf~gvn~VInyD~p~s~~---------sy------ihrI-GRtgRag~~g 486 (593)
T KOG0344|consen 441 VLICT-----DLLARG-IDFKGVNLVINYDFPQSDL---------SY------IHRI-GRTGRAGRSG 486 (593)
T ss_pred EEEeh-----hhhhcc-ccccCcceEEecCCCchhH---------HH------HHHh-hccCCCCCCc
Confidence 99999 456677 7899999999977643311 11 1344 9999987653
No 334
>CHL00181 cbbX CbbX; Provisional
Probab=89.35 E-value=1.7 Score=50.89 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=20.9
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.++++.+|+|+|||.+|-.+...+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999998877654
No 335
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=89.26 E-value=1.4 Score=58.60 Aligned_cols=89 Identities=13% Similarity=0.027 Sum_probs=66.3
Q ss_pred CcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEE
Q 000379 46 PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125 (1604)
Q Consensus 46 pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 125 (1604)
+.+-|.+++.. ..++++|.+..|||||.+.+..|.+++.. ..-+..++++|+.|+.-+.+..+.+.+.++..
T Consensus 2 Ln~~Q~~av~~-~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~--~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~----- 73 (664)
T TIGR01074 2 LNPQQQEAVEY-VTGPCLVLAGAGSGKTRVITNKIAYLIQN--CGYKARNIAAVTFTNKAAREMKERVAKTLGKG----- 73 (664)
T ss_pred CCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHh--cCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc-----
Confidence 57889888865 35789999999999999999998888751 11234569999999888888888887655311
Q ss_pred CCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHH
Q 000379 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159 (1604)
Q Consensus 126 G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l 159 (1604)
...+|-|+|...|...+
T Consensus 74 -----------------~~~~v~v~TfHs~a~~i 90 (664)
T TIGR01074 74 -----------------EARGLTISTFHTLGLDI 90 (664)
T ss_pred -----------------ccCCeEEEeHHHHHHHH
Confidence 02468899998885443
No 336
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.08 E-value=1.4 Score=56.25 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|++++.|+|||.++..+++.+.
T Consensus 41 ~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999999888764
No 337
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.02 E-value=1.1 Score=57.24 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.5
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
..+|+.+|.|+|||.+|..+++.+.
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcc
Confidence 4478999999999999999888764
No 338
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=88.97 E-value=3.9 Score=50.47 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=36.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCcEEE
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
+++++++|+|||.++.-++.++.. ....+.+++=+.+ ++-+.+|.+.+....++++..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~----~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKK----KQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH----hCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 568899999999999988877542 1234444555543 344445555555556665543
No 339
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=88.87 E-value=1.6 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~ 82 (1604)
.+.|+++|.|+|||.+|-++...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHh
Confidence 77999999999999998877654
No 340
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.80 E-value=4.4 Score=49.33 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=61.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~ 140 (1604)
+++++|+|+|||.++..++.+... ....+..++-+.+ +..+..|........++.+.
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~----~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~------------------ 283 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFL----HMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY------------------ 283 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----hcCCeEEEecccchhhhHHHHHHHHHHhcCCCee------------------
Confidence 568899999999999888765432 1223334444444 33333333333223332221
Q ss_pred hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcC---CCCcEEEEeccCC
Q 000379 141 EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD---NKPKVFGMTASPV 211 (1604)
Q Consensus 141 ~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~---~~p~iLgLTATP~ 211 (1604)
.+..+..+...+. -...++||+|=+-+...+.....-|..+..... +...+|-|+||-.
T Consensus 284 -------~~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~ 345 (432)
T PRK12724 284 -------PVKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS 345 (432)
T ss_pred -------ehHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC
Confidence 1111223333332 246789999987665444344455555554321 2246788898843
No 341
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.79 E-value=1.6 Score=55.45 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|..+++.+.
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 68999999999999998887764
No 342
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=88.72 E-value=1.7 Score=54.98 Aligned_cols=68 Identities=13% Similarity=0.033 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhc----------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 48 IYQLKVFEVAKR----------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 48 ~yQ~e~l~~~l~----------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
|+|.-++..+.+ +.+++..+=|-|||..+..++...+- .....+..+++.++++.-+...++.++...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~--~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLF--LDGEPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHh--cCCccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 678887777653 44788899999999977766554432 112345669999999988888888877755
No 343
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.65 E-value=1.6 Score=54.74 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=19.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+|+++|.|+|||.+|-.++..+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 68999999999999988877653
No 344
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=88.62 E-value=2.3 Score=54.87 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.4
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+.+|++++.|+|||.+|..+++.+.
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4479999999999999998887764
No 345
>PRK10867 signal recognition particle protein; Provisional
Probab=88.51 E-value=4.3 Score=50.16 Aligned_cols=57 Identities=25% Similarity=0.176 Sum_probs=34.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec-ChhhHHHHHHHHHhhcCCcEE
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP-TVHLVHQQYDVIRVHTDFEVE 122 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP-t~~Lv~Q~~~~i~~~~~~~v~ 122 (1604)
+++++++|+|||.++.-++.++.. ...++..++=+. .++-+..|.+.+....++.+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~----~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKK----KKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH----hcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 568899999999999988877654 213343444444 344433334444445565543
No 346
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=88.33 E-value=1.7 Score=52.64 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=25.2
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP 101 (1604)
-+.+++++|+|||+..-.+-.+..+ .++..+++++..
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~----~~~~a~v~y~~s 151 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALA----NGPNARVVYLTS 151 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHh----hCCCceEEeccH
Confidence 3679999999999976655544443 445555666654
No 347
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=88.30 E-value=2.8 Score=61.63 Aligned_cols=134 Identities=18% Similarity=0.138 Sum_probs=76.1
Q ss_pred CCCCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC
Q 000379 43 NFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~ 119 (1604)
.+.+.+-|.+++..++. +=.||.++.|+|||.+.-.++ .+++ ..+..|+.++||---+ +.+...++.
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~-~~~~-----~~G~~V~~lAPTgrAA----~~L~e~~g~ 496 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLL-HLAS-----EQGYEIQIITAGSLSA----QELRQKIPR 496 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHH-HHHH-----hcCCeEEEEeCCHHHH----HHHHHHhcc
Confidence 46788999999999875 346788999999998654443 3333 2356799999995443 444443333
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCC
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~ 199 (1604)
.... ...|...+... .-..|.+.|+ .....+..-++||+|||-++... .+..+++. ....
T Consensus 497 ~A~T-----------i~~~l~~l~~~-~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~~-~~~~Ll~~---a~~~ 556 (1960)
T TIGR02760 497 LAST-----------FITWVKNLFND-DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSNN-ELLKLIDK---AEQH 556 (1960)
T ss_pred hhhh-----------HHHHHHhhccc-ccchhHHHhh----cccCCCCCCCEEEEECCCCCCHH-HHHHHHHH---Hhhc
Confidence 2211 11233322111 1223444443 12234456789999999987432 33333331 1223
Q ss_pred CCcEEEE
Q 000379 200 KPKVFGM 206 (1604)
Q Consensus 200 ~p~iLgL 206 (1604)
..+++++
T Consensus 557 garvVlv 563 (1960)
T TIGR02760 557 NSKLILL 563 (1960)
T ss_pred CCEEEEE
Confidence 4566655
No 348
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=88.28 E-value=6.5 Score=45.66 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=19.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
+++++++|+|||.++..++..+..
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~ 98 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKK 98 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh
Confidence 457799999999998888876643
No 349
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=88.19 E-value=0.81 Score=61.14 Aligned_cols=71 Identities=15% Similarity=0.033 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
.+.+-|.+++... ..+++|.|..|||||.+.+..|.+++... .-+...+|+|+-|+..+....+.+.+.++
T Consensus 4 ~Ln~~Q~~av~~~-~g~~lV~AgaGSGKT~~L~~Ria~Li~~~--~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVAAP-PGNLLVLAGAGSGKTRVLTHRIAWLLSVE--NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHcCC-CCCEEEEecCCCCHHHHHHHHHHHHHHcC--CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4788999998653 57899999999999999999988887521 12345699999999999988888887653
No 350
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=88.17 E-value=0.96 Score=60.45 Aligned_cols=71 Identities=18% Similarity=0.060 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
.+.+-|.+++... .++++|.|..|||||.+.+..|.+++... .-+...+|+|+-|+..+....+.+.+.++
T Consensus 9 ~Ln~~Q~~av~~~-~g~~lV~AgaGSGKT~vl~~Ria~Li~~~--~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP-LGNMLVLAGAGSGKTRVLVHRIAWLMQVE--NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHHHHHHHcC--CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4788999998754 57899999999999999999888887521 12345699999999999988888887653
No 351
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=88.03 E-value=1 Score=53.30 Aligned_cols=56 Identities=27% Similarity=0.295 Sum_probs=39.4
Q ss_pred CcHHHHHHHHHhh--ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 46 PRIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 46 pr~yQ~e~l~~~l--~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
..+.|.+.+..+. +.|+||+++||||||...-.++..+.. ..+..+++.+=.+.+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~----~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVA----SAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc----CCCCceEEEecCCccc
Confidence 4567888888776 489999999999999876555544322 2234567777777676
No 352
>PRK04195 replication factor C large subunit; Provisional
Probab=87.98 E-value=2.3 Score=53.94 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
+.+++++|+|+|||..+-.++.++
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999887776653
No 353
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=87.93 E-value=1 Score=53.48 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHhh--ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 46 PRIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 46 pr~yQ~e~l~~~l--~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
..+.|.+.+..+. +.|++|+++||||||...-.++.++.. ..+..+++.+=.+.+|
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~----~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVI----QDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhh----cCCCceEEEEcCCCcc
Confidence 3456888888774 489999999999999766555554422 2344567777777766
No 354
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=87.90 E-value=1.5 Score=50.12 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=27.3
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP 101 (1604)
.-++|.+++|+|||..++-++.+... ..+..++|+..
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~-----~~g~~vly~s~ 50 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAK-----KQGKPVLFFSL 50 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH-----hCCCceEEEeC
Confidence 34678999999999988888777665 11445788774
No 355
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.88 E-value=2.5 Score=53.47 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|..+++++.
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 49999999999999988877764
No 356
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=87.88 E-value=0.61 Score=51.27 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=23.4
Q ss_pred ceeEEEEeCcccccCCChH-----HHHHHHHHhh-cCCCCcEEEEeccCC
Q 000379 168 IVCFIVIDECHHATGNHPY-----TKIMKEFYHK-SDNKPKVFGMTASPV 211 (1604)
Q Consensus 168 ~i~llI~DEaH~~~~~~~~-----~~im~~~~~~-~~~~p~iLgLTATP~ 211 (1604)
.-.++|+||||........ ...+ .++.. ....--++++|=+|.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~-~~l~~hRh~g~diiliTQ~~~ 127 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEII-EFLAQHRHYGWDIILITQSPS 127 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHH-HGGGGCCCTT-EEEEEES-GG
T ss_pred CCcEEEEECChhhcCCCccccccchHHH-HHHHHhCcCCcEEEEEeCCHH
Confidence 4479999999998755333 2344 33332 334567888886653
No 357
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=87.67 E-value=3.2 Score=48.93 Aligned_cols=54 Identities=33% Similarity=0.422 Sum_probs=36.9
Q ss_pred HHHHHHHHHhh--ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 48 IYQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 48 ~yQ~e~l~~~l--~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
+-|.+.+..+. +.|++|+++||||||..+-.++..+.. ..+..+++.+=.+.+|
T Consensus 119 ~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~----~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 119 AAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAK----NDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc----cCCCceEEEECCchhh
Confidence 34566666665 489999999999999877665544321 2234567777777676
No 358
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=87.66 E-value=3.4 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.6
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
..++.+|.|+|||..|..+++.++.
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4789999999999999888887753
No 359
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.66 E-value=1.9 Score=52.56 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+++.+|.|+|||..|-.+++.+.
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHhc
Confidence 58999999999999988877653
No 360
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.65 E-value=4.9 Score=49.35 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=59.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh-HHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL-VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L-v~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~ 140 (1604)
+.++++||+|||.....++..... ..+..+..++.+++.-. +.+|...+.+..++.+...
T Consensus 194 i~lvGpnG~GKTTtlakLA~~~~~---~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v---------------- 254 (420)
T PRK14721 194 YALIGPTGVGKTTTTAKLAARAVI---RHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSI---------------- 254 (420)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---hcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecC----------------
Confidence 568899999999877665543322 12234445666666222 3344445555555544322
Q ss_pred hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 141 EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 141 ~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
.++..+...+. .+.+.+++++|.+=+...+......+..+.......-.+|.|+||-
T Consensus 255 ---------~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~ 311 (420)
T PRK14721 255 ---------KDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATS 311 (420)
T ss_pred ---------CCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCC
Confidence 22222222222 2456788999986222221122233333221122234568899984
No 361
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=87.47 E-value=4.1 Score=38.08 Aligned_cols=79 Identities=27% Similarity=0.325 Sum_probs=54.7
Q ss_pred hhhhhhhHHHHHHHHHH--HhhCCCCCcchHHHHHHHhhchHHHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCC
Q 000379 1080 LELLGDSVLKYAVSCHL--FLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPC 1157 (1604)
Q Consensus 1080 LE~LGDs~Lk~~~s~~l--~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~ 1157 (1604)
|.-+|||...|+.|..| |.-+|+-. -|-|..|+..-..-||...+.-.
T Consensus 3 Lak~GDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiAl~~a~L~~~~~PR-------------------- 52 (120)
T PF11469_consen 3 LAKFGDSLVNFLFSLALSEYLGRPTGD----------RVPNASLAIALELAGLSHLLPPR-------------------- 52 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS-----------------HHHHHHHHHHTTGGGCS--C--------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHHhhhhhCccc--------------------
Confidence 67799999999999988 56666532 38899999988888887766511
Q ss_pred CCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCCh--HHHHHHHH
Q 000379 1158 ECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL--IAALYMMK 1222 (1604)
Q Consensus 1158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G~--~~a~~~~~ 1222 (1604)
+....-.|..||+|.-+|+.|-+ +.|..+++
T Consensus 53 ----------------------------------~dkh~kGd~aEA~iAyAWLeg~it~eEaveil~ 85 (120)
T PF11469_consen 53 ----------------------------------TDKHGKGDIAEALIAYAWLEGKITIEEAVEILK 85 (120)
T ss_dssp ----------------------------------GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred ----------------------------------ccccCccHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 11234579999999999999874 56666553
No 362
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=87.13 E-value=1.9 Score=54.42 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.7
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+.+|+++|.|+|||.+|-.+++.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4589999999999999998887764
No 363
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.09 E-value=5.6 Score=47.51 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHhhc----cCEEEEeCCCChHHHHHHHHHHHH
Q 000379 46 PRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 46 pr~yQ~e~l~~~l~----~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
-+..+.+.+..+.+ .+++++++.|+|||.++-.+..++
T Consensus 21 g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 21 GQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555555543 358999999999999888776665
No 364
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.03 E-value=2.1 Score=54.39 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|..+++.+.
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999998887764
No 365
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=87.02 E-value=1.5 Score=56.50 Aligned_cols=80 Identities=10% Similarity=0.032 Sum_probs=57.5
Q ss_pred CCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC----CceEEEEcccccccc
Q 000379 413 TQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG----KVNLLFATDVIEEGM 488 (1604)
Q Consensus 413 ~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g----~~~iLIaT~vleeGI 488 (1604)
..++++|-+.+......++..|... +. -...+.|.. ..+...+++|++. +-.||++|+.+.|||
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~--l~--~~~l~qg~~--------~~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELG--IP--AEIVIQSEK--------NRLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhh--cC--CCEEEeCCC--------ccHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 3457888888888888888887642 11 234455641 1346789999974 788999999999999
Q ss_pred CC--------C--CccEEEEcCCCCC
Q 000379 489 HV--------P--NCSYVIRFDLPKT 504 (1604)
Q Consensus 489 Di--------p--~~nlVI~fD~p~s 504 (1604)
|+ | .|..||...+|-.
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF~ 562 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPFG 562 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCCC
Confidence 99 3 3999998777643
No 366
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=86.99 E-value=2.9 Score=52.97 Aligned_cols=127 Identities=15% Similarity=0.147 Sum_probs=80.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC-----CcEEEEECCCCCCccc
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD-----FEVEEYYGAKGVDEWD 134 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~-----~~v~~~~G~~~~~~~~ 134 (1604)
+-+++..|=-.|||.+.+..|..++. .-++.++++.+|....++...++++..+. ..+....|. .. .
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~----s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I-~-- 326 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALA----TFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TI-S-- 326 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHH----hCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EE-E--
Confidence 55788899999999977754443432 23567799999999999999998887532 123233331 11 0
Q ss_pred hhHHHHhcC-C--CcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEecc
Q 000379 135 SQCWQKEIN-K--NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209 (1604)
Q Consensus 135 ~~~w~~~~~-~--~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTAT 209 (1604)
-.+. + ..|.+.+. -..+.+.-..++++|+|||+.+..+ .+..++- +. ....|+++.+|-|
T Consensus 327 -----i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~-al~~ilp-~l--~~~n~k~I~ISS~ 389 (738)
T PHA03368 327 -----FSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD-AVQTIMG-FL--NQTNCKIIFVSST 389 (738)
T ss_pred -----EEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH-HHHHHHH-HH--hccCccEEEEecC
Confidence 0111 1 24555432 1223344557999999999999764 5555552 22 2347899999866
No 367
>PTZ00293 thymidine kinase; Provisional
Probab=86.88 E-value=2 Score=47.33 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=25.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt 102 (1604)
.++++|+|+|||...+..+..... .+++++++-|.
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~------ag~kv~~~kp~ 41 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTY------SEKKCVVIKYS 41 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHH------cCCceEEEEec
Confidence 368999999999876666655433 44558888886
No 368
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=86.85 E-value=2.2 Score=55.18 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=20.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
.|+.++.|+|||.+|..+++.+.-
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhh
Confidence 589999999999999998877653
No 369
>PF13173 AAA_14: AAA domain
Probab=86.82 E-value=4.3 Score=41.17 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=19.9
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+-+++.+|.|+|||.++-.++..+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4478999999999998777766553
No 370
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.77 E-value=0.54 Score=53.48 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=21.4
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
+.|+++.+|||||||+.|--+++.+
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~L 121 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKIL 121 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHh
Confidence 5899999999999999988776543
No 371
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=86.72 E-value=7.2 Score=41.89 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=20.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
+++.+++|+|||..+..++..+.+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 468899999999999888776654
No 372
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=86.71 E-value=1.9 Score=57.64 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+|++++.|+|||.+|..+.+.+.
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999888764
No 373
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=86.67 E-value=1.7 Score=55.87 Aligned_cols=156 Identities=11% Similarity=0.120 Sum_probs=91.9
Q ss_pred CCCCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH-HHhhc-
Q 000379 43 NFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV-IRVHT- 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~-i~~~~- 117 (1604)
.....|||.|.++.+-. +.+.+..++-+|||.+.+..+-+.+. ..+. .++++.||..++..+.+. |.-.+
T Consensus 14 ~~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~----~~P~-~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 14 RTDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSID----QDPG-PMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEE----eCCC-CEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 44789999999999976 56788999999999977776665543 2333 489999999999887643 33222
Q ss_pred --C-CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-----ChHHHH
Q 000379 118 --D-FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-----HPYTKI 189 (1604)
Q Consensus 118 --~-~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-----~~~~~i 189 (1604)
+ ++ ..+......+. ......+.+.+..+.+.....- +.+....+.+|++||++....+ +|....
T Consensus 89 ~sp~l~-~~~~~~~~~~~-~~t~~~k~f~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la 160 (557)
T PF05876_consen 89 ASPVLR-RKLSPSKSRDS-GNTILYKRFPGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELA 160 (557)
T ss_pred hCHHHH-HHhCchhhccc-CCchhheecCCCEEEEEeCCCC------cccccCCcCEEEEechhhccccCccCCCHHHHH
Confidence 1 11 11211111111 1112233444555555543321 2334456789999999999532 455554
Q ss_pred HHHHHhhcCCCCcEEEEeccCCCC
Q 000379 190 MKEFYHKSDNKPKVFGMTASPVVR 213 (1604)
Q Consensus 190 m~~~~~~~~~~p~iLgLTATP~~~ 213 (1604)
.+....- ... +.+.+..||...
T Consensus 161 ~~R~~tf-~~~-~K~~~~STPt~~ 182 (557)
T PF05876_consen 161 EKRTKTF-GSN-RKILRISTPTIE 182 (557)
T ss_pred HHHHhhh-ccC-cEEEEeCCCCCC
Confidence 4432111 123 345566688764
No 374
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=86.54 E-value=1.8 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=20.4
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~ 82 (1604)
+.|+|..+|+|+|||.+|..+-.+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHH
Confidence 489999999999999988875444
No 375
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.46 E-value=4 Score=51.63 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|..+++.+.
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 58999999999999998888765
No 376
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=86.45 E-value=2.6 Score=52.92 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.5
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
+++++++|+|+|||.++-.++.++
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHHhh
Confidence 679999999999999887776655
No 377
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=86.10 E-value=2.3 Score=52.07 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=28.1
Q ss_pred CCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHH
Q 000379 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
-+..-...++..+. ++|+|+++++|+|||.+|-.+...+
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 34444445555554 5999999999999999987765544
No 378
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=86.05 E-value=5.9 Score=47.33 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=25.2
Q ss_pred CCCCcHHHHHHHHHhhc----cCEEE-EeCCCChHHHHHHHHHHH
Q 000379 43 NFIPRIYQLKVFEVAKR----RNTIA-VLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~----~n~Iv-~~~TGsGKTliailli~~ 82 (1604)
.+...+...+.+..+.+ .+.++ ++|+|+|||..+-.+..+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 33444455555554432 34555 899999999987766544
No 379
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=85.99 E-value=1.5 Score=47.69 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=34.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
++|.+++|+|||..+..++.+.+. .+..++|+... +-..|..+.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~------~g~~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA------RGEPGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH------CCCcEEEEECC-CCHHHHHHHHHH
Confidence 689999999999999988877664 34447777654 445666655554
No 380
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.85 E-value=3.6 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|..+++.+.
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999999888764
No 381
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=85.81 E-value=4.4 Score=50.60 Aligned_cols=57 Identities=19% Similarity=0.146 Sum_probs=32.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCcE
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEV 121 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v 121 (1604)
+.+++|||+|||.++..+...+.. ..+.++..++-+.+ +.=+.+|...+.+..++.+
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~---~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVM---RHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHH---hcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 458899999999988887765532 12223434444443 2234445555555555443
No 382
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=85.77 E-value=0.47 Score=51.21 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=29.7
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcC--ccceeEEEEeCcccccC
Q 000379 140 KEINKNDVLVMTPQILLDALRKAFLS--LDIVCFIVIDECHHATG 182 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q~Ll~~l~~~~~~--l~~i~llI~DEaH~~~~ 182 (1604)
.....++|||+++.-|++......+. ...-.+|||||||++-+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 34467899999999998765443322 22347999999999853
No 383
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=85.67 E-value=3.3 Score=52.86 Aligned_cols=38 Identities=29% Similarity=0.202 Sum_probs=26.8
Q ss_pred cHHHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 47 RIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 47 r~yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
++.-.+.+..+.. +-.|+++|.|+|||..|..+++.+.
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444444444432 3478999999999999999887764
No 384
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=85.51 E-value=4.9 Score=56.81 Aligned_cols=61 Identities=18% Similarity=0.096 Sum_probs=41.7
Q ss_pred CCCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhH
Q 000379 44 FIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv 106 (1604)
..+.+-|.+++..++. +-++|.+..|+|||.+.-.++..+ .... ...+..++.++||---+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~-~~l~-e~~g~~V~glAPTgkAa 897 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAV-NMLP-ESERPRVVGLGPTHRAV 897 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHH-HHHh-hccCceEEEEechHHHH
Confidence 4689999999999874 557899999999998754333221 1111 12345688899994443
No 385
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=85.47 E-value=4.1 Score=48.28 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=32.6
Q ss_pred CCcHHHHHHHHHhhc--------cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 45 IPRIYQLKVFEVAKR--------RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~--------~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.++|||..+++.+.. +-.++.+|.|+||+..|..+++.++
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll 51 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL 51 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh
Confidence 467899998887752 2378999999999999998888775
No 386
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=85.46 E-value=0.75 Score=52.18 Aligned_cols=41 Identities=15% Similarity=0.370 Sum_probs=28.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv 106 (1604)
.+|++|||+||+.. ++.++....-......|+|++|++..+
T Consensus 90 ~~VYGPTG~GKSqL----lRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL----LRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHHH----HHHhhhcCcccCCCCceEEECCCCCCC
Confidence 46899999999973 444443222234556799999988764
No 387
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=85.27 E-value=8.2 Score=48.06 Aligned_cols=176 Identities=13% Similarity=0.041 Sum_probs=98.6
Q ss_pred CCCCCCCcHHHHHHHHHhhc-----------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHH
Q 000379 40 NSINFIPRIYQLKVFEVAKR-----------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l~-----------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q 108 (1604)
....+.+-|||.-++-.+.+ .-.+|.+|-|-|||..+..++...+-- ....+..+.+++|+..-+.+
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~--~~~~~~~~~i~A~s~~qa~~ 133 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLL--NWRSGAGIYILAPSVEQAAN 133 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHh--hhhcCCcEEEEeccHHHHHH
Confidence 55678889999999998874 336899999999998666443332211 12345569999999887777
Q ss_pred HHHHHHhhcCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHH---HHHHHHHh--cCcCccceeEEEEeCcccccCC
Q 000379 109 QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ---ILLDALRK--AFLSLDIVCFIVIDECHHATGN 183 (1604)
Q Consensus 109 ~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q---~Ll~~l~~--~~~~l~~i~llI~DEaH~~~~~ 183 (1604)
-++.++...-..- +.. -....+.+.+. ++.. ..+..+.+ +...-.+..+.||||.|...+.
T Consensus 134 ~F~~ar~mv~~~~-----~l~--------~~~~~q~~s~~-i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~ 199 (546)
T COG4626 134 SFNPARDMVKRDD-----DLR--------DLCNVQTHSRT-ITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ 199 (546)
T ss_pred hhHHHHHHHHhCc-----chh--------hhhccccceeE-EEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH
Confidence 7777775431000 000 00000111111 1111 11111222 2334456679999999998764
Q ss_pred -ChHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCcee
Q 000379 184 -HPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF 238 (1604)
Q Consensus 184 -~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~ 238 (1604)
.-|+.+.... -..+.+.+++.|-++.... .-+.+........++..+.
T Consensus 200 ~~~~~~~~~g~--~ar~~~l~~~ITT~g~~~~-----g~~~q~~~y~k~vl~g~~~ 248 (546)
T COG4626 200 EDMYSEAKGGL--GARPEGLVVYITTSGDPPA-----GVFKQKLQYAKDVLDGKIK 248 (546)
T ss_pred HHHHHHHHhhh--ccCcCceEEEEecCCCCCc-----cHHHHHHHHHHHHhcCCcC
Confidence 1222221111 1235678888886544332 3456667777777765433
No 388
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.14 E-value=2.6 Score=54.48 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=20.6
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
..|+++|.|+|||.+|..+++.+.
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhc
Confidence 358999999999999998887764
No 389
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=84.91 E-value=4.4 Score=43.57 Aligned_cols=90 Identities=12% Similarity=0.124 Sum_probs=51.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHHh
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKE 141 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~~ 141 (1604)
.++++|+.||||..-+..++.... .+.++++..|..-- ..+.. .+..-.+..
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~------~g~~v~vfkp~iD~----------R~~~~--~V~Sr~G~~---------- 58 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE------AGMKVLVFKPAIDT----------RYGVG--KVSSRIGLS---------- 58 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH------cCCeEEEEeccccc----------ccccc--eeeeccCCc----------
Confidence 468999999999965555555433 55668888886221 11111 111111111
Q ss_pred cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccC
Q 000379 142 INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1604)
Q Consensus 142 ~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~ 182 (1604)
..-++|-....+.+.+....-... ++.|.+||||-...
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~~ 96 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFDE 96 (201)
T ss_pred --ccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCCH
Confidence 223555566666666654322222 78999999998754
No 390
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=84.85 E-value=11 Score=44.78 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=60.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEE-ecC-hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFL-APT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~L-vPt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
+.+++|+|+|||..+..++..+.. ..++ |+++ +++ +.-+.+|........++.+... ....+.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~-----~g~~-V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~--~~~~dp------- 181 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKA-----QGKK-VLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ--KEGADP------- 181 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh-----cCCe-EEEEecCccchhhHHHHHHHHHHcCceEEEe--CCCCCH-------
Confidence 458899999999988887766543 2333 4444 444 3333333333333334333221 111110
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc----C--CCCcEEEEeccC
Q 000379 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS----D--NKPKVFGMTASP 210 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~----~--~~p~iLgLTATP 210 (1604)
.....+.+... ...++++||+|=+-+...+...-..++.+.... + +...+|-|+||-
T Consensus 182 ------------a~~v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~ 244 (318)
T PRK10416 182 ------------ASVAFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT 244 (318)
T ss_pred ------------HHHHHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC
Confidence 01111222211 124578999999877754434333444443211 2 223568899983
No 391
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=84.44 E-value=2.7 Score=53.16 Aligned_cols=88 Identities=15% Similarity=0.005 Sum_probs=64.2
Q ss_pred CCCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC
Q 000379 41 SINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~ 119 (1604)
+....+-.-|..+++..+. +=.|+.+|.|+|||++.+.++..++.........-.++++|=|..-++|.-..+.. .+-
T Consensus 374 ~g~~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~-~qr 452 (1025)
T KOG1807|consen 374 PGLVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY-HQR 452 (1025)
T ss_pred CCceeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh-cCC
Confidence 3445566789999998886 55699999999999999999988886332222334589999999999998877764 233
Q ss_pred cEEEEECCCC
Q 000379 120 EVEEYYGAKG 129 (1604)
Q Consensus 120 ~v~~~~G~~~ 129 (1604)
...+..|+..
T Consensus 453 psImr~gsr~ 462 (1025)
T KOG1807|consen 453 PSIMRQGSRF 462 (1025)
T ss_pred ceEEEecccc
Confidence 4444555543
No 392
>CHL00095 clpC Clp protease ATP binding subunit
Probab=84.33 E-value=4.7 Score=54.68 Aligned_cols=40 Identities=33% Similarity=0.326 Sum_probs=30.2
Q ss_pred CCcHHHHHHHHHhh----ccCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 45 IPRIYQLKVFEVAK----RRNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l----~~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
--|.-+.+-+-.++ +.|.|+++|+|+|||.++-.++..+.
T Consensus 182 igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 182 IGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 33666666555554 37899999999999999988777654
No 393
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.04 E-value=3.2 Score=51.24 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|..+++.+.
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 78999999999999999887764
No 394
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=84.02 E-value=2.1 Score=49.23 Aligned_cols=111 Identities=19% Similarity=0.236 Sum_probs=58.1
Q ss_pred HHHHhhc-----cCEE-EEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEEC
Q 000379 53 VFEVAKR-----RNTI-AVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYG 126 (1604)
Q Consensus 53 ~l~~~l~-----~n~I-v~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G 126 (1604)
.++.+++ +.+. ++++.|+|||..++.++....-.....+...+++|+.-....-.+-..++.+.+++
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~------- 98 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGL------- 98 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-------
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcccc-------
Confidence 4566664 2333 99999999999988765543211112344567888876555443333333322211
Q ss_pred CCCCCccchhHHHHhcCCCcE-EEEcHHHHHHHHHhc--CcCccceeEEEEeCcccc
Q 000379 127 AKGVDEWDSQCWQKEINKNDV-LVMTPQILLDALRKA--FLSLDIVCFIVIDECHHA 180 (1604)
Q Consensus 127 ~~~~~~~~~~~w~~~~~~~~V-iV~T~q~Ll~~l~~~--~~~l~~i~llI~DEaH~~ 180 (1604)
+ .+..+++..+ -+.+.+.+...+.+- .+.-.+++|||+|-.=..
T Consensus 99 ----~------~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 99 ----D------PEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp -----------HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred ----c------cchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 1 0122222222 233455555555431 222357999999987443
No 395
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=83.75 E-value=2.9 Score=59.14 Aligned_cols=138 Identities=12% Similarity=0.074 Sum_probs=86.8
Q ss_pred CcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEE
Q 000379 46 PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125 (1604)
Q Consensus 46 pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 125 (1604)
.++-|.+++. ..++|++|.+.-|||||.+.+-.+..++. .......+++|+=|+.-+....+.|+..+.-....
T Consensus 2 ~t~~Q~~ai~-~~~~~~lv~A~AGsGKT~~lv~r~~~~~~---~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~-- 75 (1232)
T TIGR02785 2 WTDEQWQAIY-TRGQNILVSASAGSGKTAVLVERIIKKIL---RGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ-- 75 (1232)
T ss_pred CCHHHHHHHh-CCCCCEEEEecCCCcHHHHHHHHHHHHHh---cCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc--
Confidence 4678999997 45789999999999999999887766554 11223459999999999988888888765321110
Q ss_pred CCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccce--eEEEEeCcccc-cCCChHHHHHHHHHh
Q 000379 126 GAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIV--CFIVIDECHHA-TGNHPYTKIMKEFYH 195 (1604)
Q Consensus 126 G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i--~llI~DEaH~~-~~~~~~~~im~~~~~ 195 (1604)
.. ....|...+ .-...-|+|...|...+-+.+...-++ ++=|.||.... .....+..++.++|.
T Consensus 76 ---~p---~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~e~~~~~~e~~y~ 143 (1232)
T TIGR02785 76 ---EP---NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKEVVDDVFEEEYY 143 (1232)
T ss_pred ---Cc---hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHHHHHHHHHHHHHh
Confidence 01 112233332 235667899988865554433222222 45668887652 122355556665553
No 396
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.73 E-value=2.9 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|-.+++.+.
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999988887763
No 397
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=83.70 E-value=4.3 Score=48.58 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=30.8
Q ss_pred cHHHHHHHHHhhc------cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 47 RIYQLKVFEVAKR------RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 47 r~yQ~e~l~~~l~------~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+|||....+.+.. +-.++.+|.|.|||..|..+++.++
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 6888888877753 4578999999999999988887765
No 398
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=83.69 E-value=3.8 Score=54.35 Aligned_cols=96 Identities=24% Similarity=0.253 Sum_probs=71.7
Q ss_pred CCHHHHHHHH-HHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC
Q 000379 395 ISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473 (1604)
Q Consensus 395 ~s~K~~~L~~-lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g 473 (1604)
-+.|-....- ++... ..+.+++|-++++.-|...++.+++.-...++++..++|. ++.++|.++++...+|
T Consensus 292 GSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~------~~~~~r~~~~~~l~~g 363 (681)
T PRK10917 292 GSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGS------LKGKERREILEAIASG 363 (681)
T ss_pred CCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCC------CCHHHHHHHHHHHhCC
Confidence 3566654332 23332 2346899999999999888877776422235889999998 7899999999999999
Q ss_pred CceEEEEcc-ccccccCCCCccEEEE
Q 000379 474 KVNLLFATD-VIEEGMHVPNCSYVIR 498 (1604)
Q Consensus 474 ~~~iLIaT~-vleeGIDip~~nlVI~ 498 (1604)
+.+|+|+|. .+...+.+..+.+||.
T Consensus 364 ~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 364 EADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCCEEEchHHHhcccchhcccceEEE
Confidence 999999996 4556677888888774
No 399
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=83.65 E-value=5.5 Score=43.52 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.0
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
+..++++|.|+|||..+..++..+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45789999999999999888877653
No 400
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.57 E-value=3.7 Score=53.31 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.7
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
...|+++|.|+|||.+|..+++.+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhc
Confidence 4568999999999999999888764
No 401
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=83.36 E-value=7.4 Score=55.91 Aligned_cols=62 Identities=18% Similarity=0.060 Sum_probs=42.2
Q ss_pred CCCCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhH
Q 000379 43 NFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv 106 (1604)
...+.+-|.+++..++. +-++|.+..|+|||.+.-.++.. ++... ...+..++.++||---+
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~-~~~l~-~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 965 MEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSA-VNTLP-ESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH-HHHhh-cccCceEEEECCcHHHH
Confidence 35689999999999885 45689999999999875443332 22111 12334588899994443
No 402
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=83.30 E-value=0.3 Score=56.79 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=35.7
Q ss_pred CCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 44 FIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.-|.+.|.|+++.+++ .+++.+++||||||-++.++|.++.
T Consensus 23 ~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv 64 (725)
T KOG0349|consen 23 TLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIV 64 (725)
T ss_pred ccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHH
Confidence 3578999999999996 8999999999999999888776654
No 403
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=83.29 E-value=9.2 Score=46.89 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=20.5
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
..|+.+|.|+|||..|..++..++
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 378999999999999988877654
No 404
>PRK13342 recombination factor protein RarA; Reviewed
Probab=83.22 E-value=4.2 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.2
Q ss_pred cCEEEEeCCCChHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~ 82 (1604)
.++|+++|+|+|||.+|-.+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999988776543
No 405
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.22 E-value=3.2 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|++++.|+|||.+|..+++.+.
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 48999999999999999888764
No 406
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=83.15 E-value=4.2 Score=52.32 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 48 IYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 48 ~yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
++-.+.+..+.. +-.|+++|.|+|||.+|-.+++.+.
T Consensus 22 ~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 22 EHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444544442 3368899999999999988877654
No 407
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=83.15 E-value=4.4 Score=54.23 Aligned_cols=40 Identities=35% Similarity=0.281 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHhh----ccCEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 46 PRIYQLKVFEVAK----RRNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 46 pr~yQ~e~l~~~l----~~n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
-|+.+.+-+-.++ +.|+|+++|+|+|||.++-.++..+..
T Consensus 186 gr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 186 GREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3555544333333 378999999999999998888777654
No 408
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=83.10 E-value=7.4 Score=46.10 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=33.3
Q ss_pred CCCcHHHHHHHHHhhc--------cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 44 FIPRIYQLKVFEVAKR--------RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~--------~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+.+.|||....+.+.+ +-.++.+|.|.||+..|..+++.++
T Consensus 2 ~~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll 50 (319)
T PRK06090 2 NNDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL 50 (319)
T ss_pred CcCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc
Confidence 4678899988887752 3478999999999999988887765
No 409
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=82.92 E-value=2.3 Score=47.91 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=29.3
Q ss_pred cHHHHHHHHHhcCcCccceeEEEEeCccccc-CC---ChHHHHHHHHHhhcC-CCCcEEEEecc
Q 000379 151 TPQILLDALRKAFLSLDIVCFIVIDECHHAT-GN---HPYTKIMKEFYHKSD-NKPKVFGMTAS 209 (1604)
Q Consensus 151 T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~-~~---~~~~~im~~~~~~~~-~~p~iLgLTAT 209 (1604)
+...+++.+.+..-. -+|||||+|.+. +. ..+...+..+..... .....+.+++|
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S 164 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGS 164 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEES
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECC
Confidence 444555555543211 689999999998 32 344445555554422 23334556666
No 410
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=82.83 E-value=3.2 Score=54.06 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|-.+++.+.
T Consensus 43 YLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 68999999999999988877654
No 411
>PHA00729 NTP-binding motif containing protein
Probab=82.81 E-value=4.7 Score=44.95 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=34.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHh-------hCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIK-------SNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~-------~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
.|+++.+++|+|||..|..++..+..... .......++|+ +...|.......+..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fi-d~~~Ll~~L~~a~~~ 79 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFF-ELPDALEKIQDAIDN 79 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEE-EHHHHHHHHHHHHhc
Confidence 68999999999999999998877542110 11223334444 444676666555443
No 412
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=82.61 E-value=6.8 Score=44.22 Aligned_cols=127 Identities=11% Similarity=0.117 Sum_probs=65.9
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCC-CeEEEEEecChhhHHHHHHHHHhhcCC---------cEEEEECCCC
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGF-KKLIIFLAPTVHLVHQQYDVIRVHTDF---------EVEEYYGAKG 129 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~-~~~vl~LvPt~~Lv~Q~~~~i~~~~~~---------~v~~~~G~~~ 129 (1604)
..++|.+++|+|||..+.-++.+.+. . +.+++|++-. +-..+..+.++++ +. ....+.....
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~------~~ge~vlyvs~e-e~~~~l~~~~~s~-g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLK------NFGEKVLYVSFE-EPPEELIENMKSF-GWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH------HHT--EEEEESS-S-HHHHHHHHHTT-TS-HHHHHHTTSEEEEESSGG
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhh------hcCCcEEEEEec-CCHHHHHHHHHHc-CCcHHHHhhcCCEEEEecccc
Confidence 44789999999999999888877665 2 3447777753 4445566666532 22 1222221111
Q ss_pred CCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc---CCChHHHHHHHHHhhcCCCCcEEEE
Q 000379 130 VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT---GNHPYTKIMKEFYHKSDNKPKVFGM 206 (1604)
Q Consensus 130 ~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~---~~~~~~~im~~~~~~~~~~p~iLgL 206 (1604)
...|. -...+.+...+.... .-...+.+|+|-...+. ....+...+..++......--...+
T Consensus 92 ~~~~~--------------~~~~~~l~~~i~~~i-~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~ll 156 (226)
T PF06745_consen 92 RIGWS--------------PNDLEELLSKIREAI-EELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLL 156 (226)
T ss_dssp GST-T--------------SCCHHHHHHHHHHHH-HHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEE
T ss_pred ccccc--------------ccCHHHHHHHHHHHH-HhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 11000 123444444433211 11123799999887772 2223455555555444334445556
Q ss_pred ecc
Q 000379 207 TAS 209 (1604)
Q Consensus 207 TAT 209 (1604)
|+.
T Consensus 157 t~~ 159 (226)
T PF06745_consen 157 TSE 159 (226)
T ss_dssp EEE
T ss_pred EEc
Confidence 655
No 413
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=82.49 E-value=2.3 Score=50.85 Aligned_cols=42 Identities=21% Similarity=0.142 Sum_probs=27.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecCh
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~ 103 (1604)
+.|+++.|+|||..+..++..........+...+++|+.---
T Consensus 129 tEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 129 TEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred EEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 459999999999988776554322111123345688888744
No 414
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=82.39 E-value=16 Score=41.17 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=30.0
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
..+++.+++|+|||..+..++.+.+. .+..++++.-- .-..+..+.
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~~------~g~~~~~is~e-~~~~~i~~~ 66 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGLR------DGDPVIYVTTE-ESRESIIRQ 66 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHh------cCCeEEEEEcc-CCHHHHHHH
Confidence 55789999999999988877766544 23346666642 333444433
No 415
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=82.34 E-value=6.6 Score=57.89 Aligned_cols=58 Identities=19% Similarity=0.012 Sum_probs=40.8
Q ss_pred CCCCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHH---HHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 43 NFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVML---IKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliaill---i~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
...+.+-|.+++..++. +-++|.+..|+|||.+...+ +.+.++ ..+..++.++||-.-
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~-----~~g~~v~glApT~~A 1080 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE-----SEQLQVIGLAPTHEA 1080 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH-----hcCCeEEEEeChHHH
Confidence 35789999999999874 34578899999999876332 333332 134568889999443
No 416
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=82.22 E-value=2.4 Score=56.90 Aligned_cols=88 Identities=13% Similarity=0.024 Sum_probs=65.6
Q ss_pred CCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEE
Q 000379 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEY 124 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~ 124 (1604)
.+.+-|.+++.. ..++++|.|..|||||.+.+..|.+++... .-...++|+++=|+.-+....+.+.+.++-
T Consensus 4 ~Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~~l~~ria~Li~~~--~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~----- 75 (726)
T TIGR01073 4 HLNPEQREAVKT-TEGPLLIMAGAGSGKTRVLTHRIAHLIAEK--NVAPWNILAITFTNKAAREMKERVEKLLGP----- 75 (726)
T ss_pred ccCHHHHHHHhC-CCCCEEEEeCCCCCHHHHHHHHHHHHHHcC--CCCHHHeeeeeccHHHHHHHHHHHHHHhcc-----
Confidence 478899999875 368899999999999999999988887521 112345999999988888888877765421
Q ss_pred ECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHH
Q 000379 125 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158 (1604)
Q Consensus 125 ~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~ 158 (1604)
. ..++.|+|...|...
T Consensus 76 ------~------------~~~~~i~TFHs~~~~ 91 (726)
T TIGR01073 76 ------V------------AEDIWISTFHSMCVR 91 (726)
T ss_pred ------c------------cCCcEEEcHHHHHHH
Confidence 0 235778998877443
No 417
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.10 E-value=6.9 Score=44.30 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=63.7
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
+.+++++|.|+||++.|-.++-+. . ..+|-+-+..||..|..+-.+.. .
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEA---------n-STFFSvSSSDLvSKWmGESEkLV---------------------k 215 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEA---------N-STFFSVSSSDLVSKWMGESEKLV---------------------K 215 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhc---------C-CceEEeehHHHHHHHhccHHHHH---------------------H
Confidence 568999999999999876654431 2 47999999899988876533210 0
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC------ChHHHHHHHHHhhcC----CCCcEEEEecc
Q 000379 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN------HPYTKIMKEFYHKSD----NKPKVFGMTAS 209 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~------~~~~~im~~~~~~~~----~~p~iLgLTAT 209 (1604)
.|..+-+ -..-++|.+||++.+.+. ..-++|-.+|+-+.. ..--+|-|-||
T Consensus 216 --------------nLFemAR-----e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 216 --------------NLFEMAR-----ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred --------------HHHHHHH-----hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 0111111 134578999999988743 345777778876542 23445555555
No 418
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=82.06 E-value=8.7 Score=45.65 Aligned_cols=39 Identities=8% Similarity=0.108 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHhhc--------cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 46 PRIYQLKVFEVAKR--------RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 46 pr~yQ~e~l~~~l~--------~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
..|||...++.+.+ +-.++.+|.|.||+..|..+++.++
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 46788877776642 3467999999999999999887765
No 419
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=82.00 E-value=3.9 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=19.2
Q ss_pred cCEEEEeCCCChHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~ 82 (1604)
+++++++|+|+|||++|-.+..+
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHH
Confidence 56899999999999988776544
No 420
>PRK05580 primosome assembly protein PriA; Validated
Probab=81.96 E-value=10 Score=50.26 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
+.|-...+..+.... ..+.++||.++++.-+..+.+.|++. -+..+..+||. ++..+|.+...+.++|+.
T Consensus 173 SGKT~v~l~~i~~~l-~~g~~vLvLvPt~~L~~Q~~~~l~~~---fg~~v~~~~s~------~s~~~r~~~~~~~~~g~~ 242 (679)
T PRK05580 173 SGKTEVYLQAIAEVL-AQGKQALVLVPEIALTPQMLARFRAR---FGAPVAVLHSG------LSDGERLDEWRKAKRGEA 242 (679)
T ss_pred ChHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHH---hCCCEEEEECC------CCHHHHHHHHHHHHcCCC
Confidence 567766655544332 12458999999999999888888763 14578889998 789999999999999999
Q ss_pred eEEEEccccccccCCCCccEEEEcC
Q 000379 476 NLLFATDVIEEGMHVPNCSYVIRFD 500 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~~nlVI~fD 500 (1604)
+|+|+|..+-- +.+.+..+||.-+
T Consensus 243 ~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 243 KVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CEEEeccHHhc-ccccCCCEEEEEC
Confidence 99999974432 4566778877544
No 421
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=81.93 E-value=6.4 Score=47.82 Aligned_cols=57 Identities=9% Similarity=0.090 Sum_probs=37.1
Q ss_pred HHHHHHhhc------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 51 LKVFEVAKR------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 51 ~e~l~~~l~------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
..-|+.+++ .=+++.+++|+|||..++.++..+.. .+.+++|+.-. +-..|.....+
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~------~g~~VlYvs~E-Es~~qi~~Ra~ 130 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK------RGGKVLYVSGE-ESPEQIKLRAD 130 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh------cCCeEEEEECC-cCHHHHHHHHH
Confidence 345666664 23578999999999998887766654 23458887754 33455544433
No 422
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=81.86 E-value=7.6 Score=47.13 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.0
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
-.|+.+|.|+||+..|..+++.++-
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4789999999999999999888763
No 423
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=81.75 E-value=4.3 Score=50.68 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=57.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH-hhcCCcEEEE-ECCCCCCccch-hHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR-VHTDFEVEEY-YGAKGVDEWDS-QCW 138 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~-~~~~~~v~~~-~G~~~~~~~~~-~~w 138 (1604)
++|.+++|+|||..++.++.+... ..+..|+|+.-- -=..|....+- ...++....+ .|....+.|.. ..+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~-----~~g~~v~~fSlE-m~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~ 270 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVAL-----REGKPVLFFSLE-MSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNA 270 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH-----hCCCcEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 578899999999999988877642 123447777632 22344444332 2344433222 23322223321 112
Q ss_pred HHhcCCCcEEEE-----cHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 139 QKEINKNDVLVM-----TPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 139 ~~~~~~~~ViV~-----T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
...+.+..+.|. |.+.+...+++-......+++||+|=.|.+.
T Consensus 271 ~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 271 VDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 222334445553 3344443333211111257788888777664
No 424
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=81.59 E-value=4.4 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.4
Q ss_pred cCEEEEeCCCChHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~ 82 (1604)
.++|+++|+|+|||..|-.+...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999988776543
No 425
>PRK08506 replicative DNA helicase; Provisional
Probab=81.44 E-value=3.5 Score=51.95 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=58.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh-hcCCcEEEE-ECCCCCCccchh-HH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV-HTDFEVEEY-YGAKGVDEWDSQ-CW 138 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~-~~~~~v~~~-~G~~~~~~~~~~-~w 138 (1604)
+||.+.||.|||..++-++.+... .+..|+|+..- -=..|....+-. ..++....+ .|....+.|..- ..
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~------~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a 267 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALN------QDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDA 267 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh------cCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 578899999999999888877643 23346666543 234555555433 344433222 243333344311 11
Q ss_pred HHhcCCCcEEEE-----cHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 139 QKEINKNDVLVM-----TPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 139 ~~~~~~~~ViV~-----T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
...+.+..+.|- |...+...+++-.-....+++||+|=.+.+.
T Consensus 268 ~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 268 CDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 122233444442 4444544433211112347788888776554
No 426
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=81.05 E-value=5.3 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=20.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|-.+++.+.
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhc
Confidence 78999999999999998887764
No 427
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=80.61 E-value=5.5 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+.+|+.+|.|+|||..|..+++.+.
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhC
Confidence 3489999999999999999888765
No 428
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=80.58 E-value=3.7 Score=54.47 Aligned_cols=27 Identities=44% Similarity=0.471 Sum_probs=22.2
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
+.|.|+++|+|+|||.++-.+......
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 378999999999999998877665543
No 429
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=80.50 E-value=2.7 Score=47.58 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=56.5
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHhhc--CCcEEEEECCC-CCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCcc
Q 000379 91 GFKKLIIFLAPTVHLVHQQYDVIRVHT--DFEVEEYYGAK-GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167 (1604)
Q Consensus 91 ~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--~~~v~~~~G~~-~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~ 167 (1604)
.+.+.++||+..--=+-...+.++.+- +..|..++.-. .++. +...-.-...+|.|+||+++..++..+.+.++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~e---qv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~ 200 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEE---QVKLLKKTRVHIAVGTPGRLSKLLENGALSLS 200 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHH---HHHHHHhCCceEEEeChHHHHHHHHcCCCCcc
Confidence 345678888887444555555555442 12333333221 1211 11111123689999999999999999999999
Q ss_pred ceeEEEEeCccccc
Q 000379 168 IVCFIVIDECHHAT 181 (1604)
Q Consensus 168 ~i~llI~DEaH~~~ 181 (1604)
++..||+|--|.=.
T Consensus 201 ~l~~ivlD~s~~D~ 214 (252)
T PF14617_consen 201 NLKRIVLDWSYLDQ 214 (252)
T ss_pred cCeEEEEcCCcccc
Confidence 99999999877543
No 430
>PHA00350 putative assembly protein
Probab=80.27 E-value=11 Score=45.79 Aligned_cols=24 Identities=25% Similarity=0.109 Sum_probs=18.2
Q ss_pred EEEEeCCCChHHHHHHH-HHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVM-LIKDIAQ 85 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliail-li~~~~~ 85 (1604)
.++.+..|||||+-++. .|...+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 46889999999999886 4554443
No 431
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=80.09 E-value=1.4 Score=54.79 Aligned_cols=182 Identities=15% Similarity=0.072 Sum_probs=94.4
Q ss_pred CchHHHHHHHHh-cCCcc-----eeeeeeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhc
Q 000379 1372 PPLRELIELCDS-LGYFV-----KENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRI 1443 (1604)
Q Consensus 1372 ~p~~~L~e~~~~-~~~~~-----~~~~~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~ 1443 (1604)
+|-..+..+-++ ++... |..+...|+. +.|+.+|.+++..+. ..|.|++.|+..||++.|+....
T Consensus 371 d~nak~mhl~grRhrLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~--a~gps~~~~~wh~~~k~lq~~~~----- 443 (816)
T KOG3792|consen 371 DPNAKEMHLKGRRHRLQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAE--AEGPSKKTAKWHAARKRLQNEGR----- 443 (816)
T ss_pred CcchHHhhhhcccccceeccccCCCceeccCCcccchhhhhhhhcCCccc--cCCcccccchHHHHHHHhhccCC-----
Confidence 444555555442 33221 2455666776 569999999997554 56999999999999988776532
Q ss_pred ccCCCCCCcCCCccccCCCCCCCCCcccccccCcccccc--CCCcccccccccC------CCccccccccccCCchhhHH
Q 000379 1444 SKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIP--AGDSCKKAYCMTV------GTPVVAPINMKKGGPRTSLF 1515 (1604)
Q Consensus 1444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~k~~L~ 1515 (1604)
..++.. .+.+...+ +-+.+.++....++. ....+..+..-.. .......++-..+++...|+
T Consensus 444 p~ga~~--r~~~~ge~--------~a~~p~~~~r~~as~ddr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~ 513 (816)
T KOG3792|consen 444 PTGAAQ--RFGRMGED--------PASMPEPKGRRPASVDDRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELA 513 (816)
T ss_pred Cccccc--cccccCCC--------cccCCCCCCcccCCCcchhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHh
Confidence 001110 01110000 000010000000000 0000000000000 00112223333566777777
Q ss_pred HHHHhCCCCCCceeEeecccccccccccC-CcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHHHH
Q 000379 1516 QLCKTMLWPMPTFETTESKSRTLLVFCEG-LEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHEL 1593 (1604)
Q Consensus 1516 e~~~~~~~~~P~y~~~~~~~~~~~~~~~G-p~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~l~~l 1593 (1604)
|- ++. -+||+..+ .| -+|. +.|+..|.+-.. ...|.+ .+||-|++.||.-++..+
T Consensus 514 Ek---~rg--~k~El~se---------t~~gs~~---~R~v~gV~rvG~-----~akG~~-~~gd~a~~~a~Lca~~pt 569 (816)
T KOG3792|consen 514 EK---RRG--DKYELPSE---------TGTGSHD---KRFVKGVMRVGI-----LAKGLL-LNGDRAVELALLCAEKPT 569 (816)
T ss_pred hh---ccc--cceecccc---------cCCCCCC---ceeeeeeeeeeh-----hhcccc-ccchHHHHHHHHhccCcc
Confidence 73 222 27998777 45 8898 899988887322 344544 779999999998887543
No 432
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=79.86 E-value=8.5 Score=44.79 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=18.3
Q ss_pred cCEEEEeCCCChHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIK 81 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~ 81 (1604)
..+|+++|.|+|||.+|-+++.
T Consensus 163 pSmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred CceEEecCCCCchHHHHHHHHh
Confidence 3479999999999998877654
No 433
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=79.76 E-value=5.3 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.5
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+..|+++|.|+|||.+|..+++.+.
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3468999999999999999888765
No 434
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.71 E-value=6.5 Score=51.14 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.++..+++.+.
T Consensus 41 ~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 41 YLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999999887764
No 435
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=79.46 E-value=5.3 Score=53.86 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=64.7
Q ss_pred CCeEEEEEecChhhHHHHHHHHHhhcC-CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCcccee
Q 000379 92 FKKLIIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170 (1604)
Q Consensus 92 ~~~~vl~LvPt~~Lv~Q~~~~i~~~~~-~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~ 170 (1604)
+++.|.||.|.++=..+.++.++...+ .++++.||.|....-..-.-+=.-+++||+|||. .+ ..-+++.+.+
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----II-EtGIDIPnAN 875 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----II-ETGIDIPNAN 875 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----ee-ecCcCCCCCc
Confidence 566799999999999999999999875 7999999999755422211111125799999994 22 3457889999
Q ss_pred EEEEeCccccc
Q 000379 171 FIVIDECHHAT 181 (1604)
Q Consensus 171 llI~DEaH~~~ 181 (1604)
.||++-||++.
T Consensus 876 TiIIe~AD~fG 886 (1139)
T COG1197 876 TIIIERADKFG 886 (1139)
T ss_pred eEEEecccccc
Confidence 99999999994
No 436
>PF05729 NACHT: NACHT domain
Probab=79.44 E-value=6.8 Score=41.35 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
++|.++.|+|||.++..++..+..
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHh
Confidence 578999999999988877777654
No 437
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=79.35 E-value=2.1e+02 Score=37.84 Aligned_cols=151 Identities=13% Similarity=0.138 Sum_probs=93.0
Q ss_pred CCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC-cEE
Q 000379 45 IPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF-EVE 122 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~-~v~ 122 (1604)
.+-+||++++...+. ..+++++..|.|=--+.+-.+..+ ..++..++ ++++.+.-++++. ..+.- .+.
T Consensus 13 ~lL~Ye~qv~~~ll~~d~~L~V~a~GLsl~~l~~~~l~~~------s~~~sL~L-vLN~~~~ee~~f~---s~lk~~~~t 82 (892)
T KOG0442|consen 13 ALLEYEQQVLLELLEADGNLLVLAPGLSLLRLVAELLILF------SPPGSLVL-VLNTQEAEEEYFS---SKLKEPLVT 82 (892)
T ss_pred ccchhHHHHHHhhhcccCceEEecCCcCHHHHHHHHHHHh------CCccceEE-EecCchhhHHHHH---HhcCcCCCc
Confidence 378999999999995 445888888988655444433222 22333333 3445555555332 22211 111
Q ss_pred EEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCc
Q 000379 123 EYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPK 202 (1604)
Q Consensus 123 ~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~ 202 (1604)
.......++. .+..--...|.++|.-+|+-.+..+.+..+.+.-++++-||.+.....-+-|++.|. ...+.--
T Consensus 83 ~~~s~ls~~~-----R~~~Yl~GGv~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~ets~eaFIlRl~R-~knk~gf 156 (892)
T KOG0442|consen 83 EDPSELSVNK-----RRSKYLEGGVFFISSRILVVDLLTGRIPTEKITGILVLNAHTISETSQEAFILRLYR-SKNKTGF 156 (892)
T ss_pred cChhhcchhh-----hHHhhhcCCeEEeeeceeeeehhcCccchhHcceEEEechhhhhhcchhHHHHHHHH-HhcCCcc
Confidence 1111222221 122223567889999999888888999999999999999999998777777887653 3333445
Q ss_pred EEEEeccCC
Q 000379 203 VFGMTASPV 211 (1604)
Q Consensus 203 iLgLTATP~ 211 (1604)
|=++|-.|.
T Consensus 157 IkAFsd~P~ 165 (892)
T KOG0442|consen 157 IKAFSDSPE 165 (892)
T ss_pred eeccccCch
Confidence 555665554
No 438
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.12 E-value=13 Score=47.48 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
+.|-...+.++.... ..+.++||.++++.-+..+++.|++.. +..+..+||. ++..+|.+...+.++|+.
T Consensus 8 sGKT~v~l~~i~~~l-~~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~------~~~~er~~~~~~~~~g~~ 77 (505)
T TIGR00595 8 SGKTEVYLQAIEKVL-ALGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSG------LSDSEKLQAWRKVKNGEI 77 (505)
T ss_pred CCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECC------CCHHHHHHHHHHHHcCCC
Confidence 556666555554332 234589999999999988888887631 3467788998 789999999999999999
Q ss_pred eEEEEccccccccCCCCccEEEEcC
Q 000379 476 NLLFATDVIEEGMHVPNCSYVIRFD 500 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~~nlVI~fD 500 (1604)
+|+|+|..+-- ..++++.+||.-+
T Consensus 78 ~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 78 LVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CEEECChHHHc-CcccCCCEEEEEC
Confidence 99999975432 4566778887533
No 439
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=78.81 E-value=7.2 Score=46.68 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.++++|.|+|||..|..+..++.
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999888876
No 440
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.52 E-value=5.8 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=20.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
..|+.+|.|+|||.+|..+.+.+.
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999887764
No 441
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=78.46 E-value=22 Score=41.67 Aligned_cols=93 Identities=22% Similarity=0.195 Sum_probs=58.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEe-c-ChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLA-P-TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~Lv-P-t~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
+++++-.|+|||....-++.++.+ .+++|++.+ . .|+=+..|.+.+-+..|..+..- ..+.|.
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~------~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~--~~G~Dp------- 206 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQ------QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG--KEGADP------- 206 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHH------CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc--CCCCCc-------
Confidence 457899999999988888777655 334444444 3 46666677777777777666442 222222
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC
Q 000379 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN 183 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~ 183 (1604)
..+..+.+.++. -..+++|++|=|=++..+
T Consensus 207 ------------AaVafDAi~~Ak--ar~~DvvliDTAGRLhnk 236 (340)
T COG0552 207 ------------AAVAFDAIQAAK--ARGIDVVLIDTAGRLHNK 236 (340)
T ss_pred ------------HHHHHHHHHHHH--HcCCCEEEEeCcccccCc
Confidence 123345555432 356789999998887654
No 442
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=78.29 E-value=6.2 Score=44.47 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=30.3
Q ss_pred HHHHHhhc------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec
Q 000379 52 KVFEVAKR------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1604)
Q Consensus 52 e~l~~~l~------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP 101 (1604)
+.++.+++ .-+.+++++|+|||..+..++.+.+. .+.+++|+.-
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~------~~~~v~yi~~ 59 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAK------NGKKVIYIDT 59 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEEC
Confidence 34566663 23579999999999999888877654 2344666543
No 443
>PRK10865 protein disaggregation chaperone; Provisional
Probab=78.03 E-value=4.4 Score=55.02 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=21.9
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|.|+++|+|+|||.++-.+...+.
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999988777654
No 444
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=77.96 E-value=2.1 Score=48.63 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=14.5
Q ss_pred EEEEeCCCChHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLI 80 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli 80 (1604)
++|.++.|+|||....-++
T Consensus 1 ~vv~G~pGsGKSt~i~~~~ 19 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLL 19 (234)
T ss_pred CEEEcCCCCCHHHHHHHHH
Confidence 4788999999998544443
No 445
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=77.88 E-value=3.1 Score=48.53 Aligned_cols=55 Identities=25% Similarity=0.244 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHhhccCE-EEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChh
Q 000379 46 PRIYQLKVFEVAKRRNT-IAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104 (1604)
Q Consensus 46 pr~yQ~e~l~~~l~~n~-Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~ 104 (1604)
-.+-|..-++.+.+.++ ...+|-|+|||+.|+......+. .+.-++++.-=|-|+
T Consensus 129 kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~----~~~v~rIiLtRPaVE 184 (348)
T COG1702 129 KTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALG----AGQVRRIILTRPAVE 184 (348)
T ss_pred cChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhh----hcccceeeecCcchh
Confidence 35678888888887775 46689999999998887666654 334445665556333
No 446
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=77.70 E-value=5.5 Score=54.26 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=27.1
Q ss_pred cHHHHHHHHHhh----ccCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 47 RIYQLKVFEVAK----RRNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 47 r~yQ~e~l~~~l----~~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
|+...+-+-.++ +.|.|+++|+|+|||.++-.++..+.
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 444444433332 37899999999999999988776654
No 447
>PRK05748 replicative DNA helicase; Provisional
Probab=77.52 E-value=7.5 Score=48.90 Aligned_cols=114 Identities=12% Similarity=0.130 Sum_probs=59.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH-hhcCCcEEEE-ECCCCCCccchh-HH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR-VHTDFEVEEY-YGAKGVDEWDSQ-CW 138 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~-~~~~~~v~~~-~G~~~~~~~~~~-~w 138 (1604)
++|.+.||.|||..++-++.+... ..+..++|+..- .-..|....+- ...++....+ .|......|..- ..
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~-----~~g~~v~~fSlE-ms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a 279 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVAT-----KTDKNVAIFSLE-MGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIA 279 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHH-----hCCCeEEEEeCC-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 578899999999999888877643 123446666543 33455555553 3334333212 233333333211 11
Q ss_pred HHhcCCCcEEEE-----cHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 139 QKEINKNDVLVM-----TPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 139 ~~~~~~~~ViV~-----T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
...+.+..+.|. |...+...+++-......+++||+|=.|.+.
T Consensus 280 ~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 280 MGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 122334445543 4444444333211111257899999887764
No 448
>PRK11823 DNA repair protein RadA; Provisional
Probab=77.44 E-value=11 Score=47.32 Aligned_cols=56 Identities=9% Similarity=0.072 Sum_probs=37.2
Q ss_pred HHHHHhhc------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 52 KVFEVAKR------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 52 e~l~~~l~------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
.-|+.+++ .-+++.+++|+|||..++.++..... .+.+++|+.-. +-..|.....+
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~------~g~~vlYvs~E-es~~qi~~ra~ 128 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA------AGGKVLYVSGE-ESASQIKLRAE 128 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEEcc-ccHHHHHHHHH
Confidence 35666664 33678999999999988888776543 23457887754 44456555443
No 449
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=77.42 E-value=6 Score=46.43 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=32.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
+.|++..|+|||..|..++..... ...-...+++-+....-..+....+...+
T Consensus 22 v~I~G~~G~GKT~LA~~~~~~~~~---~~~f~~v~wv~~~~~~~~~~~~~~i~~~l 74 (287)
T PF00931_consen 22 VAIVGMGGIGKTTLARQVARDLRI---KNRFDGVIWVSLSKNPSLEQLLEQILRQL 74 (287)
T ss_dssp EEEEESTTSSHHHHHHHHHCHHHH---CCCCTEEEEEEEES-SCCHHHHHHHHHHH
T ss_pred EEEEcCCcCCcceeeeeccccccc---ccccccccccccccccccccccccccccc
Confidence 568899999999999887755321 22234556666665444344444454443
No 450
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=77.22 E-value=9.9 Score=45.56 Aligned_cols=40 Identities=10% Similarity=-0.010 Sum_probs=32.0
Q ss_pred CCcHHHHHHHHHhhc--------cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 45 IPRIYQLKVFEVAKR--------RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~--------~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
..+|||...++.+.+ +-.++.+|.|.||+..|..+++.++
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~Ll 49 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLM 49 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHc
Confidence 457888888887742 3467999999999999998887765
No 451
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=77.21 E-value=3.7 Score=47.48 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=37.2
Q ss_pred CCCCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 43 NFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
.+-..+.|.+.+..+.. ..++++++||||||...-.++.++.. ...+++.+=..+++
T Consensus 61 ~lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~------~~~~iitiEdp~E~ 120 (264)
T cd01129 61 KLGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNT------PEKNIITVEDPVEY 120 (264)
T ss_pred HcCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCC------CCCeEEEECCCcee
Confidence 34456778888877753 45789999999999877665554321 33445555555443
No 452
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=76.96 E-value=7.6 Score=44.07 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=25.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt 102 (1604)
+.++++.|+|||..+..++..........+.+..++++.--
T Consensus 22 ~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e 62 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTE 62 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCC
Confidence 57999999999999988776533200001113457777643
No 453
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=76.89 E-value=3.3 Score=47.92 Aligned_cols=36 Identities=19% Similarity=0.065 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHH
Q 000379 46 PRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIK 81 (1604)
Q Consensus 46 pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~ 81 (1604)
..+...++++.++ +.++++.+|+|+|||.+|..+..
T Consensus 3 ~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 3 ETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHH
Confidence 4566666666654 47899999999999999877654
No 454
>PRK06904 replicative DNA helicase; Validated
Probab=76.75 E-value=15 Score=46.19 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=60.9
Q ss_pred cC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh-hcCCcEEEE-EC-CCCCCccch
Q 000379 60 RN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV-HTDFEVEEY-YG-AKGVDEWDS 135 (1604)
Q Consensus 60 ~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~-~~~~~v~~~-~G-~~~~~~~~~ 135 (1604)
++ +||.+.+|.|||..++-++.+... . .+..|+|...- -=..|+...+-. ..++....+ .| ....+.|..
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~----~-~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~ 294 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAM----A-SEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAK 294 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHH----h-cCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHH
Confidence 44 467899999999988777766543 1 23346666543 334555555433 344443333 33 233344432
Q ss_pred hH-HHHhc-CCCcEEE-----EcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 136 QC-WQKEI-NKNDVLV-----MTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 136 ~~-w~~~~-~~~~ViV-----~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
-. ....+ ...++.| .|...+....++-......+++||||=.|.+.
T Consensus 295 ~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 295 ISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 11 11122 2344555 35555544333211112357899999877764
No 455
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=76.67 E-value=2.5 Score=45.28 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=42.2
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---CCcEEEEECCCCCCccchhHHH
Q 000379 63 IAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 63 Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
++.++-|-|||-+.-+.+..+.. ....++++.+|+..=+....+.+...+ +++. . ..........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~-----~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~-----~--~~~~~~~~~~ 68 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ-----KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKE-----E--KKKRIGQIIK 68 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS----------EEEE-SS--S-HHHHHCC-----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-----hcCceEEEecCCHHHHHHHHHHHHhhcccccccc-----c--cccccccccc
Confidence 57899999999877776655443 122469999999776665555443322 1111 0 0000000001
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccc
Q 000379 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHA 180 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~ 180 (1604)
.......|-+..|+.+... -...++||+|||=.+
T Consensus 69 ~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaI 102 (177)
T PF05127_consen 69 LRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAI 102 (177)
T ss_dssp ----CCC--B--HHHHCCT-----------SCEEECTGGGS
T ss_pred cccccceEEEECCHHHHhC-------cCCCCEEEEechhcC
Confidence 1122566777777766322 123589999999776
No 456
>PHA00012 I assembly protein
Probab=76.59 E-value=9.2 Score=44.56 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=28.7
Q ss_pred cceeEEEEeCcccccCCChHH----H-HHHHHHhhcCCCCcEEEEeccCC
Q 000379 167 DIVCFIVIDECHHATGNHPYT----K-IMKEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 167 ~~i~llI~DEaH~~~~~~~~~----~-im~~~~~~~~~~p~iLgLTATP~ 211 (1604)
..-+++|+||||......++. . +...+.+.....--++.+|=.|.
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps 129 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDIS 129 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHH
Confidence 456799999999998543322 2 33334444455667788876653
No 457
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=76.48 E-value=4.2 Score=49.13 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=20.2
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
++.+.|++|+|+|||.++.++...+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhh
Confidence 5889999999999998776655544
No 458
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=76.35 E-value=7.3 Score=43.89 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=27.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChh
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~ 104 (1604)
+.|++++|+|||..+..++........-.+.+..++++..-..
T Consensus 22 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 22 TEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred EEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 5699999999999998877665431000112355777776543
No 459
>PRK05973 replicative DNA helicase; Provisional
Probab=76.34 E-value=3.7 Score=46.34 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=32.5
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
-++|.+++|+|||..++.++.+... .+.+++|+.-- +=..|..+.+..
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~------~Ge~vlyfSlE-es~~~i~~R~~s 113 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMK------SGRTGVFFTLE-YTEQDVRDRLRA 113 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh------cCCeEEEEEEe-CCHHHHHHHHHH
Confidence 3678999999999999988877654 23447777643 223555555553
No 460
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=76.20 E-value=4.4 Score=48.00 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=31.5
Q ss_pred HHHHhhc-----cC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChh
Q 000379 53 VFEVAKR-----RN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104 (1604)
Q Consensus 53 ~l~~~l~-----~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~ 104 (1604)
.++.+++ +. +.++++.|+|||..+..++..........+.+.+++|+.---.
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~ 141 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT 141 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence 4566664 22 4599999999999987766543211111223456888875543
No 461
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=76.19 E-value=4.6 Score=48.52 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=21.1
Q ss_pred hccCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 58 KRRNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 58 l~~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+++..+|++|.|+|||.++-.+.....
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHH
Confidence 468999999999999987666554443
No 462
>PF12846 AAA_10: AAA-like domain
Probab=76.11 E-value=3 Score=49.28 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=27.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt 102 (1604)
.+++|.++||+|||..+..++.+++. .+..++++=|.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~------~g~~~~i~D~~ 38 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIR------RGPRVVIFDPK 38 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHH------cCCCEEEEcCC
Confidence 57999999999999988877776665 23335555444
No 463
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=75.61 E-value=3.4 Score=49.45 Aligned_cols=49 Identities=27% Similarity=0.316 Sum_probs=32.3
Q ss_pred HHHHHHhh--ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhH
Q 000379 51 LKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106 (1604)
Q Consensus 51 ~e~l~~~l--~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv 106 (1604)
.+.+..+. +.|++|+++||||||...-.++..+ ++..+++.+=++.+|.
T Consensus 152 ~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i-------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 152 EAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAI-------PPQERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHHHcCCeEEEECCCCccHHHHHHHHHccc-------CCCCCEEEECCCcccc
Confidence 34444444 4899999999999998665544332 2334567777776663
No 464
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=75.45 E-value=3.3 Score=45.66 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=26.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
+++++|||||||...-.++.++.. ..+++++++-...++
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~-----~~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINK-----NKTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh-----cCCcEEEEEcCCccc
Confidence 679999999999987666555432 234457777666554
No 465
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=75.31 E-value=7.5 Score=46.44 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=26.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt 102 (1604)
+.|++++|+|||..++.++..........+.+..++|+.--
T Consensus 105 tei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te 145 (317)
T PRK04301 105 TEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTE 145 (317)
T ss_pred EEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCC
Confidence 56999999999999988876643211111223457777643
No 466
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=75.21 E-value=11 Score=45.82 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.3
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
..|+++|.|+|||..+-.+.+.+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999888877764
No 467
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=74.66 E-value=4.5 Score=41.95 Aligned_cols=106 Identities=20% Similarity=0.179 Sum_probs=53.9
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
.++.|.+++|+|||....-++-.+.+ .+-+..=|++|-+- +=-+..|+++..+..+...-......-.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~-----~g~kvgGf~t~EVR-------~gGkR~GF~Ivdl~tg~~~~la~~~~~~ 73 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLRE-----KGYKVGGFITPEVR-------EGGKRIGFKIVDLATGEEGILARVGFSR 73 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHh-----cCceeeeEEeeeee-------cCCeEeeeEEEEccCCceEEEEEcCCCC
Confidence 45789999999999977665544432 23455667777522 1112346666555422211000000001
Q ss_pred HhcCCCcEEEEcHH-HHHHHHHhcCcCccceeEEEEeCcccc
Q 000379 140 KEINKNDVLVMTPQ-ILLDALRKAFLSLDIVCFIVIDECHHA 180 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q-~Ll~~l~~~~~~l~~i~llI~DEaH~~ 180 (1604)
.....+-|-|---+ ++...+++.+ ..-+++|+||.--+
T Consensus 74 ~rvGkY~V~v~~le~i~~~al~rA~---~~aDvIIIDEIGpM 112 (179)
T COG1618 74 PRVGKYGVNVEGLEEIAIPALRRAL---EEADVIIIDEIGPM 112 (179)
T ss_pred cccceEEeeHHHHHHHhHHHHHHHh---hcCCEEEEecccch
Confidence 11123333333333 3344445443 23689999998655
No 468
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=74.65 E-value=4.3 Score=51.02 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=31.9
Q ss_pred CCCCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHH
Q 000379 40 NSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVML 79 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliaill 79 (1604)
.+..++|+++|.+.++.+- ++=.|.-.|||||||+.-+..
T Consensus 10 F~fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCa 54 (821)
T KOG1133|consen 10 FPFPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICA 54 (821)
T ss_pred cCCCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHH
Confidence 3467899999999998774 355688999999999965553
No 469
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=74.55 E-value=4.4 Score=51.26 Aligned_cols=61 Identities=20% Similarity=0.408 Sum_probs=51.7
Q ss_pred HHHHhCCCceEEEEccccccccCCCCccEE--------EEcCCCCCHHHHHHHhhhhcccCce----EEEEEe
Q 000379 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYV--------IRFDLPKTVSSYIQSRGRARQHNSQ----FILMLE 527 (1604)
Q Consensus 467 l~~Fr~g~~~iLIaT~vleeGIDip~~nlV--------I~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~ 527 (1604)
-++|-+|+..|-|-+.+++-||-++.-.-| |-..+|||...-||..||++|.++. |+.++.
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIs 922 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLIS 922 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEeh
Confidence 357999999999999999999999876655 4578999999999999999999863 666664
No 470
>PRK07004 replicative DNA helicase; Provisional
Probab=74.33 E-value=7.9 Score=48.64 Aligned_cols=114 Identities=12% Similarity=0.126 Sum_probs=58.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH-hhcCCcEEEE-ECCCCCCccch-hHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR-VHTDFEVEEY-YGAKGVDEWDS-QCW 138 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~-~~~~~~v~~~-~G~~~~~~~~~-~~w 138 (1604)
+||.+.+|+|||..++-++.+... . .+..++|...- -=..|....+- ...++....+ .|....+.|.. ..+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~----~-~~~~v~~fSlE-M~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a 289 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAV----E-YGLPVAVFSME-MPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHA 289 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHH----H-cCCeEEEEeCC-CCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 567899999999998888776543 1 23346666432 22345554443 2333332222 34444444432 112
Q ss_pred HHhcCCCcEEEE-----cHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 139 QKEINKNDVLVM-----TPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 139 ~~~~~~~~ViV~-----T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
...+.+..+.|. |+..+....++-......+++||+|=.|.+.
T Consensus 290 ~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 290 VQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 233445556553 4444433322211112346788888776664
No 471
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=74.22 E-value=4 Score=44.49 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=23.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
.++++|||+|||-.|+.+++.... -+|....+..
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~----------pvI~~Driq~ 37 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGA----------PVISLDRIQC 37 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH------------EEEEE-SGGG
T ss_pred EEEECCCCCChhHHHHHHHHHhCC----------CEEEecceec
Confidence 478999999999999998876522 4677776443
No 472
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.12 E-value=14 Score=46.70 Aligned_cols=23 Identities=39% Similarity=0.387 Sum_probs=19.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.++++|.|+|||.+|-.+++.+.
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999988877653
No 473
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=73.85 E-value=10 Score=47.47 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=56.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh-hcCCcEEEE-ECCCCCCccchhH-H
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV-HTDFEVEEY-YGAKGVDEWDSQC-W 138 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~-~~~~~v~~~-~G~~~~~~~~~~~-w 138 (1604)
++|.+++|+|||..++-++.+... ..+..++|+..- .=..|....+-. ..++....+ .|......|..-. .
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~-----~~g~~vl~~SlE-m~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a 271 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAI-----KEGKPVAFFSLE-MSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSA 271 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHH-----hCCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHH
Confidence 578899999999988888777653 123446777643 223444444332 334432222 2322222232100 0
Q ss_pred HHhcCCCcEEE-----EcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 139 QKEINKNDVLV-----MTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 139 ~~~~~~~~ViV-----~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
...+.+..+.| .|...+...+..-... ..+++||+|=.+.+.
T Consensus 272 ~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 272 AGKLSEAPLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 11223334444 2444454443321111 247889999776663
No 474
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=73.65 E-value=8.3 Score=46.75 Aligned_cols=95 Identities=16% Similarity=0.142 Sum_probs=55.3
Q ss_pred HHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhC-CCCeEEEEEecChhhHHHHHHHHHhhcCCcEE
Q 000379 49 YQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN-GFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVE 122 (1604)
Q Consensus 49 yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~-~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~ 122 (1604)
+=+++.+.++ +.++++.++||+||+++|-++- ... .+ ...+ +|-++=-++.+.-.. ...||..-+
T Consensus 86 ~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH--~~s---~r~~~~P--FI~~NCa~~~en~~~--~eLFG~~kG 156 (403)
T COG1221 86 SLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIH--ALS---ARRAEAP--FIAFNCAAYSENLQE--AELFGHEKG 156 (403)
T ss_pred HHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHH--Hhh---hcccCCC--EEEEEHHHhCcCHHH--HHHhccccc
Confidence 3344555554 4889999999999999987764 222 11 2232 333433233222111 127888888
Q ss_pred EEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 123 EYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 123 ~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
.++|..... .|.+..-+=..|.+||.|.+.
T Consensus 157 aftGa~~~k-----------------------------~Glfe~A~GGtLfLDEI~~LP 186 (403)
T COG1221 157 AFTGAQGGK-----------------------------AGLFEQANGGTLFLDEIHRLP 186 (403)
T ss_pred eeecccCCc-----------------------------CchheecCCCEEehhhhhhCC
Confidence 899843221 122222334589999999994
No 475
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=73.64 E-value=7.6 Score=50.86 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=55.2
Q ss_pred CCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
.+.-.+-|.+++..-.. +.+.+++|+|+|||-+++-++.-+.+ +.+..+++|++.++.-.+|-.+.+.+
T Consensus 736 ~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyh----n~p~qrTlivthsnqaln~lfeKi~~ 805 (1320)
T KOG1806|consen 736 QVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYH----NSPNQRTLIVTHSNQALNQLFEKIMA 805 (1320)
T ss_pred hhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhh----cCCCcceEEEEecccchhHHHHHHHh
Confidence 34446688888877765 77889999999999999988776655 55677899999998888888877764
No 476
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=73.20 E-value=6.4 Score=44.83 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=33.4
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
..++|.+++|+|||..+..++.+.+. .+.+++|+.-. +-..|..+.+.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~------~ge~~lyvs~e-e~~~~i~~~~~ 69 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQ------MGEPGIYVALE-EHPVQVRRNMA 69 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH------cCCcEEEEEee-CCHHHHHHHHH
Confidence 45789999999999999887776554 24457777743 44555555554
No 477
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=73.11 E-value=16 Score=45.26 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=69.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChh-hHHHHHHHHHhh---cCCcEEEEECCCCCCccchhH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH-LVHQQYDVIRVH---TDFEVEEYYGAKGVDEWDSQC 137 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~-Lv~Q~~~~i~~~---~~~~v~~~~G~~~~~~~~~~~ 137 (1604)
.++.+..|||||.++...+...+. ...++.+++++-++.. |..-....+... +++... +....+....
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~---~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~-~~~~~~~~~i---- 75 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLA---INKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYE-FKKSKSSMEI---- 75 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHH---hcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhh-eeecCCccEE----
Confidence 578899999999977764443332 1124567888888866 555455555532 233211 1111110000
Q ss_pred HHHhcC-CCcEEEEcH-HHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCCCC
Q 000379 138 WQKEIN-KNDVLVMTP-QILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR 213 (1604)
Q Consensus 138 w~~~~~-~~~ViV~T~-q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~~~ 213 (1604)
.... +..|++..- +.-. .+. ....+.++.+|||..+... .+..++..+ .. +.....+.+|.+|...
T Consensus 76 --~~~~~g~~i~f~g~~d~~~-~ik----~~~~~~~~~idEa~~~~~~-~~~~l~~rl-r~-~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 76 --KILNTGKKFIFKGLNDKPN-KLK----SGAGIAIIWFEEASQLTFE-DIKELIPRL-RE-TGGKKFIIFSSNPESP 143 (396)
T ss_pred --EecCCCeEEEeecccCChh-Hhh----CcceeeeehhhhhhhcCHH-HHHHHHHHh-hc-cCCccEEEEEcCcCCC
Confidence 0011 334555433 1111 111 2234689999999998543 566665542 11 1222257889999653
No 478
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=73.04 E-value=5.7 Score=47.49 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=30.0
Q ss_pred HHHHHhh--ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 52 KVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 52 e~l~~~l--~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
+.+..+. +.|++|+++||||||...-.++..+ +...+++.+=.+.+|
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i-------p~~~ri~tiEd~~El 199 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTFTNAALREI-------PAIERLITVEDAREI 199 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC-------CCCCeEEEecCCCcc
Confidence 3444443 4899999999999998654444332 234456666555555
No 479
>PRK08006 replicative DNA helicase; Provisional
Probab=72.82 E-value=13 Score=46.86 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=58.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh-hcCCcEEEE-ECCCCCCccchhH-H
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV-HTDFEVEEY-YGAKGVDEWDSQC-W 138 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~-~~~~~v~~~-~G~~~~~~~~~~~-w 138 (1604)
+||.+.+|.|||..|+-++.+... . .+..|+|...- -=..|....+-. ..++....+ .|..+.+.|..-. .
T Consensus 227 iiIaarPgmGKTafalnia~~~a~----~-~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a 300 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAM----L-QDKPVLIFSLE-MPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGT 300 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH----h-cCCeEEEEecc-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 567899999999999888777653 1 23446666543 223455544443 234433323 2433444443211 1
Q ss_pred HHhc-CCCcEEEE-----cHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 139 QKEI-NKNDVLVM-----TPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 139 ~~~~-~~~~ViV~-----T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
...+ ....+.|- |...+....++-......+++||+|=.|.+.
T Consensus 301 ~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 301 MGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 1122 34455543 4444443332211112257899999777653
No 480
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=72.28 E-value=2.9 Score=49.77 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=20.6
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~ 82 (1604)
+.|+|+.+|||+|||+.|--+++-
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ 249 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARV 249 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHH
Confidence 489999999999999998776653
No 481
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=72.02 E-value=13 Score=49.00 Aligned_cols=96 Identities=24% Similarity=0.270 Sum_probs=69.9
Q ss_pred CCHHHHHH-HHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC
Q 000379 395 ISTKLHEL-LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473 (1604)
Q Consensus 395 ~s~K~~~L-~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g 473 (1604)
-+.|-... +-++.... .+.+++|-++++.-|...++.+++.-...++++..++|+ ++.++|.+.++...+|
T Consensus 266 GSGKT~va~l~il~~~~--~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~------~~~~~r~~~~~~i~~g 337 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIE--AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGS------LKGKRRKELLETIASG 337 (630)
T ss_pred CCcHHHHHHHHHHHHHH--cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecC------CCHHHHHHHHHHHhCC
Confidence 35565432 22333322 345899999999999888877776422236889999998 7888899999999999
Q ss_pred CceEEEEcccc-ccccCCCCccEEEE
Q 000379 474 KVNLLFATDVI-EEGMHVPNCSYVIR 498 (1604)
Q Consensus 474 ~~~iLIaT~vl-eeGIDip~~nlVI~ 498 (1604)
+.+|+|+|..+ .+.+++.++.+||.
T Consensus 338 ~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 338 QIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCCEEEecHHHHhccccccccceEEE
Confidence 99999998644 45677777887773
No 482
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=71.39 E-value=8.4 Score=46.18 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=26.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChh
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~ 104 (1604)
+++++++|+|||..++.++..........+...+++|+.---.
T Consensus 126 ~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 126 TEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred EEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 5699999999999987766543221111223335788775543
No 483
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=71.22 E-value=38 Score=43.38 Aligned_cols=99 Identities=21% Similarity=0.276 Sum_probs=70.1
Q ss_pred EEEEEchHHHHHHHHHHHhhCCCCC-CeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEcc-----ccccc-cC
Q 000379 417 CIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATD-----VIEEG-MH 489 (1604)
Q Consensus 417 ~IIFv~~r~ta~~L~~~L~~~~~~~-~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~-----vleeG-ID 489 (1604)
+||.++||.-|..+++.+....... ++++..+.|. ++...|...++ .| .+|||||. .+++| +|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG------~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~ 171 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGG------VSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLD 171 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECC------CCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcc
Confidence 9999999999999999888765444 6778888987 56776664444 46 99999995 66666 89
Q ss_pred CCCccEEEE------cCCCCCHHHHHHHhhhhcccCceEEEEEe
Q 000379 490 VPNCSYVIR------FDLPKTVSSYIQSRGRARQHNSQFILMLE 527 (1604)
Q Consensus 490 ip~~nlVI~------fD~p~s~~syiQr~GRA~R~gs~~i~~v~ 527 (1604)
+..+..+|. +|+ ....-+..+.+.-....+..+|..
T Consensus 172 l~~v~~lVlDEADrmLd~--Gf~~~i~~I~~~~p~~~qtllfSA 213 (513)
T COG0513 172 LSGVETLVLDEADRMLDM--GFIDDIEKILKALPPDRQTLLFSA 213 (513)
T ss_pred hhhcCEEEeccHhhhhcC--CCHHHHHHHHHhCCcccEEEEEec
Confidence 989998874 334 444445555544444444555543
No 484
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=70.96 E-value=22 Score=42.23 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=22.3
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
...++++|.|+||+..|..++..++-
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~~a~~llc 52 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALCFIEGLLS 52 (314)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 55799999999999999988887763
No 485
>PF14954 LIX1: Limb expression 1
Probab=70.65 E-value=3.6 Score=43.86 Aligned_cols=71 Identities=23% Similarity=0.212 Sum_probs=44.1
Q ss_pred CCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCC--CCccchhhhH
Q 000379 1508 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPR--ADKKSSFDSA 1585 (1604)
Q Consensus 1508 ~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~--ssKK~A~~~A 1585 (1604)
.|-...||||=|.+.-.-..+. +.++++-++.|+.. +-|+|=||+- +| +|.|.=. ++|-+|+++|
T Consensus 21 vnvV~~LqeFWq~Kq~r~a~~~-----~~~lv~YEs~ps~~---ppyVcyVTLP---GG--SCFGnfq~C~tkAEARR~A 87 (252)
T PF14954_consen 21 VNVVEALQEFWQMKQSRGADLK-----SEALVVYESVPSPS---PPYVCYVTLP---GG--SCFGNFQNCPTKAEARRSA 87 (252)
T ss_pred chHHHHHHHHHHHHHhccccCC-----CCCeeeeeccCCCC---CCeEEEEeCC---CC--CccCccccCCcHHHHHhhh
Confidence 3445999998776543332221 11334444677666 6788777763 22 2333222 7899999999
Q ss_pred HHHHHH
Q 000379 1586 ALIMLH 1591 (1604)
Q Consensus 1586 A~~~l~ 1591 (1604)
|+.||-
T Consensus 88 AKiALm 93 (252)
T PF14954_consen 88 AKIALM 93 (252)
T ss_pred HHHHHH
Confidence 999984
No 486
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=70.54 E-value=5.6 Score=44.97 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=32.4
Q ss_pred HHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecCh
Q 000379 55 EVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103 (1604)
Q Consensus 55 ~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~ 103 (1604)
+.+..+.+.|.+-||||||..+-.++.++.. ..+..++++=|.-
T Consensus 19 ~~l~~~H~~I~G~TGsGKS~~~~~ll~~l~~-----~~~~~~ii~D~~G 62 (229)
T PF01935_consen 19 NKLFNRHIAIFGTTGSGKSNTVKVLLEELLK-----KKGAKVIIFDPHG 62 (229)
T ss_pred HHhccceEEEECCCCCCHHHHHHHHHHHHHh-----cCCCCEEEEcCCC
Confidence 3455789999999999999998888888763 1333466666653
No 487
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=70.53 E-value=6.2 Score=46.21 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.6
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
.++++.+|+|||||.+|..+...+..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 37899999999999999887766543
No 488
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=70.28 E-value=17 Score=49.61 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=62.0
Q ss_pred CcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEcc-ccccccCCCC
Q 000379 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATD-VIEEGMHVPN 492 (1604)
Q Consensus 414 ~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~-vleeGIDip~ 492 (1604)
+.+++|.|+++.-|...++.++..-..-++++..++|. .+.+++.++++.+++|+.+|+|+|. .+...+.+.+
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~------~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~ 573 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRF------RSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKD 573 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEecc------ccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCccc
Confidence 35899999999999988887776422224678888887 5788899999999999999999997 3445567777
Q ss_pred ccEEEE
Q 000379 493 CSYVIR 498 (1604)
Q Consensus 493 ~nlVI~ 498 (1604)
+.+||.
T Consensus 574 L~llVI 579 (926)
T TIGR00580 574 LGLLII 579 (926)
T ss_pred CCEEEe
Confidence 777764
No 489
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=69.70 E-value=5.2 Score=46.64 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.9
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
++.+++++|+|||||.+|+.+.+++.
T Consensus 65 GrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 65 GRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred ccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 37789999999999999999888874
No 490
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=69.52 E-value=1.2e+02 Score=33.48 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=68.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec---ChhhHHHHHHH---HHhh-cCCcEEEEECCCCCCccc
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP---TVHLVHQQYDV---IRVH-TDFEVEEYYGAKGVDEWD 134 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP---t~~Lv~Q~~~~---i~~~-~~~~v~~~~G~~~~~~~~ 134 (1604)
++|-++.|+|||.....+++-++. .+.++.+++. +++...|...- +..+ +.-....+.-+...-.|.
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~------~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~ 104 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLM------NGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWG 104 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHh------CCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccC
Confidence 578899999999988888777765 3444666653 33333332111 0001 111111111111122343
Q ss_pred hhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHH---HHHHHhhcCCCCcEEEEeccCC
Q 000379 135 SQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI---MKEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 135 ~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i---m~~~~~~~~~~p~iLgLTATP~ 211 (1604)
.+.-+ .+++.+. .++.+.+-+++|+|=-.+..-+.....+ |..+ ......-+++.+|+-|.
T Consensus 105 ~~~~~--------------~~L~~l~-~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~-r~l~d~gKvIilTvhp~ 168 (235)
T COG2874 105 RRSAR--------------KLLDLLL-EFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFL-RKLSDLGKVIILTVHPS 168 (235)
T ss_pred hHHHH--------------HHHHHHH-hhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHH-HHHHhCCCEEEEEeChh
Confidence 32222 2233222 1233556789999998888755433333 3322 33445679999999986
Q ss_pred CC
Q 000379 212 VR 213 (1604)
Q Consensus 212 ~~ 213 (1604)
.-
T Consensus 169 ~l 170 (235)
T COG2874 169 AL 170 (235)
T ss_pred hc
Confidence 43
No 491
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=69.11 E-value=12 Score=43.88 Aligned_cols=95 Identities=20% Similarity=0.187 Sum_probs=55.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---------CCcEEEEECCCCCCc
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---------DFEVEEYYGAKGVDE 132 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---------~~~v~~~~G~~~~~~ 132 (1604)
++|++||++|||-.|+-+++.+- . .+|-+.+ .|.++.+.--+ +++-..+.--...+.
T Consensus 6 i~I~GPTAsGKT~lai~LAk~~~--------~--eIIs~DS----mQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ 71 (308)
T COG0324 6 IVIAGPTASGKTALAIALAKRLG--------G--EIISLDS----MQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTES 71 (308)
T ss_pred EEEECCCCcCHHHHHHHHHHHcC--------C--cEEecch----hhhcCCCcccCCCCCHHHHcCCCEEEecccCcccc
Confidence 57899999999999999887641 1 3555555 34444432211 222222221112223
Q ss_pred cchhHHHHh----------cCCCcEEEEcHHHHHHHHHhcCcCcccee
Q 000379 133 WDSQCWQKE----------INKNDVLVMTPQILLDALRKAFLSLDIVC 170 (1604)
Q Consensus 133 ~~~~~w~~~----------~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~ 170 (1604)
++...|... .+..-|+|+=....++.+.+|...+...+
T Consensus 72 ysa~~f~~~a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~ 119 (308)
T COG0324 72 YSAAEFQRDALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEAD 119 (308)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCCCCC
Confidence 333333211 13578999999999999988876565443
No 492
>CHL00176 ftsH cell division protein; Validated
Probab=69.11 E-value=17 Score=47.38 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=19.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~ 82 (1604)
+++++++|+|+|||+.|-.++.+
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999988766543
No 493
>PRK10436 hypothetical protein; Provisional
Probab=68.98 E-value=7 Score=48.86 Aligned_cols=40 Identities=23% Similarity=0.164 Sum_probs=29.7
Q ss_pred CCCCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHHHHH
Q 000379 43 NFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliailli~~ 82 (1604)
.+...+.|.+.+..+.. +-+++++|||||||.....++.+
T Consensus 199 ~LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~ 241 (462)
T PRK10436 199 TLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQT 241 (462)
T ss_pred HcCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHh
Confidence 45567788888887753 55789999999999866555544
No 494
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=68.81 E-value=9.5 Score=51.43 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=73.2
Q ss_pred CCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceE-EEEccccccccCC
Q 000379 412 STQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL-LFATDVIEEGMHV 490 (1604)
Q Consensus 412 ~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~i-LIaT~vleeGIDi 490 (1604)
+...++|||+.--..-+++...+.-. ++..... |. .++-.+.+..|++ +.| |+-++..+-|+|+
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N----~I~~~~~-~~--------t~d~~dc~~~fk~--I~clll~~~~~~~GLNL 1283 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMN----LIKKQLD-GE--------TEDFDDCIICFKS--IDCLLLFVSKGSKGLNL 1283 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhh----hhHhhhc-cC--------Ccchhhhhhhccc--ceEEEEEeccCcccccH
Confidence 45579999999888877777766542 2322222 21 1233567788887 554 4668899999999
Q ss_pred CCccEEEEcCCCCCHHHHHHHhhhhcccCceE
Q 000379 491 PNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522 (1604)
Q Consensus 491 p~~nlVI~fD~p~s~~syiQr~GRA~R~gs~~ 522 (1604)
-.+.+|+..++-.|+..-.|.+||..|.|++-
T Consensus 1284 ~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1284 IEATHVFLVEPILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred HhhhhhheeccccCchHHHhhhhhhhhccccc
Confidence 99999999999999999999999999999973
No 495
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=68.63 E-value=6.3 Score=45.53 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=25.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEe
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLA 100 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~Lv 100 (1604)
++|++++|+|||..+..++.+.+. .+.+++|+.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~------~Ge~vlyis 71 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQAS------RGNPVLFVT 71 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh------CCCcEEEEE
Confidence 678999999999999988776554 234477777
No 496
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=68.60 E-value=23 Score=48.19 Aligned_cols=25 Identities=40% Similarity=0.403 Sum_probs=22.0
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|.|+++|.|+|||.++-.++..+.
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHh
Confidence 7899999999999999988877654
No 497
>PRK08760 replicative DNA helicase; Provisional
Probab=68.40 E-value=13 Score=46.85 Aligned_cols=113 Identities=18% Similarity=0.176 Sum_probs=57.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh-cCCcEEE-EECCCCCCccchh-HH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH-TDFEVEE-YYGAKGVDEWDSQ-CW 138 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~-~~~~v~~-~~G~~~~~~~~~~-~w 138 (1604)
+||.+.+|.|||..++-++.+... . .+..|+|...- .=..|+...+... .++.... ..|......|..- ..
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~----~-~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a 305 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAI----K-SKKGVAVFSME-MSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGA 305 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHH----h-cCCceEEEecc-CCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHH
Confidence 568899999999999988877653 1 23346666543 2245666655433 2232211 1233333333311 11
Q ss_pred HHhcCCCcEEEE-----cHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 139 QKEINKNDVLVM-----TPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 139 ~~~~~~~~ViV~-----T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
...+.+..+.|. |++.+...+++- ..-..+++||||=.+.+.
T Consensus 306 ~~~l~~~~l~I~d~~~~t~~~I~~~~r~l-~~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 306 IKMLKETKIFIDDTPGVSPEVLRSKCRRL-KREHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHhcCCEEEeCCCCCCHHHHHHHHHHH-HHhcCCCEEEEecHHhcC
Confidence 122334445443 444444433321 112347899998776663
No 498
>PRK13695 putative NTPase; Provisional
Probab=68.31 E-value=61 Score=34.73 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=18.4
Q ss_pred CEEEEeCCCChHHHHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~ 83 (1604)
++.+.++.|+|||..+..++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999877665543
No 499
>PHA02542 41 41 helicase; Provisional
Probab=68.29 E-value=11 Score=47.41 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=29.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i 113 (1604)
+||.+.+|.|||..++-++.+... .+..|+|+.-- .=..|+...+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~------~g~~Vl~fSLE-M~~~ql~~Rl 237 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQ------QGYNVLYISME-MAEEVIAKRI 237 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHh------cCCcEEEEecc-CCHHHHHHHH
Confidence 568899999999999988877653 23346665421 1124555544
No 500
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=68.27 E-value=6.6 Score=45.72 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=32.6
Q ss_pred HHHHHHHHhh--ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 49 YQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 49 yQ~e~l~~~l--~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
...+.+..+. ++|++++++||||||...-.++..+-. ...+++.+=.+.++
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPP------EDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHT------TTSEEEEEESSS-S
T ss_pred HHHHHHhhccccceEEEEECCCccccchHHHHHhhhccc------cccceEEeccccce
Confidence 3344444442 588999999999999877655543311 23567777777665
Done!