Query 000382
Match_columns 1597
No_of_seqs 204 out of 370
Neff 4.6
Searched_HMMs 13730
Date Tue Mar 26 17:57:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000382.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_159-163//hhsearch_scop/000382hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 4.3 86 0.0062 4.1 1.9 34 971-1004 93-129 (328)
2 d1c3da_ a.102.4.4 (A:) C3D, a 2.7 1.5E+02 0.011 2.1 0.5 12 844-855 240-251 (294)
3 d2gl5a1 c.1.11.2 (A:123-400) P 2.4 1.7E+02 0.012 1.8 0.5 105 909-1040 107-212 (278)
4 d1wlna1 b.26.1.2 (A:8-114) Afa 2.3 1.8E+02 0.013 1.5 2.4 44 954-998 19-73 (107)
5 d1t8ha_ d.194.1.2 (A:) Hypothe 2.2 1.9E+02 0.014 1.4 1.8 30 1071-1109 2-49 (272)
6 d1n0ua4 d.58.11.1 (A:482-560) 2.2 1.9E+02 0.014 1.4 2.3 41 888-929 1-43 (79)
7 d2p62a1 e.67.1.1 (A:1-241) Hyp 2.1 2E+02 0.015 1.2 1.3 110 962-1076 32-149 (241)
8 d1x68a1 g.39.1.3 (A:8-36) Four 2.0 2.2E+02 0.016 0.9 0.5 8 1280-1287 11-18 (29)
9 d2qalf1 d.58.14.1 (F:1-100) Ri 1.8 1E+02 0.0076 3.4 -1.8 42 1054-1098 43-84 (100)
10 d1jaea1 b.71.1.1 (A:379-471) A 1.8 2.1E+02 0.015 1.1 -0.3 13 975-987 9-21 (93)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.27 E-value=86 Score=4.11 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=23.5
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCC---CCCHHHHHH
Q ss_conf 8986573212332024331101477---302189985
Q 000382 971 EGKPENQNHAVIFTRGNAIQTIDMN---QDNYFEEAL 1004 (1597)
Q Consensus 971 eGKpeNQNhAiiFtRGe~lQtIDmN---QDnYlEE~l 1004 (1597)
.|.+...|.++--++||++-.+|.- ..+++|+.+
T Consensus 93 ~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~ 129 (328)
T d1xhba2 93 SGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 129 (328)
T ss_dssp CCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHH
T ss_conf 3216887899986311002201765566736999999
No 2
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.66 E-value=1.5e+02 Score=2.15 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=5.7
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999986208
Q 000382 844 KALMLQAYLERM 855 (1597)
Q Consensus 844 ~Al~ll~~~e~~ 855 (1597)
.|+-|++.++..
T Consensus 240 ta~alla~~~~~ 251 (294)
T d1c3da_ 240 TSYALLALLQLK 251 (294)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
T ss_conf 999999997458
No 3
>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]}
Probab=2.42 E-value=1.7e+02 Score=1.75 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=56.4
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 47599999849683799730233334896551799987504788841115884259998668898657321233202433
Q 000382 909 AADIALLMQRNEALRVAFIDDVETLKDGKVHREFYSKLVKGDINGKDKEIYSIKLPGNPKLGEGKPENQNHAVIFTRGNA 988 (1597)
Q Consensus 909 a~~i~~Lm~~~p~LrVAYide~~~~~~~~~~~~yyS~Li~~~~~g~~~~~yrikLpG~pilGeGKpeNQNhAiiFtRGe~ 988 (1597)
.++...++++-..+.+.+++|+-.. + +.. +..+ -|=+.+-|...||.-..-+...-....|-.
T Consensus 107 ~~~Ai~~~~~L~~~~l~wiEePi~~-~---d~~-----------~~~~--L~~~~~ipIa~gE~~~~~~~~~~~i~~~a~ 169 (278)
T d2gl5a1 107 TNSAIQFAKAIEKYRIFLYEEPIHP-L---NSD-----------NMQK--VSRSTTIPIATGERSYTRWGYRELLEKQSI 169 (278)
T ss_dssp HHHHHHHHHHHGGGCEEEEECSSCS-S---CHH-----------HHHH--HHHHCSSCEEECTTCCTTHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHCCCCCCEECCCCCC-C---CHH-----------HHHH--HCCCCCCCEECCCCCCCHHHHHHHHCCCCC
T ss_conf 1156778877513432100366322-3---535-----------5543--010324533225554785787654203541
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCCCHHHH
Q ss_conf -1101477302189985112158977420799996585023302116611110
Q 000382 989 -IQTIDMNQDNYFEEALKMRNLLEEFHADHGIRPPTILGVREHVFTGSVSSLA 1040 (1597)
Q Consensus 989 -lQtIDmNQDnYlEE~lKmRnlL~Ef~~~~~~~~~~IlG~RE~IFt~~v~~La 1040 (1597)
+=-+|...-+=+-|++|+.++.+++.- ++++ |-+.+.++..|
T Consensus 170 di~~~d~~~~GGit~~~kia~la~~~gi-----~v~~-----H~~~~~i~~~a 212 (278)
T d2gl5a1 170 AVAQPDLCLCGGITEGKKICDYANIYDT-----TVQV-----HVCGGPVSTVA 212 (278)
T ss_dssp SEECCCTTTTTHHHHHHHHHHHHHTTTC-----EECC-----CCCSSHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCC-----CCCC-----CCCCCCHHHHH
T ss_conf 2675312100563667776545544033-----4456-----56667501100
No 4
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.27 E-value=1.8e+02 Score=1.49 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=25.7
Q ss_pred CCCEEEEEECCCCCCCCCCCC-----------CCCCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 411158842599986688986-----------573212332024331101477302
Q 000382 954 KDKEIYSIKLPGNPKLGEGKP-----------ENQNHAVIFTRGNAIQTIDMNQDN 998 (1597)
Q Consensus 954 ~~~~~yrikLpG~pilGeGKp-----------eNQNhAiiFtRGe~lQtIDmNQDn 998 (1597)
....+|+++ +|...+|-|++ --..||.|-..++.+...|.+..|
T Consensus 19 ~~~~~~~l~-~~~~~iG~~rs~~~dI~L~~~~Vs~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 19 DKPKLYRLQ-LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp SCCCEEECC-SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESSSCEEEEESCSSS
T ss_pred CCCEEEEEC-CCCEEECCCCCCCCCEEECCCCEEEEEEEEEECCCCCEEECCCCCC
T ss_conf 864899979-9987999987899849989965332199999724631995278886
No 5
>d1t8ha_ d.194.1.2 (A:) Hypothetical protein YlmD {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.21 E-value=1.9e+02 Score=1.38 Aligned_cols=30 Identities=37% Similarity=0.630 Sum_probs=0.0
Q ss_pred CCCCC------------------CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 95432------------------1021246863322100123032210000002573
Q 000382 1071 PDVFD------------------RVFHITRGGISKASRVINISEDIYAGFNTTLRQG 1109 (1597)
Q Consensus 1071 PDvfd------------------~~f~~trGGvSKAsk~l~lsEDIfaG~n~~lRgG 1109 (1597)
||+++ .-|.+-.|||||. .|+++|.-..-|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~v~~gfttR~GGvS~~---------p~~slNl~~~vg 49 (272)
T d1t8ha_ 2 PDIFQQEARGWLRCGAPPFAGAVAGLTTKHGGESKG---------PFASLNMGLHVG 49 (272)
T ss_dssp CCSEEECSSSEEEECCGGGTTSEEEEECSCSCCCCG---------GGCSCCCCSSSS
T ss_pred CCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCC---------CCCCCCCCCCCC
T ss_conf 622331146841589988899879986799884789---------777612779999
No 6
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.21 E-value=1.9e+02 Score=1.38 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCCE--EEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 4539--99863157889687510475999998496837997302
Q 000382 888 KFTY--VVTSQIYGKQKEDQKPEAADIALLMQRNEALRVAFIDD 929 (1597)
Q Consensus 888 KF~y--vvs~Q~yg~~~~~~~~~a~~i~~Lm~~~p~LrVAYide 929 (1597)
||+- |+++-+..+.+.+.+.-.+.+..|.+..|+++| +.+|
T Consensus 1 k~~~~Pv~~~aiep~~~~d~~kL~~aL~kl~~eDpsl~v-~~~e 43 (79)
T d1n0ua4 1 KFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLT-YMSE 43 (79)
T ss_dssp CCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEE-EECT
T ss_pred CCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEE-EECC
T ss_conf 988897799999989887999999999999975995799-8748
No 7
>d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.13 E-value=2e+02 Score=1.23 Aligned_cols=110 Identities=16% Similarity=0.111 Sum_probs=0.0
Q ss_pred ECCCCCCCCCCCCCCCCCHH-HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCC-----
Q ss_conf 25999866889865732123-320243311014773021899851121589774207999965850233021166-----
Q 000382 962 KLPGNPKLGEGKPENQNHAV-IFTRGNAIQTIDMNQDNYFEEALKMRNLLEEFHADHGIRPPTILGVREHVFTGS----- 1035 (1597)
Q Consensus 962 kLpG~pilGeGKpeNQNhAi-iFtRGe~lQtIDmNQDnYlEE~lKmRnlL~Ef~~~~~~~~~~IlG~RE~IFt~~----- 1035 (1597)
++|-+.+++|+++|--||++ -=.-|-++-.|..+-..-.--+|+ |.|.--+-..- .|.++|+---|=.++
T Consensus 32 ~~~~~~~~ie~~fer~~~~l~le~d~v~LaVi~seGns~v~rnL~--n~l~Am~v~~~--~v~~iGvA~DvDe~~ev~~~ 107 (241)
T d2p62a1 32 KLTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLK--SVLDSVKLGLL--NVEEVYVVRDVDEGNDVFEW 107 (241)
T ss_dssp SCCCCCCHHHHCCCTTCCCEEEEETTEEEEEECSCCTTTHHHHHH--HHHHHHHHTCC--CEEEEEEEEESSSSSCHHHH
T ss_pred CCCCCCCHHHHHCCCCCCCCEEECCCEEEEEEECCCCCHHHHHHH--HHHHHHHHHCC--CHHEEEEEEECCCCHHHHHH
T ss_conf 489766114432355663313433885899984788413778999--99999997444--61116888743760788999
Q ss_pred -CHHHHCCCCCCHHHHHHHHHHHHCCCCCCE-EECCCCCCCCC
Q ss_conf -111101111102567777777412766200-00269954321
Q 000382 1036 -VSSLAYFMSNQETSFVTLGQRVLANPLKCR-MHYGHPDVFDR 1076 (1597)
Q Consensus 1036 -v~~La~f~a~qE~sF~Tl~qR~la~Pl~vr-~HYGHPDvfd~ 1076 (1597)
.|.|..+....+..|-... -+-..|+++- .+.++|++.-+
T Consensus 108 ~~s~l~~~e~~~~~g~~~~~-~~~i~pl~Ig~~~~~~p~~~~K 149 (241)
T d2p62a1 108 VLSFLREREVRVDNGAIVTE-GVKIYPYGMGNLTLNEPFVKEK 149 (241)
T ss_dssp HHTTCTTCCCEEETTEEEET-TEEEEEEEECCSCCCCTTBCCC
T ss_pred HHHHHHCCCCCCCCCEEEEC-CEEEEEEEECCCCCCCCHHHHC
T ss_conf 99986236754467728974-6699997633646686146542
No 8
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.96 E-value=2.2e+02 Score=0.90 Aligned_cols=8 Identities=25% Similarity=0.517 Sum_probs=0.0
Q ss_pred CCCEEEEC
Q ss_conf 13704311
Q 000382 1280 HGGARYQA 1287 (1597)
Q Consensus 1280 ~GgAkY~a 1287 (1597)
.||+||++
T Consensus 11 ~gG~k~is 18 (29)
T d1x68a1 11 LTGAKFIC 18 (29)
T ss_dssp TTTCCEEE
T ss_pred CCCCEEEE
T ss_conf 57715887
No 9
>d2qalf1 d.58.14.1 (F:1-100) Ribosomal protein S6 {Escherichia coli [TaxId: 562]}
Probab=1.85 E-value=1e+02 Score=3.44 Aligned_cols=42 Identities=19% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 777412766200002699543210212468633221001230322
Q 000382 1054 GQRVLANPLKCRMHYGHPDVFDRVFHITRGGISKASRVINISEDI 1098 (1597)
Q Consensus 1054 ~qR~la~Pl~vr~HYGHPDvfd~~f~~trGGvSKAsk~l~lsEDI 1098 (1597)
|.|-||+|++ +...||==+++ |-.....++.=.+.++++|||
T Consensus 43 G~r~LAY~I~-k~~~G~Y~~~~--f~~~~~~i~el~~~l~~~~~V 84 (100)
T d2qalf1 43 GRRQLAYPIN-KLHKAHYVLMN--VEAPQEVIDELETTFRFNDAV 84 (100)
T ss_dssp BSCBCSSCTT-SCSBCBBCCCC--EECCHHHHHHHHHHTTSCTTE
T ss_pred EEEECCCCCC-CCCEEEEEEEE--EECCHHHHHHHHHHHCCCCCE
T ss_conf 0030244246-67735999999--952888899999986376572
No 10
>d1jaea1 b.71.1.1 (A:379-471) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}
Probab=1.85 E-value=2.1e+02 Score=1.08 Aligned_cols=13 Identities=31% Similarity=0.797 Sum_probs=0.0
Q ss_pred CCCCCHHHHCCCC
Q ss_conf 5732123320243
Q 000382 975 ENQNHAVIFTRGN 987 (1597)
Q Consensus 975 eNQNhAiiFtRGe 987 (1597)
||-|+.|.|.||.
T Consensus 9 dng~nqIAF~RG~ 21 (93)
T d1jaea1 9 SNDDNQIAFSRGS 21 (93)
T ss_dssp ECSSSEEEEEETT
T ss_pred ECCCCEEEEECCC
T ss_conf 8999579991599
Done!