Your job contains 1 sequence.
>000380
MPDGESTVEGSQPSGGGTKICAATSAVVEECSVAVSGVGFGAESSVGAQKTDKDPKQIAR
KYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ
QAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELI
ALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSI
NSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQY
ISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIE
AEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFR
LQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKF
RSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGN
QRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRYC
SKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACLKAIE
DLHKLGALNDYLLPQEDNATEDEPMLFSSDSDSYEGEGSRGELHEMLVPAVLRQSWTKSQ
YPVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSGI
MQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPVIFHKNSVDWKIIRR
CLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKWFYLVTNIVFEK
NGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELE
EYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVS
AEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNN
SNLLKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAE
VRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNICISS
KSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLI
TSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYM
ITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQL
NPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIAS
QQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQ
GGSSCDIGSPSLTTGGLQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIV
EIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLEREGYLY
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000380
(1601 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2149259 - symbol:DCL4 "dicer-like 4" species:3... 4176 0. 2
UNIPROTKB|A7LFZ6 - symbol:DCL4 "Endoribonuclease Dicer ho... 3018 0. 3
TAIR|locus:2097705 - symbol:DCL2 "dicer-like 2" species:3... 1327 4.6e-198 2
UNIPROTKB|Q8LMR2 - symbol:DCL1 "Endoribonuclease Dicer ho... 754 5.2e-150 5
MGI|MGI:2177178 - symbol:Dicer1 "dicer 1, ribonuclease ty... 347 4.7e-97 6
UNIPROTKB|A0MQH0 - symbol:DICER1 "Endoribonuclease Dicer"... 341 1.1e-95 6
ZFIN|ZDB-GENE-030131-3445 - symbol:dicer1 "Dicer1, Dcr-1 ... 345 2.9e-95 6
UNIPROTKB|E9PU15 - symbol:Dicer1 "Protein Dicer1" species... 337 3.0e-95 6
UNIPROTKB|Q9UPY3 - symbol:DICER1 "Endoribonuclease Dicer"... 346 3.6e-95 6
UNIPROTKB|F1NJX0 - symbol:DICER1 "Endoribonuclease Dicer"... 338 5.5e-94 6
UNIPROTKB|Q25BN1 - symbol:DICER1 "Endoribonuclease Dicer"... 338 5.5e-94 6
UNIPROTKB|E2RIN4 - symbol:DICER1 "Uncharacterized protein... 340 6.9e-94 6
UNIPROTKB|B3DLA6 - symbol:dicer1 "Endoribonuclease Dicer"... 344 1.2e-93 6
UNIPROTKB|F1NP11 - symbol:DICER1 "Endoribonuclease Dicer"... 338 2.5e-92 6
UNIPROTKB|Q6TUI4 - symbol:DICER1 "Endoribonuclease Dicer"... 350 9.1e-92 6
UNIPROTKB|F1MCQ5 - symbol:DICER1 "Endoribonuclease Dicer"... 346 1.9e-91 6
POMBASE|SPCC188.13c - symbol:dcr1 "dicer" species:4896 "S... 359 1.6e-81 3
WB|WBGene00000939 - symbol:dcr-1 species:6239 "Caenorhabd... 470 1.8e-79 6
FB|FBgn0039016 - symbol:Dcr-1 "Dicer-1" species:7227 "Dro... 359 2.7e-74 7
FB|FBgn0034246 - symbol:Dcr-2 "Dicer-2" species:7227 "Dro... 284 2.1e-71 6
ASPGD|ASPL0000041548 - symbol:dclB species:162425 "Emeric... 292 6.1e-64 5
UNIPROTKB|I3L6Y9 - symbol:DICER1 "Uncharacterized protein... 316 5.3e-61 5
UNIPROTKB|A4RHU9 - symbol:DCL2 "Dicer-like protein 2" spe... 428 1.2e-56 5
UNIPROTKB|B3KRG4 - symbol:DICER1 "Endoribonuclease Dicer"... 346 2.4e-40 4
RGD|1309381 - symbol:Dicer1 "dicer 1, ribonuclease type I... 336 8.3e-34 2
ZFIN|ZDB-GENE-081104-438 - symbol:ifih1 "interferon induc... 275 3.7e-29 2
TAIR|locus:2092409 - symbol:RTL2 "RNAse THREE-like protei... 292 3.8e-29 3
DICTYBASE|DDB_G0294407 - symbol:helF "DEAD/DEAH box helic... 214 7.4e-28 2
UNIPROTKB|E1BJZ0 - symbol:IFIH1 "Uncharacterized protein"... 235 1.6e-26 3
MGI|MGI:2442858 - symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) bo... 233 3.3e-26 2
UNIPROTKB|I3LGW3 - symbol:DDX58 "Probable ATP-dependent R... 241 9.1e-26 2
UNIPROTKB|Q9GLV6 - symbol:DDX58 "Probable ATP-dependent R... 236 3.0e-25 2
UNIPROTKB|E2RMV6 - symbol:DDX58 "Uncharacterized protein"... 246 1.4e-24 2
MGI|MGI:1918836 - symbol:Ifih1 "interferon induced with h... 242 2.8e-24 3
UNIPROTKB|E2RNK0 - symbol:IFIH1 "Uncharacterized protein"... 231 3.5e-24 2
UNIPROTKB|D4AC08 - symbol:Ifih1 "Protein Ifih1" species:1... 240 9.8e-24 3
RGD|1560496 - symbol:Ifih1 "interferon induced with helic... 240 1.2e-23 3
UNIPROTKB|A2A376 - symbol:DDX58 "Probable ATP-dependent R... 221 1.8e-23 2
TAIR|locus:504955425 - symbol:RTL1 "RNAse II-like 1" spec... 283 2.7e-23 1
UNIPROTKB|B3KWW1 - symbol:DDX58 "cDNA FLJ44001 fis, clone... 221 3.0e-23 2
UNIPROTKB|O95786 - symbol:DDX58 "Probable ATP-dependent R... 221 3.8e-23 2
UNIPROTKB|F1NDV4 - symbol:IFIH1 "Uncharacterized protein"... 302 7.1e-23 1
DICTYBASE|DDB_G0280963 - symbol:rrpC "RNA-directed RNA po... 326 1.2e-22 2
UNIPROTKB|F1MKU1 - symbol:DDX58 "Uncharacterized protein"... 223 1.3e-22 2
UNIPROTKB|Q9BYX4 - symbol:IFIH1 "Interferon-induced helic... 228 4.7e-22 3
DICTYBASE|DDB_G0289659 - symbol:rrpA "RNA-directed RNA po... 327 7.7e-22 3
UNIPROTKB|E2QXT4 - symbol:DHX58 "Uncharacterized protein"... 286 3.7e-21 1
UNIPROTKB|F5H5W6 - symbol:DDX58 "Probable ATP-dependent R... 221 7.6e-21 2
UNIPROTKB|Q96C10 - symbol:DHX58 "Probable ATP-dependent R... 281 1.3e-20 1
ZFIN|ZDB-GENE-120612-3 - symbol:dhx58 "DEXH (Asp-Glu-X-Hi... 170 1.8e-20 2
RGD|1310093 - symbol:Dhx58 "DEXH (Asp-Glu-X-His) box poly... 206 2.7e-20 3
DICTYBASE|DDB_G0291249 - symbol:rrpB "RNA-directed RNA po... 190 3.3e-20 5
POMBASE|SPAC20H4.04 - symbol:fml2 "ATP-dependent 3' to 5'... 286 6.0e-20 2
UNIPROTKB|K7GMB7 - symbol:DHX58 "Uncharacterized protein"... 191 6.6e-20 2
MGI|MGI:1931560 - symbol:Dhx58 "DEXH (Asp-Glu-X-His) box ... 187 6.7e-20 2
UNIPROTKB|Q5E9G8 - symbol:LGP2 "Putative uncharacterized ... 274 7.5e-20 1
UNIPROTKB|F1S0P6 - symbol:DHX58 "Uncharacterized protein"... 191 1.1e-19 2
TAIR|locus:2153333 - symbol:RTL3 "RNAse THREE-like protei... 272 2.3e-19 1
WB|WBGene00008400 - symbol:drh-3 species:6239 "Caenorhabd... 169 2.0e-18 2
UNIPROTKB|I3LJY5 - symbol:LOC100737466 "Uncharacterized p... 237 2.1e-18 1
ASPGD|ASPL0000054215 - symbol:dclA species:162425 "Emeric... 237 7.7e-18 2
WB|WBGene00001090 - symbol:drh-1 species:6239 "Caenorhabd... 167 1.5e-17 2
UNIPROTKB|D4A8D9 - symbol:Ddx58 "Protein Ddx58" species:1... 231 3.6e-15 1
UNIPROTKB|D4ADT5 - symbol:Ddx58 "Protein Ddx58" species:1... 228 5.5e-15 1
RGD|1309460 - symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box po... 231 5.6e-15 1
TAIR|locus:2126111 - symbol:AT4G00420 species:3702 "Arabi... 165 9.8e-15 2
DICTYBASE|DDB_G0268410 - symbol:drnB "putative RNase III"... 197 1.7e-14 3
TAIR|locus:2198898 - symbol:RTL1 "RNAse THREE-like protei... 175 2.5e-14 2
CGD|CAL0005976 - symbol:MPH1 species:5476 "Candida albica... 153 7.0e-14 3
ASPGD|ASPL0000062874 - symbol:AN10063 species:162425 "Eme... 143 7.9e-14 2
DICTYBASE|DDB_G0274841 - symbol:fncM "ATP-dependent DNA h... 172 1.2e-13 3
POMBASE|SPAC9.05 - symbol:fml1 "ATP-dependent 3' to 5' DN... 153 1.6e-13 3
UNIPROTKB|G3MWK8 - symbol:DHX58 "Uncharacterized protein"... 212 1.8e-13 1
UNIPROTKB|F1SI11 - symbol:FANCM "Uncharacterized protein"... 153 3.4e-13 3
UNIPROTKB|A4RN08 - symbol:MPH1 "ATP-dependent DNA helicas... 156 8.8e-13 3
TIGR_CMR|CJE_1807 - symbol:CJE_1807 "ribonuclease III" sp... 153 1.0e-11 3
UNIPROTKB|I3LAY7 - symbol:FANCM "Uncharacterized protein"... 134 3.1e-11 3
FB|FBgn0038889 - symbol:CG7922 species:7227 "Drosophila m... 156 3.2e-11 3
TIGR_CMR|NSE_0918 - symbol:NSE_0918 "ribonuclease III" sp... 151 3.5e-11 2
TIGR_CMR|CPS_4122 - symbol:CPS_4122 "ribonuclease III" sp... 147 1.2e-10 2
TIGR_CMR|DET_1025 - symbol:DET_1025 "ribonuclease III" sp... 164 1.2e-10 2
UNIPROTKB|F1PJL5 - symbol:DROSHA "Uncharacterized protein... 141 2.0e-10 3
TIGR_CMR|BA_3987 - symbol:BA_3987 "ribonuclease III" spec... 136 2.1e-10 2
MGI|MGI:2442306 - symbol:Fancm "Fanconi anemia, complemen... 145 3.0e-10 3
FB|FBgn0026722 - symbol:drosha "drosha" species:7227 "Dro... 156 3.6e-10 3
SGD|S000001441 - symbol:MPH1 "3'-5' DNA helicase involved... 132 3.7e-10 2
UNIPROTKB|P0A7Y0 - symbol:rnc "RNase III" species:83333 "... 136 4.1e-10 2
UNIPROTKB|F1NQC9 - symbol:DROSHA "Uncharacterized protein... 146 6.2e-10 3
UNIPROTKB|E2RNF7 - symbol:FANCM "Uncharacterized protein"... 142 6.3e-10 3
UNIPROTKB|J9P777 - symbol:FANCM "Uncharacterized protein"... 142 6.3e-10 3
DICTYBASE|DDB_G0274077 - symbol:drnA-2 "putative RNAse II... 128 8.2e-10 5
DICTYBASE|DDB_G0273051 - symbol:drnA-1 "putative RNAse II... 128 8.2e-10 5
UNIPROTKB|Q8IYD8 - symbol:FANCM "Fanconi anemia group M p... 142 9.8e-10 5
UNIPROTKB|F1LQY5 - symbol:F1LQY5 "Uncharacterized protein... 141 1.3e-09 3
MGI|MGI:1261425 - symbol:Drosha "drosha, ribonuclease typ... 141 1.7e-09 4
UNIPROTKB|F1SP38 - symbol:DROSHA "Uncharacterized protein... 141 3.2e-09 3
UNIPROTKB|E1BGY0 - symbol:DROSHA "Uncharacterized protein... 141 3.5e-09 3
UNIPROTKB|E9PTR3 - symbol:E9PTR3 "Uncharacterized protein... 141 3.5e-09 3
UNIPROTKB|Q9NRR4 - symbol:DROSHA "Ribonuclease 3" species... 141 3.5e-09 3
UNIPROTKB|Q61XX9 - symbol:drsh-1 "Ribonuclease 3" species... 147 3.6e-09 3
WARNING: Descriptions of 161 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2149259 [details] [associations]
symbol:DCL4 "dicer-like 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006396
"RNA processing" evidence=ISS;RCA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010050 "vegetative phase change"
evidence=RCA;IMP] [GO:0010267 "production of ta-siRNAs involved in
RNA interference" evidence=RCA;IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA;IMP] [GO:0051607
"defense response to virus" evidence=RCA;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IGI;RCA] [GO:0009616 "virus induced gene silencing"
evidence=IGI;RCA] [GO:0010599 "production of lsiRNA involved in RNA
interference" evidence=IMP] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IMP] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00035 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170
Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358
SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010599 GO:GO:0010267 GO:GO:0010050 EMBL:AF296825
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0010216 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ118423 IPI:IPI00521227
RefSeq:NP_197532.3 UniGene:At.31201 PDB:2KOU PDBsum:2KOU
ProteinModelPortal:P84634 SMR:P84634 MINT:MINT-6948367
STRING:P84634 PaxDb:P84634 PRIDE:P84634 EnsemblPlants:AT5G20320.1
GeneID:832154 KEGG:ath:AT5G20320 TAIR:At5g20320
HOGENOM:HOG000083706 InParanoid:P84634 OMA:RNLLHNR PhylomeDB:P84634
ProtClustDB:CLSN2702253 EvolutionaryTrace:P84634
Genevestigator:P84634 GO:GO:0006353 GO:GO:0009616 Uniprot:P84634
Length = 1702
Score = 4176 (1475.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 849/1502 (56%), Positives = 1061/1502 (70%)
Query: 24 TSXXXXXXXXXXXXXXFGAESSVG-AQKTDKDPKQIARKYQLELCKKAMEENIIVYLGTG 82
TS F A + + K +KDP++IAR+YQ+ELCKKA EEN+IVYLGTG
Sbjct: 88 TSSSSVSSFSSSSSSLFSAAGTDDPSPKMEKDPRKIARRYQVELCKKATEENVIVYLGTG 147
Query: 83 CGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKR 142
CGKTHIAV+LIYEL HL+ P+KS+CIFLAPTVALV+QQAKVI +S+ FKV CGG +
Sbjct: 148 CGKTHIAVMLIYELGHLVLSPKKSVCIFLAPTVALVEQQAKVIADSVNFKVAIHCGGKRI 207
Query: 143 LKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKI 202
+KSH +WE+EI EVLVM PQILL+ L H FIKME I+LLIFDECHHAQ +SNHPYA+I
Sbjct: 208 VKSHSEWEREIAANEVLVMTPQILLHNLQHCFIKMECISLLIFDECHHAQQQSNHPYAEI 267
Query: 203 MKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLES 262
MK FYK + ++ PRIFGMTASPVVGKG+ NL KSINSLENLL+AKVYSVE L+
Sbjct: 268 MKVFYKSESLQRPRIFGMTASPVVGKGSFQSENLSKSINSLENLLNAKVYSVESNVQLDG 327
Query: 263 FVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISA-LSRKLHDHQSLRNTTKQL 321
FVSSP+V+VY Y ++D S S + L +IK+ S L H Q+L + + L
Sbjct: 328 FVSSPLVKVYYYRSALSDASQSTIRYENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLL 387
Query: 322 NRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLC-RFASQASEV 380
R HD++ + L NLG+ GA+ A+ I L+ D +++E + G +C + S A+E
Sbjct: 388 KRSHDNLIYTLLNLGLWGAIQAAKIQLNSDHNVQDEPV---GKNPKSKICDTYLSMAAEA 444
Query: 381 FAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARAL 440
++ +D ASDL + LKEP FS+KL++LI ILS FRL+ HMKCI+FVNRIVTAR L
Sbjct: 445 LSSGVAKDENASDLLSLAALKEPLFSRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTL 504
Query: 441 SYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDI 500
S IL NL+ L SW+ FLVG+++GLKSMSR +M++IL++F+S ELNLLVATKVGEEGLDI
Sbjct: 505 SCILNNLELLRSWKSDFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDI 564
Query: 501 QTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNRE 560
QTCCLVIR+DLPETV SFIQSRGRARMPQSEYAFLVDSGN++E+DLI+NF EDRMN E
Sbjct: 565 QTCCLVIRYDLPETVTSFIQSRGRARMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLE 624
Query: 561 IMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYY--F 618
I R+S + +E +YKV +GACIS G +SLL++YCS+LPHDEFF PKP+F +
Sbjct: 625 ITYRSSEETCPRLDEELYKVHETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPV 684
Query: 619 DDLGGTICHIILPANAPIHQIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDN 678
D+ GGTIC I LPANAPI +I + S EAAKKDACLKA+ +LH LG LND+LLP +
Sbjct: 685 DEFGGTICRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKD 744
Query: 679 ATEDEPMLFXXXXXXXXXXX-XXXXLHEMLVPAVLRQSWTKSQYPVRLNFYFMQFIPDPA 737
EDE L+EM VP + +Q W S V L+ Y++ F+P PA
Sbjct: 745 EIEDELSDDEFDFDNIKGEGCSRGDLYEMRVPVLFKQKWDPSTSCVNLHSYYIMFVPHPA 804
Query: 738 DRIYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSGIMQ--------AQQFQEM 789
DRIY++FG F+KS LP EAE + +DLHLA RSV K+ PSG+ + A+ FQE+
Sbjct: 805 DRIYKKFGFFMKSPLPVEAETMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEI 864
Query: 790 FLKVILDRSEFNSEFVPLGKDDYCESSSSTFYLLLPVIFHKN----SVDWKIIRRCLSSP 845
LKV+ +R E +FVPL D +S STFYLLLP+ H SVDW IR CLSSP
Sbjct: 865 ALKVLFERGELIPDFVPLELQDSSRTSKSTFYLLLPLCLHDGESVISVDWVTIRNCLSSP 924
Query: 846 VFGTPGGSVDRKSLPSHGPLQLHNG-WSSESDVENSLVYATHKKWFYLVTNIVFEKNGYS 904
+F TP V+ PS L+L NG W+ + DV+NSLV+ T+ K FY V +I +NG+S
Sbjct: 925 IFKTPSVLVEDIFPPSGSHLKLANGCWNID-DVKNSLVFTTYSKQFYFVADICHGRNGFS 983
Query: 905 PYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFD 964
P K+S + SHV+ + YG+ LKHP QPLLR KPL +RNLLHNR + E EL+EYF
Sbjct: 984 PVKESSTKSHVESIYKLYGVELKHPAQPLLRVKPLCHVRNLLHNRMQTNLEPQELDEYFI 1043
Query: 965 DLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEML 1024
++PPEL LKI G SKDIGSSLSLLPSIMHR+ENLLVAIELKH+LSAS PE AEVS +
Sbjct: 1044 EIPPELSHLKIKGLSKDIGSSLSLLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRV 1103
Query: 1025 LKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLL 1084
L+ALTTEKC ER SLERLE+LGDAFLK+AV RHLFL HD++DEGELTRRRSN VNNSNL
Sbjct: 1104 LEALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLC 1163
Query: 1085 KLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHS-QYDGRAPDDLNAEVRC 1143
+LA + NLQVYIRDQ DP QFFA G C C + + +HS D + E+RC
Sbjct: 1164 RLAIKKNLQVYIRDQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIRC 1223
Query: 1144 SKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNICISSKSF 1203
SKGHHWL+KKTIADVVEALVGAF+ DSGFK A FLKWIG+ V+FE+ QV + CI+S+ +
Sbjct: 1224 SKGHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQDACIASRRY 1283
Query: 1204 LPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGG-CYQRLEFLGDAVLDYLITS 1262
LPL+ ++ TLE L ++FLH+GLL+QAF+HPS+NR GG CYQRLEFLGDAVLDYL+TS
Sbjct: 1284 LPLTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTS 1343
Query: 1263 YLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMIT 1322
Y ++V+PKLKPGQLTDLRS+ VNN+A ANVAV S +FL +S L E I +Y +++ +
Sbjct: 1344 YFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLAS 1403
Query: 1323 PSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNP 1382
EGPRCPKVLGDLVES LGA+ LD GFNLN VW +MLSFLDP+ SNLQ++P
Sbjct: 1404 SPLASGQSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISP 1463
Query: 1383 IRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQ 1442
I+EL+ELC SY D + + KK G F E KVT + +SA N ++E + A+Q
Sbjct: 1464 IKELIELCQSYKWDREISATKKDGAFTVELKVTKNGCCLTVSATGRN--KREGTKKAAQL 1521
Query: 1443 LFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQGG 1502
+ + LKA + + LE +LK+ ++EA+LIGY+E PI+VV E L I E GG
Sbjct: 1522 MITNLKAHENITTSHPLEDVLKNGIRNEAKLIGYNEDPIDVVDLVGLDVENLNILETFGG 1581
Query: 1503 SS 1504
+S
Sbjct: 1582 NS 1583
Score = 242 (90.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 60/182 (32%), Positives = 87/182 (47%)
Query: 1428 TNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPINVVAAD 1487
TNL E I S L LK G + K + P L+G D +N++
Sbjct: 1524 TNLKAHENIT-TSHPLEDVLKN-GIRNEAKLIG--YNEDPIDVVDLVGLDVENLNILETF 1579
Query: 1488 DNVFEK-----LKISEPQGGSSCDIGSPS---LTTGGLQNRSARSRLYELCAANCWKPPT 1539
E+ ++ PQ S + P + GG +++A+S L+E C ANCWKPP
Sbjct: 1580 GGNSERSSSYVIRRGLPQAPSKTEDRLPQKAIIKAGGPSSKTAKSLLHETCVANCWKPPH 1639
Query: 1540 FDCCKEEGLSHLKLFTFRVIVEIE-APEKIIECIGEPQXXXXXXXXXXXXXMLWCLEREG 1598
F+CC+EEG HLK F ++VI+E+E AP +EC GE + +WCL+ G
Sbjct: 1640 FECCEEEGPGHLKSFVYKVILEVEDAPNMTLECYGEARATKKGAAEHAAQAAIWCLKHSG 1699
Query: 1599 YL 1600
+L
Sbjct: 1700 FL 1701
Score = 53 (23.7 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 731 QFIPDPADRIYREFGLFVKSLLPGEAEHLKV--DLHLARGRSV 771
+F+P P Y E G ++SL + +H V DLHL SV
Sbjct: 54 KFLPPPLTMPYSEIGDDLRSL---DFDHADVSSDLHLTSSSSV 93
>UNIPROTKB|A7LFZ6 [details] [associations]
symbol:DCL4 "Endoribonuclease Dicer homolog 4"
species:39947 "Oryza sativa Japonica Group" [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=IMP] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IDA] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IMP] [GO:0048608 "reproductive structure
development" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010492 GO:GO:0010267 EMBL:AL606607 EMBL:AP008210
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009944
GO:GO:0008026 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000083706
EMBL:EU009924 EMBL:AB353922 EMBL:AK066586 RefSeq:NP_001053278.1
UniGene:Os.27988 GeneID:4336362 KEGG:osa:4336362 Gramene:A7LFZ6
ProtClustDB:CLSN2694920 GO:GO:0048608 Uniprot:A7LFZ6
Length = 1657
Score = 3018 (1067.4 bits), Expect = 0., Sum P(3) = 0.
Identities = 651/1286 (50%), Positives = 848/1286 (65%)
Query: 228 KGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVT 287
KG S + N K INSLE LL AKV SV D E+LES V+SP + VY YGPV N ++ + +
Sbjct: 226 KGGSNKLNYTKCINSLEELLHAKVCSV-DNEELESVVASPDMEVYFYGPV-NHSNLTTI- 282
Query: 288 CSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYIL 347
C ++L +K + L L D + + K L RLH+++ FCL+ LG GAL A+
Sbjct: 283 CIKELDSLKLQSE-RMLRASLCDFKDSQKKLKSLWRLHENIIFCLQELGSFGALQAARTF 341
Query: 348 LS--GDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFF 405
LS GD+ R E ++ G+T + + A+ + + + DG + +E L+EPFF
Sbjct: 342 LSFDGDKLDRRE-VDLNGST-SSFAHHYLNGATSILSRN-KTDGSHAGSFDLEKLEEPFF 398
Query: 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGL 465
S K LI +LS + LQ++MKCIVFV RI ARA+S ILQNLK L W+C FLVG ++G
Sbjct: 399 SNKFSVLINVLSRYGLQENMKCIVFVKRITVARAISNILQNLKCLEFWKCEFLVGCHSGS 458
Query: 466 KSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525
K+MSRN M +I+++F SGE+NLLVAT VGEEGLDIQTCCLV+RFDLPETVASFIQSRGRA
Sbjct: 459 KNMSRNKMDAIVQRFSSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRA 518
Query: 526 RMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGA 585
RM +S+Y L++ NQ L+ + E MN EI RTS+D F C EE IY+VD++GA
Sbjct: 519 RMTKSKYVVLLERENQSHEKLLNGYIAGESIMNEEIDSRTSNDMFDCLEENIYQVDNTGA 578
Query: 586 CISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQIVGTPQS 645
IS VSLLH YC LP D FF P P F+Y D + G IC +ILP NA Q G P
Sbjct: 579 SISTACSVSLLHCYCDNLPRDMFFTPSPVFFYIDGIEGIICRLILPPNAAFRQADGQPCL 638
Query: 646 SMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEPMLFXXXXXXXXXXXXXXXLHE 705
S + AK+DACLKA LHKLGAL D+LLP + + LHE
Sbjct: 639 SKDEAKRDACLKACVKLHKLGALTDFLLPGPGSRKNKVSVTNNSSNNKVEDDSLREELHE 698
Query: 706 MLVPAVLRQSWTKSQYPVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHL 765
ML+PAVL+ S K L+FY+++FIP P DR Y+ FGLFV + LP EAE L+VDLHL
Sbjct: 699 MLIPAVLKPSGLKLDSLSNLHFYYVKFIPIPEDRRYQMFGLFVINPLPVEAETLQVDLHL 758
Query: 766 ARGRSVMTKLVPSG--------IMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYCESSS 817
ARGR V + G +M A +FQEM LK++LDRSEF S V LG D E +S
Sbjct: 759 ARGRIVKAGIKHLGKIAFEKEKMMLAHKFQEMCLKILLDRSEFTSPHVKLGNDVTLEINS 818
Query: 818 STFYLLLPV----IFHKNSVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSS 873
TFYLLLP+ + +DW + RCLSSP+F P S S+ L+L +G S
Sbjct: 819 -TFYLLLPIKQKCYGDRFMIDWPAVERCLSSPIFKDPIDVSVHASYSSNESLRLLDGIFS 877
Query: 874 ESDVENSLVYATHKKWFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPL 933
++DV S+V++ H F+ V I+ E N +S + +++ +H + I L HP+QPL
Sbjct: 878 KTDVVGSVVFSPHNNIFFFVDGILDEINAWSEHS---GATYAEHFKERFRIELSHPEQPL 934
Query: 934 LRAKPLFRLRNLLHNRKLE--DSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLSLLPS 991
L+AK +F LRNLLHNR E +SE EL E+F +LPPELC LK+IGFSKD+GSSLSLLPS
Sbjct: 935 LKAKQIFNLRNLLHNRLPETTESEGRELLEHFVELPPELCSLKVIGFSKDMGSSLSLLPS 994
Query: 992 IMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLK 1051
+M+RLENLLVAIELK ++ +SFPE +++SA +L+ALTTEKC ER SLER E+LGDAFLK
Sbjct: 995 LMYRLENLLVAIELKDVMLSSFPEASQISASGILEALTTEKCLERISLERFEVLGDAFLK 1054
Query: 1052 YAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALGR 1111
Y VGRH F+ ++ +DEG+LTRRRS+ VNNS+L +L+ R LQVYIRDQ F+P QFFA GR
Sbjct: 1055 YVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQQFEPTQFFAPGR 1114
Query: 1112 RCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSG 1171
C +C+ + E +H Q D + N +RC++ HHWLH+K IADVVE+L+GAF+ + G
Sbjct: 1115 PCKVVCNTDVEVRLH-QMDIHPDNRENCNLRCTRSHHWLHRKVIADVVESLIGAFLVEGG 1173
Query: 1172 FKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQ 1231
FKAA AFL WIGI V+F + + SS L L D+A LE L+G++F H+GLLLQ
Sbjct: 1174 FKAAFAFLHWIGIDVDFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQ 1233
Query: 1232 AFVHPSFNR-LGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFA 1290
AFVHPSF++ GGCYQRLEFLGDAVL+Y+ITSYLYS YP +KPGQ+TDLRS+ V N + A
Sbjct: 1234 AFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLA 1293
Query: 1291 NVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAI 1350
AV++S +K LI DSN L+ I+ + Y+ +S +++ E P CPK LGD+VES +GA+
Sbjct: 1294 YAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALGDIVESCIGAV 1353
Query: 1351 LLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPS-LKKGGKFL 1409
LLDSGFNLN VWK+ML L P+L F+N+ NP+REL ELC + +L P +K G++
Sbjct: 1354 LLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMKADGEYH 1413
Query: 1410 AEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKS 1469
+ +V K K I A N + K A + A+Q+ SKLK GY + KSLE IL + K
Sbjct: 1414 VKVEVNIKSK--IIICTAANRNSKAARKFAAQETLSKLKNYGYKHRNKSLEEILIVARKR 1471
Query: 1470 EARLIGYDETPINVVAADDNVFEKLK 1495
E+ LIGY+E PI+V AD +V K+K
Sbjct: 1472 ESELIGYNEDPIDV-EADISV--KMK 1494
Score = 634 (228.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 121/192 (63%), Positives = 147/192 (76%)
Query: 42 AESSVGAQKT---DKDPKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAH 98
A ++ G T KDP+ IARKYQL+LCK+A+EENIIVYLGTGCGKTHIAVLLIYEL H
Sbjct: 10 AAAAAGPSSTRGEPKDPRTIARKYQLDLCKRAVEENIIVYLGTGCGKTHIAVLLIYELGH 69
Query: 99 LIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEV 158
LIRKP + +CIFLAPT+ LV+QQA VI S FKV+ + G K + H +WE ++ ++EV
Sbjct: 70 LIRKPSREVCIFLAPTIPLVRQQAVVIASSTDFKVQCYYGNGKNSRDHQEWENDMREFEV 129
Query: 159 LVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPD-IMKVPRI 217
LVM PQILL L H FIKM IALLI DECHHAQ + HPYA+IMK+FY + + K PR+
Sbjct: 130 LVMTPQILLQSLRHCFIKMNSIALLILDECHHAQPQKRHPYAQIMKEFYNSNSVEKFPRV 189
Query: 218 FGMTASPVVGKG 229
FGMTASP++GKG
Sbjct: 190 FGMTASPIIGKG 201
Score = 206 (77.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 39/87 (44%), Positives = 56/87 (64%)
Query: 1515 GGLQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIE-APEKIIECIG 1573
G + +++ARS L+ELCAAN WKPP F CKEEG SHL+ FT++V+VEI+ A ++EC
Sbjct: 1563 GDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHS 1622
Query: 1574 EPQXXXXXXXXXXXXXMLWCLEREGYL 1600
+ + LWCL++ G+L
Sbjct: 1623 DGKLQKKAAQEHAAQGALWCLKQLGHL 1649
Score = 48 (22.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 23/82 (28%), Positives = 36/82 (43%)
Query: 1386 LLELCNS-YDLDLQFPSLKKGG-----KFLAEAKVTGKDKDVFISACATN--LSRKEAIR 1437
L ELC + Y +F K+ G KF + V K + C ++ L +K A
Sbjct: 1574 LFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKKAAQE 1633
Query: 1438 IASQQLFSKLKAAGYVPKTKSL 1459
A+Q LK G++PK + +
Sbjct: 1634 HAAQGALWCLKQLGHLPKEEDV 1655
Score = 39 (18.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 310 DHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDE 352
DHQ N ++ L + + L++L C S LL DE
Sbjct: 116 DHQEWENDMREFEVLVMTPQILLQSLRHCFIKMNSIALLILDE 158
Score = 37 (18.1 bits), Expect = 7.8e-72, Sum P(3) = 7.8e-72
Identities = 10/62 (16%), Positives = 21/62 (33%)
Query: 906 YKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDD 965
Y + D + H+ P + F + HN+ + S H++ ++
Sbjct: 1478 YNEDPIDVEADISVKMKSPHIHEENIPFQNTETSFTRSSKFHNQIIAGSGKHDVNNGRNN 1537
Query: 966 LP 967
P
Sbjct: 1538 QP 1539
>TAIR|locus:2097705 [details] [associations]
symbol:DCL2 "dicer-like 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010216 "maintenance of DNA methylation"
evidence=IMP] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA;IMP] [GO:0051607 "defense response to
virus" evidence=RCA;IMP] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=IGI;RCA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA] [GO:0010073
"meristem maintenance" evidence=RCA] [GO:0016569 "covalent
chromatin modification" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0051607 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0010267 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC012328 GO:GO:0010216 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ479970
EMBL:DQ479971 IPI:IPI00530074 IPI:IPI00852241 RefSeq:NP_001078101.1
RefSeq:NP_001189798.1 RefSeq:NP_566199.4 UniGene:At.43488
ProteinModelPortal:Q3EBC8 SMR:Q3EBC8 IntAct:Q3EBC8 STRING:Q3EBC8
PaxDb:Q3EBC8 PRIDE:Q3EBC8 EnsemblPlants:AT3G03300.1
EnsemblPlants:AT3G03300.3 GeneID:821300 KEGG:ath:AT3G03300
TAIR:At3g03300 HOGENOM:HOG000006099 InParanoid:Q3EBC8 OMA:TAIVLES
PhylomeDB:Q3EBC8 ProtClustDB:CLSN2694055 Genevestigator:Q3EBC8
Uniprot:Q3EBC8
Length = 1388
Score = 1327 (472.2 bits), Expect = 4.6e-198, Sum P(2) = 4.6e-198
Identities = 352/1078 (32%), Positives = 570/1078 (52%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
P AR YQ+E +KA+++N IV+L TG GKT IA++L+ A+L RKP C+FL P
Sbjct: 20 PLHFARSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYLFRKPSPCFCVFLVPQ 79
Query: 115 VALVQQQAKVIEESIGFKVRTFCGG-SKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
V LV QQA+ ++ KV + G W++E+D+YEVLVM P ILL L H
Sbjct: 80 VVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDALRHS 139
Query: 174 FIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI----MKVPRIFGMTASPVVGKG 229
F+ + +I +LI DECHHA K HPYA IM++FY ++ VPRIFGMTAS V KG
Sbjct: 140 FLSLSMIKVLIVDECHHAGGK--HPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKG 197
Query: 230 ASAQANLPKSINSLENLLDAKVYSVEDAEDLESFV--SSPVVRVYQYGPVINDTSSSYVT 287
+ + K I+ LE L+++KVY+ E+ L FV S+P + YQ+ + + +S V
Sbjct: 198 ENLDSYW-KKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRASLVE 256
Query: 288 CSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYIL 347
E+L IK + L + ++ + K+L R+ ++ +CL++LG+ A A+ L
Sbjct: 257 KLERLT-IKHRLSLGTLDL---NSSTVDSVEKRLLRISSTLTYCLDDLGILLAQKAAQSL 312
Query: 348 LSGDETMRNELIEAEGNTIDDSLCR-FASQASEVFAAICRRDGIASDLSCIEVLKEP-FF 405
+ + + + E N +L + F S AS+ F A + G+ ++ I E
Sbjct: 313 SA---SQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQ-GLNWSVANINGNAEAGLL 368
Query: 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQN-LKFLASWRCHFLVGVNAG 464
+ K + LI L + ++++CI+FV+R++TA L +L L +W+ ++ G N+G
Sbjct: 369 TLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNNWKTKYVAGNNSG 428
Query: 465 LKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR 524
L++ +R I+E FR G +N++VAT + EEGLD+Q+C LVIRFD + SFIQSRGR
Sbjct: 429 LQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGR 488
Query: 525 ARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTC---SEERIYKVD 581
ARM S+Y +V+SG+ + + RM E +D + S+E +++V+
Sbjct: 489 ARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHSLVPCPPLPDDSDEPLFRVE 548
Query: 582 SSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAPIHQIVG 641
S+GA ++ VSL++ YCS+LP DE+F P P+F D G C + LP + P+ ++
Sbjct: 549 STGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGS--CTLYLPKSCPVKEVKA 606
Query: 642 TPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEPMLFXXXXXXXXXXXXXX 701
+++ + K+ CLKA LHK+GAL+D+L+P M+
Sbjct: 607 --EANNKVLKQAVCLKACIQLHKVGALSDHLVPD---------MVVAETVSQKLEKIQYN 655
Query: 702 XLHEMLVPAVLRQSWTKSQYPVRLNFYFMQFIPD-PADRIYREFGLFVKSLLPGEAEHLK 760
P L ++ +Q +FY ++ P+ P + + L + +L + +
Sbjct: 656 TEQPCYFPPELVSQFS-AQPETTYHFYLIRMKPNSPRNFHLNDVLLGTRVVLEDDIGNTS 714
Query: 761 VDLHLARGRSVMT-------KLVPSGIMQAQQFQEMFLKVILDRSEFNSEFVPLGKDDYC 813
L RG +T L ++ ++FQ +V+LD S N G +
Sbjct: 715 FRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLLDHSVENLMEALNGL--HL 772
Query: 814 ESSSSTFYLLLPVIF-HKNS-VDWKIIRRCLSSPVFGTPGGSVDR-KSLPSHGPLQ-LH- 868
+ YLL+P H+ S +DW++IR V T +++ ++ ++G + LH
Sbjct: 773 RDGVALDYLLVPSTHSHETSLIDWEVIRS-----VNLTSHEVLEKHENCSTNGASRILHT 827
Query: 869 -NGWSSESDVENSLVYATHKKWFYLVTNIVFEKNGYS--PYKDSDSSSHVDHLISSYGIH 925
+G V+N+LVY H + Y ++ NG S ++S +++++ +GI
Sbjct: 828 KDGLFCTCVVQNALVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGDQTYIEYYEERHGIQ 887
Query: 926 LKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSS 985
L +PLL + +F L + LH K + + H+ E F +LPPELC + + S D+ S
Sbjct: 888 LNFVDEPLLNGRHIFTLHSYLHMAKKKKEKEHDRE--FVELPPELCHVILSPISVDMIYS 945
Query: 986 LSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEIL 1045
+ +PS+M R+E+LL+A LK S P+ + +L+A+TT+KC+++F LE LE L
Sbjct: 946 YTFIPSVMQRIESLLIAYNLKK----SIPK-VNIPTIKVLEAITTKKCEDQFHLESLETL 1000
Query: 1046 GDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDP 1103
GD+FLKYAV + LF T EG L+ ++ ++N L + + LQ +IRD+ F+P
Sbjct: 1001 GDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEP 1058
Score = 613 (220.8 bits), Expect = 4.6e-198, Sum P(2) = 4.6e-198
Identities = 151/429 (35%), Positives = 239/429 (55%)
Query: 1024 LLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNL 1083
+L+A+TT+KC+++F LE LE LGD+FLKYAV + LF T EG L+ ++ ++N L
Sbjct: 979 VLEAITTKKCEDQFHLESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVML 1038
Query: 1084 LKLAARNNLQVYIRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRC 1143
+ + LQ +IRD+ F+P + G+ +S + P+ N V
Sbjct: 1039 CQFGCQQKLQGFIRDECFEPKGWMVPGQ----------SSAAYSLVNDTLPESRNIYVAS 1088
Query: 1144 SKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNICISSKSF 1203
+ L +K++ADVVE+L+GA++ + G AA F+ W+GI+V+F ++ I S
Sbjct: 1089 RRN---LKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTTK-----IQRDSP 1140
Query: 1204 LPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSFN--RLGGCYQRLEFLGDAVLDYLIT 1261
+ +++ +E LL + F + LL++A H S+ + CYQRLEFLGD+VLDYLIT
Sbjct: 1141 IQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLIT 1200
Query: 1262 SYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMI 1321
+LY YP L PG LTD+RS VNN+ +A VAV + +K +++ S+ L + I+ V
Sbjct: 1201 KHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFE 1260
Query: 1322 TPS--STREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQ 1379
S ST + PKVLGD++ES GAI +DSG+N V+ + L ++ ++
Sbjct: 1261 QSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVK 1320
Query: 1380 LNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIA 1439
L+P+REL ELC + +L K F E K K++ + A +K A ++A
Sbjct: 1321 LHPVRELTELCQKWQFELS--KAKDFDSFTVEVKA----KEMSFAHTAKASDKKMAKKLA 1374
Query: 1440 SQQLFSKLK 1448
+++ + LK
Sbjct: 1375 YKEVLNLLK 1383
>UNIPROTKB|Q8LMR2 [details] [associations]
symbol:DCL1 "Endoribonuclease Dicer homolog 1"
species:39947 "Oryza sativa Japonica Group" [GO:0007275
"multicellular organismal development" evidence=IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
Pfam:PF00035 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 Gene3D:3.30.160.20
EMBL:DP000009 EMBL:AP008209 GO:GO:0003725 GO:GO:0090305
GO:GO:0004386 SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000140 EMBL:AC105363 RefSeq:NP_001048796.2
UniGene:Os.13488 HSSP:P66666 ProteinModelPortal:Q8LMR2 PRIDE:Q8LMR2
EnsemblPlants:LOC_Os03g02970.1 GeneID:4331440
KEGG:dosa:Os03t0121800-00 KEGG:dosa:Os03t0121901-00
KEGG:osa:4331440 Gramene:Q8LMR2 eggNOG:COG1111 HOGENOM:HOG000239675
KO:K11592 OMA:ITHASRP GO:GO:0004525 GO:GO:0035196
Gene3D:1.10.1520.10 SUPFAM:SSF69065 Uniprot:Q8LMR2
Length = 1883
Score = 754 (270.5 bits), Expect = 5.2e-150, Sum P(5) = 5.2e-150
Identities = 213/579 (36%), Positives = 309/579 (53%)
Query: 900 KNGY-SPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL-----HNRKLED 953
K GY P + SS+ D+ YG+ L + KQPL+RA+ + +NLL H+ E
Sbjct: 1217 KEGYLGPL---EYSSYADYYKQKYGVELIYRKQPLIRARGVSYCKNLLSPRFEHSDAREG 1273
Query: 954 SESHELEE-YFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSAS 1012
S L++ Y+ LPPELC + + S G+ LPSIM R+E++L+A++LK ++
Sbjct: 1274 DFSENLDKTYYVYLPPELCLVHPLPGSLVRGAQR--LPSIMRRVESMLLAVQLKDIID-- 1329
Query: 1013 FPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTR 1072
+P V A +L+ALT CQE ER E+LGDA+LK+ V R LFL + EG+LTR
Sbjct: 1330 YP----VPATKILEALTAASCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTR 1385
Query: 1073 RRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQFFALG---------RRC-PRICSKE-T 1121
R V+N L + A LQ YI+ F P ++ A G R P I +E T
Sbjct: 1386 MRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDEEST 1445
Query: 1122 ERTIHSQ-YDGRAPDDL--NAEVRC-SKGHHWLHKKTIADVVEALVGAFIDDSGFKAATA 1177
+ + YD A D++ + E+ S + L KT+ADVVEAL+G + G AA
Sbjct: 1446 GCELQKESYDDYA-DNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGGKIAANH 1504
Query: 1178 FLKWIGIQVEFEASQVTNICISSKSF-LPLSA--SLDMATLEILLGHQFLHRGLLLQAFV 1234
+KWIGI E + ++ K + +P S S++ TL+ +LG +F ++GLL++A
Sbjct: 1505 LMKWIGIHAELDPEEIP----PPKPYDIPESIMRSINFDTLKGVLGIEFQNKGLLVEAIT 1560
Query: 1235 HPSFNRLG-GCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVA 1293
H S G CYQRLEF+GDAVLD+LIT +L+ Y L PG+LTDLR+ VNN+ FA VA
Sbjct: 1561 HASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVA 1620
Query: 1294 VDQSFYKFLIFDSNVLSETINNYV----DYMITPSSTREVKEGPRCPKVLGDLVESSLGA 1349
V + L S+ L I +V + ++ P + PKVLGD+VES GA
Sbjct: 1621 VKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGA 1680
Query: 1350 ILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFL 1409
I LDSG++ + VWK+ L P++ L ++P+REL E C L++ + + G
Sbjct: 1681 IFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRAGNIAT 1740
Query: 1410 AEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLK 1448
E V G V A N +K A ++A++ LK
Sbjct: 1741 VEVFVDGVQIGV-----AQNPQKKMAQKLAARNALVVLK 1774
Score = 466 (169.1 bits), Expect = 5.2e-150, Sum P(5) = 5.2e-150
Identities = 108/277 (38%), Positives = 159/277 (57%)
Query: 412 LIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRN 471
LI IL ++ + + I+FV R+VTA L +L L L+ RC L+G N + M
Sbjct: 629 LIKILLKYQHTEDFRAIIFVERVVTALVLPKVLAELPSLSFIRCASLIGHNNN-QEMRAC 687
Query: 472 AMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSE 531
M+ + KFR G + LLVAT V EEGLDI+ C +VIRFDL +TV ++IQSRGRAR P S+
Sbjct: 688 QMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 747
Query: 532 YAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSS---DAFTC------SEERIYKVDS 582
Y +++ GN ++N E+ + +E M+RT D + S +Y+V+S
Sbjct: 748 YILMLERGNISHETFLRNARNSEETLRKEAMERTDLSHLDGTSVLSPVDTSPGSMYQVES 807
Query: 583 SGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYY--FDDLGGTI---CHIILPANAPIH 637
+GA +S V L+H YCS+LP D + P+F ++ GG++ C + LP NAP
Sbjct: 808 TGAVVSLNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCNAPFE 867
Query: 638 QIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLP 674
++ G SS+ A++ CL A + LH++GA D LLP
Sbjct: 868 KLEGPICSSIRLAQQAVCLAACKKLHEMGAFTDTLLP 904
Score = 263 (97.6 bits), Expect = 5.2e-150, Sum P(5) = 5.2e-150
Identities = 65/151 (43%), Positives = 92/151 (60%)
Query: 156 YEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM-KV 214
Y+VLVM QILL L H IKM+ I LLI DECHHA VK HPY+ +M +FY K
Sbjct: 328 YQVLVMTAQILLNILRHSIIKMDAIHLLILDECHHA-VKK-HPYSLVMSEFYHTTPKEKR 385
Query: 215 PRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQY 274
P +FGMTASPV KG ++Q + I +LE+ LD+ V +++D ++LE V P+ V QY
Sbjct: 386 PAVFGMTASPVNLKGVTSQEDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPLEVVVQY 445
Query: 275 GPVINDTSSSYVTCSEQLAEIKREQYISALS 305
D +++ + EQ+ +++ +ALS
Sbjct: 446 -----DKAATLWSLHEQIKQMESTVEEAALS 471
Score = 213 (80.0 bits), Expect = 1.6e-123, Sum P(5) = 1.6e-123
Identities = 78/303 (25%), Positives = 132/303 (43%)
Query: 577 IYKVDSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYY--FDDLGGTI---CHIILP 631
+Y+V+S+GA +S V L+H YCS+LP D + P+F ++ GG++ C + LP
Sbjct: 802 MYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLP 861
Query: 632 ANAPIHQIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQ----EDNATED----E 683
NAP ++ G SS+ A++ CL A + LH++GA D LLP E TE E
Sbjct: 862 CNAPFEKLEGPICSSIRLAQQAVCLAACKKLHEMGAFTDTLLPDRGSGEGEKTEQNDEGE 921
Query: 684 PMLFXXXXXXXXXXXXXXXLH-EMLVPAVLRQSWTKSQYPVRLNFYFMQFI-----PDPA 737
P+ L E ++ R + SQ+ ++L Y + + DP
Sbjct: 922 PLPGTARHREFYPEGVADILRGEWILSG--RDGYQNSQF-IKLYMYSVNCVNVGTSKDPF 978
Query: 738 DRIYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSGIMQAQQFQEMFLKVILDR 797
F + + L E +DL +AR LV G ++ + Q + LK
Sbjct: 979 VTQLSNFAIIFGNELDAEVLSTTMDLFVARTMITKASLVFRGRIEITESQLVLLK----- 1033
Query: 798 SEFNSEFVPLGKDDYCESSSSTF-----YLLLPVIFHK-----NSVDWKIIRRCLSSPVF 847
F+ + + D + S++ + YL +PV K +DW ++ +++ +
Sbjct: 1034 -SFHVRLMSIVLDVDVDPSTTPWDPAKAYLFVPVGAEKCTDPLREIDWTLVNNIVNTDAW 1092
Query: 848 GTP 850
P
Sbjct: 1093 NNP 1095
Score = 140 (54.3 bits), Expect = 5.2e-150, Sum P(5) = 5.2e-150
Identities = 34/82 (41%), Positives = 53/82 (64%)
Query: 42 AESS-VGAQKTDKD-PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAH- 98
AE+ +GA + +K ++ AR+YQLE+ ++A N I +L TG GKT IAVLLI +
Sbjct: 248 AEADRMGAAQREKPVAEERARQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSVCDK 307
Query: 99 LIRKPQKSICIFLAPTVALVQQ 120
++++ +K + +FL P V LV Q
Sbjct: 308 MLKENKKMLAVFLVPKVPLVYQ 329
Score = 93 (37.8 bits), Expect = 5.2e-150, Sum P(5) = 5.2e-150
Identities = 22/75 (29%), Positives = 29/75 (38%)
Query: 1523 RSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQXXXXXX 1582
R L ++C W P + C E G +H K F + V V ECIGEP
Sbjct: 1799 RQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKA 1858
Query: 1583 XXXXXXXMLWCLERE 1597
+L L R+
Sbjct: 1859 KDSAAVLLLELLNRD 1873
Score = 50 (22.7 bits), Expect = 1.7e-30, Sum P(4) = 1.7e-30
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 360 EAEGNTIDDSL--CRFASQASEVFAAICRRDG-IASDLSCIEVLKEPFFSKKLLRLIGI 415
E E + D+ C ++ + +A + DG I D SC VL + + LIG+
Sbjct: 1434 EYEPSIFDEESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGV 1492
Score = 40 (19.1 bits), Expect = 4.6e-25, Sum P(4) = 4.6e-25
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 638 QIVGTPQSSMEAAKKDACLKAIEDLHK 664
+ +G P S++ AK A + +E L++
Sbjct: 1846 ECIGEPMPSVKKAKDSAAVLLLELLNR 1872
Score = 38 (18.4 bits), Expect = 2.6e-73, Sum P(5) = 2.6e-73
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 811 DYCESSSSTFYLLLP 825
D+ E+ T+Y+ LP
Sbjct: 1274 DFSENLDKTYYVYLP 1288
>MGI|MGI:2177178 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IMP] [GO:0001932 "regulation of protein phosphorylation"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=ISO;ISA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005793 "endoplasmic reticulum-Golgi
intermediate compartment" evidence=ISO] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008593 "regulation of Notch signaling pathway" evidence=IC]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010070
"zygote asymmetric cell division" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0010626 "negative
regulation of Schwann cell proliferation" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0014040
"positive regulation of Schwann cell differentiation" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IMP] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021675 "nerve development"
evidence=IMP] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IMP] [GO:0021987 "cerebral cortex
development" evidence=IMP] [GO:0030324 "lung development"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO;IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0030426 "growth cone" evidence=ISO] [GO:0031047 "gene silencing
by RNA" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=ISO;IDA] [GO:0031069 "hair follicle morphogenesis"
evidence=IMP] [GO:0031641 "regulation of myelination" evidence=IMP]
[GO:0031643 "positive regulation of myelination" evidence=IMP]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP] [GO:0035198 "miRNA binding"
evidence=IDA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IMP] [GO:0042981 "regulation of
apoptotic process" evidence=IMP] [GO:0043066 "negative regulation
of apoptotic process" evidence=IMP] [GO:0045069 "regulation of
viral genome replication" evidence=IMP] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] [GO:0045664 "regulation of
neuron differentiation" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048536 "spleen development" evidence=IMP] [GO:0048565
"digestive tract development" evidence=IMP] [GO:0048713 "regulation
of oligodendrocyte differentiation" evidence=IMP] [GO:0048730
"epidermis morphogenesis" evidence=IMP] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IMP] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] [GO:0050767
"regulation of neurogenesis" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0051726 "regulation of cell cycle" evidence=IMP]
[GO:0055013 "cardiac muscle cell development" evidence=IMP]
[GO:0060119 "inner ear receptor cell development" evidence=IMP]
[GO:0060253 "negative regulation of glial cell proliferation"
evidence=IMP] [GO:0060576 "intestinal epithelial cell development"
evidence=IGI] [GO:0070173 "regulation of enamel mineralization"
evidence=IMP] [GO:0071335 "hair follicle cell proliferation"
evidence=IMP] [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 MGI:MGI:2177178 GO:GO:0005524
GO:GO:0010070 GO:GO:0005737 GO:GO:0006915 GO:GO:0021987
GO:GO:0043066 GO:GO:0045664 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0001932 GO:GO:0016075 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0010626
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
HOVERGEN:HBG107811 GO:GO:0071335 GO:GO:0060576 GO:GO:0021889
GO:GO:0032290 GO:GO:0031643 GO:GO:0014040 GO:GO:0070173
GO:GO:0048713 EMBL:AF484523 EMBL:AF484524 EMBL:AB081470
EMBL:AF430845 IPI:IPI00227881 UniGene:Mm.21135 PDB:3C4B PDB:3C4T
PDBsum:3C4B PDBsum:3C4T ProteinModelPortal:Q8R418 SMR:Q8R418
DIP:DIP-29721N IntAct:Q8R418 STRING:Q8R418 PhosphoSite:Q8R418
PaxDb:Q8R418 PRIDE:Q8R418 UCSC:uc007oxi.1 InParanoid:Q8R419
EvolutionaryTrace:Q8R418 CleanEx:MM_DICER1 Genevestigator:Q8R418
GermOnline:ENSMUSG00000041415 GO:GO:0060119 GO:GO:2000630
GO:GO:0008593 Uniprot:Q8R418
Length = 1916
Score = 347 (127.2 bits), Expect = 4.7e-97, Sum P(6) = 4.7e-97
Identities = 86/225 (38%), Positives = 126/225 (56%)
Query: 1214 TLEILLGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKL 1271
T E + ++F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY +
Sbjct: 1662 TFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1721
Query: 1272 KPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR---- 1327
PG LTDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1722 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDS 1781
Query: 1328 ---------EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS- 1376
E +E PK +GD+ ES GAI +DSG +L VW++ + P++ KFS
Sbjct: 1782 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSA 1841
Query: 1377 NLQLNPIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
N+ +P+RELLE+ +F ++ GK +V GK K
Sbjct: 1842 NVPRSPVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1883
Score = 315 (115.9 bits), Expect = 4.7e-97, Sum P(6) = 4.7e-97
Identities = 87/270 (32%), Positives = 134/270 (49%)
Query: 428 IVFVNRIVTARALSYILQNL----KFLASWRCHFLVGVNAGL-----KSMSRNAMKS--I 476
I+FV R TA L+ +++ LA +F+ G G K M K +
Sbjct: 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEEV 504
Query: 477 LEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLV 536
L KFR+ E NLL+AT V EEG+DI C LV+RFDLP S++QS+GRAR P S Y L
Sbjct: 505 LRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVMLA 564
Query: 537 DSGNQRELDL-IKNFSKEEDRMNREIM---DRTSSDAFTCSEER------IYKVDSSGAC 586
D+ + + +K + E + + D +D ++ + + D G
Sbjct: 565 DTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDDEDAFPPYVLRPDDGGPR 624
Query: 587 ISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHII-LPANAPIH-QIVGTPQ 644
++ + ++RYC++LP D F + PK + GT + LP N+P+ IVG P
Sbjct: 625 VTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPM 684
Query: 645 SSMEAAKKDACLKAIEDLHKLGALNDYLLP 674
S+ A++ L E LHK+G L+++L+P
Sbjct: 685 DSVRLAERVVALICCEKLHKIGELDEHLMP 714
Score = 286 (105.7 bits), Expect = 4.7e-97, Sum P(6) = 4.7e-97
Identities = 81/230 (35%), Positives = 113/230 (49%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIR---KPQKSICIFLAPTVA 116
RKYQ+EL + A++ N IV L TG GKT IAVLL ELAH IR P +FL +
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVNSAN 104
Query: 117 LVQQQAKVIEESIGFKVRTFCGGSKRLKSHCD-WEKEIDQYEVLVMIPQILLYCLYHRFI 175
V QQ + KV + + W +E +++VL+M + L L + ++
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKNGYL 164
Query: 176 KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQAN 235
+ I LL+FDECH A + +HPY +IMK PRI G+TAS + GK +
Sbjct: 165 SLSDINLLVFDECHLAIL--DHPYREIMK--LCESCPSCPRILGLTASILNGKCDPEE-- 218
Query: 236 LPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSY 285
L + I LE +L + + D L+ + S P V GP D S Y
Sbjct: 219 LEEKIQKLERILRSDAETATDLVVLDRYTSQPCEIVVDCGP-FTDRSGLY 267
Score = 177 (67.4 bits), Expect = 9.6e-78, Sum P(5) = 9.6e-78
Identities = 92/408 (22%), Positives = 170/408 (41%)
Query: 577 IYKVDSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHII-LPANAP 635
+ + D G ++ + ++RYC++LP D F + PK + GT + LP N+P
Sbjct: 615 VLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSP 674
Query: 636 IH-QIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLP--QEDNATEDEPMLFXXXXX 692
+ IVG P S+ A++ L E LHK+G L+++L+P +E E+E L
Sbjct: 675 LRASIVGPPMDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEET 734
Query: 693 XXXX---XXXXXXLHEMLVPAVLRQSWTKSQYPVRLNFYFMQF---IPDPAD----RIY- 741
+ +P LR+S+ K P L M +PD + ++Y
Sbjct: 735 SVPGRPGSTKRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYP 794
Query: 742 -----REFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGIMQAQQFQEMFLKVIL 795
R FG+ +P + H V + G ++ +L SG +QQ E+ + L
Sbjct: 795 PEDTTRCFGILTAKPIP-QIPHFPV--YTRSGEVTISIELKKSGFTLSQQMLELITR--L 849
Query: 796 DRSEFNSEFVPLGKD--DYCESSSSTFYLLLPVIFHKNS----VDWKIIRRCLSSPV-FG 848
+ F S + L K ++ + + + Y +LP+ +S +D+K + S G
Sbjct: 850 HQYIF-SHILRLEKPALEFKPTGAESAYCVLPLNVVNDSGTLDIDFKFMEDIEKSEARIG 908
Query: 849 TPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKW-----FYLVTNIVFEKNGY 903
P +++ P L+ D +++++ ++ + FY V ++ +
Sbjct: 909 IPSTKYSKET-PFVFKLE---------DYQDAVIIPRYRNFDQPHRFY-VADVYTDLTPL 957
Query: 904 SPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKL 951
S + + + ++ + Y + L + QPLL NLL R L
Sbjct: 958 SKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHL 1005
Score = 163 (62.4 bits), Expect = 4.7e-97, Sum P(6) = 4.7e-97
Identities = 39/126 (30%), Positives = 69/126 (54%)
Query: 979 SKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGA-EVSAEMLLKALTTEKCQERF 1037
+ D ++S +P++M+ ++ L ++ + S + + ++L+ALT + F
Sbjct: 1251 TSDGSPAVSTMPAMMNAVKALKDRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGF 1310
Query: 1038 SLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIR 1097
+LERLE+LGD+FLK+A+ +LF + EG L+ RS V+N NL +L + L +
Sbjct: 1311 NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 1370
Query: 1098 DQPFDP 1103
FDP
Sbjct: 1371 VSIFDP 1376
Score = 106 (42.4 bits), Expect = 3.4e-57, Sum P(4) = 3.4e-57
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 1227 GLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNN 1286
GL+LQA + + G +RLE LGD+ L + IT+YL+ YP G+L+ +RS V+N
Sbjct: 1295 GLILQALTLSNASD-GFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSN 1353
Score = 98 (39.6 bits), Expect = 2.3e-56, Sum P(4) = 2.3e-56
Identities = 38/132 (28%), Positives = 55/132 (41%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
+RLE LGDA L Y + +HL+ G LT RS VNN+ LA + + Y +
Sbjct: 1696 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-- 1753
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
P F + K + + S+ R+ +D E K + D+
Sbjct: 1754 AVSPELFHVIDDFVKFQLEKNEMQGMDSELR-RSEEDEEKEEDIEV------PKAMGDIF 1806
Query: 1160 EALVGAFIDDSG 1171
E+L GA DSG
Sbjct: 1807 ESLAGAIYMDSG 1818
Score = 96 (38.9 bits), Expect = 4.7e-97, Sum P(6) = 4.7e-97
Identities = 74/311 (23%), Positives = 131/311 (42%)
Query: 722 PVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGI 780
P LNF + P P D R FG+ +P + H V + G ++ +L SG
Sbjct: 782 PDELNFRRRKLYP-PEDTT-RCFGILTAKPIP-QIPHFPV--YTRSGEVTISIELKKSGF 836
Query: 781 MQAQQFQEMFLKVILDRSEFNSEFVPLGKD--DYCESSSSTFYLLLPVIFHKNS----VD 834
+QQ E+ + L + F S + L K ++ + + + Y +LP+ +S +D
Sbjct: 837 TLSQQMLELITR--LHQYIF-SHILRLEKPALEFKPTGAESAYCVLPLNVVNDSGTLDID 893
Query: 835 WKIIRRCLSSPV-FGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKW---- 889
+K + S G P +++ P L+ D +++++ ++ +
Sbjct: 894 FKFMEDIEKSEARIGIPSTKYSKET-PFVFKLE---------DYQDAVIIPRYRNFDQPH 943
Query: 890 -FYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL-- 946
FY V ++ + S + + + ++ + Y + L + QPLL NLL
Sbjct: 944 RFY-VADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTP 1002
Query: 947 -H-NRK-----LEDSESHELE-EYFDD---LPPELCQLKIIGFSKDIGSSLSLLPSIMHR 995
H N+K L +E + + E + L PELC + I S + LPSI++R
Sbjct: 1003 RHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPAS--LWRKAVCLPSILYR 1060
Query: 996 LENLLVAIELK 1006
L LL A EL+
Sbjct: 1061 LHCLLTAEELR 1071
Score = 76 (31.8 bits), Expect = 4.7e-97, Sum P(6) = 4.7e-97
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
K+IAD VEAL+G ++ G +AA FL +G++V
Sbjct: 1553 KSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1586
Score = 58 (25.5 bits), Expect = 1.6e-40, Sum P(5) = 1.6e-40
Identities = 27/98 (27%), Positives = 42/98 (42%)
Query: 236 LPKSINSLENLLDAKVYSVEDAEDLESFVSS-PVVRVY---QYGPVINDTSSSYV-TCSE 290
LP + L LL A+ + A D V S PV Y +G + S S++ TC+
Sbjct: 1054 LPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWKKSIDSKSFISTCNS 1113
Query: 291 QLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSM 328
LAE + Y + + +H + + T+ HD M
Sbjct: 1114 SLAE--SDNYCKHSTTVVPEHAAHQGATRPSLENHDQM 1149
Score = 45 (20.9 bits), Expect = 9.2e-92, Sum P(6) = 9.2e-92
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 853 SVDRKSLPSHGPLQLHNGWSSESDVENSLVY 883
SV+ K LP+ P +L + S++ N L Y
Sbjct: 1150 SVNCKRLPAESPAKLQSEVSTDLTAINGLSY 1180
Score = 41 (19.5 bits), Expect = 8.1e-39, Sum P(5) = 8.1e-39
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 229 GA-SAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVI 278
GA SA LP ++ + LD +ED E E+ + P + + P +
Sbjct: 871 GAESAYCVLPLNVVNDSGTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFV 921
Score = 37 (18.1 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 1238 FNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL------TDLRSMLV 1284
F G Y+RL +A LD+ I +V+ K + L +D R++LV
Sbjct: 260 FTDRSGLYERLLMELEAALDF-INDCNVAVHSKERDSTLISKQILSDCRAVLV 311
>UNIPROTKB|A0MQH0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:10029
"Cricetulus griseus" [GO:0016442 "RNA-induced silencing complex"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EF031271 RefSeq:NP_001231198.1
ProteinModelPortal:A0MQH0 SMR:A0MQH0 GeneID:100689239
Uniprot:A0MQH0
Length = 1917
Score = 341 (125.1 bits), Expect = 1.1e-95, Sum P(6) = 1.1e-95
Identities = 84/220 (38%), Positives = 124/220 (56%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ ++F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 1668 INYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 1727
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1728 TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1787
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L VW++ + P++ KFS N+ +
Sbjct: 1788 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRS 1847
Query: 1382 PIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
P+RELLE+ +F ++ GK +V GK K
Sbjct: 1848 PVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1884
Score = 308 (113.5 bits), Expect = 1.1e-95, Sum P(6) = 1.1e-95
Identities = 86/270 (31%), Positives = 134/270 (49%)
Query: 428 IVFVNRIVTARALSYILQNL----KFLASWRCHFLVGVNAGL-----KSMSRNAMKS--I 476
I+FV R TA L+ +++ LA +F+ G G K M K +
Sbjct: 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEEV 504
Query: 477 LEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLV 536
L KFR+ E NLL+AT V EEG+DI C LV+RFDLP S++QS+GRAR P S Y L
Sbjct: 505 LRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVMLA 564
Query: 537 DSGNQRELDL-IKNFSKEEDRMNREI---MDRTSSDAFTCSEER------IYKVDSSGAC 586
D+ + + +K + E + + +D +D ++ + + D G
Sbjct: 565 DTDKIQSFEEDLKTYKAIEKILRNKCSKSVDGAEADVDAVVDDDDVFPPYVLRPDDGGPR 624
Query: 587 ISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHII-LPANAPIH-QIVGTPQ 644
++ + ++RYC++LP D F + PK + GT + LP N+P+ IVG P
Sbjct: 625 VTINTAIGHVNRYCARLPSDPFTHLAPKCRTQELPDGTFYSTLYLPINSPLRASIVGPPM 684
Query: 645 SSMEAAKKDACLKAIEDLHKLGALNDYLLP 674
+ A++ L E LHK+G L+++L+P
Sbjct: 685 GCVRLAERVVALICCEKLHKIGELDEHLMP 714
Score = 292 (107.8 bits), Expect = 1.1e-95, Sum P(6) = 1.1e-95
Identities = 83/239 (34%), Positives = 117/239 (48%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIR---KPQKSICIFLAPTVA 116
RKYQ+EL + A++ N IV L TG GKT IAVLL ELAH IR P+ +FL +
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPRAKRTVFLVNSAN 104
Query: 117 LVQQQAKVIEESIGFKVRTFCGGSKRLKSHCD-WEKEIDQYEVLVMIPQILLYCLYHRFI 175
V QQ + KV + + W +E +++VL+M + L L + ++
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTKHQVLIMTCYVALNVLKNGYL 164
Query: 176 KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQAN 235
+ I LL+FDECH A + +HPY +IMK PRI G+TAS + GK +
Sbjct: 165 SLSDINLLVFDECHLAIL--DHPYREIMK--LCESCPSCPRILGLTASILNGKCDPEE-- 218
Query: 236 LPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAE 294
L + I LE +L + + D L+ + S P V GP D S Y +L E
Sbjct: 219 LEEKIQKLEKILKSNAETATDLVVLDRYASQPCEIVVDCGP-FTDRSGLYERLLMELEE 276
Score = 167 (63.8 bits), Expect = 1.8e-76, Sum P(5) = 1.8e-76
Identities = 90/408 (22%), Positives = 170/408 (41%)
Query: 577 IYKVDSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHII-LPANAP 635
+ + D G ++ + ++RYC++LP D F + PK + GT + LP N+P
Sbjct: 615 VLRPDDGGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTQELPDGTFYSTLYLPINSP 674
Query: 636 IH-QIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLP--QEDNATEDEPMLFXXXXX 692
+ IVG P + A++ L E LHK+G L+++L+P +E E+E L
Sbjct: 675 LRASIVGPPMGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEET 734
Query: 693 XXXX---XXXXXXLHEMLVPAVLRQSWTKSQYPVRLNFYFMQF---IPDPAD----RIY- 741
+ +P LR+S+ K P L M +PD + ++Y
Sbjct: 735 SVPGRPGSTKRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYP 794
Query: 742 -----REFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGIMQAQQFQEMFLKVIL 795
R FG+ +P + H V + G ++ +L SG +QQ E+ + L
Sbjct: 795 PEDTTRCFGILTAKPIP-QIPHFPV--YTRSGEVTISIELKKSGFTLSQQMLELITR--L 849
Query: 796 DRSEFNSEFVPLGKD--DYCESSSSTFYLLLPV-IFHKNS---VDWKIIRRCLSSPV-FG 848
+ F S + L K ++ + + + Y +LP+ + + +S +D+ + S G
Sbjct: 850 HQYIF-SHILRLEKPALEFKPTGAESAYCVLPLNVVNDSSTLDIDFTFMEDIEKSEARIG 908
Query: 849 TPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKW-----FYLVTNIVFEKNGY 903
P +++ P L+ D +++++ ++ + FY V ++ +
Sbjct: 909 IPSTKYSKET-PFVFKLE---------DYQDAVIIPRYRNFDQPHRFY-VADVYTDLTPL 957
Query: 904 SPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKL 951
S + + + ++ + Y + L + QPLL NLL R L
Sbjct: 958 SKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHL 1005
Score = 161 (61.7 bits), Expect = 1.1e-95, Sum P(6) = 1.1e-95
Identities = 40/126 (31%), Positives = 67/126 (53%)
Query: 979 SKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGA-EVSAEMLLKALTTEKCQERF 1037
+ D ++S +P++M L ++ + SA + + ++L+ALT + F
Sbjct: 1251 TSDGSPAVSTMPAVMSAGRALKDRMDSEQSPSAGYSSRTLGPNPGLILQALTLSNASDGF 1310
Query: 1038 SLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIR 1097
+LERLE+LGD+FLK+A+ +LF + EG L+ RS V+N NL +L + L +
Sbjct: 1311 NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 1370
Query: 1098 DQPFDP 1103
FDP
Sbjct: 1371 VSIFDP 1376
Score = 106 (42.4 bits), Expect = 1.2e-56, Sum P(4) = 1.2e-56
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 1227 GLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNN 1286
GL+LQA + + G +RLE LGD+ L + IT+YL+ YP G+L+ +RS V+N
Sbjct: 1295 GLILQALTLSNASD-GFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSN 1353
Score = 98 (39.6 bits), Expect = 8.1e-56, Sum P(4) = 8.1e-56
Identities = 38/132 (28%), Positives = 55/132 (41%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
+RLE LGDA L Y + +HL+ G LT RS VNN+ LA + + Y +
Sbjct: 1697 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-- 1754
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
P F + K + + S+ R+ +D E K + D+
Sbjct: 1755 AVSPELFHVIDDFVQFQLEKNEMQGMDSELR-RSEEDEEKEEDIEV------PKAMGDIF 1807
Query: 1160 EALVGAFIDDSG 1171
E+L GA DSG
Sbjct: 1808 ESLAGAIYMDSG 1819
Score = 92 (37.4 bits), Expect = 1.1e-95, Sum P(6) = 1.1e-95
Identities = 73/311 (23%), Positives = 132/311 (42%)
Query: 722 PVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGI 780
P LNF + P P D R FG+ +P + H V + G ++ +L SG
Sbjct: 782 PDELNFRRRKLYP-PEDTT-RCFGILTAKPIP-QIPHFPV--YTRSGEVTISIELKKSGF 836
Query: 781 MQAQQFQEMFLKVILDRSEFNSEFVPLGKD--DYCESSSSTFYLLLPV-IFHKNS---VD 834
+QQ E+ + L + F S + L K ++ + + + Y +LP+ + + +S +D
Sbjct: 837 TLSQQMLELITR--LHQYIF-SHILRLEKPALEFKPTGAESAYCVLPLNVVNDSSTLDID 893
Query: 835 WKIIRRCLSSPV-FGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKW---- 889
+ + S G P +++ P L+ D +++++ ++ +
Sbjct: 894 FTFMEDIEKSEARIGIPSTKYSKET-PFVFKLE---------DYQDAVIIPRYRNFDQPH 943
Query: 890 -FYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL-- 946
FY V ++ + S + + + ++ + Y + L + QPLL NLL
Sbjct: 944 RFY-VADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTP 1002
Query: 947 -H-NRK-----LEDSESHELE-EYFDD---LPPELCQLKIIGFSKDIGSSLSLLPSIMHR 995
H N+K L +E + + E + L PELC + I S + LPSI++R
Sbjct: 1003 RHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPAS--LWRKAVCLPSILYR 1060
Query: 996 LENLLVAIELK 1006
L LL A EL+
Sbjct: 1061 LHCLLTAEELR 1071
Score = 76 (31.8 bits), Expect = 1.1e-95, Sum P(6) = 1.1e-95
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
K+IAD VEAL+G ++ G +AA FL +G++V
Sbjct: 1553 KSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1586
Score = 49 (22.3 bits), Expect = 7.9e-19, Sum P(3) = 7.9e-19
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 1455 KT-KSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQGGSSCDIGS 1509
KT K++E IL++ K + G E ++ V DD+VF + GG I +
Sbjct: 577 KTYKAIEKILRN--KCSKSVDGA-EADVDAVVDDDDVFPPYVLRPDDGGPRVTINT 629
Score = 44 (20.5 bits), Expect = 1.5e-38, Sum P(4) = 1.5e-38
Identities = 25/98 (25%), Positives = 41/98 (41%)
Query: 236 LPKSINSLENLLDAKVYSVEDAEDLESFVSS-PVVRVY---QYGPVINDTSSSYV-TCSE 290
LP + L LL A+ + A D V S P Y +G + S S++ TC+
Sbjct: 1054 LPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWKKSIDSKSFISTCNS 1113
Query: 291 QLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSM 328
LAE + Y + + ++ + + T+ HD M
Sbjct: 1114 SLAE--NDNYCKHSTIIVPENAAHQGATRTPLENHDQM 1149
Score = 43 (20.2 bits), Expect = 3.8e-76, Sum P(4) = 3.8e-76
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 707 LVPAVLRQSWTKSQYPVRLNFYFMQ 731
++P + R S K+ YP + NF Q
Sbjct: 1586 VLPVIKRTSREKALYPAQENFSSQQ 1610
Score = 42 (19.8 bits), Expect = 2.5e-38, Sum P(4) = 2.5e-38
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 229 GA-SAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVI 278
GA SA LP ++ + + LD +ED E E+ + P + + P +
Sbjct: 871 GAESAYCVLPLNVVNDSSTLDIDFTFMEDIEKSEARIGIPSTKYSKETPFV 921
Score = 41 (19.5 bits), Expect = 2.4e-63, Sum P(5) = 2.4e-63
Identities = 20/90 (22%), Positives = 39/90 (43%)
Query: 731 QFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSGIMQAQQFQEMF 790
++I + ++R+F LF +LL H + H + S+ K V +M+ + +
Sbjct: 331 KYIKHEQEELHRKFLLFTDTLL--RKIHALCEEHFSPA-SLDLKYVTPKVMKLLEILRKY 387
Query: 791 LKVILDRSEFNSE--FVPLGKDDYCESSSS 818
+R +F S + +D+Y S S
Sbjct: 388 KPY--ERQQFESVEWYNNRNQDNYVSWSDS 415
>ZFIN|ZDB-GENE-030131-3445 [details] [associations]
symbol:dicer1 "Dicer1, Dcr-1 homolog (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=ISS;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0070883 "pre-miRNA binding" evidence=IDA] [GO:0021591
"ventricular system development" evidence=IGI;IMP] [GO:0035279
"mRNA cleavage involved in gene silencing by miRNA" evidence=IGI]
[GO:0035195 "gene silencing by miRNA" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720
ZFIN:ZDB-GENE-030131-3445 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0035279 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
GO:GO:0021591 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P66666 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
eggNOG:COG0571 GO:GO:0070883 CTD:23405 HOGENOM:HOG000001567
EMBL:AL772219 EMBL:AY386319 IPI:IPI00933004 RefSeq:NP_001154925.1
UniGene:Dr.78137 STRING:Q6TV19 Ensembl:ENSDART00000045881
Ensembl:ENSDART00000109826 GeneID:324724 KEGG:dre:324724
InParanoid:Q6TV19 OrthoDB:EOG4JDH5W NextBio:20808937
ArrayExpress:Q6TV19 Bgee:Q6TV19 Uniprot:Q6TV19
Length = 1865
Score = 345 (126.5 bits), Expect = 2.9e-95, Sum P(6) = 2.9e-95
Identities = 86/223 (38%), Positives = 125/223 (56%)
Query: 1216 EILLGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKP 1273
E + + F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + P
Sbjct: 1613 ESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1672
Query: 1274 GQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR------ 1327
G LTDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1673 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1732
Query: 1328 -------EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NL 1378
E +E PK +GD+ ES GAI +DSG +L TVW++ + P++ KFS N+
Sbjct: 1733 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1792
Query: 1379 QLNPIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
+P+RELLE+ +F ++ GK +V GK K
Sbjct: 1793 PRSPVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1832
Score = 308 (113.5 bits), Expect = 2.9e-95, Sum P(6) = 2.9e-95
Identities = 88/273 (32%), Positives = 137/273 (50%)
Query: 428 IVFVNRIVTARALSYILQNL----KFLASWRCHFLVGVNAGLKSMSRNAM--------KS 475
I+FV R TA L+ +++ LA +F+ G + G K+ RN +
Sbjct: 431 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIG-KNQPRNKQMEVEFRKQEE 489
Query: 476 ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFL 535
+L KFR+ E NLL+AT + EEG+DI C LV+RFDLP S++QS+GRAR P S Y L
Sbjct: 490 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIML 549
Query: 536 VDSGN----QRELD-------LIKN-FSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSS 583
DS Q +L +++N SK + + E+ T D + + +
Sbjct: 550 ADSERTKTFQEDLKTYKAIEKILRNKCSKSAECNDFELEPVTDDD--NVLPPYVLRSEDG 607
Query: 584 GACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFD-DLGGTICHIILPANAPIH-QIVG 641
G ++ + ++RYC++LP D F + PK + + GG + LP N+P+ + G
Sbjct: 608 GPRVTMNTAIGHVNRYCARLPSDPFTHLAPKCKTVEMNTGGYRSTLFLPINSPLRVPVTG 667
Query: 642 TPQSSMEAAKKDACLKAIEDLHKLGALNDYLLP 674
+ A+K L E LHK+G L+D+L+P
Sbjct: 668 PVMNCARLAEKAVALLCCEKLHKIGELDDHLMP 700
Score = 296 (109.3 bits), Expect = 2.9e-95, Sum P(6) = 2.9e-95
Identities = 79/216 (36%), Positives = 109/216 (50%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
RKYQ+EL + A+E N IV L TG GKT IAVLLI EL+H IR +FL + V
Sbjct: 35 RKYQVELLEAALEHNTIVCLNTGSGKTFIAVLLIKELSHQIRGENGKRTVFLVNAASSVA 94
Query: 120 QQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMEL 179
QQA + +V + W +E+ + +VLVM I L+ L + + +
Sbjct: 95 QQASTVRTHSDLQVGDYMSEDMTSWPEEMWNREMIENQVLVMTCHIFLHVLKNGVLPLSK 154
Query: 180 IALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKS 239
I LL+FDECH A + HPY +IMK PRI G+TAS + GK +L +
Sbjct: 155 INLLVFDECHLAI--TGHPYREIMK--ICEGCPSCPRILGLTASILNGK--CDPCDLEEK 208
Query: 240 INSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYG 275
I +LE +L + + D L+ + S P V G
Sbjct: 209 IQNLEKILQSNAETATDLVVLDRYASQPREEVLDCG 244
Score = 156 (60.0 bits), Expect = 2.9e-95, Sum P(6) = 2.9e-95
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 1023 MLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSN 1082
++L+ALT + F+LERLE+LGD+FLK+A+ +LF + EG L+ RS V+N N
Sbjct: 1278 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1337
Query: 1083 LLKLAARNNLQVYIRDQPFDP 1103
L +L + L + FDP
Sbjct: 1338 LYRLGKKKGLPSRMVVSIFDP 1358
Score = 106 (42.4 bits), Expect = 2.7e-56, Sum P(4) = 2.7e-56
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 1227 GLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNN 1286
GL+LQA + + G +RLE LGD+ L + IT+YL+ YP G+L+ +RS V+N
Sbjct: 1277 GLILQALTLSNASD-GFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSN 1335
Score = 102 (41.0 bits), Expect = 7.1e-56, Sum P(4) = 7.1e-56
Identities = 39/139 (28%), Positives = 57/139 (41%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
+RLE LGDA L Y + +HL+ G LT RS VNN+ LA + + Y +
Sbjct: 1645 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-- 1702
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
P F + K + + S+ R+ +D E K + D+
Sbjct: 1703 AVSPELFHVIDDFVQFQLEKNEMQGMDSELR-RSEEDEEKEEDIEV------PKAMGDIF 1755
Query: 1160 EALVGAFIDDSGFKAATAF 1178
E+L GA DSG T +
Sbjct: 1756 ESLAGAIYMDSGMSLETVW 1774
Score = 84 (34.6 bits), Expect = 2.9e-95, Sum P(6) = 2.9e-95
Identities = 76/324 (23%), Positives = 135/324 (41%)
Query: 722 PVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGI 780
P LNF + P P D R FG+ +P H V + G ++ +L SG
Sbjct: 768 PDELNFRRRKLYP-PEDTT-RCFGILTAKPIP-RIPHFPV--YTRSGEVTISIELQKSGF 822
Query: 781 -MQAQQFQEMFLKVILDRSEFNSEFVPLGKD--DYCESSSSTFYLLLP--VIFHKNSVD- 834
+ A+Q E+ + L + F S + L K ++ + + Y +LP ++ N++D
Sbjct: 823 SLSAEQL-ELITR--LHQYIF-SHILRLEKPALEFKPVEADSAYCVLPLNIVEDSNTLDL 878
Query: 835 -WKIIRRCLSSPV-FGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKW--- 889
+K + S G P +++ P L+ D +++++ ++ +
Sbjct: 879 DFKFMEDIEKSEARIGIPNTQYTKQN-PFIFKLE---------DYQDAVIIPRYRNFDQP 928
Query: 890 --FYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL- 946
FY V ++ + S + + + ++ + Y + L + QPLL NLL
Sbjct: 929 HRFY-VADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLSNVNQPLLDVDHTSSRLNLLT 987
Query: 947 --H-NRK-----LEDSESHELE-EYFDD---LPPELCQLKIIGFSKDIGSSLSLLPSIMH 994
H N+K L +E + + E + L PELC + I S + LPSI++
Sbjct: 988 PRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPAS--LWRKAVCLPSILY 1045
Query: 995 RLENLLVAIELKHLLSASFPEGAE 1018
RL LL A EL+ + GA+
Sbjct: 1046 RLHCLLTAEELRSQTAIDAGVGAQ 1069
Score = 76 (31.8 bits), Expect = 2.9e-95, Sum P(6) = 2.9e-95
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
K+IAD VEAL+G ++ G +AA FL +G++V
Sbjct: 1533 KSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1566
Score = 48 (22.0 bits), Expect = 6.3e-39, Sum P(4) = 6.3e-39
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 231 SAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVI 278
SA LP +I N LD +ED E E+ + P + + P I
Sbjct: 860 SAYCVLPLNIVEDSNTLDLDFKFMEDIEKSEARIGIPNTQYTKQNPFI 907
>UNIPROTKB|E9PU15 [details] [associations]
symbol:Dicer1 "Protein Dicer1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 RGD:1309381 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 IPI:IPI00365891
Ensembl:ENSRNOT00000014405 Uniprot:E9PU15
Length = 1908
Score = 337 (123.7 bits), Expect = 3.0e-95, Sum P(6) = 3.0e-95
Identities = 84/220 (38%), Positives = 123/220 (55%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ + F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 1659 INYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 1718
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1719 TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1778
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L VW++ + P++ KFS N+ +
Sbjct: 1779 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRS 1838
Query: 1382 PIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
P+RELLE+ +F ++ GK +V GK K
Sbjct: 1839 PVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1875
Score = 312 (114.9 bits), Expect = 3.0e-95, Sum P(6) = 3.0e-95
Identities = 86/270 (31%), Positives = 134/270 (49%)
Query: 428 IVFVNRIVTARALSYILQNL----KFLASWRCHFLVGVNAGL-----KSMSRNAMKS--I 476
I+FV R TA L+ +++ LA +F+ G G K M K +
Sbjct: 435 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEEV 494
Query: 477 LEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLV 536
L KFR+ E NLL+AT V EEG+DI C LV+RFDLP S++QS+GRAR P S Y L
Sbjct: 495 LRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVMLA 554
Query: 537 DSGNQRELDL-IKNFSKEEDRMNREI---MDRTSSDAFTCSEER------IYKVDSSGAC 586
D+ + + +K + E + + +D +D ++ + + D G
Sbjct: 555 DTDKIKSFEEDLKTYKAIEKILRNKCSKSVDGAEADVHAVVDDDDVFPPYVLRPDDGGPR 614
Query: 587 ISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHII-LPANAPIH-QIVGTPQ 644
++ + ++RYC++LP D F + PK + GT + LP N+P+ IVG P
Sbjct: 615 VTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPM 674
Query: 645 SSMEAAKKDACLKAIEDLHKLGALNDYLLP 674
+ A++ L E LHK+G L+++L+P
Sbjct: 675 GCVRLAERVVALICCEKLHKIGELDEHLMP 704
Score = 288 (106.4 bits), Expect = 3.0e-95, Sum P(6) = 3.0e-95
Identities = 83/239 (34%), Positives = 116/239 (48%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIR---KPQKSICIFLAPTVA 116
RKYQ+EL + A++ N IV L TG GKT IAVLL ELAH IR P +FL +
Sbjct: 35 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLSPHAKRTVFLVNSAN 94
Query: 117 LVQQQAKVIEESIGFKVRTFCGGSKRLKSHCD-WEKEIDQYEVLVMIPQILLYCLYHRFI 175
V QQ + KV + + W +E +++VL+M + L L + ++
Sbjct: 95 QVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTKHQVLIMTCYVALNVLKNGYL 154
Query: 176 KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQAN 235
+ I LL+FDECH A + +HPY +IMK PRI G+TAS + GK +
Sbjct: 155 SLSDINLLVFDECHLAIL--DHPYREIMK--LCDSCPSCPRILGLTASILNGKCDPDE-- 208
Query: 236 LPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAE 294
L + I LE +L + + D L+ + S P V GP D S Y +L E
Sbjct: 209 LEEKIQKLEKILKSGAETATDLVVLDRYTSQPCEIVVDCGP-FTDRSGLYERLLMELEE 266
Score = 173 (66.0 bits), Expect = 9.8e-76, Sum P(5) = 9.8e-76
Identities = 91/408 (22%), Positives = 171/408 (41%)
Query: 577 IYKVDSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHII-LPANAP 635
+ + D G ++ + ++RYC++LP D F + PK + GT + LP N+P
Sbjct: 605 VLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSP 664
Query: 636 IH-QIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLP--QEDNATEDEPMLFXXXXX 692
+ IVG P + A++ L E LHK+G L+++L+P +E E+E L
Sbjct: 665 LRASIVGPPMGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEET 724
Query: 693 XXXX---XXXXXXLHEMLVPAVLRQSWTKSQYPVRLNFYFMQF---IPDPAD----RIY- 741
+ +P LR+S+ K P L M +PD + ++Y
Sbjct: 725 SVPGRPGSTKRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYP 784
Query: 742 -----REFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGIMQAQQFQEMFLKVIL 795
R FG+ +P + H V + G ++ +L SG +QQ E+ + L
Sbjct: 785 PEDTTRCFGILTAKPIP-QIPHFPV--YTRSGEVTISIELKKSGFTLSQQMLELVTR--L 839
Query: 796 DRSEFNSEFVPLGKD--DYCESSSSTFYLLLPV-IFHKNS---VDWKIIRRCLSSPV-FG 848
+ F S + L K ++ + + + Y +LP+ + + +S +D+K + S G
Sbjct: 840 HQYIF-SHILRLEKPALEFQPAGAESAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIG 898
Query: 849 TPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKW-----FYLVTNIVFEKNGY 903
P +++ P L+ D +++++ ++ + FY V ++ +
Sbjct: 899 IPSTKYSKET-PFVFKLE---------DYQDAVIIPRYRNFDQPHRFY-VADVYTDLTPL 947
Query: 904 SPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKL 951
S + + + ++ + Y + L + QPLL NLL R L
Sbjct: 948 SKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHL 995
Score = 156 (60.0 bits), Expect = 3.0e-95, Sum P(6) = 3.0e-95
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 1023 MLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSN 1082
++L+ALT + F+LERLE+LGD+FLK+A+ +LF + EG L+ RS V+N N
Sbjct: 1286 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1345
Query: 1083 LLKLAARNNLQVYIRDQPFDP 1103
L +L + L + FDP
Sbjct: 1346 LYRLGKKQGLPSRMVVSIFDP 1366
Score = 106 (42.4 bits), Expect = 3.4e-57, Sum P(4) = 3.4e-57
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 1227 GLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNN 1286
GL+LQA + + G +RLE LGD+ L + IT+YL+ YP G+L+ +RS V+N
Sbjct: 1285 GLILQALTLSNASD-GFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSN 1343
Score = 98 (39.6 bits), Expect = 2.3e-56, Sum P(4) = 2.3e-56
Identities = 38/132 (28%), Positives = 55/132 (41%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
+RLE LGDA L Y + +HL+ G LT RS VNN+ LA + + Y +
Sbjct: 1688 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-- 1745
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
P F + K + + S+ R+ +D E K + D+
Sbjct: 1746 AVSPELFHVIDDFVQFQLEKNEMQGMDSELR-RSEEDEEKEEDIEV------PKAMGDIF 1798
Query: 1160 EALVGAFIDDSG 1171
E+L GA DSG
Sbjct: 1799 ESLAGAIYMDSG 1810
Score = 97 (39.2 bits), Expect = 3.0e-95, Sum P(6) = 3.0e-95
Identities = 74/311 (23%), Positives = 133/311 (42%)
Query: 722 PVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGI 780
P LNF + P P D R FG+ +P + H V + G ++ +L SG
Sbjct: 772 PDELNFRRRKLYP-PEDTT-RCFGILTAKPIP-QIPHFPV--YTRSGEVTISIELKKSGF 826
Query: 781 MQAQQFQEMFLKVILDRSEFNSEFVPLGKD--DYCESSSSTFYLLLPV-IFHKNS---VD 834
+QQ E+ + L + F S + L K ++ + + + Y +LP+ + + +S +D
Sbjct: 827 TLSQQMLELVTR--LHQYIF-SHILRLEKPALEFQPAGAESAYCVLPLNVVNDSSTLDID 883
Query: 835 WKIIRRCLSSPV-FGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKW---- 889
+K + S G P +++ P L+ D +++++ ++ +
Sbjct: 884 FKFMEDIEKSEARIGIPSTKYSKET-PFVFKLE---------DYQDAVIIPRYRNFDQPH 933
Query: 890 -FYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL-- 946
FY V ++ + S + + + ++ + Y + L + QPLL NLL
Sbjct: 934 RFY-VADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTP 992
Query: 947 -H-NRK-----LEDSESHELE-EYFDD---LPPELCQLKIIGFSKDIGSSLSLLPSIMHR 995
H N+K L +E + + E + L PELC + I S + LPSI++R
Sbjct: 993 RHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPAS--LWRKAVCLPSILYR 1050
Query: 996 LENLLVAIELK 1006
L LL A EL+
Sbjct: 1051 LHCLLTAEELR 1061
Score = 76 (31.8 bits), Expect = 3.0e-95, Sum P(6) = 3.0e-95
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
K+IAD VEAL+G ++ G +AA FL +G++V
Sbjct: 1545 KSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1578
Score = 50 (22.7 bits), Expect = 9.7e-20, Sum P(2) = 9.7e-20
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 1446 KLKAAGYVPKT-KSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQGGSS 1504
K+K+ KT K++E IL++ K + G E ++ V DD+VF + GG
Sbjct: 558 KIKSFEEDLKTYKAIEKILRN--KCSKSVDGA-EADVHAVVDDDDVFPPYVLRPDDGGPR 614
Query: 1505 CDIGS 1509
I +
Sbjct: 615 VTINT 619
Score = 47 (21.6 bits), Expect = 2.4e-37, Sum P(5) = 2.4e-37
Identities = 25/98 (25%), Positives = 41/98 (41%)
Query: 236 LPKSINSLENLLDAKVYSVEDAEDLESFVSS-PVVRVY---QYGPVINDTSSSYV-TCSE 290
LP + L LL A+ + A D V S P Y +G + S S++ TC+
Sbjct: 1044 LPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWKKSIDSKSFISTCNS 1103
Query: 291 QLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSM 328
LAE + Y + + ++ + + T+ HD M
Sbjct: 1104 SLAE--SDNYCKHSTTVVPENAAHQGATRPSLENHDQM 1139
Score = 42 (19.8 bits), Expect = 1.5e-89, Sum P(6) = 1.5e-89
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 853 SVDRKSLPSHGPLQLHNGWSSESDVENSLVY 883
SV+ K LP+ P +L + S + N L Y
Sbjct: 1140 SVNCKRLPAESPAKLQSEVSVDLTAINGLSY 1170
Score = 42 (19.8 bits), Expect = 7.7e-37, Sum P(5) = 7.7e-37
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 229 GA-SAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVI 278
GA SA LP ++ + + LD +ED E E+ + P + + P +
Sbjct: 861 GAESAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFV 911
Score = 39 (18.8 bits), Expect = 2.6e-75, Sum P(4) = 2.6e-75
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 707 LVPAVLRQSWTKSQYPVRLNFYFMQFIP 734
++P + R S K+ YP + N Q P
Sbjct: 1578 VLPVIKRTSRDKASYPAQENSSSQQKSP 1605
>UNIPROTKB|Q9UPY3 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070
"zygote asymmetric cell division" evidence=IEA] [GO:0019827 "stem
cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb
interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral
cortex development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045069
"regulation of viral genome replication" evidence=IEA] [GO:0045664
"regulation of neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0048713 "regulation of oligodendrocyte
differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis
of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013
"cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner
ear receptor cell development" evidence=IEA] [GO:0060576
"intestinal epithelial cell development" evidence=IEA] [GO:0070173
"regulation of enamel mineralization" evidence=IEA] [GO:0071335
"hair follicle cell proliferation" evidence=IEA] [GO:2000630
"positive regulation of miRNA metabolic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031054 "pre-miRNA processing"
evidence=IDA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IMP] [GO:0030422 "production
of siRNA involved in RNA interference" evidence=IDA] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0048812 "neuron projection morphogenesis" evidence=ISS]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISS] [GO:0031643 "positive regulation of myelination"
evidence=ISS] [GO:0021675 "nerve development" evidence=ISS]
[GO:0014040 "positive regulation of Schwann cell differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=ISS] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISS] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005829 GO:GO:0005524
GO:GO:0010070 GO:GO:0006915 GO:GO:0021987 GO:GO:0043066
GO:GO:0045664 EMBL:CH471061 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0010626 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:23405
HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W EMBL:AB028449 EMBL:HM595745
EMBL:AJ132261 EMBL:AB023145 EMBL:AL356017 EMBL:AL390254
EMBL:BC150287 IPI:IPI00219036 IPI:IPI00977554 RefSeq:NP_001182502.1
RefSeq:NP_001258211.1 RefSeq:NP_085124.2 RefSeq:NP_803187.1
UniGene:Hs.87889 PDB:2EB1 PDBsum:2EB1 ProteinModelPortal:Q9UPY3
SMR:Q9UPY3 DIP:DIP-29664N IntAct:Q9UPY3 MINT:MINT-1957525
STRING:Q9UPY3 PhosphoSite:Q9UPY3 DMDM:257051056 PaxDb:Q9UPY3
PRIDE:Q9UPY3 Ensembl:ENST00000343455 Ensembl:ENST00000393063
Ensembl:ENST00000526495 Ensembl:ENST00000527414
Ensembl:ENST00000541352 GeneID:23405 KEGG:hsa:23405 UCSC:uc001ydv.2
GeneCards:GC14M095552 HGNC:HGNC:17098 HPA:HPA000694 MIM:138800
MIM:601200 MIM:606241 neXtProt:NX_Q9UPY3 Orphanet:276399
Orphanet:99916 Orphanet:284343 PharmGKB:PA38437 HOVERGEN:HBG107811
InParanoid:Q9UPY3 OMA:FLEYDQE PhylomeDB:Q9UPY3 BRENDA:3.1.26.3
ChiTaRS:DICER1 EvolutionaryTrace:Q9UPY3 GenomeRNAi:23405
NextBio:45577 ArrayExpress:Q9UPY3 Bgee:Q9UPY3 CleanEx:HS_DICER1
Genevestigator:Q9UPY3 GermOnline:ENSG00000100697 GO:GO:0071335
GO:GO:0060576 GO:GO:0021889 GO:GO:0032290 GO:GO:0031643
GO:GO:0014040 GO:GO:0070173 GO:GO:0048713 Uniprot:Q9UPY3
Length = 1922
Score = 346 (126.9 bits), Expect = 3.6e-95, Sum P(6) = 3.6e-95
Identities = 85/220 (38%), Positives = 125/220 (56%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ ++F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 1673 INYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 1732
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1733 TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1792
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L TVW++ + P++ KFS N+ +
Sbjct: 1793 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRS 1852
Query: 1382 PIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
P+RELLE+ +F ++ GK +V GK K
Sbjct: 1853 PVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1889
Score = 318 (117.0 bits), Expect = 3.6e-95, Sum P(6) = 3.6e-95
Identities = 88/271 (32%), Positives = 137/271 (50%)
Query: 428 IVFVNRIVTARALSYILQNL----KFLASWRCHFLVGVNAGLKSMSRNAM--------KS 475
I+FV R TA L+ +++ LA +F+ G G K+ RN +
Sbjct: 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIG-KNQPRNKQMEAEFRKQEE 503
Query: 476 ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFL 535
+L KFR+ E NLL+AT + EEG+DI C LV+RFDLP S++QS+GRAR P S Y L
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563
Query: 536 VDSGN----QRELDLIKNFSKE-EDRMNREI-MDRTSSDAFTCSEE----RIYKVDSSGA 585
D+ + +L K K ++ ++ + T D ++ + + D G
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLRPDDGGP 623
Query: 586 CISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHII-LPANAPIH-QIVGTP 643
++ + ++RYC++LP D F + PK + GT + LP N+P+ IVG P
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683
Query: 644 QSSMEAAKKDACLKAIEDLHKLGALNDYLLP 674
S + A++ L E LHK+G L+D+L+P
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMP 714
Score = 273 (101.2 bits), Expect = 3.6e-95, Sum P(6) = 3.6e-95
Identities = 80/239 (33%), Positives = 116/239 (48%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIR---KPQKSICIFLAPTVA 116
RKYQ+EL + A++ N IV L TG GKT IAVLL EL++ IR +FL +
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSAN 104
Query: 117 LVQQQAKVIEESIGFKVRTFCGGSKRLKSHCD-WEKEIDQYEVLVMIPQILLYCLYHRFI 175
V QQ + KV + + W +E +++VL+M + L L + ++
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYL 164
Query: 176 KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQAN 235
+ I LL+FDECH A + +HPY +IMK + PRI G+TAS + GK +
Sbjct: 165 SLSDINLLVFDECHLAIL--DHPYREIMK--LCENCPSCPRILGLTASILNGKCDPEE-- 218
Query: 236 LPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAE 294
L + I LE +L + + D L+ + S P V GP D S Y +L E
Sbjct: 219 LEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGP-FTDRSGLYERLLMELEE 276
Score = 156 (60.0 bits), Expect = 3.6e-95, Sum P(6) = 3.6e-95
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 1023 MLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSN 1082
++L+ALT + F+LERLE+LGD+FLK+A+ +LF + EG L+ RS V+N N
Sbjct: 1296 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1355
Query: 1083 LLKLAARNNLQVYIRDQPFDP 1103
L +L + L + FDP
Sbjct: 1356 LYRLGKKKGLPSRMVVSIFDP 1376
Score = 106 (42.4 bits), Expect = 3.7e-56, Sum P(4) = 3.7e-56
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 1227 GLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNN 1286
GL+LQA + + G +RLE LGD+ L + IT+YL+ YP G+L+ +RS V+N
Sbjct: 1295 GLILQALTLSNASD-GFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSN 1353
Score = 102 (41.0 bits), Expect = 9.6e-56, Sum P(4) = 9.6e-56
Identities = 39/139 (28%), Positives = 57/139 (41%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
+RLE LGDA L Y + +HL+ G LT RS VNN+ LA + + Y +
Sbjct: 1702 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-- 1759
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
P F + K + + S+ R+ +D E K + D+
Sbjct: 1760 AVSPELFHVIDDFVQFQLEKNEMQGMDSELR-RSEEDEEKEEDIEV------PKAMGDIF 1812
Query: 1160 EALVGAFIDDSGFKAATAF 1178
E+L GA DSG T +
Sbjct: 1813 ESLAGAIYMDSGMSLETVW 1831
Score = 96 (38.9 bits), Expect = 3.6e-95, Sum P(6) = 3.6e-95
Identities = 74/311 (23%), Positives = 133/311 (42%)
Query: 722 PVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGI 780
P LNF + P P D R FG+ +P + H V + G ++ +L SG
Sbjct: 782 PDELNFRRRKLYP-PEDTT-RCFGILTAKPIP-QIPHFPV--YTRSGEVTISIELKKSGF 836
Query: 781 MQAQQFQEMFLKVILDRSEFNSEFVPLGKD--DYCESSSSTFYLLLPV-IFHKNS---VD 834
M + Q E+ + L + F S + L K ++ + + + Y +LP+ + + +S +D
Sbjct: 837 MLSLQMLELITR--LHQYIF-SHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDID 893
Query: 835 WKIIRRCLSSPV-FGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKW---- 889
+K + S G P +++ P L+ D +++++ ++ +
Sbjct: 894 FKFMEDIEKSEARIGIPSTKYTKET-PFVFKLE---------DYQDAVIIPRYRNFDQPH 943
Query: 890 -FYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL-- 946
FY V ++ + S + + + ++ + Y + L + QPLL NLL
Sbjct: 944 RFY-VADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTP 1002
Query: 947 -H-NRK-----LEDSESHELE-EYFDD---LPPELCQLKIIGFSKDIGSSLSLLPSIMHR 995
H N+K L +E + + E + L PELC + I S + LPSI++R
Sbjct: 1003 RHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPAS--LWRKAVCLPSILYR 1060
Query: 996 LENLLVAIELK 1006
L LL A EL+
Sbjct: 1061 LHCLLTAEELR 1071
Score = 76 (31.8 bits), Expect = 3.6e-95, Sum P(6) = 3.6e-95
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
K+IAD VEAL+G ++ G +AA FL +G++V
Sbjct: 1557 KSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1590
Score = 53 (23.7 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 1446 KLKAAGYVPKT-KSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQGGSS 1504
K+K+ KT K++E IL++ ++ + ET I+ V DD+VF + GG
Sbjct: 568 KIKSFEEDLKTYKAIEKILRNKC---SKSVDTGETDIDPVMDDDDVFPPYVLRPDDGGPR 624
Query: 1505 CDIGS 1509
I +
Sbjct: 625 VTINT 629
Score = 41 (19.5 bits), Expect = 2.8e-37, Sum P(5) = 2.8e-37
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 231 SAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVI 278
SA LP ++ + + LD +ED E E+ + P + + P +
Sbjct: 874 SAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFV 921
Score = 38 (18.4 bits), Expect = 3.7e-89, Sum P(6) = 3.7e-89
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 853 SVDRKSLPSHGPLQLHNGWSSESDVENSLVY 883
SV+ ++L S P +LH S++ N L Y
Sbjct: 1150 SVNCRTLLSESPGKLHVEVSADLTAINGLSY 1180
>UNIPROTKB|F1NJX0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0005524
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00818350 EMBL:AADN02003674
Ensembl:ENSGALT00000037569 ArrayExpress:F1NJX0 Uniprot:F1NJX0
Length = 1921
Score = 338 (124.0 bits), Expect = 5.5e-94, Sum P(6) = 5.5e-94
Identities = 84/220 (38%), Positives = 123/220 (55%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ + F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 1672 INYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 1731
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1732 TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRS 1791
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L VW++ + P++ KFS N+ +
Sbjct: 1792 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRS 1851
Query: 1382 PIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
P+RELLE+ +F ++ GK +V GK K
Sbjct: 1852 PVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1888
Score = 307 (113.1 bits), Expect = 5.5e-94, Sum P(6) = 5.5e-94
Identities = 85/271 (31%), Positives = 136/271 (50%)
Query: 428 IVFVNRIVTARALSYILQNL----KFLASWRCHFLVGVNAGLKSMSRNAM--------KS 475
I+FV R TA L+ +++ LA +F+ G G K+ RN +
Sbjct: 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIG-KNQPRNKQMEVEFRKQEE 503
Query: 476 ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFL 535
+L KFR+ E NLL+AT + EEG+DI C LV+RFDLP S++QS+GRAR P S Y L
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563
Query: 536 VDSGN----QRELDLIKNFSKE-EDRMNREI-MDRTSSDAFTCSEE----RIYKVDSSGA 585
D+ + +L K K ++ ++ + T ++ ++ + + D +
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDDDDVFPPYVLRTDENSP 623
Query: 586 CISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHII-LPANAPIH-QIVGTP 643
++ + ++RYC++LP D F + PK + T + LP N+P+ IVG P
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLPINSPLRASIVGPP 683
Query: 644 QSSMEAAKKDACLKAIEDLHKLGALNDYLLP 674
S A++ L E LHK+G L+D+L+P
Sbjct: 684 MSCARLAERVVALICCEKLHKIGELDDHLMP 714
Score = 287 (106.1 bits), Expect = 5.5e-94, Sum P(6) = 5.5e-94
Identities = 84/240 (35%), Positives = 118/240 (49%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIR---KPQKSICIFLAPTVA 116
RKYQ+EL + A++ N IV L TG GKT IAVLL EL++ IR +FL +
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSAN 104
Query: 117 LVQQQAKVIEESIGFKVRTFCGGSKRLKSHCD--WEKEIDQYEVLVMIPQILLYCLYHRF 174
V QQ + KV + + +S W +E +++VLVM + L L + +
Sbjct: 105 QVAQQVSAVRTHSDLKVGEY-SSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEY 163
Query: 175 IKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQA 234
+ + I LL+FDECH A +HPY +IMK D PRI G+TAS + GK A+
Sbjct: 164 LSLSNINLLVFDECHLAI--QDHPYREIMK--ICEDYPSCPRILGLTASILNGKCDPAE- 218
Query: 235 NLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAE 294
L + I LE +L + + D L+ + S P V GP D S Y +L E
Sbjct: 219 -LEEKIKKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPY-TDKSGLYGRLLRELDE 276
Score = 156 (60.0 bits), Expect = 5.5e-94, Sum P(6) = 5.5e-94
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 1023 MLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSN 1082
++L+ALT + F+LERLE+LGD+FLK+A+ +LF + EG L+ RS V+N N
Sbjct: 1297 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1356
Query: 1083 LLKLAARNNLQVYIRDQPFDP 1103
L +L + L + FDP
Sbjct: 1357 LYRLGKKKGLPSRMVVSIFDP 1377
Score = 106 (42.4 bits), Expect = 8.2e-56, Sum P(4) = 8.2e-56
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 1227 GLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNN 1286
GL+LQA + + G +RLE LGD+ L + IT+YL+ YP G+L+ +RS V+N
Sbjct: 1296 GLILQALTLSNASD-GFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSN 1354
Score = 98 (39.6 bits), Expect = 5.6e-55, Sum P(4) = 5.6e-55
Identities = 38/132 (28%), Positives = 55/132 (41%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
+RLE LGDA L Y + +HL+ G LT RS VNN+ LA + + Y +
Sbjct: 1701 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-- 1758
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
P F + K + + S+ R+ +D E K + D+
Sbjct: 1759 AVSPELFHVIDDFVQFQMEKNEMQGMDSELR-RSEEDEEKEEDIEV------PKAMGDIF 1811
Query: 1160 EALVGAFIDDSG 1171
E+L GA DSG
Sbjct: 1812 ESLAGAIYMDSG 1823
Score = 90 (36.7 bits), Expect = 5.5e-94, Sum P(6) = 5.5e-94
Identities = 75/311 (24%), Positives = 130/311 (41%)
Query: 722 PVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGI 780
P LNF + P P D R FG+ +P + H V + G ++ +L SG
Sbjct: 782 PDELNFRRRKLYP-PEDTT-RCFGILTAKPIP-QIPHFPV--YTRSGEVTISIELKKSGF 836
Query: 781 MQAQQFQEMFLKVILDRSEFNSEFVPLGKD--DYCESSSSTFYLLLPV-IFHKNS---VD 834
+ Q E+ + L + F S + L K ++ + + + Y +LP+ I +S +D
Sbjct: 837 TLSLQMLELITR--LHQYIF-SHILRLEKPALEFKPTEADSAYCVLPLNIVDDSSTLDID 893
Query: 835 WKIIRRCLSSPV-FGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKW---- 889
+K + S G P K +P L+ D +++++ ++ +
Sbjct: 894 FKFMEDIEKSEARTGIPSTQYT-KEMPFIFKLE---------DYQDAVIIPRYRNFDQPH 943
Query: 890 -FYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL-- 946
FY V ++ + S + + + ++ + Y + L + QPLL NLL
Sbjct: 944 RFY-VADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTP 1002
Query: 947 -H-NRK-----LEDSESHELE-EYFDD---LPPELCQLKIIGFSKDIGSSLSLLPSIMHR 995
H N+K L +E + + E + L PELC + I S + LPSI++R
Sbjct: 1003 RHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPAS--LWRKAVCLPSILYR 1060
Query: 996 LENLLVAIELK 1006
L LL A EL+
Sbjct: 1061 LHCLLTAEELR 1071
Score = 76 (31.8 bits), Expect = 5.5e-94, Sum P(6) = 5.5e-94
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
K+IAD VEAL+G ++ G +AA FL +G++V
Sbjct: 1556 KSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1589
Score = 42 (19.8 bits), Expect = 8.4e-78, Sum P(5) = 8.4e-78
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 944 NLLHNRKLE-DSESHELEEYFDDLPPE 969
NLL N KL+ D + E E+ LP E
Sbjct: 1407 NLLANGKLDYDDDDEEDEDLMWRLPKE 1433
Score = 41 (19.5 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 1446 KLKAAGYVPKT-KSLESILKSSPKSEARLIGYDETPINVVAADDNVF 1491
K+K+ KT K++E IL++ ++ + ET + DD+VF
Sbjct: 568 KIKSFEEDLKTYKAIEKILRNKC---SKSVDTSETETEPIVDDDDVF 611
Score = 37 (18.1 bits), Expect = 5.6e-37, Sum P(4) = 5.6e-37
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 231 SAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVI 278
SA LP +I + LD +ED E E+ P + + P I
Sbjct: 874 SAYCVLPLNIVDDSSTLDIDFKFMEDIEKSEARTGIPSTQYTKEMPFI 921
>UNIPROTKB|Q25BN1 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0030423 "targeting of mRNA
for destruction involved in RNA interference" evidence=ISS]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=ISS] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 CTD:23405 HOGENOM:HOG000001567 EMBL:AB253768
IPI:IPI00818350 RefSeq:NP_001035555.1 UniGene:Gga.33735
ProteinModelPortal:Q25BN1 SMR:Q25BN1 STRING:Q25BN1 GeneID:423437
KEGG:gga:423437 NextBio:20825910 Uniprot:Q25BN1
Length = 1921
Score = 338 (124.0 bits), Expect = 5.5e-94, Sum P(6) = 5.5e-94
Identities = 84/220 (38%), Positives = 123/220 (55%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ + F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 1672 INYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 1731
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1732 TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRS 1791
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L VW++ + P++ KFS N+ +
Sbjct: 1792 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRS 1851
Query: 1382 PIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
P+RELLE+ +F ++ GK +V GK K
Sbjct: 1852 PVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1888
Score = 307 (113.1 bits), Expect = 5.5e-94, Sum P(6) = 5.5e-94
Identities = 85/271 (31%), Positives = 136/271 (50%)
Query: 428 IVFVNRIVTARALSYILQNL----KFLASWRCHFLVGVNAGLKSMSRNAM--------KS 475
I+FV R TA L+ +++ LA +F+ G G K+ RN +
Sbjct: 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIG-KNQPRNKQMEVEFRKQEE 503
Query: 476 ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFL 535
+L KFR+ E NLL+AT + EEG+DI C LV+RFDLP S++QS+GRAR P S Y L
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563
Query: 536 VDSGN----QRELDLIKNFSKE-EDRMNREI-MDRTSSDAFTCSEE----RIYKVDSSGA 585
D+ + +L K K ++ ++ + T ++ ++ + + D +
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDDDDVFPPYVLRTDENSP 623
Query: 586 CISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHII-LPANAPIH-QIVGTP 643
++ + ++RYC++LP D F + PK + T + LP N+P+ IVG P
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLPINSPLRASIVGPP 683
Query: 644 QSSMEAAKKDACLKAIEDLHKLGALNDYLLP 674
S A++ L E LHK+G L+D+L+P
Sbjct: 684 MSCARLAERVVALICCEKLHKIGELDDHLMP 714
Score = 287 (106.1 bits), Expect = 5.5e-94, Sum P(6) = 5.5e-94
Identities = 84/240 (35%), Positives = 118/240 (49%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIR---KPQKSICIFLAPTVA 116
RKYQ+EL + A++ N IV L TG GKT IAVLL EL++ IR +FL +
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSAN 104
Query: 117 LVQQQAKVIEESIGFKVRTFCGGSKRLKSHCD--WEKEIDQYEVLVMIPQILLYCLYHRF 174
V QQ + KV + + +S W +E +++VLVM + L L + +
Sbjct: 105 QVAQQVSAVRTHSDLKVGEY-SSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEY 163
Query: 175 IKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQA 234
+ + I LL+FDECH A +HPY +IMK D PRI G+TAS + GK A+
Sbjct: 164 LSLSNINLLVFDECHLAI--QDHPYREIMK--ICEDYPSCPRILGLTASILNGKCDPAE- 218
Query: 235 NLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAE 294
L + I LE +L + + D L+ + S P V GP D S Y +L E
Sbjct: 219 -LEEKIKKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPY-TDKSGLYGRLLRELDE 276
Score = 156 (60.0 bits), Expect = 5.5e-94, Sum P(6) = 5.5e-94
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 1023 MLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSN 1082
++L+ALT + F+LERLE+LGD+FLK+A+ +LF + EG L+ RS V+N N
Sbjct: 1297 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1356
Query: 1083 LLKLAARNNLQVYIRDQPFDP 1103
L +L + L + FDP
Sbjct: 1357 LYRLGKKKGLPSRMVVSIFDP 1377
Score = 106 (42.4 bits), Expect = 8.2e-56, Sum P(4) = 8.2e-56
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 1227 GLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNN 1286
GL+LQA + + G +RLE LGD+ L + IT+YL+ YP G+L+ +RS V+N
Sbjct: 1296 GLILQALTLSNASD-GFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSN 1354
Score = 98 (39.6 bits), Expect = 5.6e-55, Sum P(4) = 5.6e-55
Identities = 38/132 (28%), Positives = 55/132 (41%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
+RLE LGDA L Y + +HL+ G LT RS VNN+ LA + + Y +
Sbjct: 1701 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-- 1758
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
P F + K + + S+ R+ +D E K + D+
Sbjct: 1759 AVSPELFHVIDDFVQFQMEKNEMQGMDSELR-RSEEDEEKEEDIEV------PKAMGDIF 1811
Query: 1160 EALVGAFIDDSG 1171
E+L GA DSG
Sbjct: 1812 ESLAGAIYMDSG 1823
Score = 90 (36.7 bits), Expect = 5.5e-94, Sum P(6) = 5.5e-94
Identities = 75/311 (24%), Positives = 130/311 (41%)
Query: 722 PVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGI 780
P LNF + P P D R FG+ +P + H V + G ++ +L SG
Sbjct: 782 PDELNFRRRKLYP-PEDTT-RCFGILTAKPIP-QIPHFPV--YTRSGEVTISIELKKSGF 836
Query: 781 MQAQQFQEMFLKVILDRSEFNSEFVPLGKD--DYCESSSSTFYLLLPV-IFHKNS---VD 834
+ Q E+ + L + F S + L K ++ + + + Y +LP+ I +S +D
Sbjct: 837 TLSLQMLELITR--LHQYIF-SHILRLEKPALEFKPTEADSAYCVLPLNIVDDSSTLDID 893
Query: 835 WKIIRRCLSSPV-FGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKW---- 889
+K + S G P K +P L+ D +++++ ++ +
Sbjct: 894 FKFMEDIEKSEARTGIPSTQYT-KEMPFIFKLE---------DYQDAVIIPRYRNFDQPH 943
Query: 890 -FYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL-- 946
FY V ++ + S + + + ++ + Y + L + QPLL NLL
Sbjct: 944 RFY-VADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTP 1002
Query: 947 -H-NRK-----LEDSESHELE-EYFDD---LPPELCQLKIIGFSKDIGSSLSLLPSIMHR 995
H N+K L +E + + E + L PELC + I S + LPSI++R
Sbjct: 1003 RHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPAS--LWRKAVCLPSILYR 1060
Query: 996 LENLLVAIELK 1006
L LL A EL+
Sbjct: 1061 LHCLLTAEELR 1071
Score = 76 (31.8 bits), Expect = 5.5e-94, Sum P(6) = 5.5e-94
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
K+IAD VEAL+G ++ G +AA FL +G++V
Sbjct: 1556 KSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1589
Score = 42 (19.8 bits), Expect = 8.4e-78, Sum P(5) = 8.4e-78
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 944 NLLHNRKLE-DSESHELEEYFDDLPPE 969
NLL N KL+ D + E E+ LP E
Sbjct: 1407 NLLANGKLDYDDDDEEDEDLMWRLPKE 1433
Score = 41 (19.5 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 1446 KLKAAGYVPKT-KSLESILKSSPKSEARLIGYDETPINVVAADDNVF 1491
K+K+ KT K++E IL++ ++ + ET + DD+VF
Sbjct: 568 KIKSFEEDLKTYKAIEKILRNKC---SKSVDTSETETEPIVDDDDVF 611
Score = 37 (18.1 bits), Expect = 5.6e-37, Sum P(4) = 5.6e-37
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 231 SAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVI 278
SA LP +I + LD +ED E E+ P + + P I
Sbjct: 874 SAYCVLPLNIVDDSSTLDIDFKFMEDIEKSEARTGIPSTQYTKEMPFI 921
>UNIPROTKB|E2RIN4 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000630 "positive regulation of miRNA
metabolic process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 CTD:23405 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:AAEX03005955 RefSeq:XP_868526.2
Ensembl:ENSCAFT00000028082 GeneID:480426 KEGG:cfa:480426
Uniprot:E2RIN4
Length = 1923
Score = 340 (124.7 bits), Expect = 6.9e-94, Sum P(6) = 6.9e-94
Identities = 84/220 (38%), Positives = 124/220 (56%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ ++F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 1674 INYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 1733
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1734 TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1793
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L VW++ + P++ KFS N+ +
Sbjct: 1794 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRS 1853
Query: 1382 PIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
P+RELLE+ +F ++ GK +V GK K
Sbjct: 1854 PVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1890
Score = 316 (116.3 bits), Expect = 6.9e-94, Sum P(6) = 6.9e-94
Identities = 87/271 (32%), Positives = 137/271 (50%)
Query: 428 IVFVNRIVTARALSYILQNL----KFLASWRCHFLVGVNAGLKSMSRNAM--------KS 475
I+FV R TA L+ +++ LA +F+ G G K+ RN +
Sbjct: 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIG-KNQPRNKQMEAEFRKQEE 503
Query: 476 ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFL 535
+L KFR+ E NLL+AT + EEG+DI C LV+RFDLP S++QS+GRAR P S Y L
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563
Query: 536 VDSGNQRELDL-IKNFSKEEDRMNREI---MDRTSSDAFTCSEER------IYKVDSSGA 585
D+ + + +K + E + + +D +D ++ + + D G
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIEPVVDDDDVFPPYVLRPDDGGP 623
Query: 586 CISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHII-LPANAPIH-QIVGTP 643
++ + ++RYC++LP D F + PK + GT + LP N+P+ IVG P
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683
Query: 644 QSSMEAAKKDACLKAIEDLHKLGALNDYLLP 674
S + A++ L E LHK+G L+D+L+P
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMP 714
Score = 274 (101.5 bits), Expect = 6.9e-94, Sum P(6) = 6.9e-94
Identities = 81/239 (33%), Positives = 116/239 (48%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIR---KPQKSICIFLAPTVA 116
RKYQ+EL + A++ N IV L TG GKT IAVLL EL++ IR +FL +
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSAN 104
Query: 117 LVQQQAKVIEESIGFKVRTFCGGSKRLK-SHCDWEKEIDQYEVLVMIPQILLYCLYHRFI 175
V QQ + KV + + W +E +++VLVM + L L + ++
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSNLEVNASWTKEKWNQEFTKHQVLVMTCYVALNVLKNGYL 164
Query: 176 KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQAN 235
+ I LL+FDECH A + +HPY +IMK + PRI G+TAS + GK +
Sbjct: 165 SLSDINLLVFDECHLAIL--DHPYREIMK--LCENCPSCPRILGLTASILNGKCDPEE-- 218
Query: 236 LPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAE 294
L + I LE +L + + D L+ + S P V GP D S Y +L E
Sbjct: 219 LEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGP-FTDRSGLYGRLLVELEE 276
Score = 156 (60.0 bits), Expect = 6.9e-94, Sum P(6) = 6.9e-94
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 1023 MLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSN 1082
++L+ALT + F+LERLE+LGD+FLK+A+ +LF + EG L+ RS V+N N
Sbjct: 1297 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1356
Query: 1083 LLKLAARNNLQVYIRDQPFDP 1103
L +L + L + FDP
Sbjct: 1357 LYRLGKKKGLPSRMVVSIFDP 1377
Score = 106 (42.4 bits), Expect = 1.6e-55, Sum P(4) = 1.6e-55
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 1227 GLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNN 1286
GL+LQA + + G +RLE LGD+ L + IT+YL+ YP G+L+ +RS V+N
Sbjct: 1296 GLILQALTLSNASD-GFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSN 1354
Score = 98 (39.6 bits), Expect = 1.1e-54, Sum P(4) = 1.1e-54
Identities = 38/132 (28%), Positives = 55/132 (41%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
+RLE LGDA L Y + +HL+ G LT RS VNN+ LA + + Y +
Sbjct: 1703 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-- 1760
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
P F + K + + S+ R+ +D E K + D+
Sbjct: 1761 AVSPELFHVIDDFVQFQLEKNEMQGMDSELR-RSEEDEEKEEDIEV------PKAMGDIF 1813
Query: 1160 EALVGAFIDDSG 1171
E+L GA DSG
Sbjct: 1814 ESLAGAIYMDSG 1825
Score = 91 (37.1 bits), Expect = 6.9e-94, Sum P(6) = 6.9e-94
Identities = 73/311 (23%), Positives = 132/311 (42%)
Query: 722 PVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGI 780
P LNF + P P D R FG+ +P + H V + G ++ +L SG
Sbjct: 782 PDELNFRRRKLYP-PEDTT-RCFGILTAKPIP-QIPHFPV--YTRSGEVTISIELKKSGF 836
Query: 781 MQAQQFQEMFLKVILDRSEFNSEFVPLGKD--DYCESSSSTFYLLLPV-IFHKNS---VD 834
+ Q E+ + L + F S + L K ++ + + + Y +LP+ + + +S +D
Sbjct: 837 TLSLQMLELITR--LHQYIF-SHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDID 893
Query: 835 WKIIRRCLSSPV-FGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKW---- 889
+K + S G P +++ P L+ D +++++ ++ +
Sbjct: 894 FKFMEDIEKSEARIGIPSTKYSKET-PFVFKLE---------DYQDAVIIPRYRNFDQPH 943
Query: 890 -FYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL-- 946
FY V ++ + S + + + ++ + Y + L + QPLL NLL
Sbjct: 944 RFY-VADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTP 1002
Query: 947 -H-NRK-----LEDSESHELE-EYFDD---LPPELCQLKIIGFSKDIGSSLSLLPSIMHR 995
H N+K L +E + + E + L PELC + I S + LPSI++R
Sbjct: 1003 RHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPAS--LWRKAVCLPSILYR 1060
Query: 996 LENLLVAIELK 1006
L LL A EL+
Sbjct: 1061 LHCLLTAEELR 1071
Score = 76 (31.8 bits), Expect = 6.9e-94, Sum P(6) = 6.9e-94
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
K+IAD VEAL+G ++ G +AA FL +G++V
Sbjct: 1558 KSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1591
Score = 53 (23.7 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 1446 KLKAAGYVPKT-KSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQGGSS 1504
K+K+ KT K++E IL++ ++ + ET I V DD+VF + GG
Sbjct: 568 KIKSFEEDLKTYKAIEKILRNKC---SKSVDTGETDIEPVVDDDDVFPPYVLRPDDGGPR 624
Query: 1505 CDIGS 1509
I +
Sbjct: 625 VTINT 629
Score = 41 (19.5 bits), Expect = 1.3e-37, Sum P(4) = 1.3e-37
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 231 SAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVI 278
SA LP ++ + + LD +ED E E+ + P + + P +
Sbjct: 874 SAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFV 921
>UNIPROTKB|B3DLA6 [details] [associations]
symbol:dicer1 "Endoribonuclease Dicer" species:8364
"Xenopus (Silurana) tropicalis" [GO:0016442 "RNA-induced silencing
complex" evidence=ISS] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EU338242 EMBL:BC167373 RefSeq:NP_001123390.2
UniGene:Str.39540 STRING:B3DLA6 GeneID:100170154 KEGG:xtr:100170154
Xenbase:XB-GENE-491114 Uniprot:B3DLA6
Length = 1893
Score = 344 (126.2 bits), Expect = 1.2e-93, Sum P(6) = 1.2e-93
Identities = 85/220 (38%), Positives = 123/220 (55%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ + F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 1644 INYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 1703
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1704 TDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1763
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L TVW + + P++ KFS N+ +
Sbjct: 1764 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKFSANVPRS 1823
Query: 1382 PIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
P+RELLE+ +F ++ GK +V GK K
Sbjct: 1824 PVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1860
Score = 308 (113.5 bits), Expect = 1.2e-93, Sum P(6) = 1.2e-93
Identities = 89/272 (32%), Positives = 136/272 (50%)
Query: 428 IVFVNRIVTARALSYILQNL----KFLASWRCHFLVGVNAGLKSMSRNAM--------KS 475
I+FV R TA L+ +++ LA +F+ G G K+ RN +
Sbjct: 436 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIG-KNQPRNKQMEVEFRKQEE 494
Query: 476 ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFL 535
+L KFR+ E NLL+AT + EEG+DI C LV+RFDLP S++QS+GRAR P S Y L
Sbjct: 495 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKGRARAPISNYIML 554
Query: 536 VDSGN----QRELDLIKNFSKE-EDRMNREI-MDRTSSDAFTCSEE----RIYKVDSSGA 585
DS + +L K K ++ ++ I T S+ +E + + D
Sbjct: 555 ADSDKIKAFEEDLKTYKAIEKILRNKCSKSIDCGNTESEPIVDDDEIFPPYVLRQDDGSP 614
Query: 586 CISAGYGVSLLHRYCSKLPHDEFFN--PKPKFYYFDDLGGTICHIILPANAPIHQ-IVGT 642
++ + ++RYC++LP D F + PK K F D G + LP N+P+ IVG
Sbjct: 615 RVTINTAIGHINRYCARLPSDPFTHLAPKCKTREFPD-GLYRSTLYLPINSPLRAPIVGP 673
Query: 643 PQSSMEAAKKDACLKAIEDLHKLGALNDYLLP 674
P + A + L + LH++G L+D+L+P
Sbjct: 674 PMNCGRLADRAVALICCKKLHEIGELDDHLMP 705
Score = 277 (102.6 bits), Expect = 1.2e-93, Sum P(6) = 1.2e-93
Identities = 86/242 (35%), Positives = 118/242 (48%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKP-QKSI--CIFLAPTVA 116
RKYQ+EL + A++ N IV L +G GKT IAVLL EL++ IR K+ +FL +
Sbjct: 35 RKYQVELLEAALDHNTIVCLNSGSGKTFIAVLLSKELSYQIRGDFSKNTKRTVFLVNSEK 94
Query: 117 LVQQQAKVIEESIGFKVRTFCGGSKRLKSHC----DWEKEIDQYEVLVMIPQILLYCLYH 172
V QQ + KV + S + K+ C W E + ++VLVM I L L
Sbjct: 95 QVSQQVSAVRTHTDLKVGEY---SDQEKTQCWAKERWYLEFETHQVLVMTCHIFLNVLKS 151
Query: 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASA 232
+ + I LL+FDECH A +HPY +IMK PRI G+TAS + GK
Sbjct: 152 GNVSLSNINLLVFDECHLAI--QDHPYREIMK--ICESCQPCPRILGLTASILNGK--CD 205
Query: 233 QANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQL 292
+L + I LE +L + + D L+ + S P V GP I D S Y +L
Sbjct: 206 PRDLEEKIQKLEEILRSNAETATDLVVLDRYASQPCEIVLDCGPYI-DKSGLYQRLLNEL 264
Query: 293 AE 294
E
Sbjct: 265 DE 266
Score = 150 (57.9 bits), Expect = 1.2e-93, Sum P(6) = 1.2e-93
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 1023 MLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSN 1082
++L+ALT + F+LERLE+LGD+FLK+A+ +LF + EG L+ RS V+N N
Sbjct: 1273 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1332
Query: 1083 LLKLAARNNLQVYIRDQPFDP 1103
L +L + + FDP
Sbjct: 1333 LYRLGKKKGSPSRMVVSIFDP 1353
Score = 106 (42.4 bits), Expect = 4.4e-54, Sum P(4) = 4.4e-54
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 1227 GLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNN 1286
GL+LQA + + G +RLE LGD+ L + IT+YL+ YP G+L+ +RS V+N
Sbjct: 1272 GLILQALTLSNASD-GFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSN 1330
Score = 103 (41.3 bits), Expect = 9.1e-54, Sum P(4) = 9.1e-54
Identities = 39/139 (28%), Positives = 57/139 (41%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
+RLE LGDA L Y + +HL+ G LT RS VNN+ LA + + Y +
Sbjct: 1673 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-- 1730
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
P F + K + + S+ R+ +D E K + D+
Sbjct: 1731 AISPELFHVIDDFVQFQLEKNEMQGMDSELR-RSEEDEEKEEDIEV------PKAMGDIF 1783
Query: 1160 EALVGAFIDDSGFKAATAF 1178
E+L GA DSG T +
Sbjct: 1784 ESLAGAIYMDSGMSLETVW 1802
Score = 89 (36.4 bits), Expect = 1.2e-93, Sum P(6) = 1.2e-93
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQ-VTNICISSKSFLPLSASLD 1211
K+IAD VEAL+G ++ G +AA FL +G++V E + VTN + S S +++ D
Sbjct: 1531 KSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPEVRKLVTNTNVISASSSYQNSTRD 1590
Query: 1212 MATL 1215
TL
Sbjct: 1591 NCTL 1594
Score = 82 (33.9 bits), Expect = 1.2e-93, Sum P(6) = 1.2e-93
Identities = 72/308 (23%), Positives = 124/308 (40%)
Query: 722 PVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGI 780
P LNF + P P D R FG+ +P + H V + G ++ +L SG
Sbjct: 773 PDELNFRRRKLYP-PEDTT-RCFGILTAKPIP-QIPHFPV--YTRSGEVTISIELKKSGF 827
Query: 781 MQAQQFQEMFLKVILDRSEFNSEFVPLGKD--DYCESSSSTFYLLLPVIFHKNS----VD 834
+++ L L + F S + L K ++ + + Y +LP+ +S +D
Sbjct: 828 --TLNLEQLELITRLHQYIF-SHILRLEKPALEFKPTVADCAYCVLPLNVVNDSGTLDID 884
Query: 835 WKIIRRCLSSPV-FGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKK--WFY 891
+K + S G P +S P L+ + + ++Y + FY
Sbjct: 885 FKFVEDIEKSEARTGIPNTQYSAES-PFIFKLE---DYQDAVIIPRQVIYRNFDQPHRFY 940
Query: 892 LVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL---H- 947
V ++ + S + + + ++ + Y + L + QPLL NLL H
Sbjct: 941 -VADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHL 999
Query: 948 NRK-----LEDSESHELE-EYFDD---LPPELCQLKIIGFSKDIGSSLSLLPSIMHRLEN 998
N+K L +E + + E + L PELC + + S + LPSI++RL
Sbjct: 1000 NQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPVPAS--LWRKAVCLPSILYRLHC 1057
Query: 999 LLVAIELK 1006
LL A EL+
Sbjct: 1058 LLTAEELR 1065
Score = 37 (18.1 bits), Expect = 2.6e-74, Sum P(4) = 2.6e-74
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 906 YKDSDSSSHVDHLISSY 922
++ D+ +DHLIS +
Sbjct: 1621 FEHPDAEKTLDHLISGF 1637
Score = 37 (18.1 bits), Expect = 2.2e-38, Sum P(4) = 2.2e-38
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 152 EIDQYEVLVMIPQILLYCLY---HRF 174
+++ Y+ V+IP+ ++Y + HRF
Sbjct: 914 KLEDYQDAVIIPRQVIYRNFDQPHRF 939
>UNIPROTKB|F1NP11 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0010070 "zygote asymmetric cell division"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0043066 GO:GO:0051225 GO:GO:0045595
Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0000122 GO:GO:0051726
GO:GO:0003725 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0008026
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 OMA:FLEYDQE GO:GO:0071335
GO:GO:0031643 GO:GO:0070173 EMBL:AADN02003674 IPI:IPI00603674
Ensembl:ENSGALT00000017910 ArrayExpress:F1NP11 Uniprot:F1NP11
Length = 1925
Score = 338 (124.0 bits), Expect = 2.5e-92, Sum P(6) = 2.5e-92
Identities = 84/220 (38%), Positives = 123/220 (55%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ + F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 1676 INYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 1735
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1736 TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRS 1795
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L VW++ + P++ KFS N+ +
Sbjct: 1796 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRS 1855
Query: 1382 PIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
P+RELLE+ +F ++ GK +V GK K
Sbjct: 1856 PVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1892
Score = 296 (109.3 bits), Expect = 2.5e-92, Sum P(6) = 2.5e-92
Identities = 86/274 (31%), Positives = 136/274 (49%)
Query: 428 IVFVNRIVTARALSYILQNL----KFLASWRCHFLVGVNAGLKSMSRNAM--------KS 475
I+FV R TA L+ +++ LA +F+ G G K+ RN +
Sbjct: 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIG-KNQPRNKQMEVEFRKQEE 503
Query: 476 ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFL 535
+L KFR+ E NLL+AT + EEG+DI C LV+RFDLP S++QS+GRAR P S Y L
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563
Query: 536 VDSGN----QRELDLIKNFSKE-EDRMNREI-MDRTSSDAFTCSEE----RIYKVDSSGA 585
D+ + +L K K ++ ++ + T ++ ++ + + D +
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDDDDVFPPYVLRTDENSP 623
Query: 586 CISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHII-LPANAPIH-QIVGTP 643
++ + ++RYC++LP D F + PK + T + LP N+P+ IVG P
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLPINSPLRASIVGPP 683
Query: 644 QSSMEAAKKDACLKAIEDLHK---LGALNDYLLP 674
S A++ L E LHK LG L+D+L+P
Sbjct: 684 MSCARLAERVVALICCEKLHKIEYLGELDDHLMP 717
Score = 287 (106.1 bits), Expect = 2.5e-92, Sum P(6) = 2.5e-92
Identities = 84/240 (35%), Positives = 118/240 (49%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIR---KPQKSICIFLAPTVA 116
RKYQ+EL + A++ N IV L TG GKT IAVLL EL++ IR +FL +
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSAN 104
Query: 117 LVQQQAKVIEESIGFKVRTFCGGSKRLKSHCD--WEKEIDQYEVLVMIPQILLYCLYHRF 174
V QQ + KV + + +S W +E +++VLVM + L L + +
Sbjct: 105 QVAQQVSAVRTHSDLKVGEY-SSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEY 163
Query: 175 IKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQA 234
+ + I LL+FDECH A +HPY +IMK D PRI G+TAS + GK A+
Sbjct: 164 LSLSNINLLVFDECHLAI--QDHPYREIMK--ICEDYPSCPRILGLTASILNGKCDPAE- 218
Query: 235 NLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAE 294
L + I LE +L + + D L+ + S P V GP D S Y +L E
Sbjct: 219 -LEEKIKKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPY-TDKSGLYGRLLRELDE 276
Score = 156 (60.0 bits), Expect = 2.5e-92, Sum P(6) = 2.5e-92
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 1023 MLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSN 1082
++L+ALT + F+LERLE+LGD+FLK+A+ +LF + EG L+ RS V+N N
Sbjct: 1301 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1360
Query: 1083 LLKLAARNNLQVYIRDQPFDP 1103
L +L + L + FDP
Sbjct: 1361 LYRLGKKKGLPSRMVVSIFDP 1381
Score = 106 (42.4 bits), Expect = 4.2e-54, Sum P(4) = 4.2e-54
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 1227 GLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNN 1286
GL+LQA + + G +RLE LGD+ L + IT+YL+ YP G+L+ +RS V+N
Sbjct: 1300 GLILQALTLSNASD-GFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSN 1358
Score = 98 (39.6 bits), Expect = 2.8e-53, Sum P(4) = 2.8e-53
Identities = 38/132 (28%), Positives = 55/132 (41%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
+RLE LGDA L Y + +HL+ G LT RS VNN+ LA + + Y +
Sbjct: 1705 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-- 1762
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
P F + K + + S+ R+ +D E K + D+
Sbjct: 1763 AVSPELFHVIDDFVQFQMEKNEMQGMDSELR-RSEEDEEKEEDIEV------PKAMGDIF 1815
Query: 1160 EALVGAFIDDSG 1171
E+L GA DSG
Sbjct: 1816 ESLAGAIYMDSG 1827
Score = 85 (35.0 bits), Expect = 2.5e-92, Sum P(6) = 2.5e-92
Identities = 73/312 (23%), Positives = 128/312 (41%)
Query: 722 PVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGI 780
P LNF + P P D R FG+ +P + H V + G ++ +L SG
Sbjct: 785 PDELNFRRRKLYP-PEDTT-RCFGILTAKPIP-QIPHFPV--YTRSGEVTISIELKKSGF 839
Query: 781 MQAQQFQEMFLKVILDRSEFNSEFVPLGKD--DYCESSSSTFYLLLPVIFHKNS-----V 833
+ Q E+ + L + F S + L K ++ + + + Y +LP+ + +
Sbjct: 840 TLSLQMLELITR--LHQYIF-SHILRLEKPALEFKPTEADSAYCVLPLNIEVDDSSTLDI 896
Query: 834 DWKIIRRCLSSPV-FGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKW--- 889
D+K + S G P K +P L+ D +++++ ++ +
Sbjct: 897 DFKFMEDIEKSEARTGIPSTQYT-KEMPFIFKLE---------DYQDAVIIPRYRNFDQP 946
Query: 890 --FYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL- 946
FY V ++ + S + + + ++ + Y + L + QPLL NLL
Sbjct: 947 HRFY-VADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLT 1005
Query: 947 --H-NRK-----LEDSESHELE-EYFDD---LPPELCQLKIIGFSKDIGSSLSLLPSIMH 994
H N+K L +E + + E + L PELC + I S + LPSI++
Sbjct: 1006 PRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPAS--LWRKAVCLPSILY 1063
Query: 995 RLENLLVAIELK 1006
RL LL A EL+
Sbjct: 1064 RLHCLLTAEELR 1075
Score = 76 (31.8 bits), Expect = 2.5e-92, Sum P(6) = 2.5e-92
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
K+IAD VEAL+G ++ G +AA FL +G++V
Sbjct: 1560 KSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1593
Score = 42 (19.8 bits), Expect = 1.2e-76, Sum P(5) = 1.2e-76
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 944 NLLHNRKLE-DSESHELEEYFDDLPPE 969
NLL N KL+ D + E E+ LP E
Sbjct: 1411 NLLANGKLDYDDDDEEDEDLMWRLPKE 1437
Score = 41 (19.5 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 1446 KLKAAGYVPKT-KSLESILKSSPKSEARLIGYDETPINVVAADDNVF 1491
K+K+ KT K++E IL++ ++ + ET + DD+VF
Sbjct: 568 KIKSFEEDLKTYKAIEKILRNKC---SKSVDTSETETEPIVDDDDVF 611
>UNIPROTKB|Q6TUI4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0016442 "RNA-induced
silencing complex" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HSSP:P66666 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AY386968 IPI:IPI00715122
RefSeq:NP_976235.1 UniGene:Bt.45343 UniGene:Bt.89150
ProteinModelPortal:Q6TUI4 SMR:Q6TUI4 STRING:Q6TUI4 PRIDE:Q6TUI4
GeneID:337871 KEGG:bta:337871 CTD:23405 HOGENOM:HOG000001567
NextBio:20812451 Uniprot:Q6TUI4
Length = 1923
Score = 350 (128.3 bits), Expect = 9.1e-92, Sum P(6) = 9.1e-92
Identities = 85/219 (38%), Positives = 126/219 (57%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ ++F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 1674 INYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 1733
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1734 TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1793
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L TVW++ + P++ KFS N+ +
Sbjct: 1794 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRS 1853
Query: 1382 PIRELLELCNSYDLDLQFPSLKK-GGKFLAEAKVTGKDK 1419
P+RELLE+ ++ P+ + GK +V GK K
Sbjct: 1854 PVRELLEM--EPEITKFSPAERTYDGKVRVTVEVVGKGK 1890
Score = 309 (113.8 bits), Expect = 9.1e-92, Sum P(6) = 9.1e-92
Identities = 86/270 (31%), Positives = 136/270 (50%)
Query: 428 IVFVNRIVTARALSYILQNL----KFLASWRCHFLVGVNAGLKSMSRNAM--------KS 475
I+FV R TA L+ +++ LA +F+ G G K+ RN +
Sbjct: 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIG-KNQPRNKQMEAEFRKQEE 503
Query: 476 ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFL 535
+L KFR+ E NLL+AT + EEG+DI C LV+RFDLP S++QS+GRAR P S Y L
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML 563
Query: 536 VDSGNQRELDL-IKNFSKEEDRMNREI---MDRTSSDAF-TCSEERIYKV----DSSGAC 586
D+ + + +K + E + + +D +D ++ ++ G
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDDDDVFPPYVLRPEDGPR 623
Query: 587 ISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHII-LPANAPIH-QIVGTPQ 644
++ + ++RYC++LP D F + PK + GT + LP N+P+ IVG P
Sbjct: 624 VTINTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPM 683
Query: 645 SSMEAAKKDACLKAIEDLHKLGALNDYLLP 674
S + A++ L E LHK+G L+D+L+P
Sbjct: 684 SCIRLAERVVALICCEKLHKIGELDDHLMP 713
Score = 273 (101.2 bits), Expect = 9.1e-92, Sum P(6) = 9.1e-92
Identities = 80/239 (33%), Positives = 116/239 (48%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIR---KPQKSICIFLAPTVA 116
RKYQ+EL + A++ N IV L TG GKT IAVLL EL++ IR +FL +
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSAN 104
Query: 117 LVQQQAKVIEESIGFKVRTFCGGSKRLK-SHCDWEKEIDQYEVLVMIPQILLYCLYHRFI 175
V QQ + KV + + W +E +++VL+M + L L + ++
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLIMTCYVALNVLKNGYL 164
Query: 176 KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQAN 235
+ I LL+FDECH A + +HPY +IMK + PRI G+TAS + GK +
Sbjct: 165 SLSDINLLVFDECHLAIL--DHPYREIMK--LCENCPSCPRILGLTASILNGKCDPEE-- 218
Query: 236 LPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAE 294
L + I LE +L + + D L+ + S P V GP D S Y +L E
Sbjct: 219 LEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGP-FTDRSGLYERLLMELEE 276
Score = 133 (51.9 bits), Expect = 9.1e-92, Sum P(6) = 9.1e-92
Identities = 33/82 (40%), Positives = 47/82 (57%)
Query: 1023 MLLKALTTEKCQERFSLERLEILGDAFLKYAVGR-HLFLLHDTVDEGELTRRRSNAVNNS 1081
++L+ALT + F+LERLE+LGD+FLK+A+ L L EG L+ RS V+N
Sbjct: 1296 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSKKVSNC 1355
Query: 1082 NLLKLAARNNLQVYIRDQPFDP 1103
NL +L + L + FDP
Sbjct: 1356 NLYRLGKKKGLPSRMVVSIFDP 1377
Score = 102 (41.0 bits), Expect = 3.0e-54, Sum P(4) = 3.0e-54
Identities = 39/139 (28%), Positives = 57/139 (41%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
+RLE LGDA L Y + +HL+ G LT RS VNN+ LA + + Y +
Sbjct: 1703 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-- 1760
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
P F + K + + S+ R+ +D E K + D+
Sbjct: 1761 AVSPELFHVIDDFVQFQLEKNEMQGMDSELR-RSEEDEEKEEDIEV------PKAMGDIF 1813
Query: 1160 EALVGAFIDDSGFKAATAF 1178
E+L GA DSG T +
Sbjct: 1814 ESLAGAIYMDSGMSLETVW 1832
Score = 91 (37.1 bits), Expect = 9.1e-92, Sum P(6) = 9.1e-92
Identities = 73/311 (23%), Positives = 132/311 (42%)
Query: 722 PVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGI 780
P LNF + P P D R FG+ +P + H V + G ++ +L SG
Sbjct: 781 PDELNFRRRKLYP-PEDTT-RCFGILTAKPIP-QIPHFPV--YTRSGEVTISIELKKSGF 835
Query: 781 MQAQQFQEMFLKVILDRSEFNSEFVPLGKD--DYCESSSSTFYLLLPV-IFHKNS---VD 834
+ Q E+ + L + F S + L K ++ + + + Y +LP+ + + +S +D
Sbjct: 836 TLSLQMLELITR--LHQYIF-SHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDID 892
Query: 835 WKIIRRCLSSPV-FGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKW---- 889
+K + S G P +++ P L+ D +++++ ++ +
Sbjct: 893 FKFMEDIEKSEARIGIPSTKYSKET-PFVFKLE---------DYQDAVIIPRYRNFDQPH 942
Query: 890 -FYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL-- 946
FY V ++ + S + + + ++ + Y + L + QPLL NLL
Sbjct: 943 RFY-VADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTP 1001
Query: 947 -H-NRK-----LEDSESHELE-EYFDD---LPPELCQLKIIGFSKDIGSSLSLLPSIMHR 995
H N+K L +E + + E + L PELC + I S + LPSI++R
Sbjct: 1002 RHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPAS--LWRKAVCLPSILYR 1059
Query: 996 LENLLVAIELK 1006
L LL A EL+
Sbjct: 1060 LHCLLTAEELR 1070
Score = 76 (31.8 bits), Expect = 9.1e-92, Sum P(6) = 9.1e-92
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
K+IAD VEAL+G ++ G +AA FL +G++V
Sbjct: 1558 KSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1591
Score = 69 (29.3 bits), Expect = 7.9e-51, Sum P(4) = 7.9e-51
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 1227 GLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSY-LYSVYPKLKPGQLTDLRSMLVN 1285
GL+LQA + + G +RLE LGD+ L + IT+ L ++ G+L+ +RS V+
Sbjct: 1295 GLILQALTLSNASD-GFNLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSKKVS 1353
Query: 1286 N 1286
N
Sbjct: 1354 N 1354
Score = 41 (19.5 bits), Expect = 2.7e-36, Sum P(4) = 2.7e-36
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 231 SAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVI 278
SA LP ++ + + LD +ED E E+ + P + + P +
Sbjct: 873 SAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFV 920
>UNIPROTKB|F1MCQ5 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00715122 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:DAAA02053090
Ensembl:ENSBTAT00000017080 ArrayExpress:F1MCQ5 Uniprot:F1MCQ5
Length = 1920
Score = 346 (126.9 bits), Expect = 1.9e-91, Sum P(6) = 1.9e-91
Identities = 85/220 (38%), Positives = 125/220 (56%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ ++F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 1671 INYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 1730
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 1731 TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1790
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L TVW++ + P++ KFS N+ +
Sbjct: 1791 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRS 1850
Query: 1382 PIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
P+RELLE+ +F ++ GK +V GK K
Sbjct: 1851 PVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 1887
Score = 309 (113.8 bits), Expect = 1.9e-91, Sum P(6) = 1.9e-91
Identities = 86/270 (31%), Positives = 136/270 (50%)
Query: 428 IVFVNRIVTARALSYILQNL----KFLASWRCHFLVGVNAGLKSMSRNAM--------KS 475
I+FV R TA L+ +++ LA +F+ G G K+ RN +
Sbjct: 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIG-KNQPRNKQMEAEFRKQEE 503
Query: 476 ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFL 535
+L KFR+ E NLL+AT + EEG+DI C LV+RFDLP S++QS+GRAR P S Y L
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML 563
Query: 536 VDSGNQRELDL-IKNFSKEEDRMNREI---MDRTSSDAF-TCSEERIYKV----DSSGAC 586
D+ + + +K + E + + +D +D ++ ++ G
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDDDDVFPPYVLRPEDGPR 623
Query: 587 ISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHII-LPANAPIH-QIVGTPQ 644
++ + ++RYC++LP D F + PK + GT + LP N+P+ IVG P
Sbjct: 624 VTINTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPM 683
Query: 645 SSMEAAKKDACLKAIEDLHKLGALNDYLLP 674
S + A++ L E LHK+G L+D+L+P
Sbjct: 684 SCIRLAERVVALICCEKLHKIGELDDHLMP 713
Score = 274 (101.5 bits), Expect = 1.9e-91, Sum P(6) = 1.9e-91
Identities = 81/239 (33%), Positives = 116/239 (48%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIR---KPQKSICIFLAPTVA 116
RKYQ+EL + A++ N IV L TG GKT IAVLL EL++ IR +FL +
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSAN 104
Query: 117 LVQQQAKVIEESIGFKVRTFCGGSKRLK-SHCDWEKEIDQYEVLVMIPQILLYCLYHRFI 175
V QQ + KV + + W +E +++VLVM + L L + ++
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLVMTCYVALNVLKNGYL 164
Query: 176 KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQAN 235
+ I LL+FDECH A + +HPY +IMK + PRI G+TAS + GK +
Sbjct: 165 SLSDINLLVFDECHLAIL--DHPYREIMK--LCENCPSCPRILGLTASILNGKCDPEE-- 218
Query: 236 LPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAE 294
L + I LE +L + + D L+ + S P V GP D S Y +L E
Sbjct: 219 LEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGP-FTDRSGLYERLLMELEE 276
Score = 133 (51.9 bits), Expect = 1.9e-91, Sum P(6) = 1.9e-91
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 1023 MLLKALTTEKCQERFSLERLEILGDAFLKYAVGR--HLFLLHDTVDEGELTRRRSNAVNN 1080
++L+ALT + F+LERLE+LGD+FLK+A+ +LH EG L+ RS V+N
Sbjct: 1296 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTISSALILH----EGRLSYMRSKKVSN 1351
Query: 1081 SNLLKLAARNNLQVYIRDQPFDP 1103
NL +L + L + FDP
Sbjct: 1352 CNLYRLGKKKGLPSRMVVSIFDP 1374
Score = 102 (41.0 bits), Expect = 2.3e-54, Sum P(4) = 2.3e-54
Identities = 39/139 (28%), Positives = 57/139 (41%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQ 1099
+RLE LGDA L Y + +HL+ G LT RS VNN+ LA + + Y +
Sbjct: 1700 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK-- 1757
Query: 1100 PFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVV 1159
P F + K + + S+ R+ +D E K + D+
Sbjct: 1758 AVSPELFHVIDDFVQFQLEKNEMQGMDSELR-RSEEDEEKEEDIEV------PKAMGDIF 1810
Query: 1160 EALVGAFIDDSGFKAATAF 1178
E+L GA DSG T +
Sbjct: 1811 ESLAGAIYMDSGMSLETVW 1829
Score = 91 (37.1 bits), Expect = 1.9e-91, Sum P(6) = 1.9e-91
Identities = 73/311 (23%), Positives = 132/311 (42%)
Query: 722 PVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGI 780
P LNF + P P D R FG+ +P + H V + G ++ +L SG
Sbjct: 781 PDELNFRRRKLYP-PEDTT-RCFGILTAKPIP-QIPHFPV--YTRSGEVTISIELKKSGF 835
Query: 781 MQAQQFQEMFLKVILDRSEFNSEFVPLGKD--DYCESSSSTFYLLLPV-IFHKNS---VD 834
+ Q E+ + L + F S + L K ++ + + + Y +LP+ + + +S +D
Sbjct: 836 TLSLQMLELITR--LHQYIF-SHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDID 892
Query: 835 WKIIRRCLSSPV-FGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKW---- 889
+K + S G P +++ P L+ D +++++ ++ +
Sbjct: 893 FKFMEDIEKSEARIGIPSTKYSKET-PFVFKLE---------DYQDAVIIPRYRNFDQPH 942
Query: 890 -FYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL-- 946
FY V ++ + S + + + ++ + Y + L + QPLL NLL
Sbjct: 943 RFY-VADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTP 1001
Query: 947 -H-NRK-----LEDSESHELE-EYFDD---LPPELCQLKIIGFSKDIGSSLSLLPSIMHR 995
H N+K L +E + + E + L PELC + I S + LPSI++R
Sbjct: 1002 RHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPAS--LWRKAVCLPSILYR 1059
Query: 996 LENLLVAIELK 1006
L LL A EL+
Sbjct: 1060 LHCLLTAEELR 1070
Score = 76 (31.8 bits), Expect = 1.9e-91, Sum P(6) = 1.9e-91
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
K+IAD VEAL+G ++ G +AA FL +G++V
Sbjct: 1555 KSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1588
Score = 70 (29.7 bits), Expect = 4.8e-51, Sum P(4) = 4.8e-51
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 1227 GLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNN 1286
GL+LQA + + G +RLE LGD+ L + IT+ ++ L G+L+ +RS V+N
Sbjct: 1295 GLILQALTLSNASD-GFNLERLEMLGDSFLKHAITTISSALI--LHEGRLSYMRSKKVSN 1351
Score = 41 (19.5 bits), Expect = 7.0e-36, Sum P(4) = 7.0e-36
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 231 SAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVI 278
SA LP ++ + + LD +ED E E+ + P + + P +
Sbjct: 873 SAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFV 920
>POMBASE|SPCC188.13c [details] [associations]
symbol:dcr1 "dicer" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005720 "nuclear heterochromatin"
evidence=IC] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006396 "RNA processing" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0031048 "chromatin silencing by small RNA"
evidence=TAS] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:0035389 "establishment of chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051570 "regulation of histone H3-K9
methylation" evidence=IMP] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] [GO:0090052 "regulation of chromatin
silencing at centromere" evidence=IMP] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR006935
Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 Pfam:PF04851 PROSITE:PS00517
PROSITE:PS50142 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490
SMART:SM00535 PomBase:SPCC188.13c GO:GO:0005829 GO:GO:0005524
GO:GO:0007059 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 GO:GO:0003723
GO:GO:0007049 GO:GO:0004386 GO:GO:0031048 GO:GO:0090052
GO:GO:0051570 GO:GO:0030422 GO:GO:0004540 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0051983 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PIR:T39130 RefSeq:NP_588215.2 PDB:2L6M PDBsum:2L6M
ProteinModelPortal:Q09884 STRING:Q09884 EnsemblFungi:SPCC188.13c.1
GeneID:2538930 KEGG:spo:SPCC188.13c OMA:RMCLICN OrthoDB:EOG4PRWZS
NextBio:20800107 GO:GO:0035389 Uniprot:Q09884
Length = 1374
Score = 359 (131.4 bits), Expect = 1.6e-81, Sum P(3) = 1.6e-81
Identities = 119/431 (27%), Positives = 207/431 (48%)
Query: 270 RVYQYGPVINDTSSSYVTCSEQLAE---IKREQYISALSRKL----HDH--QSLRNTTKQ 320
R+YQ+ + + S ++V +LA+ + E Y+ S KL D + T +
Sbjct: 199 RLYQWEQLFD--SKAHVVSENELADYFCLPEESYVM-YSNKLVVPPSDSIIKKCEETLQG 255
Query: 321 LNRLHDSMKFCLE---NLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQA 377
+ ++K L ++G+ L+ ET R + +A G + D A
Sbjct: 256 CKLISRAVKTALAETIDMGLWFGEQVWLYLVDFVETKRLKK-KALGKQLSDDE-ELAIDR 313
Query: 378 SEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGIL-STFRLQQHMKCIVFVNRIVT 436
++F + + + + I V + K+ +L+ +L +T+R ++ ++FV R T
Sbjct: 314 LKIFVEDWKNNKYSDNGPRIPVFDSTDVTDKVFKLLELLKATYRKSDSVRTVIFVERKAT 373
Query: 437 ARALSYILQNLKFLASWRCHFLVG---VNAGLKSMSRNAMKSILEKFRSGELNLLVATKV 493
A LS ++ L L + R H +G + G SM+ K L KF++G+ N+L+AT V
Sbjct: 374 AFTLSLFMKTLN-LPNIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTGKYNVLIATAV 432
Query: 494 GEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKE 553
EEG+D+ +C LVIRF++ TV ++QSRGRAR S++ + N EL + + E
Sbjct: 433 AEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMASKFLIFL---NTEELLIHERILHE 489
Query: 554 EDRMNREIMDRTSS---DAFTCSE-ERI-----YKVDSSGACISAGYGVSLLHRYCSKLP 604
E + + + ++S D+ C E ER+ Y+V +GA ++ Y VSLL+ +C+ L
Sbjct: 490 EKNLKFALSELSNSNIFDSLVCEERERVTDDIVYEVGETGALLTGLYAVSLLYNFCNTLS 549
Query: 605 HDEFFNPKPKFYYFDDLGGTIC-HIILPANAPIHQIVGTPQSSMEAAKKDACLKAIEDLH 663
D + P F L G C + LP + G+P S+ AK++A DL
Sbjct: 550 RDVYTRYYPTFTAQPCLSGWYCFEVELPKACKVPAAQGSPAKSIRKAKQNAAFIMCLDLI 609
Query: 664 KLGALNDYLLP 674
++G ++ +L P
Sbjct: 610 RMGLIDKHLKP 620
Score = 345 (126.5 bits), Expect = 1.6e-81, Sum P(3) = 1.6e-81
Identities = 122/411 (29%), Positives = 191/411 (46%)
Query: 984 SSLSLLPSIMHRLEN--LLVAIELKH----LLSASFPEGAEVSAEM--LLKALTTEKCQE 1035
+ L +LP H L+N LL+ L H L+++SF E + ++ +ALT+ + Q
Sbjct: 867 NDLYILPVSRH-LKNSALLIPSILYHIENLLVASSFIEHFRLDCKIDTACQALTSAESQL 925
Query: 1036 RFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVY 1095
F +RLE GD FLK +FL E +L R ++N NL K+A L Y
Sbjct: 926 NFDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKY 985
Query: 1096 IRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTI 1155
P + + CP K T D V K L K I
Sbjct: 986 ALSTPLE------IRHWCPYGFQKSTS------------DKCRYAV-LQK----LSVKRI 1022
Query: 1156 ADVVEALVGAFIDDSGFKAATAFLKWIGIQV-EFEASQVTNICISSKSFLPLSASLDM-- 1212
AD+VEA +GA + DSG +A K + + + + N ++ ++
Sbjct: 1023 ADMVEASIGACLLDSGLDSALKICKSLSVGLLDISNWDEWNNYFDLNTYADSLRNVQFPY 1082
Query: 1213 -ATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCY---QRLEFLGDAVLDYLITSYLYSVY 1268
+ +E +G+ F ++ LL AF+HPS G Y Q+LEFLGDAVLDY+I YLY Y
Sbjct: 1083 SSYIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKY 1142
Query: 1269 PKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTRE 1328
P G+LTD +S V N++ + + + +K++ +S + + I Y + + + RE
Sbjct: 1143 PNATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELI---EAFRE 1199
Query: 1329 V-KEGP------RCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPI 1372
E P PK + D +E+ + AI LDSGF+L ++ ++ FL+ +
Sbjct: 1200 TASENPWFWFEIDSPKFISDTLEAMICAIFLDSGFSLQSLQFVLPLFLNSL 1250
Score = 272 (100.8 bits), Expect = 1.6e-81, Sum P(3) = 1.6e-81
Identities = 88/255 (34%), Positives = 122/255 (47%)
Query: 57 QIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAH---LIRKPQ---KSICIF 110
Q+ RKYQ ++ A ++N ++ + TG GKT +AV LI + LI++ K I +F
Sbjct: 10 QLLRKYQQDVYNIASKQNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVF 69
Query: 111 LAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCL 170
L V LV QQA+ I + KV F G S I +Y V+V+ + L
Sbjct: 70 LVNKVPLVFQQAEYIRSQLPAKVGMFYGELSIEMSEQLLTNIILKYNVIVITADLFYLFL 129
Query: 171 YHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFY---KPDIMK----VPRIFGMTAS 223
F+ + + L+IFDECHHA N YA+IM DFY K + K +PRIFGMTAS
Sbjct: 130 ARGFLSINDLNLIIFDECHHAI--GNDAYARIMNDFYHRAKAVLSKKHFTLPRIFGMTAS 187
Query: 224 PVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGP--VINDT 281
P GK + NL + E L D+K + V + E L + P Y V+ +
Sbjct: 188 PFTGK----KGNLYHRLYQWEQLFDSKAHVVSENE-LADYFCLPEESYVMYSNKLVVPPS 242
Query: 282 SSSYVTCSEQLAEIK 296
S C E L K
Sbjct: 243 DSIIKKCEETLQGCK 257
Score = 154 (59.3 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 54/180 (30%), Positives = 83/180 (46%)
Query: 927 KHPKQPLLRAKPL-FRLR-NLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGS 984
K K P K L RL +L NR +S ++ ++ + L I+ S+ + +
Sbjct: 827 KKDKAPSALCKKLPLRLNYSLWGNRAKSIPKSQQVRSFY------INDLYILPVSRHLKN 880
Query: 985 SLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEM--LLKALTTEKCQERFSLERL 1042
S L+PSI++ +ENLLVA +SF E + ++ +ALT+ + Q F +RL
Sbjct: 881 SALLIPSILYHIENLLVA--------SSFIEHFRLDCKIDTACQALTSAESQLNFDYDRL 932
Query: 1043 EILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFD 1102
E GD FLK +FL E +L R ++N NL K+A L Y P +
Sbjct: 933 EFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYALSTPLE 992
>WB|WBGene00000939 [details] [associations]
symbol:dcr-1 species:6239 "Caenorhabditis elegans"
[GO:0004525 "ribonuclease III activity" evidence=IEA;IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016891
"endoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0040010 "positive regulation
of growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006952 "defense response" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010467 "gene expression"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0045132
"meiotic chromosome segregation" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IMP] [GO:0040034 "regulation of development,
heterochronic" evidence=IMP] [GO:0031050 "dsRNA fragmentation"
evidence=IDA] [GO:0035262 "gonad morphogenesis" evidence=IMP]
[GO:0004530 "deoxyribonuclease I activity" evidence=IDA]
[GO:0000737 "DNA catabolic process, endonucleolytic" evidence=IDA]
[GO:0006401 "RNA catabolic process" evidence=IDA] [GO:0006309
"apoptotic DNA fragmentation" evidence=IGI] [GO:0031054 "pre-miRNA
processing" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005829 GO:GO:0005524 GO:GO:0002009
GO:GO:0018991 GO:GO:0040010 GO:GO:0006952 GO:GO:0002119
GO:GO:0046872 GO:GO:0040011 GO:GO:0006401 GO:GO:0040035
GO:GO:0003725 GO:GO:0045132 SUPFAM:SSF101690 GO:GO:0031054
GO:GO:0030422 GO:GO:0040034 GO:GO:0006309 GO:GO:0016075
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:FO081380
GO:GO:0008026 GO:GO:0035262 eggNOG:COG1111 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PIR:S44849 RefSeq:NP_498761.2
DIP:DIP-25340N IntAct:P34529 MINT:MINT-1040079 STRING:P34529
PaxDb:P34529 EnsemblMetazoa:K12H4.8 GeneID:176138
KEGG:cel:CELE_K12H4.8 UCSC:K12H4.8 CTD:42693 WormBase:K12H4.8
GeneTree:ENSGT00510000046789 HOGENOM:HOG000022395 InParanoid:P34529
NextBio:891290 GO:GO:0004530 Uniprot:P34529
Length = 1910
Score = 470 (170.5 bits), Expect = 1.8e-79, Sum P(6) = 1.8e-79
Identities = 163/534 (30%), Positives = 259/534 (48%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKS---ICIFLAPTVA 116
R YQ+EL KA ++N IV LGTG GKT IAVLL+ E + P F+ V
Sbjct: 14 RDYQVELLDKATKKNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQGGKRAFFVVEKVN 73
Query: 117 LVQQQAKVIEESIGFKVRTFCGG-SKRL---KSHCDWEKEIDQYEVLVMIPQILLYCLYH 172
LV+QQA IE FKV G S L K CD + + ++ V+V+ Q LL + H
Sbjct: 74 LVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCD--QFMKRHHVVVITAQCLLDLIRH 131
Query: 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDF--YKPDIMKVPRIFGMTASPVVGKGA 230
++K+E + +LIFDECHHA + S HPY IM D+ K D VPR+ G+TAS + K
Sbjct: 132 AYLKIEDMCVLIFDECHHA-LGSQHPYRSIMVDYKLLKKD-KPVPRVLGLTASLI--KAK 187
Query: 231 SAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCS- 289
A L + + LE+ +D+ + + D L + + P Y+ + D +
Sbjct: 188 VAPEKLMEQLKKLESAMDSVIETASDLVSLSKYGAKP----YEVVIICKDFEIGCLGIPN 243
Query: 290 -EQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFC---LENLGVCGALHASY 345
+ + EI E ++ ++ H L ++ + DS+K LG A +
Sbjct: 244 FDTVIEIFDET-VAFVNTTTEFHPDLDLDPRR--PIKDSLKTTRAVFRQLGPWAAWRTAQ 300
Query: 346 ILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRR-DGIASDLSCIEVLKEPF 404
+ E ++I+++ + D RF + A I R + + IE L+ P+
Sbjct: 301 VW----EKELGKIIKSQ--VLPDKTLRFLNMAKTSMITIKRLLEPEMKKIKSIEALR-PY 353
Query: 405 FSKKLLRLIGILSTF-------RLQ----QHMKCIVFVNRIVTARALSYILQNLKFLASW 453
++++RL IL TF R++ +H+ I+FV++ A +L +++++K SW
Sbjct: 354 VPQRVIRLFEILETFNPEFQKERMKLEKAEHLSAIIFVDQRYIAYSLLLMMRHIK---SW 410
Query: 454 RCHF-------LVGVNA-GLKSMSRNAMKS----ILEKFRSGELNLLVATKVGEEGLDIQ 501
F +VG + L S + +L +F E+N L+AT V EEG+D++
Sbjct: 411 EPKFKFVNPDYVVGASGRNLASSDSQGLHKRQTEVLRRFHRNEINCLIATSVLEEGVDVK 470
Query: 502 TCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDL-IKNFSKEE 554
C LVI+FD P + S++QS+GRAR S Y V+ + D +K+F + E
Sbjct: 471 QCNLVIKFDRPLDMRSYVQSKGRARRAGSRYVITVEEKDTAACDSDLKDFQQIE 524
Score = 306 (112.8 bits), Expect = 1.8e-62, Sum P(5) = 1.8e-62
Identities = 90/281 (32%), Positives = 145/281 (51%)
Query: 423 QHMKCIVFVNRIVTARALSYILQNLKFLASWRCHF-------LVGVNA-GLKSMSRNAMK 474
+H+ I+FV++ A +L +++++K SW F +VG + L S +
Sbjct: 383 EHLSAIIFVDQRYIAYSLLLMMRHIK---SWEPKFKFVNPDYVVGASGRNLASSDSQGLH 439
Query: 475 S----ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQS 530
+L +F E+N L+AT V EEG+D++ C LVI+FD P + S++QS+GRAR S
Sbjct: 440 KRQTEVLRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDRPLDMRSYVQSKGRARRAGS 499
Query: 531 EYAFLVDSGNQRELDL-IKNFSKEEDRM---NREIMD--RTSSDAF----TCSEERIYKV 580
Y V+ + D +K+F + E + +R + + SD F S+ Y V
Sbjct: 500 RYVITVEEKDTAACDSDLKDFQQIEKILLSRHRTVNNPIEDDSDRFEEFDVDSQMEPYVV 559
Query: 581 DSSGACISAGYGVSLLHRYCSKLPHDEFFN--PKPKFYYFDDLGGT-IC-HIILPANAPI 636
+ +GA + ++L++RYCSKLP D F P + ++ G T C ++LP N+PI
Sbjct: 560 EKTGATLKMSTAIALINRYCSKLPSDIFTRLVPHNQIIPIEENGVTKYCAELLLPINSPI 619
Query: 637 -HQIV-GTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQ 675
H IV P + + A+ L+A LH G L+D LLP+
Sbjct: 620 KHAIVLKNPMPNKKTAQMAVALEACRQLHLEGELDDNLLPK 660
Score = 281 (104.0 bits), Expect = 1.8e-79, Sum P(6) = 1.8e-79
Identities = 74/180 (41%), Positives = 99/180 (55%)
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV--EFEASQVTNICI----------SS 1200
K+IAD VEAL+G + G + W+G++V + + S V + + +S
Sbjct: 1571 KSIADAVEALIGVHLLTLGPNPTLKVMNWMGLKVIQKDQKSDVPSPLLRFIDTPTNPNAS 1630
Query: 1201 KSFLP-LSASLDMATLEILLGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLD 1257
+FL L LE +G++F R L+QAF H S+ NR+ GCYQRLEFLGDAVLD
Sbjct: 1631 LNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLD 1690
Query: 1258 YLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV 1317
Y+IT YL+ + PG LTDLRS LVNN FA++AV F K I L I +V
Sbjct: 1691 YMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFV 1750
Score = 140 (54.3 bits), Expect = 1.8e-79, Sum P(6) = 1.8e-79
Identities = 43/131 (32%), Positives = 64/131 (48%)
Query: 1016 GAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVD--EGELTRR 1073
G VS +LL ALTT + SLER E +GD+FLK+A +L+ H +D EG+L+
Sbjct: 1389 GLGVSPCLLLTALTTSNAADGMSLERFETIGDSFLKFATTDYLY--HTLLDQHEGKLSFA 1446
Query: 1074 RSNAVNNSNLLKLAARNNLQVYIRDQPFD-------PCQFFALGRRCPRIC-SKETERTI 1125
RS V+N NL +L + + I FD PC + P ++E + I
Sbjct: 1447 RSKEVSNCNLYRLGKKLGIPQLIVANKFDAHDSWLPPCYIPTCDFKAPNTDDAEEKDNEI 1506
Query: 1126 HSQYDGRAPDD 1136
DG+ ++
Sbjct: 1507 ERILDGQVIEE 1517
Score = 129 (50.5 bits), Expect = 1.8e-79, Sum P(6) = 1.8e-79
Identities = 35/95 (36%), Positives = 52/95 (54%)
Query: 1300 KFLIFDSNVLSETINNYVDYMITPSSTREVKEGPR----CPKVLGDLVESSLGAILLDSG 1355
KF+ S +T N YM+T + E+ EG PK +GD+ ES GAI LDSG
Sbjct: 1748 KFVKLCSERNFDTNFNAEMYMVT--TEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSG 1805
Query: 1356 FNLNTVWKIMLSFLDPILKF--SNLQLNPIRELLE 1388
NL+T W+++ + ++ +N +PIREL+E
Sbjct: 1806 RNLDTTWQVIFHMMRGTIELCCANPPRSPIRELME 1840
Score = 103 (41.3 bits), Expect = 7.0e-43, Sum P(4) = 7.0e-43
Identities = 62/249 (24%), Positives = 103/249 (41%)
Query: 965 DLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEML 1024
D+P L L+ I + +SL+ L ++ + + +L+ + F E A L
Sbjct: 1612 DVPSPL--LRFIDTPTNPNASLNFLNNLWQQFQ----FTQLEEKIGYRFKERA-----YL 1660
Query: 1025 LKALT-TEKCQERFS--LERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNS 1081
++A T R + +RLE LGDA L Y + R+LF G LT RS VNN+
Sbjct: 1661 VQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNT 1720
Query: 1082 NLLKLAARNNLQVYIRDQPFDPCQ-FFALGRRCPRICSKETERTIHSQYDGRAPDDLNAE 1140
LA + Q + C + + + ++CS ER + ++ + E
Sbjct: 1721 IFASLAVKFEFQKHF----IAMCPGLYHMIEKFVKLCS---ERNFDTNFNAEMYM-VTTE 1772
Query: 1141 VRCSKGHHWLHK--KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVT-NIC 1197
+G + K + D+ E++ GA DSG T W QV F + T +C
Sbjct: 1773 EEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTT---W---QVIFHMMRGTIELC 1826
Query: 1198 ISSKSFLPL 1206
++ P+
Sbjct: 1827 CANPPRSPI 1835
Score = 66 (28.3 bits), Expect = 7.6e-49, Sum P(6) = 7.6e-49
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 1242 GGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNN 1286
G +R E +GD+ L + T YLY G+L+ RS V+N
Sbjct: 1409 GMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSN 1453
Score = 58 (25.5 bits), Expect = 6.5e-71, Sum P(6) = 6.5e-71
Identities = 29/110 (26%), Positives = 54/110 (49%)
Query: 966 LPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKH--LLSASFPEGAEV--SA 1021
L PEL + I S + + ++ LPSI +R+ LL+ EL+ L+ A E ++ +
Sbjct: 994 LVPELMDIHPI--SATLWNVIAALPSIFYRVNQLLLTDELRETILVKAFGKEKTKLDDNV 1051
Query: 1022 EMLLKALTTE-KCQERFSLERLEILGDAFLKYAVGRHLFLL-HDTVDEGE 1069
E A TE + ++ +++++ L D K + +D +D+GE
Sbjct: 1052 EWNSLAYATEYEEKQTIIVKKIQQLRDLNQKSIEDQERETRENDKIDDGE 1101
Score = 48 (22.0 bits), Expect = 1.8e-79, Sum P(6) = 1.8e-79
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 890 FYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNR 949
FY V I+ E S + D+ + ++ I Y + + Q LL NLL R
Sbjct: 892 FYYVAEILPEWRPSSKFPDTHFETFNEYFIKKYKLEIYDQNQSLLDVDFTSTRLNLLQPR 951
Score = 40 (19.1 bits), Expect = 4.6e-35, Sum P(5) = 4.6e-35
Identities = 17/78 (21%), Positives = 34/78 (43%)
Query: 477 LEKFRSGELNLLVATKVGEEGLDIQTCC-LVIRFDLPET--VASFI-QSRGRARMPQSEY 532
LE+FR EL L + E+ + + C + ++P+ F+ Q + R+ +
Sbjct: 722 LERFREAELTLNPKRRKFEDPFNYEYCFGFLSAKEIPKIPPFPVFLRQGNMKVRLIVAPK 781
Query: 533 AFLVDSGNQRELDLIKNF 550
V + +E+ L N+
Sbjct: 782 KTTVTAAQLQEIQLFHNY 799
Score = 38 (18.4 bits), Expect = 1.8e-79, Sum P(6) = 1.8e-79
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 532 YAFLVDSGNQRELDLIKNFSKEEDRMNRE 560
YAF ++ + EL L K ED N E
Sbjct: 718 YAFELERFREAELTLNPKRRKFEDPFNYE 746
Score = 38 (18.4 bits), Expect = 2.6e-79, Sum P(5) = 2.6e-79
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 542 RELDLIKNFSKEEDRMNREI 561
RE L+K F KE+ +++ +
Sbjct: 1032 RETILVKAFGKEKTKLDDNV 1051
Score = 38 (18.4 bits), Expect = 7.0e-38, Sum P(2) = 7.0e-38
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 1456 TKSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKI 1496
T + +S LK + E L+ T N + D + FE+ +
Sbjct: 510 TAACDSDLKDFQQIEKILLSRHRTVNNPIEDDSDRFEEFDV 550
Score = 38 (18.4 bits), Expect = 2.6e-36, Sum P(3) = 2.6e-36
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 618 FDDLGGTI--CHIILPANAPIHQIVGTPQSSMEAAKKDACLKA 658
F + GTI C P +PI +++ QS + +K + L++
Sbjct: 1816 FHMMRGTIELC-CANPPRSPIRELMEFEQSKVRFSKMERILES 1857
>FB|FBgn0039016 [details] [associations]
symbol:Dcr-1 "Dicer-1" species:7227 "Drosophila melanogaster"
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0016443 "bidentate ribonuclease III activity" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016246 "RNA interference" evidence=IDA;IMP;TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP;TAS] [GO:0035087 "siRNA loading
onto RISC involved in RNA interference" evidence=IMP] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0031054
"pre-miRNA processing" evidence=IDA;IMP;TAS] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0042078 "germ-line stem cell
division" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0045448 "mitotic cell
cycle, embryonic" evidence=IMP] [GO:0007279 "pole cell formation"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0007367 "segment polarity determination" evidence=IGI]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0070883
"pre-miRNA binding" evidence=IDA] [GO:0003727 "single-stranded RNA
binding" evidence=IDA] [GO:0030727 "germarium-derived female
germ-line cyst formation" evidence=IMP] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0007294
GO:GO:0045448 GO:GO:0046872 GO:GO:0003727 GO:GO:0048813
GO:GO:0003725 GO:GO:0004386 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0033227 GO:GO:0007279 GO:GO:0030422
GO:GO:0007367 GO:GO:0035087 GO:GO:0030727 GO:GO:0042078 KO:K11592
Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:42693
GeneTree:ENSGT00510000046789 EMBL:AY050230 RefSeq:NP_524453.1
UniGene:Dm.1283 ProteinModelPortal:Q9VCU9 SMR:Q9VCU9 DIP:DIP-23028N
IntAct:Q9VCU9 MINT:MINT-923321 STRING:Q9VCU9 PaxDb:Q9VCU9
PRIDE:Q9VCU9 EnsemblMetazoa:FBtr0084324 GeneID:42693
KEGG:dme:Dmel_CG4792 UCSC:CG4792-RA FlyBase:FBgn0039016
eggNOG:COG0571 InParanoid:Q9VCU9 OMA:FLTPRYV OrthoDB:EOG44B8H0
PhylomeDB:Q9VCU9 GenomeRNAi:42693 NextBio:830091 Bgee:Q9VCU9
GermOnline:CG4792 GO:GO:0016443 GO:GO:0070883 Uniprot:Q9VCU9
Length = 2249
Score = 359 (131.4 bits), Expect = 2.7e-74, Sum P(7) = 2.7e-74
Identities = 103/257 (40%), Positives = 134/257 (52%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
LG++F R LLQA H S+ NRL CYQRLEFLGDAVLDYLIT +LY + PG L
Sbjct: 2000 LGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGAL 2059
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV------------DYMITPS 1324
TDLRS LVNN FA++AV F+KF S L++ I+ +V +Y +
Sbjct: 2060 TDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISEEYYLLSE 2119
Query: 1325 STREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDP-ILKFSN-LQLNP 1382
+ E PK LGD+ ES GAI LDS +L+ VW + + + P I +FSN + +P
Sbjct: 2120 EECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKSP 2179
Query: 1383 IRELLELCNSYDLDLQFPSLKKGGK--FLAEAKVTGKDKDVFISACATNLSRKEAIR--I 1438
IRELLEL P K GK LA+ + DVF + R I
Sbjct: 2180 IRELLEL---------EPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCT 2230
Query: 1439 ASQQLFSKLKAAGYVPK 1455
A++ +LK G + K
Sbjct: 2231 AAKCALRQLKKQGLIAK 2247
Score = 168 (64.2 bits), Expect = 2.7e-74, Sum P(7) = 2.7e-74
Identities = 34/84 (40%), Positives = 52/84 (61%)
Query: 1020 SAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVN 1079
S ++L+ALT + +LERLE +GD+FLKYA+ +L++ ++ V EG+L+ RS V
Sbjct: 1722 SPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVA 1781
Query: 1080 NSNLLKLAARNNLQVYIRDQPFDP 1103
N NL +L R L Y+ F+P
Sbjct: 1782 NLNLYRLGRRKRLGEYMIATKFEP 1805
Score = 147 (56.8 bits), Expect = 2.7e-74, Sum P(7) = 2.7e-74
Identities = 40/122 (32%), Positives = 65/122 (53%)
Query: 428 IVFVNRIVTARALSYILQ-------NLKFLASWRCHFLVGVNAGLKSMSRNA------MK 474
+++ N+ TAR L +L +LKFL RC + A + + A +
Sbjct: 496 LIYCNQNHTARVLFELLAEISRRDPDLKFL---RCQYTTDRVADPTTEPKEAELEHRRQE 552
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAF 534
+L++FR + N+L+ T V EEG+D+ C LV+R+D P T S++Q +GRAR + +
Sbjct: 553 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAYHVI 612
Query: 535 LV 536
LV
Sbjct: 613 LV 614
Score = 137 (53.3 bits), Expect = 2.7e-74, Sum P(7) = 2.7e-74
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 583 SGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYF--DDLGGTICH--IILPANAPI-H 637
+GA + G ++L+++YC++LP D F + + G T+ + LP N+P+ H
Sbjct: 816 TGASVDLGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKH 875
Query: 638 QIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLP 674
IVG P + A++ A L+A +LH++G L+D L P
Sbjct: 876 DIVGLPMPTQTLARRLAALQACVELHRIGELDDQLQP 912
Score = 136 (52.9 bits), Expect = 2.7e-74, Sum P(7) = 2.7e-74
Identities = 56/232 (24%), Positives = 99/232 (42%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R +Q+EL A E N I+ LG K IA+ L+ EL+ R+ + + ++L+ V
Sbjct: 18 RDFQVELLATAYERNTIICLGHRSSKEFIALKLLQELSRRARRHGR-VSVYLSCEVGTST 76
Query: 120 QQAKV---IEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIK 176
+ + + +V + HC W Y V ++ P+ LY L R +
Sbjct: 77 EPCSIYTMLTHLTDLRVWQEQPDMQIPFDHC-WT----DYHVSILRPEGFLYLLETRELL 131
Query: 177 MELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVP-----RIFGMTASPVVGKGAS 231
+ + L++ ++CH + V Y +I + ++ IM P RI G+ A P+ G
Sbjct: 132 LSSVELIVLEDCHDSAV-----YQRI-RPLFENHIMPAPPADRPRILGL-AGPLHSAGCE 184
Query: 232 AQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSS 283
Q L + +LE + ++ + D + + S P + Q P D S
Sbjct: 185 LQ-QLSAMLATLEQSVLCQIETASDIVTVLRYCSRPHEYIVQCAPFEMDELS 235
Score = 122 (48.0 bits), Expect = 2.2e-29, Sum P(4) = 2.2e-29
Identities = 52/186 (27%), Positives = 75/186 (40%)
Query: 986 LSLLPSIMHRLENLLVAIE-LKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEI 1044
L P+ L+ LL E + L F + + + M + T + + + +RLE
Sbjct: 1976 LHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCY--QRLEF 2033
Query: 1045 LGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPC 1104
LGDA L Y + RHL+ G LT RS VNN+ LA R+ + R P
Sbjct: 2034 LGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH--LSPG 2091
Query: 1105 QFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVG 1164
+ R RI +E I +Y L +E C K + DV E++ G
Sbjct: 2092 LNDVIDRFV-RI-QQENGHCISEEYY------LLSEEECDDAEDVEVPKALGDVFESIAG 2143
Query: 1165 AFIDDS 1170
A DS
Sbjct: 2144 AIFLDS 2149
Score = 120 (47.3 bits), Expect = 1.7e-31, Sum P(5) = 1.7e-31
Identities = 37/108 (34%), Positives = 53/108 (49%)
Query: 1180 KWIGIQVE-FEASQVTNICISSKSFLPLSASLDMATLEILLGHQFLHRGLLLQAFVHPSF 1238
K + +Q E E T+ + + LP S D L+GH ++LQA +
Sbjct: 1678 KQLKLQYERIEIEPPTSTKAITSAILPAGFSFDRQP--DLVGHPGPSPSIILQALTMSNA 1735
Query: 1239 NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNN 1286
N G +RLE +GD+ L Y IT+YLY Y + G+L+ LRS V N
Sbjct: 1736 ND-GINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVAN 1782
Score = 96 (38.9 bits), Expect = 2.7e-74, Sum P(7) = 2.7e-74
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 1148 HWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
H + K+IAD VEAL+GA++ + G + A F+ W+G++V
Sbjct: 1896 HSIPDKSIADCVEALIGAYLIECGPRGALLFMAWLGVRV 1934
Score = 72 (30.4 bits), Expect = 2.7e-74, Sum P(7) = 2.7e-74
Identities = 35/144 (24%), Positives = 63/144 (43%)
Query: 888 KWFYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLH 947
++FY V I + S + + + + + YG+ +++ QPLL N L
Sbjct: 1147 QYFY-VAEICPHLSPLSCFPGDNYRTFKHYYLVKYGLTIQNTSQPLLDVDHTSARLNFLT 1205
Query: 948 ----NRK-------LEDSESHELE--EYFDDLPPELCQLKIIGFSKDIGSSLSLLPSIMH 994
NRK E+++ + E E L PELC + F + + LP I++
Sbjct: 1206 PRYVNRKGVALPTSSEETKRAKRENLEQKQILVPELCTVH--PFPASLWRTAVCLPCILY 1263
Query: 995 RLENLLVAIELKHLLSASFPEGAE 1018
R+ LL+A +++ +SA G +
Sbjct: 1264 RINGLLLADDIRKQVSADLGLGRQ 1287
Score = 47 (21.6 bits), Expect = 1.4e-45, Sum P(5) = 1.4e-45
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 61 KYQLELCKKAM---EENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTV 115
K LEL K+ + E I+ G T VL + + L C+F+ PTV
Sbjct: 1032 KVSLELAKERVILTSEQIVCINGF-LNYTFTNVLRLQKFLMLFDPDSTENCVFIVPTV 1088
Score = 46 (21.3 bits), Expect = 2.8e-62, Sum P(6) = 2.8e-62
Identities = 22/95 (23%), Positives = 42/95 (44%)
Query: 905 PYKDSDSSSHVD--HLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELEEY 962
P SD+++ +D H ++S L H + + L + N + + E E E +
Sbjct: 744 PEDTSDTTAEIDTAHSLASTTKDLVHQMAQYREIEQM--LLSKCANTEPPEQEQSEAERF 801
Query: 963 FDDLPPELCQLKII-GFSKDIGSSLSLLPSIMHRL 996
L + ++ G S D+GS+++L+ RL
Sbjct: 802 SACLAAYRPKPHLLTGASVDLGSAIALVNKYCARL 836
Score = 46 (21.3 bits), Expect = 2.6e-36, Sum P(6) = 2.6e-36
Identities = 27/123 (21%), Positives = 56/123 (45%)
Query: 1236 PSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSM-LVNNQAFANVAV 1294
P N L CY + L A+++ I ++ + + L L+ ++ +V +A A + +
Sbjct: 1805 PHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADA-LGL 1863
Query: 1295 DQS--FYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILL 1352
+Q+ + DSN + ++ Y + S + + K + D VE+ +GA L+
Sbjct: 1864 EQNGGAQNGQLDDSNDSCNDFSCFIPYNLV--SQHSIPD-----KSIADCVEALIGAYLI 1916
Query: 1353 DSG 1355
+ G
Sbjct: 1917 ECG 1919
Score = 38 (18.4 bits), Expect = 1.9e-61, Sum P(6) = 1.9e-61
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 961 EYFDDLPPELCQLKIIGFSKDIGSSLSL 988
E F PP C +K+ ++ ++ L
Sbjct: 678 EVFSKQPPTACDIKLQEIQDELPAAAQL 705
Score = 38 (18.4 bits), Expect = 1.2e-44, Sum P(5) = 1.2e-44
Identities = 34/138 (24%), Positives = 56/138 (40%)
Query: 233 QANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQL 292
Q L I +N K+Y EDA+ + F R+ + T S V S +L
Sbjct: 980 QLTLQCPIPEEQNTRGRKIYPPEDAQ--QGFGILTTKRIPKLSAFSIFTRSGEVKVSLEL 1037
Query: 293 AEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDS-MKFCLENLGVCGALHASYILLSGD 351
A +E+ I + + + L T + RL M F ++ C + + +G
Sbjct: 1038 A---KERVILTSEQIVCINGFLNYTFTNVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGG 1094
Query: 352 ETMR---NELIEAEGNTI 366
+ + ELI+A GNT+
Sbjct: 1095 KHIDWQFLELIQANGNTM 1112
>FB|FBgn0034246 [details] [associations]
symbol:Dcr-2 "Dicer-2" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS;NAS] [GO:0003725
"double-stranded RNA binding" evidence=IEA;ISS;NAS] [GO:0016246
"RNA interference" evidence=IMP;NAS;IDA;TAS] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IMP;IDA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0035087 "siRNA
loading onto RISC involved in RNA interference" evidence=IMP]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006342 "chromatin
silencing" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0006379 "mRNA cleavage" evidence=IMP] [GO:0009597 "detection of
virus" evidence=IMP] [GO:0016442 "RNA-induced silencing complex"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0007626 "locomotory
behavior" evidence=IMP] [GO:0035197 "siRNA binding" evidence=IDA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE013599 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0007626 GO:GO:0016887 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 GO:GO:0035197 GO:GO:0016442 GO:GO:0033227
GO:GO:0070868 GO:GO:0030422 GO:GO:0035087 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0006379 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 GO:GO:0009597
EMBL:BT128787 RefSeq:NP_523778.2 UniGene:Dm.7764 SMR:A1ZAW0
DIP:DIP-54444N IntAct:A1ZAW0 STRING:A1ZAW0
EnsemblMetazoa:FBtr0086904 GeneID:36993 KEGG:dme:Dmel_CG6493
UCSC:CG6493-RA CTD:36993 FlyBase:FBgn0034246 InParanoid:A1ZAW0
OrthoDB:EOG4DJHB9 GenomeRNAi:36993 NextBio:801402 Uniprot:A1ZAW0
Length = 1722
Score = 284 (105.0 bits), Expect = 2.1e-71, Sum P(6) = 2.1e-71
Identities = 68/199 (34%), Positives = 113/199 (56%)
Query: 1136 DLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGI---QVEFEASQ 1192
D ++EV G + K IAD +EAL+G + + G + A L++ I ++ +Q
Sbjct: 1347 DFSSEVNFCVGLVTIPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICRADIDKPLTQ 1406
Query: 1193 VTNICISSKSFLPLSASLDMATLE-ILLGHQFLHRGL---------LLQAFVHPSF--NR 1240
+ N+ + K + A+++ ++ L+ H +L + L LLQA HPS+ NR
Sbjct: 1407 LLNLELGGKK---MRANVNTTEIDGFLINHYYLEKNLGYTFKDRRYLLQALTHPSYPTNR 1463
Query: 1241 LGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYK 1300
+ G YQ LEF+GDA+LD+LI++Y++ K+ PG LTDLRS LVNN A + V +
Sbjct: 1464 ITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLHF 1523
Query: 1301 FLIFDSNVLSETINNYVDY 1319
F++ ++ LSE I+ +V++
Sbjct: 1524 FILAENAKLSEIISKFVNF 1542
Score = 248 (92.4 bits), Expect = 2.1e-71, Sum P(6) = 2.1e-71
Identities = 82/280 (29%), Positives = 132/280 (47%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKS---ICIFLAPTVA 116
R YQL L + N IVYL TG GKT +A+L++ + KP +S +F+ TV
Sbjct: 9 RGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMCNTVE 68
Query: 117 LVQQQAKVIEESIGFKVRTFCGGSKRLKSHCD--WEKEIDQYEVLVMIPQILLYCLYHRF 174
L +QQA + FKV F G + + W EI + +VLV Q+ L + +
Sbjct: 69 LARQQAMAVRRCTNFKVG-FYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQTY 127
Query: 175 IKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQA 234
+ + ++++I DECHH +HP+ + M+ F + K+PR+ G+T V+ KG
Sbjct: 128 VALSSLSVVIIDECHHGT--GHHPFREFMRLFTIANQTKLPRVVGLTG--VLIKGNEI-T 182
Query: 235 NLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAE 294
N+ + LE + +V D +++E+ V +Y P + S+ EQ+
Sbjct: 183 NVATKLKELEITYRGNIITVSDTKEMEN------VMLYATKPT--EVMVSFPH-QEQVLT 233
Query: 295 IKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLEN 334
+ R ISA K + L N Q R S++ CL +
Sbjct: 234 VTR--LISAEIEKFYVSLDLMNIGVQPIRRSKSLQ-CLRD 270
Score = 205 (77.2 bits), Expect = 2.1e-71, Sum P(6) = 2.1e-71
Identities = 55/212 (25%), Positives = 101/212 (47%)
Query: 427 CIVFVNRIVTARA-----LSYILQNLKFLASWRCHFLVG---VNAGLKS-MSRNAMKSIL 477
C+VFV R T + L+YI + F+VG ++ +S + R KS +
Sbjct: 388 CLVFVERRYTCKCIYGLLLNYIQSTPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAI 447
Query: 478 EKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYA-FLV 536
++FR G NL++ + V EEG+D+Q C V D +T ++QS+GRAR ++++ F
Sbjct: 448 QQFRDGNANLMICSSVLEEGIDVQACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTA 507
Query: 537 DSGNQRELDLIKNFSKEE----DRMNREIMDRTSSDAFTCSEERIYKVD----SSGACIS 588
D ++ + I + K + + ++++T + + +D +GA +
Sbjct: 508 DKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYEIKGHFQDDIDPFTNENGAVLL 567
Query: 589 AGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDD 620
+++LHRYC +P D F P F+ +
Sbjct: 568 PNNALAILHRYCQTIPTDAFGFVIPWFHVLQE 599
Score = 119 (46.9 bits), Expect = 2.1e-71, Sum P(6) = 2.1e-71
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 990 PSIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAF 1049
P++ +++ LL+ L+ +S AE E L A+T + F +ERLEILGD+F
Sbjct: 1165 PTVRGKVKPLLI---LQKTVSKEHITPAE-QGEFLA-AITASSAADVFDMERLEILGDSF 1219
Query: 1050 LKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLL 1084
LK + +L + +EG LT +S V+N NLL
Sbjct: 1220 LKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1254
Score = 109 (43.4 bits), Expect = 1.6e-61, Sum P(6) = 1.6e-61
Identities = 31/107 (28%), Positives = 51/107 (47%)
Query: 581 DSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYF-----DDLGGTIC---HII--- 629
+ +GA + +++LHRYC +P D F P F+ D + G H+I
Sbjct: 560 NENGAVLLPNNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISIN 619
Query: 630 LPANAPIHQ-IVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQ 675
+P N + I P +++ AK A KA + L+ LG LN+ +P+
Sbjct: 620 MPVNCMLRDTIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPK 666
Score = 96 (38.9 bits), Expect = 2.1e-71, Sum P(6) = 2.1e-71
Identities = 35/145 (24%), Positives = 72/145 (49%)
Query: 1310 SETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFL 1369
++ I+ + + P + PK LGD++E+ + A+ LD +L W+++ +
Sbjct: 1583 NKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVLEALIAAVYLDCR-DLQRTWEVIFNLF 1641
Query: 1370 DPILK-FSN-LQLNPIRELLELCNSYDLDLQFPS-LKKGGKFLAEAKVTGKDKDVFISAC 1426
+P L+ F+ + +N IR+L+E ++ + F S + +G + + T +K + +
Sbjct: 1642 EPELQEFTRKVPINHIRQLVEHKHAKPV---FSSPIVEGETVMVSCQFTCMEKTIKVYGF 1698
Query: 1427 ATNLSRKE--AIRIASQQLFSKLKA 1449
+N + + A + A QQL SK A
Sbjct: 1699 GSNKDQAKLSAAKHALQQL-SKCDA 1722
Score = 95 (38.5 bits), Expect = 2.3e-44, Sum P(5) = 2.3e-44
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 1024 LLKALTTEKCQ-ERF--SLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNN 1080
LL+ALT R S + LE +GDA L + + ++F + ++ G LT RS VNN
Sbjct: 1450 LLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNN 1509
Query: 1081 SNLLKLAARNNLQVYI 1096
+ L + R+ L +I
Sbjct: 1510 TTLACICVRHRLHFFI 1525
Score = 89 (36.4 bits), Expect = 9.4e-44, Sum P(5) = 9.4e-44
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 1246 QRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFL 1302
+RLE LGD+ L T YL S Y G LT+++S LV+N+ +D K L
Sbjct: 1210 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTL 1266
Score = 84 (34.6 bits), Expect = 2.1e-71, Sum P(6) = 2.1e-71
Identities = 52/203 (25%), Positives = 87/203 (42%)
Query: 816 SSSTFYLLLPVIF---HKNSVDWKIIRRCLSSPVFGTPGGSVD-RKSLPSHGPLQLHNGW 871
S YL++P+I + DW+++ P + G +V R+ P+ P
Sbjct: 824 SKENSYLVVPLILGAGEQKCFDWELMTNFRRLPQ--SHGSNVQQREQQPAPRP------- 874
Query: 872 SSESDVENSLV---YATHKKWFYLVTNIVFEKNGYSPY-KDSDSSSHVDHLISSYGIHLK 927
D E +V YA + K LVT + E S K+ ++ + +S YG +
Sbjct: 875 ---EDFEGKIVTQWYANYDKPM-LVTKVHRELTPLSYMEKNQQDKTYYEFTMSKYGNRIG 930
Query: 928 ---HPKQPLLRAKPLF-RLRNLLHNRKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIG 983
H + ++ + L +L +HNR +++S + L PELC F D+
Sbjct: 931 DVVHKDKFMIEVRDLTEQLTFYVHNRGKFNAKSKAKMKVI--LIPELCFN--FNFPGDLW 986
Query: 984 SSLSLLPSIMHRLENLLVAIELK 1006
L LPSI++R+ LL A L+
Sbjct: 987 LKLIFLPSILNRMYFLLHAEALR 1009
Score = 56 (24.8 bits), Expect = 1.0e-42, Sum P(5) = 1.0e-42
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 1337 KVLGDLVESSLGAILLDSG----FNLNTVWKIMLSFLD-PILKFSNLQLNPIRELLELCN 1391
KV+ D +E+ LG I+ + G F + +KI + +D P+ + NL+L +++ N
Sbjct: 1364 KVIADTLEALLGVIVKNYGLQHAFKMLEYFKICRADIDKPLTQLLNLELGG-KKMRANVN 1422
Query: 1392 SYDLD 1396
+ ++D
Sbjct: 1423 TTEID 1427
Score = 46 (21.3 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 19/73 (26%), Positives = 32/73 (43%)
Query: 1391 NSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAA 1450
N+ ++ + F S K +FL KV+ DKD C + R R + ++ L
Sbjct: 354 NTEEVIMNF-STPKVQRFLMSLKVSFADKDPKDICCLVFVER----RYTCKCIYGLL--L 406
Query: 1451 GYVPKTKSLESIL 1463
Y+ T L ++L
Sbjct: 407 NYIQSTPELRNVL 419
Score = 44 (20.5 bits), Expect = 1.9e-50, Sum P(6) = 1.9e-50
Identities = 14/76 (18%), Positives = 33/76 (43%)
Query: 353 TMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRL 412
T R +I +++ +A++ +EV + ++ + + I E F+ L
Sbjct: 194 TYRGNIITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISAEIEKFYVSLDLMN 253
Query: 413 IGILSTFRLQQHMKCI 428
IG+ R + ++C+
Sbjct: 254 IGV-QPIRRSKSLQCL 268
Score = 42 (19.8 bits), Expect = 4.5e-67, Sum P(6) = 4.5e-67
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 921 SYGIHLKHPKQPLLRAKPLFRLRNLLHNR 949
+Y I L++ K P L PLF + LH R
Sbjct: 753 NYAILLRN-KLPRLAEMPLFSNQGKLHVR 780
Score = 40 (19.1 bits), Expect = 4.3e-41, Sum P(5) = 4.3e-41
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 1153 KTIADVVEALVGA-FID 1168
K + DV+EAL+ A ++D
Sbjct: 1610 KALGDVLEALIAAVYLD 1626
Score = 39 (18.8 bits), Expect = 9.3e-67, Sum P(6) = 9.3e-67
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 719 SQYPVRLNFYF 729
S YPV L++Y+
Sbjct: 1101 STYPVELDYYY 1111
Score = 39 (18.8 bits), Expect = 3.3e-43, Sum P(4) = 3.3e-43
Identities = 27/116 (23%), Positives = 53/116 (45%)
Query: 931 QPLLRAKPLFRLRNLLHN---RKLEDSESHELEEYFDDLPPELCQLKIIGFSKDIGSSLS 987
QP+ R+K L LR+ ++L + ++++EY I+ F + +
Sbjct: 257 QPIRRSKSLQCLRDPSKKSFVKQLFNDFLYQMKEYGIYAASIAIISLIVEFDIKRRQAET 316
Query: 988 LLPSIMHRLENLLVAIELKHLL-----SASFPEGAE-VSAEMLLKALTTEKCQERF 1037
L +MHR L + +++HLL ++ + + V+ E ++ +T K Q RF
Sbjct: 317 LSVKLMHRTA-LTLCEKIRHLLVQKLQDMTYDDDDDNVNTEEVIMNFSTPKVQ-RF 370
>ASPGD|ASPL0000041548 [details] [associations]
symbol:dclB species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001650
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
GO:GO:0005524 GO:GO:0046872 EMBL:BN001306 GO:GO:0051607
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AACD01000052
ProteinModelPortal:P0C5H7 HOGENOM:HOG000048683 OrthoDB:EOG4JWZNK
Uniprot:P0C5H7
Length = 1429
Score = 292 (107.8 bits), Expect = 6.1e-64, Sum P(5) = 6.1e-64
Identities = 80/240 (33%), Positives = 122/240 (50%)
Query: 52 DKDPKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFL 111
++ + AR YQLE+ + +++ NIIV +GTG GKT IA+L I H + + FL
Sbjct: 7 ERSAEHRARSYQLEMFEASLKGNIIVVMGTGSGKTQIALLRII---HELENSDGKLIWFL 63
Query: 112 APTVALVQQQAKVIEESI-GFKVRTFCGGSK-RL-KSHCDWEKEIDQYEVLVMIPQILLY 168
APTV L QQ +VI + I K RT G K L W+ ++ +V+V P +L
Sbjct: 64 APTVPLCLQQHRVISQHIPAVKSRTLLGSDKVELWTEQAVWDAVLEGLQVIVSTPAVLHD 123
Query: 169 CLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK-----VPRIFGMTAS 223
+ H F+++ + LLIFDE HH K HP IM++FY P + + VPRI G+TAS
Sbjct: 124 AMTHGFVRISRLGLLIFDEAHHCIRK--HPTNMIMRNFYHPALQEYGPGAVPRILGLTAS 181
Query: 224 PVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSS 283
G + ++NS+ A ++L + P +R Y P++ + +S
Sbjct: 182 --AGSSREGLQTIEMNLNSVCTTPQAH------RQELLEYTHMPELRRVLYTPLMKENAS 233
Score = 277 (102.6 bits), Expect = 6.1e-64, Sum P(5) = 6.1e-64
Identities = 82/267 (30%), Positives = 131/267 (49%)
Query: 428 IVFVNRIVTARALSYILQNLKFLAS-WRCHFLVGVN--AGLKSM-----SRNAMKSILEK 479
++FV + +SY+L +R +G++ K+M S L+
Sbjct: 351 LIFVEQRAAVTVMSYLLSTHPSTRDRFRTGSFIGMSNSTNRKTMLGDLLSAKMQPDTLDD 410
Query: 480 FRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSG 539
FR G NL+VAT V +EG+D+ C +VI +++P+ SFIQ RGRAR S Y+ ++ +
Sbjct: 411 FRYGRKNLIVATDVLKEGIDVSACSVVICYNIPKGFESFIQRRGRARRQNSTYSMMLSTE 470
Query: 540 NQRE-LDLIKNFSK-------EEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGY 591
+ LD + F K E+ R E+ S D C+ + V S+GA ++A Y
Sbjct: 471 DDGSTLDKWQKFEKIMEEACLEDRRRTEELRALGSLDEDVCTR---FCVRSTGAILTAEY 527
Query: 592 GVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTI-CHIILPA--NAPIHQIVGTPQSSME 648
+ L +C LP + KP+F + + GG + +ILP+ N + + G E
Sbjct: 528 AMQHLVHFCDTLPRQNYVEDKPEFSFERNDGGLLRAKVILPSSVNPKVRRAEGKAWWKTE 587
Query: 649 -AAKKDACLKAIEDLHKLGALNDYLLP 674
AAKK+A A + L++ G +ND LLP
Sbjct: 588 RAAKKEAAFYAYKALYEHGLVNDNLLP 614
Score = 175 (66.7 bits), Expect = 6.1e-64, Sum P(5) = 6.1e-64
Identities = 48/143 (33%), Positives = 81/143 (56%)
Query: 1153 KTIADVVEALVGA-FIDDSGFKAATAFLKWIG-IQV-EFEASQVTNICISSKSFLPLSAS 1209
K +ADVVEAL+GA +ID KA + ++++ I++ E + + ++ +S P
Sbjct: 996 KVLADVVEALIGAAYIDGGLHKAQSCIVRFLPEIELPETKLPRPESMPMSKDHKKP--HL 1053
Query: 1210 LDMATLEILLGHQFLHRGLLLQAFVHPS--FNRLGGCYQRLEFLGDAVLDYLITSYLYSV 1267
+ LE +G+ F + LL++A HPS ++ YQRLEFLGDAVLD LI + +
Sbjct: 1054 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 1113
Query: 1268 YPKLKPGQLTDLRSMLVNNQAFA 1290
+ + + G++T ++ +VN A
Sbjct: 1114 HVECQQGEMTKIKHAIVNGHLLA 1136
Score = 130 (50.8 bits), Expect = 5.1e-51, Sum P(4) = 5.1e-51
Identities = 50/181 (27%), Positives = 78/181 (43%)
Query: 1245 YQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIF 1304
YQR EF GD+VL + + + L+ P G LT+ LV N A+DQ ++I
Sbjct: 908 YQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYII- 966
Query: 1305 DSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKI 1364
SN T + +I+ KVL D+VE+ +GA +D G L+
Sbjct: 967 -SNRF--TPRKWSAPLISEKLYASASTRSMSAKVLADVVEALIGAAYIDGG--LHKAQSC 1021
Query: 1365 MLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFIS 1424
++ FL P ++ +L P E + + D + P L + T KDK + +
Sbjct: 1022 IVRFL-PEIELPETKL-PRPESMPMSK----DHKKPHLIQQENLENHIGYTFKDKTLLME 1075
Query: 1425 A 1425
A
Sbjct: 1076 A 1076
Score = 110 (43.8 bits), Expect = 6.1e-64, Sum P(5) = 6.1e-64
Identities = 38/122 (31%), Positives = 51/122 (41%)
Query: 989 LPSIMHRLENLLVAIELKH--LLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILG 1046
+P I+ RLE LVA L L F + V + A+T Q +R E G
Sbjct: 861 IPVILDRLEAALVATRLCETVLRDIQFQDLRHV-----ITAITMPLAQAPTDYQRYEFFG 915
Query: 1047 DAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQPFDPCQF 1106
D+ LK+ V LF + EG LT V N+ L + A L YI F P ++
Sbjct: 916 DSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIISNRFTPRKW 975
Query: 1107 FA 1108
A
Sbjct: 976 SA 977
Score = 75 (31.5 bits), Expect = 3.5e-47, Sum P(4) = 3.5e-47
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 1023 MLLKALTTEKCQERFSLE---RLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVN 1079
+L++ALT C S++ RLE LGDA L + + H +GE+T+ + +A+
Sbjct: 1072 LLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAHHVECQQGEMTKIK-HAIV 1130
Query: 1080 NSNLL 1084
N +LL
Sbjct: 1131 NGHLL 1135
Score = 60 (26.2 bits), Expect = 4.0e-51, Sum P(4) = 4.0e-51
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 1153 KTIADVVEALVGA-FIDDSGFKAATA-FLKWIGI 1184
K +DVVE+++GA F+D G A A F++ +G+
Sbjct: 1232 KFFSDVVESIIGAIFVDSGGDLGACAGFIERLGL 1265
Score = 57 (25.1 bits), Expect = 6.1e-64, Sum P(5) = 6.1e-64
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 1337 KVLGDLVESSLGAILLDSGFNL 1358
K D+VES +GAI +DSG +L
Sbjct: 1232 KFFSDVVESIIGAIFVDSGGDL 1253
Score = 39 (18.8 bits), Expect = 4.5e-62, Sum P(5) = 4.5e-62
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 1454 PKTKSLESILKSSP 1467
PKT SL S L+ SP
Sbjct: 1169 PKTLSLYSYLRYSP 1182
Score = 37 (18.1 bits), Expect = 3.0e-43, Sum P(4) = 3.0e-43
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 988 LLPSIMHRLEN 998
L PSI+H L N
Sbjct: 1206 LCPSILHALNN 1216
>UNIPROTKB|I3L6Y9 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
OMA:FLEYDQE GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:CU915626
Ensembl:ENSSSCT00000022914 Uniprot:I3L6Y9
Length = 1565
Score = 316 (116.3 bits), Expect = 5.3e-61, Sum P(5) = 5.3e-61
Identities = 87/271 (32%), Positives = 137/271 (50%)
Query: 428 IVFVNRIVTARALSYILQNL----KFLASWRCHFLVGVNAGLKSMSRNAM--------KS 475
I+FV R TA L+ +++ LA +F+ G G K+ RN +
Sbjct: 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIG-KNQPRNKQMEAEFRKQEE 503
Query: 476 ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFL 535
+L KFR+ E NLL+AT + EEG+DI C LV+RFDLP S++QS+GRAR P S Y L
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML 563
Query: 536 VDSGN----QRELDLIKNFSKE-EDRMNREIMDRTSSDAFTCSEERIY-----KVDSSGA 585
D+ + +L K K ++ ++ + + ++ I+ + D G
Sbjct: 564 ADTDKIKSFEEDLKTYKAIEKILRNKCSKSVESGETDLEPVVDDDDIFPPYVLRPDDGGP 623
Query: 586 CISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHII-LPANAPIH-QIVGTP 643
++ + ++RYC++LP D F + PK + GT + LP N+P+ IVG P
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPP 683
Query: 644 QSSMEAAKKDACLKAIEDLHKLGALNDYLLP 674
S + A++ L E LHK+G L+D+L+P
Sbjct: 684 MSCIRLAERVVALICCEKLHKIGELDDHLMP 714
Score = 275 (101.9 bits), Expect = 5.3e-61, Sum P(5) = 5.3e-61
Identities = 81/239 (33%), Positives = 116/239 (48%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIR---KPQKSICIFLAPTVA 116
RKYQ+EL + A++ N IV L TG GKT IAVLL EL++ IR +FL +
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSAN 104
Query: 117 LVQQQAKVIEESIGFKVRTFCGGSKRLK-SHCDWEKEIDQYEVLVMIPQILLYCLYHRFI 175
V QQ + KV + + W +E +++VLVM + L L + ++
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSNLEVNASWTKEKWNQEFTKHQVLVMTCSVALNVLKNGYL 164
Query: 176 KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQAN 235
+ I LL+FDECH A + +HPY +IMK + PRI G+TAS + GK +
Sbjct: 165 ALSDINLLVFDECHLAIL--DHPYREIMK--LCENCPSCPRILGLTASILNGKCDPEE-- 218
Query: 236 LPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAE 294
L + I LE +L + + D L+ + S P V GP D S Y +L E
Sbjct: 219 LEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGP-FTDRSGLYERLLMELEE 276
Score = 156 (60.0 bits), Expect = 5.3e-61, Sum P(5) = 5.3e-61
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 1023 MLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSN 1082
++L+ALT + F+LERLE+LGD+FLK+A+ +LF + EG L+ RS V+N N
Sbjct: 1293 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1352
Query: 1083 LLKLAARNNLQVYIRDQPFDP 1103
L +L + L + FDP
Sbjct: 1353 LYRLGKKKGLPSRMVVSIFDP 1373
Score = 106 (42.4 bits), Expect = 4.2e-56, Sum P(4) = 4.2e-56
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 1227 GLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNN 1286
GL+LQA + + G +RLE LGD+ L + IT+YL+ YP G+L+ +RS V+N
Sbjct: 1292 GLILQALTLSNASD-GFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSN 1350
Score = 91 (37.1 bits), Expect = 5.3e-61, Sum P(5) = 5.3e-61
Identities = 73/311 (23%), Positives = 132/311 (42%)
Query: 722 PVRLNFYFMQFIPDPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGR-SVMTKLVPSGI 780
P LNF + P P D R FG+ +P + H V + G ++ +L SG
Sbjct: 782 PDELNFRRRKLYP-PEDTT-RCFGILTAKPIP-QIPHFPV--YTRSGEVTISIELKKSGF 836
Query: 781 MQAQQFQEMFLKVILDRSEFNSEFVPLGKD--DYCESSSSTFYLLLPV-IFHKNS---VD 834
+ Q E+ + L + F S + L K ++ + + + Y +LP+ + + +S +D
Sbjct: 837 TLSLQMLELITR--LHQYIF-SHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDID 893
Query: 835 WKIIRRCLSSPV-FGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSLVYATHKKW---- 889
+K + S G P +++ P L+ D +++++ ++ +
Sbjct: 894 FKFMEDIEKSEARIGIPSTKYSKET-PFVFKLE---------DYQDAVIIPRYRNFDQPH 943
Query: 890 -FYLVTNIVFEKNGYSPYKDSDSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLL-- 946
FY V ++ + S + + + ++ + Y + L + QPLL NLL
Sbjct: 944 RFY-VADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTP 1002
Query: 947 -H-NRK-----LEDSESHELE-EYFDD---LPPELCQLKIIGFSKDIGSSLSLLPSIMHR 995
H N+K L +E + + E + L PELC + I S + LPSI++R
Sbjct: 1003 RHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPAS--LWRKAVCLPSILYR 1060
Query: 996 LENLLVAIELK 1006
L LL A EL+
Sbjct: 1061 LHCLLTAEELR 1071
Score = 49 (22.3 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 1446 KLKAAGYVPKT-KSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQGGSS 1504
K+K+ KT K++E IL++ ++ + ET + V DD++F + GG
Sbjct: 568 KIKSFEEDLKTYKAIEKILRNKC---SKSVESGETDLEPVVDDDDIFPPYVLRPDDGGPR 624
Query: 1505 CDIGS 1509
I +
Sbjct: 625 VTINT 629
Score = 46 (21.3 bits), Expect = 5.3e-61, Sum P(5) = 5.3e-61
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 1153 KTIADVVEALVGAF 1166
K+IAD VEAL+G +
Sbjct: 1552 KSIADCVEALLGCY 1565
Score = 41 (19.5 bits), Expect = 9.6e-05, Sum P(3) = 9.6e-05
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 231 SAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVI 278
SA LP ++ + + LD +ED E E+ + P + + P +
Sbjct: 874 SAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFV 921
>UNIPROTKB|A4RHU9 [details] [associations]
symbol:DCL2 "Dicer-like protein 2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS00690 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00490 SMART:SM00535 GO:GO:0005524
GO:GO:0046872 GO:GO:0051607 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 OrthoDB:EOG4JWZNK
RefSeq:XP_003715365.1 GeneID:2683150 KEGG:mgr:MGG_12357
Uniprot:A4RHU9
Length = 1485
Score = 428 (155.7 bits), Expect = 1.2e-56, Sum P(5) = 1.2e-56
Identities = 162/513 (31%), Positives = 246/513 (47%)
Query: 49 QKTDKDPKQI-ARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSI 107
Q + P+ I AR YQLE+ + +M++NIIV + TG GKT +AVL I A L R P +
Sbjct: 54 QPSGNGPRSIIARAYQLEMFQASMQQNIIVSMDTGSGKTQVAVLRIR--AELERTPPEKR 111
Query: 108 CIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCD---WEKEIDQYEVLVMIPQ 164
FLAPTVAL QQ +VI I G + S D W+ + V+V
Sbjct: 112 VWFLAPTVALCAQQYEVIRSQIKVANSIVMTGDDNVDSWSDVQTWDAVLANVRVVVCTYM 171
Query: 165 ILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK---VPRIFGMT 221
IL L H F+ M+ I+LL+ DE H+ K P IMK FY P VP I G+T
Sbjct: 172 ILFEALSHAFVTMDSISLLVMDEAHNCTGK--FPGRLIMKRFYMPRKSAGDHVPHILGLT 229
Query: 222 ASPVVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQY------G 275
ASPV+ S+ +L S++S+ + +++ E+L + V P + V Y
Sbjct: 230 ASPVMKSDLSSMEDLESSLDSV-----CRGPTLQ-REELFANVHQPTMTVTTYKECDLRS 283
Query: 276 PVINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENL 335
PV + + + + + +I + Y+ L + +SLR + L +L + ++ L
Sbjct: 284 PVQYTRNMNNLHLAFENLDIAEDPYVLHLMGQ-RTPKSLRELDRILTKLDTYTQNQMKAL 342
Query: 336 G-VCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRR-DGIASD 393
+L + D + N ++E N +D + + R GI +
Sbjct: 343 QRKSSSLFRELGQWAVDSYIYN-VVEKVSN-LDARSSWLGGWLDDEQRYLHRAIQGINA- 399
Query: 394 LSCIEVLKEP-FFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFL-A 451
L + P S KL L+ IL + + IVFV TA LS +L + + A
Sbjct: 400 LPVSAAIPAPEMTSIKLQVLLRILRGY--EGSPVGIVFVKERATAGILSQLLAIIPDINA 457
Query: 452 SWRCHFLVGVNAGL-KSMSRNAMKS------ILEKFRSGELNLLVATKVGEEGLDIQTCC 504
++ +VG + + + M+ + + LEKFRSG +NLLVAT V EEG+D+ C
Sbjct: 458 RYKVGCMVGTSRYMSRKMNIHEVLQQGDDLLALEKFRSGAINLLVATSVLEEGIDVPVCN 517
Query: 505 LVIRFDLPETVASFIQSRGRARMPQSEYAFLVD 537
LVI FD+P + SFIQ RGRARM +S+ +++
Sbjct: 518 LVICFDMPANLKSFIQRRGRARMRESKLHLMIE 550
Score = 167 (63.8 bits), Expect = 1.2e-56, Sum P(5) = 1.2e-56
Identities = 47/153 (30%), Positives = 82/153 (53%)
Query: 1150 LHKKTIADVVEALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNICISSKSF--LPLS 1207
+ KT+ADV EAL+GA + G A + + + + + + + +PL
Sbjct: 1106 MSSKTLADVTEALIGAAYIEGGMSKALRCISLMIPNERWRSLDESRAVLYQVALNDIPLP 1165
Query: 1208 ASLDMATLEILLGHQFLHRGLLLQAFVHPSFN---RLGGCYQRLEFLGDAVLDYLITSYL 1264
++L LE LLG+ F + LL++A H S+N G +RLEFLGD+VLD+++ + L
Sbjct: 1166 STL--GPLEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARL 1223
Query: 1265 YSVY-PK-LKPGQLTDLRSMLVNNQAFANVAVD 1295
+SV P ++ + LR+ +VN + +A++
Sbjct: 1224 FSVKDPAPIEHYNMHLLRTAVVNGEFLGFLAME 1256
Score = 102 (41.0 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 36/132 (27%), Positives = 61/132 (46%)
Query: 1228 LLLQAFVHPSFNRLGGCYQRLEFLGDAVLDY--LITSYLYSVYPKLKPGQLTDLRSMLVN 1285
L++ S RL Y+R+EFLGDAVL +T +++ G L+ L+ LV+
Sbjct: 1007 LVMMVITSSSAGRLTN-YERVEFLGDAVLKLGAAVTCATNNLH--FPEGYLSLLKDRLVS 1063
Query: 1286 NQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVES 1345
N A +F+I L + N + P++TR++ K L D+ E+
Sbjct: 1064 NSRLCKAATALGLDQFIITRQYSLKQW-RNMLTAPEPPTNTRKMSS-----KTLADVTEA 1117
Query: 1346 SLGAILLDSGFN 1357
+GA ++ G +
Sbjct: 1118 LIGAAYIEGGMS 1129
Score = 97 (39.2 bits), Expect = 1.2e-56, Sum P(5) = 1.2e-56
Identities = 41/138 (29%), Positives = 63/138 (45%)
Query: 963 FDDLPPE-LCQLKIIGFSK-DIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVS 1020
FD + PE LC + + +G L+PSI +E VA EL + + ++
Sbjct: 950 FDYIIPEQLCTFDTVPATLVQLGM---LVPSITQAMEPYFVAQELLRRTALGSLDFKDI- 1005
Query: 1021 AEMLLKALTTEKCQERFSLERLEILGDAFLKY--AVGRHLFLLHDTVDEGELTRRRSNAV 1078
++++ +T+ + ER+E LGDA LK AV LH EG L+ + V
Sbjct: 1006 -DLVMMVITSSSAGRLTNYERVEFLGDAVLKLGAAVTCATNNLH--FPEGYLSLLKDRLV 1062
Query: 1079 NNSNLLKLAARNNLQVYI 1096
+NS L K A L +I
Sbjct: 1063 SNSRLCKAATALGLDQFI 1080
Score = 82 (33.9 bits), Expect = 1.2e-56, Sum P(5) = 1.2e-56
Identities = 40/149 (26%), Positives = 66/149 (44%)
Query: 540 NQRELDLIKNFSKEEDRMN-REIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHR 598
+ RELD + +EED M+ + RT++ T + + + + V
Sbjct: 574 DMRELDHLAQV-EEEDEMDVPPLHSRTTAAKVTVDDAKGHLEHFCRVVTRSQQYVDASPE 632
Query: 599 YCSKLPHDEFFNPKPKFYYFDDLGGTICHIILPANAP--IHQIVGTPQSSMEA-AKKDAC 655
Y F KP LG T+ +LPA+ P + Q + E AKKDA
Sbjct: 633 YLVTTKTTAFVGGKP----IPILGVTV---LLPASLPPNLRQAHSSRDWISERNAKKDAA 685
Query: 656 LKAIEDLHKLGALNDYLLP-QEDNATEDE 683
L+A + L++ G +N++LLP +E + + E
Sbjct: 686 LQAYKMLYEAGLINEHLLPIRESDFVDRE 714
Score = 65 (27.9 bits), Expect = 7.0e-41, Sum P(4) = 7.0e-41
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 1038 SLERLEILGDAFLKYAVGRHLFLLHDT--VDEGELTRRRSNAVNNSNLLKLA 1087
SLERLE LGD+ L + V LF + D ++ + R+ VN L LA
Sbjct: 1203 SLERLEFLGDSVLDFVVVARLFSVKDPAPIEHYNMHLLRTAVVNGEFLGFLA 1254
Score = 61 (26.5 bits), Expect = 2.7e-44, Sum P(4) = 2.7e-44
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 1128 QYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGA-FIDDSGFKAATAFLKWIGI 1184
++ R P DL A +R SK H +DV+EA++GA ++D + ++ +GI
Sbjct: 1323 EHGQRYPWDLLARLRISKVH--------SDVLEAVIGAVWVDSGSLEECEKLIERVGI 1372
Score = 60 (26.2 bits), Expect = 1.2e-56, Sum P(5) = 1.2e-56
Identities = 25/90 (27%), Positives = 46/90 (51%)
Query: 1334 RCPKVLGDLVESSLGAILLDSGFNLNTVWKIM-----LSFLDPILKFSNLQLNPIRELLE 1388
R KV D++E+ +GA+ +DSG +L K++ L +LD L+ L+P EL
Sbjct: 1337 RISKVHSDVLEAVIGAVWVDSG-SLEECEKLIERVGILRYLDRALRDGVKILHPKEELGR 1395
Query: 1389 LCNSYDLDLQFPSLKKGGKFLAEA-KVTGK 1417
+ + + + K+ + AE +V+G+
Sbjct: 1396 VAQNNKVVYKVDKAKRAAR--AEVYEVSGE 1423
>UNIPROTKB|B3KRG4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 UniGene:Hs.87889 HGNC:HGNC:17098 ChiTaRS:DICER1
EMBL:AK091513 IPI:IPI01025259 SMR:B3KRG4 STRING:B3KRG4
Ensembl:ENST00000556045 UCSC:uc001ydy.1 HOVERGEN:HBG092134
Uniprot:B3KRG4
Length = 820
Score = 346 (126.9 bits), Expect = 2.4e-40, Sum P(4) = 2.4e-40
Identities = 85/220 (38%), Positives = 125/220 (56%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ ++F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 571 INYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 630
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 631 TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 690
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L TVW++ + P++ KFS N+ +
Sbjct: 691 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRS 750
Query: 1382 PIRELLELCNSYDLDLQFPSLKK--GGKFLAEAKVTGKDK 1419
P+RELLE+ +F ++ GK +V GK K
Sbjct: 751 PVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKGK 787
Score = 156 (60.0 bits), Expect = 2.4e-40, Sum P(4) = 2.4e-40
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 1023 MLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSN 1082
++L+ALT + F+LERLE+LGD+FLK+A+ +LF + EG L+ RS V+N N
Sbjct: 194 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 253
Query: 1083 LLKLAARNNLQVYIRDQPFDP 1103
L +L + L + FDP
Sbjct: 254 LYRLGKKKGLPSRMVVSIFDP 274
Score = 76 (31.8 bits), Expect = 2.4e-40, Sum P(4) = 2.4e-40
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
K+IAD VEAL+G ++ G +AA FL +G++V
Sbjct: 455 KSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 488
Score = 38 (18.4 bits), Expect = 2.4e-40, Sum P(4) = 2.4e-40
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 853 SVDRKSLPSHGPLQLHNGWSSESDVENSLVY 883
SV+ ++L S P +LH S++ N L Y
Sbjct: 48 SVNCRTLLSESPGKLHVEVSADLTAINGLSY 78
>RGD|1309381 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001525 "angiogenesis" evidence=ISO] [GO:0001932 "regulation of
protein phosphorylation" evidence=ISO] [GO:0001942 "hair follicle
development" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004525 "ribonuclease III activity" evidence=ISO]
[GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment"
evidence=IDA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0006915 "apoptotic process" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0009791 "post-embryonic development"
evidence=ISO] [GO:0010070 "zygote asymmetric cell division"
evidence=ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISO] [GO:0010628 "positive regulation of
gene expression" evidence=ISO] [GO:0014040 "positive regulation of
Schwann cell differentiation" evidence=ISO] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0019827 "stem
cell maintenance" evidence=ISO] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=ISO] [GO:0021675 "nerve
development" evidence=ISO] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=ISO] [GO:0021987 "cerebral cortex
development" evidence=ISO] [GO:0030324 "lung development"
evidence=ISO] [GO:0030326 "embryonic limb morphogenesis"
evidence=ISO] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=IDA] [GO:0030425 "dendrite" evidence=IDA]
[GO:0030426 "growth cone" evidence=IDA] [GO:0031054 "pre-miRNA
processing" evidence=ISO] [GO:0031069 "hair follicle morphogenesis"
evidence=ISO] [GO:0031641 "regulation of myelination" evidence=ISO]
[GO:0031643 "positive regulation of myelination" evidence=ISO]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISO] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0035198 "miRNA binding"
evidence=ISO] [GO:0035264 "multicellular organism growth"
evidence=ISO] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=ISO] [GO:0042981 "regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0045069 "regulation of
viral genome replication" evidence=ISO] [GO:0045595 "regulation of
cell differentiation" evidence=ISO] [GO:0045664 "regulation of
neuron differentiation" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048536 "spleen development" evidence=ISO]
[GO:0048565 "digestive tract development" evidence=ISO] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=ISO]
[GO:0048730 "epidermis morphogenesis" evidence=ISO] [GO:0048754
"branching morphogenesis of an epithelial tube" evidence=ISO]
[GO:0048812 "neuron projection morphogenesis" evidence=ISO]
[GO:0050767 "regulation of neurogenesis" evidence=ISO] [GO:0051225
"spindle assembly" evidence=ISO] [GO:0051607 "defense response to
virus" evidence=ISO] [GO:0051726 "regulation of cell cycle"
evidence=ISO] [GO:0055013 "cardiac muscle cell development"
evidence=ISO] [GO:0060119 "inner ear receptor cell development"
evidence=ISO] [GO:0060253 "negative regulation of glial cell
proliferation" evidence=ISO] [GO:0060576 "intestinal epithelial
cell development" evidence=ISO] [GO:0070173 "regulation of enamel
mineralization" evidence=ISO] [GO:0071335 "hair follicle cell
proliferation" evidence=ISO] [GO:2000630 "positive regulation of
miRNA metabolic process" evidence=ISO] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1309381 GO:GO:0030424 GO:GO:0030425 Gene3D:3.30.160.20
GO:GO:0030426 GO:GO:0003725 GO:GO:0005793 GO:GO:0010626
eggNOG:COG1111 GO:GO:0004525 GO:GO:0035196 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
GO:GO:0031643 GO:GO:0014040 HOVERGEN:HBG092134 IPI:IPI00365891
EMBL:BC098796 UniGene:Rn.205881 STRING:Q4G034 PhosphoSite:Q4G034
UCSC:RGD:1309381 InParanoid:Q4G034 Genevestigator:Q4G034
Uniprot:Q4G034
Length = 401
Score = 336 (123.3 bits), Expect = 8.3e-34, Sum P(2) = 8.3e-34
Identities = 77/188 (40%), Positives = 112/188 (59%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQL 1276
+ + F ++ LLQAF H S+ N + CYQRLEFLGDA+LDYLIT +LY + PG L
Sbjct: 152 INYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVL 211
Query: 1277 TDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR--------- 1327
TDLRS LVNN FA++AV ++K+ S L I+++V + + + +
Sbjct: 212 TDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 271
Query: 1328 ----EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLN 1381
E +E PK +GD+ ES GAI +DSG +L VW++ + P++ KFS N+ +
Sbjct: 272 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRS 331
Query: 1382 PIRELLEL 1389
P+RELLE+
Sbjct: 332 PVRELLEM 339
Score = 76 (31.8 bits), Expect = 8.3e-34, Sum P(2) = 8.3e-34
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 1153 KTIADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
K+IAD VEAL+G ++ G +AA FL +G++V
Sbjct: 38 KSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 71
Score = 39 (18.8 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 707 LVPAVLRQSWTKSQYPVRLNFYFMQFIP 734
++P + R S K+ YP + N Q P
Sbjct: 71 VLPVIKRTSRDKASYPAQENSSSQQKSP 98
>ZFIN|ZDB-GENE-081104-438 [details] [associations]
symbol:ifih1 "interferon induced with helicase C
domain 1" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-081104-438
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 Gene3D:1.10.533.10
InterPro:IPR011029 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00510000046789 EMBL:AL954669 EMBL:CABZ01064081
EMBL:CABZ01064082 EMBL:CABZ01064083 IPI:IPI00492508
Ensembl:ENSDART00000003913 Uniprot:F1R4B9
Length = 997
Score = 275 (101.9 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 109/398 (27%), Positives = 186/398 (46%)
Query: 175 IKMELIALLIFDECHHAQVKS--NHPYAKIMKDFYKPDIMK--------VPRIFGMTASP 224
I++ L++ DECHH + NH + +K + ++K +P+I G+TASP
Sbjct: 421 IELSQFTLMVIDECHHTKKGGVYNHIMIRYLKQKNRNQLLKKQDKTLVPIPQILGLTASP 480
Query: 225 VVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQ--------YGP 276
VG GA +Q + I + LDA + E+ E+ +P R+ + +G
Sbjct: 481 GVG-GAVSQQMAEEHILQICANLDAFTIKTKTFEEEEA--KTPFKRIAKAEERKEDPFGD 537
Query: 277 VINDTSSSYVTCSE--QLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLEN 334
VI T ++ L E + Y + +K +N K+ N+ +++ C E+
Sbjct: 538 VIKKIMDEIHTHADLQPLCEPGTQNYEQWVVQKE------QNAAKEENQ---NVRVCAEH 588
Query: 335 LGVCG-ALHASYILLSGD-----ETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRD 388
L ALH S + D + NE ++ + + ++ +E F +D
Sbjct: 589 LRQYNEALHQSNTIRMSDAFRFLDKYHNEELKTKSSPDEEGNITITD--TERFLFTLFKD 646
Query: 389 GIASDLSCIEVLKEPFFSKKLLRLIG--ILSTFRLQQHMKCIVFVNRIVTARAL-SYILQ 445
A L E++ +P + L + IL F ++ + I+F ++A AL +I +
Sbjct: 647 KKAK-LQ--ELMGKPQYENNNLAQLKTIILKEFSTREKARGIIFTQTRLSAIALCQWIEE 703
Query: 446 NLKF-LASWRCHFLVGVN--AGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQT 502
N KF R +L+G + +K M+ K +L++FR+GE+NLL+AT V EEGLDI
Sbjct: 704 NPKFDEVGVRASYLIGGGDQSVVKPMTAAEQKDVLKRFRTGEINLLIATTVAEEGLDIAE 763
Query: 503 CCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGN 540
C +VIR+ L + IQ+RGR R S Y + ++G+
Sbjct: 764 CNVVIRYCLVTNEVAMIQARGRGRAEDSSYTLVAEAGS 801
Score = 146 (56.5 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 53/169 (31%), Positives = 81/169 (47%)
Query: 60 RKYQLELCKKAMEE-NIIVYLGTGCGKTHIAVLLIYELAHLIRKP---QKSICIFLAPTV 115
R YQ+E+ + A+EE NIIV L TG GKT +AV + E HL RK QK + L V
Sbjct: 298 RDYQMEVARPALEEKNIIVCLPTGSGKTRVAVFITKE--HLERKQRMGQKGKVVVLVNKV 355
Query: 116 ALVQQQAKVIEESI---GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH 172
LV+Q K + V G S+ LK + + I++ ++++ QIL L
Sbjct: 356 PLVEQHYKAEFGRFLKHQYSVERVSGASQ-LK--ISFPQIIEKNDIIICTAQILENSLAK 412
Query: 173 RF------IKMELIALLIFDECHHAQVKS--NHPYAKIMKDFYKPDIMK 213
I++ L++ DECHH + NH + +K + ++K
Sbjct: 413 AKNGDEDGIELSQFTLMVIDECHHTKKGGVYNHIMIRYLKQKNRNQLLK 461
>TAIR|locus:2092409 [details] [associations]
symbol:RTL2 "RNAse THREE-like protein 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS;IMP]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0016075
GO:GO:0006364 EMBL:AB024036 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 HSSP:O67082
EMBL:AY042815 EMBL:AY081681 IPI:IPI00517285 RefSeq:NP_566661.1
UniGene:At.8183 ProteinModelPortal:Q9LTQ0 SMR:Q9LTQ0 IntAct:Q9LTQ0
EnsemblPlants:AT3G20420.1 GeneID:821587 KEGG:ath:AT3G20420
TAIR:At3g20420 HOGENOM:HOG000237951 InParanoid:Q9LTQ0 OMA:ANISTEK
PhylomeDB:Q9LTQ0 ProtClustDB:CLSN2688595 Genevestigator:Q9LTQ0
Uniprot:Q9LTQ0
Length = 391
Score = 292 (107.8 bits), Expect = 3.8e-29, Sum P(3) = 3.8e-29
Identities = 77/250 (30%), Positives = 130/250 (52%)
Query: 1204 LPLSASLD-MATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITS 1262
+P+S+ ++ M +E +L ++F ++ LL +A H S Y+RLEF+GD+ + I++
Sbjct: 51 VPVSSEMESMEAVEKILNYKFSNKSLLKEAITHTSCTDFPS-YERLEFIGDSAIGLAISN 109
Query: 1263 YLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMIT 1322
YLY YP L+P L+ LR+ V+ + A V+++ Y FL ++ L E + + + +
Sbjct: 110 YLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSE-AVG 168
Query: 1323 PSSTREVKEGP--RCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQL 1380
V G + PKVL DL ES GA+ +D F+L +W I L+PI+ +LQ
Sbjct: 169 KEDDLSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQK 228
Query: 1381 NP--IRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIR- 1437
P + L +LC+ + + + K G +A V D ++ S A N K+ R
Sbjct: 229 QPQPVSMLFKLCHKHKKRIDIKNWKDGNVSIA---VIYLDDELLASGRAEN---KDIARL 282
Query: 1438 IASQQLFSKL 1447
IA+++ KL
Sbjct: 283 IAAKEALRKL 292
Score = 62 (26.9 bits), Expect = 3.8e-29, Sum P(3) = 3.8e-29
Identities = 18/84 (21%), Positives = 32/84 (38%)
Query: 1517 LQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQ 1576
+Q A+++L E+C W P + ++ K F ++I EK + G+ Q
Sbjct: 309 IQLTHAKTKLNEICLKKKWPKPIYSVEEDRSSVQGKRFVCSAKIKI-TEEKTLYMKGDEQ 367
Query: 1577 XXXXXXXXXXXXXMLWCLEREGYL 1600
M+ L + YL
Sbjct: 368 SKIKKAESSSAYHMIRALRKSHYL 391
Score = 38 (18.4 bits), Expect = 3.8e-29, Sum P(3) = 3.8e-29
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 630 LPANAPIHQIVGTPQSSMEAAKKDACLKAIEDLHKL 665
LP++A IH+ + S + + ++++E + K+
Sbjct: 31 LPSSADIHRFYNSLSPSAPSVPVSSEMESMEAVEKI 66
>DICTYBASE|DDB_G0294407 [details] [associations]
symbol:helF "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0040029 "regulation of gene
expression, epigenetic" evidence=IMP] [GO:0031149 "sorocarp stalk
cell differentiation" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00358 SMART:SM00490
InterPro:IPR014720 dictyBase:DDB_G0294407 GO:GO:0005524
GO:GO:0005634 Gene3D:3.30.160.20 GenomeReviews:CM000151_GR
EMBL:AAFI02000008 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0040029 GO:GO:0008026 GO:GO:0003724
GO:GO:0031149 eggNOG:COG1111 RefSeq:XP_001134628.1
ProteinModelPortal:Q86L44 EnsemblProtists:DDB0233379 GeneID:8618629
KEGG:ddi:DDB_G0294407 OMA:ANIQSRG ProtClustDB:CLSZ2733552
Uniprot:Q86L44
Length = 837
Score = 214 (80.4 bits), Expect = 7.4e-28, Sum P(2) = 7.4e-28
Identities = 65/178 (36%), Positives = 97/178 (54%)
Query: 56 KQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTV 115
K R YQ EL +K+ME++II L TG GKT I+ L+I ++ L P K I +F+ +
Sbjct: 229 KSKPRDYQCELYRKSMEKDIICCLPTGLGKTLISCLVIKKMKQL--NPSKQI-VFIVDRI 285
Query: 116 ALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEID---QYEVLVMIPQILLYCLYH 172
LV QQ+ VIE G KV L +H + K + +++VLV+I + L +
Sbjct: 286 PLVIQQSDVIETETGLKV---------LSAHGETFKPVQLKQRFDVLVVIGDLFNKLLSN 336
Query: 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYK--PDIMKVPRIFGMTASPVVGK 228
+ + L++ DE HH VK H +AK+++D P+I P+I G+TASP GK
Sbjct: 337 GDLNILSFCLIVIDEAHHI-VKE-HSFAKLLRDKLNTIPEICH-PKILGLTASPA-GK 390
Score = 194 (73.4 bits), Expect = 7.4e-28, Sum P(2) = 7.4e-28
Identities = 57/173 (32%), Positives = 90/173 (52%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKF---L 450
L C E + + KL + IL + +K I+FV A+ + +L L+
Sbjct: 554 LPCDEEIADSI--SKLEIALQILDE-KKSDDLKAIIFVKTRDVAKKVYSLLDQLRMGDRF 610
Query: 451 ASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFD 510
+ + + +VG + + MS ++ K +E+FRS + N++VAT V EEG D+ C +VIR D
Sbjct: 611 SFIKPNLVVG-HGSIGGMSISSQKKAIEEFRSDQCNVIVATSVVEEGFDVPECNIVIRLD 669
Query: 511 LPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMD 563
P TV + IQSRGR R S + +V + RE D I F K ++R E ++
Sbjct: 670 PPTTVTANIQSRGRLRNRDSYFYGIVKVDDPRE-DNIYEFFKNQERYLEEAIN 721
>UNIPROTKB|E1BJZ0 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0016925 "protein sumoylation" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0042981 "regulation
of apoptotic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0042981
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0045087
GO:GO:0009615 GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
SUPFAM:SSF47986 GO:GO:0043021 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016925 GeneTree:ENSGT00510000046789
CTD:64135 KO:K12647 OMA:KCGQAWG EMBL:DAAA02004416 IPI:IPI00702873
RefSeq:XP_002685384.1 RefSeq:XP_615590.2 UniGene:Bt.24098
Ensembl:ENSBTAT00000010703 GeneID:535490 KEGG:bta:535490
NextBio:20876765 Uniprot:E1BJZ0
Length = 1021
Score = 235 (87.8 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
Identities = 58/169 (34%), Positives = 100/169 (59%)
Query: 406 SKKLLRLIG-ILSTF-RLQQHMKCIVFVNRIVTARALS-YILQNLKFL-ASWRCHFLVGV 461
++KL++L I+ + R + + I+F +A ALS +I++N KF + H L+G
Sbjct: 693 NEKLIKLRNTIMEQYSRTEGSARGIIFTKTRQSAYALSQWIIENEKFSEVGVKAHHLIGA 752
Query: 462 --NAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFI 519
++ K M++N K ++ KFR+G++NLL+AT V EEGLDI+ C +VIR+ L + +
Sbjct: 753 GHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMV 812
Query: 520 QSRGRARMPQSEYAFLVDSGNQR-ELDLIKNFSKEEDRMNREIMDRTSS 567
Q+RGRAR +S Y + SG+ E + + +F ++M + +DR +
Sbjct: 813 QARGRARADESTYVLVAQSGSGVVERETVNDF---REKMMYKAIDRVQN 858
Score = 176 (67.0 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
Identities = 70/227 (30%), Positives = 111/227 (48%)
Query: 48 AQKTDKDPKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKP--Q 104
AQ+ +P+ R YQLE+ + A+E +NII+ L TG GKT +AV + + HL +K +
Sbjct: 296 AQRASPEPELNLRPYQLEVAQPALEGKNIIICLPTGSGKTRVAVYIAKD--HLDKKKASE 353
Query: 105 KSICIFLAPTVALVQQQAKVIEESIGFKVR----TFCGGSKRLKSHCDWEKEIDQYEVLV 160
+ L V LV+Q + +E F + T G +LK + + + ++V++
Sbjct: 354 HGKVMVLVNKVPLVEQLFR--KEFKPFLKKWYHVTRLSGDTQLK--ITFPEVVKSHDVII 409
Query: 161 MIPQILLYCLYHRF------IKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPD---- 210
QIL L + I++ +L+I DECHH ++ Y IM+ F K
Sbjct: 410 STAQILENSLLNSEEGEDDGIELSDFSLIIIDECHHTNKEA--VYNNIMRRFLKQKLKNN 467
Query: 211 --------IMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDA 249
++ +P+I G+TASP VG GA QA + I + LDA
Sbjct: 468 KLKKENKPVIPLPQIVGLTASPGVG-GAKKQAKAEEHILKICANLDA 513
Score = 37 (18.1 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
Identities = 16/70 (22%), Positives = 29/70 (41%)
Query: 1138 NAEVRCSK-GHHW----LHKKTIADV--VEALVGAFIDDSGFKAATAFLKWIGIQVEFEA 1190
N E+ C+K G W +HK ++ V F ++ K + KW+ + + F
Sbjct: 952 NGEIICNKCGQAWGTMMVHKGLDLPCLKIKNFVVVFQNNLPKKQ---YKKWVELPITFPD 1008
Query: 1191 SQVTNICISS 1200
+ C+ S
Sbjct: 1009 LNYSEYCLFS 1018
>MGI|MGI:2442858 [details] [associations]
symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 58"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0002230 "positive regulation of defense response
to virus by host" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=ISO;IDA] [GO:0003727
"single-stranded RNA binding" evidence=ISO;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005856 "cytoskeleton" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005923 "tight
junction" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=ISO] [GO:0009597 "detection of virus" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0015629 "actin
cytoskeleton" evidence=ISO] [GO:0016020 "membrane" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0030054 "cell junction" evidence=IEA] [GO:0030334 "regulation
of cell migration" evidence=ISO] [GO:0032587 "ruffle membrane"
evidence=ISO] [GO:0032727 "positive regulation of interferon-alpha
production" evidence=ISO] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISO;IMP] [GO:0039529 "RIG-I
signaling pathway" evidence=ISO] [GO:0042802 "identical protein
binding" evidence=ISO] [GO:0042993 "positive regulation of
transcription factor import into nucleus" evidence=ISO] [GO:0042995
"cell projection" evidence=IEA] [GO:0043330 "response to exogenous
dsRNA" evidence=IMP] [GO:0045087 "innate immune response"
evidence=ISO;IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS50209 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2442858
GO:GO:0005829 GO:GO:0005524 GO:GO:0046872 GO:GO:0015629
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0045087
GO:GO:0002230 GO:GO:0009615 GO:GO:0030334 GO:GO:0005923
EMBL:AL831793 EMBL:CH466538 GO:GO:0003690 Reactome:REACT_107772
GO:GO:0032587 GO:GO:0003725 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0042993 GO:GO:0043330 GO:GO:0032727 eggNOG:COG1111
GeneTree:ENSGT00510000046789 GO:GO:0032728 CTD:23586
HOGENOM:HOG000230911 HOVERGEN:HBG052325 KO:K12646 OMA:KCKAFAC
OrthoDB:EOG4SQWW0 GO:GO:0009597 GO:GO:0039529 EMBL:AY553221
EMBL:AK049305 EMBL:AK078287 EMBL:AK087261 IPI:IPI00273914
IPI:IPI00458717 IPI:IPI00655015 IPI:IPI00655142 RefSeq:NP_766277.3
UniGene:Mm.86382 PDB:3TBK PDBsum:3TBK ProteinModelPortal:Q6Q899
SMR:Q6Q899 STRING:Q6Q899 PhosphoSite:Q6Q899 PaxDb:Q6Q899
PRIDE:Q6Q899 DNASU:230073 Ensembl:ENSMUST00000037907 GeneID:230073
KEGG:mmu:230073 UCSC:uc008shh.1 UCSC:uc012dbu.1 InParanoid:A2AP28
EvolutionaryTrace:Q6Q899 NextBio:379764 Bgee:Q6Q899
CleanEx:MM_DDX58 Genevestigator:Q6Q899
GermOnline:ENSMUSG00000040296 Uniprot:Q6Q899
Length = 926
Score = 233 (87.1 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 80/262 (30%), Positives = 136/262 (51%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKP--QKSICIFLAPTVA 116
R YQLEL A + +N I+ TGCGKT ++ LLI E HL + P QK +F A +
Sbjct: 245 RNYQLELALPAKKGKNTIICAPTGCGKTFVS-LLICE-HHLKKFPCGQKGKVVFFANQIP 302
Query: 117 LVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
+ +QQA V E +G+ + + G + S + I+ +++++ PQIL+ L +
Sbjct: 303 VYEQQATVFSRYFERLGYNIASISGATSDSVSV---QHIIEDNDIIILTPQILVNNLNNG 359
Query: 174 FI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK----VPRIFGMTASPVVGK 228
I + + L+IFDECH+ NHPY +IM + + + +P++ G+TAS VG
Sbjct: 360 AIPSLSVFTLMIFDECHNTS--KNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGD 417
Query: 229 GASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSPVVRVYQYGPVINDTSSSYV 286
+A+ + + I L LDA V + ++ +LE V P ++ + V + TS+++
Sbjct: 418 AKTAEEAM-QHICKLCAALDASVIATVRDNVAELEQVVYKPQ-KISR--KVASRTSNTFK 473
Query: 287 TCSEQLAEIKREQYISALSRKL 308
QL + + E+ +S +L
Sbjct: 474 CIISQLMK-ETEKLAKDVSEEL 494
Score = 160 (61.4 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 55/170 (32%), Positives = 83/170 (48%)
Query: 398 EVLKEPFFSKKLLR-LIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRC 455
+V ++P LR L +L + L+ K I+FV AL ++ L+ +
Sbjct: 600 KVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKP 659
Query: 456 HFLVGVNAGLKS--MSRNAMKSILEKFR-SGELNLLVATKVGEEGLDIQTCCLVIRFDLP 512
L G ++ M+ A K +LE FR SG+ N+L+AT V +EG+DI C LVI ++
Sbjct: 660 GILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYV 719
Query: 513 ETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
V IQ+RGR R S+ L S + E + N KE+ MN I+
Sbjct: 720 GNVIKMIQTRGRGRARDSKCFLLTSSADVIEKEKA-NMIKEKI-MNESIL 767
>UNIPROTKB|I3LGW3 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00510000046789 OMA:KCKAFAC
EMBL:FP340205 Ensembl:ENSSSCT00000026775 Uniprot:I3LGW3
Length = 960
Score = 241 (89.9 bits), Expect = 9.1e-26, Sum P(2) = 9.1e-26
Identities = 75/221 (33%), Positives = 115/221 (52%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ--KSICIFLAPTVA 116
RKYQLEL A +N I+ TGCGKT ++ LLI E HL + PQ K +F A +
Sbjct: 243 RKYQLELALPAQNGKNTIICAPTGCGKTFVS-LLICE-HHLKKFPQGRKGKVVFFAIQLP 300
Query: 117 LVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
+ +QQ V E +G+KV G + + C E+ ++ +++++ PQIL+ CL +
Sbjct: 301 VYEQQKSVFSKHFERLGYKVAGISGATS--DTVCV-EQIVENNDIIILTPQILVNCLTNG 357
Query: 174 FI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM----KVPRIFGMTASPVVGK 228
I + + L+IFDECH+ HPY IM ++ + +P++ G+TAS VG
Sbjct: 358 TIPSLSVFTLMIFDECHNTS--KQHPYNVIMFNYLDRKLGGSSDSLPQVIGLTASVGVGD 415
Query: 229 GASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSP 267
A +A + I L LD V + ++ E+LE V P
Sbjct: 416 -AKNKAEATEYICKLCASLDTSVIATVRDNLEELEEVVYKP 455
Score = 148 (57.2 bits), Expect = 9.1e-26, Sum P(2) = 9.1e-26
Identities = 59/180 (32%), Positives = 90/180 (50%)
Query: 408 KLLRLIGILST-FRLQQHMKCIVFVNRIVTARALS-YILQNLKFLASWRCHFLVG---VN 462
KL L IL + L + I+FV AL +I +N K L+ + L G N
Sbjct: 614 KLRDLCFILQEEYHLNPETRTILFVKTRALVDALKKWIKENPK-LSFLKPSILTGRGKTN 672
Query: 463 AGLKSMSRNAMKSILEKFRSGELN-LLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQS 521
+ M+ A K +L+ FR+ + N +L+ T V +EG+DI C LVI ++ V IQ+
Sbjct: 673 QNI-GMTLPAQKCVLDTFRTDKDNKILITTSVADEGIDIAQCNLVILYEYVGNVIKMIQT 731
Query: 522 RGRARMPQSEYAFLVDSGNQRELDLIK-NFSKEEDRMNREIMDRTSSDAFTCSEERIYKV 580
RGR R S+ FL+ + N +D K N KEE MN I+ + D +E+I+++
Sbjct: 732 RGRGRARGSK-CFLL-TANADLIDKEKMNMYKEE-MMNGAILILQTWDE-AVFKEKIHQI 787
>UNIPROTKB|Q9GLV6 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9823 "Sus scrofa" [GO:0032587 "ruffle membrane"
evidence=ISS] [GO:0015629 "actin cytoskeleton" evidence=ISS]
[GO:0005923 "tight junction" evidence=ISS] [GO:0003727
"single-stranded RNA binding" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] [GO:0030334 "regulation
of cell migration" evidence=ISS] [GO:0039529 "RIG-I signaling
pathway" evidence=ISS] [GO:0045087 "innate immune response"
evidence=ISS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=ISS] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=ISS] [GO:0002230 "positive
regulation of defense response to virus by host" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR021673
Pfam:PF00270 Pfam:PF00271 Pfam:PF11648 PROSITE:PS50209
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0015629 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 GO:GO:0002230 GO:GO:0030334 GO:GO:0005923
GO:GO:0032587 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0032727 GO:GO:0032728
HOVERGEN:HBG052325 GO:GO:0039529 EMBL:AF181119 UniGene:Ssc.15885
ProteinModelPortal:Q9GLV6 SMR:Q9GLV6 Uniprot:Q9GLV6
Length = 940
Score = 236 (88.1 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 74/221 (33%), Positives = 114/221 (51%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ--KSICIFLAPTVA 116
RKYQLEL A +N I+ TGCGKT ++ LLI E HL + P+ K +F A +
Sbjct: 242 RKYQLELALPAQNGKNTIICAPTGCGKTFVS-LLICE-HHLKKFPRGRKGKVVFFAIQLP 299
Query: 117 LVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
+ +QQ V E +G+KV G + + C E+ ++ +++++ PQIL+ CL +
Sbjct: 300 VYEQQKSVFSKHFERLGYKVAGISGATS--DTVCV-EQIVENSDIIILTPQILVNCLTNG 356
Query: 174 FI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM----KVPRIFGMTASPVVGK 228
I + + L+IFDECH+ HPY IM + + +P++ G+TAS VG
Sbjct: 357 TIPSLSVFTLMIFDECHNTS--KQHPYNVIMFSYLDRKLGGSSDSLPQVIGLTASVGVGD 414
Query: 229 GASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSP 267
A +A + I L LD V + ++ E+LE V P
Sbjct: 415 -AKNKAEATEYICKLCASLDTSVIATVRDNLEELEEVVYKP 454
Score = 148 (57.2 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 59/180 (32%), Positives = 90/180 (50%)
Query: 408 KLLRLIGILST-FRLQQHMKCIVFVNRIVTARALS-YILQNLKFLASWRCHFLVG---VN 462
KL L IL + L + I+FV AL +I +N K L+ + L G N
Sbjct: 613 KLRDLCFILQEEYHLNPETRTILFVKTRALVDALKKWIKENPK-LSFLKPSILTGRGKTN 671
Query: 463 AGLKSMSRNAMKSILEKFRSGELN-LLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQS 521
+ M+ A K +L+ FR+ + N +L+ T V +EG+DI C LVI ++ V IQ+
Sbjct: 672 QNI-GMTLPAQKCVLDTFRTDKDNKILITTSVADEGIDIAQCNLVILYEYVGNVIKMIQT 730
Query: 522 RGRARMPQSEYAFLVDSGNQRELDLIK-NFSKEEDRMNREIMDRTSSDAFTCSEERIYKV 580
RGR R S+ FL+ + N +D K N KEE MN I+ + D +E+I+++
Sbjct: 731 RGRGRARGSK-CFLL-TANADLIDKEKMNMYKEE-MMNGAILILQTWDE-AVFKEKIHQI 786
>UNIPROTKB|E2RMV6 [details] [associations]
symbol:DDX58 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00510000046789 OMA:KCKAFAC EMBL:AAEX03007933
Ensembl:ENSCAFT00000002841 Uniprot:E2RMV6
Length = 929
Score = 246 (91.7 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 85/287 (29%), Positives = 143/287 (49%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ--KSICIFLAPTVA 116
R YQLEL A E +N I+ TGCGKT +A LLI E HL + PQ K +F A +
Sbjct: 243 RNYQLELALPAKEGKNTIICAPTGCGKTFVA-LLICE-HHLKKFPQGQKGKIVFFAIQIP 300
Query: 117 LVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
+ +QQ V E +G+KV G + + E+ ++ +++V+ PQIL+ CL +
Sbjct: 301 VYEQQNSVFSKYFERLGYKVAGISGATSE---NISVEQIVENNDIIVLTPQILVNCLRNG 357
Query: 174 FI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM----KVPRIFGMTASPVVGK 228
I + + L+IFDECH+ +HPY IM ++ + +P++ G+TAS +G
Sbjct: 358 TIPSLSVFTLMIFDECHNTS--KHHPYNMIMFNYLDQKLGGSSDPLPQVVGLTASVGIGD 415
Query: 229 GASAQANLPKSINSLENLLDAKVYS-VED-AEDLESFVSSPVVRVYQYGPVINDTSSSYV 286
+ + + I L LD V + V+D E+LE V P ++ + ++
Sbjct: 416 AKNTMEAM-EYICKLCASLDTSVIATVKDNLEELEEIVYKP----QKFFRKVESRTTDRF 470
Query: 287 TCSEQLAEIKREQYISALSRKLHDHQ---SLRNTTKQLNRLHDSMKF 330
C ++++ RE +L++ + D +L N ++ NR + K+
Sbjct: 471 KCI--ISQLMRET--ESLAKNIFDELGTITLENVSQIQNRNFGTQKY 513
Score = 131 (51.2 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 54/164 (32%), Positives = 77/164 (46%)
Query: 408 KLLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVG---VNA 463
KL L IL + L + I+FV AL ++ L+ + L G N
Sbjct: 614 KLKDLSFILQEEYHLNPESRTILFVKTRALVDALKKWIEENSELSFLKPGILTGRGKTNH 673
Query: 464 GLKSMSRNAMKSILEKFRS-GELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSR 522
M+ A K L+ FR+ G+ +L+AT V +EG+DI C LVI ++ V IQ+R
Sbjct: 674 NT-GMTLPAQKCALDAFRTDGDKKILIATSVADEGIDIAQCNLVILYEYVGNVIRMIQTR 732
Query: 523 GRARMPQSEYAFLVDSGNQRELDLIK----NFSKEEDRMNREIM 562
GR R S+ FL+ S D+IK N KE+ MN I+
Sbjct: 733 GRGRARGSK-CFLLTSN----ADVIKKEKLNIYKEKI-MNDSIL 770
>MGI|MGI:1918836 [details] [associations]
symbol:Ifih1 "interferon induced with helicase C domain 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016925 "protein
sumoylation" evidence=ISO] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=ISO] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0042981
"regulation of apoptotic process" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=ISO] [GO:0045087
"innate immune response" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR001315 InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619
Pfam:PF04851 Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194
SMART:SM00490 MGI:MGI:1918836 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0042981 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0051607
GO:GO:0009615 GO:GO:0003725 GO:GO:0004386 Gene3D:1.10.533.10
InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0043021 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016925 GO:GO:0032727
eggNOG:COG1111 GeneTree:ENSGT00510000046789 GO:GO:0032728
HOVERGEN:HBG106019 CTD:64135 KO:K12647 OMA:KCGQAWG
OrthoDB:EOG48KR9P EMBL:AY075132 EMBL:AF374384 EMBL:AK018602
EMBL:AK037057 EMBL:AK040519 EMBL:AK153018 EMBL:AL929246
EMBL:BC004031 EMBL:BC019605 EMBL:BC025508 EMBL:BC080200
IPI:IPI00172284 IPI:IPI00555048 RefSeq:NP_001157949.1
RefSeq:NP_082111.2 UniGene:Mm.136224 PDB:3TS9 PDBsum:3TS9
ProteinModelPortal:Q8R5F7 SMR:Q8R5F7 STRING:Q8R5F7
PhosphoSite:Q8R5F7 PaxDb:Q8R5F7 PRIDE:Q8R5F7
Ensembl:ENSMUST00000028259 Ensembl:ENSMUST00000112459 GeneID:71586
KEGG:mmu:71586 UCSC:uc012bvy.1 InParanoid:A2AUY7 NextBio:334053
Bgee:Q8R5F7 CleanEx:MM_IFIH1 Genevestigator:Q8R5F7
GermOnline:ENSMUSG00000026896 Uniprot:Q8R5F7
Length = 1025
Score = 242 (90.2 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 56/155 (36%), Positives = 95/155 (61%)
Query: 406 SKKLLRLIG-ILSTF-RLQQHMKCIVFVNRIVTARALS-YILQNLKFL-ASWRCHFLVGV 461
++KL++L IL F R ++ + I+F + ALS +I++N KF + H L+G
Sbjct: 698 NEKLIKLRNTILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGA 757
Query: 462 --NAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFI 519
++ +K M++ K ++ KFR+GE+NLL+AT V EEGLDI+ C +VIR+ L + +
Sbjct: 758 GHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMV 817
Query: 520 QSRGRARMPQSEYAFLVDSGNQ-RELDLIKNFSKE 553
Q+RGRAR +S Y + SG+ E +++ +F ++
Sbjct: 818 QARGRARADESTYVLVTSSGSGVTEREIVNDFREK 852
Score = 143 (55.4 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 51/178 (28%), Positives = 86/178 (48%)
Query: 43 ESSVGAQKTDKDPKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIR 101
ES + ++ +P+ R YQ+E+ + A++ +NII+ L TG GKT +AV + + HL +
Sbjct: 293 ESVIQTKRVSPEPELQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKD--HLDK 350
Query: 102 KPQKSIC---IFLAPTVALVQQQ-AKVIEESIGFKVRTF-CGGSKRLKSHCDWEKEIDQY 156
K Q S I L V L +Q K + R G +LK + + + Y
Sbjct: 351 KKQASESGKVIVLVNKVMLAEQLFRKEFNPYLKKWYRIIGLSGDTQLK--ISFPEVVKSY 408
Query: 157 EVLVMIPQILLYCLYHRF------IKMELIALLIFDECHHAQVKSNHPYAKIMKDFYK 208
+V++ QIL L + +++ +L+I DECHH ++ Y IM+ + K
Sbjct: 409 DVIISTAQILENSLLNLESGDDDGVQLSDFSLIIIDECHHTNKEA--VYNNIMRRYLK 464
Score = 96 (38.9 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 42/149 (28%), Positives = 71/149 (47%)
Query: 139 GSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF------IKMELIALLIFDECHHAQ 192
G +LK + + + Y+V++ QIL L + +++ +L+I DECHH
Sbjct: 393 GDTQLK--ISFPEVVKSYDVIISTAQILENSLLNLESGDDDGVQLSDFSLIIIDECHHTN 450
Query: 193 VKSNHPYAKIMKDFYKP-----DIMK-------VPRIFGMTASPVVGKGASAQANLPKSI 240
++ Y IM+ + K D+ K +P+I G+TASP VG A Q+ K I
Sbjct: 451 KEA--VYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQILGLTASPGVG-AAKKQSEAEKHI 507
Query: 241 NSLENLLDA-KVYSV-EDAEDLESFVSSP 267
++ LDA + +V E+ L+ + P
Sbjct: 508 LNICANLDAFTIKTVKENLGQLKHQIKEP 536
Score = 41 (19.5 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 1138 NAEVRCSKGHHW----LHKKTIADVVEA--LVGAFIDDSGFKAATAFLKWIGIQVEFEAS 1191
N E+ C G W +HK ++ V F ++S K + KW+ + + F
Sbjct: 957 NGEIICKCGQAWGTMMVHKGLDLPCLKIRNFVVNFKNNSPKKQ---YKKWVELPIRFPDL 1013
Query: 1192 QVTNICISS 1200
+ C+ S
Sbjct: 1014 DYSEYCLYS 1022
>UNIPROTKB|E2RNK0 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045087 "innate immune response"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0016925 "protein sumoylation" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0042981
"regulation of apoptotic process" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001315 InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619 Pfam:PF04851
Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0042981 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0009615
GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
GO:GO:0043021 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016925 GeneTree:ENSGT00510000046789 CTD:64135 KO:K12647
OMA:KCGQAWG EMBL:AAEX03017717 RefSeq:XP_545493.2
Ensembl:ENSCAFT00000016597 GeneID:488371 KEGG:cfa:488371
Uniprot:E2RNK0
Length = 1029
Score = 231 (86.4 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 55/155 (35%), Positives = 94/155 (60%)
Query: 406 SKKLLRLIG-ILSTF-RLQQHMKCIVFVNRIVTARALS-YILQNLKFL-ASWRCHFLVGV 461
++KL++L I+ F R ++ + I+F +A ALS +I +N KF + H L+G
Sbjct: 701 NEKLIKLRNTIMEQFTRTEEPARGIIFTKTRQSAFALSQWITENKKFAEVGVKAHHLIGA 760
Query: 462 --NAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFI 519
++ K M++N K ++ KFR+G++NLL+AT V EEGLDI+ C +VIR+ L + +
Sbjct: 761 GHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMV 820
Query: 520 QSRGRARMPQSEYAFLVDSGNQR-ELDLIKNFSKE 553
Q+RGRAR +S Y + S + E +++ +F ++
Sbjct: 821 QARGRARADESTYVLVAHSNSGVIEREIVNDFREK 855
Score = 144 (55.7 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 54/180 (30%), Positives = 89/180 (49%)
Query: 43 ESSVGAQKTDKDPKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIR 101
E +V A++ +P+ R YQ+E+ + A+E +NII+ L TG GKT +AV + + HL +
Sbjct: 294 EENV-AERASPEPELHLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKD--HLDK 350
Query: 102 KPQKSI---CIFLAPTVALVQQQAKVIEESIGFKVRTF----CGGSKRLKSHCDWEKEID 154
K + S I L V LV+Q + EE F + + G +LK + + +
Sbjct: 351 KKKASEPGKVIVLVNKVPLVEQLFR--EEFEPFLKKWYHTIGLSGDTQLK--ISFPEIVK 406
Query: 155 QYEVLVMIPQILLYCLYHRF------IKMELIALLIFDECHHAQVKSNHPYAKIMKDFYK 208
Y+V++ QIL L + ++ L+I DECHH ++ Y IM+ + K
Sbjct: 407 TYDVIISTAQILENSLLNSEKGEDDGVQFSDFTLIIIDECHHTNKEA--VYNNIMRRYLK 464
Score = 101 (40.6 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 44/148 (29%), Positives = 70/148 (47%)
Query: 139 GSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF------IKMELIALLIFDECHHAQ 192
G +LK + + + Y+V++ QIL L + ++ L+I DECHH
Sbjct: 393 GDTQLK--ISFPEIVKTYDVIISTAQILENSLLNSEKGEDDGVQFSDFTLIIIDECHHTN 450
Query: 193 ---VKSN--HPYAKI------MKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSIN 241
V +N Y K +K YKP ++ +P+I G+TASP V +GA QA + I
Sbjct: 451 KEAVYNNIMRRYLKQKLKNNKLKKEYKP-VIPLPQILGLTASPGV-RGAKRQAEAQQHIL 508
Query: 242 SLENLLDA-KVYSV-EDAEDLESFVSSP 267
+ LDA + +V E+ L+ + P
Sbjct: 509 KICANLDACTIITVKENINQLKGQMKEP 536
>UNIPROTKB|D4AC08 [details] [associations]
symbol:Ifih1 "Protein Ifih1" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0042981
"regulation of apoptotic process" evidence=IEA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 RGD:1560496 GO:GO:0005524 GO:GO:0042981 GO:GO:0003677
GO:GO:0005622 GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 IPI:IPI00568713
Ensembl:ENSRNOT00000040263 ArrayExpress:D4AC08 Uniprot:D4AC08
Length = 978
Score = 240 (89.5 bits), Expect = 9.8e-24, Sum P(3) = 9.8e-24
Identities = 56/155 (36%), Positives = 95/155 (61%)
Query: 406 SKKLLRLIG-ILSTF-RLQQHMKCIVFVNRIVTARALS-YILQNLKFL-ASWRCHFLVGV 461
++KL++L IL F R ++ + I+F + ALS +I++N KF + H L+G
Sbjct: 651 NEKLIKLRNTILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENEKFAEVGVKAHHLIGA 710
Query: 462 --NAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFI 519
++ +K M++ K ++ KFR+GE+NLL+AT V EEGLDI+ C +VIR+ L + +
Sbjct: 711 GHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMV 770
Query: 520 QSRGRARMPQSEYAFLVDSGNQ-RELDLIKNFSKE 553
Q+RGRAR +S Y + SG+ E +++ +F ++
Sbjct: 771 QARGRARADESTYVLVTSSGSGVTEREIVNDFREK 805
Score = 137 (53.3 bits), Expect = 9.8e-24, Sum P(3) = 9.8e-24
Identities = 47/176 (26%), Positives = 83/176 (47%)
Query: 43 ESSVGAQKTDKDPKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIR 101
++ +G ++ P+ R YQ+E+ + A++ +NII+ L TG GKT +AV + + HL +
Sbjct: 245 DTIMGTKRASPKPELQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKD--HLDK 302
Query: 102 KPQ---KSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEV 158
K Q I L V L +Q + K G S + + + + Y+V
Sbjct: 303 KKQACESGKVIVLVNKVMLAEQLFRKEFNPFLKKWYRIIGLSGDTQLKISFPEVVKSYDV 362
Query: 159 LVMIPQILLYCLYHRF------IKMELIALLIFDECHHAQVKSNHPYAKIMKDFYK 208
++ QIL L + +++ +L+I DECHH ++ Y IM+ + K
Sbjct: 363 IISTAQILENSLLNLESGEDDGVQLSDFSLIIIDECHHTNKEA--VYNNIMRRYLK 416
Score = 95 (38.5 bits), Expect = 2.1e-19, Sum P(3) = 2.1e-19
Identities = 40/147 (27%), Positives = 70/147 (47%)
Query: 139 GSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF------IKMELIALLIFDECHHAQ 192
G +LK + + + Y+V++ QIL L + +++ +L+I DECHH
Sbjct: 345 GDTQLK--ISFPEVVKSYDVIISTAQILENSLLNLESGEDDGVQLSDFSLIIIDECHHTN 402
Query: 193 VKS--NHPYAKIMKDFYKPDIMK--------VPRIFGMTASPVVGKGASAQANLPKSINS 242
++ N+ + +K K +K +P+I G+TASP VG A Q+ K I +
Sbjct: 403 KEAVYNNIMRRYLKQKLKNHKLKKQNKPTIHLPQILGLTASPGVG-AAKKQSEAEKHILN 461
Query: 243 LENLLDA-KVYSV-EDAEDLESFVSSP 267
+ LDA + +V E+ L+ + P
Sbjct: 462 ICANLDAFTIKTVKENLSQLKHQIKEP 488
Score = 43 (20.2 bits), Expect = 9.8e-24, Sum P(3) = 9.8e-24
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 1138 NAEVRCSKGHHW----LHKKTIADVVEA--LVGAFIDDSGFKAATAFLKWIGIQVEFEAS 1191
N E+ C G W +HK ++ V F ++S K + KW+ + + F
Sbjct: 910 NGEIICKCGQAWGTMMVHKGLDLPCLKIRNFVVNFKNNSSKKQ---YKKWVELPIRFPDL 966
Query: 1192 QVTNICISS 1200
+ C+ S
Sbjct: 967 DCSEYCLYS 975
>RGD|1560496 [details] [associations]
symbol:Ifih1 "interferon induced with helicase C domain 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA;ISO]
[GO:0009615 "response to virus" evidence=IEA;ISO] [GO:0016925
"protein sumoylation" evidence=IEA;ISO] [GO:0032727 "positive
regulation of interferon-alpha production" evidence=ISO]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045087 "innate immune response"
evidence=IEA;ISO] InterPro:IPR001315 InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619
Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 RGD:1560496
GO:GO:0005524 GO:GO:0042981 GO:GO:0003677 GO:GO:0005622
GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH473949
GeneTree:ENSGT00510000046789 CTD:64135 KO:K12647 OMA:KCGQAWG
RefSeq:NP_001102669.1 UniGene:Rn.151974 Ensembl:ENSRNOT00000009620
GeneID:499801 KEGG:rno:499801 NextBio:704049 Uniprot:G3V6W5
Length = 1027
Score = 240 (89.5 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 56/155 (36%), Positives = 95/155 (61%)
Query: 406 SKKLLRLIG-ILSTF-RLQQHMKCIVFVNRIVTARALS-YILQNLKFL-ASWRCHFLVGV 461
++KL++L IL F R ++ + I+F + ALS +I++N KF + H L+G
Sbjct: 700 NEKLIKLRNTILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENEKFAEVGVKAHHLIGA 759
Query: 462 --NAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFI 519
++ +K M++ K ++ KFR+GE+NLL+AT V EEGLDI+ C +VIR+ L + +
Sbjct: 760 GHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMV 819
Query: 520 QSRGRARMPQSEYAFLVDSGNQ-RELDLIKNFSKE 553
Q+RGRAR +S Y + SG+ E +++ +F ++
Sbjct: 820 QARGRARADESTYVLVTSSGSGVTEREIVNDFREK 854
Score = 137 (53.3 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 47/176 (26%), Positives = 83/176 (47%)
Query: 43 ESSVGAQKTDKDPKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIR 101
++ +G ++ P+ R YQ+E+ + A++ +NII+ L TG GKT +AV + + HL +
Sbjct: 294 DTIMGTKRASPKPELQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKD--HLDK 351
Query: 102 KPQ---KSICIFLAPTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEV 158
K Q I L V L +Q + K G S + + + + Y+V
Sbjct: 352 KKQACESGKVIVLVNKVMLAEQLFRKEFNPFLKKWYRIIGLSGDTQLKISFPEVVKSYDV 411
Query: 159 LVMIPQILLYCLYHRF------IKMELIALLIFDECHHAQVKSNHPYAKIMKDFYK 208
++ QIL L + +++ +L+I DECHH ++ Y IM+ + K
Sbjct: 412 IISTAQILENSLLNLESGEDDGVQLSDFSLIIIDECHHTNKEA--VYNNIMRRYLK 465
Score = 95 (38.5 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 40/147 (27%), Positives = 70/147 (47%)
Query: 139 GSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF------IKMELIALLIFDECHHAQ 192
G +LK + + + Y+V++ QIL L + +++ +L+I DECHH
Sbjct: 394 GDTQLK--ISFPEVVKSYDVIISTAQILENSLLNLESGEDDGVQLSDFSLIIIDECHHTN 451
Query: 193 VKS--NHPYAKIMKDFYKPDIMK--------VPRIFGMTASPVVGKGASAQANLPKSINS 242
++ N+ + +K K +K +P+I G+TASP VG A Q+ K I +
Sbjct: 452 KEAVYNNIMRRYLKQKLKNHKLKKQNKPTIHLPQILGLTASPGVG-AAKKQSEAEKHILN 510
Query: 243 LENLLDA-KVYSV-EDAEDLESFVSSP 267
+ LDA + +V E+ L+ + P
Sbjct: 511 ICANLDAFTIKTVKENLSQLKHQIKEP 537
Score = 43 (20.2 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 1138 NAEVRCSKGHHW----LHKKTIADVVEA--LVGAFIDDSGFKAATAFLKWIGIQVEFEAS 1191
N E+ C G W +HK ++ V F ++S K + KW+ + + F
Sbjct: 959 NGEIICKCGQAWGTMMVHKGLDLPCLKIRNFVVNFKNNSSKKQ---YKKWVELPIRFPDL 1015
Query: 1192 QVTNICISS 1200
+ C+ S
Sbjct: 1016 DCSEYCLYS 1024
Score = 39 (18.8 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 230 ASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPV 268
A+ + LP +I++L L+ + +++ED SF S V
Sbjct: 219 AANEPLLP-AIDALS--LETEAWTIEDTSPEASFADSSV 254
>UNIPROTKB|A2A376 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0043330 "response to
exogenous dsRNA" evidence=IEA] [GO:0045087 "innate immune response"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00382 SMART:SM00490
GO:GO:0005524 GO:GO:0003727 GO:GO:0045087 GO:GO:0009615
EMBL:AL161783 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
GO:GO:0032728 EMBL:AL353671 HGNC:HGNC:19102 HOGENOM:HOG000230911
HOVERGEN:HBG052325 ChiTaRS:DDX58 IPI:IPI01009182 SMR:A2A376
Ensembl:ENST00000379868 Uniprot:A2A376
Length = 722
Score = 221 (82.9 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 83/284 (29%), Positives = 138/284 (48%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ--KSICIFLAPTVA 116
R YQLEL AM+ +N I+ TGCGKT ++ LLI E HL + PQ K +F A +
Sbjct: 41 RNYQLELALPAMKGKNTIICAPTGCGKTFVS-LLICE-HHLKKFPQGQKGKVVFFANQIP 98
Query: 117 LVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
+ +QQ V E G++V G + + E+ ++ +++++ PQIL+ L
Sbjct: 99 VYEQQKSVFSKYFERHGYRVTGISGATAE---NVPVEQIVENNDIIILTPQILVNNLKKG 155
Query: 174 FI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM----KVPRIFGMTASPVVGK 228
I + + L+IFDECH+ HPY IM ++ + +P++ G+TAS VG
Sbjct: 156 TIPSLSIFTLMIFDECHNTS--KQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 213
Query: 229 GASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSPVVRVYQYGPVINDTSSSYV 286
+ L I L LDA V + + E+LE V P + I+D Y+
Sbjct: 214 AKNTDEALDY-ICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD-KFKYI 271
Query: 287 TCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKF 330
+A++ R+ +L++++ + L N ++ NR + K+
Sbjct: 272 -----IAQLMRDT--ESLAKRIC--KDLENLSQIQNREFGTQKY 306
Score = 143 (55.4 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 52/159 (32%), Positives = 76/159 (47%)
Query: 408 KLLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLK 466
KL L IL + L I+FV AL ++ L+ + L G +
Sbjct: 407 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 466
Query: 467 S--MSRNAMKSILEKFR-SGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRG 523
+ M+ A K IL+ F+ SG+ N+L+AT V +EG+DI C LVI ++ V IQ+RG
Sbjct: 467 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 526
Query: 524 RARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
R R S+ L + E + I N KE+ MN I+
Sbjct: 527 RGRARGSKCFLLTSNAGVIEKEQI-NMYKEK-MMNDSIL 563
>TAIR|locus:504955425 [details] [associations]
symbol:RTL1 "RNAse II-like 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0004525
"ribonuclease III activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] InterPro:IPR000999 Pfam:PF00636 PROSITE:PS50142
SMART:SM00535 EMBL:CP002687 GO:GO:0003723 GO:GO:0006396
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 IPI:IPI00537607
RefSeq:NP_680697.4 UniGene:At.45352 ProteinModelPortal:F4JK37
SMR:F4JK37 PRIDE:F4JK37 EnsemblPlants:AT4G15417.1 GeneID:827212
KEGG:ath:AT4G15417 OMA:HRFLRHK PhylomeDB:F4JK37 Uniprot:F4JK37
Length = 264
Score = 283 (104.7 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 75/232 (32%), Positives = 121/232 (52%)
Query: 1210 LDMATLEILLGHQFLHRGLLLQAFVHPSF-NRLGGCYQRLEFLGDAVLDYLITSYLYSVY 1268
+++ +LE +L ++F + LLL+AF S+ + Y+ LE LGD++L+ I +Y
Sbjct: 27 MEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLY 86
Query: 1269 PKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMIT-PSSTR 1327
PK PG LT LR++ V+ + A VAV+ Y +L +L E I +V+ M P +
Sbjct: 87 PKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKYPLHSN 146
Query: 1328 EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELL 1387
+ + PKVL D+VES++GAI +D + TVWK++ L+PI+ ++ +P+ EL
Sbjct: 147 GLL---KVPKVLADIVESTIGAIFMDCN-STETVWKVIKPLLEPIIHLDKMKSHPMTELN 202
Query: 1388 ELCNSYDLDLQFPSLKKGGK---FLAEAKVTGKDKDVFISACATNLSRKEAI 1436
E+C +L L + + F E K G A N + K AI
Sbjct: 203 EMCQKRNLKLTSKDTWEENQTYCFHIEDKFVGCGHHPVKKETARNFAAKNAI 254
>UNIPROTKB|B3KWW1 [details] [associations]
symbol:DDX58 "cDNA FLJ44001 fis, clone TESTI4022716, highly
similar to Probable ATP-dependent RNA helicase DDX58 (EC 3.6.1.-)"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AL161783 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL353671 UniGene:Hs.190622
HGNC:HGNC:19102 HOVERGEN:HBG052325 ChiTaRS:DDX58 IPI:IPI01009182
EMBL:AK125989 SMR:B3KWW1 STRING:B3KWW1 Ensembl:ENST00000542096
UCSC:uc010mji.3 Uniprot:B3KWW1
Length = 854
Score = 221 (82.9 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 83/284 (29%), Positives = 138/284 (48%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ--KSICIFLAPTVA 116
R YQLEL AM+ +N I+ TGCGKT ++ LLI E HL + PQ K +F A +
Sbjct: 173 RNYQLELALPAMKGKNTIICAPTGCGKTFVS-LLICE-HHLKKFPQGQKGKVVFFANQIP 230
Query: 117 LVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
+ +QQ V E G++V G + + E+ ++ +++++ PQIL+ L
Sbjct: 231 VYEQQKSVFSKYFERHGYRVTGISGATAE---NVPVEQIVENNDIIILTPQILVNNLKKG 287
Query: 174 FI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM----KVPRIFGMTASPVVGK 228
I + + L+IFDECH+ HPY IM ++ + +P++ G+TAS VG
Sbjct: 288 TIPSLSIFTLMIFDECHNTS--KQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 345
Query: 229 GASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSPVVRVYQYGPVINDTSSSYV 286
+ L I L LDA V + + E+LE V P + I+D Y+
Sbjct: 346 AKNTDEALDY-ICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD-KFKYI 403
Query: 287 TCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKF 330
+A++ R+ +L++++ + L N ++ NR + K+
Sbjct: 404 -----IAQLMRDT--ESLAKRIC--KDLENLSQIQNREFGTQKY 438
Score = 143 (55.4 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 52/159 (32%), Positives = 76/159 (47%)
Query: 408 KLLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLK 466
KL L IL + L I+FV AL ++ L+ + L G +
Sbjct: 539 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 598
Query: 467 S--MSRNAMKSILEKFR-SGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRG 523
+ M+ A K IL+ F+ SG+ N+L+AT V +EG+DI C LVI ++ V IQ+RG
Sbjct: 599 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 658
Query: 524 RARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
R R S+ L + E + I N KE+ MN I+
Sbjct: 659 RGRARGSKCFLLTSNAGVIEKEQI-NMYKEK-MMNDSIL 695
>UNIPROTKB|O95786 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0043330 "response
to exogenous dsRNA" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IDA;IMP] [GO:0002230 "positive regulation of
defense response to virus by host" evidence=IMP] [GO:0032727
"positive regulation of interferon-alpha production"
evidence=IDA;IMP] [GO:0045087 "innate immune response"
evidence=IMP;TAS] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0039528 "cytoplasmic
pattern recognition receptor signaling pathway in response to
virus" evidence=TAS] [GO:0003725 "double-stranded RNA binding"
evidence=IMP;IDA;TAS] [GO:0030334 "regulation of cell migration"
evidence=IDA] [GO:0005923 "tight junction" evidence=IDA]
[GO:0032587 "ruffle membrane" evidence=IDA] [GO:0015629 "actin
cytoskeleton" evidence=IDA] [GO:0039529 "RIG-I signaling pathway"
evidence=IMP] [GO:0003727 "single-stranded RNA binding"
evidence=IMP] [GO:0009615 "response to virus" evidence=TAS]
[GO:0034344 "regulation of type III interferon production"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0032480
"negative regulation of type I interferon production" evidence=TAS]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0051091
"positive regulation of sequence-specific DNA binding transcription
factor activity" evidence=IC] [GO:0042993 "positive regulation of
transcription factor import into nucleus" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0009597 "detection of virus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0051091 GO:GO:0046872 GO:GO:0015629
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0045087
GO:GO:0002230 GO:GO:0030334 GO:GO:0005923 EMBL:AL161783
EMBL:CH471071 GO:GO:0003690 Reactome:REACT_107772 GO:GO:0032587
GO:GO:0003725 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0032480
GO:GO:0008026 GO:GO:0042993 GO:GO:0043330 GO:GO:0032727
eggNOG:COG1111 GO:GO:0032728 EMBL:AF038963 EMBL:AL353671
EMBL:BC132786 EMBL:BC136610 EMBL:BX647917 EMBL:AL137608
IPI:IPI00295503 IPI:IPI00654731 PIR:T46312 RefSeq:NP_055129.2
UniGene:Hs.190622 PDB:2LWD PDB:2LWE PDB:2QFB PDB:2QFD PDB:2RMJ
PDB:2YKG PDB:3LRN PDB:3LRR PDB:3NCU PDB:3OG8 PDB:3TMI PDB:4AY2
PDBsum:2LWD PDBsum:2LWE PDBsum:2QFB PDBsum:2QFD PDBsum:2RMJ
PDBsum:2YKG PDBsum:3LRN PDBsum:3LRR PDBsum:3NCU PDBsum:3OG8
PDBsum:3TMI PDBsum:4AY2 ProteinModelPortal:O95786 SMR:O95786
DIP:DIP-35444N IntAct:O95786 MINT:MINT-2799116 STRING:O95786
PhosphoSite:O95786 PaxDb:O95786 PRIDE:O95786
Ensembl:ENST00000379882 Ensembl:ENST00000379883 GeneID:23586
KEGG:hsa:23586 UCSC:uc003zra.3 UCSC:uc010mjk.1 CTD:23586
GeneCards:GC09M032447 HGNC:HGNC:19102 HPA:CAB012643 MIM:609631
neXtProt:NX_O95786 PharmGKB:PA134994272 HOGENOM:HOG000230911
HOVERGEN:HBG052325 InParanoid:O95786 KO:K12646 OMA:KCKAFAC
OrthoDB:EOG4SQWW0 PhylomeDB:O95786 ChiTaRS:DDX58
EvolutionaryTrace:O95786 GenomeRNAi:23586 NextBio:46208
ArrayExpress:O95786 Bgee:O95786 CleanEx:HS_DDX58
Genevestigator:O95786 GermOnline:ENSG00000107201 GO:GO:0009597
GO:GO:0034344 GO:GO:0039529 Uniprot:O95786
Length = 925
Score = 221 (82.9 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 83/284 (29%), Positives = 138/284 (48%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ--KSICIFLAPTVA 116
R YQLEL AM+ +N I+ TGCGKT ++ LLI E HL + PQ K +F A +
Sbjct: 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVS-LLICE-HHLKKFPQGQKGKVVFFANQIP 301
Query: 117 LVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
+ +QQ V E G++V G + + E+ ++ +++++ PQIL+ L
Sbjct: 302 VYEQQKSVFSKYFERHGYRVTGISGATAE---NVPVEQIVENNDIIILTPQILVNNLKKG 358
Query: 174 FI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM----KVPRIFGMTASPVVGK 228
I + + L+IFDECH+ HPY IM ++ + +P++ G+TAS VG
Sbjct: 359 TIPSLSIFTLMIFDECHNTS--KQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
Query: 229 GASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSPVVRVYQYGPVINDTSSSYV 286
+ L I L LDA V + + E+LE V P + I+D Y+
Sbjct: 417 AKNTDEALDY-ICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD-KFKYI 474
Query: 287 TCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKF 330
+A++ R+ +L++++ + L N ++ NR + K+
Sbjct: 475 -----IAQLMRDT--ESLAKRIC--KDLENLSQIQNREFGTQKY 509
Score = 143 (55.4 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 52/159 (32%), Positives = 76/159 (47%)
Query: 408 KLLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLK 466
KL L IL + L I+FV AL ++ L+ + L G +
Sbjct: 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
Query: 467 S--MSRNAMKSILEKFR-SGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRG 523
+ M+ A K IL+ F+ SG+ N+L+AT V +EG+DI C LVI ++ V IQ+RG
Sbjct: 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
Query: 524 RARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
R R S+ L + E + I N KE+ MN I+
Sbjct: 730 RGRARGSKCFLLTSNAGVIEKEQI-NMYKEK-MMNDSIL 766
>UNIPROTKB|F1NDV4 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0016925 "protein sumoylation" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR016024
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 GO:GO:0004386 GO:GO:0043021 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016925
GeneTree:ENSGT00510000046789 OMA:KCGQAWG EMBL:AADN02058700
EMBL:AADN02058701 EMBL:AADN02058702 IPI:IPI00579734
Ensembl:ENSGALT00000018067 Uniprot:F1NDV4
Length = 689
Score = 302 (111.4 bits), Expect = 7.1e-23, P = 7.1e-23
Identities = 108/393 (27%), Positives = 188/393 (47%)
Query: 175 IKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI------------MKVPRIFGMTA 222
+++ +L+I DECHH Q + Y IM+ + K I + P+I G+TA
Sbjct: 117 VRLSDFSLIIIDECHHTQKEG--VYNNIMRRYLKEKIKNRKQAKENKPLIPQPQILGLTA 174
Query: 223 SPVVGKGASAQANLPKSINSLENLLDA-KVYSV-EDAEDLESFVSSPVVRVYQYGPVIND 280
SP VG GA + + + I + LDA ++ +V E A L++ V P + D
Sbjct: 175 SPGVG-GARSNSKAEEHILKICANLDACRIMTVKEHASQLKNQVKEPFKKTVIADDKRRD 233
Query: 281 TSSSYVTCSEQLAEIKR--EQYI-SALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGV 337
+ E + +I++ + Y S + ++ +R + + C E+L
Sbjct: 234 PFRERII--EIMQDIQKYCQLYPKSEFGSQPYEQWVIREERRAAKEEKRKERVCAEHLKK 291
Query: 338 CGALHASYILLSGDETMRNELIEAEG--NTIDDSLCR--FASQASEVFAAICRRDGIASD 393
L ++T+R +++A N L R A + + ++D A
Sbjct: 292 YNDA------LQINDTIR--MVDAYNHLNNFYKELKRRKTAESDDDEEPLVSKQDETAKK 343
Query: 394 LSCIEVLKEPFF-SKKLLRLIG-ILSTFRLQQHMKCIVFVNRIVTARAL-SYILQNLKFL 450
E+ ++P + ++KL++L ++ F + + I+F +A AL +I+ N KF
Sbjct: 344 KQLKELARKPEYDNEKLMKLRNTLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFE 403
Query: 451 -ASWRCHFLVGV--NAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVI 507
+ HFL+G N+ K M++N + +++KFR G +NLL+AT V EEGLDI+ C +VI
Sbjct: 404 EVGIKAHFLIGAGHNSETKPMTQNEQREVIDKFRGGSINLLIATTVAEEGLDIKECNIVI 463
Query: 508 RFDLPETVASFIQSRGRARMPQSEYAFLVDSGN 540
R+ L + +Q+RGRAR +S YA + SG+
Sbjct: 464 RYGLVTNEIAMVQARGRARADESTYALVASSGS 496
Score = 155 (59.6 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 65/217 (29%), Positives = 105/217 (48%)
Query: 66 LCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSI---CIFLAPTVALVQQQ 121
+ K A+ ENII+ L TG GKT +AV + + HL +K + S I L V LV+Q
Sbjct: 1 VAKPALNGENIIICLPTGSGKTRVAVYITKD--HLDKKRKASEQGKVIVLVNKVPLVEQH 58
Query: 122 AKVIEESIGFKVRTF----CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH----- 172
+ +E F R + G LK + + + +Y+V++ QIL L +
Sbjct: 59 LR--KEFNPFLKRWYQVIGLSGDSELK--ISFPEVVKRYDVIICTAQILENSLLNATEED 114
Query: 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDI------------MKVPRIFGM 220
+++ +L+I DECHH Q + Y IM+ + K I + P+I G+
Sbjct: 115 ESVRLSDFSLIIIDECHHTQKEG--VYNNIMRRYLKEKIKNRKQAKENKPLIPQPQILGL 172
Query: 221 TASPVVGKGASAQANLPKSINSLENLLDA-KVYSVED 256
TASP VG GA + + + I + LDA ++ +V++
Sbjct: 173 TASPGVG-GARSNSKAEEHILKICANLDACRIMTVKE 208
>DICTYBASE|DDB_G0280963 [details] [associations]
symbol:rrpC "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR007855 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF05183 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280963 GO:GO:0005524
GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_640790.1
ProteinModelPortal:Q54UI6 STRING:Q54UI6 EnsemblProtists:DDB0216193
GeneID:8622843 KEGG:ddi:DDB_G0280963 InParanoid:Q54UI6 OMA:YELFNDY
Uniprot:Q54UI6
Length = 2285
Score = 326 (119.8 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 135/533 (25%), Positives = 238/533 (44%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKS-ICIFLAPTVALV 118
R+YQ + + + N I+ L TG GKT +++L ++ + K + +FL + L
Sbjct: 21 RQYQEDAFNQCISRNTILVLPTGTGKTLVSILTFLKMFEINEKKNNDKVALFLVNNILLG 80
Query: 119 QQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKME 178
+QQ + I+ +V G ++ +K+ Y+++V PQIL+ + I+++
Sbjct: 81 KQQTETIKNLTDKRVMVLSGDDLSFQT----KKK--NYDIVVATPQILMNLINKNKIRID 134
Query: 179 LIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPK 238
+IFDE H+A N Y KIM D PRI G+TAS +
Sbjct: 135 NFHFIIFDEVHNATGLDN--YCKIMSLVKNLDPPFRPRILGLTASVLKNASNYTTERATN 192
Query: 239 SINSLENLLDAKVYS--VEDAEDLES----------FVSSPVVRVYQYGPVINDTS---- 282
I LE+++ +K+Y +E +D + SP +Y+ P I T
Sbjct: 193 EIKKLEDIMLSKIYCPLIEIFKDQQQQQQQQQQQHHHHQSPNFEIYE--PSIQQTKLTSI 250
Query: 283 --------SSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFC-LE 333
+ Y++ ++K EQ + + + QSL + +L DS ++ +
Sbjct: 251 ISKLIIDKTRYLSKKNGHKDVKLEQIELPILKFI---QSLSSLKPKLTSERDSSEYATIV 307
Query: 334 NLGVCGALHASYILLSGDETMRNELIEAEGN-TIDDSLCRFASQASEVFAAICRRDGIAS 392
NL C +L + + + G + + + N I L + S+ ++ +
Sbjct: 308 NL--CNSL--TTLSIEGPQQCLTSITDGFVNGIIYQQLIDYDSEENQQQQEEEEEEEKED 363
Query: 393 DLSCIEVLKEPFFSKKLLRLIGI-LSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLA 451
+ IE+ F K LL+L+ I + + + CIVFV T + L +L + K ++
Sbjct: 364 EDDGIEMKTNKF--KSLLKLLSIEIKENNINDKINCIVFVETRDTGKKLLNLLISEKEIS 421
Query: 452 SWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDL 511
+ G N G M + + I+++F+ G +LV+T V EEG+DI+ C VI FD
Sbjct: 422 KLNPKLIYGHN-GRNGMKHSEQQQIIQQFKEGVCQVLVSTNVLEEGIDIKECNSVICFDN 480
Query: 512 PETVASFIQSRGRARMPQSEYAFLVDSGNQREL-DLIKNFSKEEDRMNREIMD 563
++ S IQ RGR R S + +++ + L DLIK+ E +NR ++D
Sbjct: 481 LYSLKSLIQRRGRDRTCSS-FTLILEQDQRLRLEDLIKS----EIIINRSLID 528
Score = 41 (19.5 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 1076 NAVNNSNLLKLAARNNLQVY 1095
N +NN N L NN ++Y
Sbjct: 951 NNINNGNELNFQNINNEEIY 970
Score = 41 (19.5 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 16/67 (23%), Positives = 27/67 (40%)
Query: 1407 KFLA-EAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKS 1465
KFL KV +KD I+ LS++ I ++ + E + ++
Sbjct: 693 KFLLLNIKVDSTEKDTLINKFTIYLSKRFGYWINYSHYIDAIELDNEQEINNTFELVKET 752
Query: 1466 SPKSEAR 1472
S SEA+
Sbjct: 753 SRPSEAK 759
>UNIPROTKB|F1MKU1 [details] [associations]
symbol:DDX58 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0042993 "positive regulation of transcription
factor import into nucleus" evidence=IEA] [GO:0042802 "identical
protein binding" evidence=IEA] [GO:0039529 "RIG-I signaling
pathway" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0032727 "positive
regulation of interferon-alpha production" evidence=IEA]
[GO:0032587 "ruffle membrane" evidence=IEA] [GO:0030334 "regulation
of cell migration" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0009597 "detection of virus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005923 "tight
junction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0002230 "positive
regulation of defense response to virus by host" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0015629 GO:GO:0008270 GO:GO:0003727 GO:GO:0045944
GO:GO:0045087 GO:GO:0002230 GO:GO:0030334 GO:GO:0005923
GO:GO:0003690 GO:GO:0032587 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0042993
GO:GO:0043330 GO:GO:0032727 GeneTree:ENSGT00510000046789
GO:GO:0032728 OMA:KCKAFAC GO:GO:0009597 GO:GO:0039529
EMBL:DAAA02021991 IPI:IPI00716102 Ensembl:ENSBTAT00000061377
Uniprot:F1MKU1
Length = 942
Score = 223 (83.6 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 77/221 (34%), Positives = 110/221 (49%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ--KSICIFLAPTVA 116
R YQLEL A + +N I+ TGCGKT ++ LLI E HL + PQ K + A V
Sbjct: 242 RNYQLELALPAQKGKNTIICAPTGCGKTFVS-LLICE-HHLKKFPQGRKGKVVVFAVQVP 299
Query: 117 LVQQQAKVIEE---SIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
L +QQ V E G+KV G S + E+ ++ +++++ PQIL+ L
Sbjct: 300 LYEQQKSVFSEYFERFGYKVS---GISGETADNISVEQIVENNDIIILTPQILVNSLKDG 356
Query: 174 FI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM----KVPRIFGMTASPVVGK 228
I + + L+IFDECH+ +HPY IM + + +P++ G+TAS VG
Sbjct: 357 TIPSLSIFTLMIFDECHNTN--KHHPYNMIMFHYLDQKLGGSSDSLPQVIGLTASVGVGD 414
Query: 229 GASAQANLPKSINSLENLLD-AKVYSVED-AEDLESFVSSP 267
A A + I L LD A V +V D E+LE V P
Sbjct: 415 -AKNTAEATEYICKLCASLDTAVVTTVRDNLEELEEVVYKP 454
Score = 136 (52.9 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 50/159 (31%), Positives = 78/159 (49%)
Query: 408 KLLRLIGILST-FRLQQHMKCIVFVNRIVTARAL-SYILQNLKFLASWRCHFLVGVNAGL 465
KL L IL + L + I+FV +AL ++I +N K L+ + L G
Sbjct: 613 KLKDLCFILQEEYHLNPETRTILFVKTRALFQALKNWIEENPK-LSFLKPGILTGRGRTN 671
Query: 466 KSMSRN--AMKSILEKFRSG-ELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSR 522
++M A K L+ FR+ + +L+AT V +EG+DI C LVI ++ V IQ+R
Sbjct: 672 QTMGMTLPAQKCALDAFRTNRDSKILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 731
Query: 523 GRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREI 561
GR R S+ L + + E + + N +E+ MN I
Sbjct: 732 GRGRARGSKCFLLTSNADVIEKEKL-NICQEK-MMNESI 768
>UNIPROTKB|Q9BYX4 [details] [associations]
symbol:IFIH1 "Interferon-induced helicase C
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0042981 "regulation of
apoptotic process" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0019048
"virus-host interaction" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016925 "protein
sumoylation" evidence=IDA] [GO:0039528 "cytoplasmic pattern
recognition receptor signaling pathway in response to virus"
evidence=TAS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IMP;TAS] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=IMP;TAS] [GO:0003725
"double-stranded RNA binding" evidence=IDA;TAS] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0034344 "regulation
of type III interferon production" evidence=TAS] [GO:0009615
"response to virus" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0032480 "negative regulation of type I interferon production"
evidence=TAS] [GO:0009597 "detection of virus" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS50209
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 Reactome:REACT_6900 GO:GO:0019048 GO:GO:0042981
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 Reactome:REACT_107772 GO:GO:0003725 GO:GO:0004386
Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0043021
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0032480
GO:GO:0016925 GO:GO:0032727 eggNOG:COG1111 GO:GO:0032728
GO:GO:0009597 GO:GO:0034344 HOGENOM:HOG000230992 HOVERGEN:HBG106019
EMBL:AF095844 EMBL:AY017378 EMBL:BC046208 EMBL:BC078180
EMBL:BC111750 EMBL:AK056293 IPI:IPI00005577 IPI:IPI00556546
RefSeq:NP_071451.2 UniGene:Hs.163173 PDB:2RQB PDB:3B6E PDB:3GA3
PDB:4GL2 PDBsum:2RQB PDBsum:3B6E PDBsum:3GA3 PDBsum:4GL2
ProteinModelPortal:Q9BYX4 SMR:Q9BYX4 DIP:DIP-42607N IntAct:Q9BYX4
MINT:MINT-3381993 STRING:Q9BYX4 PhosphoSite:Q9BYX4 DMDM:134047802
PaxDb:Q9BYX4 PRIDE:Q9BYX4 Ensembl:ENST00000263642
Ensembl:ENST00000421365 Ensembl:ENST00000543192 GeneID:64135
KEGG:hsa:64135 UCSC:uc002uce.3 UCSC:uc002ucf.3 CTD:64135
GeneCards:GC02M163123 HGNC:HGNC:18873 HPA:HPA002656 MIM:606951
MIM:610155 neXtProt:NX_Q9BYX4 PharmGKB:PA134889215
InParanoid:Q9BYX4 KO:K12647 OMA:KCGQAWG OrthoDB:EOG48KR9P
PhylomeDB:Q9BYX4 ChiTaRS:IFIH1 EvolutionaryTrace:Q9BYX4
GenomeRNAi:64135 NextBio:66034 ArrayExpress:Q9BYX4 Bgee:Q9BYX4
CleanEx:HS_IFIH1 Genevestigator:Q9BYX4 GermOnline:ENSG00000115267
GO:GO:0039528 Uniprot:Q9BYX4
Length = 1025
Score = 228 (85.3 bits), Expect = 4.7e-22, Sum P(3) = 4.7e-22
Identities = 53/141 (37%), Positives = 86/141 (60%)
Query: 406 SKKLLRLIG-ILSTF-RLQQHMKCIVFVNRIVTARALS-YILQNLKFL-ASWRCHFLVGV 461
++KL +L I+ + R ++ + I+F +A ALS +I +N KF + H L+G
Sbjct: 698 NEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGA 757
Query: 462 --NAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFI 519
++ K M++N K ++ KFR+G++NLL+AT V EEGLDI+ C +VIR+ L + +
Sbjct: 758 GHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMV 817
Query: 520 QSRGRARMPQSEYAFLVDSGN 540
Q+RGRAR +S Y + SG+
Sbjct: 818 QARGRARADESTYVLVAHSGS 838
Score = 133 (51.9 bits), Expect = 4.7e-22, Sum P(3) = 4.7e-22
Identities = 50/176 (28%), Positives = 86/176 (48%)
Query: 43 ESSVGAQKTDKDPKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIR 101
E +V A + +P+ R YQ+E+ + A+E +NII+ L TG GKT +AV + + HL +
Sbjct: 293 EENVAA-RASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKD--HLDK 349
Query: 102 KPQKSI---CIFLAPTVALVQQQ-AKVIEESIGFKVRTF-CGGSKRLKSHCDWEKEIDQY 156
K + S I L V LV+Q K + + R G +LK + + +
Sbjct: 350 KKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLK--ISFPEVVKSC 407
Query: 157 EVLVMIPQILLYCLYH------RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDF 206
++++ QIL L + +++ +L+I DECHH ++ Y IM+ +
Sbjct: 408 DIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA--VYNNIMRHY 461
Score = 99 (39.9 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 34/108 (31%), Positives = 57/108 (52%)
Query: 175 IKMELIALLIFDECHHAQVKSNHPYAKIMKDFY-------------KPDIMKVPRIFGMT 221
+++ +L+I DECHH ++ Y IM+ + KP ++ +P+I G+T
Sbjct: 432 VQLSDFSLIIIDECHHTNKEA--VYNNIMRHYLMQKLKNNRLKKENKP-VIPLPQILGLT 488
Query: 222 ASPVVGKGASAQANLPKSINSLENLLDA-KVYSV-EDAEDLESFVSSP 267
ASP VG GA+ QA + I L LDA + +V E+ + L++ + P
Sbjct: 489 ASPGVG-GATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEP 535
Score = 44 (20.5 bits), Expect = 4.7e-22, Sum P(3) = 4.7e-22
Identities = 16/70 (22%), Positives = 29/70 (41%)
Query: 1137 LNAEVRCSKGHHW----LHKKTIADVVEA--LVGAFIDDSGFKAATAFLKWIGIQVEFEA 1190
+N E+ C G W +HK ++ V F ++S K + KW+ + + F
Sbjct: 956 INGEIICKCGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQ---YKKWVELPITFPN 1012
Query: 1191 SQVTNICISS 1200
+ C+ S
Sbjct: 1013 LDYSECCLFS 1022
>DICTYBASE|DDB_G0289659 [details] [associations]
symbol:rrpA "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0289659
GO:GO:0005524 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000148 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_636093.1
ProteinModelPortal:Q54H25 EnsemblProtists:DDB0191515 GeneID:8627305
KEGG:ddi:DDB_G0289659 InParanoid:Q54H25 Uniprot:Q54H25
Length = 2417
Score = 327 (120.2 bits), Expect = 7.7e-22, Sum P(3) = 7.7e-22
Identities = 143/522 (27%), Positives = 237/522 (45%)
Query: 58 IARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ-----KSICIFLA 112
I R YQ+E ++ ++N ++ L TG GKT ++++ + E+ + + K I +FL
Sbjct: 283 IPRDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIALFLV 342
Query: 113 PTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH 172
V LV QQA IE KV G ++ + +Y+VLV L+ L
Sbjct: 343 DRVPLVTQQAGAIEAITNLKVCKLYGEINDSRTRAFVRSK--EYDVLVSTVGSLVNLLEV 400
Query: 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASA 232
R + + + FDE HHA H + K++ K D+ PRI G+TAS +V G S
Sbjct: 401 RHLNILDFYFITFDEVHHAT--GEHDFNKVVDYIRKTDLNYRPRILGLTAS-LVSIGNST 457
Query: 233 QANLPKSINSLENLLDAKVYSVED--AEDLESFVSSPVVRVYQYGPV-INDTSSSYVTCS 289
+ +SI +E + ++V+ +S + +V G + +TS C
Sbjct: 458 IDIVQRSIKDMEERMLSRVFKPTSLLTNSTQSELQPELVSFKTSGQESLIETS----ICE 513
Query: 290 EQLAEIKREQ-YISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGV--CGALHASYI 346
++ K Q +++ L + + K L RL D LE++ + L Y
Sbjct: 514 FLVSNSKELQIFLNYSDVDLDGVRGNPSFLKALERL-DKYSKQLESIYIEYTKVLIELYA 572
Query: 347 LLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICR-RDGIASDLSCIEVLKEPFF 405
LLS T + + T D L + +Q +E++ + R I+ E E
Sbjct: 573 LLSVLSTEGPKQVL----TRLDLLMQSTNQENELYNKLLELRYYISGQYEDRESNFEKGS 628
Query: 406 SK--KLLR----LIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLV 459
++ KL+ I S LQ+ ++ +VFV A L+ +L+ F LV
Sbjct: 629 TRYRKLISSLEYAISDASDGELQKDLRILVFVETRFGASNLTSMLKKEPFQEYLHTKRLV 688
Query: 460 GVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFI 519
G N G+ M +SI+ KFR G+ L+V T V EEG+D+Q C +VI +D ++ S I
Sbjct: 689 GHN-GVDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEGIDVQDCNIVICYDGILSLKSLI 747
Query: 520 QSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREI 561
Q RGRAR ++E F++ + ++L ++ S E + +N I
Sbjct: 748 QRRGRARS-KNESKFIIIYNDDKDLKILDILSSE-NLLNNSI 787
Score = 45 (20.9 bits), Expect = 7.7e-22, Sum P(3) = 7.7e-22
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 1249 EFLGDAVLDYLITSYLYSVYPKL--KPGQLTDLRSMLV 1284
EF+GD + ++L Y Y+ L K G+ T +R + +
Sbjct: 1162 EFIGDCLKNFLPDPY-YAKKKDLSTKSGEFTMIRDVFI 1198
Score = 42 (19.8 bits), Expect = 7.7e-22, Sum P(3) = 7.7e-22
Identities = 5/33 (15%), Positives = 20/33 (60%)
Query: 876 DVENSLVYATHKKWFYLVTNIVFEKNGYSPYKD 908
++ N L + ++ +++T+++ ++ + YK+
Sbjct: 1130 EINNLLAFGKQEEAEFIITSLISKRTKFINYKE 1162
>UNIPROTKB|E2QXT4 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00510000046789 OMA:ELRPYQW EMBL:AAEX03006454
Ensembl:ENSCAFT00000024900 Uniprot:E2QXT4
Length = 680
Score = 286 (105.7 bits), Expect = 3.7e-21, P = 3.7e-21
Identities = 132/507 (26%), Positives = 223/507 (43%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
R YQ E+ A+E +NIIV+L TG GKT A + HL Q + + L V LV
Sbjct: 6 RPYQWEVIMPALEGKNIIVWLPTGAGKTRAAAYVAKR--HLETVDQAKVVV-LVNRVHLV 62
Query: 119 QQQAKVIEESIG--FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY----H 172
Q + +G + + T G + + +++++ ++L L
Sbjct: 63 TQHCEEFSRMLGKRWAIITLSGD---MGPRAGFGHLARSHDLIICTAELLQMALTSPEEE 119
Query: 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK---VPRIFGMTASPVVGKG 229
+++ +LL+ DECHH + Y I+ + + + + +P++ G+TASP G
Sbjct: 120 EHVELNAFSLLVVDECHHTH--KDTVYNLILSRYLEHKLQRTRPLPQVLGLTASPGTGGA 177
Query: 230 ASAQANLPKSINSLENLLDAKVYSVEDAE-DLESFVSSPVVRVYQYGPVINDTSSSYVTC 288
++ + + NL + S E+ L+ + P QY + +
Sbjct: 178 STLDGAIDHILQLCANLDTWHIMSPENHRPQLQEHSAQPCK---QYSLCHRRSQDPFGDM 234
Query: 289 SEQLAE-IKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHAS-Y- 345
++L + I + AL+R Q+ +L++ D+ + L+ V ALH Y
Sbjct: 235 LKKLMDRIHNRLEMPALNRDFGT-QTYEQQVVELSQ--DAAQAGLQQRRVY-ALHLRRYN 290
Query: 346 -ILLSGDETMRNELIEAEGNTIDDSLCRFAS--QASEVFAAICRRDGIASDLSCIEVLKE 402
LL D + +++ G+ D QA A+ D ++L+ + +
Sbjct: 291 DALLIHDTVRAVDALKSLGDFYDRERATKTQVLQAERWLLALF--DDYKNELAHLAT-QT 347
Query: 403 PFFSKKLLRLIGIL-STFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW--RCHFLV 459
P + KL L IL F + I+F + +L LQ L + R L+
Sbjct: 348 PE-NPKLEMLEQILREQFGHSDSPRGIIFTQTRQSTHSLLLWLQQQPGLQTVDIRADLLI 406
Query: 460 GV-NAGLKS-MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVAS 517
G N+ + M++ + ++ KFR G LNLLVAT V EEGLDI C +V+R+ L S
Sbjct: 407 GAGNSSQNTHMTQRDQQEVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVVRYGLLSNEIS 466
Query: 518 FIQSRGRARMPQSEYAFLVDSGNQREL 544
+Q+RGRAR +S Y+F+ G+ REL
Sbjct: 467 MVQARGRARAGRSIYSFVATQGS-REL 492
>UNIPROTKB|F5H5W6 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
GO:GO:0005524 GO:GO:0003676 EMBL:AL161783 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL353671
HGNC:HGNC:19102 ChiTaRS:DDX58 IPI:IPI01012440
ProteinModelPortal:F5H5W6 SMR:F5H5W6 Ensembl:ENST00000545044
UCSC:uc011lnr.1 ArrayExpress:F5H5W6 Bgee:F5H5W6 Uniprot:F5H5W6
Length = 536
Score = 221 (82.9 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
Identities = 83/284 (29%), Positives = 138/284 (48%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ--KSICIFLAPTVA 116
R YQLEL AM+ +N I+ TGCGKT ++ LLI E HL + PQ K +F A +
Sbjct: 41 RNYQLELALPAMKGKNTIICAPTGCGKTFVS-LLICE-HHLKKFPQGQKGKVVFFANQIP 98
Query: 117 LVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
+ +QQ V E G++V G + + E+ ++ +++++ PQIL+ L
Sbjct: 99 VYEQQKSVFSKYFERHGYRVTGISGATAE---NVPVEQIVENNDIIILTPQILVNNLKKG 155
Query: 174 FI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM----KVPRIFGMTASPVVGK 228
I + + L+IFDECH+ HPY IM ++ + +P++ G+TAS VG
Sbjct: 156 TIPSLSIFTLMIFDECHNTS--KQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 213
Query: 229 GASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSPVVRVYQYGPVINDTSSSYV 286
+ L I L LDA V + + E+LE V P + I+D Y+
Sbjct: 214 AKNTDEALDY-ICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD-KFKYI 271
Query: 287 TCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKF 330
+A++ R+ +L++++ + L N ++ NR + K+
Sbjct: 272 -----IAQLMRDT--ESLAKRIC--KDLENLSQIQNREFGTQKY 306
Score = 113 (44.8 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
Identities = 39/119 (32%), Positives = 58/119 (48%)
Query: 408 KLLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLK 466
KL L IL + L I+FV AL ++ L+ + L G +
Sbjct: 407 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 466
Query: 467 S--MSRNAMKSILEKFR-SGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSR 522
+ M+ A K IL+ F+ SG+ N+L+AT V +EG+DI C LVI ++ V IQ+R
Sbjct: 467 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 525
>UNIPROTKB|Q96C10 [details] [associations]
symbol:DHX58 "Probable ATP-dependent RNA helicase DHX58"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0039536 "negative regulation of RIG-I signaling
pathway" evidence=IMP;IDA] [GO:0003725 "double-stranded RNA
binding" evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0045088 "regulation of innate immune response"
evidence=IDA] [GO:0039534 "negative regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:0032480 "negative regulation of type I
interferon production" evidence=IDA] [GO:0045824 "negative
regulation of innate immune response" evidence=IDA] [GO:0032481
"positive regulation of type I interferon production" evidence=ISS]
[GO:0009615 "response to virus" evidence=ISS] [GO:1900245 "positive
regulation of MDA-5 signaling pathway" evidence=ISS] [GO:1900246
"positive regulation of RIG-I signaling pathway" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0019048 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0051607
GO:GO:0009615 GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534
GO:GO:0039536 GO:GO:0045824 eggNOG:COG1111 GO:GO:1900245
GO:GO:1900246 EMBL:AK021416 EMBL:BC014949 IPI:IPI00303746
RefSeq:NP_077024.2 UniGene:Hs.55918 PDB:2RQA PDB:2W4R PDB:3EQT
PDBsum:2RQA PDBsum:2W4R PDBsum:3EQT ProteinModelPortal:Q96C10
SMR:Q96C10 IntAct:Q96C10 MINT:MINT-1460040 STRING:Q96C10
PhosphoSite:Q96C10 DMDM:50401123 PaxDb:Q96C10 PRIDE:Q96C10
DNASU:79132 Ensembl:ENST00000251642 Ensembl:ENST00000563880
GeneID:79132 KEGG:hsa:79132 UCSC:uc002hyw.3 CTD:79132
GeneCards:GC17M040255 HGNC:HGNC:29517 HPA:HPA018670 HPA:HPA019570
MIM:608588 neXtProt:NX_Q96C10 PharmGKB:PA162383566
HOGENOM:HOG000230992 HOVERGEN:HBG106019 InParanoid:Q96C10 KO:K12649
OMA:ELRPYQW OrthoDB:EOG44QT15 ChiTaRS:DHX58
EvolutionaryTrace:Q96C10 GenomeRNAi:79132 NextBio:67993
ArrayExpress:Q96C10 Bgee:Q96C10 CleanEx:HS_DHX58
Genevestigator:Q96C10 GermOnline:ENSG00000108771 GO:GO:0032481
Uniprot:Q96C10
Length = 678
Score = 281 (104.0 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 125/511 (24%), Positives = 220/511 (43%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
R YQ E+ A+E +NII++L TG GKT A + HL + + L V LV
Sbjct: 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKR--HLETVDGAKVVV-LVNRVHLV 60
Query: 119 QQQAKVIEESIG--FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY----H 172
Q + + + V T G + + +++L+ ++L L
Sbjct: 61 TQHGEEFRRMLDGRWTVTTLSGD---MGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117
Query: 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK---VPRIFGMTASPVVGKG 229
+++ + +L++ DECHH + Y IM + + + + +P++ G+TASP G G
Sbjct: 118 EHVELTVFSLIVVDECHHTH--KDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG-G 174
Query: 230 ASAQANLPKSINSLENLL-DAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTC 288
AS L +IN + L + + + ++ P ++ + P Y C
Sbjct: 175 AS---KLDGAINHVLQLCANLDTWCIMSPQNC-----CPQLQEHSQQPC-----KQYNLC 221
Query: 289 SEQLAEIKREQYISALSRKLHDHQSLRNTTKQLN-RLHDSMKFCLENLGVCGAL-----H 342
+ ++ + L ++HDH + +++ ++++ L L +
Sbjct: 222 HRR-SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVY 280
Query: 343 ASYILLSGDETMRNELIEAEGN--TIDDSLCRFASQASEVFAAICRRDGIASDLS--CIE 398
A ++ D + ++ + A + D R +++ A R + D
Sbjct: 281 ALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAH 340
Query: 399 VLKEPFFSKKLLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW--RC 455
+ + KL L IL F + I+F +A +L LQ + L + R
Sbjct: 341 LATHGPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRA 400
Query: 456 HFLVGVNAGLKS--MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
L+G +S M++ + +++KF+ G LNLLVAT V EEGLDI C +V+R+ L
Sbjct: 401 QLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLT 460
Query: 514 TVASFIQSRGRARMPQSEYAFLVDSGNQREL 544
S +Q+RGRAR QS YAF+ G+ REL
Sbjct: 461 NEISMVQARGRARADQSVYAFVATEGS-REL 490
>ZFIN|ZDB-GENE-120612-3 [details] [associations]
symbol:dhx58 "DEXH (Asp-Glu-X-His) box polypeptide
58" species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-120612-3 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:79132 KO:K12649 EMBL:JF970230 RefSeq:NP_001244086.1
UniGene:Dr.93597 GeneID:100148871 KEGG:dre:100148871 Uniprot:G3GMG3
Length = 679
Score = 170 (64.9 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 38/98 (38%), Positives = 57/98 (58%)
Query: 458 LVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVAS 517
L G G +M++ KS++ FR G LNLL++T V EEGLDI C LV+R+ L +
Sbjct: 405 LTGAGNGANNMTQTEQKSVISHFRQGYLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIA 464
Query: 518 FIQSRGRARMPQSEYAFLVDSGNQREL--DLIKNFSKE 553
Q+ GRAR S Y+ + D G RE+ +L+ + ++
Sbjct: 465 QQQASGRARASNSVYSVVADVGG-REVRKELVNEYLED 501
Score = 166 (63.5 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 63/220 (28%), Positives = 105/220 (47%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
R YQ E+ + A+ EN I++L TG GKT AV + + HL K + + L V LV
Sbjct: 6 RPYQEEVVQAALRGENSIIWLPTGGGKTRAAVYVAEK--HLETKANAKVAV-LVNKVHLV 62
Query: 119 QQQ-AKVIEESIG--FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH--- 172
Q K + ++++ G S K + + + ++++ QIL L +
Sbjct: 63 DQHYMKEFGHYLRHKYRIKAISGDSSE-KDF--FGRLVRVSDLVICTAQILENALNNMDE 119
Query: 173 -RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK---VPRIFGMTASPVVGK 228
+ +++ LL+ DECHH +S Y KIM + + + K +P+I G+TASP G
Sbjct: 120 DKHVEITDFTLLVIDECHHTNKES--VYNKIMWRYVEKKVRKEGRLPQILGLTASPGTGG 177
Query: 229 GASAQANLPKSINSLENLLDAKVYSVEDAED-LESFVSSP 267
S + + NL D+K+ S ++ L++FV P
Sbjct: 178 NKSLDKAVEHVLQICANL-DSKIVSTKNYTPMLQNFVPKP 216
Score = 44 (20.5 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 117 LVQQQAKVIEESIGFKVRTFCGGSKRLKSHC--DWEK 151
L Q Q++++EE R R +HC DW K
Sbjct: 354 LAQLQSRLLEEFQDTNSRGIIFSKTRRGTHCLNDWVK 390
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 1307 NVLSETINNYVDYMITPSSTREVKEGPRCPKVL 1339
+V+S Y++ +I+ S E + P C V+
Sbjct: 422 SVISHFRQGYLNLLISTSVAEEGLDIPECNLVV 454
>RGD|1310093 [details] [associations]
symbol:Dhx58 "DEXH (Asp-Glu-X-His) box polypeptide 58"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA;ISO] [GO:0003727 "single-stranded RNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA;ISO]
[GO:0009615 "response to virus" evidence=IEA;ISO] [GO:0032480
"negative regulation of type I interferon production"
evidence=IEA;ISO] [GO:0032481 "positive regulation of type I
interferon production" evidence=IEA;ISO] [GO:0039534 "negative
regulation of MDA-5 signaling pathway" evidence=IEA;ISO]
[GO:0039536 "negative regulation of RIG-I signaling pathway"
evidence=IEA;ISO] [GO:0045088 "regulation of innate immune
response" evidence=ISO] [GO:0045824 "negative regulation of innate
immune response" evidence=IEA;ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA;ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=IEA;ISO]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 RGD:1310093 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0032480 GO:GO:0039534 GO:GO:0039536 GO:GO:0045824
GeneTree:ENSGT00510000046789 GO:GO:1900245 GO:GO:1900246 CTD:79132
KO:K12649 OMA:ELRPYQW OrthoDB:EOG44QT15 GO:GO:0032481
IPI:IPI00371058 RefSeq:NP_001092258.1 UniGene:Rn.105654
Ensembl:ENSRNOT00000024718 GeneID:303538 KEGG:rno:303538
UCSC:RGD:1310093 NextBio:651548 Uniprot:D3ZD46
Length = 678
Score = 206 (77.6 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 55/142 (38%), Positives = 80/142 (56%)
Query: 408 KLLRLIGIL-STFRLQQHMKCIVFVNRIVTARALSYILQNLKFL--ASWRCHFLVGV-NA 463
KL L GIL F H + I+F TA +L L+ L + + L+G N
Sbjct: 350 KLEMLEGILLKQFGSPDHTRGIIFTRTRQTASSLLLWLRQQPCLQTVNIKPQMLIGAGNT 409
Query: 464 GLKS-MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSR 522
G + M++ + ++++FR G+LNLLVAT V EEGLDI C +V+R+ L S +Q+R
Sbjct: 410 GQSTHMTQKDQQEVIQEFRDGKLNLLVATSVAEEGLDIAQCNVVVRYGLLTNEISMVQAR 469
Query: 523 GRARMPQSEYAFLVDSGNQREL 544
GRAR QS Y+F+ G+ RE+
Sbjct: 470 GRARAGQSVYSFVATEGS-REI 490
Score = 138 (53.6 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 50/195 (25%), Positives = 86/195 (44%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
R YQ E+ A+E +NII++L TG GKT A + HL + + + L V LV
Sbjct: 4 RPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKR--HLETVDRGKVVV-LVNRVHLV 60
Query: 119 QQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH----RF 174
Q A+ + K T S + S + +++L+ ++L L
Sbjct: 61 NQHAEEFRRMLD-KQWTVTTLSGDMGSRAGFGLLARSHDLLICTAELLHLALKSSEEDEH 119
Query: 175 IKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK---VPRIFGMTASPVVGKGAS 231
+++ +L++ DECHH + Y I+ + + + K +P++ G+TASP G
Sbjct: 120 VELTEFSLIVVDECHHTH--KDTIYNTILSRYLEHKLKKAKPLPQVLGLTASPGTGGATK 177
Query: 232 AQANLPKSINSLENL 246
Q + + NL
Sbjct: 178 LQGAIDHILQLCANL 192
Score = 37 (18.1 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 825 PVIFHKNSVDWK---IIRRCLSSPVFG 848
PV+ +K DWK IIR V+G
Sbjct: 594 PVVINKVFKDWKPGGIIRCSNCGEVWG 620
>DICTYBASE|DDB_G0291249 [details] [associations]
symbol:rrpB "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0291249
GO:GO:0005524 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 KO:K11699
PANTHER:PTHR23079 RefSeq:XP_635263.1 ProteinModelPortal:Q54EH7
EnsemblProtists:DDB0220017 GeneID:8628208 KEGG:ddi:DDB_G0291249
InParanoid:Q54EH7 OMA:NINERTN ProtClustDB:CLSZ2429575
Uniprot:Q54EH7
Length = 2403
Score = 190 (71.9 bits), Expect = 3.3e-20, Sum P(5) = 3.3e-20
Identities = 59/200 (29%), Positives = 97/200 (48%)
Query: 58 IARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ-----KSICIFLA 112
I R YQ+E ++ ++N ++ L TG GKT ++++ + E+ + + K I +FL
Sbjct: 272 IPRDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIALFLV 331
Query: 113 PTVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH 172
V LV QQA IE KV G ++ + +Y+VLV L+ L
Sbjct: 332 DRVPLVTQQAGAIEAITNLKVCKLYGEINDSRTRAFVRSK--EYDVLVSTVGSLVNLLEV 389
Query: 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASA 232
R + + + FDE HHA H + K++ K D+ PRI G+TAS +V G S
Sbjct: 390 RHLNILDFYFITFDEVHHAT--GEHDFNKVVDYIRKTDLNFRPRILGLTAS-LVSIGNST 446
Query: 233 QANLPKSINSLENLLDAKVY 252
+ +SI +E + ++V+
Sbjct: 447 IDIVQRSIKDMEERMLSRVF 466
Score = 184 (69.8 bits), Expect = 3.3e-20, Sum P(5) = 3.3e-20
Identities = 49/141 (34%), Positives = 77/141 (54%)
Query: 421 LQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKF 480
LQ+ ++ +VFV A L+ +L+ F LVG N G M +SI+ KF
Sbjct: 639 LQKDLRILVFVETRSGASNLTSMLKKEPFQEYLHTKRLVGHN-GDDGMDSEKQQSIIRKF 697
Query: 481 RSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGN 540
R G+ L+V T V EEG+D+Q C +VI +D ++ S IQ RGRAR ++E F++ +
Sbjct: 698 RDGKCRLIVTTNVLEEGIDVQDCNIVICYDGILSLKSLIQRRGRARS-KNESKFIIIYND 756
Query: 541 QRELDLIKNFSKEEDRMNREI 561
++L ++ N E+ +N I
Sbjct: 757 DKDLKIL-NILSSENLLNNSI 776
Score = 45 (20.9 bits), Expect = 3.3e-20, Sum P(5) = 3.3e-20
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 1249 EFLGDAVLDYLITSYLYSVYPKL--KPGQLTDLRSMLV 1284
EF+GD + ++L Y Y+ L K G+ T +R + +
Sbjct: 1177 EFIGDCLKNFLPDPY-YAKKKDLSTKSGEFTMIRDVFI 1213
Score = 43 (20.2 bits), Expect = 7.7e-06, Sum P(5) = 7.7e-06
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 225 VVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLE 261
+ G+ ++N K L+ + Y++ DA D E
Sbjct: 602 ISGQYEDRESNFEKGSTRYRKLISSLEYAISDASDGE 638
Score = 42 (19.8 bits), Expect = 3.3e-20, Sum P(5) = 3.3e-20
Identities = 5/33 (15%), Positives = 20/33 (60%)
Query: 876 DVENSLVYATHKKWFYLVTNIVFEKNGYSPYKD 908
++ N L + ++ +++T+++ ++ + YK+
Sbjct: 1145 EINNLLAFGKQEEAEFIITSLISKRTKFINYKE 1177
Score = 42 (19.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 309 HDHQSLRNTTKQLNRLHDSMK 329
+DH +L + LN+L D +K
Sbjct: 1999 NDHMNLAEKNEILNQLKDEIK 2019
Score = 39 (18.8 bits), Expect = 3.3e-20, Sum P(5) = 3.3e-20
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 796 DRSEFNSEFVPLGKDDYCESSSSTFY 821
D S+F ++ +G +Y SS T Y
Sbjct: 940 DLSQFKNKNYSIGSFEYGNMSSPTKY 965
>POMBASE|SPAC20H4.04 [details] [associations]
symbol:fml2 "ATP-dependent 3' to 5' DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=ISO]
[GO:0043138 "3'-5' DNA helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IC]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20H4.04
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG1111 GO:GO:0033567
RefSeq:NP_593624.1 ProteinModelPortal:Q9HE09
EnsemblFungi:SPAC20H4.04.1 GeneID:2542014 KEGG:spo:SPAC20H4.04
OMA:ILIVVER OrthoDB:EOG4HHSCC NextBio:20803094 Uniprot:Q9HE09
Length = 783
Score = 286 (105.7 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
Identities = 129/501 (25%), Positives = 220/501 (43%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQ E C++A+ N+++ L TG GKT IA +++ L + P+ I IFLAPT L+
Sbjct: 112 RNYQKEFCEQALFHNLLLALPTGLGKTFIAAVVM--LNYFRWFPESKI-IFLAPTKPLLL 168
Query: 120 QQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYE---VLVMIPQILLYCLYHRFIK 176
QQ G G + L ++ + +Y V M PQ L L +
Sbjct: 169 QQRVACSNVAGMSP----GATAELNGEVSPDRRLFEYNTKRVFFMTPQTLQNDLKEHLLD 224
Query: 177 MELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANL 236
+ I LIFDE H A NH YA++M+ + + R+ G+TA+P S+ A++
Sbjct: 225 AKSIICLIFDEAHRAT--GNHSYAQVMRAVLRSNSHF--RVLGLTATP-----GSSTASV 275
Query: 237 PKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQY--GPVINDTSSSYVTCSEQLAE 294
K ++ L + + E++ D+ S+V +++ + +N S +
Sbjct: 276 QKVVDCLH--ISKLIVRNEESIDIRSYVFHKKIQLIKVTISSEMNILKSDFANLYRPYFN 333
Query: 295 IKREQYI-----SALSRKLHD-HQSLRN---TTKQLNRLHDS-MKFCLENLGVCGALHAS 344
R++ + L+ K + SLR ++K + S + C L C H +
Sbjct: 334 FLRQKKLIPINCECLNIKAYTLFVSLRKYSFSSKNVQSKEKSKIMSCFTLLISCA--HIT 391
Query: 345 YIL-LSGDETMRNELIE----AEGNTIDDSLCRFASQASEVFAAICRRDGIASDLSCIEV 399
Y+L G +L+E AEG S F S+ FA + + + +
Sbjct: 392 YLLDCHGIIQFYQKLVETKNKAEGKGSGQSFWLFTSKP---FAFYLEH--LHNKIQGLS- 445
Query: 400 LKEPFFSKKLLRLIG--ILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHF 457
L P + LL L+ T Q+ + ++F TA ++ L ++ + R
Sbjct: 446 LNHPKMNH-LLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRPMV--RASL 502
Query: 458 LVG-VNAGLKS-MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETV 515
+G N+ + M++ K +++FR+G +N LVAT +GEEGLDI ++I +D +
Sbjct: 503 FIGQANSAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSP 562
Query: 516 ASFIQSRGRARMPQSEYAFLV 536
IQ GR +S F++
Sbjct: 563 IRTIQRMGRTGRKKSGKVFVL 583
Score = 43 (20.2 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 1363 KIMLSFLDPILKFSNLQLNPIRELLELCNSYD 1394
+++ S + PI KF LQ N L+ NSY+
Sbjct: 621 RLIPSNIQPIFKFQALQNNADATLI--LNSYN 650
Score = 37 (18.1 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 547 IKNFSKEEDRMNREIMDRTSSDAF 570
+ + K E++ R+ M +TS+ F
Sbjct: 757 VTKYLKYEEKFKRKRMKKTSNALF 780
>UNIPROTKB|K7GMB7 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 EMBL:CU856598
Ensembl:ENSSSCT00000033560 Uniprot:K7GMB7
Length = 588
Score = 191 (72.3 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 49/124 (39%), Positives = 70/124 (56%)
Query: 428 IVFVNRIVTARALSYILQNLKFLASW--RCHFLVGVNAGLKS-----MSRNAMKSILEKF 480
I+F +A +L LQ L + R L+G +S M++ + +++KF
Sbjct: 371 IIFTRTRQSAHSLLLWLQQQPSLQTVDIRAQLLIGAGNSSQSTPMTQMTQRDQQEVIQKF 430
Query: 481 RSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGN 540
R+G LNLLVAT V EEGLDI C +V+R+ L S +Q+RGRAR QS Y+F+ G+
Sbjct: 431 RTGALNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISMVQARGRARASQSVYSFVAAQGS 490
Query: 541 QREL 544
REL
Sbjct: 491 -REL 493
Score = 137 (53.3 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
Identities = 48/208 (23%), Positives = 91/208 (43%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
R YQ E+ A+E NII++L TG GKT A + HL + + L V LV
Sbjct: 4 RPYQWEVIMPALEGRNIIIWLPTGAGKTRAAAYVAKR--HLETVDGAKVVV-LVNRVHLV 60
Query: 119 QQQAKVIEESIG--FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY----H 172
Q + + + + T G + + +++L+ ++L L
Sbjct: 61 TQHCEEFSRMLDRRWAITTLSGD---MGPRAGFGHLARSHDLLICTAELLQKALTSEEEE 117
Query: 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK---VPRIFGMTASPVVGKG 229
+++ + +LL+ DECHH + Y I+ + K + +P++ G+TASP G+
Sbjct: 118 EHVELNVFSLLVVDECHHTH--KDTVYNIILSQYLKHKFQRTKPLPQVLGLTASPGTGRA 175
Query: 230 ASAQANLPKSINSLENLLDAKVYSVEDA 257
++ + + NL ++ S +++
Sbjct: 176 STLDGAIDHILQLCANLDTWRIMSPQNS 203
>MGI|MGI:1931560 [details] [associations]
symbol:Dhx58 "DEXH (Asp-Glu-X-His) box polypeptide 58"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO;IDA] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0032480 "negative
regulation of type I interferon production" evidence=ISO;IMP]
[GO:0032481 "positive regulation of type I interferon production"
evidence=IMP] [GO:0039534 "negative regulation of MDA-5 signaling
pathway" evidence=ISO] [GO:0039536 "negative regulation of RIG-I
signaling pathway" evidence=ISO;IMP] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0045088 "regulation of innate immune
response" evidence=ISO] [GO:0045824 "negative regulation of innate
immune response" evidence=ISO;IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:1900245 "positive regulation of MDA-5 signaling pathway"
evidence=IMP] [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IMP] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1931560 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 eggNOG:COG1111 GeneTree:ENSGT00510000046789
GO:GO:1900245 GO:GO:1900246 CTD:79132 HOGENOM:HOG000230992
HOVERGEN:HBG106019 KO:K12649 OMA:ELRPYQW OrthoDB:EOG44QT15
GO:GO:0032481 EMBL:AF316999 EMBL:AF317000 EMBL:AL591469
EMBL:BC029209 IPI:IPI00319899 RefSeq:NP_084426.2 UniGene:Mm.271830
ProteinModelPortal:Q99J87 SMR:Q99J87 STRING:Q99J87
PhosphoSite:Q99J87 PaxDb:Q99J87 PRIDE:Q99J87
Ensembl:ENSMUST00000017974 GeneID:80861 KEGG:mmu:80861
InParanoid:A2A5E9 NextBio:350167 Bgee:Q99J87 CleanEx:MM_DHX58
Genevestigator:Q99J87 GermOnline:ENSMUSG00000017830 Uniprot:Q99J87
Length = 678
Score = 187 (70.9 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
Identities = 49/134 (36%), Positives = 74/134 (55%)
Query: 415 ILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW--RCHFLVGVNAGLKS--MSR 470
+L F H + I+F TA +L L+ L + + L+G +S M++
Sbjct: 358 LLKQFGSPGHTRGIIFTRTRQTASSLLLWLRQQPCLQTVGIKPQMLIGAGNTSQSTHMTQ 417
Query: 471 NAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQS 530
+ ++++FR G L+LLVAT V EEGLDI C +V+R+ L S +Q+RGRAR QS
Sbjct: 418 KDQQEVIQEFRDGILSLLVATSVAEEGLDIAQCNVVVRYGLLTNEISMVQARGRARAGQS 477
Query: 531 EYAFLVDSGNQREL 544
Y+FL G+ RE+
Sbjct: 478 VYSFLATEGS-REM 490
Score = 143 (55.4 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
Identities = 50/197 (25%), Positives = 87/197 (44%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
R YQ E+ A+E +NII++L TG GKT A + HL + + + L V LV
Sbjct: 4 RPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKR--HLETVDRGKVVV-LVNRVHLV 60
Query: 119 QQQAKVIEESIG--FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH---- 172
Q A+ + + V T G + S + +++L+ ++L L
Sbjct: 61 SQHAEEFRRMLDKHWTVTTLSGD---MGSRAGFGLMARSHDLLICTAELLQLALNSSEED 117
Query: 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK---VPRIFGMTASPVVGKG 229
+++ +L++ DECHH + Y I+ + + + K +P++ G+TASP G
Sbjct: 118 EHVELREFSLIVVDECHHTH--KDTVYNTILSRYLEQKLKKAEPLPQVLGLTASPGTGGA 175
Query: 230 ASAQANLPKSINSLENL 246
Q + + NL
Sbjct: 176 TKLQGAIDHILQLCANL 192
Score = 38 (18.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 626 CHIILPANAPIHQIVGTPQSSMEAAKKDACLKAIED 661
CHI+ P N ++ P+ + D C + +D
Sbjct: 195 CHIMSPKNCYSQLLMHNPKPCKQY---DLCQRRAQD 227
>UNIPROTKB|Q5E9G8 [details] [associations]
symbol:LGP2 "Putative uncharacterized protein LGP2"
species:9913 "Bos taurus" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0045824 "negative
regulation of innate immune response" evidence=IEA] [GO:0039536
"negative regulation of RIG-I signaling pathway" evidence=IEA]
[GO:0039534 "negative regulation of MDA-5 signaling pathway"
evidence=IEA] [GO:0032481 "positive regulation of type I interferon
production" evidence=IEA] [GO:0032480 "negative regulation of type
I interferon production" evidence=IEA] [GO:0009615 "response to
virus" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727 "single-stranded
RNA binding" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0051607
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 GeneTree:ENSGT00510000046789 GO:GO:1900245
GO:GO:1900246 CTD:79132 HOVERGEN:HBG106019 KO:K12649 OMA:ELRPYQW
GO:GO:0032481 EMBL:DAAA02049179 EMBL:DAAA02049177 EMBL:DAAA02049178
EMBL:BT020952 IPI:IPI00693785 RefSeq:NP_001015545.1
UniGene:Bt.27564 Ensembl:ENSBTAT00000065738 GeneID:508378
KEGG:bta:508378 NextBio:20868490 Uniprot:Q5E9G8
Length = 680
Score = 274 (101.5 bits), Expect = 7.5e-20, P = 7.5e-20
Identities = 136/514 (26%), Positives = 228/514 (44%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
R YQ E+ A+E +NII++L TG GKT A + HL + + L V LV
Sbjct: 4 RPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVARR--HLETVDGAKVVV-LVNRVHLV 60
Query: 119 QQQAKVIEESIG--FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY----H 172
Q + + + + T G + + ++++L+ ++L L
Sbjct: 61 TQHCEEFSRMLERRWTITTLSGD---MGPRAGFGHVARRHDLLICTAELLQKALASPEEE 117
Query: 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK---VPRIFGMTASPVVGKG 229
+++ +LL+ DECHH + Y I+ + + + + +P++ G+TASP G
Sbjct: 118 EHVELNAFSLLVVDECHHTH--KDTVYNIILSQYLELKLQRTRPLPQVLGLTASPGTGGV 175
Query: 230 ASAQANLPKSINSLENLLDAKVYSVED-AEDLESFVSSPVVRVYQYGPVINDTSSSYVTC 288
++ + + + NL + S +D + L+ P QY T +
Sbjct: 176 STLEGAIDHVLQLCANLDTWCIMSPKDHSPQLQEHSHQPCK---QYDLCHRRTQDPFGDM 232
Query: 289 SEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHAS-Y-- 345
++L + + R+ Q+ +L++ D+ + L V ALH Y
Sbjct: 233 LKKLMDQIHDHLEMPKLRRDFGTQTYEQQVVELSQ--DAAEAGLLEQRVY-ALHLRRYND 289
Query: 346 ILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAA----ICRRDGIASDLSCIEVLK 401
LL D T+R ++A NT+ D R + +++ A + D ++L+ +
Sbjct: 290 ALLIHD-TVR--AVDAL-NTLRDFYNRERTTKTQILHAERWLLALFDDHKNELARLAT-S 344
Query: 402 EPFFSKKLLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW--RCHFL 458
P + KL L IL FR + I+F +A +L LQ L + R L
Sbjct: 345 GPE-NPKLEVLEAILQRQFRSPDSPRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRPQVL 403
Query: 459 VGV-NAGLKS----MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
G N K+ M++ + +++KFR+G LNLLVAT V EEGLDI C +V+R+ L
Sbjct: 404 TGAGNNSQKTQMIQMTQRDQQEVIQKFRTGTLNLLVATSVAEEGLDIPQCNVVVRYGLLT 463
Query: 514 TVASFIQSRGRARMPQSEYAFLVDSGN---QREL 544
S +Q+RGRAR QS Y+F+ G+ QREL
Sbjct: 464 NEISMVQARGRARASQSVYSFVAAQGSRELQREL 497
>UNIPROTKB|F1S0P6 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:1900245 "positive regulation of MDA-5
signaling pathway" evidence=IEA] [GO:0045824 "negative regulation
of innate immune response" evidence=IEA] [GO:0039536 "negative
regulation of RIG-I signaling pathway" evidence=IEA] [GO:0039534
"negative regulation of MDA-5 signaling pathway" evidence=IEA]
[GO:0032481 "positive regulation of type I interferon production"
evidence=IEA] [GO:0032480 "negative regulation of type I interferon
production" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727 "single-stranded
RNA binding" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0051607
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 GeneTree:ENSGT00510000046789 GO:GO:1900245
GO:GO:1900246 OMA:ELRPYQW GO:GO:0032481 EMBL:CU856598
Ensembl:ENSSSCT00000018960 Ensembl:ENSSSCT00000035155
Uniprot:F1S0P6
Length = 681
Score = 191 (72.3 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 49/124 (39%), Positives = 70/124 (56%)
Query: 428 IVFVNRIVTARALSYILQNLKFLASW--RCHFLVGVNAGLKS-----MSRNAMKSILEKF 480
I+F +A +L LQ L + R L+G +S M++ + +++KF
Sbjct: 371 IIFTRTRQSAHSLLLWLQQQPSLQTVDIRAQLLIGAGNSSQSTPMTQMTQRDQQEVIQKF 430
Query: 481 RSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGN 540
R+G LNLLVAT V EEGLDI C +V+R+ L S +Q+RGRAR QS Y+F+ G+
Sbjct: 431 RTGALNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISMVQARGRARASQSVYSFVAAQGS 490
Query: 541 QREL 544
REL
Sbjct: 491 -REL 493
Score = 137 (53.3 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 48/208 (23%), Positives = 91/208 (43%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
R YQ E+ A+E NII++L TG GKT A + HL + + L V LV
Sbjct: 4 RPYQWEVIMPALEGRNIIIWLPTGAGKTRAAAYVAKR--HLETVDGAKVVV-LVNRVHLV 60
Query: 119 QQQAKVIEESIG--FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY----H 172
Q + + + + T G + + +++L+ ++L L
Sbjct: 61 TQHCEEFSRMLDRRWAITTLSGD---MGPRAGFGHLARSHDLLICTAELLQKALTSEEEE 117
Query: 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK---VPRIFGMTASPVVGKG 229
+++ + +LL+ DECHH + Y I+ + K + +P++ G+TASP G+
Sbjct: 118 EHVELNVFSLLVVDECHHTH--KDTVYNIILSQYLKHKFQRTKPLPQVLGLTASPGTGRA 175
Query: 230 ASAQANLPKSINSLENLLDAKVYSVEDA 257
++ + + NL ++ S +++
Sbjct: 176 STLDGAIDHILQLCANLDTWRIMSPQNS 203
>TAIR|locus:2153333 [details] [associations]
symbol:RTL3 "RNAse THREE-like protein 3" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0006396 GO:GO:0003725 GO:GO:0090305
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 EMBL:AB012240 HSSP:O67082
IPI:IPI00541445 RefSeq:NP_199328.1 UniGene:At.55380
ProteinModelPortal:Q9FKF0 SMR:Q9FKF0 PaxDb:Q9FKF0 PRIDE:Q9FKF0
EnsemblPlants:AT5G45150.1 GeneID:834551 KEGG:ath:AT5G45150
TAIR:At5g45150 HOGENOM:HOG000152519 InParanoid:Q9FKF0 OMA:PHVEPED
PhylomeDB:Q9FKF0 ProtClustDB:CLSN2916859 Genevestigator:Q9FKF0
Uniprot:Q9FKF0
Length = 957
Score = 272 (100.8 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 99/396 (25%), Positives = 170/396 (42%)
Query: 1215 LEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPG 1274
+E +L + F+++ LL +A S + RLEF GD++L+ T+Y+ YP LK
Sbjct: 7 VEKILNYSFVNKTLLKEAITQKS-----PLFDRLEFFGDSILEVAFTNYICHTYPNLKVK 61
Query: 1275 QLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPR 1334
+L DLR+ V+N+ FA +AV+ + + FL+ + L + + N+ + + +
Sbjct: 62 ELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDDPVPYGGLVK 121
Query: 1335 CPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYD 1394
PK+L D +ES + +D +++ +W+I S L+PI +L L P L L D
Sbjct: 122 APKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTPDDLLLQPKLPFLTLFRLAD 181
Query: 1395 LDLQFPSLKKGG--KFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGY 1452
+ S G K K+ ++KD + ++ K + I S +LFS
Sbjct: 182 ---KHGSESTSGIRKMTTSTKILLRNKDC-LDVDLEDVKGK-SFEICSTELFSL------ 230
Query: 1453 VPKTKSLESILKSSPKSEARLIGYDETPINVVAAD--DNVFE-----KLKISEPQGGS-- 1503
T S S+ + E + DE NV D +FE KL+I G+
Sbjct: 231 --STVSENSLTDEMSQEEVVI---DEDSPNVEPEDVKGKLFEICYTRKLQIQTGSSGNPL 285
Query: 1504 SCDIGSPSLTTGG----LQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVI 1559
+ ++ + + ++ + R L E+C N W P F +E+G + F V
Sbjct: 286 TYEMTTKQMVVDKDSLHVEPVNGRGELIEICTKNKWPRPIFSVQEEKGPKNEPKFVCSVK 345
Query: 1560 VEIEAPEKIIECIGEPQXXXXXXXXXXXXXMLWCLE 1595
+EI E G+ + M+ LE
Sbjct: 346 IEIPNIEGTFHMKGDIKSKKKQAENSLAYHMIRALE 381
Score = 193 (73.0 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 64/250 (25%), Positives = 116/250 (46%)
Query: 1204 LPLSASLDMAT--LEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLIT 1261
L S+ +D + +E +L + F+++ LL + H + +Q L F+G++ L T
Sbjct: 405 LLFSSEMDSSVEAVEKILNYSFVNKTLLKELLTHNN----SPLFQGLMFVGESALSLAFT 460
Query: 1262 SYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMI 1321
+LY YP L+P L+ LR + +A VAV + Y+ I + ++++ M
Sbjct: 461 KHLYLTYPMLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIELMG 520
Query: 1322 TPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLN 1381
V + PK+L +L+ GA+ +D +N+ + +I L+PI +L++
Sbjct: 521 KEDDPYRVV---KAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRMQ 577
Query: 1382 ---PIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFI-SACATNLSRKEAIR 1437
P L L + + + F K GG A+V D D+FI S CA + + +
Sbjct: 578 LKQPFLMLFRLADKHGKQIDFRYSKDGGSRKNIAQVY-MD-DMFIASGCAKRIDTAKLL- 634
Query: 1438 IASQQLFSKL 1447
A+++ KL
Sbjct: 635 -AAEEAIQKL 643
Score = 71 (30.1 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 1026 KALTTEKCQERFSL-ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLL 1084
K L E ++ L +RLE GD+ L+ A ++ + + EL R+ V+N
Sbjct: 18 KTLLKEAITQKSPLFDRLEFFGDSILEVAFTNYICHTYPNLKVKELRDLRTANVSNEKFA 77
Query: 1085 KLAARNNLQVYI 1096
++A +NL ++
Sbjct: 78 RIAVNHNLHHFL 89
Score = 69 (29.3 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 18/73 (24%), Positives = 29/73 (39%)
Query: 1523 RSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQXXXXXX 1582
+ +L+E+CA N W P F +E G + + V +EI E G+ +
Sbjct: 839 KGKLFEICAKNKWPNPIFSVEEERGQQNEQKIVCSVKIEIPNIEGTFHIKGDAKPTKKEA 898
Query: 1583 XXXXXXXMLWCLE 1595
M+ LE
Sbjct: 899 ENSSADHMIRALE 911
>WB|WBGene00008400 [details] [associations]
symbol:drh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0035188 "hatching" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0007276 "gamete generation" evidence=IMP]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0070063 "RNA polymerase binding" evidence=IPI] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0070090 "metaphase plate"
evidence=IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IMP] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0035188 GO:GO:0040010 GO:GO:0003727 GO:GO:0006974
GO:GO:0003725 GO:GO:0000794 GO:GO:0030422 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
GO:GO:0043186 GO:GO:0008186 eggNOG:COG1111
GeneTree:ENSGT00510000046789 KO:K12646 EMBL:Z79752 GO:GO:0070090
PIR:T20332 RefSeq:NP_492161.3 ProteinModelPortal:Q93413 SMR:Q93413
IntAct:Q93413 MINT:MINT-6178703 STRING:Q93413 PaxDb:Q93413
EnsemblMetazoa:D2005.5 GeneID:172546 KEGG:cel:CELE_D2005.5
UCSC:D2005.5 CTD:172546 WormBase:D2005.5 HOGENOM:HOG000018535
InParanoid:Q93413 OMA:ACNLIIK NextBio:875985 Uniprot:Q93413
Length = 1119
Score = 169 (64.5 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 74/283 (26%), Positives = 132/283 (46%)
Query: 58 IARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQK---SICIFLAP 113
+ R YQ EL + A+E +N ++ TG GKT +A+ L H+ + + S + L P
Sbjct: 370 VLRTYQEELVQPALEGKNCVIVAPTGSGKTEVAIYAA--LKHIEERTSQGKPSRVVLLVP 427
Query: 114 TVALV-QQQAKVIEESIG-FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY 171
+ LV QQ+ + ++ G ++V F GS+ S E+ V VM PQIL+ L
Sbjct: 428 KIPLVGQQKDRFLKYCNGMYEVNGF-HGSESSVSGTGRRDEVIATHVSVMTPQILINMLQ 486
Query: 172 ----HRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVG 227
+ + + +++IFDE H A NHPY I + + K P+I G+TAS V
Sbjct: 487 SVRQNERLYVSDFSMMIFDEVHKAA--KNHPYVLINQMVQEWKYEK-PQIIGLTASLSVK 543
Query: 228 KGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFV-SSPVVRVYQYGPVINDTSSSYV 286
N + +N + N+L ++ +A L + S + + ++ +D+ +
Sbjct: 544 VDGQKDEN--QMLNDIYNML-----ALINAPHLSTITRQSSIDELNEHVGKPDDSVELCL 596
Query: 287 TCSEQLAEIKREQYIS-ALSRKLHDHQSLRNTTKQLNRLHDSM 328
E + E+Y++ A + L + S+ +T + N + +M
Sbjct: 597 PAKENILRDYIERYLNHAHGKFLEELASMSKSTGRNNTIPPNM 639
Score = 153 (58.9 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 47/150 (31%), Positives = 75/150 (50%)
Query: 409 LLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH------FLVGV 461
+LRL L+ F + + I+FV + TA+ +S L K L + + +++G
Sbjct: 744 VLRLKNTLTNQFHVAPESRVIIFVTQRSTAQRVSDFLNESKVLDQFGNYGEQMVGYVLGT 803
Query: 462 NA-GLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA-SFI 519
N G + + L+KF +G L ++VAT V EEGLD+ C L+I+++ A +
Sbjct: 804 NKQGAVQQTSQEQQLTLDKFNNGRLKVIVATSVVEEGLDVTACNLIIKYNCSSGSAIQLV 863
Query: 520 QSRGRARMPQSEYAFL-VDSG-NQRELDLI 547
Q RGRAR S L V S N+ E + +
Sbjct: 864 QQRGRARAKNSRSVLLSVKSSINETETNAL 893
Score = 40 (19.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 1451 GYVPKTKSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKIS 1497
GYV T ++ ++S + + L ++ + V+ A V E L ++
Sbjct: 798 GYVLGTNKQGAVQQTSQEQQLTLDKFNNGRLKVIVATSVVEEGLDVT 844
>UNIPROTKB|I3LJY5 [details] [associations]
symbol:LOC100737466 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00510000046789 Ensembl:ENSSSCT00000022741 OMA:CKRAVDE
Uniprot:I3LJY5
Length = 319
Score = 237 (88.5 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 74/221 (33%), Positives = 115/221 (52%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ--KSICIFLAPTVA 116
RKYQLEL A +N I+ TGCGKT ++ LLI E HL + P+ K +F A +
Sbjct: 95 RKYQLELALPAQNGKNTIICAPTGCGKTFVS-LLICE-HHLKKFPRGRKGKVVFFAIQLP 152
Query: 117 LVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
+ +QQ V E +G+KV G + + C E+ ++ +++++ PQIL+ CL +
Sbjct: 153 VYEQQKSVFSKHFERLGYKVAGISGATS--DTVCV-EQIVENNDIIILTPQILVNCLTNG 209
Query: 174 FI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM----KVPRIFGMTASPVVGK 228
I + + L+IFDECH+ HPY IM ++ + +P++ G+TAS VG
Sbjct: 210 TIPSLSVFTLMIFDECHNTS--KQHPYNVIMFNYLDRKLGGSSDSLPQVIGLTASVGVGD 267
Query: 229 GASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSP 267
A +A + I L LD V + ++ E+LE V P
Sbjct: 268 -AKNKAEATEYICKLCASLDTSVIATVRDNLEELEEVVYKP 307
>ASPGD|ASPL0000054215 [details] [associations]
symbol:dclA species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 EMBL:BN001308
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EnsemblFungi:CADANIAT00002628 Uniprot:C8VQK5
Length = 411
Score = 237 (88.5 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 63/170 (37%), Positives = 89/170 (52%)
Query: 107 ICIFLAPTVALVQQQAKVIEESIGFKV-RTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQI 165
I IFL +V L +QA V+ ++ V R F L S W + +++Y V+V ++
Sbjct: 42 ISIFLVDSVTLSYKQAGVLRNNLDMNVGRIFGALGFDLWSRQTWTEFLEKYMVVVCTAEV 101
Query: 166 LLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM-KVPRIFGMTASP 224
L CL H I+ME I LL+FDE HH K +H A+I++D Y P K PR+ GMTASP
Sbjct: 102 LYQCLLHAHIRMEQINLLVFDEAHHT--KKDHVCARIIRDSYFPTAQSKRPRVLGMTASP 159
Query: 225 VVGKGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQY 274
V KG AQA + +LE LD+K+ + + V P + Y
Sbjct: 160 VDTKGDVAQAAM-----NLELYLDSKIATASQLSLVHQVVRRPKEEAWIY 204
Score = 60 (26.2 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 419 FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNA----GLKSMSRNAMK 474
+R + +VF R T L + L+ + R L+GV A G + R
Sbjct: 310 YRETPETRSLVFTTRRYTTLMLLELFNALE-MPHLRPGLLIGVQANDFAGPEISCREQFL 368
Query: 475 SILEKFRSGELNLLV 489
+I ++FRSGE+N L+
Sbjct: 369 AI-DRFRSGEINCLI 382
Score = 39 (18.8 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 275 GPVINDTSSSYVTCSEQLAEIKREQY--ISALSRKLHDHQSLRNT 317
G ND + ++C EQ I R + I+ L R D R +
Sbjct: 350 GVQANDFAGPEISCREQFLAIDRFRSGEINCLIRPFCDFSGRRRS 394
>WB|WBGene00001090 [details] [associations]
symbol:drh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016246
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 HSSP:P10081
EMBL:AF480439 EMBL:FO080250 PIR:T32534 RefSeq:NP_501018.1
UniGene:Cel.32668 ProteinModelPortal:G5EDI8 SMR:G5EDI8
IntAct:G5EDI8 EnsemblMetazoa:F15B10.2 GeneID:177425
KEGG:cel:CELE_F15B10.2 CTD:177425 WormBase:F15B10.2 OMA:YRMINIR
NextBio:896758 Uniprot:G5EDI8
Length = 1037
Score = 167 (63.8 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 69/246 (28%), Positives = 112/246 (45%)
Query: 49 QKTDKDPKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSI 107
Q+ + + R YQ ELC+ A++ +N IV TG GKT IA +I E K
Sbjct: 283 QRIHRQRQLCLRNYQEELCQVALQGKNTIVTAPTGSGKTVIAANIIKEHFESRSSEGKRF 342
Query: 108 -CIFLAPTVALVQQQAKVIEESIGFKVRT-FCGGSKRLKSHCDWEKEIDQYEVLVMIPQI 165
+F+ P ++ QQA I + T GS + + I +++V PQ+
Sbjct: 343 KALFMTPNSMILNQQAASISSYLDHVYHTQIIQGSDNVPTR----NVIQSKDLIVATPQM 398
Query: 166 LL-YCLYHR-----------FIKMELIALLIFDECHHAQVKSNHPYAKIMKDFY------ 207
++ C HR F + ++ FDECH+ VK N PY+ IM++++
Sbjct: 399 IVNLCNEHRNSLDDESRLDQFF-LSTFTIIFFDECHNT-VK-NSPYSNIMREYHYLKNMG 455
Query: 208 -KPDIMKVPRIFGMTASPVVGKGASAQA-NLPKSINSLENLLDAKVYSV--EDAEDLESF 263
P+ +P+I G+TAS +G G + I L +D K S+ ++ E+L +
Sbjct: 456 NMPEGHSLPQIIGLTAS--LGTGDKNDCLQVRNYIAGLCASMDVKDLSIVKDNLEELRGY 513
Query: 264 VSSPVV 269
SP+V
Sbjct: 514 --SPIV 517
Score = 146 (56.5 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 46/164 (28%), Positives = 80/164 (48%)
Query: 426 KCIVFVNRIVTARALSYILQNLK--FLASWRCHFLVGVNAGLKS---MSRNAMKSI--LE 478
+ I+FV A L+ +L + + + + ++ G+N S +S + K + L+
Sbjct: 701 RTIIFVRTRYEATILNKVLNSNEELLMLGIKSEWMSGLNKSTASSADISASKQKQMEKLK 760
Query: 479 KFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDS 538
F GE+ +LV+T V EEGLD+ C LVI+++ + +Q RGR R SE + +S
Sbjct: 761 MFADGEIRILVSTSVAEEGLDVPECSLVIKYNYATNEIAHVQRRGRGRALNSECVLITNS 820
Query: 539 GNQRELDLIKNFSKEEDRMNREI-MDRTSSDAFT-CSEERIYKV 580
R+ + N +E M+ I + + S F C +E K+
Sbjct: 821 IALRDQE--SNNRDKESLMSETISLIQNSPAEFRKCVDEESNKI 862
>UNIPROTKB|D4A8D9 [details] [associations]
symbol:Ddx58 "Protein Ddx58" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR007087
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00028
PROSITE:PS51194 SMART:SM00490 RGD:1309460 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 IPI:IPI00952196
Ensembl:ENSRNOT00000065299 ArrayExpress:D4A8D9 Uniprot:D4A8D9
Length = 704
Score = 231 (86.4 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 118/424 (27%), Positives = 192/424 (45%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKP--QKSICIFLAPTVA 116
R YQLEL A + +N ++ TGCGKT ++ LLI E HL P QK +F A +
Sbjct: 200 RNYQLELALPAKKGKNTVICAPTGCGKTFVS-LLICE-HHLKNFPHGQKGKVVFFANQIP 257
Query: 117 LVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
+ +QQA V E G+ V G + + + I+ +++++ PQIL+ L +
Sbjct: 258 VYEQQATVFSRYFERFGYNVAGISGATA---DNVSVQHIIENNDIVILTPQILVNSLNNG 314
Query: 174 FI-KMELIALLIFDECHHAQVKSNHPYAKIMKDF--YK----PDIMKVPRIFGMTASPVV 226
I + + L+IFDECH+ +HPY +IM + +K PD +P++ G+TAS V
Sbjct: 315 AIPSLSVFTLMIFDECHNTS--KHHPYNQIMFRYLDHKLGGSPD--PLPQVIGLTASVGV 370
Query: 227 GKGASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSPVVRVYQYGPVINDTSSS 284
G + +A L I L LDA V + ++ E+LE V P + + +S+
Sbjct: 371 GDAKTEEAML--HICKLCAALDASVIATVRDNVEELEQXVYKP----QKISRKVESRASN 424
Query: 285 YVTC--SEQLAEIKR-EQYISALSRKLHDHQSLRNTTKQLNR----LHDSMKFCL----E 333
C S+ + E +R + +S K Q+ T++ + +H + + E
Sbjct: 425 TFKCIISQLMREAERLAKNVSEELGKFFQIQNREFGTQKYEQWIVAVHKACTVFMPDKDE 484
Query: 334 NLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASD 393
+C AL ++ S + LI +E + D+L + +V A D D
Sbjct: 485 ESRICKAL---FLYTSHLRKYNDALIISEDAQMKDALNYLKAFFHDVREAAF--DETEQD 539
Query: 394 LSC-----IEVL----KEPFFSKKLLR-LIGILSTFRLQQHMKCIVFVNRIVTARALS-Y 442
L+ +E L +EP + LR L IL + L+ K I+FV AL +
Sbjct: 540 LTRRFEEKVEELENVSREPSNENRKLRDLYLILQEYHLKPETKTILFVKTRALVDALKKW 599
Query: 443 ILQN 446
I +N
Sbjct: 600 IEEN 603
Score = 155 (59.6 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 92/353 (26%), Positives = 156/353 (44%)
Query: 209 PDIMKVPRIFGMTASPVVG--KGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSS 266
PD +P++ G+TAS VG K A ++ K +L+ + A V ++ E+LE V
Sbjct: 355 PD--PLPQVIGLTASVGVGDAKTEEAMLHICKLCAALDASVIATVR--DNVEELEQXVYK 410
Query: 267 PVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNR--- 323
P + ++T ++ + AE + + +S K Q+ T++ +
Sbjct: 411 PQKISRKVESRASNTFKCIISQLMREAE-RLAKNVSEELGKFFQIQNREFGTQKYEQWIV 469
Query: 324 -LHDSMKFCL----ENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQAS 378
+H + + E +C AL ++ S + LI +E + D+L +
Sbjct: 470 AVHKACTVFMPDKDEESRICKAL---FLYTSHLRKYNDALIISEDAQMKDALNYLKAFFH 526
Query: 379 EVFAAICRRDGIASDLSC-----IEVL----KEPFFSKKLLR-LIGILSTFRLQQHMKCI 428
+V A D DL+ +E L +EP + LR L IL + L+ K I
Sbjct: 527 DVREAAF--DETEQDLTRRFEEKVEELENVSREPSNENRKLRDLYLILQEYHLKPETKTI 584
Query: 429 VFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS--MSRNAMKSILEKFRSG-EL 485
+FV AL ++ L+ + L G ++ M+ A K +LE FR+ +
Sbjct: 585 LFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNQATGMTLPAQKCVLEAFRANADN 644
Query: 486 NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDS 538
N+L+AT V +E +DI C LVI ++ V + IQ+RGR R S+ FL+ S
Sbjct: 645 NILIATSVADERIDIAQCNLVILYEYVGNVINMIQTRGRGRARDSK-CFLLTS 696
>UNIPROTKB|D4ADT5 [details] [associations]
symbol:Ddx58 "Protein Ddx58" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR007087 InterPro:IPR011545 Pfam:PF00270
PROSITE:PS00028 RGD:1309460 GO:GO:0005524 GO:GO:0008270
GO:GO:0003676 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00510000046789 IPI:IPI00778544
Ensembl:ENSRNOT00000060765 ArrayExpress:D4ADT5 Uniprot:D4ADT5
Length = 596
Score = 228 (85.3 bits), Expect = 5.5e-15, P = 5.5e-15
Identities = 75/223 (33%), Positives = 115/223 (51%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKP--QKSICIFLAPTVA 116
R YQLEL A + +N ++ TGCGKT ++ LLI E HL P QK +F A +
Sbjct: 245 RNYQLELALPAKKGKNTVICAPTGCGKTFVS-LLICE-HHLKNFPHGQKGKVVFFANQIP 302
Query: 117 LVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
+ +QQA V E G+ V G + + + I+ +++++ PQIL+ L +
Sbjct: 303 VYEQQATVFSRYFERFGYNVAGISGATA---DNVSVQHIIENNDIVILTPQILVNSLNNG 359
Query: 174 FI-KMELIALLIFDECHHAQVKSNHPYAKIMKDF--YK----PDIMKVPRIFGMTASPVV 226
I + + L+IFDECH+ +HPY +IM + +K PD +P++ G+TAS V
Sbjct: 360 AIPSLSVFTLMIFDECHNTS--KHHPYNQIMFRYLDHKLGGSPD--PLPQVIGLTASVGV 415
Query: 227 GKGASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSP 267
G + +A L I L LDA V + ++ E+LE V P
Sbjct: 416 GDAKTEEAML--HICKLCAALDASVIATVRDNVEELEQXVYKP 456
>RGD|1309460 [details] [associations]
symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 58"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR007087 InterPro:IPR011545 InterPro:IPR021673
Pfam:PF00270 Pfam:PF00271 Pfam:PF11648 PROSITE:PS00028
PROSITE:PS51194 SMART:SM00490 RGD:1309460 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 IPI:IPI00780835
Ensembl:ENSRNOT00000060764 UCSC:RGD:1309460 ArrayExpress:D4ADT6
Uniprot:D4ADT6
Length = 922
Score = 231 (86.4 bits), Expect = 5.6e-15, P = 5.6e-15
Identities = 118/424 (27%), Positives = 192/424 (45%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKP--QKSICIFLAPTVA 116
R YQLEL A + +N ++ TGCGKT ++ LLI E HL P QK +F A +
Sbjct: 244 RNYQLELALPAKKGKNTVICAPTGCGKTFVS-LLICE-HHLKNFPHGQKGKVVFFANQIP 301
Query: 117 LVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
+ +QQA V E G+ V G + + + I+ +++++ PQIL+ L +
Sbjct: 302 VYEQQATVFSRYFERFGYNVAGISGATA---DNVSVQHIIENNDIVILTPQILVNSLNNG 358
Query: 174 FI-KMELIALLIFDECHHAQVKSNHPYAKIMKDF--YK----PDIMKVPRIFGMTASPVV 226
I + + L+IFDECH+ +HPY +IM + +K PD +P++ G+TAS V
Sbjct: 359 AIPSLSVFTLMIFDECHNTS--KHHPYNQIMFRYLDHKLGGSPD--PLPQVIGLTASVGV 414
Query: 227 GKGASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSPVVRVYQYGPVINDTSSS 284
G + +A L I L LDA V + ++ E+LE V P + + +S+
Sbjct: 415 GDAKTEEAML--HICKLCAALDASVIATVRDNVEELEQXVYKP----QKISRKVESRASN 468
Query: 285 YVTC--SEQLAEIKR-EQYISALSRKLHDHQSLRNTTKQLNR----LHDSMKFCL----E 333
C S+ + E +R + +S K Q+ T++ + +H + + E
Sbjct: 469 TFKCIISQLMREAERLAKNVSEELGKFFQIQNREFGTQKYEQWIVAVHKACTVFMPDKDE 528
Query: 334 NLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAAICRRDGIASD 393
+C AL ++ S + LI +E + D+L + +V A D D
Sbjct: 529 ESRICKAL---FLYTSHLRKYNDALIISEDAQMKDALNYLKAFFHDVREAAF--DETEQD 583
Query: 394 LSC-----IEVL----KEPFFSKKLLR-LIGILSTFRLQQHMKCIVFVNRIVTARALS-Y 442
L+ +E L +EP + LR L IL + L+ K I+FV AL +
Sbjct: 584 LTRRFEEKVEELENVSREPSNENRKLRDLYLILQEYHLKPETKTILFVKTRALVDALKKW 643
Query: 443 ILQN 446
I +N
Sbjct: 644 IEEN 647
Score = 163 (62.4 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 98/377 (25%), Positives = 165/377 (43%)
Query: 209 PDIMKVPRIFGMTASPVVG--KGASAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSS 266
PD +P++ G+TAS VG K A ++ K +L+ + A V ++ E+LE V
Sbjct: 399 PD--PLPQVIGLTASVGVGDAKTEEAMLHICKLCAALDASVIATVR--DNVEELEQXVYK 454
Query: 267 PVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNR--- 323
P + ++T ++ + AE + + +S K Q+ T++ +
Sbjct: 455 PQKISRKVESRASNTFKCIISQLMREAE-RLAKNVSEELGKFFQIQNREFGTQKYEQWIV 513
Query: 324 -LHDSMKFCL----ENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQAS 378
+H + + E +C AL ++ S + LI +E + D+L +
Sbjct: 514 AVHKACTVFMPDKDEESRICKAL---FLYTSHLRKYNDALIISEDAQMKDALNYLKAFFH 570
Query: 379 EVFAAICRRDGIASDLSC-----IEVL----KEPFFSKKLLR-LIGILSTFRLQQHMKCI 428
+V A D DL+ +E L +EP + LR L IL + L+ K I
Sbjct: 571 DVREAAF--DETEQDLTRRFEEKVEELENVSREPSNENRKLRDLYLILQEYHLKPETKTI 628
Query: 429 VFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS--MSRNAMKSILEKFRSG-EL 485
+FV AL ++ L+ + L G ++ M+ A K +LE FR+ +
Sbjct: 629 LFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNQATGMTLPAQKCVLEAFRANADN 688
Query: 486 NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELD 545
N+L+AT V +E +DI C LVI ++ V + IQ+RGR R S+ L S + E +
Sbjct: 689 NILIATSVADERIDIAQCNLVILYEYVGNVINMIQTRGRGRARDSKCFLLTSSADVIEKE 748
Query: 546 LIKNFSKEEDRMNREIM 562
N KE+ MN I+
Sbjct: 749 KA-NMVKEKI-MNESIL 763
>TAIR|locus:2126111 [details] [associations]
symbol:AT4G00420 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
EMBL:CP002687 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
IPI:IPI00517962 RefSeq:NP_849275.1 UniGene:At.70232
ProteinModelPortal:F4JHB3 SMR:F4JHB3 PRIDE:F4JHB3
EnsemblPlants:AT4G00420.2 GeneID:828061 KEGG:ath:AT4G00420
OMA:RITVLEC PhylomeDB:F4JHB3 Uniprot:F4JHB3
Length = 190
Score = 165 (63.1 bits), Expect = 9.8e-15, Sum P(2) = 9.8e-15
Identities = 40/121 (33%), Positives = 57/121 (47%)
Query: 1482 NVVAADDN-VFEKLKISEPQGGSSCDIGSPSLTTGGLQNRSARSRLYELCAANCWKPPTF 1540
NV + N E +SEP+ P+ T Q SA+S+LY LC+ WK P +
Sbjct: 45 NVTQMEPNFTLENTLVSEPEADLRPHTTEPT-TEEETQRSSAKSQLYNLCSVRHWKAPLY 103
Query: 1541 DCCKEEGLSHLKLFTFRVIVEIEAPEKI--IECIGEPQXXXXXXXXXXXXXMLWCLEREG 1598
+ E G H+K+FT +V VE++ +I +EC G PQ LW L+ G
Sbjct: 104 EYIAE-GPCHMKIFTGKVTVEMKEDSRITVLECFGNPQYKKKIAAEQAAEAALWYLKNVG 162
Query: 1599 Y 1599
Y
Sbjct: 163 Y 163
Score = 66 (28.3 bits), Expect = 9.8e-15, Sum P(2) = 9.8e-15
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 643 PQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEP 684
P SS A+K L+ E K+ LND + +EDN T+ EP
Sbjct: 12 PISSFSVAQKRMLLQRCESKFKIRKLNDTV--EEDNVTQMEP 51
>DICTYBASE|DDB_G0268410 [details] [associations]
symbol:drnB "putative RNase III" species:44689
"Dictyostelium discoideum" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 dictyBase:DDB_G0268410 GenomeReviews:CM000150_GR
Gene3D:3.30.160.20 EMBL:AAFI02000003 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:XP_647462.2 ProteinModelPortal:Q55FS1
EnsemblProtists:DDB0231869 GeneID:8616269 KEGG:ddi:DDB_G0268410
OMA:NEYENEY ProtClustDB:CLSZ2431100 Uniprot:Q55FS1
Length = 1385
Score = 197 (74.4 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 51/144 (35%), Positives = 78/144 (54%)
Query: 1152 KKTIADVVEALVGA-FIDDSGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASL 1210
+K ADV+EAL+GA +ID F+A + WI + + E + + + A L
Sbjct: 1160 RKPQADVIEALIGAVYIDRGFFEAYKLTVCWIFDEPDAEYPIYNTKFEETLAHQEIRAFL 1219
Query: 1211 DMATLEILLGHQFLHRGLLLQAFVHP-SFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYP 1269
D +G H LL +A P SF+ YQRLE++GDAVLD+ ++ +LY+ +P
Sbjct: 1220 DG------IGVHISHSSLLEEALCFPYSFHSASKSYQRLEYVGDAVLDFFVSDFLYATFP 1273
Query: 1270 KLKPGQLTDLRSMLVNNQAFANVA 1293
+ GQLTD RS LV N ++++
Sbjct: 1274 LAQEGQLTDYRSRLVRNSNLSSIS 1297
Score = 92 (37.4 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIR 1097
+RLE LGD+ LK +LF + + EG L++ RS+ N +LL ++ R L+ +R
Sbjct: 1095 QRLEFLGDSVLKLVSTIYLFFKYPKMSEGFLSQTRSDFTKNDHLLDVSKRLGLEEILR 1152
Score = 48 (22.0 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 1337 KVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSN 1377
K LGD +ES +G +D+ + ++ +LD L+ N
Sbjct: 1317 KKLGDYLESFIGCCFVDTTQSFEYTKSLVYKYLD--LRIDN 1355
>TAIR|locus:2198898 [details] [associations]
symbol:RTL1 "RNAse THREE-like protein 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 EMBL:CP002684 GenomeReviews:CT485782_GR
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 EMBL:AC018849
EMBL:AK117343 EMBL:BT005219 IPI:IPI00546074 PIR:G96838
RefSeq:NP_178180.1 UniGene:At.33884 ProteinModelPortal:Q9M8N2
SMR:Q9M8N2 IntAct:Q9M8N2 EnsemblPlants:AT1G80650.1 GeneID:844404
KEGG:ath:AT1G80650 TAIR:At1g80650 eggNOG:NOG249826
HOGENOM:HOG000064708 InParanoid:Q9M8N2 OMA:CASKRWR PhylomeDB:Q9M8N2
ProtClustDB:CLSN2914440 Genevestigator:Q9M8N2 Uniprot:Q9M8N2
Length = 198
Score = 175 (66.7 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 1521 SARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIE--APEKIIECIGEPQXX 1578
SA+S L+E+CA+ W+PP ++CC +G HL+LFT++V+VEI + + ++EC G+P+
Sbjct: 114 SAKSVLHEMCASKRWRPPVYECCNVDGPCHLRLFTYKVMVEIRDSSGKTVLECFGDPRRK 173
Query: 1579 XXXXXXXXXXXMLWCLE 1595
LW LE
Sbjct: 174 KKAAAEHAAEGALWYLE 190
Score = 52 (23.4 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 1269 PKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTRE 1328
P L P + ++ M ++ NV + Q F + F I+++ + I P+STR
Sbjct: 25 PPLDPSSIPSMKPMAQDHH---NVGM-QRFQEKTDFKFEEEDNAISSFSNIQIDPNSTRS 80
Query: 1329 VK-EGPRCPK 1337
+ E PK
Sbjct: 81 ISLEKKLAPK 90
>CGD|CAL0005976 [details] [associations]
symbol:MPH1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0000725 "recombinational
repair" evidence=IEA] [GO:0060543 "negative regulation of strand
invasion" evidence=IEA] [GO:0070336 "flap-structured DNA binding"
evidence=IEA] [GO:0043138 "3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0005976 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006281 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 EMBL:AACQ01000084 EMBL:AACQ01000083
KO:K14635 RefSeq:XP_715573.1 RefSeq:XP_715628.1
ProteinModelPortal:Q5A1A0 STRING:Q5A1A0 GeneID:3642769
GeneID:3642817 KEGG:cal:CaO19.10436 KEGG:cal:CaO19.2919
Uniprot:Q5A1A0
Length = 1187
Score = 153 (58.9 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 52/168 (30%), Positives = 77/168 (45%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQ + ++A +N++V L TG GKT IA ++ P I IF+APT LV
Sbjct: 138 RDYQYNIVERAFYDNLLVALPTGLGKTFIASTVMLNFLRWF--PISKI-IFMAPTRPLVA 194
Query: 120 QQAKVIEESIGF---KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIK 176
QQ K G KV ++R ++ W +V PQ++ L +
Sbjct: 195 QQIKACCSIAGIPSSKVAILLDKTRRNRAEI-WNSR----QVFFTTPQVVENDLASGVVN 249
Query: 177 MELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224
+ IALL+ DE H A K N+ Y ++K + RI +TA+P
Sbjct: 250 PKSIALLVIDEAHRA--KGNYSYNNVVKFINR--FSDSYRILALTATP 293
Score = 138 (53.6 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 32/85 (37%), Positives = 45/85 (52%)
Query: 462 NAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQS 521
NA + MS+ K I++KF+ G N+LVAT +GEEGLDI L+I +D + IQ
Sbjct: 570 NAQMTGMSQKLQKEIIKKFKKGVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQR 629
Query: 522 RGRA-RMPQSEYAFLVDSGNQRELD 545
GR R + L S + + D
Sbjct: 630 MGRTGRKRDGKVLMLFSSNEESKFD 654
Score = 53 (23.7 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 517 SFIQSRGRARMPQSEYAFLVDS-GNQRELDLIKNFSKEEDRMNREIMDR--TSSDAFTCS 573
S+ + ++ Q +DS E ++I+N EE+++++ + TS D
Sbjct: 838 SYSEPENNNQVNQESVTANLDSVARVPEPEVIENSESEEEQISKITHNTPATSVDLSNGP 897
Query: 574 EERIYKVDS 582
EE YK+DS
Sbjct: 898 EETSYKIDS 906
Score = 39 (18.8 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 953 DSESHELEEYFDDLPPELCQL 973
D+E ++E D + PE+C+L
Sbjct: 921 DTEGDKVE-VIDAVSPEVCKL 940
Score = 38 (18.4 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 1233 FVHPSFNRLGGCYQRLEFLG 1252
F+ +G CY+RL G
Sbjct: 402 FILQLLGMVGQCYRRLNIYG 421
>ASPGD|ASPL0000062874 [details] [associations]
symbol:AN10063 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR003903 SMART:SM00726 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 HOGENOM:HOG000076770
EnsemblFungi:CADANIAT00002426 OMA:YNTIVAT Uniprot:C8VUA7
Length = 971
Score = 143 (55.4 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 46/168 (27%), Positives = 80/168 (47%)
Query: 422 QQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNA--GLKSMSRNAMKSILEK 479
Q + ++FV+ +A ++ +L+ + + R H VG ++ G + M + I++K
Sbjct: 529 QTATRVMIFVHFRDSAEEVTRVLKRYEPMI--RPHVFVGQSSAKGSEGMGQKTQLDIIQK 586
Query: 480 FRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAFLVDS 538
F+ G N +VAT +GEEGLDI L++ +D + +Q GR R L+
Sbjct: 587 FKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQ 646
Query: 539 GNQRELDLIKNFSKEEDRMNREIMDR--TSSDAFTCSEERIYKVDSSG 584
G + E N+ K +D N E M + S FT ++R ++ G
Sbjct: 647 GKEEE-----NYLKAKD--NYEKMQQLIASGSQFTFHDDRSPRIIPRG 687
Score = 134 (52.2 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 59/217 (27%), Positives = 96/217 (44%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQ + +K + N++V L TG GKT IA + + + +R + + IF+APT LV
Sbjct: 161 RDYQFNITQKGLFYNLLVALPTGLGKTFIAATI---MLNWLRWTKSAQIIFVAPTKPLVA 217
Query: 120 QQAKVIEESIGF--KVRTFCGGSKR--LKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI 175
QQ G T G +++ +W+ + V M PQ L L
Sbjct: 218 QQISACLRIAGIPRSQTTMLTGEAPPGIRAE-EWKSK----RVFFMTPQTLTNDLKSGIA 272
Query: 176 KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGA-SAQA 234
+ I LL+ DE H A + Y +++K F + R+ +TA+P G S QA
Sbjct: 273 DPKRIVLLVVDEAHRAT--GGYAYVEVVK-FLRRFNQSF-RVLALTATP--GSTVESVQA 326
Query: 235 -----NLPKSINSLENLLDAKVYSVEDAEDLESFVSS 266
++ + E+ LD + Y D+++F +S
Sbjct: 327 VIDGLDIARVEIRTEHSLDIREYVHARNTDIQTFQNS 363
Score = 40 (19.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 34/127 (26%), Positives = 49/127 (38%)
Query: 213 KVPRIFGMTASPVVGKGASAQANLPKSINSL---ENLLDAKVYS-VEDAEDLESFVSSPV 268
K R+F MT + S A+ PK I L E Y+ VE + L F S
Sbjct: 251 KSKRVFFMTPQTLTNDLKSGIAD-PKRIVLLVVDEAHRATGGYAYVEVVKFLRRFNQS-- 307
Query: 269 VRVYQYGPVINDTSSSYVTCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSM 328
RV T S + L +I R + + S + ++ RNT Q + D M
Sbjct: 308 FRVLALTATPGSTVESVQAVIDGL-DIARVEIRTEHSLDIREYVHARNTDIQTFQNSDEM 366
Query: 329 KFCLENL 335
C++ L
Sbjct: 367 ILCMDLL 373
>DICTYBASE|DDB_G0274841 [details] [associations]
symbol:fncM "ATP-dependent DNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274841 GO:GO:0005524
GO:GO:0003677 GO:GO:0006974 EMBL:AAFI02000012 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1111
KO:K10896 RefSeq:XP_644014.1 ProteinModelPortal:Q8T145
EnsemblProtists:DDB0217507 GeneID:8619444 KEGG:ddi:DDB_G0274841
InParanoid:Q8T145 Uniprot:Q8T145
Length = 1789
Score = 172 (65.6 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 63/216 (29%), Positives = 95/216 (43%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
P+ R+YQ + + A EN ++ L TG GKT IA +L+ H P KS +FL T
Sbjct: 469 PEDNIREYQFKFIQSAFLENTMICLPTGLGKTFIASILMLNYYHWF--P-KSKLVFLVHT 525
Query: 115 VALVQQQAKVIEESIGFKVRT---FCGGS-KRLKSHCDWEKEIDQYEVLVMIPQILLYCL 170
+LV QQ + G F G + +LK W + V PQIL +
Sbjct: 526 KSLVSQQIEAFHRDTGIPKSDSIQFTGDTTSKLKRQSLWNSK----RVFFSTPQILANDI 581
Query: 171 YHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGA 230
I ++ DE H AQ N+ Y +K K + + R+ +TA+P
Sbjct: 582 GSGNCDPRSICCIVIDEAHRAQ--GNYDYCVAIKLILK--VNRFFRVLALTATP-----G 632
Query: 231 SAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSS 266
S A + K IN+L L+ ED+ D++ ++ S
Sbjct: 633 SNNAAIQKVINNL--LISNMELRSEDSADIKPYIHS 666
Score = 123 (48.4 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 40/142 (28%), Positives = 68/142 (47%)
Query: 464 GLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRG 523
G+K + + ++IL F +G++N+LV+T +GEEGLDI LV+ +D+ ++ Q G
Sbjct: 878 GVKGIHKKEQQAILNSFVNGDINVLVSTCIGEEGLDIGEVDLVVCYDVQQSSLKNTQRTG 937
Query: 524 RA-RMPQSEYAFLVDSG--------NQRELDLIKNFSKEED---RMNREIMDRTSSDAFT 571
R R FL+ G +Q LD + N KE + +++D +
Sbjct: 938 RTGRKRDGRCIFLITQGYEEYIYEKSQSNLDSLSNL-KESSFVFHYSPKMIDSIPLVKYI 996
Query: 572 -CSEERIYKVDSSGACISAGYG 592
+E IY D + ++ G G
Sbjct: 997 KINENNIYSNDDNDIELNDGGG 1018
Score = 38 (18.4 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 651 KKDACLKAIEDLHKLGALNDYLLPQED-NATED 682
+K L IE K+G + + + D +ED
Sbjct: 1671 RKGGLLSVIEKFEKIGQHEEEFIDENDYTGSED 1703
>POMBASE|SPAC9.05 [details] [associations]
symbol:fml1 "ATP-dependent 3' to 5' DNA helicase, FANCM
ortholog Fml1" species:4896 "Schizosaccharomyces pombe" [GO:0000732
"strand displacement" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=IDA] [GO:0031297 "replication
fork processing" evidence=IMP] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IC]
[GO:0071821 "FANCM-MHF complex" evidence=ISS] [GO:0071932
"replication fork reversal" evidence=IDA] [GO:2000042 "negative
regulation of double-strand break repair via homologous
recombination" evidence=IMP] [GO:0003690 "double-stranded DNA
binding" evidence=ISS] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC9.05 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000732 GO:GO:0009378
GO:GO:0071821 eggNOG:COG1111 GO:GO:0033567 GO:GO:0071932 PIR:T39190
RefSeq:NP_593348.2 ProteinModelPortal:Q9UT23 STRING:Q9UT23
EnsemblFungi:SPAC9.05.1 GeneID:2543668 KEGG:spo:SPAC9.05
HOGENOM:HOG000076770 KO:K14635 OMA:RTENSID OrthoDB:EOG4JHGPV
NextBio:20804674 GO:GO:2000042 Uniprot:Q9UT23
Length = 834
Score = 153 (58.9 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 54/186 (29%), Positives = 87/186 (46%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQ + +KA+ EN++V L TG GKT IA ++ + + +R KS +F+APT LV
Sbjct: 74 RDYQFNIVQKALFENVLVALPTGLGKTFIAAVV---MMNYLRWFPKSYIVFMAPTKPLVT 130
Query: 120 QQAKVIEESIGF-KVRTFCGGSKRLKSHCDWEKEIDQYE---VLVMIPQILLYCLYHRFI 175
QQ + + G K +T L H Y+ V + PQ +L + H
Sbjct: 131 QQMEACYKITGIPKSQT-----AELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIKHGIC 185
Query: 176 KMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQAN 235
I+ L+ DE H + N+ Y +++ + K RI ++A+P G A N
Sbjct: 186 DRTRISCLVIDEAHRST--GNYAYVEVVHLLSLSN--KNFRILALSATP--GNKLEAIQN 239
Query: 236 LPKSIN 241
+ S++
Sbjct: 240 VIDSLH 245
Score = 129 (50.5 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 38/141 (26%), Positives = 69/141 (48%)
Query: 443 ILQNL-KFLASWRCHFLVGVNAGLKS--MSRNAMKSILEKFRSGELNLLVATKVGEEGLD 499
IL+ L KF + R +G +A K+ MS+ +++F+ GE+N L+AT +GEEGLD
Sbjct: 448 ILRFLGKFYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLD 507
Query: 500 IQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNR 559
I ++I +D + +Q GR + Y +++ + + E + + +D R
Sbjct: 508 IGEVDMIICYDASASPIRMLQRMGRTGRKRKGYIYMLLTRGKEEA----KWERAKDAY-R 562
Query: 560 EIMDRTSSDAFTCSEERIYKV 580
+ D S E+ Y++
Sbjct: 563 TLQDNIVSGRGLSLSEKSYRI 583
Score = 39 (18.8 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 243 LENLLDAKVYSVEDAEDLESF 263
L+ L Y +++A+D+ SF
Sbjct: 294 LQKLNKGNYYRIQNAKDITSF 314
>UNIPROTKB|G3MWK8 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271
Pfam:PF04851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 EMBL:DAAA02049179
EMBL:DAAA02049177 EMBL:DAAA02049178 Ensembl:ENSBTAT00000065634
Uniprot:G3MWK8
Length = 480
Score = 212 (79.7 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 120/478 (25%), Positives = 207/478 (43%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
R YQ E+ A+E +NII++L TG GKT A + HL + + L V LV
Sbjct: 4 RPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVARR--HLETVDGAKVVV-LVNRVHLV 60
Query: 119 QQQAKVIEESIG--FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY----H 172
Q + + + + T G + + ++++L+ ++L L
Sbjct: 61 TQHCEEFSRMLERRWTITTLSGD---MGPRAGFGHVARRHDLLICTAELLQKALASPEEE 117
Query: 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK---VPRIFGMTASPVVGKG 229
+++ +LL+ DECHH + Y I+ + + + + +P++ G+TASP G
Sbjct: 118 EHVELNAFSLLVVDECHHTH--KDTVYNIILSQYLELKLQRTRPLPQVLGLTASPGTGGV 175
Query: 230 ASAQANLPKSINSLENLLDAKVYSVED-AEDLESFVSSPVVRVYQYGPVINDTSSSYVTC 288
++ + + + NL + S +D + L+ P QY T +
Sbjct: 176 STLEGAIDHVLQLCANLDTWCIMSPKDHSPQLQEHSHQPCK---QYDLCHRRTQDPFGDM 232
Query: 289 SEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHAS-Y-- 345
++L + + R+ Q+ +L++ D+ + L V ALH Y
Sbjct: 233 LKKLMDQIHDHLEMPKLRRDFGTQTYEQQVVELSQ--DAAEAGLLEQRVY-ALHLRRYND 289
Query: 346 ILLSGDETMRNELIEAEGNTIDDSLCRFASQASEVFAA----ICRRDGIASDLSCIEVLK 401
LL D T+R ++A NT+ D R + +++ A + D ++L+ +
Sbjct: 290 ALLIHD-TVR--AVDAL-NTLRDFYNRERTTKTQILHAERWLLALFDDHKNELARLAT-S 344
Query: 402 EPFFSKKLLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW--RCHFL 458
P + KL L IL FR + I+F +A +L LQ L + R L
Sbjct: 345 GPE-NPKLEVLEAILQRQFRSPDSPRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIRPQVL 403
Query: 459 VGV-NAGLKS----MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDL 511
G N K+ M++ + +++KFR+G LNLLVAT V EEGLDI C +V+R+ L
Sbjct: 404 TGAGNNSQKTQMIQMTQRDQQEVIQKFRTGTLNLLVATSVAEEGLDIPQCNVVVRYGL 461
>UNIPROTKB|F1SI11 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071821 "FANCM-MHF complex" evidence=IEA] [GO:0043240
"Fanconi anaemia nuclear complex" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0031297 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821
GO:GO:0043240 InterPro:IPR010994 SUPFAM:SSF47781 OMA:QMGMRSL
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:CU570961
Ensembl:ENSSSCT00000005515 Uniprot:F1SI11
Length = 2054
Score = 153 (58.9 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 59/204 (28%), Positives = 96/204 (47%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQL + + A+ N +V L TG GKT IA +++Y P + +F+APT LV
Sbjct: 101 RDYQLNIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWF--PSGKV-VFMAPTKPLVT 157
Query: 120 QQAKVIEESIGFKVRTFCG--GSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIK 176
QQ + +G GS ++ + KEI D VL + PQ+++ L
Sbjct: 158 QQIEACYRVMGIPQSHMAEMTGSTQVFTR----KEIWDSKRVLFLTPQVMVNDLSRGACP 213
Query: 177 MELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANL 236
I L+ DE H A N+ Y +++++ K RI ++A+P G+ +A +
Sbjct: 214 AAEIKCLVIDEAHRAL--GNYAYCQVVRELVK--YTNHFRILALSATP----GSDIKA-V 264
Query: 237 PKSINSLENLLDAKVYSVEDAEDL 260
+ I +L L++ EDA D+
Sbjct: 265 QQVITNL--LIEQIELRSEDAPDI 286
Score = 118 (46.6 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 30/86 (34%), Positives = 46/86 (53%)
Query: 459 VGVNAG--LKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
VG +G +K ++ ++++FRSG N LV+T VGEEGLDI L+I FD ++
Sbjct: 518 VGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPI 577
Query: 517 SFIQSRGRA-RMPQSEYAFLVDSGNQ 541
+Q GR R Q ++ G +
Sbjct: 578 RLVQRMGRTGRKRQGRIVVILAEGRE 603
Score = 60 (26.2 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 28/129 (21%), Positives = 54/129 (41%)
Query: 1394 DLDLQFPSLKKGGKFLAEAKVT-GKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGY 1452
D+ F S+ K G F ++ K + K + S T S +E I Q K A
Sbjct: 798 DISSTF-SISKNGAFTSKKKSSFPKSINQDRSFLMTE-SDEEFAEIFKQTHIKPTKIASV 855
Query: 1453 VPKTKSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQGGSSCDIGSPSL 1512
K K+ + + K PK E + + D N +A +++F+ +++ + ++ +
Sbjct: 856 --KKKASKELKKGQPKKENKNVVIDSLDTNGNSATEDIFQVDLLNDKKASDIDEVAATGA 913
Query: 1513 TTGGLQNRS 1521
+ N+S
Sbjct: 914 INEYVANKS 922
Score = 50 (22.7 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 28/111 (25%), Positives = 46/111 (41%)
Query: 546 LIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGA-CISAGYGVSLLHRYCSKLP 604
L+ N S+ +D++ + + D EE++ K D G C + V+ +CS
Sbjct: 1186 LLDNNSEPQDQIIGDTVSWKHEDLRDVHEEKL-KNDEYGFDCSKYLFSVTFDLGFCSPDS 1244
Query: 605 HDEFF---NPKPKFYYFDDLGGTICHI--ILPANAPIHQIVGTPQSSMEAA 650
DE + K DDL G I I AN HQ P+ ++++
Sbjct: 1245 DDEILEHASDTNKNKVSDDLPGRHLDIKEISDANCVSHQ-AAIPRDQVDSS 1294
Score = 43 (20.2 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 50/234 (21%), Positives = 98/234 (41%)
Query: 385 CRRDGIAS-DLSCIEV--LKEPFFSKKLLRLIGILSTFRLQQHMK--CIVFVNRIVTARA 439
CR+ I S D +E F S L ++ RL Q + CI+ +R +T+
Sbjct: 1778 CRKHPIQSKDAGALEDSGTSAAFCSNSRPHLADTHASPRLPQEGQRTCILVDSREITSG- 1836
Query: 440 LSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLD 499
S ++ +L+ + ++ + +N G + N M + K +S L + K+ ++
Sbjct: 1837 -SEVISSLRAIHGFQVE-VCPLN-GCDYIVSNRMV-VERKSQSEMLTCINKNKLIDQIQY 1892
Query: 500 IQTC----CLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSG--------NQRELDLI 547
+Q+ C+++ D +T + R R + S L+ +G + DL+
Sbjct: 1893 LQSMFERICVIVEKDREKTGDTSRMLR-RTKSYDSLLTTLIGAGIRILFSSCQEETADLL 1951
Query: 548 KNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRYCS 601
K S E R N I T ++ C + Y + + I+A +++ H++ S
Sbjct: 1952 KELSLVEQRKNVGIHVPTVVNSNKCEALQFYLSIPNISYITA---LNMCHQFSS 2002
>UNIPROTKB|A4RN08 [details] [associations]
symbol:MPH1 "ATP-dependent DNA helicase MPH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0008026 eggNOG:COG1111
KO:K14635 OrthoDB:EOG4JHGPV RefSeq:XP_003713523.1
ProteinModelPortal:A4RN08 STRING:A4RN08 EnsemblFungi:MGG_04429T0
GeneID:2678216 KEGG:mgr:MGG_04429 Uniprot:A4RN08
Length = 1102
Score = 156 (60.0 bits), Expect = 8.8e-13, Sum P(3) = 8.8e-13
Identities = 49/168 (29%), Positives = 75/168 (44%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQ + K + N +V L TG GKT IA +I R Q +F+APT L
Sbjct: 141 RDYQFSIVKNGLFNNTLVALPTGLGKTFIAATVILNFFRWTRNAQM---VFVAPTKPLAS 197
Query: 120 QQAKVIEESIGF---KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIK 176
QQ + G + G +K + +WE + + M PQ L+ L +
Sbjct: 198 QQVEACLNIAGIPRSQSTLLTGETKPVLREAEWEGK----RLFFMTPQTLMNDLSKGYAD 253
Query: 177 MELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224
+ I LL+ DE H A ++ Y K++ +F + K R+ +TA+P
Sbjct: 254 PKRIVLLVVDEAHRAT--GDYAYVKVI-EFIRR-FSKSFRVLALTATP 297
Score = 121 (47.7 bits), Expect = 8.8e-13, Sum P(3) = 8.8e-13
Identities = 43/142 (30%), Positives = 65/142 (45%)
Query: 426 KCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS--MSRNAMKSILEKFRSG 483
+ IVF +A ++ +L K + S VG KS M + + KFR G
Sbjct: 505 RVIVFSEYRDSAEEITRVLNVHKPMIS--ASLFVGQADSKKSEGMKQKQQIETIAKFRDG 562
Query: 484 ELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAFLVDSGNQR 542
N+LVAT +GEEGLDI L+I +D + +Q GR R + L+ G +
Sbjct: 563 IFNVLVATSIGEEGLDIGQVDLIICYDASSSPIRMLQRMGRTGRKRAGKITLLLMKGKEE 622
Query: 543 ELDLIKNFSKEEDRMNREIMDR 564
+ N++K +D N E M +
Sbjct: 623 D-----NYAKAQD--NYEKMQK 637
Score = 45 (20.9 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 735 DPADRIYREFGLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSGIMQAQQ 785
+P+D + R LF ++L P ++ + +++ GR M+ + G+++A+Q
Sbjct: 341 EPSDEMLRISELFSQALKPLHSKISQQKIYI--GRDPMS-ITTFGLLKARQ 388
Score = 41 (19.5 bits), Expect = 8.8e-13, Sum P(3) = 8.8e-13
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 653 DACLKAIEDLHKLGALNDYLLPQEDNATEDEPM 685
+A +A ED +G+L D++ E N + M
Sbjct: 938 EAVTQASEDEESVGSLADFISDGEANGNFPKDM 970
>TIGR_CMR|CJE_1807 [details] [associations]
symbol:CJE_1807 "ribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_179777.1 ProteinModelPortal:Q5HSF8
STRING:Q5HSF8 GeneID:3232434 KEGG:cjr:CJE1807 PATRIC:20045436
BioCyc:CJEJ195099:GJC0-1841-MONOMER Uniprot:Q5HSF8
Length = 224
Score = 153 (58.9 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 1215 LEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPG 1274
LE L ++F + LL+ A H SF + +RLEFLGDAVLD ++ YL+ + K G
Sbjct: 7 LERSLTYEFKDKNLLIHALTHKSFKKSYN-NERLEFLGDAVLDLVVGEYLFHKFAKDAEG 65
Query: 1275 QLTDLRSMLVNNQAFANVA 1293
L+ LR+ LVN ++FA +A
Sbjct: 66 DLSKLRAALVNEKSFAKIA 84
Score = 115 (45.5 bits), Expect = 4.7e-06, Sum P(3) = 4.7e-06
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 1023 MLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSN 1082
+L+ ALT + ++ ++ ERLE LGDA L VG +LF EG+L++ R+ VN +
Sbjct: 20 LLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKS 79
Query: 1083 LLKLAARNNLQVYI 1096
K+A NL +I
Sbjct: 80 FAKIANSLNLGDFI 93
Score = 61 (26.5 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 1315 NYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGF 1356
N D++ S E G P +L D +E+ +GAI L++GF
Sbjct: 88 NLGDFIFM-SVAEENNGGREKPSILSDALEAIIGAIHLEAGF 128
Score = 44 (20.5 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 1523 RSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVE 1561
+++L E+ + P ++ + G HLK F ++++
Sbjct: 156 KTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLD 194
Score = 44 (20.5 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 1155 IADVVEALVGAFIDDSGFKAATAFLKWIGIQV 1186
++D +EA++GA ++GF+ F K I +++
Sbjct: 111 LSDALEAIIGAIHLEAGFE----FTKTIALRL 138
>UNIPROTKB|I3LAY7 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006259 "DNA
metabolic process" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:CU570961
Ensembl:ENSSSCT00000030082 Uniprot:I3LAY7
Length = 2028
Score = 134 (52.2 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 45/148 (30%), Positives = 69/148 (46%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQL + + A+ N +V L TG GKT IA +++Y P + +F+APT LV
Sbjct: 101 RDYQLNIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWF--PSGKV-VFMAPTKPLVT 157
Query: 120 QQAKVIEESIGFKVRTFCG--GSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIK 176
QQ + +G GS ++ + KEI D VL + PQ+++ L
Sbjct: 158 QQIEACYRVMGIPQSHMAEMTGSTQVFTR----KEIWDSKRVLFLTPQVMVNDLSRGACP 213
Query: 177 MELIALLIFDECHHAQVKSNHPYAKIMK 204
I L+ DE H A N+ Y + ++
Sbjct: 214 AAEIKCLVIDEAHRAL--GNYAYCQAVQ 239
Score = 118 (46.6 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 30/86 (34%), Positives = 46/86 (53%)
Query: 459 VGVNAG--LKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
VG +G +K ++ ++++FRSG N LV+T VGEEGLDI L+I FD ++
Sbjct: 492 VGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPI 551
Query: 517 SFIQSRGRA-RMPQSEYAFLVDSGNQ 541
+Q GR R Q ++ G +
Sbjct: 552 RLVQRMGRTGRKRQGRIVVILAEGRE 577
Score = 60 (26.2 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 28/129 (21%), Positives = 54/129 (41%)
Query: 1394 DLDLQFPSLKKGGKFLAEAKVT-GKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGY 1452
D+ F S+ K G F ++ K + K + S T S +E I Q K A
Sbjct: 772 DISSTF-SISKNGAFTSKKKSSFPKSINQDRSFLMTE-SDEEFAEIFKQTHIKPTKIASV 829
Query: 1453 VPKTKSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQGGSSCDIGSPSL 1512
K K+ + + K PK E + + D N +A +++F+ +++ + ++ +
Sbjct: 830 --KKKASKELKKGQPKKENKNVVIDSLDTNGNSATEDIFQVDLLNDKKASDIDEVAATGA 887
Query: 1513 TTGGLQNRS 1521
+ N+S
Sbjct: 888 INEYVANKS 896
Score = 50 (22.7 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 28/111 (25%), Positives = 46/111 (41%)
Query: 546 LIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGA-CISAGYGVSLLHRYCSKLP 604
L+ N S+ +D++ + + D EE++ K D G C + V+ +CS
Sbjct: 1160 LLDNNSEPQDQIIGDTVSWKHEDLRDVHEEKL-KNDEYGFDCSKYLFSVTFDLGFCSPDS 1218
Query: 605 HDEFF---NPKPKFYYFDDLGGTICHI--ILPANAPIHQIVGTPQSSMEAA 650
DE + K DDL G I I AN HQ P+ ++++
Sbjct: 1219 DDEILEHASDTNKNKVSDDLPGRHLDIKEISDANCVSHQ-AAIPRDQVDSS 1268
>FB|FBgn0038889 [details] [associations]
symbol:CG7922 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0003677 GO:GO:0006200 GO:GO:0016887 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10896
GeneTree:ENSGT00640000091530 RefSeq:NP_650971.2
ProteinModelPortal:Q9VDA0 SMR:Q9VDA0 IntAct:Q9VDA0
MINT:MINT-4080825 EnsemblMetazoa:FBtr0084109 GeneID:42543
KEGG:dme:Dmel_CG7922 UCSC:CG7922-RA FlyBase:FBgn0038889
InParanoid:Q9VDA0 OMA:HRAKGRY OrthoDB:EOG451C5Q PhylomeDB:Q9VDA0
GenomeRNAi:42543 NextBio:829338 ArrayExpress:Q9VDA0 Bgee:Q9VDA0
Uniprot:Q9VDA0
Length = 1489
Score = 156 (60.0 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 45/157 (28%), Positives = 79/157 (50%)
Query: 410 LRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLK-SM 468
LR + ++ F+ + IVF + + +L + + RC G G ++
Sbjct: 419 LRQV-LVQHFQANPDSRAIVFCEYRESVMLIHRLLLQHRPVLRPRCFVGQGSTVGASYAL 477
Query: 469 SRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVAS-FIQSRGRA-R 526
++ I+ FRSG N+LVAT +GEEGLD+ +++ FD+ T + FIQ GR R
Sbjct: 478 TQKQQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDICSTNPTRFIQRIGRTGR 537
Query: 527 MPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMD 563
E LV G RE ++K+ +D++N+++++
Sbjct: 538 KKNGEVVMLVTEG--REQQVLKDVLANKDQINKKLLN 572
Score = 108 (43.1 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 39/146 (26%), Positives = 63/146 (43%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQ + + A+ +N +V L TG GKT IA +++Y + R K +F+APT LV
Sbjct: 59 RSYQQTIVQSALFKNTLVVLPTGLGKTFIAAVVMY---NFYRWYPKGKIVFMAPTRPLVS 115
Query: 120 QQAKVIEESIGFKVRT---FCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIK 176
QQ ++ + F G R K W + + ++ +L
Sbjct: 116 QQIHASQKIMPFPSEDTVQLTGQLPRPKRAELWASKRVFFATPQVVHSDMLEADGECSFP 175
Query: 177 MELIALLIFDECHHAQVKSNHPYAKI 202
I L++ DE H A K + Y ++
Sbjct: 176 FGSIKLIVVDEAHRA--KGRYAYTQV 199
Score = 43 (20.2 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 657 KAIEDLHKLGALNDYLLPQEDNATEDEPM 685
KA E+LH++ + N + +D ED P+
Sbjct: 1243 KAAENLHRITSTNPTISVPKDE--EDSPI 1269
Score = 39 (18.8 bits), Expect = 8.8e-10, Sum P(4) = 8.8e-10
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 949 RKLEDSESHELEEYFDDLPPELCQLKII 976
RK +++ L +YF + PP Q I+
Sbjct: 623 RKQPVAQTGSLRKYFKESPPTESQQGIL 650
Score = 37 (18.1 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 1453 VPKTKSLESILKSSPKSEAR 1472
V +T SL K SP +E++
Sbjct: 627 VAQTGSLRKYFKESPPTESQ 646
Score = 37 (18.1 bits), Expect = 8.8e-10, Sum P(4) = 8.8e-10
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 979 SKDIGSSLSLLPSIMHRLENLLVAIE 1004
+ ++G +L L S+M+ E+ + A E
Sbjct: 935 ASELGDNLGRLNSLMNASESKIKATE 960
>TIGR_CMR|NSE_0918 [details] [associations]
symbol:NSE_0918 "ribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0004525 "ribonuclease
III activity" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_506782.1
ProteinModelPortal:Q2GCL4 STRING:Q2GCL4 GeneID:3931585
KEGG:nse:NSE_0918 PATRIC:22681823 ProtClustDB:CLSK2528151
BioCyc:NSEN222891:GHFU-920-MONOMER Uniprot:Q2GCL4
Length = 222
Score = 151 (58.2 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 34/98 (34%), Positives = 57/98 (58%)
Query: 1210 LDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYP 1269
+++ L+ LLG F ++ LL++A HPS + Y+RLEFLGDAVL+ +I S LY ++P
Sbjct: 1 MELEELQSLLGVYFKNKDLLVEALTHPSVEKCPS-YERLEFLGDAVLNLVIASMLYDLFP 59
Query: 1270 KLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIFDSN 1307
G+L+ +S L+ A +A + ++ S+
Sbjct: 60 GDPEGRLSHRQSALICKNTLAMLARQMNLGDYIRLSSS 97
Score = 114 (45.2 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 34/94 (36%), Positives = 49/94 (52%)
Query: 1004 ELKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHD 1063
EL+ LL F + ++L++ALT ++ S ERLE LGDA L + L+ L
Sbjct: 5 ELQSLLGVYFK-----NKDLLVEALTHPSVEKCPSYERLEFLGDAVLNLVIASMLYDLFP 59
Query: 1064 TVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIR 1097
EG L+ R+S + + L LA + NL YIR
Sbjct: 60 GDPEGRLSHRQSALICKNTLAMLARQMNLGDYIR 93
Score = 75 (31.5 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 1155 IADVVEALVGAFIDDSGFKAATAFLK--WIGIQVEFEA 1190
+ +V+EALVGA D+G + T F+K W G+ V+ ++
Sbjct: 110 LENVLEALVGAIFLDAGLETVTCFIKKRWYGLAVQSDS 147
Score = 69 (29.3 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 37/141 (26%), Positives = 63/141 (44%)
Query: 1315 NYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK 1374
N DY I SS+ E G L +++E+ +GAI LD+G T + I + ++
Sbjct: 87 NLGDY-IRLSSSEEAGGGRDKTSNLENVLEALVGAIFLDAGLETVTCF-IKKRWYGLAVQ 144
Query: 1375 FSNLQLNPIRELLELCNSYDLDLQ-FPSLKKGGK-----FLAEAKVTGKDKDVFISACAT 1428
+++ NP L EL + + + + + G F E +V GK + AT
Sbjct: 145 SDSIEPNPKSTLQELLQAKGMKPPIYNVINRSGPAHLPIFEIEIRVDGKKRR------AT 198
Query: 1429 NLSRKEAIRIASQQLFSKLKA 1449
S+K A++ + +LKA
Sbjct: 199 GKSKKLGEENAARMMLEELKA 219
Score = 63 (27.2 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 1523 RSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVE 1561
+S L EL A KPP ++ G +HL +F + V+
Sbjct: 153 KSTLQELLQAKGMKPPIYNVINRSGPAHLPIFEIEIRVD 191
>TIGR_CMR|CPS_4122 [details] [associations]
symbol:CPS_4122 "ribonuclease III" species:167879
"Colwellia psychrerythraea 34H" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:YP_270777.1 ProteinModelPortal:Q47WP5 STRING:Q47WP5
GeneID:3521712 KEGG:cps:CPS_4122 PATRIC:21471107
BioCyc:CPSY167879:GI48-4135-MONOMER Uniprot:Q47WP5
Length = 266
Score = 147 (56.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 38/93 (40%), Positives = 52/93 (55%)
Query: 1211 DMATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPK 1270
++A L LG++F LL+QA H S G +RLEFLGD++L ++I LY +PK
Sbjct: 7 NLARLTKKLGYEFNEPLLLVQALTHRSAK--GAHNERLEFLGDSILGFVIAEALYDKFPK 64
Query: 1271 LKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
G LT +RS LV A VA D + + LI
Sbjct: 65 HDEGDLTRMRSSLVKGVTLAEVARDFNLGECLI 97
Score = 103 (41.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 1016 GAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRS 1075
G E + +LL T + + ERLE LGD+ L + + L+ DEG+LTR RS
Sbjct: 16 GYEFNEPLLLVQALTHRSAKGAHNERLEFLGDSILGFVIAEALYDKFPKHDEGDLTRMRS 75
Query: 1076 NAVNNSNLLKLAARNNL 1092
+ V L ++A NL
Sbjct: 76 SLVKGVTLAEVARDFNL 92
Score = 79 (32.9 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 39/161 (24%), Positives = 70/161 (43%)
Query: 1328 EVKEGPRCPK-VLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDP---ILKFSNLQLNPI 1383
E+K G + +L D +E+ +GA+ LDS N+ ++LS+ + ++K N Q +P
Sbjct: 102 ELKSGGHHRESILEDAIEAIIGAVYLDS--NIECCKALILSWFERRLMVIKPGNEQKDPK 159
Query: 1384 RELLELCNSYDLDLQFPSL--KKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQ 1441
L E + L + G E V + + A SR++A + A+Q
Sbjct: 160 TRLQEFLQGRKIPLPTYEVIDTTGQSHNQEFTVRCQTSVISEVVIAKGTSRRKAEQEAAQ 219
Query: 1442 QLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPIN 1482
Q+ + ++ K + E +K P +A+L T N
Sbjct: 220 QILALIE------KEREQEKEVKIKPTKQAKLANPRHTKSN 254
Score = 61 (26.5 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1144 SKGHHWLHKKTIADVVEALVGAFIDDSGFKAATAF-LKW 1181
S GHH + + D +EA++GA DS + A L W
Sbjct: 105 SGGHH--RESILEDAIEAIIGAVYLDSNIECCKALILSW 141
Score = 48 (22.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 1516 GLQNRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFR 1557
G + + ++RL E PT++ G SH + FT R
Sbjct: 152 GNEQKDPKTRLQEFLQGRKIPLPTYEVIDTTGQSHNQEFTVR 193
Score = 38 (18.4 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 10/43 (23%), Positives = 14/43 (32%)
Query: 1502 GSSCDIGSPSLTTGGLQNRSARSRLYELCAANCWKPPTFDCCK 1544
G +G L +GG S E + +CCK
Sbjct: 93 GECLILGPGELKSGGHHRESILEDAIEAIIGAVYLDSNIECCK 135
>TIGR_CMR|DET_1025 [details] [associations]
symbol:DET_1025 "ribonuclease III" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
TIGRFAMs:TIGR02191 HOGENOM:HOG000246808 OMA:LTHKSCK
RefSeq:YP_181741.1 ProteinModelPortal:Q3Z7Q8 STRING:Q3Z7Q8
GeneID:3229696 KEGG:det:DET1025 PATRIC:21609095
ProtClustDB:CLSK837151 BioCyc:DETH243164:GJNF-1026-MONOMER
Uniprot:Q3Z7Q8
Length = 237
Score = 164 (62.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 39/98 (39%), Positives = 56/98 (57%)
Query: 1210 LDMATLEILLGHQFLHRGLLLQAFVHPSF-----NRLGGCYQRLEFLGDAVLDYLITSYL 1264
LD+ LE LG +F + LL QA +H S+ N L G +R+EFLGDAVL + L
Sbjct: 2 LDLTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRL 61
Query: 1265 YSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFL 1302
Y +P ++ G LT RS+LV ++ VA+ + K+L
Sbjct: 62 YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYL 99
Score = 49 (22.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 29/129 (22%), Positives = 59/129 (45%)
Query: 1328 EVKEGPRCPKVLGDLVESSLGAILLDSGFNLN--TVWKIMLSFLDPILKFS-NLQLNP-I 1383
+ +G P L E+ L AI LD G + ++++ + ++ + S N+ +
Sbjct: 106 DASKGRFKPANLAGAFEAVLAAIYLDKGIDATREVIFRLFKTEMERVQTLSSNIDYKSRL 165
Query: 1384 RELLE----LCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIA 1439
+EL++ L Y + + F + F+AE V +DK + A + S+KEA A
Sbjct: 166 QELVQAQFQLTPRYRI-IDFSGPEHNHLFIAE--VYTEDK---VLAEGSGRSKKEAETSA 219
Query: 1440 SQQLFSKLK 1448
+++ + +
Sbjct: 220 AKEALQQFE 228
Score = 43 (20.2 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 1519 NRSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEIEAPEKII 1569
N +SRL EL A P + G H LF I E+ +K++
Sbjct: 158 NIDYKSRLQELVQAQFQLTPRYRIIDFSGPEHNHLF----IAEVYTEDKVL 204
>UNIPROTKB|F1PJL5 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 EMBL:AAEX03003196
Ensembl:ENSCAFT00000030086 OMA:TSICAFD Uniprot:F1PJL5
Length = 627
Score = 141 (54.7 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 40/109 (36%), Positives = 57/109 (52%)
Query: 1199 SSKSFLPLSASLDMAT-LEILLGHQFLHRGLLLQAFVHPS--FNRLG-GCYQRLEFLGDA 1254
+ + + S L T E +G F H LL +AF + FN L G QR+EFLGD+
Sbjct: 346 TDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDS 405
Query: 1255 VLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
++ + T YL+ +P G LT LRS LVNN+ A VA + ++ I
Sbjct: 406 IMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 454
Score = 96 (38.9 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYI 1096
ERLE LGDA +++ HL+ L +++EG L R+ V N +L LA + L ++
Sbjct: 219 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 275
Score = 49 (22.3 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 23/75 (30%), Positives = 32/75 (42%)
Query: 1318 DYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK--F 1375
+Y IT T+ R K L DL+ES + A+ +D +L V M P LK
Sbjct: 451 EYAITNDKTKR-PVALRT-KTLADLLESFIAALYIDK--DLEYVHTFMNVCFFPRLKEFI 506
Query: 1376 SNLQLNPIRELLELC 1390
N N + L+ C
Sbjct: 507 LNQDWNDPKSQLQQC 521
>TIGR_CMR|BA_3987 [details] [associations]
symbol:BA_3987 "ribonuclease III" species:198094 "Bacillus
anthracis str. Ames" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
RefSeq:NP_846229.1 RefSeq:YP_020627.1 RefSeq:YP_029951.1
ProteinModelPortal:Q81WI8 DNASU:1087539
EnsemblBacteria:EBBACT00000008054 EnsemblBacteria:EBBACT00000016917
EnsemblBacteria:EBBACT00000023512 GeneID:1087539 GeneID:2816770
GeneID:2849362 KEGG:ban:BA_3987 KEGG:bar:GBAA_3987 KEGG:bat:BAS3700
HOGENOM:HOG000246808 OMA:LTHKSCK
BioCyc:BANT260799:GJAJ-3758-MONOMER
BioCyc:BANT261594:GJ7F-3875-MONOMER Uniprot:Q81WI8
Length = 245
Score = 136 (52.9 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 1219 LGHQFLHRGLLLQAFVHPSF-----NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKP 1273
+G F LL+QAF H S+ + +RLEFLGDAVL+ ++ YL+ YP +
Sbjct: 26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSE 85
Query: 1274 GQLTDLRSMLVNNQAFANVAVDQSF 1298
G+LT LR+ +V + A + SF
Sbjct: 86 GELTKLRAAIVCEPSLVRFANELSF 110
Score = 102 (41.0 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLA 1087
ERLE LGDA L+ V ++LF + T+ EGELT+ R+ V +L++ A
Sbjct: 58 ERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFA 105
Score = 87 (35.7 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 35/128 (27%), Positives = 65/128 (50%)
Query: 1328 EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK---FSNLQ--LNP 1382
E+ G P +L D+ E+ +GA+ LD G L TVW + + P + FS++ +
Sbjct: 121 EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGFLKEIVYPKINEGAFSHVMDYKSQ 178
Query: 1383 IRELLELCNSYDLDLQFPSLKKGGKFLAE--AKVTGKDKDVFISACATNLSRKEAIRIAS 1440
++EL++ S +++ Q +KG E ++VT + + + + S+KEA + A+
Sbjct: 179 LQELIQRDGSGNIEYQILQ-EKGPAHNREFVSRVTLNNVALGLGS---GKSKKEAEQQAA 234
Query: 1441 QQLFSKLK 1448
+ KLK
Sbjct: 235 AEALKKLK 242
>MGI|MGI:2442306 [details] [associations]
symbol:Fancm "Fanconi anemia, complementation group M"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=ISO] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=ISO] [GO:0071821 "FANCM-MHF complex" evidence=ISO]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 MGI:MGI:2442306
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 GO:GO:0003682
GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697 eggNOG:COG1948
HOGENOM:HOG000112498 HOVERGEN:HBG081520 KO:K10896 OMA:QMGMRSL
OrthoDB:EOG4C5CHK Gene3D:3.40.50.10130 EMBL:AK050306 EMBL:AK053715
EMBL:AK084697 EMBL:AK086395 EMBL:AK173211 IPI:IPI00471330
IPI:IPI00654953 IPI:IPI00654989 IPI:IPI00655127 RefSeq:NP_849243.2
UniGene:Mm.374847 ProteinModelPortal:Q8BGE5 SMR:Q8BGE5
STRING:Q8BGE5 PhosphoSite:Q8BGE5 PRIDE:Q8BGE5
Ensembl:ENSMUST00000058889 GeneID:104806 KEGG:mmu:104806
UCSC:uc007nrc.1 UCSC:uc007nrd.1 UCSC:uc007nrf.1 UCSC:uc011ymf.1
GeneTree:ENSGT00640000091530 InParanoid:Q8BGE5 NextBio:357300
Bgee:Q8BGE5 CleanEx:MM_FANCM Genevestigator:Q8BGE5
GermOnline:ENSMUSG00000055884 Uniprot:Q8BGE5
Length = 2021
Score = 145 (56.1 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 45/168 (26%), Positives = 78/168 (46%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQL++ + A+ N +V L TG GKT IA +++Y P + +F+APT LV
Sbjct: 80 RDYQLDISRSALFCNTLVCLPTGLGKTFIAAVVMYNFYRWF--PSGKV-VFMAPTKPLVT 136
Query: 120 QQAKVIEESIGFK---VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIK 176
QQ + +G + G ++ + W VL + PQ+++ L +
Sbjct: 137 QQMEACFHVMGIPQSHMAEMTGSTQAVNRKEIWSSR----RVLFLTPQVMVNDLTRGAVP 192
Query: 177 MELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224
+ L+ DE H A N+ Y +++++ K RI ++A+P
Sbjct: 193 ATHVKCLVVDEAHKAL--GNYAYCQVVRELVKYTTHF--RILALSATP 236
Score = 111 (44.1 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 466 KSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525
K ++ ++ +FR G N LV+T VGEEGLDI L+I FD ++ IQ GR
Sbjct: 503 KGFTQKEQLQVVRQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLIQRMGRT 562
Query: 526 -RMPQSEYAFLVDSGNQ 541
R Q ++ G +
Sbjct: 563 GRKRQGRIVVILAEGRE 579
Score = 46 (21.3 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 535 LVDSGNQRELDLIKNFSKEEDRMNREI 561
L SG + DL+K S E R N I
Sbjct: 1894 LFSSGQEETADLLKELSLVEQRKNAGI 1920
Score = 37 (18.1 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 796 DRSEFNSEFVPLGKDDYCESSSSTFYLLLPV 826
++S ++ F+PL ++ + + ++ FY P+
Sbjct: 932 EKSVSSNLFLPLEEELFTDRAAEQFYNCRPM 962
>FB|FBgn0026722 [details] [associations]
symbol:drosha "drosha" species:7227 "Drosophila melanogaster"
[GO:0031053 "primary miRNA processing" evidence=ISS;IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004525 "ribonuclease III
activity" evidence=ISS;NAS] [GO:0003725 "double-stranded RNA
binding" evidence=IEA;ISS] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030727
"germarium-derived female germ-line cyst formation" evidence=IMP]
[GO:0007294 "germarium-derived oocyte fate determination"
evidence=IMP] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 EMBL:AE013599 GO:GO:0007294 GO:GO:0022008
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 GO:GO:0016075
GO:GO:0030727 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 HSSP:O67082 OMA:RFHKSLD
CTD:29102 ChiTaRS:DROSHA EMBL:AF116572 EMBL:BT023503
RefSeq:NP_477436.1 UniGene:Dm.4482 SMR:Q7KNF1 IntAct:Q7KNF1
STRING:Q7KNF1 EnsemblMetazoa:FBtr0088850 GeneID:35747
KEGG:dme:Dmel_CG8730 UCSC:CG8730-RA FlyBase:FBgn0026722
InParanoid:Q7KNF1 OrthoDB:EOG4BRV1K GenomeRNAi:35747 NextBio:795024
Uniprot:Q7KNF1
Length = 1327
Score = 156 (60.0 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 56/167 (33%), Positives = 80/167 (47%)
Query: 1152 KKTIADVVEALVGAFIDDSGFKAAT-AFLKWIGIQVEFEASQVTNIC---------ISSK 1201
+ +A+ EAL+GA + D G K A F + Q E S N+ + +
Sbjct: 904 RHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLPEHPLQEQEPLGDR 963
Query: 1202 SFLPLSASL-DMATLEILLGHQFLHRGLLLQAFVHPS--FNRLG-GCYQRLEFLGDAVLD 1257
S + L ++ E +G +F H LL +AF S F L G QRLEFLGD VL
Sbjct: 964 SCIDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQ 1023
Query: 1258 YLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLIF 1304
+ + YLY +P+ G L+ LRS LVNN+ A V D K+ ++
Sbjct: 1024 LICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVY 1070
Score = 96 (38.9 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYI 1096
ERLE LGDA +++ HLF + ++EG L R+ V N +L LA + L+ ++
Sbjct: 833 ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFM 889
Score = 43 (20.2 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 1341 DLVESSLGAILLDSG 1355
DL+E+ LGA+ +D G
Sbjct: 1084 DLLEAFLGALYVDKG 1098
>SGD|S000001441 [details] [associations]
symbol:MPH1 "3'-5' DNA helicase involved in error-free bypass
of DNA lesions" species:4932 "Saccharomyces cerevisiae" [GO:0006281
"DNA repair" evidence=IEA] [GO:0060543 "negative regulation of
strand invasion" evidence=IMP;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=IGI]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IGI] [GO:0070336
"flap-structured DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000725 "recombinational repair"
evidence=IMP] InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271
Pfam:PF04851 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000001441 GO:GO:0005524 GO:GO:0005634 EMBL:BK006942
EMBL:X79743 EMBL:Z38062 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0036297 GO:GO:0000725 eggNOG:COG1111
GO:GO:0033567 GO:GO:0043138 GeneTree:ENSGT00640000091530 KO:K14635
OrthoDB:EOG4JHGPV PIR:S48436 RefSeq:NP_012267.1
ProteinModelPortal:P40562 SMR:P40562 DIP:DIP-5016N IntAct:P40562
MINT:MINT-493277 STRING:P40562 PaxDb:P40562 PeptideAtlas:P40562
EnsemblFungi:YIR002C GeneID:854818 KEGG:sce:YIR002C CYGD:YIR002c
HOGENOM:HOG000066122 OMA:KNREEIW NextBio:977660
Genevestigator:P40562 GermOnline:YIR002C GO:GO:0070336
GO:GO:0060543 Uniprot:P40562
Length = 993
Score = 132 (51.5 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 31/108 (28%), Positives = 55/108 (50%)
Query: 463 AGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSR 522
A + M++ K ++ F+ GE N+LV T +GEEGLDI L+I +D + IQ
Sbjct: 546 AQISGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRM 605
Query: 523 GRA-RMPQSEYAFLVDSGNQRELD-LIKNFSKEEDRMNREIMDRTSSD 568
GR R + L S + + ++++S + ++++ +D SD
Sbjct: 606 GRTGRKRDGKIVLLFSSNESYKFERAMEDYSTLQALISKQCIDYKKSD 653
Score = 110 (43.8 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 50/187 (26%), Positives = 81/187 (43%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQ + K++ +N + + TG GKT IA + + + R +K+ IF APT LV
Sbjct: 88 RDYQYTIVHKSLFQNTLCAIPTGMGKTFIASTV---MLNYFRWTKKAKIIFTAPTRPLVA 144
Query: 120 QQAKVIEESIGFKV-RTFCGGSKRLKSHCD-WEKEIDQYEVLVMIPQILLYCLYHRFIKM 177
QQ K G +T K K+ + W + V PQ++ L +
Sbjct: 145 QQIKACLGITGIPSDQTAILLDKSRKNREEIWANK----RVFFATPQVVENDLKRGVLDP 200
Query: 178 ELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLP 237
+ I L+ DE H A S Y ++K + R+ +TA+P AS +
Sbjct: 201 KDIVCLVIDEAHRATGSS--AYTNVVK--FIDRFNSSYRLLALTATP-----ASDLEGVQ 251
Query: 238 KSINSLE 244
+ +N+L+
Sbjct: 252 EVVNNLD 258
>UNIPROTKB|P0A7Y0 [details] [associations]
symbol:rnc "RNase III" species:83333 "Escherichia coli
K-12" [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA;IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA;IDA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0006396 EMBL:D64044 EMBL:U36841
GO:GO:0003725 GO:GO:0008033 GO:GO:0016075 GO:GO:0019843
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207 EMBL:M14658
EMBL:X02673 KO:K03685 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK EMBL:X02946 EMBL:M26415 PIR:F65034
RefSeq:NP_417062.1 RefSeq:YP_490795.1 ProteinModelPortal:P0A7Y0
SMR:P0A7Y0 DIP:DIP-48223N IntAct:P0A7Y0 MINT:MINT-1227120
PhosSite:P010446 PaxDb:P0A7Y0 PRIDE:P0A7Y0
EnsemblBacteria:EBESCT00000001804 EnsemblBacteria:EBESCT00000001805
EnsemblBacteria:EBESCT00000015272 GeneID:12931603 GeneID:947033
KEGG:ecj:Y75_p2520 KEGG:eco:b2567 PATRIC:32120533 EchoBASE:EB0850
EcoGene:EG10857 BioCyc:EcoCyc:EG10857-MONOMER
BioCyc:ECOL316407:JW2551-MONOMER BioCyc:MetaCyc:EG10857-MONOMER
Genevestigator:P0A7Y0 Uniprot:P0A7Y0
Length = 226
Score = 136 (52.9 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 1215 LEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPG 1274
L+ LG+ F H+ LL QA H S + +RLEFLGD++L Y+I + LY +P++ G
Sbjct: 9 LQRKLGYTFNHQELLQQALTHRSASSKHN--ERLEFLGDSILSYVIANALYHRFPRVDEG 66
Query: 1275 QLTDLRSMLVNNQAFANVA 1293
++ +R+ LV A +A
Sbjct: 67 DMSRMRATLVRGNTLAELA 85
Score = 115 (45.5 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 1022 EMLLKALTTEKCQERFSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNS 1081
E+L +ALT + + ERLE LGD+ L Y + L+ VDEG+++R R+ V +
Sbjct: 21 ELLQQALTHRSASSKHN-ERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGN 79
Query: 1082 NLLKLAARNNLQVYIRDQP 1100
L +LA L +R P
Sbjct: 80 TLAELAREFELGECLRLGP 98
Score = 81 (33.6 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 43/165 (26%), Positives = 73/165 (44%)
Query: 1295 DQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGP-RCPKVLGDLVESSLGAILLD 1353
D S + + N L+E + E+K G R +L D VE+ +G + LD
Sbjct: 67 DMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLD 126
Query: 1354 SGFNLNTVWKIMLSF----LDPILKFSNLQLNPIRELLELCNSYDLDLQ-FPSLKKGGK- 1407
S ++ TV K++L++ LD I + Q +P L E L L + ++ G+
Sbjct: 127 S--DIQTVEKLILNWYQTRLDEISP-GDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEA 183
Query: 1408 ----FLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLK 1448
F +V+G + V T SR++A + A++Q KL+
Sbjct: 184 HDQEFTIHCQVSGLSEPVV----GTGSSRRKAEQAAAEQALKKLE 224
Score = 47 (21.6 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 1155 IADVVEALVGAFIDDSGFKAATAF-LKW 1181
+AD VEAL+G DS + L W
Sbjct: 112 LADTVEALIGGVFLDSDIQTVEKLILNW 139
>UNIPROTKB|F1NQC9 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0010586
"miRNA metabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:AADN02007047
IPI:IPI00583351 Ensembl:ENSGALT00000021065 Uniprot:F1NQC9
Length = 1336
Score = 146 (56.5 bits), Expect = 6.2e-10, Sum P(3) = 6.2e-10
Identities = 54/168 (32%), Positives = 82/168 (48%)
Query: 1152 KKTIADVVEALVGA-FIDDSGFKAATAF---------LK--WIGIQVEFEASQVTNICIS 1199
+ +A+ EAL+GA +++ S +A F L+ W+ + Q +N +
Sbjct: 999 RHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDKDLRDVWLNYPLHPLQLQESN---T 1055
Query: 1200 SKSFLPLSASLDMAT-LEILLGHQFLHRGLLLQAFVHPS--FNRLG-GCYQRLEFLGDAV 1255
+ + S L T E +G F H LL +AF + FN L G QR+EFLGD++
Sbjct: 1056 DRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSI 1115
Query: 1256 LDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
+ + T YL+ +P G LT LRS LVNN+ A VA + +F I
Sbjct: 1116 MQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAI 1163
Score = 100 (40.3 bits), Expect = 6.2e-10, Sum P(3) = 6.2e-10
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYI 1096
ERLE LGDA +++ HL+ L T++EG L R+ V N +L LA + L ++
Sbjct: 928 ERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 984
Score = 47 (21.6 bits), Expect = 6.2e-10, Sum P(3) = 6.2e-10
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 1337 KVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK--FSNLQLNPIRELLELC 1390
K L DL+ES + A+ +D +L V M P LK N N + L+ C
Sbjct: 1177 KTLADLLESFIAALYIDK--DLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQC 1230
>UNIPROTKB|E2RNF7 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071821 "FANCM-MHF complex" evidence=IEA]
[GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA]
[GO:0031297 "replication fork processing" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0031297 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821
GO:GO:0043240 InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697
KO:K10896 Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530
EMBL:AAEX03005706 RefSeq:XP_537429.2 Ensembl:ENSCAFT00000022327
GeneID:480307 KEGG:cfa:480307 Uniprot:E2RNF7
Length = 2047
Score = 142 (55.0 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 46/166 (27%), Positives = 80/166 (48%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQL++ + ++ N +V L TG GKT IA +++Y P + +F+APT LV
Sbjct: 92 RDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVMYNFYRWF--PSGKV-VFMAPTKPLVT 148
Query: 120 QQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYE-VLVMIPQILLYCLYHRFIKME 178
QQ + +G + ++ KEI + + VL + PQ+++ L
Sbjct: 149 QQIEACYRVMGIPQSHMAEMTGTTQAFT--RKEIWRSKRVLFLTPQVMVNDLSRGACPAA 206
Query: 179 LIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224
I L+ DE H A N+ Y +++++ +K RI ++A+P
Sbjct: 207 EIKCLVIDEAHKAL--GNYAYCQVVRELFK--YTNHFRILALSATP 248
Score = 114 (45.2 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 459 VGVNAG--LKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
VG +G +K ++ ++++FRSG N LV+T VGEEGLDI L+I FD ++
Sbjct: 509 VGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPI 568
Query: 517 SFIQSRGRA-RMPQSEYAFLVDSGNQ 541
+Q GR R + ++ G +
Sbjct: 569 RLVQRMGRTGRKRKGRIVVILAEGRE 594
Score = 43 (20.2 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 18/67 (26%), Positives = 28/67 (41%)
Query: 535 LVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVS 594
L S + DL+K S E R N I T + C + Y + I+A ++
Sbjct: 1932 LFSSCQEETADLLKELSLVEQRKNVGIHIPTVVNRSKCEALQFYLSIPHISYITA---LN 1988
Query: 595 LLHRYCS 601
+ HR+ S
Sbjct: 1989 MCHRFSS 1995
Score = 37 (18.1 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 1458 SLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQ 1500
++E+I + ++ R DE + A ++NV + ++ E Q
Sbjct: 884 TVENISQVDRLNDKRASNTDEVAAAICAVNENVNQPHELMECQ 926
Score = 37 (18.1 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 18/46 (39%), Positives = 20/46 (43%)
Query: 1345 SSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELC 1390
SS LDSG+N SF D S+L L P E ELC
Sbjct: 932 SSFAGNFLDSGYN---------SFTDEKYSSSSLFL-PFEE--ELC 965
>UNIPROTKB|J9P777 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 GO:GO:0005524
GO:GO:0003677 GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004518 GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
OMA:QMGMRSL Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530
EMBL:AAEX03005706 Ensembl:ENSCAFT00000046644 Uniprot:J9P777
Length = 2048
Score = 142 (55.0 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 46/166 (27%), Positives = 80/166 (48%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQL++ + ++ N +V L TG GKT IA +++Y P + +F+APT LV
Sbjct: 92 RDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVMYNFYRWF--PSGKV-VFMAPTKPLVT 148
Query: 120 QQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYE-VLVMIPQILLYCLYHRFIKME 178
QQ + +G + ++ KEI + + VL + PQ+++ L
Sbjct: 149 QQIEACYRVMGIPQSHMAEMTGTTQAFT--RKEIWRSKRVLFLTPQVMVNDLSRGACPAA 206
Query: 179 LIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASP 224
I L+ DE H A N+ Y +++++ +K RI ++A+P
Sbjct: 207 EIKCLVIDEAHKAL--GNYAYCQVVRELFK--YTNHFRILALSATP 248
Score = 114 (45.2 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 459 VGVNAG--LKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
VG +G +K ++ ++++FRSG N LV+T VGEEGLDI L+I FD ++
Sbjct: 509 VGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPI 568
Query: 517 SFIQSRGRA-RMPQSEYAFLVDSGNQ 541
+Q GR R + ++ G +
Sbjct: 569 RLVQRMGRTGRKRKGRIVVILAEGRE 594
Score = 43 (20.2 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 18/67 (26%), Positives = 28/67 (41%)
Query: 535 LVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVS 594
L S + DL+K S E R N I T + C + Y + I+A ++
Sbjct: 1933 LFSSCQEETADLLKELSLVEQRKNVGIHIPTVVNRSKCEALQFYLSIPHISYITA---LN 1989
Query: 595 LLHRYCS 601
+ HR+ S
Sbjct: 1990 MCHRFSS 1996
Score = 37 (18.1 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 1458 SLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQ 1500
++E+I + ++ R DE + A ++NV + ++ E Q
Sbjct: 884 TVENISQVDRLNDKRASNTDEVAAAICAVNENVNQPHELMECQ 926
Score = 37 (18.1 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 18/46 (39%), Positives = 20/46 (43%)
Query: 1345 SSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELC 1390
SS LDSG+N SF D S+L L P E ELC
Sbjct: 932 SSFAGNFLDSGYN---------SFTDEKYSSSSLFL-PFEE--ELC 965
>DICTYBASE|DDB_G0274077 [details] [associations]
symbol:drnA-2 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 128 (50.1 bits), Expect = 8.2e-10, Sum P(5) = 8.2e-10
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 1246 QRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANV 1292
+RLEFLGDAVLD+++ YL+S Y + + G LT+ +S LVNN+ + +
Sbjct: 1102 ERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNENLSKI 1148
Score = 82 (33.9 bits), Expect = 8.2e-10, Sum P(5) = 8.2e-10
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIR 1097
+RLE LGD+ LK +LF D EG L+++R N L +L+ R +R
Sbjct: 926 QRLEFLGDSVLKITSSLYLFKKFDNEGEGLLSKKREFYTKNEYLTELSRRIGFDYILR 983
Score = 68 (29.0 bits), Expect = 8.2e-10, Sum P(5) = 8.2e-10
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 1151 HKKTIADVVEALVGAFIDDSGFKAATAFL-KWI 1182
H K AD++EA +GA + GFK + ++ KWI
Sbjct: 990 HSKPHADLIEAFIGAIYIECGFKDSFDWIIKWI 1022
Score = 55 (24.4 bits), Expect = 8.2e-10, Sum P(5) = 8.2e-10
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 298 EQYISALSRKLH--DHQSLRNTTKQLNRLHDSMKFCLEN 334
EQ + +S++L D+ + + + +N LHD++K + N
Sbjct: 344 EQKLDKISKQLDRLDNTTFSSIFESMNSLHDNLKILINN 382
Score = 48 (22.0 bits), Expect = 8.2e-10, Sum P(5) = 8.2e-10
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 1337 KVLGDLVESSLGAILLDSGFNL--NTVWKI 1364
K +GD +ES +G L GF N V+K+
Sbjct: 1170 KRMGDHIESYIGGFYLKFGFEKTKNRVYKL 1199
Score = 40 (19.1 bits), Expect = 0.00024, Sum P(5) = 0.00024
Identities = 26/85 (30%), Positives = 37/85 (43%)
Query: 250 KVYSVEDAEDLESFVS-SPVVRVYQYGPVIND-----TSSSYV-----TCSEQLAEIKRE 298
KV S + + F S P ++ YQ + D TSS Y+ E L KRE
Sbjct: 902 KVISERKPIEKDQFQSYRPFMKDYQRLEFLGDSVLKITSSLYLFKKFDNEGEGLLSKKRE 961
Query: 299 -----QYISALSRKLHDHQSLRNTT 318
+Y++ LSR++ LR TT
Sbjct: 962 FYTKNEYLTELSRRIGFDYILRITT 986
Score = 39 (18.8 bits), Expect = 2.6e-08, Sum P(5) = 2.6e-08
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 235 NLPKSINSLENLLDAK 250
+L KS+N L+ L +AK
Sbjct: 450 SLTKSVNLLDELANAK 465
>DICTYBASE|DDB_G0273051 [details] [associations]
symbol:drnA-1 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 128 (50.1 bits), Expect = 8.2e-10, Sum P(5) = 8.2e-10
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 1246 QRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANV 1292
+RLEFLGDAVLD+++ YL+S Y + + G LT+ +S LVNN+ + +
Sbjct: 1102 ERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNENLSKI 1148
Score = 82 (33.9 bits), Expect = 8.2e-10, Sum P(5) = 8.2e-10
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIR 1097
+RLE LGD+ LK +LF D EG L+++R N L +L+ R +R
Sbjct: 926 QRLEFLGDSVLKITSSLYLFKKFDNEGEGLLSKKREFYTKNEYLTELSRRIGFDYILR 983
Score = 68 (29.0 bits), Expect = 8.2e-10, Sum P(5) = 8.2e-10
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 1151 HKKTIADVVEALVGAFIDDSGFKAATAFL-KWI 1182
H K AD++EA +GA + GFK + ++ KWI
Sbjct: 990 HSKPHADLIEAFIGAIYIECGFKDSFDWIIKWI 1022
Score = 55 (24.4 bits), Expect = 8.2e-10, Sum P(5) = 8.2e-10
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 298 EQYISALSRKLH--DHQSLRNTTKQLNRLHDSMKFCLEN 334
EQ + +S++L D+ + + + +N LHD++K + N
Sbjct: 344 EQKLDKISKQLDRLDNTTFSSIFESMNSLHDNLKILINN 382
Score = 48 (22.0 bits), Expect = 8.2e-10, Sum P(5) = 8.2e-10
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 1337 KVLGDLVESSLGAILLDSGFNL--NTVWKI 1364
K +GD +ES +G L GF N V+K+
Sbjct: 1170 KRMGDHIESYIGGFYLKFGFEKTKNRVYKL 1199
Score = 40 (19.1 bits), Expect = 0.00024, Sum P(5) = 0.00024
Identities = 26/85 (30%), Positives = 37/85 (43%)
Query: 250 KVYSVEDAEDLESFVS-SPVVRVYQYGPVIND-----TSSSYV-----TCSEQLAEIKRE 298
KV S + + F S P ++ YQ + D TSS Y+ E L KRE
Sbjct: 902 KVISERKPIEKDQFQSYRPFMKDYQRLEFLGDSVLKITSSLYLFKKFDNEGEGLLSKKRE 961
Query: 299 -----QYISALSRKLHDHQSLRNTT 318
+Y++ LSR++ LR TT
Sbjct: 962 FYTKNEYLTELSRRIGFDYILRITT 986
Score = 39 (18.8 bits), Expect = 2.6e-08, Sum P(5) = 2.6e-08
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 235 NLPKSINSLENLLDAK 250
+L KS+N L+ L +AK
Sbjct: 450 SLTKSVNLLDELANAK 465
>UNIPROTKB|Q8IYD8 [details] [associations]
symbol:FANCM "Fanconi anemia group M protein" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071821 "FANCM-MHF
complex" evidence=IDA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IMP] [GO:0031297 "replication
fork processing" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00891
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 GO:GO:0003682
GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
Orphanet:84 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
PDB:4DRB PDBsum:4DRB InterPro:IPR010994 SUPFAM:SSF47781
EMBL:DQ140356 EMBL:AK093422 EMBL:BC036056 EMBL:AB046816
IPI:IPI00176581 IPI:IPI00217755 RefSeq:NP_065988.1
UniGene:Hs.509229 PDB:4DAY PDBsum:4DAY ProteinModelPortal:Q8IYD8
SMR:Q8IYD8 IntAct:Q8IYD8 STRING:Q8IYD8 PhosphoSite:Q8IYD8
DMDM:78099254 PaxDb:Q8IYD8 PRIDE:Q8IYD8 DNASU:57697
Ensembl:ENST00000267430 Ensembl:ENST00000556036 GeneID:57697
KEGG:hsa:57697 UCSC:uc001wwc.2 UCSC:uc001wwd.4 CTD:57697
GeneCards:GC14P045605 HGNC:HGNC:23168 MIM:609644 MIM:614087
neXtProt:NX_Q8IYD8 PharmGKB:PA134943156 eggNOG:COG1948
HOGENOM:HOG000112498 HOVERGEN:HBG081520 InParanoid:Q8IYD8 KO:K10896
OMA:QMGMRSL OrthoDB:EOG4C5CHK GenomeRNAi:57697 NextBio:64551
ArrayExpress:Q8IYD8 Bgee:Q8IYD8 CleanEx:HS_FANCM
Genevestigator:Q8IYD8 GermOnline:ENSG00000187790
Gene3D:3.40.50.10130 Uniprot:Q8IYD8
Length = 2048
Score = 142 (55.0 bits), Expect = 9.8e-10, Sum P(5) = 9.8e-10
Identities = 60/238 (25%), Positives = 101/238 (42%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQL + + A+ N +V L TG GKT IA +++Y P + +F+APT LV
Sbjct: 92 RDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWF--PSGKV-VFMAPTKPLVT 148
Query: 120 QQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIKME 178
QQ + + +G + + KEI VL + PQ+++ L
Sbjct: 149 QQIEACYQVMGIPQSHMAEMTG--STQASTRKEIWCSKRVLFLTPQVMVNDLSRGACPAA 206
Query: 179 LIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPK 238
I L+ DE H A N+ Y +++++ K RI ++A+P G A +
Sbjct: 207 EIKCLVIDEAHKAL--GNYAYCQVVRELVK--YTNHFRILALSATP--GSDIKAVQQV-- 258
Query: 239 SINSLENLLDAKV-YSVEDAEDLESFVSSPVVR--VYQYGPVINDTSSSYVTCSEQLA 293
+ NLL ++ ED+ D+ ++ V + G + +Y+ E A
Sbjct: 259 ----ITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFA 312
Score = 115 (45.5 bits), Expect = 9.8e-10, Sum P(5) = 9.8e-10
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 466 KSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525
K ++ ++++FR G N LV+T VGEEGLDI L+I FD ++ +Q GR
Sbjct: 518 KGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRT 577
Query: 526 -RMPQSEYAFLVDSGNQREL 544
R Q ++ G + +
Sbjct: 578 GRKRQGRIVIILSEGREERI 597
Score = 49 (22.3 bits), Expect = 9.8e-10, Sum P(5) = 9.8e-10
Identities = 27/120 (22%), Positives = 45/120 (37%)
Query: 546 LIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRYCSKLPH 605
L+ N S+ +D++ R+ S D EE++ + C + V+ +CS
Sbjct: 1183 LLDNNSELQDQITRDANSFKSRDQRGVQEEKVKNHEDIFDCSRDLFSVTFDLGFCSPDSD 1242
Query: 606 DEFF-NPKPKFYYFDDLGGTICHI--ILPANAPIHQIVGTPQSSMEAAKKDACLKAIEDL 662
DE + DDL G I I AN +Q + S + + ED+
Sbjct: 1243 DEILEHTSDSNRPLDDLYGRYLEIKEISDANYVSNQALIPRDHSKNFTSGTVIIPSNEDM 1302
Score = 44 (20.5 bits), Expect = 9.8e-10, Sum P(5) = 9.8e-10
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 420 RLQQHMKCIVFVNRIVTARALSYILQ---NLKFLAS 452
+L H++C+ R +A +S I Q N KF+ S
Sbjct: 411 KLYNHLECMFARTRSTSANGISAIQQGDKNKKFVYS 446
Score = 42 (19.8 bits), Expect = 9.8e-10, Sum P(5) = 9.8e-10
Identities = 19/92 (20%), Positives = 38/92 (41%)
Query: 1006 KHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLK---YAVGRHLFLLH 1062
K +L +V+ + +AL + FSLE+ + G +L ++V L
Sbjct: 1355 KEILKTPDSSKEKVNLQRFKEALNSTFDYSEFSLEKSKSSGPMYLHKSCHSVEDGQLLTS 1414
Query: 1063 DTVDEGELTRRRSNAVNNSNLLKLAARNNLQV 1094
+ ++ E+ RR+ + L + N +V
Sbjct: 1415 NESEDDEIFRRKVKRAKGNVLNSPEDQKNSEV 1446
Score = 41 (19.5 bits), Expect = 2.4e-09, Sum P(4) = 2.4e-09
Identities = 22/60 (36%), Positives = 26/60 (43%)
Query: 1345 SSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKK 1404
SSL +LDSG+N SF D SNL L P E L + + D SL K
Sbjct: 935 SSLAGNVLDSGYN---------SFNDEKSVSSNLFL-PFEEELYIVRTDDQFYNCHSLTK 984
Score = 38 (18.4 bits), Expect = 2.2e-09, Sum P(5) = 2.2e-09
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 806 PLGKDDYCESSSSTFYLLLPVI-FHKNSVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGP 864
PL K + S S +L K V+ + + L+S F S+++ S GP
Sbjct: 1340 PLSKSNTLNSFSKIRKEILKTPDSSKEKVNLQRFKEALNS-TFDYSEFSLEKSK--SSGP 1396
Query: 865 LQLHNGWSSESD 876
+ LH S D
Sbjct: 1397 MYLHKSCHSVED 1408
Score = 38 (18.4 bits), Expect = 4.7e-09, Sum P(4) = 4.7e-09
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 545 DLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSG 584
+++K ++++N + + F SE + K SSG
Sbjct: 1356 EILKTPDSSKEKVNLQRFKEALNSTFDYSEFSLEKSKSSG 1395
>UNIPROTKB|F1LQY5 [details] [associations]
symbol:F1LQY5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0006396 GO:GO:0003725 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 IPI:IPI00870720
Ensembl:ENSRNOT00000018032 ArrayExpress:F1LQY5 Uniprot:F1LQY5
Length = 1018
Score = 141 (54.7 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 40/109 (36%), Positives = 57/109 (52%)
Query: 1199 SSKSFLPLSASLDMAT-LEILLGHQFLHRGLLLQAFVHPS--FNRLG-GCYQRLEFLGDA 1254
+ + + S L T E +G F H LL +AF + FN L G QR+EFLGD+
Sbjct: 737 TDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDS 796
Query: 1255 VLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
++ + T YL+ +P G LT LRS LVNN+ A VA + ++ I
Sbjct: 797 IMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 845
Score = 96 (38.9 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYI 1096
ERLE LGDA +++ HL+ L +++EG L R+ V N +L LA + L ++
Sbjct: 610 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 666
Score = 49 (22.3 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 23/75 (30%), Positives = 32/75 (42%)
Query: 1318 DYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK--F 1375
+Y IT T+ R K L DL+ES + A+ +D +L V M P LK
Sbjct: 842 EYAITNDKTKR-PVALRT-KTLADLLESFIAALYIDK--DLEYVHTFMNVCFFPRLKEFI 897
Query: 1376 SNLQLNPIRELLELC 1390
N N + L+ C
Sbjct: 898 LNQDWNDPKSQLQQC 912
>MGI|MGI:1261425 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IDA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0010468 "regulation
of gene expression" evidence=IMP] [GO:0010586 "miRNA metabolic
process" evidence=IMP] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 MGI:MGI:1261425 GO:GO:0005730 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0042254 GO:GO:0003725 GO:GO:0010586
GO:GO:0031054 GO:GO:0004521 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 KO:K03685
HSSP:O67082 CTD:29102 HOGENOM:HOG000122291 OMA:SGKEKNY
OrthoDB:EOG4VQ9NG ChiTaRS:DROSHA EMBL:AK144147 EMBL:AK148640
EMBL:BC088999 IPI:IPI00336345 RefSeq:NP_001123621.1
RefSeq:NP_081075.3 UniGene:Mm.293142 ProteinModelPortal:Q5HZJ0
SMR:Q5HZJ0 STRING:Q5HZJ0 PhosphoSite:Q5HZJ0 PRIDE:Q5HZJ0
Ensembl:ENSMUST00000090292 Ensembl:ENSMUST00000169061 GeneID:14000
KEGG:mmu:14000 UCSC:uc007via.2 InParanoid:Q5HZJ0 NextBio:284892
Bgee:Q5HZJ0 Genevestigator:Q5HZJ0 Uniprot:Q5HZJ0
Length = 1373
Score = 141 (54.7 bits), Expect = 1.7e-09, Sum P(4) = 1.7e-09
Identities = 40/109 (36%), Positives = 57/109 (52%)
Query: 1199 SSKSFLPLSASLDMAT-LEILLGHQFLHRGLLLQAFVHPS--FNRLG-GCYQRLEFLGDA 1254
+ + + S L T E +G F H LL +AF + FN L G QR+EFLGD+
Sbjct: 1092 TDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDS 1151
Query: 1255 VLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
++ + T YL+ +P G LT LRS LVNN+ A VA + ++ I
Sbjct: 1152 IMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1200
Score = 96 (38.9 bits), Expect = 1.7e-09, Sum P(4) = 1.7e-09
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYI 1096
ERLE LGDA +++ HL+ L +++EG L R+ V N +L LA + L ++
Sbjct: 965 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1021
Score = 50 (22.7 bits), Expect = 1.7e-09, Sum P(4) = 1.7e-09
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 351 DETMRNELIEAEGNTIDDSLCRFASQASEVFAAI 384
DE + + E+E T DDS C +S SEVF I
Sbjct: 473 DEDLESSS-ESECETDDDSTCSSSSD-SEVFDVI 504
Score = 49 (22.3 bits), Expect = 1.7e-09, Sum P(4) = 1.7e-09
Identities = 23/75 (30%), Positives = 32/75 (42%)
Query: 1318 DYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK--F 1375
+Y IT T+ R K L DL+ES + A+ +D +L V M P LK
Sbjct: 1197 EYAITNDKTKR-PVALRT-KTLADLLESFIAALYIDK--DLEYVHTFMNVCFFPRLKEFI 1252
Query: 1376 SNLQLNPIRELLELC 1390
N N + L+ C
Sbjct: 1253 LNQDWNDPKSQLQQC 1267
>UNIPROTKB|F1SP38 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:CU633306
EMBL:FP325179 EMBL:FP326694 Ensembl:ENSSSCT00000018300
ArrayExpress:F1SP38 Uniprot:F1SP38
Length = 1328
Score = 141 (54.7 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 40/109 (36%), Positives = 57/109 (52%)
Query: 1199 SSKSFLPLSASLDMAT-LEILLGHQFLHRGLLLQAFVHPS--FNRLG-GCYQRLEFLGDA 1254
+ + + S L T E +G F H LL +AF + FN L G QR+EFLGD+
Sbjct: 1047 TDRQLIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDS 1106
Query: 1255 VLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
++ + T YL+ +P G LT LRS LVNN+ A VA + ++ I
Sbjct: 1107 IMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1155
Score = 96 (38.9 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYI 1096
ERLE LGDA +++ HL+ L +++EG L R+ V N +L LA + L ++
Sbjct: 920 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 976
Score = 49 (22.3 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 23/75 (30%), Positives = 32/75 (42%)
Query: 1318 DYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK--F 1375
+Y IT T+ R K L DL+ES + A+ +D +L V M P LK
Sbjct: 1152 EYAITNDKTKR-PVALRT-KTLADLLESFIAALYIDK--DLEYVHTFMNVCFFPRLKEFI 1207
Query: 1376 SNLQLNPIRELLELC 1390
N N + L+ C
Sbjct: 1208 LNQDWNDPKSQLQQC 1222
>UNIPROTKB|E1BGY0 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:DAAA02050706
IPI:IPI00718255 Ensembl:ENSBTAT00000023346 Uniprot:E1BGY0
Length = 1368
Score = 141 (54.7 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 40/109 (36%), Positives = 57/109 (52%)
Query: 1199 SSKSFLPLSASLDMAT-LEILLGHQFLHRGLLLQAFVHPS--FNRLG-GCYQRLEFLGDA 1254
+ + + S L T E +G F H LL +AF + FN L G QR+EFLGD+
Sbjct: 1087 TDRQLIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDS 1146
Query: 1255 VLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
++ + T YL+ +P G LT LRS LVNN+ A VA + ++ I
Sbjct: 1147 IMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1195
Score = 96 (38.9 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYI 1096
ERLE LGDA +++ HL+ L +++EG L R+ V N +L LA + L ++
Sbjct: 960 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1016
Score = 49 (22.3 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 23/75 (30%), Positives = 32/75 (42%)
Query: 1318 DYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK--F 1375
+Y IT T+ R K L DL+ES + A+ +D +L V M P LK
Sbjct: 1192 EYAITNDKTKR-PVALRT-KTLADLLESFIAALYIDK--DLEYVHTFMNVCFFPRLKEFI 1247
Query: 1376 SNLQLNPIRELLELC 1390
N N + L+ C
Sbjct: 1248 LNQDWNDPKSQLQQC 1262
>UNIPROTKB|E9PTR3 [details] [associations]
symbol:E9PTR3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 CTD:29102 IPI:IPI00559397
RefSeq:NP_001101125.2 RefSeq:XP_003749268.1 UniGene:Rn.41113
Ensembl:ENSRNOT00000048026 GeneID:310159 KEGG:rno:310159
ArrayExpress:E9PTR3 Uniprot:E9PTR3
Length = 1373
Score = 141 (54.7 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 40/109 (36%), Positives = 57/109 (52%)
Query: 1199 SSKSFLPLSASLDMAT-LEILLGHQFLHRGLLLQAFVHPS--FNRLG-GCYQRLEFLGDA 1254
+ + + S L T E +G F H LL +AF + FN L G QR+EFLGD+
Sbjct: 1092 TDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDS 1151
Query: 1255 VLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
++ + T YL+ +P G LT LRS LVNN+ A VA + ++ I
Sbjct: 1152 IMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1200
Score = 96 (38.9 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYI 1096
ERLE LGDA +++ HL+ L +++EG L R+ V N +L LA + L ++
Sbjct: 965 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1021
Score = 49 (22.3 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 23/75 (30%), Positives = 32/75 (42%)
Query: 1318 DYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK--F 1375
+Y IT T+ R K L DL+ES + A+ +D +L V M P LK
Sbjct: 1197 EYAITNDKTKR-PVALRT-KTLADLLESFIAALYIDK--DLEYVHTFMNVCFFPRLKEFI 1252
Query: 1376 SNLQLNPIRELLELC 1390
N N + L+ C
Sbjct: 1253 LNQDWNDPKSQLQQC 1267
>UNIPROTKB|Q9NRR4 [details] [associations]
symbol:DROSHA "Ribonuclease 3" species:9606 "Homo sapiens"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0010586 "miRNA metabolic process" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0010467 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0042254
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
BRENDA:3.1.26.3 PANTHER:PTHR11207 KO:K03685 EMBL:AF189011
EMBL:AC008768 EMBL:AC022417 EMBL:AC106802 EMBL:AJ242976
EMBL:AK001121 EMBL:BC041162 EMBL:BC054003 EMBL:AF116910
IPI:IPI00219990 IPI:IPI00300956 IPI:IPI00942044 RefSeq:NP_037367.3
UniGene:Hs.97997 PDB:2KHX PDBsum:2KHX ProteinModelPortal:Q9NRR4
SMR:Q9NRR4 DIP:DIP-33300N IntAct:Q9NRR4 MINT:MINT-1184869
STRING:Q9NRR4 PhosphoSite:Q9NRR4 DMDM:20139357 PaxDb:Q9NRR4
PRIDE:Q9NRR4 Ensembl:ENST00000344624 Ensembl:ENST00000511367
GeneID:29102 KEGG:hsa:29102 UCSC:uc003jhg.2 CTD:29102
GeneCards:GC05M031401 H-InvDB:HIX0004780 HGNC:HGNC:17904 MIM:608828
neXtProt:NX_Q9NRR4 PharmGKB:PA142671060 HOGENOM:HOG000122291
HOVERGEN:HBG023130 InParanoid:Q9NRR4 OMA:SGKEKNY OrthoDB:EOG4VQ9NG
ChiTaRS:DROSHA EvolutionaryTrace:Q9NRR4 GenomeRNAi:29102
NextBio:52141 ArrayExpress:Q9NRR4 Bgee:Q9NRR4 CleanEx:HS_RNASEN
Genevestigator:Q9NRR4 GermOnline:ENSG00000113360 Uniprot:Q9NRR4
Length = 1374
Score = 141 (54.7 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 40/109 (36%), Positives = 57/109 (52%)
Query: 1199 SSKSFLPLSASLDMAT-LEILLGHQFLHRGLLLQAFVHPS--FNRLG-GCYQRLEFLGDA 1254
+ + + S L T E +G F H LL +AF + FN L G QR+EFLGD+
Sbjct: 1093 TDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDS 1152
Query: 1255 VLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
++ + T YL+ +P G LT LRS LVNN+ A VA + ++ I
Sbjct: 1153 IMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1201
Score = 96 (38.9 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYI 1096
ERLE LGDA +++ HL+ L +++EG L R+ V N +L LA + L ++
Sbjct: 966 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022
Score = 49 (22.3 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 23/75 (30%), Positives = 32/75 (42%)
Query: 1318 DYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK--F 1375
+Y IT T+ R K L DL+ES + A+ +D +L V M P LK
Sbjct: 1198 EYAITNDKTKR-PVALRT-KTLADLLESFIAALYIDK--DLEYVHTFMNVCFFPRLKEFI 1253
Query: 1376 SNLQLNPIRELLELC 1390
N N + L+ C
Sbjct: 1254 LNQDWNDPKSQLQQC 1268
>UNIPROTKB|Q61XX9 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6238 "Caenorhabditis
briggsae" [GO:0004525 "ribonuclease III activity" evidence=ISS]
[GO:0019953 "sexual reproduction" evidence=ISS] [GO:0031053
"primary miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0030154
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0003725
GO:GO:0016075 GO:GO:0019953 GO:GO:0006364 EMBL:HE600906
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 KO:K03685 RefSeq:XP_002639240.1
HSSP:O67082 ProteinModelPortal:Q61XX9 EnsemblMetazoa:CBG03798
GeneID:8581234 KEGG:cbr:CBG03798 CTD:8581234 WormBase:CBG03798
HOGENOM:HOG000154167 OMA:FNIMGGE Uniprot:Q61XX9
Length = 1061
Score = 147 (56.8 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 40/99 (40%), Positives = 58/99 (58%)
Query: 1208 ASLDMATLEILLGHQFLHRGLLLQAFVHPS--FNRLG-GCYQRLEFLGDAVLDYLITSYL 1264
A D LE ++G +F + LL +AF + FN L G QRLE+LGD+VL +I+ YL
Sbjct: 807 ALTDFHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWLGDSVLQLIISDYL 866
Query: 1265 YSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
Y +P G ++ LR+ LV+NQ + V D F +F+I
Sbjct: 867 YRNFPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFVI 905
Score = 91 (37.1 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLA 1087
ERLE LGDA ++ HLF + + EG L R+ V N NL KLA
Sbjct: 669 ERLEYLGDAVVELIASHHLFFILNHHFEGGLATYRTALVQNRNLAKLA 716
Score = 44 (20.5 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 1341 DLVESSLGAILLDSG 1355
DLVE+ +GA+ +D G
Sbjct: 921 DLVEAFIGALYVDKG 935
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 143 (55.4 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 44/180 (24%), Positives = 79/180 (43%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V E ++KL++LI +L+ + K I+FV T + + I +N+ W
Sbjct: 377 LQIVDVCDE---NEKLMKLIKLLTDISAENETKTIIFVE---TKKRVDEITRNIS-RQGW 429
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
R + G S+ +L FR+G ++LVAT V GLD+ VI +D P
Sbjct: 430 RACAIHG------DKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPS 483
Query: 514 TVASFIQS---RGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAF 570
++ GR+ + Y S + DLI+ + +N ++M+ + +
Sbjct: 484 NSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQVLREANQTINPKLMNMAMNGGY 543
Score = 84 (34.6 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 40/139 (28%), Positives = 61/139 (43%)
Query: 81 TGCGKTHIAVLLIYELAHLIRKPQKS-----ICIFLAPTVALVQQ-QAKVIEESIGFKVR 134
TG GKT +A +L + H+ +P+ I + LAPT L QQ Q IE VR
Sbjct: 203 TGSGKT-LAYVLP-AVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVR 260
Query: 135 TFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192
C GG+ + + D E+ + E+++ P L+ L ++ L+ DE
Sbjct: 261 NTCIFGGAPKGQQARDLERGV---EIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRML 317
Query: 193 VKSNHPYA-KIMKDFYKPD 210
P KIM+ +PD
Sbjct: 318 DMGFEPQIRKIMQQI-RPD 335
>TIGR_CMR|CHY_1444 [details] [associations]
symbol:CHY_1444 "ribonuclease III" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004525
"ribonuclease III activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_360276.1 ProteinModelPortal:Q3AC58
STRING:Q3AC58 GeneID:3727428 KEGG:chy:CHY_1444 PATRIC:21276019
BioCyc:CHYD246194:GJCN-1443-MONOMER Uniprot:Q3AC58
Length = 235
Score = 151 (58.2 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 38/97 (39%), Positives = 56/97 (57%)
Query: 1211 DMATLEILLGHQFLHRGLLLQAFVHPSF---NRLGGCY--QRLEFLGDAVLDYLITSYLY 1265
++ +LE +LG F + +LL A HPS+ + G +RLEFLGDAVL+ I+ YL+
Sbjct: 5 NLISLEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLF 64
Query: 1266 SVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFL 1302
+P+ G LT LRS LV ++ +A + KFL
Sbjct: 65 RTFPQKSEGDLTKLRSRLVCAESLYELAFKINLDKFL 101
Score = 104 (41.7 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 33/102 (32%), Positives = 52/102 (50%)
Query: 997 ENLLVAIELKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSL-ERLEILGDAFLKYAVG 1055
ENL I L+ +L +F + + + + + E +E ERLE LGDA L+ +
Sbjct: 4 ENL---ISLEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFIS 60
Query: 1056 RHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIR 1097
+LF EG+LT+ RS V +L +LA + NL ++R
Sbjct: 61 DYLFRTFPQKSEGDLTKLRSRLVCAESLYELAFKINLDKFLR 102
Score = 56 (24.8 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 1155 IADVVEALVGAFIDDSGFKAATAFL 1179
+A+ VEA++GA D G +AA +F+
Sbjct: 119 LANAVEAVIGAVYFDCGIEAAFSFI 143
Score = 47 (21.6 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 31/117 (26%), Positives = 51/117 (43%)
Query: 1339 LGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRE---LLELCNSYDL 1395
L + VE+ +GA+ D G + + + LK NL+ P E L EL
Sbjct: 119 LANAVEAVIGAVYFDCG--IEAAFSFITRLYGEKLKPENLEQLPKDEKTTLQELLQKEKN 176
Query: 1396 D-LQFPSLKKGG---KFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSKLK 1448
+ L++ L + G + + A V DK + A S+KEA + A+++ LK
Sbjct: 177 NVLRYEILLEEGPPHQKIFTAGVIINDK---LIATGRGKSKKEAEQEAAKKALELLK 230
Score = 44 (20.5 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 1540 FDCCKEEGLSHLKLFTFRVIV 1560
++ EEG H K+FT VI+
Sbjct: 181 YEILLEEGPPHQKIFTAGVII 201
>UNIPROTKB|B2RTQ9 [details] [associations]
symbol:FANCM "FANCM protein" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781 UniGene:Hs.509229
HGNC:HGNC:23168 HOVERGEN:HBG081520 Gene3D:3.40.50.10130
EMBL:AL121809 EMBL:BC140776 EMBL:BC144511 IPI:IPI01014004
SMR:B2RTQ9 STRING:B2RTQ9 Ensembl:ENST00000542564 UCSC:uc010anf.3
Uniprot:B2RTQ9
Length = 2022
Score = 126 (49.4 bits), Expect = 3.3e-08, Sum P(5) = 3.3e-08
Identities = 42/146 (28%), Positives = 66/146 (45%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQL + + A+ N +V L TG GKT IA +++Y P + +F+APT LV
Sbjct: 92 RDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWF--PSGKV-VFMAPTKPLVT 148
Query: 120 QQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIKME 178
QQ + + +G + + KEI VL + PQ+++ L
Sbjct: 149 QQIEACYQVMGIPQSHMAEMTG--STQASTRKEIWCSKRVLFLTPQVMVNDLSRGACPAA 206
Query: 179 LIALLIFDECHHAQVKSNHPYAKIMK 204
I L+ DE H A N+ Y + ++
Sbjct: 207 EIKCLVIDEAHKAL--GNYAYCQAVQ 230
Score = 115 (45.5 bits), Expect = 3.3e-08, Sum P(5) = 3.3e-08
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 466 KSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA 525
K ++ ++++FR G N LV+T VGEEGLDI L+I FD ++ +Q GR
Sbjct: 492 KGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRT 551
Query: 526 -RMPQSEYAFLVDSGNQREL 544
R Q ++ G + +
Sbjct: 552 GRKRQGRIVIILSEGREERI 571
Score = 49 (22.3 bits), Expect = 3.3e-08, Sum P(5) = 3.3e-08
Identities = 27/120 (22%), Positives = 45/120 (37%)
Query: 546 LIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVSLLHRYCSKLPH 605
L+ N S+ +D++ R+ S D EE++ + C + V+ +CS
Sbjct: 1157 LLDNNSELQDQITRDANSFKSRDQRGVQEEKVKNHEDIFDCSRDLFSVTFDLGFCSPDSD 1216
Query: 606 DEFF-NPKPKFYYFDDLGGTICHI--ILPANAPIHQIVGTPQSSMEAAKKDACLKAIEDL 662
DE + DDL G I I AN +Q + S + + ED+
Sbjct: 1217 DEILEHTSDSNRPLDDLYGRYLEIKEISDANYVSNQALIPRDHSKNFTSGTVIIPSNEDM 1276
Score = 44 (20.5 bits), Expect = 3.3e-08, Sum P(5) = 3.3e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 420 RLQQHMKCIVFVNRIVTARALSYILQ---NLKFLAS 452
+L H++C+ R +A +S I Q N KF+ S
Sbjct: 385 KLYNHLECMFARTRSTSANGISAIQQGDKNKKFVYS 420
Score = 42 (19.8 bits), Expect = 3.3e-08, Sum P(5) = 3.3e-08
Identities = 19/92 (20%), Positives = 38/92 (41%)
Query: 1006 KHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLERLEILGDAFLK---YAVGRHLFLLH 1062
K +L +V+ + +AL + FSLE+ + G +L ++V L
Sbjct: 1329 KEILKTPDSSKEKVNLQRFKEALNSTFDYSEFSLEKSKSSGPMYLHKSCHSVEDGQLLTS 1388
Query: 1063 DTVDEGELTRRRSNAVNNSNLLKLAARNNLQV 1094
+ ++ E+ RR+ + L + N +V
Sbjct: 1389 NESEDDEIFRRKVKRAKGNVLNSPEDQKNSEV 1420
Score = 41 (19.5 bits), Expect = 9.2e-08, Sum P(4) = 9.2e-08
Identities = 22/60 (36%), Positives = 26/60 (43%)
Query: 1345 SSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKK 1404
SSL +LDSG+N SF D SNL L P E L + + D SL K
Sbjct: 909 SSLAGNVLDSGYN---------SFNDEKSVSSNLFL-PFEEELYIVRTDDQFYNCHSLTK 958
Score = 38 (18.4 bits), Expect = 7.9e-08, Sum P(5) = 7.9e-08
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 806 PLGKDDYCESSSSTFYLLLPVI-FHKNSVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGP 864
PL K + S S +L K V+ + + L+S F S+++ S GP
Sbjct: 1314 PLSKSNTLNSFSKIRKEILKTPDSSKEKVNLQRFKEALNS-TFDYSEFSLEKSK--SSGP 1370
Query: 865 LQLHNGWSSESD 876
+ LH S D
Sbjct: 1371 MYLHKSCHSVED 1382
Score = 38 (18.4 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 545 DLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSG 584
+++K ++++N + + F SE + K SSG
Sbjct: 1330 EILKTPDSSKEKVNLQRFKEALNSTFDYSEFSLEKSKSSG 1369
>ZFIN|ZDB-GENE-090929-1 [details] [associations]
symbol:fancm "Fanconi anemia, complementation group
M" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR006166 InterPro:IPR011545 InterPro:IPR020819
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SMART:SM00891 ZFIN:ZDB-GENE-090929-1 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697
HOVERGEN:HBG081520 KO:K10896 Gene3D:3.40.50.10130 EMBL:EF088195
IPI:IPI00882629 RefSeq:NP_001107132.1 UniGene:Dr.154581
ProteinModelPortal:A8QLH8 GeneID:100006685 KEGG:dre:100006685
NextBio:20787226 Uniprot:A8QLH8
Length = 1761
Score = 122 (48.0 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 37/124 (29%), Positives = 58/124 (46%)
Query: 464 GLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRG 523
G++ ++ ++ +FR G N LV+T VGEEGLDI L++ FD ++ +Q G
Sbjct: 475 GVRGFTQKEQLEVVWRFREGGFNTLVSTCVGEEGLDIGEVDLIVCFDAQKSPIRLVQRMG 534
Query: 524 RA-RMPQSEYAFLVDSGNQRELDLIKNFSKEEDR-MNREIMDRTSSDAFTCSEERIYKVD 581
R R Q ++ G RE + N S+ R +N+ IM S R+ D
Sbjct: 535 RTGRQRQGRIVVILAEG--RE-ERTYNQSQSNRRSINKSIMGNKHSFQMFSDSPRMLPAD 591
Query: 582 SSGA 585
+ A
Sbjct: 592 VTPA 595
Score = 118 (46.6 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 29/71 (40%), Positives = 41/71 (57%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R+YQL +C+ A+ +N +V L TG GKT IA +L+Y P I +F+APT LV
Sbjct: 78 REYQLRVCEAALLQNTLVCLPTGLGKTFIASVLMYNYYRWF--PAGKI-VFMAPTKPLVA 134
Query: 120 QQAKVIEESIG 130
QQ + +G
Sbjct: 135 QQIEACYRVMG 145
Score = 39 (18.8 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 1475 GYDETPINVVAADDNVFEKLKISEPQG-GSSC 1505
G E+P+NV + N+ G GSSC
Sbjct: 1110 GEQESPVNVTGSRSNLTGPEGEQAAGGSGSSC 1141
>ZFIN|ZDB-GENE-070209-23 [details] [associations]
symbol:rnasen "ribonuclease type III, nuclear"
species:7955 "Danio rerio" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 ZFIN:ZDB-GENE-070209-23
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 OMA:SGKEKNY
EMBL:BX571950 IPI:IPI00499713 Ensembl:ENSDART00000089017
ArrayExpress:F1QKS5 Bgee:F1QKS5 Uniprot:F1QKS5
Length = 1289
Score = 148 (57.2 bits), Expect = 4.7e-08, Sum P(5) = 4.7e-08
Identities = 52/166 (31%), Positives = 79/166 (47%)
Query: 1152 KKTIADVVEALVGAFIDDSGFKAA----------TAFLKWIGIQVEFEASQVTNICISSK 1201
+ +A+ EAL+GA + G + A T ++ + + QV ++ +
Sbjct: 957 RHAMANCFEALIGAVYLEGGLEEAKDLFGRLLFNTEDMREVWLNYPPHPLQVQEP-LTDR 1015
Query: 1202 SFLPLSASLDMAT-LEILLGHQFLHRGLLLQAFVHPS--FNRLG-GCYQRLEFLGDAVLD 1257
+ S L T E +G F H LL +AF + FN L G QR+EFLGD+++
Sbjct: 1016 QLIESSPVLQKLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQ 1075
Query: 1258 YLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
+ T YL+ +P G LT LRS LVNN+ A VA + +F I
Sbjct: 1076 LVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAI 1121
Score = 94 (38.1 bits), Expect = 4.7e-08, Sum P(5) = 4.7e-08
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYI 1096
ERLE LGDA +++ HL+ L +++EG L R+ V N +L LA + L ++
Sbjct: 886 ERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 942
Score = 47 (21.6 bits), Expect = 4.7e-08, Sum P(5) = 4.7e-08
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 1337 KVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK--FSNLQLNPIRELLELC 1390
K L DL+ES + A+ +D +L V M P LK N N + L+ C
Sbjct: 1135 KTLADLLESFIAALYIDK--DLEFVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQC 1188
Score = 37 (18.1 bits), Expect = 4.7e-08, Sum P(5) = 4.7e-08
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 5 ESTVEGSQPSGGGTKICAATS 25
ES+ E S GG C+++S
Sbjct: 398 ESSSESECESDGGGSTCSSSS 418
Score = 37 (18.1 bits), Expect = 4.7e-08, Sum P(5) = 4.7e-08
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 536 VDSGNQRELDLIKNFSKEEDRMNREI 561
V+S RE + I EEDR E+
Sbjct: 301 VNSSRSREAEEITIDRHEEDRGQEEL 326
Score = 37 (18.1 bits), Expect = 4.7e-08, Sum P(5) = 4.7e-08
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 977 GFSKDIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPE 1015
G D+ +LP + H + + L L+ F E
Sbjct: 771 GIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYMFKE 809
>UNIPROTKB|J9NY43 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 GO:GO:0005524
GO:GO:0003677 GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004518 GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:AAEX03005706
Ensembl:ENSCAFT00000048988 Uniprot:J9NY43
Length = 2022
Score = 123 (48.4 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
Identities = 41/146 (28%), Positives = 69/146 (47%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQL++ + ++ N +V L TG GKT IA +++Y P + +F+APT LV
Sbjct: 92 RDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVMYNFYRWF--PSGKV-VFMAPTKPLVT 148
Query: 120 QQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYE-VLVMIPQILLYCLYHRFIKME 178
QQ + +G + ++ KEI + + VL + PQ+++ L
Sbjct: 149 QQIEACYRVMGIPQSHMAEMTGTTQAFT--RKEIWRSKRVLFLTPQVMVNDLSRGACPAA 206
Query: 179 LIALLIFDECHHAQVKSNHPYAKIMK 204
I L+ DE H A N+ Y + ++
Sbjct: 207 EIKCLVIDEAHKAL--GNYAYCQAIQ 230
Score = 114 (45.2 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 459 VGVNAG--LKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
VG +G +K ++ ++++FRSG N LV+T VGEEGLDI L+I FD ++
Sbjct: 483 VGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPI 542
Query: 517 SFIQSRGRA-RMPQSEYAFLVDSGNQ 541
+Q GR R + ++ G +
Sbjct: 543 RLVQRMGRTGRKRKGRIVVILAEGRE 568
Score = 43 (20.2 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
Identities = 18/67 (26%), Positives = 28/67 (41%)
Query: 535 LVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYGVS 594
L S + DL+K S E R N I T + C + Y + I+A ++
Sbjct: 1907 LFSSCQEETADLLKELSLVEQRKNVGIHIPTVVNRSKCEALQFYLSIPHISYITA---LN 1963
Query: 595 LLHRYCS 601
+ HR+ S
Sbjct: 1964 MCHRFSS 1970
Score = 37 (18.1 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 1458 SLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQ 1500
++E+I + ++ R DE + A ++NV + ++ E Q
Sbjct: 858 TVENISQVDRLNDKRASNTDEVAAAICAVNENVNQPHELMECQ 900
Score = 37 (18.1 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 18/46 (39%), Positives = 20/46 (43%)
Query: 1345 SSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELC 1390
SS LDSG+N SF D S+L L P E ELC
Sbjct: 906 SSFAGNFLDSGYN---------SFTDEKYSSSSLFL-PFEE--ELC 939
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 117 (46.2 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 41/150 (27%), Positives = 70/150 (46%)
Query: 428 IVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNL 487
I+F + ++ ++ +L+NL F A + +N + R A L KF+ G ++
Sbjct: 362 IIFTSTCASSTKIAMMLRNLGFGA-------IPINGDMDQGKRLAS---LNKFKQGTKSI 411
Query: 488 LVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLI 547
LVAT V GLDI + LVI +D+P ++ GR A +SG R + ++
Sbjct: 412 LVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRT-------ARAGNSG--RAITIV 462
Query: 548 KNFSKEEDRMNREIMDRTSSDAFTCSEERI 577
+ E + E + + D+F C EE +
Sbjct: 463 TQYDVEMYQ-RIEFVLKKKLDSFPCQEETV 491
Score = 97 (39.2 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 43/137 (31%), Positives = 58/137 (42%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
PK+I R+ + K + II TG GKT A +I L L+ PQ C+ LAPT
Sbjct: 142 PKEIQRE-SIPWALKGRD--IIGLAQTGSGKT--AAFVIPVLQKLLEAPQGLFCLALAPT 196
Query: 115 VALVQQ---QAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY 171
L Q Q I +IG K GG + K+ V+V P +L+ L
Sbjct: 197 RELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKP---HVVVGSPGRVLHHLE 253
Query: 172 H-RFIKMELIALLIFDE 187
H + + I I DE
Sbjct: 254 HTKGFNLRSIKYFIMDE 270
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 111 (44.1 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 460 GVNAGLKSMSRNAMK--SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVAS 517
G+N + R + +I++KFR G++ +L+ T++ G+D + VI FD P T+AS
Sbjct: 464 GINVDVIHSERTQFQRDTIVKKFRMGKIWVLICTELMARGMDFKGVNFVINFDFPHTLAS 523
Query: 518 FIQS---RGRARMPQSEYAFLVDS 538
+I GRA P Y D+
Sbjct: 524 YIHRIGRTGRAGRPGVAYTLYTDA 547
Score = 104 (41.7 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 36/140 (25%), Positives = 68/140 (48%)
Query: 53 KDPKQIARKYQLELCKKAMEENIIVYLG-TGCGKT-HIAVLLIYELAHLIRKPQKSICIF 110
K+P I Q+++ ++E +V + TG GKT ++ ++ L ++ +S+ I
Sbjct: 220 KEPSPI----QMQVIPILLKEREVVAIAPTGSGKTASFSIPILQALYEPKKEGFRSVII- 274
Query: 111 LAPTVALVQQ---QAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL 167
APT L QQ +++ + F++ C SK L + E I Y++L+ P L+
Sbjct: 275 -APTRELAQQIYRNFRLLSKGKPFRI---CVLSKNLHNQSTNENLIKNYDILITTPLRLV 330
Query: 168 YCLYHRFIKMELIALLIFDE 187
Y + + + + L+FDE
Sbjct: 331 YLIKENLLSLNKVEYLVFDE 350
>WB|WBGene00009163 [details] [associations]
symbol:drsh-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0009792
GO:GO:0030154 GO:GO:0007052 GO:GO:0046872 Gene3D:3.30.160.20
GO:GO:0007506 GO:GO:0000910 GO:GO:0003725 GO:GO:0016075
GO:GO:0019953 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 EMBL:Z81070 HOGENOM:HOG000154167
EMBL:AF160248 PIR:T21420 RefSeq:NP_001122460.2 RefSeq:NP_492599.1
ProteinModelPortal:O01326 SMR:O01326 STRING:O01326 PaxDb:O01326
EnsemblMetazoa:F26E4.10a GeneID:172830 KEGG:cel:CELE_F26E4.10
UCSC:F26E4.10a CTD:172830 WormBase:F26E4.10a WormBase:F26E4.10b
InParanoid:O01326 OMA:RFHKSLD NextBio:877175 Uniprot:O01326
Length = 1086
Score = 139 (54.0 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 41/105 (39%), Positives = 60/105 (57%)
Query: 1202 SFLPLSASLDMATLEILLGHQFLHRGLLLQAFVH---PSFNRLGGCYQRLEFLGDAVLDY 1258
SF+ + S A LE LG QF + LL +AF P+ + G QRLE+LGD+VL
Sbjct: 824 SFITPTLSTFHA-LEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQL 882
Query: 1259 LITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
+++ +LY +P G ++ LR+ LV+NQ A V D F +F+I
Sbjct: 883 IVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVI 927
Score = 84 (34.6 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLA 1087
ERLE LGDA ++ V HL+ + EG L R+ V N NL LA
Sbjct: 691 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLA 738
Score = 46 (21.3 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 1316 YVDYMI-TPSSTREVKEGPRCPKVLGDLVESSLGAILLDSG 1355
+ +++I P T E+K K DLVE+ +GA+ +D G
Sbjct: 922 FTEFVIKAPYKTPELKL-----KDKADLVEAFIGALYVDRG 957
Score = 44 (20.5 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 35/188 (18%), Positives = 67/188 (35%)
Query: 156 YEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKP--DIMK 213
YE MI ++ IK + + + + +K+ +KI++DF + +K
Sbjct: 83 YETNYMIDPPVVSTHSAELIKSNRVVIKAEEAEKYMMIKAKSTTSKILQDFQTKILETVK 142
Query: 214 VPRIFGMTASPVVGKGASAQAN-LPKSINSLENLLDAKVYS-VEDAEDLESFVSSPVVRV 271
R ++ S + PK E+ + V D++D E+ S P R
Sbjct: 143 TKRRLQADVPYIIHPCHSMKGRKTPKQKGGDESFTASDVSDDSNDSQD-EASTSEPTNRQ 201
Query: 272 YQYGPVINDTSSSYVTCSE--QLAEIKREQYISALSRKLHD-HQSLRNTTKQLNRLHDSM 328
+ TC+ Q + KR + R++ + + N +H +
Sbjct: 202 APEADKTGEVKDEKQTCNRRNQQRKAKRLRNFEEKERQITLLKKGIDRKKTHPNGIHPDI 261
Query: 329 KFCLENLG 336
F + LG
Sbjct: 262 SFNEKGLG 269
>UNIPROTKB|O01326 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6239 "Caenorhabditis
elegans" [GO:0005634 "nucleus" evidence=IC] [GO:0031053 "primary
miRNA processing" evidence=IMP] [GO:0019953 "sexual reproduction"
evidence=IMP] [GO:0004525 "ribonuclease III activity" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0009792 GO:GO:0030154 GO:GO:0007052
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0000910
GO:GO:0003725 GO:GO:0016075 GO:GO:0019953 GO:GO:0006364
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 GeneTree:ENSGT00690000102147
EMBL:Z81070 HOGENOM:HOG000154167 EMBL:AF160248 PIR:T21420
RefSeq:NP_001122460.2 RefSeq:NP_492599.1 ProteinModelPortal:O01326
SMR:O01326 STRING:O01326 PaxDb:O01326 EnsemblMetazoa:F26E4.10a
GeneID:172830 KEGG:cel:CELE_F26E4.10 UCSC:F26E4.10a CTD:172830
WormBase:F26E4.10a WormBase:F26E4.10b InParanoid:O01326 OMA:RFHKSLD
NextBio:877175 Uniprot:O01326
Length = 1086
Score = 139 (54.0 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 41/105 (39%), Positives = 60/105 (57%)
Query: 1202 SFLPLSASLDMATLEILLGHQFLHRGLLLQAFVH---PSFNRLGGCYQRLEFLGDAVLDY 1258
SF+ + S A LE LG QF + LL +AF P+ + G QRLE+LGD+VL
Sbjct: 824 SFITPTLSTFHA-LEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQL 882
Query: 1259 LITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
+++ +LY +P G ++ LR+ LV+NQ A V D F +F+I
Sbjct: 883 IVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVI 927
Score = 84 (34.6 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 1040 ERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLA 1087
ERLE LGDA ++ V HL+ + EG L R+ V N NL LA
Sbjct: 691 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLA 738
Score = 46 (21.3 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 1316 YVDYMI-TPSSTREVKEGPRCPKVLGDLVESSLGAILLDSG 1355
+ +++I P T E+K K DLVE+ +GA+ +D G
Sbjct: 922 FTEFVIKAPYKTPELKL-----KDKADLVEAFIGALYVDRG 957
Score = 44 (20.5 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 35/188 (18%), Positives = 67/188 (35%)
Query: 156 YEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKP--DIMK 213
YE MI ++ IK + + + + +K+ +KI++DF + +K
Sbjct: 83 YETNYMIDPPVVSTHSAELIKSNRVVIKAEEAEKYMMIKAKSTTSKILQDFQTKILETVK 142
Query: 214 VPRIFGMTASPVVGKGASAQAN-LPKSINSLENLLDAKVYS-VEDAEDLESFVSSPVVRV 271
R ++ S + PK E+ + V D++D E+ S P R
Sbjct: 143 TKRRLQADVPYIIHPCHSMKGRKTPKQKGGDESFTASDVSDDSNDSQD-EASTSEPTNRQ 201
Query: 272 YQYGPVINDTSSSYVTCSE--QLAEIKREQYISALSRKLHD-HQSLRNTTKQLNRLHDSM 328
+ TC+ Q + KR + R++ + + N +H +
Sbjct: 202 APEADKTGEVKDEKQTCNRRNQQRKAKRLRNFEEKERQITLLKKGIDRKKTHPNGIHPDI 261
Query: 329 KFCLENLG 336
F + LG
Sbjct: 262 SFNEKGLG 269
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 124 (48.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 43/172 (25%), Positives = 77/172 (44%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V E S+K +LI ++ ++ K I+FV T R + + ++ W
Sbjct: 310 LQIVDVCME---SEKDHKLIQLMEEIMAEKENKTIIFVE---TKRRCDDLTRRMR-RDGW 362
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+ G S+ +L +FRSG+ +L+AT V GLD++ VI +D P
Sbjct: 363 PAMCIHG------DKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPN 416
Query: 514 TVASFIQSRGR-ARMPQ--SEYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ ++ GR AR + Y F ++ +LIK + +N ++M
Sbjct: 417 SSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 468
Score = 83 (34.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 37/138 (26%), Positives = 61/138 (44%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESIG--FKVR 134
TG GKT +A LL I + H + + IC+ LAPT L QQ +V ++ G +++
Sbjct: 136 TGSGKT-LAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADD-YGKCSRLK 193
Query: 135 TFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192
+ C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 194 STCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRML 250
Query: 193 VKSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 251 DMGFEPQIRKIVDQIRPD 268
>ZFIN|ZDB-GENE-061013-64 [details] [associations]
symbol:ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
28" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-061013-64 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:BC124668 IPI:IPI00805270 RefSeq:NP_001070800.1
UniGene:Dr.84136 ProteinModelPortal:Q08BL1 GeneID:768189
KEGG:dre:768189 InParanoid:Q08BL1 NextBio:20918504
ArrayExpress:Q08BL1 Uniprot:Q08BL1
Length = 558
Score = 107 (42.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 36/119 (30%), Positives = 54/119 (45%)
Query: 408 KLLRLIGILSTFRLQQHMK-CIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLK 466
K+L L L R +Q K +VF N T L Y L+ + VG + L+
Sbjct: 396 KILELHQALK--RAEQEQKGVLVFCNSASTVNWLGYSLEEMG----------VG-HMRLQ 442
Query: 467 SMSRNAMKS-ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR 524
AM+ + F+ G+ N+LV T + GLD Q L++ +D PE+ +I GR
Sbjct: 443 GEMPAAMREGVFRDFQRGKTNVLVCTDIASRGLDTQRVGLIVNYDFPESQTDYIHRAGR 501
Score = 102 (41.0 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 38/132 (28%), Positives = 63/132 (47%)
Query: 63 QLELCKKAME-ENIIVYLGTGCGKTHIAVL-LIYELAH-LIRKPQKSI-CIFLAPTVALV 118
QL+ K ++ NI+ TG GKT +L +I+ L L+ ++SI + + P+ L
Sbjct: 178 QLQTIPKILKGRNILCAAETGSGKTLTYLLPIIHRLQEDLLAGSERSIRAVVIVPSRELA 237
Query: 119 QQQ---AKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI 175
+Q A+ + E G V+ GG + + Q ++LV P LL L+ RFI
Sbjct: 238 EQVNSVARSVSERFGLVVKVVGGGRGVGTIKAAFAR--GQPDILVSTPGALLKALWKRFI 295
Query: 176 KMELIALLIFDE 187
+ + L+ DE
Sbjct: 296 SLSELYFLVIDE 307
>UNIPROTKB|Q9KPB2 [details] [associations]
symbol:rnc "Ribonuclease 3" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 123 (48.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 1212 MATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKL 1271
M L LG+ F LL A H S N G +RLEFLGD++L ++I LY +PK+
Sbjct: 5 MNKLTSKLGYTFKETELLNLALTHRSAN--GKHNERLEFLGDSILSFVIADELYRRFPKV 62
Query: 1272 KPGQLTDLRSMLVNNQAFANV 1292
G ++ +R+ LV A +
Sbjct: 63 NEGDMSRMRATLVRGNTLAEL 83
Score = 69 (29.3 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 45/163 (27%), Positives = 68/163 (41%)
Query: 1295 DQSFYKFLIFDSNVLSETINNYV--DYM-ITPSSTREVKEGP-RCPKVLGDLVESSLGAI 1350
D S + + N L+E + DY+ + P E+K G R +L D VE+ +GAI
Sbjct: 66 DMSRMRATLVRGNTLAELGREFDLGDYLKLGPG---ELKSGGFRRDSILADAVEAIIGAI 122
Query: 1351 LLDSGFNLNTVWKIMLSF----LDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLK--K 1404
LDS +L T I+L + L+ I K Q +P L E L ++ K
Sbjct: 123 YLDS--DLETARSIVLEWYHGRLEEI-KPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIK 179
Query: 1405 GG----KFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQL 1443
G +F +V G D V + + + A A +QL
Sbjct: 180 GEAHNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222
>TIGR_CMR|VC_2461 [details] [associations]
symbol:VC_2461 "ribonuclease III" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 123 (48.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 1212 MATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKL 1271
M L LG+ F LL A H S N G +RLEFLGD++L ++I LY +PK+
Sbjct: 5 MNKLTSKLGYTFKETELLNLALTHRSAN--GKHNERLEFLGDSILSFVIADELYRRFPKV 62
Query: 1272 KPGQLTDLRSMLVNNQAFANV 1292
G ++ +R+ LV A +
Sbjct: 63 NEGDMSRMRATLVRGNTLAEL 83
Score = 69 (29.3 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 45/163 (27%), Positives = 68/163 (41%)
Query: 1295 DQSFYKFLIFDSNVLSETINNYV--DYM-ITPSSTREVKEGP-RCPKVLGDLVESSLGAI 1350
D S + + N L+E + DY+ + P E+K G R +L D VE+ +GAI
Sbjct: 66 DMSRMRATLVRGNTLAELGREFDLGDYLKLGPG---ELKSGGFRRDSILADAVEAIIGAI 122
Query: 1351 LLDSGFNLNTVWKIMLSF----LDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLK--K 1404
LDS +L T I+L + L+ I K Q +P L E L ++ K
Sbjct: 123 YLDS--DLETARSIVLEWYHGRLEEI-KPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIK 179
Query: 1405 GG----KFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQL 1443
G +F +V G D V + + + A A +QL
Sbjct: 180 GEAHNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 124 (48.7 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 43/172 (25%), Positives = 77/172 (44%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V E S+K +LI ++ ++ K I+FV T R + + ++ W
Sbjct: 312 LQIVDVCME---SEKDHKLIQLMEEIMAEKENKTIIFVE---TKRRCDDLTRRMR-RDGW 364
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+ G S+ +L +FRSG+ +L+AT V GLD++ VI +D P
Sbjct: 365 PAMCIHG------DKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPN 418
Query: 514 TVASFIQSRGR-ARMPQ--SEYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ ++ GR AR + Y F ++ +LIK + +N ++M
Sbjct: 419 SSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 470
Score = 84 (34.6 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 37/138 (26%), Positives = 61/138 (44%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESIG--FKVR 134
TG GKT +A LL I + H + + IC+ LAPT L QQ +V ++ G +++
Sbjct: 138 TGSGKT-LAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADD-YGKCSRLK 195
Query: 135 TFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192
+ C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 196 STCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRML 252
Query: 193 VKSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 253 DMGFEPQIRKIVDQIRPD 270
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 124 (48.7 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 43/172 (25%), Positives = 77/172 (44%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V E S+K +LI ++ ++ K I+FV T R + + ++ W
Sbjct: 312 LQIVDVCME---SEKDHKLIQLMEEIMAEKENKTIIFVE---TKRRCDDLTRRMR-RDGW 364
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+ G S+ +L +FRSG+ +L+AT V GLD++ VI +D P
Sbjct: 365 PAMCIHG------DKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPN 418
Query: 514 TVASFIQSRGR-ARMPQ--SEYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ ++ GR AR + Y F ++ +LIK + +N ++M
Sbjct: 419 SSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 470
Score = 84 (34.6 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 37/138 (26%), Positives = 61/138 (44%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESIG--FKVR 134
TG GKT +A LL I + H + + IC+ LAPT L QQ +V ++ G +++
Sbjct: 138 TGSGKT-LAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADD-YGKCSRLK 195
Query: 135 TFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192
+ C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 196 STCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRML 252
Query: 193 VKSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 253 DMGFEPQIRKIVDQIRPD 270
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 124 (48.7 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 43/172 (25%), Positives = 77/172 (44%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V E S+K +LI ++ ++ K I+FV T R + + ++ W
Sbjct: 312 LQIVDVCME---SEKDHKLIQLMEEIMAEKENKTIIFVE---TKRRCDDLTRRMR-RDGW 364
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+ G S+ +L +FRSG+ +L+AT V GLD++ VI +D P
Sbjct: 365 PAMCIHG------DKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPN 418
Query: 514 TVASFIQSRGR-ARMPQ--SEYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ ++ GR AR + Y F ++ +LIK + +N ++M
Sbjct: 419 SSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 470
Score = 84 (34.6 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 37/138 (26%), Positives = 61/138 (44%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESIG--FKVR 134
TG GKT +A LL I + H + + IC+ LAPT L QQ +V ++ G +++
Sbjct: 138 TGSGKT-LAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADD-YGKCSRLK 195
Query: 135 TFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192
+ C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 196 STCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRML 252
Query: 193 VKSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 253 DMGFEPQIRKIVDQIRPD 270
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 124 (48.7 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 43/172 (25%), Positives = 77/172 (44%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V E S+K +LI ++ ++ K I+FV T R + + ++ W
Sbjct: 391 LQIVDVCME---SEKDHKLIQLMEEIMAEKENKTIIFVE---TKRRCDDLTRRMR-RDGW 443
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+ G S+ +L +FRSG+ +L+AT V GLD++ VI +D P
Sbjct: 444 PAMCIHG------DKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPN 497
Query: 514 TVASFIQSRGR-ARMPQ--SEYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ ++ GR AR + Y F ++ +LIK + +N ++M
Sbjct: 498 SSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 549
Score = 84 (34.6 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 37/138 (26%), Positives = 61/138 (44%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESIG--FKVR 134
TG GKT +A LL I + H + + IC+ LAPT L QQ +V ++ G +++
Sbjct: 217 TGSGKT-LAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADD-YGKCSRLK 274
Query: 135 TFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192
+ C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 275 STCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRML 331
Query: 193 VKSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 332 DMGFEPQIRKIVDQIRPD 349
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 124 (48.7 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 43/172 (25%), Positives = 77/172 (44%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V E S+K +LI ++ ++ K I+FV T R + + ++ W
Sbjct: 391 LQIVDVCME---SEKDHKLIQLMEEIMAEKENKTIIFVE---TKRRCDDLTRRMR-RDGW 443
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+ G S+ +L +FRSG+ +L+AT V GLD++ VI +D P
Sbjct: 444 PAMCIHG------DKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPN 497
Query: 514 TVASFIQSRGR-ARMPQ--SEYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ ++ GR AR + Y F ++ +LIK + +N ++M
Sbjct: 498 SSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 549
Score = 84 (34.6 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 37/138 (26%), Positives = 61/138 (44%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESIG--FKVR 134
TG GKT +A LL I + H + + IC+ LAPT L QQ +V ++ G +++
Sbjct: 217 TGSGKT-LAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADD-YGKCSRLK 274
Query: 135 TFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192
+ C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 275 STCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRML 331
Query: 193 VKSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 332 DMGFEPQIRKIVDQIRPD 349
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 117 (46.2 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 42/173 (24%), Positives = 79/173 (45%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V E ++K +LI ++ ++ K I+FV T + + + ++ W
Sbjct: 315 LQIVDVCME---NEKDNKLIQLMEEIMAEKENKTIIFVE---TKKRCDELTRRMR-RDGW 367
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+ G S+ +L +FRSG+ +L+AT V GLD++ VI +D P
Sbjct: 368 PAMCIHG------DKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPN 421
Query: 514 TVASFIQSRGR-ARMPQ--SEYAFLVDSGNQREL-DLIKNFSKEEDRMNREIM 562
+ ++ GR AR + Y F GN R+ DL++ + +N +++
Sbjct: 422 SSEDYVHRIGRTARSTNKGTAYTFFTP-GNLRQARDLVRVLEEARQAINPKLL 473
Score = 89 (36.4 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 44/170 (25%), Positives = 73/170 (42%)
Query: 49 QKTDKDPKQI-ARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLL--IYELAH--LIRKP 103
Q+ K+P I A+ + L L + M + TG GKT +A LL I + H + +
Sbjct: 112 QQNFKEPTAIQAQGFPLALSGRDM----VGIAQTGSGKT-LAYLLPAIVHINHQPYLERG 166
Query: 104 QKSICIFLAPTVALVQQQAKV-IEESIGFKVRTFC--GGSKRLKSHCDWEKEIDQYEVLV 160
IC+ LAPT L QQ +V + ++++ C GG+ + D E+ + E+ +
Sbjct: 167 DGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGV---EICI 223
Query: 161 MIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPD 210
P L+ L + L+ DE P + + D +PD
Sbjct: 224 ATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 273
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 124 (48.7 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 43/172 (25%), Positives = 77/172 (44%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V E S+K +LI ++ ++ K I+FV T R + + ++ W
Sbjct: 393 LQIVDVCME---SEKDHKLIQLMEEIMAEKENKTIIFVE---TKRRCDDLTRRMR-RDGW 445
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+ G S+ +L +FRSG+ +L+AT V GLD++ VI +D P
Sbjct: 446 PAMCIHG------DKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPN 499
Query: 514 TVASFIQSRGR-ARMPQ--SEYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ ++ GR AR + Y F ++ +LIK + +N ++M
Sbjct: 500 SSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 551
Score = 84 (34.6 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 37/138 (26%), Positives = 61/138 (44%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESIG--FKVR 134
TG GKT +A LL I + H + + IC+ LAPT L QQ +V ++ G +++
Sbjct: 219 TGSGKT-LAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADD-YGKCSRLK 276
Query: 135 TFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192
+ C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 277 STCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRML 333
Query: 193 VKSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 334 DMGFEPQIRKIVDQIRPD 351
Score = 45 (20.9 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 806 PLGKDDYCESSSST-FYLLLPVIFHKNSVDWKIIRRCLSSPVF 847
PL + + +T LLLP++ H N +++ C F
Sbjct: 695 PLMSQQFAQPPGATNMLLLLPLLLHVNETT-QVVVTCADLTTF 736
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 121 (47.7 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 43/172 (25%), Positives = 81/172 (47%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V + +KL+RL+ + + ++ K IVFV T R + + ++ W
Sbjct: 314 LQIVDVCHDVEKDEKLIRLMEEIMS---EKENKTIVFVE---TKRRCDELTRKMR-RDGW 366
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+G++ G KS +L +F+ G+ +L+AT V GLD++ VI +D P
Sbjct: 367 PA---MGIH-GDKSQQERGW--VLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 514 TVASFIQSRGR-ARMPQS--EYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ +I GR AR ++ Y F + ++ DLI + +N +++
Sbjct: 421 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Score = 83 (34.3 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 36/137 (26%), Positives = 59/137 (43%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESI-GFKVRT 135
TG GKT ++ LL I + H + + IC+ LAPT L QQ +V E ++++
Sbjct: 140 TGSGKT-LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKS 198
Query: 136 FC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQV 193
C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 199 TCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255
Query: 194 KSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 256 MGFEPQIRKIVDQIRPD 272
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 115 (45.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 39/155 (25%), Positives = 72/155 (46%)
Query: 411 RLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSR 470
+LI ++ ++ K IVFV T R + + ++ W +G++ G KS
Sbjct: 316 KLIRLMEEIMSEKENKTIVFVE---TKRRCDDLTRKMR-RDGWPA---MGIH-GDKSQQE 367
Query: 471 NAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARMPQ 529
+L +F+ G+ +L+AT V GLD++ VI +D P + +I GR AR +
Sbjct: 368 RDW--VLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTK 425
Query: 530 S--EYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ Y F + ++ DLI + +N +++
Sbjct: 426 TGTAYTFFTPNNIKQVNDLISVLREANQAINPKLL 460
Score = 88 (36.0 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 37/137 (27%), Positives = 60/137 (43%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEE-SIGFKVRT 135
TG GKT ++ LL I + H + + IC+ LAPT L QQ +V E S ++++
Sbjct: 128 TGSGKT-LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKS 186
Query: 136 FC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQV 193
C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 187 TCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLD 243
Query: 194 KSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 244 MGFEPQIRKIVDQIRPD 260
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 115 (45.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 39/155 (25%), Positives = 72/155 (46%)
Query: 411 RLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSR 470
+LI ++ ++ K IVFV T R + + ++ W +G++ G KS
Sbjct: 324 KLIRLMEEIMSEKENKTIVFVE---TKRRCDDLTRKMR-RDGWPA---MGIH-GDKSQQE 375
Query: 471 NAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARMPQ 529
+L +F+ G+ +L+AT V GLD++ VI +D P + +I GR AR +
Sbjct: 376 RDW--VLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTK 433
Query: 530 S--EYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ Y F + ++ DLI + +N +++
Sbjct: 434 TGTAYTFFTPNNIKQVNDLISVLREANQAINPKLL 468
Score = 88 (36.0 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 37/137 (27%), Positives = 60/137 (43%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEE-SIGFKVRT 135
TG GKT ++ LL I + H + + IC+ LAPT L QQ +V E S ++++
Sbjct: 136 TGSGKT-LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKS 194
Query: 136 FC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQV 193
C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 195 TCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLD 251
Query: 194 KSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 252 MGFEPQIRKIVDQIRPD 268
>UNIPROTKB|F1M2R2 [details] [associations]
symbol:F1M2R2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
IPI:IPI00951546 Ensembl:ENSRNOT00000066555 ArrayExpress:F1M2R2
Uniprot:F1M2R2
Length = 287
Score = 141 (54.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 40/109 (36%), Positives = 57/109 (52%)
Query: 1199 SSKSFLPLSASLDMAT-LEILLGHQFLHRGLLLQAFVHPS--FNRLG-GCYQRLEFLGDA 1254
+ + + S L T E +G F H LL +AF + FN L G QR+EFLGD+
Sbjct: 6 TDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDS 65
Query: 1255 VLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
++ + T YL+ +P G LT LRS LVNN+ A VA + ++ I
Sbjct: 66 IMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 114
Score = 49 (22.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 23/75 (30%), Positives = 32/75 (42%)
Query: 1318 DYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK--F 1375
+Y IT T+ R K L DL+ES + A+ +D +L V M P LK
Sbjct: 111 EYAITNDKTKR-PVALRT-KTLADLLESFIAALYIDK--DLEYVHTFMNVCFFPRLKEFI 166
Query: 1376 SNLQLNPIRELLELC 1390
N N + L+ C
Sbjct: 167 LNQDWNDPKSQLQQC 181
>RGD|1307626 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0004521 "endoribonuclease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010586 "miRNA metabolic process" evidence=ISO]
[GO:0031054 "pre-miRNA processing" evidence=ISO] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1307626 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207
HOGENOM:HOG000122291 HOVERGEN:HBG023130 OrthoDB:EOG4VQ9NG
UniGene:Rn.41113 IPI:IPI00870720 EMBL:AY373464
ProteinModelPortal:Q67B98 STRING:Q67B98 PRIDE:Q67B98
InParanoid:Q67B98 ArrayExpress:Q67B98 Genevestigator:Q67B98
Uniprot:Q67B98
Length = 288
Score = 141 (54.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 40/109 (36%), Positives = 57/109 (52%)
Query: 1199 SSKSFLPLSASLDMAT-LEILLGHQFLHRGLLLQAFVHPS--FNRLG-GCYQRLEFLGDA 1254
+ + + S L T E +G F H LL +AF + FN L G QR+EFLGD+
Sbjct: 7 TDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDS 66
Query: 1255 VLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQSFYKFLI 1303
++ + T YL+ +P G LT LRS LVNN+ A VA + ++ I
Sbjct: 67 IMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 115
Score = 49 (22.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 23/75 (30%), Positives = 32/75 (42%)
Query: 1318 DYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILK--F 1375
+Y IT T+ R K L DL+ES + A+ +D +L V M P LK
Sbjct: 112 EYAITNDKTKR-PVALRT-KTLADLLESFIAALYIDK--DLEYVHTFMNVCFFPRLKEFI 167
Query: 1376 SNLQLNPIRELLELC 1390
N N + L+ C
Sbjct: 168 LNQDWNDPKSQLQQC 182
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 123 (48.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 44/177 (24%), Positives = 81/177 (45%)
Query: 413 IGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNA 472
+ +L +Q + IVF+ T L+ + L+ A C ++ G M ++
Sbjct: 235 VELLKKILTEQAERSIVFLK---TRERLADLRAELE-KAQIPCAWIQG------EMPQDR 284
Query: 473 MKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSE 531
+ + +FR G++N+L+AT V G+D+ VI FDLP + ++ GR R +
Sbjct: 285 RNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKG 344
Query: 532 YAF-LVDSGNQRELDLIKNFSKEE--DRMNREIMDRTSSDAFTCSEERIYKVDSSGA 585
A LV++ +Q + ++ + KEE +R + + F ++ I K GA
Sbjct: 345 IAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGA 401
Score = 75 (31.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 37/132 (28%), Positives = 58/132 (43%)
Query: 63 QLELCKKAME-ENIIVYLGTGCGKTHIAVL--LIYELAHLIRKPQKSICIFLAPTVALVQ 119
Q E +A++ +++ TG GKT V+ L Y L RK + + L PT L
Sbjct: 30 QAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKAGPARILILTPTRELAM 89
Query: 120 Q---QAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIP-QILLYCLYHRFI 175
Q QA+ + ++ + T GG + + H D +++V P ++L Y RF
Sbjct: 90 QVAEQAQALAKNTRLNIFTITGGVQ-YQEHADILATTQ--DIVVATPGRLLEYIDAERF- 145
Query: 176 KMELIALLIFDE 187
I LI DE
Sbjct: 146 DCRAIEWLILDE 157
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 123 (48.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 44/177 (24%), Positives = 81/177 (45%)
Query: 413 IGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNA 472
+ +L +Q + IVF+ T L+ + L+ A C ++ G M ++
Sbjct: 235 VELLKKILTEQAERSIVFLK---TRERLADLRAELE-KAQIPCAWIQG------EMPQDR 284
Query: 473 MKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSE 531
+ + +FR G++N+L+AT V G+D+ VI FDLP + ++ GR R +
Sbjct: 285 RNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKG 344
Query: 532 YAF-LVDSGNQRELDLIKNFSKEE--DRMNREIMDRTSSDAFTCSEERIYKVDSSGA 585
A LV++ +Q + ++ + KEE +R + + F ++ I K GA
Sbjct: 345 IAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGA 401
Score = 75 (31.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 37/132 (28%), Positives = 58/132 (43%)
Query: 63 QLELCKKAME-ENIIVYLGTGCGKTHIAVL--LIYELAHLIRKPQKSICIFLAPTVALVQ 119
Q E +A++ +++ TG GKT V+ L Y L RK + + L PT L
Sbjct: 30 QAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKAGPARILILTPTRELAM 89
Query: 120 Q---QAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIP-QILLYCLYHRFI 175
Q QA+ + ++ + T GG + + H D +++V P ++L Y RF
Sbjct: 90 QVAEQAQALAKNTRLNIFTITGGVQ-YQEHADILATTQ--DIVVATPGRLLEYIDAERF- 145
Query: 176 KMELIALLIFDE 187
I LI DE
Sbjct: 146 DCRAIEWLILDE 157
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 121 (47.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 28/102 (27%), Positives = 52/102 (50%)
Query: 469 SRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RM 527
++N S+L+ FR+G+ N+L+AT V GLD++ VI +D P + +++ GR R
Sbjct: 526 TQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRC 585
Query: 528 PQ--SEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSS 567
Q + Y F ++ +LI + ++ ++D S
Sbjct: 586 QQLGTAYTFFTPDNAKQARELISVLEEAGQTPSQALLDLARS 627
Score = 86 (35.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 37/141 (26%), Positives = 64/141 (45%)
Query: 81 TGCGKTHIAVLLIYELAHLIRKP-----QKSICIFLAPTVALVQQQAKVIEESIGF---- 131
TG GKT +A +L + H+ +P + I + LAPT L QQ V+ + G
Sbjct: 283 TGSGKT-LAYMLP-AIVHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRD-YGHLCKP 339
Query: 132 KVRTFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECH 189
++R C GGS ++ D ++ + EV++ P L+ L +R ++ L+ DE
Sbjct: 340 EIRHTCIFGGSSKVPQARDLDRGV---EVIIATPGRLIDFLENRNTNLQRCTYLVLDEAD 396
Query: 190 HAQVKSNHPYAKIMKDFYKPD 210
P + + + +PD
Sbjct: 397 RMLDMGFEPQIRKIIEQIRPD 417
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 124 (48.7 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 43/172 (25%), Positives = 77/172 (44%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V E S+K +LI ++ ++ K I+FV T R + + ++ W
Sbjct: 393 LQIVDVCME---SEKDHKLIQLMEEIMAEKENKTIIFVE---TKRRCDDLTRRMR-RDGW 445
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+ G S+ +L +FRSG+ +L+AT V GLD++ VI +D P
Sbjct: 446 PAMCIHG------DKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPN 499
Query: 514 TVASFIQSRGR-ARMPQ--SEYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ ++ GR AR + Y F ++ +LIK + +N ++M
Sbjct: 500 SSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 551
Score = 84 (34.6 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 37/138 (26%), Positives = 61/138 (44%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESIG--FKVR 134
TG GKT +A LL I + H + + IC+ LAPT L QQ +V ++ G +++
Sbjct: 219 TGSGKT-LAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADD-YGKCSRLK 276
Query: 135 TFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192
+ C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 277 STCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRML 333
Query: 193 VKSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 334 DMGFEPQIRKIVDQIRPD 351
Score = 43 (20.2 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 806 PLGKDDYCESSSST-FYLLLPVIFHKNSVDWKIIRRC 841
PL + + +T LLLP++ H N +++ C
Sbjct: 695 PLMSQQFAQPPGATNMLLLLPLLLHVNETT-QVVVTC 730
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 119 (46.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 43/172 (25%), Positives = 81/172 (47%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V + +KL+RL+ + + ++ K IVFV T R + + ++ W
Sbjct: 314 LQIVDVCHDVEKDEKLIRLMEEIMS---EKENKTIVFVE---TKRRCDELTRKMR-RDGW 366
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+G++ G KS +L +F+ G+ +L+AT V GLD++ VI +D P
Sbjct: 367 PA---MGIH-GDKSQQERDW--VLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 514 TVASFIQSRGR-ARMPQS--EYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ +I GR AR ++ Y F + ++ DLI + +N +++
Sbjct: 421 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Score = 83 (34.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 36/137 (26%), Positives = 59/137 (43%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESI-GFKVRT 135
TG GKT ++ LL I + H + + IC+ LAPT L QQ +V E ++++
Sbjct: 140 TGSGKT-LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKS 198
Query: 136 FC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQV 193
C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 199 TCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255
Query: 194 KSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 256 MGFEPQIRKIVDQIRPD 272
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 119 (46.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 43/172 (25%), Positives = 81/172 (47%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V + +KL+RL+ + + ++ K IVFV T R + + ++ W
Sbjct: 314 LQIVDVCHDVEKDEKLIRLMEEIMS---EKENKTIVFVE---TKRRCDELTRKMR-RDGW 366
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+G++ G KS +L +F+ G+ +L+AT V GLD++ VI +D P
Sbjct: 367 PA---MGIH-GDKSQQERDW--VLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 514 TVASFIQSRGR-ARMPQS--EYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ +I GR AR ++ Y F + ++ DLI + +N +++
Sbjct: 421 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Score = 83 (34.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 36/137 (26%), Positives = 59/137 (43%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESI-GFKVRT 135
TG GKT ++ LL I + H + + IC+ LAPT L QQ +V E ++++
Sbjct: 140 TGSGKT-LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKS 198
Query: 136 FC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQV 193
C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 199 TCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255
Query: 194 KSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 256 MGFEPQIRKIVDQIRPD 272
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 119 (46.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 43/172 (25%), Positives = 81/172 (47%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V + +KL+RL+ + + ++ K IVFV T R + + ++ W
Sbjct: 314 LQIVDVCHDVEKDEKLIRLMEEIMS---EKENKTIVFVE---TKRRCDELTRKMR-RDGW 366
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+G++ G KS +L +F+ G+ +L+AT V GLD++ VI +D P
Sbjct: 367 PA---MGIH-GDKSQQERDW--VLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 514 TVASFIQSRGR-ARMPQS--EYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ +I GR AR ++ Y F + ++ DLI + +N +++
Sbjct: 421 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Score = 83 (34.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 36/137 (26%), Positives = 59/137 (43%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESI-GFKVRT 135
TG GKT ++ LL I + H + + IC+ LAPT L QQ +V E ++++
Sbjct: 140 TGSGKT-LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKS 198
Query: 136 FC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQV 193
C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 199 TCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255
Query: 194 KSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 256 MGFEPQIRKIVDQIRPD 272
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 119 (46.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 43/172 (25%), Positives = 81/172 (47%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V + +KL+RL+ + + ++ K IVFV T R + + ++ W
Sbjct: 314 LQIVDVCHDVEKDEKLIRLMEEIMS---EKENKTIVFVE---TKRRCDELTRKMR-RDGW 366
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+G++ G KS +L +F+ G+ +L+AT V GLD++ VI +D P
Sbjct: 367 PA---MGIH-GDKSQQERDW--VLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 514 TVASFIQSRGR-ARMPQS--EYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ +I GR AR ++ Y F + ++ DLI + +N +++
Sbjct: 421 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Score = 83 (34.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 36/137 (26%), Positives = 59/137 (43%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESI-GFKVRT 135
TG GKT ++ LL I + H + + IC+ LAPT L QQ +V E ++++
Sbjct: 140 TGSGKT-LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKS 198
Query: 136 FC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQV 193
C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 199 TCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255
Query: 194 KSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 256 MGFEPQIRKIVDQIRPD 272
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 119 (46.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 43/172 (25%), Positives = 81/172 (47%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V + +KL+RL+ + + ++ K IVFV T R + + ++ W
Sbjct: 314 LQIVDVCHDVEKDEKLIRLMEEIMS---EKENKTIVFVE---TKRRCDELTRKMR-RDGW 366
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+G++ G KS +L +F+ G+ +L+AT V GLD++ VI +D P
Sbjct: 367 PA---MGIH-GDKSQQERDW--VLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 514 TVASFIQSRGR-ARMPQS--EYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ +I GR AR ++ Y F + ++ DLI + +N +++
Sbjct: 421 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Score = 83 (34.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 36/137 (26%), Positives = 59/137 (43%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESI-GFKVRT 135
TG GKT ++ LL I + H + + IC+ LAPT L QQ +V E ++++
Sbjct: 140 TGSGKT-LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKS 198
Query: 136 FC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQV 193
C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 199 TCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255
Query: 194 KSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 256 MGFEPQIRKIVDQIRPD 272
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 119 (46.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 43/172 (25%), Positives = 81/172 (47%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V + +KL+RL+ + + ++ K IVFV T R + + ++ W
Sbjct: 314 LQIVDVCHDVEKDEKLIRLMEEIMS---EKENKTIVFVE---TKRRCDELTRKMR-RDGW 366
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+G++ G KS +L +F+ G+ +L+AT V GLD++ VI +D P
Sbjct: 367 PA---MGIH-GDKSQQERDW--VLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 514 TVASFIQSRGR-ARMPQS--EYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ +I GR AR ++ Y F + ++ DLI + +N +++
Sbjct: 421 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Score = 83 (34.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 36/137 (26%), Positives = 59/137 (43%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESI-GFKVRT 135
TG GKT ++ LL I + H + + IC+ LAPT L QQ +V E ++++
Sbjct: 140 TGSGKT-LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKS 198
Query: 136 FC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQV 193
C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 199 TCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255
Query: 194 KSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 256 MGFEPQIRKIVDQIRPD 272
>TIGR_CMR|BA_2109 [details] [associations]
symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
ProteinModelPortal:Q81RE0 DNASU:1085806
EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
Length = 389
Score = 108 (43.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 469 SRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RM 527
S+ ++ + FR G+L +L+AT + G+DI VI +LP+TV +I GR RM
Sbjct: 269 SKQEREATMRAFRGGKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRM 328
Query: 528 -PQSEYAFLVDSGNQREL 544
+ LV +R+L
Sbjct: 329 GKEGTVVSLVTPQEERKL 346
Score = 88 (36.0 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 33/120 (27%), Positives = 62/120 (51%)
Query: 73 ENIIVYLGTGCGKTHIAVL-LIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF 131
+++I TG GKT +L L++++ +++PQ + LAPT LV Q + EE F
Sbjct: 36 QDVIAESPTGTGKTLAYLLPLLHKINPEVKQPQ---VVVLAPTRELVMQ---IHEEVQKF 89
Query: 132 KVRTFCGGSKRLKSHCDWEKEIDQYE----VLVMIPQILLYCLYHRFIKMELIALLIFDE 187
T G+ L D ++++++ + V+V P +L + + +KM + ++FDE
Sbjct: 90 TAGTEISGAS-LIGGADIKRQVEKLKKHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDE 148
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 119 (46.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 43/172 (25%), Positives = 81/172 (47%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V + +KL+RL+ + + ++ K IVFV T R + + ++ W
Sbjct: 371 LQIVDVCHDVEKDEKLIRLMEEIMS---EKENKTIVFVE---TKRRCDELTRKMR-RDGW 423
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+G++ G KS +L +F+ G+ +L+AT V GLD++ VI +D P
Sbjct: 424 PA---MGIH-GDKSQQERDW--VLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 477
Query: 514 TVASFIQSRGR-ARMPQS--EYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ +I GR AR ++ Y F + ++ DLI + +N +++
Sbjct: 478 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 529
Score = 83 (34.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 36/137 (26%), Positives = 59/137 (43%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESI-GFKVRT 135
TG GKT ++ LL I + H + + IC+ LAPT L QQ +V E ++++
Sbjct: 197 TGSGKT-LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKS 255
Query: 136 FC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQV 193
C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 256 TCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 312
Query: 194 KSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 313 MGFEPQIRKIVDQIRPD 329
>TIGR_CMR|CBU_1503 [details] [associations]
symbol:CBU_1503 "ribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 EMBL:L27436
KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 PIR:S60767 RefSeq:NP_820486.1
ProteinModelPortal:P51837 GeneID:1209413 KEGG:cbu:CBU_1503
PATRIC:17931771 BioCyc:CBUR227377:GJ7S-1488-MONOMER Uniprot:P51837
Length = 233
Score = 128 (50.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 1219 LGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTD 1278
LGHQF + LL A H S +RLEFLGD+VL ++I S LY P+ + G L+
Sbjct: 11 LGHQFNNLELLKIALTHCSSGADNN--ERLEFLGDSVLGFIIASELYQRRPQAREGDLSR 68
Query: 1279 LRSMLVNNQAFANVAVDQSFYKFL 1302
+R+ +VN A ++ ++L
Sbjct: 69 MRASMVNGDELAQMSTKLGINEYL 92
Score = 56 (24.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 27/122 (22%), Positives = 54/122 (44%)
Query: 1332 GPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNL-QLNPIRELLELC 1390
G R +L D +E+ +GAI +D+G L T + +L++ + +L +L+P ++ L
Sbjct: 103 GKRRRSILADALEAIVGAIYIDAG--LETCRRCVLNWYGE--RVDDLSKLSPKKDAKSLL 158
Query: 1391 NSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISAC-----ATNLSRKEAIRIASQQLFS 1445
+ + P K EA + ++ N +R+ A +IA+++
Sbjct: 159 QEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218
Query: 1446 KL 1447
L
Sbjct: 219 LL 220
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 139 (54.0 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 42/125 (33%), Positives = 61/125 (48%)
Query: 426 KCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485
KCIVF A LSY L S++C L G +S++ + L FR G
Sbjct: 351 KCIVFTQTKRDADRLSYALAR-----SFKCEALHG------DISQSQRERTLAGFRDGHF 399
Query: 486 NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAFLVDSGNQ-RE 543
N+LVAT V GLD+ L+I ++LP +F+ GR R + A L+ S +Q R
Sbjct: 400 NILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRA 459
Query: 544 LDLIK 548
+ +I+
Sbjct: 460 VKIIE 464
Score = 60 (26.2 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 27/87 (31%), Positives = 40/87 (45%)
Query: 63 QLELCKKAME-ENIIVYLGTGCGKTH------IAVLLIYELAHLIRKPQKSICIFLAPTV 115
Q + + AME ++I TG GKT I ++ Y H + + +C+ LAPT
Sbjct: 131 QKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKH--GRGRNPLCLVLAPTR 188
Query: 116 ALVQQQAKVIEESIGFKVRTFC--GGS 140
L +Q K ES + T C GG+
Sbjct: 189 ELARQVEKEFRESAP-SLDTICLYGGT 214
>TIGR_CMR|APH_1149 [details] [associations]
symbol:APH_1149 "ribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:YP_505691.1 HSSP:Q9X0I6 ProteinModelPortal:Q2GIW0
STRING:Q2GIW0 GeneID:3930479 KEGG:aph:APH_1149 PATRIC:20951072
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
BioCyc:APHA212042:GHPM-1155-MONOMER TIGRFAMs:TIGR02191
Uniprot:Q2GIW0
Length = 236
Score = 126 (49.4 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 35/99 (35%), Positives = 48/99 (48%)
Query: 1220 GHQFLHRGLLLQAFVHPSF--NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLT 1277
G++F LL A HPS R Y+RLEFLGDAVL +++ LY+++P G LT
Sbjct: 21 GYRFQDHELLKTAVTHPSIAAERYAS-YERLEFLGDAVLGLVVSEMLYTLFPDDSEGLLT 79
Query: 1278 DLRSMLVNNQAFANVAVDQSFYKFLIFDSNVL-SETINN 1315
R LV +A + L+ L S I+N
Sbjct: 80 KKRIALVRGSKVVEIAQSLNLGNILLMSKGELTSGGISN 118
Score = 49 (22.3 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 1520 RSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIV 1560
+ A++ L E + + P++ + GL H +FT V V
Sbjct: 163 QDAKTALQEWAQGHNFAIPSYRLINKSGLEHAPVFTVEVTV 203
Score = 45 (20.9 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 1339 LGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRE 1385
L + +E+ +GAI +D G L +V +L P+ +NL P+++
Sbjct: 122 LENALEALIGAIYVDGG--LESVRHFILQHWKPLA--TNLADTPLQD 164
>TIGR_CMR|SO_1348 [details] [associations]
symbol:SO_1348 "ribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 RefSeq:NP_716968.1 ProteinModelPortal:Q8EH81
GeneID:1169169 KEGG:son:SO_1348 PATRIC:23522350 Uniprot:Q8EH81
Length = 226
Score = 121 (47.7 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 1219 LGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTD 1278
LG++F + LL QA H S +RLEFLGD++L +I+ LY +PK G L+
Sbjct: 14 LGYEFKNLDLLTQALTHRSAANKHN--ERLEFLGDSILSIVISDALYHQFPKATEGDLSR 71
Query: 1279 LRSMLVNNQAFANVAVDQSF 1298
+R+ LV +A Q+F
Sbjct: 72 MRATLVRGDTLTLIA--QAF 89
Score = 60 (26.2 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 34/128 (26%), Positives = 56/128 (43%)
Query: 1328 EVKEGP-RCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIREL 1386
E+K G R +L D VE+ +GAI LDS +L +++L++ L +N ++
Sbjct: 101 ELKSGGFRRESILADAVEAIIGAIYLDS--DLEVCRQLLLNWYAERLAEIQPGINQ-KDA 157
Query: 1387 LELCNSY--DLDLQFPSLK----KGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIAS 1440
L Y L P + +G V + D+ S SR++A +IA+
Sbjct: 158 KTLLQEYLQGLKKPLPDYQVINIEGDAHDQTFTVECRIDDLSQSVIGVASSRRKAEQIAA 217
Query: 1441 QQLFSKLK 1448
Q+ LK
Sbjct: 218 AQVLELLK 225
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 114 (45.2 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 42/150 (28%), Positives = 69/150 (46%)
Query: 407 KKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLK 466
+K L+G+L +++ M +FVN T R ++ + L + C + G
Sbjct: 232 EKFPLLLGLLRKEGMERTM---IFVN---TKREAEFLDERLN-ANDFPCRVISG-----D 279
Query: 467 SMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-A 525
R +K ILE F+SG+L +++AT V GL I VI +DLP+ ++ GR A
Sbjct: 280 VEQRKRLK-ILEDFKSGKLPIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTA 338
Query: 526 RMPQSEYAF-LVDSGNQRELDLIKNFSKEE 554
R A + D L+ I + K++
Sbjct: 339 RAGAEGKAISMADEDGAFHLEAIHEYIKDK 368
Score = 79 (32.9 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 33/115 (28%), Positives = 53/115 (46%)
Query: 81 TGCGKTHIAVLLIYELAHLIR-----KPQKSICIFLAPT---VALVQQQAKVIEESIGFK 132
TG GKT A LI L+R + + I LAPT V +++ A+V+ GF
Sbjct: 47 TGTGKT--AAFLISLFTKLLRSGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFT 104
Query: 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
++ GG +K ++ D V+V P L+ L + ++ I +L+ DE
Sbjct: 105 IQAIYGGVDYMKQKNALKEGAD---VVVGTPGRLIDYLKQKVYSLKEIEMLVIDE 156
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 113 (44.8 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 43/174 (24%), Positives = 77/174 (44%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V E S+K +LI ++ ++ K I+FV T R + + ++ W
Sbjct: 312 LQIVDVCME---SEKDHKLIQLMEEIMAEKENKTIIFVE---TKRRCDDLTRRMR-RDGW 364
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGL--DIQTCCLVIRFDL 511
+ G S+ +L +FRSG+ +L+AT V GL D++ VI +D
Sbjct: 365 PAMCIHG------DKSQPERDWVLNEFRSGKAPILIATDVASRGLGFDVEDVKFVINYDY 418
Query: 512 PETVASFIQSRGR-ARMPQ--SEYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
P + ++ GR AR + Y F ++ +LIK + +N ++M
Sbjct: 419 PNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLM 472
Score = 84 (34.6 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 37/138 (26%), Positives = 61/138 (44%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESIG--FKVR 134
TG GKT +A LL I + H + + IC+ LAPT L QQ +V ++ G +++
Sbjct: 138 TGSGKT-LAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADD-YGKCSRLK 195
Query: 135 TFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192
+ C GG+ + D E+ + E+ + P L+ L + L+ DE
Sbjct: 196 STCIYGGAPKGPQIRDLERGV---EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRML 252
Query: 193 VKSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 253 DMGFEPQIRKIVDQIRPD 270
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 118 (46.6 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 40/172 (23%), Positives = 74/172 (43%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V + KL+RL L ++ K I+FV T R + + ++ W
Sbjct: 316 LQIVDVCNDGEKEDKLIRL---LEEIMSEKENKTIIFVE---TKRRCDDLTRRMR-RDGW 368
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+G++ R+ +L +F+ G+ +L+AT V GLD++ VI FD P
Sbjct: 369 PA---MGIHGDKNQQERDW---VLNEFKYGKAPILIATDVASRGLDVEDVKFVINFDYPN 422
Query: 514 TVASFIQSRGRARMPQ---SEYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+I GR Q + Y F + ++ DL+ + +N +++
Sbjct: 423 NSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLI 474
Score = 86 (35.3 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 44/167 (26%), Positives = 70/167 (41%)
Query: 51 TDKDPKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLL--IYELAH--LIRKPQKS 106
TD P Q A+ + + L K M + TG GKT ++ LL I + H +
Sbjct: 117 TDPTPIQ-AQGWPVALSGKDM----VGIAQTGSGKT-LSYLLPAIVHINHQPFLEHGDGP 170
Query: 107 ICIFLAPTVALVQQQAKVIEE-SIGFKVRTFC--GGSKRLKSHCDWEKEIDQYEVLVMIP 163
IC+ LAPT L QQ +V E ++++ C GG+ + D E+ + E+ + P
Sbjct: 171 ICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGV---EICIATP 227
Query: 164 QILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPD 210
L+ L + L+ DE P + + D +PD
Sbjct: 228 GRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 274
Score = 38 (18.4 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 900 KNGYSPYKDSDSSS 913
+NG S Y +S SSS
Sbjct: 532 QNGSSSYNNSSSSS 545
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 119 (46.9 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 43/172 (25%), Positives = 81/172 (47%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V + +KL+RL+ + + ++ K IVFV T R + + ++ W
Sbjct: 314 LQIVDVCHDVEKDEKLIRLMEEIMS---EKENKTIVFVE---TKRRCDELTRKMR-RDGW 366
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+G++ G KS +L +F+ G+ +L+AT V GLD++ VI +D P
Sbjct: 367 PA---MGIH-GDKSQQERDW--VLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 514 TVASFIQSRGR-ARMPQS--EYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ +I GR AR ++ Y F + ++ DLI + +N +++
Sbjct: 421 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 472
Score = 77 (32.2 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 35/137 (25%), Positives = 58/137 (42%)
Query: 81 TGCGKTHIAVLL--IYELAH--LIRKPQKSICIFLAPTVALVQQQAKVIEESI-GFKVRT 135
TG GKT ++ LL I + H + + IC+ LAPT L QQ +V E ++++
Sbjct: 140 TGSGKT-LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKS 198
Query: 136 FC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQV 193
C GG+ + D E+ ++ + P L+ L + L+ DE
Sbjct: 199 TCIYGGAPKGPQIRDLERGVEN---CIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD 255
Query: 194 KSNHPYAKIMKDFYKPD 210
P + + D +PD
Sbjct: 256 MGFEPQIRKIVDQIRPD 272
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 142 (55.0 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 45/144 (31%), Positives = 73/144 (50%)
Query: 428 IVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNL 487
++FVNR TA L +L+ L F + H M ++ + L +F++G +
Sbjct: 257 VIFVNRTTTAEVLRRMLRKLDFRVA-SLH---------SEMPQSERTNSLHRFKAGAARI 306
Query: 488 LVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARMPQSEYAFLVDSGNQRELDL 546
L+AT V GLDI T LVI FD+P FI GR AR + A V ++++D
Sbjct: 307 LIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDA--VSIIGEKDIDR 364
Query: 547 IKNFSKEEDRMNR--EIMDRTSSD 568
I++ E+R+N+ E+++ + D
Sbjct: 365 IQSI---EERINKKMELLEDVNDD 385
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 106 (42.4 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 37/171 (21%), Positives = 74/171 (43%)
Query: 397 IEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH 456
+++L+E KL+ L+ + Q+ K I+FV T R + + ++ W
Sbjct: 352 VDILEEHAKQAKLMELLNHIMN---QKECKTIIFVE---TKRKADELTRAMR-RDGWPTL 404
Query: 457 FLVG-VNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETV 515
+ G N G + +L++F++G+ +++AT V GLD+ VI +D P
Sbjct: 405 CIHGDKNQGERDW-------VLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNS 457
Query: 516 ASFIQSRGRARMPQSE---YAFLVDSGNQRELDLIKNFSKEEDRMNREIMD 563
++ GR + Y F + + DL+K + + + + + D
Sbjct: 458 EDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQTVPQALRD 508
Score = 89 (36.4 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 42/145 (28%), Positives = 65/145 (44%)
Query: 74 NIIVYLGTGCGKTHIAVLL-----IYELAHLIRKPQKSICIFLAPTVALVQQQAKV-IE- 126
+II TG GKT +A +L I + AH R ++ + L PT L QQ +V I+
Sbjct: 168 DIISIAKTGSGKT-LAFMLPALVHITKQAHRQRGEGPAVLVLL-PTRELAQQVQEVSIDF 225
Query: 127 -ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIF 185
S+G K+ GG+ + D E+ +D ++V P LL L + M+ + L+
Sbjct: 226 CHSLGLKMTCLFGGASKGPQARDLERGVD---IVVATPGRLLDFLDNGTTNMKKCSYLVL 282
Query: 186 DECHHAQVKSNHPYAKIMKDFYKPD 210
DE P K + +PD
Sbjct: 283 DEADRMLDMGFEPQIKKIIGQIRPD 307
>UNIPROTKB|F1NTS2 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 IPI:IPI00588271 EMBL:AADN02041229
EMBL:AADN02041230 ProteinModelPortal:F1NTS2
Ensembl:ENSGALT00000038969 OMA:KTRNGVD ArrayExpress:F1NTS2
Uniprot:F1NTS2
Length = 414
Score = 117 (46.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 38/141 (26%), Positives = 69/141 (48%)
Query: 426 KCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485
+ ++F N T R + ++ + ++ +F V G M + +SI+++FRSG
Sbjct: 282 QAVIFCN---TKRKVDWLTEKMR-----EANFTVSSMHG--DMPQKERESIMKEFRSGAS 331
Query: 486 NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF-LVDSGNQRE 543
+L++T V GLD+ L+I +DLP +I GR+ R + A V + + R
Sbjct: 332 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRI 391
Query: 544 L-DLIKNFSKEEDRMNREIMD 563
L D+ + +S + D M + D
Sbjct: 392 LRDIEQYYSTQIDEMPMNVAD 412
Score = 72 (30.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 34/136 (25%), Positives = 57/136 (41%)
Query: 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKV-IEESIGFK 132
++I +G GKT A I L L + +++ + LAPT L Q KV +S+ K
Sbjct: 79 DVIAQSQSGTGKT--ATFSISVLQCLDIQVRETQALILAPTRELAVQIQKVGTSKSLPVK 136
Query: 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192
++ K D + + I LLY + R ++ I +L+ DE A
Sbjct: 137 MKELHKAMGSFKQEVDLPAGHEVARCISGIQLQLLYMIRRRSLRTRAIKMLVLDE---AD 193
Query: 193 VKSNHPYAKIMKDFYK 208
N + + + D Y+
Sbjct: 194 EMLNKGFKEQIYDVYR 209
>TIGR_CMR|ECH_1054 [details] [associations]
symbol:ECH_1054 "ribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003725 "double-stranded
RNA binding" evidence=ISS] [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HSSP:Q9X0I6 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_507839.1
ProteinModelPortal:Q2GFE4 STRING:Q2GFE4 GeneID:3927257
KEGG:ech:ECH_1054 PATRIC:20577460
BioCyc:ECHA205920:GJNR-1057-MONOMER Uniprot:Q2GFE4
Length = 226
Score = 131 (51.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 34/103 (33%), Positives = 55/103 (53%)
Query: 1218 LLGHQFLHRGLLLQAFVHPSF---NRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPG 1274
++ + F + LL +A HPS + L Y+RLEFLGDAVL+ +I+ L++++PK G
Sbjct: 8 IIKYNFKNPQLLNEALTHPSLVSKDTLKFNYERLEFLGDAVLNIVISEMLFNIFPKDTEG 67
Query: 1275 QLTDLRSMLVNNQAFANVAVDQSFYKFLIF-DSNVLSETINNY 1316
L ++ LV VA + +F++ D INN+
Sbjct: 68 NLAKKKTALVCGNKLVEVAQSINLGQFIMMSDGERACGGINNF 110
Score = 44 (20.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 1339 LGDLVESSLGAILLDSGF 1356
L + +E+ +GAI LD GF
Sbjct: 113 LENALEALIGAIYLDGGF 130
>UNIPROTKB|F6QFS2 [details] [associations]
symbol:F6QFS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GeneTree:ENSGT00640000091530
EMBL:DAAA02052960 EMBL:DAAA02052959 IPI:IPI00843333
Ensembl:ENSBTAT00000043352 OMA:SHERQLE Uniprot:F6QFS2
Length = 373
Score = 137 (53.3 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 47/170 (27%), Positives = 77/170 (45%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQ 119
R YQL + + A+ N +V L TG GKT IA +++Y P + +F+APT LV
Sbjct: 98 RDYQLHIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWF--PSGKV-VFMAPTKPLVT 154
Query: 120 QQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIKME 178
QQ + +G + ++ KEI VL + PQ+++ L
Sbjct: 155 QQIEACYRVMGIPQSHMAEMTGSTQAFT--RKEIWSSKRVLFLTPQVMVNDLSRGACPAA 212
Query: 179 LIALLIFDECHHAQVKSNHPYAKI--MKDFYKPDI----MKVPRIFGMTA 222
I L+ DE H A N+ Y ++ +K FY + +++P + + A
Sbjct: 213 EIKCLVIDEAHKAL--GNYAYCQVILLKIFYSQNFRLLNLRIPPVSSIKA 260
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 102 (41.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 28/94 (29%), Positives = 49/94 (52%)
Query: 460 GVNAGLKSMSRN-AMKS-ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVAS 517
G++A R+ A+++ +LE F+SG++ LVAT V G+DI V+ +DLP
Sbjct: 267 GIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADE 326
Query: 518 FIQSRGRARMPQS--EYAFLVDSGNQRELDLIKN 549
++ GR ++ E V N + L +I++
Sbjct: 327 YVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIES 360
Score = 85 (35.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 35/119 (29%), Positives = 53/119 (44%)
Query: 74 NIIVYLGTGCGKTHIAVLLIYE-LAHLIRKPQKSI-CIFLAPTVALVQQQAKVIEE---S 128
++I TG GKT VL I E L + +K + + L PT L Q A+ +E+
Sbjct: 40 DLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKD 99
Query: 129 IGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
G K GG + ++ ID +VLV P L+ R + E I +++ DE
Sbjct: 100 TGLKSLAVFGG---VDEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDE 155
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 102 (41.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 28/94 (29%), Positives = 49/94 (52%)
Query: 460 GVNAGLKSMSRN-AMKS-ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVAS 517
G++A R+ A+++ +LE F+SG++ LVAT V G+DI V+ +DLP
Sbjct: 267 GIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADE 326
Query: 518 FIQSRGRARMPQS--EYAFLVDSGNQRELDLIKN 549
++ GR ++ E V N + L +I++
Sbjct: 327 YVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIES 360
Score = 85 (35.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 35/119 (29%), Positives = 53/119 (44%)
Query: 74 NIIVYLGTGCGKTHIAVLLIYE-LAHLIRKPQKSI-CIFLAPTVALVQQQAKVIEE---S 128
++I TG GKT VL I E L + +K + + L PT L Q A+ +E+
Sbjct: 40 DLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKD 99
Query: 129 IGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
G K GG + ++ ID +VLV P L+ R + E I +++ DE
Sbjct: 100 TGLKSLAVFGG---VDEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDE 155
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 120 (47.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 36/112 (32%), Positives = 60/112 (53%)
Query: 456 HFLVG-VNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPET 514
HF V ++A L R+ +I+++FRSG +L++T + G+D+Q LVI +DLP
Sbjct: 286 HFTVSAIHADLPQAERD---TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPAN 342
Query: 515 VASFIQSRGRA-RMPQSEYA--FLVDS--GNQRELDLIKNFSKEEDRMNREI 561
++I GR R + A F+ D G RE++ K +S + + M +I
Sbjct: 343 KENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIE--KFYSTQIEEMPADI 392
Score = 66 (28.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 29/115 (25%), Positives = 49/115 (42%)
Query: 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKV 133
+++ +G GKT A I L + + + + LAPT L Q VI +IG +
Sbjct: 62 DVLAQAQSGTGKT--ATFTISALQRINENEKATQALILAPTRELALQIKNVIT-AIGLYL 118
Query: 134 RTFCGGSKRLKSHCD-WEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
+ S S D E +++V P +L + R+ K + + + I DE
Sbjct: 119 KVTVHASIGGTSMSDDIEAFRSGVQIVVGTPGRVLDMIERRYFKTDKVKMFILDE 173
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 120 (47.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 36/112 (32%), Positives = 60/112 (53%)
Query: 456 HFLVG-VNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPET 514
HF V ++A L R+ +I+++FRSG +L++T + G+D+Q LVI +DLP
Sbjct: 286 HFTVSAIHADLPQAERD---TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPAN 342
Query: 515 VASFIQSRGRA-RMPQSEYA--FLVDS--GNQRELDLIKNFSKEEDRMNREI 561
++I GR R + A F+ D G RE++ K +S + + M +I
Sbjct: 343 KENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIE--KFYSTQIEEMPADI 392
Score = 66 (28.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 29/115 (25%), Positives = 49/115 (42%)
Query: 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKV 133
+++ +G GKT A I L + + + + LAPT L Q VI +IG +
Sbjct: 62 DVLAQAQSGTGKT--ATFTISALQRINENEKATQALILAPTRELALQIKNVIT-AIGLYL 118
Query: 134 RTFCGGSKRLKSHCD-WEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
+ S S D E +++V P +L + R+ K + + + I DE
Sbjct: 119 KVTVHASIGGTSMSDDIEAFRSGVQIVVGTPGRVLDMIERRYFKTDKVKMFILDE 173
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 137 (53.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 46/144 (31%), Positives = 75/144 (52%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KLL L+GI Q+ IVFV++ A L L++L AS+ C L G G+
Sbjct: 746 KLLELLGIY-----QEAGSIIVFVDKQENADIL---LRDL-MKASYPCMSLHG---GIDQ 793
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQS---RGR 524
R++ +I++ F+SG++ LL+AT V GLD++ LV+ +D+P ++ GR
Sbjct: 794 FDRDS--TIID-FKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGR 850
Query: 525 ARMPQSEYAFLVDSGNQRELDLIK 548
A S Y F+ ++ D+I+
Sbjct: 851 AGKKGSAYTFITPEQSRYAGDIIR 874
Score = 61 (26.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 33/141 (23%), Positives = 58/141 (41%)
Query: 81 TGCGKTHIAVLLIYELAHLIRKPQK-----SICIFLAPTVALVQQQAKVIEE-SIGFKVR 134
TG GKT +L ++ H++ +P +I I +APT L Q K I + S +R
Sbjct: 556 TGSGKTLAFILPMFR--HILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLR 613
Query: 135 TFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH---RFIKMELIALLIFDECH 189
C GG+ + + ++ E++V P ++ L R + + ++ DE
Sbjct: 614 PVCVYGGTGISEQIAELKRGA---EIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEAD 670
Query: 190 HAQVKSNHPYAKIMKDFYKPD 210
P + D +PD
Sbjct: 671 RMFDMGFEPQVMRIIDNVRPD 691
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 136 (52.9 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 55/196 (28%), Positives = 93/196 (47%)
Query: 394 LSCIEVLKEPFFSK----KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKF 449
L ++ L + F + K L L+ ILS + ++FV+ T + LS +L L+
Sbjct: 268 LKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEV 327
Query: 450 LASWRCHFLVGVNAGLKSMSRNAMK-SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIR 508
N + S++ +M+ S L KF+SG++ +L+AT V GLDI T LVI
Sbjct: 328 -----------ENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVIN 376
Query: 509 FDLPETVASFIQSRGR-ARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSS 567
+D+P ++ GR AR + A + + E D +K K E+ + ++ M+ +
Sbjct: 377 YDIPRDPRDYVHRVGRTARAGRGGLAVSIIT----ETD-VKLIHKIEEEVGKK-MEPYNK 430
Query: 568 DAFTCSEERIYKVDSS 583
T S E + KV +
Sbjct: 431 KVITDSLE-VTKVSKA 445
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 119 (46.9 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 43/172 (25%), Positives = 81/172 (47%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L ++V + +KL+RL+ + + ++ K IVFV T R + + ++ W
Sbjct: 235 LQIVDVCHDVEKDEKLIRLMEEIMS---EKENKTIVFVE---TKRRCDELTRKMR-RDGW 287
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+G++ G KS +L +F+ G+ +L+AT V GLD++ VI +D P
Sbjct: 288 PA---MGIH-GDKSQQERDW--VLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 341
Query: 514 TVASFIQSRGR-ARMPQS--EYAFLVDSGNQRELDLIKNFSKEEDRMNREIM 562
+ +I GR AR ++ Y F + ++ DLI + +N +++
Sbjct: 342 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLL 393
Score = 68 (29.0 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 27/107 (25%), Positives = 45/107 (42%)
Query: 107 ICIFLAPTVALVQQQAKVIEESI-GFKVRTFC--GGSKRLKSHCDWEKEIDQYEVLVMIP 163
IC+ LAPT L QQ +V E ++++ C GG+ + D E+ + E+ + P
Sbjct: 90 ICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV---EICIATP 146
Query: 164 QILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPD 210
L+ L + L+ DE P + + D +PD
Sbjct: 147 GRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 193
>POMBASE|SPCC285.03 [details] [associations]
symbol:SPCC285.03 "ATP-dependent RNA helicase Dbp6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC285.03 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14807 EMBL:D89259 PIR:T41249 PIR:T43184
RefSeq:NP_588332.1 ProteinModelPortal:Q76PD3
EnsemblFungi:SPCC285.03.1 GeneID:2538809 KEGG:spo:SPCC285.03
HOGENOM:HOG000203294 OMA:HIDQTPG OrthoDB:EOG490BK3 NextBio:20799991
Uniprot:Q76PD3
Length = 604
Score = 118 (46.6 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 34/119 (28%), Positives = 62/119 (52%)
Query: 467 SMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-A 525
S+SR+ K I+ +F +G+LNLLV + + G+D+ VI +D P +V S++ GR A
Sbjct: 470 SLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTA 529
Query: 526 RMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREI-MDRTSSDAFTCSEERIYKVDSS 583
R + +A+ + ++ +FSK ++ R + + R + SEE + D +
Sbjct: 530 RAGREGFAWTLVQSHEGH-----HFSKLVKQLRRTLPIKRIKIEFSHISEEFVVAYDKA 583
Score = 70 (29.7 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 34/123 (27%), Positives = 55/123 (44%)
Query: 74 NIIVYLGTGCGKTHIAVLLIYE-LAHLIRKPQKSICIFLAPTVALVQQQAKVIE---ESI 129
++ V TG GKT V+ I + L+H R + C+ + PT L Q AK E
Sbjct: 175 DVCVSAATGSGKTLSYVIPIVQCLSH--RTVPRLRCVVIVPTRELTVQVAKTFEYYMSGA 232
Query: 130 GFKVRTFCGGSKRLKSHCDWEKEIDQYE----VLVMIPQILL-YCLYHRFIKMELIALLI 184
G +V + G K L+ H ++ D+ E VLV P L+ + ++ + ++
Sbjct: 233 GLQVCAWTG-QKSLR-HETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMV 290
Query: 185 FDE 187
DE
Sbjct: 291 IDE 293
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 110 (43.8 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 44/156 (28%), Positives = 70/156 (44%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 254 KLDTLCDLYETLTITQ---AVIFIN---TRRKVDWLTE--KMHAR---DFTVSAMHG--D 300
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 301 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 360
Query: 527 MPQSEYAF-LV---DSGNQRELDLIKNFSKEEDRMN 558
+ A +V D R+++ N S EE +N
Sbjct: 361 FGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 396
Score = 73 (30.8 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 32/136 (23%), Positives = 61/136 (44%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
P I ++ L C K + +I +G GKT + I + L K +++ LAPT
Sbjct: 55 PSAIQQRAILP-CIKGYD--VIAQAQSGTGKTATFAISILQQIELDLKATQALV--LAPT 109
Query: 115 VALVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY 171
L QQ KV+ + +G GG+ +++ + +++ ++V P + L
Sbjct: 110 RELAQQIQKVVMALGDYMGASCHACIGGTN-VRAEVQ-KLQMEAPHIIVGTPGRVFDMLN 167
Query: 172 HRFIKMELIALLIFDE 187
R++ + I + + DE
Sbjct: 168 RRYLSPKYIKMFVLDE 183
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 110 (43.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 44/156 (28%), Positives = 70/156 (44%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 259 KLDTLCDLYETLTITQ---AVIFIN---TRRKVDWLTE--KMHAR---DFTVSAMHG--D 305
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 306 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 365
Query: 527 MPQSEYAF-LV---DSGNQRELDLIKNFSKEEDRMN 558
+ A +V D R+++ N S EE +N
Sbjct: 366 FGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 401
Score = 73 (30.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 32/136 (23%), Positives = 61/136 (44%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
P I ++ L C K + +I +G GKT + I + L K +++ LAPT
Sbjct: 55 PSAIQQRAILP-CIKGYD--VIAQAQSGTGKTATFAISILQQIELDLKATQALV--LAPT 109
Query: 115 VALVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY 171
L QQ KV+ + +G GG+ +++ + +++ ++V P + L
Sbjct: 110 RELAQQIQKVVMALGDYMGASCHACIGGTN-VRAEVQ-KLQMEAPHIIVGTPGRVFDMLN 167
Query: 172 HRFIKMELIALLIFDE 187
R++ + I + + DE
Sbjct: 168 RRYLSPKYIKMFVLDE 183
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 110 (43.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 44/156 (28%), Positives = 70/156 (44%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 259 KLDTLCDLYETLTITQ---AVIFIN---TRRKVDWLTE--KMHAR---DFTVSAMHG--D 305
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 306 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 365
Query: 527 MPQSEYAF-LV---DSGNQRELDLIKNFSKEEDRMN 558
+ A +V D R+++ N S EE +N
Sbjct: 366 FGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 401
Score = 73 (30.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 32/136 (23%), Positives = 61/136 (44%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
P I ++ L C K + +I +G GKT + I + L K +++ LAPT
Sbjct: 55 PSAIQQRAILP-CIKGYD--VIAQAQSGTGKTATFAISILQQIELDLKATQALV--LAPT 109
Query: 115 VALVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY 171
L QQ KV+ + +G GG+ +++ + +++ ++V P + L
Sbjct: 110 RELAQQIQKVVMALGDYMGASCHACIGGTN-VRAEVQ-KLQMEAPHIIVGTPGRVFDMLN 167
Query: 172 HRFIKMELIALLIFDE 187
R++ + I + + DE
Sbjct: 168 RRYLSPKYIKMFVLDE 183
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 110 (43.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 44/156 (28%), Positives = 70/156 (44%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 259 KLDTLCDLYETLTITQ---AVIFIN---TRRKVDWLTE--KMHAR---DFTVSAMHG--D 305
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 306 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 365
Query: 527 MPQSEYAF-LV---DSGNQRELDLIKNFSKEEDRMN 558
+ A +V D R+++ N S EE +N
Sbjct: 366 FGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 401
Score = 73 (30.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 32/136 (23%), Positives = 61/136 (44%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
P I ++ L C K + +I +G GKT + I + L K +++ LAPT
Sbjct: 55 PSAIQQRAILP-CIKGYD--VIAQAQSGTGKTATFAISILQQIELDLKATQALV--LAPT 109
Query: 115 VALVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY 171
L QQ KV+ + +G GG+ +++ + +++ ++V P + L
Sbjct: 110 RELAQQIQKVVMALGDYMGASCHACIGGTN-VRAEVQ-KLQMEAPHIIVGTPGRVFDMLN 167
Query: 172 HRFIKMELIALLIFDE 187
R++ + I + + DE
Sbjct: 168 RRYLSPKYIKMFVLDE 183
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 110 (43.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 44/156 (28%), Positives = 70/156 (44%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 259 KLDTLCDLYETLTITQ---AVIFIN---TRRKVDWLTE--KMHAR---DFTVSAMHG--D 305
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 306 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 365
Query: 527 MPQSEYAF-LV---DSGNQRELDLIKNFSKEEDRMN 558
+ A +V D R+++ N S EE +N
Sbjct: 366 FGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 401
Score = 73 (30.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 32/136 (23%), Positives = 61/136 (44%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
P I ++ L C K + +I +G GKT + I + L K +++ LAPT
Sbjct: 55 PSAIQQRAILP-CIKGYD--VIAQAQSGTGKTATFAISILQQIELDLKATQALV--LAPT 109
Query: 115 VALVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY 171
L QQ KV+ + +G GG+ +++ + +++ ++V P + L
Sbjct: 110 RELAQQIQKVVMALGDYMGASCHACIGGTN-VRAEVQ-KLQMEAPHIIVGTPGRVFDMLN 167
Query: 172 HRFIKMELIALLIFDE 187
R++ + I + + DE
Sbjct: 168 RRYLSPKYIKMFVLDE 183
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 110 (43.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 44/156 (28%), Positives = 70/156 (44%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 259 KLDTLCDLYETLTITQ---AVIFIN---TRRKVDWLTE--KMHAR---DFTVSAMHG--D 305
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 306 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 365
Query: 527 MPQSEYAF-LV---DSGNQRELDLIKNFSKEEDRMN 558
+ A +V D R+++ N S EE +N
Sbjct: 366 FGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 401
Score = 73 (30.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 32/136 (23%), Positives = 61/136 (44%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
P I ++ L C K + +I +G GKT + I + L K +++ LAPT
Sbjct: 55 PSAIQQRAILP-CIKGYD--VIAQAQSGTGKTATFAISILQQIELDLKATQALV--LAPT 109
Query: 115 VALVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY 171
L QQ KV+ + +G GG+ +++ + +++ ++V P + L
Sbjct: 110 RELAQQIQKVVMALGDYMGASCHACIGGTN-VRAEVQ-KLQMEAPHIIVGTPGRVFDMLN 167
Query: 172 HRFIKMELIALLIFDE 187
R++ + I + + DE
Sbjct: 168 RRYLSPKYIKMFVLDE 183
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 110 (43.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 44/156 (28%), Positives = 70/156 (44%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 259 KLDTLCDLYETLTITQ---AVIFIN---TRRKVDWLTE--KMHAR---DFTVSAMHG--D 305
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 306 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 365
Query: 527 MPQSEYAF-LV---DSGNQRELDLIKNFSKEEDRMN 558
+ A +V D R+++ N S EE +N
Sbjct: 366 FGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 401
Score = 73 (30.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 32/136 (23%), Positives = 61/136 (44%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
P I ++ L C K + +I +G GKT + I + L K +++ LAPT
Sbjct: 55 PSAIQQRAILP-CIKGYD--VIAQAQSGTGKTATFAISILQQIELDLKATQALV--LAPT 109
Query: 115 VALVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY 171
L QQ KV+ + +G GG+ +++ + +++ ++V P + L
Sbjct: 110 RELAQQIQKVVMALGDYMGASCHACIGGTN-VRAEVQ-KLQMEAPHIIVGTPGRVFDMLN 167
Query: 172 HRFIKMELIALLIFDE 187
R++ + I + + DE
Sbjct: 168 RRYLSPKYIKMFVLDE 183
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 110 (43.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 44/156 (28%), Positives = 70/156 (44%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 259 KLDTLCDLYETLTITQ---AVIFIN---TRRKVDWLTE--KMHAR---DFTVSAMHG--D 305
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 306 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 365
Query: 527 MPQSEYAF-LV---DSGNQRELDLIKNFSKEEDRMN 558
+ A +V D R+++ N S EE +N
Sbjct: 366 FGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 401
Score = 73 (30.8 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 32/136 (23%), Positives = 61/136 (44%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
P I ++ L C K + +I +G GKT + I + L K +++ LAPT
Sbjct: 55 PSAIQQRAILP-CIKGYD--VIAQAQSGTGKTATFAISILQQIELDLKATQALV--LAPT 109
Query: 115 VALVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY 171
L QQ KV+ + +G GG+ +++ + +++ ++V P + L
Sbjct: 110 RELAQQIQKVVMALGDYMGASCHACIGGTN-VRAEVQ-KLQMEAPHIIVGTPGRVFDMLN 167
Query: 172 HRFIKMELIALLIFDE 187
R++ + I + + DE
Sbjct: 168 RRYLSPKYIKMFVLDE 183
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 114 (45.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 46/167 (27%), Positives = 78/167 (46%)
Query: 407 KKLLRLIGILSTFRLQQHMK--CIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAG 464
+K +L IL R Q H K +V+V+ V A L+ + + + + H G
Sbjct: 341 QKKQKLFDIL---RSQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIH-------G 390
Query: 465 LKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR 524
K M + ++ F GE+ +LV+T V G+D+ VI FD+P T+ +I GR
Sbjct: 391 EKPMKER--RDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGR 448
Query: 525 A-RMPQSEYAFLVDSGNQREL--DLIKNFSKEEDRMNREIMDRTSSD 568
A RM + A + + + R L DL+ + +E+++ TS +
Sbjct: 449 ASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKELINLTSRE 495
Score = 71 (30.1 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 45/208 (21%), Positives = 88/208 (42%)
Query: 63 QLELCKKAME-ENIIVYLGTGCGKT-HIAVLLI-----YELAHLIRKPQKSICIFLAPTV 115
Q++ A+ ++++ TG GKT V +I Y H + + + + LAPT
Sbjct: 137 QMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTR 196
Query: 116 AL---VQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH 172
L V+ QAK++ + + FK GG ++ + E+++ P ++ L
Sbjct: 197 ELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGV---ELIIGTPGRVVDLLSK 253
Query: 173 RFIKMELIALLIFDECH-HAQVKSNHPYAKIMKDFYKPDIM--------KVPRIFGMTAS 223
I+++ I + DE Q +I + +P ++ +V ++ G A
Sbjct: 254 HTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQPQVLLFSATISREVEKVGGSLAK 313
Query: 224 PVVGKGASAQANLP-KSINSLENLLDAK 250
++ + N P K++N L +DAK
Sbjct: 314 EII-LVSIGNPNKPNKAVNQLAIWVDAK 340
>UNIPROTKB|F1MUT6 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 EMBL:DAAA02045970
IPI:IPI00704706 UniGene:Bt.37736 Ensembl:ENSBTAT00000004644
OMA:KMSMNIL Uniprot:F1MUT6
Length = 484
Score = 96 (38.9 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 42/151 (27%), Positives = 74/151 (49%)
Query: 427 CIVFVNRIVTARALSYILQNLKFLASWRCHFLV--GVNAGLKS--MSRNAMKSILEKFRS 482
C ++ I A+A+ I + + ASW L G L S M +++E+FR
Sbjct: 330 CNIY-GAITIAQAM--IFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFRE 386
Query: 483 GELNLLVATKVGEEGLDIQTCCLVIRFDLPETV------ASFIQSRGRA-RMPQSEYAF- 534
G+ +LV T V G+D++ +VI FDLP +++ GR R + A
Sbjct: 387 GKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 446
Query: 535 LVDSGNQRE-LDLIK-NFSKEEDRMNREIMD 563
+VDS + L+ I+ +F+K+ +R++ + +D
Sbjct: 447 MVDSKHSMNILNRIQEHFNKKIERLDTDDLD 477
Score = 89 (36.4 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 36/134 (26%), Positives = 63/134 (47%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVL-LIYELAHLIRKPQKSICIFLAP 113
P +I ++ L L +N+I +G GKT VL ++ ++ R PQ C+ L+P
Sbjct: 120 PSKI-QENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANRHPQ---CLCLSP 175
Query: 114 TVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
T L Q KVIE+ F + R + + ++I ++ V+ +L +C +
Sbjct: 176 TYELALQTGKVIEQMGKFYPELKLAYAVR-GNKLERGQKISEHIVIGTPGTVLDWCSKLK 234
Query: 174 FIKMELIALLIFDE 187
FI + I + + DE
Sbjct: 235 FIDPKKIKVFVLDE 248
>UNIPROTKB|F1PIZ6 [details] [associations]
symbol:DDX25 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:WHFAERI
EMBL:AAEX03003382 Ensembl:ENSCAFT00000016722 Uniprot:F1PIZ6
Length = 462
Score = 102 (41.0 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 29/101 (28%), Positives = 47/101 (46%)
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA------SFIQSRGRA-RM 527
SI+++FR G+ +L+ T V G+D++ +V+ FDLP A +++ GR R
Sbjct: 358 SIIQRFRDGKEKVLITTNVSRRGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRF 417
Query: 528 PQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSD 568
+ AF N E+D + K +D N I D
Sbjct: 418 GKKGLAF-----NMIEVDKLPLLMKIQDHFNSSIKQLDPED 453
Score = 82 (33.9 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRK-PQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL + + + PQ C+ LAPT L Q +V+E F
Sbjct: 116 QNLIAQSQSGTGKTAAFVLAMLSRVNTLELFPQ---CLCLAPTYELALQTGRVVERMGKF 172
Query: 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHRFIKMELIALLIFDE 187
V + R +H ++ + ++++ P +L +C + I + I + + DE
Sbjct: 173 CVDVQVMYAIR-GNHIPRGTDVTK-QIIIGTPGTVLDWCFKRKLIDLTKIRVFVLDE 227
>UNIPROTKB|J9NU36 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00530000062880 EMBL:AAEX03006506
EMBL:AAEX03006505 Ensembl:ENSCAFT00000049437 Uniprot:J9NU36
Length = 423
Score = 110 (43.8 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 44/156 (28%), Positives = 70/156 (44%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 276 KLDTLCDLYETLTITQ---AVIFIN---TRRKVDWLTE--KMHAR---DFTVSAMHG--D 322
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 323 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 382
Query: 527 MPQSEYAF-LV---DSGNQRELDLIKNFSKEEDRMN 558
+ A +V D R+++ N S EE +N
Sbjct: 383 FGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 418
Score = 72 (30.4 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 27/117 (23%), Positives = 54/117 (46%)
Query: 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIE---ESIG 130
++I +G GKT + I + L K +++ LAPT L QQ KV+ + +G
Sbjct: 88 DVIAQAQSGTGKTATFAISILQQIELDLKATQALV--LAPTRELAQQIQKVVMALGDYMG 145
Query: 131 FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
GG+ +++ + +++ ++V P + L R++ + I + + DE
Sbjct: 146 ASCHACIGGTN-VRAEVQ-KLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 200
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 133 (51.9 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 70/270 (25%), Positives = 119/270 (44%)
Query: 288 CSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYIL 347
C+ + I R Q AL ++ H + + + + D+ F L++L A +L
Sbjct: 120 CAVLVGGIDRMQQTIALGKR--PHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLL 177
Query: 348 LSGDETMRNELIEAEGNTIDDSLCRF-ASQASEV--FAAICRRDGI----ASDLSCIEVL 400
E N+++E ++ F A+ +V C R+ + AS S ++ L
Sbjct: 178 NEDFEKSLNQILEEI--PLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTL 235
Query: 401 KEPF-F--SK-KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH 456
K+ + F +K K L+ ILS M +F R L+ +L++L F A
Sbjct: 236 KQQYRFVAAKYKDCYLVYILSEMPESTSM---IFTRTCDGTRFLALVLRSLGFRA----- 287
Query: 457 FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
+ ++ M+++ L KF++GE N+LV T V GLDI + +VI +D+P
Sbjct: 288 --IPISG---QMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSK 342
Query: 517 SFIQSRGR-ARMPQSEYAFLVDSGNQRELD 545
+I GR AR +S + NQ EL+
Sbjct: 343 DYIHRVGRTARAGRSGVG--ISLVNQYELE 370
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 106 (42.4 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 31/112 (27%), Positives = 58/112 (51%)
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-AR 526
MS+N + L KF++ ++L++T V GLDI +V+ FD+P +I GR AR
Sbjct: 334 MSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTAR 393
Query: 527 MPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREI-MDRTSSDAFTCSEERI 577
+S A + S Q +++L + + E + +++ + + D +ER+
Sbjct: 394 AGRSGKAITLVS--QYDIEL---YQRIEHLLGKQLTLYKCEEDEVMALQERV 440
Score = 78 (32.5 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 62/274 (22%), Positives = 105/274 (38%)
Query: 61 KYQLELCKKAMEENIIVYLG-TGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL-- 117
K Q E A++ ++ L TG GKT L I L L+ PQ+ + L PT L
Sbjct: 86 KIQREAIPVALQGKDVIGLAETGSGKTGAFALPI--LHALLENPQRYFALVLTPTRELAF 143
Query: 118 -VQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH-RFI 175
+ +Q + + IG K GG + K+ +++ P L+ L + +
Sbjct: 144 QIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKP---HIIIATPGRLVDHLENMKGF 200
Query: 176 KMELIALLIFDECHHA-QVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQA 234
++ I L+ DE + KI+K + + +F T + V K A
Sbjct: 201 NLKAIKYLVMDEADRILNMDFEVELDKILKVLPRE---RRTFLFSATMTKKVKKLQRASL 257
Query: 235 NLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTS-SSY-VTCSEQL 292
P + + N K +VE + F+ VY ++N+ + +S+ + CS
Sbjct: 258 KDPVKVE-VSN----KYQTVEQLQQSYLFIPVKYKDVYLVH-ILNELAGNSFMIFCSTCN 311
Query: 293 AEIKREQYISALSRK---LHDHQSLRNTTKQLNR 323
+K + AL LH S LN+
Sbjct: 312 NTVKTALMLRALGLAAIPLHGQMSQNKRLAALNK 345
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 109 (43.4 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 40/126 (31%), Positives = 61/126 (48%)
Query: 420 RLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEK 479
RL IVFV T + Y+ + L+ A + ++ G ++ ++A K+ L +
Sbjct: 390 RLPSPHSTIVFVP---TKHHVEYVTKLLRD-AGYLVSYIYG------TLDQHARKNQLYQ 439
Query: 480 FRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARMPQSEYAFLVDS 538
FR G N+LV T V G+DI VI F LP + FI GR AR +A+ +
Sbjct: 440 FRVGLTNVLVVTDVAARGIDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIV- 498
Query: 539 GNQREL 544
N++EL
Sbjct: 499 -NEKEL 503
Score = 81 (33.6 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 37/143 (25%), Positives = 65/143 (45%)
Query: 48 AQKTDKDPKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSI 107
A+K K P I RK + L + + ++ TG GKT VL + E R+P
Sbjct: 115 AKKGYKQPTPIQRK-TIPLIMEGRD--VVGMARTGSGKTAAFVLPLIERLKS-RQPGGVR 170
Query: 108 CIFLAPTVALVQQQAKVIEE-SIGFKVRTFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQ 164
+ L+P+ L Q K ++E S G +++ GG L+ D+ K + + +++V P
Sbjct: 171 AVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDS-LEE--DFSKMMTKPDIIVCTPG 227
Query: 165 ILLYCLYHRFIKMELIALLIFDE 187
L+ + + ++FDE
Sbjct: 228 RFLHLKVEMQYDLMTVQYIVFDE 250
>UNIPROTKB|J9NSS1 [details] [associations]
symbol:DDX25 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063236 CTD:29118 EMBL:AAEX03003382
RefSeq:XP_536532.3 Ensembl:ENSCAFT00000048680 GeneID:479396
KEGG:cfa:479396 Uniprot:J9NSS1
Length = 369
Score = 98 (39.6 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 29/101 (28%), Positives = 47/101 (46%)
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA------SFIQSRGRA-RM 527
SI+++FR G+ +L+ T V G+D++ +V+ FDLP A +++ GR R
Sbjct: 265 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRF 324
Query: 528 PQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSD 568
+ AF N E+D + K +D N I D
Sbjct: 325 GKKGLAF-----NMIEVDKLPLLMKIQDHFNSSIKQLDPED 360
Score = 82 (33.9 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRK-PQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL + + + PQ C+ LAPT L Q +V+E F
Sbjct: 23 QNLIAQSQSGTGKTAAFVLAMLSRVNTLELFPQ---CLCLAPTYELALQTGRVVERMGKF 79
Query: 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHRFIKMELIALLIFDE 187
V + R +H ++ + ++++ P +L +C + I + I + + DE
Sbjct: 80 CVDVQVMYAIR-GNHIPRGTDVTK-QIIIGTPGTVLDWCFKRKLIDLTKIRVFVLDE 134
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 91 (37.1 bits), Expect = 8.9e-05, Sum P(4) = 8.9e-05
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 472 AMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARMPQS 530
A K L KFRS ++ ++V T + G+DI VI FD P FI GR AR +S
Sbjct: 535 ARKINLAKFRSHQVGVMVVTDLAARGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRS 594
Query: 531 EYAFLVDSGNQ 541
A+ + S ++
Sbjct: 595 GIAYSLVSPDE 605
Score = 86 (35.3 bits), Expect = 8.9e-05, Sum P(4) = 8.9e-05
Identities = 53/249 (21%), Positives = 99/249 (39%)
Query: 74 NIIVYLGTGCGKTHIAVL-LIYELA-HLIRKPQKSICIFLAPTVALVQQQAKVIEE-SIG 130
+I+ TG GKT V+ +I +L H +++ L+PT L Q KV+++ S G
Sbjct: 269 DIVGMARTGSGKTGAFVIPMIQKLGDHSTTVGVRAV--ILSPTRELAIQTFKVVKDFSQG 326
Query: 131 FKVRTFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDEC 188
++RT GG D + D +++ P L++ L + + + ++FDE
Sbjct: 327 TQLRTILIVGGDSMEDQFTDLARNPD---IIIATPGRLMHHLLETGMSLSKVQYIVFDEA 383
Query: 189 HHA-QVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSIN-----S 242
++ N +I+ K + +F T ++ A N PK IN
Sbjct: 384 DRLFEMGFNEQLTEILS---KLSENRQTLLFSATLPSLLVDFVRAGLNNPKLINLDTDTK 440
Query: 243 LENLLDAKVYSVEDAEDLES--FVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKREQY 300
+ L +++ E L F+ ++ P T+++ + K+
Sbjct: 441 ISENLSLSFFTLRHEEKLGVLLFLLKDIIYKKPQLPTTETTTTTTTNNESNQQQQKKSST 500
Query: 301 ISALSRKLH 309
I +S K H
Sbjct: 501 IIFVSTKYH 509
Score = 55 (24.4 bits), Expect = 8.9e-05, Sum P(4) = 8.9e-05
Identities = 13/56 (23%), Positives = 31/56 (55%)
Query: 1391 NSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIASQQLFSK 1446
N +++ ++ K +++ + +D + FISA NL ++ A+ I+++ F+K
Sbjct: 858 NKFNIKIESSDKNDNNKKKLKSRSSSRDPNFFISATPENLIQERAMSISNR--FTK 911
Score = 53 (23.7 bits), Expect = 8.9e-05, Sum P(4) = 8.9e-05
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 745 GLFVKSLLPGEAEHLKVDLHLARGRSVMTKLVPSG--IMQAQ-QFQEMFLKVILDRSEFN 801
G+ + P E ++ +DLHL GR + K G I + F + I+DR
Sbjct: 595 GIAYSLVSPDEVPYM-IDLHLYLGRKFLNKFQYEGQTINDPKYSFYGTIPQTIIDRE--- 650
Query: 802 SEFVPLGKDDYCESSSST 819
+EFV + + + E S T
Sbjct: 651 TEFVNVQRKECIELLSLT 668
>ZFIN|ZDB-GENE-040426-2802 [details] [associations]
symbol:eif4a2 "eukaryotic translation initiation
factor 4A, isoform 2" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2802 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
EMBL:CT027646 EMBL:CU929049 IPI:IPI00507769
ProteinModelPortal:F1R166 Ensembl:ENSDART00000130781
ArrayExpress:F1R166 Bgee:F1R166 Uniprot:F1R166
Length = 411
Score = 109 (43.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 43/156 (27%), Positives = 71/156 (45%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 264 KLDTLCDLYETLTITQ---AVIFLN---TRRKVDWLTE--KMHAR---DFTVSALHG--D 310
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 311 MDQKERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 370
Query: 527 MPQSEYA--FLVDSGNQ--RELDLIKNFSKEEDRMN 558
+ A F+ + + R+++ N + EE MN
Sbjct: 371 FGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 406
Score = 71 (30.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 29/117 (24%), Positives = 54/117 (46%)
Query: 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVI---EESIG 130
++I +G GKT A I L L + +++ + LAPT L QQ KVI + +G
Sbjct: 76 DVIAQAQSGTGKT--ATFAISILQQLEIEQKETQALVLAPTRELAQQIQKVILALGDYMG 133
Query: 131 FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
GG+ +++ + + + ++V P + L R++ + I + + DE
Sbjct: 134 ASCHACIGGTN-VRNEMQ-KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 188
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 131 (51.2 bits), Expect = 0.00010, P = 0.00010
Identities = 43/153 (28%), Positives = 72/153 (47%)
Query: 411 RLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSR 470
++ G++S + ++ IVF T + + +++ L F R + G++ MS+
Sbjct: 226 KIEGLVSILNSELPIQAIVFCR---TKKRVDEVVEQLNF----RGYAAKGLHG---DMSQ 275
Query: 471 NAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQS 530
++ F++G+ LLVAT V GLDI VI FD+P+ S+I GR
Sbjct: 276 RERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGR 335
Query: 531 EYAFLVDSGNQRELDLIKNFSKE-EDRMNREIM 562
E + N RE L+K + R+ REI+
Sbjct: 336 E-GKAITLINYRERKLLKAIEEAINKRLKREIL 367
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 131 (51.2 bits), Expect = 0.00010, P = 0.00010
Identities = 43/153 (28%), Positives = 72/153 (47%)
Query: 411 RLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSR 470
++ G++S + ++ IVF T + + +++ L F R + G++ MS+
Sbjct: 226 KIEGLVSILNSELPIQAIVFCR---TKKRVDEVVEQLNF----RGYAAKGLHG---DMSQ 275
Query: 471 NAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQS 530
++ F++G+ LLVAT V GLDI VI FD+P+ S+I GR
Sbjct: 276 RERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGR 335
Query: 531 EYAFLVDSGNQRELDLIKNFSKE-EDRMNREIM 562
E + N RE L+K + R+ REI+
Sbjct: 336 E-GKAITLINYRERKLLKAIEEAINKRLKREIL 367
>UNIPROTKB|Q3ZBV2 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9913 "Bos taurus" [GO:0031965 "nuclear membrane"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005643
"nuclear pore" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0015031 GO:GO:0031965 GO:GO:0005643
GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000063236 EMBL:BC103093 IPI:IPI00788586
RefSeq:NP_001029743.1 UniGene:Bt.49612 HSSP:Q9UHL0
ProteinModelPortal:Q3ZBV2 SMR:Q3ZBV2 PRIDE:Q3ZBV2
Ensembl:ENSBTAT00000004645 GeneID:529929 KEGG:bta:529929 CTD:55308
HOVERGEN:HBG107989 InParanoid:Q3ZBV2 OMA:MMAINTI OrthoDB:EOG46MBJK
NextBio:20875139 ArrayExpress:Q3ZBV2 Uniprot:Q3ZBV2
Length = 478
Score = 96 (38.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 42/151 (27%), Positives = 74/151 (49%)
Query: 427 CIVFVNRIVTARALSYILQNLKFLASWRCHFLV--GVNAGLKS--MSRNAMKSILEKFRS 482
C ++ I A+A+ I + + ASW L G L S M +++E+FR
Sbjct: 324 CNIY-GAITIAQAM--IFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFRE 380
Query: 483 GELNLLVATKVGEEGLDIQTCCLVIRFDLPETV------ASFIQSRGRA-RMPQSEYAF- 534
G+ +LV T V G+D++ +VI FDLP +++ GR R + A
Sbjct: 381 GKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 440
Query: 535 LVDSGNQRE-LDLIK-NFSKEEDRMNREIMD 563
+VDS + L+ I+ +F+K+ +R++ + +D
Sbjct: 441 MVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
Score = 86 (35.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 32/116 (27%), Positives = 55/116 (47%)
Query: 73 ENIIVYLGTGCGKTHIAVL-LIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL ++ + R PQ C+ L+PT L Q KVIE+ F
Sbjct: 131 QNLIAQSQSGTGKTAAFVLAMLSRVEPAERYPQ---CLCLSPTYELALQTGKVIEQMGKF 187
Query: 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
+ R + + ++I ++ V+ +L +C +FI + I + + DE
Sbjct: 188 HPELKLAYAVR-GNKLERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 242
>UNIPROTKB|F1S432 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:HETIFEV
EMBL:CU929739 Ensembl:ENSSSCT00000003016 Uniprot:F1S432
Length = 481
Score = 94 (38.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 29/99 (29%), Positives = 55/99 (55%)
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETV------ASFIQSRGRA-RM 527
+++E+FR G+ +LV T V G+D++ +VI FDLP +++ GR R
Sbjct: 376 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 435
Query: 528 PQSEYAF-LVDSGNQRE-LDLIK-NFSKEEDRMNREIMD 563
+ A +VDS + L+ I+ +F+K+ +R++ + +D
Sbjct: 436 GKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 474
Score = 88 (36.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 36/134 (26%), Positives = 63/134 (47%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVL-LIYELAHLIRKPQKSICIFLAP 113
P +I ++ L L +N+I +G GKT VL ++ ++ R PQ C+ L+P
Sbjct: 117 PSKI-QENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANRYPQ---CLCLSP 172
Query: 114 TVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHR 173
T L Q KVIE+ F + R + + ++I ++ V+ +L +C +
Sbjct: 173 TYELALQTGKVIEQMGKFYPELKLAYAVR-GNKLERGQKISEHIVIGTPGTVLDWCSKLK 231
Query: 174 FIKMELIALLIFDE 187
FI + I + + DE
Sbjct: 232 FIDPKKIKVFVLDE 245
>GENEDB_PFALCIPARUM|PFD1070w [details] [associations]
symbol:PFD1070w "eukaryotic initiation factor,
putative" species:5833 "Plasmodium falciparum" [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 109 (43.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 30/99 (30%), Positives = 53/99 (53%)
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
MS++ I+ KFR + +L++T + GLD+Q LV+ +DLP + S+I GR+ R
Sbjct: 290 MSQSERDDIMLKFRQCKFRVLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGR 349
Query: 527 MPQSEYAF-LVDSGNQREL-DLIKNFSKEEDRMNREIMD 563
+ A V + + + L D+ + +S + D M I +
Sbjct: 350 FGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNITE 388
Score = 69 (29.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 34/137 (24%), Positives = 60/137 (43%)
Query: 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF-K 132
++I+ +G GKT V + L + R ++ I L+PT L +Q KV +
Sbjct: 56 DVILQSQSGTGKT--CVFAVGALNCVNRNLNETQVIILSPTRELAEQTQKVCLALADYIH 113
Query: 133 VRTFCG-GSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHA 191
V +C G K++ D + + V+ P + + L R +K + I L+ DE A
Sbjct: 114 VTIYCCIGGKKMSD--DIKALNNGVHVISGTPGRIYHMLNLRHLKCKYIKQLVIDE---A 168
Query: 192 QVKSNHPYAKIMKDFYK 208
N + + + D Y+
Sbjct: 169 DEMLNKGFKEQVYDIYR 185
>UNIPROTKB|Q8IFN9 [details] [associations]
symbol:PFD1070w "Eukaryotic initiation factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006446
"regulation of translational initiation" evidence=ISS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 109 (43.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 30/99 (30%), Positives = 53/99 (53%)
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
MS++ I+ KFR + +L++T + GLD+Q LV+ +DLP + S+I GR+ R
Sbjct: 290 MSQSERDDIMLKFRQCKFRVLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGR 349
Query: 527 MPQSEYAF-LVDSGNQREL-DLIKNFSKEEDRMNREIMD 563
+ A V + + + L D+ + +S + D M I +
Sbjct: 350 FGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNITE 388
Score = 69 (29.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 34/137 (24%), Positives = 60/137 (43%)
Query: 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF-K 132
++I+ +G GKT V + L + R ++ I L+PT L +Q KV +
Sbjct: 56 DVILQSQSGTGKT--CVFAVGALNCVNRNLNETQVIILSPTRELAEQTQKVCLALADYIH 113
Query: 133 VRTFCG-GSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHA 191
V +C G K++ D + + V+ P + + L R +K + I L+ DE A
Sbjct: 114 VTIYCCIGGKKMSD--DIKALNNGVHVISGTPGRIYHMLNLRHLKCKYIKQLVIDE---A 168
Query: 192 QVKSNHPYAKIMKDFYK 208
N + + + D Y+
Sbjct: 169 DEMLNKGFKEQVYDIYR 185
>UNIPROTKB|E2RR50 [details] [associations]
symbol:DDX19A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236 CTD:55308
EMBL:AAEX03004077 RefSeq:XP_536790.2 ProteinModelPortal:E2RR50
Ensembl:ENSCAFT00000032061 GeneID:479658 KEGG:cfa:479658
NextBio:20854805 Uniprot:E2RR50
Length = 478
Score = 95 (38.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 41/144 (28%), Positives = 71/144 (49%)
Query: 434 IVTARALSYILQNLKFLASWRCHFLV--GVNAGLKS--MSRNAMKSILEKFRSGELNLLV 489
I A+A+ I + + ASW L G L S M +++E+FR G+ +LV
Sbjct: 330 ITIAQAM--IFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 387
Query: 490 ATKVGEEGLDIQTCCLVIRFDLPETV------ASFIQSRGRA-RMPQSEYAF-LVDSGNQ 541
T V G+D++ +VI FDLP +++ GR R + A +VDS +
Sbjct: 388 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 447
Query: 542 RE-LDLIK-NFSKEEDRMNREIMD 563
L+ I+ +F+K+ +R++ + +D
Sbjct: 448 MNILNRIQEHFNKKIERLDTDDLD 471
Score = 86 (35.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 32/116 (27%), Positives = 55/116 (47%)
Query: 73 ENIIVYLGTGCGKTHIAVL-LIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL ++ + R PQ C+ L+PT L Q KVIE+ F
Sbjct: 131 QNLIAQSQSGTGKTAAFVLAMLSRVEPAERYPQ---CLCLSPTYELALQTGKVIEQMGKF 187
Query: 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
+ R + + ++I ++ V+ +L +C +FI + I + + DE
Sbjct: 188 HPELKLAYAVR-GNKLERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 242
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 116 (45.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQS---RGRARMPQSE 531
++L +FRSG +LVAT V GLD++ V+ +D P V ++ GRA
Sbjct: 443 NVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQA 502
Query: 532 YAFLVDSGNQRELDLIKNFSKEEDRMNREIMD 563
+ F D ++ DLIK R+ +I +
Sbjct: 503 FTFFGDQDSKHASDLIKILEGANQRVPPQIRE 534
Score = 67 (28.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 40/145 (27%), Positives = 61/145 (42%)
Query: 70 AME-ENIIVYLGTGCGKTHIAVLLIYELAHL--IRKPQKS--ICIFLAPTVALVQQ-QAK 123
AM+ +I+ TG GKT LI HL IR + + L+PT L Q Q +
Sbjct: 192 AMQGRDIVAIAKTGSGKT--LGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEE 249
Query: 124 VIEESIGFKVRTFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIA 181
++ ++ C GG+ + D E+ D ++V P L L R I + I+
Sbjct: 250 AVKFGRSSRISCTCLYGGAPKGPQLRDLERGAD---IVVATPGRLNDILEMRRISLRQIS 306
Query: 182 LLIFDECHHAQVKSNHPYA-KIMKD 205
L+ DE P KI+K+
Sbjct: 307 YLVLDEADRMLDMGFEPQIRKIVKE 331
>ZFIN|ZDB-GENE-031030-2 [details] [associations]
symbol:eif4a1a "eukaryotic translation initiation
factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
Uniprot:Q802C9
Length = 406
Score = 112 (44.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 47/167 (28%), Positives = 75/167 (44%)
Query: 397 IEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH 456
I V KE + KL L + T + Q ++F+N T R + ++ + K A
Sbjct: 251 INVEKEEW---KLDTLCDLYETLTITQ---AVIFIN---TRRKVDWLTE--KMHAR---D 296
Query: 457 FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
F V G M + I+++FRSG +L+ T + G+D+Q LVI +DLP
Sbjct: 297 FTVSALHG--DMEQKERDVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRE 354
Query: 517 SFIQSRGRA-RMPQSEYAFLV----DSGNQRELDLIKNFSKEEDRMN 558
++I GR R + A + D R+++ N + EE MN
Sbjct: 355 NYIHRIGRGGRFGRKGVAINMITEDDKRTLRDIETFYNTTVEEMPMN 401
Score = 66 (28.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 34/137 (24%), Positives = 61/137 (44%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTH-IAVLLIYELAHLIRKPQKSICIFLAP 113
P I ++ L C K + +I +G GKT A+ ++ ++ ++ Q + LAP
Sbjct: 55 PSAIQQRAILP-CIKGYD--VIAQAQSGTGKTATFAISILQQIDVELKATQAMV---LAP 108
Query: 114 TVALVQQQAKVIEESIGFKVRTF--CGGSKRLKSHCDWEK-EIDQYEVLVMIPQILLYCL 170
T L QQ KV+ + T C G +++ D +K + D ++V P + L
Sbjct: 109 TRELAQQIQKVVLALGDYMGATCHACIGGTNVRN--DVQKLQADVPHIVVGTPGRVFDML 166
Query: 171 YHRFIKMELIALLIFDE 187
R++ + I + DE
Sbjct: 167 NRRYLSPKYIKMFALDE 183
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 109 (43.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 43/156 (27%), Positives = 71/156 (45%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 260 KLDTLCDLYETLTITQ---AVIFLN---TRRKVDWLTE--KMHAR---DFTVSALHG--D 306
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 366
Query: 527 MPQSEYA--FLVDSGNQ--RELDLIKNFSKEEDRMN 558
+ A F+ + + R+++ N + EE MN
Sbjct: 367 FGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 402
Score = 69 (29.3 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 74 NIIVYLGTGCGKTH-IAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFK 132
++I +G GKT A+ ++ +L +++ Q + LAPT L QQ KVI +
Sbjct: 72 DVIAQAQSGTGKTATFAISILQQLEIDLKETQ---ALVLAPTRELAQQIQKVILALGDYM 128
Query: 133 VRTF--CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
T C G +++ + + + ++V P + L R++ + I + + DE
Sbjct: 129 GATCHACIGGTNVRNEMQ-KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 127 (49.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 48/170 (28%), Positives = 72/170 (42%)
Query: 426 KCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGEL 485
KCIVF A L++ L S++C L G +S+ + L FR G
Sbjct: 363 KCIVFTQTKRDADRLAFGLAK-----SYKCEALHG------DISQAQRERTLAGFRDGNF 411
Query: 486 NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAFLVDSGNQ-RE 543
++LVAT V GLD+ LVI ++LP +F+ GR R + A L+ +Q R
Sbjct: 412 SILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRA 471
Query: 544 LDLI-KNFSKEEDRMNREIMDRTSSDAFTCSEERIYKVDSSGACISAGYG 592
+ +I K + + ++R S+ F R G GYG
Sbjct: 472 VKMIEKEVGSRFNELPSIAVERGSASMFEGVGARSGGSFGGGRSGGGGYG 521
Score = 55 (24.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 26/85 (30%), Positives = 39/85 (45%)
Query: 63 QLELCKKAME-ENIIVYLGTGCGKT-HIAVLLIYELAHLIRKPQKSI---CIFLAPTVAL 117
Q + + AME ++I TG GKT + +I ++ K + C+ LAPT L
Sbjct: 143 QKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTREL 202
Query: 118 VQQQAKVIEESIGFKVRTFC--GGS 140
+Q K ES + T C GG+
Sbjct: 203 ARQVEKEFRESAP-SLDTICLYGGT 226
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 129 (50.5 bits), Expect = 0.00017, P = 0.00017
Identities = 43/150 (28%), Positives = 74/150 (49%)
Query: 415 ILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMK 474
+++T + + + +VF N+ T + LS L + C +L G M ++
Sbjct: 248 LVNTLKQEGVERTVVFANKRETVQYLSGKL----YAEELPCVWLEG------KMPQDKRN 297
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYA 533
+E+F+ GE+ +LVAT V GLDI VI FD+P V +I GR R + A
Sbjct: 298 KAIERFKKGEVKVLVATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTA 357
Query: 534 F-LVDSGNQRELDLIKNFSKEEDRMNREIM 562
LV++ + + I+ ++KE R++R +
Sbjct: 358 ISLVEAHDMGVIGKIERYTKE--RLSRRFI 385
>SGD|S000001212 [details] [associations]
symbol:DBP8 "ATPase, putative RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001212 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:U00027 GO:GO:0030686
GO:GO:0004004 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
OrthoDB:EOG4PP1RW PIR:S48908 RefSeq:NP_012039.1
ProteinModelPortal:P38719 SMR:P38719 DIP:DIP-5628N IntAct:P38719
MINT:MINT-485349 STRING:P38719 PaxDb:P38719 PeptideAtlas:P38719
EnsemblFungi:YHR169W GeneID:856574 KEGG:sce:YHR169W CYGD:YHR169w
GeneTree:ENSGT00700000105515 OMA:FRNLCAI NextBio:982426
Genevestigator:P38719 GermOnline:YHR169W GO:GO:0000480
Uniprot:P38719
Length = 431
Score = 129 (50.5 bits), Expect = 0.00017, P = 0.00017
Identities = 48/150 (32%), Positives = 73/150 (48%)
Query: 416 LSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS-MSRNAMK 474
L T ++ I+FVNR +TA L L+ L+ V V A L S M +
Sbjct: 246 LLTCEEYENKTAIIFVNRTMTAEILRRTLKQLE----------VRV-ASLHSQMPQQERT 294
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-ARMPQSEYA 533
+ L +FR+ +L+AT V GLDI T LV+ +D+P FI GR AR + A
Sbjct: 295 NSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDA 354
Query: 534 FLVDSGNQRELDLIKNFSKEEDRMNREIMD 563
+ QR++ I+ EDR+N+++ +
Sbjct: 355 --ISFVTQRDVSRIQAI---EDRINKKMTE 379
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 116 (45.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 32/83 (38%), Positives = 44/83 (53%)
Query: 469 SRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RM 527
+++ + IL F+SG++ LVAT + GLDI VI +DLP V +I GR R
Sbjct: 283 AQDIREKILNDFKSGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRA 342
Query: 528 PQSEYAF-LVDSGNQRELDLIKN 549
S A LV N REL I++
Sbjct: 343 GASGEAISLVSKDNFRELCAIES 365
Score = 61 (26.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 33/127 (25%), Positives = 57/127 (44%)
Query: 73 ENIIVYLGTGCGKTHIAVL-LIYELAHLIRKPQKSI------CIFLAPTVAL-VQQQAKV 124
++II TG GKT VL L+ +L ++ K + + L PT L VQ +A +
Sbjct: 39 KDIIAAAQTGTGKTASFVLPLLEQLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASI 98
Query: 125 IEESIGFKVRTFC--GG--SKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELI 180
+ + + + GG ++ K W +D +LV P LL + R + + +
Sbjct: 99 SQYAKYLDISSMAMYGGVDAQEQKQRLIWG--VD---ILVATPGRLLDMTHQRVLHFDEL 153
Query: 181 ALLIFDE 187
+L+ DE
Sbjct: 154 DMLVLDE 160
>UNIPROTKB|Q2TBP1 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9913 "Bos taurus" [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0033391
"chromatoid body" evidence=ISS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0007286 "spermatid
development" evidence=ISS] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0006417 GO:GO:0007286
GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q9UHL0
HOVERGEN:HBG107989 EMBL:BC109867 IPI:IPI00724449
RefSeq:NP_001033606.1 UniGene:Bt.14611 ProteinModelPortal:Q2TBP1
SMR:Q2TBP1 PRIDE:Q2TBP1 GeneID:508962 KEGG:bta:508962 CTD:29118
InParanoid:Q2TBP1 OrthoDB:EOG4NS3BD NextBio:20868762 Uniprot:Q2TBP1
Length = 483
Score = 98 (39.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 29/101 (28%), Positives = 47/101 (46%)
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA------SFIQSRGRA-RM 527
SI+++FR G+ +L+ T V G+D++ +V+ FDLP A +++ GR R
Sbjct: 379 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRF 438
Query: 528 PQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSD 568
+ AF N E+D + K +D N I D
Sbjct: 439 GKKGLAF-----NMIEVDKLPLLMKIQDHFNSSIKQLDPED 474
Score = 82 (33.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 32/119 (26%), Positives = 52/119 (43%)
Query: 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRK-PQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL + + ++ PQ C+ LAPT L Q +V+E F
Sbjct: 137 QNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQ---CLCLAPTYELALQTGRVVERMGKF 193
Query: 132 KVRT---FCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
V + R+ D K+I V+ +L +C + I + I + + DE
Sbjct: 194 CVDVQVMYAIRGNRIPRGTDVTKQI----VIGTPGTVLDWCFKRKLIDLTKIRVFVLDE 248
>UNIPROTKB|I3LC00 [details] [associations]
symbol:DDX19A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236
EMBL:CU929739 RefSeq:XP_003126917.1 Ensembl:ENSSSCT00000029799
GeneID:100524144 KEGG:ssc:100524144 Uniprot:I3LC00
Length = 478
Score = 94 (38.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 29/99 (29%), Positives = 55/99 (55%)
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETV------ASFIQSRGRA-RM 527
+++E+FR G+ +LV T V G+D++ +VI FDLP +++ GR R
Sbjct: 373 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 432
Query: 528 PQSEYAF-LVDSGNQRE-LDLIK-NFSKEEDRMNREIMD 563
+ A +VDS + L+ I+ +F+K+ +R++ + +D
Sbjct: 433 GKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
Score = 86 (35.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 32/116 (27%), Positives = 55/116 (47%)
Query: 73 ENIIVYLGTGCGKTHIAVL-LIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL ++ + R PQ C+ L+PT L Q KVIE+ F
Sbjct: 131 QNLIAQSQSGTGKTAAFVLAMLSRVEPAERYPQ---CLCLSPTYELALQTGKVIEQMGKF 187
Query: 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
+ R + + ++I ++ V+ +L +C +FI + I + + DE
Sbjct: 188 HPELKLAYAVR-GNKLERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 242
>TAIR|locus:2020078 [details] [associations]
symbol:EIF4A-2 "eif4a-2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006096 "glycolysis" evidence=RCA] [GO:0009651 "response to
salt stress" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005886 GO:GO:0009506
GO:GO:0005524 GO:GO:0005774 GO:GO:0046686 EMBL:AC005287
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 EMBL:X65053
EMBL:AF386923 EMBL:AF428462 EMBL:BT008504 EMBL:AK226344
EMBL:AY087965 IPI:IPI00522023 PIR:JC1453 RefSeq:NP_175829.1
UniGene:At.195 ProteinModelPortal:P41377 SMR:P41377 STRING:P41377
PaxDb:P41377 PRIDE:P41377 ProMEX:P41377 EnsemblPlants:AT1G54270.1
GeneID:841868 KEGG:ath:AT1G54270 GeneFarm:936 TAIR:At1g54270
InParanoid:P41377 OMA:QVVWEEN PhylomeDB:P41377
ProtClustDB:CLSN2679594 Genevestigator:P41377 GermOnline:AT1G54270
Uniprot:P41377
Length = 412
Score = 120 (47.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 47/170 (27%), Positives = 79/170 (46%)
Query: 397 IEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH 456
+ V KE + KL L + T + Q ++FVN T R + ++ ++ R H
Sbjct: 257 VNVEKEDW---KLETLCDLYETLAITQS---VIFVN---TRRKVDWLTDKMRS----RDH 303
Query: 457 FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
V+A M +N I+ +FRSG +L+ T + G+D+Q LVI FDLP
Sbjct: 304 T---VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPE 360
Query: 517 SFIQSRGRA-RMPQSEYAF-LVDSGNQREL-DLIKNFSKEEDRMNREIMD 563
+++ GR+ R + A V +QR L D+ K ++ + + + D
Sbjct: 361 NYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVEELPSNVAD 410
Score = 57 (25.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 32/137 (23%), Positives = 59/137 (43%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVL-LIYELAHLIRKPQKSICIFLAP 113
P I ++ + CK ++I +G GKT ++ +L + + + Q + LAP
Sbjct: 62 PSAIQQRGIVPFCKGL---DVIQQAQSGTGKTATFCSGVLQQLDYALLQCQ---ALVLAP 115
Query: 114 TVALVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCL 170
T L QQ KV+ + G KV GG+ + + + V+V P + L
Sbjct: 116 TRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGV---HVVVGTPGRVFDML 172
Query: 171 YHRFIKMELIALLIFDE 187
+ ++ + I + + DE
Sbjct: 173 RRQSLRPDCIKMFVLDE 189
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 101 (40.6 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 26/90 (28%), Positives = 41/90 (45%)
Query: 477 LEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASF---IQSRGRARMPQSEYA 533
++ F+ G++N+L+AT V GLDI V+ +D + S I GRA Y
Sbjct: 593 IQTFKEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYT 652
Query: 534 FLVDSGNQRELDLIKNFSKEEDRMNREIMD 563
+ +DLIKN + E++D
Sbjct: 653 LITPKDIHFSVDLIKNLESASQFVPPELID 682
Score = 93 (37.8 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 45/177 (25%), Positives = 80/177 (45%)
Query: 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKP--QKS---ICIFLAPTVALVQQ-QAKVIEE 127
++I TG GKT A + ++H++ +P +K I +FLAPT L Q + ++
Sbjct: 344 DLIAIAKTGSGKT--ATFIWPSISHIMDQPYLEKGDGPIALFLAPTRELAHQIYLETLKY 401
Query: 128 SIGFKVRT--FCGGSKRLKSHCDWEKEIDQ-YEVLVMIPQILLYCLYHRFIKMELIALLI 184
S FK++T GG + + C KE+ E++V P L+ + + K+ ++ L+
Sbjct: 402 SKYFKLKTTVLYGGVSK-QQQC---KELKAGCEIIVATPGRLIDMIKLKATKLNRVSYLV 457
Query: 185 FDECHHAQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSIN 241
DE P + + +PD + +F T P V + A + P I+
Sbjct: 458 LDEADKMFDFGFGPQVLSIVNHVRPDRQTL--LFSATFKPNVEEFARTILSDPIKIS 512
Score = 41 (19.5 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1055 GRHLFLLHDTVDEGELTRRRSNAVNNSN 1082
G LF ++T D E+ ++NN N
Sbjct: 748 GGRLFNPNNT-DNSEINNENEKSINNEN 774
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 123 (48.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 40/143 (27%), Positives = 62/143 (43%)
Query: 415 ILSTFRLQQHMKCIVFVNRIVTARALSYILQNLK--FLASWRCHFLVGVNAGLKSMSRNA 472
IL + + K + + I R + ++ K F+A++ C + + +
Sbjct: 492 ILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQRE 551
Query: 473 MKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSE 531
+ L FR G+ +LVAT V GLDI+ VI FDLP T+ ++ GR R +
Sbjct: 552 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 611
Query: 532 YA---FLVDSGNQRELDLIKNFS 551
A F DS N L+K S
Sbjct: 612 RAISFFDTDSDNHLAQPLVKVLS 634
Score = 60 (26.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 35/120 (29%), Positives = 55/120 (45%)
Query: 81 TGCGKTHIAVLLIYELAHLIR---------KPQKSICIFLAPTVALVQQ-QAKVIEESIG 130
TG GKT A L+ LAH++R + Q+ CI +APT L+ Q + + S G
Sbjct: 307 TGSGKT--AAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFG 364
Query: 131 FKVRTFC--GGSKRLKSHCDWEKEIDQ-YEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
VR GG++ H ++I Q +L P L+ + I ++ + L+ DE
Sbjct: 365 TCVRAVVIYGGTQF--GHS--VRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDE 420
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 109 (43.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 43/156 (27%), Positives = 71/156 (45%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 260 KLDTLCDLYETLTITQ---AVIFLN---TRRKVDWLTE--KMHAR---DFTVSALHG--D 306
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 366
Query: 527 MPQSEYA--FLVDSGNQ--RELDLIKNFSKEEDRMN 558
+ A F+ + + R+++ N + EE MN
Sbjct: 367 FGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 402
Score = 68 (29.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 74 NIIVYLGTGCGKTH-IAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFK 132
++I +G GKT A+ ++ +L ++ Q + LAPT L QQ KVI +
Sbjct: 72 DVIAQAQSGTGKTATFAISILQQLEIEFKETQ---ALVLAPTRELAQQIQKVILALGDYM 128
Query: 133 VRTF--CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
T C G +++ + + + ++V P + L R++ + I + + DE
Sbjct: 129 GATCHACIGGTNVRNEMQ-KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 109 (43.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 43/156 (27%), Positives = 71/156 (45%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 260 KLDTLCDLYETLTITQ---AVIFLN---TRRKVDWLTE--KMHAR---DFTVSALHG--D 306
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 366
Query: 527 MPQSEYA--FLVDSGNQ--RELDLIKNFSKEEDRMN 558
+ A F+ + + R+++ N + EE MN
Sbjct: 367 FGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 402
Score = 68 (29.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 74 NIIVYLGTGCGKTH-IAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFK 132
++I +G GKT A+ ++ +L ++ Q + LAPT L QQ KVI +
Sbjct: 72 DVIAQAQSGTGKTATFAISILQQLEIEFKETQ---ALVLAPTRELAQQIQKVILALGDYM 128
Query: 133 VRTF--CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
T C G +++ + + + ++V P + L R++ + I + + DE
Sbjct: 129 GATCHACIGGTNVRNEMQ-KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184
>UNIPROTKB|Q14240 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
"helicase activity" evidence=TAS] [GO:0006446 "regulation of
translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
translation initiation factor 4F complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
Length = 407
Score = 109 (43.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 43/156 (27%), Positives = 71/156 (45%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 260 KLDTLCDLYETLTITQ---AVIFLN---TRRKVDWLTE--KMHAR---DFTVSALHG--D 306
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 366
Query: 527 MPQSEYA--FLVDSGNQ--RELDLIKNFSKEEDRMN 558
+ A F+ + + R+++ N + EE MN
Sbjct: 367 FGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 402
Score = 68 (29.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 74 NIIVYLGTGCGKTH-IAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFK 132
++I +G GKT A+ ++ +L ++ Q + LAPT L QQ KVI +
Sbjct: 72 DVIAQAQSGTGKTATFAISILQQLEIEFKETQ---ALVLAPTRELAQQIQKVILALGDYM 128
Query: 133 VRTF--CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
T C G +++ + + + ++V P + L R++ + I + + DE
Sbjct: 129 GATCHACIGGTNVRNEMQ-KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184
>UNIPROTKB|A6M930 [details] [associations]
symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
Uniprot:A6M930
Length = 407
Score = 109 (43.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 43/156 (27%), Positives = 71/156 (45%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 260 KLDTLCDLYETLTITQ---AVIFLN---TRRKVDWLTE--KMHAR---DFTVSALHG--D 306
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 366
Query: 527 MPQSEYA--FLVDSGNQ--RELDLIKNFSKEEDRMN 558
+ A F+ + + R+++ N + EE MN
Sbjct: 367 FGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 402
Score = 68 (29.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 74 NIIVYLGTGCGKTH-IAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFK 132
++I +G GKT A+ ++ +L ++ Q + LAPT L QQ KVI +
Sbjct: 72 DVIAQAQSGTGKTATFAISILQQLEIEFKETQ---ALVLAPTRELAQQIQKVILALGDYM 128
Query: 133 VRTF--CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
T C G +++ + + + ++V P + L R++ + I + + DE
Sbjct: 129 GATCHACIGGTNVRNEMQ-KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184
>MGI|MGI:106906 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
GermOnline:ENSMUSG00000022884 Uniprot:P10630
Length = 407
Score = 109 (43.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 43/156 (27%), Positives = 71/156 (45%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 260 KLDTLCDLYETLTITQ---AVIFLN---TRRKVDWLTE--KMHAR---DFTVSALHG--D 306
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 366
Query: 527 MPQSEYA--FLVDSGNQ--RELDLIKNFSKEEDRMN 558
+ A F+ + + R+++ N + EE MN
Sbjct: 367 FGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 402
Score = 68 (29.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 74 NIIVYLGTGCGKTH-IAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFK 132
++I +G GKT A+ ++ +L ++ Q + LAPT L QQ KVI +
Sbjct: 72 DVIAQAQSGTGKTATFAISILQQLEIEFKETQ---ALVLAPTRELAQQIQKVILALGDYM 128
Query: 133 VRTF--CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
T C G +++ + + + ++V P + L R++ + I + + DE
Sbjct: 129 GATCHACIGGTNVRNEMQ-KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184
>RGD|1309225 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309225 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 EMBL:BC085859 IPI:IPI00193595
RefSeq:NP_001008336.1 UniGene:Rn.143972 ProteinModelPortal:Q5RKI1
SMR:Q5RKI1 STRING:Q5RKI1 PhosphoSite:Q5RKI1
World-2DPAGE:0004:Q5RKI1 PRIDE:Q5RKI1 GeneID:303831 KEGG:rno:303831
UCSC:RGD:1309225 InParanoid:Q5RKI1 NextBio:652169
ArrayExpress:Q5RKI1 Genevestigator:Q5RKI1
GermOnline:ENSRNOG00000001815 Uniprot:Q5RKI1
Length = 407
Score = 109 (43.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 43/156 (27%), Positives = 71/156 (45%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 260 KLDTLCDLYETLTITQ---AVIFLN---TRRKVDWLTE--KMHAR---DFTVSALHG--D 306
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 366
Query: 527 MPQSEYA--FLVDSGNQ--RELDLIKNFSKEEDRMN 558
+ A F+ + + R+++ N + EE MN
Sbjct: 367 FGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 402
Score = 68 (29.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 74 NIIVYLGTGCGKTH-IAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFK 132
++I +G GKT A+ ++ +L ++ Q + LAPT L QQ KVI +
Sbjct: 72 DVIAQAQSGTGKTATFAISILQQLEIEFKETQ---ALVLAPTRELAQQIQKVILALGDYM 128
Query: 133 VRTF--CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
T C G +++ + + + ++V P + L R++ + I + + DE
Sbjct: 129 GATCHACIGGTNVRNEMQ-KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184
>UNIPROTKB|F8WFX2 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
OMA:TENDARQ IPI:IPI00193595 ProteinModelPortal:F8WFX2 PRIDE:F8WFX2
Ensembl:ENSRNOT00000002484 Uniprot:F8WFX2
Length = 408
Score = 109 (43.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 43/156 (27%), Positives = 71/156 (45%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++F+N T R + ++ + K A F V G
Sbjct: 261 KLDTLCDLYETLTITQ---AVIFLN---TRRKVDWLTE--KMHAR---DFTVSALHG--D 307
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M + I+ +FRSG +L+ T + G+D+Q LVI +DLP ++I GR R
Sbjct: 308 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 367
Query: 527 MPQSEYA--FLVDSGNQ--RELDLIKNFSKEEDRMN 558
+ A F+ + + R+++ N + EE MN
Sbjct: 368 FGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 403
Score = 68 (29.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 74 NIIVYLGTGCGKTH-IAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFK 132
++I +G GKT A+ ++ +L ++ Q + LAPT L QQ KVI +
Sbjct: 73 DVIAQAQSGTGKTATFAISILQQLEIEFKETQ---ALVLAPTRELAQQIQKVILALGDYM 129
Query: 133 VRTF--CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
T C G +++ + + + ++V P + L R++ + I + + DE
Sbjct: 130 GATCHACIGGTNVRNEMQ-KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 185
>UNIPROTKB|B4DRZ7 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
UniGene:Hs.656037 HGNC:HGNC:25628 EMBL:AC012184 EMBL:AK299504
IPI:IPI01009735 SMR:B4DRZ7 STRING:B4DRZ7 Ensembl:ENST00000443119
UCSC:uc002eys.3 Uniprot:B4DRZ7
Length = 388
Score = 95 (38.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 41/144 (28%), Positives = 71/144 (49%)
Query: 434 IVTARALSYILQNLKFLASWRCHFLV--GVNAGLKS--MSRNAMKSILEKFRSGELNLLV 489
I A+A+ I + + ASW L G L S M +++E+FR G+ +LV
Sbjct: 240 ITIAQAM--IFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 297
Query: 490 ATKVGEEGLDIQTCCLVIRFDLPETV------ASFIQSRGRA-RMPQSEYAF-LVDSGNQ 541
T V G+D++ +VI FDLP +++ GR R + A +VDS +
Sbjct: 298 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 357
Query: 542 RE-LDLIK-NFSKEEDRMNREIMD 563
L+ I+ +F+K+ +R++ + +D
Sbjct: 358 MNILNRIQEHFNKKIERLDTDDLD 381
Score = 82 (33.9 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 73 ENIIVYLGTGCGKTHIAVL-LIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL ++ + R PQ C+ L+PT L Q KVIE+ F
Sbjct: 41 QNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQ---CLCLSPTYELALQTGKVIEQMGKF 97
Query: 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHRFIKMELIALLIFDE 187
+ R + + ++I + ++++ P +L +C +FI + I + + DE
Sbjct: 98 YPELKLAYAVR-GNKLERGQKISE-QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 152
>UNIPROTKB|I3L352 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:25628 EMBL:AC012184
Ensembl:ENST00000575878 Uniprot:I3L352
Length = 396
Score = 95 (38.5 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 41/144 (28%), Positives = 71/144 (49%)
Query: 434 IVTARALSYILQNLKFLASWRCHFLV--GVNAGLKS--MSRNAMKSILEKFRSGELNLLV 489
I A+A+ I + + ASW L G L S M +++E+FR G+ +LV
Sbjct: 248 ITIAQAM--IFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 305
Query: 490 ATKVGEEGLDIQTCCLVIRFDLPETV------ASFIQSRGRA-RMPQSEYAF-LVDSGNQ 541
T V G+D++ +VI FDLP +++ GR R + A +VDS +
Sbjct: 306 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 365
Query: 542 RE-LDLIK-NFSKEEDRMNREIMD 563
L+ I+ +F+K+ +R++ + +D
Sbjct: 366 MNILNRIQEHFNKKIERLDTDDLD 389
Score = 82 (33.9 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 73 ENIIVYLGTGCGKTHIAVL-LIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL ++ + R PQ C+ L+PT L Q KVIE+ F
Sbjct: 49 QNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQ---CLCLSPTYELALQTGKVIEQMGKF 105
Query: 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHRFIKMELIALLIFDE 187
+ R + + ++I + ++++ P +L +C +FI + I + + DE
Sbjct: 106 YPELKLAYAVR-GNKLERGQKISE-QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 160
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 109 (43.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 35/128 (27%), Positives = 62/128 (48%)
Query: 397 IEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH 456
IE++ P +K RL+ +L +L K ++FV T R + + L+ + W
Sbjct: 388 IEIVPTP---EKYNRLLTLLK--QLMDGSKILIFVE---TKRGCDQVTRQLR-MDGWPA- 437
Query: 457 FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
+ ++ G K+ S +L +F+SG ++ AT V GLD++ V+ +D P T+
Sbjct: 438 --LAIH-GDKTQSER--DRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLE 492
Query: 517 SFIQSRGR 524
+I GR
Sbjct: 493 DYIHRIGR 500
Score = 72 (30.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 36/138 (26%), Positives = 61/138 (44%)
Query: 81 TGCGKTHIAVLLIYELAHLIRKPQKS-----ICIFLAPTVAL-VQQQAKVIEESIGFKVR 134
TG GKT +A LL L H+ +P+ I + LAPT L VQ Q + + + VR
Sbjct: 211 TGSGKT-LAYLLP-ALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVR 268
Query: 135 TFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQ 192
+ C GG+ + D + + E+++ P L+ L + ++ + L+ DE
Sbjct: 269 STCIYGGAPKGPQIRDLRRGV---EIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRML 325
Query: 193 VKSNHPYAKIMKDFYKPD 210
P + + +PD
Sbjct: 326 DMGFEPQIRKIVSQIRPD 343
>UNIPROTKB|Q9UHL0 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007286 "spermatid development" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006406 "mRNA export from
nucleus" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0033391 "chromatoid body" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0006417 EMBL:CH471065
GO:GO:0007286 GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 CTD:29118 OrthoDB:EOG4NS3BD
EMBL:AF155140 EMBL:AY735312 EMBL:AY735301 EMBL:AY735302
EMBL:AY735303 EMBL:AY735304 EMBL:AY735305 EMBL:AY735306
EMBL:AY735307 EMBL:AY735308 EMBL:AY735309 EMBL:AY735310
EMBL:AY735311 EMBL:AK312772 EMBL:BC035388 EMBL:BC050360
IPI:IPI00296139 IPI:IPI00759454 RefSeq:NP_037396.3
UniGene:Hs.420263 PDB:2RB4 PDBsum:2RB4 ProteinModelPortal:Q9UHL0
SMR:Q9UHL0 STRING:Q9UHL0 PhosphoSite:Q9UHL0 DMDM:61222937
PaxDb:Q9UHL0 PRIDE:Q9UHL0 Ensembl:ENST00000263576 GeneID:29118
KEGG:hsa:29118 UCSC:uc001qcz.4 GeneCards:GC11P125773
HGNC:HGNC:18698 HPA:HPA020090 HPA:HPA020137 MIM:607663
neXtProt:NX_Q9UHL0 PharmGKB:PA38644 InParanoid:Q9UHL0 OMA:WHFAERI
PhylomeDB:Q9UHL0 ChiTaRS:DDX25 EvolutionaryTrace:Q9UHL0
GenomeRNAi:29118 NextBio:52207 ArrayExpress:Q9UHL0 Bgee:Q9UHL0
CleanEx:HS_DDX25 Genevestigator:Q9UHL0 GermOnline:ENSG00000109832
Uniprot:Q9UHL0
Length = 483
Score = 100 (40.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 28/101 (27%), Positives = 48/101 (47%)
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLP------ETVASFIQSRGRA-RM 527
SI+++FR G+ +L+ T V G+D++ +V+ FDLP +++ GR R
Sbjct: 379 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRF 438
Query: 528 PQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSD 568
+ AF N E+D + + K +D N I + D
Sbjct: 439 GKKGLAF-----NMIEVDELPSLMKIQDHFNSSIKQLNAED 474
Score = 79 (32.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 32/120 (26%), Positives = 53/120 (44%)
Query: 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRK-PQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL + + + PQ C+ LAPT L Q +V+E+ F
Sbjct: 137 QNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQ---CLCLAPTYELALQTGRVVEQMGKF 193
Query: 132 KVRT---FCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHRFIKMELIALLIFDE 187
V + R+ D K+I ++ P +L +C + I + I + + DE
Sbjct: 194 CVDVQVMYAIRGNRIPRGTDITKQI-----IIGTPGTVLDWCFKLKLIDLTKIRVFVLDE 248
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 107 (42.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 43/146 (29%), Positives = 67/146 (45%)
Query: 422 QQHMK-CIVFVN-RIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEK 479
Q+ +K IVFV R V + +LQ A C F+ G M + L +
Sbjct: 242 QEDVKRAIVFVKTRDVVSSLEGQLLQ-----AGIPCAFMRG------DMEQKKRFQALSR 290
Query: 480 FRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF-LVD 537
F GE+N+L+AT V G+DI VI FD+P + ++I GR R A L +
Sbjct: 291 FTKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAE 350
Query: 538 SGNQRELDLIKNFSKEEDRMNREIMD 563
+ + R + I+ + E + R I++
Sbjct: 351 AHDMRIVGKIERYI--EQPLKRRIIE 374
Score = 70 (29.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 38/133 (28%), Positives = 54/133 (40%)
Query: 63 QLELCKKAMEE-NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQK----SICIFLAPTVAL 117
Q E A+E+ +I+ TG GKT A L+ L HLI P++ + + L PT L
Sbjct: 28 QQETLPHALEQRDILARAPTGTGKT--ASFLLPALQHLIDFPRRYSGQARVLILTPTREL 85
Query: 118 VQQ---QAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF 174
Q A + G + GG + ID +LV P L+ L
Sbjct: 86 ASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKGNID---ILVATPGRLMEYLDKGK 142
Query: 175 IKMELIALLIFDE 187
E + +LI DE
Sbjct: 143 FSAESVDILIIDE 155
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 107 (42.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 43/146 (29%), Positives = 67/146 (45%)
Query: 422 QQHMK-CIVFVN-RIVTARALSYILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEK 479
Q+ +K IVFV R V + +LQ A C F+ G M + L +
Sbjct: 242 QEDVKRAIVFVKTRDVVSSLEGQLLQ-----AGIPCAFMRG------DMEQKKRFQALSR 290
Query: 480 FRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF-LVD 537
F GE+N+L+AT V G+DI VI FD+P + ++I GR R A L +
Sbjct: 291 FTKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAE 350
Query: 538 SGNQRELDLIKNFSKEEDRMNREIMD 563
+ + R + I+ + E + R I++
Sbjct: 351 AHDMRIVGKIERYI--EQPLKRRIIE 374
Score = 70 (29.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 38/133 (28%), Positives = 54/133 (40%)
Query: 63 QLELCKKAMEE-NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQK----SICIFLAPTVAL 117
Q E A+E+ +I+ TG GKT A L+ L HLI P++ + + L PT L
Sbjct: 28 QQETLPHALEQRDILARAPTGTGKT--ASFLLPALQHLIDFPRRYSGQARVLILTPTREL 85
Query: 118 VQQ---QAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRF 174
Q A + G + GG + ID +LV P L+ L
Sbjct: 86 ASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKGNID---ILVATPGRLMEYLDKGK 142
Query: 175 IKMELIALLIFDE 187
E + +LI DE
Sbjct: 143 FSAESVDILIIDE 155
>UNIPROTKB|Q5H9U9 [details] [associations]
symbol:DDX60L "Probable ATP-dependent RNA helicase
DDX60-like" species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 HOGENOM:HOG000169263 HOVERGEN:HBG107797
EMBL:AL832950 EMBL:CR933601 EMBL:AC079926 EMBL:AC093888
EMBL:AK055595 IPI:IPI00853133 IPI:IPI00935252 RefSeq:NP_001012985.1
UniGene:Hs.535011 ProteinModelPortal:Q5H9U9 STRING:Q5H9U9
PhosphoSite:Q5H9U9 DMDM:74755482 PaxDb:Q5H9U9 PRIDE:Q5H9U9
Ensembl:ENST00000260184 Ensembl:ENST00000505890
Ensembl:ENST00000511577 GeneID:91351 KEGG:hsa:91351 UCSC:uc003irq.4
CTD:91351 GeneCards:GC04M169277 HGNC:HGNC:26429 HPA:HPA043211
neXtProt:NX_Q5H9U9 PharmGKB:PA162383445 InParanoid:Q5H9U9
OMA:AQDSVYL GenomeRNAi:91351 NextBio:77184 ArrayExpress:Q5H9U9
Bgee:Q5H9U9 CleanEx:HS_DDX60L Genevestigator:Q5H9U9 Uniprot:Q5H9U9
Length = 1706
Score = 120 (47.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 40/151 (26%), Positives = 71/151 (47%)
Query: 49 QKTDKDPKQ---IARKYQLELCKKA-MEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQ 104
++ D+DP+ I +Q EL E+ ++ T GKT+ + Y + ++R+
Sbjct: 731 ERKDRDPRVQDFIPNAWQQELLDVVDKNESAVIVAPTSSGKTYASY---YCMEKVLRESD 787
Query: 105 KSICIFLAPTVALVQQQAKVIEESIGFKV---RTFCGGSKRLKSHCDWEKEIDQYEVLVM 161
+ +++AP +LV Q A +E + RT CG R D+ + +VL+
Sbjct: 788 VGVVVYVAPAKSLVGQVAATVENRFTKTLPAGRTLCGAFTR-----DYCHNVLNCQVLIT 842
Query: 162 IPQI--LLYCLYHRFIKMELIALLIFDECHH 190
+P+ +L HR +E I +IFDE H+
Sbjct: 843 VPECFEILLLAPHRQKWVERIRYVIFDEVHY 873
Score = 71 (30.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 44/169 (26%), Positives = 78/169 (46%)
Query: 284 SYV-TCSEQLAEIKREQYISALSRKLHDHQSLRNTTKQLNRLHDSMKFCLENLGVCGALH 342
SYV E L ++++ Q +++K + ++ + K++ R + + F LENL + L
Sbjct: 1145 SYVFAIDEVLEKVRKTQ--KRITKK-NPKKAEKLERKKVYRA-EYINF-LENLKI---LE 1196
Query: 343 ASYILLSGD-ETMRNELIEAEGNTIDDSL--CRFASQASEVFAAICRRDGIASDLSCIEV 399
S D + + E+ + +T++ L RF E+ A+ +R GI S +
Sbjct: 1197 ISEDCTYADVKALHTEITRNKDSTLERVLPRVRFTRHGKEL-KALAQR-GIGYHHSSMYF 1254
Query: 400 LKEPF----FSKKLLRLIGILSTFRLQQHMKC--IVFVNRIVTARALSY 442
++ F F K L+R++ T L HM C +VF V AL+Y
Sbjct: 1255 KEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVFAQDSVYLDALNY 1303
>ZFIN|ZDB-GENE-040120-6 [details] [associations]
symbol:eif4a1b "eukaryotic translation initiation
factor 4A, isoform 1B" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040120-6 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 OrthoDB:EOG4640C1 EMBL:BC153507
IPI:IPI00509685 UniGene:Dr.104803 ProteinModelPortal:A8E590
SMR:A8E590 STRING:A8E590 ArrayExpress:A8E590 Uniprot:A8E590
Length = 429
Score = 111 (44.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 48/167 (28%), Positives = 75/167 (44%)
Query: 397 IEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH 456
I V KE + KL L + T + Q ++F+N T R + ++ + K A
Sbjct: 274 INVEKEEW---KLDTLCDLYETLTITQ---AVIFIN---TRRKVDWLTE--KMHAR---D 319
Query: 457 FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
F V G M + I+ +FRSG +L+ T + G+D+Q LVI +DLP
Sbjct: 320 FTVSALHG--DMDQKDRDLIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRE 377
Query: 517 SFIQSRGRA-RMPQSEYAF-LV---DSGNQRELDLIKNFSKEEDRMN 558
++I GR R + A +V D R+++ N + EE MN
Sbjct: 378 NYIHRIGRGGRFGRKGVAINMVTEDDKRTLRDIETFYNTTVEEMPMN 424
Score = 66 (28.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 32/135 (23%), Positives = 58/135 (42%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
P I ++ L C K + +I +G GKT + I + + K +++ LAPT
Sbjct: 78 PSAIQQRAILP-CIKGYD--VIAQAQSGTGKTATFAISILQQIDIELKGTQALV--LAPT 132
Query: 115 VALVQQQAKVIEESIGFKVRTF--CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH 172
L QQ KVI + T C G +++ + + + ++V P + L
Sbjct: 133 RELAQQIQKVILALGDYMGATCHACIGGTNVRNEVQ-KLQAEAPHIVVGTPGRVYDMLNR 191
Query: 173 RFIKMELIALLIFDE 187
+F+ + I + + DE
Sbjct: 192 KFLSSKYIKMFVLDE 206
>UNIPROTKB|E9PTL9 [details] [associations]
symbol:Ddx19b "Protein Ddx19b" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1593382 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00959699
Ensembl:ENSRNOT00000059034 ArrayExpress:E9PTL9 Uniprot:E9PTL9
Length = 482
Score = 95 (38.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 41/144 (28%), Positives = 71/144 (49%)
Query: 434 IVTARALSYILQNLKFLASWRCHFLV--GVNAGLKS--MSRNAMKSILEKFRSGELNLLV 489
I A+A+ I + + ASW L G L S M +++E+FR G+ +LV
Sbjct: 334 ITIAQAM--IFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 391
Query: 490 ATKVGEEGLDIQTCCLVIRFDLPETV------ASFIQSRGRA-RMPQSEYAF-LVDSGNQ 541
T V G+D++ +VI FDLP +++ GR R + A +VDS +
Sbjct: 392 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 451
Query: 542 RE-LDLIK-NFSKEEDRMNREIMD 563
L+ I+ +F+K+ +R++ + +D
Sbjct: 452 MNILNRIQEHFNKKIERLDTDDLD 475
Score = 84 (34.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 35/135 (25%), Positives = 64/135 (47%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVL-LIYELAHLIRKPQKSICIFLAP 113
P +I ++ L L +N+I +G GKT VL ++ + R PQ C+ L+P
Sbjct: 118 PSKI-QENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPADRHPQ---CLCLSP 173
Query: 114 TVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYH 172
T L Q KVIE+ F + R + + +++ + ++++ P +L +C
Sbjct: 174 TYELALQTGKVIEQMGKFHPELKLAYAVR-GNKLERGQKVGE-QIVIGTPGTVLDWCSKL 231
Query: 173 RFIKMELIALLIFDE 187
+FI + I + + DE
Sbjct: 232 KFIDPKKIKVFVLDE 246
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 105 (42.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 476 ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF 534
I+++FRSG +L+AT + G+D+Q LVI +DLP ++I GR R + A
Sbjct: 304 IMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAI 363
Query: 535 -LVDSGNQRELDLIKNF-SKEEDRMNREIMD 563
V + + R + I+ F S + + M + D
Sbjct: 364 NFVTADDVRMMREIEQFYSTQIEEMPMNVAD 394
Score = 71 (30.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 32/115 (27%), Positives = 52/115 (45%)
Query: 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFKV 133
++I +G GKT A I L + ++ + LAPT L QQ KV+ +IG +
Sbjct: 62 DVIAQAQSGTGKT--ATFSISVLQKIDTNVKQCQALILAPTRELAQQIQKVVV-AIGDFM 118
Query: 134 RTFCGGSKRLKSHCDWEKEI-DQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
C S D K + D +V+V P + + RF+K + + + + DE
Sbjct: 119 NIECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDGMKMFVLDE 173
>TAIR|locus:2030285 [details] [associations]
symbol:AT1G72730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009505
"plant-type cell wall" evidence=IDA] [GO:0005774 "vacuolar
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0009744 "response
to sucrose stimulus" evidence=RCA] [GO:0009749 "response to glucose
stimulus" evidence=RCA] [GO:0009750 "response to fructose stimulus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005774
GO:GO:0009505 GO:GO:0003743 EMBL:AC010926 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
ProtClustDB:CLSN2679594 EMBL:AJ010472 EMBL:AY060592 EMBL:AY142066
EMBL:AY088176 IPI:IPI00526542 PIR:B96752 PIR:T51347
RefSeq:NP_177417.1 UniGene:At.22983 ProteinModelPortal:Q9CAI7
SMR:Q9CAI7 IntAct:Q9CAI7 STRING:Q9CAI7 PaxDb:Q9CAI7 PRIDE:Q9CAI7
EnsemblPlants:AT1G72730.1 GeneID:843605 KEGG:ath:AT1G72730
GeneFarm:940 TAIR:At1g72730 InParanoid:Q9CAI7 OMA:AVINYHI
PhylomeDB:Q9CAI7 Genevestigator:Q9CAI7 GermOnline:AT1G72730
Uniprot:Q9CAI7
Length = 414
Score = 116 (45.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 41/145 (28%), Positives = 69/145 (47%)
Query: 408 KLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGLKS 467
KL L + T + Q ++FVN T R + ++ ++ R H V+A
Sbjct: 267 KLETLCDLYETLAITQS---VIFVN---TRRKVDWLTDKMRS----RDHT---VSATHGD 313
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M +N I+ +FRSG +L+ T + G+D+Q LVI FDLP +++ GR+ R
Sbjct: 314 MDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGR 373
Query: 527 MPQSEYAF-LVDSGNQRELDLIKNF 550
+ A + S ++R + I+ F
Sbjct: 374 FGRKGVAINFMTSEDERMMADIQRF 398
Score = 60 (26.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 32/136 (23%), Positives = 56/136 (41%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
P I ++ + CK ++I +G GKT A L L + + LAPT
Sbjct: 64 PSAIQQRGIIPFCKGL---DVIQQAQSGTGKT--ATFCSGVLQQLDISLVQCQALVLAPT 118
Query: 115 VALVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY 171
L QQ KV+ + +G K + GG+ + + + V+V P + L
Sbjct: 119 RELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGV---HVVVGTPGRVFDLLR 175
Query: 172 HRFIKMELIALLIFDE 187
+ ++ + I + + DE
Sbjct: 176 RQSLRADAIKMFVLDE 191
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 114 (45.2 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 458 LVGVNAGL--KSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETV 515
L G++AG+ ++ A +L+ F++G+L +LVAT V GLDIQ LVI +LP
Sbjct: 263 LDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLVINLELPFLA 322
Query: 516 ASFIQSRGR 524
++ GR
Sbjct: 323 EDYVHRIGR 331
Score = 63 (27.2 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 55/250 (22%), Positives = 99/250 (39%)
Query: 56 KQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKP-QKSI--CIFLA 112
+Q+ + Q + + ++I+ TG GKT L + E L KP K + + +
Sbjct: 22 QQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLE--QLAAKPADKPLLRALVMT 79
Query: 113 PTVAL-VQQQAKVIEESIGFKVRTFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYC 169
PT L +Q A + + S ++T GG+ E+ +D +LV P L
Sbjct: 80 PTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVD---ILVATPGRLFDI 136
Query: 170 LYHRFIKMELIALLIFDECHHA-QVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGK 228
+ + + + L+ DE + K+ K P + +F T S V +
Sbjct: 137 IGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKV-KRLIAP--VHQTMLFSATYSDAVKQ 193
Query: 229 GASAQANLPKSINSLENL----LDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSS 284
+ N P+ +N EN ++ VY V+ E + S +V + V+ S+
Sbjct: 194 LSHKMLNQPQWVNVAENTTASTVEQLVYRVDKRRKAE--LLSELVGRNNWRQVLVFASTK 251
Query: 285 YVTCSEQLAE 294
C+E L +
Sbjct: 252 --ECAEHLLQ 259
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 114 (45.2 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 458 LVGVNAGL--KSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETV 515
L G++AG+ ++ A +L+ F++G+L +LVAT V GLDIQ LVI +LP
Sbjct: 263 LDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLVINLELPFLA 322
Query: 516 ASFIQSRGR 524
++ GR
Sbjct: 323 EDYVHRIGR 331
Score = 63 (27.2 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 55/250 (22%), Positives = 99/250 (39%)
Query: 56 KQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKP-QKSI--CIFLA 112
+Q+ + Q + + ++I+ TG GKT L + E L KP K + + +
Sbjct: 22 QQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLE--QLAAKPADKPLLRALVMT 79
Query: 113 PTVAL-VQQQAKVIEESIGFKVRTFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYC 169
PT L +Q A + + S ++T GG+ E+ +D +LV P L
Sbjct: 80 PTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVD---ILVATPGRLFDI 136
Query: 170 LYHRFIKMELIALLIFDECHHA-QVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGK 228
+ + + + L+ DE + K+ K P + +F T S V +
Sbjct: 137 IGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKV-KRLIAP--VHQTMLFSATYSDAVKQ 193
Query: 229 GASAQANLPKSINSLENL----LDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSS 284
+ N P+ +N EN ++ VY V+ E + S +V + V+ S+
Sbjct: 194 LSHKMLNQPQWVNVAENTTASTVEQLVYRVDKRRKAE--LLSELVGRNNWRQVLVFASTK 251
Query: 285 YVTCSEQLAE 294
C+E L +
Sbjct: 252 --ECAEHLLQ 259
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 120 (47.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 39/143 (27%), Positives = 64/143 (44%)
Query: 415 ILSTFRLQQHMKCIVFVNRIVTARALSYILQNLK--FLASWRCHFLVGVNAGLKSMSRNA 472
IL + + K + + I R + ++ K F+A++ C + + +
Sbjct: 521 ILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQRE 580
Query: 473 MKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSE 531
+ L FR G+ +LVAT V GLDI+ VI FDLP T+ ++ GR R +
Sbjct: 581 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 640
Query: 532 YA---FLVDSGNQRELDLIKNFS 551
A F ++S +Q L+K S
Sbjct: 641 RAISFFDLESDSQLAQPLVKVLS 663
Score = 62 (26.9 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 35/140 (25%), Positives = 61/140 (43%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIR---------KPQKSICIF 110
+KY + + + + ++ TG GKT A L+ LAH++R + Q+ CI
Sbjct: 317 QKYSIPIIQGGRD--LMACAQTGSGKT--AAFLLPILAHMMRDGITASRFKELQEPECII 372
Query: 111 LAPTVALVQQ-QAKVIEESIGFKVRTFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILL 167
+APT L+ Q + + S G VR GG++ H + + +L P L+
Sbjct: 373 VAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQL--GH-SIRQIVQGCNILCATPGRLM 429
Query: 168 YCLYHRFIKMELIALLIFDE 187
+ I + + L+ DE
Sbjct: 430 DVIGKEKIGLRQVKYLVLDE 449
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 120 (47.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 39/143 (27%), Positives = 64/143 (44%)
Query: 415 ILSTFRLQQHMKCIVFVNRIVTARALSYILQNLK--FLASWRCHFLVGVNAGLKSMSRNA 472
IL + + K + + I R + ++ K F+A++ C + + +
Sbjct: 521 ILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQRE 580
Query: 473 MKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSE 531
+ L FR G+ +LVAT V GLDI+ VI FDLP T+ ++ GR R +
Sbjct: 581 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 640
Query: 532 YA---FLVDSGNQRELDLIKNFS 551
A F ++S +Q L+K S
Sbjct: 641 RAISFFDLESDSQLAQPLVKVLS 663
Score = 62 (26.9 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 35/140 (25%), Positives = 61/140 (43%)
Query: 60 RKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIR---------KPQKSICIF 110
+KY + + + + ++ TG GKT A L+ LAH++R + Q+ CI
Sbjct: 317 QKYSIPIIQGGRD--LMACAQTGSGKT--AAFLLPILAHMMRDGITASRFKELQEPECII 372
Query: 111 LAPTVALVQQ-QAKVIEESIGFKVRTFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILL 167
+APT L+ Q + + S G VR GG++ H + + +L P L+
Sbjct: 373 VAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQL--GH-SIRQIVQGCNILCATPGRLM 429
Query: 168 YCLYHRFIKMELIALLIFDE 187
+ I + + L+ DE
Sbjct: 430 DVIGKEKIGLRQVKYLVLDE 449
>UNIPROTKB|Q71YU6 [details] [associations]
symbol:LMOf2365_1746 "Helicase domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017262
GenomeReviews:AE017262_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:YP_014341.1 ProteinModelPortal:Q71YU6
STRING:Q71YU6 GeneID:2799880 KEGG:lmf:LMOf2365_1746 PATRIC:20324779
HOGENOM:HOG000268811 OMA:MTIATPF ProtClustDB:CLSK564571
Uniprot:Q71YU6
Length = 442
Score = 101 (40.6 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 27/90 (30%), Positives = 43/90 (47%)
Query: 463 AGLKS-MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQS 521
AG+ + + K L+ F+ G L L+ T V GLDI+ VI +DL + +
Sbjct: 263 AGIHGEIRKEKRKKYLDDFKKGTLTYLIVTDVAARGLDIEDLPYVIHYDLAASEKEYTHR 322
Query: 522 RGRA-RMPQSEYAFLVDSGNQRELDLIKNF 550
GR RM +S ++ N RE+ +K +
Sbjct: 323 SGRTGRMGKS--GTVITFANPREIRTLKQY 350
Score = 76 (31.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 35/118 (29%), Positives = 51/118 (43%)
Query: 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEE---SIG 130
+++ TG GKT L E I K Q + LAP+ LV Q +VI S
Sbjct: 38 DVLAVSPTGTGKTVAYALPTLEKIEAIPKTQ---WLVLAPSHELVMQITEVIRSWLPSDE 94
Query: 131 FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDEC 188
V + GG+ +K + K+ Q ++V P L + + IKM I + DEC
Sbjct: 95 LTVISLIGGAN-VKRQIEKLKKKPQ--IIVASPGRALELIKQKKIKMHEIKTITLDEC 149
>MGI|MGI:99526 [details] [associations]
symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0006917 "induction of apoptosis"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:99526
GO:GO:0005524 GO:GO:0005737 GO:GO:0015031 GO:GO:0031965
GO:GO:0005643 GO:GO:0003723 EMBL:CH466525 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236 CTD:55308
HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:L25125 EMBL:AK049467
EMBL:AK146548 EMBL:BC011270 IPI:IPI00123651 PIR:I49731
RefSeq:NP_031942.2 UniGene:Mm.287901 ProteinModelPortal:Q61655
SMR:Q61655 IntAct:Q61655 PhosphoSite:Q61655
REPRODUCTION-2DPAGE:Q61655 PaxDb:Q61655 PRIDE:Q61655
Ensembl:ENSMUST00000040416 GeneID:13680 KEGG:mmu:13680
InParanoid:Q543M2 ChiTaRS:DDX19A NextBio:284434 Bgee:Q61655
CleanEx:MM_DDX19A Genevestigator:Q61655
GermOnline:ENSMUSG00000015023 Uniprot:Q61655
Length = 478
Score = 95 (38.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 41/144 (28%), Positives = 71/144 (49%)
Query: 434 IVTARALSYILQNLKFLASWRCHFLV--GVNAGLKS--MSRNAMKSILEKFRSGELNLLV 489
I A+A+ I + + ASW L G L S M +++E+FR G+ +LV
Sbjct: 330 ITIAQAM--IFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 387
Query: 490 ATKVGEEGLDIQTCCLVIRFDLPETV------ASFIQSRGRA-RMPQSEYAF-LVDSGNQ 541
T V G+D++ +VI FDLP +++ GR R + A +VDS +
Sbjct: 388 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 447
Query: 542 RE-LDLIK-NFSKEEDRMNREIMD 563
L+ I+ +F+K+ +R++ + +D
Sbjct: 448 MNILNRIQEHFNKKIERLDTDDLD 471
Score = 83 (34.3 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 73 ENIIVYLGTGCGKTHIAVL-LIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL ++ + R PQ C+ L+PT L Q KVIE+ F
Sbjct: 131 QNLIAQSQSGTGKTAAFVLAMLSRVEPADRYPQ---CLCLSPTYELALQTGKVIEQMGKF 187
Query: 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHRFIKMELIALLIFDE 187
+ R + + +++ + ++++ P +L +C +FI + I + + DE
Sbjct: 188 HPELKLAYAVR-GNKLERGQKVSE-QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 242
>RGD|1303136 [details] [associations]
symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010043
"response to zinc ion" evidence=IEP] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1303136 RGD:1593382 GO:GO:0005524 GO:GO:0006917
GO:GO:0010043 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
CTD:55308 HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:BC079094
IPI:IPI00476885 RefSeq:NP_001005381.2 UniGene:Rn.228949 SMR:Q68FX3
Ensembl:ENSRNOT00000024793 GeneID:292022 KEGG:rno:292022
UCSC:RGD:1303136 NextBio:633623 Genevestigator:Q68FX3
Uniprot:Q68FX3
Length = 478
Score = 95 (38.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 41/144 (28%), Positives = 71/144 (49%)
Query: 434 IVTARALSYILQNLKFLASWRCHFLV--GVNAGLKS--MSRNAMKSILEKFRSGELNLLV 489
I A+A+ I + + ASW L G L S M +++E+FR G+ +LV
Sbjct: 330 ITIAQAM--IFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 387
Query: 490 ATKVGEEGLDIQTCCLVIRFDLPETV------ASFIQSRGRA-RMPQSEYAF-LVDSGNQ 541
T V G+D++ +VI FDLP +++ GR R + A +VDS +
Sbjct: 388 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 447
Query: 542 RE-LDLIK-NFSKEEDRMNREIMD 563
L+ I+ +F+K+ +R++ + +D
Sbjct: 448 MNILNRIQEHFNKKIERLDTDDLD 471
Score = 83 (34.3 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 73 ENIIVYLGTGCGKTHIAVL-LIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL ++ + R PQ C+ L+PT L Q KVIE+ F
Sbjct: 131 QNLIAQSQSGTGKTAAFVLAMLSRVEPADRHPQ---CLCLSPTYELALQTGKVIEQMGKF 187
Query: 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHRFIKMELIALLIFDE 187
+ R + + +++ + ++++ P +L +C +FI + I + + DE
Sbjct: 188 HPELKLAYAVR-GNKLERGQKVGE-QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 242
>RGD|1593382 [details] [associations]
symbol:Ddx19b "DEAD (Asp-Glu-Ala-As) box polypeptide 19B"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1303136 RGD:1593382 GO:GO:0005524
GO:GO:0006917 GO:GO:0010043 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
CTD:55308 HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:BC079094
IPI:IPI00476885 RefSeq:NP_001005381.2 UniGene:Rn.228949 SMR:Q68FX3
Ensembl:ENSRNOT00000024793 GeneID:292022 KEGG:rno:292022
UCSC:RGD:1303136 NextBio:633623 Genevestigator:Q68FX3
Uniprot:Q68FX3
Length = 478
Score = 95 (38.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 41/144 (28%), Positives = 71/144 (49%)
Query: 434 IVTARALSYILQNLKFLASWRCHFLV--GVNAGLKS--MSRNAMKSILEKFRSGELNLLV 489
I A+A+ I + + ASW L G L S M +++E+FR G+ +LV
Sbjct: 330 ITIAQAM--IFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 387
Query: 490 ATKVGEEGLDIQTCCLVIRFDLPETV------ASFIQSRGRA-RMPQSEYAF-LVDSGNQ 541
T V G+D++ +VI FDLP +++ GR R + A +VDS +
Sbjct: 388 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 447
Query: 542 RE-LDLIK-NFSKEEDRMNREIMD 563
L+ I+ +F+K+ +R++ + +D
Sbjct: 448 MNILNRIQEHFNKKIERLDTDDLD 471
Score = 83 (34.3 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 73 ENIIVYLGTGCGKTHIAVL-LIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL ++ + R PQ C+ L+PT L Q KVIE+ F
Sbjct: 131 QNLIAQSQSGTGKTAAFVLAMLSRVEPADRHPQ---CLCLSPTYELALQTGKVIEQMGKF 187
Query: 132 KVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHRFIKMELIALLIFDE 187
+ R + + +++ + ++++ P +L +C +FI + I + + DE
Sbjct: 188 HPELKLAYAVR-GNKLERGQKVGE-QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 242
>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
symbol:PF14_0655 "RNA helicase-1, putative"
species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 112 (44.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 476 ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF 534
I+ +FRSG +LV T + G+D+Q LVI +DLP + ++I GR+ R + A
Sbjct: 304 IMREFRSGSTRVLVTTDLLARGIDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAI 363
Query: 535 LVDSGNQRELDLIKN----FSKEEDRMNREIMD 563
+ + +E D +K +S + + M E+ D
Sbjct: 364 NFVTNDDKEKDKLKKIESYYSTQIEEMPLEVAD 396
Score = 63 (27.2 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 40/137 (29%), Positives = 63/137 (45%)
Query: 81 TGCGKTHIAVLLIYELAHLIRKPQKSI-CIFLAPTVALVQQQAKVIEESIG--FKVRTF- 136
+G GKT A +I L LI + + LAPT L QQ KV+ ++G KV+
Sbjct: 69 SGTGKT--ATFVISSL-QLINYDYVACQALILAPTRELAQQIQKVVL-ALGDYLKVKCHA 124
Query: 137 CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSN 196
C G ++ D K+ ++V P + + R + ++ + L I DE ++ S
Sbjct: 125 CVGGTVVREDIDKLKQ--GVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEAD--EMLSR 180
Query: 197 HPYAKIMKDFYK--PDI 211
A+I + F K PDI
Sbjct: 181 GFKAQIYEVFKKLVPDI 197
>UNIPROTKB|Q8IKF0 [details] [associations]
symbol:H45 "Helicase 45" species:36329 "Plasmodium
falciparum 3D7" [GO:0006446 "regulation of translational
initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 112 (44.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 476 ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAF 534
I+ +FRSG +LV T + G+D+Q LVI +DLP + ++I GR+ R + A
Sbjct: 304 IMREFRSGSTRVLVTTDLLARGIDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAI 363
Query: 535 LVDSGNQRELDLIKN----FSKEEDRMNREIMD 563
+ + +E D +K +S + + M E+ D
Sbjct: 364 NFVTNDDKEKDKLKKIESYYSTQIEEMPLEVAD 396
Score = 63 (27.2 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 40/137 (29%), Positives = 63/137 (45%)
Query: 81 TGCGKTHIAVLLIYELAHLIRKPQKSI-CIFLAPTVALVQQQAKVIEESIG--FKVRTF- 136
+G GKT A +I L LI + + LAPT L QQ KV+ ++G KV+
Sbjct: 69 SGTGKT--ATFVISSL-QLINYDYVACQALILAPTRELAQQIQKVVL-ALGDYLKVKCHA 124
Query: 137 CGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSN 196
C G ++ D K+ ++V P + + R + ++ + L I DE ++ S
Sbjct: 125 CVGGTVVREDIDKLKQ--GVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEAD--EMLSR 180
Query: 197 HPYAKIMKDFYK--PDI 211
A+I + F K PDI
Sbjct: 181 GFKAQIYEVFKKLVPDI 197
>UNIPROTKB|Q9UMR2 [details] [associations]
symbol:DDX19B "ATP-dependent RNA helicase DDX19B"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0031965 "nuclear
membrane" evidence=IEA] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0005635 "nuclear envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0015031
GO:GO:0031965 GO:GO:0005643 GO:GO:0003723 GO:GO:0004386
GO:GO:0006406 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
OrthoDB:EOG46MBJK EMBL:CH471241 EMBL:AJ237946 EMBL:AF353720
EMBL:AL136639 EMBL:CR457215 EMBL:CR533509 EMBL:AK027378
EMBL:AK301938 EMBL:AK302107 EMBL:AK316346 EMBL:AC012184
EMBL:BC003626 EMBL:BC010008 IPI:IPI00008943 IPI:IPI00027599
IPI:IPI00556368 IPI:IPI00939593 RefSeq:NP_001014449.1
RefSeq:NP_001014451.1 RefSeq:NP_001244101.1 RefSeq:NP_001244102.1
RefSeq:NP_001244103.1 RefSeq:NP_009173.1 UniGene:Hs.221761 PDB:3EWS
PDB:3FHC PDB:3FHT PDB:3FMO PDB:3FMP PDB:3G0H PDBsum:3EWS
PDBsum:3FHC PDBsum:3FHT PDBsum:3FMO PDBsum:3FMP PDBsum:3G0H
ProteinModelPortal:Q9UMR2 SMR:Q9UMR2 DIP:DIP-48486N IntAct:Q9UMR2
MINT:MINT-1387516 STRING:Q9UMR2 PhosphoSite:Q9UMR2 DMDM:10719979
PaxDb:Q9UMR2 PRIDE:Q9UMR2 DNASU:11269 Ensembl:ENST00000288071
Ensembl:ENST00000355992 Ensembl:ENST00000393657
Ensembl:ENST00000451014 Ensembl:ENST00000563392
Ensembl:ENST00000568625 GeneID:11269 KEGG:hsa:11269 UCSC:uc002eyo.3
UCSC:uc002eyp.3 CTD:11269 GeneCards:GC16P070328 HGNC:HGNC:2742
HPA:CAB037284 MIM:605812 neXtProt:NX_Q9UMR2 PharmGKB:PA27208
InParanoid:Q9UMR2 OMA:HETIFEV PhylomeDB:Q9UMR2 ChiTaRS:DDX19B
EvolutionaryTrace:Q9UMR2 GenomeRNAi:11269 NextBio:42879
ArrayExpress:Q9UMR2 Bgee:Q9UMR2 CleanEx:HS_DDX19B
Genevestigator:Q9UMR2 GermOnline:ENSG00000157349 Uniprot:Q9UMR2
Length = 479
Score = 95 (38.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 41/144 (28%), Positives = 71/144 (49%)
Query: 434 IVTARALSYILQNLKFLASWRCHFLV--GVNAGLKS--MSRNAMKSILEKFRSGELNLLV 489
I A+A+ I + + ASW L G L S M +++E+FR G+ +LV
Sbjct: 331 ITIAQAM--IFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 388
Query: 490 ATKVGEEGLDIQTCCLVIRFDLPETV------ASFIQSRGRA-RMPQSEYAF-LVDSGNQ 541
T V G+D++ +VI FDLP +++ GR R + A +VDS +
Sbjct: 389 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 448
Query: 542 RE-LDLIK-NFSKEEDRMNREIMD 563
L+ I+ +F+K+ +R++ + +D
Sbjct: 449 MNILNRIQEHFNKKIERLDTDDLD 472
Score = 83 (34.3 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 36/135 (26%), Positives = 62/135 (45%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRK-PQKSICIFLAP 113
P +I ++ L L +N+I +G GKT VL + K PQ C+ L+P
Sbjct: 115 PSKI-QENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ---CLCLSP 170
Query: 114 TVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYH 172
T L Q KVIE+ F + R + + ++I + ++++ P +L +C
Sbjct: 171 TYELALQTGKVIEQMGKFYPELKLAYAVR-GNKLERGQKISE-QIVIGTPGTVLDWCSKL 228
Query: 173 RFIKMELIALLIFDE 187
+FI + I + + DE
Sbjct: 229 KFIDPKKIKVFVLDE 243
>CGD|CAL0001062 [details] [associations]
symbol:orf19.3704 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001062 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000217 EMBL:AACQ01000216 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_711043.1 RefSeq:XP_711056.1 ProteinModelPortal:Q59MW2
STRING:Q59MW2 GeneID:3647328 GeneID:3647350 KEGG:cal:CaO19.11188
KEGG:cal:CaO19.3704 KO:K14807 Uniprot:Q59MW2
Length = 606
Score = 110 (43.8 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 32/114 (28%), Positives = 58/114 (50%)
Query: 469 SRNAMKS-ILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-AR 526
+R +++S IL++F + E+N+L+ T + G+D+ + VI +DLP + ++ GR AR
Sbjct: 482 NRTSIRSKILKQFSNQEVNILITTDLIARGIDVASITDVINYDLPNSSREYVHRVGRTAR 541
Query: 527 MPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNR-EIMDRTSSDAFTCSEERIYK 579
Q YA+ G + E + E R E +D + + +E IY+
Sbjct: 542 ANQVGYAYSFCFG-KGENSWFNKLAHEVSRSKEVENVDLNVKELISDRDEEIYQ 594
Score = 70 (29.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 42/204 (20%), Positives = 93/204 (45%)
Query: 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQ-QAKVIEESIGFK 132
+I+V TG GKT + I E + P+ + I L PT L+ Q ++ +++ S G
Sbjct: 219 DILVNASTGSGKTLAYSIPIIESLYRRVVPRVRV-IILVPTKPLINQVKSTLLQLSSGTN 277
Query: 133 VRTFCGGSKRLKSHCDWEKEIDQY--EVLVMIPQILLYCLYHRFIKMELIALLIFDECHH 190
++ K S D + + + +++V P L+ L + I + + LI DE
Sbjct: 278 LQI--AALKNDVSINDEKDSLTKSVPDIIVSTPGRLVEHLLNDSINLSSLQYLIIDEADR 335
Query: 191 AQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAK 250
+S ++ ++ D I + ++ ++ +V A+ + K ++SL+ + +
Sbjct: 336 LLNQSFQNWSNVLLDKIDSQI-NIAEVWKLSVQKLVFS-ATLTTDAGK-LSSLK-FYNPR 391
Query: 251 VYSVEDAEDLESFVSSPVVRVYQY 274
+ V D++ L + + + V + ++
Sbjct: 392 LIIVNDSKQLVNEIFTVPVTLSEF 415
>UNIPROTKB|H3BQK0 [details] [associations]
symbol:DDX19B "HCG1998531, isoform CRA_g" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:CH471241 EMBL:AC012184 HGNC:HGNC:2742
ChiTaRS:DDX19B SMR:H3BQK0 Ensembl:ENST00000563206 Uniprot:H3BQK0
Length = 484
Score = 95 (38.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 41/144 (28%), Positives = 71/144 (49%)
Query: 434 IVTARALSYILQNLKFLASWRCHFLV--GVNAGLKS--MSRNAMKSILEKFRSGELNLLV 489
I A+A+ I + + ASW L G L S M +++E+FR G+ +LV
Sbjct: 336 ITIAQAM--IFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 393
Query: 490 ATKVGEEGLDIQTCCLVIRFDLPETV------ASFIQSRGRA-RMPQSEYAF-LVDSGNQ 541
T V G+D++ +VI FDLP +++ GR R + A +VDS +
Sbjct: 394 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 453
Query: 542 RE-LDLIK-NFSKEEDRMNREIMD 563
L+ I+ +F+K+ +R++ + +D
Sbjct: 454 MNILNRIQEHFNKKIERLDTDDLD 477
Score = 83 (34.3 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 36/135 (26%), Positives = 62/135 (45%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRK-PQKSICIFLAP 113
P +I ++ L L +N+I +G GKT VL + K PQ C+ L+P
Sbjct: 120 PSKI-QENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ---CLCLSP 175
Query: 114 TVALVQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYH 172
T L Q KVIE+ F + R + + ++I + ++++ P +L +C
Sbjct: 176 TYELALQTGKVIEQMGKFYPELKLAYAVR-GNKLERGQKISE-QIVIGTPGTVLDWCSKL 233
Query: 173 RFIKMELIALLIFDE 187
+FI + I + + DE
Sbjct: 234 KFIDPKKIKVFVLDE 248
>UNIPROTKB|C9JG98 [details] [associations]
symbol:DHX58 "Probable ATP-dependent RNA helicase DHX58"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0032480 "negative regulation of type I interferon
production" evidence=IEA] [GO:0032481 "positive regulation of type
I interferon production" evidence=IEA] [GO:0039536 "negative
regulation of RIG-I signaling pathway" evidence=IEA] [GO:0045824
"negative regulation of innate immune response" evidence=IEA]
[GO:1900245 "positive regulation of MDA-5 signaling pathway"
evidence=IEA] [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR006935 Pfam:PF04851 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0051607 GO:GO:0016787 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0032480 GO:GO:0039536
GO:GO:0045824 GO:GO:1900245 GO:GO:1900246 HGNC:HGNC:29517
HOGENOM:HOG000230992 ChiTaRS:DHX58 GO:GO:0032481 EMBL:AC105024
IPI:IPI00792703 ProteinModelPortal:C9JG98 SMR:C9JG98 STRING:C9JG98
Ensembl:ENST00000413196 ArrayExpress:C9JG98 Bgee:C9JG98
Uniprot:C9JG98
Length = 302
Score = 132 (51.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 48/182 (26%), Positives = 83/182 (45%)
Query: 60 RKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALV 118
R YQ E+ A+E +NII++L TG GKT A + HL + + L V LV
Sbjct: 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKR--HLETVDGAKVVV-LVNRVHLV 60
Query: 119 QQQAKVIEESIG--FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY----H 172
Q + + + V T G + + +++L+ ++L L
Sbjct: 61 TQHGEEFRRMLDGRWTVTTLSGD---MGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117
Query: 173 RFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIMK---VPRIFGMTASPVVGKG 229
+++ + +L++ DECHH + Y IM + + + + +P++ G+TASP G G
Sbjct: 118 EHVELTVFSLIVVDECHHTH--KDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTG-G 174
Query: 230 AS 231
AS
Sbjct: 175 AS 176
Score = 37 (18.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 1061 LHDTVDEGELTRRRSNAVNNSNLLKLA 1087
+HD ++ EL+R+ + ++KL+
Sbjct: 240 IHDHLEMPELSRKFGTQMYEQQVVKLS 266
>ZFIN|ZDB-GENE-080721-12 [details] [associations]
symbol:zgc:193690 "zgc:193690" species:7955 "Danio
rerio" [GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-080721-12 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
EMBL:CR846089 IPI:IPI00928637 ProteinModelPortal:F1Q5T4
Ensembl:ENSDART00000134461 ArrayExpress:F1Q5T4 Bgee:F1Q5T4
Uniprot:F1Q5T4
Length = 492
Score = 97 (39.2 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVAS------FIQSRGRA-RM 527
+++E+FR G+ +L+ T V G+D++ +VI FDLP S ++ GR R
Sbjct: 366 AVIERFRDGKEKVLITTNVCARGIDVEQVSVVINFDLPLDKDSNPDNETYLHRIGRTGRF 425
Query: 528 PQSEYAF-LVDSGNQRELDLIKNFSK 552
+ A +VDS QR ++++K + +
Sbjct: 426 GKRGLAINMVDS--QRSMEILKTYER 449
Score = 81 (33.6 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGFK 132
+N+I +G GKT VL + L+H+ + S C+ ++PT L Q KVIE+ F
Sbjct: 124 QNLIAQSQSGTGKTAAFVLAM--LSHVDPACKWSQCLCISPTYELALQTGKVIEQMGKFY 181
Query: 133 VRTFCGGSKRLKSHCDWEKEID-QYEVLVMIPQILL-YCLYHRFIKMELIALLIFDE 187
+ R H E+ + + ++++ P +L +C+ + I + I + + DE
Sbjct: 182 PEVTLAYAVR--GH-RMERGVRIKDQIVIGTPGTVLDWCIKLKLIDPKKIKVFVLDE 235
>UNIPROTKB|F1S758 [details] [associations]
symbol:LOC100523329 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:WHFAERI
EMBL:CU928873 Ensembl:ENSSSCT00000016589 Uniprot:F1S758
Length = 379
Score = 95 (38.5 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA------SFIQSRGRA-RM 527
+I+++FR G+ +L+ T V G+D++ +V+ FDLP A +++ GR R
Sbjct: 275 AIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRF 334
Query: 528 PQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSD 568
+ AF N E+D + K +D N I D
Sbjct: 335 GKKGLAF-----NMIEVDKLPLLMKIQDHFNSNIKQLDPED 370
Score = 80 (33.2 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 32/120 (26%), Positives = 52/120 (43%)
Query: 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRK-PQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL + + + PQ C+ LAPT L Q +V+E F
Sbjct: 33 QNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQ---CLCLAPTYELALQTGRVVERMGRF 89
Query: 132 KVRT---FCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHRFIKMELIALLIFDE 187
V + R+ D K+I ++ P +L +C + I + I + + DE
Sbjct: 90 CVDVQVMYAIRGNRIPRGTDITKQI-----IIGTPGTVLDWCFKRKLIDLTKIRVFVLDE 144
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 96 (38.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-AR 526
MS+N L KF++ ++L+AT V GLDI +VI FD+P +I GR AR
Sbjct: 298 MSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTAR 357
Query: 527 MPQS 530
+S
Sbjct: 358 AGRS 361
Score = 81 (33.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 63/280 (22%), Positives = 112/280 (40%)
Query: 57 QIARKYQLELCKKAMEENIIVYLG-TGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTV 115
++ K Q+E A++ I+ L TG GKT L I L L+ PQ+ + L PT
Sbjct: 46 KVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPI--LQALLDAPQRLFALVLTPTR 103
Query: 116 AL---VQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH 172
L + +Q + + SIG GG + K+ +++ P L+ L +
Sbjct: 104 ELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKP---HIIIATPGRLVDHLEN 160
Query: 173 -RFIKMELIALLIFDECHHA-QVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGA 230
+ + + L+ DE + KI+K P K +F T + V K
Sbjct: 161 TKGFNLRALKFLVMDEADRILNMDFETEVDKILKVI--PRDRKT-FLFSATMTKQVQKLQ 217
Query: 231 SAQANLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTS-SSYV--- 286
A N ++ + +K +VE + F+ S Y ++N+ + +S++
Sbjct: 218 RAALK-----NPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVY-ILNELAGNSFMIFC 271
Query: 287 -TCS--EQLAEIKREQYISALSRKLHDHQSLRNTTKQLNR 323
TC+ ++ A + R +A+ LH S LN+
Sbjct: 272 STCNNTQRTALLLRNLGFTAIP--LHGQMSQNKRLGSLNK 309
>TAIR|locus:2182202 [details] [associations]
symbol:AT5G19210 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC069326 UniGene:At.31320 UniGene:At.429
EMBL:BT004328 IPI:IPI00526020 IPI:IPI00537594 RefSeq:NP_197422.2
RefSeq:NP_974812.1 ProteinModelPortal:Q3E9C3 SMR:Q3E9C3
EnsemblPlants:AT5G19210.2 GeneID:832041 KEGG:ath:AT5G19210
GeneFarm:1569 TAIR:At5g19210 HOGENOM:HOG000005705 InParanoid:Q3E9C3
OMA:SASIPQH PhylomeDB:Q3E9C3 ProtClustDB:CLSN2918195
Genevestigator:Q3E9C3 GermOnline:AT5G19210 Uniprot:Q3E9C3
Length = 472
Score = 102 (41.0 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
M+ N+ + L + R G LLV+T + G+D+ + FDLP+TV ++ GRA R
Sbjct: 375 MNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGR 434
Query: 527 MPQSEYAFLV 536
P S+ +V
Sbjct: 435 KPFSDRKCIV 444
Score = 75 (31.5 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 35/123 (28%), Positives = 55/123 (44%)
Query: 76 IVYLGTGCGKTHIAVLLIYELAHLIRKPQKSI--CIFLAPTVALVQQQAKVI-----EES 128
I++ TG GKT +LLI+ L + PQ+S + + PT L Q KV +
Sbjct: 117 ILHAQTGSGKTLTYLLLIFSLIN----PQRSSVQAVIVVPTRELGMQVTKVARMLAAKSE 172
Query: 129 IGFKVRTFC----GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLI 184
I K T GG+ L+ H W K + +LV L + L +++ + +L+
Sbjct: 173 IDVKGCTVMALLDGGT--LRRHKSWLKA-EPPAILVATVASLCHMLEKHIFRIDSVRVLV 229
Query: 185 FDE 187
DE
Sbjct: 230 VDE 232
>TAIR|locus:2130839 [details] [associations]
symbol:RH1 "RNA helicase 1" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0006626 "protein
targeting to mitochondrion" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=TAS] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 GO:GO:0017151 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z97339 GO:GO:0008026 eggNOG:COG0513
PROSITE:PS51195 EMBL:AL161542 KO:K14807 HOGENOM:HOG000239572
OMA:CSKTELE EMBL:Y11187 EMBL:Y11154 IPI:IPI00538787 PIR:A71424
PIR:E85175 RefSeq:NP_193320.6 UniGene:At.33
ProteinModelPortal:Q7FGZ2 SMR:Q7FGZ2 STRING:Q7FGZ2 PaxDb:Q7FGZ2
PRIDE:Q7FGZ2 EnsemblPlants:AT4G15850.1 GeneID:827266
KEGG:ath:AT4G15850 GeneFarm:907 TAIR:At4g15850 InParanoid:Q7FGZ2
Genevestigator:Q7FGZ2 GermOnline:AT4G15850 Uniprot:Q7FGZ2
Length = 522
Score = 126 (49.4 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 43/160 (26%), Positives = 76/160 (47%)
Query: 394 LSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASW 453
L C+ ++ E K + L+ +L ++ + KCI+F + + T R L +L
Sbjct: 310 LECLRLICET--GMKPVYLVALLKSWEGE---KCIIFTSSVETTRRLCKLLNFFGDPKIK 364
Query: 454 RCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPE 513
+ G+N L+S L+ FR G++ +LVA+ G+D++ VI +D+P
Sbjct: 365 AKEYSGGLNQSLRSKE-------LKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPP 417
Query: 514 TVASFIQSRGR-ARMPQSEYAFLVDSGNQRELDLIKNFSK 552
+FI GR AR Q+ F + S ++ ++ FSK
Sbjct: 418 FAKTFIHRAGRTARAGQAGRCFTLLSNHE-----VRRFSK 452
Score = 51 (23.0 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSI-CIFLAP 113
P Q+A ++ + E +I V TG GKT L I +L L +P + + + + P
Sbjct: 56 PVQVAVWHET-IGPGGFERDICVNSPTGSGKTLSYALPIVQL--LASRPVRCLRALVVLP 112
Query: 114 TVALVQQQAKV---IEESIGFKVRTFCGGS 140
T L Q V I ++G V + G S
Sbjct: 113 TRDLALQVKDVFDAIAPAVGLSVGSAVGQS 142
Score = 44 (20.5 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 171 YHRFIKMELIALLIFDECHHAQVKSNHP 198
Y R +KM L A L D Q+ +HP
Sbjct: 267 YPRLVKMVLSATLTQDPSKLIQLDLHHP 294
>UNIPROTKB|I3LB32 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RARRDHF GeneTree:ENSGT00670000098028 EMBL:FP565347
RefSeq:XP_003355824.1 Ensembl:ENSSSCT00000027762 GeneID:100621490
KEGG:ssc:100621490 Uniprot:I3LB32
Length = 540
Score = 99 (39.9 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 41/143 (28%), Positives = 61/143 (42%)
Query: 391 ASDLSCIEV-LKEPFF----SKKLLRLIGILS----TFRLQQHMKCIVFVNRIVTARALS 441
+S L CI +K+ F ++K+ L+ IL +R +VF N T L
Sbjct: 355 SSKLHCIMPHVKQTFMRLKGAEKVTELVQILKQHDRAYRTGSAGTVLVFCNSSSTVNWLG 414
Query: 442 YILQNLKFLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQ 501
YIL + K H + G S A I + F+ G ++L+ T + GLD
Sbjct: 415 YILDDHKIQ-----HLRL---QGQMPASMRA--GIFQSFQRGSQDILLCTDIASRGLDST 464
Query: 502 TCCLVIRFDLPETVASFIQSRGR 524
LVI +D P T+ +I GR
Sbjct: 465 QVELVINYDFPLTLQDYIHRAGR 487
Score = 79 (32.9 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 34/124 (27%), Positives = 54/124 (43%)
Query: 74 NIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSIC-------IFLAPTVALVQQQAKVIE 126
+I+ TG GKT + +L L L+ +P C + L P+ L +Q V +
Sbjct: 167 HILCAAETGSGKT-LGYMLPL-LQRLLGQPSLDSCRIPAPRGLVLVPSRELAEQVRAVAQ 224
Query: 127 ---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALL 183
S+G +VR GG + K+ +VLV P L L + I +E ++ L
Sbjct: 225 PLGSSLGLQVRELGGGHGMSRIRLQLSKQ-PPADVLVATPGALWKGLKSQLISLEQLSFL 283
Query: 184 IFDE 187
+ DE
Sbjct: 284 VLDE 287
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 92 (37.4 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 32/112 (28%), Positives = 55/112 (49%)
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-AR 526
MS++ L KF++ ++L+AT V GLDI +V+ FD+P +I GR AR
Sbjct: 299 MSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTAR 358
Query: 527 MPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREI-MDRTSSDAFTCSEERI 577
+S A + Q +++L F + E + +++ + T D ER+
Sbjct: 359 AGRSGKA--ITFVTQYDVEL---FQRIEHLIGKKLPVFPTQDDEVMMLTERV 405
Score = 84 (34.6 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 63/276 (22%), Positives = 111/276 (40%)
Query: 61 KYQLELCKKAMEENIIVYLG-TGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL-- 117
K Q+E A++ I+ L TG GKT L I L L+ PQ+ + L PT L
Sbjct: 51 KIQIEAIPLALQGRDIIGLAETGSGKTGAFALPI--LNALLETPQRLFALVLTPTRELAF 108
Query: 118 -VQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH-RFI 175
+ +Q + + SIG + GG + K+ +++ P L+ L + +
Sbjct: 109 QISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKP---HIVIATPGRLIDHLENTKGF 165
Query: 176 KMELIALLIFDECHHA-QVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQA 234
+ + L+ DE + KI+K P K +F T + V K A
Sbjct: 166 NLRALKYLVMDEADRILNMDFETEVDKILKVI--PRDRKT-FLFSATMTKKVQKLQRAAL 222
Query: 235 NLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTS-SSYV----TCS 289
N ++ + +K +VE + F+ S Y ++N+ + +S++ TC+
Sbjct: 223 K-----NPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY-ILNELAGNSFMIFCSTCN 276
Query: 290 --EQLAEIKREQYISALSRKLHDHQSLRNTTKQLNR 323
++ A + R +A+ LH S LN+
Sbjct: 277 NTQRTALLLRNLGFTAIP--LHGQMSQSKRLGSLNK 310
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 119 (46.9 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 39/143 (27%), Positives = 62/143 (43%)
Query: 415 ILSTFRLQQHMKCIVFVNRIVTARALSYILQNLK--FLASWRCHFLVGVNAGLKSMSRNA 472
IL + + K + + I R + ++ K F+A++ C + + +
Sbjct: 493 ILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQRE 552
Query: 473 MKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSE 531
+ L FR G+ +LVAT V GLDI+ VI FDLP T+ ++ GR R +
Sbjct: 553 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 612
Query: 532 YA---FLVDSGNQRELDLIKNFS 551
A F +S N L+K S
Sbjct: 613 RAISFFDTESDNHLAQPLVKVLS 635
Score = 60 (26.2 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 33/119 (27%), Positives = 53/119 (44%)
Query: 81 TGCGKTHIAVLLIYELAHLIR---------KPQKSICIFLAPTVALVQQ-QAKVIEESIG 130
TG GKT A L+ LAH++R + Q+ CI +APT L+ Q + + S G
Sbjct: 308 TGSGKT--AAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFG 365
Query: 131 FKVRTFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
VR GG++ H + + +L P L+ + I ++ + L+ DE
Sbjct: 366 TCVRAVVIYGGTQF--GH-SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDE 421
>UNIPROTKB|P66666 [details] [associations]
symbol:rnc "Ribonuclease 3" species:1773 "Mycobacterium
tuberculosis" [GO:0040007 "growth" evidence=IMP] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005737 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
EMBL:BX842581 GO:GO:0016075 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
HOGENOM:HOG000246808 OMA:LTHKSCK PIR:E70748 RefSeq:NP_217441.1
RefSeq:NP_337508.1 RefSeq:YP_006516379.1 PDB:2A11 PDBsum:2A11
ProteinModelPortal:P66666 SMR:P66666 PRIDE:P66666
EnsemblBacteria:EBMYCT00000002463 EnsemblBacteria:EBMYCT00000072869
GeneID:13317719 GeneID:887873 GeneID:925280 KEGG:mtc:MT2995
KEGG:mtu:Rv2925c KEGG:mtv:RVBD_2925c PATRIC:18128352
TubercuList:Rv2925c EvolutionaryTrace:P66666 Uniprot:P66666
Length = 240
Score = 120 (47.3 bits), Expect = 0.00046, P = 0.00046
Identities = 49/149 (32%), Positives = 69/149 (46%)
Query: 1228 LLLQAFVHPSFN-RLGGC--YQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLV 1284
LL A H S+ GG +RLEFLGDAVL IT L+ +P G L LR+ +V
Sbjct: 20 LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVV 79
Query: 1285 NNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVE 1344
N QA A+VA + +E + +V ++T G +L D +E
Sbjct: 80 NTQALADVA------------RRLCAEGLGVHVLLGRGEANTG----GADKSSILADGME 123
Query: 1345 SSLGAILLDSGFNLNTVWKIMLSFLDPIL 1373
S LGAI L G + +++L P+L
Sbjct: 124 SLLGAIYLQHG--MEKAREVILRLFGPLL 150
>UNIPROTKB|I3L0H8 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HGNC:HGNC:25628 EMBL:AC012184 ProteinModelPortal:I3L0H8 SMR:I3L0H8
PRIDE:I3L0H8 Ensembl:ENST00000417604 Bgee:I3L0H8 Uniprot:I3L0H8
Length = 447
Score = 95 (38.5 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 41/144 (28%), Positives = 71/144 (49%)
Query: 434 IVTARALSYILQNLKFLASWRCHFLV--GVNAGLKS--MSRNAMKSILEKFRSGELNLLV 489
I A+A+ I + + ASW L G L S M +++E+FR G+ +LV
Sbjct: 299 ITIAQAM--IFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 356
Query: 490 ATKVGEEGLDIQTCCLVIRFDLPETV------ASFIQSRGRA-RMPQSEYAF-LVDSGNQ 541
T V G+D++ +VI FDLP +++ GR R + A +VDS +
Sbjct: 357 TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHS 416
Query: 542 RE-LDLIK-NFSKEEDRMNREIMD 563
L+ I+ +F+K+ +R++ + +D
Sbjct: 417 MNILNRIQEHFNKKIERLDTDDLD 440
Score = 83 (34.3 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 32/119 (26%), Positives = 58/119 (48%)
Query: 71 MEENIIVYLGTGCGKTHIAVL-LIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESI 129
+ +N+I +G GKT VL ++ + R PQ C+ L+PT L Q KVIE+
Sbjct: 98 LPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQ---CLCLSPTYELALQTGKVIEQMG 154
Query: 130 GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHRFIKMELIALLIFDE 187
F + R + + ++I + ++++ P +L +C +FI + I + + DE
Sbjct: 155 KFYPELKLAYAVR-GNKLERGQKISE-QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 211
Score = 41 (19.5 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 43 ESSVGAQKTDKDPKQIARKYQLELCKKAMEENII 76
++S A+KTD++ K+ R Q L K + N++
Sbjct: 39 KTSTTAEKTDEEEKE-DRAAQ-SLLNKLIRSNLV 70
>UNIPROTKB|F1MSI6 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0006417
GO:GO:0007286 GO:GO:0003676 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
IPI:IPI00724449 OMA:WHFAERI EMBL:DAAA02063102
Ensembl:ENSBTAT00000005587 Uniprot:F1MSI6
Length = 483
Score = 94 (38.1 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA------SFIQSRGRA-RM 527
SI+++FR G+ +L+ T V G+D++ +V+ FDLP A +++ GR R
Sbjct: 379 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRF 438
Query: 528 PQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSD 568
+ AF N E+D + K +D + I D
Sbjct: 439 GKKGLAF-----NMIEVDKLPLLMKIQDHFSENIKQLDPED 474
Score = 82 (33.9 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 32/119 (26%), Positives = 52/119 (43%)
Query: 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRK-PQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL + + ++ PQ C+ LAPT L Q +V+E F
Sbjct: 137 QNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQ---CLCLAPTYELALQTGRVVERMGKF 193
Query: 132 KVRT---FCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
V + R+ D K+I V+ +L +C + I + I + + DE
Sbjct: 194 CVDVQVMYAIRGNRIPRGTDVTKQI----VIGTPGTVLDWCFKRKLIDLTKIRVFVLDE 248
>TAIR|locus:2088237 [details] [associations]
symbol:EIF4A1 "eukaryotic translation initiation factor
4A1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005618 GO:GO:0046686 EMBL:CP002686 GO:GO:0005730
GO:GO:0016020 GO:GO:0048046 GO:GO:0006413 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OMA:SKRERIM
IPI:IPI00657454 RefSeq:NP_001030693.1 UniGene:At.23558
UniGene:At.28184 ProteinModelPortal:F4JEL4 SMR:F4JEL4 PRIDE:F4JEL4
EnsemblPlants:AT3G13920.2 GeneID:820605 KEGG:ath:AT3G13920
Uniprot:F4JEL4
Length = 415
Score = 115 (45.5 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 38/129 (29%), Positives = 62/129 (48%)
Query: 397 IEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCH 456
+ V KE + KL L + T + Q ++FVN T R + ++ ++ R H
Sbjct: 257 VNVEKEEW---KLETLCDLYETLAITQS---VIFVN---TRRKVDWLTDKMRS----RDH 303
Query: 457 FLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA 516
V+A M +N I+ +FRSG +L+ T + G+D+Q LVI FDLP
Sbjct: 304 T---VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPE 360
Query: 517 SFIQSRGRA 525
+++ GR+
Sbjct: 361 NYLHRIGRS 369
Score = 58 (25.5 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 33/136 (24%), Positives = 56/136 (41%)
Query: 55 PKQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPT 114
P I ++ + CK ++I +G GKT A L L + + LAPT
Sbjct: 62 PSAIQQRGIVPFCKGL---DVIQQAQSGTGKT--ATFCSGVLQQLDFSLIQCQALVLAPT 116
Query: 115 VALVQQQAKVIE---ESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLY 171
L QQ KV+ + +G KV GG+ + + + V+V P + L
Sbjct: 117 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGV---HVVVGTPGRVFDMLK 173
Query: 172 HRFIKMELIALLIFDE 187
+ ++ + I + + DE
Sbjct: 174 RQSLRADNIKMFVLDE 189
>TIGR_CMR|SPO_3198 [details] [associations]
symbol:SPO_3198 "ribonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR
TIGRFAMs:TIGR02191 RefSeq:YP_168401.1 ProteinModelPortal:Q5LNK5
GeneID:3195258 KEGG:sil:SPO3198 PATRIC:23379843
ProtClustDB:CLSK934087 Uniprot:Q5LNK5
Length = 225
Score = 99 (39.9 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 30/89 (33%), Positives = 41/89 (46%)
Query: 1206 LSASLDMATLEILLGHQFLHRGLLLQAFVHPSFNR-LGGCYQRLEFLGDAVLDYLITSYL 1264
+ S +M E LG+ F LL++A H S + QRLEFLGD VL ++ + L
Sbjct: 1 MKLSAEMKAFEARLGYSFERPELLVRALTHGSISSSTRQDNQRLEFLGDRVLGLVMATAL 60
Query: 1265 YSVYPKLKPGQLTDLRSMLVNNQAFANVA 1293
GQL + LV + A VA
Sbjct: 61 LEADKDATEGQLAPRFNALVRKETCAEVA 89
Score = 57 (25.1 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 1520 RSARSRLYELCAANCWKPPTFDCCKEEGLSHLKLFTFRVIVEI 1562
R A++ L E A PP ++ K G H +FT ++ E+
Sbjct: 156 RDAKTALQEWAQARGQTPPRYELVKRSGPDHAPVFT--ILAEL 196
Score = 47 (21.6 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 1332 GPRCPKVLGDLVESSLGAILLDSGF 1356
G R +LGD +E+ + A+ D GF
Sbjct: 109 GRRKLALLGDAMEAVIAAVYRDGGF 133
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 91 (37.1 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 32/112 (28%), Positives = 54/112 (48%)
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-AR 526
MS++ L KF++ ++L+AT V GLDI +V+ FD+P +I GR AR
Sbjct: 297 MSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTAR 356
Query: 527 MPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMD-RTSSDAFTCSEERI 577
+S A + Q +++L F + E + +++ T D ER+
Sbjct: 357 AGRSGKA--ITFVTQYDVEL---FQRIEHLIGKKLPGFPTQDDEVMMLTERV 403
Score = 84 (34.6 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 63/276 (22%), Positives = 111/276 (40%)
Query: 61 KYQLELCKKAMEENIIVYLG-TGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL-- 117
K Q+E A++ I+ L TG GKT L I L L+ PQ+ + L PT L
Sbjct: 49 KIQIEAIPLALQGRDIIGLAETGSGKTGAFALPI--LNALLETPQRLFALVLTPTRELAF 106
Query: 118 -VQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH-RFI 175
+ +Q + + SIG + GG + K+ +++ P L+ L + +
Sbjct: 107 QISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKP---HIIIATPGRLIDHLENTKGF 163
Query: 176 KMELIALLIFDECHHA-QVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQA 234
+ + L+ DE + KI+K P K +F T + V K A
Sbjct: 164 NLRALKYLVMDEADRILNMDFETEVDKILKVI--PRDRKT-FLFSATMTKKVQKLQRAAL 220
Query: 235 NLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTS-SSYV----TCS 289
N ++ + +K +VE + F+ S Y ++N+ + +S++ TC+
Sbjct: 221 K-----NPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY-ILNELAGNSFMIFCSTCN 274
Query: 290 --EQLAEIKREQYISALSRKLHDHQSLRNTTKQLNR 323
++ A + R +A+ LH S LN+
Sbjct: 275 NTQRTALLLRNLGFTAIP--LHGQMSQSKRLGSLNK 308
>UNIPROTKB|F1RVF0 [details] [associations]
symbol:LOC100512980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:ESATTFE
Ensembl:ENSSSCT00000012145 Uniprot:F1RVF0
Length = 462
Score = 95 (38.5 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA------SFIQSRGRA-RM 527
+I+++FR G+ +L+ T V G+D++ +V+ FDLP A +++ GR R
Sbjct: 358 AIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRF 417
Query: 528 PQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSD 568
+ AF N E+D + K +D N I D
Sbjct: 418 GKKGLAF-----NMIEVDKLPLLMKIQDHFNSNIKQLDPED 453
Score = 80 (33.2 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 32/120 (26%), Positives = 52/120 (43%)
Query: 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRK-PQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL + + + PQ C+ LAPT L Q +V+E F
Sbjct: 116 QNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQ---CLCLAPTYELALQTGRVVERMGRF 172
Query: 132 KVRT---FCGGSKRLKSHCDWEKEIDQYEVLVMIPQILL-YCLYHRFIKMELIALLIFDE 187
V + R+ D K+I ++ P +L +C + I + I + + DE
Sbjct: 173 CVDVQVMYAIRGNRIPRGTDITKQI-----IIGTPGTVLDWCFKRKLIDLTKIRVFVLDE 227
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 119 (46.9 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 37/140 (26%), Positives = 62/140 (44%)
Query: 415 ILSTFRLQQHMKCIVFVNRIVTARALSYILQNLK--FLASWRCHFLVGVNAGLKSMSRNA 472
+L + + K + + I R + ++ K F+A++ C + + +
Sbjct: 520 VLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQRE 579
Query: 473 MKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSE 531
+ L FR G+ +LVAT V GLDI+ VI FDLP T+ ++ GR R +
Sbjct: 580 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 639
Query: 532 YA---FLVDSGNQRELDLIK 548
A F ++S N L+K
Sbjct: 640 RAISFFDLESDNHLAQPLVK 659
Score = 60 (26.2 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 34/119 (28%), Positives = 53/119 (44%)
Query: 81 TGCGKTHIAVLLIYELAHLI---------RKPQKSICIFLAPTVALVQQ-QAKVIEESIG 130
TG GKT A L+ LAH++ ++ Q+ CI +APT LV Q + + S G
Sbjct: 335 TGSGKT--AAFLLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFG 392
Query: 131 FKVRTFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
VR GG++ H + + +L P L+ + I ++ I L+ DE
Sbjct: 393 TCVRAVVIYGGTQL--GH-SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDE 448
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 99 (39.9 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-R 526
+S+ L +F+SG+ NLL+AT V GLDI VI P TV ++ GR R
Sbjct: 393 LSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR 452
Query: 527 MPQSEYAFLVDSGNQREL 544
Q+ A + + ++ L
Sbjct: 453 AGQTGTAHTLFTEQEKHL 470
Score = 77 (32.2 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 57/264 (21%), Positives = 106/264 (40%)
Query: 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQK-SICIF-LAPTVALVQQ---QAKVIEE 127
++++ TG GKT + ++HL+ +K I + ++PT L Q V+ +
Sbjct: 150 KDVVGVAETGSGKTF--AFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTD 207
Query: 128 SIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
+G + GG + + +K +V+V P LL L + + + L+ DE
Sbjct: 208 KVGMQCCCVYGGVPKDEQRIQLKKS----QVVVATPGRLLDLLQEGSVDLSQVNYLVLDE 263
Query: 188 CHHAQVKSNHPYAKIMKDFYKP-DIMKVPRI-FGMTASPVVGKGASAQANLP--KSINSL 243
K + + +K+ + D K + F T V + AS N P SI +
Sbjct: 264 ADRMLEKG---FEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNT 320
Query: 244 ENLLDAK----VYSVEDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSEQLAEIKRE- 298
+ L K + V D E + +++ Y GP N+ + ++ A ++R
Sbjct: 321 DQLTANKRITQIVEVVDPRGKERKLLE-LLKKYHSGPKKNEKVLIFALYKKEAARVERNL 379
Query: 299 QYISALSRKLHDHQSLRNTTKQLN 322
+Y +H S + T+ LN
Sbjct: 380 KYNGYNVAAIHGDLSQQQRTQALN 403
>RGD|68381 [details] [associations]
symbol:Ddx25 "DEAD (Asp-Glu-Ala-Asp) box helicase 25"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA;ISO;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISO;ISS] [GO:0005634 "nucleus" evidence=IEA;ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006200 "ATP catabolic
process" evidence=ISO;IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA;ISO;ISS] [GO:0006417 "regulation of translation"
evidence=IEA;ISO;ISS] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA;ISO;ISS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0033391 "chromatoid body" evidence=IEA;ISO;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:68381
GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0006417
GO:GO:0007286 GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 CTD:29118 OrthoDB:EOG4NS3BD
EMBL:AF142629 IPI:IPI00213497 IPI:IPI00760145 IPI:IPI00760150
RefSeq:NP_113818.2 UniGene:Rn.224821 ProteinModelPortal:Q9QY16
SMR:Q9QY16 STRING:Q9QY16 PRIDE:Q9QY16 GeneID:58856 KEGG:rno:58856
UCSC:RGD:68381 InParanoid:Q9QY16 NextBio:611449 ArrayExpress:Q9QY16
Genevestigator:Q9QY16 GermOnline:ENSRNOG00000012260 Uniprot:Q9QY16
Length = 483
Score = 95 (38.5 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 475 SILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVA------SFIQSRGRA-RM 527
SI+++FR G+ +L+ T V G+D++ +V+ FDLP + +++ GR R
Sbjct: 379 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYETYLHRIGRTGRF 438
Query: 528 PQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSD 568
+ AF N E+D + K +D N I D
Sbjct: 439 GKKGLAF-----NMIEVDKLPLLMKIQDHFNSSIKQLDPED 474
Score = 80 (33.2 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 32/119 (26%), Positives = 51/119 (42%)
Query: 73 ENIIVYLGTGCGKTHIAVLLIYELAHLIRK-PQKSICIFLAPTVALVQQQAKVIEESIGF 131
+N+I +G GKT VL + + + PQ C+ LAPT L Q +V+E F
Sbjct: 137 QNLIAQSQSGTGKTAAFVLAMLNRVNALELFPQ---CLCLAPTYELALQTGRVVERMGKF 193
Query: 132 KVRT---FCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
V + R+ D K+I V+ +L +C + I + I + + DE
Sbjct: 194 CVDVEVMYAIRGNRIPRGTDVTKQI----VIGTPGTVLDWCFKRKLIDLTKIRVFVLDE 248
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 92 (37.4 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 32/112 (28%), Positives = 55/112 (49%)
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-AR 526
MS++ L KF++ ++L+AT V GLDI +V+ FD+P +I GR AR
Sbjct: 323 MSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTAR 382
Query: 527 MPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREI-MDRTSSDAFTCSEERI 577
+S A + Q +++L F + E + +++ + T D ER+
Sbjct: 383 AGRSGKA--ITFVTQYDVEL---FQRIEHLIGKKLPVFPTQDDEVMMLTERV 429
Score = 83 (34.3 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 63/276 (22%), Positives = 111/276 (40%)
Query: 61 KYQLELCKKAMEENIIVYLG-TGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL-- 117
K Q+E A++ I+ L TG GKT L I L L+ PQ+ + L PT L
Sbjct: 75 KIQIEAIPLALQGRDIIGLAETGSGKTGAFALPI--LNALLETPQRLFALVLTPTRELAF 132
Query: 118 -VQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH-RFI 175
+ +Q + + SIG + GG + K+ +++ P L+ L + +
Sbjct: 133 QISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKP---HIVIATPGRLIDHLENTKGF 189
Query: 176 KMELIALLIFDECHHA-QVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQA 234
+ + L+ DE + KI+K P K +F T + V K A
Sbjct: 190 NLRALKYLVMDEADRILNMDFETEVDKILKVI--PRDRKT-FLFSATMTKKVQKLQRAAL 246
Query: 235 NLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTS-SSYV----TCS 289
N ++ + +K +VE + F+ S Y ++N+ + +S++ TC+
Sbjct: 247 K-----NPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY-ILNELAGNSFMIFCSTCN 300
Query: 290 --EQLAEIKREQYISALSRKLHDHQSLRNTTKQLNR 323
++ A + R +A+ LH S LN+
Sbjct: 301 NTQRTALLLRNLGFTAIP--LHGQMSQSKRLGSLNK 334
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 97 (39.2 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 40/119 (33%), Positives = 55/119 (46%)
Query: 406 SKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNAGL 465
S+K RL +L IVFVN T + I +NL A +R L G G
Sbjct: 561 SEKFFRLQKLLDELG---EKTAIVFVN---TKKNCDSIAKNLD-KAGYRVTTLHG---G- 609
Query: 466 KSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR 524
KS + + LE FR+ N+LVAT V G+DI VI +D+P+ + + GR
Sbjct: 610 KSQEQREIS--LEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGR 666
Score = 82 (33.9 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 34/128 (26%), Positives = 62/128 (48%)
Query: 72 EENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKS--------ICIFLAPTVALVQQ-QA 122
+ ++I TG GKT A ++ LA++ R P S + +APT L QQ +
Sbjct: 350 QRDVIGIAETGSGKT--AAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEE 407
Query: 123 KVIEES--IGFKVRTFCGGSKRLKSHCDWEKEIDQ-YEVLVMIPQILLYCLYHRFIKMEL 179
+ ++ + +GF+V + GG +S + +I Q E+++ P L+ CL R+ +
Sbjct: 408 ETVKFAHYLGFRVTSIVGG----QSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQ 463
Query: 180 IALLIFDE 187
++ DE
Sbjct: 464 CNYVVLDE 471
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 118 (46.6 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 37/140 (26%), Positives = 62/140 (44%)
Query: 415 ILSTFRLQQHMKCIVFVNRIVTARALSYILQNLK--FLASWRCHFLVGVNAGLKSMSRNA 472
+L + + K + + I R + ++ K F+A++ C + + +
Sbjct: 499 VLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQRE 558
Query: 473 MKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSE 531
+ L FR G+ +LVAT V GLDI+ VI FDLP T+ ++ GR R +
Sbjct: 559 REQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 618
Query: 532 YA---FLVDSGNQRELDLIK 548
A F ++S N L+K
Sbjct: 619 RAISFFDLESDNHLAQPLVK 638
Score = 60 (26.2 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 34/119 (28%), Positives = 53/119 (44%)
Query: 81 TGCGKTHIAVLLIYELAHLI---------RKPQKSICIFLAPTVALVQQ-QAKVIEESIG 130
TG GKT A L+ LAH++ ++ Q+ CI +APT LV Q + + S G
Sbjct: 314 TGSGKT--AAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFG 371
Query: 131 FKVRTFC--GGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDE 187
VR GG++ H + + +L P L+ + I ++ I L+ DE
Sbjct: 372 TCVRAVVIYGGTQL--GH-SIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDE 427
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 90 (36.7 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 468 MSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGR-AR 526
MS++ L KF++ ++L+AT V GLDI +V+ FD+P +I GR AR
Sbjct: 297 MSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTAR 356
Query: 527 MPQS 530
+S
Sbjct: 357 AGRS 360
Score = 84 (34.6 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 63/276 (22%), Positives = 111/276 (40%)
Query: 61 KYQLELCKKAMEENIIVYLG-TGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVAL-- 117
K Q+E A++ I+ L TG GKT L I L L+ PQ+ + L PT L
Sbjct: 49 KIQIEAIPLALQGRDIIGLAETGSGKTGAFALPI--LNALLETPQRLFALVLTPTRELAF 106
Query: 118 -VQQQAKVIEESIGFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYH-RFI 175
+ +Q + + SIG + GG + K+ +++ P L+ L + +
Sbjct: 107 QISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKP---HIVIATPGRLIDHLENTKGF 163
Query: 176 KMELIALLIFDECHHA-QVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASAQA 234
+ + L+ DE + KI+K P K +F T + V K A
Sbjct: 164 NLRALKYLVMDEADRILNMDFETEVDKILKVI--PRDRKT-FLFSATMTKKVQKLQRAAL 220
Query: 235 NLPKSINSLENLLDAKVYSVEDAEDLESFVSSPVVRVYQYGPVINDTS-SSYV----TCS 289
N ++ + +K +VE + F+ S Y ++N+ + +S++ TC+
Sbjct: 221 K-----NPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY-ILNELAGNSFMIFCSTCN 274
Query: 290 --EQLAEIKREQYISALSRKLHDHQSLRNTTKQLNR 323
++ A + R +A+ LH S LN+
Sbjct: 275 NTQRTALLLRNLGFTAIP--LHGQMSQSKRLGSLNK 308
WARNING: HSPs involving 11 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1601 1559 0.00080 125 3 11 22 0.37 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 261
No. of states in DFA: 631 (67 KB)
Total size of DFA: 638 KB (2282 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 136.89u 0.14s 137.03t Elapsed: 00:00:06
Total cpu time: 136.96u 0.15s 137.11t Elapsed: 00:00:06
Start: Sat May 11 06:09:39 2013 End: Sat May 11 06:09:45 2013
WARNINGS ISSUED: 2