Query 000379
Match_columns 1604
No_of_seqs 521 out of 4192
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 16:00:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000379.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_159-163//hhsearch_pdb/000379hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qvw_A GLP_546_48378_50642; di 1.0 1 1 581.8 33.5 519 731-1367 15-755 (756)
2 2ykg_A Probable ATP-dependent 1.0 1 1 413.6 39.6 474 40-537 8-524 (696)
3 4gl2_A Interferon-induced heli 1.0 1 1 402.1 35.6 463 41-531 3-521 (699)
4 4a2w_A RIG-I, retinoic acid in 1.0 1 1 397.5 44.5 465 42-537 245-757 (936)
5 4a2q_A RIG-I, retinoic acid in 1.0 1 1 396.7 44.6 464 42-538 245-758 (797)
6 4a2p_A RIG-I, retinoic acid in 1.0 1 1 393.0 42.0 466 41-539 3-518 (556)
7 3tbk_A RIG-I helicase domain; 1.0 1 1 388.9 39.9 465 43-537 2-515 (555)
8 1wp9_A ATP-dependent RNA helic 1.0 1 1 367.1 39.0 443 39-535 3-481 (494)
9 2db3_A ATP-dependent RNA helic 1.0 1 1 338.1 33.7 334 43-542 76-421 (434)
10 3eiq_A Eukaryotic initiation f 1.0 1 1 337.6 25.5 333 42-540 59-398 (414)
No 1
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=1.00 E-value=1 Score=581.77 Aligned_cols=519 Identities=18% Similarity=0.204 Sum_probs=372.5
Q ss_pred CCCCCCEEEEECCCCCCCCCCCEEEEEEECCEEEEEEE-CCCCC-CCCHHHHHHHHHHHHHHHHHHHHHC---HHCCCCC
Q ss_conf 23454447961355687678821447742653699982-37431-1499999999999999999962100---1113588
Q 000379 731 TEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVS-SSGQV-HLDADQMSKAKCFQELFFNGLFGKL---FVKSKSS 805 (1604)
Q Consensus 731 ~~~~~~~~ll~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~f~~~~f~~v~~~~---~~~~~~~ 805 (1604)
.+.+..+.++++++||. ...|++|...|.+.+++. .+|++ .++.+|++.+++||.++|+.++... +... +
T Consensus 15 ~~~~~~~~~l~~~~l~~---~~~f~~~~~~g~~~v~v~~~~~~~~~l~~~q~~~~~~Fq~~lf~~~l~~~~~~~~~~--~ 89 (756)
T 2qvw_A 15 TRGPSHWLLLLDTHLGT---LPGFKVSAGRGLPAAEVYFEAGPRVSLSRTDATIVAVYQSILFQLLGPTFPASWTEI--G 89 (756)
T ss_dssp SSCEEEEEEEESSCCCS---CCCEEECSBTTBCCEEEECCBCCCCCCCHHHHHHHHHHHHHHHHHHCTTSCSCHHHH--H
T ss_pred CCCCCEEEEEECCCCCC---CCCCEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHC--C
T ss_conf 68851031124377888---898422557895568998623886566999999999999999998702332023303--6
Q ss_pred CCCCHHHC-CCCCCCCCCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87200201-23567889983-18998122235689998312356645554113565510112222348999999999899
Q 000379 806 GSREFFLK-RETNSLWSPSY-MYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTS 883 (1604)
Q Consensus 806 ~~~~~~~~-~~~~~~~~~~~-~~l~~Pl~~~~~~~~~~~~IDw~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 (1604)
....++.. .++=..+++.. .||+||+... ...|||+.|...+ ..... ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~Yll~Pl~~~------~~~iDw~~v~~s~---~~~~~----------~~~--------- 141 (756)
T 2qvw_A 90 ATMPHNEYTFPRFISNPPQFATLAFLPLLSP------TSPLDLRALMVTA---QLMCD----------AKR--------- 141 (756)
T ss_dssp HTCCGGGSSSTTCCCCCSCCCCEEEEEESST------TCCCCSHHHHHHH---HHHHT----------CCC---------
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCC------CCCEEHHHHHHHH---HHCCC----------CCC---------
T ss_conf 5433210134212577865443899967898------8842206533234---42035----------678---------
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCC-CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 99777788731012478767123358399832599-24899986189988999999999998139999854405311279
Q 000379 884 PCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTG-RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHP 962 (1604)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~l~~~vv~~~~~~-~~Y~v~~i~~d~tp~spf~~~~~~~~~ty~~Yy~~k~~~~i~~~ 962 (1604)
..-.+.++....+.+.|++|++.|++ +.|+|.+|++|+||.|+|+.. +.+.||.+||+++|++.|.++
T Consensus 142 ---------~~~~~~d~~~~~~~l~g~vV~t~ynn~r~Y~i~~id~d~~P~S~F~~~--~~~~Ty~dYYk~ky~i~I~d~ 210 (756)
T 2qvw_A 142 ---------LSDEYTDYSTLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRA--NESITYMRYYATAHNIHLRAA 210 (756)
T ss_dssp ---------GGGC------CTTTSTTCEEEETTTTTEEEEEEEEEEEEETTSEEEET--TEEEEHHHHHHHTTCCCCSCT
T ss_pred ---------CCCCCCCCHHHHHHHCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCC--CCCCCHHHHHHHHCCCCCCCC
T ss_conf ---------851103423568882798895588885389998764799988767889--998779999998739622469
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCHHHHH--HHHHCHHHHHHHHHHHH
Q ss_conf 9750983045775335655679999988888887888887235427534066024188999--98210799999998871
Q 000379 963 GQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVK--SLYLLPSVMQRLESLML 1040 (1604)
Q Consensus 963 ~QPlL~~~~~~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~~~p~~~~~--~~~~lPsi~~r~~~~l~ 1040 (1604)
+||||.++++.+.+|+..+. .+ ......+..++||||+|.++++|+++|+ ++.+||||+||||++++
T Consensus 211 ~QPLL~~~~~~~~~~~r~~~---~~--------~~~~~~~~~v~L~PELC~vt~Lp~sl~~~~~~~~lPsil~rie~ll~ 279 (756)
T 2qvw_A 211 DLPLVAAVRLDDLKDHQIPA---PG--------SWDDLAPKLRFLPPELCLLLPDEFDLIRVQALQFLPEIAKHICDIQN 279 (756)
T ss_dssp TSEEEEEEETTTTTTCCCCS---TT--------C-CCSCSSCEEECTTTCEECCTTSCTTHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCCCCC---CC--------CCCCCCCCCEEECHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98728887323333434555---55--------54567765301077882013686347888788771899999999999
Q ss_pred HHH-HHHHHHCCCCCC-CCCHHHHHHHHCCCCCCCC---------------------CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999-999970115789-9996899996526777889---------------------98413543323578889999998
Q 000379 1041 ASQ-LREEINCHSRNF-HIPSSLILEALTTLGCCES---------------------FSMERLELLGDSVLKYAVSCHLF 1097 (1604)
Q Consensus 1041 a~~-l~~~l~~~~~~~-~i~~~~ll~AlT~~s~~~~---------------------~n~ErLE~LGDs~Lk~~~s~~l~ 1097 (1604)
|.+ ++. .+... .| +..+++|||+++|.+. .|||||||||||||++++|.+||
T Consensus 280 a~~al~~----~~p~~~~i-~~~~leAlT~~~~~~~g~~~~~~~~~~AlTh~s~~~~~nnERLEfLGDavL~~~vs~~L~ 354 (756)
T 2qvw_A 280 TICALDK----SFPDCGRI-GGERYFAITAGLRLDQGRGRGLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLL 354 (756)
T ss_dssp HHHHHGG----GSCCCSCC-HHHHHHHHHHHHBCSCCBTTBSBTTEEECBGGGBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----CCCCCCCC-CHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999985----28862446-789999875654122013432034444145645567887279999999999999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 50999995167999878461099999978379754212355778875589866778877878977665468897434565
Q 000379 1098 LTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDT 1177 (1604)
Q Consensus 1098 ~~~p~~~eg~Ls~~r~~~vsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1177 (1604)
.+||+.+||.||.+|+.+|||.+|+++|.++||+.||+..++..
T Consensus 355 ~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e~------------------------------------ 398 (756)
T 2qvw_A 355 CLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLV------------------------------------ 398 (756)
T ss_dssp HHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC-------------------------------------
T ss_pred HHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHCCCCCCC------------------------------------
T ss_conf 97899984389999999848158999999868078853489977------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHCCCCC-C--------CC---------------
Q ss_conf 3002776689863237741577999988885334-776789999999277666-5--------50---------------
Q 000379 1178 KVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVG-GGLIAALYMMKWLGIDAD-L--------EV--------------- 1232 (1604)
Q Consensus 1178 ~~~~~~~~~~~~~~~~~K~iAD~vEAliGA~~~~-~G~~~a~~~~~~lg~~~~-~--------~~--------------- 1232 (1604)
..+|.+||+|||+|||+|+| +|++.|..|+..+-.+.. . ++
T Consensus 399 --------------~~~~ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~~ia 464 (756)
T 2qvw_A 399 --------------AKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTVGSACPDAVTKASKRVCMGEAGA 464 (756)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC---CCCHHHHHHHHHHHTSCCCH
T ss_pred --------------CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHH
T ss_conf --------------762277869999848601355576999999999987664301332123582378999998616502
Q ss_pred ----------------------------------------HHHH------------------------HHHH------CC
Q ss_conf ----------------------------------------0123------------------------3310------12
Q 000379 1233 ----------------------------------------SLVD------------------------DCIT------RA 1242 (1604)
Q Consensus 1233 ----------------------------------------~~~~------------------------~~~~------~~ 1242 (1604)
.|.. ++.. ..
T Consensus 465 ~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~~~~~~f~~w~g~~~~~~~~~~~~~~~~~ks~~d~~~al~~g~~l~~~ 544 (756)
T 2qvw_A 465 HEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIPAEDMLDWYRLGIQFSHRSGLSGPGGVVSVIDIMTHLARGLWLGSP 544 (756)
T ss_dssp HHHHHHHHHTTTTTCCCBSSSHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTSSCSSCCSCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCC
T ss_conf 22666666776401100000578999998640465576776507760003545545664211056589886237620466
Q ss_pred -------------------CC----C-CC-CC--------------CHHHHHHHHHHHCCCCCC----------------
Q ss_conf -------------------22----3-36-78--------------878899999981985498----------------
Q 000379 1243 -------------------SL----R-SY-VP--------------RINEIKDIESKIGYEFTV---------------- 1267 (1604)
Q Consensus 1243 -------------------~~----~-~~-~~--------------~~~~~~~le~~lgy~F~~---------------- 1267 (1604)
+. . .. .| ....+..+|++|||+|+|
T Consensus 545 g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~ 624 (756)
T 2qvw_A 545 GFYVEQQTDKNESACPPTIPVLYIYHRSVQCPVLYGSLTETPTGPVASKVLALYEKILAYESSGGSKHIAAQTVSRSLAV 624 (756)
T ss_dssp EEECCC---------CCEEECCTTTTSSSCCTTTTCCCC---CTTTHHHHHHHHHHHHSSCCCCSSHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 53212222221334666786033302333475323433456521034667999999958886576313667665431023
Q ss_pred ----------HHHHHHHHCCCCCCCCCCHH----------------HHHHHHCCCCHHHHHHHHHHHHCCCCC----CCC
Q ss_conf ----------88999988167988987627----------------887770136957799999998809999----997
Q 000379 1268 ----------KFLLQEAITHASVQEFYCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFPKP----GET 1317 (1604)
Q Consensus 1268 ----------~~lL~~AlTH~S~~~~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~~~----~~~ 1317 (1604)
+.||.+||||+| || +||+.+|..++|.++.++..++.-... .+.
T Consensus 625 ~i~~~~~~~~~~LL~~AlTH~S------neRLEfLGDaVL~l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~l 698 (756)
T 2qvw_A 625 PIPSGTIPFLIRLLQIALTPHV------YQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRF 698 (756)
T ss_dssp CCCSSCHHHHHHHHHHHHSTGG------GHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 4333434243899999805754------0579877899999999999997289998679999999995870899999986
Q ss_pred C---------CCCCCCCCCCHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 8---------9999999972245789998762165079886899999886213645899
Q 000379 1318 T---------DSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPD 1367 (1604)
Q Consensus 1318 ~---------~~~~~~~~~k~l~D~~EaliGAi~lDsg~~~~~~~~~~~~~l~~~i~~~ 1367 (1604)
+ +.......+|+++|+|||++||||+|+|+ +.+++|+.+++.+.++.+
T Consensus 699 g~~L~~~l~~~~~e~~~~~kilaD~~EAliGAiylD~G~--~~a~~~v~~~~~~~l~~~ 755 (756)
T 2qvw_A 699 PSVVSEVIIESHPKIQPDSKVYGDTFEAILAAILLACGE--EAAGAFVREHVLPQVVAD 755 (756)
T ss_dssp CTHHHHHHHHHSTTCCTTCSHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHTGGGCCCC
T ss_pred CCCHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHCC
T ss_conf 510999974086121478529999999999999996799--999999999999886212
No 2
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=1.00 E-value=1 Score=413.60 Aligned_cols=474 Identities=23% Similarity=0.341 Sum_probs=297.1
Q ss_pred CCCCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC-
Q ss_conf 8879999088999999961-36999990899739999999999999998607997099999268444999999998526-
Q 000379 40 NSINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT- 117 (1604)
Q Consensus 40 ~~~~~~pR~yQ~e~l~~al-~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~- 117 (1604)
......||+||.++++.++ ++|+|+++|||+|||+++++++.+.+.... .+.+++++|++|+++|+.||.+++++++
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~ 86 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-QGQKGKVVFFANQIPVYEQNKSVFSKYFE 86 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-TTCCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 24778866999999999971898899949996099999999999998475-67787499997888899999999999825
Q ss_pred --CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf --97189998788877302267887217993999849999999972276-766443999937510038994999999998
Q 000379 118 --DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1604)
Q Consensus 118 --~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i-~l~~i~liI~DEaH~~~~~~~~~~im~~~~ 194 (1604)
++++..++|+...... +.......+|+|+||++|.+.+.++.+ .+.++++||+||||++.+.++|..+|..++
T Consensus 87 ~~~~~v~~~~g~~~~~~~----~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l 162 (696)
T 2ykg_A 87 RHGYRVTGISGATAENVP----VEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 162 (696)
T ss_dssp TTTCCEEEECSSSCSSSC----HHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCC----HHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 388249999588665435----8985259999997889999998607666403131899928875467653899999999
Q ss_pred HH-----CCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECC--CHHHHHHCCCCCCEEEEECCCCCC--
Q ss_conf 30-----699981999932478787878821189999999966089343036--322261106786110034358776--
Q 000379 195 HK-----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE--DKTEMEVFVPSAKESCRFYDQSKF-- 265 (1604)
Q Consensus 195 ~~-----~~~~prIlgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~--~~~~l~~~~~~p~e~~~~y~~~~~-- 265 (1604)
.. ....|+++||||||..++. .........+..+...++..+.... ....+..++..|.+....+.....
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~~~~~-~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVGVGDA-KTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCCCSSC-CSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHHCCCCCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf 97631357777869997276566765-34899999999999746984675111343778755489811588557666773
Q ss_pred CCCCHH---HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
Q ss_conf 644113---4566433100045799997586542110257999999999---------------9999999999984157
Q 000379 266 CGSDLK---GKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLS---------------DYHAKILYCLDELGLI 327 (1604)
Q Consensus 266 ~~~~l~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~~~~~~~~~lG~~ 327 (1604)
++..+. ..++.....+......+.......+ ....+..+...+. .....+......+...
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREF--GTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCS--SSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999987630355553--41449999999988888863124045667889988999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHCCC---CCCCCC--CCCCCCCCHHHHH
Q ss_conf 799999999999565678999998756999999999999983006851-0110024---577211--1136999988999
Q 000379 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLA-DKIFLDF---GFDYSK--AVDLGYISTKLHE 401 (1604)
Q Consensus 328 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~---~~~~~~--~~~~~~~s~K~~~ 401 (1604)
. .... +..... ......++......+....... ....... ...... .......++|+..
T Consensus 320 ~--~~~~--i~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~ 384 (696)
T 2ykg_A 320 N--DALI--ISEHAR-----------MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLED 384 (696)
T ss_dssp H--HHHH--HHHHSC-----------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHH
T ss_pred H--HHHH--CCCHHH-----------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 6--7775--013065-----------999999999999988641553688999998888788998874078878979999
Q ss_pred HHHHHHHH-CCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC--CCCCCHHHHHHHHHHHHC-CCCEE
Q ss_conf 99999960-999994899997117899999999741999997059999767888--898999999999999718-99309
Q 000379 402 LLQLFLSF-GKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS--VDALTPKVQKEVLESFRG-GKVNL 477 (1604)
Q Consensus 402 L~~iL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~--~~~l~~~~r~~vl~~Fr~-g~~ni 477 (1604)
|.+++... ....+.++||||+++.+++.+.+.|...+.+.++++..++|.+.. ..+|+.++|.+++++|++ |+.+|
T Consensus 385 L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~v 464 (696)
T 2ykg_A 385 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI 464 (696)
T ss_dssp HHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSC
T ss_pred HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 99999998524899849999480799999999997388755301269971587755467899999999999873697137
Q ss_pred EEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCC-CCEEEEEEECCCHHHHHHH
Q ss_conf 99804433565778742899907899977999976311135-8659999814679999999
Q 000379 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH-NSQFILMLERGNLKQRNKL 537 (1604)
Q Consensus 478 LIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~-gs~~i~lv~~~~~~~~~~l 537 (1604)
||||+++++|||+|+|++||+||+|++..+|+||+|| +|. ++.+++|+..++..+...+
T Consensus 465 LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 465 LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp SEEEESSCCC---CCCSEEEEESCC--CCCC----------CCCEEEEEESCHHHHHHHHH
T ss_pred EEEECHHHCCCCCCCCCEEEEECCCCCHHHHHHHHCC-CCCCCCEEEEEECCCCHHHHHHH
T ss_conf 9982216408767447889993798988999885264-76778629999668888889887
No 3
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=1.00 E-value=1 Score=402.08 Aligned_cols=463 Identities=24% Similarity=0.340 Sum_probs=306.9
Q ss_pred CCCCCCCHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH-HHHHHHHCC
Q ss_conf 8799990889999999613-69999908997399999999999999986079970999992684449999-999985269
Q 000379 41 SINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ-YDVIRVHTD 118 (1604)
Q Consensus 41 ~~~~~pR~yQ~e~l~~al~-~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq-~~~i~~~~~ 118 (1604)
...++||+||.++++.++. +|+|+++|||+|||+++++++.+++......+.+++++|++|+++|+.|| +++++++++
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 77777248899999999837999998699986899999999999984645578880999979999999999999999717
Q ss_pred --CCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHH------HHCCCCCCCEEEEEEECCCCCCCCCHHHHHH
Q ss_conf --71899987888773022678872179939998499999999------7227676644399993751003899499999
Q 000379 119 --FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL------RKAFLSLDIVCFIVIDECHHATGNHPYTKIM 190 (1604)
Q Consensus 119 --~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l------~~~~i~l~~i~liI~DEaH~~~~~~~~~~im 190 (1604)
+.+..++|+..... .|.......+|+|+||++|.+.+ ..+.+.+..+++||+||||++...+.|..++
T Consensus 83 ~~~~v~~~~g~~~~~~----~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKI----SFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp TTSCEEEEC----CCC----CHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred CCCEEEEEECCCCHHH----HHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCEECCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 6714999857832215----777652379999989899999974343343351212547689997731147665399999
Q ss_pred HHHHHHC-------------CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC-CEEECC-CHHHHHHCCCCCCE
Q ss_conf 9998306-------------99981999932478787878821189999999966089-343036-32226110678611
Q 000379 191 KEFYHKS-------------DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS-QVFTIE-DKTEMEVFVPSAKE 255 (1604)
Q Consensus 191 ~~~~~~~-------------~~~prIlgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~-~i~t~~-~~~~l~~~~~~p~e 255 (1604)
..++... ...|++++|||||..+.. .........+..+...++. .+.++. ++..+..++..|..
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~-~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~ 237 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGA-TKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCK 237 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSC-CSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEE
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCE
T ss_conf 99998543145544344567888879974366554554-46799999999998516987788524856777643689865
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 003435877664411345664331000-----------------457999975865421102579999999999999999
Q 000379 256 SCRFYDQSKFCGSDLKGKLEVSWSKFD-----------------ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL 318 (1604)
Q Consensus 256 ~~~~y~~~~~~~~~l~~~~~~~~~~~~-----------------~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (1604)
....+....... ....+......+. .++..+........ ..........+. .+....
T Consensus 238 ~~~~~~~~~~~~--~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~-~~~~~~ 311 (699)
T 4gl2_A 238 KFAIADATREDP--FKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEG---NRKERVCAEHLR-KYNEAL 311 (699)
T ss_dssp EEEEEC-----C--HHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHT---CTTTHHHHHHHH-HHHHHH
T ss_pred EEEECCCCCCCH--HHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHH
T ss_conf 999746666771--79999999999998855585221160678899999988887753---215589999988-787889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH---HHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCC
Q ss_conf 9999841577999999999995656789-----9999---8756999999999999983006851011002457721111
Q 000379 319 YCLDELGLICAYEAVKICLEKVLKAQEE-----CEIY---RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV 390 (1604)
Q Consensus 319 ~~~~~lG~~~a~~~~~~~l~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 390 (1604)
......+.+.+...+............. .... .................+.... .
T Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~-----------------~ 374 (699)
T 4gl2_A 312 QINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLA-----------------E 374 (699)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHH-----------------T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-----------------H
T ss_conf 88878888989999999999987531022233321011236268999998988789999986-----------------4
Q ss_pred CCCCCCHHHHHHHHHHHH-HCCCC-CCEEEEEECHHHHHHHHHHHHHHCCCCC--CEEEEEEECCCCCC--CCCCHHHHH
Q ss_conf 369999889999999996-09999-9489999711789999999974199999--70599997678888--989999999
Q 000379 391 DLGYISTKLHELLQLFLS-FGKST-QVLCIIFVERIIAAKVVERFVKKVPFLT--HLTVAYLTGSTTSV--DALTPKVQK 464 (1604)
Q Consensus 391 ~~~~~s~K~~~L~~iL~~-~~~~~-~~k~IIFv~~r~ta~~L~~~L~~~~~~~--~~~~~~l~G~~~~~--~~l~~~~r~ 464 (1604)
.....++|+..|.++|.. +...+ +.++||||+++.+++.+.+.|...+.+. ++.+..+||.+.+. .+|+..+|.
T Consensus 375 ~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~ 454 (699)
T 4gl2_A 375 NPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQK 454 (699)
T ss_dssp CCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 67778879999999999997147999819999792999999999997473322368644999778876677788999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCH
Q ss_conf 9999971899309998044335657787428999078999779999763111358659999814679
Q 000379 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNL 531 (1604)
Q Consensus 465 ~vl~~Fr~g~~niLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs~~i~lv~~~~~ 531 (1604)
+++++|++|+.+|||||+++++|||+|+|++||+||+|+|+.+|+||+|||||.|+.++++...++.
T Consensus 455 ~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g~~~~l~~~~~~~ 521 (699)
T 4gl2_A 455 EVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSG 521 (699)
T ss_dssp HHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSSCEEEEEEESSSC
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEECCCH
T ss_conf 9999986699758997464126875634888999479999899988708788999669999817856
No 4
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=397.49 Aligned_cols=465 Identities=24% Similarity=0.364 Sum_probs=306.7
Q ss_pred CCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---
Q ss_conf 79999088999999961-36999990899739999999999999998607997099999268444999999998526---
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 42 ~~~~pR~yQ~e~l~~al-~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~--- 117 (1604)
..++||+||.++++.++ ++|+|+++|||+|||+++++++.+.+... ..+.+++++|++|+++|+.||++++++++
T Consensus 245 ~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~-~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-PAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC-CSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 78987799999999998099899996998459999999999999736-55689859999698999999999999971216
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 97189998788877302267887217993999849999999972276-76644399993751003899499999999830
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i-~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
++++..++|+...... +......++|+|+||++|.+.+.++.+ .+..+++||+||||++.+.++|..++..+...
T Consensus 324 ~~~v~~~~G~~~~~~~----~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 324 GYSVQGISGENFSNVS----VEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp TCCEEEECCC-----C----CHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCHHHH----HHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 9559999799631257----897416999999449999999871764533678799998731359986699999999998
Q ss_pred C----CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE-ECC-CHHHHHHCCCCCCEEEEECCCCCCCC-CC
Q ss_conf 6----99981999932478787878821189999999966089343-036-32226110678611003435877664-41
Q 000379 197 S----DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIE-DKTEMEVFVPSAKESCRFYDQSKFCG-SD 269 (1604)
Q Consensus 197 ~----~~~prIlgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~-t~~-~~~~l~~~~~~p~e~~~~y~~~~~~~-~~ 269 (1604)
. ...++++||||||..++. .........+..|...++.... +.. +...+..++.+|......++...... ..
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~-~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNA-KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTC-CSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HHCCCCCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHH
T ss_conf 63137886739986388554540-20899999999999854971553465448999875367762377336556757999
Q ss_pred -HH---HHHHHHHHHHC-------------------HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q ss_conf -13---45664331000-------------------45799997586542110257---------999999999999999
Q 000379 270 -LK---GKLEVSWSKFD-------------------ASLSKLQGSQLNCYKDMDDK---------HKTLRKQLSDYHAKI 317 (1604)
Q Consensus 270 -l~---~~~~~~~~~~~-------------------~~l~~l~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~ 317 (1604)
+. ..+......+. .++..+.... ....++.. ...+...+.. ....
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~--~~~~l~~~~~~~~~~~~l~~~~~~l~~-~~~a 555 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKC--RLLQLEDKEEESRICRALFICTEHLRK-YNDA 555 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHH--HHCCCSCHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 9999999999999988766555320223322577999999999988--774055321035799999999999999-8888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 99999841577999999999995656789999987569999999999999830068510110024577211113699998
Q 000379 318 LYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397 (1604)
Q Consensus 318 ~~~~~~lG~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 397 (1604)
.......+.+.+................. ...... ...+. .....+... .......++
T Consensus 556 l~i~~~~~~~~~~~~l~~~~~~~~~~~~~-~~e~~l---~~~~~-~~~~~l~~~-----------------~~~~~~~~~ 613 (936)
T 4a2w_A 556 LIISEDARIIDALSYLTEFFTNVKNGPYT-ELEQHL---TAKFQ-EKEPELIAL-----------------SKDETNENP 613 (936)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHTTCC-HHHHHH---HHHHH-HHHHHHHHH-----------------HTSTTCCCH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCC-HHHHHH---HHHHH-HHHHHHHHH-----------------HHCCCCCCH
T ss_conf 75002042888999999999987632588-789999---99899-999999976-----------------405677897
Q ss_pred HHHHHHHHHHHH-CCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--CCCCCCHHHHHHHHHHHHC-C
Q ss_conf 899999999960-99999489999711789999999974199999705999976788--8898999999999999718-9
Q 000379 398 KLHELLQLFLSF-GKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT--SVDALTPKVQKEVLESFRG-G 473 (1604)
Q Consensus 398 K~~~L~~iL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~--~~~~l~~~~r~~vl~~Fr~-g 473 (1604)
|+..|.++|... ....+.++||||+++.++..|.++|...+.+.++++..++|.+. .+.+|+..+|.+++++|++ |
T Consensus 614 K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 614 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp HHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999999853589974999969799999999998637353666616996578765678889999999999863159
Q ss_pred CCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 9309998044335657787428999078999779999763111358659999814679999999
Q 000379 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537 (1604)
Q Consensus 474 ~~niLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs~~i~lv~~~~~~~~~~l 537 (1604)
+++|||||+++++|||+|+|++||+||+|+|+.+|+||+||+|...+.+++|+..++.++...+
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GRGR~~~g~vi~Li~~~t~ee~~~~ 757 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKC 757 (936)
T ss_dssp CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC-------CCCEEEEESCHHHHHHHHH
T ss_pred CEEEEEEECCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHH
T ss_conf 8159998072642776055898999389998899999648778888779999869889999999
No 5
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=396.66 Aligned_cols=464 Identities=23% Similarity=0.359 Sum_probs=305.6
Q ss_pred CCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---
Q ss_conf 79999088999999961-36999990899739999999999999998607997099999268444999999998526---
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 42 ~~~~pR~yQ~e~l~~al-~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~--- 117 (1604)
..++||+||.++++.++ ++|+|+++|||+|||+++++++.+.+... ..+.+++++|+||+++|+.||.+++++++
T Consensus 245 g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~-~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-PAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (797)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC-CSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 88999999999999998099989996999729999999999999846-65679969999698999999999999861437
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 97189998788877302267887217993999849999999972276-76644399993751003899499999999830
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i-~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
++++..++|+..... .|......++|+|+||++|.+.+.++.+ .+.++++||+||||++...++|..++..+...
T Consensus 324 ~~~v~~~~g~~~~~~----~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~ 399 (797)
T 4a2q_A 324 GYSVQGISGENFSNV----SVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (797)
T ss_dssp TCCEEEECCC---------CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCHHH----HHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 946999969962324----6997407999999766999999982654651337789998863558876499999999997
Q ss_pred C----CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCE-EECC-CHHHHHHCCCCCCEEEEECCCCCCCCCCH
Q ss_conf 6----9998199993247878787882118999999996608934-3036-32226110678611003435877664411
Q 000379 197 S----DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQV-FTIE-DKTEMEVFVPSAKESCRFYDQSKFCGSDL 270 (1604)
Q Consensus 197 ~----~~~prIlgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i-~t~~-~~~~l~~~~~~p~e~~~~y~~~~~~~~~l 270 (1604)
. ...++++||||||..++. .........+..|...++... .+.. ....+..++.+|......++...... .
T Consensus 400 ~~~~~~~~~~~l~lSATp~~~~~-~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~ 476 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGVGNA-KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNP--F 476 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCCTTC-CSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCH--H
T ss_pred HHCCCCCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCH--H
T ss_conf 63147887859997277554552-24899999999999854984885454317889973588854888457777867--8
Q ss_pred HHHHHHHHHHHCH--------------------------HHHHHHHHHHHHHHHHHH--HHHHH-------HHHHHHHHH
Q ss_conf 3456643310004--------------------------579999758654211025--79999-------999999999
Q 000379 271 KGKLEVSWSKFDA--------------------------SLSKLQGSQLNCYKDMDD--KHKTL-------RKQLSDYHA 315 (1604)
Q Consensus 271 ~~~~~~~~~~~~~--------------------------~l~~l~~~~~~~~~~~~~--~~~~~-------~~~l~~~~~ 315 (1604)
...+......+.. ++..+.... ....+.. ..... ...+.. +.
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~ 553 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKC--RLLQLEDKEEESRICRALFICTEHLRK-YN 553 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHH--HHCCCSSHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHHHHHH-HH
T ss_conf 999999999999999998756776530000114056778999999987--774034320256799999999999999-99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999998415779999999999956567899999875699999999999998300685101100245772111136999
Q 000379 316 KILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395 (1604)
Q Consensus 316 ~~~~~~~~lG~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1604)
.........+.+.+............... .......+........... .. ........
T Consensus 554 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~l----~~----------~~~~~~~~ 611 (797)
T 4a2q_A 554 DALIISEDARIIDALSYLTEFFTNVKNGP--------YTELEQHLTAKFQEKEPEL----IA----------LSKDETNE 611 (797)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTT--------CCHHHHHHHHHHHTTHHHH----HH----------HHHCTTCC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHHHH----HH----------HHCCCCCC
T ss_conf 88765413258889999999999875047--------6689999999999999999----87----------63078889
Q ss_pred CHHHHHHHHHHHH-HCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--CCCCCCHHHHHHHHHHHHC
Q ss_conf 9889999999996-099999489999711789999999974199999705999976788--8898999999999999718
Q 000379 396 STKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT--SVDALTPKVQKEVLESFRG 472 (1604)
Q Consensus 396 s~K~~~L~~iL~~-~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~--~~~~l~~~~r~~vl~~Fr~ 472 (1604)
++|+..|.++|.. +....+.++||||+++.++..+.++|...+.+.++++..++|.+. ...+|+..+|.+++++|++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 95999999999998505899708999795899999999997475646655218984477545789899999999998513
Q ss_pred -CCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf -993099980443356577874289990789997799997631113586599998146799999999
Q 000379 473 -GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF 538 (1604)
Q Consensus 473 -g~~niLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs~~i~lv~~~~~~~~~~l~ 538 (1604)
|+++|||||+++++|||+|+|++||+||+|+|+.+|+||+||+|...+.+++|+..++.++...+.
T Consensus 692 ~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GRGR~~~g~~i~l~~~~~~ee~~~~~ 758 (797)
T 4a2q_A 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCN 758 (797)
T ss_dssp --CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC-------CCCEEEEECCHHHHHHHHHH
T ss_pred CCCCEEEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHH
T ss_conf 6970499974805447975108989994899988999985388878786599997287688999988
No 6
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=393.02 Aligned_cols=466 Identities=23% Similarity=0.346 Sum_probs=305.7
Q ss_pred CCCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC--
Q ss_conf 879999088999999961-36999990899739999999999999998607997099999268444999999998526--
Q 000379 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-- 117 (1604)
Q Consensus 41 ~~~~~pR~yQ~e~l~~al-~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~-- 117 (1604)
...++||+||.++++.++ ++|+|+++|||+|||+++++++.+.+... ..+.+++++|++|+++|+.||.+++++++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-PAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC-CSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHC-CCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 787787799999999997499899981999718999999999999837-4567986999928899999999999987240
Q ss_pred -CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf -97189998788877302267887217993999849999999972276-7664439999375100389949999999983
Q 000379 118 -DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1604)
Q Consensus 118 -~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i-~l~~i~liI~DEaH~~~~~~~~~~im~~~~~ 195 (1604)
++++..++|+..... .|......++|+|+||+.|.+.+.++.+ .+..+++||+||||++.+.++|..++..++.
T Consensus 82 ~~~~~~~~~g~~~~~~----~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 157 (556)
T 4a2p_A 82 QGYSVQGISGENFSNV----SVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 157 (556)
T ss_dssp GTCCEEECCCC---------CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCH----HHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 6945999828987422----289861799999988999999998375025030779999887535886459999999998
Q ss_pred HC----CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCC-EEECC-CHHHHHHCCCCCCEEEEECCCCCCCCCC
Q ss_conf 06----999819999324787878788211899999999660893-43036-3222611067861100343587766441
Q 000379 196 KS----DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQ-VFTIE-DKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1604)
Q Consensus 196 ~~----~~~prIlgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~-i~t~~-~~~~l~~~~~~p~e~~~~y~~~~~~~~~ 269 (1604)
.. ...++++||||||..++. .........+..++..++.. +.++. +...+..++.+|......+.......
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~-~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 234 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNA-KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNP-- 234 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTC-SSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCH--
T ss_pred HHHCCCCCCCEEEEEECCCCCCCH-HHHHHHHHHHHHHHHHCCCEEECCHHCCHHHHHHCCCCCCEEEEECCCCCCCH--
T ss_conf 530136888769999478566751-66999999999999853984843332026778742799853799827876775--
Q ss_pred HHHHHHHHHHHHCH--------------------------HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Q ss_conf 13456643310004--------------------------57999975865421102---------57999999999999
Q 000379 270 LKGKLEVSWSKFDA--------------------------SLSKLQGSQLNCYKDMD---------DKHKTLRKQLSDYH 314 (1604)
Q Consensus 270 l~~~~~~~~~~~~~--------------------------~l~~l~~~~~~~~~~~~---------~~~~~~~~~l~~~~ 314 (1604)
....+......+.. ++..+.... ....++ .........+.. .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 311 (556)
T 4a2p_A 235 FAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKC--RLLQLEDKEEESRICRALFICTEHLRK-Y 311 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHH--HHC---CHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHHHHHH-H
T ss_conf 9999999999999999888632012103333443356789999999987--764054320167899999999999999-9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999841577999999999995656789999987569999999999999830068510110024577211113699
Q 000379 315 AKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGY 394 (1604)
Q Consensus 315 ~~~~~~~~~lG~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1604)
..........+.+.+............... .......+............ . .......
T Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~----~----------~~~~~~~ 369 (556)
T 4a2p_A 312 NDALIISEDARIIDALSYLTEFFTNVKNGP--------YTELEQHLTAKFQEKEPELI----A----------LSKDETN 369 (556)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSC--------CCHHHHHHHHHHHTTHHHHH----H----------HHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHHH----H----------HCCCCCC
T ss_conf 999988611207899999999999987337--------98789999998766788764----2----------1037899
Q ss_pred CCHHHHHHHHHHHHH-CCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--CCCCCCHHHHHHHHHHHH
Q ss_conf 998899999999960-99999489999711789999999974199999705999976788--889899999999999971
Q 000379 395 ISTKLHELLQLFLSF-GKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT--SVDALTPKVQKEVLESFR 471 (1604)
Q Consensus 395 ~s~K~~~L~~iL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~--~~~~l~~~~r~~vl~~Fr 471 (1604)
.++|+..|.++|... ....+.++||||+++.++..+.+.|...+.+.++++..++|.+. ...+|+..+|.+++++|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99699999999999834799854999976589999999999858775500014787367765565669899999999840
Q ss_pred C-CCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 8-9930999804433565778742899907899977999976311135865999981467999999999
Q 000379 472 G-GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFD 539 (1604)
Q Consensus 472 ~-g~~niLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs~~i~lv~~~~~~~~~~l~~ 539 (1604)
+ |+++|||||+++++|||+|+|++||+||+|+|+..|+||+||+|...+.+++|+..++.++...+..
T Consensus 450 ~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~~l~~~~~~~~~~~~~~ 518 (556)
T 4a2p_A 450 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNR 518 (556)
T ss_dssp ----CCEEEEEC-----------CEEEEETCCSCHHHHHHC--------CCEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHH
T ss_conf 469658999767043377752178899918999788998863878788841899982763677777557
No 7
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=1.00 E-value=1 Score=388.86 Aligned_cols=465 Identities=25% Similarity=0.366 Sum_probs=304.4
Q ss_pred CCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---C
Q ss_conf 9999088999999961-36999990899739999999999999998607997099999268444999999998526---9
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---D 118 (1604)
Q Consensus 43 ~~~pR~yQ~e~l~~al-~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~---~ 118 (1604)
.++||+||.++++.++ ++|+|+++|||+|||+++++++.+.+... ....+++++|++|+++|+.||.+++++++ +
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKF-PCGQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC-CSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf 9887699999999996799889995999839999999999999846-667898799996888999999999998705389
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 7189998788877302267887217993999849999999972276-766443999937510038994999999998306
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i-~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
+.+..++|+..... .|......++|+|+||+.|.+.+.++.+ .+.++++||+||||++.+.++|..++..++...
T Consensus 81 ~~~~~~~g~~~~~~----~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 156 (555)
T 3tbk_A 81 YNIASISGATSDSV----SVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHK 156 (555)
T ss_dssp CCEEEECTTTGGGS----CHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHH----HHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 47999759974012----28987369999997899999998607634401077899977545687334999999999754
Q ss_pred -----CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC-CEEECC-CHHHHHHCCCCCCEEEEECCCCCCCC--C
Q ss_conf -----99981999932478787878821189999999966089-343036-32226110678611003435877664--4
Q 000379 198 -----DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS-QVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCG--S 268 (1604)
Q Consensus 198 -----~~~prIlgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~-~i~t~~-~~~~l~~~~~~p~e~~~~y~~~~~~~--~ 268 (1604)
...++++||||||..++.. ........+..+...+++ .+.++. ....+..++.+|......+....... .
T Consensus 157 ~~~~~~~~~~~l~lSAT~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
T 3tbk_A 157 LGESRDPLPQVVGLTASVGVGDAK-TAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKC 235 (555)
T ss_dssp TSSCCSCCCEEEEEESCCCCTTCC-SHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHH
T ss_pred HCCCCCCCCEEEEEECCCCCCCCC-CHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCHHHH
T ss_conf 112468887399992676667652-2999999999999856980663323578889864699826999826766671999
Q ss_pred CHHH---HHHHHHHHHCH--------------------HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q ss_conf 1134---56643310004--------------------5799997586542110--------257999999999999999
Q 000379 269 DLKG---KLEVSWSKFDA--------------------SLSKLQGSQLNCYKDM--------DDKHKTLRKQLSDYHAKI 317 (1604)
Q Consensus 269 ~l~~---~~~~~~~~~~~--------------------~l~~l~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 317 (1604)
.+.. .+......+.. ++..+.... ..+... ..........+.. +...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~ 313 (555)
T 3tbk_A 236 IISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKAC-SVFQMADKEEESRVCKALFLYTSHLRK-YNDA 313 (555)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHH-HTCCCSSHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 99999999999999998765444312233344102468999999876-665046604677899999999999999-9998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 99999841577999999999995656789999987569999999999999830068510110024577211113699998
Q 000379 318 LYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397 (1604)
Q Consensus 318 ~~~~~~lG~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 397 (1604)
.......+.+.+................ .................. .. ........++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~----~~----------~~~~~~~~~~ 371 (555)
T 3tbk_A 314 LIISEDAQMTDALNYLKAFFHDVREAAF--------DETERELTRRFEEKLEEL----EK----------VSRDPSNENP 371 (555)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHCC-------------HHHHHHHHHHTTHHHH----HH----------HHHCGGGCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHH----HH----------HCCCCCCCCH
T ss_conf 7522002279999999999998763366--------667899999986455666----54----------2047776898
Q ss_pred HHHHHHHHHHHH-CCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--CCCCCCHHHHHHHHHHHHC-C
Q ss_conf 899999999960-99999489999711789999999974199999705999976788--8898999999999999718-9
Q 000379 398 KLHELLQLFLSF-GKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT--SVDALTPKVQKEVLESFRG-G 473 (1604)
Q Consensus 398 K~~~L~~iL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~--~~~~l~~~~r~~vl~~Fr~-g 473 (1604)
|+..|.++|... ....+.++||||+++.++..+...|...+...++.+..++|.+. ...+|+..+|.+++++|++ |
T Consensus 372 k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g 451 (555)
T 3tbk_A 372 KLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASG 451 (555)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999999715689966999967689999999999628676730024897058753345668899999999974279
Q ss_pred CCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 9309998044335657787428999078999779999763111358659999814679999999
Q 000379 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537 (1604)
Q Consensus 474 ~~niLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs~~i~lv~~~~~~~~~~l 537 (1604)
+++|||||+++++|||+|+|++||+||+|+|+..|+||+||+|+.++.+++|+.+++..+...+
T Consensus 452 ~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 452 DNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCCCTTTSCEEEEEESCHHHHHHHHH
T ss_pred CEEEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHH
T ss_conf 7139998160532786603798999179997788777527676789559999758777789987
No 8
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=367.08 Aligned_cols=443 Identities=23% Similarity=0.321 Sum_probs=279.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 98879999088999999961369999908997399999999999999986079970999992684449999999985269
Q 000379 39 TNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 39 ~~~~~~~pR~yQ~e~l~~al~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~~ 118 (1604)
..+..++||+||.++++.++.+++|+++|||+|||+++++++...+. ..+++++|+||+++|+.||+++++++++
T Consensus 3 ~~~~~~~l~~~Q~~~i~~~~~~~~ll~~~tG~GKT~~~~~~~~~~~~-----~~~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 3 LRRDLIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLT-----KYGGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp BCHHHHCCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHH-----HSCSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHH-----CCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 55678786399999999996199899918998789999999999986-----4798599997888999999999998747
Q ss_pred C---CEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 7---1899987888773022678872179939998499999999722767664439999375100389949999999983
Q 000379 119 F---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1604)
Q Consensus 119 ~---~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~ 195 (1604)
. .+..++|+..... +......++|+|+||+.|.+.+.++.+.+.++++||+||||++.+.+.+..++..+..
T Consensus 78 ~~~~~v~~~~g~~~~~~-----~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~ 152 (494)
T 1wp9_A 78 LPPEKIVALTGEKSPEE-----RSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKR 152 (494)
T ss_dssp SCGGGEEEECSCSCHHH-----HHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred CCHHHEEEEECCCCHHH-----HHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 56111687607753355-----6653357989996399999998608715654108999787566888819999999973
Q ss_pred HCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECC--CHHHHHHCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 0699981999932478787878821189999999966089343036--32226110678611003435877664411345
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE--DKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273 (1604)
Q Consensus 196 ~~~~~prIlgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~--~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~ 273 (1604)
....+++++|||||..+ ...+..+...++....... ....+..+..........+.. ...
T Consensus 153 -~~~~~~~l~lTaTp~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 214 (494)
T 1wp9_A 153 -QAKNPLVIGLTASPGST---------PEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDL--------PEI 214 (494)
T ss_dssp -HCSSCCEEEEESCSCSS---------HHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECC--------CHH
T ss_pred -CCCCCEEEEEECCCCCC---------CHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCCCEEEEECCC--------CHH
T ss_conf -28877699995699888---------578999998507000502678758788752787426895688--------588
Q ss_pred HHHHHHHHCHHHHHHHHHH-HHHHH-----HHH-HHHHHHHHHHHHH--------------------HHHHHHHHHHHHH
Q ss_conf 6643310004579999758-65421-----102-5799999999999--------------------9999999998415
Q 000379 274 LEVSWSKFDASLSKLQGSQ-LNCYK-----DMD-DKHKTLRKQLSDY--------------------HAKILYCLDELGL 326 (1604)
Q Consensus 274 ~~~~~~~~~~~l~~l~~~~-~~~~~-----~~~-~~~~~~~~~l~~~--------------------~~~~~~~~~~lG~ 326 (1604)
.......+...+....... ...+. ... .........+... ...........+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (494)
T 1wp9_A 215 YKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGL 294 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf 99999989899999999999735565457773355789999999987533563113479999888889999999985257
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 77999999999995656789999987569999999999999830068510110024577211113699998899999999
Q 000379 327 ICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLF 406 (1604)
Q Consensus 327 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~iL 406 (1604)
................... ..... ......+......+.. .......++|+..|.+++
T Consensus 295 ~~~~~~~~~l~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~------------------~~~~~~~~~k~~~l~~~l 352 (494)
T 1wp9_A 295 SALRAYIKKLYEEAKAGST--KASKE--IFSDKRMKKAISLLVQ------------------AKEIGLDHPKMDKLKEII 352 (494)
T ss_dssp HHHHHHHHHHHHHHHTTCC--HHHHH--HHTSHHHHHHHHHHHH------------------HHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCC--HHHHH--HHHHHHHHHHHHHHHH------------------HHHCCCCCHHHHHHHHHH
T ss_conf 9999999999875223211--45566--6650788989999998------------------874589986999999999
Q ss_pred HHHC-CCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC--CCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9609-99994899997117899999999741999997059999767888--89899999999999971899309998044
Q 000379 407 LSFG-KSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS--VDALTPKVQKEVLESFRGGKVNLLFATDV 483 (1604)
Q Consensus 407 ~~~~-~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~--~~~l~~~~r~~vl~~Fr~g~~niLIaTsv 483 (1604)
.... ...+.++||||+++.++..+.+.|... ++.+..++|.+.. ..+|+..+|.+++++|++|+.+|||||++
T Consensus 353 ~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~ 428 (494)
T 1wp9_A 353 REQLQRKQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSV 428 (494)
T ss_dssp HHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGG
T ss_pred HHHHCCCCCCEEEEEECCHHHHHHHHHHHHHC----CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99843689975999976689999999999975----99807996566544444589999999999986699469998884
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEEEECCCHHHHH
Q ss_conf 3356577874289990789997799997631113586-599998146799999
Q 000379 484 IEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS-QFILMLERGNLKQRN 535 (1604)
Q Consensus 484 leeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs-~~i~lv~~~~~~~~~ 535 (1604)
+++|||+|+|++||+||+|+++..|+||+|||+|.|+ .++.|+..++.++..
T Consensus 429 ~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~ee~~ 481 (494)
T 1wp9_A 429 GEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEAY 481 (494)
T ss_dssp GGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTSHHHHH
T ss_pred CCCCCCCHHCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHH
T ss_conf 12588714379899928988789999987522577884699999569878999
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=338.14 Aligned_cols=334 Identities=19% Similarity=0.274 Sum_probs=244.2
Q ss_pred CCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHH--CCCCEEEEEEECCHHHHHHHHHHHHHHC--
Q ss_conf 9999088999999961-3699999089973999999999999999860--7997099999268444999999998526--
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAPTVHLVHQQYDVIRVHT-- 117 (1604)
Q Consensus 43 ~~~pR~yQ~e~l~~al-~~n~Iv~~~TGsGKTliailli~~~l~~~~~--~~~~~~vliLvPtv~Lv~Qq~~~i~~~~-- 117 (1604)
...|+++|.++++.++ ++|++++++||+|||+++++++...+..... ...+.+++|++||++|+.||+++++++.
T Consensus 76 ~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 155 (434)
T 2db3_A 76 YKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFE 155 (434)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 99999899999999966998899878999823999999999998445321358964899934899999999999997334
Q ss_pred -CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf -9718999878887730226788721799399984999999997227676644399993751003899499999999830
Q 000379 118 -DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 118 -~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
++++..++|+..... .+.....+++|+|+||+.|.+.+.++.+.+.+++++|+||||++... .+...+......
T Consensus 156 ~~~~~~~~~gg~~~~~----~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~-gf~~~~~~i~~~ 230 (434)
T 2db3_A 156 SYLKIGIVYGGTSFRH----QNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDM-GFSEDMRRIMTH 230 (434)
T ss_dssp SSCCCCEECTTSCHHH----HHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTST-TTHHHHHHHHHC
T ss_pred CCCEEEEEECCCCHHH----HHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEECCHHHHHCC-CCHHHHHHHHHH
T ss_conf 7867999978888789----99985069989998748999999728856332776887517666306-719999999972
Q ss_pred --CCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH-HCCCCEEECCCHHHHHHCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf --69998199993247878787882118999999996-608934303632226110678611003435877664411345
Q 000379 197 --SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELES-TLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273 (1604)
Q Consensus 197 --~~~~prIlgLTATP~~~~~~~~~~~~~~~i~~Le~-~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~ 273 (1604)
.....+++++|||+.. .+..+.. .+.. +............ ..+
T Consensus 231 ~~~~~~~q~l~~SAT~~~------------~~~~~~~~~l~~-----------------~~~i~~~~~~~~~--~~i--- 276 (434)
T 2db3_A 231 VTMRPEHQTLMFSATFPE------------EIQRMAGEFLKN-----------------YVFVAIGIVGGAC--SDV--- 276 (434)
T ss_dssp TTSCSSCEEEEEESCCCH------------HHHHHHHTTCSS-----------------CEEEEESSTTCCC--TTE---
T ss_pred CCCCCCCEEEEEECCCCH------------HHHHHHHHHCCC-----------------CEEEEECCCCCCC--CCC---
T ss_conf 578988569999556898------------999999986469-----------------8899953566666--653---
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66433100045799997586542110257999999999999999999998415779999999999956567899999875
Q 000379 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQS 353 (1604)
Q Consensus 274 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 353 (1604)
T Consensus 277 -------------------------------------------------------------------------------- 276 (434)
T 2db3_A 277 -------------------------------------------------------------------------------- 276 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHH
Q ss_conf 69999999999999830068510110024577211113699998899999999960999994899997117899999999
Q 000379 354 SLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERF 433 (1604)
Q Consensus 354 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~ 433 (1604)
. ..........|...|.+++.... .++||||+++..++.+++.
T Consensus 277 ----------------------~-----------~~~~~~~~~~k~~~l~~~l~~~~----~~~lVF~~t~~~a~~l~~~ 319 (434)
T 2db3_A 277 ----------------------K-----------QTIYEVNKYAKRSKLIEILSEQA----DGTIVFVETKRGADFLASF 319 (434)
T ss_dssp ----------------------E-----------EEEEECCGGGHHHHHHHHHHHCC----TTEEEECSSHHHHHHHHHH
T ss_pred ----------------------C-----------EEEEEECCHHHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHH
T ss_conf ----------------------3-----------69999371777999999998579----9879999471899999999
Q ss_pred HHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 74199999705999976788889899999999999971899309998044335657787428999078999779999763
Q 000379 434 VKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513 (1604)
Q Consensus 434 L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~~niLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~G 513 (1604)
|.. .++.+..+||. +++.+|.+++++|++|+.++||||+++++|||+|++++||+||+|.+...|+||.|
T Consensus 320 L~~----~~~~~~~lhg~------~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriG 389 (434)
T 2db3_A 320 LSE----KEFPTTSIHGD------RLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIG 389 (434)
T ss_dssp HHH----TTCCEEEESTT------SCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHT
T ss_pred HHH----CCCCEEEEECC------CCHHHHHHHHHHHHCCCCCEEEECHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHC
T ss_conf 986----79987998499------99999999999998599939998206457788324898999789999889999816
Q ss_pred HHCCCCC--EEEEEEECC-CHHHHHHHHHHHH
Q ss_conf 1113586--599998146-7999999999999
Q 000379 514 RARQHNS--QFILMLERG-NLKQRNKLFDIIR 542 (1604)
Q Consensus 514 RArR~gs--~~i~lv~~~-~~~~~~~l~~~~~ 542 (1604)
|++|.|. ..+.|+.++ +......+.+.++
T Consensus 390 R~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~ 421 (434)
T 2db3_A 390 RTGRVGNNGRATSFFDPEKDRAIAADLVKILE 421 (434)
T ss_dssp TSSCTTCCEEEEEEECTTTCGGGHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 06558998779999806421999999999999
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=337.61 Aligned_cols=333 Identities=19% Similarity=0.283 Sum_probs=245.6
Q ss_pred CCCCCCHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---
Q ss_conf 799990889999999613-6999990899739999999999999998607997099999268444999999998526---
Q 000379 42 INFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 42 ~~~~pR~yQ~e~l~~al~-~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~--- 117 (1604)
....|++||.++++.++. +++++.+|||+|||+++++++.+.+. ....+.+++|++|+++|+.||++.++.+.
T Consensus 59 ~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~---~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 135 (414)
T 3eiq_A 59 GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE---LDLKATQALVLAPTRELAQQIQKVVMALGDYM 135 (414)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCC---TTSCSCCEEEECSSHHHHHHHHHHHHHHGGGS
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEECHHHHHHHHHHHHHHHHCCC
T ss_conf 999999899998679857997899878998505999999999986---05786169999375999999999999984515
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 97189998788877302267887217993999849999999972276766443999937510038994999999998306
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
+..+..++|+.... .+.+.......+|+|+||+.|.+.+.++.+.+..+++||+||||++... .+...+...+...
T Consensus 136 ~~~~~~~~~~~~~~---~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~-~~~~~~~~~~~~~ 211 (414)
T 3eiq_A 136 GASCHACIGGTNVR---AEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKL 211 (414)
T ss_dssp CCCEEECCCCTTHH---HHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHT-TTHHHHHHHHTTS
T ss_pred CCEEEEEECCCCHH---HHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCC-CCHHHHHHHHHHC
T ss_conf 83399997896557---8999973699999998989999999759956303829999898886203-7399999999838
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHH-HHHCCCCEEECCCHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 99981999932478787878821189999999-96608934303632226110678611003435877664411345664
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISEL-ESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1604)
Q Consensus 198 ~~~prIlgLTATP~~~~~~~~~~~~~~~i~~L-e~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~ 276 (1604)
...+++++|||||... ...+ ...+. .|............ .. +
T Consensus 212 ~~~~~~i~~SAT~~~~------------~~~~~~~~~~-----------------~~~~~~~~~~~~~~--~~----~-- 254 (414)
T 3eiq_A 212 NSNTQVVLLSATMPSD------------VLEVTKKFMR-----------------DPIRILVKKEELTL--EG----I-- 254 (414)
T ss_dssp CTTCEEEEECSCCCHH------------HHHHHTTTCS-----------------SCEEECCCCCCCCT--TS----C--
T ss_pred CCCCEEEEEEEECCHH------------HHHHHHHHCC-----------------CCEEEEECCCCCCC--CC----C--
T ss_conf 8877699999836878------------9999998758-----------------97899924776688--98----0--
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33100045799997586542110257999999999999999999998415779999999999956567899999875699
Q 000379 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1604)
Q Consensus 277 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 356 (1604)
T Consensus 255 -------------------------------------------------------------------------------- 254 (414)
T 3eiq_A 255 -------------------------------------------------------------------------------- 254 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 99999999999830068510110024577211113699998899999999960999994899997117899999999741
Q 000379 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 436 (1604)
.. ..........|+..+.+++.... ..++||||+++..+..+++.|..
T Consensus 255 -------------------~~----------~~~~~~~~~~~~~~l~~~~~~~~---~~~~lvf~~~~~~~~~l~~~l~~ 302 (414)
T 3eiq_A 255 -------------------RQ----------FYINVEREEWKLDTLCDLYETLT---ITQAVIFINTRRKVDWLTEKMHA 302 (414)
T ss_dssp -------------------CE----------EEEECSSSTTHHHHHHHHHHSSC---CSSCEEECSCHHHHHHHHHHHHT
T ss_pred -------------------EE----------EEEEECHHHHHHHHHHHHHHHCC---CCCEEEEECCHHHHHHHHHHHHH
T ss_conf -------------------59----------99996768758999999998479---98289996878999999999986
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 99999705999976788889899999999999971899309998044335657787428999078999779999763111
Q 000379 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~~niLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRAr 516 (1604)
.++.+..+||. |+..+|.++++.|++|+.++||||+++++|+|+|++++||+||.|++..+|+||.|||+
T Consensus 303 ----~~~~~~~~h~~------~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~g 372 (414)
T 3eiq_A 303 ----RDFTVSAMHGD------MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 372 (414)
T ss_dssp ----TTCCCEEC---------CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-
T ss_pred ----CCCEEEEECCC------CCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCC
T ss_conf ----69708973477------99999999999997599939998883126978567888999679998888234157256
Q ss_pred CCCC--EEEEEEECCCHHHHHHHHHH
Q ss_conf 3586--59999814679999999999
Q 000379 517 QHNS--QFILMLERGNLKQRNKLFDI 540 (1604)
Q Consensus 517 R~gs--~~i~lv~~~~~~~~~~l~~~ 540 (1604)
|.|. .+++++...+....+.+++.
T Consensus 373 R~g~~g~~~~~~~~~~~~~~~~~~~~ 398 (414)
T 3eiq_A 373 RFGRKGVAINMVTEEDKRTLRDIETF 398 (414)
T ss_dssp ------CEEEEECSTHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 89897669999727789999999999
Done!