Query 000380
Match_columns 1601
No_of_seqs 641 out of 5256
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 16:38:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000380.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_159-163//hhsearch_pdb/000380hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qvw_A GLP_546_48378_50642; di 1.0 1 1 671.2 31.4 532 740-1375 17-754 (756)
2 2ykg_A Probable ATP-dependent 1.0 1 1 406.4 37.6 465 55-548 10-525 (696)
3 4a2w_A RIG-I, retinoic acid in 1.0 1 1 393.4 39.1 455 56-546 246-756 (936)
4 4a2q_A RIG-I, retinoic acid in 1.0 1 1 391.6 40.8 458 56-549 246-759 (797)
5 4a2p_A RIG-I, retinoic acid in 1.0 1 1 388.4 40.7 459 55-549 4-518 (556)
6 4gl2_A Interferon-induced heli 1.0 1 1 381.9 36.9 465 55-542 4-522 (699)
7 3tbk_A RIG-I helicase domain; 1.0 1 1 381.9 38.8 457 56-549 2-517 (555)
8 1wp9_A ATP-dependent RNA helic 1.0 1 1 349.5 40.8 432 56-544 7-480 (494)
9 3c4b_A Endoribonuclease dicer; 1.0 1 1 349.3 22.5 235 1210-1450 13-264 (265)
10 3n3w_A Ribonuclease III; nucle 1.0 1 1 346.0 10.3 211 1210-1447 26-245 (248)
No 1
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=1.00 E-value=1 Score=671.19 Aligned_cols=532 Identities=22% Similarity=0.258 Sum_probs=395.9
Q ss_pred CCCCEEEEECCCCCCCCCCCEEEEEECCCCE-EEEE--EEEC------HHHHHHHHHHHHHHHHHC---CC-----CCCC
Q ss_conf 5431788623678874455203799458937-9999--8414------035778999999998720---34-----5444
Q 000380 740 IYREFGLFVKSLLPGEAEHLKVDLHLARGRS-VMTK--LVPS------GIMQAQQFQEMFLKVILD---RS-----EFNS 802 (1601)
Q Consensus 740 ~~~~~~ll~~~~lp~~~~~~~~~l~~~~~~~-~~~~--~~~~------~~~~~~~f~~~~~~~~~~---~~-----~~~~ 802 (1601)
.+..|.|++.++||..+ .|.++..+|.. +.+. +.+. .+..++.||..+|+.++. ++ ..+
T Consensus 17 ~~~~~~~l~~~~l~~~~---~f~~~~~~g~~~v~v~~~~~~~~~l~~~q~~~~~~Fq~~lf~~~l~~~~~~~~~~~~~~- 92 (756)
T 2qvw_A 17 GPSHWLLLLDTHLGTLP---GFKVSAGRGLPAAEVYFEAGPRVSLSRTDATIVAVYQSILFQLLGPTFPASWTEIGATM- 92 (756)
T ss_dssp CEEEEEEEESSCCCSCC---CEEECSBTTBCCEEEECCBCCCCCCCHHHHHHHHHHHHHHHHHHCTTSCSCHHHHHHTC-
T ss_pred CCCEEEEEECCCCCCCC---CCEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC-
T ss_conf 85103112437788889---84225578955689986238865669999999999999999987023320233036543-
Q ss_pred CCCCCCCCCCCCCCCCC-CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 54347888756787775-15883057887521332111223567548999876867899999864458987833345867
Q 000380 803 EFVPLGKDDYCESSSST-FYLLLPVIFHKNSVDWKIIRRCLSSPVFGTPGGSVDRKSLPSHGPLQLHNGWSSESDVENSL 881 (1601)
Q Consensus 803 ~~~~~~~~~~~~~~~~~-~y~~~p~~~~~~~idw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1601)
.+.....+.+..+.+.. .|+++|+......|||+.+...... ....+ + ..-.+.++....+++.|.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~Yll~Pl~~~~~~iDw~~v~~s~~~-~~~~~-----~------~~~~~~d~~~~~~~l~g~v 160 (756)
T 2qvw_A 93 PHNEYTFPRFISNPPQFATLAFLPLLSPTSPLDLRALMVTAQL-MCDAK-----R------LSDEYTDYSTLSASLHGRM 160 (756)
T ss_dssp CGGGSSSTTCCCCCSCCCCEEEEEESSTTCCCCSHHHHHHHHH-HHTCC-----C------GGGC------CTTTSTTCE
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHH-CCCCC-----C------CCCCCCCCHHHHHHHCCCE
T ss_conf 3210134212577865443899967898884220653323442-03567-----8------8511034235688827988
Q ss_pred EEECCCC-EEEEEEEECCCCCCCCCCCCC-CCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8835699-189998003787778989888-99872545656207644589998088310354223344776677432334
Q 000380 882 VYATHKK-WFYLVTNIVFEKNGYSPYKDS-DSSSHVDHLISSYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHEL 959 (1601)
Q Consensus 882 V~~~~~~-~~y~v~~i~~d~~p~S~~~~~-~~~ty~ey~~~~y~~~l~~~~QPll~~~~~~~~~n~l~~~~~~~~~~~~~ 959 (1601)
|+|+|++ ++|++.+|++|++|.|+||.. .+.||.+||+++|++++.+++||||.++++++..|+..+... +.+..
T Consensus 161 V~t~ynn~r~Y~i~~id~d~~P~S~F~~~~~~~Ty~dYYk~ky~i~I~d~~QPLL~~~~~~~~~~~r~~~~~---~~~~~ 237 (756)
T 2qvw_A 161 VATPEISWSLYVVLGIDSTQTSLSYFTRANESITYMRYYATAHNIHLRAADLPLVAAVRLDDLKDHQIPAPG---SWDDL 237 (756)
T ss_dssp EEETTTTTEEEEEEEEEEEEETTSEEEETTEEEEHHHHHHHTTCCCCSCTTSEEEEEEETTTTTTCCCCSTT---C-CCS
T ss_pred EECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCC---CCCCC
T ss_conf 955888853899987647999887678899987799999987396224699872888732333343455555---54567
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHH--HCCCCCHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 4322116422223210355475763--20457649999989999999-99873279999966797899997174343478
Q 000380 960 EEYFDDLPPELCQLKIIGFSKDIGS--SLSLLPSIMHRLENLLVAIE-LKHLLSASFPEGAEVSAEMLLKALTTEKCQER 1036 (1601)
Q Consensus 960 ~~~~~~L~pelC~~~~~~~~~~~~~--~~~~lPsi~~~l~~~l~a~~-l~~~l~~~~~~~~~~~~~~ll~AlT~~~~~~~ 1036 (1601)
.+..++||||+|.++ ++|+++|+ .+.++||||||||++++|.+ ++. .+|....| +..+++|||+++|.+.
T Consensus 238 ~~~~v~L~PELC~vt--~Lp~sl~~~~~~~~lPsil~rie~ll~a~~al~~----~~p~~~~i-~~~~leAlT~~~~~~~ 310 (756)
T 2qvw_A 238 APKLRFLPPELCLLL--PDEFDLIRVQALQFLPEIAKHICDIQNTICALDK----SFPDCGRI-GGERYFAITAGLRLDQ 310 (756)
T ss_dssp CSSCEEECTTTCEEC--CTTSCTTHHHHHTTHHHHHHHHHHHHHHHHHHGG----GSCCCSCC-HHHHHHHHHHHHBCSC
T ss_pred CCCCEEECHHHHEEE--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCCC-CHHHHHHHHHHHHHHH
T ss_conf 765301077882013--6863478887887718999999999999999985----28862446-7899998756541220
Q ss_pred ---------------------CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCC
Q ss_conf ---------------------99742000012478789999998628999963328988664042999999998598432
Q 000380 1037 ---------------------FSLERLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVY 1095 (1601)
Q Consensus 1037 ---------------------~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~N~~L~~~a~~~gL~~~ 1095 (1601)
.|||||||||||||++++|.+||.+||+.+||.||.+|+.+|||.+|+++|+++||++|
T Consensus 311 g~~~~~~~~~~AlTh~s~~~~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~ 390 (756)
T 2qvw_A 311 GRGRGLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQL 390 (756)
T ss_dssp CBTTBSBTTEEECBGGGBCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTT
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHH
T ss_conf 13432034444145645567887279999999999999999999978999843899999998481589999998680788
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCHHH
Q ss_conf 02367788864347997555665111120102359999987310001477743322125889999974031245-68699
Q 000380 1096 IRDQPFDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVEALVGAFIDD-SGFKA 1174 (1601)
Q Consensus 1096 i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~vEAliGA~~~~-~g~~~ 1174 (1601)
|+..++.. ..+|.+||+|||+|||+|+| +|++.
T Consensus 391 l~~~~~e~----------------------------------------------~~~~ilaD~~EAliGAiylD~~G~~~ 424 (756)
T 2qvw_A 391 AEFSNNLV----------------------------------------------AKSKTWADMYEEIVGSIFTGPNGIYG 424 (756)
T ss_dssp CBCCSCC------------------------------------------------CCCCHHHHHHHHHHHHHHSTTHHHH
T ss_pred HCCCCCCC----------------------------------------------CCCCHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 53489977----------------------------------------------76227786999984860135557699
Q ss_pred HHHHHH--------------------------------------------------------------------------
Q ss_conf 999999--------------------------------------------------------------------------
Q 000380 1175 ATAFLK-------------------------------------------------------------------------- 1180 (1601)
Q Consensus 1175 a~~~~~-------------------------------------------------------------------------- 1180 (1601)
+.+|+.
T Consensus 425 a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~~ia~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~~~~~~f~ 504 (756)
T 2qvw_A 425 CEEFLAKTLMSPEHSKTVGSACPDAVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIPAEDML 504 (756)
T ss_dssp HHHHHHHHHBCGGGSCC---CCCHHHHHHHHHHHTSCCCHHHHHHHHHHTTTTTCCCBSSSHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999876643013321235823789999986165022266666677640110000057899999864046557677
Q ss_pred -HHCCCCCCCCH-----------------HHH--------------------HHCCC-C--------CCCCC--------
Q ss_conf -82940244501-----------------133--------------------21014-6--------77778--------
Q 000380 1181 -WIGIQVEFEAS-----------------QVT--------------------NICIS-S--------KSFLP-------- 1205 (1601)
Q Consensus 1181 -~~~~~~~~~~~-----------------~~~--------------------~~~~~-~--------~~~~~-------- 1205 (1601)
|+|+.+.+... .+. ..|+. . +...|
T Consensus 505 ~w~g~~~~~~~~~~~~~~~~~ks~~d~~~al~~g~~l~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 584 (756)
T 2qvw_A 505 DWYRLGIQFSHRSGLSGPGGVVSVIDIMTHLARGLWLGSPGFYVEQQTDKNESACPPTIPVLYIYHRSVQCPVLYGSLTE 584 (756)
T ss_dssp HHHHHHHHHHHHTTSSCSSCCSCHHHHHHHHHHHHHHHCCEEECCC---------CCEEECCTTTTSSSCCTTTTCCCC-
T ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCC
T ss_conf 65077600035455456642110565898862376204665321222222133466678603330233347532343345
Q ss_pred ----CCHHHCHHHHHHHHCCCCCC--------------------------HHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf ----50011199999993981389--------------------------879998614888888998874012146899
Q 000380 1206 ----LSASLDMATLEILLGHQFLH--------------------------RGLLLQAFVHPSFNRLGGCYQRLEFLGDAV 1255 (1601)
Q Consensus 1206 ----~~~~~~~~~le~~lgy~F~~--------------------------~~lL~~Alth~S~~~~~~~yerLeflGDav 1255 (1601)
......+..+|++|||+|+| +.||.+||||+| |||||||||||
T Consensus 585 ~~~~~~~~~~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~AlTH~S-------neRLEfLGDaV 657 (756)
T 2qvw_A 585 TPTGPVASKVLALYEKILAYESSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALTPHV-------YQKLELLGDAF 657 (756)
T ss_dssp --CTTTHHHHHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHHSTGG-------GHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC-------CHHHHHHHHHH
T ss_conf 65210346679999999588865763136676654310234333434243899999805754-------05798778999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHCC--CHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 999999999974999992069999999209499999999849--445773069201355643121003789842224799
Q 000380 1256 LDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAFANVAVDQS--FYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGP 1333 (1601)
Q Consensus 1256 L~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~~la~~a~~~g--l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 1333 (1601)
|+++|++|||.+||++++|.||.+|+++|||++||.+|.++| |+++++.+.++. .
T Consensus 658 L~l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e~-----------------------~ 714 (756)
T 2qvw_A 658 LKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKI-----------------------Q 714 (756)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTTC-----------------------C
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHCCCHHH-----------------------C
T ss_conf 99999999997289998679999999995870899999986510999974086121-----------------------4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 998412558999644120138988689999999952222110
Q 000380 1334 RCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKF 1375 (1601)
Q Consensus 1334 ~~pk~l~D~~Ea~iGAi~~D~g~~~~~~~~~~~~~l~~~~~~ 1375 (1601)
..+|++||+|||+|||||+|+|++ .+++|+.+++.|.+..
T Consensus 715 ~~~kilaD~~EAliGAiylD~G~~--~a~~~v~~~~~~~l~~ 754 (756)
T 2qvw_A 715 PDSKVYGDTFEAILAAILLACGEE--AAGAFVREHVLPQVVA 754 (756)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHTGGGCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHC
T ss_conf 785299999999999999967999--9999999999988621
No 2
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=1.00 E-value=1 Score=406.45 Aligned_cols=465 Identities=26% Similarity=0.389 Sum_probs=288.7
Q ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEECCHHHHHHHHHHHHHHC--
Q ss_conf 312204999999999850-6989994696069999999999999996189--99589999178657999999999870--
Q 000380 55 PKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKP--QKSICIFLAPTVALVQQQAKVIEESI-- 129 (1601)
Q Consensus 55 ~~~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~--~~k~vlvLvPt~~Lv~Qq~~~l~~~~-- 129 (1601)
+...||+||.++++.++. +|+|+++|||+|||++|++++.+ .+...+ .+.+++||+||++|+.||.+++++++
T Consensus 10 g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~--~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 10 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH--HLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp C--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH--HHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH--HHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 778866999999999971898899949996099999999999--998475677874999978888999999999998253
Q ss_pred -CCCEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCC-CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHC
Q ss_conf -9819998479876774321886303670999849999998821666-86515299996576443348974999999872
Q 000380 130 -GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFY 207 (1601)
Q Consensus 130 -~l~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~-~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~ 207 (1601)
++++..++|+...... |.....+++|+|+||++|++.+.++.+ .+.++++|||||||++. +.++|..++..++
T Consensus 88 ~~~~v~~~~g~~~~~~~---~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~--~~~~~~~i~~~~l 162 (696)
T 2ykg_A 88 HGYRVTGISGATAENVP---VEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTS--KQHPYNMIMFNYL 162 (696)
T ss_dssp TTCCEEEECSSSCSSSC---HHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCS--TTCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCC---HHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC--CCCCHHHHHHHHH
T ss_conf 88249999588665435---898525999999788999999860766640313189992887546--7653899999999
Q ss_pred CC----CCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE-E-CCHHHHHCCCCCCEEEEEEECCCCCCC
Q ss_conf 99----98999889998134568998763566589999999850581992-0-697778400488729999806888778
Q 000380 208 KP----DIMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYS-V-EDAEDLESFVSSPVVRVYQYGPVINDT 281 (1601)
Q Consensus 208 ~~----~~~~~p~ilgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~~~~-~-~~~~~l~~~~~~p~~~~~~~~~~~~~~ 281 (1601)
.. .....|+++||||||..++..... +....+..+...++..... . .+..++..++..|......+.......
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~~~~~~~~~-~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVGVGDAKTTD-EALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCCCSSCCSHH-HHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHHCCCCCCCCEEEEEECCCCCCCCCCHH-HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf 976313577778699972765667653489-9999999999746984675111343778755489811588557666773
Q ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHH--CC----CCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
Q ss_conf 732-55699999999999999985220--01----3311465999999---------------97666999999622427
Q 000380 282 SSS-YVTCSEQLAEIKREQYISALSRK--LH----DHQSLRNTTKQLN---------------RLHDSMKFCLENLGVCG 339 (1601)
Q Consensus 282 ~~~-~~~l~~~l~~l~~~~~~~~l~~~--~~----~~~~~~~~~~~l~---------------~~~~~~~~~~~~lG~~~ 339 (1601)
... ...+...+..+..... ..+... .. ..+.+........ .....+......+....
T Consensus 242 fs~~~~~l~~~i~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRIC-KDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-TTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999-99987630355553414499999999888888631240456678899889999999976
Q ss_pred HHHHHHHHHCCCHHHH----HHHHHHHCCCCCHHHHHHHHHH----HHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHH
Q ss_conf 9999999720725577----8989741588724899999999----9999988713897786401210038878888999
Q 000380 340 ALHASYILLSGDETMR----NELIEAEGNTIDDSLCRFASQA----SEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLR 411 (1601)
Q Consensus 340 a~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~l~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~ 411 (1601)
. ...+......... ..............+.+.+... ...+.... ......++|+..
T Consensus 321 ~--~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------~~~~~~~~k~~~ 384 (696)
T 2ykg_A 321 D--ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVS--------------RDPSNENPKLED 384 (696)
T ss_dssp H--HHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHH--------------HCGGGCCHHHHH
T ss_pred H--HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--------------CCCCCCCHHHHH
T ss_conf 7--775013065999999999999988641553688999998888788998874--------------078878979999
Q ss_pred HHHHHHHC-CCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEC-----CCCCCCCCHHHHHHHHHHHHC-CC
Q ss_conf 99999531-358980499993324169999999995000113431147720-----478776899999999998724-99
Q 000380 412 LIGILSTF-RLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGV-----NAGLKSMSRNAMKSILEKFRS-GE 484 (1601)
Q Consensus 412 L~~iL~~~-~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~-----~~g~~~~~~~~r~~vl~~Fr~-g~ 484 (1601)
|.+++... ....+.++||||+++.+++.++..|...+.+..+++..+.|. |+ +|+.++|.+++++|++ |+
T Consensus 385 L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~---~~~~~eR~~v~~~F~~~g~ 461 (696)
T 2ykg_A 385 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT---GMTLPAQKCILDAFKASGD 461 (696)
T ss_dssp HHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------------C
T ss_pred HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC---CCCHHHHHHHHHHHHHCCC
T ss_conf 9999999852489984999948079999999999738875530126997158775546---7899999999999873697
Q ss_pred CCEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEE-EEECCCHHHHHHHH
Q ss_conf 32999805543585688866799707998998999986047899970999-99279876899999
Q 000380 485 LNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAF-LVDSGNQRELDLIK 548 (1601)
Q Consensus 485 ~~iLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRAR~g~s~~vi-lv~~~~~~~~~~~~ 548 (1601)
.+|||||+++++|||+|+|++||+||+|+++.+|+||+||+|. +.+.++ ++..++..+...+.
T Consensus 462 ~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GRGR~-~~g~~~~l~~~~~~~~~~~~~ 525 (696)
T 2ykg_A 462 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA-RGSKCFLLTSNAGVIEKEQIN 525 (696)
T ss_dssp CSCSEEEESSCCC---CCCSEEEEESCC--CCCC----------CCCEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEECHHHCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCC-CCCEEEEEECCCCHHHHHHHH
T ss_conf 1379982216408767447889993798988999885264767-786299996688888898877
No 3
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=393.39 Aligned_cols=455 Identities=25% Similarity=0.415 Sum_probs=297.9
Q ss_pred HHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEECCHHHHHHHHHHHHHHC---
Q ss_conf 12204999999999850-6989994696069999999999999996189--99589999178657999999999870---
Q 000380 56 KQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKP--QKSICIFLAPTVALVQQQAKVIEESI--- 129 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~--~~k~vlvLvPt~~Lv~Qq~~~l~~~~--- 129 (1601)
...||+||.++++.+++ +|+|+++|||+|||+++++++.. .+...+ .+++++||+|+++|+.||++.+++++
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~--~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEH--HFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHT--TTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH--HHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 89877999999999980998999969984599999999999--9973655689859999698999999999999971216
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCC-CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 9819998479876774321886303670999849999998821666-865152999965764433489749999998729
Q 000380 130 GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYK 208 (1601)
Q Consensus 130 ~l~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~-~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~ 208 (1601)
++++..++|+.........+ ..+++|+|+||++|.+.+.++.+ .+.++++||+||||++. +.++|..++..+..
T Consensus 324 ~~~v~~~~G~~~~~~~~~~~---~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~--~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 324 GYSVQGISGENFSNVSVEKV---IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT--GNHPYNVLMTRYLE 398 (936)
T ss_dssp TCCEEEECCC-----CCHHH---HHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCS--TTCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCHHHHHHHH---CCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC--CCCCHHHHHHHHHH
T ss_conf 95599997996312578974---16999999449999999871764533678799998731359--98669999999999
Q ss_pred CC---CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEE-EEEC-CHHHHHCCCCCCEEEEEEECCCCCCC-C
Q ss_conf 99---89998899981345689987635665899999998505819-9206-97778400488729999806888778-7
Q 000380 209 PD---IMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKV-YSVE-DAEDLESFVSSPVVRVYQYGPVINDT-S 282 (1601)
Q Consensus 209 ~~---~~~~p~ilgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~~-~~~~-~~~~l~~~~~~p~~~~~~~~~~~~~~-~ 282 (1601)
.. ....+++++|||||..++.... ....+.+..+...++... .+.. +...+..++..|......+....... .
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l-~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 477 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNI-EETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSH-HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH
T ss_pred HHHCCCCCCCEEEEECCCCCCCCCHHH-HHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCEEEECCCCCCCHHH
T ss_conf 863137886739986388554540208-9999999999985497155346544899987536776237733655675799
Q ss_pred CHHHHHHHHHHHHHHHHH---------------------HHHHHHHC-----CCCH-------HHHHHHHHHHHHHHHHH
Q ss_conf 325569999999999999---------------------99852200-----1331-------14659999999766699
Q 000380 283 SSYVTCSEQLAEIKREQY---------------------ISALSRKL-----HDHQ-------SLRNTTKQLNRLHDSMK 329 (1601)
Q Consensus 283 ~~~~~l~~~l~~l~~~~~---------------------~~~l~~~~-----~~~~-------~~~~~~~~l~~~~~~~~ 329 (1601)
.....+...+..+..... +..+.+.. .... .+......+..+ +...
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~-~~al 556 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDAL 556 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 999999999999999887665553202233225779999999999887740553210357999999999999998-8887
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH---HHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCC
Q ss_conf 999962242799999997207255778989741588724899999---99999999887138977864012100388788
Q 000380 330 FCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFA---SQASEVFAAICRRDGIASDLSCIEVLKEPFFS 406 (1601)
Q Consensus 330 ~~~~~lG~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s 406 (1601)
......+.+.+......... .....+ .......+. ......+.... ......+
T Consensus 557 ~i~~~~~~~~~~~~l~~~~~--------~~~~~~--~~~~e~~l~~~~~~~~~~l~~~~--------------~~~~~~~ 612 (936)
T 4a2w_A 557 IISEDARIIDALSYLTEFFT--------NVKNGP--YTELEQHLTAKFQEKEPELIALS--------------KDETNEN 612 (936)
T ss_dssp HHHHHSCHHHHHHHHHHHHH--------HHHHTT--CCHHHHHHHHHHHHHHHHHHHHH--------------TSTTCCC
T ss_pred HHHCCHHHHHHHHHHHHHHH--------HHHHCC--CCHHHHHHHHHHHHHHHHHHHHH--------------HCCCCCC
T ss_conf 50020428889999999999--------876325--88789999998999999999764--------------0567789
Q ss_pred HHHHHHHHHHHH-CCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEC-----CCCCCCCCHHHHHHHHHHH
Q ss_conf 889999999953-1358980499993324169999999995000113431147720-----4787768999999999987
Q 000380 407 KKLLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGV-----NAGLKSMSRNAMKSILEKF 480 (1601)
Q Consensus 407 ~K~~~L~~iL~~-~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~-----~~g~~~~~~~~r~~vl~~F 480 (1601)
+|+..|.++|.. +....+.++||||+++.+++.|+..|...+.+.++++..+.|. |+ +|+..+|.+++++|
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg---~m~~~eR~~il~~F 689 (936)
T 4a2w_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTT---GMTLPSQKGVLDAF 689 (936)
T ss_dssp HHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC---------------------------
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC---CCCHHHHHHHHHHH
T ss_conf 799999999999853589974999969799999999998637353666616996578765678---88999999999986
Q ss_pred HC-CCCCEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHH
Q ss_conf 24-9932999805543585688866799707998998999986047899970999992798768999
Q 000380 481 RS-GELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDL 546 (1601)
Q Consensus 481 r~-g~~~iLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRAR~g~s~~vilv~~~~~~~~~~ 546 (1601)
++ |+++|||||+++++|||+|+|++||+||+|+|+.+|+||+||||.+.+..++++..++..+...
T Consensus 690 r~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GRGR~~~g~vi~Li~~~t~ee~~~ 756 (936)
T 4a2w_A 690 KTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEK 756 (936)
T ss_dssp ----CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC-------CCCEEEEESCHHHHHHHH
T ss_pred HCCCCEEEEEEECCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHH
T ss_conf 3159815999807264277605589899938999889999964877888877999986988999999
No 4
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=391.64 Aligned_cols=458 Identities=25% Similarity=0.418 Sum_probs=296.7
Q ss_pred HHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEECCHHHHHHHHHHHHHHC---
Q ss_conf 12204999999999850-6989994696069999999999999996189--99589999178657999999999870---
Q 000380 56 KQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKP--QKSICIFLAPTVALVQQQAKVIEESI--- 129 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~--~~k~vlvLvPt~~Lv~Qq~~~l~~~~--- 129 (1601)
...||+||.++++.+++ +|+|+++|||+|||+++++++.. .+...+ .+++++||+|+++|+.||.+.+++++
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~--~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEH--HFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH--HHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH--HHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 89999999999999980999899969997299999999999--9984665679969999698999999999999861437
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCC-CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 9819998479876774321886303670999849999998821666-865152999965764433489749999998729
Q 000380 130 GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYK 208 (1601)
Q Consensus 130 ~l~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~-~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~ 208 (1601)
++++..++|+...... |.....+++|+|+||++|.+.+.++.+ .+.++++||+||||++. ..++|..++..+..
T Consensus 324 ~~~v~~~~g~~~~~~~---~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~--~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 324 GYSVQGISGENFSNVS---VEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT--GNHPYNVLMTRYLE 398 (797)
T ss_dssp TCCEEEECCC-----C---HHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCS--TTSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCHHHH---HHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC--CCCCHHHHHHHHHH
T ss_conf 9469999699623246---997407999999766999999982654651337789998863558--87649999999999
Q ss_pred CC---CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCE-EEEEC-CHHHHHCCCCCCEEEEEEECCCCCC-CC
Q ss_conf 99---8999889998134568998763566589999999850581-99206-9777840048872999980688877-87
Q 000380 209 PD---IMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAK-VYSVE-DAEDLESFVSSPVVRVYQYGPVIND-TS 282 (1601)
Q Consensus 209 ~~---~~~~p~ilgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~-~~~~~-~~~~l~~~~~~p~~~~~~~~~~~~~-~~ 282 (1601)
.. ..+.++++||||||..++.... ....+.+..+...++.. +.+.. +...+..++..|......+...... ..
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~-~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 477 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNI-EETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSH-HHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHH
T ss_pred HHHCCCCCCCEEEEECCCCCCCCCCCH-HHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCHHH
T ss_conf 763147887859997277554552248-9999999999985498488545431788997358885488845777786789
Q ss_pred CHHHHHHHHHHHHHHHHHH-HH---HHHHCCCCHHH-----------------------------HHHHHHHHHHHHHHH
Q ss_conf 3255699999999999999-98---52200133114-----------------------------659999999766699
Q 000380 283 SSYVTCSEQLAEIKREQYI-SA---LSRKLHDHQSL-----------------------------RNTTKQLNRLHDSMK 329 (1601)
Q Consensus 283 ~~~~~l~~~l~~l~~~~~~-~~---l~~~~~~~~~~-----------------------------~~~~~~l~~~~~~~~ 329 (1601)
.....+...+..+....+. .. +.......+.+ ......+..+ ....
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~ 556 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDAL 556 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 999999999999999987567765300001140567789999999877740343202567999999999999999-9887
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHH---HHHHHHHHHHHCCCCCCCCCHHHHCCCCCCC
Q ss_conf 9999622427999999972072557789897415887248999999---9999999887138977864012100388788
Q 000380 330 FCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFAS---QASEVFAAICRRDGIASDLSCIEVLKEPFFS 406 (1601)
Q Consensus 330 ~~~~~lG~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s 406 (1601)
......+.+.+......... . ....+ .......+.. .....+.... ......+
T Consensus 557 ~~~~~~~~~~~~~~l~~~~~-------~-~~~~~--~~~~~~~l~~~~~~~~~~l~~~~--------------~~~~~~~ 612 (797)
T 4a2q_A 557 IISEDARIIDALSYLTEFFT-------N-VKNGP--YTELEQHLTAKFQEKEPELIALS--------------KDETNEN 612 (797)
T ss_dssp HHHHHSCHHHHHHHHHHHHH-------H-HHHTT--CCHHHHHHHHHHHTTHHHHHHHH--------------HCTTCCC
T ss_pred HHHCCCCHHHHHHHHHHHHH-------H-HHCCC--CCHHHHHHHHHHHHHHHHHHHHH--------------CCCCCCC
T ss_conf 65413258889999999999-------8-75047--66899999999999999998763--------------0788899
Q ss_pred HHHHHHHHHHHH-CCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEC-----CCCCCCCCHHHHHHHHHHH
Q ss_conf 889999999953-1358980499993324169999999995000113431147720-----4787768999999999987
Q 000380 407 KKLLRLIGILST-FRLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGV-----NAGLKSMSRNAMKSILEKF 480 (1601)
Q Consensus 407 ~K~~~L~~iL~~-~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~-----~~g~~~~~~~~r~~vl~~F 480 (1601)
+|+..|.++|.. +....+.++||||+++.++..|+..|+..+.+.++++..+.|. |+ +|+..+|.+++++|
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg---~~~~~eR~~~l~~F 689 (797)
T 4a2q_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTT---GMTLPSQKGVLDAF 689 (797)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------------
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC---CCCHHHHHHHHHHH
T ss_conf 599999999999850589970899979589999999999747564665521898447754578---98999999999985
Q ss_pred HC-CCCCEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 24-9932999805543585688866799707998998999986047899970999992798768999999
Q 000380 481 RS-GELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKN 549 (1601)
Q Consensus 481 r~-g~~~iLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRAR~g~s~~vilv~~~~~~~~~~~~~ 549 (1601)
++ |+++|||||+++++|||+|+|++||+||+|+|+.+|+||+||+|...+..++|+..++..+...+..
T Consensus 690 ~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GRGR~~~g~~i~l~~~~~~ee~~~~~~ 759 (797)
T 4a2q_A 690 KTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNR 759 (797)
T ss_dssp ----CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC-------CCCEEEEECCHHHHHHHHHHH
T ss_pred HCCCCCEEEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHH
T ss_conf 1369704999748054479751089899948999889999853888787865999972876889999888
No 5
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=388.40 Aligned_cols=459 Identities=26% Similarity=0.428 Sum_probs=297.8
Q ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEECCHHHHHHHHHHHHHHC--
Q ss_conf 312204999999999850-6989994696069999999999999996189--99589999178657999999999870--
Q 000380 55 PKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKP--QKSICIFLAPTVALVQQQAKVIEESI-- 129 (1601)
Q Consensus 55 ~~~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~--~~k~vlvLvPt~~Lv~Qq~~~l~~~~-- 129 (1601)
+...||+||.++++.+++ +|+|+++|||+|||++|++++.. .+...+ .+++++||+|+++|+.||.+.+++++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~--~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEH--HFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH--HHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH--HHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 877877999999999974998999819997189999999999--998374567986999928899999999999987240
Q ss_pred -CCCEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCC-CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHC
Q ss_conf -9819998479876774321886303670999849999998821666-86515299996576443348974999999872
Q 000380 130 -GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFY 207 (1601)
Q Consensus 130 -~l~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~-~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~ 207 (1601)
++++..++|+...... |.....+++|+|+||++|.+.+.++.+ .+.++++||+||||++. +.++|..++..+.
T Consensus 82 ~~~~~~~~~g~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~--~~~~~~~~~~~~~ 156 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVS---VEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT--GNHPYNVLMTRYL 156 (556)
T ss_dssp GTCCEEECCCC-----C---HHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCS--TTSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHH---HHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC--CCCHHHHHHHHHH
T ss_conf 69459998289874222---898617999999889999999983750250307799998875358--8645999999999
Q ss_pred CCC---CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCE-EEEEC-CHHHHHCCCCCCEEEEEEECCCCCCC-
Q ss_conf 999---8999889998134568998763566589999999850581-99206-97778400488729999806888778-
Q 000380 208 KPD---IMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAK-VYSVE-DAEDLESFVSSPVVRVYQYGPVINDT- 281 (1601)
Q Consensus 208 ~~~---~~~~p~ilgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~-~~~~~-~~~~l~~~~~~p~~~~~~~~~~~~~~- 281 (1601)
... ..+.+++++|||||..++.... ....+.+..+...++.. +.+.. +...+..++..|......+.+.....
T Consensus 157 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~-~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (556)
T 4a2p_A 157 EQKFNSASQLPQILGLTASVGVGNAKNI-EETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 235 (556)
T ss_dssp HHHHCC---CCEEEEEESCCCCTTCSSH-HHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHH
T ss_pred HHHHCCCCCCCEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHCCCEEECCHHCCHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf 8530136888769999478566751669-999999999998539848433320267787427998537998278767759
Q ss_pred CCHHHHHHHHHHHHHHHHH---------------------HHHHHHHCC-----CC-------HHHHHHHHHHHHHHHHH
Q ss_conf 7325569999999999999---------------------998522001-----33-------11465999999976669
Q 000380 282 SSSYVTCSEQLAEIKREQY---------------------ISALSRKLH-----DH-------QSLRNTTKQLNRLHDSM 328 (1601)
Q Consensus 282 ~~~~~~l~~~l~~l~~~~~---------------------~~~l~~~~~-----~~-------~~~~~~~~~l~~~~~~~ 328 (1601)
......+.+.+.......+ +..+.+... .. ..+......+..+ ...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 314 (556)
T 4a2p_A 236 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDA 314 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 9999999999999998886320121033334433567899999999877640543201678999999999999999-999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHH---HHHHHHHHHHHCCCCCCCCCHHHHCCCCCC
Q ss_conf 99999622427999999972072557789897415887248999999---999999988713897786401210038878
Q 000380 329 KFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFAS---QASEVFAAICRRDGIASDLSCIEVLKEPFF 405 (1601)
Q Consensus 329 ~~~~~~lG~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1601)
.......+.+.+........ ..............+.. .....+..... .....
T Consensus 315 ~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~ 370 (556)
T 4a2p_A 315 LIISEDARIIDALSYLTEFF----------TNVKNGPYTELEQHLTAKFQEKEPELIALSK--------------DETNE 370 (556)
T ss_dssp HHHHHHSCHHHHHHHHHHHH----------HHHHHSCCCHHHHHHHHHHHTTHHHHHHHHH--------------CSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC--------------CCCCC
T ss_conf 98861120789999999999----------9987337987899999987667887642103--------------78999
Q ss_pred CHHHHHHHHHHHHC-CCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEC-----CCCCCCCCHHHHHHHHHH
Q ss_conf 88899999999531-358980499993324169999999995000113431147720-----478776899999999998
Q 000380 406 SKKLLRLIGILSTF-RLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGV-----NAGLKSMSRNAMKSILEK 479 (1601)
Q Consensus 406 s~K~~~L~~iL~~~-~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~-----~~g~~~~~~~~r~~vl~~ 479 (1601)
++|+..|.++|... ....+.++||||+++.+++.++..|...+...++++..+.|. |+ +|+..+|..++++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~R~~~~~~ 447 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTT---GMTLPSQKGVLDA 447 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC---CCCHHHHHHHHHH
T ss_conf 9699999999999834799854999976589999999999858775500014787367765565---6698999999998
Q ss_pred HHC-CCCCEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 724-9932999805543585688866799707998998999986047899970999992798768999999
Q 000380 480 FRS-GELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKN 549 (1601)
Q Consensus 480 Fr~-g~~~iLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRAR~g~s~~vilv~~~~~~~~~~~~~ 549 (1601)
|++ |+++|||||+++++|||+|+|++||+||+|+|+.+|+||+||||.+.+..++|+..++..+...+..
T Consensus 448 F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~~l~~~~~~~~~~~~~~ 518 (556)
T 4a2p_A 448 FKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNR 518 (556)
T ss_dssp ------CCEEEEEC-----------CEEEEETCCSCHHHHHHC--------CCEEEEESCHHHHHHHHHHH
T ss_pred HCCCCCEEEEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHH
T ss_conf 40469658999767043377752178899918999788998863878788841899982763677777557
No 6
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=1.00 E-value=1 Score=381.94 Aligned_cols=465 Identities=26% Similarity=0.414 Sum_probs=291.5
Q ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCCEEEEEECCHHHHHHH-HHHHHHHCC-
Q ss_conf 312204999999999850-6989994696069999999999999996-189995899991786579999-999998709-
Q 000380 55 PKQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLI-RKPQKSICIFLAPTVALVQQQ-AKVIEESIG- 130 (1601)
Q Consensus 55 ~~~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~-~~~~~k~vlvLvPt~~Lv~Qq-~~~l~~~~~- 130 (1601)
+.+.||+||.++++.+++ +|+|+++|||+|||++|++++..+.... ....+++++||+|+++|+.|| .++++++++
T Consensus 4 ~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 77772488999999998379999986999868999999999999846455788809999799999999999999997176
Q ss_pred -CCEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHH------HCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf -8199984798767743218863036709998499999988------216668651529999657644334897499999
Q 000380 131 -FKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCL------YHRFIKMELIALLIFDECHHAQVKSNHPYAKIM 203 (1601)
Q Consensus 131 -l~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l------~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im 203 (1601)
+++..++|+.........+ ....+|+|+||++|.+.+ ....+.+.++++|||||||++. ..+.|..++
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~---~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~--~~~~~~~i~ 158 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEV---VKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN--KEAVYNNIM 158 (699)
T ss_dssp TSCEEEEC----CCCCHHHH---HHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCB--TTBSSCSHH
T ss_pred CCEEEEEECCCCHHHHHHHH---HCCCCEEEECHHHHHHHHHCCCCCCCCCEECCCCCEEEEECCCCCC--CCCHHHHHH
T ss_conf 71499985783221577765---2379999989899999974343343351212547689997731147--665399999
Q ss_pred HHHCCCC------------CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC-EEEEEC-CHHHHHCCCCCCEE
Q ss_conf 9872999------------899988999813456899876356658999999985058-199206-97778400488729
Q 000380 204 KDFYKPD------------IMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDA-KVYSVE-DAEDLESFVSSPVV 269 (1601)
Q Consensus 204 ~~~~~~~------------~~~~p~ilgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~-~~~~~~-~~~~l~~~~~~p~~ 269 (1601)
..+.... ..+.|++++|||||..+..... ......+..+...++. .+.+.. +...+..++..|..
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~-~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~ 237 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQ-AKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCK 237 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSH-HHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEE
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCH-HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCE
T ss_conf 99998543145544344567888879974366554554467-99999999998516987788524856777643689865
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHH---------------HHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999806888778732556999999999999---------------999852200--133114659999999766699999
Q 000380 270 RVYQYGPVINDTSSSYVTCSEQLAEIKREQ---------------YISALSRKL--HDHQSLRNTTKQLNRLHDSMKFCL 332 (1601)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~---------------~~~~l~~~~--~~~~~~~~~~~~l~~~~~~~~~~~ 332 (1601)
....+....... ....+......+.... .+..+.... ............++.+ +......
T Consensus 238 ~~~~~~~~~~~~--~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 314 (699)
T 4gl2_A 238 KFAIADATREDP--FKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKY-NEALQIN 314 (699)
T ss_dssp EEEEEC-----C--HHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHH-HHHHHHH
T ss_pred EEEECCCCCCCH--HHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf 999746666771--7999999999999885558522116067889999998888775321558999998878-7889888
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC--CCHHHHHHHHHHH----HHHHHHHHCCCCCCCCCHHHHCCCCCCC
Q ss_conf 962242799999997207255778989741588--7248999999999----9999887138977864012100388788
Q 000380 333 ENLGVCGALHASYILLSGDETMRNELIEAEGNT--IDDSLCRFASQAS----EVFAAICRRDGIASDLSCIEVLKEPFFS 406 (1601)
Q Consensus 333 ~~lG~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~l~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~s 406 (1601)
..++.+.+...................+..... .-.....++.... ..+...... ....+
T Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~--------------~~~~~ 380 (699)
T 4gl2_A 315 DTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAEN--------------PEYEN 380 (699)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTC--------------CC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC--------------CCCCC
T ss_conf 7888898999999999998753102223332101123626899999898878999998646--------------77788
Q ss_pred HHHHHHHHHHHH-CCCCC-CCEEEEEECCHHHHHHHHHHHHHCCCCC--CCCCCEEEECCCC--CCCCCHHHHHHHHHHH
Q ss_conf 889999999953-13589-8049999332416999999999500011--3431147720478--7768999999999987
Q 000380 407 KKLLRLIGILST-FRLQQ-HMKCIVFVNRIVTARALSYILQNLKFLA--SWRCHFLVGVNAG--LKSMSRNAMKSILEKF 480 (1601)
Q Consensus 407 ~K~~~L~~iL~~-~~~~~-~~~~IIFv~~r~~a~~L~~~L~~~~~~~--~~~~~~~vg~~~g--~~~~~~~~r~~vl~~F 480 (1601)
+|+..|.++|.. +.... +.++||||+++.+++.|+..|...+.+. ++++..+.|-+++ ..+|+..+|.+++++|
T Consensus 381 ~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F 460 (699)
T 4gl2_A 381 EKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKF 460 (699)
T ss_dssp -CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 79999999999997147999819999792999999999997473322368644999778876677788999999999998
Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCHH
Q ss_conf 24993299980554358568886679970799899899998604789997099999279876
Q 000380 481 RSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQR 542 (1601)
Q Consensus 481 r~g~~~iLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRAR~g~s~~vilv~~~~~~ 542 (1601)
++|+++|||||+++++|||+|+|++||+||+|+|+.+|+||+||||.+++.++++...++..
T Consensus 461 ~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g~~~~l~~~~~~~~ 522 (699)
T 4gl2_A 461 RTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGV 522 (699)
T ss_dssp CC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSSCEEEEEEESSSCS
T ss_pred HCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEECCCHH
T ss_conf 66997589974641268756348889994799998999887087889996699998178568
No 7
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=1.00 E-value=1 Score=381.89 Aligned_cols=457 Identities=27% Similarity=0.413 Sum_probs=294.8
Q ss_pred HHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEECCHHHHHHHHHHHHHHC---
Q ss_conf 12204999999999850-6989994696069999999999999996189--99589999178657999999999870---
Q 000380 56 KQIARKYQLELCKKAME-ENIIVYLGTGCGKTHIAVLLIYELAHLIRKP--QKSICIFLAPTVALVQQQAKVIEESI--- 129 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~al~-~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~--~~k~vlvLvPt~~Lv~Qq~~~l~~~~--- 129 (1601)
.+.||+||.++++.+++ +|+|+++|||+|||++|++++.+ .+...+ .+++++||+||++|+.||.+.+++++
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~--~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEH--HLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH--HHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH--HHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 98876999999999967998899959998399999999999--9984666789879999688899999999999870538
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCC-CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 9819998479876774321886303670999849999998821666-865152999965764433489749999998729
Q 000380 130 GFKVRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFI-KMELIALLIFDECHHAQVKSNHPYAKIMKDFYK 208 (1601)
Q Consensus 130 ~l~v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~-~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~ 208 (1601)
++++..++|+...... |.....+++|+|+||+++.+.+.++.+ .+.++++||+||||++. +.++|..++..+..
T Consensus 80 ~~~~~~~~g~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~--~~~~~~~~~~~~~~ 154 (555)
T 3tbk_A 80 GYNIASISGATSDSVS---VQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTS--KNHPYNQIMFRYLD 154 (555)
T ss_dssp TCCEEEECTTTGGGSC---HHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCS--TTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHH---HHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC--CCCHHHHHHHHHHH
T ss_conf 9479997599740122---898736999999789999999860763440107789997754568--73349999999997
Q ss_pred CC----CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC-EEEEEC-CHHHHHCCCCCCEEEEEEECCCCCCC-
Q ss_conf 99----899988999813456899876356658999999985058-199206-97778400488729999806888778-
Q 000380 209 PD----IMKVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDA-KVYSVE-DAEDLESFVSSPVVRVYQYGPVINDT- 281 (1601)
Q Consensus 209 ~~----~~~~p~ilgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~-~~~~~~-~~~~l~~~~~~p~~~~~~~~~~~~~~- 281 (1601)
.. ....+++++|||||..++.... ....+.+..+...+++ .+.+.. +...+..++..|......+.+.....
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGVGDAKTA-EEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTF 233 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCCTTCCSH-HHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHH
T ss_pred HHHCCCCCCCCEEEEEECCCCCCCCCCH-HHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 5411246888739999267666765229-999999999998569806633235788898646998269998267666719
Q ss_pred CCHHHHHHHHHHHHHHHHH--HHHHHHHCCC---CH-----------------------------HHHHHHHHHHHHHHH
Q ss_conf 7325569999999999999--9985220013---31-----------------------------146599999997666
Q 000380 282 SSSYVTCSEQLAEIKREQY--ISALSRKLHD---HQ-----------------------------SLRNTTKQLNRLHDS 327 (1601)
Q Consensus 282 ~~~~~~l~~~l~~l~~~~~--~~~l~~~~~~---~~-----------------------------~~~~~~~~l~~~~~~ 327 (1601)
......+...+..+....+ ...+...... .+ .+......++.+ ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 312 (555)
T 3tbk_A 234 KCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKY-ND 312 (555)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HH
T ss_conf 99999999999999999987654443122333441024689999998766650466046778999999999999999-99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH---HHHHHHHHCCCCCCCCCHHHHCCCCC
Q ss_conf 999999622427999999972072557789897415887248999999999---99998871389778640121003887
Q 000380 328 MKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLCRFASQAS---EVFAAICRRDGIASDLSCIEVLKEPF 404 (1601)
Q Consensus 328 ~~~~~~~lG~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~ 404 (1601)
........+.+.+........ ..............+..... ..+.... .....
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 368 (555)
T 3tbk_A 313 ALIISEDAQMTDALNYLKAFF----------HDVREAAFDETERELTRRFEEKLEELEKVS--------------RDPSN 368 (555)
T ss_dssp HHHHHHHSCHHHHHHHHHHHH----------HHHCC-----HHHHHHHHHHTTHHHHHHHH--------------HCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHCCCCHHHHHHHHHHHHHHHHHHHHC--------------CCCCC
T ss_conf 875220022799999999999----------987633666678999999864556665420--------------47776
Q ss_pred CCHHHHHHHHHHHHC-CCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEC-----CCCCCCCCHHHHHHHHH
Q ss_conf 888899999999531-358980499993324169999999995000113431147720-----47877689999999999
Q 000380 405 FSKKLLRLIGILSTF-RLQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGV-----NAGLKSMSRNAMKSILE 478 (1601)
Q Consensus 405 ~s~K~~~L~~iL~~~-~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~-----~~g~~~~~~~~r~~vl~ 478 (1601)
.++|+..|.++|... ....+.++||||+++.+++.++..|...+...++++..+.|. |+ +|+.++|.++++
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~R~~~~~ 445 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRAT---GMTLPAQKCVLE 445 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC---CCCHHHHHHHHH
T ss_conf 89899999999999715689966999967689999999999628676730024897058753345---668899999999
Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEE-EEECCCHHHHHHHHH
Q ss_conf 8724-9932999805543585688866799707998998999986047899970999-992798768999999
Q 000380 479 KFRS-GELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAF-LVDSGNQRELDLIKN 549 (1601)
Q Consensus 479 ~Fr~-g~~~iLVaT~vleeGIDip~~~~VI~fd~p~s~~~yiQr~GRAR~g~s~~vi-lv~~~~~~~~~~~~~ 549 (1601)
+|++ |+++|||||+++++|||+|+|++||+||+|+|+.+|+||+||||. ..+.++ |+..++..+...+..
T Consensus 446 ~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GRgR~-~~g~~~~l~~~~~~~~~~~~~~ 517 (555)
T 3tbk_A 446 AFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRA-RDSKCFLLTSSADVIEKEKANM 517 (555)
T ss_dssp ------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCCCTT-TSCEEEEEESCHHHHHHHHHHH
T ss_pred HHHCCCCEEEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCC-CCCEEEEEECCCCHHHHHHHHH
T ss_conf 97427971399981605327866037989991799977887775276767-8955999975877778998744
No 8
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=349.45 Aligned_cols=432 Identities=26% Similarity=0.325 Sum_probs=269.5
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCC---C
Q ss_conf 1220499999999985069899946960699999999999999961899958999917865799999999987098---1
Q 000380 56 KQIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIGF---K 132 (1601)
Q Consensus 56 ~~~~R~yQ~e~~~~al~~n~Ii~~pTGsGKTlia~l~i~~l~~~~~~~~~k~vlvLvPt~~Lv~Qq~~~l~~~~~l---~ 132 (1601)
...||+||.++++.++++++|+++|||+|||+++++++..... ..+++++|++|+++|+.||.++++++++. +
T Consensus 7 ~~~l~~~Q~~~i~~~~~~~~ll~~~tG~GKT~~~~~~~~~~~~----~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLT----KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp HHCCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHH----HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 8786399999999996199899918998789999999999986----479859999788899999999999874756111
Q ss_pred EEEEECCCCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99984798767743218863036709998499999988216668651529999657644334897499999987299989
Q 000380 133 VRTFCGGSKRLKSHCDWEKEIDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHHAQVKSNHPYAKIMKDFYKPDIM 212 (1601)
Q Consensus 133 v~~~~G~~~~~~~~~~w~~~~~~~~ViV~Tpq~Ll~~l~~~~~~l~~i~liViDEaH~~~~~~~~~y~~Im~~~~~~~~~ 212 (1601)
+..++|+.........|. +++|+|+||+.+.+.+.++.+.+.++++||+||||++. ..+.+..++..+... .
T Consensus 83 v~~~~g~~~~~~~~~~~~----~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~--~~~~~~~~~~~~~~~--~ 154 (494)
T 1wp9_A 83 IVALTGEKSPEERSKAWA----RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAV--GNYAYVFIAREYKRQ--A 154 (494)
T ss_dssp EEEECSCSCHHHHHHHHH----HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCS--TTCHHHHHHHHHHHH--C
T ss_pred EEEEECCCCHHHHHHHCC----CCCEEEECHHHHHHHHHCCCCCHHHCEEEEEECCCCCC--CCCCHHHHHHHHHHC--C
T ss_conf 687607753355665335----79899963999999986087156541089997875668--888199999999732--8
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE--CCHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 998899981345689987635665899999998505819920--697778400488729999806888778732556999
Q 000380 213 KVPRIFGMTASPVVGKGASAQANLPKSINSLENLLDAKVYSV--EDAEDLESFVSSPVVRVYQYGPVINDTSSSYVTCSE 290 (1601)
Q Consensus 213 ~~p~ilgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~~~~~--~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~ 290 (1601)
+.+++++|||||..+ ...+..+...++...... .....+..+............. ......+..
T Consensus 155 ~~~~~l~lTaTp~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 220 (494)
T 1wp9_A 155 KNPLVIGLTASPGST---------PEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDL-----PEIYKEVRK 220 (494)
T ss_dssp SSCCEEEEESCSCSS---------HHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECC-----CHHHHHHHH
T ss_pred CCCEEEEEECCCCCC---------CHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCCCEEEEECCC-----CHHHHHHHH
T ss_conf 877699995699888---------578999998507000502678758788752787426895688-----588999999
Q ss_pred HHHHHHHHHHHHHHHH-HCCC-------CHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH
Q ss_conf 9999999999998522-0013-------31146599999997666--------------------999999622427999
Q 000380 291 QLAEIKREQYISALSR-KLHD-------HQSLRNTTKQLNRLHDS--------------------MKFCLENLGVCGALH 342 (1601)
Q Consensus 291 ~l~~l~~~~~~~~l~~-~~~~-------~~~~~~~~~~l~~~~~~--------------------~~~~~~~lG~~~a~~ 342 (1601)
.+........ ..+.. .... ...+......+...... ........+......
T Consensus 221 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (494)
T 1wp9_A 221 LLREMLRDAL-KPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRA 299 (494)
T ss_dssp HHHHHHHHHH-HHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 8989999999-999973556545777335578999999998753356311347999988888999999998525799999
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCHHHH-----HHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99997207255778989741588724899-----9999999999988713897786401210038878888999999995
Q 000380 343 ASYILLSGDETMRNELIEAEGNTIDDSLC-----RFASQASEVFAAICRRDGIASDLSCIEVLKEPFFSKKLLRLIGILS 417 (1601)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~iL~ 417 (1601)
.... +............. ..+.+....+.... .....++|+..|.+++.
T Consensus 300 ~~~~-----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~k~~~l~~~l~ 353 (494)
T 1wp9_A 300 YIKK-----------LYEEAKAGSTKASKEIFSDKRMKKAISLLVQAK---------------EIGLDHPKMDKLKEIIR 353 (494)
T ss_dssp HHHH-----------HHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHH---------------HHTCSCHHHHHHHHHHH
T ss_pred HHHH-----------HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH---------------HCCCCCHHHHHHHHHHH
T ss_conf 9999-----------987522321145566665078898999999887---------------45899869999999999
Q ss_pred HCC-CCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCC--CCCCCCHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 313-5898049999332416999999999500011343114772047--8776899999999998724993299980554
Q 000380 418 TFR-LQQHMKCIVFVNRIVTARALSYILQNLKFLASWRCHFLVGVNA--GLKSMSRNAMKSILEKFRSGELNLLVATKVG 494 (1601)
Q Consensus 418 ~~~-~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~~vg~~~--g~~~~~~~~r~~vl~~Fr~g~~~iLVaT~vl 494 (1601)
... ...+.++||||+++.++..+++.|...+. .+..+.|..+ +..+++..+|.+++++|++|+.++||||+++
T Consensus 354 ~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~----~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~ 429 (494)
T 1wp9_A 354 EQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI----KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVG 429 (494)
T ss_dssp HHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC----CEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGG
T ss_pred HHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCC----CCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 984368997599997668999999999997599----8079965665444445899999999999866994699988841
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHCC-CCCCCEEEEEEECCCHHHH
Q ss_conf 3585688866799707998998999986047-8999709999927987689
Q 000380 495 EEGLDIQTCCLVIRFDLPETVASFIQSRGRA-RMPQSEYAFLVDSGNQREL 544 (1601)
Q Consensus 495 eeGIDip~~~~VI~fd~p~s~~~yiQr~GRA-R~g~s~~vilv~~~~~~~~ 544 (1601)
++|||+|+|++||+||+|+|+..|+||+||| |.|+...+.++..++.++.
T Consensus 430 ~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~ee~ 480 (494)
T 1wp9_A 430 EEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEA 480 (494)
T ss_dssp GGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTSHHHH
T ss_pred CCCCCCHHCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHHH
T ss_conf 258871437989992898878999998752257788469999956987899
No 9
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=1.00 E-value=1 Score=349.29 Aligned_cols=235 Identities=37% Similarity=0.562 Sum_probs=196.3
Q ss_pred HCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHH
Q ss_conf 11999999939813898799986148888889--9887401214689999999999997499999206999999920949
Q 000380 1210 LDMATLEILLGHQFLHRGLLLQAFVHPSFNRL--GGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQ 1287 (1601)
Q Consensus 1210 ~~~~~le~~lgy~F~~~~lL~~Alth~S~~~~--~~~yerLeflGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~ 1287 (1601)
.++..||++|||+|+|+.||.+||||+||... ..|||||||||||||+++|++|||.+||++++|.||.+|+++|||.
T Consensus 13 ~~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~ 92 (265)
T 3c4b_A 13 SGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNT 92 (265)
T ss_dssp TTHHHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 78999999959805988899998268576778888750768887699999999999998589999788799999997559
Q ss_pred HHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHC-CCC------------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999999984944577306920135564312100-378------------9842224799998412558999644120138
Q 000380 1288 AFANVAVDQSFYKFLIFDSNVLSETINNYVDYM-ITP------------SSTREVKEGPRCPKVLGDLVESSLGAILLDS 1354 (1601)
Q Consensus 1288 ~la~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~-~~~------------~~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~ 1354 (1601)
+||.+|.++||++++++.++.+...+..|+... ... ........+...||+++|+|||+|||||+|+
T Consensus 93 ~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~laD~~EAliGAiylD~ 172 (265)
T 3c4b_A 93 IFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDS 172 (265)
T ss_dssp HHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHEEEEC
T ss_conf 99999998495999872284679999999998765421000147765210012220234451499999999761501226
Q ss_pred CCCHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCH
Q ss_conf 988689999999952222110--367877268999998316997532013579849999999312477027699973799
Q 000380 1355 GFNLNTVWKIMLSFLDPILKF--SNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVTGKDKDVFISACATNLSR 1432 (1601)
Q Consensus 1355 g~~~~~~~~~~~~~l~~~~~~--~~~~~~P~~~L~e~~~~~~~~~~~~~~~~~~~f~~~v~v~~~~~~~~~~~~g~g~sk 1432 (1601)
|++++.+|+|+.+++.|.+.. ...+++|+++|++++++... +......+++.|++.|.|++.. .+.|.|+||
T Consensus 173 G~~~~~~~~~i~~~~~~~i~~~~~~~~k~~l~el~~~~~~~~~-~~~~~~~~~~~f~v~v~v~~~~-----~~~G~G~Sk 246 (265)
T 3c4b_A 173 GMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPETAK-FSPAERTYDGKVRVTVEVVGKG-----KFKGVGRSY 246 (265)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHCTTTEE-ECCCEECTTSCEEEEEEETTTE-----EEEEEESSH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCE-EEECCCCCCCCEEEEEEEECCE-----EEEEEECCH
T ss_conf 9988999999999999999867641798889999986568864-6304505788389999994434-----899860999
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999982433
Q 000380 1433 KEAIRIASQQLFSKLKAA 1450 (1601)
Q Consensus 1433 k~Ak~~AA~~AL~~L~~~ 1450 (1601)
|+|++.||+.||+.|+..
T Consensus 247 K~Aeq~AA~~AL~~l~~~ 264 (265)
T 3c4b_A 247 RIAKSAAARRALRSLKAN 264 (265)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999998647
No 10
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=1.00 E-value=1 Score=346.02 Aligned_cols=211 Identities=30% Similarity=0.413 Sum_probs=155.2
Q ss_pred HCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHH
Q ss_conf 11999999939813898799986148888889988740121468999999999999749999920699999992094999
Q 000380 1210 LDMATLEILLGHQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMLVNNQAF 1289 (1601)
Q Consensus 1210 ~~~~~le~~lgy~F~~~~lL~~Alth~S~~~~~~~yerLeflGDavL~~~v~~~l~~~~p~~~~~~lt~~r~~lv~n~~l 1289 (1601)
.++..||++|||+|+|+.||.+||||+||.. ..+||||||||||||+++|+++||.+||+.++|.|+.+|+.+|||.+|
T Consensus 26 ~~l~~le~~lgy~F~~~~LL~~AlTH~S~~~-~~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~~L 104 (248)
T 3n3w_A 26 KNIEKLEQSLTYEFKDKNLLIHALTHKSFKK-SYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSF 104 (248)
T ss_dssp TTHHHHHHHHTCCCSSHHHHHHHTBCTTSBT-TBCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHH
T ss_conf 8999999997889799899999965867799-997379999779999999999999728998978999999999799999
Q ss_pred HHHHHHCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999849445773069201355643121003789842224799998412558999644120138988689999999952
Q 000380 1290 ANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFL 1369 (1601)
Q Consensus 1290 a~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pk~l~D~~Ea~iGAi~~D~g~~~~~~~~~~~~~l 1369 (1601)
|.+|.++||+++++.+.... ...+...+|+++|+|||+|||||+|+|++ .+++|+.+++
T Consensus 105 a~~a~~lgL~~~l~~~~~e~-------------------~~~g~~~~~~lad~fEAliGAiyld~G~~--~~~~~i~~~~ 163 (248)
T 3n3w_A 105 AKIANSLNLGDFILMSVAEE-------------------NNGGKEKPSILSDALEAIIGAIHLEAGFE--FAKTIALRLI 163 (248)
T ss_dssp HHHHHHTTGGGTCBCCHHHH-------------------HTTGGGCHHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHCCCHHH-------------------HCCCCCCCCHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHH
T ss_conf 99999858188731585254-------------------34899996489999999999999987869--9999999999
Q ss_pred HHHHHCC---CCCCCHHHHHHHHHHHCCCCCCCCC------CCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHH
Q ss_conf 2221103---6787726899999831699753201------357984999999931247702769997379999999999
Q 000380 1370 DPILKFS---NLQLNPIRELLELCNSYDLDLQFPS------LKKGGKFLAEAKVTGKDKDVFISACATNLSRKEAIRIAS 1440 (1601)
Q Consensus 1370 ~~~~~~~---~~~~~P~~~L~e~~~~~~~~~~~~~------~~~~~~f~~~v~v~~~~~~~~~~~~g~g~skk~Ak~~AA 1440 (1601)
.|.+... ...+|||+.|||||++.++..+.|. +.|.+.|+|.|.|++.. .+.|.|.|||+|++.||
T Consensus 164 ~~~l~~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~-----~~~G~G~SKK~Aeq~AA 238 (248)
T 3n3w_A 164 EKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKE-----LARAIAGSKKEAQQMAA 238 (248)
T ss_dssp HHHCC---------------------------------------------------------------------------
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCEE-----EEEEEECCHHHHHHHHH
T ss_conf 9999875011222287999999999728999826886410799896399999999999-----99966489999999999
Q ss_pred HHHHHHH
Q ss_conf 9999982
Q 000380 1441 QQLFSKL 1447 (1601)
Q Consensus 1441 ~~AL~~L 1447 (1601)
+.||+.|
T Consensus 239 ~~AL~~L 245 (248)
T 3n3w_A 239 KIALEKL 245 (248)
T ss_dssp -------
T ss_pred HHHHHHH
T ss_conf 9999998
Done!