Your job contains 1 sequence.
>000384
MHSPLNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRR
NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE
VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHA
TGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI
EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMD
DKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYF
LEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIF
VERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFA
TDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSERSVTDTALSR
DPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA
EEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPS
ENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIY
SGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGL
FGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCAS
VVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLA
IHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHN
PHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQR
LESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSC
HLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRP
VPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL
IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEA
ITHASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLL
ESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTL
KGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLG
DDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSL
FQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDP
RADKKSSFDSAALIMLHELERQGKIIISSS
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000384
(1590 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2149259 - symbol:DCL4 "dicer-like 4" species:3... 1021 7.5e-162 4
UNIPROTKB|Q8LMR2 - symbol:DCL1 "Endoribonuclease Dicer ho... 551 4.3e-151 7
UNIPROTKB|A7LFZ6 - symbol:DCL4 "Endoribonuclease Dicer ho... 570 1.6e-150 5
TAIR|locus:2097705 - symbol:DCL2 "dicer-like 2" species:3... 972 1.9e-138 3
ZFIN|ZDB-GENE-030131-3445 - symbol:dicer1 "Dicer1, Dcr-1 ... 374 4.7e-96 8
UNIPROTKB|F1NJX0 - symbol:DICER1 "Endoribonuclease Dicer"... 371 4.9e-94 8
UNIPROTKB|Q25BN1 - symbol:DICER1 "Endoribonuclease Dicer"... 371 4.9e-94 8
UNIPROTKB|Q9UPY3 - symbol:DICER1 "Endoribonuclease Dicer"... 360 1.9e-93 8
MGI|MGI:2177178 - symbol:Dicer1 "dicer 1, ribonuclease ty... 357 4.1e-93 9
UNIPROTKB|E2RIN4 - symbol:DICER1 "Uncharacterized protein... 362 4.8e-93 8
UNIPROTKB|A0MQH0 - symbol:DICER1 "Endoribonuclease Dicer"... 361 7.6e-93 8
UNIPROTKB|F1NP11 - symbol:DICER1 "Endoribonuclease Dicer"... 371 1.1e-92 8
UNIPROTKB|E9PU15 - symbol:Dicer1 "Protein Dicer1" species... 351 5.8e-92 8
UNIPROTKB|B3DLA6 - symbol:dicer1 "Endoribonuclease Dicer"... 344 1.0e-90 9
UNIPROTKB|F1MCQ5 - symbol:DICER1 "Endoribonuclease Dicer"... 361 1.5e-85 7
UNIPROTKB|Q6TUI4 - symbol:DICER1 "Endoribonuclease Dicer"... 360 1.3e-84 7
UNIPROTKB|I3L6Y9 - symbol:DICER1 "Uncharacterized protein... 362 3.9e-82 6
WB|WBGene00000939 - symbol:dcr-1 species:6239 "Caenorhabd... 480 1.5e-73 6
FB|FBgn0034246 - symbol:Dcr-2 "Dicer-2" species:7227 "Dro... 543 6.7e-66 6
FB|FBgn0039016 - symbol:Dcr-1 "Dicer-1" species:7227 "Dro... 191 6.5e-60 8
POMBASE|SPCC188.13c - symbol:dcr1 "dicer" species:4896 "S... 295 1.6e-58 4
ASPGD|ASPL0000041548 - symbol:dclB species:162425 "Emeric... 260 2.8e-57 5
UNIPROTKB|A4RHU9 - symbol:DCL2 "Dicer-like protein 2" spe... 313 1.5e-54 5
DICTYBASE|DDB_G0289659 - symbol:rrpA "RNA-directed RNA po... 405 7.0e-31 2
DICTYBASE|DDB_G0291249 - symbol:rrpB "RNA-directed RNA po... 401 2.4e-30 2
MGI|MGI:2442858 - symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) bo... 242 5.6e-27 2
UNIPROTKB|D4A8D9 - symbol:Ddx58 "Protein Ddx58" species:1... 339 7.0e-27 1
RGD|1309460 - symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box po... 339 1.3e-26 1
DICTYBASE|DDB_G0294407 - symbol:helF "DEAD/DEAH box helic... 330 1.0e-25 1
UNIPROTKB|I3LGW3 - symbol:DDX58 "Probable ATP-dependent R... 244 1.3e-25 4
ZFIN|ZDB-GENE-120612-3 - symbol:dhx58 "DEXH (Asp-Glu-X-Hi... 319 9.5e-25 1
UNIPROTKB|Q9GLV6 - symbol:DDX58 "Probable ATP-dependent R... 239 1.6e-24 4
UNIPROTKB|B3KRG4 - symbol:DICER1 "Endoribonuclease Dicer"... 211 7.9e-24 5
UNIPROTKB|E2RMV6 - symbol:DDX58 "Uncharacterized protein"... 236 8.1e-24 2
UNIPROTKB|F1MKU1 - symbol:DDX58 "Uncharacterized protein"... 233 1.8e-23 2
UNIPROTKB|E1BJZ0 - symbol:IFIH1 "Uncharacterized protein"... 193 1.9e-22 2
ZFIN|ZDB-GENE-081104-438 - symbol:ifih1 "interferon induc... 178 8.4e-21 3
DICTYBASE|DDB_G0280963 - symbol:rrpC "RNA-directed RNA po... 224 1.3e-20 4
UNIPROTKB|I3LJY5 - symbol:LOC100737466 "Uncharacterized p... 243 4.8e-19 1
UNIPROTKB|Q96C10 - symbol:DHX58 "Probable ATP-dependent R... 265 6.9e-19 1
RGD|1310093 - symbol:Dhx58 "DEXH (Asp-Glu-X-His) box poly... 264 8.9e-19 1
UNIPROTKB|D4AC08 - symbol:Ifih1 "Protein Ifih1" species:1... 171 1.4e-18 2
RGD|1560496 - symbol:Ifih1 "interferon induced with helic... 171 1.6e-18 2
WB|WBGene00008400 - symbol:drh-3 species:6239 "Caenorhabd... 180 3.9e-18 2
UNIPROTKB|K7GMB7 - symbol:DHX58 "Uncharacterized protein"... 159 5.2e-18 2
MGI|MGI:1918836 - symbol:Ifih1 "interferon induced with h... 173 5.2e-18 2
UNIPROTKB|E2RNK0 - symbol:IFIH1 "Uncharacterized protein"... 170 5.4e-18 2
UNIPROTKB|Q9BYX4 - symbol:IFIH1 "Interferon-induced helic... 164 5.5e-18 2
MGI|MGI:1931560 - symbol:Dhx58 "DEXH (Asp-Glu-X-His) box ... 256 6.5e-18 1
UNIPROTKB|F1S0P6 - symbol:DHX58 "Uncharacterized protein"... 159 8.0e-18 2
SGD|S000001441 - symbol:MPH1 "3'-5' DNA helicase involved... 193 1.8e-17 3
POMBASE|SPAC9.05 - symbol:fml1 "ATP-dependent 3' to 5' DN... 253 2.0e-17 1
WB|WBGene00001090 - symbol:drh-1 species:6239 "Caenorhabd... 183 2.3e-17 3
UNIPROTKB|Q5E9G8 - symbol:LGP2 "Putative uncharacterized ... 246 7.9e-17 1
UNIPROTKB|F1NDV4 - symbol:IFIH1 "Uncharacterized protein"... 171 8.3e-17 2
ASPGD|ASPL0000054215 - symbol:dclA species:162425 "Emeric... 231 8.8e-16 1
POMBASE|SPAC20H4.04 - symbol:fml2 "ATP-dependent 3' to 5'... 252 9.1e-16 2
TAIR|locus:2092409 - symbol:RTL2 "RNAse THREE-like protei... 139 9.2e-16 4
UNIPROTKB|D4ADT5 - symbol:Ddx58 "Protein Ddx58" species:1... 234 1.2e-15 1
UNIPROTKB|F5H5W6 - symbol:DDX58 "Probable ATP-dependent R... 231 2.7e-15 2
UNIPROTKB|E2QXT4 - symbol:DHX58 "Uncharacterized protein"... 161 4.0e-15 2
UNIPROTKB|A2A376 - symbol:DDX58 "Probable ATP-dependent R... 231 4.4e-15 2
UNIPROTKB|Q8IYD8 - symbol:FANCM "Fanconi anemia group M p... 184 6.7e-15 3
UNIPROTKB|B3KWW1 - symbol:DDX58 "cDNA FLJ44001 fis, clone... 231 7.5e-15 2
CGD|CAL0005976 - symbol:MPH1 species:5476 "Candida albica... 171 7.9e-15 2
UNIPROTKB|O95786 - symbol:DDX58 "Probable ATP-dependent R... 231 9.6e-15 2
UNIPROTKB|A4RN08 - symbol:MPH1 "ATP-dependent DNA helicas... 183 3.3e-14 3
UNIPROTKB|E2RNF7 - symbol:FANCM "Uncharacterized protein"... 176 5.7e-14 3
UNIPROTKB|J9P777 - symbol:FANCM "Uncharacterized protein"... 176 5.8e-14 3
UNIPROTKB|G3MWK8 - symbol:DHX58 "Uncharacterized protein"... 210 3.0e-13 1
TAIR|locus:504955425 - symbol:RTL1 "RNAse II-like 1" spec... 149 4.3e-13 2
SGD|S000003046 - symbol:DBP3 "RNA-Dependent ATPase, membe... 132 7.3e-13 2
UNIPROTKB|F1SI11 - symbol:FANCM "Uncharacterized protein"... 176 1.0e-12 4
FB|FBgn0038889 - symbol:CG7922 species:7227 "Drosophila m... 144 1.3e-12 3
MGI|MGI:2442306 - symbol:Fancm "Fanconi anemia, complemen... 164 2.5e-12 3
UNIPROTKB|B2RTQ9 - symbol:FANCM "FANCM protein" species:9... 152 1.3e-11 3
ASPGD|ASPL0000062874 - symbol:AN10063 species:162425 "Eme... 159 1.4e-11 3
UNIPROTKB|J9NY43 - symbol:FANCM "Uncharacterized protein"... 151 2.2e-11 3
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli... 126 1.0e-10 2
ZFIN|ZDB-GENE-090929-1 - symbol:fancm "Fanconi anemia, co... 213 1.2e-10 2
UNIPROTKB|I3LAY7 - symbol:FANCM "Uncharacterized protein"... 155 1.3e-10 4
TAIR|locus:2153333 - symbol:RTL3 "RNAse THREE-like protei... 169 1.3e-10 2
DICTYBASE|DDB_G0274841 - symbol:fncM "ATP-dependent DNA h... 208 4.0e-10 2
TIGR_CMR|GSU_0522 - symbol:GSU_0522 "ATP-dependent RNA he... 122 4.9e-10 2
CGD|CAL0005460 - symbol:DBP3 species:5476 "Candida albica... 120 1.1e-09 3
UNIPROTKB|F1NE03 - symbol:Gga.50035 "Uncharacterized prot... 126 4.8e-09 3
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 121 5.5e-09 2
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 121 5.5e-09 2
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 129 7.9e-09 2
UNIPROTKB|Q8EJQ5 - symbol:rhlB "ATP-dependent RNA helicas... 115 8.2e-09 3
TIGR_CMR|SO_0407 - symbol:SO_0407 "ATP-dependent RNA heli... 115 8.2e-09 3
UNIPROTKB|F6QFS2 - symbol:F6QFS2 "Uncharacterized protein... 167 8.6e-09 1
TAIR|locus:2076436 - symbol:AT3G58570 species:3702 "Arabi... 119 9.7e-09 2
ZFIN|ZDB-GENE-061013-64 - symbol:ddx28 "DEAD (Asp-Glu-Ala... 124 1.3e-08 2
UNIPROTKB|H0YJZ6 - symbol:DICER1 "Endoribonuclease Dicer"... 131 2.3e-08 3
DICTYBASE|DDB_G0274325 - symbol:ddx52 "DEAD/DEAH box heli... 117 3.5e-08 2
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi... 119 3.8e-08 2
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli... 115 4.6e-08 3
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli... 115 4.6e-08 3
RGD|1309381 - symbol:Dicer1 "dicer 1, ribonuclease type I... 113 5.6e-08 3
WARNING: Descriptions of 324 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2149259 [details] [associations]
symbol:DCL4 "dicer-like 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006396
"RNA processing" evidence=ISS;RCA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010050 "vegetative phase change"
evidence=RCA;IMP] [GO:0010267 "production of ta-siRNAs involved in
RNA interference" evidence=RCA;IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA;IMP] [GO:0051607
"defense response to virus" evidence=RCA;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IGI;RCA] [GO:0009616 "virus induced gene silencing"
evidence=IGI;RCA] [GO:0010599 "production of lsiRNA involved in RNA
interference" evidence=IMP] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IMP] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00035 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170
Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358
SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010599 GO:GO:0010267 GO:GO:0010050 EMBL:AF296825
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0010216 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ118423 IPI:IPI00521227
RefSeq:NP_197532.3 UniGene:At.31201 PDB:2KOU PDBsum:2KOU
ProteinModelPortal:P84634 SMR:P84634 MINT:MINT-6948367
STRING:P84634 PaxDb:P84634 PRIDE:P84634 EnsemblPlants:AT5G20320.1
GeneID:832154 KEGG:ath:AT5G20320 TAIR:At5g20320
HOGENOM:HOG000083706 InParanoid:P84634 OMA:RNLLHNR PhylomeDB:P84634
ProtClustDB:CLSN2702253 EvolutionaryTrace:P84634
Genevestigator:P84634 GO:GO:0006353 GO:GO:0009616 Uniprot:P84634
Length = 1702
Score = 1021 (364.5 bits), Expect = 7.5e-162, Sum P(4) = 7.5e-162
Identities = 292/949 (30%), Positives = 474/949 (49%)
Query: 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
I R YQ+++ + A N I L TG GKT IAVMLI ++ + S K + IFLAPTV
Sbjct: 123 IARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPK-KSVCIFLAPTVA 181
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
LV QQ VI +F+V + G K + + S+ W++EI N+VLVMTPQILL L+ F+
Sbjct: 182 LVEQQAKVIADSVNFKVAIHCGGKRIVKSHSE-WEREIAANEVLVMTPQILLHNLQHCFI 240
Query: 165 SLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKSDN--KPKVFGMTASPVVRKGVSSAM 220
++ + ++ DECHHA NHPY +IMK FY KS++ +P++FGMTASPVV KG +
Sbjct: 241 KMECISLLIFDECHHAQQQSNHPYAEIMKVFY-KSESLQRPRIFGMTASPVVGKGSFQSE 299
Query: 221 DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280
+ I+ LE+ L+++V+++E +++ FV S +Y + SD S +
Sbjct: 300 NLSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSAL---SDASQ----STIR 352
Query: 281 FDASLSKLQGSQLNCYKDMDDKHKT-----LRKQLSDYHAKILYCLDELGLICAYEAVKI 335
++ L ++ L K + D H+T +++ L H ++Y L LGL A +A KI
Sbjct: 353 YENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYTLLNLGLWGAIQAAKI 412
Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
L Q+E S C +L + S + D+ D + A+
Sbjct: 413 QLNSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVA-KDENASDL-LSLA-ALKEPLF 469
Query: 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
S KL +L+++ F + CIIFV RI+ A+ + + + L +L G ++ +
Sbjct: 470 SRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGL 529
Query: 456 DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
+++ + + +L+ F+ ++NLL AT V EEG+ + C VIR+DLP+TV+S+IQSRGRA
Sbjct: 530 KSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRA 589
Query: 516 RQHNSQFILMLERSERSVTDTA----LSRDP---EACFLKA---CTYVKTKSYIVESTGA 565
R S++ +++ D ++ D E + + C + + Y V TGA
Sbjct: 590 RMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRSSEETCPRLDEELYKVHETGA 649
Query: 566 SVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE--AYECELTLPSNAPFQTIVGPT 623
++ SS++L+++YC LP D+++ PKP F++K +E C +TLP+NAP I
Sbjct: 650 CISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRITLPANAPISEIESSL 709
Query: 624 SRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNE--SLPGAGTTKRK 681
+ +K+ CL+A +LH +G LND LLP ++ E+ L + + ++ G G ++
Sbjct: 710 LPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDELSDDEFDFDNIKGEGCSRGD 769
Query: 682 ELHGTTPIRALSGRWGEKCGVI-LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFEL 740
P+ +W + LH+Y F IY F ++S L + ++
Sbjct: 770 LYEMRVPV-LFKQKWDPSTSCVNLHSYYIMFVPHPADRIYKKFGFFMKSPLPVEAETMDI 828
Query: 741 ELYLXXXXXXXXXXX-XGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFF-L 798
+L+L G D D++ A+ FQE+ LF + +F L
Sbjct: 829 DLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLF------ERGELIPDFVPL 882
Query: 799 KRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNN 858
+ + +S S S YLLLPL + + G+ ++W I C S F K S L
Sbjct: 883 ELQDSSRTSKSTFYLLLPLCLHD--GESVISVDWVTIRNCLSSPIF-KTPSVLVE----- 934
Query: 859 NGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSA 918
+ P P +G H K LANG + ++K+ +V ++ + Y + +I + +
Sbjct: 935 ---DIFP----P--SGSHLK----LANGCWNIDDVKNSLVFTTYSKQFYFVADICHGRNG 981
Query: 919 ESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVN 967
SP + +K+ V + YG+ L HP QPLLR+K + NLL N
Sbjct: 982 FSPVK---ESSTKSHVESIYKLYGVELKHPAQPLLRVKPLCHVRNLLHN 1027
Score = 530 (191.6 bits), Expect = 7.5e-162, Sum P(4) = 7.5e-162
Identities = 151/440 (34%), Positives = 230/440 (52%)
Query: 881 IHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEK 940
+ LANG + ++K+ +V ++ + Y + +I + + SP + +K+ V +
Sbjct: 944 LKLANGCWNIDDVKNSLVFTTYSKQFYFVADICHGRNGFSPVK---ESSTKSHVESIYKL 1000
Query: 941 YGIVLIHPGQPLLRLKQSHNPHNLLVNFNDXXXXXXXXXXXMNTKKPQMHVHMPPELL-V 999
YG+ L HP QPLLR+K + NLL N + + + +PPEL +
Sbjct: 1001 YGVELKHPAQPLLRVKPLCHVRNLLHN--------RMQTNLEPQELDEYFIEIPPELSHL 1052
Query: 1000 RVD-VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNF-HIPSSLILEALTTLGC 1057
++ + + SL LLPS+M R+E+L++A +L+ ++ + +LEALTT C
Sbjct: 1053 KIKGLSKDIGSSLSLLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLEALTTEKC 1112
Query: 1058 CESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQ 1117
E S+ERLE+LGD+ LK+AVS HLFL + EG+L+ RRS V NS L +L + LQ
Sbjct: 1113 HERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQ 1172
Query: 1118 GYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVV---VGK-PCDM 1173
YIRD A DP ++ A G PC D + + +D ++ G+ C
Sbjct: 1173 VYIRDQALDPTQFFAFGH------PCRVTCDEV-ASKEVHSLNRDLGILESNTGEIRCSK 1225
Query: 1174 GHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDD-CITRASLRS 1232
GH W+ KTIAD EAL+GA+ V G A+ +KW+G++ D E V D CI AS R
Sbjct: 1226 GHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQDACI--AS-RR 1282
Query: 1233 YVPRI--NEIKDIESKIGYEFTVKFLLQEAITHASVQEFY--CYQNLYKHLQHCSTLLLS 1288
Y+P N ++ +E+++ Y+F K LL +A H S CYQ L + L +L
Sbjct: 1283 YLPLTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRL-EFLG--DAVLDY 1339
Query: 1289 QITEYVKS-FPK--PGETTD 1305
+T Y + FPK PG+ TD
Sbjct: 1340 LMTSYFFTVFPKLKPGQLTD 1359
Score = 114 (45.2 bits), Expect = 7.5e-162, Sum P(4) = 7.5e-162
Identities = 36/153 (23%), Positives = 60/153 (39%)
Query: 1277 KHLQHCSTLLLSQITEYVKSF--PKPGETTDS-GPSMKAPKALGDLLESIVGAVLIDTKL 1333
K C ++ L ++ E +F P + S GP + PK LGDL+ES +GA+ +D
Sbjct: 1380 KRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGP--RCPKVLGDLVESCLGALFLDCGF 1437
Query: 1334 NLDEVWRIFKPILSPIVTPDKXXXXXXXXXXXXCDSLGYFVKENCTLKGEMVHAELRLQL 1393
NL+ VW + L P+ C S + + + T K EL++
Sbjct: 1438 NLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYKWDREISATKKDGAFTVELKVTK 1497
Query: 1394 KDVLLVGEGQERSRXXXXXXXXSQLLKKLEVCE 1426
L R++ ++ L+ E
Sbjct: 1498 NGCCLTVSATGRNKREGTKKAAQLMITNLKAHE 1530
Score = 100 (40.3 bits), Expect = 1.1e-116, Sum P(4) = 1.1e-116
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1120
+RLE LGD+VL Y ++ + F +PK GQL+ RS +V N L + L+ ++
Sbjct: 1327 QRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFL 1383
Score = 80 (33.2 bits), Expect = 7.5e-162, Sum P(4) = 7.5e-162
Identities = 32/101 (31%), Positives = 46/101 (45%)
Query: 1491 MKKGGP--RTS---LFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTG-FSSFVSKI 1544
+K GGP +T+ L + C W P FE CE E+ G SFV K+
Sbjct: 1612 IKAGGPSSKTAKSLLHETCVANCWKPPHFEC-----------CE--EEGPGHLKSFVYKV 1658
Query: 1545 TLHIPEFGNV--ECNGDPRADKKSSFDSAALIMLHELERQG 1583
L + + N+ EC G+ RA KK + + AA + L+ G
Sbjct: 1659 ILEVEDAPNMTLECYGEARATKKGAAEHAAQAAIWCLKHSG 1699
Score = 50 (22.7 bits), Expect = 1.1e-103, Sum P(3) = 1.1e-103
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 1314 KALGDLLESIVGAVLIDT 1331
K + D++E++VGA L+D+
Sbjct: 1233 KTIADVVEALVGAFLVDS 1250
Score = 46 (21.3 bits), Expect = 1.2e-08, Sum P(6) = 1.2e-08
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 652 LLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKC 700
LLPS+ EN L++ + + + A + E+ G + AL+ EKC
Sbjct: 1067 LLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLEALTT---EKC 1112
Score = 41 (19.5 bits), Expect = 1.7e-54, Sum P(4) = 1.7e-54
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSD 312
++ ++++S + L K Q NC ++ + K+K +KQ D
Sbjct: 1 MRDEVDLSLTIPSKLLGKRDREQKNCEEEKN-KNKKAKKQQKD 42
Score = 39 (18.8 bits), Expect = 1.2e-08, Sum P(6) = 1.2e-08
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 431 ERFVKKVPFLTHLTVAYLTGSTTSVDALTPKV 462
E F++ P L+HL + L+ S +L P +
Sbjct: 1040 EYFIEIPPELSHLKIKGLSKDIGSSLSLLPSI 1071
>UNIPROTKB|Q8LMR2 [details] [associations]
symbol:DCL1 "Endoribonuclease Dicer homolog 1"
species:39947 "Oryza sativa Japonica Group" [GO:0007275
"multicellular organismal development" evidence=IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
Pfam:PF00035 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 Gene3D:3.30.160.20
EMBL:DP000009 EMBL:AP008209 GO:GO:0003725 GO:GO:0090305
GO:GO:0004386 SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000140 EMBL:AC105363 RefSeq:NP_001048796.2
UniGene:Os.13488 HSSP:P66666 ProteinModelPortal:Q8LMR2 PRIDE:Q8LMR2
EnsemblPlants:LOC_Os03g02970.1 GeneID:4331440
KEGG:dosa:Os03t0121800-00 KEGG:dosa:Os03t0121901-00
KEGG:osa:4331440 Gramene:Q8LMR2 eggNOG:COG1111 HOGENOM:HOG000239675
KO:K11592 OMA:ITHASRP GO:GO:0004525 GO:GO:0035196
Gene3D:1.10.1520.10 SUPFAM:SSF69065 Uniprot:Q8LMR2
Length = 1883
Score = 551 (199.0 bits), Expect = 4.3e-151, Sum P(7) = 4.3e-151
Identities = 151/417 (36%), Positives = 222/417 (53%)
Query: 881 IHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPF---DGNTDD-DSKTFVNY 936
+ +A+ +AK+L MVV A H+G+ + + I N +AE+ F +G + ++ +Y
Sbjct: 1173 LFMADSCWNAKDLAGMVVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLEYSSYADY 1232
Query: 937 FSEKYGIVLIHPGQPLLRLKQSHNPHNLLV-NFNDXXXXXXXXXXXMNTKKPQMHVHMPP 995
+ +KYG+ LI+ QPL+R + NLL F N K +V++PP
Sbjct: 1233 YKQKYGVELIYRKQPLIRARGVSYCKNLLSPRFEHSDAREGDFSE--NLDKTY-YVYLPP 1289
Query: 996 ELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTL 1055
EL + +P S+V+ LPS+M+R+ES++LA QL++ I+ + +P++ ILEALT
Sbjct: 1290 ELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKDIID-----YPVPATKILEALTAA 1344
Query: 1056 GCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRK 1115
C E+ ER ELLGD+ LK+ VS LFL YP+KHEGQL+ R V N L++ ++
Sbjct: 1345 SCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKT 1404
Query: 1116 LQGYIRDSAFDPRRWVAPGQLSL--------RP-------VPCECGVDTLEVPLDGKFFT 1160
LQ YI+ F P RW APG L + P CE ++ + D
Sbjct: 1405 LQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDEESTGCELQKESYDDYADN--MQ 1462
Query: 1161 QDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSL 1220
+D ++ C +R + SKT+AD EALIG YYV GG IAA ++MKW+GI A+L+
Sbjct: 1463 EDGEIEGDSSC---YRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAELDPEE 1519
Query: 1221 VDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQNL 1275
+ S + IN ++ +G EF K LL EAITHAS CYQ L
Sbjct: 1520 IPPPKPYDIPESIMRSIN-FDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRL 1575
Score = 301 (111.0 bits), Expect = 4.3e-151, Sum P(7) = 4.3e-151
Identities = 92/295 (31%), Positives = 137/295 (46%)
Query: 503 KTVSSYIQSRGRARQHNSQFILMLERSERSVTDTALSRDPEACF--LKACTYVKTKS--- 557
K S YI R + F+ SE ++ A+ R + + V T
Sbjct: 743 KPGSDYILMLERGNISHETFLRNARNSEETLRKEAMERTDLSHLDGTSVLSPVDTSPGSM 802
Query: 558 YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIF---KYKS--AEEAYECELTLPS 612
Y VESTGA V+ +S+V LIH YC LPSD+Y P F KY+ Y C+L LP
Sbjct: 803 YQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPC 862
Query: 613 NAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESL 672
NAPF+ + GP + L++Q VCL AC+KLH++GA D LLP E + +E
Sbjct: 863 NAPFEKLEGPICSSIRLAQQAVCLAACKKLHEMGAFTDTLLPD-RGSGEGEKTEQNDEGE 921
Query: 673 PGAGTTKRKELH--GTTPI-RA---LSGRWGEKCGVILHAYKFNFAC--------SIVTE 718
P GT + +E + G I R LSGR G + + Y ++ C VT+
Sbjct: 922 PLPGTARHREFYPEGVADILRGEWILSGRDGYQNSQFIKLYMYSVNCVNVGTSKDPFVTQ 981
Query: 719 IYSGFVLLIESELDNDVGNFELELYLXXXXXXXXXXXX-GQVHLDADQMSKAKCF 772
+ S F ++ +ELD +V + ++L++ G++ + Q+ K F
Sbjct: 982 L-SNFAIIFGNELDAEVLSTTMDLFVARTMITKASLVFRGRIEITESQLVLLKSF 1035
Score = 296 (109.3 bits), Expect = 4.3e-151, Sum P(7) = 4.3e-151
Identities = 60/119 (50%), Positives = 80/119 (67%)
Query: 147 VLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVF 204
VLVMT QILL+ LR + + +D + +++DECHHA HPY+ +M EFYH + + +P VF
Sbjct: 330 VLVMTAQILLNILRHSIIKMDAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPAVF 389
Query: 205 GMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQS 263
GMTASPV KGV+S DC +I LES LDS V TI+D+ E+E VP E YD++
Sbjct: 390 GMTASPVNLKGVTSQEDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPLEVVVQYDKA 448
Score = 268 (99.4 bits), Expect = 4.3e-151, Sum P(7) = 4.3e-151
Identities = 58/144 (40%), Positives = 89/144 (61%)
Query: 389 AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYL 448
AV G ++ ++ L+++ L + + IIFVER++ A V+ + + ++P L+ + A L
Sbjct: 616 AVADGKVTPRVQALIKILLKYQHTEDFRAIIFVERVVTALVLPKVLAELPSLSFIRCASL 675
Query: 449 TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
G + + ++Q + + FR G+V LL AT V EEG+ + C+ VIRFDL KTV +Y
Sbjct: 676 IGHNNNQEMRACQMQ-DTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAY 734
Query: 509 IQSRGRARQHNSQFILMLERSERS 532
IQSRGRAR+ S +ILMLER S
Sbjct: 735 IQSRGRARKPGSDYILMLERGNIS 758
Score = 182 (69.1 bits), Expect = 4.3e-151, Sum P(7) = 4.3e-151
Identities = 51/191 (26%), Positives = 87/191 (45%)
Query: 1275 LYKHLQHCSTLLLSQITEYVKSFP----KPGETTDSGPSMKAPKALGDLLESIVGAVLID 1330
L+ HL+H S+ L +QI E+VK KPG + KAPK LGD++ESI GA+ +D
Sbjct: 1625 LHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLD 1684
Query: 1331 TKLNLDEVWRIFKPILSPIVTPDKXXXXXXXXXXXXCDSLGYFVKENCTLKGEMVHAELR 1390
+ + VW++F+P+L P+VTP+ C ++ + G + E+
Sbjct: 1685 SGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRAGNIATVEVF 1744
Query: 1391 LQLKDVLLVGEGQERSRXXXXXXXXSQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKED 1450
+ D + +G Q + L L+ E K G+ + + T++
Sbjct: 1745 V---DGVQIGVAQNPQKKMAQKLAARNALVVLKEKETATKKEDERDGEKKNGAQMFTRQT 1801
Query: 1451 LPEPPSCKRQK 1461
L + C R++
Sbjct: 1802 LND--ICLRRQ 1810
Score = 167 (63.8 bits), Expect = 4.3e-151, Sum P(7) = 4.3e-151
Identities = 36/62 (58%), Positives = 43/62 (69%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL+V E AK RNTIA LETGAGKT+IAV+LIK + + K L +FL P V LV
Sbjct: 268 RQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLVPKVPLV 327
Query: 107 HQ 108
+Q
Sbjct: 328 YQ 329
Score = 157 (60.3 bits), Expect = 1.3e-136, Sum P(7) = 1.3e-136
Identities = 62/188 (32%), Positives = 90/188 (47%)
Query: 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESC 257
+ +P VFGMTASPV KGV+S DC +I LES LDS V TI+D+ E+E VP E
Sbjct: 383 EKRPAVFGMTASPVNLKGVTSQEDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPLEVV 442
Query: 258 RFYDQSKFCGS---DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLR------- 307
YD++ S +K ++E + + S SK Q +D + + LR
Sbjct: 443 VQYDKAATLWSLHEQIK-QMESTVEEAALSSSKRTKWQFMGARDAGSRDE-LRLVYGVSE 500
Query: 308 KQLSDYHAKIL-------YCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYF 360
+ SD A ++ Y L ELG CAY+ + L L+ E Q Y
Sbjct: 501 RTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLT-ALQNDERANYQVDVKFQESY- 558
Query: 361 LEEVLHVI 368
L++V+ ++
Sbjct: 559 LKKVVDLL 566
Score = 102 (41.0 bits), Expect = 1.3e-102, Sum P(7) = 1.3e-102
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 1047 LILEALTTLGCCES--FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1104
L++EA+T S +RLE +GD+VL + ++ HLF TY G+L+ R+ AV N
Sbjct: 1554 LLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNN 1613
Query: 1105 STLHKLGTDRKLQGYIR 1121
++ KL ++R
Sbjct: 1614 ENFARVAVKHKLHVHLR 1630
Score = 69 (29.3 bits), Expect = 4.3e-151, Sum P(7) = 4.3e-151
Identities = 24/86 (27%), Positives = 36/86 (41%)
Query: 1497 RTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFG-NVE 1555
R +L +C WPMP + EG FV + ++ + G E
Sbjct: 1799 RQTLNDICLRRQWPMPQYRCVN----------EGGPAHA--KRFVYSVRVNTSDRGWTDE 1846
Query: 1556 CNGDPRADKKSSFDSAALIMLHELER 1581
C G+P K + DSAA+++L L R
Sbjct: 1847 CIGEPMPSVKKAKDSAAVLLLELLNR 1872
Score = 42 (19.8 bits), Expect = 5.4e-27, Sum P(5) = 5.4e-27
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 985 KKPQMHVHMPPELLVRVDVPISVVKSLY-LLPSVMQRLESLMLASQLR 1031
K+ + HV MP E++V+ D + + SL+ + + +E L+S R
Sbjct: 429 KELEKHVPMPLEVVVQYD-KAATLWSLHEQIKQMESTVEEAALSSSKR 475
Score = 41 (19.5 bits), Expect = 2.2e-33, Sum P(4) = 2.2e-33
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 367 VIGSALP-LADKIFLDFGFDYS 387
V+G + +A IFLD G+D S
Sbjct: 1669 VLGDIVESIAGAIFLDSGYDTS 1690
Score = 40 (19.1 bits), Expect = 2.7e-33, Sum P(4) = 2.7e-33
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 1313 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPD 1353
P + G+ ++ ++GA + D K+ V + K +L T D
Sbjct: 602 PDSHGEHVDEVIGAAVADGKVT-PRVQALIKILLKYQHTED 641
Score = 39 (18.8 bits), Expect = 4.6e-82, Sum P(6) = 4.6e-82
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 1292 EYVKSFPKPGETTDSGPSMK--APKALGDLLESIVGAVLI 1329
+Y + + GE + + K L D++E+++G +
Sbjct: 1456 DYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYV 1495
Score = 37 (18.1 bits), Expect = 2.1e-52, Sum P(6) = 2.1e-52
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 498 RFDLPKTVSSYIQS-RGRARQHNSQFIL-MLERSERSVTDTALSRDPEACFLKACTY 552
++ L KT+ SYIQ+ R + + +L + + R + + C L+ +Y
Sbjct: 1398 QYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDEESTGCELQKESY 1454
>UNIPROTKB|A7LFZ6 [details] [associations]
symbol:DCL4 "Endoribonuclease Dicer homolog 4"
species:39947 "Oryza sativa Japonica Group" [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=IMP] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IDA] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IMP] [GO:0048608 "reproductive structure
development" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010492 GO:GO:0010267 EMBL:AL606607 EMBL:AP008210
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009944
GO:GO:0008026 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000083706
EMBL:EU009924 EMBL:AB353922 EMBL:AK066586 RefSeq:NP_001053278.1
UniGene:Os.27988 GeneID:4336362 KEGG:osa:4336362 Gramene:A7LFZ6
ProtClustDB:CLSN2694920 GO:GO:0048608 Uniprot:A7LFZ6
Length = 1657
Score = 570 (205.7 bits), Expect = 1.6e-150, Sum P(5) = 1.6e-150
Identities = 189/645 (29%), Positives = 299/645 (46%)
Query: 214 KGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273
KG S+ ++ I+ LE L ++V ++ D E+E V S FY S+L
Sbjct: 226 KGGSNKLNYTKCINSLEELLHAKVCSV-DNEELESVVASPDMEVYFYGPVNH--SNLT-- 280
Query: 274 LEVSWSKFDASLSKLQGSQL--NCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYE 331
+ + D SL KLQ ++ D D K L K L H I++CL ELG A +
Sbjct: 281 -TICIKELD-SL-KLQSERMLRASLCDFKDSQKKL-KSLWRLHENIIFCLQELGSFGALQ 336
Query: 332 AVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG-FDYSKAV 390
A + L + E+ S F L+ S L G FD K +
Sbjct: 337 AARTFLSFDGDKLDRREVDLNGSTSS--FAHHYLNGATSILSRNKTDGSHAGSFDLEK-L 393
Query: 391 DLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG 450
+ + S K L+ + +G + CI+FV+RI A+ + ++ + L +L G
Sbjct: 394 EEPFFSNKFSVLINVLSRYGLQENMKCIVFVKRITVARAISNILQNLKCLEFWKCEFLVG 453
Query: 451 STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510
+ ++ +++ F G+VNLL AT V EEG+ + C V+RFDLP+TV+S+IQ
Sbjct: 454 CHSGSKNMSRNKMDAIVQRFSSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQ 513
Query: 511 SRGRARQHNSQFILMLERSERS---------VTDTALSRDPEACFLKAC-TYVKTKSYIV 560
SRGRAR S+++++LER +S ++ ++ + ++ ++ Y V
Sbjct: 514 SRGRARMTKSKYVVLLERENQSHEKLLNGYIAGESIMNEEIDSRTSNDMFDCLEENIYQV 573
Query: 561 ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIV 620
++TGAS++T SV+L+H YC+ LP D ++TP P+F Y E C L LP NA F+
Sbjct: 574 DNTGASISTACSVSLLHCYCDNLPRDMFFTPSPVFFYIDGIEGIICRLILPPNAAFRQAD 633
Query: 621 GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGA--GTT 678
G +K+ +K+ CL+AC KLH++GAL D LLP S N +S N S +
Sbjct: 634 GQPCLSKDEAKRDACLKACVKLHKLGALTDFLLPG--PGSRKNKVSVTNNSSNNKVEDDS 691
Query: 679 KRKELHGTTPIRALSGRWGEKCGVI--LHAYKFNFACSIVTEIYSGFVLLIESELDNDVG 736
R+ELH I A+ G K + LH Y F Y F L + + L +
Sbjct: 692 LREELHEML-IPAVLKPSGLKLDSLSNLHFYYVKFIPIPEDRRYQMFGLFVINPLPVEAE 750
Query: 737 NFELELYLXXXXXXXXXXXX-GQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSRE 795
+++L+L G++ + ++M A FQE+ K+ + S
Sbjct: 751 TLQVDLHLARGRIVKAGIKHLGKIAFEKEKMMLAHKFQEMCL-----KILLDRSEFTSPH 805
Query: 796 FFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCAS 840
L + +L S YLLLP++ +GD + I+W + C S
Sbjct: 806 VKLGNDV-TLEINSTFYLLLPIK-QKCYGD-RFMIDWPAVERCLS 847
Score = 557 (201.1 bits), Expect = 1.6e-150, Sum P(5) = 1.6e-150
Identities = 160/455 (35%), Positives = 224/455 (49%)
Query: 863 SSPCRTSPCKTGCHGK----DVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSA 918
SSP P H + + L +G ++ VV + H + + I++ +A
Sbjct: 847 SSPIFKDPIDVSVHASYSSNESLRLLDGIFSKTDVVGSVVFSPHNNIFFFVDGILDEINA 906
Query: 919 ESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDXXXXXXXX 978
S G T+ +F E++ I L HP QPLL+ KQ N NLL N
Sbjct: 907 WSEHSG------ATYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHN------RLPET 954
Query: 979 XXXMNTKKPQMHVHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE-IN 1035
+ + V +PPEL L + + SL LLPS+M RLE+L++A +L++ ++
Sbjct: 955 TESEGRELLEHFVELPPELCSLKVIGFSKDMGSSLSLLPSLMYRLENLLVAIELKDVMLS 1014
Query: 1036 CHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLS 1095
I +S ILEALTT C E S+ER E+LGD+ LKY V H F+TY EGQL+
Sbjct: 1015 SFPEASQISASGILEALTTEKCLERISLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLT 1074
Query: 1096 ARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLD 1155
RRS V NS L++L +KLQ YIRD F+P ++ APG RP C D +EV L
Sbjct: 1075 RRRSDVVNNSHLYELSIRKKLQVYIRDQQFEPTQFFAPG----RPCKVVCNTD-VEVRLH 1129
Query: 1156 GKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1215
D + C H W+ K IAD E+LIGA+ V GG AA + W+GID D
Sbjct: 1130 QMDIHPDNRENCNLRCTRSHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDVD 1189
Query: 1216 LEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY--CYQ 1273
+ + +S+ + +I +E IGY+F K LL +A H S + CYQ
Sbjct: 1190 FNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQ 1249
Query: 1274 NLYKHLQHCSTLLLSQITEYVKS-FP--KPGETTD 1305
L + L +L IT Y+ S +P KPG+ TD
Sbjct: 1250 RL-EFLG--DAVLEYVITSYLYSTYPDIKPGQITD 1281
Score = 398 (145.2 bits), Expect = 1.6e-150, Sum P(5) = 1.6e-150
Identities = 89/202 (44%), Positives = 125/202 (61%)
Query: 22 DMGSSGHDHAVDGPSSSTNSIN---FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVM 78
D ++ A GPSS+ I R YQL + + A N I L TG GKT IAV+
Sbjct: 3 DAAAAAPAAAAAGPSSTRGEPKDPRTIARKYQLDLCKRAVEENIIVYLGTGCGKTHIAVL 62
Query: 79 LIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138
LI ++ I+ +++ IFLAPT+ LV QQ VI TDF+V+ YYG G + D Q W
Sbjct: 63 LIYELGHLIRKPS-REVCIFLAPTIPLVRQQAVVIASSTDFKVQCYYG-NGKNSRDHQEW 120
Query: 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN--HPYTKIMKEFYHK 196
+ ++ + +VLVMTPQILL +LR F+ ++ + +++DECHHA HPY +IMKEFY+
Sbjct: 121 ENDMREFEVLVMTPQILLQSLRHCFIKMNSIALLILDECHHAQPQKRHPYAQIMKEFYNS 180
Query: 197 S--DNKPKVFGMTASPVVRKGV 216
+ + P+VFGMTASP++ KGV
Sbjct: 181 NSVEKFPRVFGMTASPIIGKGV 202
Score = 149 (57.5 bits), Expect = 1.6e-150, Sum P(5) = 1.6e-150
Identities = 40/166 (24%), Positives = 80/166 (48%)
Query: 1259 EAITHASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGD 1318
+++ +A+V++ +++L K H T +S+ YVK + + P+ PKALGD
Sbjct: 1290 DSLAYAAVEKSI-HKHLIKDSNHL-TSAISKFEMYVKLSNSEKDLLEE-PA--CPKALGD 1344
Query: 1319 LLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKXXXXXXXXXXXXCDSLGYFVKENC 1378
++ES +GAVL+D+ NL+ VW++ +L P++T C G+ +
Sbjct: 1345 IVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPK 1404
Query: 1379 TLKGE-MVHAELRLQLKDVLLVGEGQERSRXXXXXXXXSQLLKKLE 1423
+K + H ++ + +K +++ R+ + L KL+
Sbjct: 1405 PMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLK 1450
Score = 113 (44.8 bits), Expect = 4.4e-104, Sum P(5) = 4.4e-104
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGY-IRD 1122
+RLE LGD+VL+Y ++ +L+ TYP GQ++ RS AV N +L ++ + + I+D
Sbjct: 1249 QRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKD 1308
Query: 1123 S 1123
S
Sbjct: 1309 S 1309
Score = 55 (24.4 bits), Expect = 1.6e-150, Sum P(5) = 1.6e-150
Identities = 23/91 (25%), Positives = 39/91 (42%)
Query: 1497 RTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGN--V 1554
R+ LF+LC W P F+ C+ E + F K+ + I +
Sbjct: 1571 RSFLFELCAANYWKPPEFK-----------LCKE-EGPSHLRKFTYKVVVEIKGASATLL 1618
Query: 1555 ECNGDPRADKKSSFDSAALIMLHELERQGKI 1585
EC+ D + KK++ + AA L L++ G +
Sbjct: 1619 ECHSDGKLQKKAAQEHAAQGALWCLKQLGHL 1649
Score = 47 (21.6 bits), Expect = 1.5e-85, Sum P(5) = 1.5e-85
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 1314 KALGDLLESIVGAVLID 1330
K + D++ES++GA L++
Sbjct: 1155 KVIADVVESLIGAFLVE 1171
Score = 47 (21.6 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
Identities = 18/74 (24%), Positives = 30/74 (40%)
Query: 264 KFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAK--ILYCL 321
K C + L K + + L C+ D L+K+ + HA L+CL
Sbjct: 1589 KLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSD-----GKLQKKAAQEHAAQGALWCL 1643
Query: 322 DELGLICAYEAVKI 335
+LG + E V++
Sbjct: 1644 KQLGHLPKEEDVRV 1657
Score = 37 (18.1 bits), Expect = 8.6e-139, Sum P(5) = 8.6e-139
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 1447 TKEDLPEPPSCKRQKG--TEAAIPAG--DS-CKKAYCMTVGTPVVAPI----NMKKGGPR 1497
+++DL E P+C + G E+ I A DS Y V ++ P+ NM P
Sbjct: 1328 SEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTN-PM 1386
Query: 1498 TSLFQLCK 1505
L +LC+
Sbjct: 1387 RELRELCQ 1394
Score = 37 (18.1 bits), Expect = 5.3e-85, Sum P(3) = 5.3e-85
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 1515 ETTESKSRTLL 1525
ETTES+ R LL
Sbjct: 953 ETTESEGRELL 963
Score = 37 (18.1 bits), Expect = 1.5e-30, Sum P(3) = 1.5e-30
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 549 ACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEML 583
AC K IVES +V DS NL + + ML
Sbjct: 1337 ACP--KALGDIVESCIGAVLLDSGFNLNYVWKVML 1369
>TAIR|locus:2097705 [details] [associations]
symbol:DCL2 "dicer-like 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010216 "maintenance of DNA methylation"
evidence=IMP] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA;IMP] [GO:0051607 "defense response to
virus" evidence=RCA;IMP] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=IGI;RCA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA] [GO:0010073
"meristem maintenance" evidence=RCA] [GO:0016569 "covalent
chromatin modification" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0051607 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0010267 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC012328 GO:GO:0010216 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ479970
EMBL:DQ479971 IPI:IPI00530074 IPI:IPI00852241 RefSeq:NP_001078101.1
RefSeq:NP_001189798.1 RefSeq:NP_566199.4 UniGene:At.43488
ProteinModelPortal:Q3EBC8 SMR:Q3EBC8 IntAct:Q3EBC8 STRING:Q3EBC8
PaxDb:Q3EBC8 PRIDE:Q3EBC8 EnsemblPlants:AT3G03300.1
EnsemblPlants:AT3G03300.3 GeneID:821300 KEGG:ath:AT3G03300
TAIR:At3g03300 HOGENOM:HOG000006099 InParanoid:Q3EBC8 OMA:TAIVLES
PhylomeDB:Q3EBC8 ProtClustDB:CLSN2694055 Genevestigator:Q3EBC8
Uniprot:Q3EBC8
Length = 1388
Score = 972 (347.2 bits), Expect = 1.9e-138, Sum P(3) = 1.9e-138
Identities = 263/773 (34%), Positives = 412/773 (53%)
Query: 38 STNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLII 97
S + ++F R YQ++ E A ++NTI LETG+GKT+IA+ML++ A + +
Sbjct: 17 SASPLHFA-RSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYLFRKPS-PCFCV 74
Query: 98 FLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
FL P V LV QQ + +++HTD +V Y+G GVD WDS W++E++K +VLVMTP ILLD
Sbjct: 75 FLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLD 134
Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVV 212
ALR +FLSL ++ +++DECHHA G HPY IM+EFYHK + N P++FGMTAS V
Sbjct: 135 ALRHSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVK 194
Query: 213 RKGVSSAMDCEGQ-ISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG---S 268
KG + +D + I ELE+ ++S+V+T E+++ + FVP + S ++Y K +
Sbjct: 195 TKGEN--LDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRA 252
Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
L KLE K SL L LN +D ++ K+L + + YCLD+LG++
Sbjct: 253 SLVEKLERLTIKHRLSLGTLD---LNS-STVD----SVEKRLLRISSTLTYCLDDLGILL 304
Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
A +A + + +Q + ++ + ++ +++ LA+ + G ++S
Sbjct: 305 AQKAA----QSLSASQNDSFLWGELNMFSVALVKKFCSDASQEF-LAE---IPQGLNWSV 356
Query: 389 A-----VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-PFLTH 442
A + G ++ K L++ L + + CIIFV+R+I A V+E + ++ P +
Sbjct: 357 ANINGNAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNN 416
Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
Y+ G+ + + T K Q E++E FR G VN++ AT ++EEG+ V +C+ VIRFD
Sbjct: 417 WKTKYVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPA 476
Query: 503 KTVSSYIQSRGRARQHNSQFILMLERSERSVTDTAL-------SRDPEACF---LKACTY 552
+ S+IQSRGRAR NS +++M+E + +T + L R E L C
Sbjct: 477 SNICSFIQSRGRARMQNSDYLMMVESGDL-LTQSRLMKYLSGGKRMREESLDHSLVPCPP 535
Query: 553 VKTKS----YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECEL 608
+ S + VESTGA+VT SSV+LI+ YC LPSD+Y+ P P F + + C L
Sbjct: 536 LPDDSDEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGS--CTL 593
Query: 609 TLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKK 668
LP + P + + + NK L KQ VCL+AC +LH+VGAL+DHL+P + +E +S+K
Sbjct: 594 YLPKSCPVKEVKAEAN-NKVL-KQAVCLKACIQLHKVGALSDHLVPDMVV-AET--VSQK 648
Query: 669 NESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFNFACSIVTEIYSGFVLL-I 727
E + E P +S ++ + H Y + + VLL
Sbjct: 649 LEKIQ-----YNTEQPCYFPPELVS-QFSAQPETTYHFYLIRMKPNSPRNFHLNDVLLGT 702
Query: 728 ESELDNDVGNFELELYLXXXXXXXXXXXXGQVHLDADQMSKAKCFQELFFNGL 780
L++D+GN L G HL +++ + FQ F L
Sbjct: 703 RVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVL 755
Score = 353 (129.3 bits), Expect = 1.9e-138, Sum P(3) = 1.9e-138
Identities = 90/269 (33%), Positives = 137/269 (50%)
Query: 871 CKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDS 930
C T + ++H +G +++ +V H G +Y ++NN + S D
Sbjct: 816 CSTNGASR-ILHTKDGLFCTCVVQNALVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGD- 873
Query: 931 KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDXXXXXXXXXXXMNTKKPQMH 990
+T++ Y+ E++GI L +PLL + H+ L + +
Sbjct: 874 QTYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYL----------HMAKKKKEKEHDREF 923
Query: 991 VHMPPELLVRVDVPISV--VKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLI 1048
V +PPEL + PISV + S +PSVMQR+ESL++A L++ I +IP+ +
Sbjct: 924 VELPPELCHVILSPISVDMIYSYTFIPSVMQRIESLLIAYNLKKSIP----KVNIPTIKV 979
Query: 1049 LEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1108
LEA+TT C + F +E LE LGDS LKYAV LF HEG LS ++ + N L
Sbjct: 980 LEAITTKKCEDQFHLESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLC 1039
Query: 1109 KLGTDRKLQGYIRDSAFDPRRWVAPGQLS 1137
+ G +KLQG+IRD F+P+ W+ PGQ S
Sbjct: 1040 QFGCQQKLQGFIRDECFEPKGWMVPGQSS 1068
Score = 142 (55.0 bits), Expect = 1.9e-138, Sum P(3) = 1.9e-138
Identities = 48/131 (36%), Positives = 68/131 (51%)
Query: 1181 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEI 1240
K++AD E+LIGAY GG +AAL M W+GI D + + R S +N +
Sbjct: 1095 KSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTTKIQ----RDSPIQAEKLVN-V 1149
Query: 1241 KDIESKIGYEFTVKFLLQEAITHAS--VQEF-YCYQNLYKHLQHCSTLLLSQITEYV-KS 1296
+ES + Y F K LL EA+TH S + E CYQ L + L ++L IT+++
Sbjct: 1150 GYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRL-EFLG--DSVLDYLITKHLYDK 1206
Query: 1297 FP--KPGETTD 1305
+P PG TD
Sbjct: 1207 YPCLSPGLLTD 1217
Score = 127 (49.8 bits), Expect = 7.1e-137, Sum P(3) = 7.1e-137
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 1274 NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSG--PSMKAPKALGDLLESIVGAVLIDT 1331
NL+KH+ + S L I+ V F + + G + PK LGD++ES+ GA+ +D+
Sbjct: 1236 NLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDS 1295
Query: 1332 KLNLDEVWRIFKPILSPIVTPD 1353
N + V+ KP+L ++TP+
Sbjct: 1296 GYNKEVVFASIKPLLGCMITPE 1317
Score = 89 (36.4 bits), Expect = 4.4e-109, Sum P(3) = 4.4e-109
Identities = 31/82 (37%), Positives = 42/82 (51%)
Query: 1046 SLILEALTTLGCCESFSM-------ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARR 1098
SL++EALT G S+ M +RLE LGDSVL Y ++ HL+ YP G L+ R
Sbjct: 1164 SLLVEALTH-G---SYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMR 1219
Query: 1099 SWAVCNSTLHKLGTDRKLQGYI 1120
S +V N + L +I
Sbjct: 1220 SASVNNECYALVAVKANLHKHI 1241
Score = 42 (19.8 bits), Expect = 6.3e-128, Sum P(3) = 6.3e-128
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 1314 KALGDLLESIVGAVL 1328
K++ D++ES++GA L
Sbjct: 1095 KSVADVVESLIGAYL 1109
>ZFIN|ZDB-GENE-030131-3445 [details] [associations]
symbol:dicer1 "Dicer1, Dcr-1 homolog (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=ISS;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0070883 "pre-miRNA binding" evidence=IDA] [GO:0021591
"ventricular system development" evidence=IGI;IMP] [GO:0035279
"mRNA cleavage involved in gene silencing by miRNA" evidence=IGI]
[GO:0035195 "gene silencing by miRNA" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720
ZFIN:ZDB-GENE-030131-3445 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0035279 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
GO:GO:0021591 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P66666 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
eggNOG:COG0571 GO:GO:0070883 CTD:23405 HOGENOM:HOG000001567
EMBL:AL772219 EMBL:AY386319 IPI:IPI00933004 RefSeq:NP_001154925.1
UniGene:Dr.78137 STRING:Q6TV19 Ensembl:ENSDART00000045881
Ensembl:ENSDART00000109826 GeneID:324724 KEGG:dre:324724
InParanoid:Q6TV19 OrthoDB:EOG4JDH5W NextBio:20808937
ArrayExpress:Q6TV19 Bgee:Q6TV19 Uniprot:Q6TV19
Length = 1865
Score = 374 (136.7 bits), Expect = 4.7e-96, Sum P(8) = 4.7e-96
Identities = 103/328 (31%), Positives = 163/328 (49%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
+ PR YQ+++ E A NTI L TG+GKT IAV+LIK+++ I+ K+ + FL
Sbjct: 32 YTPRKYQVELLEAALEHNTIVCLNTGSGKTFIAVLLIKELSHQIRGENGKRTV-FLVNAA 90
Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
V QQ +R H+D +V +Y ++ + W + W +E+ +N VLVMT I L L+
Sbjct: 91 SSVAQQASTVRTHSDLQVGDYM-SEDMTSWPEEMWNREMIENQVLVMTCHIFLHVLKNGV 149
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
L L + +V DECH A HPY +IMK + P++ G+TAS + G D E
Sbjct: 150 LPLSKINLLVFDECHLAITGHPYREIMK-ICEGCPSCPRILGLTAS--ILNGKCDPCDLE 206
Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDA 283
+I LE L S T D ++ + +E D ++ D G E ++ D
Sbjct: 207 EKIQNLEKILQSNAETATDLVVLDRYASQPREEV--LDCGQY--QDQSGLSERLLNELDE 262
Query: 284 SLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC---LEKV 340
+L+ L L+ +++ D ++ L+D A L LG CA +A I L+K
Sbjct: 263 ALNFLNDCNLSVHREDRDPTFISKQVLNDCRA----VLTVLGPWCADKAAGIMVRELQKY 318
Query: 341 LKAQEECEIYRQSSLQCKYFLEEVLHVI 368
+K ++E E+ R+ L L ++ H +
Sbjct: 319 IKHEQE-ELNRKFLLFTDTILRKI-HAL 344
Score = 229 (85.7 bits), Expect = 4.7e-96, Sum P(8) = 4.7e-96
Identities = 56/134 (41%), Positives = 79/134 (58%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV----- 462
T +LC IIFVER A V+ R +K+ P L +++ ++TG + + K
Sbjct: 425 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEF 484
Query: 463 --QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
Q+EVL FR + NLL AT ++EEG+ +P C+ V+RFDLP SY+QS+GRAR S
Sbjct: 485 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVS 544
Query: 521 QFILMLERSERSVT 534
+I ML SER+ T
Sbjct: 545 NYI-MLADSERTKT 557
Score = 205 (77.2 bits), Expect = 4.7e-96, Sum P(8) = 4.7e-96
Identities = 43/89 (48%), Positives = 58/89 (65%)
Query: 1047 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1106
LIL+ALT + F++ERLE+LGDS LK+A++ +LF TYP HEG+LS RS V N
Sbjct: 1278 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1337
Query: 1107 LHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1134
L++LG + L + S FDP W+ PG
Sbjct: 1338 LYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1366
Score = 194 (73.4 bits), Expect = 4.7e-96, Sum P(8) = 4.7e-96
Identities = 47/131 (35%), Positives = 74/131 (56%)
Query: 561 ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE---AYECELTLPSNAPFQ 617
E G VT ++++ ++RYC LPSD + P K K+ E Y L LP N+P +
Sbjct: 605 EDGGPRVTMNTAIGHVNRYCARLPSDPFTHLAP--KCKTVEMNTGGYRSTLFLPINSPLR 662
Query: 618 T-IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESL 672
+ GP L+++ V L CEKLH++G L+DHL+P +V+ E +L ++ S+
Sbjct: 663 VPVTGPVMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSV 722
Query: 673 PGA-GTTKRKE 682
PG G+TKR++
Sbjct: 723 PGRPGSTKRRQ 733
Score = 114 (45.2 bits), Expect = 4.7e-96, Sum P(8) = 4.7e-96
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350
E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++
Sbjct: 1737 EDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLI 1785
Score = 100 (40.3 bits), Expect = 4.7e-96, Sum P(8) = 4.7e-96
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 920 SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDXXXXXXX 977
+P + +TF Y+ KY + L + QPLL + + + NLL + N
Sbjct: 941 TPLSKFPSPEYETFAEYYKTKYNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1000
Query: 978 XXXXMNTKK---PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1033
K Q + PEL +P S+ + LPS++ RL L+ A +LR +
Sbjct: 1001 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQ 1059
Score = 80 (33.2 bits), Expect = 2.0e-77, Sum P(6) = 2.0e-77
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHE-GQLSARRSWAVCNSTL 1107
+RLE LGD++L Y ++ HL+ P++H G L+ RS A+ N+T+
Sbjct: 1645 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRS-ALVNNTI 1687
Score = 78 (32.5 bits), Expect = 4.7e-96, Sum P(8) = 4.7e-96
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVK 1295
I+ + ESKI Y F K L +A THAS + + Y+ L+ +L IT+++
Sbjct: 1606 ISGFLNFESKINYTFKNKAYLLQAFTHASYH-YNTITDCYQRLEFLGDAILDYLITKHLY 1664
Query: 1296 SFPK---PGETTD 1305
P+ PG TD
Sbjct: 1665 EDPRQHSPGVLTD 1677
Score = 67 (28.6 bits), Expect = 4.7e-96, Sum P(8) = 4.7e-96
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1178 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1212
+ K+IADC EAL+G Y G AA + LG+
Sbjct: 1530 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGL 1564
Score = 51 (23.0 bits), Expect = 2.6e-47, Sum P(3) = 2.6e-47
Identities = 31/129 (24%), Positives = 50/129 (38%)
Query: 1419 LKKLEVCEKRISKGASNTGKLGD-DCRQTTKEDLPEPPSCKRQK--GTEAAIPAGDSCKK 1475
LK + EK + S + + D + T +D PP R + G +
Sbjct: 562 LKTYKAIEKILRNKCSKSAECNDFELEPVTDDDNVLPPYVLRSEDGGPRVTMNTAIGHVN 621
Query: 1476 AYCMTVGT-PV--VAP----INMKKGGPRTSLFQLCKTMLW-PM--PTFETTESKSRTL- 1524
YC + + P +AP + M GG R++LF + L P+ P + +
Sbjct: 622 RYCARLPSDPFTHLAPKCKTVEMNTGGYRSTLFLPINSPLRVPVTGPVMNCARLAEKAVA 681
Query: 1525 LVFCEGLEK 1533
L+ CE L K
Sbjct: 682 LLCCEKLHK 690
Score = 44 (20.5 bits), Expect = 1.1e-66, Sum P(5) = 1.1e-66
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 1291 TEYVKSFPKPGETTD-------SGPSMKAPKALG 1317
+E S P P ET+ +GP+ +PK LG
Sbjct: 1240 SETATSTPAPSETSSEDCRSACAGPAWDSPKTLG 1273
Score = 40 (19.1 bits), Expect = 1.0e-82, Sum P(6) = 1.0e-82
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 1276 YKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPK 1314
Y+H++ ++L+ K +P TD G KAPK
Sbjct: 1426 YEHIRFIDSMLIGSGAFGKKISLQP---TDPGYEWKAPK 1461
Score = 37 (18.1 bits), Expect = 6.9e-73, Sum P(7) = 6.9e-73
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 937 FSEKYGIVLIHPGQPLLRLKQSHNPH 962
F +K + PG K++HN H
Sbjct: 1442 FGKKISLQPTDPGYEWKAPKKAHNSH 1467
Score = 37 (18.1 bits), Expect = 2.0e-55, Sum P(5) = 2.0e-55
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 1134 GQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGA 1193
G+L +P G +T++ + ++ V G+P R K I +C L G
Sbjct: 692 GELDDHLMPV--GKETVKYEEELDLHDEEETSVPGRPGSTKRRQCSPKAIPEC---LRGC 746
Query: 1194 YYV 1196
Y V
Sbjct: 747 YPV 749
>UNIPROTKB|F1NJX0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0005524
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00818350 EMBL:AADN02003674
Ensembl:ENSGALT00000037569 ArrayExpress:F1NJX0 Uniprot:F1NJX0
Length = 1921
Score = 371 (135.7 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 111/377 (29%), Positives = 182/377 (48%)
Query: 1 MHSP-LNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKR 59
M SP L SL + ++ +P MG + + + + PR YQ+++ E A
Sbjct: 1 MKSPALQSLSMAGLQLMTPASSPMGPF---FGLPWQQEAIHDNIYTPRKYQVELLEAALD 57
Query: 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAPTVHLVHQQYDVIRVHT 117
NTI L TG+GKT IAV+L K+++ I+ + K K +FL + + V QQ +R H+
Sbjct: 58 HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHS 117
Query: 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDEC 177
D +V EY + + W + W +E +K+ VLVMT + L LR +LSL + +V DEC
Sbjct: 118 DLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYLSLSNINLLVFDEC 177
Query: 178 HHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQV 237
H A +HPY +IMK + P++ G+TAS + G + E +I +LE L S
Sbjct: 178 HLAIQDHPYREIMK-ICEDYPSCPRILGLTAS--ILNGKCDPAELEEKIKKLEKILKSNA 234
Query: 238 FTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWSKFDASLSKLQGSQLNC 295
E T++ V + C CG +D G + D +L L ++
Sbjct: 235 ---ETATDLVVLDRYTSQPCEIVVD---CGPYTDKSGLYGRLLRELDEALHFLNDCNISV 288
Query: 296 YKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351
+ D ++ LSD A ++ +C D++ + E L+K +K ++E E++R
Sbjct: 289 HSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE-----LQKYIKHEQE-ELHR 342
Query: 352 QSSLQCKYFLEEVLHVI 368
+ L FL ++ H +
Sbjct: 343 KFLLFTDTFLRKI-HAL 358
Score = 216 (81.1 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 50/127 (39%), Positives = 74/127 (58%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV----- 462
T +LC IIFVER A V+ R +K+ P L +++ ++TG + K
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEF 498
Query: 463 --QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
Q+EVL FR + NLL AT ++EEG+ +P C+ V+RFDLP SY+QS+GRAR S
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558
Query: 521 QFILMLE 527
+I++ +
Sbjct: 559 NYIMLAD 565
Score = 206 (77.6 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 43/91 (47%), Positives = 59/91 (64%)
Query: 1047 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1106
LIL+ALT + F++ERLE+LGDS LK+A++ +LF TYP HEG+LS RS V N
Sbjct: 1297 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1356
Query: 1107 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1136
L++LG + L + S FDP W+ PG +
Sbjct: 1357 LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYI 1387
Score = 193 (73.0 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 45/125 (36%), Positives = 75/125 (60%)
Query: 567 VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA-EEAYECELTLPSNAPFQ-TIVGPTS 624
VT ++++ I+RYC LPSD + P K + + + L LP N+P + +IVGP
Sbjct: 625 VTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLPINSPLRASIVGPPM 684
Query: 625 RNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPGA-GTTK 679
L++++V L CEKLH++G L+DHL+P +V+ E +L ++ S+PG G+TK
Sbjct: 685 SCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTK 744
Query: 680 RKELH 684
R++ +
Sbjct: 745 RRQCY 749
Score = 113 (44.8 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350
E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++
Sbjct: 1793 EDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLI 1841
Score = 99 (39.9 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 920 SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDXXXXXXX 977
+P + +TF Y+ KY + L + QPLL + + + NLL + N
Sbjct: 955 TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014
Query: 978 XXXXMNTKK---PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1033
K Q + PEL +P S+ + LPS++ RL L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073
Score = 80 (33.2 bits), Expect = 2.4e-75, Sum P(6) = 2.4e-75
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHE-GQLSARRSWAVCNSTL 1107
+RLE LGD++L Y ++ HL+ P++H G L+ RS A+ N+T+
Sbjct: 1701 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRS-ALVNNTI 1743
Score = 78 (32.5 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVK 1295
I+ ++ E KI Y F K L +A THAS + + Y+ L+ +L IT+++
Sbjct: 1662 ISGFENFEKKINYSFKNKAYLLQAFTHASYH-YNTITDCYQRLEFLGDAILDYLITKHLY 1720
Query: 1296 SFPK---PGETTD 1305
P+ PG TD
Sbjct: 1721 EDPRQHSPGVLTD 1733
Score = 67 (28.6 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1178 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1212
+ K+IADC EAL+G Y G AA + LG+
Sbjct: 1553 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGL 1587
Score = 43 (20.2 bits), Expect = 3.8e-81, Sum P(6) = 3.8e-81
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 1277 KHLQHCSTLLLSQITEYVKSFPKPG-ETTDSGPSMKAPK--ALGDL 1319
+H++ ++L+ +VK TTDS KAPK +LG++
Sbjct: 1447 EHIKFIDSMLMGS-GAFVKKISLSHFSTTDSNYEWKAPKKSSLGNV 1491
Score = 37 (18.1 bits), Expect = 4.0e-44, Sum P(3) = 4.0e-44
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 1496 PRTSLFQLCKTMLWPMPTFETT 1517
P T L CKT P TF +T
Sbjct: 645 PFTHLAPKCKTRELPDHTFYST 666
>UNIPROTKB|Q25BN1 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0030423 "targeting of mRNA
for destruction involved in RNA interference" evidence=ISS]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=ISS] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 CTD:23405 HOGENOM:HOG000001567 EMBL:AB253768
IPI:IPI00818350 RefSeq:NP_001035555.1 UniGene:Gga.33735
ProteinModelPortal:Q25BN1 SMR:Q25BN1 STRING:Q25BN1 GeneID:423437
KEGG:gga:423437 NextBio:20825910 Uniprot:Q25BN1
Length = 1921
Score = 371 (135.7 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 111/377 (29%), Positives = 182/377 (48%)
Query: 1 MHSP-LNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKR 59
M SP L SL + ++ +P MG + + + + PR YQ+++ E A
Sbjct: 1 MKSPALQSLSMAGLQLMTPASSPMGPF---FGLPWQQEAIHDNIYTPRKYQVELLEAALD 57
Query: 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAPTVHLVHQQYDVIRVHT 117
NTI L TG+GKT IAV+L K+++ I+ + K K +FL + + V QQ +R H+
Sbjct: 58 HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHS 117
Query: 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDEC 177
D +V EY + + W + W +E +K+ VLVMT + L LR +LSL + +V DEC
Sbjct: 118 DLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYLSLSNINLLVFDEC 177
Query: 178 HHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQV 237
H A +HPY +IMK + P++ G+TAS + G + E +I +LE L S
Sbjct: 178 HLAIQDHPYREIMK-ICEDYPSCPRILGLTAS--ILNGKCDPAELEEKIKKLEKILKSNA 234
Query: 238 FTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWSKFDASLSKLQGSQLNC 295
E T++ V + C CG +D G + D +L L ++
Sbjct: 235 ---ETATDLVVLDRYTSQPCEIVVD---CGPYTDKSGLYGRLLRELDEALHFLNDCNISV 288
Query: 296 YKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351
+ D ++ LSD A ++ +C D++ + E L+K +K ++E E++R
Sbjct: 289 HSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE-----LQKYIKHEQE-ELHR 342
Query: 352 QSSLQCKYFLEEVLHVI 368
+ L FL ++ H +
Sbjct: 343 KFLLFTDTFLRKI-HAL 358
Score = 216 (81.1 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 50/127 (39%), Positives = 74/127 (58%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV----- 462
T +LC IIFVER A V+ R +K+ P L +++ ++TG + K
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEF 498
Query: 463 --QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
Q+EVL FR + NLL AT ++EEG+ +P C+ V+RFDLP SY+QS+GRAR S
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558
Query: 521 QFILMLE 527
+I++ +
Sbjct: 559 NYIMLAD 565
Score = 206 (77.6 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 43/91 (47%), Positives = 59/91 (64%)
Query: 1047 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1106
LIL+ALT + F++ERLE+LGDS LK+A++ +LF TYP HEG+LS RS V N
Sbjct: 1297 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1356
Query: 1107 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1136
L++LG + L + S FDP W+ PG +
Sbjct: 1357 LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYI 1387
Score = 193 (73.0 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 45/125 (36%), Positives = 75/125 (60%)
Query: 567 VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA-EEAYECELTLPSNAPFQ-TIVGPTS 624
VT ++++ I+RYC LPSD + P K + + + L LP N+P + +IVGP
Sbjct: 625 VTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLPINSPLRASIVGPPM 684
Query: 625 RNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPGA-GTTK 679
L++++V L CEKLH++G L+DHL+P +V+ E +L ++ S+PG G+TK
Sbjct: 685 SCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTK 744
Query: 680 RKELH 684
R++ +
Sbjct: 745 RRQCY 749
Score = 113 (44.8 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350
E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++
Sbjct: 1793 EDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLI 1841
Score = 99 (39.9 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 920 SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDXXXXXXX 977
+P + +TF Y+ KY + L + QPLL + + + NLL + N
Sbjct: 955 TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014
Query: 978 XXXXMNTKK---PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1033
K Q + PEL +P S+ + LPS++ RL L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073
Score = 80 (33.2 bits), Expect = 2.4e-75, Sum P(6) = 2.4e-75
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHE-GQLSARRSWAVCNSTL 1107
+RLE LGD++L Y ++ HL+ P++H G L+ RS A+ N+T+
Sbjct: 1701 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRS-ALVNNTI 1743
Score = 78 (32.5 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVK 1295
I+ ++ E KI Y F K L +A THAS + + Y+ L+ +L IT+++
Sbjct: 1662 ISGFENFEKKINYSFKNKAYLLQAFTHASYH-YNTITDCYQRLEFLGDAILDYLITKHLY 1720
Query: 1296 SFPK---PGETTD 1305
P+ PG TD
Sbjct: 1721 EDPRQHSPGVLTD 1733
Score = 67 (28.6 bits), Expect = 4.9e-94, Sum P(8) = 4.9e-94
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1178 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1212
+ K+IADC EAL+G Y G AA + LG+
Sbjct: 1553 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGL 1587
Score = 43 (20.2 bits), Expect = 3.8e-81, Sum P(6) = 3.8e-81
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 1277 KHLQHCSTLLLSQITEYVKSFPKPG-ETTDSGPSMKAPK--ALGDL 1319
+H++ ++L+ +VK TTDS KAPK +LG++
Sbjct: 1447 EHIKFIDSMLMGS-GAFVKKISLSHFSTTDSNYEWKAPKKSSLGNV 1491
Score = 37 (18.1 bits), Expect = 4.0e-44, Sum P(3) = 4.0e-44
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 1496 PRTSLFQLCKTMLWPMPTFETT 1517
P T L CKT P TF +T
Sbjct: 645 PFTHLAPKCKTRELPDHTFYST 666
>UNIPROTKB|Q9UPY3 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070
"zygote asymmetric cell division" evidence=IEA] [GO:0019827 "stem
cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb
interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral
cortex development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045069
"regulation of viral genome replication" evidence=IEA] [GO:0045664
"regulation of neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0048713 "regulation of oligodendrocyte
differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis
of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013
"cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner
ear receptor cell development" evidence=IEA] [GO:0060576
"intestinal epithelial cell development" evidence=IEA] [GO:0070173
"regulation of enamel mineralization" evidence=IEA] [GO:0071335
"hair follicle cell proliferation" evidence=IEA] [GO:2000630
"positive regulation of miRNA metabolic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031054 "pre-miRNA processing"
evidence=IDA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IMP] [GO:0030422 "production
of siRNA involved in RNA interference" evidence=IDA] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0048812 "neuron projection morphogenesis" evidence=ISS]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISS] [GO:0031643 "positive regulation of myelination"
evidence=ISS] [GO:0021675 "nerve development" evidence=ISS]
[GO:0014040 "positive regulation of Schwann cell differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=ISS] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISS] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005829 GO:GO:0005524
GO:GO:0010070 GO:GO:0006915 GO:GO:0021987 GO:GO:0043066
GO:GO:0045664 EMBL:CH471061 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0010626 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:23405
HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W EMBL:AB028449 EMBL:HM595745
EMBL:AJ132261 EMBL:AB023145 EMBL:AL356017 EMBL:AL390254
EMBL:BC150287 IPI:IPI00219036 IPI:IPI00977554 RefSeq:NP_001182502.1
RefSeq:NP_001258211.1 RefSeq:NP_085124.2 RefSeq:NP_803187.1
UniGene:Hs.87889 PDB:2EB1 PDBsum:2EB1 ProteinModelPortal:Q9UPY3
SMR:Q9UPY3 DIP:DIP-29664N IntAct:Q9UPY3 MINT:MINT-1957525
STRING:Q9UPY3 PhosphoSite:Q9UPY3 DMDM:257051056 PaxDb:Q9UPY3
PRIDE:Q9UPY3 Ensembl:ENST00000343455 Ensembl:ENST00000393063
Ensembl:ENST00000526495 Ensembl:ENST00000527414
Ensembl:ENST00000541352 GeneID:23405 KEGG:hsa:23405 UCSC:uc001ydv.2
GeneCards:GC14M095552 HGNC:HGNC:17098 HPA:HPA000694 MIM:138800
MIM:601200 MIM:606241 neXtProt:NX_Q9UPY3 Orphanet:276399
Orphanet:99916 Orphanet:284343 PharmGKB:PA38437 HOVERGEN:HBG107811
InParanoid:Q9UPY3 OMA:FLEYDQE PhylomeDB:Q9UPY3 BRENDA:3.1.26.3
ChiTaRS:DICER1 EvolutionaryTrace:Q9UPY3 GenomeRNAi:23405
NextBio:45577 ArrayExpress:Q9UPY3 Bgee:Q9UPY3 CleanEx:HS_DICER1
Genevestigator:Q9UPY3 GermOnline:ENSG00000100697 GO:GO:0071335
GO:GO:0060576 GO:GO:0021889 GO:GO:0032290 GO:GO:0031643
GO:GO:0014040 GO:GO:0070173 GO:GO:0048713 Uniprot:Q9UPY3
Length = 1922
Score = 360 (131.8 bits), Expect = 1.9e-93, Sum P(8) = 1.9e-93
Identities = 98/333 (29%), Positives = 167/333 (50%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
+ PR YQ+++ E A NTI L TG+GKT IAV+L K+++ I+ + + K +FL
Sbjct: 42 YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVN 101
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ + V QQ +R H+D +V EY + W + W +E K+ VL+MT + L+ L+
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKN 161
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
+LSL + +V DECH A +HPY +IMK + P++ G+TAS + G +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
E +I +LE L S E T++ V + C CG +D G E
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272
Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
+ + +L+ + ++ + D ++ LSD A ++ +C D++ + E
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328
Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI 368
L+K +K ++E E++R+ L FL ++ H +
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKI-HAL 358
Score = 217 (81.4 bits), Expect = 1.9e-93, Sum P(8) = 1.9e-93
Identities = 51/128 (39%), Positives = 76/128 (59%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGS--------TTSVDALT 459
T +LC IIFVER A V+ R +K+ P L +++ ++TG ++A
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEF 498
Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
K Q+EVL FR + NLL AT ++EEG+ +P C+ V+RFDLP SY+QS+GRAR
Sbjct: 499 RK-QEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPI 557
Query: 520 SQFILMLE 527
S +I++ +
Sbjct: 558 SNYIMLAD 565
Score = 211 (79.3 bits), Expect = 1.9e-93, Sum P(8) = 1.9e-93
Identities = 49/125 (39%), Positives = 70/125 (56%)
Query: 1013 LLPSVMQRLESLM--LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLG 1070
++P ++ L + S+ I SR LIL+ALT + F++ERLE+LG
Sbjct: 1260 VMPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLG 1319
Query: 1071 DSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-R 1129
DS LK+A++ +LF TYP HEG+LS RS V N L++LG + L + S FDP
Sbjct: 1320 DSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVN 1379
Query: 1130 WVAPG 1134
W+ PG
Sbjct: 1380 WLPPG 1384
Score = 192 (72.6 bits), Expect = 1.9e-93, Sum P(8) = 1.9e-93
Identities = 45/128 (35%), Positives = 76/128 (59%)
Query: 564 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVG 621
G VT ++++ I+RYC LPSD + P + + + + L LP N+P + +IVG
Sbjct: 622 GPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVG 681
Query: 622 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPGA-G 676
P L++++V L CEKLH++G L+DHL+P +V+ E +L ++ S+PG G
Sbjct: 682 PPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPG 741
Query: 677 TTKRKELH 684
+TKR++ +
Sbjct: 742 STKRRQCY 749
Score = 114 (45.2 bits), Expect = 1.9e-93, Sum P(8) = 1.9e-93
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350
E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++
Sbjct: 1794 EDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLI 1842
Score = 99 (39.9 bits), Expect = 1.9e-93, Sum P(8) = 1.9e-93
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 920 SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDXXXXXXX 977
+P + +TF Y+ KY + L + QPLL + + + NLL + N
Sbjct: 955 TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014
Query: 978 XXXXMNTKK---PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1033
K Q + PEL +P S+ + LPS++ RL L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073
Score = 80 (33.2 bits), Expect = 3.0e-74, Sum P(6) = 3.0e-74
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHE-GQLSARRSWAVCNSTL 1107
+RLE LGD++L Y ++ HL+ P++H G L+ RS A+ N+T+
Sbjct: 1702 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRS-ALVNNTI 1744
Score = 78 (32.5 bits), Expect = 1.9e-93, Sum P(8) = 1.9e-93
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVK 1295
I+ ++ E KI Y F K L +A THAS + + Y+ L+ +L IT+++
Sbjct: 1663 ISGFENFEKKINYRFKNKAYLLQAFTHASYH-YNTITDCYQRLEFLGDAILDYLITKHLY 1721
Query: 1296 SFPK---PGETTD 1305
P+ PG TD
Sbjct: 1722 EDPRQHSPGVLTD 1734
Score = 67 (28.6 bits), Expect = 1.9e-93, Sum P(8) = 1.9e-93
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1178 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1212
+ K+IADC EAL+G Y G AA + LG+
Sbjct: 1554 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGL 1588
Score = 49 (22.3 bits), Expect = 4.6e-64, Sum P(5) = 4.6e-64
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 1262 THASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLE 1321
T S+Q Y Y+N + C+ LLS +Y+ T+D P M D ++
Sbjct: 1215 TSYSIQNLYSYENQPQPSDECT--LLSN--KYLDGNANKS-TSDGSPVMAVMPGTTDTIQ 1269
Query: 1322 SIVG 1325
+ G
Sbjct: 1270 VLKG 1273
Score = 46 (21.3 bits), Expect = 9.1e-81, Sum P(6) = 9.1e-81
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 1277 KHLQHCSTLLLSQITEYVKSFP-KPGETTDSGPSMKAPK--ALGDL 1319
+H++ +L+ +VK P TTDS K PK +LG +
Sbjct: 1448 EHIRFIDNMLMGS-GAFVKKISLSPFSTTDSAYEWKMPKKSSLGSM 1492
Score = 37 (18.1 bits), Expect = 1.6e-21, Sum P(5) = 1.6e-21
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 289 QGSQLNCYK 297
QG+QLN YK
Sbjct: 1198 QGNQLNYYK 1206
>MGI|MGI:2177178 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IMP] [GO:0001932 "regulation of protein phosphorylation"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=ISO;ISA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005793 "endoplasmic reticulum-Golgi
intermediate compartment" evidence=ISO] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008593 "regulation of Notch signaling pathway" evidence=IC]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010070
"zygote asymmetric cell division" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0010626 "negative
regulation of Schwann cell proliferation" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0014040
"positive regulation of Schwann cell differentiation" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IMP] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021675 "nerve development"
evidence=IMP] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IMP] [GO:0021987 "cerebral cortex
development" evidence=IMP] [GO:0030324 "lung development"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO;IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0030426 "growth cone" evidence=ISO] [GO:0031047 "gene silencing
by RNA" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=ISO;IDA] [GO:0031069 "hair follicle morphogenesis"
evidence=IMP] [GO:0031641 "regulation of myelination" evidence=IMP]
[GO:0031643 "positive regulation of myelination" evidence=IMP]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP] [GO:0035198 "miRNA binding"
evidence=IDA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IMP] [GO:0042981 "regulation of
apoptotic process" evidence=IMP] [GO:0043066 "negative regulation
of apoptotic process" evidence=IMP] [GO:0045069 "regulation of
viral genome replication" evidence=IMP] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] [GO:0045664 "regulation of
neuron differentiation" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048536 "spleen development" evidence=IMP] [GO:0048565
"digestive tract development" evidence=IMP] [GO:0048713 "regulation
of oligodendrocyte differentiation" evidence=IMP] [GO:0048730
"epidermis morphogenesis" evidence=IMP] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IMP] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] [GO:0050767
"regulation of neurogenesis" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0051726 "regulation of cell cycle" evidence=IMP]
[GO:0055013 "cardiac muscle cell development" evidence=IMP]
[GO:0060119 "inner ear receptor cell development" evidence=IMP]
[GO:0060253 "negative regulation of glial cell proliferation"
evidence=IMP] [GO:0060576 "intestinal epithelial cell development"
evidence=IGI] [GO:0070173 "regulation of enamel mineralization"
evidence=IMP] [GO:0071335 "hair follicle cell proliferation"
evidence=IMP] [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 MGI:MGI:2177178 GO:GO:0005524
GO:GO:0010070 GO:GO:0005737 GO:GO:0006915 GO:GO:0021987
GO:GO:0043066 GO:GO:0045664 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0001932 GO:GO:0016075 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0010626
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
HOVERGEN:HBG107811 GO:GO:0071335 GO:GO:0060576 GO:GO:0021889
GO:GO:0032290 GO:GO:0031643 GO:GO:0014040 GO:GO:0070173
GO:GO:0048713 EMBL:AF484523 EMBL:AF484524 EMBL:AB081470
EMBL:AF430845 IPI:IPI00227881 UniGene:Mm.21135 PDB:3C4B PDB:3C4T
PDBsum:3C4B PDBsum:3C4T ProteinModelPortal:Q8R418 SMR:Q8R418
DIP:DIP-29721N IntAct:Q8R418 STRING:Q8R418 PhosphoSite:Q8R418
PaxDb:Q8R418 PRIDE:Q8R418 UCSC:uc007oxi.1 InParanoid:Q8R419
EvolutionaryTrace:Q8R418 CleanEx:MM_DICER1 Genevestigator:Q8R418
GermOnline:ENSMUSG00000041415 GO:GO:0060119 GO:GO:2000630
GO:GO:0008593 Uniprot:Q8R418
Length = 1916
Score = 357 (130.7 bits), Expect = 4.1e-93, Sum P(9) = 4.1e-93
Identities = 100/333 (30%), Positives = 163/333 (48%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
+ PR YQ+++ E A NTI L TG+GKT IAV+L K++A I+ N K +FL
Sbjct: 42 YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVN 101
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ + V QQ +R H+D +V EY + W + W +E K+ VL+MT + L L+
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKN 161
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
+LSL + +V DECH A +HPY +IMK + P++ G+TAS + G +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPEE 218
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
E +I +LE L S E T++ V + C CG +D G E
Sbjct: 219 LEEKIQKLERILRSDA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272
Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
+ +A+L + + + D ++ LSD A ++ +C D++ + E
Sbjct: 273 ELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328
Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI 368
L+K +K ++E E++R+ L L ++ H +
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTLLRKI-HAL 358
Score = 218 (81.8 bits), Expect = 4.1e-93, Sum P(9) = 4.1e-93
Identities = 49/124 (39%), Positives = 73/124 (58%)
Query: 1014 LPSVMQRLESLM--LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGD 1071
+P++M +++L + S+ + SR LIL+ALT + F++ERLE+LGD
Sbjct: 1261 MPAMMNAVKALKDRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1320
Query: 1072 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RW 1130
S LK+A++ +LF TYP HEG+LS RS V N L++LG + L + S FDP W
Sbjct: 1321 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1380
Query: 1131 VAPG 1134
+ PG
Sbjct: 1381 LPPG 1384
Score = 218 (81.8 bits), Expect = 4.1e-93, Sum P(9) = 4.1e-93
Identities = 51/128 (39%), Positives = 77/128 (60%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGS--------TTSVDALT 459
T +LC IIFVER A V+ R +K+ P L +++ ++TG + ++A
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEF 498
Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
K Q+EVL FR + NLL AT V+EEG+ +P C+ V+RFDLP SY+QS+GRAR
Sbjct: 499 RK-QEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPI 557
Query: 520 SQFILMLE 527
S ++++ +
Sbjct: 558 SNYVMLAD 565
Score = 191 (72.3 bits), Expect = 4.1e-93, Sum P(9) = 4.1e-93
Identities = 44/128 (34%), Positives = 77/128 (60%)
Query: 564 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVG 621
G VT ++++ I+RYC LPSD + P + + + + L LP N+P + +IVG
Sbjct: 622 GPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVG 681
Query: 622 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPGA-G 676
P + L++++V L CEKLH++G L++HL+P +V+ E +L ++ S+PG G
Sbjct: 682 PPMDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPG 741
Query: 677 TTKRKELH 684
+TKR++ +
Sbjct: 742 STKRRQCY 749
Score = 114 (45.2 bits), Expect = 4.1e-93, Sum P(9) = 4.1e-93
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350
E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++
Sbjct: 1788 EDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLI 1836
Score = 99 (39.9 bits), Expect = 4.1e-93, Sum P(9) = 4.1e-93
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 920 SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDXXXXXXX 977
+P + +TF Y+ KY + L + QPLL + + + NLL + N
Sbjct: 955 TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014
Query: 978 XXXXMNTKK---PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1033
K Q + PEL +P S+ + LPS++ RL L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073
Score = 80 (33.2 bits), Expect = 4.5e-73, Sum P(7) = 4.5e-73
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHE-GQLSARRSWAVCNSTL 1107
+RLE LGD++L Y ++ HL+ P++H G L+ RS A+ N+T+
Sbjct: 1696 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRS-ALVNNTI 1738
Score = 76 (31.8 bits), Expect = 4.1e-93, Sum P(9) = 4.1e-93
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVK 1295
I+ + E KI Y F K L +A THAS + + Y+ L+ +L IT+++
Sbjct: 1657 ISGFETFEKKINYRFKNKAYLLQAFTHASYH-YNTITDCYQRLEFLGDAILDYLITKHLY 1715
Query: 1296 SFPK---PGETTD 1305
P+ PG TD
Sbjct: 1716 EDPRQHSPGVLTD 1728
Score = 67 (28.6 bits), Expect = 4.1e-93, Sum P(9) = 4.1e-93
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1178 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1212
+ K+IADC EAL+G Y G AA + LG+
Sbjct: 1550 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGL 1584
Score = 54 (24.1 bits), Expect = 4.1e-61, Sum P(9) = 4.1e-61
Identities = 34/149 (22%), Positives = 68/149 (45%)
Query: 266 CG--SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
CG +D G E + +A+L + + + D ++ LSD A ++
Sbjct: 257 CGPFTDRSGLYERLLMELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVV---- 312
Query: 324 LGLICAYEAVKIC---LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
LG CA + + L+K +K ++E E++R+ L F + +L I + L ++ F
Sbjct: 313 LGPWCADKVAGMMVRELQKYIKHEQE-ELHRKFLL----FTDTLLRKIHA---LCEEYFS 364
Query: 381 DFGFDYSKAVDLGYISTKLHELLQLFLSF 409
++DL Y++ K+ +LL++ +
Sbjct: 365 P------ASLDLKYVTPKVMKLLEILRKY 387
Score = 48 (22.0 bits), Expect = 1.0e-62, Sum P(6) = 1.0e-62
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 1262 THASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSG-PSM-KAPKALGDL 1319
T +Q Y Y+N K C L + + + G S P+M A KAL D
Sbjct: 1215 TSYPIQNLYNYENQPKPSNECPLLSNTYLDGNANTSTSDGSPAVSTMPAMMNAVKALKDR 1274
Query: 1320 LES 1322
++S
Sbjct: 1275 MDS 1277
Score = 39 (18.8 bits), Expect = 1.2e-79, Sum P(7) = 1.2e-79
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 1277 KHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPK--ALGDL 1319
+H+Q ++L+ K P +DS K PK +LG +
Sbjct: 1444 EHIQFIDSMLMGSGAFVRKISLSPFSASDSAYEWKMPKKASLGSM 1488
Score = 38 (18.4 bits), Expect = 4.1e-93, Sum P(9) = 4.1e-93
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 812 YLLLPLEIVNTFG 824
Y +LPL +VN G
Sbjct: 876 YCVLPLNVVNDSG 888
>UNIPROTKB|E2RIN4 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000630 "positive regulation of miRNA
metabolic process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 CTD:23405 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:AAEX03005955 RefSeq:XP_868526.2
Ensembl:ENSCAFT00000028082 GeneID:480426 KEGG:cfa:480426
Uniprot:E2RIN4
Length = 1923
Score = 362 (132.5 bits), Expect = 4.8e-93, Sum P(8) = 4.8e-93
Identities = 102/333 (30%), Positives = 168/333 (50%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
+ PR YQ+++ E A NTI L TG+GKT IAV+L K+++ I+ N K +FL
Sbjct: 42 YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 101
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ + V QQ +R H+D +V EY + W + W +E K+ VLVMT + L+ L+
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKEKWNQEFTKHQVLVMTCYVALNVLKN 161
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
+LSL + +V DECH A +HPY +IMK + P++ G+TAS + G +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY-DQSKFCG-SDLKGKLEVSWS 279
E +I +LE L S E T++ V + C D F S L G+L V
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYGRLLV--- 272
Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
+ + +L+ + ++ + D ++ LSD A ++ +C D++ + E
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328
Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI 368
L+K +K ++E E++R+ L FL ++ H +
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKI-HAL 358
Score = 217 (81.4 bits), Expect = 4.8e-93, Sum P(8) = 4.8e-93
Identities = 51/128 (39%), Positives = 76/128 (59%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGS--------TTSVDALT 459
T +LC IIFVER A V+ R +K+ P L +++ ++TG ++A
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEF 498
Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
K Q+EVL FR + NLL AT ++EEG+ +P C+ V+RFDLP SY+QS+GRAR
Sbjct: 499 RK-QEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPI 557
Query: 520 SQFILMLE 527
S +I++ +
Sbjct: 558 SNYIMLAD 565
Score = 206 (77.6 bits), Expect = 4.8e-93, Sum P(8) = 4.8e-93
Identities = 45/98 (45%), Positives = 60/98 (61%)
Query: 1038 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1097
SR LIL+ALT + F++ERLE+LGDS LK+A++ +LF TYP HEG+LS
Sbjct: 1288 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYM 1347
Query: 1098 RSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1134
RS V N L++LG + L + S FDP W+ PG
Sbjct: 1348 RSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1385
Score = 192 (72.6 bits), Expect = 4.8e-93, Sum P(8) = 4.8e-93
Identities = 45/128 (35%), Positives = 76/128 (59%)
Query: 564 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVG 621
G VT ++++ I+RYC LPSD + P + + + + L LP N+P + +IVG
Sbjct: 622 GPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVG 681
Query: 622 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPGA-G 676
P L++++V L CEKLH++G L+DHL+P +V+ E +L ++ S+PG G
Sbjct: 682 PPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPG 741
Query: 677 TTKRKELH 684
+TKR++ +
Sbjct: 742 STKRRQCY 749
Score = 113 (44.8 bits), Expect = 4.8e-93, Sum P(8) = 4.8e-93
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350
E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++
Sbjct: 1795 EDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLI 1843
Score = 99 (39.9 bits), Expect = 4.8e-93, Sum P(8) = 4.8e-93
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 920 SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDXXXXXXX 977
+P + +TF Y+ KY + L + QPLL + + + NLL + N
Sbjct: 955 TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014
Query: 978 XXXXMNTKK---PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1033
K Q + PEL +P S+ + LPS++ RL L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073
Score = 80 (33.2 bits), Expect = 2.1e-73, Sum P(7) = 2.1e-73
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHE-GQLSARRSWAVCNSTL 1107
+RLE LGD++L Y ++ HL+ P++H G L+ RS A+ N+T+
Sbjct: 1703 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRS-ALVNNTI 1745
Score = 78 (32.5 bits), Expect = 4.8e-93, Sum P(8) = 4.8e-93
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVK 1295
I+ ++ E KI Y F K L +A THAS + + Y+ L+ +L IT+++
Sbjct: 1664 ISGFENFEKKINYRFKNKAYLLQAFTHASYH-YNTITDCYQRLEFLGDAILDYLITKHLY 1722
Query: 1296 SFPK---PGETTD 1305
P+ PG TD
Sbjct: 1723 EDPRQHSPGVLTD 1735
Score = 67 (28.6 bits), Expect = 4.8e-93, Sum P(8) = 4.8e-93
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1178 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1212
+ K+IADC EAL+G Y G AA + LG+
Sbjct: 1555 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGL 1589
Score = 46 (21.3 bits), Expect = 1.8e-80, Sum P(6) = 1.8e-80
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 1277 KHLQHCSTLLLSQITEYVKSFP-KPGETTDSGPSMKAPK--ALGDL 1319
+H++ +L+ +VK P TTDS K PK +LG +
Sbjct: 1449 EHIKFIDNMLMGS-GAFVKKISLSPFSTTDSAYEWKMPKKSSLGSM 1493
Score = 46 (21.3 bits), Expect = 6.1e-63, Sum P(6) = 6.1e-63
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 1262 THASVQEFYCYQNLYKHLQHCSTLLLSQITE--YVKSFPKPGETTDSGP-SMKAPKALGD 1318
T +Q Y Y+N K C TLL ++ + KS TT + P + +A +AL D
Sbjct: 1216 TSYPIQNLYNYENQPKPSDEC-TLLSNKYLDGNANKSTSDGSPTTAAMPGTTEAVRALKD 1274
Query: 1319 LLES 1322
+ S
Sbjct: 1275 KMGS 1278
Score = 37 (18.1 bits), Expect = 1.4e-75, Sum P(8) = 1.4e-75
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 1020 RLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMER 1065
R SL Q+ +NC + P L +E +T L S +
Sbjct: 1140 RTSSLENHDQM--SVNCRTLFSESPGKLQIEVVTDLTAINGLSYNK 1183
Score = 37 (18.1 bits), Expect = 1.0e-53, Sum P(6) = 1.0e-53
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 444 TVAYLTGSTTSVDALTPKVQKE 465
T A + G+T +V AL K+ E
Sbjct: 1258 TTAAMPGTTEAVRALKDKMGSE 1279
Score = 37 (18.1 bits), Expect = 3.9e-20, Sum P(6) = 3.9e-20
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 289 QGSQLNCYK 297
QG+QLN YK
Sbjct: 1199 QGNQLNYYK 1207
>UNIPROTKB|A0MQH0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:10029
"Cricetulus griseus" [GO:0016442 "RNA-induced silencing complex"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EF031271 RefSeq:NP_001231198.1
ProteinModelPortal:A0MQH0 SMR:A0MQH0 GeneID:100689239
Uniprot:A0MQH0
Length = 1917
Score = 361 (132.1 bits), Expect = 7.6e-93, Sum P(8) = 7.6e-93
Identities = 99/333 (29%), Positives = 166/333 (49%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
+ PR YQ+++ E A NTI L TG+GKT IAV+L K++A I+ N K +FL
Sbjct: 42 YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPRAKRTVFLVN 101
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ + V QQ +R H+D +V EY + W + W +E K+ VL+MT + L+ L+
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTKHQVLIMTCYVALNVLKN 161
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
+LSL + +V DECH A +HPY +IMK + P++ G+TAS + G +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCESCPSCPRILGLTAS--ILNGKCDPEE 218
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
E +I +LE L S E T++ V A + C CG +D G E
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYASQPCEIVVD---CGPFTDRSGLYERLLM 272
Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
+ + +++ + ++ + D ++ LSD A ++ +C D++ + E
Sbjct: 273 ELEEAINFINDCNVSVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328
Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI 368
L+K +K ++E E++R+ L L ++ H +
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTLLRKI-HAL 358
Score = 218 (81.8 bits), Expect = 7.6e-93, Sum P(8) = 7.6e-93
Identities = 51/128 (39%), Positives = 77/128 (60%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGS--------TTSVDALT 459
T +LC IIFVER A V+ R +K+ P L +++ ++TG + ++A
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEF 498
Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
K Q+EVL FR + NLL AT V+EEG+ +P C+ V+RFDLP SY+QS+GRAR
Sbjct: 499 RK-QEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPI 557
Query: 520 SQFILMLE 527
S ++++ +
Sbjct: 558 SNYVMLAD 565
Score = 211 (79.3 bits), Expect = 7.6e-93, Sum P(8) = 7.6e-93
Identities = 50/124 (40%), Positives = 70/124 (56%)
Query: 1014 LPSVMQRLESLM--LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGD 1071
+P+VM +L + S+ SR LIL+ALT + F++ERLE+LGD
Sbjct: 1261 MPAVMSAGRALKDRMDSEQSPSAGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1320
Query: 1072 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RW 1130
S LK+A++ +LF TYP HEG+LS RS V N L++LG + L + S FDP W
Sbjct: 1321 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1380
Query: 1131 VAPG 1134
+ PG
Sbjct: 1381 LPPG 1384
Score = 185 (70.2 bits), Expect = 7.6e-93, Sum P(8) = 7.6e-93
Identities = 43/128 (33%), Positives = 76/128 (59%)
Query: 564 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVG 621
G VT ++++ ++RYC LPSD + P + + + + L LP N+P + +IVG
Sbjct: 622 GPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTQELPDGTFYSTLYLPINSPLRASIVG 681
Query: 622 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPGA-G 676
P L++++V L CEKLH++G L++HL+P +V+ E +L ++ S+PG G
Sbjct: 682 PPMGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPG 741
Query: 677 TTKRKELH 684
+TKR++ +
Sbjct: 742 STKRRQCY 749
Score = 113 (44.8 bits), Expect = 7.6e-93, Sum P(8) = 7.6e-93
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350
E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++
Sbjct: 1789 EDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLI 1837
Score = 99 (39.9 bits), Expect = 7.6e-93, Sum P(8) = 7.6e-93
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 920 SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDXXXXXXX 977
+P + +TF Y+ KY + L + QPLL + + + NLL + N
Sbjct: 955 TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014
Query: 978 XXXXMNTKK---PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1033
K Q + PEL +P S+ + LPS++ RL L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073
Score = 80 (33.2 bits), Expect = 1.2e-73, Sum P(6) = 1.2e-73
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHE-GQLSARRSWAVCNSTL 1107
+RLE LGD++L Y ++ HL+ P++H G L+ RS A+ N+T+
Sbjct: 1697 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRS-ALVNNTI 1739
Score = 78 (32.5 bits), Expect = 7.6e-93, Sum P(8) = 7.6e-93
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVK 1295
I+ ++ E KI Y F K L +A THAS + + Y+ L+ +L IT+++
Sbjct: 1658 ISGFENFEKKINYRFKNKAYLLQAFTHASYH-YNTITDCYQRLEFLGDAILDYLITKHLY 1716
Query: 1296 SFPK---PGETTD 1305
P+ PG TD
Sbjct: 1717 EDPRQHSPGVLTD 1729
Score = 67 (28.6 bits), Expect = 7.6e-93, Sum P(8) = 7.6e-93
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1178 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1212
+ K+IADC EAL+G Y G AA + LG+
Sbjct: 1550 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGL 1584
Score = 53 (23.7 bits), Expect = 2.8e-60, Sum P(8) = 2.8e-60
Identities = 37/174 (21%), Positives = 77/174 (44%)
Query: 241 EDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWSKFDASLSKLQGSQLNCYKD 298
E T++ V A + C CG +D G E + + +++ + ++ +
Sbjct: 235 ETATDLVVLDRYASQPCEIVVD---CGPFTDRSGLYERLLMELEEAINFINDCNVSVHSK 291
Query: 299 MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKIC---LEKVLKAQEECEIYRQSSL 355
D ++ LSD A ++ LG CA + + L+K +K ++E E++R+ L
Sbjct: 292 ERDSTLISKQILSDCRAVLVV----LGPWCADKVAGMMVRELQKYIKHEQE-ELHRKFLL 346
Query: 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSF 409
F + +L I + L ++ F ++DL Y++ K+ +LL++ +
Sbjct: 347 ----FTDTLLRKIHA---LCEEHFSP------ASLDLKYVTPKVMKLLEILRKY 387
Score = 50 (22.7 bits), Expect = 1.1e-80, Sum P(6) = 1.1e-80
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 1258 QEAITHASVQEFYCYQNLY-----KHLQHCSTLLLSQITEYVKSFP-KPGETTDSGPSMK 1311
+EA+T + +E Y++ + +H+Q ++L+ +VK P T+DS K
Sbjct: 1420 EEALTWRAPKEEAEYEDDFLEYDQEHIQFIDSMLMGS-GAFVKKISLSPFSTSDSAYEWK 1478
Query: 1312 APK--ALGDL 1319
PK +LG +
Sbjct: 1479 MPKKSSLGSM 1488
Score = 46 (21.3 bits), Expect = 3.1e-62, Sum P(6) = 3.1e-62
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 1262 THASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSG-PS-MKAPKALGDL 1319
T +Q Y Y+N K C+ L + + G S P+ M A +AL D
Sbjct: 1215 TSYPIQNLYHYENQPKPSNECTLLSNKYLDGNANTSTSDGSPAVSTMPAVMSAGRALKDR 1274
Query: 1320 LES 1322
++S
Sbjct: 1275 MDS 1277
Score = 37 (18.1 bits), Expect = 2.5e-79, Sum P(6) = 2.5e-79
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 1437 GKLGDDCRQ 1445
GKLG DC +
Sbjct: 1411 GKLGKDCEE 1419
>UNIPROTKB|F1NP11 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0010070 "zygote asymmetric cell division"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0043066 GO:GO:0051225 GO:GO:0045595
Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0000122 GO:GO:0051726
GO:GO:0003725 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0008026
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 OMA:FLEYDQE GO:GO:0071335
GO:GO:0031643 GO:GO:0070173 EMBL:AADN02003674 IPI:IPI00603674
Ensembl:ENSGALT00000017910 ArrayExpress:F1NP11 Uniprot:F1NP11
Length = 1925
Score = 371 (135.7 bits), Expect = 1.1e-92, Sum P(8) = 1.1e-92
Identities = 111/377 (29%), Positives = 182/377 (48%)
Query: 1 MHSP-LNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKR 59
M SP L SL + ++ +P MG + + + + PR YQ+++ E A
Sbjct: 1 MKSPALQSLSMAGLQLMTPASSPMGPF---FGLPWQQEAIHDNIYTPRKYQVELLEAALD 57
Query: 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAPTVHLVHQQYDVIRVHT 117
NTI L TG+GKT IAV+L K+++ I+ + K K +FL + + V QQ +R H+
Sbjct: 58 HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHS 117
Query: 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDEC 177
D +V EY + + W + W +E +K+ VLVMT + L LR +LSL + +V DEC
Sbjct: 118 DLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYLSLSNINLLVFDEC 177
Query: 178 HHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQV 237
H A +HPY +IMK + P++ G+TAS + G + E +I +LE L S
Sbjct: 178 HLAIQDHPYREIMK-ICEDYPSCPRILGLTAS--ILNGKCDPAELEEKIKKLEKILKSNA 234
Query: 238 FTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWSKFDASLSKLQGSQLNC 295
E T++ V + C CG +D G + D +L L ++
Sbjct: 235 ---ETATDLVVLDRYTSQPCEIVVD---CGPYTDKSGLYGRLLRELDEALHFLNDCNISV 288
Query: 296 YKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351
+ D ++ LSD A ++ +C D++ + E L+K +K ++E E++R
Sbjct: 289 HSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE-----LQKYIKHEQE-ELHR 342
Query: 352 QSSLQCKYFLEEVLHVI 368
+ L FL ++ H +
Sbjct: 343 KFLLFTDTFLRKI-HAL 358
Score = 216 (81.1 bits), Expect = 1.1e-92, Sum P(8) = 1.1e-92
Identities = 50/127 (39%), Positives = 74/127 (58%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV----- 462
T +LC IIFVER A V+ R +K+ P L +++ ++TG + K
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEF 498
Query: 463 --QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
Q+EVL FR + NLL AT ++EEG+ +P C+ V+RFDLP SY+QS+GRAR S
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558
Query: 521 QFILMLE 527
+I++ +
Sbjct: 559 NYIMLAD 565
Score = 206 (77.6 bits), Expect = 1.1e-92, Sum P(8) = 1.1e-92
Identities = 43/91 (47%), Positives = 59/91 (64%)
Query: 1047 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1106
LIL+ALT + F++ERLE+LGDS LK+A++ +LF TYP HEG+LS RS V N
Sbjct: 1301 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1360
Query: 1107 LHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1136
L++LG + L + S FDP W+ PG +
Sbjct: 1361 LYRLGKKKGLPSRMVVSIFDPPVNWLPPGYI 1391
Score = 180 (68.4 bits), Expect = 1.1e-92, Sum P(8) = 1.1e-92
Identities = 45/128 (35%), Positives = 75/128 (58%)
Query: 567 VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA-EEAYECELTLPSNAPFQ-TIVGPTS 624
VT ++++ I+RYC LPSD + P K + + + L LP N+P + +IVGP
Sbjct: 625 VTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLPINSPLRASIVGPPM 684
Query: 625 RNKNLSKQLVCLEACEKLHQV---GALNDHLLP----SVEEPSENNLISKKNESLPGA-G 676
L++++V L CEKLH++ G L+DHL+P +V+ E +L ++ S+PG G
Sbjct: 685 SCARLAERVVALICCEKLHKIEYLGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPG 744
Query: 677 TTKRKELH 684
+TKR++ +
Sbjct: 745 STKRRQCY 752
Score = 113 (44.8 bits), Expect = 1.1e-92, Sum P(8) = 1.1e-92
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350
E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++
Sbjct: 1797 EDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLI 1845
Score = 99 (39.9 bits), Expect = 1.1e-92, Sum P(8) = 1.1e-92
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 920 SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDXXXXXXX 977
+P + +TF Y+ KY + L + QPLL + + + NLL + N
Sbjct: 959 TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1018
Query: 978 XXXXMNTKK---PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1033
K Q + PEL +P S+ + LPS++ RL L+ A +LR +
Sbjct: 1019 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1077
Score = 80 (33.2 bits), Expect = 5.3e-74, Sum P(6) = 5.3e-74
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHE-GQLSARRSWAVCNSTL 1107
+RLE LGD++L Y ++ HL+ P++H G L+ RS A+ N+T+
Sbjct: 1705 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRS-ALVNNTI 1747
Score = 78 (32.5 bits), Expect = 1.1e-92, Sum P(8) = 1.1e-92
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVK 1295
I+ ++ E KI Y F K L +A THAS + + Y+ L+ +L IT+++
Sbjct: 1666 ISGFENFEKKINYSFKNKAYLLQAFTHASYH-YNTITDCYQRLEFLGDAILDYLITKHLY 1724
Query: 1296 SFPK---PGETTD 1305
P+ PG TD
Sbjct: 1725 EDPRQHSPGVLTD 1737
Score = 67 (28.6 bits), Expect = 1.1e-92, Sum P(8) = 1.1e-92
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1178 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1212
+ K+IADC EAL+G Y G AA + LG+
Sbjct: 1557 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGL 1591
Score = 43 (20.2 bits), Expect = 8.6e-80, Sum P(6) = 8.6e-80
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 1277 KHLQHCSTLLLSQITEYVKSFPKPG-ETTDSGPSMKAPK--ALGDL 1319
+H++ ++L+ +VK TTDS KAPK +LG++
Sbjct: 1451 EHIKFIDSMLMGS-GAFVKKISLSHFSTTDSNYEWKAPKKSSLGNV 1495
Score = 37 (18.1 bits), Expect = 4.0e-44, Sum P(3) = 4.0e-44
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 1496 PRTSLFQLCKTMLWPMPTFETT 1517
P T L CKT P TF +T
Sbjct: 645 PFTHLAPKCKTRELPDHTFYST 666
>UNIPROTKB|E9PU15 [details] [associations]
symbol:Dicer1 "Protein Dicer1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 RGD:1309381 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 IPI:IPI00365891
Ensembl:ENSRNOT00000014405 Uniprot:E9PU15
Length = 1908
Score = 351 (128.6 bits), Expect = 5.8e-92, Sum P(8) = 5.8e-92
Identities = 98/333 (29%), Positives = 164/333 (49%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN--GFKKLIIFLAP 101
+ PR YQ+++ E A NTI L TG+GKT IAV+L K++A I+ + K +FL
Sbjct: 32 YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLSPHAKRTVFLVN 91
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ + V QQ +R H+D +V EY + W + W +E K+ VL+MT + L+ L+
Sbjct: 92 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTKHQVLIMTCYVALNVLKN 151
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
+LSL + +V DECH A +HPY +IMK + P++ G+TAS + G +
Sbjct: 152 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCDSCPSCPRILGLTAS--ILNGKCDPDE 208
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
E +I +LE L S E T++ V + C CG +D G E
Sbjct: 209 LEEKIQKLEKILKSGA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 262
Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
+ + +L + ++ + D ++ LSD A ++ +C D++ + E
Sbjct: 263 ELEEALDFINDCNVSVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 318
Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI 368
L+K +K ++E E++R+ L L ++ H +
Sbjct: 319 -LQKYIKHEQE-ELHRKFLLFTDTLLRKI-HAL 348
Score = 218 (81.8 bits), Expect = 5.8e-92, Sum P(8) = 5.8e-92
Identities = 51/128 (39%), Positives = 77/128 (60%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGS--------TTSVDALT 459
T +LC IIFVER A V+ R +K+ P L +++ ++TG + ++A
Sbjct: 429 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEF 488
Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
K Q+EVL FR + NLL AT V+EEG+ +P C+ V+RFDLP SY+QS+GRAR
Sbjct: 489 RK-QEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPI 547
Query: 520 SQFILMLE 527
S ++++ +
Sbjct: 548 SNYVMLAD 555
Score = 214 (80.4 bits), Expect = 5.8e-92, Sum P(8) = 5.8e-92
Identities = 50/123 (40%), Positives = 71/123 (57%)
Query: 1015 PSVMQRLESL--MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDS 1072
P++M +E+L S+ + SR LIL+ALT + F++ERLE+LGDS
Sbjct: 1252 PAMMTAVEALEGRTDSEQSPSVGHSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDS 1311
Query: 1073 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWV 1131
LK+A++ +LF TYP HEG+LS RS V N L++LG + L + S FDP W+
Sbjct: 1312 FLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKQGLPSRMVVSIFDPPVNWL 1371
Query: 1132 APG 1134
PG
Sbjct: 1372 PPG 1374
Score = 187 (70.9 bits), Expect = 5.8e-92, Sum P(8) = 5.8e-92
Identities = 44/128 (34%), Positives = 76/128 (59%)
Query: 564 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVG 621
G VT ++++ I+RYC LPSD + P + + + + L LP N+P + +IVG
Sbjct: 612 GPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVG 671
Query: 622 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPGA-G 676
P L++++V L CEKLH++G L++HL+P +V+ E +L ++ S+PG G
Sbjct: 672 PPMGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPG 731
Query: 677 TTKRKELH 684
+TKR++ +
Sbjct: 732 STKRRQCY 739
Score = 113 (44.8 bits), Expect = 5.8e-92, Sum P(8) = 5.8e-92
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350
E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++
Sbjct: 1780 EDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLI 1828
Score = 99 (39.9 bits), Expect = 5.8e-92, Sum P(8) = 5.8e-92
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 920 SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDXXXXXXX 977
+P + +TF Y+ KY + L + QPLL + + + NLL + N
Sbjct: 945 TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1004
Query: 978 XXXXMNTKK---PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1033
K Q + PEL +P S+ + LPS++ RL L+ A +LR +
Sbjct: 1005 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1063
Score = 80 (33.2 bits), Expect = 8.8e-73, Sum P(6) = 8.8e-73
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHE-GQLSARRSWAVCNSTL 1107
+RLE LGD++L Y ++ HL+ P++H G L+ RS A+ N+T+
Sbjct: 1688 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRS-ALVNNTI 1730
Score = 75 (31.5 bits), Expect = 5.8e-92, Sum P(8) = 5.8e-92
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVK 1295
I+ ++ E KI Y F K L +A THAS + + Y+ L+ +L IT+++
Sbjct: 1649 ISGFENFEKKINYIFKNKAYLLQAFTHASYH-YNTITDCYQRLEFLGDAILDYLITKHLY 1707
Query: 1296 SFPK---PGETTD 1305
P+ PG TD
Sbjct: 1708 EDPRQHSPGVLTD 1720
Score = 67 (28.6 bits), Expect = 5.8e-92, Sum P(8) = 5.8e-92
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1178 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1212
+ K+IADC EAL+G Y G AA + LG+
Sbjct: 1542 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGL 1576
Score = 54 (24.1 bits), Expect = 1.6e-80, Sum P(6) = 1.6e-80
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 1277 KHLQHCSTLLLSQITEYVKSFP-KPGETTDSGPSMKAPK--ALGDL 1319
+H+Q ++L+ +VK P P T+DS K PK +LG +
Sbjct: 1436 EHIQFIDSMLMGS-GAFVKKIPLSPFSTSDSAYEWKMPKKASLGSV 1480
Score = 52 (23.4 bits), Expect = 2.1e-60, Sum P(8) = 2.1e-60
Identities = 33/149 (22%), Positives = 68/149 (45%)
Query: 266 CG--SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
CG +D G E + + +L + ++ + D ++ LSD A ++
Sbjct: 247 CGPFTDRSGLYERLLMELEEALDFINDCNVSVHSKERDSTLISKQILSDCRAVLVV---- 302
Query: 324 LGLICAYEAVKIC---LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
LG CA + + L+K +K ++E E++R+ L F + +L I + L ++ F
Sbjct: 303 LGPWCADKVAGMMVRELQKYIKHEQE-ELHRKFLL----FTDTLLRKIHA---LCEEYFS 354
Query: 381 DFGFDYSKAVDLGYISTKLHELLQLFLSF 409
++DL Y++ K+ +LL++ +
Sbjct: 355 P------ASLDLKYVTPKVMKLLEILRKY 377
Score = 50 (22.7 bits), Expect = 4.0e-80, Sum P(6) = 4.0e-80
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 1437 GKLGDDCRQTTKEDL 1451
GKLG+DC + +E+L
Sbjct: 1401 GKLGEDCEEEEEEEL 1415
>UNIPROTKB|B3DLA6 [details] [associations]
symbol:dicer1 "Endoribonuclease Dicer" species:8364
"Xenopus (Silurana) tropicalis" [GO:0016442 "RNA-induced silencing
complex" evidence=ISS] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EU338242 EMBL:BC167373 RefSeq:NP_001123390.2
UniGene:Str.39540 STRING:B3DLA6 GeneID:100170154 KEGG:xtr:100170154
Xenbase:XB-GENE-491114 Uniprot:B3DLA6
Length = 1893
Score = 344 (126.2 bits), Expect = 1.0e-90, Sum P(9) = 1.0e-90
Identities = 101/333 (30%), Positives = 161/333 (48%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK--KLIIFLAP 101
+ PR YQ+++ E A NTI L +G+GKT IAV+L K+++ I+ + K K +FL
Sbjct: 32 YTPRKYQVELLEAALDHNTIVCLNSGSGKTFIAVLLSKELSYQIRGDFSKNTKRTVFLVN 91
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ V QQ +R HTD +V EY + W + W E + VLVMT I L+ L+
Sbjct: 92 SEKQVSQQVSAVRTHTDLKVGEYSDQEKTQCWAKERWYLEFETHQVLVMTCHIFLNVLKS 151
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
+SL + +V DECH A +HPY +IMK P++ G+TAS + G D
Sbjct: 152 GNVSLSNINLLVFDECHLAIQDHPYREIMK-ICESCQPCPRILGLTAS--ILNGKCDPRD 208
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVSWS 279
E +I +LE L S E T++ V A + C CG D G + +
Sbjct: 209 LEEKIQKLEEILRSNA---ETATDLVVLDRYASQPCEIVLD---CGPYIDKSGLYQRLLN 262
Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
+ D +L+ L ++ + D ++ LSD +L +C D++ + E
Sbjct: 263 ELDEALNFLIDCNISTHSKERDSTLISKQILSDCQTVLLVLGPWCADKVAGMMVRE---- 318
Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI 368
L+K +K ++E E++R+ L L ++ H +
Sbjct: 319 -LQKYIKHEQE-ELHRKFLLFTDTILRKI-HAL 348
Score = 217 (81.4 bits), Expect = 1.0e-90, Sum P(9) = 1.0e-90
Identities = 50/127 (39%), Positives = 74/127 (58%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV----- 462
T +LC IIFVER A V+ R +K+ P L +++ ++TG + K
Sbjct: 430 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEF 489
Query: 463 --QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
Q+EVL FR + NLL AT ++EEG+ +P C+ V+RFDLP SY+QS+GRAR S
Sbjct: 490 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKGRARAPIS 549
Query: 521 QFILMLE 527
+I++ +
Sbjct: 550 NYIMLAD 556
Score = 204 (76.9 bits), Expect = 1.0e-90, Sum P(9) = 1.0e-90
Identities = 46/104 (44%), Positives = 63/104 (60%)
Query: 1035 NCHSRNFHIPS-SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQ 1093
N HS P+ LIL+ALT + F++ERLE+LGDS LK+A++ +LF TYP HEG+
Sbjct: 1260 NRHSSKTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGR 1319
Query: 1094 LSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPGQL 1136
LS RS V N L++LG + + S FDP W+ PG +
Sbjct: 1320 LSYMRSKKVSNCNLYRLGKKKGSPSRMVVSIFDPPVNWLPPGYI 1363
Score = 191 (72.3 bits), Expect = 1.0e-90, Sum P(9) = 1.0e-90
Identities = 47/136 (34%), Positives = 76/136 (55%)
Query: 558 YIVESTGAS--VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNA 614
Y++ S VT ++++ I+RYC LPSD + P K + + Y L LP N+
Sbjct: 605 YVLRQDDGSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTREFPDGLYRSTLYLPINS 664
Query: 615 PFQT-IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKN 669
P + IVGP L+ + V L C+KLH++G L+DHL+P +V+ E +L ++
Sbjct: 665 PLRAPIVGPPMNCGRLADRAVALICCKKLHEIGELDDHLMPVGKETVKYEEELDLHDEEE 724
Query: 670 ESLPGA-GTTKRKELH 684
S+PG G+TKR++ +
Sbjct: 725 TSVPGRPGSTKRRQCY 740
Score = 114 (45.2 bits), Expect = 1.0e-90, Sum P(9) = 1.0e-90
Identities = 16/49 (32%), Positives = 34/49 (69%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350
E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW ++ P++ P++
Sbjct: 1765 EDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLI 1813
Score = 100 (40.3 bits), Expect = 1.0e-90, Sum P(9) = 1.0e-90
Identities = 32/119 (26%), Positives = 50/119 (42%)
Query: 920 SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDXXXXXXX 977
+P + +TF Y+ KY + L + QPLL + + + NLL + N
Sbjct: 949 TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1008
Query: 978 XXXXMNTKK---PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1033
K Q + PEL VP S+ + LPS++ RL L+ A +LR +
Sbjct: 1009 SSAEKRKAKWESLQNKQILVPELCAIHPVPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1067
Score = 80 (33.2 bits), Expect = 1.0e-71, Sum P(7) = 1.0e-71
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHE-GQLSARRSWAVCNSTL 1107
+RLE LGD++L Y ++ HL+ P++H G L+ RS A+ N+T+
Sbjct: 1673 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRS-ALVNNTI 1715
Score = 77 (32.2 bits), Expect = 1.0e-90, Sum P(9) = 1.0e-90
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVK 1295
I+ ++ E KI Y F K L +A THAS + + Y+ L+ +L IT+++
Sbjct: 1634 ISGFENFEKKINYPFKNKAYLLQAFTHASYH-YNTITDCYQRLEFLGDAILDYLITKHLY 1692
Query: 1296 SFPK---PGETTD 1305
P+ PG TD
Sbjct: 1693 EDPRQHSPGVLTD 1705
Score = 70 (29.7 bits), Expect = 1.0e-90, Sum P(9) = 1.0e-90
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 1178 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEV-SLVDDCITRASLRSY 1233
+ K+IADC EAL+G Y G AA + LG+ EV LV + ++ SY
Sbjct: 1528 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPEVRKLVTNTNVISASSSY 1584
Score = 39 (18.8 bits), Expect = 2.0e-60, Sum P(6) = 2.0e-60
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 1539 SFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1572
S SK + +VE D R +K ++ DSAA
Sbjct: 1095 SIDSKTFISNQSSSSVESESDCRLNKTTAPDSAA 1128
Score = 39 (18.8 bits), Expect = 1.8e-53, Sum P(6) = 1.8e-53
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 1087 PKKHEGQLSARRSWAVCNSTLHKLG 1111
P + G+L+ R +C LH++G
Sbjct: 673 PPMNCGRLADRAVALICCKKLHEIG 697
Score = 38 (18.4 bits), Expect = 1.0e-90, Sum P(9) = 1.0e-90
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 812 YLLLPLEIVNTFG 824
Y +LPL +VN G
Sbjct: 867 YCVLPLNVVNDSG 879
>UNIPROTKB|F1MCQ5 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00715122 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:DAAA02053090
Ensembl:ENSBTAT00000017080 ArrayExpress:F1MCQ5 Uniprot:F1MCQ5
Length = 1920
Score = 361 (132.1 bits), Expect = 1.5e-85, Sum P(7) = 1.5e-85
Identities = 100/333 (30%), Positives = 166/333 (49%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
+ PR YQ+++ E A NTI L TG+GKT IAV+L K+++ I+ N K +FL
Sbjct: 42 YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 101
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ + V QQ +R H+D +V EY + W + W +E K+ VLVMT + L+ L+
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLVMTCYVALNVLKN 161
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
+LSL + +V DECH A +HPY +IMK + P++ G+TAS + G +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
E +I +LE L S E T++ V + C CG +D G E
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272
Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
+ + +L+ + ++ + D ++ LSD A ++ +C D++ + E
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328
Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI 368
L+K +K ++E E++R+ L FL ++ H +
Sbjct: 329 -LQKHIKHEQE-ELHRKFLLFTDTFLRKI-HAL 358
Score = 216 (81.1 bits), Expect = 1.5e-85, Sum P(7) = 1.5e-85
Identities = 50/128 (39%), Positives = 76/128 (59%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGS--------TTSVDALT 459
T +LC IIFVER A V+ R +K+ P L +++ ++TG ++A
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEF 498
Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
K Q+EVL FR + NLL AT ++EEG+ +P C+ V+RFDLP SY+QS+GRAR
Sbjct: 499 RK-QEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPI 557
Query: 520 SQFILMLE 527
S ++++ +
Sbjct: 558 SNYVMLAD 565
Score = 192 (72.6 bits), Expect = 1.5e-85, Sum P(7) = 1.5e-85
Identities = 50/154 (32%), Positives = 86/154 (55%)
Query: 558 YIVE-STGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAP 615
Y++ G VT ++++ ++RYC LPSD + P + + + + L LP N+P
Sbjct: 614 YVLRPEDGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSP 673
Query: 616 FQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNE 670
+ +IVGP L++++V L CEKLH++G L+DHL+P +V+ E +L ++
Sbjct: 674 LRASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEET 733
Query: 671 SLPGA-GTTKRKELHGTT-P--IRALSGRWGEKC 700
S+PG G+TKR++ + P +R R G+ C
Sbjct: 734 SVPGRPGSTKRRQCYPKAIPECLRESYPRPGQPC 767
Score = 157 (60.3 bits), Expect = 1.5e-85, Sum P(7) = 1.5e-85
Identities = 43/101 (42%), Positives = 56/101 (55%)
Query: 1038 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAV---SCHLFLTYPKKHEGQL 1094
SR LIL+ALT + F++ERLE+LGDS LK+A+ S L L HEG+L
Sbjct: 1287 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTISSALIL-----HEGRL 1341
Query: 1095 SARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1134
S RS V N L++LG + L + S FDP W+ PG
Sbjct: 1342 SYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1382
Score = 114 (45.2 bits), Expect = 1.5e-85, Sum P(7) = 1.5e-85
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350
E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++
Sbjct: 1792 EDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLI 1840
Score = 99 (39.9 bits), Expect = 1.5e-85, Sum P(7) = 1.5e-85
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 920 SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDXXXXXXX 977
+P + +TF Y+ KY + L + QPLL + + + NLL + N
Sbjct: 954 TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1013
Query: 978 XXXXMNTKK---PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1033
K Q + PEL +P S+ + LPS++ RL L+ A +LR +
Sbjct: 1014 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1072
Score = 80 (33.2 bits), Expect = 2.9e-74, Sum P(6) = 2.9e-74
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHE-GQLSARRSWAVCNSTL 1107
+RLE LGD++L Y ++ HL+ P++H G L+ RS A+ N+T+
Sbjct: 1700 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRS-ALVNNTI 1742
Score = 78 (32.5 bits), Expect = 1.5e-85, Sum P(7) = 1.5e-85
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVK 1295
I+ ++ E KI Y F K L +A THAS + + Y+ L+ +L IT+++
Sbjct: 1661 ISGFENFEKKINYRFKNKAYLLQAFTHASYH-YNTITDCYQRLEFLGDAILDYLITKHLY 1719
Query: 1296 SFPK---PGETTD 1305
P+ PG TD
Sbjct: 1720 EDPRQHSPGVLTD 1732
Score = 76 (31.8 bits), Expect = 2.4e-85, Sum P(7) = 2.4e-85
Identities = 24/80 (30%), Positives = 35/80 (43%)
Query: 1178 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDD----CITRASLRSY 1233
+ K+IADC EAL+G Y G AA + LG+ + D C TR + S
Sbjct: 1552 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKAMCPTRENFTSQ 1611
Query: 1234 VPRINEIKDIESKIGYEFTV 1253
++ + S GY +V
Sbjct: 1612 QKNLSGSRAAASGAGYRASV 1631
Score = 43 (20.2 bits), Expect = 6.9e-75, Sum P(6) = 6.9e-75
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 1277 KHLQHCSTLLLSQITEYVKSFP-KPGETTDSGPSMKAPK--ALGDL 1319
+H++ +L+ +VK P TDS K PK +LG L
Sbjct: 1446 EHIKFIDNMLMGS-GAFVKKISLSPFSATDSAYEWKMPKKSSLGSL 1490
Score = 37 (18.1 bits), Expect = 9.7e-70, Sum P(6) = 9.7e-70
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 1262 THASVQEFYCYQNLYKHLQHCSTL 1285
T +Q Y Y+N K C+ L
Sbjct: 1215 TSYPIQNLYNYENQPKPSDECTLL 1238
Score = 37 (18.1 bits), Expect = 4.7e-43, Sum P(3) = 4.7e-43
Identities = 25/101 (24%), Positives = 35/101 (34%)
Query: 1419 LKKLEVCEKRISKGASNTGKLGD-DCRQTTKEDLPEPPSCKR-QKGTEAAIPAGDSCKKA 1476
LK + EK + S + G+ D +D PP R + G I
Sbjct: 576 LKTYKAIEKILRNKCSKSVDTGEADTEPVVDDDDVFPPYVLRPEDGPRVTINTAIGHVNR 635
Query: 1477 YCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETT 1517
YC + P + P T L C+T P TF +T
Sbjct: 636 YCARL------PSD-----PFTHLAPKCRTRELPDGTFYST 665
>UNIPROTKB|Q6TUI4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0016442 "RNA-induced
silencing complex" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HSSP:P66666 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AY386968 IPI:IPI00715122
RefSeq:NP_976235.1 UniGene:Bt.45343 UniGene:Bt.89150
ProteinModelPortal:Q6TUI4 SMR:Q6TUI4 STRING:Q6TUI4 PRIDE:Q6TUI4
GeneID:337871 KEGG:bta:337871 CTD:23405 HOGENOM:HOG000001567
NextBio:20812451 Uniprot:Q6TUI4
Length = 1923
Score = 360 (131.8 bits), Expect = 1.3e-84, Sum P(7) = 1.3e-84
Identities = 99/333 (29%), Positives = 166/333 (49%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
+ PR YQ+++ E A NTI L TG+GKT IAV+L K+++ I+ N K +FL
Sbjct: 42 YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 101
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ + V QQ +R H+D +V EY + W + W +E K+ VL+MT + L+ L+
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLIMTCYVALNVLKN 161
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
+LSL + +V DECH A +HPY +IMK + P++ G+TAS + G +
Sbjct: 162 GYLSLSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
E +I +LE L S E T++ V + C CG +D G E
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272
Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
+ + +L+ + ++ + D ++ LSD A ++ +C D++ + E
Sbjct: 273 ELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328
Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI 368
L+K +K ++E E++R+ L FL ++ H +
Sbjct: 329 -LQKHIKHEQE-ELHRKFLLFTDTFLRKI-HAL 358
Score = 216 (81.1 bits), Expect = 1.3e-84, Sum P(7) = 1.3e-84
Identities = 50/128 (39%), Positives = 76/128 (59%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGS--------TTSVDALT 459
T +LC IIFVER A V+ R +K+ P L +++ ++TG ++A
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEF 498
Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
K Q+EVL FR + NLL AT ++EEG+ +P C+ V+RFDLP SY+QS+GRAR
Sbjct: 499 RK-QEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPI 557
Query: 520 SQFILMLE 527
S ++++ +
Sbjct: 558 SNYVMLAD 565
Score = 192 (72.6 bits), Expect = 1.3e-84, Sum P(7) = 1.3e-84
Identities = 50/154 (32%), Positives = 86/154 (55%)
Query: 558 YIVE-STGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAP 615
Y++ G VT ++++ ++RYC LPSD + P + + + + L LP N+P
Sbjct: 614 YVLRPEDGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSP 673
Query: 616 FQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNE 670
+ +IVGP L++++V L CEKLH++G L+DHL+P +V+ E +L ++
Sbjct: 674 LRASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEET 733
Query: 671 SLPGA-GTTKRKELHGTT-P--IRALSGRWGEKC 700
S+PG G+TKR++ + P +R R G+ C
Sbjct: 734 SVPGRPGSTKRRQCYPKAIPECLRESYPRPGQPC 767
Score = 149 (57.5 bits), Expect = 1.3e-84, Sum P(7) = 1.3e-84
Identities = 38/91 (41%), Positives = 51/91 (56%)
Query: 1038 SRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSC-HLFLTYPKKHEGQLSA 1096
SR LIL+ALT + F++ERLE+LGDS LK+A++ L HEG+LS
Sbjct: 1287 SRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSY 1346
Query: 1097 RRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1127
RS V N L++LG + L + S FDP
Sbjct: 1347 MRSKKVSNCNLYRLGKKKGLPSRMVVSIFDP 1377
Score = 114 (45.2 bits), Expect = 1.3e-84, Sum P(7) = 1.3e-84
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350
E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++
Sbjct: 1795 EDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLI 1843
Score = 99 (39.9 bits), Expect = 1.3e-84, Sum P(7) = 1.3e-84
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 920 SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDXXXXXXX 977
+P + +TF Y+ KY + L + QPLL + + + NLL + N
Sbjct: 954 TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1013
Query: 978 XXXXMNTKK---PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1033
K Q + PEL +P S+ + LPS++ RL L+ A +LR +
Sbjct: 1014 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1072
Score = 80 (33.2 bits), Expect = 3.8e-74, Sum P(6) = 3.8e-74
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHE-GQLSARRSWAVCNSTL 1107
+RLE LGD++L Y ++ HL+ P++H G L+ RS A+ N+T+
Sbjct: 1703 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRS-ALVNNTI 1745
Score = 78 (32.5 bits), Expect = 1.3e-84, Sum P(7) = 1.3e-84
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVK 1295
I+ ++ E KI Y F K L +A THAS + + Y+ L+ +L IT+++
Sbjct: 1664 ISGFENFEKKINYRFKNKAYLLQAFTHASYH-YNTITDCYQRLEFLGDAILDYLITKHLY 1722
Query: 1296 SFPK---PGETTD 1305
P+ PG TD
Sbjct: 1723 EDPRQHSPGVLTD 1735
Score = 76 (31.8 bits), Expect = 2.1e-84, Sum P(7) = 2.1e-84
Identities = 24/80 (30%), Positives = 35/80 (43%)
Query: 1178 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDD----CITRASLRSY 1233
+ K+IADC EAL+G Y G AA + LG+ + D C TR + S
Sbjct: 1555 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKAMCPTRENFTSQ 1614
Query: 1234 VPRINEIKDIESKIGYEFTV 1253
++ + S GY +V
Sbjct: 1615 QKNLSGSRAAASGAGYRASV 1634
Score = 43 (20.2 bits), Expect = 6.1e-74, Sum P(6) = 6.1e-74
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 1277 KHLQHCSTLLLSQITEYVKSFP-KPGETTDSGPSMKAPK--ALGDL 1319
+H++ +L+ +VK P TDS K PK +LG L
Sbjct: 1449 EHIKFIDNMLMGS-GAFVKKISLSPFSATDSAYEWKMPKKSSLGSL 1493
Score = 37 (18.1 bits), Expect = 1.3e-69, Sum P(6) = 1.3e-69
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 1262 THASVQEFYCYQNLYKHLQHCSTL 1285
T +Q Y Y+N K C+ L
Sbjct: 1215 TSYPIQNLYNYENQPKPSDECTLL 1238
Score = 37 (18.1 bits), Expect = 6.1e-43, Sum P(3) = 6.1e-43
Identities = 25/101 (24%), Positives = 35/101 (34%)
Query: 1419 LKKLEVCEKRISKGASNTGKLGD-DCRQTTKEDLPEPPSCKR-QKGTEAAIPAGDSCKKA 1476
LK + EK + S + G+ D +D PP R + G I
Sbjct: 576 LKTYKAIEKILRNKCSKSVDTGEADTEPVVDDDDVFPPYVLRPEDGPRVTINTAIGHVNR 635
Query: 1477 YCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETT 1517
YC + P + P T L C+T P TF +T
Sbjct: 636 YCARL------PSD-----PFTHLAPKCRTRELPDGTFYST 665
>UNIPROTKB|I3L6Y9 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
OMA:FLEYDQE GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:CU915626
Ensembl:ENSSSCT00000022914 Uniprot:I3L6Y9
Length = 1565
Score = 362 (132.5 bits), Expect = 3.9e-82, Sum P(6) = 3.9e-82
Identities = 108/359 (30%), Positives = 174/359 (48%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS--NGFKKLIIFLAP 101
+ PR YQ+++ E A NTI L TG+GKT IAV+L K+++ I+ N K +FL
Sbjct: 42 YTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVN 101
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ + V QQ +R H+D +V EY + W + W +E K+ VLVMT + L+ L+
Sbjct: 102 SANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKEKWNQEFTKHQVLVMTCSVALNVLKN 161
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD 221
+L+L + +V DECH A +HPY +IMK + P++ G+TAS + G +
Sbjct: 162 GYLALSDINLLVFDECHLAILDHPYREIMK-LCENCPSCPRILGLTAS--ILNGKCDPEE 218
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGKLEVSWS 279
E +I +LE L S E T++ V + C CG +D G E
Sbjct: 219 LEEKIQKLEKILKSNA---ETATDLVVLDRYTSQPCEIVVD---CGPFTDRSGLYERLLM 272
Query: 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL----YCLDELGLICAYEAVKI 335
+ + +L+ + + + D ++ LSD A ++ +C D++ + E
Sbjct: 273 ELEEALNFINDCNIAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRE---- 328
Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI--GSALPLADKIFLDFGFDYSKAVDL 392
L+K +K ++E E++R+ L FL +V H + G P A LD F K + L
Sbjct: 329 -LQKYIKHEQE-ELHRKFLLFTDTFLRKV-HALCEGHFSPAA----LDLRFVTPKVIKL 380
Score = 216 (81.1 bits), Expect = 3.9e-82, Sum P(6) = 3.9e-82
Identities = 50/128 (39%), Positives = 76/128 (59%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGS--------TTSVDALT 459
T +LC IIFVER A V+ R +K+ P L +++ ++TG ++A
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEF 498
Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
K Q+EVL FR + NLL AT ++EEG+ +P C+ V+RFDLP SY+QS+GRAR
Sbjct: 499 RK-QEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPI 557
Query: 520 SQFILMLE 527
S ++++ +
Sbjct: 558 SNYVMLAD 565
Score = 205 (77.2 bits), Expect = 3.9e-82, Sum P(6) = 3.9e-82
Identities = 43/89 (48%), Positives = 58/89 (65%)
Query: 1047 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1106
LIL+ALT + F++ERLE+LGDS LK+A++ +LF TYP HEG+LS RS V N
Sbjct: 1293 LILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCN 1352
Query: 1107 LHKLGTDRKLQGYIRDSAFDPR-RWVAPG 1134
L++LG + L + S FDP W+ PG
Sbjct: 1353 LYRLGKKKGLPSRMVVSIFDPPVNWLPPG 1381
Score = 191 (72.3 bits), Expect = 3.9e-82, Sum P(6) = 3.9e-82
Identities = 45/128 (35%), Positives = 76/128 (59%)
Query: 564 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ-TIVG 621
G VT ++++ I+RYC LPSD + P + + + + L LP N+P + +IVG
Sbjct: 622 GPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVG 681
Query: 622 PTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPGA-G 676
P L++++V L CEKLH++G L+DHL+P +V+ E +L ++ S+PG G
Sbjct: 682 PPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPG 741
Query: 677 TTKRKELH 684
+TKR++ +
Sbjct: 742 STKRRQCY 749
Score = 99 (39.9 bits), Expect = 3.9e-82, Sum P(6) = 3.9e-82
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 920 SPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV--NFNDXXXXXXX 977
+P + +TF Y+ KY + L + QPLL + + + NLL + N
Sbjct: 955 TPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1014
Query: 978 XXXXMNTKK---PQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREE 1033
K Q + PEL +P S+ + LPS++ RL L+ A +LR +
Sbjct: 1015 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ 1073
Score = 58 (25.5 bits), Expect = 3.9e-82, Sum P(6) = 3.9e-82
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 1178 MGSKTIADCAEALIGAY 1194
+ K+IADC EAL+G Y
Sbjct: 1549 IADKSIADCVEALLGCY 1565
Score = 49 (22.3 bits), Expect = 5.4e-49, Sum P(6) = 5.4e-49
Identities = 33/149 (22%), Positives = 65/149 (43%)
Query: 266 CG--SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
CG +D G E + + +L+ + + + D ++ LSD A ++
Sbjct: 257 CGPFTDRSGLYERLLMELEEALNFINDCNIAVHSKERDSTLISKQILSDCRAVLVV---- 312
Query: 324 LGLICAYEAVKIC---LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL 380
LG CA + + L+K +K ++E E++R+ L FL +V H +
Sbjct: 313 LGPWCADKVAGMMVRELQKYIKHEQE-ELHRKFLLFTDTFLRKV-HALCE---------- 360
Query: 381 DFGFDYSKAVDLGYISTKLHELLQLFLSF 409
G A+DL +++ K+ +LL++ +
Sbjct: 361 --GHFSPAALDLRFVTPKVIKLLEILRKY 387
>WB|WBGene00000939 [details] [associations]
symbol:dcr-1 species:6239 "Caenorhabditis elegans"
[GO:0004525 "ribonuclease III activity" evidence=IEA;IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016891
"endoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0040010 "positive regulation
of growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006952 "defense response" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010467 "gene expression"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0045132
"meiotic chromosome segregation" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IMP] [GO:0040034 "regulation of development,
heterochronic" evidence=IMP] [GO:0031050 "dsRNA fragmentation"
evidence=IDA] [GO:0035262 "gonad morphogenesis" evidence=IMP]
[GO:0004530 "deoxyribonuclease I activity" evidence=IDA]
[GO:0000737 "DNA catabolic process, endonucleolytic" evidence=IDA]
[GO:0006401 "RNA catabolic process" evidence=IDA] [GO:0006309
"apoptotic DNA fragmentation" evidence=IGI] [GO:0031054 "pre-miRNA
processing" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005829 GO:GO:0005524 GO:GO:0002009
GO:GO:0018991 GO:GO:0040010 GO:GO:0006952 GO:GO:0002119
GO:GO:0046872 GO:GO:0040011 GO:GO:0006401 GO:GO:0040035
GO:GO:0003725 GO:GO:0045132 SUPFAM:SSF101690 GO:GO:0031054
GO:GO:0030422 GO:GO:0040034 GO:GO:0006309 GO:GO:0016075
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:FO081380
GO:GO:0008026 GO:GO:0035262 eggNOG:COG1111 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PIR:S44849 RefSeq:NP_498761.2
DIP:DIP-25340N IntAct:P34529 MINT:MINT-1040079 STRING:P34529
PaxDb:P34529 EnsemblMetazoa:K12H4.8 GeneID:176138
KEGG:cel:CELE_K12H4.8 UCSC:K12H4.8 CTD:42693 WormBase:K12H4.8
GeneTree:ENSGT00510000046789 HOGENOM:HOG000022395 InParanoid:P34529
NextBio:891290 GO:GO:0004530 Uniprot:P34529
Length = 1910
Score = 480 (174.0 bits), Expect = 1.5e-73, Sum P(6) = 1.5e-73
Identities = 156/521 (29%), Positives = 264/521 (50%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKS---NGFKKLIIFLA 100
F PR YQ+++ + A ++NTI L TG+GKT IAV+L+K+ + + G K+ F+
Sbjct: 11 FNPRDYQVELLDKATKKNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQGGKRAF-FVV 69
Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS--QCWQKEINKNDVLVMTPQILLDA 158
V+LV QQ I VHT F+V + +G WDS QC Q + ++ V+V+T Q LLD
Sbjct: 70 EKVNLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQF-MKRHHVVVITAQCLLDL 128
Query: 159 LRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEF-YHKSDNK-PKVFGMTASPVVRKG 215
+R A+L ++ +C ++ DECHHA G+ HPY IM ++ K D P+V G+TAS +++
Sbjct: 129 IRHAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDYKLLKKDKPVPRVLGLTAS-LIKAK 187
Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKES---CRFYDQSKFCGSDLKG 272
V+ E Q+ +LES +DS + T D + + E C+ ++ +
Sbjct: 188 VAPEKLME-QLKKLESAMDSVIETASDLVSLSKYGAKPYEVVIICKDFEIGCLGIPNFDT 246
Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMD-DKHKTLRKQLSDYHAKILYCLDELGLICAYE 331
+E+ FD +++ + + + D+D D + ++ L A +LG A+
Sbjct: 247 VIEI----FDETVAFVN-TTTEFHPDLDLDPRRPIKDSLKTTRA----VFRQLGPWAAWR 297
Query: 332 AVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL-PLADKI-FLDFGFDY--S 387
++ EK L + ++ +L+ + + I L P KI ++ Y
Sbjct: 298 TAQVW-EKELGKIIKSQVLPDKTLRFLNMAKTSMITIKRLLEPEMKKIKSIEALRPYVPQ 356
Query: 388 KAVDLGYISTKLH-ELLQLFLSFGKSTQVLCIIFVE-RIIAAKVV--ERFVKK-VPFLTH 442
+ + L I + E + + K+ + IIFV+ R IA ++ R +K P
Sbjct: 357 RVIRLFEILETFNPEFQKERMKLEKAEHLSAIIFVDQRYIAYSLLLMMRHIKSWEPKFKF 416
Query: 443 LTVAYLTGST----TSVDAL-TPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
+ Y+ G++ S D+ K Q EVL F ++N L AT V+EEG+ V C+ VI
Sbjct: 417 VNPDYVVGASGRNLASSDSQGLHKRQTEVLRRFHRNEINCLIATSVLEEGVDVKQCNLVI 476
Query: 498 RFDLPKTVSSYIQSRGRARQHNSQFILMLERSERSVTDTAL 538
+FD P + SY+QS+GRAR+ S++++ +E + + D+ L
Sbjct: 477 KFDRPLDMRSYVQSKGRARRAGSRYVITVEEKDTAACDSDL 517
Score = 190 (71.9 bits), Expect = 1.5e-73, Sum P(6) = 1.5e-73
Identities = 57/150 (38%), Positives = 81/150 (54%)
Query: 558 YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE----AYECELTLPSN 613
Y+VE TGA++ +++ LI+RYC LPSD + P + EE Y EL LP N
Sbjct: 557 YVVEKTGATLKMSTAIALINRYCSKLPSDIFTRLVPHNQIIPIEENGVTKYCAELLLPIN 616
Query: 614 APFQ-TIV--GPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNL--ISKK 668
+P + IV P NK ++ V LEAC +LH G L+D+LLP E L I ++
Sbjct: 617 SPIKHAIVLKNPMP-NKKTAQMAVALEACRQLHLEGELDDNLLPKGRESIAKLLEHIDEE 675
Query: 669 -NESLPG----AGTTKRKELHGTTPIRALS 693
+E PG G++KRK+L+ RAL+
Sbjct: 676 PDEYAPGIAAKVGSSKRKQLYDKKIARALN 705
Score = 151 (58.2 bits), Expect = 1.5e-73, Sum P(6) = 1.5e-73
Identities = 35/88 (39%), Positives = 50/88 (56%)
Query: 1047 LILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1106
L+L ALTT + S+ER E +GDS LK+A + +L+ T +HEG+LS RS V N
Sbjct: 1396 LLLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCN 1455
Query: 1107 LHKLGTDRKLQGYIRDSAFDPR-RWVAP 1133
L++LG + I + FD W+ P
Sbjct: 1456 LYRLGKKLGIPQLIVANKFDAHDSWLPP 1483
Score = 109 (43.4 bits), Expect = 1.5e-73, Sum P(6) = 1.5e-73
Identities = 43/174 (24%), Positives = 76/174 (43%)
Query: 1173 MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRS 1232
+G+R+ K A +A A Y+ + +++LG DA L+ ++ + S R
Sbjct: 1650 IGYRF---KERAYLVQAFTHASYINNRVTGCYQRLEFLG-DAVLDY-MITRYLFEDS-RQ 1703
Query: 1233 YVPRI-NEIKD--IESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ 1289
Y P + +++ + + I VKF Q+ H Y + K ++ CS
Sbjct: 1704 YSPGVLTDLRSALVNNTIFASLAVKFEFQK---HFIAMCPGLYHMIEKFVKLCSERNFDT 1760
Query: 1290 ITEYVKSFPKPGETTDSGPS--MKAPKALGDLLESIVGAVLIDTKLNLDEVWRI 1341
E D G ++ PKA+GD+ ES+ GA+ +D+ NLD W++
Sbjct: 1761 NFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQV 1814
Score = 107 (42.7 bits), Expect = 2.3e-73, Sum P(6) = 2.3e-73
Identities = 55/213 (25%), Positives = 87/213 (40%)
Query: 1113 DRKLQGY-IRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPC 1171
+R L G I + + W G +S G++T+ P + D +
Sbjct: 1507 ERILDGQVIEEKPENKTGWDIGGDVSKSTTD---GIETITFPKQARVGNDDISPLPYNLL 1563
Query: 1172 DMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGID-------ADLEVSLVDDC 1224
H + K+IAD EALIG + + G L +M W+G+ +D+ L+
Sbjct: 1564 TQQH--ISDKSIADAVEALIGVHLLTLGPNPTLKVMNWMGLKVIQKDQKSDVPSPLLRFI 1621
Query: 1225 ITRASLRSYVPRINEI------KDIESKIGYEFTVKFLLQEAITHASV---QEFYCYQNL 1275
T + + + +N + +E KIGY F + L +A THAS + CYQ L
Sbjct: 1622 DTPTNPNASLNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRL 1681
Query: 1276 YKHLQHCSTLLLSQITEYVKSFPK---PGETTD 1305
+ L +L IT Y+ + PG TD
Sbjct: 1682 -EFLG--DAVLDYMITRYLFEDSRQYSPGVLTD 1711
Score = 85 (35.0 bits), Expect = 5.1e-59, Sum P(4) = 5.1e-59
Identities = 34/117 (29%), Positives = 57/117 (48%)
Query: 993 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQL--REEINCHSRNFHIPSSLILE 1050
+P LL +D P + SL L ++ Q+ + L ++ R + + +S I
Sbjct: 1613 VPSPLLRFIDTPTNPNASLNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINN 1672
Query: 1051 ALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1107
+T GC +RLE LGD+VL Y ++ +LF + G L+ RS A+ N+T+
Sbjct: 1673 RVT--GC-----YQRLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRS-ALVNNTI 1721
Score = 59 (25.8 bits), Expect = 1.5e-73, Sum P(6) = 1.5e-73
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 983 NTKKPQMHVH--MPPELLVRVDV-PISVV--KSLYLLPSVMQRLESLMLASQLREEI 1034
NT P + PEL+ D+ PIS + LPS+ R+ L+L +LRE I
Sbjct: 982 NTSVPHSSQRQILVPELM---DIHPISATLWNVIAALPSIFYRVNQLLLTDELRETI 1035
Score = 59 (25.8 bits), Expect = 1.5e-73, Sum P(6) = 1.5e-73
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 889 DAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 944
+A++ KD +V+ + Y + EI+ S F D +TF YF +KY +
Sbjct: 871 NAEDYKDAIVMPWYRNLEQPVFYYVAEILPEWRPSSKFP---DTHFETFNEYFIKKYKLE 927
Query: 945 LIHPGQPLLRLKQSHNPHNLL 965
+ Q LL + + NLL
Sbjct: 928 IYDQNQSLLDVDFTSTRLNLL 948
Score = 43 (20.2 bits), Expect = 2.4e-58, Sum P(6) = 2.4e-58
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 612 SNAPFQTIVGPTSRNKN 628
SNAP T++ P ++ K+
Sbjct: 819 SNAPLNTLIVPLNKRKD 835
Score = 37 (18.1 bits), Expect = 3.9e-53, Sum P(3) = 3.9e-53
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 901 IHTGRIYSIVEIVNN 915
+ +G++ VE+VNN
Sbjct: 1855 LESGKVRVTVEVVNN 1869
Score = 37 (18.1 bits), Expect = 4.0e-12, Sum P(6) = 4.0e-12
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 558 YIVESTGASVTTDSSVNLIHRYCEML 583
Y+V ++G ++ + S L R E+L
Sbjct: 421 YVVGASGRNLASSDSQGLHKRQTEVL 446
>FB|FBgn0034246 [details] [associations]
symbol:Dcr-2 "Dicer-2" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS;NAS] [GO:0003725
"double-stranded RNA binding" evidence=IEA;ISS;NAS] [GO:0016246
"RNA interference" evidence=IMP;NAS;IDA;TAS] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IMP;IDA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0035087 "siRNA
loading onto RISC involved in RNA interference" evidence=IMP]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006342 "chromatin
silencing" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0006379 "mRNA cleavage" evidence=IMP] [GO:0009597 "detection of
virus" evidence=IMP] [GO:0016442 "RNA-induced silencing complex"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0007626 "locomotory
behavior" evidence=IMP] [GO:0035197 "siRNA binding" evidence=IDA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE013599 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0007626 GO:GO:0016887 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 GO:GO:0035197 GO:GO:0016442 GO:GO:0033227
GO:GO:0070868 GO:GO:0030422 GO:GO:0035087 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0006379 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 GO:GO:0009597
EMBL:BT128787 RefSeq:NP_523778.2 UniGene:Dm.7764 SMR:A1ZAW0
DIP:DIP-54444N IntAct:A1ZAW0 STRING:A1ZAW0
EnsemblMetazoa:FBtr0086904 GeneID:36993 KEGG:dme:Dmel_CG6493
UCSC:CG6493-RA CTD:36993 FlyBase:FBgn0034246 InParanoid:A1ZAW0
OrthoDB:EOG4DJHB9 GenomeRNAi:36993 NextBio:801402 Uniprot:A1ZAW0
Length = 1722
Score = 543 (196.2 bits), Expect = 6.7e-66, Sum P(6) = 6.7e-66
Identities = 158/521 (30%), Positives = 265/521 (50%)
Query: 46 PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIK----DIAQAIKSNGFKKLIIFLAP 101
PR YQL++ + + N I L TG+GKT +A++++K D + I+S G K +F+
Sbjct: 8 PRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGG--KRALFMCN 65
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
TV L QQ +R T+F+V Y G +GVD+W W EI KN VLV T Q+ LD + +
Sbjct: 66 TVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQ 125
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPVVRKGVSSAM 220
+++L + ++IDECHH TG+HP+ + M+ F + K P+V G+T V+ KG +
Sbjct: 126 TYVALSSLSVVIIDECHHGTGHHPFREFMRLFTIANQTKLPRVVGLTG--VLIKG-NEIT 182
Query: 221 DCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKES---CRFYDQ------SKFCGSDL 270
+ ++ ELE T + T+ D EME V + + K + F Q ++ +++
Sbjct: 183 NVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISAEI 242
Query: 271 KGKLEVSWSKFDASLSKLQGSQ-LNCYKDMDDKHKTLRKQL-SDYHAKILYCLDELGLIC 328
+ K VS + + ++ S+ L C +D K+ KQL +D+ LY + E G+
Sbjct: 243 E-KFYVSLDLMNIGVQPIRRSKSLQCLRD--PSKKSFVKQLFNDF----LYQMKEYGIYA 295
Query: 329 AYEAV-KICLE-KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
A A+ + +E + + Q E + E++ H++ L D + D +
Sbjct: 296 ASIAIISLIVEFDIKRRQAETLSVKLMHRTALTLCEKIRHLL--VQKLQDMTYDDDDDNV 353
Query: 387 S-KAVDLGYISTKLHE-LLQLFLSFGKST--QVLCIIFVERIIAAKVVE----RFVKKVP 438
+ + V + + + K+ L+ L +SF + C++FVER K + +++ P
Sbjct: 354 NTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYIQSTP 413
Query: 439 FLTH-LTVAYLTG-STTSVD---ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
L + LT ++ G + S D L K QK ++ FR G NL+ + V+EEG+ V C
Sbjct: 414 ELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDVQAC 473
Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSERSVT 534
++V D KT + Y+QS+GRAR ++F+L ER T
Sbjct: 474 NHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTADKEREKT 514
Score = 120 (47.3 bits), Expect = 6.7e-66, Sum P(6) = 6.7e-66
Identities = 33/91 (36%), Positives = 46/91 (50%)
Query: 1049 LEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLH 1108
L A+T + F MERLE+LGDS LK + + +L Y +EG L+ +S V N L
Sbjct: 1195 LAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1254
Query: 1109 KLGTDRKLQGYIRDSAFDPR-RWVAPGQLSL 1138
D + + F PR W+ PG +SL
Sbjct: 1255 FCLIDADIPKTLNTIQFTPRYTWLPPG-ISL 1284
Score = 99 (39.9 bits), Expect = 6.7e-66, Sum P(6) = 6.7e-66
Identities = 32/114 (28%), Positives = 57/114 (50%)
Query: 1237 INEIKDIESKIGYEFT--VKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQITEYV 1294
I++ + + G+ T V+ LL+EA + + ++ + L H + + SQ E
Sbjct: 1536 ISKFVNFQESQGHRVTNYVRILLEEADVQPTPLDLDDELDMTE-LPHANKCI-SQEAE-- 1591
Query: 1295 KSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSP 1348
K P GE S ++ PKALGD+LE+++ AV +D + +L W + + P
Sbjct: 1592 KGVPPKGEFNMS-TNVDVPKALGDVLEALIAAVYLDCR-DLQRTWEVIFNLFEP 1643
Score = 90 (36.7 bits), Expect = 6.7e-66, Sum P(6) = 6.7e-66
Identities = 25/103 (24%), Positives = 48/103 (46%)
Query: 564 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYK-----------SAEEAYECELTLPS 612
GA + ++++ ++HRYC+ +P+D + P F SA+ + + +P
Sbjct: 563 GAVLLPNNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPV 622
Query: 613 NAPFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 654
N + TI N +K +AC+ L+ +G LN+ +P
Sbjct: 623 NCMLRDTIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVP 665
Score = 82 (33.9 bits), Expect = 5.4e-62, Sum P(6) = 5.4e-62
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 1062 SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1120
S + LE +GD++L + +S ++F K + G L+ RS V N+TL + +L +I
Sbjct: 1467 SYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1525
Score = 77 (32.2 bits), Expect = 6.7e-66, Sum P(6) = 6.7e-66
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 983 NTK-KPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNF 1041
N K K +M V + PEL + P + L LPS++ R+ L+ A LR+ N + N
Sbjct: 960 NAKSKAKMKVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKRFNTYL-NL 1018
Query: 1042 HI 1043
H+
Sbjct: 1019 HL 1020
Score = 72 (30.4 bits), Expect = 4.0e-63, Sum P(6) = 4.0e-63
Identities = 38/140 (27%), Positives = 60/140 (42%)
Query: 1180 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGI-DADLEVSLVDDCITRASLRSYVPRIN 1238
+K IAD EAL+G GL A M+++ I AD++ L + +N
Sbjct: 1363 NKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICRADIDKPLTQLLNLELGGKKMRANVN 1422
Query: 1239 --EIKD-------IESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLS- 1288
EI +E +GY F + L +A+TH S + Y+ L+ +L
Sbjct: 1423 TTEIDGFLINHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGS-YQELEFIGDAILDF 1481
Query: 1289 QITEYV-KSFPK--PGETTD 1305
I+ Y+ ++ K PG TD
Sbjct: 1482 LISAYIFENNTKMNPGALTD 1501
Score = 48 (22.0 bits), Expect = 1.2e-60, Sum P(6) = 1.2e-60
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 1135 QLSLRPVPCECG--VDTLEVPLDGKFFTQDT-KVVVGK-PCDMGHRWMGSKTIADCAEAL 1190
+ ++P P + +D E+P K +Q+ K V K +M K + D EAL
Sbjct: 1560 EADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVLEAL 1619
Query: 1191 IGAYYV 1196
I A Y+
Sbjct: 1620 IAAVYL 1625
Score = 42 (19.8 bits), Expect = 1.9e-08, Sum P(5) = 1.9e-08
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 296 YKDMDDKHKTLRKQLSDYHAKILYCLDEL 324
Y D D KT + + K+LY L EL
Sbjct: 631 YSDPMDNVKTAKISAAFKACKVLYSLGEL 659
Score = 39 (18.8 bits), Expect = 1.2e-60, Sum P(6) = 1.2e-60
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 541 DPEAC-FLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKS 599
D +AC + VKT + V+S G + TT++ L ++ T + I++Y+
Sbjct: 469 DVQACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLF-----TADKEREKTIQQIYQYRK 523
Query: 600 A 600
A
Sbjct: 524 A 524
Score = 37 (18.1 bits), Expect = 6.7e-66, Sum P(6) = 6.7e-66
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 695 RWGEKCGVILHAYKFNFACSIVTEIYSGFV 724
++G + G ++H KF +TE + +V
Sbjct: 924 KYGNRIGDVVHKDKFMIEVRDLTEQLTFYV 953
>FB|FBgn0039016 [details] [associations]
symbol:Dcr-1 "Dicer-1" species:7227 "Drosophila melanogaster"
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0016443 "bidentate ribonuclease III activity" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016246 "RNA interference" evidence=IDA;IMP;TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP;TAS] [GO:0035087 "siRNA loading
onto RISC involved in RNA interference" evidence=IMP] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0031054
"pre-miRNA processing" evidence=IDA;IMP;TAS] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0042078 "germ-line stem cell
division" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0045448 "mitotic cell
cycle, embryonic" evidence=IMP] [GO:0007279 "pole cell formation"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0007367 "segment polarity determination" evidence=IGI]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0070883
"pre-miRNA binding" evidence=IDA] [GO:0003727 "single-stranded RNA
binding" evidence=IDA] [GO:0030727 "germarium-derived female
germ-line cyst formation" evidence=IMP] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0007294
GO:GO:0045448 GO:GO:0046872 GO:GO:0003727 GO:GO:0048813
GO:GO:0003725 GO:GO:0004386 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0033227 GO:GO:0007279 GO:GO:0030422
GO:GO:0007367 GO:GO:0035087 GO:GO:0030727 GO:GO:0042078 KO:K11592
Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:42693
GeneTree:ENSGT00510000046789 EMBL:AY050230 RefSeq:NP_524453.1
UniGene:Dm.1283 ProteinModelPortal:Q9VCU9 SMR:Q9VCU9 DIP:DIP-23028N
IntAct:Q9VCU9 MINT:MINT-923321 STRING:Q9VCU9 PaxDb:Q9VCU9
PRIDE:Q9VCU9 EnsemblMetazoa:FBtr0084324 GeneID:42693
KEGG:dme:Dmel_CG4792 UCSC:CG4792-RA FlyBase:FBgn0039016
eggNOG:COG0571 InParanoid:Q9VCU9 OMA:FLTPRYV OrthoDB:EOG44B8H0
PhylomeDB:Q9VCU9 GenomeRNAi:42693 NextBio:830091 Bgee:Q9VCU9
GermOnline:CG4792 GO:GO:0016443 GO:GO:0070883 Uniprot:Q9VCU9
Length = 2249
Score = 191 (72.3 bits), Expect = 6.5e-60, Sum P(8) = 6.5e-60
Identities = 40/92 (43%), Positives = 60/92 (65%)
Query: 1044 PS-SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1102
PS S+IL+ALT + ++ERLE +GDS LKYA++ +L++TY HEG+LS RS V
Sbjct: 1721 PSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1780
Query: 1103 CNSTLHKLGTDRKLQGYIRDSAFDPR-RWVAP 1133
N L++LG ++L Y+ + F+P W+ P
Sbjct: 1781 ANLNLYRLGRRKRLGEYMIATKFEPHDNWLPP 1812
Score = 169 (64.5 bits), Expect = 6.5e-60, Sum P(8) = 6.5e-60
Identities = 51/172 (29%), Positives = 87/172 (50%)
Query: 534 TDTALSRDPEACFLKACTYV-KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPK 592
T+ EA AC + K +++ TGASV S++ L+++YC LPSD +
Sbjct: 788 TEPPEQEQSEAERFSACLAAYRPKPHLL--TGASVDLGSAIALVNKYCARLPSDTFTKLT 845
Query: 593 PIFKYKSAEEA----YECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGA 647
+++ E A ++ L LP N+P + IVG + L+++L L+AC +LH++G
Sbjct: 846 ALWRCTRNERAGVTLFQYTLRLPINSPLKHDIVGLPMPTQTLARRLAALQACVELHRIGE 905
Query: 648 LNDHLLP-------SVE--------EPSENNLISKKNESLPGAGTTKRKELH 684
L+D L P ++E EP + ++ +E PG TTKR++ +
Sbjct: 906 LDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLSDEPRPG--TTKRRQYY 955
Score = 160 (61.4 bits), Expect = 6.5e-60, Sum P(8) = 6.5e-60
Identities = 44/133 (33%), Positives = 72/133 (54%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTG-----STTSVDA-LTPK 461
+ LC +I+ + A+V+ + ++ P L L Y T +T +A L +
Sbjct: 490 SDTLCALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHR 549
Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
Q+EVL+ FR N+L T V+EEG+ VP C+ V+R+D P T SY+Q +GRAR +
Sbjct: 550 RQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAY 609
Query: 522 FILMLERSERSVT 534
++++ S +S T
Sbjct: 610 HVILVAPSYKSPT 622
Score = 122 (48.0 bits), Expect = 6.5e-60, Sum P(8) = 6.5e-60
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSP 1348
E D ++ PKALGD+ ESI GA+ +D+ ++LD VW ++ ++SP
Sbjct: 2120 EECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSP 2166
Score = 114 (45.2 bits), Expect = 6.5e-60, Sum P(8) = 6.5e-60
Identities = 45/204 (22%), Positives = 91/204 (44%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
F PR +Q+++ A RNTI L + K IA+ L++++++ + +G ++ ++L+ V
Sbjct: 15 FTPRDFQVELLATAYERNTIICLGHRSSKEFIALKLLQELSRRARRHG--RVSVYLSCEV 72
Query: 104 HLVHQQ---YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
+ Y ++ TD V + + +D CW V ++ P+ L L
Sbjct: 73 GTSTEPCSIYTMLTHLTDLRVWQEQPDMQIP-FD-HCW----TDYHVSILRPEGFLYLLE 126
Query: 161 KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVRKGVSS 218
L L V IV+++CH + + + + ++P++ G+ A P+ G
Sbjct: 127 TRELLLSSVELIVLEDCHDSAVYQRIRPLFENHIMPAPPADRPRILGL-AGPLHSAGCE- 184
Query: 219 AMDCEGQISELESTLDSQVFTIED 242
++ LE ++ Q+ T D
Sbjct: 185 LQQLSAMLATLEQSVLCQIETASD 208
Score = 110 (43.8 bits), Expect = 6.5e-60, Sum P(8) = 6.5e-60
Identities = 38/157 (24%), Positives = 70/157 (44%)
Query: 889 DAKNLKDMVVLAIHTGR----IYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIV 944
D + +D VV+ + + + + EI + S S F G D+ +TF +Y+ KYG+
Sbjct: 1127 DPQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG---DNYRTFKHYYLVKYGLT 1183
Query: 945 LIHPGQPLLRLKQSHNPHNLL----VNFNDXXXXXXXXXXXMNTKKPQMHVH--MPPELL 998
+ + QPLL + + N L VN K+ + + PEL
Sbjct: 1184 IQNTSQPLLDVDHTSARLNFLTPRYVN-RKGVALPTSSEETKRAKRENLEQKQILVPELC 1242
Query: 999 VRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEIN 1035
P S+ ++ LP ++ R+ L+LA +R++++
Sbjct: 1243 TVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVS 1279
Score = 95 (38.5 bits), Expect = 6.5e-60, Sum P(8) = 6.5e-60
Identities = 19/32 (59%), Positives = 22/32 (68%)
Query: 1181 KTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1212
K+IADC EALIGAY + G AL M WLG+
Sbjct: 1901 KSIADCVEALIGAYLIECGPRGALLFMAWLGV 1932
Score = 89 (36.4 bits), Expect = 7.0e-36, Sum P(5) = 7.0e-36
Identities = 30/102 (29%), Positives = 53/102 (51%)
Query: 1011 LYLLPSVMQRLESLMLA-SQLREEINCHSRNFHIPSSLILEALTTLGCCESF---SMERL 1066
L+ P+ + L+ L+ + E + R+ S +L+A+T + +RL
Sbjct: 1976 LHFAPNATEELDQLLSGFEEFEESLGYKFRD----RSYLLQAMTHASYTPNRLTDCYQRL 2031
Query: 1067 ELLGDSVLKYAVSCHLFLTYPKKHE-GQLSARRSWAVCNSTL 1107
E LGD+VL Y ++ HL+ P++H G L+ RS A+ N+T+
Sbjct: 2032 EFLGDAVLDYLITRHLYED-PRQHSPGALTDLRS-ALVNNTI 2071
Score = 67 (28.6 bits), Expect = 6.5e-60, Sum P(8) = 6.5e-60
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVK 1295
++ ++ E +GY+F + L +A+THAS + Y+ L+ +L IT ++
Sbjct: 1990 LSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRL-TDCYQRLEFLGDAVLDYLITRHLY 2048
Query: 1296 SFPK---PGETTD 1305
P+ PG TD
Sbjct: 2049 EDPRQHSPGALTD 2061
Score = 44 (20.5 bits), Expect = 8.9e-45, Sum P(6) = 8.9e-45
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 1314 KALGDLLESIVGAVLID 1330
K++ D +E+++GA LI+
Sbjct: 1901 KSIADCVEALIGAYLIE 1917
Score = 43 (20.2 bits), Expect = 5.6e-29, Sum P(6) = 5.6e-29
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 456 DALTPKVQKEVLESFRGGKVNLLFATDVIEEG 487
D+ KV+K +E G+ L A D IE G
Sbjct: 1348 DSKDDKVEKSAIELIIEGEEKLQEADDFIEIG 1379
>POMBASE|SPCC188.13c [details] [associations]
symbol:dcr1 "dicer" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005720 "nuclear heterochromatin"
evidence=IC] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006396 "RNA processing" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0031048 "chromatin silencing by small RNA"
evidence=TAS] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:0035389 "establishment of chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051570 "regulation of histone H3-K9
methylation" evidence=IMP] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] [GO:0090052 "regulation of chromatin
silencing at centromere" evidence=IMP] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR006935
Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 Pfam:PF04851 PROSITE:PS00517
PROSITE:PS50142 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490
SMART:SM00535 PomBase:SPCC188.13c GO:GO:0005829 GO:GO:0005524
GO:GO:0007059 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 GO:GO:0003723
GO:GO:0007049 GO:GO:0004386 GO:GO:0031048 GO:GO:0090052
GO:GO:0051570 GO:GO:0030422 GO:GO:0004540 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0051983 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PIR:T39130 RefSeq:NP_588215.2 PDB:2L6M PDBsum:2L6M
ProteinModelPortal:Q09884 STRING:Q09884 EnsemblFungi:SPCC188.13c.1
GeneID:2538930 KEGG:spo:SPCC188.13c OMA:RMCLICN OrthoDB:EOG4PRWZS
NextBio:20800107 GO:GO:0035389 Uniprot:Q09884
Length = 1374
Score = 295 (108.9 bits), Expect = 1.6e-58, Sum P(4) = 1.6e-58
Identities = 77/217 (35%), Positives = 119/217 (54%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD-IAQAI---KSN-GFKKLIIFLAP 101
R YQ V+ +A ++NT+ V+ TGAGKT++AV LIK + + I +SN KK+ +FL
Sbjct: 13 RKYQQDVYNIASKQNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFLVN 72
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
V LV QQ + IR +V +YG + E Q I K +V+V+T + L +
Sbjct: 73 KVPLVFQQAEYIRSQLPAKVGMFYGELSI-EMSEQLLTNIILKYNVIVITADLFYLFLAR 131
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD---NK-----PKVFGMTASPVV- 212
FLS++ + I+ DECHHA GN Y +IM +FYH++ +K P++FGMTASP
Sbjct: 132 GFLSINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAVLSKKHFTLPRIFGMTASPFTG 191
Query: 213 RKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVF 249
+KG + ++ + E DS+ + + + F
Sbjct: 192 KKG-----NLYHRLYQWEQLFDSKAHVVSENELADYF 223
Score = 244 (91.0 bits), Expect = 1.6e-58, Sum P(4) = 1.6e-58
Identities = 72/233 (30%), Positives = 119/233 (51%)
Query: 395 ISTKLHELLQLF-LSFGKSTQVLCIIFVERIIAAKVVERFVK--KVPFL-THLTVAYLTG 450
++ K+ +LL+L ++ KS V +IFVER A + F+K +P + H + + G
Sbjct: 341 VTDKVFKLLELLKATYRKSDSVRTVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGH--G 398
Query: 451 STTSVD-ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
+ + ++T + QK+ L F+ GK N+L AT V EEG+ VP+C+ VIRF++ +TV+ Y+
Sbjct: 399 PSDQGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYV 458
Query: 510 QSRGRARQHNSQFILMLERSERSVTDTALSRDPEACFLKA------------CTYVKTKS 557
QSRGRAR S+F++ L E + + L + F + C + +
Sbjct: 459 QSRGRARAMASKFLIFLNTEELLIHERILHEEKNLKFALSELSNSNIFDSLVCEERERVT 518
Query: 558 ----YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYEC 606
Y V TGA +T +V+L++ +C L D Y P F + + C
Sbjct: 519 DDIVYEVGETGALLTGLYAVSLLYNFCNTLSRDVYTRYYPTFTAQPCLSGWYC 571
Score = 146 (56.5 bits), Expect = 1.6e-58, Sum P(4) = 1.6e-58
Identities = 40/134 (29%), Positives = 65/134 (48%)
Query: 1003 VPIS--VVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCES 1060
+P+S + S L+PS++ +E+L++AS E + I ++ +ALT+ +
Sbjct: 872 LPVSRHLKNSALLIPSILYHIENLLVASSFIEHFRLDCK---IDTAC--QALTSAESQLN 926
Query: 1061 FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1120
F +RLE GD LK S +FL +P E QL R + N L+K+ D +L Y
Sbjct: 927 FDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYA 986
Query: 1121 RDSAFDPRRWVAPG 1134
+ + R W G
Sbjct: 987 LSTPLEIRHWCPYG 1000
Score = 124 (48.7 bits), Expect = 1.6e-58, Sum P(4) = 1.6e-58
Identities = 45/135 (33%), Positives = 64/135 (47%)
Query: 1181 KTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEI 1240
K IAD EA IGA + GL +AL + K L + L++S D+ L +Y + +
Sbjct: 1020 KRIADMVEASIGACLLDSGLDSALKICKSLSVGL-LDISNWDEWNNYFDLNTYADSLRNV 1078
Query: 1241 KD-----IESKIGYEFTVKFLLQEAITHASVQEFY-CYQNLYKHLQHCSTLLLSQI-TEY 1293
+ IE IGY F K LL A H S+ Y+N Y+ L+ +L I +Y
Sbjct: 1079 QFPYSSYIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYEN-YQQLEFLGDAVLDYIIVQY 1137
Query: 1294 V-KSFPKP--GETTD 1305
+ K +P GE TD
Sbjct: 1138 LYKKYPNATSGELTD 1152
Score = 109 (43.4 bits), Expect = 7.8e-51, Sum P(4) = 7.8e-51
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 1056 GCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRK 1115
G E++ ++LE LGD+VL Y + +L+ YP G+L+ +S+ VCN +L +G
Sbjct: 1114 GIYENY--QQLEFLGDAVLDYIIVQYLYKKYPNATSGELTDYKSFYVCNKSLSYIGFVLN 1171
Query: 1116 LQGYIR-DSA 1124
L YI+ +SA
Sbjct: 1172 LHKYIQHESA 1181
Score = 100 (40.3 bits), Expect = 7.0e-43, Sum P(5) = 7.0e-43
Identities = 27/98 (27%), Positives = 44/98 (44%)
Query: 558 YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYEC-ELTLPSNAPF 616
Y V TGA +T +V+L++ +C L D Y P F + + C E+ LP
Sbjct: 523 YEVGETGALLTGLYAVSLLYNFCNTLSRDVYTRYYPTFTAQPCLSGWYCFEVELPKACKV 582
Query: 617 QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP 654
G +++ +KQ C L ++G ++ HL P
Sbjct: 583 PAAQGSPAKSIRKAKQNAAFIMCLDLIRMGLIDKHLKP 620
Score = 87 (35.7 bits), Expect = 1.1e-54, Sum P(4) = 1.1e-54
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 1274 NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGP----SMKAPKALGDLLESIVGAVLI 1329
NL+K++QH S + I EY + ET P + +PK + D LE+++ A+ +
Sbjct: 1171 NLHKYIQHESAAMCDAIFEYQELIEAFRETASENPWFWFEIDSPKFISDTLEAMICAIFL 1230
Query: 1330 DTKLNLDEV 1338
D+ +L +
Sbjct: 1231 DSGFSLQSL 1239
Score = 57 (25.1 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 38/163 (23%), Positives = 66/163 (40%)
Query: 1194 YYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTV 1253
Y++ L+A+ ++ + +D ++ + + L R+ D K+G TV
Sbjct: 890 YHIENLLVASSFI-EHFRLDCKIDTACQALTSAESQLNFDYDRLEFYGDCFLKLGASITV 948
Query: 1254 --KFL-LQEAITHASVQEFYCYQNLYKHLQHCST--LLLSQITEYVKSFPKPGETTDSGP 1308
KF QE H + ++ NLYK C LS E P + + S
Sbjct: 949 FLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYALSTPLEIRHWCPYGFQKSTSDK 1008
Query: 1309 SMKAP------KALGDLLESIVGAVLIDTKLNLDEVWRIFKPI 1345
A K + D++E+ +GA L+D+ LD +I K +
Sbjct: 1009 CRYAVLQKLSVKRIADMVEASIGACLLDS--GLDSALKICKSL 1049
Score = 40 (19.1 bits), Expect = 7.0e-43, Sum P(5) = 7.0e-43
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 395 ISTKLHELLQLFLSFGKSTQVLCIIFVE 422
+ T L E + + L FG+ + + FVE
Sbjct: 263 VKTALAETIDMGLWFGEQVWLYLVDFVE 290
Score = 38 (18.4 bits), Expect = 1.4e-39, Sum P(3) = 1.4e-39
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 1558 GDPRADKKSSFDSAALIMLHELERQGKI 1585
G P + + +AA IM +L R G I
Sbjct: 587 GSPAKSIRKAKQNAAFIMCLDLIRMGLI 614
Score = 38 (18.4 bits), Expect = 1.4e-36, Sum P(5) = 1.4e-36
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
PK+ +L S G +V ++ T IE+ + S+++ +L K + Y+ G
Sbjct: 694 PKIDSFILNSTVGPRVKIVLET--IEDSFKID--SHLL--ELLKKSTRYLLQFG 741
Score = 37 (18.1 bits), Expect = 1.7e-39, Sum P(3) = 1.7e-39
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 1477 YCMTVGTPVVAPINMKKGGPRTSL 1500
YC V P + +G P S+
Sbjct: 570 YCFEVELPKACKVPAAQGSPAKSI 593
>ASPGD|ASPL0000041548 [details] [associations]
symbol:dclB species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001650
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
GO:GO:0005524 GO:GO:0046872 EMBL:BN001306 GO:GO:0051607
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AACD01000052
ProteinModelPortal:P0C5H7 HOGENOM:HOG000048683 OrthoDB:EOG4JWZNK
Uniprot:P0C5H7
Length = 1429
Score = 260 (96.6 bits), Expect = 2.8e-57, Sum P(5) = 2.8e-57
Identities = 106/370 (28%), Positives = 173/370 (46%)
Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
+L+ L K +ASL +GS L + D+ + + Q+ + K ++ ELG+
Sbjct: 218 ELRRVLYTPLMKENASL--WEGSTLQKLLERDNTYCS--GQMKTFVCKAVHIFQELGIWA 273
Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
A ++ +E++L Y S + Y E L I S P+ D +D K
Sbjct: 274 AEYFIRASVEELLS-----HAYVHSKIDLDYDEREYLVNILSKSPVPD---IDVHSTDPK 325
Query: 389 AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP-----FLT-- 441
D +S K L+ FL + +IFVE+ A V+ + P F T
Sbjct: 326 --DFP-VSPKFEALIS-FLMSTEDINFSGLIFVEQRAAVTVMSYLLSTHPSTRDRFRTGS 381
Query: 442 HLTVAYLTGSTTSV-DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
+ ++ T T + D L+ K+Q + L+ FR G+ NL+ ATDV++EG+ V CS VI ++
Sbjct: 382 FIGMSNSTNRKTMLGDLLSAKMQPDTLDDFRYGRKNLIVATDVLKEGIDVSACSVVICYN 441
Query: 501 LPKTVSSYIQSRGRARQHNSQFILMLE-RSERSVTDTALSRDP---EACF--------LK 548
+PK S+IQ RGRAR+ NS + +ML + S D + EAC L+
Sbjct: 442 IPKGFESFIQRRGRARRQNSTYSMMLSTEDDGSTLDKWQKFEKIMEEACLEDRRRTEELR 501
Query: 549 ACTYVKTK---SYIVESTGASVTTDSSV-NLIHRYCEMLPSDKYYTPKPIFKYKSAEEAY 604
A + + V STGA +T + ++ +L+H +C+ LP Y KP F ++ +
Sbjct: 502 ALGSLDEDVCTRFCVRSTGAILTAEYAMQHLVH-FCDTLPRQNYVEDKPEFSFERNDGGL 560
Query: 605 -ECELTLPSN 613
++ LPS+
Sbjct: 561 LRAKVILPSS 570
Score = 259 (96.2 bits), Expect = 2.8e-57, Sum P(5) = 2.8e-57
Identities = 72/228 (31%), Positives = 116/228 (50%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL++FE + + N I V+ TG+GKT IA++ I I + S+G KLI FLAPTV L
Sbjct: 15 RSYQLEMFEASLKGNIIVVMGTGSGKTQIALLRI--IHELENSDG--KLIWFLAPTVPLC 70
Query: 107 HQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQC-WQKEINKNDVLVMTPQILLDALRKAFL 164
QQ+ VI H + G+ V+ W Q W + V+V TP +L DA+ F+
Sbjct: 71 LQQHRVISQHIPAVKSRTLLGSDKVELWTEQAVWDAVLEGLQVIVSTPAVLHDAMTHGFV 130
Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK------PKVFGMTASP-VVRKGVS 217
+ + ++ DE HH HP IM+ FYH + + P++ G+TAS R+G+
Sbjct: 131 RISRLGLLIFDEAHHCIRKHPTNMIMRNFYHPALQEYGPGAVPRILGLTASAGSSREGLQ 190
Query: 218 SA-MDCEGQISELESTLDSQV-FTIEDKTEMEVFVPSAKESCRFYDQS 263
+ M+ + ++ + +T + ++ P KE+ ++ S
Sbjct: 191 TIEMNLNSVCTTPQAHRQELLEYTHMPELRRVLYTPLMKENASLWEGS 238
Score = 156 (60.0 bits), Expect = 2.8e-57, Sum P(5) = 2.8e-57
Identities = 39/121 (32%), Positives = 61/121 (50%)
Query: 1014 LPSVMQRLESLMLASQLREEINCHSRNFHIPSSL-ILEALTTLGCCESFSMERLELLGDS 1072
+P ++ RLE+ ++A++L E + R+ ++ A+T +R E GDS
Sbjct: 861 IPVILDRLEAALVATRLCETV---LRDIQFQDLRHVITAITMPLAQAPTDYQRYEFFGDS 917
Query: 1073 VLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVA 1132
VLK+ V+ LF P HEG L+ V N+ L + D+ L YI + F PR+W A
Sbjct: 918 VLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIISNRFTPRKWSA 977
Query: 1133 P 1133
P
Sbjct: 978 P 978
Score = 119 (46.9 bits), Expect = 2.8e-57, Sum P(5) = 2.8e-57
Identities = 39/117 (33%), Positives = 60/117 (51%)
Query: 1176 RWMGSKTIADCAEALIGAYYVGGGLIAALY-MMKWLGIDADL-EVSLVDDCITRASLRSY 1233
R M +K +AD EALIGA Y+ GGL A ++++L + +L E L S
Sbjct: 991 RSMSAKVLADVVEALIGAAYIDGGLHKAQSCIVRFLP-EIELPETKLPRPESMPMSKDHK 1049
Query: 1234 VPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQI 1290
P + + +++E+ IGY F K LL EA+TH S Q+ Y+ L+ +L +
Sbjct: 1050 KPHLIQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQS-YQRLEFLGDAVLDML 1105
Score = 105 (42.0 bits), Expect = 2.3e-41, Sum P(5) = 2.3e-41
Identities = 29/102 (28%), Positives = 53/102 (51%)
Query: 558 YIVESTGASVTTDSSV-NLIHRYCEMLPSDKYYTPKPIFKYKSAEEAY-ECELTLPS--N 613
+ V STGA +T + ++ +L+H +C+ LP Y KP F ++ + ++ LPS N
Sbjct: 514 FCVRSTGAILTAEYAMQHLVH-FCDTLPRQNYVEDKPEFSFERNDGGLLRAKVILPSSVN 572
Query: 614 APFQTIVGPTS-RNKNLSKQLVCLEACEKLHQVGALNDHLLP 654
+ G + + +K+ A + L++ G +ND+LLP
Sbjct: 573 PKVRRAEGKAWWKTERAAKKEAAFYAYKALYEHGLVNDNLLP 614
Score = 58 (25.5 bits), Expect = 7.8e-40, Sum P(4) = 7.8e-40
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 1046 SLILEALTTLGCCESFSME---RLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1102
+L++EALT C S++ RLE LGD+VL + + + + +G+++ + A+
Sbjct: 1071 TLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAHHVECQQGEMTKIKH-AI 1129
Query: 1103 CNSTL 1107
N L
Sbjct: 1130 VNGHL 1134
Score = 54 (24.1 bits), Expect = 2.8e-57, Sum P(5) = 2.8e-57
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 1309 SMKAPKALGDLLESIVGAVLIDT 1331
++ A K D++ESI+GA+ +D+
Sbjct: 1227 AIHADKFFSDVVESIIGAIFVDS 1249
Score = 52 (23.4 bits), Expect = 9.1e-50, Sum P(4) = 9.1e-50
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 1309 SMKAPKALGDLLESIVGAVLIDTKLN 1334
SM A K L D++E+++GA ID L+
Sbjct: 992 SMSA-KVLADVVEALIGAAYIDGGLH 1016
Score = 50 (22.7 bits), Expect = 1.5e-49, Sum P(4) = 1.5e-49
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 1181 KTIADCAEALIGAYYV--GGGLIAALYMMKWLGIDADLEVSLVDDCI--TRASLRSYVPR 1236
K +D E++IGA +V GG L A ++ LG+ + ++D+ + T + R+ +
Sbjct: 1232 KFFSDVVESIIGAIFVDSGGDLGACAGFIERLGL-VRIAKRILDERVDVTHPTQRAQI-- 1288
Query: 1237 INEIKDIESKIG 1248
E++ + +++G
Sbjct: 1289 --ELQKLAARLG 1298
Score = 50 (22.7 bits), Expect = 2.8e-17, Sum P(3) = 2.8e-17
Identities = 53/259 (20%), Positives = 102/259 (39%)
Query: 337 LEKVLKAQEECE-IYRQSSLQ-CKYFLEEVLHVIGSALPLADKIFLDFG---FDYSKAVD 391
LE L A CE + R Q ++ + + + A P + + FG ++ A
Sbjct: 868 LEAALVATRLCETVLRDIQFQDLRHVITAITMPLAQA-PTDYQRYEFFGDSVLKFTVAAS 926
Query: 392 LGYISTKLHE--LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK---VPFLTHLTVA 446
L Y + HE L + + ++ ++ + + A + RF + P ++
Sbjct: 927 LFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIISNRFTPRKWSAPLISEKL-- 984
Query: 447 YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC--SYVIRFDLPKT 504
Y + ST S+ A KV +V+E+ G + + + +C ++ +LP+T
Sbjct: 985 YASASTRSMSA---KVLADVVEALIGAA----YIDGGLHKAQ---SCIVRFLPEIELPET 1034
Query: 505 VSSYIQSRGRARQHNSQFILMLERSERSVTDTALSRD--PEACFLKACTY-VKTKSYI-V 560
+S ++ H ++ E E + T + EA +C Y +SY +
Sbjct: 1035 KLPRPESMPMSKDHKKPHLIQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRL 1094
Query: 561 ESTGASVTTDSSVNLIHRY 579
E G +V V+LI +
Sbjct: 1095 EFLGDAVLDMLIVDLIRAH 1113
Score = 48 (22.0 bits), Expect = 1.4e-13, Sum P(5) = 1.4e-13
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 79 LIKD-IAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111
L+ D + KS F + I L P V V +QYD
Sbjct: 607 LVNDNLLPLTKSREFTRKDISLLPAVQKVSEQYD 640
Score = 45 (20.9 bits), Expect = 3.3e-19, Sum P(5) = 3.3e-19
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 14 EVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIY 49
+VHS +P D S A+ ST INF I+
Sbjct: 318 DVHSTDPKDFPVSPKFEALISFLMSTEDINFSGLIF 353
Score = 44 (20.5 bits), Expect = 2.2e-38, Sum P(4) = 2.2e-38
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 1269 FYCYQNLYKH-LQHCSTLLLSQITEYVK 1295
FY Y+ LY+H L + + L L++ E+ +
Sbjct: 596 FYAYKALYEHGLVNDNLLPLTKSREFTR 623
Score = 40 (19.1 bits), Expect = 1.5e-37, Sum P(3) = 1.5e-37
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 709 FNFACSIVTEIYSGFVLLIESELDNDVGN 737
F F C V ++ SG +E ++++ G+
Sbjct: 1303 FRFECRTVRDLSSGKRKTLEVDINDHYGD 1331
Score = 40 (19.1 bits), Expect = 9.6e-35, Sum P(5) = 9.6e-35
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 798 LKRETNSLWSPSYMYLLLPLEIVNTFGDGSWR 829
L +E SLW S + LL + NT+ G +
Sbjct: 227 LMKENASLWEGSTLQKLLERD--NTYCSGQMK 256
Score = 40 (19.1 bits), Expect = 7.9e-15, Sum P(3) = 7.9e-15
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 417 CIIFVERIIAAKVVERFVKKVPFLTHLT 444
C F+ER+ ++ +R + + +TH T
Sbjct: 1256 CAGFIERLGLVRIAKRILDERVDVTHPT 1283
>UNIPROTKB|A4RHU9 [details] [associations]
symbol:DCL2 "Dicer-like protein 2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS00690 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00490 SMART:SM00535 GO:GO:0005524
GO:GO:0046872 GO:GO:0051607 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 OrthoDB:EOG4JWZNK
RefSeq:XP_003715365.1 GeneID:2683150 KEGG:mgr:MGG_12357
Uniprot:A4RHU9
Length = 1485
Score = 313 (115.2 bits), Expect = 1.5e-54, Sum P(5) = 1.5e-54
Identities = 80/211 (37%), Positives = 121/211 (57%)
Query: 29 DHAV-DGPSSSTNSI-NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA 86
D A+ + P S N + I R YQL++F+ + ++N I ++TG+GKT +AV+ I+ A+
Sbjct: 46 DDAISEEPQPSGNGPRSIIARAYQLEMFQASMQQNIIVSMDTGSGKTQVAVLRIR--AE- 102
Query: 87 IKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY---GAKGVDEW-DSQCWQKEI 142
++ +K + FLAPTV L QQY+VIR + +V G VD W D Q W +
Sbjct: 103 LERTPPEKRVWFLAPTVALCAQQYEVIR--SQIKVANSIVMTGDDNVDSWSDVQTWDAVL 160
Query: 143 NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY--HKS--D 198
V+V T IL +AL AF+++D + +V+DE H+ TG P IMK FY KS D
Sbjct: 161 ANVRVVVCTYMILFEALSHAFVTMDSISLLVMDEAHNCTGKFPGRLIMKRFYMPRKSAGD 220
Query: 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISEL 229
+ P + G+TASPV++ +SS D E + +
Sbjct: 221 HVPHILGLTASPVMKSDLSSMEDLESSLDSV 251
Score = 184 (69.8 bits), Expect = 1.5e-54, Sum P(5) = 1.5e-54
Identities = 71/257 (27%), Positives = 117/257 (45%)
Query: 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTS 454
S KL LL++ + S + I+FV+ A ++ + + +P + V + G++
Sbjct: 413 SIKLQVLLRILRGYEGSP--VGIVFVKERATAGILSQLLAIIPDINARYKVGCMVGTSRY 470
Query: 455 VDA---LTPKVQKE----VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
+ + +Q+ LE FR G +NLL AT V+EEG+ VP C+ VI FD+P + S
Sbjct: 471 MSRKMNIHEVLQQGDDLLALEKFRSGAINLLVATSVLEEGIDVPVCNLVICFDMPANLKS 530
Query: 508 YIQSRGRARQHNSQFILMLERSER-SVTD-----TALSRDPEACF--LKACTYVKTKSYI 559
+IQ RGRAR S+ LM+E SV D A+ + E L V+ + +
Sbjct: 531 FIQRRGRARMRESKLHLMIEEDSLVSVKDWGALEAAMKQRYENDMRELDHLAQVEEEDEM 590
Query: 560 ------VESTGASVTTDSSVNLIHRYCEMLP-SDKYYTPKPIFKYKSAEEAYECELTLPS 612
+T A VT D + + +C ++ S +Y P + + A+ +P
Sbjct: 591 DVPPLHSRTTAAKVTVDDAKGHLEHFCRVVTRSQQYVDASPEYLVTTKTTAFVGGKPIPI 650
Query: 613 NAPFQTIVGPTSRNKNL 629
T++ P S NL
Sbjct: 651 LGV--TVLLPASLPPNL 665
Score = 140 (54.3 bits), Expect = 1.5e-54, Sum P(5) = 1.5e-54
Identities = 47/151 (31%), Positives = 73/151 (48%)
Query: 984 TKKPQMHVHMPPELLVRVD-VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFH 1042
T P+ ++ PE L D VP ++V+ L+PS+ Q +E +A +L S +F
Sbjct: 944 TSSPRRFDYIIPEQLCTFDTVPATLVQLGMLVPSITQAMEPYFVAQELLRRTALGSLDFK 1003
Query: 1043 IPSSLILEALTTLGCCESFSMERLELLGDSVLKY--AVSCHLF-LTYPKKHEGQLSARRS 1099
L++ +T+ + ER+E LGD+VLK AV+C L +P EG LS +
Sbjct: 1004 -DIDLVMMVITSSSAGRLTNYERVEFLGDAVLKLGAAVTCATNNLHFP---EGYLSLLKD 1059
Query: 1100 WAVCNSTLHKLGTDRKLQGYIRDSAFDPRRW 1130
V NS L K T L +I + ++W
Sbjct: 1060 RLVSNSRLCKAATALGLDQFIITRQYSLKQW 1090
Score = 131 (51.2 bits), Expect = 1.5e-54, Sum P(5) = 1.5e-54
Identities = 38/92 (41%), Positives = 52/92 (56%)
Query: 1176 RWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDD--CITRASLRSY 1233
R M SKT+AD EALIGA Y+ GG+ AL + L I + SL + + + +L
Sbjct: 1104 RKMSSKTLADVTEALIGAAYIEGGMSKALRCIS-LMIPNERWRSLDESRAVLYQVALND- 1161
Query: 1234 VPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1265
+P + + +E +GY F K LL EAITHAS
Sbjct: 1162 IPLPSTLGPLEELLGYSFNKKSLLIEAITHAS 1193
Score = 80 (33.2 bits), Expect = 7.1e-44, Sum P(5) = 7.1e-44
Identities = 29/127 (22%), Positives = 57/127 (44%)
Query: 562 STGASVTTDSSVNLIHRYCEMLP-SDKYYTPKPIFKYKSAEEAYE---------CELTLP 611
+T A VT D + + +C ++ S +Y P + + A+ + LP
Sbjct: 599 TTAAKVTVDDAKGHLEHFCRVVTRSQQYVDASPEYLVTTKTTAFVGGKPIPILGVTVLLP 658
Query: 612 SNAPFQTIVGPTSRN----KNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISK 667
++ P +SR+ +N K L+A + L++ G +N+HLLP E++ + +
Sbjct: 659 ASLPPNLRQAHSSRDWISERNAKKD-AALQAYKMLYEAGLINEHLLPI----RESDFVDR 713
Query: 668 KNESLPG 674
+ + PG
Sbjct: 714 EVDGRPG 720
Score = 75 (31.5 bits), Expect = 3.0e-39, Sum P(4) = 3.0e-39
Identities = 29/70 (41%), Positives = 37/70 (52%)
Query: 1021 LESLMLASQLR--EEINCHSRNFHIPSSLILEALTTL-----GCCESFSMERLELLGDSV 1073
L + L S L EE+ +S N SL++EA+T G S S+ERLE LGDSV
Sbjct: 1159 LNDIPLPSTLGPLEELLGYSFN---KKSLLIEAITHASYNIPGSAGS-SLERLEFLGDSV 1214
Query: 1074 LKYAVSCHLF 1083
L + V LF
Sbjct: 1215 LDFVVVARLF 1224
Score = 52 (23.4 bits), Expect = 1.5e-54, Sum P(5) = 1.5e-54
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 1310 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPI 1345
++ K D+LE+++GAV +D+ +L+E ++ + +
Sbjct: 1336 LRISKVHSDVLEAVIGAVWVDSG-SLEECEKLIERV 1370
Score = 52 (23.4 bits), Expect = 5.8e-46, Sum P(4) = 5.8e-46
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 1170 PCDMGHRWMGSKTIADCAEALIGAYYV-GGGLIAALYMMKWLGIDADLEVSLVD 1222
P D+ R SK +D EA+IGA +V G L +++ +GI L+ +L D
Sbjct: 1329 PWDLLARLRISKVHSDVLEAVIGAVWVDSGSLEECEKLIERVGILRYLDRALRD 1382
Score = 51 (23.0 bits), Expect = 6.5e-41, Sum P(5) = 6.5e-41
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 906 IYSIVEIVNNSSAESPFDGNTDDDSKTFVN 935
IY++VE V+N A S + G DD + +++
Sbjct: 362 IYNVVEKVSNLDARSSWLGGWLDDEQRYLH 391
Score = 42 (19.8 bits), Expect = 7.5e-22, Sum P(2) = 7.5e-22
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 306 LRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQS 353
L + L D KIL+ +ELG + V ++K +A E+Y S
Sbjct: 1376 LDRALRD-GVKILHPKEELGRVAQNNKVVYKVDKAKRAAR-AEVYEVS 1421
Score = 41 (19.5 bits), Expect = 8.0e-45, Sum P(4) = 8.0e-45
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 1314 KALGDLLESIVGAVLID 1330
K L D+ E+++GA I+
Sbjct: 1109 KTLADVTEALIGAAYIE 1125
Score = 41 (19.5 bits), Expect = 9.7e-36, Sum P(4) = 9.7e-36
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 642 LHQVGALNDHLLPSVEEPSENNL 664
L+QV ALND LPS P E L
Sbjct: 1154 LYQV-ALNDIPLPSTLGPLEELL 1175
Score = 38 (18.4 bits), Expect = 2.8e-15, Sum P(5) = 2.8e-15
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 529 SERSVTDTALSRDPE 543
S S TD A+S +P+
Sbjct: 40 STHSTTDDAISEEPQ 54
Score = 37 (18.1 bits), Expect = 3.4e-34, Sum P(4) = 3.4e-34
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 942 GIVLIHPGQPLLRLKQSH 959
G+ ++HP + L R+ Q++
Sbjct: 1383 GVKILHPKEELGRVAQNN 1400
>DICTYBASE|DDB_G0289659 [details] [associations]
symbol:rrpA "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0289659
GO:GO:0005524 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000148 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_636093.1
ProteinModelPortal:Q54H25 EnsemblProtists:DDB0191515 GeneID:8627305
KEGG:ddi:DDB_G0289659 InParanoid:Q54H25 Uniprot:Q54H25
Length = 2417
Score = 405 (147.6 bits), Expect = 7.0e-31, Sum P(2) = 7.0e-31
Identities = 152/509 (29%), Positives = 252/509 (49%)
Query: 42 INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD---IAQAIKSNG-FKKLII 97
+ IPR YQ++ + + + NT+ VL TG GKT++++M + + I S G K++ +
Sbjct: 280 VEIIPRDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIAL 339
Query: 98 FLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
FL V LV QQ I T+ +V + YG +++ ++ + + + DVLV T L++
Sbjct: 340 FLVDRVPLVTQQAGAIEAITNLKVCKLYGE--INDSRTRAFVRS-KEYDVLVSTVGSLVN 396
Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD-N-KPKVFGMTASPVVRKG 215
L L++ FI DE HHATG H + K++ ++ K+D N +P++ G+TAS +V G
Sbjct: 397 LLEVRHLNILDFYFITFDEVHHATGEHDFNKVV-DYIRKTDLNYRPRILGLTAS-LVSIG 454
Query: 216 VSSAMDCEGQISELESTLDSQVFT----IEDKTEMEV------FVPSAKESCRFYDQSKF 265
S+ + I ++E + S+VF + + T+ E+ F S +ES +F
Sbjct: 455 NSTIDIVQRSIKDMEERMLSRVFKPTSLLTNSTQSELQPELVSFKTSGQESLIETSICEF 514
Query: 266 CGSDLKGKLEVSWSKFDASLSKLQG--SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
S+ K +L++ + D L ++G S L + +D K L +Y K+L L
Sbjct: 515 LVSNSK-ELQIFLNYSDVDLDGVRGNPSFLKALERLDKYSKQLESIYIEY-TKVLIELYA 572
Query: 324 LGLICAYEAVKICLEKV-LKAQ---EECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
L + + E K L ++ L Q +E E+Y + L+ +Y+ I + F
Sbjct: 573 LLSVLSTEGPKQVLTRLDLLMQSTNQENELYNKL-LELRYY-------ISGQYEDRESNF 624
Query: 380 LDFGFDYSKAVD-LGY-ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437
Y K + L Y IS LQ K ++L +FVE A + +KK
Sbjct: 625 EKGSTRYRKLISSLEYAISDASDGELQ------KDLRIL--VFVETRFGASNLTSMLKKE 676
Query: 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
PF +L L G VD + + Q+ ++ FR GK L+ T+V+EEG+ V +C+ VI
Sbjct: 677 PFQEYLHTKRLVGHN-GVDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEGIDVQDCNIVI 735
Query: 498 RFDLPKTVSSYIQSRGRARQHN-SQFILM 525
+D ++ S IQ RGRAR N S+FI++
Sbjct: 736 CYDGILSLKSLIQRRGRARSKNESKFIII 764
Score = 40 (19.1 bits), Expect = 7.0e-31, Sum P(2) = 7.0e-31
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 1120 IRDSAFDPRR-WVAPGQLSLRPVPCECGVDTLEV 1152
+ + A DP ++ P + P+ C TLE+
Sbjct: 1385 VNNQAPDPSGIYIRPSMVKFNPIDCGDEHRTLEI 1418
Score = 38 (18.4 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 868 TSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSA 918
TS CK + VI L + +D V A+ + + +IVN+++A
Sbjct: 1424 TSRCKLN---RQVISL----LSTLGTQDNVFFALQDHYLNQVAQIVNDTNA 1467
>DICTYBASE|DDB_G0291249 [details] [associations]
symbol:rrpB "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0291249
GO:GO:0005524 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 KO:K11699
PANTHER:PTHR23079 RefSeq:XP_635263.1 ProteinModelPortal:Q54EH7
EnsemblProtists:DDB0220017 GeneID:8628208 KEGG:ddi:DDB_G0291249
InParanoid:Q54EH7 OMA:NINERTN ProtClustDB:CLSZ2429575
Uniprot:Q54EH7
Length = 2403
Score = 401 (146.2 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 150/509 (29%), Positives = 253/509 (49%)
Query: 42 INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKD---IAQAIKSNG-FKKLII 97
+ IPR YQ++ + + + NT+ VL TG GKT++++M + + I S G K++ +
Sbjct: 269 VEIIPRDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIAL 328
Query: 98 FLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
FL V LV QQ I T+ +V + YG +++ ++ + + + DVLV T L++
Sbjct: 329 FLVDRVPLVTQQAGAIEAITNLKVCKLYGE--INDSRTRAFVRS-KEYDVLVSTVGSLVN 385
Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD-N-KPKVFGMTASPVVRKG 215
L L++ FI DE HHATG H + K++ ++ K+D N +P++ G+TAS +V G
Sbjct: 386 LLEVRHLNILDFYFITFDEVHHATGEHDFNKVV-DYIRKTDLNFRPRILGLTAS-LVSIG 443
Query: 216 VSSAMDCEGQISELESTLDSQVFT----IEDKTEMEV------FVPSAKESCRFYDQSKF 265
S+ + I ++E + S+VF + + T+ E+ F S +ES +F
Sbjct: 444 NSTIDIVQRSIKDMEERMLSRVFKPTSLLTNSTQSELQPELVSFKTSGQESLIETSICEF 503
Query: 266 CGSDLKGKLEVSWSKFDASLSKLQG--SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDE 323
S+ K +L++ + D L ++G S L + +D K L +Y K+L L E
Sbjct: 504 LVSNSK-ELQIFLNYSDVDLDGVRGNPSFLKALERLDKYSKQLESIYIEY-TKVLIKLYE 561
Query: 324 LGLICAYEAVKICL---EKVLKA-QEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIF 379
L + + E K L + ++++ +E E+Y + L+ +Y+ I + F
Sbjct: 562 LLSVLSTEGPKQVLTGLDLLMQSTNQENELYNKL-LELRYY-------ISGQYEDRESNF 613
Query: 380 LDFGFDYSKAVD-LGY-ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437
Y K + L Y IS LQ K ++L +FVE A + +KK
Sbjct: 614 EKGSTRYRKLISSLEYAISDASDGELQ------KDLRIL--VFVETRSGASNLTSMLKKE 665
Query: 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
PF +L L G D + + Q+ ++ FR GK L+ T+V+EEG+ V +C+ VI
Sbjct: 666 PFQEYLHTKRLVGHNGD-DGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEGIDVQDCNIVI 724
Query: 498 RFDLPKTVSSYIQSRGRARQHN-SQFILM 525
+D ++ S IQ RGRAR N S+FI++
Sbjct: 725 CYDGILSLKSLIQRRGRARSKNESKFIII 753
Score = 39 (18.8 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 1120 IRDSAFDPRR-WVAPGQLSLRPVPCECGVDTLEV 1152
+ + A DP ++ P + P+ C TLE+
Sbjct: 1400 VNNQAPDPSGIYIRPSMVKFNPIVCGDEHRTLEI 1433
Score = 38 (18.4 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 868 TSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSA 918
TS CK + VI L + +D V A+ + + +IVN+++A
Sbjct: 1439 TSRCKLN---RQVISL----LSTLGTQDNVFFALQDHYLNQVAQIVNDTNA 1482
>MGI|MGI:2442858 [details] [associations]
symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 58"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0002230 "positive regulation of defense response
to virus by host" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=ISO;IDA] [GO:0003727
"single-stranded RNA binding" evidence=ISO;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005856 "cytoskeleton" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005923 "tight
junction" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=ISO] [GO:0009597 "detection of virus" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0015629 "actin
cytoskeleton" evidence=ISO] [GO:0016020 "membrane" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0030054 "cell junction" evidence=IEA] [GO:0030334 "regulation
of cell migration" evidence=ISO] [GO:0032587 "ruffle membrane"
evidence=ISO] [GO:0032727 "positive regulation of interferon-alpha
production" evidence=ISO] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISO;IMP] [GO:0039529 "RIG-I
signaling pathway" evidence=ISO] [GO:0042802 "identical protein
binding" evidence=ISO] [GO:0042993 "positive regulation of
transcription factor import into nucleus" evidence=ISO] [GO:0042995
"cell projection" evidence=IEA] [GO:0043330 "response to exogenous
dsRNA" evidence=IMP] [GO:0045087 "innate immune response"
evidence=ISO;IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS50209 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2442858
GO:GO:0005829 GO:GO:0005524 GO:GO:0046872 GO:GO:0015629
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0045087
GO:GO:0002230 GO:GO:0009615 GO:GO:0030334 GO:GO:0005923
EMBL:AL831793 EMBL:CH466538 GO:GO:0003690 Reactome:REACT_107772
GO:GO:0032587 GO:GO:0003725 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0042993 GO:GO:0043330 GO:GO:0032727 eggNOG:COG1111
GeneTree:ENSGT00510000046789 GO:GO:0032728 CTD:23586
HOGENOM:HOG000230911 HOVERGEN:HBG052325 KO:K12646 OMA:KCKAFAC
OrthoDB:EOG4SQWW0 GO:GO:0009597 GO:GO:0039529 EMBL:AY553221
EMBL:AK049305 EMBL:AK078287 EMBL:AK087261 IPI:IPI00273914
IPI:IPI00458717 IPI:IPI00655015 IPI:IPI00655142 RefSeq:NP_766277.3
UniGene:Mm.86382 PDB:3TBK PDBsum:3TBK ProteinModelPortal:Q6Q899
SMR:Q6Q899 STRING:Q6Q899 PhosphoSite:Q6Q899 PaxDb:Q6Q899
PRIDE:Q6Q899 DNASU:230073 Ensembl:ENSMUST00000037907 GeneID:230073
KEGG:mmu:230073 UCSC:uc008shh.1 UCSC:uc012dbu.1 InParanoid:A2AP28
EvolutionaryTrace:Q6Q899 NextBio:379764 Bgee:Q6Q899
CleanEx:MM_DDX58 Genevestigator:Q6Q899
GermOnline:ENSMUSG00000040296 Uniprot:Q6Q899
Length = 926
Score = 242 (90.2 bits), Expect = 5.6e-27, Sum P(2) = 5.6e-27
Identities = 86/276 (31%), Positives = 132/276 (47%)
Query: 34 GPSSSTNSINFI----PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIK 88
GP S +S N PR YQL++ AK+ +NTI TG GKT +++++ + +
Sbjct: 228 GPPSEASSNNLHSPLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP 287
Query: 89 SNGFKKLIIFLAPTVHLVHQQYDVIRVHTD---FEVEEYYGAKGVDEWDSQCWQKEINKN 145
G K ++F A + + QQ V + + + + GA DS Q I N
Sbjct: 288 C-GQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATS----DSVSVQHIIEDN 342
Query: 146 DVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HK----SDN 199
D++++TPQIL++ L A SL + ++ DECH+ + NHPY +IM + HK D
Sbjct: 343 DIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 402
Query: 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIEDKT-EME--VFVP---S 252
P+V G+TAS V +A + I +L + LD+ V T+ D E+E V+ P S
Sbjct: 403 LPQVVGLTASVGVGDA-KTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKIS 461
Query: 253 AKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKL 288
K + R + K S L + E L KL
Sbjct: 462 RKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKL 497
Score = 158 (60.7 bits), Expect = 5.6e-27, Sum P(2) = 5.6e-27
Identities = 43/137 (31%), Positives = 71/137 (51%)
Query: 398 KLHEL-LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS--TTS 454
KL +L L L + + I+FV+ +++++++ P L+ L LTG T
Sbjct: 611 KLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNR 670
Query: 455 VDALTPKVQKEVLESFRG-GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
+T QK VLE+FR G N+L AT V +EG+ + C+ VI ++ V IQ+RG
Sbjct: 671 ATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRG 730
Query: 514 RARQHNSQFILMLERSE 530
R R +S+ L+ ++
Sbjct: 731 RGRARDSKCFLLTSSAD 747
>UNIPROTKB|D4A8D9 [details] [associations]
symbol:Ddx58 "Protein Ddx58" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR007087
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00028
PROSITE:PS51194 SMART:SM00490 RGD:1309460 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 IPI:IPI00952196
Ensembl:ENSRNOT00000065299 ArrayExpress:D4A8D9 Uniprot:D4A8D9
Length = 704
Score = 339 (124.4 bits), Expect = 7.0e-27, P = 7.0e-27
Identities = 135/521 (25%), Positives = 237/521 (45%)
Query: 35 PSSSTNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK 93
P++S + + PR YQL++ AK+ +NT+ TG GKT +++++ + + +G K
Sbjct: 190 PNNSHSPLK--PRNYQLELALPAKKGKNTVICAPTGCGKTFVSLLICEHHLKNFP-HGQK 246
Query: 94 KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
++F A + + QQ V + + G G D+ Q I ND++++TPQ
Sbjct: 247 GKVVFFANQIPVYEQQATVFSRYFERFGYNVAGISGATA-DNVSVQHIIENNDIVILTPQ 305
Query: 154 ILLDALRK-AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HK----SDNKPKVFGMT 207
IL+++L A SL + ++ DECH+ + +HPY +IM + HK D P+V G+T
Sbjct: 306 ILVNSLNNGAIPSLSVFTLMIFDECHNTSKHHPYNQIMFRYLDHKLGGSPDPLPQVIGLT 365
Query: 208 ASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIEDKTE-ME--VFVP---SAKESCRFY 260
AS V G + + I +L + LD+ V T+ D E +E V+ P S K R
Sbjct: 366 AS--VGVGDAKTEEAMLHICKLCAALDASVIATVRDNVEELEQXVYKPQKISRKVESRAS 423
Query: 261 DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYC 320
+ K S L + E L K Q+ + K++ + +
Sbjct: 424 NTFKCIISQLMREAERLAKNVSEELGKF--FQIQNREFGTQKYEQWIVAVHKACTVFMPD 481
Query: 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ-CKYFLEEVLHVIGSALPLADKIF 379
DE IC +A+ + + K + I + ++ +L+ H + A +
Sbjct: 482 KDEESRIC--KALFLYTSHLRKYNDALIISEDAQMKDALNYLKAFFHDVREAAFDETEQD 539
Query: 380 LDFGFDYSKAVDLGYIST-------KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432
L F+ K +L +S KL +L + + + I+FV+ +++
Sbjct: 540 LTRRFE-EKVEELENVSREPSNENRKLRDLYLILQEYHLKPETKTILFVKTRALVDALKK 598
Query: 433 FVKKVPFLTHLTVAYLTGS--TTSVDALTPKVQKEVLESFRGGKVN-LLFATDVIEEGMH 489
++++ P L+ L LTG T +T QK VLE+FR N +L AT V +E +
Sbjct: 599 WIEENPALSFLKPGILTGRGRTNQATGMTLPAQKCVLEAFRANADNNILIATSVADERID 658
Query: 490 VPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSE 530
+ C+ VI ++ V + IQ+RGR R +S+ L+ ++
Sbjct: 659 IAQCNLVILYEYVGNVINMIQTRGRGRARDSKCFLLTSSAD 699
>RGD|1309460 [details] [associations]
symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 58"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR007087 InterPro:IPR011545 InterPro:IPR021673
Pfam:PF00270 Pfam:PF00271 Pfam:PF11648 PROSITE:PS00028
PROSITE:PS51194 SMART:SM00490 RGD:1309460 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 IPI:IPI00780835
Ensembl:ENSRNOT00000060764 UCSC:RGD:1309460 ArrayExpress:D4ADT6
Uniprot:D4ADT6
Length = 922
Score = 339 (124.4 bits), Expect = 1.3e-26, P = 1.3e-26
Identities = 135/521 (25%), Positives = 237/521 (45%)
Query: 35 PSSSTNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK 93
P++S + + PR YQL++ AK+ +NT+ TG GKT +++++ + + +G K
Sbjct: 234 PNNSHSPLK--PRNYQLELALPAKKGKNTVICAPTGCGKTFVSLLICEHHLKNFP-HGQK 290
Query: 94 KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
++F A + + QQ V + + G G D+ Q I ND++++TPQ
Sbjct: 291 GKVVFFANQIPVYEQQATVFSRYFERFGYNVAGISGATA-DNVSVQHIIENNDIVILTPQ 349
Query: 154 ILLDALRK-AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HK----SDNKPKVFGMT 207
IL+++L A SL + ++ DECH+ + +HPY +IM + HK D P+V G+T
Sbjct: 350 ILVNSLNNGAIPSLSVFTLMIFDECHNTSKHHPYNQIMFRYLDHKLGGSPDPLPQVIGLT 409
Query: 208 ASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIEDKTE-ME--VFVP---SAKESCRFY 260
AS V G + + I +L + LD+ V T+ D E +E V+ P S K R
Sbjct: 410 AS--VGVGDAKTEEAMLHICKLCAALDASVIATVRDNVEELEQXVYKPQKISRKVESRAS 467
Query: 261 DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYC 320
+ K S L + E L K Q+ + K++ + +
Sbjct: 468 NTFKCIISQLMREAERLAKNVSEELGKF--FQIQNREFGTQKYEQWIVAVHKACTVFMPD 525
Query: 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ-CKYFLEEVLHVIGSALPLADKIF 379
DE IC +A+ + + K + I + ++ +L+ H + A +
Sbjct: 526 KDEESRIC--KALFLYTSHLRKYNDALIISEDAQMKDALNYLKAFFHDVREAAFDETEQD 583
Query: 380 LDFGFDYSKAVDLGYIST-------KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432
L F+ K +L +S KL +L + + + I+FV+ +++
Sbjct: 584 LTRRFE-EKVEELENVSREPSNENRKLRDLYLILQEYHLKPETKTILFVKTRALVDALKK 642
Query: 433 FVKKVPFLTHLTVAYLTGS--TTSVDALTPKVQKEVLESFRGGKVN-LLFATDVIEEGMH 489
++++ P L+ L LTG T +T QK VLE+FR N +L AT V +E +
Sbjct: 643 WIEENPALSFLKPGILTGRGRTNQATGMTLPAQKCVLEAFRANADNNILIATSVADERID 702
Query: 490 VPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSE 530
+ C+ VI ++ V + IQ+RGR R +S+ L+ ++
Sbjct: 703 IAQCNLVILYEYVGNVINMIQTRGRGRARDSKCFLLTSSAD 743
>DICTYBASE|DDB_G0294407 [details] [associations]
symbol:helF "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0040029 "regulation of gene
expression, epigenetic" evidence=IMP] [GO:0031149 "sorocarp stalk
cell differentiation" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00358 SMART:SM00490
InterPro:IPR014720 dictyBase:DDB_G0294407 GO:GO:0005524
GO:GO:0005634 Gene3D:3.30.160.20 GenomeReviews:CM000151_GR
EMBL:AAFI02000008 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0040029 GO:GO:0008026 GO:GO:0003724
GO:GO:0031149 eggNOG:COG1111 RefSeq:XP_001134628.1
ProteinModelPortal:Q86L44 EnsemblProtists:DDB0233379 GeneID:8618629
KEGG:ddi:DDB_G0294407 OMA:ANIQSRG ProtClustDB:CLSZ2733552
Uniprot:Q86L44
Length = 837
Score = 330 (121.2 bits), Expect = 1.0e-25, P = 1.0e-25
Identities = 155/581 (26%), Positives = 252/581 (43%)
Query: 33 DGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGF 92
DG N PR YQ +++ + ++ I L TG GKT+I+ ++IK + Q S
Sbjct: 221 DGKPMEMNKSK--PRDYQCELYRKSMEKDIICCLPTGLGKTLISCLVIKKMKQLNPS--- 275
Query: 93 KKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTP 152
K I+F+ + LV QQ DVI T +V +G E K+ + DVLV+
Sbjct: 276 -KQIVFIVDRIPLVIQQSDVIETETGLKVLSAHG-----ETFKPVQLKQ--RFDVLVVIG 327
Query: 153 QILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN--KPKVFGMTASP 210
+ L L++ C IVIDE HH H + K++++ + PK+ G+TASP
Sbjct: 328 DLFNKLLSNGDLNILSFCLIVIDEAHHIVKEHSFAKLLRDKLNTIPEICHPKILGLTASP 387
Query: 211 VVRKGVSS---AMDCEGQISELE---STLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSK 264
+K + ++ ++S E T S + I K + +P+ K
Sbjct: 388 AGKKDFFNTLLSLKLISKVSRCEIIKPTNQSIIPYINQKNIKIIPIPTNNLERHSIQILK 447
Query: 265 FCGSDLKGKLEVSWSKFDASLSKLQGSQLNCY--------KDMDDKHKTLRKQLSDYHAK 316
S K L + FD+ S + + L + ++ L K LS + K
Sbjct: 448 DLISKYKPNLSNNQELFDSVTSVIDSNTLKGLGVGGGGGGSNSSTQNHNLNKFLSSFFEK 507
Query: 317 ILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLAD 376
I D + A+ + L EE LQ E+L ++ S LP +
Sbjct: 508 IN---DFINFKMFGSAIPVGLNLKSFLIEEISNIDDVELQ-----SEILAMVHS-LPCDE 558
Query: 377 KIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVE---- 431
+I + ++ +KL LQ+ L KS + IIFV+ R +A KV
Sbjct: 559 EI--------ADSI------SKLEIALQI-LDEKKSDDLKAIIFVKTRDVAKKVYSLLDQ 603
Query: 432 -RFVKKVPFLT-HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMH 489
R + F+ +L V + GS + ++ QK+ +E FR + N++ AT V+EEG
Sbjct: 604 LRMGDRFSFIKPNLVVGH--GS---IGGMSISSQKKAIEEFRSDQCNVIVATSVVEEGFD 658
Query: 490 VPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSE-RSVTDTALSRDPEACFLK 548
VP C+ VIR D P TV++ IQSRGR R +S F +++ + R ++ E +
Sbjct: 659 VPECNIVIRLDPPTTVTANIQSRGRLRNRDSYFYGIVKVDDPREDNIYEFFKNQERYLEE 718
Query: 549 ACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYY 589
A ++KT + + TT VN + E + ++ Y+
Sbjct: 719 AINFLKTGELPISLKQQNYTTQ--VNQVD---EEMDTNSYF 754
>UNIPROTKB|I3LGW3 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00510000046789 OMA:KCKAFAC
EMBL:FP340205 Ensembl:ENSSSCT00000026775 Uniprot:I3LGW3
Length = 960
Score = 244 (91.0 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 74/244 (30%), Positives = 123/244 (50%)
Query: 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
PR YQL++ A+ +NTI TG GKT +++++ + + G K ++F A +
Sbjct: 242 PRKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ-GRKGKVVFFAIQLP 300
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
+ QQ V H + + G G D+ C ++ + ND++++TPQIL++ L +
Sbjct: 301 VYEQQKSVFSKHFERLGYKVAGISGATS-DTVCVEQIVENNDIIILTPQILVNCLTNGTI 359
Query: 165 -SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSS 218
SL + ++ DECH+ + HPY IM + + SD+ P+V G+TAS V +
Sbjct: 360 PSLSVFTLMIFDECHNTSKQHPYNVIMFNYLDRKLGGSSDSLPQVIGLTASVGVGDAKNK 419
Query: 219 AMDCEGQISELESTLDSQVF-TIEDKTE-ME--VFVPSA---KESCRFYDQSKFCGSDLK 271
A E I +L ++LD+ V T+ D E +E V+ P K R D+ K S L
Sbjct: 420 AEATE-YICKLCASLDTSVIATVRDNLEELEEVVYKPQKFFRKVELRTTDRFKCIISQLM 478
Query: 272 GKLE 275
++E
Sbjct: 479 MEIE 482
Score = 161 (61.7 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 62/251 (24%), Positives = 112/251 (44%)
Query: 387 SKAVDLGYISTKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTV 445
S ++D + KL +L + + + + I+FV+ +++++K+ P L+ L
Sbjct: 603 SISIDPSNENPKLRDLCFILQEEYHLNPETRTILFVKTRALVDALKKWIKENPKLSFLKP 662
Query: 446 AYLTG--STTSVDALTPKVQKEVLESFRGGKVN-LLFATDVIEEGMHVPNCSYVIRFDLP 502
+ LTG T +T QK VL++FR K N +L T V +EG+ + C+ VI ++
Sbjct: 663 SILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEGIDIAQCNLVILYEYV 722
Query: 503 KTVSSYIQSRGRARQHNSQFILMLERSERSVTDTALSRDPEACFLKACTYVKT--KSYIV 560
V IQ+RGR R S+ L+ ++ + ++ E A ++T ++
Sbjct: 723 GNVIKMIQTRGRGRARGSKCFLLTANADL-IDKEKMNMYKEEMMNGAILILQTWDEAVFK 781
Query: 561 ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIV 620
E + + E +P K T K + K A Y ++ + N F T+V
Sbjct: 782 EKIHQIQIREKIIRDNQGKPEPVPDKK--TKKLLCKKCKAFACYTADIRMVENCHF-TVV 838
Query: 621 GPTSRNKNLSK 631
G R + +SK
Sbjct: 839 GDAFRERFVSK 849
Score = 55 (24.4 bits), Expect = 7.0e-15, Sum P(4) = 7.0e-15
Identities = 29/126 (23%), Positives = 49/126 (38%)
Query: 832 WSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSP---CRTSPCKTGCHGKDVI--HLANG 886
W NP S F+K G + N N G + P C +T K +I +A+
Sbjct: 650 WIKENPKLS---FLKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADE 706
Query: 887 SVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESP----FDGNTDDDSKTFVNYFSEKY- 941
+D ++V+L + G + +++ A N D K +N + E+
Sbjct: 707 GIDIAQC-NLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTANADLIDKEKMNMYKEEMM 765
Query: 942 -GIVLI 946
G +LI
Sbjct: 766 NGAILI 771
Score = 42 (19.8 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 340 VLKAQEECEIYR-----QSSLQCKYFLEEVLH--VIGSALPLADKIFLDFGFDYSK 388
++K Q+EC +++ + S CK + H + AL + + + DY K
Sbjct: 517 IVKVQKECAVFQMPDKDKESRICKALFSYMSHLRIYNDALIINEHARMKDALDYLK 572
Score = 37 (18.1 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 1540 FVSKITLHIPEFGNVE 1555
FVSK+ FGN+E
Sbjct: 846 FVSKLHPKPKSFGNIE 861
>ZFIN|ZDB-GENE-120612-3 [details] [associations]
symbol:dhx58 "DEXH (Asp-Glu-X-His) box polypeptide
58" species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-120612-3 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:79132 KO:K12649 EMBL:JF970230 RefSeq:NP_001244086.1
UniGene:Dr.93597 GeneID:100148871 KEGG:dre:100148871 Uniprot:G3GMG3
Length = 679
Score = 319 (117.4 bits), Expect = 9.5e-25, P = 9.5e-25
Identities = 141/511 (27%), Positives = 229/511 (44%)
Query: 47 RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
R YQ +V + A R N+I L TG GKT AV + + + K+N K+ + L VHL
Sbjct: 6 RPYQEEVVQAALRGENSIIWLPTGGGKTRAAVYVAEKHLET-KANA--KVAV-LVNKVHL 61
Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGV--DEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
V Q Y ++ + + Y K + D + + + + +D+++ T QIL +AL
Sbjct: 62 VDQHY--MKEFGHY-LRHKYRIKAISGDSSEKDFFGRLVRVSDLVICTAQILENALNNMD 118
Query: 164 LS--LDIVCF--IVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKG 215
++I F +VIDECHH Y KIM + K K P++ G+TASP G
Sbjct: 119 EDKHVEITDFTLLVIDECHHTNKESVYNKIMWRYVEKKVRKEGRLPQILGLTASPGT--G 176
Query: 216 VSSAMD-CEGQISELESTLDSQVFTIEDKTEM-EVFVPSAKESCRFYDQSKFCGSDLKGK 273
+ ++D + ++ + LDS++ + ++ T M + FVP K+ YD + D G
Sbjct: 177 GNKSLDKAVEHVLQICANLDSKIVSTKNYTPMLQNFVPKPKKE---YDIVERRDKDPFG- 232
Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDK-HKTLRKQ-LSDYHAKILYCLDELGLICAYE 331
L+ L ++ M + LR+ +Y A ++ L++ G+
Sbjct: 233 ------------DHLKSMMLMIHEFMPPTVSRGLRELGTQEYEADVVE-LEKAGVKVNNR 279
Query: 332 AVKICLEKVLKAQEECEIYRQSSLQCKY-FLEEVLHVIGSALPLADKIFLDFGFDYSK-- 388
+ C + K + I + + LEE + S L IFL FD +
Sbjct: 280 LIAQCALHLRKYNDALLINDTIRMVDAFRVLEEFYNSRSSKLLDGTDIFLQGLFDENSLE 339
Query: 389 ----AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL--TH 442
A D Y + KL +L L + T IIF + + +VK L +
Sbjct: 340 LKHLASDARYENPKLAQLQSRLLEEFQDTNSRGIIFSKTRRGTHCLNDWVKTNRELQRVN 399
Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
+T LTG+ + +T QK V+ FR G +NLL +T V EEG+ +P C+ V+R+ L
Sbjct: 400 ITAGILTGAGNGANNMTQTEQKSVISHFRQGYLNLLISTSVAEEGLDIPECNLVVRYGLL 459
Query: 503 KTVSSYIQSRGRARQHNSQFILMLERSERSV 533
+ Q+ GRAR NS + ++ + R V
Sbjct: 460 TNEIAQQQASGRARASNSVYSVVADVGGREV 490
>UNIPROTKB|Q9GLV6 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9823 "Sus scrofa" [GO:0032587 "ruffle membrane"
evidence=ISS] [GO:0015629 "actin cytoskeleton" evidence=ISS]
[GO:0005923 "tight junction" evidence=ISS] [GO:0003727
"single-stranded RNA binding" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] [GO:0030334 "regulation
of cell migration" evidence=ISS] [GO:0039529 "RIG-I signaling
pathway" evidence=ISS] [GO:0045087 "innate immune response"
evidence=ISS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=ISS] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=ISS] [GO:0002230 "positive
regulation of defense response to virus by host" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR021673
Pfam:PF00270 Pfam:PF00271 Pfam:PF11648 PROSITE:PS50209
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0015629 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 GO:GO:0002230 GO:GO:0030334 GO:GO:0005923
GO:GO:0032587 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0032727 GO:GO:0032728
HOVERGEN:HBG052325 GO:GO:0039529 EMBL:AF181119 UniGene:Ssc.15885
ProteinModelPortal:Q9GLV6 SMR:Q9GLV6 Uniprot:Q9GLV6
Length = 940
Score = 239 (89.2 bits), Expect = 1.6e-24, Sum P(4) = 1.6e-24
Identities = 73/244 (29%), Positives = 123/244 (50%)
Query: 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
PR YQL++ A+ +NTI TG GKT +++++ + + G K ++F A +
Sbjct: 241 PRKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFP-RGRKGKVVFFAIQLP 299
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
+ QQ V H + + G G D+ C ++ + +D++++TPQIL++ L +
Sbjct: 300 VYEQQKSVFSKHFERLGYKVAGISGATS-DTVCVEQIVENSDIIILTPQILVNCLTNGTI 358
Query: 165 -SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSS 218
SL + ++ DECH+ + HPY IM + + SD+ P+V G+TAS V +
Sbjct: 359 PSLSVFTLMIFDECHNTSKQHPYNVIMFSYLDRKLGGSSDSLPQVIGLTASVGVGDAKNK 418
Query: 219 AMDCEGQISELESTLDSQVF-TIEDKTE-ME--VFVPSA---KESCRFYDQSKFCGSDLK 271
A E I +L ++LD+ V T+ D E +E V+ P K R D+ K S L
Sbjct: 419 AEATE-YICKLCASLDTSVIATVRDNLEELEEVVYKPQKFFRKVELRTTDRFKCIISQLM 477
Query: 272 GKLE 275
++E
Sbjct: 478 MEIE 481
Score = 155 (59.6 bits), Expect = 1.6e-24, Sum P(4) = 1.6e-24
Identities = 61/251 (24%), Positives = 111/251 (44%)
Query: 387 SKAVDLGYISTKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTV 445
S ++D + KL +L + + + + I+FV+ +++++K+ P L+ L
Sbjct: 602 SISIDPSNENPKLRDLCFILQEEYHLNPETRTILFVKTRALVDALKKWIKENPKLSFLKP 661
Query: 446 AYLTG--STTSVDALTPKVQKEVLESFRGGKVN-LLFATDVIEEGMHVPNCSYVIRFDLP 502
+ LTG T +T QK VL++FR K N +L T V +EG+ + C+ VI ++
Sbjct: 662 SILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEGIDIAQCNLVILYEYV 721
Query: 503 KTVSSYIQSRGRARQHNSQFILMLERSERSVTDTALSRDPEACFLKACTYVKT--KSYIV 560
V IQ+RGR R S+ L+ ++ + ++ E A ++T ++
Sbjct: 722 GNVIKMIQTRGRGRARGSKCFLLTANADL-IDKEKMNMYKEEMMNGAILILQTWDEAVFK 780
Query: 561 ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIV 620
E + + E +P K T K + K A Y ++ + F T+V
Sbjct: 781 EKIHQIQIREKIIRDNQGKPEPVPDKK--TKKLLCKKCKAFACYTADIRMVEKCHF-TVV 837
Query: 621 GPTSRNKNLSK 631
G R + +SK
Sbjct: 838 GDAFRERFVSK 848
Score = 55 (24.4 bits), Expect = 2.1e-14, Sum P(4) = 2.1e-14
Identities = 29/126 (23%), Positives = 49/126 (38%)
Query: 832 WSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSP---CRTSPCKTGCHGKDVI--HLANG 886
W NP S F+K G + N N G + P C +T K +I +A+
Sbjct: 649 WIKENPKLS---FLKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADE 705
Query: 887 SVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESP----FDGNTDDDSKTFVNYFSEKY- 941
+D ++V+L + G + +++ A N D K +N + E+
Sbjct: 706 GIDIAQC-NLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTANADLIDKEKMNMYKEEMM 764
Query: 942 -GIVLI 946
G +LI
Sbjct: 765 NGAILI 770
Score = 42 (19.8 bits), Expect = 1.6e-24, Sum P(4) = 1.6e-24
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 340 VLKAQEECEIYR-----QSSLQCKYFLEEVLH--VIGSALPLADKIFLDFGFDYSK 388
++K Q+EC +++ + S CK + H + AL + + + DY K
Sbjct: 516 IVKVQKECAVFQMPDKDKESRICKALFSYMSHLRIYNDALIINEHARMKDALDYLK 571
Score = 37 (18.1 bits), Expect = 1.6e-24, Sum P(4) = 1.6e-24
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 1540 FVSKITLHIPEFGNVE 1555
FVSK+ FGN+E
Sbjct: 845 FVSKLHPKPKSFGNIE 860
Score = 37 (18.1 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 552 YVKTKSYIVESTGASVTT 569
++K +S++VE V T
Sbjct: 889 FIKIESFVVEDIATGVQT 906
>UNIPROTKB|B3KRG4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 UniGene:Hs.87889 HGNC:HGNC:17098 ChiTaRS:DICER1
EMBL:AK091513 IPI:IPI01025259 SMR:B3KRG4 STRING:B3KRG4
Ensembl:ENST00000556045 UCSC:uc001ydy.1 HOVERGEN:HBG092134
Uniprot:B3KRG4
Length = 820
Score = 211 (79.3 bits), Expect = 7.9e-24, Sum P(5) = 7.9e-24
Identities = 49/125 (39%), Positives = 70/125 (56%)
Query: 1013 LLPSVMQRLESLM--LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLG 1070
++P ++ L + S+ I SR LIL+ALT + F++ERLE+LG
Sbjct: 158 VMPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLG 217
Query: 1071 DSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-R 1129
DS LK+A++ +LF TYP HEG+LS RS V N L++LG + L + S FDP
Sbjct: 218 DSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVN 277
Query: 1130 WVAPG 1134
W+ PG
Sbjct: 278 WLPPG 282
Score = 114 (45.2 bits), Expect = 7.9e-24, Sum P(5) = 7.9e-24
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350
E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++
Sbjct: 692 EDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLI 740
Score = 80 (33.2 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHE-GQLSARRSWAVCNSTL 1107
+RLE LGD++L Y ++ HL+ P++H G L+ RS A+ N+T+
Sbjct: 600 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRS-ALVNNTI 642
Score = 78 (32.5 bits), Expect = 7.9e-24, Sum P(5) = 7.9e-24
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVK 1295
I+ ++ E KI Y F K L +A THAS + + Y+ L+ +L IT+++
Sbjct: 561 ISGFENFEKKINYRFKNKAYLLQAFTHASYH-YNTITDCYQRLEFLGDAILDYLITKHLY 619
Query: 1296 SFPK---PGETTD 1305
P+ PG TD
Sbjct: 620 EDPRQHSPGVLTD 632
Score = 67 (28.6 bits), Expect = 7.9e-24, Sum P(5) = 7.9e-24
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1178 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1212
+ K+IADC EAL+G Y G AA + LG+
Sbjct: 452 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGL 486
Score = 46 (21.3 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 1277 KHLQHCSTLLLSQITEYVKSFP-KPGETTDSGPSMKAPK--ALGDL 1319
+H++ +L+ +VK P TTDS K PK +LG +
Sbjct: 346 EHIRFIDNMLMGS-GAFVKKISLSPFSTTDSAYEWKMPKKSSLGSM 390
Score = 37 (18.1 bits), Expect = 7.9e-24, Sum P(5) = 7.9e-24
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 289 QGSQLNCYK 297
QG+QLN YK
Sbjct: 96 QGNQLNYYK 104
>UNIPROTKB|E2RMV6 [details] [associations]
symbol:DDX58 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00510000046789 OMA:KCKAFAC EMBL:AAEX03007933
Ensembl:ENSCAFT00000002841 Uniprot:E2RMV6
Length = 929
Score = 236 (88.1 bits), Expect = 8.1e-24, Sum P(2) = 8.1e-24
Identities = 74/244 (30%), Positives = 123/244 (50%)
Query: 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
PR YQL++ AK +NTI TG GKT +A+++ + + G K I+F A +
Sbjct: 242 PRNYQLELALPAKEGKNTIICAPTGCGKTFVALLICEHHLKKFPQ-GQKGKIVFFAIQIP 300
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
+ QQ V + + + G G ++ ++ + ND++V+TPQIL++ LR +
Sbjct: 301 VYEQQNSVFSKYFERLGYKVAGISGATS-ENISVEQIVENNDIIVLTPQILVNCLRNGTI 359
Query: 165 -SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSS 218
SL + ++ DECH+ + +HPY IM + + SD P+V G+TAS + +
Sbjct: 360 PSLSVFTLMIFDECHNTSKHHPYNMIMFNYLDQKLGGSSDPLPQVVGLTASVGIGDA-KN 418
Query: 219 AMDCEGQISELESTLDSQVF-TIEDKTE-ME--VFVPSA---KESCRFYDQSKFCGSDLK 271
M+ I +L ++LD+ V T++D E +E V+ P K R D+ K S L
Sbjct: 419 TMEAMEYICKLCASLDTSVIATVKDNLEELEEIVYKPQKFFRKVESRTTDRFKCIISQLM 478
Query: 272 GKLE 275
+ E
Sbjct: 479 RETE 482
Score = 134 (52.2 bits), Expect = 8.1e-24, Sum P(2) = 8.1e-24
Identities = 40/148 (27%), Positives = 73/148 (49%)
Query: 387 SKAVDLGYISTKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTV 445
S ++DL + KL +L + + + + I+FV+ +++++++ L+ L
Sbjct: 603 SISMDLSNENPKLKDLSFILQEEYHLNPESRTILFVKTRALVDALKKWIEENSELSFLKP 662
Query: 446 AYLTG--STTSVDALTPKVQKEVLESFR-GGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
LTG T +T QK L++FR G +L AT V +EG+ + C+ VI ++
Sbjct: 663 GILTGRGKTNHNTGMTLPAQKCALDAFRTDGDKKILIATSVADEGIDIAQCNLVILYEYV 722
Query: 503 KTVSSYIQSRGRARQHNSQFILMLERSE 530
V IQ+RGR R S+ L+ ++
Sbjct: 723 GNVIRMIQTRGRGRARGSKCFLLTSNAD 750
Score = 55 (24.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 24/110 (21%), Positives = 44/110 (40%)
Query: 840 SVVEFIKEKSFLGAAQCNNNGGNSSP---CRTSPCKTGCHGKDVI--HLANGSVDAKNLK 894
S + F+K G + N+N G + P C +T K +I +A+ +D
Sbjct: 655 SELSFLKPGILTGRGKTNHNTGMTLPAQKCALDAFRTDGDKKILIATSVADEGIDIAQC- 713
Query: 895 DMVVLAIHTGRIYSIVEIVNNSSAESP----FDGNTDDDSKTFVNYFSEK 940
++V+L + G + +++ A N D K +N + EK
Sbjct: 714 NLVILYEYVGNVIRMIQTRGRGRARGSKCFLLTSNADVIKKEKLNIYKEK 763
>UNIPROTKB|F1MKU1 [details] [associations]
symbol:DDX58 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0042993 "positive regulation of transcription
factor import into nucleus" evidence=IEA] [GO:0042802 "identical
protein binding" evidence=IEA] [GO:0039529 "RIG-I signaling
pathway" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0032727 "positive
regulation of interferon-alpha production" evidence=IEA]
[GO:0032587 "ruffle membrane" evidence=IEA] [GO:0030334 "regulation
of cell migration" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0009597 "detection of virus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005923 "tight
junction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0002230 "positive
regulation of defense response to virus by host" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0015629 GO:GO:0008270 GO:GO:0003727 GO:GO:0045944
GO:GO:0045087 GO:GO:0002230 GO:GO:0030334 GO:GO:0005923
GO:GO:0003690 GO:GO:0032587 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0042993
GO:GO:0043330 GO:GO:0032727 GeneTree:ENSGT00510000046789
GO:GO:0032728 OMA:KCKAFAC GO:GO:0009597 GO:GO:0039529
EMBL:DAAA02021991 IPI:IPI00716102 Ensembl:ENSBTAT00000061377
Uniprot:F1MKU1
Length = 942
Score = 233 (87.1 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 74/244 (30%), Positives = 124/244 (50%)
Query: 46 PRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
PR YQL++ K +NTI TG GKT +++++ + + K+++F A V
Sbjct: 241 PRNYQLELALPAQKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGRKGKVVVF-AVQVP 299
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
L QQ V + + + G G + D+ ++ + ND++++TPQIL+++L+ +
Sbjct: 300 LYEQQKSVFSEYFERFGYKVSGISG-ETADNISVEQIVENNDIIILTPQILVNSLKDGTI 358
Query: 165 -SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSS 218
SL I ++ DECH+ +HPY IM + + SD+ P+V G+TAS V ++
Sbjct: 359 PSLSIFTLMIFDECHNTNKHHPYNMIMFHYLDQKLGGSSDSLPQVIGLTASVGVGDAKNT 418
Query: 219 AMDCEGQISELESTLDSQVFT-IEDKTE-ME--VFVPSA---KESCRFYDQSKFCGSDLK 271
A E I +L ++LD+ V T + D E +E V+ P K R D+ K S L
Sbjct: 419 AEATE-YICKLCASLDTAVVTTVRDNLEELEEVVYKPQKFFRKVESRTTDRFKRIISQLM 477
Query: 272 GKLE 275
+ E
Sbjct: 478 AETE 481
Score = 134 (52.2 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 34/116 (29%), Positives = 61/116 (52%)
Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS--TTSVDALTPKVQKEVLESFRGGKV 475
I+FV+ + ++ ++++ P L+ L LTG T +T QK L++FR +
Sbjct: 634 ILFVKTRALFQALKNWIEENPKLSFLKPGILTGRGRTNQTMGMTLPAQKCALDAFRTNRD 693
Query: 476 N-LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSE 530
+ +L AT V +EG+ + C+ VI ++ V IQ+RGR R S+ L+ ++
Sbjct: 694 SKILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAD 749
Score = 63 (27.2 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 22/92 (23%), Positives = 40/92 (43%)
Query: 271 KGKLEVSWSKF-DASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELG--LI 327
K KL + K + S+S+LQG +K+ + + K + D K+ +D+ L+
Sbjct: 753 KEKLNICQEKMMNESISRLQGWNEAVFKEKIRQIQIQEKLIRDSQGKVKPVVDKKNKKLL 812
Query: 328 CAYEAVKICLEKVLKAQEECE--IYRQSSLQC 357
C C ++ EEC + R + +C
Sbjct: 813 CGKCKTFACYTADIRVVEECHFTVVRDAFREC 844
Score = 44 (20.5 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 397 TKLHELLQLFLSFGKSTQVLC 417
TKLH + F SF K ++ C
Sbjct: 847 TKLHPRPKKFGSFDKKAKIFC 867
>UNIPROTKB|E1BJZ0 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0016925 "protein sumoylation" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0042981 "regulation
of apoptotic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0042981
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0045087
GO:GO:0009615 GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
SUPFAM:SSF47986 GO:GO:0043021 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016925 GeneTree:ENSGT00510000046789
CTD:64135 KO:K12647 OMA:KCGQAWG EMBL:DAAA02004416 IPI:IPI00702873
RefSeq:XP_002685384.1 RefSeq:XP_615590.2 UniGene:Bt.24098
Ensembl:ENSBTAT00000010703 GeneID:535490 KEGG:bta:535490
NextBio:20876765 Uniprot:E1BJZ0
Length = 1021
Score = 193 (73.0 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 76/260 (29%), Positives = 122/260 (46%)
Query: 23 MGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIK 81
MGS D V +S +N P YQL+V + A + +N I L TG+GKT +AV + K
Sbjct: 286 MGSDSDDENVAQRASPEPELNLRP--YQLEVAQPALEGKNIIICLPTGSGKTRVAVYIAK 343
Query: 82 DIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC---W 138
D K++ K+++ L V LV Q + + F ++++Y + D+Q +
Sbjct: 344 DHLDKKKASEHGKVMV-LVNKVPLVEQLFR--KEFKPF-LKKWYHVTRLSG-DTQLKITF 398
Query: 139 QKEINKNDVLVMTPQILLDALRKAF------LSLDIVCFIVIDECHHATGNHPYTKIMKE 192
+ + +DV++ T QIL ++L + + L I+IDECHH Y IM+
Sbjct: 399 PEVVKSHDVIISTAQILENSLLNSEEGEDDGIELSDFSLIIIDECHHTNKEAVYNNIMRR 458
Query: 193 FYH--------KSDNKP-----KVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFT 239
F K +NKP ++ G+TASP V G E I ++ + LD+ T
Sbjct: 459 FLKQKLKNNKLKKENKPVIPLPQIVGLTASPGVG-GAKKQAKAEEHILKICANLDA--VT 515
Query: 240 IED-KTEMEVFVPSAKESCR 258
I+ K + + KE C+
Sbjct: 516 IKTVKQNINLLKEQIKEPCK 535
Score = 166 (63.5 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 37/105 (35%), Positives = 56/105 (53%)
Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
G ++ +T QKEV+ FR GK+NLL AT V EEG+ + C+ VIR+ L + +
Sbjct: 753 GHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMV 812
Query: 510 QSRGRARQHNSQFILMLERSERSVTDTALSRDPEACFLKACTYVK 554
Q+RGRAR S ++L+ + V ++ E KA V+
Sbjct: 813 QARGRARADESTYVLVAQSGSGVVERETVNDFREKMMYKAIDRVQ 857
>ZFIN|ZDB-GENE-081104-438 [details] [associations]
symbol:ifih1 "interferon induced with helicase C
domain 1" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-081104-438
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 Gene3D:1.10.533.10
InterPro:IPR011029 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00510000046789 EMBL:AL954669 EMBL:CABZ01064081
EMBL:CABZ01064082 EMBL:CABZ01064083 IPI:IPI00492508
Ensembl:ENSDART00000003913 Uniprot:F1R4B9
Length = 997
Score = 178 (67.7 bits), Expect = 8.4e-21, Sum P(3) = 8.4e-21
Identities = 69/233 (29%), Positives = 109/233 (46%)
Query: 33 DGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNG 91
D S+S I R YQ++V A + +N I L TG+GKT +AV + K+ + + G
Sbjct: 286 DDSSASKREIKL--RDYQMEVARPALEEKNIIVCLPTGSGKTRVAVFITKEHLERKQRMG 343
Query: 92 FKKLIIFLAPTVHLVHQQY--DVIR-VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVL 148
K ++ L V LV Q Y + R + + VE GA + + + I KND++
Sbjct: 344 QKGKVVVLVNKVPLVEQHYKAEFGRFLKHQYSVERVSGASQL----KISFPQIIEKNDII 399
Query: 149 VMTPQILLDALRKAF------LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPK 202
+ T QIL ++L KA + L +VIDECHH Y IM Y K N+ +
Sbjct: 400 ICTAQILENSLAKAKNGDEDGIELSQFTLMVIDECHHTKKGGVYNHIMIR-YLKQKNRNQ 458
Query: 203 VF---GMTASPVVR-KGVSSAMDCEGQISE-------LESTLDSQVFTIEDKT 244
+ T P+ + G++++ G +S+ L+ + FTI+ KT
Sbjct: 459 LLKKQDKTLVPIPQILGLTASPGVGGAVSQQMAEEHILQICANLDAFTIKTKT 511
Score = 175 (66.7 bits), Expect = 8.4e-21, Sum P(3) = 8.4e-21
Identities = 46/139 (33%), Positives = 76/139 (54%)
Query: 394 YISTKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTV--AYLTG 450
Y + L +L + L F + IIF + ++A + +++++ P + V +YL G
Sbjct: 660 YENNNLAQLKTIILKEFSTREKARGIIFTQTRLSAIALCQWIEENPKFDEVGVRASYLIG 719
Query: 451 S--TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
+ V +T QK+VL+ FR G++NLL AT V EEG+ + C+ VIR+ L +
Sbjct: 720 GGDQSVVKPMTAAEQKDVLKRFRTGEINLLIATTVAEEGLDIAECNVVIRYCLVTNEVAM 779
Query: 509 IQSRGRARQHNSQFILMLE 527
IQ+RGR R +S + L+ E
Sbjct: 780 IQARGRGRAEDSSYTLVAE 798
Score = 41 (19.5 bits), Expect = 8.4e-21, Sum P(3) = 8.4e-21
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 781 FGKLFVKSKSSGSREFFLKRETNSL 805
F KLF+ +++ +E L ETN +
Sbjct: 899 FRKLFIVRENASLQERLLDYETNGV 923
>DICTYBASE|DDB_G0280963 [details] [associations]
symbol:rrpC "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR007855 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF05183 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280963 GO:GO:0005524
GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_640790.1
ProteinModelPortal:Q54UI6 STRING:Q54UI6 EnsemblProtists:DDB0216193
GeneID:8622843 KEGG:ddi:DDB_G0280963 InParanoid:Q54UI6 OMA:YELFNDY
Uniprot:Q54UI6
Length = 2285
Score = 224 (83.9 bits), Expect = 1.3e-20, Sum P(4) = 1.3e-20
Identities = 60/197 (30%), Positives = 97/197 (49%)
Query: 43 NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
N PR YQ F RNTI VL TG GKT+++++ + + + K+ +FL
Sbjct: 17 NVKPRQYQEDAFNQCISRNTILVLPTGTGKTLVSILTFLKMFEINEKKNNDKVALFLVNN 76
Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
+ L QQ + I+ TD V G D +Q + D++V TPQIL++ + K
Sbjct: 77 ILLGKQQTETIKNLTDKRVMVLSG-------DDLSFQTKKKNYDIVVATPQILMNLINKN 129
Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN-KPKVFGMTASPVVRKGVSSAMD 221
+ +D FI+ DE H+ATG Y KIM + +P++ G+TAS + +
Sbjct: 130 KIRIDNFHFIIFDEVHNATGLDNYCKIMSLVKNLDPPFRPRILGLTASVLKNASNYTTER 189
Query: 222 CEGQISELESTLDSQVF 238
+I +LE + S+++
Sbjct: 190 ATNEIKKLEDIMLSKIY 206
Score = 140 (54.3 bits), Expect = 1.3e-20, Sum P(4) = 1.3e-20
Identities = 36/119 (30%), Positives = 67/119 (56%)
Query: 414 QVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRG 472
++ CI+FVE R K++ + + ++ L + G + + Q+++++ F+
Sbjct: 394 KINCIVFVETRDTGKKLLNLLISEKE-ISKLNPKLIYGHNGR-NGMKHSEQQQIIQQFKE 451
Query: 473 GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSER 531
G +L +T+V+EEG+ + C+ VI FD ++ S IQ RGR R +S F L+LE+ +R
Sbjct: 452 GVCQVLVSTNVLEEGIDIKECNSVICFDNLYSLKSLIQRRGRDRTCSS-FTLILEQDQR 509
Score = 66 (28.3 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 47/202 (23%), Positives = 83/202 (41%)
Query: 380 LDFGFDYSK-AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438
L+F F K +D S +++ L+++ S ++ +E I ++ K
Sbjct: 1987 LEFEFKKIKFIIDFNSNSWYQSKVISLYITKHPSLVPTLLVIIEHIKNISLLLNSNKNTT 2046
Query: 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL--LFATDVIEEGMHVPNCSYV 496
T T T +TT++ KE +E+F + L LF IE G+
Sbjct: 2047 TTTTTTTTSTTTTTTTISYNNNNNIKEKIENFSISPIGLVILFIRYAIENGLIKEFEESD 2106
Query: 497 IRFDLPKTVSSYIQSRGRARQHNSQFILMLERSERSVTDTALS--RDPEACFLKACTYVK 554
I F+L ++ I S + + +L +E E +D L R FL Y K
Sbjct: 2107 IEFELSNN-NNNIYS-----YEDLKDLLKIE-CEVGQSDNLLGFYRYYSEIFLLG-VYSK 2158
Query: 555 TKSYIVESTG-ASVTTDSSVNL 575
+S+ ++S G +S+ D+ V +
Sbjct: 2159 KESFKLKSFGKSSIGVDNEVTI 2180
Score = 45 (20.9 bits), Expect = 1.3e-20, Sum P(4) = 1.3e-20
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 914 NNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLL 953
N+S ++S DG++D D+ + + S++ + + G PL+
Sbjct: 637 NDSDSDSDSDGDSDSDNNSNSDNNSDRDEAIKLKNG-PLV 675
Score = 45 (20.9 bits), Expect = 1.3e-20, Sum P(4) = 1.3e-20
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 1207 MKWLGIDAD-LEVSLV--DDCIT-RASLRSYVP-RINEIKDIESKIGYEFT 1252
+ W GI + L++ V + C+ +L+S V +I I DI SK G+ FT
Sbjct: 1180 LNWSGIKYESLQMIKVFRNLCLLFSTTLKSQVIYKIEMIPDIISKEGHNFT 1230
Score = 44 (20.5 bits), Expect = 1.6e-20, Sum P(4) = 1.6e-20
Identities = 11/57 (19%), Positives = 23/57 (40%)
Query: 1194 YYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYE 1250
++ G++ +D D + D + R L ++ P + E + + IG E
Sbjct: 1477 FFSTNGMVPNFKQCSGSDLDGDRYFVIYDQTLIREDLITHEPYLGEEQTVNPLIGEE 1533
Score = 37 (18.1 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 1256 LLQEAITHASVQEFYCYQNLY 1276
+L+E I C+ NLY
Sbjct: 462 VLEEGIDIKECNSVICFDNLY 482
>UNIPROTKB|I3LJY5 [details] [associations]
symbol:LOC100737466 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00510000046789 Ensembl:ENSSSCT00000022741 OMA:CKRAVDE
Uniprot:I3LJY5
Length = 319
Score = 243 (90.6 bits), Expect = 4.8e-19, P = 4.8e-19
Identities = 66/222 (29%), Positives = 113/222 (50%)
Query: 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
PR YQL++ A+ +NTI TG GKT +++++ + + G K ++F A +
Sbjct: 94 PRKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFP-RGRKGKVVFFAIQLP 152
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
+ QQ V H + + G G D+ C ++ + ND++++TPQIL++ L +
Sbjct: 153 VYEQQKSVFSKHFERLGYKVAGISGATS-DTVCVEQIVENNDIIILTPQILVNCLTNGTI 211
Query: 165 -SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVSS 218
SL + ++ DECH+ + HPY IM + + SD+ P+V G+TAS V +
Sbjct: 212 PSLSVFTLMIFDECHNTSKQHPYNVIMFNYLDRKLGGSSDSLPQVIGLTASVGVGDAKNK 271
Query: 219 AMDCEGQISELESTLDSQVF-TIEDKTEMEVFVPSAKESCRF 259
A E I +L ++LD+ V T+ D E V + C++
Sbjct: 272 AEATE-YICKLCASLDTSVIATVRDNLEELEEVVYKPQKCKW 312
>UNIPROTKB|Q96C10 [details] [associations]
symbol:DHX58 "Probable ATP-dependent RNA helicase DHX58"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0039536 "negative regulation of RIG-I signaling
pathway" evidence=IMP;IDA] [GO:0003725 "double-stranded RNA
binding" evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0045088 "regulation of innate immune response"
evidence=IDA] [GO:0039534 "negative regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:0032480 "negative regulation of type I
interferon production" evidence=IDA] [GO:0045824 "negative
regulation of innate immune response" evidence=IDA] [GO:0032481
"positive regulation of type I interferon production" evidence=ISS]
[GO:0009615 "response to virus" evidence=ISS] [GO:1900245 "positive
regulation of MDA-5 signaling pathway" evidence=ISS] [GO:1900246
"positive regulation of RIG-I signaling pathway" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0019048 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0051607
GO:GO:0009615 GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534
GO:GO:0039536 GO:GO:0045824 eggNOG:COG1111 GO:GO:1900245
GO:GO:1900246 EMBL:AK021416 EMBL:BC014949 IPI:IPI00303746
RefSeq:NP_077024.2 UniGene:Hs.55918 PDB:2RQA PDB:2W4R PDB:3EQT
PDBsum:2RQA PDBsum:2W4R PDBsum:3EQT ProteinModelPortal:Q96C10
SMR:Q96C10 IntAct:Q96C10 MINT:MINT-1460040 STRING:Q96C10
PhosphoSite:Q96C10 DMDM:50401123 PaxDb:Q96C10 PRIDE:Q96C10
DNASU:79132 Ensembl:ENST00000251642 Ensembl:ENST00000563880
GeneID:79132 KEGG:hsa:79132 UCSC:uc002hyw.3 CTD:79132
GeneCards:GC17M040255 HGNC:HGNC:29517 HPA:HPA018670 HPA:HPA019570
MIM:608588 neXtProt:NX_Q96C10 PharmGKB:PA162383566
HOGENOM:HOG000230992 HOVERGEN:HBG106019 InParanoid:Q96C10 KO:K12649
OMA:ELRPYQW OrthoDB:EOG44QT15 ChiTaRS:DHX58
EvolutionaryTrace:Q96C10 GenomeRNAi:79132 NextBio:67993
ArrayExpress:Q96C10 Bgee:Q96C10 CleanEx:HS_DHX58
Genevestigator:Q96C10 GermOnline:ENSG00000108771 GO:GO:0032481
Uniprot:Q96C10
Length = 678
Score = 265 (98.3 bits), Expect = 6.9e-19, P = 6.9e-19
Identities = 135/541 (24%), Positives = 237/541 (43%)
Query: 47 RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
R YQ +V A + +N I L TGAGKT A + K + + +G K ++ L VHL
Sbjct: 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59
Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
V Q + R D + V G G +D+L+ T ++L AL
Sbjct: 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHL----ARCHDLLICTAELLQMALTSPE 115
Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH----KSDNKPKVFGMTASPVVRKG 215
+ + L + IV+DECHH + Y IM ++ ++ P+V G+TASP G
Sbjct: 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP----G 171
Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
A +G I+ +L + LD+ + + +++ C+ Y+ D G
Sbjct: 172 TGGASKLDGAINHVLQLCANLDTWCI-MSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFG 230
Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
L L KL Q++ + +M + + Q+ Y +++ L E + +
Sbjct: 231 DL----------LKKLM-DQIHDHLEMPELSRKFGTQM--YEQQVVK-LSEAAALAGLQE 276
Query: 333 VKICLEKVLKAQEECEIYRQ-------SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD 385
++ + + + I+ ++LQ Y E HV + + A++ L FD
Sbjct: 277 QRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHRE---HVTKTQILCAERRLLAL-FD 332
Query: 386 YSKAVDLGYIST------KLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKV 437
K +L +++T KL E+L+ L F S IIF +A + ++++
Sbjct: 333 DRKN-ELAHLATHGPENPKL-EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQ 390
Query: 438 PFLTHLTV-AYL---TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
L + + A L G+++ +T + Q+EV++ F+ G +NLL AT V EEG+ +P+C
Sbjct: 391 QGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHC 450
Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSERSVTDTALSRDPEACFLKACTYV 553
+ V+R+ L S +Q+RGRAR S + + R + ++ E +A V
Sbjct: 451 NVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAV 510
Query: 554 K 554
+
Sbjct: 511 Q 511
>RGD|1310093 [details] [associations]
symbol:Dhx58 "DEXH (Asp-Glu-X-His) box polypeptide 58"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA;ISO] [GO:0003727 "single-stranded RNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA;ISO]
[GO:0009615 "response to virus" evidence=IEA;ISO] [GO:0032480
"negative regulation of type I interferon production"
evidence=IEA;ISO] [GO:0032481 "positive regulation of type I
interferon production" evidence=IEA;ISO] [GO:0039534 "negative
regulation of MDA-5 signaling pathway" evidence=IEA;ISO]
[GO:0039536 "negative regulation of RIG-I signaling pathway"
evidence=IEA;ISO] [GO:0045088 "regulation of innate immune
response" evidence=ISO] [GO:0045824 "negative regulation of innate
immune response" evidence=IEA;ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA;ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=IEA;ISO]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 RGD:1310093 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0032480 GO:GO:0039534 GO:GO:0039536 GO:GO:0045824
GeneTree:ENSGT00510000046789 GO:GO:1900245 GO:GO:1900246 CTD:79132
KO:K12649 OMA:ELRPYQW OrthoDB:EOG44QT15 GO:GO:0032481
IPI:IPI00371058 RefSeq:NP_001092258.1 UniGene:Rn.105654
Ensembl:ENSRNOT00000024718 GeneID:303538 KEGG:rno:303538
UCSC:RGD:1310093 NextBio:651548 Uniprot:D3ZD46
Length = 678
Score = 264 (98.0 bits), Expect = 8.9e-19, P = 8.9e-19
Identities = 135/513 (26%), Positives = 218/513 (42%)
Query: 47 RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
R YQ +V A + +N I L TGAGKT A + K + + G K+++ L VHL
Sbjct: 4 RPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETV-DRG--KVVV-LVNRVHL 59
Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA- 162
V+Q + R D + V G G + +D+L+ T ++L AL+ +
Sbjct: 60 VNQHAEEFRRMLDKQWTVTTLSGDMG----SRAGFGLLARSHDLLICTAELLHLALKSSE 115
Query: 163 ---FLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HKSDNK---PKVFGMTASPVVRKG 215
+ L IV+DECHH + Y I+ + HK P+V G+TASP G
Sbjct: 116 EDEHVELTEFSLIVVDECHHTHKDTIYNTILSRYLEHKLKKAKPLPQVLGLTASP----G 171
Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
A +G I +L + LD+ ++ + K C+ YD + D G
Sbjct: 172 TGGATKLQGAIDHILQLCANLDTWRIMSPKNCYSQLLEHNPKP-CKQYDLCQRRTQDPFG 230
Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHA-KILYCLDELGLICAYE 331
L L KL Q++ +M D + Q+ + ++ E GL
Sbjct: 231 DL----------LKKLM-KQIHQQLEMPDLKQQFGTQMYEQQVVQLSKDAAEAGLQ-EQR 278
Query: 332 AVKICLEKVLKAQEECEIYRQ-SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAV 390
+ L + A + R +L + + + + A++ L+ D+ KA+
Sbjct: 279 VYALHLRRYNDALYIHDTVRAWDALNMLQDFYDTERALKTQMVHAERWLLELFDDHRKAL 338
Query: 391 DL----GYISTKLHELLQ--LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT 444
G + KL E+L+ L FG IIF A + ++++ P L +
Sbjct: 339 AQFAAQGPENPKL-EMLEGILLKQFGSPDHTRGIIFTRTRQTASSLLLWLRQQPCLQTVN 397
Query: 445 VA--YL--TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
+ L G+T +T K Q+EV++ FR GK+NLL AT V EEG+ + C+ V+R+
Sbjct: 398 IKPQMLIGAGNTGQSTHMTQKDQQEVIQEFRDGKLNLLVATSVAEEGLDIAQCNVVVRYG 457
Query: 501 LPKTVSSYIQSRGRARQHNSQFILMLERSERSV 533
L S +Q+RGRAR S + + R +
Sbjct: 458 LLTNEISMVQARGRARAGQSVYSFVATEGSREI 490
>UNIPROTKB|D4AC08 [details] [associations]
symbol:Ifih1 "Protein Ifih1" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0042981
"regulation of apoptotic process" evidence=IEA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 RGD:1560496 GO:GO:0005524 GO:GO:0042981 GO:GO:0003677
GO:GO:0005622 GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 IPI:IPI00568713
Ensembl:ENSRNOT00000040263 ArrayExpress:D4AC08 Uniprot:D4AC08
Length = 978
Score = 171 (65.3 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 40/106 (37%), Positives = 59/106 (55%)
Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
G ++ V +T QKEV+ FR G++NLL AT V EEG+ + C+ VIR+ L + +
Sbjct: 711 GHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMV 770
Query: 510 QSRGRARQHNSQFILMLERSERSVTDTALSRD-PEACFLKACTYVK 554
Q+RGRAR S ++L+ S VT+ + D E KA V+
Sbjct: 771 QARGRARADESTYVLVTS-SGSGVTEREIVNDFREKMMYKAINRVQ 815
Score = 151 (58.2 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 67/257 (26%), Positives = 105/257 (40%)
Query: 23 MGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIK 81
MGS + + G ++ R YQ++V + A +N I L TG+GKT +AV + K
Sbjct: 238 MGSDSDEDTIMGTKRASPKPELQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITK 297
Query: 82 DIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC---W 138
D K +I L V L Q + + F ++++Y G+ D+Q +
Sbjct: 298 DHLDKKKQACESGKVIVLVNKVMLAEQLFR--KEFNPF-LKKWYRIIGLSG-DTQLKISF 353
Query: 139 QKEINKNDVLVMTPQILLDALRKAF------LSLDIVCFIVIDECHHATGNHPYTKIMKE 192
+ + DV++ T QIL ++L + L I+IDECHH Y IM+
Sbjct: 354 PEVVKSYDVIISTAQILENSLLNLESGEDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRR 413
Query: 193 FY------HK--SDNKPKV-FGMTASPVVRKGVSSAM-DCEGQISELESTLDSQVFTIED 242
+ HK NKP + GV +A E + L + FTI+
Sbjct: 414 YLKQKLKNHKLKKQNKPTIHLPQILGLTASPGVGAAKKQSEAEKHILNICANLDAFTIKT 473
Query: 243 -KTEMEVFVPSAKESCR 258
K + KE C+
Sbjct: 474 VKENLSQLKHQIKEPCK 490
Score = 40 (19.1 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 297 KDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV 340
K M K R+ SD L C + L+C+ E + + +EK+
Sbjct: 837 KKMKVKRSIARQYNSDPSLITLLCKNCSTLVCSGENIHV-IEKM 879
>RGD|1560496 [details] [associations]
symbol:Ifih1 "interferon induced with helicase C domain 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA;ISO]
[GO:0009615 "response to virus" evidence=IEA;ISO] [GO:0016925
"protein sumoylation" evidence=IEA;ISO] [GO:0032727 "positive
regulation of interferon-alpha production" evidence=ISO]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045087 "innate immune response"
evidence=IEA;ISO] InterPro:IPR001315 InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619
Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 RGD:1560496
GO:GO:0005524 GO:GO:0042981 GO:GO:0003677 GO:GO:0005622
GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH473949
GeneTree:ENSGT00510000046789 CTD:64135 KO:K12647 OMA:KCGQAWG
RefSeq:NP_001102669.1 UniGene:Rn.151974 Ensembl:ENSRNOT00000009620
GeneID:499801 KEGG:rno:499801 NextBio:704049 Uniprot:G3V6W5
Length = 1027
Score = 171 (65.3 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 40/106 (37%), Positives = 59/106 (55%)
Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
G ++ V +T QKEV+ FR G++NLL AT V EEG+ + C+ VIR+ L + +
Sbjct: 760 GHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMV 819
Query: 510 QSRGRARQHNSQFILMLERSERSVTDTALSRD-PEACFLKACTYVK 554
Q+RGRAR S ++L+ S VT+ + D E KA V+
Sbjct: 820 QARGRARADESTYVLVTS-SGSGVTEREIVNDFREKMMYKAINRVQ 864
Score = 151 (58.2 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 67/257 (26%), Positives = 105/257 (40%)
Query: 23 MGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIK 81
MGS + + G ++ R YQ++V + A +N I L TG+GKT +AV + K
Sbjct: 287 MGSDSDEDTIMGTKRASPKPELQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITK 346
Query: 82 DIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC---W 138
D K +I L V L Q + + F ++++Y G+ D+Q +
Sbjct: 347 DHLDKKKQACESGKVIVLVNKVMLAEQLFR--KEFNPF-LKKWYRIIGLSG-DTQLKISF 402
Query: 139 QKEINKNDVLVMTPQILLDALRKAF------LSLDIVCFIVIDECHHATGNHPYTKIMKE 192
+ + DV++ T QIL ++L + L I+IDECHH Y IM+
Sbjct: 403 PEVVKSYDVIISTAQILENSLLNLESGEDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRR 462
Query: 193 FY------HK--SDNKPKV-FGMTASPVVRKGVSSAM-DCEGQISELESTLDSQVFTIED 242
+ HK NKP + GV +A E + L + FTI+
Sbjct: 463 YLKQKLKNHKLKKQNKPTIHLPQILGLTASPGVGAAKKQSEAEKHILNICANLDAFTIKT 522
Query: 243 -KTEMEVFVPSAKESCR 258
K + KE C+
Sbjct: 523 VKENLSQLKHQIKEPCK 539
Score = 40 (19.1 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 297 KDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV 340
K M K R+ SD L C + L+C+ E + + +EK+
Sbjct: 886 KKMKVKRSIARQYNSDPSLITLLCKNCSTLVCSGENIHV-IEKM 928
>WB|WBGene00008400 [details] [associations]
symbol:drh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0035188 "hatching" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0007276 "gamete generation" evidence=IMP]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0070063 "RNA polymerase binding" evidence=IPI] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0070090 "metaphase plate"
evidence=IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IMP] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0035188 GO:GO:0040010 GO:GO:0003727 GO:GO:0006974
GO:GO:0003725 GO:GO:0000794 GO:GO:0030422 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
GO:GO:0043186 GO:GO:0008186 eggNOG:COG1111
GeneTree:ENSGT00510000046789 KO:K12646 EMBL:Z79752 GO:GO:0070090
PIR:T20332 RefSeq:NP_492161.3 ProteinModelPortal:Q93413 SMR:Q93413
IntAct:Q93413 MINT:MINT-6178703 STRING:Q93413 PaxDb:Q93413
EnsemblMetazoa:D2005.5 GeneID:172546 KEGG:cel:CELE_D2005.5
UCSC:D2005.5 CTD:172546 WormBase:D2005.5 HOGENOM:HOG000018535
InParanoid:Q93413 OMA:ACNLIIK NextBio:875985 Uniprot:Q93413
Length = 1119
Score = 180 (68.4 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 53/175 (30%), Positives = 88/175 (50%)
Query: 47 RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVML-IKDIAQAIKSNGFKKLIIFLAPTVH 104
R YQ ++ + A + +N + V TG+GKT +A+ +K I + S G ++ L P +
Sbjct: 372 RTYQEELVQPALEGKNCVIVAPTGSGKTEVAIYAALKHIEERT-SQGKPSRVVLLVPKIP 430
Query: 105 LVHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
LV QQ D + + +EV ++G++ + + E+ V VMTPQIL++ L+
Sbjct: 431 LVGQQKDRFLKYCNGMYEVNGFHGSESSVSGTGR--RDEVIATHVSVMTPQILINMLQSV 488
Query: 163 F----LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR 213
L + ++ DE H A NHPY I + KP++ G+TAS V+
Sbjct: 489 RQNERLYVSDFSMMIFDEVHKAAKNHPYVLINQMVQEWKYEKPQIIGLTASLSVK 543
Score = 139 (54.0 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 39/128 (30%), Positives = 67/128 (52%)
Query: 418 IIFVERIIAAKVVERFVKKVPFLTHL------TVAYLTGSTTSVDAL--TPKVQKEVLES 469
IIFV + A+ V F+ + L V Y+ G T A+ T + Q+ L+
Sbjct: 764 IIFVTQRSTAQRVSDFLNESKVLDQFGNYGEQMVGYVLG-TNKQGAVQQTSQEQQLTLDK 822
Query: 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK-TVSSYIQSRGRARQHNSQFILMLER 528
F G++ ++ AT V+EEG+ V C+ +I+++ + +Q RGRAR NS+ +L+ +
Sbjct: 823 FNNGRLKVIVATSVVEEGLDVTACNLIIKYNCSSGSAIQLVQQRGRARAKNSRSVLLSVK 882
Query: 529 SERSVTDT 536
S + T+T
Sbjct: 883 SSINETET 890
>UNIPROTKB|K7GMB7 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 EMBL:CU856598
Ensembl:ENSSSCT00000033560 Uniprot:K7GMB7
Length = 588
Score = 159 (61.0 bits), Expect = 5.2e-18, Sum P(2) = 5.2e-18
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 449 TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
+ +T + +T + Q+EV++ FR G +NLL AT V EEG+ +P C+ V+R+ L S
Sbjct: 409 SSQSTPMTQMTQRDQQEVIQKFRTGALNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISM 468
Query: 509 IQSRGRARQHNSQFILMLERSERSV 533
+Q+RGRAR S + + + R +
Sbjct: 469 VQARGRARASQSVYSFVAAQGSREL 493
Score = 152 (58.6 bits), Expect = 5.2e-18, Sum P(2) = 5.2e-18
Identities = 63/227 (27%), Positives = 102/227 (44%)
Query: 47 RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
R YQ +V A + RN I L TGAGKT A + K + + +G K ++ L VHL
Sbjct: 4 RPYQWEVIMPALEGRNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59
Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
V Q + D + + G G +D+L+ T ++L AL
Sbjct: 60 VTQHCEEFSRMLDRRWAITTLSGDMGPRAGFGHL----ARSHDLLICTAELLQKALTSEE 115
Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HKSDNK---PKVFGMTASPVVRKG 215
+ + L++ +V+DECHH + Y I+ ++ HK P+V G+TASP G
Sbjct: 116 EEEHVELNVFSLLVVDECHHTHKDTVYNIILSQYLKHKFQRTKPLPQVLGLTASPGT--G 173
Query: 216 VSSAMD-CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD 261
+S +D I +L + LD+ + ++ S ++ C+ YD
Sbjct: 174 RASTLDGAIDHILQLCANLDTWRIMSPQNSRSQLQEHS-RQPCKQYD 219
>MGI|MGI:1918836 [details] [associations]
symbol:Ifih1 "interferon induced with helicase C domain 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016925 "protein
sumoylation" evidence=ISO] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=ISO] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0042981
"regulation of apoptotic process" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=ISO] [GO:0045087
"innate immune response" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR001315 InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619
Pfam:PF04851 Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194
SMART:SM00490 MGI:MGI:1918836 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0042981 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0051607
GO:GO:0009615 GO:GO:0003725 GO:GO:0004386 Gene3D:1.10.533.10
InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0043021 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016925 GO:GO:0032727
eggNOG:COG1111 GeneTree:ENSGT00510000046789 GO:GO:0032728
HOVERGEN:HBG106019 CTD:64135 KO:K12647 OMA:KCGQAWG
OrthoDB:EOG48KR9P EMBL:AY075132 EMBL:AF374384 EMBL:AK018602
EMBL:AK037057 EMBL:AK040519 EMBL:AK153018 EMBL:AL929246
EMBL:BC004031 EMBL:BC019605 EMBL:BC025508 EMBL:BC080200
IPI:IPI00172284 IPI:IPI00555048 RefSeq:NP_001157949.1
RefSeq:NP_082111.2 UniGene:Mm.136224 PDB:3TS9 PDBsum:3TS9
ProteinModelPortal:Q8R5F7 SMR:Q8R5F7 STRING:Q8R5F7
PhosphoSite:Q8R5F7 PaxDb:Q8R5F7 PRIDE:Q8R5F7
Ensembl:ENSMUST00000028259 Ensembl:ENSMUST00000112459 GeneID:71586
KEGG:mmu:71586 UCSC:uc012bvy.1 InParanoid:A2AUY7 NextBio:334053
Bgee:Q8R5F7 CleanEx:MM_IFIH1 Genevestigator:Q8R5F7
GermOnline:ENSMUSG00000026896 Uniprot:Q8R5F7
Length = 1025
Score = 173 (66.0 bits), Expect = 5.2e-18, Sum P(2) = 5.2e-18
Identities = 72/276 (26%), Positives = 126/276 (45%)
Query: 297 KDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL----EKVLKAQEECEIYRQ 352
KD + K + + L Y+ + L D + +I AY ++ EK + +
Sbjct: 592 KDGNRKDRVCAEHLRKYN-EALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSDKSDD 650
Query: 353 SSLQCKYFLEEVLHVIGSALPL--ADKIFLDFGFDYSK-----AVDLGYISTKLHELLQL 405
+ C +++ + +L L D+ ++ FD K A + Y + KL +L
Sbjct: 651 EASSCN---DQLKGDVKKSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNT 707
Query: 406 FLS-FGKSTQVLC-IIFVERIIAAKVVERFVKKVPFLTHLTVA--YLTGS--TTSVDALT 459
L F +S + IIF + + + +++ + + V +L G+ ++ V +T
Sbjct: 708 ILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMT 767
Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
QKEV+ FR G++NLL AT V EEG+ + C+ VIR+ L + +Q+RGRAR
Sbjct: 768 QTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 827
Query: 520 SQFILMLERSERSVTDTALSRD-PEACFLKACTYVK 554
S ++L+ S VT+ + D E KA V+
Sbjct: 828 STYVLVTS-SGSGVTEREIVNDFREKMMYKAINRVQ 862
Score = 144 (55.7 bits), Expect = 5.2e-18, Sum P(2) = 5.2e-18
Identities = 70/269 (26%), Positives = 109/269 (40%)
Query: 16 HSPNPP-DMGSSGHDHAVDGPSSSTNSINFIPRI----YQLKVFEVA-KRRNTIAVLETG 69
H+ N D G+ G D D T ++ P + YQ++V + A +N I L TG
Sbjct: 276 HNSNMGRDSGTMGSDS--DESVIQTKRVSPEPELQLRPYQMEVAQPALDGKNIIICLPTG 333
Query: 70 AGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKG 129
+GKT +AV + KD K +I L V L Q + R + ++++Y G
Sbjct: 334 SGKTRVAVYITKDHLDKKKQASESGKVIVLVNKVMLAEQLF---RKEFNPYLKKWYRIIG 390
Query: 130 VDEWDSQC---WQKEINKNDVLVMTPQILLDALRKAF------LSLDIVCFIVIDECHHA 180
+ D+Q + + + DV++ T QIL ++L + L I+IDECHH
Sbjct: 391 LSG-DTQLKISFPEVVKSYDVIISTAQILENSLLNLESGDDDGVQLSDFSLIIIDECHHT 449
Query: 181 TGNHPYTKIMKEFYH--------KSDNKPKV-FGMTASPVVRKGVSSAM-DCEGQISELE 230
Y IM+ + K NKP + GV +A E + L
Sbjct: 450 NKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQILGLTASPGVGAAKKQSEAEKHILN 509
Query: 231 STLDSQVFTIED-KTEMEVFVPSAKESCR 258
+ FTI+ K + KE C+
Sbjct: 510 ICANLDAFTIKTVKENLGQLKHQIKEPCK 538
>UNIPROTKB|E2RNK0 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045087 "innate immune response"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0016925 "protein sumoylation" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0042981
"regulation of apoptotic process" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001315 InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619 Pfam:PF04851
Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0042981 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0009615
GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
GO:GO:0043021 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016925 GeneTree:ENSGT00510000046789 CTD:64135 KO:K12647
OMA:KCGQAWG EMBL:AAEX03017717 RefSeq:XP_545493.2
Ensembl:ENSCAFT00000016597 GeneID:488371 KEGG:cfa:488371
Uniprot:E2RNK0
Length = 1029
Score = 170 (64.9 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 39/106 (36%), Positives = 58/106 (54%)
Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
G ++ +T QKEV+ FR GK+NLL AT V EEG+ + C+ VIR+ L + +
Sbjct: 761 GHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMV 820
Query: 510 QSRGRARQHNSQFILMLERSERSVTDTALSRD-PEACFLKACTYVK 554
Q+RGRAR S ++L+ S V + + D E KA +V+
Sbjct: 821 QARGRARADESTYVLVAH-SNSGVIEREIVNDFREKMMYKAIDHVQ 865
Score = 147 (56.8 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 61/194 (31%), Positives = 92/194 (47%)
Query: 23 MGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIK 81
MGS + V +S ++ P YQ++V + A + +N I L TG+GKT +AV + K
Sbjct: 288 MGSDSDEENVAERASPEPELHLRP--YQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAK 345
Query: 82 DIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE--VEEYYGAKGVDEWDSQCWQ 139
D K +I L V LV Q + +FE ++++Y G+ D+Q
Sbjct: 346 DHLDKKKKASEPGKVIVLVNKVPLVEQLF-----REEFEPFLKKWYHTIGLSG-DTQLKI 399
Query: 140 K--EINKN-DVLVMTPQILLDALRKAFLSLDI-VCF-----IVIDECHHATGNHPYTKIM 190
EI K DV++ T QIL ++L + D V F I+IDECHH Y IM
Sbjct: 400 SFPEIVKTYDVIISTAQILENSLLNSEKGEDDGVQFSDFTLIIIDECHHTNKEAVYNNIM 459
Query: 191 KEFYHKS--DNKPK 202
+ + + +NK K
Sbjct: 460 RRYLKQKLKNNKLK 473
Score = 95 (38.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 29/101 (28%), Positives = 47/101 (46%)
Query: 172 IVIDECHHATGNHPYTKIMKEFYHKS--DNK-----------PKVFGMTASPVVRKGVSS 218
I+IDECHH Y IM+ + + +NK P++ G+TASP VR G
Sbjct: 441 IIIDECHHTNKEAVYNNIMRRYLKQKLKNNKLKKEYKPVIPLPQILGLTASPGVR-GAKR 499
Query: 219 AMDCEGQISELESTLDS-QVFTIEDKTEMEVFVPSAKESCR 258
+ + I ++ + LD+ + T+ K + KE C+
Sbjct: 500 QAEAQQHILKICANLDACTIITV--KENINQLKGQMKEPCK 538
>UNIPROTKB|Q9BYX4 [details] [associations]
symbol:IFIH1 "Interferon-induced helicase C
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0042981 "regulation of
apoptotic process" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0019048
"virus-host interaction" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016925 "protein
sumoylation" evidence=IDA] [GO:0039528 "cytoplasmic pattern
recognition receptor signaling pathway in response to virus"
evidence=TAS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IMP;TAS] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=IMP;TAS] [GO:0003725
"double-stranded RNA binding" evidence=IDA;TAS] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0034344 "regulation
of type III interferon production" evidence=TAS] [GO:0009615
"response to virus" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0032480 "negative regulation of type I interferon production"
evidence=TAS] [GO:0009597 "detection of virus" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS50209
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 Reactome:REACT_6900 GO:GO:0019048 GO:GO:0042981
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 Reactome:REACT_107772 GO:GO:0003725 GO:GO:0004386
Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0043021
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0032480
GO:GO:0016925 GO:GO:0032727 eggNOG:COG1111 GO:GO:0032728
GO:GO:0009597 GO:GO:0034344 HOGENOM:HOG000230992 HOVERGEN:HBG106019
EMBL:AF095844 EMBL:AY017378 EMBL:BC046208 EMBL:BC078180
EMBL:BC111750 EMBL:AK056293 IPI:IPI00005577 IPI:IPI00556546
RefSeq:NP_071451.2 UniGene:Hs.163173 PDB:2RQB PDB:3B6E PDB:3GA3
PDB:4GL2 PDBsum:2RQB PDBsum:3B6E PDBsum:3GA3 PDBsum:4GL2
ProteinModelPortal:Q9BYX4 SMR:Q9BYX4 DIP:DIP-42607N IntAct:Q9BYX4
MINT:MINT-3381993 STRING:Q9BYX4 PhosphoSite:Q9BYX4 DMDM:134047802
PaxDb:Q9BYX4 PRIDE:Q9BYX4 Ensembl:ENST00000263642
Ensembl:ENST00000421365 Ensembl:ENST00000543192 GeneID:64135
KEGG:hsa:64135 UCSC:uc002uce.3 UCSC:uc002ucf.3 CTD:64135
GeneCards:GC02M163123 HGNC:HGNC:18873 HPA:HPA002656 MIM:606951
MIM:610155 neXtProt:NX_Q9BYX4 PharmGKB:PA134889215
InParanoid:Q9BYX4 KO:K12647 OMA:KCGQAWG OrthoDB:EOG48KR9P
PhylomeDB:Q9BYX4 ChiTaRS:IFIH1 EvolutionaryTrace:Q9BYX4
GenomeRNAi:64135 NextBio:66034 ArrayExpress:Q9BYX4 Bgee:Q9BYX4
CleanEx:HS_IFIH1 Genevestigator:Q9BYX4 GermOnline:ENSG00000115267
GO:GO:0039528 Uniprot:Q9BYX4
Length = 1025
Score = 164 (62.8 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 38/112 (33%), Positives = 58/112 (51%)
Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
G ++ +T QKEV+ FR GK+NLL AT V EEG+ + C+ VIR+ L + +
Sbjct: 758 GHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMV 817
Query: 510 QSRGRARQHNSQFILMLERSERSVTDTALSRDPEACFLKA--CTY-VKTKSY 558
Q+RGRAR S ++L+ + ++ E KA C +K + Y
Sbjct: 818 QARGRARADESTYVLVAHSGSGVIEHETVNDFREKMMYKAIHCVQNMKPEEY 869
Score = 153 (58.9 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 66/257 (25%), Positives = 109/257 (42%)
Query: 23 MGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIK 81
MGS + V +S + P YQ++V + A + +N I L TG+GKT +AV + K
Sbjct: 287 MGSDSDEENVAARASPEPELQLRP--YQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAK 344
Query: 82 DIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC---W 138
D K +I L V LV Q + + F ++++Y G+ D+Q +
Sbjct: 345 DHLDKKKKASEPGKVIVLVNKVLLVEQLFR--KEFQPF-LKKWYRVIGLSG-DTQLKISF 400
Query: 139 QKEINKNDVLVMTPQILLDAL------RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKE 192
+ + D+++ T QIL ++L A + L I+IDECHH Y IM+
Sbjct: 401 PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 460
Query: 193 FYH--------KSDNKPKV-FGMTASPVVRKGVSSAM-DCEGQISELESTLDSQVFTIED 242
+ K +NKP + GV A + + L+ + FTI+
Sbjct: 461 YLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKT 520
Query: 243 -KTEMEVFVPSAKESCR 258
K ++ +E C+
Sbjct: 521 VKENLDQLKNQIQEPCK 537
Score = 38 (18.4 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 229 LESTLDSQVFTIEDKTEMEVFVPSAKES 256
L+ ++ ++ TIED+ + + ES
Sbjct: 135 LDKCMEEELLTIEDRNRIAAAENNGNES 162
>MGI|MGI:1931560 [details] [associations]
symbol:Dhx58 "DEXH (Asp-Glu-X-His) box polypeptide 58"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO;IDA] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0032480 "negative
regulation of type I interferon production" evidence=ISO;IMP]
[GO:0032481 "positive regulation of type I interferon production"
evidence=IMP] [GO:0039534 "negative regulation of MDA-5 signaling
pathway" evidence=ISO] [GO:0039536 "negative regulation of RIG-I
signaling pathway" evidence=ISO;IMP] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0045088 "regulation of innate immune
response" evidence=ISO] [GO:0045824 "negative regulation of innate
immune response" evidence=ISO;IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:1900245 "positive regulation of MDA-5 signaling pathway"
evidence=IMP] [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IMP] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1931560 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 eggNOG:COG1111 GeneTree:ENSGT00510000046789
GO:GO:1900245 GO:GO:1900246 CTD:79132 HOGENOM:HOG000230992
HOVERGEN:HBG106019 KO:K12649 OMA:ELRPYQW OrthoDB:EOG44QT15
GO:GO:0032481 EMBL:AF316999 EMBL:AF317000 EMBL:AL591469
EMBL:BC029209 IPI:IPI00319899 RefSeq:NP_084426.2 UniGene:Mm.271830
ProteinModelPortal:Q99J87 SMR:Q99J87 STRING:Q99J87
PhosphoSite:Q99J87 PaxDb:Q99J87 PRIDE:Q99J87
Ensembl:ENSMUST00000017974 GeneID:80861 KEGG:mmu:80861
InParanoid:A2A5E9 NextBio:350167 Bgee:Q99J87 CleanEx:MM_DHX58
Genevestigator:Q99J87 GermOnline:ENSMUSG00000017830 Uniprot:Q99J87
Length = 678
Score = 256 (95.2 bits), Expect = 6.5e-18, P = 6.5e-18
Identities = 140/524 (26%), Positives = 225/524 (42%)
Query: 47 RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
R YQ +V A + +N I L TGAGKT A + K + + G K+++ L VHL
Sbjct: 4 RPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETV-DRG--KVVV-LVNRVHL 59
Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA- 162
V Q + R D + V G G + +D+L+ T ++L AL +
Sbjct: 60 VSQHAEEFRRMLDKHWTVTTLSGDMG----SRAGFGLMARSHDLLICTAELLQLALNSSE 115
Query: 163 ---FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH----KSDNKPKVFGMTASPVVRKG 215
+ L IV+DECHH + Y I+ + K++ P+V G+TASP G
Sbjct: 116 EDEHVELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEPLPQVLGLTASP----G 171
Query: 216 VSSAMDCEGQIS---ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
A +G I +L + LD+ ++ + + K C+ YD + D G
Sbjct: 172 TGGATKLQGAIDHILQLCANLDTCHIMSPKNCYSQLLMHNPKP-CKQYDLCQRRAQDPFG 230
Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD--ELGLICAY 330
L + KL +Q++ +M D + Q+ + + C D E GL
Sbjct: 231 DL----------IKKLM-NQIHQQLEMPDLKQQFGTQMYEQQV-VQLCKDAAEAGLQ-EQ 277
Query: 331 EAVKICLEKVLKAQEECEIYR-QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKA 389
+ L + A + R + +L + + + A+ L FD K
Sbjct: 278 RVYALHLRRYNDALFIHDTVRARDALDMLQDFYDRERTTKTQMVRAESWLLKL-FDDHKN 336
Query: 390 VDLGYIST------KLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
V LG ++ KL L ++ L FG IIF A + ++++ P L
Sbjct: 337 V-LGQLAARGPENPKLEMLERILLKQFGSPGHTRGIIFTRTRQTASSLLLWLRQQPCLQT 395
Query: 443 LTVA--YL--TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
+ + L G+T+ +T K Q+EV++ FR G ++LL AT V EEG+ + C+ V+R
Sbjct: 396 VGIKPQMLIGAGNTSQSTHMTQKDQQEVIQEFRDGILSLLVATSVAEEGLDIAQCNVVVR 455
Query: 499 FDLPKTVSSYIQSRGRARQHNSQF-ILMLERS---ERSVTDTAL 538
+ L S +Q+RGRAR S + L E S +R +T+ AL
Sbjct: 456 YGLLTNEISMVQARGRARAGQSVYSFLATEGSREMKRELTNEAL 499
>UNIPROTKB|F1S0P6 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:1900245 "positive regulation of MDA-5
signaling pathway" evidence=IEA] [GO:0045824 "negative regulation
of innate immune response" evidence=IEA] [GO:0039536 "negative
regulation of RIG-I signaling pathway" evidence=IEA] [GO:0039534
"negative regulation of MDA-5 signaling pathway" evidence=IEA]
[GO:0032481 "positive regulation of type I interferon production"
evidence=IEA] [GO:0032480 "negative regulation of type I interferon
production" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727 "single-stranded
RNA binding" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0051607
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 GeneTree:ENSGT00510000046789 GO:GO:1900245
GO:GO:1900246 OMA:ELRPYQW GO:GO:0032481 EMBL:CU856598
Ensembl:ENSSSCT00000018960 Ensembl:ENSSSCT00000035155
Uniprot:F1S0P6
Length = 681
Score = 159 (61.0 bits), Expect = 8.0e-18, Sum P(2) = 8.0e-18
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 449 TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
+ +T + +T + Q+EV++ FR G +NLL AT V EEG+ +P C+ V+R+ L S
Sbjct: 409 SSQSTPMTQMTQRDQQEVIQKFRTGALNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISM 468
Query: 509 IQSRGRARQHNSQFILMLERSERSV 533
+Q+RGRAR S + + + R +
Sbjct: 469 VQARGRARASQSVYSFVAAQGSREL 493
Score = 152 (58.6 bits), Expect = 8.0e-18, Sum P(2) = 8.0e-18
Identities = 63/227 (27%), Positives = 102/227 (44%)
Query: 47 RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
R YQ +V A + RN I L TGAGKT A + K + + +G K ++ L VHL
Sbjct: 4 RPYQWEVIMPALEGRNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59
Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
V Q + D + + G G +D+L+ T ++L AL
Sbjct: 60 VTQHCEEFSRMLDRRWAITTLSGDMGPRAGFGHL----ARSHDLLICTAELLQKALTSEE 115
Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HKSDNK---PKVFGMTASPVVRKG 215
+ + L++ +V+DECHH + Y I+ ++ HK P+V G+TASP G
Sbjct: 116 EEEHVELNVFSLLVVDECHHTHKDTVYNIILSQYLKHKFQRTKPLPQVLGLTASPGT--G 173
Query: 216 VSSAMD-CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD 261
+S +D I +L + LD+ + ++ S ++ C+ YD
Sbjct: 174 RASTLDGAIDHILQLCANLDTWRIMSPQNSRSQLQEHS-RQPCKQYD 219
>SGD|S000001441 [details] [associations]
symbol:MPH1 "3'-5' DNA helicase involved in error-free bypass
of DNA lesions" species:4932 "Saccharomyces cerevisiae" [GO:0006281
"DNA repair" evidence=IEA] [GO:0060543 "negative regulation of
strand invasion" evidence=IMP;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=IGI]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IGI] [GO:0070336
"flap-structured DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000725 "recombinational repair"
evidence=IMP] InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271
Pfam:PF04851 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000001441 GO:GO:0005524 GO:GO:0005634 EMBL:BK006942
EMBL:X79743 EMBL:Z38062 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0036297 GO:GO:0000725 eggNOG:COG1111
GO:GO:0033567 GO:GO:0043138 GeneTree:ENSGT00640000091530 KO:K14635
OrthoDB:EOG4JHGPV PIR:S48436 RefSeq:NP_012267.1
ProteinModelPortal:P40562 SMR:P40562 DIP:DIP-5016N IntAct:P40562
MINT:MINT-493277 STRING:P40562 PaxDb:P40562 PeptideAtlas:P40562
EnsemblFungi:YIR002C GeneID:854818 KEGG:sce:YIR002C CYGD:YIR002c
HOGENOM:HOG000066122 OMA:KNREEIW NextBio:977660
Genevestigator:P40562 GermOnline:YIR002C GO:GO:0070336
GO:GO:0060543 Uniprot:P40562
Length = 993
Score = 193 (73.0 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 70/227 (30%), Positives = 111/227 (48%)
Query: 24 GSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDI 83
G + H+ D S N+ R YQ + + +NT+ + TG GKT IA ++ +
Sbjct: 65 GPTHHELDYDALSFYVYPTNYEVRDYQYTIVHKSLFQNTLCAIPTGMGKTFIASTVMLNY 124
Query: 84 AQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEIN 143
+ K K IIF APT LV QQ T ++ A +D+ S+ ++EI
Sbjct: 125 FRWTK----KAKIIFTAPTRPLVAQQIKACLGITGIPSDQT--AILLDK--SRKNREEIW 176
Query: 144 KND-VLVMTPQILLDALRKAFLS-LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKP 201
N V TPQ++ + L++ L DIVC +VIDE H ATG+ YT ++K F + ++
Sbjct: 177 ANKRVFFATPQVVENDLKRGVLDPKDIVC-LVIDEAHRATGSSAYTNVVK-FIDRFNSSY 234
Query: 202 KVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEV 248
++ +TA+P A D EG + E+ + LD I + M++
Sbjct: 235 RLLALTATP--------ASDLEG-VQEVVNNLDISKIEIRTEESMDI 272
Score = 121 (47.7 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 33/119 (27%), Positives = 58/119 (48%)
Query: 449 TGST--TSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506
TGS+ + + K+QKEV+ +F+ G+ N+L T + EEG+ + +I +D +
Sbjct: 540 TGSSEEAQISGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPI 599
Query: 507 SYIQSRGRA-RQHNSQFILMLERSERSVTDTALS--RDPEACFLKACT-YVKTKSYIVE 561
IQ GR R+ + + +L+ +E + A+ +A K C Y K+ I E
Sbjct: 600 KNIQRMGRTGRKRDGKIVLLFSSNESYKFERAMEDYSTLQALISKQCIDYKKSDRIIPE 658
Score = 57 (25.1 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 1234 VPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQ-NLYKHLQHCSTLLLSQ-IT 1291
VP + EI+DI ++G VK +LQ+AI +E Q N +K +Q ++ + I
Sbjct: 286 VPLLLEIEDIIEQLG--MAVKPVLQQAIELGIYEECDPSQINAFKAMQQSQKIIANPTIP 343
Query: 1292 EYVK 1295
E +K
Sbjct: 344 EGIK 347
Score = 49 (22.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 1250 EFTVKFLLQEAITHASVQEFYCYQNLYKHLQH-CSTLL 1286
EFT K+ L+++ T+ EFY Y + K++++ C L
Sbjct: 385 EFTTKYNLKKS-TNKIAAEFY-YHPILKNIKNQCENYL 420
Score = 47 (21.6 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 915 NSSAESPFDGNTDDDSKTFV----NYFSEKYGIVLIHPGQPLLRLKQSHNPH--NLLVNF 968
+SS E+ D DD+ F+ N + +I G+ L LK HN N+ +
Sbjct: 780 SSSLETE-DEEVSDDNNVFIAEGQNGCQKDLETAIIRTGESLTTLKPLHNFERPNMALFV 838
Query: 969 ND 970
ND
Sbjct: 839 ND 840
Score = 44 (20.5 bits), Expect = 3.6e-17, Sum P(3) = 3.6e-17
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 1237 INEIKDIESKIGYEFTV----KFLLQEAITHAS-VQE------FYCYQNLYKHLQHCSTL 1285
INE++D++ I Y K ++AIT VQE F+ N+ + STL
Sbjct: 678 INEMEDVDEVIRYATQCMMGKKVKPKKAITKKKRVQENKKPKKFFMPDNVETSIVSASTL 737
Query: 1286 LLSQITEYVKSFPKPGETTDSGPSMKAP--KALGDL 1319
+ + +S K T++ PS K KAL +L
Sbjct: 738 INKFLVN--ESGGKQLVTSNENPSKKRKIFKALDNL 771
Score = 39 (18.8 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 1043 IPSSLILEALTTLGCC--ESFSMERLELLGDSVLKYAVSCHLFLTY-PKK 1089
IP +I E TL E+ + +E + D V++YA C + PKK
Sbjct: 656 IPEDIIPECHETLITINDENEIINEMEDV-DEVIRYATQCMMGKKVKPKK 704
>POMBASE|SPAC9.05 [details] [associations]
symbol:fml1 "ATP-dependent 3' to 5' DNA helicase, FANCM
ortholog Fml1" species:4896 "Schizosaccharomyces pombe" [GO:0000732
"strand displacement" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=IDA] [GO:0031297 "replication
fork processing" evidence=IMP] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IC]
[GO:0071821 "FANCM-MHF complex" evidence=ISS] [GO:0071932
"replication fork reversal" evidence=IDA] [GO:2000042 "negative
regulation of double-strand break repair via homologous
recombination" evidence=IMP] [GO:0003690 "double-stranded DNA
binding" evidence=ISS] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC9.05 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000732 GO:GO:0009378
GO:GO:0071821 eggNOG:COG1111 GO:GO:0033567 GO:GO:0071932 PIR:T39190
RefSeq:NP_593348.2 ProteinModelPortal:Q9UT23 STRING:Q9UT23
EnsemblFungi:SPAC9.05.1 GeneID:2543668 KEGG:spo:SPAC9.05
HOGENOM:HOG000076770 KO:K14635 OMA:RTENSID OrthoDB:EOG4JHGPV
NextBio:20804674 GO:GO:2000042 Uniprot:Q9UT23
Length = 834
Score = 253 (94.1 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 124/507 (24%), Positives = 225/507 (44%)
Query: 42 INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
IN R YQ + + A N + L TG GKT IA +++ + + K I+F+AP
Sbjct: 69 INVSFRDYQFNIVQKALFENVLVALPTGLGKTFIAAVVMMNYLRWFP----KSYIVFMAP 124
Query: 102 TVHLVHQQYDVIRVHTDF---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158
T LV QQ + T + E G V +Q +Q ++N V +TPQ +L+
Sbjct: 125 TKPLVTQQMEACYKITGIPKSQTAELSGHVPVTT-RNQYYQ---SRN-VFFVTPQTILND 179
Query: 159 LRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR-KGVS 217
++ + +VIDE H +TGN+ Y +++ S+ ++ ++A+P + + +
Sbjct: 180 IKHGICDRTRISCLVIDEAHRSTGNYAYVEVV-HLLSLSNKNFRILALSATPGNKLEAIQ 238
Query: 218 SAMDCEGQISELESTLDSQVFTIE--DKTEMEVF-VPSAKESCRFYDQSKFCGSDLKGKL 274
+ +D IS +E ++ + + K E++ F V + E D+ + KL
Sbjct: 239 NVIDSL-HISRIEIRTENSIDISQYVQKKEVDFFPVDLSAEITDIRDRFSSILEPMLQKL 297
Query: 275 E------VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQ---LSDYHAKILYCLDELG 325
+ +K S + +Q Q + M ++ ++ L+ + A + L
Sbjct: 298 NKGNYYRIQNAKDITSFTVVQAKQ--AFLAMSGQNFPANQKWDILNTFDALATFAYP-LN 354
Query: 326 LICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL---DF 382
L+ + ++ +K+ + +EEC + R Y + H + PL D I + D
Sbjct: 355 LLLNH-GIRPFYQKLREVEEECFVGRSG-----YKKRIINHE--NYRPLMDDIEILLRDQ 406
Query: 383 GF-DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT 441
F + K L I T+ E Q K T+++ IFVE +A+ + RF+ K F
Sbjct: 407 SFVGHPKLEHLERIVTEYFEKEQT-----KDTRIM--IFVEIRSSAEEILRFLGK--FYP 457
Query: 442 HLTVAYLTGSTTSVDA--LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499
++ A G + A ++ K+Q E ++ F+ G+VN L AT + EEG+ + +I +
Sbjct: 458 NVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICY 517
Query: 500 DLPKTVSSYIQSRGRARQHNSQFILML 526
D + +Q GR + +I ML
Sbjct: 518 DASASPIRMLQRMGRTGRKRKGYIYML 544
>WB|WBGene00001090 [details] [associations]
symbol:drh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016246
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 HSSP:P10081
EMBL:AF480439 EMBL:FO080250 PIR:T32534 RefSeq:NP_501018.1
UniGene:Cel.32668 ProteinModelPortal:G5EDI8 SMR:G5EDI8
IntAct:G5EDI8 EnsemblMetazoa:F15B10.2 GeneID:177425
KEGG:cel:CELE_F15B10.2 CTD:177425 WormBase:F15B10.2 OMA:YRMINIR
NextBio:896758 Uniprot:G5EDI8
Length = 1037
Score = 183 (69.5 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 62/223 (27%), Positives = 111/223 (49%)
Query: 47 RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
R YQ ++ +VA + +NTI TG+GKT+IA +IK+ ++ S G + +F+ P +
Sbjct: 294 RNYQEELCQVALQGKNTIVTAPTGSGKTVIAANIIKEHFESRSSEGKRFKALFMTPNSMI 353
Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
++QQ I + D Y + + D+ + I D++V TPQ++++ + S
Sbjct: 354 LNQQAASISSYLD----HVYHTQIIQGSDNVPTRNVIQSKDLIVATPQMIVNLCNEHRNS 409
Query: 166 LD---------IVCFIVI--DECHHATGNHPYTKIMKEFYH--------KSDNKPKVFGM 206
LD + F +I DECH+ N PY+ IM+E+++ + + P++ G+
Sbjct: 410 LDDESRLDQFFLSTFTIIFFDECHNTVKNSPYSNIMREYHYLKNMGNMPEGHSLPQIIGL 469
Query: 207 TASPVVRKGVSSAMDC---EGQISELESTLDSQVFTI-EDKTE 245
TAS G DC I+ L +++D + +I +D E
Sbjct: 470 TAS----LGTGDKNDCLQVRNYIAGLCASMDVKDLSIVKDNLE 508
Score = 140 (54.3 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 449 TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
T S+ + A K Q E L+ F G++ +L +T V EEG+ VP CS VI+++ ++
Sbjct: 742 TASSADISASKQK-QMEKLKMFADGEIRILVSTSVAEEGLDVPECSLVIKYNYATNEIAH 800
Query: 509 IQSRGRARQHNSQFILM 525
+Q RGR R NS+ +L+
Sbjct: 801 VQRRGRGRALNSECVLI 817
Score = 42 (19.8 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 447 YLTGSTTSVDALTPKVQKEVLESFRG 472
Y+ G S+D + K+ LE RG
Sbjct: 487 YIAGLCASMDVKDLSIVKDNLEELRG 512
Score = 38 (18.4 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 569 TDSSVNLIHRYCEMLPSDKYYTPKPI 594
TD + ++ ++ +L DKY+TP I
Sbjct: 980 TDKRI-IVKKWKNIL--DKYFTPTEI 1002
>UNIPROTKB|Q5E9G8 [details] [associations]
symbol:LGP2 "Putative uncharacterized protein LGP2"
species:9913 "Bos taurus" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0045824 "negative
regulation of innate immune response" evidence=IEA] [GO:0039536
"negative regulation of RIG-I signaling pathway" evidence=IEA]
[GO:0039534 "negative regulation of MDA-5 signaling pathway"
evidence=IEA] [GO:0032481 "positive regulation of type I interferon
production" evidence=IEA] [GO:0032480 "negative regulation of type
I interferon production" evidence=IEA] [GO:0009615 "response to
virus" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727 "single-stranded
RNA binding" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0051607
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 GeneTree:ENSGT00510000046789 GO:GO:1900245
GO:GO:1900246 CTD:79132 HOVERGEN:HBG106019 KO:K12649 OMA:ELRPYQW
GO:GO:0032481 EMBL:DAAA02049179 EMBL:DAAA02049177 EMBL:DAAA02049178
EMBL:BT020952 IPI:IPI00693785 RefSeq:NP_001015545.1
UniGene:Bt.27564 Ensembl:ENSBTAT00000065738 GeneID:508378
KEGG:bta:508378 NextBio:20868490 Uniprot:Q5E9G8
Length = 680
Score = 246 (91.7 bits), Expect = 7.9e-17, P = 7.9e-17
Identities = 123/516 (23%), Positives = 220/516 (42%)
Query: 47 RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
R YQ +V A + +N I L TG+GKT A + + + + +G K ++ L VHL
Sbjct: 4 RPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVARRHLETV--DGAK--VVVLVNRVHL 59
Query: 106 VHQQYDVIR--VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
V Q + + + + G G + ++D+L+ T ++L AL
Sbjct: 60 VTQHCEEFSRMLERRWTITTLSGDMG----PRAGFGHVARRHDLLICTAELLQKALASPE 115
Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH----KSDNKPKVFGMTASPVVRKG 215
+ + L+ +V+DECHH + Y I+ ++ ++ P+V G+TASP G
Sbjct: 116 EEEHVELNAFSLLVVDECHHTHKDTVYNIILSQYLELKLQRTRPLPQVLGLTASPGTG-G 174
Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275
VS+ + +L + LD+ + K + + C+ YD C +
Sbjct: 175 VSTLEGAIDHVLQLCANLDTWCI-MSPKDHSPQLQEHSHQPCKQYD---LCHRRTQ---- 226
Query: 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHA-KILYCLDELGL----ICAY 330
F L KL Q++ + +M + Q + ++ E GL + A
Sbjct: 227 ---DPFGDMLKKLM-DQIHDHLEMPKLRRDFGTQTYEQQVVELSQDAAEAGLLEQRVYAL 282
Query: 331 EAVK----ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
+ + + ++A + R + + ++LH L L D D +
Sbjct: 283 HLRRYNDALLIHDTVRAVDALNTLRDFYNRERTTKTQILHAERWLLALFD----DHKNEL 338
Query: 387 SKAVDLGYISTKLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT 444
++ G + KL E+L+ L F IIF +A + ++++ P L +
Sbjct: 339 ARLATSGPENPKL-EVLEAILQRQFRSPDSPRGIIFTRTRQSAHSLLLWLQQQPGLQTVD 397
Query: 445 VA--YLTGS-----TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
+ LTG+ T + +T + Q+EV++ FR G +NLL AT V EEG+ +P C+ V+
Sbjct: 398 IRPQVLTGAGNNSQKTQMIQMTQRDQQEVIQKFRTGTLNLLVATSVAEEGLDIPQCNVVV 457
Query: 498 RFDLPKTVSSYIQSRGRARQHNSQFILMLERSERSV 533
R+ L S +Q+RGRAR S + + + R +
Sbjct: 458 RYGLLTNEISMVQARGRARASQSVYSFVAAQGSREL 493
>UNIPROTKB|F1NDV4 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0016925 "protein sumoylation" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR016024
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 GO:GO:0004386 GO:GO:0043021 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016925
GeneTree:ENSGT00510000046789 OMA:KCGQAWG EMBL:AADN02058700
EMBL:AADN02058701 EMBL:AADN02058702 IPI:IPI00579734
Ensembl:ENSGALT00000018067 Uniprot:F1NDV4
Length = 689
Score = 171 (65.3 bits), Expect = 8.3e-17, Sum P(2) = 8.3e-17
Identities = 44/145 (30%), Positives = 74/145 (51%)
Query: 394 YISTKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVA--YLTG 450
Y + KL +L + F K+ + IIF + +A + ++ P + + +L G
Sbjct: 355 YDNEKLMKLRNTLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIG 414
Query: 451 S--TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
+ + +T Q+EV++ FRGG +NLL AT V EEG+ + C+ VIR+ L +
Sbjct: 415 AGHNSETKPMTQNEQREVIDKFRGGSINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAM 474
Query: 509 IQSRGRARQHNSQFILMLERSERSV 533
+Q+RGRAR S + L+ +V
Sbjct: 475 VQARGRARADESTYALVASSGSGAV 499
Score = 130 (50.8 bits), Expect = 8.3e-17, Sum P(2) = 8.3e-17
Identities = 42/141 (29%), Positives = 67/141 (47%)
Query: 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120
N I L TG+GKT +AV + KD + + +I L V LV Q +R +
Sbjct: 10 NIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQH---LRKEFNPF 66
Query: 121 VEEYYGAKGVDEWDSQC---WQKEINKNDVLVMTPQILLDALRKAF-----LSLDIVCFI 172
++ +Y G+ DS+ + + + + DV++ T QIL ++L A + L I
Sbjct: 67 LKRWYQVIGLSG-DSELKISFPEVVKRYDVIICTAQILENSLLNATEEDESVRLSDFSLI 125
Query: 173 VIDECHHATGNHPYTKIMKEF 193
+IDECHH Y IM+ +
Sbjct: 126 IIDECHHTQKEGVYNNIMRRY 146
Score = 97 (39.2 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 40/147 (27%), Positives = 71/147 (48%)
Query: 110 YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIV 169
Y VI + D E++ + + V +D +I +N +L T + +++R + SL
Sbjct: 71 YQVIGLSGDSELKISF-PEVVKRYDVIICTAQILENSLLNATEED--ESVRLSDFSL--- 124
Query: 170 CFIVIDECHHATGNHPYTKIMKEFYHKS--------DNKP-----KVFGMTASPVVRKGV 216
I+IDECHH Y IM+ + + +NKP ++ G+TASP V G
Sbjct: 125 --IIIDECHHTQKEGVYNNIMRRYLKEKIKNRKQAKENKPLIPQPQILGLTASPGVG-GA 181
Query: 217 SSAMDCEGQISELESTLDS-QVFTIED 242
S E I ++ + LD+ ++ T+++
Sbjct: 182 RSNSKAEEHILKICANLDACRIMTVKE 208
>ASPGD|ASPL0000054215 [details] [associations]
symbol:dclA species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 EMBL:BN001308
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EnsemblFungi:CADANIAT00002628 Uniprot:C8VQK5
Length = 411
Score = 231 (86.4 bits), Expect = 8.8e-16, P = 8.8e-16
Identities = 58/178 (32%), Positives = 90/178 (50%)
Query: 88 KSNGFKKLI-IFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKND 146
++NG +I IFL +V L ++Q V+R + D V +GA G D W Q W + + K
Sbjct: 34 RTNGELHMISIFLVDSVTLSYKQAGVLRNNLDMNVGRIFGALGFDLWSRQTWTEFLEKYM 93
Query: 147 VLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVF 204
V+V T ++L L A + ++ + +V DE HH +H +I+++ Y + +P+V
Sbjct: 94 VVVCTAEVLYQCLLHAHIRMEQINLLVFDEAHHTKKDHVCARIIRDSYFPTAQSKRPRVL 153
Query: 205 GMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ 262
GMTASPV KG D LE LDS++ T + + V KE YD+
Sbjct: 154 GMTASPVDTKG-----DVAQAAMNLELYLDSKIATASQLSLVHQVVRRPKEEAWIYDR 206
>POMBASE|SPAC20H4.04 [details] [associations]
symbol:fml2 "ATP-dependent 3' to 5' DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=ISO]
[GO:0043138 "3'-5' DNA helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IC]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20H4.04
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG1111 GO:GO:0033567
RefSeq:NP_593624.1 ProteinModelPortal:Q9HE09
EnsemblFungi:SPAC20H4.04.1 GeneID:2542014 KEGG:spo:SPAC20H4.04
OMA:ILIVVER OrthoDB:EOG4HHSCC NextBio:20803094 Uniprot:Q9HE09
Length = 783
Score = 252 (93.8 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 132/510 (25%), Positives = 210/510 (41%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQ + E A N + L TG GKT IA +++ + + + IIFLAPT L+
Sbjct: 112 RNYQKEFCEQALFHNLLLALPTGLGKTFIAAVVMLNYFRWFPESK----IIFLAPTKPLL 167
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
QQ G D + + E N V MTPQ L + L++ L
Sbjct: 168 LQQRVACSNVAGMSPGATAELNGEVSPDRRLF--EYNTKRVFFMTPQTLQNDLKEHLLDA 225
Query: 167 -DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-VVRKGVSSAMDCEG 224
I+C ++ DE H ATGNH Y ++M+ +S++ +V G+TA+P V +DC
Sbjct: 226 KSIIC-LIFDEAHRATGNHSYAQVMRAVL-RSNSHFRVLGLTATPGSSTASVQKVVDCL- 282
Query: 225 QISEL----ESTLDSQVFTIEDK---------TEMEV----FVPSAKESCRFYDQSKFCG 267
IS+L E ++D + + K +EM + F + F Q K
Sbjct: 283 HISKLIVRNEESIDIRSYVFHKKIQLIKVTISSEMNILKSDFANLYRPYFNFLRQKKLIP 342
Query: 268 SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLI 327
+ + +++ F SL K S N K + L A I Y LD G+I
Sbjct: 343 INCECLNIKAYTLF-VSLRKYSFSSKNVQSKEKSKIMSCFTLLISC-AHITYLLDCHGII 400
Query: 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLAD-KI--FLDFGF 384
Y+ + K + +S ++LE LH L L K+ L+
Sbjct: 401 QFYQKLVETKNKAEGKGSGQSFWLFTSKPFAFYLEH-LHNKIQGLSLNHPKMNHLLELLK 459
Query: 385 DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT 444
++ K GY + ++ +F F + + ++ + A + V+ F+
Sbjct: 460 EHFKDTSEGYQNQRV----MIFTEFRNTAE-----YITTTLLA--IRPMVRASLFIGQAN 508
Query: 445 VAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
AY TG + QKE ++ FR G +N L AT + EEG+ + + +I +D +
Sbjct: 509 SAYSTG-------MNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSS 561
Query: 505 VSSYIQSRGRARQHNSQ--FILMLERSERS 532
IQ GR + S F+L+ E E S
Sbjct: 562 PIRTIQRMGRTGRKKSGKVFVLLTEDCEDS 591
Score = 38 (18.4 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 1069 LGDSVLKYAVSCHLFLTYPKKHEGQL 1094
+GD + K+A H LT G+L
Sbjct: 723 MGDKLTKFAKVPHSLLTLSIYRRGRL 748
>TAIR|locus:2092409 [details] [associations]
symbol:RTL2 "RNAse THREE-like protein 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS;IMP]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0016075
GO:GO:0006364 EMBL:AB024036 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 HSSP:O67082
EMBL:AY042815 EMBL:AY081681 IPI:IPI00517285 RefSeq:NP_566661.1
UniGene:At.8183 ProteinModelPortal:Q9LTQ0 SMR:Q9LTQ0 IntAct:Q9LTQ0
EnsemblPlants:AT3G20420.1 GeneID:821587 KEGG:ath:AT3G20420
TAIR:At3g20420 HOGENOM:HOG000237951 InParanoid:Q9LTQ0 OMA:ANISTEK
PhylomeDB:Q9LTQ0 ProtClustDB:CLSN2688595 Genevestigator:Q9LTQ0
Uniprot:Q9LTQ0
Length = 391
Score = 139 (54.0 bits), Expect = 9.2e-16, Sum P(4) = 9.2e-16
Identities = 31/80 (38%), Positives = 47/80 (58%)
Query: 1275 LYKHLQHCSTLLLSQITEYVKSFPKPGETTDS-GPSMKAPKALGDLLESIVGAVLIDTKL 1333
LY L+ + L ++ E+ ++ K + + S G +KAPK L DL ES+ GAV +D
Sbjct: 145 LYSFLRRNAPSLDEKVKEFSEAVGKEDDLSVSYGGLVKAPKVLADLFESLAGAVYVDVNF 204
Query: 1334 NLDEVWRIFKPILSPIVTPD 1353
+L +W IF+ +L PIVT D
Sbjct: 205 DLQRLWVIFRGLLEPIVTLD 224
Score = 126 (49.4 bits), Expect = 9.2e-16, Sum P(4) = 9.2e-16
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 1046 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1105
SL+ EA+T C + S ERLE +GDS + A+S +L+LTYP LS R+ V
Sbjct: 75 SLLKEAITHTSCTDFPSYERLEFIGDSAIGLAISNYLYLTYPSLEPHDLSLLRAANVSTE 134
Query: 1106 TLHKLGTDRKLQGYIRDSA 1124
L ++ + L ++R +A
Sbjct: 135 KLARVSLNHGLYSFLRRNA 153
Score = 79 (32.9 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 1234 VPRINEIKDIES--KI-GYEFTVKFLLQEAITHASVQEFYCYQNL 1275
VP +E++ +E+ KI Y+F+ K LL+EAITH S +F Y+ L
Sbjct: 51 VPVSSEMESMEAVEKILNYKFSNKSLLKEAITHTSCTDFPSYERL 95
Score = 61 (26.5 bits), Expect = 9.2e-16, Sum P(4) = 9.2e-16
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 1497 RTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVEC 1556
+T L ++C WP P + E +S +G KR FV + I E +
Sbjct: 315 KTKLNEICLKKKWPKPIYSVEEDRSSV-----QG--KR-----FVCSAKIKITEEKTLYM 362
Query: 1557 NGDPRADKKSSFDSAALIMLHELER 1581
GD ++ K + S+A M+ L +
Sbjct: 363 KGDEQSKIKKAESSSAYHMIRALRK 387
Score = 48 (22.0 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 1154 LDGKFFTQDTKVVVGKPCDMGHRWMG----SKTIADCAEALIGAYYV 1196
LD K ++ VGK D+ + G K +AD E+L GA YV
Sbjct: 156 LDEK--VKEFSEAVGKEDDLSVSYGGLVKAPKVLADLFESLAGAVYV 200
Score = 44 (20.5 bits), Expect = 9.2e-16, Sum P(4) = 9.2e-16
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 610 LPSNAP---FQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLL 653
LPS+A F + P++ + +S ++ +EA EK+ N LL
Sbjct: 31 LPSSADIHRFYNSLSPSAPSVPVSSEMESMEAVEKILNYKFSNKSLL 77
>UNIPROTKB|D4ADT5 [details] [associations]
symbol:Ddx58 "Protein Ddx58" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR007087 InterPro:IPR011545 Pfam:PF00270
PROSITE:PS00028 RGD:1309460 GO:GO:0005524 GO:GO:0008270
GO:GO:0003676 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00510000046789 IPI:IPI00778544
Ensembl:ENSRNOT00000060765 ArrayExpress:D4ADT5 Uniprot:D4ADT5
Length = 596
Score = 234 (87.4 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 67/219 (30%), Positives = 114/219 (52%)
Query: 35 PSSSTNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK 93
P++S + + PR YQL++ AK+ +NT+ TG GKT +++++ + + +G K
Sbjct: 235 PNNSHSPLK--PRNYQLELALPAKKGKNTVICAPTGCGKTFVSLLICEHHLKNFP-HGQK 291
Query: 94 KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
++F A + + QQ V + + G G D+ Q I ND++++TPQ
Sbjct: 292 GKVVFFANQIPVYEQQATVFSRYFERFGYNVAGISGATA-DNVSVQHIIENNDIVILTPQ 350
Query: 154 ILLDALRK-AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HK----SDNKPKVFGMT 207
IL+++L A SL + ++ DECH+ + +HPY +IM + HK D P+V G+T
Sbjct: 351 ILVNSLNNGAIPSLSVFTLMIFDECHNTSKHHPYNQIMFRYLDHKLGGSPDPLPQVIGLT 410
Query: 208 ASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIEDKTE 245
AS V G + + I +L + LD+ V T+ D E
Sbjct: 411 AS--VGVGDAKTEEAMLHICKLCAALDASVIATVRDNVE 447
>UNIPROTKB|F5H5W6 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
GO:GO:0005524 GO:GO:0003676 EMBL:AL161783 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL353671
HGNC:HGNC:19102 ChiTaRS:DDX58 IPI:IPI01012440
ProteinModelPortal:F5H5W6 SMR:F5H5W6 Ensembl:ENST00000545044
UCSC:uc011lnr.1 ArrayExpress:F5H5W6 Bgee:F5H5W6 Uniprot:F5H5W6
Length = 536
Score = 231 (86.4 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 79/281 (28%), Positives = 135/281 (48%)
Query: 37 SSTNSIN-FIPRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK 94
S TN + F PR YQL++ K +NTI TG GKT +++++ + + G K
Sbjct: 30 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ-GQKG 88
Query: 95 LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
++F A + + QQ V + + G G ++ ++ + ND++++TPQI
Sbjct: 89 KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA-ENVPVEQIVENNDIIILTPQI 147
Query: 155 LLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTA 208
L++ L+K + SL I ++ DECH+ + HPY IM + + S P+V G+TA
Sbjct: 148 LVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA 207
Query: 209 SPVV--RKGVSSAMDCEGQISELESTLDSQVF-TIE---DKTEMEVFVPSA---KESCRF 259
S V K A+D I +L ++LD+ V T++ ++ E V+ P K R
Sbjct: 208 SVGVGDAKNTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 264
Query: 260 YDQSKFCGSDLKGKLEVSWSKF--DA-SLSKLQGSQLNCYK 297
D+ K+ + L E + D +LS++Q + K
Sbjct: 265 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 305
Score = 127 (49.8 bits), Expect = 0.00038, P = 0.00038
Identities = 80/337 (23%), Positives = 149/337 (44%)
Query: 201 PKVFGMTASPVV--RKGVSSAMDCEGQISELESTLDSQVF-TIE---DKTEMEVFVPSA- 253
P+V G+TAS V K A+D I +L ++LD+ V T++ ++ E V+ P
Sbjct: 200 PQVIGLTASVGVGDAKNTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKF 256
Query: 254 --KESCRFYDQSKFCGSDLKGKLEVSWSKF--DA-SLSKLQGSQLNCYKDMDDKHKTLRK 308
K R D+ K+ + L E + D +LS++Q + K + T++K
Sbjct: 257 FRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK-YEQWIVTVQK 315
Query: 309 QLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY-FLEEVLHV 367
+ + DE IC +A+ + + K + I + ++ +L++
Sbjct: 316 ACMVFQ---MPDKDEESRIC--KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSN 370
Query: 368 IGSALPLADKIFLDFGFDYS-KAVDLGYIST-------KLHELLQLFLS-FGKSTQVLCI 418
+ +A D+I D + K +L +S KL +L + + + + + I
Sbjct: 371 VRAAG--FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 428
Query: 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVLESFRG-GKV 475
+FV+ ++ +++ P L+ L LTG T +T QK +L++F+ G
Sbjct: 429 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH 488
Query: 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
N+L AT V +EG+ + C+ VI ++ V IQ+R
Sbjct: 489 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 525
Score = 49 (22.3 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 21/86 (24%), Positives = 37/86 (43%)
Query: 831 NWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSP---CRTSPCK-TGCHGKDVI-HLAN 885
NW NP S F+K G + N N G + P C K +G H + +A+
Sbjct: 442 NWIEGNPKLS---FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 498
Query: 886 GSVDAKNLKDMVVLAIHTGRIYSIVE 911
+D ++V+L + G + +++
Sbjct: 499 EGIDIAQC-NLVILYEYVGNVIKMIQ 523
>UNIPROTKB|E2QXT4 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00510000046789 OMA:ELRPYQW EMBL:AAEX03006454
Ensembl:ENSCAFT00000024900 Uniprot:E2QXT4
Length = 680
Score = 161 (61.7 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 47/160 (29%), Positives = 81/160 (50%)
Query: 401 ELLQLFL--SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTV-AYL---TGSTTS 454
E+L+ L FG S IIF + + + ++++ P L + + A L G+++
Sbjct: 354 EMLEQILREQFGHSDSPRGIIFTQTRQSTHSLLLWLQQQPGLQTVDIRADLLIGAGNSSQ 413
Query: 455 VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+T + Q+EV+ FR G +NLL AT V EEG+ +P C+ V+R+ L S +Q+RGR
Sbjct: 414 NTHMTQRDQQEVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVVRYGLLSNEISMVQARGR 473
Query: 515 ARQHNSQFILMLERSERSVTDTALSRDPEACFLKACTYVK 554
AR S + + + R + ++ E +A V+
Sbjct: 474 ARAGRSIYSFVATQGSRELRRELINEVLETLMERAVAAVQ 513
Score = 124 (48.7 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 52/194 (26%), Positives = 83/194 (42%)
Query: 47 RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
R YQ +V A + +N I L TGAGKT A + K + + K+++ L VHL
Sbjct: 6 RPYQWEVIMPALEGKNIIVWLPTGAGKTRAAAYVAKRHLETVDQ---AKVVV-LVNRVHL 61
Query: 106 VHQQYDVIR--VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
V Q + + + + G G +D+++ T ++L AL
Sbjct: 62 VTQHCEEFSRMLGKRWAIITLSGDMGPRAGFGHL----ARSHDLIICTAELLQMALTSPE 117
Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY-HKSDNK---PKVFGMTASPVVRKG 215
+ + L+ +V+DECHH + Y I+ + HK P+V G+TASP G
Sbjct: 118 EEEHVELNAFSLLVVDECHHTHKDTVYNLILSRYLEHKLQRTRPLPQVLGLTASP----G 173
Query: 216 VSSAMDCEGQISEL 229
A +G I +
Sbjct: 174 TGGASTLDGAIDHI 187
>UNIPROTKB|A2A376 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0043330 "response to
exogenous dsRNA" evidence=IEA] [GO:0045087 "innate immune response"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00382 SMART:SM00490
GO:GO:0005524 GO:GO:0003727 GO:GO:0045087 GO:GO:0009615
EMBL:AL161783 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
GO:GO:0032728 EMBL:AL353671 HGNC:HGNC:19102 HOGENOM:HOG000230911
HOVERGEN:HBG052325 ChiTaRS:DDX58 IPI:IPI01009182 SMR:A2A376
Ensembl:ENST00000379868 Uniprot:A2A376
Length = 722
Score = 231 (86.4 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 79/281 (28%), Positives = 135/281 (48%)
Query: 37 SSTNSIN-FIPRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK 94
S TN + F PR YQL++ K +NTI TG GKT +++++ + + G K
Sbjct: 30 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ-GQKG 88
Query: 95 LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
++F A + + QQ V + + G G ++ ++ + ND++++TPQI
Sbjct: 89 KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA-ENVPVEQIVENNDIIILTPQI 147
Query: 155 LLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTA 208
L++ L+K + SL I ++ DECH+ + HPY IM + + S P+V G+TA
Sbjct: 148 LVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA 207
Query: 209 SPVV--RKGVSSAMDCEGQISELESTLDSQVF-TIE---DKTEMEVFVPSA---KESCRF 259
S V K A+D I +L ++LD+ V T++ ++ E V+ P K R
Sbjct: 208 SVGVGDAKNTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 264
Query: 260 YDQSKFCGSDLKGKLEVSWSKF--DA-SLSKLQGSQLNCYK 297
D+ K+ + L E + D +LS++Q + K
Sbjct: 265 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 305
Score = 151 (58.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 85/350 (24%), Positives = 156/350 (44%)
Query: 201 PKVFGMTASPVV--RKGVSSAMDCEGQISELESTLDSQVF-TIE---DKTEMEVFVPSA- 253
P+V G+TAS V K A+D I +L ++LD+ V T++ ++ E V+ P
Sbjct: 200 PQVIGLTASVGVGDAKNTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKF 256
Query: 254 --KESCRFYDQSKFCGSDLKGKLEVSWSKF--DA-SLSKLQGSQLNCYKDMDDKHKTLRK 308
K R D+ K+ + L E + D +LS++Q + K + T++K
Sbjct: 257 FRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK-YEQWIVTVQK 315
Query: 309 QLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY-FLEEVLHV 367
+ + DE IC +A+ + + K + I + ++ +L++
Sbjct: 316 ACMVFQ---MPDKDEESRIC--KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSN 370
Query: 368 IGSALPLADKIFLDFGFDYS-KAVDLGYIST-------KLHELLQLFLS-FGKSTQVLCI 418
+ +A D+I D + K +L +S KL +L + + + + + I
Sbjct: 371 VRAAG--FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 428
Query: 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVLESFRG-GKV 475
+FV+ ++ +++ P L+ L LTG T +T QK +L++F+ G
Sbjct: 429 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH 488
Query: 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
N+L AT V +EG+ + C+ VI ++ V IQ+RGR R S+ L+
Sbjct: 489 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 538
Score = 52 (23.4 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 27/119 (22%), Positives = 45/119 (37%)
Query: 831 NWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSP---CRTSPCK-TGCHGKDVI-HLAN 885
NW NP S F+K G + N N G + P C K +G H + +A+
Sbjct: 442 NWIEGNPKLS---FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 498
Query: 886 GSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESP----FDGNTDDDSKTFVNYFSEK 940
+D ++V+L + G + +++ A N K +N + EK
Sbjct: 499 EGIDIAQC-NLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 556
>UNIPROTKB|Q8IYD8 [details] [associations]
symbol:FANCM "Fanconi anemia group M protein" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071821 "FANCM-MHF
complex" evidence=IDA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IMP] [GO:0031297 "replication
fork processing" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00891
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 GO:GO:0003682
GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
Orphanet:84 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
PDB:4DRB PDBsum:4DRB InterPro:IPR010994 SUPFAM:SSF47781
EMBL:DQ140356 EMBL:AK093422 EMBL:BC036056 EMBL:AB046816
IPI:IPI00176581 IPI:IPI00217755 RefSeq:NP_065988.1
UniGene:Hs.509229 PDB:4DAY PDBsum:4DAY ProteinModelPortal:Q8IYD8
SMR:Q8IYD8 IntAct:Q8IYD8 STRING:Q8IYD8 PhosphoSite:Q8IYD8
DMDM:78099254 PaxDb:Q8IYD8 PRIDE:Q8IYD8 DNASU:57697
Ensembl:ENST00000267430 Ensembl:ENST00000556036 GeneID:57697
KEGG:hsa:57697 UCSC:uc001wwc.2 UCSC:uc001wwd.4 CTD:57697
GeneCards:GC14P045605 HGNC:HGNC:23168 MIM:609644 MIM:614087
neXtProt:NX_Q8IYD8 PharmGKB:PA134943156 eggNOG:COG1948
HOGENOM:HOG000112498 HOVERGEN:HBG081520 InParanoid:Q8IYD8 KO:K10896
OMA:QMGMRSL OrthoDB:EOG4C5CHK GenomeRNAi:57697 NextBio:64551
ArrayExpress:Q8IYD8 Bgee:Q8IYD8 CleanEx:HS_FANCM
Genevestigator:Q8IYD8 GermOnline:ENSG00000187790
Gene3D:3.40.50.10130 Uniprot:Q8IYD8
Length = 2048
Score = 184 (69.8 bits), Expect = 6.7e-15, Sum P(3) = 6.7e-15
Identities = 66/216 (30%), Positives = 110/216 (50%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL + A NT+ L TG GKT IA +++ + + S ++F+APT LV
Sbjct: 92 RDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK----VVFMAPTKPLV 147
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEI--NKNDVLVMTPQILLDAL-RKAF 163
QQ + + + + + A+ + +KEI +K VL +TPQ++++ L R A
Sbjct: 148 TQQIEAC--YQVMGIPQSHMAEMTGSTQAST-RKEIWCSKR-VLFLTPQVMVNDLSRGAC 203
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR-KGVSSAMD- 221
+ +I C +VIDE H A GN+ Y ++++E K N ++ ++A+P K V +
Sbjct: 204 PAAEIKC-LVIDEAHKALGNYAYCQVVRELV-KYTNHFRILALSATPGSDIKAVQQVITN 261
Query: 222 -CEGQISELESTLDSQVFTIEDKTEME-VFVPSAKE 255
GQI EL S + T + ++E + VP +E
Sbjct: 262 LLIGQI-ELRSEDSPDILTYSHERKVEKLIVPLGEE 296
Score = 118 (46.6 bits), Expect = 6.7e-15, Sum P(3) = 6.7e-15
Identities = 37/126 (29%), Positives = 60/126 (47%)
Query: 411 KSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLT-VAYLTGSTTSVDALTPKVQKEVLE 468
K + +IF R ++ E + P + +T V + +G +T T K Q EV++
Sbjct: 473 KRDETRVMIFSSFRDSVQEIAEMLSQHQPIIRVMTFVGHASGKSTK--GFTQKEQLEVVK 530
Query: 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNSQFILMLE 527
FR G N L +T V EEG+ + +I FD K+ +Q GR R+ + +++L
Sbjct: 531 QFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILS 590
Query: 528 --RSER 531
R ER
Sbjct: 591 EGREER 596
Score = 46 (21.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 34/187 (18%), Positives = 72/187 (38%)
Query: 500 DLPKTVSSYIQSRGRARQHNSQFILMLE--RSERSVTDTALSRDPEACFLKACT--YVKT 555
+L + + Y+ S N Q +L+ E ++ + A ++K+ +
Sbjct: 1517 ELSEEDAEYVSSDENDESENEQDSSLLDFLNDETQLSQAINDSEMRAIYMKSLRSPMMNN 1576
Query: 556 KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKP-IFKYKSAEEAYECELTLPSNA 614
K ++ T ++ S I E D + + K +S+EE + L ++
Sbjct: 1577 KYKMIHKTHKNINIFSQ---IPEQDETYLEDSFCVDEEESCKGQSSEEEVCVDFNLITDD 1633
Query: 615 PFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPG 674
F +R + K+++ + C H L+ +LP ENN+ K+ ++
Sbjct: 1634 CFANSKKYKTRRAVMLKEMM-EQNCA--HSKKKLSRIILPDDSSEEENNVNDKRESNIAV 1690
Query: 675 AGTTKRK 681
+T +K
Sbjct: 1691 NPSTVKK 1697
Score = 45 (20.9 bits), Expect = 6.7e-15, Sum P(3) = 6.7e-15
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 543 EACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEML 583
E C L C Y+ + +VE S +S VN +++ E +
Sbjct: 1846 EVCPLNGCDYIVSNRMVVERRSQSEMLNS-VNK-NKFIEQI 1884
Score = 40 (19.1 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 789 KSSGSREFFLKRETNSLWSPSY 810
+SS +++FL E LW+ Y
Sbjct: 671 QSSLKKDWFLSEEEFKLWNRLY 692
Score = 39 (18.8 bits), Expect = 2.7e-14, Sum P(3) = 2.7e-14
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 598 KSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQ 632
K ++ C ++PS + Q+ V T R L+KQ
Sbjct: 1696 KKNKQQDHCLNSVPSGSSAQSKVRSTPRVNPLAKQ 1730
>UNIPROTKB|B3KWW1 [details] [associations]
symbol:DDX58 "cDNA FLJ44001 fis, clone TESTI4022716, highly
similar to Probable ATP-dependent RNA helicase DDX58 (EC 3.6.1.-)"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AL161783 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL353671 UniGene:Hs.190622
HGNC:HGNC:19102 HOVERGEN:HBG052325 ChiTaRS:DDX58 IPI:IPI01009182
EMBL:AK125989 SMR:B3KWW1 STRING:B3KWW1 Ensembl:ENST00000542096
UCSC:uc010mji.3 Uniprot:B3KWW1
Length = 854
Score = 231 (86.4 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
Identities = 79/281 (28%), Positives = 135/281 (48%)
Query: 37 SSTNSIN-FIPRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK 94
S TN + F PR YQL++ K +NTI TG GKT +++++ + + G K
Sbjct: 162 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ-GQKG 220
Query: 95 LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
++F A + + QQ V + + G G ++ ++ + ND++++TPQI
Sbjct: 221 KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA-ENVPVEQIVENNDIIILTPQI 279
Query: 155 LLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTA 208
L++ L+K + SL I ++ DECH+ + HPY IM + + S P+V G+TA
Sbjct: 280 LVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA 339
Query: 209 SPVV--RKGVSSAMDCEGQISELESTLDSQVF-TIE---DKTEMEVFVPSA---KESCRF 259
S V K A+D I +L ++LD+ V T++ ++ E V+ P K R
Sbjct: 340 SVGVGDAKNTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 396
Query: 260 YDQSKFCGSDLKGKLEVSWSKF--DA-SLSKLQGSQLNCYK 297
D+ K+ + L E + D +LS++Q + K
Sbjct: 397 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 437
Score = 151 (58.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 85/350 (24%), Positives = 156/350 (44%)
Query: 201 PKVFGMTASPVV--RKGVSSAMDCEGQISELESTLDSQVF-TIE---DKTEMEVFVPSA- 253
P+V G+TAS V K A+D I +L ++LD+ V T++ ++ E V+ P
Sbjct: 332 PQVIGLTASVGVGDAKNTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKF 388
Query: 254 --KESCRFYDQSKFCGSDLKGKLEVSWSKF--DA-SLSKLQGSQLNCYKDMDDKHKTLRK 308
K R D+ K+ + L E + D +LS++Q + K + T++K
Sbjct: 389 FRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK-YEQWIVTVQK 447
Query: 309 QLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY-FLEEVLHV 367
+ + DE IC +A+ + + K + I + ++ +L++
Sbjct: 448 ACMVFQ---MPDKDEESRIC--KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSN 502
Query: 368 IGSALPLADKIFLDFGFDYS-KAVDLGYIST-------KLHELLQLFLS-FGKSTQVLCI 418
+ +A D+I D + K +L +S KL +L + + + + + I
Sbjct: 503 VRAAG--FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 560
Query: 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVLESFRG-GKV 475
+FV+ ++ +++ P L+ L LTG T +T QK +L++F+ G
Sbjct: 561 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH 620
Query: 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
N+L AT V +EG+ + C+ VI ++ V IQ+RGR R S+ L+
Sbjct: 621 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 670
Score = 52 (23.4 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
Identities = 27/119 (22%), Positives = 45/119 (37%)
Query: 831 NWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSP---CRTSPCK-TGCHGKDVI-HLAN 885
NW NP S F+K G + N N G + P C K +G H + +A+
Sbjct: 574 NWIEGNPKLS---FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 630
Query: 886 GSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESP----FDGNTDDDSKTFVNYFSEK 940
+D ++V+L + G + +++ A N K +N + EK
Sbjct: 631 EGIDIAQC-NLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 688
>CGD|CAL0005976 [details] [associations]
symbol:MPH1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0000725 "recombinational
repair" evidence=IEA] [GO:0060543 "negative regulation of strand
invasion" evidence=IEA] [GO:0070336 "flap-structured DNA binding"
evidence=IEA] [GO:0043138 "3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0005976 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006281 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 EMBL:AACQ01000084 EMBL:AACQ01000083
KO:K14635 RefSeq:XP_715573.1 RefSeq:XP_715628.1
ProteinModelPortal:Q5A1A0 STRING:Q5A1A0 GeneID:3642769
GeneID:3642817 KEGG:cal:CaO19.10436 KEGG:cal:CaO19.2919
Uniprot:Q5A1A0
Length = 1187
Score = 171 (65.3 bits), Expect = 7.9e-15, Sum P(2) = 7.9e-15
Identities = 69/245 (28%), Positives = 111/245 (45%)
Query: 18 PNPPDMGSSGHDHAVDGPSSSTN--SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMI 75
P P + + H HA+D + T NF R YQ + E A N + L TG GKT I
Sbjct: 108 PVPVKINTPTH-HAMDFENLKTYIYPTNFEIRDYQYNIVERAFYDNLLVALPTGLGKTFI 166
Query: 76 AVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS 135
A ++ + + K IIF+APT LV QQ + A +D+
Sbjct: 167 ASTVMLNFLRWFP---ISK-IIFMAPTRPLVAQQIKACCSIAGIPSSKV--AILLDKTRR 220
Query: 136 QCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194
+ EI N V TPQ++ + L ++ + +VIDE H A GN+ Y ++K F
Sbjct: 221 N--RAEIWNSRQVFFTTPQVVENDLASGVVNPKSIALLVIDEAHRAKGNYSYNNVVK-FI 277
Query: 195 HKSDNKPKVFGMTASPVVR-KGVSSAMDCEGQISELESTLDSQVFTIED---KT-EMEVF 249
++ + ++ +TA+P +GV +D IS++E + + + KT E +
Sbjct: 278 NRFSDSYRILALTATPASDVEGVQQIID-NLNISKVEVRTEQSIDIVRHMKRKTVERKTC 336
Query: 250 VPSAK 254
PS++
Sbjct: 337 YPSSE 341
Score = 117 (46.2 bits), Expect = 7.9e-15, Sum P(2) = 7.9e-15
Identities = 24/91 (26%), Positives = 48/91 (52%)
Query: 449 TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
+ + ++ K+QKE+++ F+ G N+L AT + EEG+ + +I +D +
Sbjct: 567 SSENAQMTGMSQKLQKEIIKKFKKGVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKN 626
Query: 509 IQSRGRA-RQHNSQFILMLERSERSVTDTAL 538
IQ GR R+ + + +++ +E S D A+
Sbjct: 627 IQRMGRTGRKRDGKVLMLFSSNEESKFDKAM 657
>UNIPROTKB|O95786 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0043330 "response
to exogenous dsRNA" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IDA;IMP] [GO:0002230 "positive regulation of
defense response to virus by host" evidence=IMP] [GO:0032727
"positive regulation of interferon-alpha production"
evidence=IDA;IMP] [GO:0045087 "innate immune response"
evidence=IMP;TAS] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0039528 "cytoplasmic
pattern recognition receptor signaling pathway in response to
virus" evidence=TAS] [GO:0003725 "double-stranded RNA binding"
evidence=IMP;IDA;TAS] [GO:0030334 "regulation of cell migration"
evidence=IDA] [GO:0005923 "tight junction" evidence=IDA]
[GO:0032587 "ruffle membrane" evidence=IDA] [GO:0015629 "actin
cytoskeleton" evidence=IDA] [GO:0039529 "RIG-I signaling pathway"
evidence=IMP] [GO:0003727 "single-stranded RNA binding"
evidence=IMP] [GO:0009615 "response to virus" evidence=TAS]
[GO:0034344 "regulation of type III interferon production"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0032480
"negative regulation of type I interferon production" evidence=TAS]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0051091
"positive regulation of sequence-specific DNA binding transcription
factor activity" evidence=IC] [GO:0042993 "positive regulation of
transcription factor import into nucleus" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0009597 "detection of virus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0051091 GO:GO:0046872 GO:GO:0015629
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0045087
GO:GO:0002230 GO:GO:0030334 GO:GO:0005923 EMBL:AL161783
EMBL:CH471071 GO:GO:0003690 Reactome:REACT_107772 GO:GO:0032587
GO:GO:0003725 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0032480
GO:GO:0008026 GO:GO:0042993 GO:GO:0043330 GO:GO:0032727
eggNOG:COG1111 GO:GO:0032728 EMBL:AF038963 EMBL:AL353671
EMBL:BC132786 EMBL:BC136610 EMBL:BX647917 EMBL:AL137608
IPI:IPI00295503 IPI:IPI00654731 PIR:T46312 RefSeq:NP_055129.2
UniGene:Hs.190622 PDB:2LWD PDB:2LWE PDB:2QFB PDB:2QFD PDB:2RMJ
PDB:2YKG PDB:3LRN PDB:3LRR PDB:3NCU PDB:3OG8 PDB:3TMI PDB:4AY2
PDBsum:2LWD PDBsum:2LWE PDBsum:2QFB PDBsum:2QFD PDBsum:2RMJ
PDBsum:2YKG PDBsum:3LRN PDBsum:3LRR PDBsum:3NCU PDBsum:3OG8
PDBsum:3TMI PDBsum:4AY2 ProteinModelPortal:O95786 SMR:O95786
DIP:DIP-35444N IntAct:O95786 MINT:MINT-2799116 STRING:O95786
PhosphoSite:O95786 PaxDb:O95786 PRIDE:O95786
Ensembl:ENST00000379882 Ensembl:ENST00000379883 GeneID:23586
KEGG:hsa:23586 UCSC:uc003zra.3 UCSC:uc010mjk.1 CTD:23586
GeneCards:GC09M032447 HGNC:HGNC:19102 HPA:CAB012643 MIM:609631
neXtProt:NX_O95786 PharmGKB:PA134994272 HOGENOM:HOG000230911
HOVERGEN:HBG052325 InParanoid:O95786 KO:K12646 OMA:KCKAFAC
OrthoDB:EOG4SQWW0 PhylomeDB:O95786 ChiTaRS:DDX58
EvolutionaryTrace:O95786 GenomeRNAi:23586 NextBio:46208
ArrayExpress:O95786 Bgee:O95786 CleanEx:HS_DDX58
Genevestigator:O95786 GermOnline:ENSG00000107201 GO:GO:0009597
GO:GO:0034344 GO:GO:0039529 Uniprot:O95786
Length = 925
Score = 231 (86.4 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 79/281 (28%), Positives = 135/281 (48%)
Query: 37 SSTNSIN-FIPRIYQLKV-FEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK 94
S TN + F PR YQL++ K +NTI TG GKT +++++ + + G K
Sbjct: 233 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ-GQKG 291
Query: 95 LIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQI 154
++F A + + QQ V + + G G ++ ++ + ND++++TPQI
Sbjct: 292 KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA-ENVPVEQIVENNDIIILTPQI 350
Query: 155 LLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTA 208
L++ L+K + SL I ++ DECH+ + HPY IM + + S P+V G+TA
Sbjct: 351 LVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA 410
Query: 209 SPVV--RKGVSSAMDCEGQISELESTLDSQVF-TIE---DKTEMEVFVPSA---KESCRF 259
S V K A+D I +L ++LD+ V T++ ++ E V+ P K R
Sbjct: 411 SVGVGDAKNTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 467
Query: 260 YDQSKFCGSDLKGKLEVSWSKF--DA-SLSKLQGSQLNCYK 297
D+ K+ + L E + D +LS++Q + K
Sbjct: 468 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
Score = 151 (58.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 85/350 (24%), Positives = 156/350 (44%)
Query: 201 PKVFGMTASPVV--RKGVSSAMDCEGQISELESTLDSQVF-TIE---DKTEMEVFVPSA- 253
P+V G+TAS V K A+D I +L ++LD+ V T++ ++ E V+ P
Sbjct: 403 PQVIGLTASVGVGDAKNTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKF 459
Query: 254 --KESCRFYDQSKFCGSDLKGKLEVSWSKF--DA-SLSKLQGSQLNCYKDMDDKHKTLRK 308
K R D+ K+ + L E + D +LS++Q + K + T++K
Sbjct: 460 FRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK-YEQWIVTVQK 518
Query: 309 QLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY-FLEEVLHV 367
+ + DE IC +A+ + + K + I + ++ +L++
Sbjct: 519 ACMVFQ---MPDKDEESRIC--KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSN 573
Query: 368 IGSALPLADKIFLDFGFDYS-KAVDLGYIST-------KLHELLQLFLS-FGKSTQVLCI 418
+ +A D+I D + K +L +S KL +L + + + + + I
Sbjct: 574 VRAAG--FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 631
Query: 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVLESFRG-GKV 475
+FV+ ++ +++ P L+ L LTG T +T QK +L++F+ G
Sbjct: 632 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH 691
Query: 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
N+L AT V +EG+ + C+ VI ++ V IQ+RGR R S+ L+
Sbjct: 692 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
Score = 52 (23.4 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 27/119 (22%), Positives = 45/119 (37%)
Query: 831 NWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSP---CRTSPCK-TGCHGKDVI-HLAN 885
NW NP S F+K G + N N G + P C K +G H + +A+
Sbjct: 645 NWIEGNPKLS---FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
Query: 886 GSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESP----FDGNTDDDSKTFVNYFSEK 940
+D ++V+L + G + +++ A N K +N + EK
Sbjct: 702 EGIDIAQC-NLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
>UNIPROTKB|A4RN08 [details] [associations]
symbol:MPH1 "ATP-dependent DNA helicase MPH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0008026 eggNOG:COG1111
KO:K14635 OrthoDB:EOG4JHGPV RefSeq:XP_003713523.1
ProteinModelPortal:A4RN08 STRING:A4RN08 EnsemblFungi:MGG_04429T0
GeneID:2678216 KEGG:mgr:MGG_04429 Uniprot:A4RN08
Length = 1102
Score = 183 (69.5 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 64/238 (26%), Positives = 107/238 (44%)
Query: 4 PLNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSST--NSINFIP-RIYQLKVFEVAKRR 60
PL + R+ + PP++ + H HA+D + T N P R YQ + +
Sbjct: 98 PLGTQPRNSRVFRADLPPEVPT--H-HALDPEALKTWVYPTNLGPIRDYQFSIVKNGLFN 154
Query: 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120
NT+ L TG GKT IA +I + + ++ ++F+APT L QQ +
Sbjct: 155 NTLVALPTGLGKTFIAATVILNFFRWTRN----AQMVFVAPTKPLASQQVEACLNIAGIP 210
Query: 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHA 180
+ G E + E + MTPQ L++ L K + + +V+DE H A
Sbjct: 211 RSQSTLLTG--ETKPVLREAEWEGKRLFFMTPQTLMNDLSKGYADPKRIVLLVVDEAHRA 268
Query: 181 TGNHPYTKIMKEFYHKSDNKPKVFGMTASP-VVRKGVSSAMDCEGQISELESTLDSQV 237
TG++ Y K++ EF + +V +TA+P +GV +D G +S +E + +
Sbjct: 269 TGDYAYVKVI-EFIRRFSKSFRVLALTATPGSTVEGVQDVIDNLG-VSHVEIRTEESI 324
Score = 109 (43.4 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 46/195 (23%), Positives = 81/195 (41%)
Query: 402 LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK-KVPFLTHLTVAYLTGSTTSVDALTP 460
LL F+ G+ + I+F E +A+ + R + P ++ S S + +
Sbjct: 491 LLNYFMDAGEGSSTRVIVFSEYRDSAEEITRVLNVHKPMISASLFVGQADSKKS-EGMKQ 549
Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
K Q E + FR G N+L AT + EEG+ + +I +D + +Q GR + +
Sbjct: 550 KQQIETIAKFRDGIFNVLVATSIGEEGLDIGQVDLIICYDASSSPIRMLQRMGRTGRKRA 609
Query: 521 QFILMLERSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYC 580
I +L + + A ++D Y K + I E + + D S ++ R
Sbjct: 610 GKITLLLMKGKEEDNYAKAQD---------NYEKMQKLICEGSRFNFRHDLSSRIVPR-- 658
Query: 581 EMLPS-DKYYTPKPI 594
++ P DK PI
Sbjct: 659 DVKPEVDKRMVEIPI 673
Score = 39 (18.8 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 1452 PEPPSCKRQKGTEAA 1466
P PP KR+ T AA
Sbjct: 872 PPPPGRKRKANTTAA 886
Score = 39 (18.8 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 270 LKGKLEVSWSKFDASLSKLQ-----GSQLNCYKDMDDK 302
+KGK E +++K + K+Q GS+ N D+ +
Sbjct: 617 MKGKEEDNYAKAQDNYEKMQKLICEGSRFNFRHDLSSR 654
>UNIPROTKB|E2RNF7 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071821 "FANCM-MHF complex" evidence=IEA]
[GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA]
[GO:0031297 "replication fork processing" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0031297 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821
GO:GO:0043240 InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697
KO:K10896 Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530
EMBL:AAEX03005706 RefSeq:XP_537429.2 Ensembl:ENSCAFT00000022327
GeneID:480307 KEGG:cfa:480307 Uniprot:E2RNF7
Length = 2047
Score = 176 (67.0 bits), Expect = 5.7e-14, Sum P(3) = 5.7e-14
Identities = 52/167 (31%), Positives = 94/167 (56%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL++ + NT+ L TG GKT IA +++ + + S ++F+APT LV
Sbjct: 92 RDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK----VVFMAPTKPLV 147
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW-QKEINKND-VLVMTPQILLDAL-RKAF 163
QQ + + + + + A+ +Q + +KEI ++ VL +TPQ++++ L R A
Sbjct: 148 TQQIEAC--YRVMGIPQSHMAEMTGT--TQAFTRKEIWRSKRVLFLTPQVMVNDLSRGAC 203
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
+ +I C +VIDE H A GN+ Y ++++E + K N ++ ++A+P
Sbjct: 204 PAAEIKC-LVIDEAHKALGNYAYCQVVRELF-KYTNHFRILALSATP 248
Score = 119 (46.9 bits), Expect = 5.7e-14, Sum P(3) = 5.7e-14
Identities = 37/127 (29%), Positives = 62/127 (48%)
Query: 411 KSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLT-VAYLTGSTTSVDALTPKVQKEVLE 468
K + +IF R ++ E ++ P + +T V + +G S+ T K Q EV++
Sbjct: 473 KCDETRVMIFSSFRDSVQEIAEMLLQHQPVIRVMTFVGHASGK--SMKGFTQKEQLEVVK 530
Query: 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNSQFILMLE 527
FR G N L +T V EEG+ + +I FD K+ +Q GR R+ + +++L
Sbjct: 531 QFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGRKRKGRIVVILA 590
Query: 528 --RSERS 532
R ER+
Sbjct: 591 EGREERT 597
Score = 44 (20.5 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 1520 KSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVEC----NGDPR 1561
K R +++ EG E+RT S +K +++ GN + G PR
Sbjct: 582 KGRIVVILAEGREERTYNQSQSNKRSIYKAISGNRQVLHFYQGSPR 627
Score = 43 (20.2 bits), Expect = 5.7e-14, Sum P(3) = 5.7e-14
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 543 EACFLKACTYVKTKSYIVESTGASVTTDS 571
E C L C Y+ + +VE S +S
Sbjct: 1845 EVCPLNGCDYIVSNRMVVERRSQSEMLNS 1873
Score = 42 (19.8 bits), Expect = 5.0e-13, Sum P(4) = 5.0e-13
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 1274 NLYK--HLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKA 1312
N YK H +H + + SQI E +++ + D S K+
Sbjct: 1575 NRYKMVHKKHTNINIFSQIPEQDETYLEDSFCVDEDESYKS 1615
Score = 41 (19.5 bits), Expect = 5.0e-13, Sum P(4) = 5.0e-13
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 789 KSSGSREFFLKRETNSLWSPSY 810
+S+ +++FL E LW+ Y
Sbjct: 670 QSNSKKDWFLSAEEFKLWNRRY 691
Score = 39 (18.8 bits), Expect = 9.9e-13, Sum P(4) = 9.9e-13
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 1423 EVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQ 1460
E+C ++I K N + +D ++ ++ D P KR+
Sbjct: 1420 EICHRKIKKTKGNVLESPED-QKNSEVDSPLQAVKKRR 1456
Score = 39 (18.8 bits), Expect = 9.9e-13, Sum P(4) = 9.9e-13
Identities = 22/113 (19%), Positives = 50/113 (44%)
Query: 1220 LVDDC-ITRASLRSYVPRINEIKDIESKI----GYEFTVKF-LLQEAITHASVQEFYCYQ 1273
LVD C IT + + + I ++ ++ G ++ V ++ E + + +
Sbjct: 1820 LVDSCEITSGT--EVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEMLNSINKN 1877
Query: 1274 NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGA 1326
L +QH ++ +I V+ + +T D+ + K+ +LL +++GA
Sbjct: 1878 KLIDQIQHLQSMF-ERICVIVEKDKE--KTGDTSRMFRRTKSYDNLLTTLIGA 1927
Score = 38 (18.4 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 220 MDCE--GQISELEST-LDS--QVFTIEDKTEMEVFVPSAKESC--RFYDQSKFCGS 268
M+C+ + S LDS FT E + +F+P +E C + DQ C S
Sbjct: 923 MECQFTNESSSFAGNFLDSGYNSFTDEKYSSSSLFLPFEEELCIAKTDDQFYNCHS 978
>UNIPROTKB|J9P777 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 GO:GO:0005524
GO:GO:0003677 GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004518 GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
OMA:QMGMRSL Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530
EMBL:AAEX03005706 Ensembl:ENSCAFT00000046644 Uniprot:J9P777
Length = 2048
Score = 176 (67.0 bits), Expect = 5.8e-14, Sum P(3) = 5.8e-14
Identities = 52/167 (31%), Positives = 94/167 (56%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL++ + NT+ L TG GKT IA +++ + + S ++F+APT LV
Sbjct: 92 RDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK----VVFMAPTKPLV 147
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW-QKEINKND-VLVMTPQILLDAL-RKAF 163
QQ + + + + + A+ +Q + +KEI ++ VL +TPQ++++ L R A
Sbjct: 148 TQQIEAC--YRVMGIPQSHMAEMTGT--TQAFTRKEIWRSKRVLFLTPQVMVNDLSRGAC 203
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
+ +I C +VIDE H A GN+ Y ++++E + K N ++ ++A+P
Sbjct: 204 PAAEIKC-LVIDEAHKALGNYAYCQVVRELF-KYTNHFRILALSATP 248
Score = 119 (46.9 bits), Expect = 5.8e-14, Sum P(3) = 5.8e-14
Identities = 37/127 (29%), Positives = 62/127 (48%)
Query: 411 KSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLT-VAYLTGSTTSVDALTPKVQKEVLE 468
K + +IF R ++ E ++ P + +T V + +G S+ T K Q EV++
Sbjct: 473 KCDETRVMIFSSFRDSVQEIAEMLLQHQPVIRVMTFVGHASGK--SMKGFTQKEQLEVVK 530
Query: 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNSQFILMLE 527
FR G N L +T V EEG+ + +I FD K+ +Q GR R+ + +++L
Sbjct: 531 QFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGRKRKGRIVVILA 590
Query: 528 --RSERS 532
R ER+
Sbjct: 591 EGREERT 597
Score = 44 (20.5 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 1520 KSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVEC----NGDPR 1561
K R +++ EG E+RT S +K +++ GN + G PR
Sbjct: 582 KGRIVVILAEGREERTYNQSQSNKRSIYKAISGNRQVLHFYQGSPR 627
Score = 43 (20.2 bits), Expect = 5.8e-14, Sum P(3) = 5.8e-14
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 543 EACFLKACTYVKTKSYIVESTGASVTTDS 571
E C L C Y+ + +VE S +S
Sbjct: 1846 EVCPLNGCDYIVSNRMVVERRSQSEMLNS 1874
Score = 42 (19.8 bits), Expect = 5.0e-13, Sum P(4) = 5.0e-13
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 1274 NLYK--HLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKA 1312
N YK H +H + + SQI E +++ + D S K+
Sbjct: 1576 NRYKMVHKKHTNINIFSQIPEQDETYLEDSFCVDEDESYKS 1616
Score = 41 (19.5 bits), Expect = 5.0e-13, Sum P(4) = 5.0e-13
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 789 KSSGSREFFLKRETNSLWSPSY 810
+S+ +++FL E LW+ Y
Sbjct: 670 QSNSKKDWFLSAEEFKLWNRRY 691
Score = 39 (18.8 bits), Expect = 9.9e-13, Sum P(4) = 9.9e-13
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 1423 EVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQ 1460
E+C ++I K N + +D ++ ++ D P KR+
Sbjct: 1421 EICHRKIKKTKGNVLESPED-QKNSEVDSPLQAVKKRR 1457
Score = 39 (18.8 bits), Expect = 9.9e-13, Sum P(4) = 9.9e-13
Identities = 22/113 (19%), Positives = 50/113 (44%)
Query: 1220 LVDDC-ITRASLRSYVPRINEIKDIESKI----GYEFTVKF-LLQEAITHASVQEFYCYQ 1273
LVD C IT + + + I ++ ++ G ++ V ++ E + + +
Sbjct: 1821 LVDSCEITSGT--EVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEMLNSINKN 1878
Query: 1274 NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGA 1326
L +QH ++ +I V+ + +T D+ + K+ +LL +++GA
Sbjct: 1879 KLIDQIQHLQSMF-ERICVIVEKDKE--KTGDTSRMFRRTKSYDNLLTTLIGA 1928
Score = 38 (18.4 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 220 MDCE--GQISELEST-LDS--QVFTIEDKTEMEVFVPSAKESC--RFYDQSKFCGS 268
M+C+ + S LDS FT E + +F+P +E C + DQ C S
Sbjct: 923 MECQFTNESSSFAGNFLDSGYNSFTDEKYSSSSLFLPFEEELCIAKTDDQFYNCHS 978
>UNIPROTKB|G3MWK8 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271
Pfam:PF04851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 EMBL:DAAA02049179
EMBL:DAAA02049177 EMBL:DAAA02049178 Ensembl:ENSBTAT00000065634
Uniprot:G3MWK8
Length = 480
Score = 210 (79.0 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 114/484 (23%), Positives = 205/484 (42%)
Query: 47 RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
R YQ +V A + +N I L TG+GKT A + + + + +G K ++ L VHL
Sbjct: 4 RPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVARRHLETV--DGAK--VVVLVNRVHL 59
Query: 106 VHQQYDVIR--VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
V Q + + + + G G + ++D+L+ T ++L AL
Sbjct: 60 VTQHCEEFSRMLERRWTITTLSGDMG----PRAGFGHVARRHDLLICTAELLQKALASPE 115
Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH----KSDNKPKVFGMTASPVVRKG 215
+ + L+ +V+DECHH + Y I+ ++ ++ P+V G+TASP G
Sbjct: 116 EEEHVELNAFSLLVVDECHHTHKDTVYNIILSQYLELKLQRTRPLPQVLGLTASPGTG-G 174
Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275
VS+ + +L + LD+ + K + + C+ YD C +
Sbjct: 175 VSTLEGAIDHVLQLCANLDTWCI-MSPKDHSPQLQEHSHQPCKQYD---LCHRRTQ---- 226
Query: 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHA-KILYCLDELGL----ICAY 330
F L KL Q++ + +M + Q + ++ E GL + A
Sbjct: 227 ---DPFGDMLKKLM-DQIHDHLEMPKLRRDFGTQTYEQQVVELSQDAAEAGLLEQRVYAL 282
Query: 331 EAVK----ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY 386
+ + + ++A + R + + ++LH L L D D +
Sbjct: 283 HLRRYNDALLIHDTVRAVDALNTLRDFYNRERTTKTQILHAERWLLALFD----DHKNEL 338
Query: 387 SKAVDLGYISTKLHELLQLFLS--FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT 444
++ G + KL E+L+ L F IIF +A + ++++ P L +
Sbjct: 339 ARLATSGPENPKL-EVLEAILQRQFRSPDSPRGIIFTRTRQSAHSLLLWLQQQPGLQTVD 397
Query: 445 VA--YLTGS-----TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI 497
+ LTG+ T + +T + Q+EV++ FR G +NLL AT V EEG+ +P C+ V+
Sbjct: 398 IRPQVLTGAGNNSQKTQMIQMTQRDQQEVIQKFRTGTLNLLVATSVAEEGLDIPQCNVVV 457
Query: 498 RFDL 501
R+ L
Sbjct: 458 RYGL 461
>TAIR|locus:504955425 [details] [associations]
symbol:RTL1 "RNAse II-like 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0004525
"ribonuclease III activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] InterPro:IPR000999 Pfam:PF00636 PROSITE:PS50142
SMART:SM00535 EMBL:CP002687 GO:GO:0003723 GO:GO:0006396
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 IPI:IPI00537607
RefSeq:NP_680697.4 UniGene:At.45352 ProteinModelPortal:F4JK37
SMR:F4JK37 PRIDE:F4JK37 EnsemblPlants:AT4G15417.1 GeneID:827212
KEGG:ath:AT4G15417 OMA:HRFLRHK PhylomeDB:F4JK37 Uniprot:F4JK37
Length = 264
Score = 149 (57.5 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 1275 LYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLN 1334
LY +L+H LL QI E+V++ K S +K PK L D++ES +GA+ +D +
Sbjct: 116 LYSYLRHKKPLLEEQILEFVEAMEK--YPLHSNGLLKVPKVLADIVESTIGAIFMDCN-S 172
Query: 1335 LDEVWRIFKPILSPIVTPDK 1354
+ VW++ KP+L PI+ DK
Sbjct: 173 TETVWKVIKPLLEPIIHLDK 192
Score = 100 (40.3 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 1046 SLILEALTTLGCCE--SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1103
SL+L+A T + S S E LELLGDS+L + YPK+ G L+ R+ V
Sbjct: 44 SLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLYPKEAPGPLTKLRAVNVD 103
Query: 1104 NSTLHKLGTDRKLQGYIR 1121
L ++ + +L Y+R
Sbjct: 104 TEKLARVAVNHQLYSYLR 121
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 132 (51.5 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 61/204 (29%), Positives = 102/204 (50%)
Query: 60 RNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118
++ + V ETG+GKT V I + K G + L+I +PT L Q YD + V TD
Sbjct: 150 KDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVI--SPTRELASQIYDNLIVLTD 207
Query: 119 ---FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVID 175
+ YG GV + D Q + ++ K+ V+V TP LLD L++ + L V ++V+D
Sbjct: 208 KVGMQCCCVYG--GVPK-DEQ--RIQLKKSQVVVATPGRLLDLLQEGSVDLSQVNYLVLD 262
Query: 176 ECHHATGNHPYTKIMKEFYHKSD-NKPKVFGMTAS-PV-VRKGVSSAMDCEGQISELEST 232
E + + +K ++D +K + TA+ P VR+ S+ M+ ++S + +T
Sbjct: 263 EADRML-EKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVS-IGNT 320
Query: 233 LDSQVFTIEDKTEM-EVFVPSAKE 255
Q+ + T++ EV P KE
Sbjct: 321 --DQLTANKRITQIVEVVDPRGKE 342
Score = 129 (50.5 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 52/170 (30%), Positives = 78/170 (45%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA 457
KL ELL+ + S K + + I + + AA+V ER +K + VA + G
Sbjct: 344 KLLELLKKYHSGPKKNEKVLIFALYKKEAARV-ERNLKYNGY----NVAAIHGD------ 392
Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS---RGR 514
L+ + + + L F+ GK NLL ATDV G+ +PN VI P TV Y+ GR
Sbjct: 393 LSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR 452
Query: 515 ARQHNSQFILMLERSER------SVTDTALSRDPEACFLKACTYVKTKSY 558
A Q + L E+ + +V + A PE +K T+ K K +
Sbjct: 453 AGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPED-LIKFGTHTKKKEH 501
Score = 44 (20.5 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 844 FIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGS 887
F +++ L N G + P K G H K H A GS
Sbjct: 463 FTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTHTKKKEHSAYGS 506
>UNIPROTKB|F1SI11 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071821 "FANCM-MHF complex" evidence=IEA] [GO:0043240
"Fanconi anaemia nuclear complex" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0031297 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821
GO:GO:0043240 InterPro:IPR010994 SUPFAM:SSF47781 OMA:QMGMRSL
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:CU570961
Ensembl:ENSSSCT00000005515 Uniprot:F1SI11
Length = 2054
Score = 176 (67.0 bits), Expect = 1.0e-12, Sum P(4) = 1.0e-12
Identities = 53/167 (31%), Positives = 91/167 (54%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL + A NT+ L TG GKT IA +++ + + S ++F+APT LV
Sbjct: 101 RDYQLNIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK----VVFMAPTKPLV 156
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW-QKEI-NKNDVLVMTPQILLDAL-RKAF 163
QQ + + + + + A+ +Q + +KEI + VL +TPQ++++ L R A
Sbjct: 157 TQQIEAC--YRVMGIPQSHMAEMTGS--TQVFTRKEIWDSKRVLFLTPQVMVNDLSRGAC 212
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
+ +I C +VIDE H A GN+ Y ++++E K N ++ ++A+P
Sbjct: 213 PAAEIKC-LVIDEAHRALGNYAYCQVVRELV-KYTNHFRILALSATP 257
Score = 120 (47.3 bits), Expect = 1.0e-12, Sum P(4) = 1.0e-12
Identities = 33/109 (30%), Positives = 56/109 (51%)
Query: 428 KVVERFVKKVPFLTHLT-VAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEE 486
++ E ++ P + +T V + +G S+ T K Q EV++ FR G N L +T V EE
Sbjct: 500 EIAEMLLRHQPIIRVMTFVGHASGK--SMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEE 557
Query: 487 GMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNSQFILMLE--RSERS 532
G+ + +I FD K+ +Q GR R+ + +++L R ER+
Sbjct: 558 GLDIGEVDLIICFDAQKSPIRLVQRMGRTGRKRQGRIVVILAEGREERT 606
Score = 44 (20.5 bits), Expect = 2.8e-05, Sum P(4) = 2.8e-05
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 229 LESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQ 262
L ST D+ F+IE DK++ ++ + ++ S +Q
Sbjct: 1382 LNSTFDNSGFSIEKDKSKEQINLHQSRHSAEGDEQ 1416
Score = 42 (19.8 bits), Expect = 1.0e-12, Sum P(4) = 1.0e-12
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 543 EACFLKACTYVKTKSYIVESTGAS 566
E C L C Y+ + +VE S
Sbjct: 1852 EVCPLNGCDYIVSNRMVVERKSQS 1875
Score = 42 (19.8 bits), Expect = 1.0e-12, Sum P(4) = 1.0e-12
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 622 PTSRNKNL---SKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISK 667
P NKN+ S A E + QV LND ++E + I++
Sbjct: 868 PKKENKNVVIDSLDTNGNSATEDIFQVDLLNDKKASDIDEVAATGAINE 916
Score = 41 (19.5 bits), Expect = 1.3e-12, Sum P(4) = 1.3e-12
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 794 REFFLKRETNSLWSPSY 810
+++FL +E LWS Y
Sbjct: 685 KDWFLSKEEFQLWSRRY 701
Score = 41 (19.5 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 1520 KSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVEC----NGDPR 1561
+ R +++ EG E+RT S +K +++ GN + G PR
Sbjct: 591 QGRIVVILAEGREERTYNQSQSNKRSIYKAISGNKQVLHFYQGSPR 636
Score = 40 (19.1 bits), Expect = 6.8e-05, Sum P(4) = 6.8e-05
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG--SDLKGK 273
V ++D G S E QV + DK ++ +A + Y +K CG +D +
Sbjct: 876 VIDSLDTNGN-SATEDIF--QVDLLNDKKASDIDEVAATGAINEYVANKSCGLLTDCQF- 931
Query: 274 LEVSWSKFDASLSKLQGSQLNCYKD 298
+ S S F S S S N + D
Sbjct: 932 INKSTSSFTGSFSD---SGYNSFSD 953
Score = 37 (18.1 bits), Expect = 1.0e-12, Sum P(4) = 1.0e-12
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGA 1326
+T D+ ++ K+ LL +++GA
Sbjct: 1910 KTGDTSRMLRRTKSYDSLLTTLIGA 1934
>FB|FBgn0038889 [details] [associations]
symbol:CG7922 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0003677 GO:GO:0006200 GO:GO:0016887 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10896
GeneTree:ENSGT00640000091530 RefSeq:NP_650971.2
ProteinModelPortal:Q9VDA0 SMR:Q9VDA0 IntAct:Q9VDA0
MINT:MINT-4080825 EnsemblMetazoa:FBtr0084109 GeneID:42543
KEGG:dme:Dmel_CG7922 UCSC:CG7922-RA FlyBase:FBgn0038889
InParanoid:Q9VDA0 OMA:HRAKGRY OrthoDB:EOG451C5Q PhylomeDB:Q9VDA0
GenomeRNAi:42543 NextBio:829338 ArrayExpress:Q9VDA0 Bgee:Q9VDA0
Uniprot:Q9VDA0
Length = 1489
Score = 144 (55.7 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 69/243 (28%), Positives = 110/243 (45%)
Query: 29 DHAVDGPSSST--NSI--NFIP-RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDI 83
D A DG +T N I N +P R YQ + + A +NT+ VL TG GKT IA +++ +
Sbjct: 36 DEACDGFDMATGHNWIYPNNLPLRSYQQTIVQSALFKNTLVVLPTGLGKTFIAAVVMYNF 95
Query: 84 AQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGV--DEWDSQCWQKE 141
+ K I+F+APT LV QQ + F E+ G ++ W +
Sbjct: 96 YRWYP----KGKIVFMAPTRPLVSQQIHASQKIMPFPSEDTVQLTGQLPRPKRAELWASK 151
Query: 142 INKNDVLVMTPQI----LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197
V TPQ+ +L+A + + IV+DE H A G + YT++ +
Sbjct: 152 ----RVFFATPQVVHSDMLEADGECSFPFGSIKLIVVDEAHRAKGRYAYTQVA-DCLMAR 206
Query: 198 DNKPKVFGMTASPVVRKGVSSAMDCEG-QISELE----STLDSQVFTIEDKTEMEVFVPS 252
+ ++ ++A+P R A C IS L+ +++D Q + I +T + V S
Sbjct: 207 NRYFRMLALSATPG-RTMEDVAAVCRNLYISNLQVRWDTSIDVQPY-IHRRT-IRTIVVS 263
Query: 253 AKE 255
KE
Sbjct: 264 LKE 266
Score = 138 (53.6 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 56/218 (25%), Positives = 96/218 (44%)
Query: 391 DLGYISTKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFV-KKVPFLTHLTVAYL 448
DL + K +L Q+ + F + I+F E + ++ R + + P L
Sbjct: 408 DLDFGHAKYEKLRQVLVQHFQANPDSRAIVFCEYRESVMLIHRLLLQHRPVLRPRCFVG- 466
Query: 449 TGSTTSVD-ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT-VS 506
GST ALT K Q +++ FR G N+L AT + EEG+ V ++ FD+ T +
Sbjct: 467 QGSTVGASYALTQKQQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDICSTNPT 526
Query: 507 SYIQSRGRA-RQHNSQFILMLE--RSERSVTDTALSRDPEACFLKACTYVKTKSYIVEST 563
+IQ GR R+ N + ++++ R ++ + D ++D L + VK Y E
Sbjct: 527 RFIQRIGRTGRKKNGEVVMLVTEGREQQVLKDVLANKDQINKKLLNSSVVKLSLY--EQN 584
Query: 564 GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAE 601
V + ++ E + +K PKP K+ E
Sbjct: 585 PRMVPSKFQPKCEEKHMEPVAEEK---PKPKSAAKTKE 619
Score = 43 (20.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 40/146 (27%), Positives = 59/146 (40%)
Query: 551 TYVKTKSYI-VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELT 609
T V+ KS + ++ S+ D ++L + E P DK K KS E + ++
Sbjct: 1017 TKVEVKSSLNLKMHAESIVEDLDIDL-DDFLE--PMDKELELASQTKGKSQENIVDHQME 1073
Query: 610 -LPSNAPFQTIVGPTSRNKNLS------KQLV--CLEACEKLHQVGA--LNDHLLPSVEE 658
L N + T+ N +L K+ + +E E + Q A D L P
Sbjct: 1074 KLEKNCEQKE----TAHNNDLDLTDEDLKEFLEPMVEEVELMSQKKANDFKDFLEPM--- 1126
Query: 659 PSENNLIS--KKNESLPGAGTTKRKE 682
P E L+S KKN LP T K E
Sbjct: 1127 PEELELMSQQKKNILLPSTETIKNSE 1152
Score = 39 (18.8 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 1011 LYLLPSVMQRLESLMLASQLREEIN 1035
LYLL S + L L Q++ E+N
Sbjct: 735 LYLLKSNPEFLRETHLKMQVQSELN 759
Score = 39 (18.8 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 1396 VLLVGEGQERSRXXXXXXXXSQLLKKL-EVCEKRISKGASNTGKLGDDCRQTTKEDLPEP 1454
V+LV EG+E+ Q+ KKL ++S N + + +E EP
Sbjct: 544 VMLVTEGREQQVLKDVLANKDQINKKLLNSSVVKLSLYEQNPRMVPSKFQPKCEEKHMEP 603
Query: 1455 PSCKRQKGTEAA 1466
+ ++ K AA
Sbjct: 604 VAEEKPKPKSAA 615
>MGI|MGI:2442306 [details] [associations]
symbol:Fancm "Fanconi anemia, complementation group M"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=ISO] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=ISO] [GO:0071821 "FANCM-MHF complex" evidence=ISO]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 MGI:MGI:2442306
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 GO:GO:0003682
GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697 eggNOG:COG1948
HOGENOM:HOG000112498 HOVERGEN:HBG081520 KO:K10896 OMA:QMGMRSL
OrthoDB:EOG4C5CHK Gene3D:3.40.50.10130 EMBL:AK050306 EMBL:AK053715
EMBL:AK084697 EMBL:AK086395 EMBL:AK173211 IPI:IPI00471330
IPI:IPI00654953 IPI:IPI00654989 IPI:IPI00655127 RefSeq:NP_849243.2
UniGene:Mm.374847 ProteinModelPortal:Q8BGE5 SMR:Q8BGE5
STRING:Q8BGE5 PhosphoSite:Q8BGE5 PRIDE:Q8BGE5
Ensembl:ENSMUST00000058889 GeneID:104806 KEGG:mmu:104806
UCSC:uc007nrc.1 UCSC:uc007nrd.1 UCSC:uc007nrf.1 UCSC:uc011ymf.1
GeneTree:ENSGT00640000091530 InParanoid:Q8BGE5 NextBio:357300
Bgee:Q8BGE5 CleanEx:MM_FANCM Genevestigator:Q8BGE5
GermOnline:ENSMUSG00000055884 Uniprot:Q8BGE5
Length = 2021
Score = 164 (62.8 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 50/166 (30%), Positives = 86/166 (51%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL + A NT+ L TG GKT IA +++ + + S ++F+APT LV
Sbjct: 80 RDYQLDISRSALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK----VVFMAPTKPLV 135
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILL-DALRKAFL 164
QQ + H + + + A+ + +KEI + VL +TPQ+++ D R A
Sbjct: 136 TQQMEAC-FHV-MGIPQSHMAEMTGSTQAVN-RKEIWSSRRVLFLTPQVMVNDLTRGAVP 192
Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
+ + C +V+DE H A GN+ Y ++++E K ++ ++A+P
Sbjct: 193 ATHVKC-LVVDEAHKALGNYAYCQVVRELV-KYTTHFRILALSATP 236
Score = 116 (45.9 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 44/148 (29%), Positives = 71/148 (47%)
Query: 398 KLHE-LLQLFLSFGK--STQVLC-----IIFVE-RIIAAKVVERFVKKVPFLTHLT-VAY 447
KL E +L+ F S+ +T+ C +IF R ++ E ++ P + +T V +
Sbjct: 437 KLEEVILEHFKSWNAKATTEKKCHESRVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFVGH 496
Query: 448 LTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
+G T T K Q +V+ FR G N L +T V EEG+ + +I FD K+
Sbjct: 497 ASGKNTK--GFTQKEQLQVVRQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIR 554
Query: 508 YIQSRGRA-RQHNSQFILMLE--RSERS 532
IQ GR R+ + +++L R ER+
Sbjct: 555 LIQRMGRTGRKRQGRIVVILAEGREERT 582
Score = 44 (20.5 bits), Expect = 2.5e-11, Sum P(4) = 2.5e-11
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 984 TKKPQMHVHMPPELLVR--VDVPISVVKSLYLLPS 1016
TKKP+ +V PE VD PI VK +L S
Sbjct: 1390 TKKPKRNVLKSPEDQKNNEVDSPIHAVKKPRVLRS 1424
Score = 43 (20.2 bits), Expect = 3.3e-05, Sum P(3) = 3.3e-05
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 761 LDADQMSKAKCFQELFFNGLFGKLFVKSKSS 791
L A S K Q++ N L GK+ ++S+ S
Sbjct: 232 LSATPGSDIKAVQQVITNLLIGKIELRSEES 262
Score = 42 (19.8 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 543 EACFLKACTY-VKTKSYIVESTGASVTTDSSVNLIHRYCEMLPS 585
E C L C Y V ++ +V + + + +++S N + L S
Sbjct: 1807 EICPLNGCDYIVSSRMVVVRRSQSEMLSNTSKNKFIEQMQRLQS 1850
Score = 40 (19.1 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 213 RKGV-SSAMDCEGQISELESTLDSQVFTIEDKTEME-VFVPSA 253
R G+ +S + +G +SE E L S+++ + D +++ V +P +
Sbjct: 648 RGGIKASKSNKDGLLSEEEFNLWSRLYRLGDSDQVKGVALPQS 690
Score = 39 (18.8 bits), Expect = 5.0e-12, Sum P(3) = 5.0e-12
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 1520 KSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVEC----NGDPR 1561
+ R +++ EG E+RT S +K ++ GN + G PR
Sbjct: 567 QGRIVVILAEGREERTYNQSQSNKKNIYKAISGNRQVLRLYQGSPR 612
Score = 37 (18.1 bits), Expect = 2.5e-11, Sum P(4) = 2.5e-11
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 768 KAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSY 810
KA+ Q F+ G +K+ S +++ L E +LWS Y
Sbjct: 636 KARSVQRRPFSSRGG---IKASKS-NKDGLLSEEEFNLWSRLY 674
>UNIPROTKB|B2RTQ9 [details] [associations]
symbol:FANCM "FANCM protein" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781 UniGene:Hs.509229
HGNC:HGNC:23168 HOVERGEN:HBG081520 Gene3D:3.40.50.10130
EMBL:AL121809 EMBL:BC140776 EMBL:BC144511 IPI:IPI01014004
SMR:B2RTQ9 STRING:B2RTQ9 Ensembl:ENST00000542564 UCSC:uc010anf.3
Uniprot:B2RTQ9
Length = 2022
Score = 152 (58.6 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 48/149 (32%), Positives = 80/149 (53%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL + A NT+ L TG GKT IA +++ + + S ++F+APT LV
Sbjct: 92 RDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK----VVFMAPTKPLV 147
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEI--NKNDVLVMTPQILLDAL-RKAF 163
QQ + + + + + A+ + +KEI +K VL +TPQ++++ L R A
Sbjct: 148 TQQIEAC--YQVMGIPQSHMAEMTGSTQAST-RKEIWCSKR-VLFLTPQVMVNDLSRGAC 203
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKE 192
+ +I C +VIDE H A GN+ Y + +++
Sbjct: 204 PAAEIKC-LVIDEAHKALGNYAYCQAVQQ 231
Score = 118 (46.6 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 37/126 (29%), Positives = 60/126 (47%)
Query: 411 KSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLT-VAYLTGSTTSVDALTPKVQKEVLE 468
K + +IF R ++ E + P + +T V + +G +T T K Q EV++
Sbjct: 447 KRDETRVMIFSSFRDSVQEIAEMLSQHQPIIRVMTFVGHASGKSTK--GFTQKEQLEVVK 504
Query: 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNSQFILMLE 527
FR G N L +T V EEG+ + +I FD K+ +Q GR R+ + +++L
Sbjct: 505 QFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILS 564
Query: 528 --RSER 531
R ER
Sbjct: 565 EGREER 570
Score = 46 (21.3 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 34/187 (18%), Positives = 72/187 (38%)
Query: 500 DLPKTVSSYIQSRGRARQHNSQFILMLE--RSERSVTDTALSRDPEACFLKACT--YVKT 555
+L + + Y+ S N Q +L+ E ++ + A ++K+ +
Sbjct: 1491 ELSEEDAEYVSSDENDESENEQDSSLLDFLNDETQLSQAINDSEMRAIYMKSLRSPMMNN 1550
Query: 556 KSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKP-IFKYKSAEEAYECELTLPSNA 614
K ++ T ++ S I E D + + K +S+EE + L ++
Sbjct: 1551 KYKMIHKTHKNINIFSQ---IPEQDETYLEDSFCVDEEESCKGQSSEEEVCVDFNLITDD 1607
Query: 615 PFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPG 674
F +R + K+++ + C H L+ +LP ENN+ K+ ++
Sbjct: 1608 CFANSKKYKTRRAVMLKEMM-EQNCA--HSKKKLSRIILPDDSSEEENNVNDKRESNIAV 1664
Query: 675 AGTTKRK 681
+T +K
Sbjct: 1665 NPSTVKK 1671
Score = 45 (20.9 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 543 EACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEML 583
E C L C Y+ + +VE S +S VN +++ E +
Sbjct: 1820 EVCPLNGCDYIVSNRMVVERRSQSEMLNS-VNK-NKFIEQI 1858
Score = 40 (19.1 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 789 KSSGSREFFLKRETNSLWSPSY 810
+SS +++FL E LW+ Y
Sbjct: 645 QSSLKKDWFLSEEEFKLWNRLY 666
Score = 39 (18.8 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 598 KSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQ 632
K ++ C ++PS + Q+ V T R L+KQ
Sbjct: 1670 KKNKQQDHCLNSVPSGSSAQSKVRSTPRVNPLAKQ 1704
>ASPGD|ASPL0000062874 [details] [associations]
symbol:AN10063 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR003903 SMART:SM00726 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 HOGENOM:HOG000076770
EnsemblFungi:CADANIAT00002426 OMA:YNTIVAT Uniprot:C8VUA7
Length = 971
Score = 159 (61.0 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 56/208 (26%), Positives = 90/208 (43%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQ + + N + L TG GKT IA ++ + + KS IIF+APT LV
Sbjct: 161 RDYQFNITQKGLFYNLLVALPTGLGKTFIAATIMLNWLRWTKS----AQIIFVAPTKPLV 216
Query: 107 HQQYDV-IRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
QQ +R+ + E +E V MTPQ L + L+
Sbjct: 217 AQQISACLRIAG---IPRSQTTMLTGEAPPGIRAEEWKSKRVFFMTPQTLTNDLKSGIAD 273
Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP--VVR--KGVSSAMD 221
+ +V+DE H ATG + Y +++K F + + +V +TA+P V + V +D
Sbjct: 274 PKRIVLLVVDEAHRATGGYAYVEVVK-FLRRFNQSFRVLALTATPGSTVESVQAVIDGLD 332
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVF 249
E +LD + + T+++ F
Sbjct: 333 IARVEIRTEHSLDIREYVHARNTDIQTF 360
Score = 107 (42.7 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 44/185 (23%), Positives = 80/185 (43%)
Query: 413 TQVLCIIFVERIIAAKVVERFVKKV-PFLT-HLTVAYLTGSTTSVDALTPKVQKEVLESF 470
T +IFV +A+ V R +K+ P + H+ V S + + K Q ++++ F
Sbjct: 530 TATRVMIFVHFRDSAEEVTRVLKRYEPMIRPHVFVGQ--SSAKGSEGMGQKTQLDIIQKF 587
Query: 471 RGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNSQFILMLERS 529
+ G N + AT + EEG+ + ++ +D + +Q GR R+ +L+L +
Sbjct: 588 KKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQG 647
Query: 530 ERSVTDTALSRDPEACFLKAC-TYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKY 588
+ E +LKA Y K + I + + D S +I R + +P DK
Sbjct: 648 KE-----------EENYLKAKDNYEKMQQLIASGSQFTFHDDRSPRIIPRGIKPVP-DKR 695
Query: 589 YTPKP 593
+ P
Sbjct: 696 HVDIP 700
Score = 38 (18.4 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 22 DMGSSGHDHAVDGPSSSTNSINFIP 46
++ SSG D PS S N I+ IP
Sbjct: 48 NLKSSG-DAPAFAPSDSVNLIDDIP 71
>UNIPROTKB|J9NY43 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 GO:GO:0005524
GO:GO:0003677 GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004518 GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:AAEX03005706
Ensembl:ENSCAFT00000048988 Uniprot:J9NY43
Length = 2022
Score = 151 (58.2 bits), Expect = 2.2e-11, Sum P(3) = 2.2e-11
Identities = 47/149 (31%), Positives = 83/149 (55%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL++ + NT+ L TG GKT IA +++ + + S ++F+APT LV
Sbjct: 92 RDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK----VVFMAPTKPLV 147
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW-QKEINKND-VLVMTPQILLDAL-RKAF 163
QQ + + + + + A+ +Q + +KEI ++ VL +TPQ++++ L R A
Sbjct: 148 TQQIEAC--YRVMGIPQSHMAEMTGT--TQAFTRKEIWRSKRVLFLTPQVMVNDLSRGAC 203
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKE 192
+ +I C +VIDE H A GN+ Y + +++
Sbjct: 204 PAAEIKC-LVIDEAHKALGNYAYCQAIQQ 231
Score = 119 (46.9 bits), Expect = 2.2e-11, Sum P(3) = 2.2e-11
Identities = 37/127 (29%), Positives = 62/127 (48%)
Query: 411 KSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLT-VAYLTGSTTSVDALTPKVQKEVLE 468
K + +IF R ++ E ++ P + +T V + +G S+ T K Q EV++
Sbjct: 447 KCDETRVMIFSSFRDSVQEIAEMLLQHQPVIRVMTFVGHASGK--SMKGFTQKEQLEVVK 504
Query: 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNSQFILMLE 527
FR G N L +T V EEG+ + +I FD K+ +Q GR R+ + +++L
Sbjct: 505 QFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGRKRKGRIVVILA 564
Query: 528 --RSERS 532
R ER+
Sbjct: 565 EGREERT 571
Score = 44 (20.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 1520 KSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVEC----NGDPR 1561
K R +++ EG E+RT S +K +++ GN + G PR
Sbjct: 556 KGRIVVILAEGREERTYNQSQSNKRSIYKAISGNRQVLHFYQGSPR 601
Score = 43 (20.2 bits), Expect = 2.2e-11, Sum P(3) = 2.2e-11
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 543 EACFLKACTYVKTKSYIVESTGASVTTDS 571
E C L C Y+ + +VE S +S
Sbjct: 1820 EVCPLNGCDYIVSNRMVVERRSQSEMLNS 1848
Score = 42 (19.8 bits), Expect = 1.7e-10, Sum P(4) = 1.7e-10
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 1274 NLYK--HLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKA 1312
N YK H +H + + SQI E +++ + D S K+
Sbjct: 1550 NRYKMVHKKHTNINIFSQIPEQDETYLEDSFCVDEDESYKS 1590
Score = 41 (19.5 bits), Expect = 1.7e-10, Sum P(4) = 1.7e-10
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 789 KSSGSREFFLKRETNSLWSPSY 810
+S+ +++FL E LW+ Y
Sbjct: 644 QSNSKKDWFLSAEEFKLWNRRY 665
Score = 39 (18.8 bits), Expect = 3.3e-10, Sum P(4) = 3.3e-10
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 1423 EVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQ 1460
E+C ++I K N + +D ++ ++ D P KR+
Sbjct: 1395 EICHRKIKKTKGNVLESPED-QKNSEVDSPLQAVKKRR 1431
Score = 39 (18.8 bits), Expect = 3.3e-10, Sum P(4) = 3.3e-10
Identities = 22/113 (19%), Positives = 50/113 (44%)
Query: 1220 LVDDC-ITRASLRSYVPRINEIKDIESKI----GYEFTVKF-LLQEAITHASVQEFYCYQ 1273
LVD C IT + + + I ++ ++ G ++ V ++ E + + +
Sbjct: 1795 LVDSCEITSGT--EVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEMLNSINKN 1852
Query: 1274 NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGA 1326
L +QH ++ +I V+ + +T D+ + K+ +LL +++GA
Sbjct: 1853 KLIDQIQHLQSMF-ERICVIVEKDKE--KTGDTSRMFRRTKSYDNLLTTLIGA 1902
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 126 (49.4 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 59/218 (27%), Positives = 105/218 (48%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTM-----IAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
I Q + + + ++ +A +TG GKT I ++++ ++ +KSN ++ L PT
Sbjct: 27 IQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSETLKSN---TRVLILTPT 83
Query: 103 VHLVHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
L Q + + ++ +F V YG GV + ++Q QK D++V TP LL+ L
Sbjct: 84 RELAAQVAENVEAYSKYLNFSVLTIYG--GV-KVETQA-QKLKRGADIIVATPGRLLEHL 139
Query: 160 RKAFLSLDIVCFIVIDECHHATG---NHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGV 216
LSL V F+V+DE + KI++ K N +F T S V+K +
Sbjct: 140 TACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL--LFSATFSSAVKK-L 196
Query: 217 SSAMDCEGQISELE---STLD--SQV-FTIEDKTEMEV 248
++ M + Q+ + +T D SQV + +E + + E+
Sbjct: 197 ANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKREL 234
Score = 112 (44.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS---RGRARQHN 519
++ L F GKV +L AT+V G+ +P+ YV+ FDLP Y+ GRA +
Sbjct: 283 RRRALREFVSGKVRVLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSG 342
Query: 520 SQFILMLERSERSVTD 535
+ ER++ D
Sbjct: 343 VAISFVSREEERTLAD 358
>ZFIN|ZDB-GENE-090929-1 [details] [associations]
symbol:fancm "Fanconi anemia, complementation group
M" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR006166 InterPro:IPR011545 InterPro:IPR020819
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SMART:SM00891 ZFIN:ZDB-GENE-090929-1 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697
HOVERGEN:HBG081520 KO:K10896 Gene3D:3.40.50.10130 EMBL:EF088195
IPI:IPI00882629 RefSeq:NP_001107132.1 UniGene:Dr.154581
ProteinModelPortal:A8QLH8 GeneID:100006685 KEGG:dre:100006685
NextBio:20787226 Uniprot:A8QLH8
Length = 1761
Score = 213 (80.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 126/521 (24%), Positives = 220/521 (42%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL+V E A +NT+ L TG GKT IA +L+ + + + I+F+APT LV
Sbjct: 78 REYQLRVCEAALLQNTLVCLPTGLGKTFIASVLMYNYYRWFPAGK----IVFMAPTKPLV 133
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
QQ +E Y G+ + + E+ + + L + R FL+
Sbjct: 134 AQQ-----------IEACYRVMGIPQEHTA----ELTGSTAAPQR-RSLWSSRRVFFLTP 177
Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-----VVRKGVSSAMD 221
C +VIDE H ATGNH Y ++++E K + +V ++A+P V++ +S+ +
Sbjct: 178 PDRC-VVIDEAHKATGNHAYCQVIREL-RKQTPQFRVLALSATPGGDVKAVQQVISNLLI 235
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYD----------QSKFCGSDLK 271
EL S V T + +E V ES Y S+ L
Sbjct: 236 SH---IELRSEDSPDVQTHVHQRSLEKMVVPLGESLTHYQTRYLQVLERFSSRLTQMRLL 292
Query: 272 GKLEV-SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKI-LYCLDELGLICA 329
+ ++ ++SK+ L++ Q + + + + + D+ I LY EL L
Sbjct: 293 NQRDLRAFSKYQIILAREQFRRNPPPHIQGPQQQGVLE--GDFALLISLYHGFELLLQMG 350
Query: 330 YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKA 389
++ + ++ + E R +C F++ + + + A + L+ + Y+
Sbjct: 351 IRSLFLFIQNIFTGPRESSRVRNELQRCSLFMD-LYREMENMFNTASR-GLEEPYVYTHP 408
Query: 390 VDLGYISTKLHEL-LQLFLSFGKSTQVLCI-----IFVE-RIIAAKVVERFVKKVPFLTH 442
KL E+ L+ F + +S+ V + IF R ++ E + P +
Sbjct: 409 K-----LQKLDEVVLRHFQTCAESSDVSAVDTRVMIFSSYRESVQEIAEMLNRHQPLVRV 463
Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
+T + V T K Q EV+ FR G N L +T V EEG+ + ++ FD
Sbjct: 464 MTFMGQASAGRGVRGFTQKEQLEVVWRFREGGFNTLVSTCVGEEGLDIGEVDLIVCFDAQ 523
Query: 503 KTVSSYIQSRGRA-RQHNSQFILMLE--RSERSVTDTALSR 540
K+ +Q GR RQ + +++L R ER+ + +R
Sbjct: 524 KSPIRLVQRMGRTGRQRQGRIVVILAEGREERTYNQSQSNR 564
Score = 38 (18.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 1422 LEVCEKRISKGASNTGKLGDDCRQ 1445
L+VC KR + ++ GDD Q
Sbjct: 1265 LQVCRKRTATLNTSEDSDGDDVLQ 1288
Score = 38 (18.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 1518 ESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGN 1553
+ + R +++ EG E+RT S ++ +++ GN
Sbjct: 539 QRQGRIVVILAEGREERTYNQSQSNRRSINKSIMGN 574
>UNIPROTKB|I3LAY7 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006259 "DNA
metabolic process" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:CU570961
Ensembl:ENSSSCT00000030082 Uniprot:I3LAY7
Length = 2028
Score = 155 (59.6 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
Identities = 48/149 (32%), Positives = 81/149 (54%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL + A NT+ L TG GKT IA +++ + + S ++F+APT LV
Sbjct: 101 RDYQLNIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK----VVFMAPTKPLV 156
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW-QKEI-NKNDVLVMTPQILLDAL-RKAF 163
QQ + + + + + A+ +Q + +KEI + VL +TPQ++++ L R A
Sbjct: 157 TQQIEAC--YRVMGIPQSHMAEMTGS--TQVFTRKEIWDSKRVLFLTPQVMVNDLSRGAC 212
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKE 192
+ +I C +VIDE H A GN+ Y + +++
Sbjct: 213 PAAEIKC-LVIDEAHRALGNYAYCQAVQQ 240
Score = 120 (47.3 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
Identities = 33/109 (30%), Positives = 56/109 (51%)
Query: 428 KVVERFVKKVPFLTHLT-VAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEE 486
++ E ++ P + +T V + +G S+ T K Q EV++ FR G N L +T V EE
Sbjct: 474 EIAEMLLRHQPIIRVMTFVGHASGK--SMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEE 531
Query: 487 GMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNSQFILMLE--RSERS 532
G+ + +I FD K+ +Q GR R+ + +++L R ER+
Sbjct: 532 GLDIGEVDLIICFDAQKSPIRLVQRMGRTGRKRQGRIVVILAEGREERT 580
Score = 42 (19.8 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 543 EACFLKACTYVKTKSYIVESTGAS 566
E C L C Y+ + +VE S
Sbjct: 1826 EVCPLNGCDYIVSNRMVVERKSQS 1849
Score = 42 (19.8 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 622 PTSRNKNL---SKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISK 667
P NKN+ S A E + QV LND ++E + I++
Sbjct: 842 PKKENKNVVIDSLDTNGNSATEDIFQVDLLNDKKASDIDEVAATGAINE 890
Score = 41 (19.5 bits), Expect = 1.7e-10, Sum P(4) = 1.7e-10
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 794 REFFLKRETNSLWSPSY 810
+++FL +E LWS Y
Sbjct: 659 KDWFLSKEEFQLWSRRY 675
Score = 41 (19.5 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 1520 KSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVEC----NGDPR 1561
+ R +++ EG E+RT S +K +++ GN + G PR
Sbjct: 565 QGRIVVILAEGREERTYNQSQSNKRSIYKAISGNKQVLHFYQGSPR 610
Score = 37 (18.1 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGA 1326
+T D+ ++ K+ LL +++GA
Sbjct: 1884 KTGDTSRMLRRTKSYDSLLTTLIGA 1908
>TAIR|locus:2153333 [details] [associations]
symbol:RTL3 "RNAse THREE-like protein 3" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0006396 GO:GO:0003725 GO:GO:0090305
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 EMBL:AB012240 HSSP:O67082
IPI:IPI00541445 RefSeq:NP_199328.1 UniGene:At.55380
ProteinModelPortal:Q9FKF0 SMR:Q9FKF0 PaxDb:Q9FKF0 PRIDE:Q9FKF0
EnsemblPlants:AT5G45150.1 GeneID:834551 KEGG:ath:AT5G45150
TAIR:At5g45150 HOGENOM:HOG000152519 InParanoid:Q9FKF0 OMA:PHVEPED
PhylomeDB:Q9FKF0 ProtClustDB:CLSN2916859 Genevestigator:Q9FKF0
Uniprot:Q9FKF0
Length = 957
Score = 169 (64.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 79/325 (24%), Positives = 125/325 (38%)
Query: 1274 NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKL 1333
NL+ L + L ++ + ++ K + G +KAPK L D LESI V ID
Sbjct: 84 NLHHFLLLQNPSLFKKVKNFAEAVRKEDDPVPYGGLVKAPKILADTLESIAATVFIDVNY 143
Query: 1334 NLDEVWRIFKPILSPIVTPDKXXXXXXXXXXXXCDSLGYFVKENCT-LKGEMVHAELRLQ 1392
++ +W IF+ +L PI TPD E+ + ++ ++ L+
Sbjct: 144 DVKRLWEIFRSLLEPIYTPDDLLLQPKLPFLTLFRLADKHGSESTSGIRKMTTSTKILLR 203
Query: 1393 LKDVLLVGEGQERSRXXXXXXXXSQLLKKLEVCEKRISKGASNTGKLGD-DCRQTTKEDL 1451
KD L V E + ++L V E ++ S + D D ED+
Sbjct: 204 NKDCLDVD--LEDVKGKSFEICSTELFSLSTVSENSLTDEMSQEEVVIDEDSPNVEPEDV 261
Query: 1452 PEP--PSCKRQKGTEAAIPAGDSCKK-AYCMTVGTPVVAP--INMKKGGPRTSLFQLCKT 1506
C +K I G S Y MT VV ++++ R L ++C
Sbjct: 262 KGKLFEICYTRK---LQIQTGSSGNPLTYEMTTKQMVVDKDSLHVEPVNGRGELIEICTK 318
Query: 1507 MLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEF-GNVECNGDPRADKK 1565
WP P F E K G + FV + + IP G GD ++ KK
Sbjct: 319 NKWPRPIFSVQEEK---------GPKNEP---KFVCSVKIEIPNIEGTFHMKGDIKSKKK 366
Query: 1566 SSFDSAALIMLHELERQ-GKIIISS 1589
+ +S A M+ LE ++IS+
Sbjct: 367 QAENSLAYHMIRALESSLVSLVISN 391
Score = 103 (41.3 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 1301 GETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPD 1353
G+ D +KAPK L +LL + GAV ID K N+ + IF+ +L PI T D
Sbjct: 520 GKEDDPYRVVKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLD 572
Score = 83 (34.3 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 25/100 (25%), Positives = 46/100 (46%)
Query: 1007 VVKSLYLLPSVMQRLESLMLASQLREEINCHSR--NFHIPSSLILEALTTLGCCESFSME 1064
V+ +L S+ ++ L+ +S++ + + N+ + +L+ L T F +
Sbjct: 388 VISNLQKPKSLDEKNNPLLFSSEMDSSVEAVEKILNYSFVNKTLLKELLTHNNSPLF--Q 445
Query: 1065 RLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1104
L +G+S L A + HL+LTYP LS R C+
Sbjct: 446 GLMFVGESALSLAFTKHLYLTYPMLEPKDLSVLRDANTCH 485
Score = 76 (31.8 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 1043 IPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1102
+ +L+ EA+T +S +RLE GDS+L+ A + ++ TYP +L R+ V
Sbjct: 16 VNKTLLKEAITQ----KSPLFDRLEFFGDSILEVAFTNYICHTYPNLKVKELRDLRTANV 71
Query: 1103 CNSTLHKLGTDRKLQGYI 1120
N ++ + L ++
Sbjct: 72 SNEKFARIAVNHNLHHFL 89
Score = 75 (31.5 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 29/120 (24%), Positives = 50/120 (41%)
Query: 1465 AAIPAGDSCKKAYCMTVGTPVV---APINMKKGGPRTSLFQLCKTMLWPMPTFETTESKS 1521
+++P Y MT VV +P +++ + LF++C WP P F E +
Sbjct: 805 SSLPTTSENPSTYEMTTKQMVVDKDSP-HVEPEDEKGKLFEICAKNKWPNPIFSVEEERG 863
Query: 1522 RTLLVFCEGLEKRTGFSSFVSKITLHIPEF-GNVECNGDPRADKKSSFDSAALIMLHELE 1580
+ + +K V + + IP G GD + KK + +S+A M+ LE
Sbjct: 864 Q------QNEQK------IVCSVKIEIPNIEGTFHIKGDAKPTKKEAENSSADHMIRALE 911
Score = 59 (25.8 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHAS 1265
+N ++ +E + Y F K LL+EAIT S
Sbjct: 1 MNSVEAVEKILNYSFVNKTLLKEAITQKS 29
Score = 51 (23.0 bits), Expect = 5.3e-07, Sum P(4) = 5.3e-07
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1238 NEIKDIESKIGYEFTVKFLLQEAITH 1263
+ ++ +E + Y F K LL+E +TH
Sbjct: 413 SSVEAVEKILNYSFVNKTLLKELLTH 438
>DICTYBASE|DDB_G0274841 [details] [associations]
symbol:fncM "ATP-dependent DNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274841 GO:GO:0005524
GO:GO:0003677 GO:GO:0006974 EMBL:AAFI02000012 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1111
KO:K10896 RefSeq:XP_644014.1 ProteinModelPortal:Q8T145
EnsemblProtists:DDB0217507 GeneID:8619444 KEGG:ddi:DDB_G0274841
InParanoid:Q8T145 Uniprot:Q8T145
Length = 1789
Score = 208 (78.3 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 121/531 (22%), Positives = 222/531 (41%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQ K + A NT+ L TG GKT IA +L+ + K ++FL T LV
Sbjct: 474 REYQFKFIQSAFLENTMICLPTGLGKTFIASILMLNYYHWFP----KSKLVFLVHTKSLV 529
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLS 165
QQ + H D + + + + S+ ++ + N V TPQIL + +
Sbjct: 530 SQQIEAF--HRDTGIPKSDSIQFTGDTTSKLKRQSLWNSKRVFFSTPQILANDIGSGNCD 587
Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-----VVRKGVSSAM 220
+C IVIDE H A GN+ Y +K K + +V +TA+P ++K +++ +
Sbjct: 588 PRSICCIVIDEAHRAQGNYDYCVAIKLIL-KVNRFFRVLALTATPGSNNAAIQKVINNLL 646
Query: 221 DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE----- 275
++ E + D + + KT++ S D F LK E
Sbjct: 647 ISNMELRS-EDSADIKPYIHSKKTDVLSIALSDDYKSIIKDYEFFIVDKLKVLFEFNILN 705
Query: 276 -------VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDEL-GLI 327
VS S + +Q S Y +K K LR ++ Y L ++ GL
Sbjct: 706 PTTTPDRVSHSFILEKIKSIQFSNSPVYGSGGNKFKLLRALVTLQTLYQGYALLKVHGLE 765
Query: 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFL--DFGFD 385
Y+ + LE + + + + ++ K F+ ++ I + L + DK+ D +
Sbjct: 766 SFYDKISN-LEDA--SSKTIKAFSKNE-NWKQFIIKIKKSIDNGL-VHDKLIKLNDVLIE 820
Query: 386 YSKAVDLGYISTKLHELLQLFLSFGKSTQ-VLCIIFVERIIAAKVVERFVKKVPFLTHLT 444
+ ++ + S+K+ +F+ F +S Q ++ I + +K +PF
Sbjct: 821 HFQSNNPR--SSKV----MIFVQFRRSVQEIIDFISNNNNGGGGGGKSLIKVMPFYGQ-- 872
Query: 445 VAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
+ + V + K Q+ +L SF G +N+L +T + EEG+ + V+ +D+ ++
Sbjct: 873 ----SATDKGVKGIHKKEQQAILNSFVNGDINVLVSTCIGEEGLDIGEVDLVVCYDVQQS 928
Query: 505 VSSYIQSRGRA-RQHNSQFILMLERS-ERSVTDTALSRDPEACFLKACTYV 553
Q GR R+ + + I ++ + E + + + S LK ++V
Sbjct: 929 SLKNTQRTGRTGRKRDGRCIFLITQGYEEYIYEKSQSNLDSLSNLKESSFV 979
Score = 38 (18.4 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 648 LNDHLLPSVEEPSENNLISKKNESLPGAGTTKRK 681
L+D + +E +EN+L S+ KRK
Sbjct: 1612 LHDSFINDGDESAENSLSSQSTTPTKKKKKNKRK 1645
Score = 37 (18.1 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 911 EIVNNSSAESPFDGNTDDD 929
+IV +E P D N +D+
Sbjct: 1123 DIVKKVVSEMPLDNNDNDN 1141
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 122 (48.0 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
++LE F+ GK+ ++ ATDV G+H+ S+VI +DLP+ Y+ GR + ++
Sbjct: 287 KILEDFKSGKLPIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAE 343
Score = 110 (43.8 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 43/117 (36%), Positives = 60/117 (51%)
Query: 67 ETGAGKTMIAVMLIKDIAQAIKSN--GFKK--LIIFLAPTVHLVHQ-QYD--VIRVHTDF 119
+TG GKT A LI + ++S G ++ I LAPT LV Q + D V+ H F
Sbjct: 46 QTGTGKT--AAFLISLFTKLLRSGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGF 103
Query: 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDE 176
++ YG GVD + KE DV+V TP L+D L++ SL + +VIDE
Sbjct: 104 TIQAIYG--GVDYMKQKNALKE--GADVVVGTPGRLIDYLKQKVYSLKEIEMLVIDE 156
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 120 (47.3 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 36/117 (30%), Positives = 58/117 (49%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA 457
KL +LL+ + + +S+ +IF A +E F+K+ F +VA + G
Sbjct: 385 KLIQLLRKY-NANESSDNKILIFALYKKEASRIENFLKRNRF----SVAAIHGD------ 433
Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
L+ + + L +F+ G+ NLL ATDV G+ +PN VI P T+ Y+ GR
Sbjct: 434 LSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGR 490
Score = 109 (43.4 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 41/122 (33%), Positives = 64/122 (52%)
Query: 60 RNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKL-IIFLAPTVHLVHQQYD-VIRVH 116
++ I V ETG+GKT V I +I I + K L ++ ++PT L Q YD +I +
Sbjct: 191 KDVIGVAETGSGKTFAFGVPAINNI---ITTGNTKTLSVLCISPTRELALQIYDNLIELT 247
Query: 117 TDFEVE--EYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVI 174
D V YG GV + D Q ++I +V+V TP L+D + ++L V ++V+
Sbjct: 248 ADSGVNCVAVYG--GVSK-DDQI--RKIKTANVVVATPGRLVDLINDGAINLGKVNYLVL 302
Query: 175 DE 176
DE
Sbjct: 303 DE 304
Score = 49 (22.3 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 844 FIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGS 887
F +++ L A CN G + P K G H K H G+
Sbjct: 504 FTEDEKHLSGALCNILRGANQPVPEELLKFGGHTKKKAHSVYGA 547
>UNIPROTKB|F1NE03 [details] [associations]
symbol:Gga.50035 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=IEA] [GO:0071821 "FANCM-MHF complex" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
InterPro:IPR010994 SUPFAM:SSF47781 OMA:QMGMRSL Gene3D:3.40.50.10130
GeneTree:ENSGT00640000091530 EMBL:AADN02004087 EMBL:AADN02004088
IPI:IPI00590518 Ensembl:ENSGALT00000020359 ArrayExpress:F1NE03
Uniprot:F1NE03
Length = 1836
Score = 126 (49.4 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 38/117 (32%), Positives = 59/117 (50%)
Query: 427 AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEE 486
A+++ RF V +T V + TG +T T K Q EV++ FR G N L +T V EE
Sbjct: 327 AEMLSRFSPVVRVMTF--VGHSTGKSTK--GFTQKEQLEVVKRFREGGYNTLVSTCVGEE 382
Query: 487 GMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNSQFILMLE--RSERSVTDTALSR 540
G+ + +I FD K+ +Q GR RQ + +++L R ER+ + +R
Sbjct: 383 GLDIGEVDLIICFDAQKSPIRLVQRMGRTGRQRQGRVVVILAEGREERTYNQSQSNR 439
Score = 117 (46.2 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 32/115 (27%), Positives = 66/115 (57%)
Query: 147 VLVMTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFG 205
V +TPQI+++ L + ++++ C +V+DE H A GNH Y +++KE + + +V
Sbjct: 17 VFFLTPQIMVNDLSRGTCPAVEVKC-LVVDEAHKALGNHAYCQVVKEL-SRYTTQFRVLA 74
Query: 206 MTASP-----VVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE 255
+TA+P V++ VS+ + + ++ E + + Q ++ E + E ++ VP +E
Sbjct: 75 LTATPGSDTKAVQQVVSNLLIAQIELCS-EDSPEIQPYSHERQVE-KIVVPLGEE 127
Score = 46 (21.3 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 655 SVEEPSENNLISKKNESLPGAG----TTKRKELHG 685
S EE N NES G G T +RK+LHG
Sbjct: 1423 SEEEEVCVNFDLLNNESFGGGGGRYLTRRRKKLHG 1457
Score = 38 (18.4 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 648 LNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTP 688
+ND + PSV+ L S + + P AG ++ G +P
Sbjct: 963 VNDEM-PSVDVEPLLRLGSGGHTARPSAGPASQQPPSGDSP 1002
Score = 38 (18.4 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 27/109 (24%), Positives = 41/109 (37%)
Query: 589 YTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGAL 648
++P P+ K + EE E TL P P ++ S QL + L A+
Sbjct: 820 HSPPPVSKLEGIEELLRHEETL---CPL-----PKVSCRSYSGQLPHGDFPSSL----AV 867
Query: 649 NDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWG 697
+ LLP+ + N K S P A + G +L G+ G
Sbjct: 868 DQSLLPAESLSAAVNTCVSKPASTPTAAGGAEERPPGGGSFHSLLGKEG 916
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 121 (47.7 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 30/90 (33%), Positives = 42/90 (46%)
Query: 461 KVQKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS---RGR 514
K Q+E VL F+ GK ++ ATDV G+ + N YVI FD P + Y+ GR
Sbjct: 394 KKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGR 453
Query: 515 ARQHNSQFILMLERSERSVTDTA-LSRDPE 543
A H + F + R D + R+ E
Sbjct: 454 AGSHGASFTFLTADKYRLAKDLVKILRESE 483
Score = 103 (41.3 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 37/145 (25%), Positives = 71/145 (48%)
Query: 36 SSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVM--LIKDIAQAIKSNGF 92
S N+I P Q++ + +A ++ I ETG+GKT+ ++ + +AQ G
Sbjct: 127 SLKNNNI-VAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKYGD 185
Query: 93 KKLIIFLAPTVHLVHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMT 151
+++ LAPT L Q + + I+ T+ ++ GV + Q + + + +L+
Sbjct: 186 GPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPK-SGQIYALKQGVH-ILIAC 243
Query: 152 PQILLDALRKAFLSLDIVCFIVIDE 176
P L+D L + +L V ++V+DE
Sbjct: 244 PGRLIDLLEQNVTNLMRVTYLVLDE 268
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 121 (47.7 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 30/90 (33%), Positives = 42/90 (46%)
Query: 461 KVQKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS---RGR 514
K Q+E VL F+ GK ++ ATDV G+ + N YVI FD P + Y+ GR
Sbjct: 394 KKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGR 453
Query: 515 ARQHNSQFILMLERSERSVTDTA-LSRDPE 543
A H + F + R D + R+ E
Sbjct: 454 AGSHGASFTFLTADKYRLAKDLVKILRESE 483
Score = 103 (41.3 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 37/145 (25%), Positives = 71/145 (48%)
Query: 36 SSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVM--LIKDIAQAIKSNGF 92
S N+I P Q++ + +A ++ I ETG+GKT+ ++ + +AQ G
Sbjct: 127 SLKNNNI-VAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKYGD 185
Query: 93 KKLIIFLAPTVHLVHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMT 151
+++ LAPT L Q + + I+ T+ ++ GV + Q + + + +L+
Sbjct: 186 GPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPK-SGQIYALKQGVH-ILIAC 243
Query: 152 PQILLDALRKAFLSLDIVCFIVIDE 176
P L+D L + +L V ++V+DE
Sbjct: 244 PGRLIDLLEQNVTNLMRVTYLVLDE 268
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 129 (50.5 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 49/177 (27%), Positives = 83/177 (46%)
Query: 46 PRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVM-LIKDIA-QAIKSNGFKKLIIFLAPT 102
P Q + +A R+ IA+ +TG+GKT + I I Q G + +FLAPT
Sbjct: 328 PTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPIALFLAPT 387
Query: 103 VHLVHQQY-DVIRVHTDFEVEE--YYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDA 158
L HQ Y + ++ F+++ YG GV + QC KE+ +++V TP L+D
Sbjct: 388 RELAHQIYLETLKYSKYFKLKTTVLYG--GVSK-QQQC--KELKAGCEIIVATPGRLIDM 442
Query: 159 LRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRK 214
++ L+ V ++V+DE +++ H + D + +F T P V +
Sbjct: 443 IKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATFKPNVEE 499
Score = 100 (40.3 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 25/97 (25%), Positives = 47/97 (48%)
Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
+IFV +A + + + K F T L G ++ + + +++F+ GK+N+
Sbjct: 554 LIFVSTKVAVEQLSSNLTKFGFQT----CTLHGDKNQIE------RSQTIQTFKEGKINI 603
Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
L ATDV G+ +P V+ +D + + S+ GR
Sbjct: 604 LIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGR 640
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 115 (45.5 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 446 AYLTGSTTSVDALTPKV-QKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501
++L G V LT V QK+ +LE F G++++L ATDV G+H+ + S+V +DL
Sbjct: 274 SWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDL 333
Query: 502 PKTVSSYIQSRGR 514
P Y+ GR
Sbjct: 334 PDDCEDYVHRIGR 346
Score = 102 (41.0 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 54/230 (23%), Positives = 104/230 (45%)
Query: 40 NSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTM---IAV---MLIKDIAQAIKSNGFK 93
N F I L + + + ++ +TG GKTM +A +L I + + N +
Sbjct: 27 NGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSSSIPEGRQLNQPR 86
Query: 94 KLIIFLAPTVHLVHQ-QYDVIRV--HTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLV 149
+I +APT L Q D I + HT +V YG + +D Q +K +++ D+L+
Sbjct: 87 AII--MAPTRELAIQIAKDAILLAKHTRLKVGIVYGG---ESYDVQ--RKVLDQGVDILI 139
Query: 150 MTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209
T ++D +R+ ++L+ + +V+DE + + K ++ + + N + M S
Sbjct: 140 GTTGRIIDYVRQGIINLNAIQAVVLDEADRMF-DLGFIKDIRFLFRRMPNADQRLNMLFS 198
Query: 210 PVVRKGVSS-AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCR 258
+ V A D ++E + + T ++ E E+F PS ++ R
Sbjct: 199 ATLSMKVQELAYDHMNDPVKVEIAPEEK--TSKNIKE-EIFYPSQEDKMR 245
Score = 48 (22.0 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 20/77 (25%), Positives = 30/77 (38%)
Query: 620 VGPTSR--NKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGT 677
+G T R NK +S C E L + +H +P V + L+ + +P
Sbjct: 344 IGRTGRAGNKGVSVSFACEEYALNLPAIETYINHSIP-VSNYDRDALL----DDIPSPVK 398
Query: 678 TKRKELHGTTPIRALSG 694
RK G +R SG
Sbjct: 399 IHRKHPAGARNLRERSG 415
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 115 (45.5 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 446 AYLTGSTTSVDALTPKV-QKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501
++L G V LT V QK+ +LE F G++++L ATDV G+H+ + S+V +DL
Sbjct: 274 SWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDL 333
Query: 502 PKTVSSYIQSRGR 514
P Y+ GR
Sbjct: 334 PDDCEDYVHRIGR 346
Score = 102 (41.0 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 54/230 (23%), Positives = 104/230 (45%)
Query: 40 NSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTM---IAV---MLIKDIAQAIKSNGFK 93
N F I L + + + ++ +TG GKTM +A +L I + + N +
Sbjct: 27 NGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSSSIPEGRQLNQPR 86
Query: 94 KLIIFLAPTVHLVHQ-QYDVIRV--HTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLV 149
+I +APT L Q D I + HT +V YG + +D Q +K +++ D+L+
Sbjct: 87 AII--MAPTRELAIQIAKDAILLAKHTRLKVGIVYGG---ESYDVQ--RKVLDQGVDILI 139
Query: 150 MTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209
T ++D +R+ ++L+ + +V+DE + + K ++ + + N + M S
Sbjct: 140 GTTGRIIDYVRQGIINLNAIQAVVLDEADRMF-DLGFIKDIRFLFRRMPNADQRLNMLFS 198
Query: 210 PVVRKGVSS-AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCR 258
+ V A D ++E + + T ++ E E+F PS ++ R
Sbjct: 199 ATLSMKVQELAYDHMNDPVKVEIAPEEK--TSKNIKE-EIFYPSQEDKMR 245
Score = 48 (22.0 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 20/77 (25%), Positives = 30/77 (38%)
Query: 620 VGPTSR--NKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGT 677
+G T R NK +S C E L + +H +P V + L+ + +P
Sbjct: 344 IGRTGRAGNKGVSVSFACEEYALNLPAIETYINHSIP-VSNYDRDALL----DDIPSPVK 398
Query: 678 TKRKELHGTTPIRALSG 694
RK G +R SG
Sbjct: 399 IHRKHPAGARNLRERSG 415
>UNIPROTKB|F6QFS2 [details] [associations]
symbol:F6QFS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GeneTree:ENSGT00640000091530
EMBL:DAAA02052960 EMBL:DAAA02052959 IPI:IPI00843333
Ensembl:ENSBTAT00000043352 OMA:SHERQLE Uniprot:F6QFS2
Length = 373
Score = 167 (63.8 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 67/218 (30%), Positives = 110/218 (50%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL + A NT+ L TG GKT IA +++ + + S ++F+APT LV
Sbjct: 98 RDYQLHIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK----VVFMAPTKPLV 153
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW-QKEI-NKNDVLVMTPQILLDAL-RKAF 163
QQ + + + + + A+ +Q + +KEI + VL +TPQ++++ L R A
Sbjct: 154 TQQIEAC--YRVMGIPQSHMAEMTGS--TQAFTRKEIWSSKRVLFLTPQVMVNDLSRGAC 209
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKI--MKEFYHKSDNKPKVFGMTASPVVR-KGVSSAM 220
+ +I C +VIDE H A GN+ Y ++ +K FY S N ++ + PV K V +
Sbjct: 210 PAAEIKC-LVIDEAHKALGNYAYCQVILLKIFY--SQNF-RLLNLRIPPVSSIKAVQQVI 265
Query: 221 D--CEGQIS-ELESTLDSQVFTIEDKTEMEVFVPSAKE 255
GQI E + D ++ E + E ++ VP +E
Sbjct: 266 TNLLIGQIELRSEDSPDILPYSHERRVE-KLVVPLGEE 302
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 119 (46.9 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 453 TSVDALTPKVQKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
T++ + ++EV L SF+ G+ +L ATDV G+ +P+ ++V+ FDLP + Y+
Sbjct: 433 TTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 492
Query: 512 RGRA-RQHNS 520
GR R NS
Sbjct: 493 IGRTGRAGNS 502
Score = 105 (42.0 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 42/132 (31%), Positives = 65/132 (49%)
Query: 56 VAKRRNTIAVLETGAGKTM-----IAVMLIKD--IAQAIKSNGFKKLIIFLAPTVHLVHQ 108
+A R+ +A +TG+GKT I ++KD I + G L + L+PT L Q
Sbjct: 180 LAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQ 239
Query: 109 QYDVIR---VHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFL 164
+D R T +V YG V++ Q +E+ + D+LV TP L D L + +
Sbjct: 240 IHDEARKFSYQTGVKVVVAYGGTPVNQ---QI--RELERGVDILVATPGRLNDLLERGRV 294
Query: 165 SLDIVCFIVIDE 176
SL +V F+ +DE
Sbjct: 295 SLQMVRFLALDE 306
>ZFIN|ZDB-GENE-061013-64 [details] [associations]
symbol:ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
28" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-061013-64 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:BC124668 IPI:IPI00805270 RefSeq:NP_001070800.1
UniGene:Dr.84136 ProteinModelPortal:Q08BL1 GeneID:768189
KEGG:dre:768189 InParanoid:Q08BL1 NextBio:20918504
ArrayExpress:Q08BL1 Uniprot:Q08BL1
Length = 558
Score = 124 (48.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 44/141 (31%), Positives = 71/141 (50%)
Query: 43 NFI-PRIYQLKVF-EVAKRRNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFKKL-IIF 98
N I P QL+ ++ K RN + ETG+GKT+ ++ +I + + + + + + +
Sbjct: 170 NIIHPTTVQLQTIPKILKGRNILCAAETGSGKTLTYLLPIIHRLQEDLLAGSERSIRAVV 229
Query: 99 LAPTVHLVHQQYDVIR-VHTDFE--VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL 155
+ P+ L Q V R V F V+ G +GV + + + D+LV TP L
Sbjct: 230 IVPSRELAEQVNSVARSVSERFGLVVKVVGGGRGVGTIKAAFAR---GQPDILVSTPGAL 286
Query: 156 LDALRKAFLSLDIVCFIVIDE 176
L AL K F+SL + F+VIDE
Sbjct: 287 LKALWKRFISLSELYFLVIDE 307
Score = 97 (39.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 39/142 (27%), Positives = 61/142 (42%)
Query: 387 SKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII----AAKVVERFVKKVPFLTH 442
SKA DL IST +L + K T L + ++I+ A K E+ K V +
Sbjct: 361 SKATDLASISTVKSRMLHHLMPHIKQT-FLRVKGADKILELHQALKRAEQEQKGVLVFCN 419
Query: 443 L--TVAYLTGSTTSVDALTPKVQKE--------VLESFRGGKVNLLFATDVIEEGMHVPN 492
TV +L S + ++Q E V F+ GK N+L TD+ G+
Sbjct: 420 SASTVNWLGYSLEEMGVGHMRLQGEMPAAMREGVFRDFQRGKTNVLVCTDIASRGLDTQR 479
Query: 493 CSYVIRFDLPKTVSSYIQSRGR 514
++ +D P++ + YI GR
Sbjct: 480 VGLIVNYDFPESQTDYIHRAGR 501
>UNIPROTKB|H0YJZ6 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR000999 Pfam:PF00636
PROSITE:PS50142 SMART:SM00535 GO:GO:0003723 GO:GO:0006396
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 HGNC:HGNC:17098 ChiTaRS:DICER1
Ensembl:ENST00000532939 Uniprot:H0YJZ6
Length = 394
Score = 131 (51.2 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 1074 LKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPR-RWVA 1132
LK+A++ +LF TYP HEG+LS RS V N L++LG + L + S FDP W+
Sbjct: 2 LKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLP 61
Query: 1133 PG 1134
PG
Sbjct: 62 PG 63
Score = 67 (28.6 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1178 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1212
+ K+IADC EAL+G Y G AA + LG+
Sbjct: 233 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGL 267
Score = 59 (25.8 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHAS 1265
I+ ++ E KI Y F K L +A THAS
Sbjct: 342 ISGFENFEKKINYRFKNKAYLLQAFTHAS 370
Score = 46 (21.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 1277 KHLQHCSTLLLSQITEYVKSFP-KPGETTDSGPSMKAPK--ALGDL 1319
+H++ +L+ +VK P TTDS K PK +LG +
Sbjct: 127 EHIRFIDNMLMGS-GAFVKKISLSPFSTTDSAYEWKMPKKSSLGSM 171
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 117 (46.2 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 42/144 (29%), Positives = 75/144 (52%)
Query: 40 NSINFI----PRIYQLKVFEVA-KRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFK 93
N+IN I P Q++V + K R +A+ TG+GKT ++ +++ + + K GF+
Sbjct: 212 NNINEIGYKEPSPIQMQVIPILLKEREVVAIAPTGSGKTASFSIPILQALYEP-KKEGFR 270
Query: 94 KLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTP 152
+II APT L Q Y R+ + + + + +Q + + KN D+L+ TP
Sbjct: 271 SVII--APTRELAQQIYRNFRLLS--KGKPFRICVLSKNLHNQSTNENLIKNYDILITTP 326
Query: 153 QILLDALRKAFLSLDIVCFIVIDE 176
L+ +++ LSL+ V ++V DE
Sbjct: 327 LRLVYLIKENLLSLNKVEYLVFDE 350
Score = 102 (41.0 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+++ FR GK+ +L T+++ GM ++VI FD P T++SYI GR
Sbjct: 482 IVKKFRMGKIWVLICTELMARGMDFKGVNFVINFDFPHTLASYIHRIGR 530
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 119 (46.9 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 453 TSVDALTPKVQKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
TS+ + ++EV L++F+ G+ +L ATDV G+ +P+ ++V+ FDLP + Y+
Sbjct: 446 TSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 505
Query: 512 RGR 514
GR
Sbjct: 506 IGR 508
Score = 99 (39.9 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 37/128 (28%), Positives = 64/128 (50%)
Query: 60 RNTIAVLETGAGKTM-----IAVMLIKD--IAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112
R+ +A +TG+GKT I ++KD + + S L + L+PT L Q +D
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDE 256
Query: 113 IR---VHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDI 168
+ T +V YG +++ Q +E+ + D+LV TP L D L +A +S+ +
Sbjct: 257 AKKFSYQTGVKVVVAYGGTPINQ---QL--RELERGVDILVATPGRLNDLLERARVSMQM 311
Query: 169 VCFIVIDE 176
+ F+ +DE
Sbjct: 312 IRFLALDE 319
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 115 (45.5 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 460 PKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
P+ ++E V++SFR K+ L ATDV G+ V ++V +D+P+ V SYI GR
Sbjct: 279 PQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGR 334
Score = 103 (41.3 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 72/294 (24%), Positives = 124/294 (42%)
Query: 40 NSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFL 99
N I I + + + ++ I +TG GKT+ V+ I + +S+ + LI+
Sbjct: 23 NGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDP-ESSDVQALIV-- 79
Query: 100 APTVHLVHQQYDVIRV----HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL 155
APT L Q I+ D V YG + V +Q +K ++V TP L
Sbjct: 80 APTRELALQITTEIKKMLVQREDINVLAIYGGQDV----AQQLRKLKGNTHIVVATPGRL 135
Query: 156 LDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKP-----KVFGMTASP 210
LD +R+ + L + IV+DE Y + + D P +F T
Sbjct: 136 LDHIRRETIDLSNLSTIVLDEADQML----YFGFLYDIEDILDETPGSKQTMLFSATIPK 191
Query: 211 VVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY-DQSKFCGSD 269
++K MD E Q+ +++S + V TIE + +E + ++ RF D+ + +
Sbjct: 192 DIKKLAKRYMD-EPQMIQVQSE-EVTVDTIEQRV-IETTDRAKPDALRFVMDRDQPFLAV 248
Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQL--SDYHAKILYCL 321
+ + +V SK L+G NC + D + R+++ S AKI Y +
Sbjct: 249 IFCRTKVRASKL---YDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Score = 40 (19.1 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 1277 KHLQHCSTLLLSQITEYVKSFPKPGETTDSG-PSMK-APKALGD 1318
KHL+ L + I + PK ++G P K APK G+
Sbjct: 354 KHLEEIEKTLGAPIQREIIEQPKIKRVDENGKPLPKPAPKKSGE 397
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 115 (45.5 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 460 PKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
P+ ++E V++SFR K+ L ATDV G+ V ++V +D+P+ V SYI GR
Sbjct: 279 PQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGR 334
Score = 103 (41.3 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 72/294 (24%), Positives = 124/294 (42%)
Query: 40 NSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFL 99
N I I + + + ++ I +TG GKT+ V+ I + +S+ + LI+
Sbjct: 23 NGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDP-ESSDVQALIV-- 79
Query: 100 APTVHLVHQQYDVIRV----HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL 155
APT L Q I+ D V YG + V +Q +K ++V TP L
Sbjct: 80 APTRELALQITTEIKKMLVQREDINVLAIYGGQDV----AQQLRKLKGNTHIVVATPGRL 135
Query: 156 LDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKP-----KVFGMTASP 210
LD +R+ + L + IV+DE Y + + D P +F T
Sbjct: 136 LDHIRRETIDLSNLSTIVLDEADQML----YFGFLYDIEDILDETPGSKQTMLFSATIPK 191
Query: 211 VVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFY-DQSKFCGSD 269
++K MD E Q+ +++S + V TIE + +E + ++ RF D+ + +
Sbjct: 192 DIKKLAKRYMD-EPQMIQVQSE-EVTVDTIEQRV-IETTDRAKPDALRFVMDRDQPFLAV 248
Query: 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQL--SDYHAKILYCL 321
+ + +V SK L+G NC + D + R+++ S AKI Y +
Sbjct: 249 IFCRTKVRASKL---YDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Score = 40 (19.1 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 1277 KHLQHCSTLLLSQITEYVKSFPKPGETTDSG-PSMK-APKALGD 1318
KHL+ L + I + PK ++G P K APK G+
Sbjct: 354 KHLEEIEKTLGAPIQREIIEQPKIKRVDENGKPLPKPAPKKSGE 397
>RGD|1309381 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001525 "angiogenesis" evidence=ISO] [GO:0001932 "regulation of
protein phosphorylation" evidence=ISO] [GO:0001942 "hair follicle
development" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004525 "ribonuclease III activity" evidence=ISO]
[GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment"
evidence=IDA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0006915 "apoptotic process" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0009791 "post-embryonic development"
evidence=ISO] [GO:0010070 "zygote asymmetric cell division"
evidence=ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISO] [GO:0010628 "positive regulation of
gene expression" evidence=ISO] [GO:0014040 "positive regulation of
Schwann cell differentiation" evidence=ISO] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0019827 "stem
cell maintenance" evidence=ISO] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=ISO] [GO:0021675 "nerve
development" evidence=ISO] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=ISO] [GO:0021987 "cerebral cortex
development" evidence=ISO] [GO:0030324 "lung development"
evidence=ISO] [GO:0030326 "embryonic limb morphogenesis"
evidence=ISO] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=IDA] [GO:0030425 "dendrite" evidence=IDA]
[GO:0030426 "growth cone" evidence=IDA] [GO:0031054 "pre-miRNA
processing" evidence=ISO] [GO:0031069 "hair follicle morphogenesis"
evidence=ISO] [GO:0031641 "regulation of myelination" evidence=ISO]
[GO:0031643 "positive regulation of myelination" evidence=ISO]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISO] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0035198 "miRNA binding"
evidence=ISO] [GO:0035264 "multicellular organism growth"
evidence=ISO] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=ISO] [GO:0042981 "regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0045069 "regulation of
viral genome replication" evidence=ISO] [GO:0045595 "regulation of
cell differentiation" evidence=ISO] [GO:0045664 "regulation of
neuron differentiation" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048536 "spleen development" evidence=ISO]
[GO:0048565 "digestive tract development" evidence=ISO] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=ISO]
[GO:0048730 "epidermis morphogenesis" evidence=ISO] [GO:0048754
"branching morphogenesis of an epithelial tube" evidence=ISO]
[GO:0048812 "neuron projection morphogenesis" evidence=ISO]
[GO:0050767 "regulation of neurogenesis" evidence=ISO] [GO:0051225
"spindle assembly" evidence=ISO] [GO:0051607 "defense response to
virus" evidence=ISO] [GO:0051726 "regulation of cell cycle"
evidence=ISO] [GO:0055013 "cardiac muscle cell development"
evidence=ISO] [GO:0060119 "inner ear receptor cell development"
evidence=ISO] [GO:0060253 "negative regulation of glial cell
proliferation" evidence=ISO] [GO:0060576 "intestinal epithelial
cell development" evidence=ISO] [GO:0070173 "regulation of enamel
mineralization" evidence=ISO] [GO:0071335 "hair follicle cell
proliferation" evidence=ISO] [GO:2000630 "positive regulation of
miRNA metabolic process" evidence=ISO] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1309381 GO:GO:0030424 GO:GO:0030425 Gene3D:3.30.160.20
GO:GO:0030426 GO:GO:0003725 GO:GO:0005793 GO:GO:0010626
eggNOG:COG1111 GO:GO:0004525 GO:GO:0035196 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
GO:GO:0031643 GO:GO:0014040 HOVERGEN:HBG092134 IPI:IPI00365891
EMBL:BC098796 UniGene:Rn.205881 STRING:Q4G034 PhosphoSite:Q4G034
UCSC:RGD:1309381 InParanoid:Q4G034 Genevestigator:Q4G034
Uniprot:Q4G034
Length = 401
Score = 113 (44.8 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 1302 ETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1350
E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P++ P++
Sbjct: 273 EDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLI 321
Score = 80 (33.2 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 1064 ERLELLGDSVLKYAVSCHLFLTYPKKHE-GQLSARRSWAVCNSTL 1107
+RLE LGD++L Y ++ HL+ P++H G L+ RS A+ N+T+
Sbjct: 181 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRS-ALVNNTI 223
Score = 75 (31.5 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 1237 INEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQ-ITEYVK 1295
I+ ++ E KI Y F K L +A THAS + + Y+ L+ +L IT+++
Sbjct: 142 ISGFENFEKKINYIFKNKAYLLQAFTHASYH-YNTITDCYQRLEFLGDAILDYLITKHLY 200
Query: 1296 SFPK---PGETTD 1305
P+ PG TD
Sbjct: 201 EDPRQHSPGVLTD 213
Score = 67 (28.6 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1178 MGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGI 1212
+ K+IADC EAL+G Y G AA + LG+
Sbjct: 35 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGL 69
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 109 (43.4 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 58/210 (27%), Positives = 93/210 (44%)
Query: 314 HAKILYCLDELGLICAYEAVKIC----LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIG 369
H ++L+ DEL ++ EA ++ ++ + K E +RQ+ L EEV G
Sbjct: 144 HQRVLH-FDELDMLVLDEADRMLDMGFIDDINKIIERLPEHRQNLLFSATMSEEVR---G 199
Query: 370 SALPLADK-IFLDFGFDY-SKAVDLGYISTKLHELLQLFLSFGKSTQ--VLCIIFVE-RI 424
A K + + G D SK ++ T LS +TQ +IF+E +
Sbjct: 200 LAKRTIHKPVEISIGADKASKPKIEQWLVTVDKANKSALLSHIITTQNWQQALIFIETKH 259
Query: 425 IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVI 484
AAK+V + K+ VA S + D +++++L F+ GK+ L AT +
Sbjct: 260 GAAKLVSQLEKRG------IVAESIHSGRAQD-----IREKILNDFKSGKIKFLVATAIA 308
Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
G+ + S VI +DLP V YI GR
Sbjct: 309 ARGLDIGELSRVINYDLPAQVDDYIHRIGR 338
Score = 100 (40.3 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 45/141 (31%), Positives = 62/141 (43%)
Query: 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFK---KLI--IF 98
P Q K V ++ IA +TG GKT V+ L++ + K G K K I +
Sbjct: 24 PTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNSQYKETGKKLRAKRIRALI 83
Query: 99 LAPTVHLVHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL 155
L PT L Q I + D YG GVD + + Q+ I D+LV TP L
Sbjct: 84 LVPTRELAVQVEASISQYAKYLDISSMAMYG--GVDAQEQK--QRLIWGVDILVATPGRL 139
Query: 156 LDALRKAFLSLDIVCFIVIDE 176
LD + L D + +V+DE
Sbjct: 140 LDMTHQRVLHFDELDMLVLDE 160
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 119 (46.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 453 TSVDALTPKVQKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
TS+ + ++EV L SF+ G+ +L ATDV G+ +P+ ++V+ FDLP + Y+
Sbjct: 436 TSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 495
Query: 512 RGR 514
GR
Sbjct: 496 IGR 498
Score = 94 (38.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 35/128 (27%), Positives = 61/128 (47%)
Query: 60 RNTIAVLETGAGKTM-----IAVMLIKD--IAQAIKSNGFKKLIIFLAPTVHL---VHQQ 109
R+ +A +TG+GKT I ++KD + + S + L+PT L +H +
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 110 YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDI 168
T +V YG + + Q +E+ + D+LV TP L D L +A +S+ +
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQ---QL--RELERGCDILVATPGRLNDLLERARVSMQM 303
Query: 169 VCFIVIDE 176
+ F+ +DE
Sbjct: 304 IRFLALDE 311
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 129 (50.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
++ + + + ++SF+ GK LL ATDV G+ +P+ S+VI FD+P+ SYI GR +
Sbjct: 273 MSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGR 332
Query: 518 --HNSQFILMLERSERSV 533
+ I ++ ER +
Sbjct: 333 AGREGKAITLINYRERKL 350
Score = 79 (32.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 36/146 (24%), Positives = 68/146 (46%)
Query: 38 STNSINF-IPRIYQLKVFE-VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL 95
+ N + F +P Q + + + N + TG GKT A L+ + Q I+ G K
Sbjct: 16 AVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKT--AAYLLP-VLQRIQ-RGKKAQ 71
Query: 96 IIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN----DVLVMT 151
++ + PT L Q D + ++ +Y + + + Q +++I +V+V T
Sbjct: 72 VLIVTPTRELALQVADEVA-----KLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGT 126
Query: 152 PQILLDAL-RKAFLSLDIVCFIVIDE 176
P +LD + RK F + +I +++DE
Sbjct: 127 PGRILDHIGRKTFPAAEIK-IVILDE 151
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 129 (50.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
++ + + + ++SF+ GK LL ATDV G+ +P+ S+VI FD+P+ SYI GR +
Sbjct: 273 MSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGR 332
Query: 518 --HNSQFILMLERSERSV 533
+ I ++ ER +
Sbjct: 333 AGREGKAITLINYRERKL 350
Score = 79 (32.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 36/146 (24%), Positives = 68/146 (46%)
Query: 38 STNSINF-IPRIYQLKVFE-VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL 95
+ N + F +P Q + + + N + TG GKT A L+ + Q I+ G K
Sbjct: 16 AVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKT--AAYLLP-VLQRIQ-RGKKAQ 71
Query: 96 IIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN----DVLVMT 151
++ + PT L Q D + ++ +Y + + + Q +++I +V+V T
Sbjct: 72 VLIVTPTRELALQVADEVA-----KLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGT 126
Query: 152 PQILLDAL-RKAFLSLDIVCFIVIDE 176
P +LD + RK F + +I +++DE
Sbjct: 127 PGRILDHIGRKTFPAAEIK-IVILDE 151
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 117 (46.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 30/100 (30%), Positives = 52/100 (52%)
Query: 436 KVPFLTH-LTVAYLTGSTTSVDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNC 493
KV FLT+ L + T S D P+ +++ +++ FR G +L +TD++ G+ V
Sbjct: 274 KVEFLTNKLREQHFTVSAIHADL--PQAERDTIMKEFRSGSSRILISTDLLARGIDVQQV 331
Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSERSV 533
S VI +DLP +YI GR + + + + ++R V
Sbjct: 332 SLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDV 371
Score = 90 (36.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 33/132 (25%), Positives = 59/132 (44%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q + + + R+ +A ++G GKT A I + Q I N + LAPT L
Sbjct: 49 IQQRAILPITEGRDVLAQAQSGTGKT--ATFTISAL-QRINENEKATQALILAPTRELAL 105
Query: 108 QQYDVIR---VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
Q +VI ++ V G + + D + ++ + ++V TP +LD + + +
Sbjct: 106 QIKNVITAIGLYLKVTVHASIGGTSMSD-DIEAFRSGVQ---IVVGTPGRVLDMIERRYF 161
Query: 165 SLDIVCFIVIDE 176
D V ++DE
Sbjct: 162 KTDKVKMFILDE 173
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 117 (46.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 30/100 (30%), Positives = 52/100 (52%)
Query: 436 KVPFLTH-LTVAYLTGSTTSVDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNC 493
KV FLT+ L + T S D P+ +++ +++ FR G +L +TD++ G+ V
Sbjct: 274 KVEFLTNKLREQHFTVSAIHADL--PQAERDTIMKEFRSGSSRILISTDLLARGIDVQQV 331
Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSERSV 533
S VI +DLP +YI GR + + + + ++R V
Sbjct: 332 SLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDV 371
Score = 90 (36.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 33/132 (25%), Positives = 59/132 (44%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q + + + R+ +A ++G GKT A I + Q I N + LAPT L
Sbjct: 49 IQQRAILPITEGRDVLAQAQSGTGKT--ATFTISAL-QRINENEKATQALILAPTRELAL 105
Query: 108 QQYDVIR---VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
Q +VI ++ V G + + D + ++ + ++V TP +LD + + +
Sbjct: 106 QIKNVITAIGLYLKVTVHASIGGTSMSD-DIEAFRSGVQ---IVVGTPGRVLDMIERRYF 161
Query: 165 SLDIVCFIVIDE 176
D V ++DE
Sbjct: 162 KTDKVKMFILDE 173
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 125 (49.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 43/146 (29%), Positives = 68/146 (46%)
Query: 377 KIFLDF-GFDYSKAVDLGYISTKLHELLQLFLS---FGKSTQVLCIIFVERIIAAKVVER 432
++ DF DY V +G + ++ Q FL F K Q+L ++ R I ++
Sbjct: 383 RLAADFLKVDYL-FVAVGVVGGACTDVEQTFLQVTKFNKREQLLDLL---RTIGSERTMV 438
Query: 433 FVKKVPFLTHLTVAYLTGS---TTSVDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGM 488
FV+ A+L TTS+ + ++E L FR GK +L AT V G+
Sbjct: 439 FVE-TKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGKCPVLVATSVASRGL 497
Query: 489 HVPNCSYVIRFDLPKTVSSYIQSRGR 514
+P+ +V+ FDLP T+ Y+ GR
Sbjct: 498 DIPDVQHVVNFDLPNTIDDYVHRIGR 523
Score = 87 (35.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 37/131 (28%), Positives = 64/131 (48%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVMLIKD--IAQAIKSNGFKKL----IIFLAPTVHLVHQQ 109
++ R+ +A +TG+GKT ++ I +A + ++ F ++ + +APT L++Q
Sbjct: 215 ISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQI 274
Query: 110 YDVIRVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLS 165
Y R T YG GV+ + +EI K +VL TP LLD + + +
Sbjct: 275 YQEARKFSFGTCVRPVVVYG--GVN---TGYQMREIEKGCNVLCGTPGRLLDMIGRGKVG 329
Query: 166 LDIVCFIVIDE 176
L V +V+DE
Sbjct: 330 LSKVRHLVLDE 340
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 116 (45.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 35/133 (26%), Positives = 58/133 (43%)
Query: 385 DYSKAVDLGYISTKLHELLQLFLS---FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT 441
DY V +G + ++ Q+ + FGK +++ I+ V + KK F+
Sbjct: 497 DYLFVV-VGQVGGACSDVEQMVIEVDEFGKKDKLMEILQEIGSERTMVFVKTKKKADFIA 555
Query: 442 HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501
ST+ K ++ L FR G+ ++ AT V G+ + N SYVI FD+
Sbjct: 556 TFLCQEKVPSTSIHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDI 615
Query: 502 PKTVSSYIQSRGR 514
P + Y+ GR
Sbjct: 616 PDDIDEYVHRIGR 628
Score = 98 (39.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 38/127 (29%), Positives = 66/127 (51%)
Query: 60 RNTIAVLETGAGKT--MIAVMLIKDIAQAIKSNGFKKL----IIFLAPTVHLVHQQY-DV 112
R+ +A +TG+GKT + +L + + ++S+ F+ L I +APT L++Q Y D
Sbjct: 324 RDLMACAQTGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDA 383
Query: 113 IRVH--TDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIV 169
+ T YG G + S K+I++ ++L TP LLD +RK + L +
Sbjct: 384 RKFSYGTCVRPVVIYG--GTQMFHSL---KQISEGCNILCATPGRLLDVIRKEKIGLTKL 438
Query: 170 CFIVIDE 176
++V+DE
Sbjct: 439 RYLVLDE 445
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 121 (47.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 39/122 (31%), Positives = 60/122 (49%)
Query: 399 LHELLQLFLSFGKSTQ---VLCIIFVERIIAAKVVE-RFVKKVPFLTH-LTVAYLTGSTT 453
L + Q F+S K LC I+ I V+ KKV LT + A T ++
Sbjct: 242 LDGIKQFFVSVEKEDWKFGTLCDIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASM 301
Query: 454 SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
D + K ++E+++SFR G+ +L TD++ G+ V S VI +DLP +YI G
Sbjct: 302 HGD-MVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIG 360
Query: 514 RA 515
R+
Sbjct: 361 RS 362
Score = 85 (35.0 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 33/132 (25%), Positives = 62/132 (46%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q + + K R+TIA ++G GKT A I + Q ++ N ++ L+PT L
Sbjct: 58 IQQRAILPIIKGRDTIAQAQSGTGKT--ATFSIGAL-QCVEVNVRSPQVLILSPTRELAQ 114
Query: 108 QQYDVIRVHTDF---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
Q V ++F +V G K + + D + + ++ ++ TP +LD + + L
Sbjct: 115 QIQKVALALSEFMNIQVHACVGGKNLSD-DVKKLETGVH---IVSGTPGRVLDMITRKSL 170
Query: 165 SLDIVCFIVIDE 176
+ +++DE
Sbjct: 171 PTRHIKMMILDE 182
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 118 (46.6 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 463 QKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
Q+E+ LE FR + N+L ATDV+ G+ +P+ ++VI +D+PK + Y GR
Sbjct: 614 QREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGR 666
Score = 93 (37.8 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 37/155 (23%), Positives = 71/155 (45%)
Query: 58 KRRNTIAVLETGAGKTMIAV--ML--IKDIAQAIKSNGFK-KLIIFLAPTVHLVHQ-QYD 111
++R+ I + ETG+GKT V ML I + + N + + +APT L Q + +
Sbjct: 349 QQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEE 408
Query: 112 VIRV--HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIV 169
++ + F V G + ++E + Q ++++ TP L+D L + + L+
Sbjct: 409 TVKFAHYLGFRVTSIVGGQSIEEQGLKITQG----CEIVIATPGRLIDCLERRYAVLNQC 464
Query: 170 CFIVIDECHHAT--GNHPYTKIMKEFYHKSDNKPK 202
++V+DE G P + + S+ KP+
Sbjct: 465 NYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPE 499
>TIGR_CMR|BA_2109 [details] [associations]
symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
ProteinModelPortal:Q81RE0 DNASU:1085806
EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
Length = 389
Score = 118 (46.6 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 454 SVDALTPKVQKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
++ A K ++E + +FRGGK+ +L ATD+ G+ + + ++VI +LP TV YI
Sbjct: 263 ALHAEASKQEREATMRAFRGGKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRS 322
Query: 513 GR 514
GR
Sbjct: 323 GR 324
Score = 85 (35.0 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 34/123 (27%), Positives = 62/123 (50%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114
+ + ++ IA TG GKT+ ++ L+ I +K + ++ LAPT LV Q ++ ++
Sbjct: 32 ILEGQDVIAESPTGTGKTLAYLLPLLHKINPEVK----QPQVVVLAPTRELVMQIHEEVQ 87
Query: 115 VHTDFEVEEYYGAKGVDEWDSQCWQKEINKND-VLVMTPQILLDALRKAFLSLDIVCFIV 173
T E GA + D + +++ K+ V+V +P +L+ +R L + V IV
Sbjct: 88 KFT--AGTEISGASLIGGADIKRQVEKLKKHPRVIVGSPGRILELIRMKKLKMHEVKTIV 145
Query: 174 IDE 176
DE
Sbjct: 146 FDE 148
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 110 (43.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 46/170 (27%), Positives = 77/170 (45%)
Query: 60 RNTIAVLETGAGKTM-IAVMLIKDIAQA-IKSNGFKKLIIFLAPTVHLVHQQYD-VIRV- 115
R+ I + ETG+GKT+ + +K + K + L + ++PT L Q YD +++
Sbjct: 111 RDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVVISPTRELAMQIYDQLVKFA 170
Query: 116 -HTDFEVEEYYGAKGVDEWDSQCWQKEINKND-VLVMTPQILLDALRKAFLSLDIVCFIV 173
D +V +G DE Q+E K+ V+V TP L D L L V ++V
Sbjct: 171 EKVDIQVACIFGGVKKDE------QREALKSAAVVVATPGRLKDLQNDGSLDLGRVKYLV 224
Query: 174 IDECHHATGNHPYTKIMKEFYHK---SDNKPKVFGMTASPVVRKGVSSAM 220
+DE + + + +K+ S + +F T P+VR S+ M
Sbjct: 225 LDEADRML-DKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLASTFM 273
Score = 96 (38.9 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
LE+F+ G +L ATDV G+ +P+ V+ P TV Y+ GR
Sbjct: 366 LEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGR 413
>TIGR_CMR|CBU_0305 [details] [associations]
symbol:CBU_0305 "ATP-dependent DNA helicase RecG"
species:227377 "Coxiella burnetii RSA 493" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006281 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006310 GO:GO:0004003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000036617 KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917
TIGRFAMs:TIGR00643 HSSP:Q9WY48 RefSeq:NP_819348.1
ProteinModelPortal:Q83EL4 PRIDE:Q83EL4 GeneID:1208187
KEGG:cbu:CBU_0305 PATRIC:17929305
BioCyc:CBUR227377:GJ7S-312-MONOMER Uniprot:Q83EL4
Length = 704
Score = 111 (44.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 42/148 (28%), Positives = 72/148 (48%)
Query: 410 GKSTQVLCIIFVE-RIIAAKVVERFVKKVP-FLTHLTVAYLTGSTTSVDALTPKVQKEV- 466
GK +C + + ++ + E KK+ T+L+V + G T K +K+V
Sbjct: 494 GKQVYWVCTLITDSEVLQCETAEATFKKLQQSFTNLSVGLIHGRLT-------KEEKDVV 546
Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI-QSRGRAR--QHNSQFI 523
+ +F+ G ++LL AT VIE G+ VPN S ++ + + + I Q RGR + S +
Sbjct: 547 MGAFKNGDIDLLVATTVIEVGVDVPNASLMVIENSERLGLAQIHQLRGRVGRGEQKSYCV 606
Query: 524 LMLER--SERSVTDTALSRDPEACFLKA 549
L+ + S+ + L RD + FL A
Sbjct: 607 LLYQEPLSKNARARLTLLRDTQDGFLVA 634
Score = 99 (39.9 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 56/245 (22%), Positives = 109/245 (44%)
Query: 55 EVAKRRNTIAVLE--TGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112
+++K + + +L+ G+GKT++A M I +A++ NG++ I +APT L Q Y V
Sbjct: 296 DLSKPKPMLRLLQGDVGSGKTIVAAMAI---LKAVE-NGYQSAI--MAPTELLAEQHYQV 349
Query: 113 I-RVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCF 171
R + + + A + + +EI + V+ I AL +A ++ + F
Sbjct: 350 FQRWFSPLGIRVGWLAGSLTPSAREKTLQEIASGQLSVI---IGTHALFQAAVTFQQLAF 406
Query: 172 IVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRK-GVSSAMDCEGQISELE 230
IVIDE H G H + ++ + P MTA+P+ R +++ D + I + +
Sbjct: 407 IVIDE-QHRFGVHQRLALKEKA--TPNYHPHQLIMTATPIPRTLAMTAYADLDFSIIDEQ 463
Query: 231 STLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQ 289
+ T+ + + + K++C Q + + + + +A+ KLQ
Sbjct: 464 PPGRKPITTVLISNSRRDKVIERIKKNCEQGKQVYWVCTLITDSEVLQCETAEATFKKLQ 523
Query: 290 GSQLN 294
S N
Sbjct: 524 QSFTN 528
>UNIPROTKB|J9NU36 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00530000062880 EMBL:AAEX03006506
EMBL:AAEX03006505 Ensembl:ENSCAFT00000049437 Uniprot:J9NU36
Length = 423
Score = 106 (42.4 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 35/127 (27%), Positives = 59/127 (46%)
Query: 416 LCIIFVERIIAAKVVERFV---KKVPFLTHLTVAY-LTGSTTSVDALTPKVQKEVLESFR 471
LC ++ I V+ F+ +KV +LT A T S D + K + ++ FR
Sbjct: 280 LCDLYETLTITQAVI--FINTRRKVDWLTEKMHARDFTVSAMHGD-MDQKERDVIMREFR 336
Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI---LMLER 528
G +L TD++ G+ V S VI +DLP +YI GR + + + ++ E
Sbjct: 337 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 396
Query: 529 SERSVTD 535
+R++ D
Sbjct: 397 DKRTLRD 403
Score = 98 (39.6 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 36/166 (21%), Positives = 74/166 (44%)
Query: 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
IP Q + K + IA ++G GKT A+ +++ I +K+ + L+ LAPT
Sbjct: 72 IPPTRQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT--QALV--LAPTR 127
Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
L Q V+ D+ + G ++ + ++ ++V TP + D L + +
Sbjct: 128 ELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY 187
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209
LS + V+DE + + + + + K ++ +V ++A+
Sbjct: 188 LSPKYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSAT 232
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 127 (49.8 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 40/130 (30%), Positives = 63/130 (48%)
Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV---KKVPFL-THLTV 445
V +G + ++ Q L G+ ++ ++ + R I + FV KK F+ T L
Sbjct: 476 VAVGQVGGACRDVQQTILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQ 535
Query: 446 AYLTGSTTSVDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
+ STTS+ + ++E L FR GK +L AT V G+ + N +VI FDLP T
Sbjct: 536 EKI--STTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPST 593
Query: 505 VSSYIQSRGR 514
+ Y+ GR
Sbjct: 594 IDEYVHRIGR 603
Score = 82 (33.9 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 36/126 (28%), Positives = 60/126 (47%)
Query: 60 RNTIAVLETGAGKT--MIAVMLIKDIAQAIKSNGFKKL----IIFLAPTVHLVHQQYDVI 113
R+ +A +TG+GKT + +L + I ++ FK+L I +APT L++Q Y
Sbjct: 299 RDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEA 358
Query: 114 RVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
R T YG G S ++ + ++L TP L+D + K + L V
Sbjct: 359 RKFSFGTCVRAVVIYG--GTQFGHSV--RQIVQGCNILCATPGRLMDIIGKEKIGLKQVK 414
Query: 171 FIVIDE 176
++V+DE
Sbjct: 415 YLVLDE 420
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 107 (42.7 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
L+ +++VL+ F+ G V +L ATDV G+ + YVI F+LP YI GR +
Sbjct: 279 LSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGR 338
Query: 518 HNS 520
S
Sbjct: 339 AGS 341
Score = 96 (38.9 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 40/128 (31%), Positives = 61/128 (47%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI-KSNGFKKLI--IFLAPTVHL---VHQQ 109
+ +++ +A +TG GKT + I + A +S+ K I + L PT L V Q
Sbjct: 35 ILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALVLVPTRELALQVQQS 94
Query: 110 YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDI 168
+ TD V YG ++ +Q Q N DVL+ TP LLD LR+ L+L+
Sbjct: 95 FVKYAKGTDIRVGIAYGGVSIE---AQ--QAVFNAGIDVLIATPGRLLDHLRQGALNLNQ 149
Query: 169 VCFIVIDE 176
+ +V DE
Sbjct: 150 LNTLVFDE 157
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 107 (42.7 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517
L+ +++VL+ F+ G V +L ATDV G+ + YVI F+LP YI GR +
Sbjct: 279 LSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGR 338
Query: 518 HNS 520
S
Sbjct: 339 AGS 341
Score = 96 (38.9 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 40/128 (31%), Positives = 61/128 (47%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI-KSNGFKKLI--IFLAPTVHL---VHQQ 109
+ +++ +A +TG GKT + I + A +S+ K I + L PT L V Q
Sbjct: 35 ILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALVLVPTRELALQVQQS 94
Query: 110 YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDI 168
+ TD V YG ++ +Q Q N DVL+ TP LLD LR+ L+L+
Sbjct: 95 FVKYAKGTDIRVGIAYGGVSIE---AQ--QAVFNAGIDVLIATPGRLLDHLRQGALNLNQ 149
Query: 169 VCFIVIDE 176
+ +V DE
Sbjct: 150 LNTLVFDE 157
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 112 (44.5 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 463 QKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR---ARQH 518
Q+E L FR G N+L ATDV G+ VPN +I ++LP +++ GR A +
Sbjct: 386 QRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKK 445
Query: 519 NSQFILMLERSERSV 533
S ++ + R+V
Sbjct: 446 GSAILIYSQDQSRAV 460
Score = 95 (38.5 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 40/132 (30%), Positives = 58/132 (43%)
Query: 50 QLKVFEVAKR-RNTIAVLETGAGKTM-IAVMLIKDIAQ--AIKSNGFKKLIIFLAPTVHL 105
Q V E A R+ I TG GKT+ + +I I + A G L + LAPT L
Sbjct: 131 QKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTREL 190
Query: 106 VHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
Q R + YG + + Q Q + DV V TP ++D +++ L
Sbjct: 191 ARQVEKEFRESAPSLDTICLYGGTPIGQ---QMRQLDYGV-DVAVGTPGRVIDLMKRGAL 246
Query: 165 SLDIVCFIVIDE 176
+L V F+V+DE
Sbjct: 247 NLSEVQFVVLDE 258
>DICTYBASE|DDB_G0269146 [details] [associations]
symbol:ifdA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269146
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0045335 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K03257 OMA:AVINYHI EMBL:U78759
RefSeq:XP_645917.1 ProteinModelPortal:P90529 STRING:P90529
PRIDE:P90529 EnsemblProtists:DDB0191262 GeneID:8616858
KEGG:ddi:DDB_G0269146 InParanoid:P90529 Uniprot:P90529
Length = 395
Score = 123 (48.4 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 36/109 (33%), Positives = 57/109 (52%)
Query: 435 KKVPFLTH-LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
+KV +LT +T T S+T D K + +L++FR G +L TD++ G+ V
Sbjct: 274 RKVDWLTSKMTEQKFTVSSTHGDQ---KDRDGILQAFRSGATRVLITTDLLARGIDVQQV 330
Query: 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILM--LERSERSVTDTALSR 540
S VI FDLP + +YI GR+ + + + + + +ER D LSR
Sbjct: 331 SLVINFDLPTNIENYIHRIGRSGRFGRKGVAINFITDAERGQIDE-LSR 378
Score = 78 (32.5 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 34/133 (25%), Positives = 59/133 (44%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q + ++K + IA ++G GKT A + I I + K + +APT L
Sbjct: 50 IQQRAIIPLSKGFDIIAQAQSGTGKT--ATFTV-GILSRIDISVLKCQALIIAPTRELAQ 106
Query: 108 QQYDVIRVHTDF-EVEEYY---GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
Q V+ ++ ++ Y G K D D Q Q ++ V+V TP + + L +
Sbjct: 107 QIQKVVLALGEYLHIKSYACIGGTKITD--DIQALQSGVH---VVVGTPGRVFEMLSRGI 161
Query: 164 LSLDIVCFIVIDE 176
++ D + +DE
Sbjct: 162 INRDTIRIFCLDE 174
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 104 (41.7 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
VL+ F+ G++++L ATD+ G+ + VI FDLP++ + Y+ GR+
Sbjct: 295 VLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRS 344
Score = 99 (39.9 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 56/204 (27%), Positives = 91/204 (44%)
Query: 56 VAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAI---KSNGFKKLIIFLAPTVHLVHQQYD 111
V R+ +A TG+GKT A+ L++ +++A KS G + ++ L PT L Q D
Sbjct: 43 VLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKSAGVVRCLV-LVPTRELAQQVAD 101
Query: 112 -VIRVHTDFEVE-EYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIV 169
+ + F + + A G + Q DVLV TP LLD L L L V
Sbjct: 102 SFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGA-DVLVATPGRLLDLLASNALKLTQV 160
Query: 170 CFIVIDECHHATGNHPYTKIMKEFYHKSDNKPK--VFGMTASPVVRKGVSSAMD--CEGQ 225
V+DE + +T+ +++ + + +F T VR + + E
Sbjct: 161 SAFVLDEADRML-SLGFTEELEQVLAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYH 219
Query: 226 I-SELESTLDSQVFTI--EDKTEM 246
+ SE EST++ +V T+ E KT +
Sbjct: 220 LQSEQESTIEQRVITVNREQKTAL 243
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 104 (41.7 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
VL+ F+ G++++L ATD+ G+ + VI FDLP++ + Y+ GR+
Sbjct: 295 VLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRS 344
Score = 99 (39.9 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 56/204 (27%), Positives = 91/204 (44%)
Query: 56 VAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAI---KSNGFKKLIIFLAPTVHLVHQQYD 111
V R+ +A TG+GKT A+ L++ +++A KS G + ++ L PT L Q D
Sbjct: 43 VLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKSAGVVRCLV-LVPTRELAQQVAD 101
Query: 112 -VIRVHTDFEVE-EYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIV 169
+ + F + + A G + Q DVLV TP LLD L L L V
Sbjct: 102 SFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGA-DVLVATPGRLLDLLASNALKLTQV 160
Query: 170 CFIVIDECHHATGNHPYTKIMKEFYHKSDNKPK--VFGMTASPVVRKGVSSAMD--CEGQ 225
V+DE + +T+ +++ + + +F T VR + + E
Sbjct: 161 SAFVLDEADRML-SLGFTEELEQVLAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYH 219
Query: 226 I-SELESTLDSQVFTI--EDKTEM 246
+ SE EST++ +V T+ E KT +
Sbjct: 220 LQSEQESTIEQRVITVNREQKTAL 243
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 126 (49.4 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 40/130 (30%), Positives = 63/130 (48%)
Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV---KKVPFL-THLTV 445
V +G + ++ Q L G+ ++ ++ + R I + FV KK F+ T L
Sbjct: 477 VAVGQVGGACRDVQQSILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQ 536
Query: 446 AYLTGSTTSVDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
+ STTS+ + ++E L FR GK +L AT V G+ + N +VI FDLP T
Sbjct: 537 EKI--STTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPST 594
Query: 505 VSSYIQSRGR 514
+ Y+ GR
Sbjct: 595 IDEYVHRIGR 604
Score = 81 (33.6 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 33/123 (26%), Positives = 58/123 (47%)
Query: 60 RNTIAVLETGAGKT--MIAVMLIKDIAQAIKSNGFKKL----IIFLAPTVHLVHQQYDVI 113
R+ +A +TG+GKT + +L + I ++ FK+L I +APT L++Q Y
Sbjct: 300 RDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEA 359
Query: 114 RVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIV 173
R + G ++ Q + ++L TP L+D + K + L V ++V
Sbjct: 360 RKFSFGTCVRAVVIYGGTQFGHSIRQI-VQGCNILCATPGRLMDIIGKEKIGLKQVKYLV 418
Query: 174 IDE 176
+DE
Sbjct: 419 LDE 421
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 103 (41.3 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
VL FR GK ++ ATDV G+ V + YVI +D P ++ Y+ GR
Sbjct: 386 VLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGR 434
Score = 101 (40.6 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 33/125 (26%), Positives = 67/125 (53%)
Query: 58 KRRNTIAVLETGAGKTMIAVM--LIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ-QYDVIR 114
K R+ I + ETG+GKT+ ++ ++ AQ + ++G +++ LAPT L Q Q + +
Sbjct: 135 KGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASK 194
Query: 115 VHTDFEVEE--YYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCF 171
+ +++ YG GV + +++ K ++++ TP L+D + +L V +
Sbjct: 195 FGSSSKIKTTCIYG--GVPKGPQV---RDLQKGVEIVIATPGRLIDMMESNNTNLRRVTY 249
Query: 172 IVIDE 176
+V+DE
Sbjct: 250 LVLDE 254
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 126 (49.4 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 40/130 (30%), Positives = 63/130 (48%)
Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV---KKVPFL-THLTV 445
V +G + ++ Q L G+ ++ ++ + R I + FV KK F+ T L
Sbjct: 483 VAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQ 542
Query: 446 AYLTGSTTSVDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
+ STTS+ + ++E L FR GK +L AT V G+ + N +VI FDLP T
Sbjct: 543 EKI--STTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPST 600
Query: 505 VSSYIQSRGR 514
+ Y+ GR
Sbjct: 601 IDEYVHRIGR 610
Score = 81 (33.6 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 35/126 (27%), Positives = 58/126 (46%)
Query: 60 RNTIAVLETGAGKT--MIAVMLIKDIAQAIKSNGFKKL----IIFLAPTVHLVHQQYDVI 113
R+ +A +TG+GKT + +L + I ++ FK+L I +APT LV+Q Y
Sbjct: 306 RDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEA 365
Query: 114 RVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
R T YG + Q + ++L TP L+D + K + L +
Sbjct: 366 RKFSFGTCVRAVVIYGGTQLGHSIRQI----VQGCNILCATPGRLMDIIGKEKIGLKQIK 421
Query: 171 FIVIDE 176
++V+DE
Sbjct: 422 YLVLDE 427
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 106 (42.4 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 35/127 (27%), Positives = 59/127 (46%)
Query: 416 LCIIFVERIIAAKVVERFV---KKVPFLTHLTVAY-LTGSTTSVDALTPKVQKEVLESFR 471
LC ++ I V+ F+ +KV +LT A T S D + K + ++ FR
Sbjct: 258 LCDLYETLTITQAVI--FINTRRKVDWLTEKMHARDFTVSAMHGD-MDQKERDVIMREFR 314
Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI---LMLER 528
G +L TD++ G+ V S VI +DLP +YI GR + + + ++ E
Sbjct: 315 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 374
Query: 529 SERSVTD 535
+R++ D
Sbjct: 375 DKRTLRD 381
Score = 95 (38.5 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 35/163 (21%), Positives = 73/163 (44%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
I Q + K + IA ++G GKT A+ +++ I +K+ + L+ LAPT L
Sbjct: 58 IQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT--QALV--LAPTRELA 113
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
Q V+ D+ + G ++ + ++ ++V TP + D L + +LS
Sbjct: 114 QQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 173
Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209
+ V+DE + + + + + K ++ +V ++A+
Sbjct: 174 KYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSAT 215
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 126 (49.4 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 40/130 (30%), Positives = 63/130 (48%)
Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV---KKVPFL-THLTV 445
V +G + ++ Q L G+ ++ ++ + R I + FV KK F+ T L
Sbjct: 503 VAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQ 562
Query: 446 AYLTGSTTSVDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
+ STTS+ + ++E L FR GK +L AT V G+ + N +VI FDLP T
Sbjct: 563 EKI--STTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPST 620
Query: 505 VSSYIQSRGR 514
+ Y+ GR
Sbjct: 621 IDEYVHRIGR 630
Score = 81 (33.6 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 35/126 (27%), Positives = 58/126 (46%)
Query: 60 RNTIAVLETGAGKT--MIAVMLIKDIAQAIKSNGFKKL----IIFLAPTVHLVHQQYDVI 113
R+ +A +TG+GKT + +L + I ++ FK+L I +APT LV+Q Y
Sbjct: 326 RDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEA 385
Query: 114 RVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
R T YG + Q + ++L TP L+D + K + L +
Sbjct: 386 RKFSFGTCVRAVVIYGGTQLGHSIRQI----VQGCNILCATPGRLMDIIGKEKIGLKQIK 441
Query: 171 FIVIDE 176
++V+DE
Sbjct: 442 YLVLDE 447
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 106 (42.4 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 35/127 (27%), Positives = 59/127 (46%)
Query: 416 LCIIFVERIIAAKVVERFV---KKVPFLTHLTVAY-LTGSTTSVDALTPKVQKEVLESFR 471
LC ++ I V+ F+ +KV +LT A T S D + K + ++ FR
Sbjct: 263 LCDLYETLTITQAVI--FINTRRKVDWLTEKMHARDFTVSAMHGD-MDQKERDVIMREFR 319
Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI---LMLER 528
G +L TD++ G+ V S VI +DLP +YI GR + + + ++ E
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Query: 529 SERSVTD 535
+R++ D
Sbjct: 380 DKRTLRD 386
Score = 95 (38.5 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 35/163 (21%), Positives = 73/163 (44%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
I Q + K + IA ++G GKT A+ +++ I +K+ + L+ LAPT L
Sbjct: 58 IQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT--QALV--LAPTRELA 113
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
Q V+ D+ + G ++ + ++ ++V TP + D L + +LS
Sbjct: 114 QQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 173
Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209
+ V+DE + + + + + K ++ +V ++A+
Sbjct: 174 KYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSAT 215
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 106 (42.4 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 35/127 (27%), Positives = 59/127 (46%)
Query: 416 LCIIFVERIIAAKVVERFV---KKVPFLTHLTVAY-LTGSTTSVDALTPKVQKEVLESFR 471
LC ++ I V+ F+ +KV +LT A T S D + K + ++ FR
Sbjct: 263 LCDLYETLTITQAVI--FINTRRKVDWLTEKMHARDFTVSAMHGD-MDQKERDVIMREFR 319
Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI---LMLER 528
G +L TD++ G+ V S VI +DLP +YI GR + + + ++ E
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Query: 529 SERSVTD 535
+R++ D
Sbjct: 380 DKRTLRD 386
Score = 95 (38.5 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 35/163 (21%), Positives = 73/163 (44%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
I Q + K + IA ++G GKT A+ +++ I +K+ + L+ LAPT L
Sbjct: 58 IQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT--QALV--LAPTRELA 113
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
Q V+ D+ + G ++ + ++ ++V TP + D L + +LS
Sbjct: 114 QQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 173
Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209
+ V+DE + + + + + K ++ +V ++A+
Sbjct: 174 KYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSAT 215
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 106 (42.4 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 35/127 (27%), Positives = 59/127 (46%)
Query: 416 LCIIFVERIIAAKVVERFV---KKVPFLTHLTVAY-LTGSTTSVDALTPKVQKEVLESFR 471
LC ++ I V+ F+ +KV +LT A T S D + K + ++ FR
Sbjct: 263 LCDLYETLTITQAVI--FINTRRKVDWLTEKMHARDFTVSAMHGD-MDQKERDVIMREFR 319
Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI---LMLER 528
G +L TD++ G+ V S VI +DLP +YI GR + + + ++ E
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Query: 529 SERSVTD 535
+R++ D
Sbjct: 380 DKRTLRD 386
Score = 95 (38.5 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 35/163 (21%), Positives = 73/163 (44%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
I Q + K + IA ++G GKT A+ +++ I +K+ + L+ LAPT L
Sbjct: 58 IQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT--QALV--LAPTRELA 113
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
Q V+ D+ + G ++ + ++ ++V TP + D L + +LS
Sbjct: 114 QQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 173
Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209
+ V+DE + + + + + K ++ +V ++A+
Sbjct: 174 KYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSAT 215
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 106 (42.4 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 35/127 (27%), Positives = 59/127 (46%)
Query: 416 LCIIFVERIIAAKVVERFV---KKVPFLTHLTVAY-LTGSTTSVDALTPKVQKEVLESFR 471
LC ++ I V+ F+ +KV +LT A T S D + K + ++ FR
Sbjct: 263 LCDLYETLTITQAVI--FINTRRKVDWLTEKMHARDFTVSAMHGD-MDQKERDVIMREFR 319
Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI---LMLER 528
G +L TD++ G+ V S VI +DLP +YI GR + + + ++ E
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Query: 529 SERSVTD 535
+R++ D
Sbjct: 380 DKRTLRD 386
Score = 95 (38.5 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 35/163 (21%), Positives = 73/163 (44%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
I Q + K + IA ++G GKT A+ +++ I +K+ + L+ LAPT L
Sbjct: 58 IQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT--QALV--LAPTRELA 113
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
Q V+ D+ + G ++ + ++ ++V TP + D L + +LS
Sbjct: 114 QQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 173
Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209
+ V+DE + + + + + K ++ +V ++A+
Sbjct: 174 KYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSAT 215
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 106 (42.4 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 35/127 (27%), Positives = 59/127 (46%)
Query: 416 LCIIFVERIIAAKVVERFV---KKVPFLTHLTVAY-LTGSTTSVDALTPKVQKEVLESFR 471
LC ++ I V+ F+ +KV +LT A T S D + K + ++ FR
Sbjct: 263 LCDLYETLTITQAVI--FINTRRKVDWLTEKMHARDFTVSAMHGD-MDQKERDVIMREFR 319
Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI---LMLER 528
G +L TD++ G+ V S VI +DLP +YI GR + + + ++ E
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Query: 529 SERSVTD 535
+R++ D
Sbjct: 380 DKRTLRD 386
Score = 95 (38.5 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 35/163 (21%), Positives = 73/163 (44%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
I Q + K + IA ++G GKT A+ +++ I +K+ + L+ LAPT L
Sbjct: 58 IQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT--QALV--LAPTRELA 113
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
Q V+ D+ + G ++ + ++ ++V TP + D L + +LS
Sbjct: 114 QQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 173
Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209
+ V+DE + + + + + K ++ +V ++A+
Sbjct: 174 KYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSAT 215
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 106 (42.4 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 35/127 (27%), Positives = 59/127 (46%)
Query: 416 LCIIFVERIIAAKVVERFV---KKVPFLTHLTVAY-LTGSTTSVDALTPKVQKEVLESFR 471
LC ++ I V+ F+ +KV +LT A T S D + K + ++ FR
Sbjct: 263 LCDLYETLTITQAVI--FINTRRKVDWLTEKMHARDFTVSAMHGD-MDQKERDVIMREFR 319
Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI---LMLER 528
G +L TD++ G+ V S VI +DLP +YI GR + + + ++ E
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Query: 529 SERSVTD 535
+R++ D
Sbjct: 380 DKRTLRD 386
Score = 95 (38.5 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 35/163 (21%), Positives = 73/163 (44%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
I Q + K + IA ++G GKT A+ +++ I +K+ + L+ LAPT L
Sbjct: 58 IQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT--QALV--LAPTRELA 113
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
Q V+ D+ + G ++ + ++ ++V TP + D L + +LS
Sbjct: 114 QQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 173
Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209
+ V+DE + + + + + K ++ +V ++A+
Sbjct: 174 KYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSAT 215
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 106 (42.4 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 35/127 (27%), Positives = 59/127 (46%)
Query: 416 LCIIFVERIIAAKVVERFV---KKVPFLTHLTVAY-LTGSTTSVDALTPKVQKEVLESFR 471
LC ++ I V+ F+ +KV +LT A T S D + K + ++ FR
Sbjct: 263 LCDLYETLTITQAVI--FINTRRKVDWLTEKMHARDFTVSAMHGD-MDQKERDVIMREFR 319
Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI---LMLER 528
G +L TD++ G+ V S VI +DLP +YI GR + + + ++ E
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Query: 529 SERSVTD 535
+R++ D
Sbjct: 380 DKRTLRD 386
Score = 95 (38.5 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 35/163 (21%), Positives = 73/163 (44%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
I Q + K + IA ++G GKT A+ +++ I +K+ + L+ LAPT L
Sbjct: 58 IQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT--QALV--LAPTRELA 113
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
Q V+ D+ + G ++ + ++ ++V TP + D L + +LS
Sbjct: 114 QQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 173
Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209
+ V+DE + + + + + K ++ +V ++A+
Sbjct: 174 KYIKMFVLDEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSAT 215
>SGD|S000002651 [details] [associations]
symbol:PRP28 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005681 "spliceosomal
complex" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0000354 "cis
assembly of pre-catalytic spliceosome" evidence=TAS] [GO:0005682
"U5 snRNP" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002651 GO:GO:0005524
GO:GO:0005737 EMBL:BK006938 GO:GO:0005681 GO:GO:0005682
GO:GO:0003676 EMBL:Z49701 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
RefSeq:NP_010529.3 GeneID:851830 KEGG:sce:YDR243C KO:K12858
HOGENOM:HOG000268796 OrthoDB:EOG4KPXK0 EMBL:X56934 PIR:A39624
RefSeq:NP_878065.3 ProteinModelPortal:P23394 SMR:P23394
DIP:DIP-6324N IntAct:P23394 MINT:MINT-599541 STRING:P23394
PaxDb:P23394 PeptideAtlas:P23394 EnsemblFungi:YDR243C
GeneID:1466436 KEGG:sce:YDR246W-A CYGD:YDR243c OMA:HEMNERD
NextBio:969715 Genevestigator:P23394 GermOnline:YDR243C
Uniprot:P23394
Length = 588
Score = 110 (43.8 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 418 IIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
IIF+ + A + E+F K+ T++ V L GS + + ++ L+ FR KV
Sbjct: 440 IIFINYKQTADWLAEKFQKE----TNMKVTILHGSKSQ------EQREHSLQLFRTNKVQ 489
Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
++ AT+V G+ +PN S V+ F + K + YI GR
Sbjct: 490 IMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGR 527
Score = 95 (38.5 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 49/188 (26%), Positives = 82/188 (43%)
Query: 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVM--LIKDIAQAIKSNGFKKL----IIF 98
I RI V + + R+ + V TG+GKT+ V+ LIK + K + +
Sbjct: 200 IQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKIIDGPKALI 259
Query: 99 LAPTVHLVHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK---EINKN-DVLVMTPQ 153
LAPT LV Q Q + +V + E Y K + ++ +++ D+LV TP
Sbjct: 260 LAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPG 319
Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATG---NHPYTKIMKEFYHKSDN----KPKVFGM 206
L+D+L L + V +V+DE T I+ + +D+ + +F
Sbjct: 320 RLIDSLENHLLVMKQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQTLMFTA 379
Query: 207 TASPVVRK 214
T +PV+ K
Sbjct: 380 TMTPVIEK 387
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 128 (50.1 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 40/130 (30%), Positives = 63/130 (48%)
Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV---KKVPFL-THLTV 445
V +G + ++ Q L G+ ++ ++ + R I + FV KK F+ T L
Sbjct: 504 VAVGQVGGACRDVQQTILQVGQYSKREKLVEILRSIGDERTMVFVETKKKADFIATFLCQ 563
Query: 446 AYLTGSTTSVDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
+ STTS+ + ++E L FR GK +L AT V G+ + N +VI FDLP T
Sbjct: 564 EKI--STTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPST 621
Query: 505 VSSYIQSRGR 514
+ Y+ GR
Sbjct: 622 IDEYVHRIGR 631
Score = 78 (32.5 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 35/126 (27%), Positives = 58/126 (46%)
Query: 60 RNTIAVLETGAGKT--MIAVMLIKDIAQAIKSNGFKKL----IIFLAPTVHLVHQQYDVI 113
R+ +A +TG+GKT + +L + I ++ FK+L I +APT L++Q Y
Sbjct: 327 RDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELINQIYLEA 386
Query: 114 RVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
R T YG + Q + ++L TP L+D + K + L V
Sbjct: 387 RKFSFGTCVRAVVIYGGTQLGYSIRQI----VQGCNILCATPGRLMDIIGKEKIGLRQVK 442
Query: 171 FIVIDE 176
++V+DE
Sbjct: 443 YLVLDE 448
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 126 (49.4 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 40/130 (30%), Positives = 63/130 (48%)
Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV---KKVPFL-THLTV 445
V +G + ++ Q L G+ ++ ++ + R I + FV KK F+ T L
Sbjct: 504 VAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQ 563
Query: 446 AYLTGSTTSVDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
+ STTS+ + ++E L FR GK +L AT V G+ + N +VI FDLP T
Sbjct: 564 EKI--STTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPST 621
Query: 505 VSSYIQSRGR 514
+ Y+ GR
Sbjct: 622 IDEYVHRIGR 631
Score = 80 (33.2 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 35/126 (27%), Positives = 58/126 (46%)
Query: 60 RNTIAVLETGAGKT--MIAVMLIKDIAQAIKSNGFKKL----IIFLAPTVHLVHQQYDVI 113
R+ +A +TG+GKT + +L + I ++ FK+L I +APT LV+Q Y
Sbjct: 327 RDLMACAQTGSGKTAAFLLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEA 386
Query: 114 RVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
R T YG + Q + ++L TP L+D + K + L +
Sbjct: 387 RKFSFGTCVRAVVIYGGTQLGHSIRQI----VQGCNILCATPGRLMDIIGKEKIGLKQIK 442
Query: 171 FIVIDE 176
++V+DE
Sbjct: 443 YLVLDE 448
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 103 (41.3 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 50/220 (22%), Positives = 100/220 (45%)
Query: 309 QLSDYHAKILYCLDELGLICAYEAVKIC----LEKVLKAQEECEIYRQSSLQCKYFLEEV 364
+L D + + DE+ ++ EA ++ +E + E+ RQ+ L ++V
Sbjct: 133 RLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQNLLFSATLSKQV 192
Query: 365 LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS--FGKSTQVLCIIFVE 422
+ +A+P A +I + S +D +++T + LS ++ +IF++
Sbjct: 193 KALAKTAIPDAIEIEISRKNAASTQIDQ-WLTTVDKDRKSALLSHLIKENNWAQALIFIQ 251
Query: 423 -RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFAT 481
+ AAK+V + K+ + A+ +G + ++ ++++L F+ GKV L AT
Sbjct: 252 TKHGAAKLVSQLEKR----GIVAEAFHSGRSQAI-------REQLLIDFKAGKVPFLVAT 300
Query: 482 DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
V+ G+ + VI +DLP YI GR + +Q
Sbjct: 301 GVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQ 340
Score = 99 (39.9 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 38/121 (31%), Positives = 54/121 (44%)
Query: 60 RNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFKKLIIFLAPTVHL---VHQQYDVIRV 115
+N +A +TG GKT V+ L+ A A K + I L PT L V Q +
Sbjct: 39 KNVLAAAQTGTGKTASFVLPLLHRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAK 98
Query: 116 HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVID 175
+ YG GVD + ++ I D+LV TP LLD + + D V +V+D
Sbjct: 99 YLPLTAMAMYG--GVDAAPQK--KRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLD 154
Query: 176 E 176
E
Sbjct: 155 E 155
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 103 (41.3 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 50/220 (22%), Positives = 100/220 (45%)
Query: 309 QLSDYHAKILYCLDELGLICAYEAVKIC----LEKVLKAQEECEIYRQSSLQCKYFLEEV 364
+L D + + DE+ ++ EA ++ +E + E+ RQ+ L ++V
Sbjct: 133 RLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQNLLFSATLSKQV 192
Query: 365 LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS--FGKSTQVLCIIFVE 422
+ +A+P A +I + S +D +++T + LS ++ +IF++
Sbjct: 193 KALAKTAIPDAIEIEISRKNAASTQIDQ-WLTTVDKDRKSALLSHLIKENNWAQALIFIQ 251
Query: 423 -RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFAT 481
+ AAK+V + K+ + A+ +G + ++ ++++L F+ GKV L AT
Sbjct: 252 TKHGAAKLVSQLEKR----GIVAEAFHSGRSQAI-------REQLLIDFKAGKVPFLVAT 300
Query: 482 DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
V+ G+ + VI +DLP YI GR + +Q
Sbjct: 301 GVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQ 340
Score = 99 (39.9 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 38/121 (31%), Positives = 54/121 (44%)
Query: 60 RNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFKKLIIFLAPTVHL---VHQQYDVIRV 115
+N +A +TG GKT V+ L+ A A K + I L PT L V Q +
Sbjct: 39 KNVLAAAQTGTGKTASFVLPLLHRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAK 98
Query: 116 HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVID 175
+ YG GVD + ++ I D+LV TP LLD + + D V +V+D
Sbjct: 99 YLPLTAMAMYG--GVDAAPQK--KRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLD 154
Query: 176 E 176
E
Sbjct: 155 E 155
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 108 (43.1 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 52/183 (28%), Positives = 82/183 (44%)
Query: 341 LKA-QEECEIYRQSSLQCKYFLEEV-LHVIGSALPLADKIFLDFGFDYSKAVDLG---YI 395
LKA E + R+ +L L+ ++ I +AL L + + + G +++ D+ Y+
Sbjct: 168 LKAINEAADHKRRQTLMFSATLDHSEINEIAAAL-LKNPLHVAIGTAHAEHQDISQRIYL 226
Query: 396 STKL-HE--LLQLFLSFGKSTQVLCIIFVERIIAAKV-VERFVKKVPFLTHLTVAYLTGS 451
L H+ LL LS QV IIF A + ER K+ T A L+G
Sbjct: 227 CDHLDHKEALLSRLLSDESHKQV--IIFT----ATRADTERLAAKLSAQGFATAA-LSGE 279
Query: 452 TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
L + ++++ F G+ +L TDV G+ + N S VI FD+PK Y+
Sbjct: 280 ------LKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHR 333
Query: 512 RGR 514
GR
Sbjct: 334 IGR 336
Score = 93 (37.8 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 39/171 (22%), Positives = 75/171 (43%)
Query: 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL---IIFLAP 101
P Q + +A ++ +A +TG+GKT+ L+ + + I + K ++ L P
Sbjct: 24 PTAIQEQALPIALAGKDLMASSKTGSGKTL--AFLLPALQRVISTRALSKRDPRVLILLP 81
Query: 102 TVHLVHQQYDVIRV---HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158
T L HQ Y +R+ +T ++ G + ++ ++ KE + +V TP + D
Sbjct: 82 TRELAHQVYSQLRLLVANTQYKAISVLGGENFND-QAKALAKEPH---FIVATPGRIADH 137
Query: 159 LRKAFLSLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKSDNKPKVFGMT 207
L + L L+ + +++DE G P K + E + +F T
Sbjct: 138 LEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQTLMFSAT 188
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 108 (43.1 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 52/183 (28%), Positives = 82/183 (44%)
Query: 341 LKA-QEECEIYRQSSLQCKYFLEEV-LHVIGSALPLADKIFLDFGFDYSKAVDLG---YI 395
LKA E + R+ +L L+ ++ I +AL L + + + G +++ D+ Y+
Sbjct: 168 LKAINEAADHKRRQTLMFSATLDHSEINEIAAAL-LKNPLHVAIGTAHAEHQDISQRIYL 226
Query: 396 STKL-HE--LLQLFLSFGKSTQVLCIIFVERIIAAKV-VERFVKKVPFLTHLTVAYLTGS 451
L H+ LL LS QV IIF A + ER K+ T A L+G
Sbjct: 227 CDHLDHKEALLSRLLSDESHKQV--IIFT----ATRADTERLAAKLSAQGFATAA-LSGE 279
Query: 452 TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
L + ++++ F G+ +L TDV G+ + N S VI FD+PK Y+
Sbjct: 280 ------LKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHR 333
Query: 512 RGR 514
GR
Sbjct: 334 IGR 336
Score = 93 (37.8 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 39/171 (22%), Positives = 75/171 (43%)
Query: 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL---IIFLAP 101
P Q + +A ++ +A +TG+GKT+ L+ + + I + K ++ L P
Sbjct: 24 PTAIQEQALPIALAGKDLMASSKTGSGKTL--AFLLPALQRVISTRALSKRDPRVLILLP 81
Query: 102 TVHLVHQQYDVIRV---HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158
T L HQ Y +R+ +T ++ G + ++ ++ KE + +V TP + D
Sbjct: 82 TRELAHQVYSQLRLLVANTQYKAISVLGGENFND-QAKALAKEPH---FIVATPGRIADH 137
Query: 159 LRKAFLSLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKSDNKPKVFGMT 207
L + L L+ + +++DE G P K + E + +F T
Sbjct: 138 LEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQTLMFSAT 188
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 123 (48.4 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 34/117 (29%), Positives = 58/117 (49%)
Query: 463 QKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNS 520
Q+E L +FR GK +L ATDV G+ +PN VI ++LP +++ GR R
Sbjct: 388 QRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKE 447
Query: 521 QFILMLERSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIH 577
+++ S + T +L RD C + + T ++ES+ V +++N +H
Sbjct: 448 GSAILMHTSSQKRTVRSLERDV-GCHFEFIS-PPTVGDLLESSADQVV--ATLNGVH 500
Score = 83 (34.3 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 37/126 (29%), Positives = 59/126 (46%)
Query: 60 RNTIAVLETGAGKTM-IAVMLIKDIAQ------AIKSNGFKKLIIFLAPTVHLVHQQYDV 112
R+ IA +TG GKT+ + +IK + + A + +G + LAPT L Q
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE 199
Query: 113 IRVHTDF-EVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVC 170
I+ + YG GV + Q Q + + DV+V TP ++D + L L V
Sbjct: 200 IKESAPYLSTVCVYG--GVS-YTIQ--QSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVE 254
Query: 171 FIVIDE 176
++V+DE
Sbjct: 255 YLVLDE 260
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 103 (41.3 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 45/176 (25%), Positives = 74/176 (42%)
Query: 56 VAKRRNTIAVLETGAGKTMIAV--MLIKDIAQAIK---SNGFKKLIIFLAPTVHLVHQQY 110
V R+ I + TG+GKT++ V M+I + + I + G + + + P+ L Q Y
Sbjct: 131 VLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTY 190
Query: 111 DVIRVHTDFEVEEYY----GAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLS 165
DV+ VE+ Y + D + + K ++V TP L D L K +S
Sbjct: 191 DVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMS 250
Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAM 220
LD + +DE I F H KS + +F T ++ +SA+
Sbjct: 251 LDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSAL 306
Score = 100 (40.3 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
F+ GK ++L ATDV +G+ P+ +VI +D+P + +Y+ GR
Sbjct: 394 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGR 438
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 110 (43.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 58/232 (25%), Positives = 102/232 (43%)
Query: 45 IPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
+P Q++ VA + R+ I + ETG+GKT + I QA+ + + L PT
Sbjct: 47 VPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFAL---PILQALLDAPQRLFALVLTPTR 103
Query: 104 HLVHQ---QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
L Q Q++ + + V G+D SQ K +++ TP L+D L
Sbjct: 104 ELAFQISEQFEALG--SSIGVHSAVIVGGIDSM-SQSLALA-KKPHIIIATPGRLVDHLE 159
Query: 161 --KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVS 217
K F +L + F+V+DE T++ K D K +F T + V+K
Sbjct: 160 NTKGF-NLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKQVQKLQR 218
Query: 218 SAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSA-KESCRFYDQSKFCGS 268
+A+ + ++ + S+ T+E + +F+PS K+S Y ++ G+
Sbjct: 219 AALK-----NPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGN 265
Score = 90 (36.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNS 520
L F+ ++L ATDV G+ +P+ VI FD+P YI GR AR S
Sbjct: 307 LNKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRS 361
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 107 (42.7 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 463 QKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
Q+E LE F+ K +L AT V G+HV ++VI FD+PK + Y GR + S
Sbjct: 719 QREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGS 777
Score = 103 (41.3 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 40/128 (31%), Positives = 66/128 (51%)
Query: 60 RNTIAVLETGAGKTMIAV--MLI---KD--IAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112
R+ + + ETG+GKT V MLI K + + +++G L+ +APT LV Q
Sbjct: 451 RDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALV--MAPTRELVQQIEKE 508
Query: 113 IR---VHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDI 168
R H F V G + +++ Q +Q ++K ++++ TP L D L K +L L+
Sbjct: 509 TRNFAQHFGFRVVSLVGGQSIED---QAYQ--VSKGCEIIIATPGRLNDCLEKRYLVLNQ 563
Query: 169 VCFIVIDE 176
+IV+DE
Sbjct: 564 CNYIVLDE 571
Score = 44 (20.5 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 565 ASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAY 604
+S TD V +++ ++L S P + K+ S+++ +
Sbjct: 782 SSFITDKDVEIMYDLKQILTSTNNIVPIELLKHPSSQQKH 821
>UNIPROTKB|C9JG98 [details] [associations]
symbol:DHX58 "Probable ATP-dependent RNA helicase DHX58"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0032480 "negative regulation of type I interferon
production" evidence=IEA] [GO:0032481 "positive regulation of type
I interferon production" evidence=IEA] [GO:0039536 "negative
regulation of RIG-I signaling pathway" evidence=IEA] [GO:0045824
"negative regulation of innate immune response" evidence=IEA]
[GO:1900245 "positive regulation of MDA-5 signaling pathway"
evidence=IEA] [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR006935 Pfam:PF04851 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0051607 GO:GO:0016787 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0032480 GO:GO:0039536
GO:GO:0045824 GO:GO:1900245 GO:GO:1900246 HGNC:HGNC:29517
HOGENOM:HOG000230992 ChiTaRS:DHX58 GO:GO:0032481 EMBL:AC105024
IPI:IPI00792703 ProteinModelPortal:C9JG98 SMR:C9JG98 STRING:C9JG98
Ensembl:ENST00000413196 ArrayExpress:C9JG98 Bgee:C9JG98
Uniprot:C9JG98
Length = 302
Score = 145 (56.1 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 57/194 (29%), Positives = 87/194 (44%)
Query: 47 RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
R YQ +V A + +N I L TGAGKT A + K + + +G K ++ L VHL
Sbjct: 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59
Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
V Q + R D + V G G +D+L+ T ++L AL
Sbjct: 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHL----ARCHDLLICTAELLQMALTSPE 115
Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH----KSDNKPKVFGMTASPVVRKG 215
+ + L + IV+DECHH + Y IM ++ ++ P+V G+TASP G
Sbjct: 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASP----G 171
Query: 216 VSSAMDCEGQISEL 229
A +G I+ +
Sbjct: 172 TGGASKLDGAINHV 185
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 129 (50.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 57/199 (28%), Positives = 87/199 (43%)
Query: 345 EECEIY----RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG----YIS 396
E+C++ RQ+ + F ++ H+ L +D IFL G S + ++ Y+
Sbjct: 325 EDCDMTPVGERQTLMFSATFPADIQHLARDFL--SDYIFLSVGRVGSTSENITQKVLYVE 382
Query: 397 T--KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS 454
K LL L LS ST L +IFVE A + F+ + + + G T
Sbjct: 383 NQDKKSALLDL-LS--ASTDGLTLIFVETKRMADQLTDFL----IMQNFRATAIHGDRTQ 435
Query: 455 VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+ ++ L +FR G LL AT V G+ +PN ++VI +DLP V Y+ GR
Sbjct: 436 SE------RERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGR 489
Query: 515 A-RQHNSQFILMLERSERS 532
R N+ SE S
Sbjct: 490 TGRAGNTGLATAFFNSENS 508
Score = 73 (30.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 40/136 (29%), Positives = 63/136 (46%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIK--------SNG-F--KKLI---IFLAP 101
VA R+ +A +TG+GKT L ++++ K S G F +K + +AP
Sbjct: 176 VANGRDLMACAQTGSGKT--GGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAP 233
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALR 160
T L Q +D + T + G +Q +EI + D+LV TP L D L
Sbjct: 234 TRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQL--REIERGCDLLVATPGRLNDLLE 291
Query: 161 KAFLSLDIVCFIVIDE 176
+ +SL V ++V+DE
Sbjct: 292 RGKISLANVKYLVLDE 307
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 125 (49.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 35/112 (31%), Positives = 56/112 (50%)
Query: 403 LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKV 462
+Q FL ST + I+FV R K V + L +++V L G D
Sbjct: 477 MQTFLQSMSSTDKV-IVFVSR----KAVADHLSSDLILGNISVESLHGDREQRD------ 525
Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+++ LE+F+ GKV +L ATD+ G+ V + ++V FD P+ + Y+ GR
Sbjct: 526 REKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGR 577
Score = 77 (32.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 33/120 (27%), Positives = 57/120 (47%)
Query: 63 IAVLETGAGKTMIAVM--LIKDIAQ-AIKSNGFKKLIIFLAPTVHLVHQ-QYDVIRV-HT 117
I V +TG GKT+ +M I + Q ++K + ++ L PT L Q + + + +
Sbjct: 283 IGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK 342
Query: 118 DFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCFIVIDE 176
YG DE Q +E+ K D+++ TP L D F++L + ++V+DE
Sbjct: 343 GLRSVCVYGGGNRDE---QI--EELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDE 397
>UNIPROTKB|Q9NR30 [details] [associations]
symbol:DDX21 "Nucleolar RNA helicase 2" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:CH471083 GO:GO:0009615 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:U41387 EMBL:AF261903 EMBL:AF261917 EMBL:AF261904 EMBL:AF261905
EMBL:AF261906 EMBL:AF261907 EMBL:AF261908 EMBL:AF261909
EMBL:AF261910 EMBL:AF261911 EMBL:AF261912 EMBL:AF261913
EMBL:AF261914 EMBL:AF261915 EMBL:AF261916 EMBL:AK315585
EMBL:CR749598 EMBL:AL359844 EMBL:BC008071 IPI:IPI00015953
IPI:IPI00477179 PIR:PC6010 RefSeq:NP_001243839.1 RefSeq:NP_004719.2
UniGene:Hs.223141 ProteinModelPortal:Q9NR30 SMR:Q9NR30
IntAct:Q9NR30 MINT:MINT-231639 STRING:Q9NR30 PhosphoSite:Q9NR30
DMDM:76803555 SWISS-2DPAGE:Q9NR30 PaxDb:Q9NR30 PeptideAtlas:Q9NR30
PRIDE:Q9NR30 DNASU:9188 Ensembl:ENST00000354185 GeneID:9188
KEGG:hsa:9188 UCSC:uc001jov.1 CTD:9188 GeneCards:GC10P070715
H-InvDB:HIX0008880 HGNC:HGNC:2744 HPA:HPA036592 MIM:606357
neXtProt:NX_Q9NR30 PharmGKB:PA27210 HOGENOM:HOG000268805
HOVERGEN:HBG051331 InParanoid:Q9NR30 OMA:EILCVAY OrthoDB:EOG46143T
PhylomeDB:Q9NR30 ChiTaRS:DDX21 GenomeRNAi:9188 NextBio:34453
ArrayExpress:Q9NR30 Bgee:Q9NR30 CleanEx:HS_DDX21
Genevestigator:Q9NR30 GermOnline:ENSG00000165732 Uniprot:Q9NR30
Length = 783
Score = 107 (42.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 460 PKVQKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
P+ Q+E+ L+ FR G +L AT+V G+ +P VI+ PK V SYI GR
Sbjct: 472 PQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGR 527
Score = 97 (39.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 38/132 (28%), Positives = 61/132 (46%)
Query: 50 QLKVFE-VAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAI--KSNGFKKLIIFLAPTVHL 105
Q K F V ++ IA TG GKT A+ LI+ + + + G ++ LAPT L
Sbjct: 213 QAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTREL 272
Query: 106 VHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
+Q D + V +YG + Q +++ N D+LV TP + D ++ L
Sbjct: 273 ANQVSKDFSDITKKLSVACFYGGT---PYGGQ-FERMRNGIDILVGTPGRIKDHIQNGKL 328
Query: 165 SLDIVCFIVIDE 176
L + +V+DE
Sbjct: 329 DLTKLKHVVLDE 340
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 107 (42.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 461 KVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+ Q+E L FR G ++L ATDV G+ VPN VI ++LP +++ GR
Sbjct: 396 QAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGR 450
Score = 94 (38.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 39/133 (29%), Positives = 58/133 (43%)
Query: 50 QLKVFEVAKR-RNTIAVLETGAGKTM-IAVMLIKDIAQ--AIKSNGFKKLIIFLAPTVHL 105
Q V E A R+ I TG GKT+ + +I I + A G + LAPT L
Sbjct: 143 QKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTREL 202
Query: 106 VHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAF 163
Q R + YG + + +E+N DV V TP ++D +++
Sbjct: 203 ARQVEKEFRESAPSLDTICLYGGTPIGQQ-----MRELNYGIDVAVGTPGRIIDLMKRGA 257
Query: 164 LSLDIVCFIVIDE 176
L+L V F+V+DE
Sbjct: 258 LNLSEVQFVVLDE 270
>TAIR|locus:2008296 [details] [associations]
symbol:AT1G51380 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005730 EMBL:AC024261
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 EMBL:AC006085 KO:K13025
EMBL:AY058890 EMBL:AY079046 IPI:IPI00529522 PIR:H96551
RefSeq:NP_175549.1 UniGene:At.11244 ProteinModelPortal:Q9C8J1
SMR:Q9C8J1 PaxDb:Q9C8J1 PRIDE:Q9C8J1 EnsemblPlants:AT1G51380.1
GeneID:841562 KEGG:ath:AT1G51380 GeneFarm:1010 TAIR:At1g51380
InParanoid:Q9C8J1 OMA:DITNITH PhylomeDB:Q9C8J1
ProtClustDB:CLSN2912843 Genevestigator:Q9C8J1 GermOnline:AT1G51380
Uniprot:Q9C8J1
Length = 392
Score = 101 (40.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 34/133 (25%), Positives = 63/133 (47%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKT-MIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
I Q + + K R+ IA ++G GKT MIA+ + Q + + K ++ L+P+ L
Sbjct: 48 IQQRALVPILKGRDVIAQAQSGTGKTSMIAI----SVCQIVNISSRKVQVLVLSPSRELA 103
Query: 107 HQQYDVIRV---HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
Q I+ HT+ + G K + E D + ++ ++ + TP + D +++
Sbjct: 104 SQTEKTIQAIGAHTNIQAHACIGGKSIGE-DIKKLERGVH---AVSGTPGRVYDMIKRGS 159
Query: 164 LSLDIVCFIVIDE 176
L V +V+DE
Sbjct: 160 LQTKAVKLLVLDE 172
Score = 95 (38.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
K + +++ FR K +L A+DV G+ V S+VI +D+P YI GRA
Sbjct: 298 KERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRA 352
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 108 (43.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQ 521
+++ L F+ GKV L ATDV G+ + S+VI ++LP Y+ GR AR NS
Sbjct: 285 REKALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSG 344
Query: 522 FILML 526
+ L
Sbjct: 345 LAVSL 349
Score = 88 (36.0 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 37/126 (29%), Positives = 57/126 (45%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLI--IFLAPTVHL---VHQQY 110
+ + + +A +TG GKT A + + Q I K + + L PT L VH+ +
Sbjct: 39 ILAKHDVMARAQTGTGKT--AAFALPILQQLISVQPCKPELRALVLTPTRELAQQVHKSF 96
Query: 111 DVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
TD + YG GV Q + ++ D+L+ TP LLD LR +SL +
Sbjct: 97 CHYGQFTDVTIGIAYG--GVST-KKQISELKVGV-DILIATPGRLLDLLRTESVSLSNIE 152
Query: 171 FIVIDE 176
+V DE
Sbjct: 153 TLVFDE 158
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 108 (43.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQ 521
+++ L F+ GKV L ATDV G+ + S+VI ++LP Y+ GR AR NS
Sbjct: 285 REKALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSG 344
Query: 522 FILML 526
+ L
Sbjct: 345 LAVSL 349
Score = 88 (36.0 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 37/126 (29%), Positives = 57/126 (45%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLI--IFLAPTVHL---VHQQY 110
+ + + +A +TG GKT A + + Q I K + + L PT L VH+ +
Sbjct: 39 ILAKHDVMARAQTGTGKT--AAFALPILQQLISVQPCKPELRALVLTPTRELAQQVHKSF 96
Query: 111 DVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
TD + YG GV Q + ++ D+L+ TP LLD LR +SL +
Sbjct: 97 CHYGQFTDVTIGIAYG--GVST-KKQISELKVGV-DILIATPGRLLDLLRTESVSLSNIE 152
Query: 171 FIVIDE 176
+V DE
Sbjct: 153 TLVFDE 158
>RGD|1307306 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box helicase 21"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0043330 "response
to exogenous dsRNA" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1307306 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:BC105878 IPI:IPI00198801
RefSeq:NP_001032278.1 UniGene:Rn.162310 ProteinModelPortal:Q3B8Q1
STRING:Q3B8Q1 PhosphoSite:Q3B8Q1 PRIDE:Q3B8Q1
Ensembl:ENSRNOT00000068184 GeneID:317399 KEGG:rno:317399
UCSC:RGD:1307306 NextBio:671745 Genevestigator:Q3B8Q1
Uniprot:Q3B8Q1
Length = 782
Score = 103 (41.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 460 PKVQKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
P+ Q+E+ L+ FR G +L AT+V G+ +P V++ PK V SYI GR
Sbjct: 468 PQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGR 523
Score = 100 (40.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 41/140 (29%), Positives = 65/140 (46%)
Query: 42 INFIPRIYQLKVFE-VAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAI--KSNGFKKLII 97
+NF+ I Q K F V ++ IA TG GKT A+ LI+ + + + G ++
Sbjct: 202 VNFLFPI-QAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVL 260
Query: 98 FLAPTVHLVHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
LAPT L +Q D + V +YG + Q ++ + D+LV TP +
Sbjct: 261 VLAPTRELANQVSKDFSDITKKLSVACFYGGT---PYGGQI-ERMRSGIDILVGTPGRIK 316
Query: 157 DALRKAFLSLDIVCFIVIDE 176
D L+ L L + +V+DE
Sbjct: 317 DHLQNGKLDLTKLKHVVLDE 336
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 122 (48.0 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 48/165 (29%), Positives = 72/165 (43%)
Query: 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFG 410
RQ+ + F EEV + G L D IFL G D + + ++ +L
Sbjct: 354 RQTLMFSATFPEEVQRLAGEFLK-TDYIFLVIGNTCGACSD---VQQNILQVPRLSKR-D 408
Query: 411 KSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEV-LES 469
K ++L ER + V+ KK +L ST S+ + ++E+ L
Sbjct: 409 KLIEILQSTGGERTMV--FVDT-KKKADYLAAFLCQENLPST-SIHGDREQREREIALRD 464
Query: 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
FR GK +L AT V G+ + N +VI FDLP T+ Y+ GR
Sbjct: 465 FRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGR 509
Score = 83 (34.3 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 36/126 (28%), Positives = 60/126 (47%)
Query: 60 RNTIAVLETGAGKTMIAVMLIKD--IAQAIKSNGFKKL----IIFLAPTVHLVHQQYDVI 113
R+ ++ +TG+GKT ++ I D + + ++ F+K I +APT L++Q +
Sbjct: 205 RDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEA 264
Query: 114 R--VH-TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
R V+ T YG Q Q ++L TP LLD + K +SL V
Sbjct: 265 RKFVYGTCIRPVVIYGGTQTGHSIRQIMQG----CNILCATPGRLLDIIEKGKISLVEVK 320
Query: 171 FIVIDE 176
++V+DE
Sbjct: 321 YLVLDE 326
Score = 38 (18.4 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 6 NSLKRSFGEVHSPNPPDMGSSGHDHA--VDGPSSSTNS 41
+S R F E +S N P M G + G S NS
Sbjct: 44 SSGSRDFQERNSANDPGMQDQGFRRVPGIFGQSKCFNS 81
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 121 (47.7 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 25/56 (44%), Positives = 31/56 (55%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
VL FR GK N+L ATDV G+ V YVI FD P+ YI GR + N++
Sbjct: 572 VLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTK 627
Score = 80 (33.2 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 33/136 (24%), Positives = 62/136 (45%)
Query: 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKTM--IAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
P Q + + +A N + + +TG+GKT+ I ++ Q G + + LAPT
Sbjct: 304 PTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPT 363
Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ-KEINKN-DVLVMTPQILLDALR 160
L Q + +V T+F Y V + Q +++ + ++++ TP L+D L
Sbjct: 364 RELAQQ---IQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLS 420
Query: 161 KAFLSLDIVCFIVIDE 176
+L ++V+DE
Sbjct: 421 AGSTNLKRCTYLVLDE 436
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 100 (40.3 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 30/98 (30%), Positives = 50/98 (51%)
Query: 418 IIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
+IF+E + AAK+V + K+ H A+ +G + ++ A ++LE F+ GK+
Sbjct: 247 LIFIETKHGAAKLVSQLEKRG---IHAE-AFHSGRSQAIRA-------QLLEDFKSGKIK 295
Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
L AT V G+ + S V+ +DLP Y+ GR
Sbjct: 296 YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGR 333
Score = 95 (38.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 33/123 (26%), Positives = 59/123 (47%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114
+ + R+ IA +TG GKT V+ +++ + Q + + L PT L Q + +
Sbjct: 35 ILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKVE 94
Query: 115 VH-TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIV 173
+ D ++ GVDE + Q+ I+ DVLV TP L+D + + + + +V
Sbjct: 95 QYGKDTGLKSLAVFGGVDEQAQK--QRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVV 152
Query: 174 IDE 176
+DE
Sbjct: 153 LDE 155
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 100 (40.3 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 30/98 (30%), Positives = 50/98 (51%)
Query: 418 IIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476
+IF+E + AAK+V + K+ H A+ +G + ++ A ++LE F+ GK+
Sbjct: 247 LIFIETKHGAAKLVSQLEKRG---IHAE-AFHSGRSQAIRA-------QLLEDFKSGKIK 295
Query: 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
L AT V G+ + S V+ +DLP Y+ GR
Sbjct: 296 YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGR 333
Score = 95 (38.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 33/123 (26%), Positives = 59/123 (47%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114
+ + R+ IA +TG GKT V+ +++ + Q + + L PT L Q + +
Sbjct: 35 ILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKVE 94
Query: 115 VH-TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIV 173
+ D ++ GVDE + Q+ I+ DVLV TP L+D + + + + +V
Sbjct: 95 QYGKDTGLKSLAVFGGVDEQAQK--QRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVV 152
Query: 174 IDE 176
+DE
Sbjct: 153 LDE 155
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 119 (46.9 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 435 KKVPFLTH-LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
+KV +LT + A T S+ D + K + EV++ FR G +L +TDV G+ VP
Sbjct: 276 RKVDWLTDKMKEANFTVSSMHGD-MEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQV 334
Query: 494 SYVIRFDLPKTVSSYIQSRGRA 515
S VI +DLP YI GR+
Sbjct: 335 SLVINYDLPNNRELYIHRIGRS 356
Score = 75 (31.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 31/129 (24%), Positives = 57/129 (44%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q V + K R+ IA ++G GKT A I + Q++ + + + L+PT L
Sbjct: 52 IQQRAVPAILKARDVIAQAQSGTGKT--ATFSIS-VLQSLDTQVRETQALILSPTRELAV 108
Query: 108 QQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
Q V+ D+ + + G + + ++ V+ TP + D +R+ L
Sbjct: 109 QIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQH-VVSGTPGRVFDMIRRRNLRTR 167
Query: 168 IVCFIVIDE 176
+ +V+DE
Sbjct: 168 AIKLLVLDE 176
>MGI|MGI:1860494 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 21"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008152 "metabolic process"
evidence=ISS] [GO:0009615 "response to virus" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043330
"response to exogenous dsRNA" evidence=IMP] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1860494 GO:GO:0005524 GO:GO:0005730 EMBL:CH466553
GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:AF220365
EMBL:AF159131 EMBL:AK160095 EMBL:BC043655 IPI:IPI00120691
RefSeq:NP_062426.2 UniGene:Mm.413275 ProteinModelPortal:Q9JIK5
SMR:Q9JIK5 DIP:DIP-48574N IntAct:Q9JIK5 STRING:Q9JIK5
PhosphoSite:Q9JIK5 PaxDb:Q9JIK5 PRIDE:Q9JIK5
Ensembl:ENSMUST00000045866 GeneID:56200 KEGG:mmu:56200
InParanoid:Q3TVJ3 NextBio:312026 Bgee:Q9JIK5 CleanEx:MM_DDX21
Genevestigator:Q9JIK5 GermOnline:ENSMUSG00000020075 Uniprot:Q9JIK5
Length = 851
Score = 103 (41.3 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 460 PKVQKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
P+ Q+E+ L+ FR G +L AT+V G+ +P V++ PK V SYI GR
Sbjct: 544 PQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGR 599
Score = 100 (40.3 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 41/140 (29%), Positives = 65/140 (46%)
Query: 42 INFIPRIYQLKVFE-VAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAI--KSNGFKKLII 97
+NF+ I Q K F V ++ IA TG GKT A+ LI+ + + + G ++
Sbjct: 278 VNFLFPI-QAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVL 336
Query: 98 FLAPTVHLVHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
LAPT L +Q D + V +YG + Q ++ + D+LV TP +
Sbjct: 337 VLAPTRELANQVSKDFSDITKKLSVACFYGGT---PYGGQI-ERMRSGIDILVGTPGRIK 392
Query: 157 DALRKAFLSLDIVCFIVIDE 176
D L+ L L + +V+DE
Sbjct: 393 DHLQNGKLDLTKLKHVVLDE 412
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 103 (41.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
L F+ G+V +L ATD+ G+ +P V+ F+LPK Y+ GR
Sbjct: 286 LADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGR 333
Score = 93 (37.8 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 54/225 (24%), Positives = 98/225 (43%)
Query: 46 PRIYQLKVFE-VAKRRNTIAVLETGAGKTM-IAVMLIKDIAQA--IKSNGFKKLIIFLAP 101
P QL+ V ++ +A +TG GKT + +++ +A+ +++N + LI L P
Sbjct: 24 PSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRALI--LTP 81
Query: 102 TVHLVHQQYDVIRV---HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158
T L Q D + + H + +G GV + + Q Q+ D+LV TP L+D
Sbjct: 82 TRELAAQIQDNVMLYGRHLPLKSAVVFG--GV-KINPQM-QRMCKGADILVATPGRLMDL 137
Query: 159 LRKAFLSLDIVCFIVIDECHHATGN---HPYTKIMKEFYHKSDNKPKVFGMTASPVVRKG 215
+ + D + +V+DE KI+K K N +F T S +R+
Sbjct: 138 YNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL--LFSATFSTEIREL 195
Query: 216 VSSAMD--CEGQISELEST---LDSQVFTIEDKTEMEVFVPSAKE 255
++ E +S ST ++ ++ + K + ++ V KE
Sbjct: 196 AKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 103 (41.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
L F+ G+V +L ATD+ G+ +P V+ F+LPK Y+ GR
Sbjct: 286 LADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGR 333
Score = 93 (37.8 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 54/225 (24%), Positives = 98/225 (43%)
Query: 46 PRIYQLKVFE-VAKRRNTIAVLETGAGKTM-IAVMLIKDIAQA--IKSNGFKKLIIFLAP 101
P QL+ V ++ +A +TG GKT + +++ +A+ +++N + LI L P
Sbjct: 24 PSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRALI--LTP 81
Query: 102 TVHLVHQQYDVIRV---HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158
T L Q D + + H + +G GV + + Q Q+ D+LV TP L+D
Sbjct: 82 TRELAAQIQDNVMLYGRHLPLKSAVVFG--GV-KINPQM-QRMCKGADILVATPGRLMDL 137
Query: 159 LRKAFLSLDIVCFIVIDECHHATGN---HPYTKIMKEFYHKSDNKPKVFGMTASPVVRKG 215
+ + D + +V+DE KI+K K N +F T S +R+
Sbjct: 138 YNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL--LFSATFSTEIREL 195
Query: 216 VSSAMD--CEGQISELEST---LDSQVFTIEDKTEMEVFVPSAKE 255
++ E +S ST ++ ++ + K + ++ V KE
Sbjct: 196 AKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 113 (44.8 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 36/131 (27%), Positives = 59/131 (45%)
Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLT 449
VD+ + KL +L++L + IIFVE K V+ + + A +
Sbjct: 380 VDVCDENEKLMKLIKLLTDISAENETKTIIFVE---TKKRVDEITRNISRQGWRACA-IH 435
Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
G + + + VL SFR G+ ++L ATDV G+ V + +VI +D P Y+
Sbjct: 436 GDKSQQE------RDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYV 489
Query: 510 QSRGRARQHNS 520
GR + N+
Sbjct: 490 HRIGRTGRSNN 500
Score = 89 (36.4 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 42/177 (23%), Positives = 78/177 (44%)
Query: 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVM--LIKDIAQAIKSNGFKKLIIFLAPT 102
P Q + + +A R+ + V +TG+GKT+ V+ ++ Q G + + LAPT
Sbjct: 180 PTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPT 239
Query: 103 VHLVHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALR 160
L Q Q I ++ V G + +++ + ++++ TP L+D L
Sbjct: 240 RELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQA---RDLERGVEIVIATPGRLIDFLE 296
Query: 161 KAFLSLDIVCFIVIDECHHAT--GNHPYT-KIMKEFYHKSDNKPKVFGMTASPVVRK 214
+ SL ++V+DE G P KIM++ + D + ++ T VR+
Sbjct: 297 RGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI--RPDRQVLMWSATWPKEVRQ 351
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 106 (42.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 43/133 (32%), Positives = 65/133 (48%)
Query: 50 QLKVF-EVAKRRNTIAVLETGAGKTM-IAVMLIKDIA---QAIKSNGFKKLIIFLAPTVH 104
Q+K F V + ++ IA TG GKT A+ LI+ + + IK + K+++ LAPT
Sbjct: 161 QVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLV-LAPTRE 219
Query: 105 LVHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
L +Q D + V +YG + SQ Q N D+LV TP + D L+
Sbjct: 220 LANQVAKDFKDITRKLSVACFYGGTS---YQSQINQIR-NGIDILVGTPGRIKDHLQSGR 275
Query: 164 LSLDIVCFIVIDE 176
L L + +V+DE
Sbjct: 276 LDLSKLRHVVLDE 288
Score = 95 (38.5 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 463 QKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
Q+E+ L+ FR G +L AT+V G+ +P VI+ P+ V SYI GR
Sbjct: 423 QREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGR 475
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 122 (48.0 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 48/165 (29%), Positives = 72/165 (43%)
Query: 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFG 410
RQ+ + F EEV + G L D IFL G D + + ++ +L
Sbjct: 354 RQTLMFSATFPEEVQRLAGEFLK-TDYIFLVIGNTCGACSD---VQQNILQVPRLSKR-D 408
Query: 411 KSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEV-LES 469
K ++L ER + V+ KK +L ST S+ + ++E+ L
Sbjct: 409 KLIEILQSTGGERTMV--FVDT-KKKADYLAAFLCQENLPST-SIHGDREQREREIALRD 464
Query: 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
FR GK +L AT V G+ + N +VI FDLP T+ Y+ GR
Sbjct: 465 FRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGR 509
Score = 83 (34.3 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 36/126 (28%), Positives = 60/126 (47%)
Query: 60 RNTIAVLETGAGKTMIAVMLIKD--IAQAIKSNGFKKL----IIFLAPTVHLVHQQYDVI 113
R+ ++ +TG+GKT ++ I D + + ++ F+K I +APT L++Q +
Sbjct: 205 RDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEA 264
Query: 114 R--VH-TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
R V+ T YG Q Q ++L TP LLD + K +SL V
Sbjct: 265 RKFVYGTCIRPVVIYGGTQTGHSIRQIMQG----CNILCATPGRLLDIIEKGKISLVEVK 320
Query: 171 FIVIDE 176
++V+DE
Sbjct: 321 YLVLDE 326
Score = 38 (18.4 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 6 NSLKRSFGEVHSPNPPDMGSSGHDHA--VDGPSSSTNS 41
+S R F E +S N P M G + G S NS
Sbjct: 44 SSGSRDFQERNSANDPGMQDQGFRRVPGIFGQSKCFNS 81
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 119 (46.9 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 435 KKVPFLTH-LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
+KV +LT + A T S+ D + K + EV++ FR G +L +TDV G+ VP
Sbjct: 276 RKVDWLTDKMKEANFTVSSMHGD-MEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQV 334
Query: 494 SYVIRFDLPKTVSSYIQSRGRA 515
S VI +DLP YI GR+
Sbjct: 335 SLVINYDLPNNRELYIHRIGRS 356
Score = 74 (31.1 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 30/129 (23%), Positives = 57/129 (44%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q + + K R+ IA ++G GKT A I + Q++ + + + L+PT L
Sbjct: 52 IQQRAIPAILKARDVIAQAQSGTGKT--ATFSIS-VLQSLDTQVRETQALILSPTRELAV 108
Query: 108 QQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
Q V+ D+ + + G + + ++ V+ TP + D +R+ L
Sbjct: 109 QIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQH-VVSGTPGRVFDMIRRRNLRTR 167
Query: 168 IVCFIVIDE 176
+ +V+DE
Sbjct: 168 AIKLLVLDE 176
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 115 (45.5 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 34/110 (30%), Positives = 51/110 (46%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525
VL F+ G V ++ ATDV G+ + + YV+ +D P T+ YI GR + + +
Sbjct: 671 VLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSY 730
Query: 526 LERSERSVTDTA-LSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVN 574
TD A L+ + +K T K K I E + SVT +S N
Sbjct: 731 ----SLLTTDNARLANE----LIKVLTEAKQKIPI-ELSNLSVTPSTSSN 771
Score = 86 (35.3 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 40/171 (23%), Positives = 76/171 (44%)
Query: 46 PRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVM--LIKDIAQAIKSNGFKKLIIFLAPT 102
P Q + + +A K R+ I + +TG+GKT+ ++ ++ AQ + +++ LAPT
Sbjct: 407 PTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPIVLVLAPT 466
Query: 103 VHLVHQ-QYDVIRVHTDFEVEE--YYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
L Q Q + + ++ YG +K + ++++ TP L+D L
Sbjct: 467 RELALQIQEETNKFGGTSQISNTCVYGGAS-KHTQVAALKKGV---EIVIATPGRLIDIL 522
Query: 160 RKAFLSLDIVCFIVIDECHHAT--GNHPYT-KIMKEFYHKSDNKPKVFGMT 207
+L V ++V+DE G P KI+ + + D + +F T
Sbjct: 523 ESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI--RPDRQTLMFSAT 571
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 107 (42.7 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+ SF+ GK ++L ATDV +G+ P+ +VI +D+P + +Y+ GR
Sbjct: 440 ISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGR 487
Score = 91 (37.1 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 46/174 (26%), Positives = 74/174 (42%)
Query: 60 RNTIAVLETGAGKT------MIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113
R+ I + TG+GKT MI + L +++ I + G + + + P+ L Q Y+V+
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAA-GEGPIGLIVCPSRELARQTYEVV 242
Query: 114 RVHTDFEVEEYY----GAKGVDEWDSQCWQKEINKNDV--LVMTPQILLDALRKAFLSLD 167
VE Y + D + Q E+ K V +V TP L D L K +SLD
Sbjct: 243 EQFVAPLVEAGYPPLRSLLCIGGIDMRS-QLEVVKRGVHIVVATPGRLKDMLAKKKMSLD 301
Query: 168 IVCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAM 220
++ +DE I + F H KS + +F T ++ SA+
Sbjct: 302 ACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSAL 355
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 127 (49.8 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 40/130 (30%), Positives = 63/130 (48%)
Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV---KKVPFL-THLTV 445
V +G + ++ Q L G+ ++ ++ + R I + FV KK F+ T L
Sbjct: 505 VAVGQVGGACRDVQQTILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQ 564
Query: 446 AYLTGSTTSVDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
+ STTS+ + ++E L FR GK +L AT V G+ + N +VI FDLP T
Sbjct: 565 EKI--STTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPST 622
Query: 505 VSSYIQSRGR 514
+ Y+ GR
Sbjct: 623 IDEYVHRIGR 632
Score = 82 (33.9 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 35/126 (27%), Positives = 58/126 (46%)
Query: 60 RNTIAVLETGAGKT--MIAVMLIKDIAQAIKSNGFKKL----IIFLAPTVHLVHQQYDVI 113
R+ +A +TG+GKT + +L + I ++ FK+L I +APT L++Q Y
Sbjct: 328 RDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEA 387
Query: 114 RVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
R T YG + Q + ++L TP L+D + K + L V
Sbjct: 388 RKFSFGTCVRAVVIYGGTQLGHSIRQI----VQGCNILCATPGRLMDVIGKEKIGLRQVK 443
Query: 171 FIVIDE 176
++V+DE
Sbjct: 444 YLVLDE 449
Score = 37 (18.1 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 24 GSSGHDHAVDGPSSSTNSI-NFIPRIYQLKVFEVAKRRNTIAVLETGAGKT 73
GSS DH + +S S+ N P E KR NT V G GK+
Sbjct: 49 GSSRRDHFMRSGFASGRSLGNRDPG-------ESNKRENTSTVGGFGVGKS 92
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 127 (49.8 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 40/130 (30%), Positives = 63/130 (48%)
Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV---KKVPFL-THLTV 445
V +G + ++ Q L G+ ++ ++ + R I + FV KK F+ T L
Sbjct: 505 VAVGQVGGACRDVQQTILQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQ 564
Query: 446 AYLTGSTTSVDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
+ STTS+ + ++E L FR GK +L AT V G+ + N +VI FDLP T
Sbjct: 565 EKI--STTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPST 622
Query: 505 VSSYIQSRGR 514
+ Y+ GR
Sbjct: 623 IDEYVHRIGR 632
Score = 82 (33.9 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 35/126 (27%), Positives = 58/126 (46%)
Query: 60 RNTIAVLETGAGKT--MIAVMLIKDIAQAIKSNGFKKL----IIFLAPTVHLVHQQYDVI 113
R+ +A +TG+GKT + +L + I ++ FK+L I +APT L++Q Y
Sbjct: 328 RDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEA 387
Query: 114 RVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
R T YG + Q + ++L TP L+D + K + L V
Sbjct: 388 RKFSFGTCVRAVVIYGGTQLGHSIRQI----VQGCNILCATPGRLMDVIGKEKIGLRQVK 443
Query: 171 FIVIDE 176
++V+DE
Sbjct: 444 YLVLDE 449
Score = 37 (18.1 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 24 GSSGHDHAVDGPSSSTNSI-NFIPRIYQLKVFEVAKRRNTIAVLETGAGKT 73
GSS DH + +S S+ N P E KR NT V G GK+
Sbjct: 49 GSSRRDHFMRSGFASGRSLGNRDPG-------ESNKRENTSTVGGFGVGKS 92
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 115 (45.5 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 40/143 (27%), Positives = 66/143 (46%)
Query: 394 YISTKLHELLQLFLSFGKSTQVLC--IIFVERIIAAKVV-ERFVKKVPFLTHLTVAYLTG 450
YI L + L + SF KS + C I+F+ V E F K P +++ +L G
Sbjct: 270 YIEVPLADKLDILFSFIKS-HLKCKMIVFLSSSKQVHFVYETFRKMQP---GISLMHLHG 325
Query: 451 STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510
+ + E L+ F + LFATDV+ G+ P +V++ D P+ V +YI
Sbjct: 326 RQKQ------RARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIH 379
Query: 511 SRGRARQHNSQ--FILMLERSER 531
GR ++ + ++ML E+
Sbjct: 380 RVGRCARYGKKGKSLIMLTPQEQ 402
Score = 85 (35.0 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 32/121 (26%), Positives = 63/121 (52%)
Query: 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL-IIFLAPTVHLVHQQYDVI-RV--H 116
+ +A +TG+GKT+ ++ + + K F L + ++PT L Q Y+V+ ++ H
Sbjct: 80 DVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSH 139
Query: 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF-LSLDIVCFIVID 175
T F G K V +++ + I++ ++L+ TP +L L +A L+ + +V+D
Sbjct: 140 TSFSAGLVIGGKDV-KFELE----RISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLD 194
Query: 176 E 176
E
Sbjct: 195 E 195
>POMBASE|SPAC22F3.08c [details] [associations]
symbol:rok1 "ATP-dependent RNA helicase Rok1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC22F3.08c GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000242486 KO:K14779
PIR:T38183 RefSeq:NP_593033.1 ProteinModelPortal:Q09775
STRING:Q09775 EnsemblFungi:SPAC22F3.08c.1 GeneID:2541786
KEGG:spo:SPAC22F3.08c OMA:ERESINT OrthoDB:EOG425926
NextBio:20802875 Uniprot:Q09775
Length = 481
Score = 102 (41.0 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
++E L FR G++ +L ATD++ G+ VI FD P++V SYI GR
Sbjct: 327 REEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGR 378
Score = 93 (37.8 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 33/124 (26%), Positives = 62/124 (50%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL---VHQQYDV 112
+ +R+ +A TG+GKT+ + I Q G++ +I+ APT L +++Q +
Sbjct: 80 IGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIV--APTRELCEQIYRQAEK 137
Query: 113 IRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFI 172
+ T ++ E +K ++ + K K D+ + TP L+ A++ LS + V F
Sbjct: 138 LSFGTSLKIIEL--SKSNEKIQEKA-PKLREKYDMCIGTPMRLVQAIQTG-LSFEKVEFF 193
Query: 173 VIDE 176
V+DE
Sbjct: 194 VMDE 197
>UNIPROTKB|E2QTL6 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003725 "double-stranded
RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0009615
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0043330 InterPro:IPR014014 PROSITE:PS51195
CTD:9188 RefSeq:XP_851746.2 ProteinModelPortal:E2QTL6
Ensembl:ENSCAFT00000021901 GeneID:476891 KEGG:cfa:476891
NextBio:20852481 Uniprot:E2QTL6
Length = 785
Score = 106 (42.4 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 460 PKVQKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
P+ Q+E+ L+ FR G +L AT+V G+ +P VI+ PK V SYI GR
Sbjct: 474 PQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGR 529
Score = 94 (38.1 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 39/132 (29%), Positives = 59/132 (44%)
Query: 50 QLKVF-EVAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAI--KSNGFKKLIIFLAPTVHL 105
Q K F V ++ IA TG GKT A+ LI + + + G ++ LAPT L
Sbjct: 215 QAKTFYHVYSGKDLIAQARTGTGKTFSFAIPLIVKLQGELQDRKRGRAPQVLVLAPTREL 274
Query: 106 VHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
+Q D + V +YG + Q ++ N D+LV TP + D L+ L
Sbjct: 275 ANQVSRDFSDITRKLAVACFYGGT---PYGGQI-ERMRNGIDILVGTPGRIKDHLQNGKL 330
Query: 165 SLDIVCFIVIDE 176
L + +V+DE
Sbjct: 331 DLTKLKHVVLDE 342
>UNIPROTKB|F6V8G4 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:QCEPPRE EMBL:AAEX03002786
Ensembl:ENSCAFT00000021901 Uniprot:F6V8G4
Length = 786
Score = 106 (42.4 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 460 PKVQKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
P+ Q+E+ L+ FR G +L AT+V G+ +P VI+ PK V SYI GR
Sbjct: 474 PQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGR 529
Score = 94 (38.1 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 39/132 (29%), Positives = 59/132 (44%)
Query: 50 QLKVF-EVAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAI--KSNGFKKLIIFLAPTVHL 105
Q K F V ++ IA TG GKT A+ LI + + + G ++ LAPT L
Sbjct: 215 QAKTFYHVYSGKDLIAQARTGTGKTFSFAIPLIVKLQGELQDRKRGRAPQVLVLAPTREL 274
Query: 106 VHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
+Q D + V +YG + Q ++ N D+LV TP + D L+ L
Sbjct: 275 ANQVSRDFSDITRKLAVACFYGGT---PYGGQI-ERMRNGIDILVGTPGRIKDHLQNGKL 330
Query: 165 SLDIVCFIVIDE 176
L + +V+DE
Sbjct: 331 DLTKLKHVVLDE 342
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 120 (47.3 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 41/136 (30%), Positives = 64/136 (47%)
Query: 402 LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA-LTP 460
LL L + GK + L ++FVE A +E FL H Y + TS+ +
Sbjct: 409 LLDLLNATGKDS--LTLVFVETKKGADALE------DFLYH--EGY---ACTSIHGDRSQ 455
Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
+ ++E L FR GK +L AT V G+ + N +VI FDLP + Y+ GR + +
Sbjct: 456 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 515
Query: 521 QFILMLERSERSVTDT 536
+ +ER++ T
Sbjct: 516 LGLATSFFNERNINIT 531
Score = 77 (32.2 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 37/140 (26%), Positives = 66/140 (47%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVMLIK---------DIAQAIKSNGF---KK---LIIFLA 100
+ ++R+ +A +TG+GKT ++ I D +A+K NG +K + + LA
Sbjct: 192 IKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKENGRYGRRKQYPISLVLA 251
Query: 101 PTVHLVHQQYDVIRVHT-DFEVEE--YYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILL 156
PT L Q Y+ R V YG + + Q +++ + +LV TP L+
Sbjct: 252 PTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQ---QI--RDLERGCHLLVATPGRLV 306
Query: 157 DALRKAFLSLDIVCFIVIDE 176
D + + + LD ++V+DE
Sbjct: 307 DMMERGKIGLDFCKYLVLDE 326
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 119 (46.9 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 451 STTSVDA-LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
+ TS+ T + VL+ FR GK N+L ATDV G+ V + YVI +D P + +Y+
Sbjct: 517 NATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYV 576
Query: 510 QSRGR 514
GR
Sbjct: 577 HRIGR 581
Score = 82 (33.9 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 34/138 (24%), Positives = 66/138 (47%)
Query: 46 PRIYQLKVFEVA-KRRNTIAVLETGAGKTMI----AVMLIKDIAQAIKSNGFKKLIIFLA 100
P Q + + +A R+ + + +TG+GKT+ A++ I + I+ G + + LA
Sbjct: 260 PTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRGEG--PIALVLA 317
Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ-KEINKN-DVLVMTPQILLDA 158
PT L Q V+R + E + S+ Q +++++ +V++ TP L+D
Sbjct: 318 PTRELAQQIQSVVRDYGHLCKPEIRHTC-IFGGSSKVPQARDLDRGVEVIIATPGRLIDF 376
Query: 159 LRKAFLSLDIVCFIVIDE 176
L +L ++V+DE
Sbjct: 377 LENRNTNLQRCTYLVLDE 394
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 112 (44.5 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 39/130 (30%), Positives = 59/130 (45%)
Query: 385 DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT 444
D +K L T+ LLQ FL KS Q+ IIF +R K + +L
Sbjct: 219 DIAKRFYLADNLTQKEALLQHFLVTEKSQQI--IIFTA---TRSDTDRLAKLLTE-QNLN 272
Query: 445 VAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
L+G L + +++ESF G+ +L TD+ G+ + N S+VI FD+PK
Sbjct: 273 AVALSGE------LNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKH 326
Query: 505 VSSYIQSRGR 514
++ GR
Sbjct: 327 TEEFVHRIGR 336
Score = 81 (33.6 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 37/155 (23%), Positives = 66/155 (42%)
Query: 29 DHAVDGPSSST---NSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ 85
D +D ST N +I Q + + IA +TG+GKT+ +I + +
Sbjct: 5 DFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTL--AFIIPALQR 62
Query: 86 AIKSNGFKKL---IIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEI 142
K+ K ++ L PT L Q + +R+ T + G + ++ Q K +
Sbjct: 63 LSKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQV--KVL 120
Query: 143 NKN-DVLVMTPQILLDALRKAFLSLDIVCFIVIDE 176
K + +V TP L D L + L+ + +++DE
Sbjct: 121 QKEPEFIVATPGRLADHLTQGHFHLNGLELLILDE 155
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 112 (44.5 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 39/130 (30%), Positives = 59/130 (45%)
Query: 385 DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT 444
D +K L T+ LLQ FL KS Q+ IIF +R K + +L
Sbjct: 219 DIAKRFYLADNLTQKEALLQHFLVTEKSQQI--IIFTA---TRSDTDRLAKLLTE-QNLN 272
Query: 445 VAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
L+G L + +++ESF G+ +L TD+ G+ + N S+VI FD+PK
Sbjct: 273 AVALSGE------LNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKH 326
Query: 505 VSSYIQSRGR 514
++ GR
Sbjct: 327 TEEFVHRIGR 336
Score = 81 (33.6 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 37/155 (23%), Positives = 66/155 (42%)
Query: 29 DHAVDGPSSST---NSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQ 85
D +D ST N +I Q + + IA +TG+GKT+ +I + +
Sbjct: 5 DFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTL--AFIIPALQR 62
Query: 86 AIKSNGFKKL---IIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEI 142
K+ K ++ L PT L Q + +R+ T + G + ++ Q K +
Sbjct: 63 LSKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQV--KVL 120
Query: 143 NKN-DVLVMTPQILLDALRKAFLSLDIVCFIVIDE 176
K + +V TP L D L + L+ + +++DE
Sbjct: 121 QKEPEFIVATPGRLADHLTQGHFHLNGLELLILDE 155
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 119 (46.9 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNSQ 521
+++ LE+F+ G+V +L ATD+ G+HV ++VI +DLP ++ GR AR NS
Sbjct: 289 REKALEAFKAGRVPILVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSG 348
Query: 522 F-ILMLERSER 531
I R ER
Sbjct: 349 VAISFCSRDER 359
Score = 74 (31.1 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 31/126 (24%), Positives = 57/126 (45%)
Query: 56 VAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKL-IIFLAPTVHLVHQ---QY 110
V + R+ + + +TG GKT+ A ++ +++ + ++ LAPT L Q +
Sbjct: 41 VIQGRDIVGLAQTGTGKTLAFAAPILDRLSRNASPAPVRGTRVLVLAPTRELAGQIATSF 100
Query: 111 DVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
+ V G + Q Q E + +LV TP L+D + + +SLD V
Sbjct: 101 GTYGAGLNLRVVMVCGGAKIG---GQIRQLERGAH-ILVATPGRLIDLMEQRAVSLDKVE 156
Query: 171 FIVIDE 176
+++DE
Sbjct: 157 TLILDE 162
>UNIPROTKB|A4FV23 [details] [associations]
symbol:DDX21 "DDX21 protein" species:9913 "Bos taurus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:DAAA02061828
EMBL:BC123648 IPI:IPI00694353 RefSeq:NP_001076996.1
UniGene:Bt.92068 Ensembl:ENSBTAT00000019351 GeneID:781917
KEGG:bta:781917 InParanoid:A4FV23 NextBio:20925123 Uniprot:A4FV23
Length = 784
Score = 105 (42.0 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 460 PKVQKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
P+ Q+E+ L+ FR G +L AT+V G+ +P V++ PK V SYI GR
Sbjct: 473 PQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGR 528
Score = 94 (38.1 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 38/132 (28%), Positives = 59/132 (44%)
Query: 50 QLKVFE-VAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAI--KSNGFKKLIIFLAPTVHL 105
Q K F V ++ IA TG GKT A+ L++ + + + G ++ LAPT L
Sbjct: 214 QAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEKLLGELQDRKRGRAPQVLVLAPTREL 273
Query: 106 VHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
Q D + V +YG + Q ++ N D+LV TP + D L+ L
Sbjct: 274 ASQVSRDFSDITKKLAVACFYGGT---PYGGQI-ERMKNGIDILVGTPGRIKDHLQNGKL 329
Query: 165 SLDIVCFIVIDE 176
L + +V+DE
Sbjct: 330 DLTKLKHVVLDE 341
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 123 (48.4 bits), Expect = 6.7e-06, Sum P(3) = 6.7e-06
Identities = 40/130 (30%), Positives = 63/130 (48%)
Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV---KKVPFL-THLTV 445
V +G + ++ Q L G+ ++ ++ + R I + FV KK F+ T L
Sbjct: 501 VAVGQVGGACRDVQQADLQVGQYSKREKLLEILRNIGDERTMVFVETKKKADFIATFLCQ 560
Query: 446 AYLTGSTTSVDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
+ STTS+ + ++E L FR GK +L AT V G+ + N +VI FDLP T
Sbjct: 561 EKI--STTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPST 618
Query: 505 VSSYIQSRGR 514
+ Y+ GR
Sbjct: 619 IDEYVHRIGR 628
Score = 81 (33.6 bits), Expect = 6.7e-06, Sum P(3) = 6.7e-06
Identities = 35/126 (27%), Positives = 58/126 (46%)
Query: 60 RNTIAVLETGAGKT--MIAVMLIKDIAQAIKSNGFKKL----IIFLAPTVHLVHQQYDVI 113
R+ +A +TG+GKT + +L + I ++ FK+L I +APT LV+Q Y
Sbjct: 324 RDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEA 383
Query: 114 RVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
R T YG + Q + ++L TP L+D + K + L +
Sbjct: 384 RKFSFGTCVRAVVIYGGTQLGHSIRQI----VQGCNILCATPGRLMDIIGKEKIGLKQIK 439
Query: 171 FIVIDE 176
++V+DE
Sbjct: 440 YLVLDE 445
Score = 40 (19.1 bits), Expect = 6.7e-06, Sum P(3) = 6.7e-06
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 17 SPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKT 73
S + D G SG DH + S T+ ++ R E KR NT G GK+
Sbjct: 40 SSSEMDDGPSGRDHFMK--SGFTSGRSYGKR----DAGESNKRENTSTTGGFGVGKS 90
>TIGR_CMR|NSE_0918 [details] [associations]
symbol:NSE_0918 "ribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0004525 "ribonuclease
III activity" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_506782.1
ProteinModelPortal:Q2GCL4 STRING:Q2GCL4 GeneID:3931585
KEGG:nse:NSE_0918 PATRIC:22681823 ProtClustDB:CLSK2528151
BioCyc:NSEN222891:GHFU-920-MONOMER Uniprot:Q2GCL4
Length = 222
Score = 129 (50.5 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 1047 LILEALT--TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1104
L++EALT ++ C S+ ERLE LGD+VL ++ L+ +P EG+LS R+S +C
Sbjct: 19 LLVEALTHPSVEKCPSY--ERLEFLGDAVLNLVIASMLYDLFPGDPEGRLSHRQSALICK 76
Query: 1105 STLHKLGTDRKLQGYIRDSA 1124
+TL L L YIR S+
Sbjct: 77 NTLAMLARQMNLGDYIRLSS 96
Score = 48 (22.0 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 1180 SKTIADCAEALIGAYYVGGGL--IAALYMMKWLGI 1212
+ + + EAL+GA ++ GL + +W G+
Sbjct: 107 TSNLENVLEALVGAIFLDAGLETVTCFIKKRWYGL 141
Score = 44 (20.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 1305 DSGPSMKAPKALGDLLESIVGAVLIDTKL 1333
++G L ++LE++VGA+ +D L
Sbjct: 99 EAGGGRDKTSNLENVLEALVGAIFLDAGL 127
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 119 (46.9 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 447 YLTGSTTSVDALTPKV-QKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
+L V LT V QK+ +LE F G V++L ATDV G+H+P+ ++V +DLP
Sbjct: 272 HLNADKIRVGLLTGDVPQKKRLKILEEFTDGTVDILVATDVAARGLHIPSVTHVFNYDLP 331
Query: 503 KTVSSYIQSRGR 514
Y+ GR
Sbjct: 332 DDCQDYVHRIGR 343
Score = 72 (30.4 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 29/115 (25%), Positives = 56/115 (48%)
Query: 67 ETGAGKTM--IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL---VHQQYDVIRVHTDFEV 121
+TG GKT+ +A + + ++ + +I +APT L +H+ + T +
Sbjct: 54 QTGEGKTIAFLAATFHHLLQKEAPTHNQPRALI-MAPTRELAIQIHRDATEMAKSTGLRL 112
Query: 122 EEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDE 176
YG +G ++SQ + E D+L+ T L+D +++ +L + IV+DE
Sbjct: 113 GVVYGGEG---YESQRLELEAGV-DILIGTCGRLIDYMKQGIYNLKNIEVIVLDE 163
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 116 (45.9 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 39/130 (30%), Positives = 61/130 (46%)
Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV---KKVPFL-THLTV 445
V +G + ++ Q L G + ++ + R I + FV KK F+ T L
Sbjct: 488 VAVGQVGGACRDVQQSILQVGPVFKKRKLVEILRNIGDERPMVFVETKKKADFIATFLCQ 547
Query: 446 AYLTGSTTSVDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
+ STTS+ + ++E L FR GK +L AT V G+ + N +VI F+LP T
Sbjct: 548 EKI--STTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPST 605
Query: 505 VSSYIQSRGR 514
+ Y+ GR
Sbjct: 606 IDEYVHRIGR 615
Score = 81 (33.6 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 33/123 (26%), Positives = 58/123 (47%)
Query: 60 RNTIAVLETGAGKT--MIAVMLIKDIAQAIKSNGFKKL----IIFLAPTVHLVHQQYDVI 113
R+ +A +TG+GKT + +L + I ++ FK+L I +APT L++Q Y
Sbjct: 311 RDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEA 370
Query: 114 RVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIV 173
R + G ++ Q + ++L TP L+D + K + L V ++V
Sbjct: 371 RKFSFGTCVRAVVIYGGTQFGHSIRQI-VQGCNILCATPGRLMDIIGKEKIGLKQVKYLV 429
Query: 174 IDE 176
+DE
Sbjct: 430 LDE 432
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 116 (45.9 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 39/130 (30%), Positives = 61/130 (46%)
Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV---KKVPFL-THLTV 445
V +G + ++ Q L G + ++ + R I + FV KK F+ T L
Sbjct: 488 VAVGQVGGACRDVQQSILQVGPVFKKRKLVEILRNIGDERPMVFVETKKKADFIATFLCQ 547
Query: 446 AYLTGSTTSVDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
+ STTS+ + ++E L FR GK +L AT V G+ + N +VI F+LP T
Sbjct: 548 EKI--STTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPST 605
Query: 505 VSSYIQSRGR 514
+ Y+ GR
Sbjct: 606 IDEYVHRIGR 615
Score = 81 (33.6 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 33/123 (26%), Positives = 58/123 (47%)
Query: 60 RNTIAVLETGAGKT--MIAVMLIKDIAQAIKSNGFKKL----IIFLAPTVHLVHQQYDVI 113
R+ +A +TG+GKT + +L + I ++ FK+L I +APT L++Q Y
Sbjct: 311 RDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEA 370
Query: 114 RVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIV 173
R + G ++ Q + ++L TP L+D + K + L V ++V
Sbjct: 371 RKFSFGTCVRAVVIYGGTQFGHSIRQI-VQGCNILCATPGRLMDIIGKEKIGLKQVKYLV 429
Query: 174 IDE 176
+DE
Sbjct: 430 LDE 432
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 121 (47.7 bits), Expect = 8.1e-06, Sum P(3) = 8.1e-06
Identities = 45/145 (31%), Positives = 68/145 (46%)
Query: 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
S K LL L + GK + L ++FVE A +E FL H Y + TS+
Sbjct: 426 SDKRSFLLDLLNATGKDS--LTLVFVETKKGADSLE------DFLYH--EGY---ACTSI 472
Query: 456 DA-LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+ + ++E L FR GK +L AT V G+ + N +VI FDLP + Y+ GR
Sbjct: 473 HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 532
Query: 515 ARQHNSQFILMLERS---ERSVTDT 536
+ + ++ L S ER++ T
Sbjct: 533 TGRVGNLGLIGLATSFFNERNINIT 557
Score = 77 (32.2 bits), Expect = 8.1e-06, Sum P(3) = 8.1e-06
Identities = 36/140 (25%), Positives = 68/140 (48%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVM-LIKDI--------AQAIKSNGF---KK---LIIFLA 100
+ ++R+ +A +TG+GKT ++ ++ I +A+K NG +K + + LA
Sbjct: 215 IKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLA 274
Query: 101 PTVHLVHQQYDVIRVHT-DFEVEE--YYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILL 156
PT L Q Y+ R + V YG + + Q +++ + +LV TP L+
Sbjct: 275 PTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQ---QI--RDLERGCHLLVATPGRLV 329
Query: 157 DALRKAFLSLDIVCFIVIDE 176
D + + + LD ++V+DE
Sbjct: 330 DMMERGKIGLDFCKYLVLDE 349
Score = 44 (20.5 bits), Expect = 8.1e-06, Sum P(3) = 8.1e-06
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 760 HLDADQMSKAKCFQELFFNGLFG-KLFVKSKSSGSREFFLKRETNS 804
H ++K + F+G FG + + +S SSGS F R +S
Sbjct: 583 HYKGSSRGRSKSYNR--FSGGFGARDYRQSSSSGSSTFSSSRAGSS 626
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 112 (44.5 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNS 520
+ +E+FR GK ++L ATDV +G+ P +VI +D+P+ + +Y+ GR R N+
Sbjct: 469 KAIEAFRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT 525
Score = 83 (34.3 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 44/178 (24%), Positives = 72/178 (40%)
Query: 60 RNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFKKLI----IFLAPTVHLVHQQYDVIR 114
R+ I + TG+GKT++ + +I + K F K + + P+ L Q + +I
Sbjct: 215 RDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIE 274
Query: 115 VHTDFEVEEYY---------GAKGVDEWDSQCWQKEINKNDV--LVMTPQILLDALRKAF 163
+ E+ G V E Q E K+ V +V TP L+D L+K
Sbjct: 275 YYCRLLQEDSLPPLRCALCIGGMSVKE------QMETIKHGVHMMVATPGRLMDLLQKKM 328
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAM 220
+SLDI ++ +DE I F Y K + +F T ++ SA+
Sbjct: 329 VSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL 386
>UNIPROTKB|F1RZ83 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
Uniprot:F1RZ83
Length = 411
Score = 117 (46.2 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 33/105 (31%), Positives = 53/105 (50%)
Query: 416 LCIIFVERIIAAKVVERFVK-KVPFLTH-LTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473
LC ++ I V+ K KV +LT + A T S+ D + K ++ +++ FR G
Sbjct: 268 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD-MPQKERESIMKEFRSG 326
Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518
+L +TDV G+ VP S +I +DLP YI GR+ ++
Sbjct: 327 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 371
Score = 73 (30.8 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 29/127 (22%), Positives = 53/127 (41%)
Query: 50 QLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109
Q K+ V K N + + ++G GKT A I + Q + + + LAPT L Q
Sbjct: 66 QRKILVVMKSNNAVVISQSGTGKT--ATFSIS-VLQCLDIQVRETQALILAPTRELAVQI 122
Query: 110 YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIV 169
+ D+ + + G + + ++ V+ TP + D +R+ L +
Sbjct: 123 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH-VVAGTPGRVFDMIRRRSLRTRAI 181
Query: 170 CFIVIDE 176
+V+DE
Sbjct: 182 KMLVLDE 188
>UNIPROTKB|F1LX16 [details] [associations]
symbol:F1LX16 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00949361
Ensembl:ENSRNOT00000004240 Uniprot:F1LX16
Length = 659
Score = 100 (40.3 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 41/140 (29%), Positives = 65/140 (46%)
Query: 42 INFIPRIYQLKVFE-VAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAI--KSNGFKKLII 97
+NF+ I Q K F V ++ IA TG GKT A+ LI+ + + + G ++
Sbjct: 86 VNFLFPI-QAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVL 144
Query: 98 FLAPTVHLVHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL 156
LAPT L +Q D + V +YG + Q ++ + D+LV TP +
Sbjct: 145 VLAPTRELANQVSKDFSDITKKLSVACFYGGT---PYGGQI-ERMRSGIDILVGTPGRIK 200
Query: 157 DALRKAFLSLDIVCFIVIDE 176
D L+ L L + +V+DE
Sbjct: 201 DHLQNGKLDLTKLKHVVLDE 220
Score = 96 (38.9 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 460 PKVQKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
P+ Q+E+ L+ FR +L AT+V G+ +P V++ PK V SYI GR
Sbjct: 352 PQKQREITLKGFRNDNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGR 407
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 118 (46.6 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 34/120 (28%), Positives = 55/120 (45%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA 457
K+H+ + L +LC + + + +V FVK ++ L L
Sbjct: 218 KIHQWIHLADDKDHKFALLCHLLKQEDVKRAIV--FVKTRDVVSSLEGQLLQAGIPCAFM 275
Query: 458 LTPKVQK---EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
QK + L F G+VN+L ATDV G+ + + S+VI FD+P++ +YI GR
Sbjct: 276 RGDMEQKKRFQALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGR 335
Score = 72 (30.4 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 36/125 (28%), Positives = 60/125 (48%)
Query: 58 KRRNTIAVLETGAGKTMIAVMLIKDIAQAI----KSNGFKKLIIFLAPTVHLVHQQYD-V 112
++R+ +A TG GKT A L+ + I + +G +++I L PT L Q +
Sbjct: 37 EQRDILARAPTGTGKT--ASFLLPALQHLIDFPRRYSGQARVLI-LTPTRELASQIHRYA 93
Query: 113 IRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCF 171
+ TD + GV + Q ++ + N D+LV TP L++ L K S + V
Sbjct: 94 CHLATDQGLNIAIITGGVP-YAPQ--EEALKGNIDILVATPGRLMEYLDKGKFSAESVDI 150
Query: 172 IVIDE 176
++IDE
Sbjct: 151 LIIDE 155
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 118 (46.6 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 34/120 (28%), Positives = 55/120 (45%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA 457
K+H+ + L +LC + + + +V FVK ++ L L
Sbjct: 218 KIHQWIHLADDKDHKFALLCHLLKQEDVKRAIV--FVKTRDVVSSLEGQLLQAGIPCAFM 275
Query: 458 LTPKVQK---EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
QK + L F G+VN+L ATDV G+ + + S+VI FD+P++ +YI GR
Sbjct: 276 RGDMEQKKRFQALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGR 335
Score = 72 (30.4 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 36/125 (28%), Positives = 60/125 (48%)
Query: 58 KRRNTIAVLETGAGKTMIAVMLIKDIAQAI----KSNGFKKLIIFLAPTVHLVHQQYD-V 112
++R+ +A TG GKT A L+ + I + +G +++I L PT L Q +
Sbjct: 37 EQRDILARAPTGTGKT--ASFLLPALQHLIDFPRRYSGQARVLI-LTPTRELASQIHRYA 93
Query: 113 IRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCF 171
+ TD + GV + Q ++ + N D+LV TP L++ L K S + V
Sbjct: 94 CHLATDQGLNIAIITGGVP-YAPQ--EEALKGNIDILVATPGRLMEYLDKGKFSAESVDI 150
Query: 172 IVIDE 176
++IDE
Sbjct: 151 LIIDE 155
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 97 (39.2 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
VL+ F+ GK ++ ATDV G+ V N ++V+ +D P YI GR
Sbjct: 416 VLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGR 464
Score = 97 (39.2 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 53/227 (23%), Positives = 99/227 (43%)
Query: 60 RNTIAVLETGAGKTMIAVM--LIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ-QYDVIRVH 116
R+ + + ETG+GKT+ + ++ AQ + + G +++ LAPT L Q Q ++ +
Sbjct: 163 RDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFG 222
Query: 117 TDFEVEE--YYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCFIV 173
+ YG GV + Q +++++ +V + TP L+D L +L V ++V
Sbjct: 223 KSSRIRNTCVYG--GVPK-GPQI--RDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLV 277
Query: 174 IDECHHAT--GNHPYT-KIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMD--CEGQISE 228
+DE G P KI+ + + D + ++ T VR + + + I
Sbjct: 278 LDEADRMLDMGFEPQIRKIIGQI--RPDRQTLMWSATWPKEVRNMAADFLQDFIQVNIGS 335
Query: 229 LESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFC-GSDLKGKL 274
L+ + + ++ I +EV S K K G D K K+
Sbjct: 336 LDLSANHRITQI-----VEVVSESEKRDRMIRHMEKVMDGKDSKNKI 377
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 107 (42.7 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN-- 519
++++ LE + G++++L ATDV G+ V S V+ +D+P SY+ GR +
Sbjct: 283 LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 342
Query: 520 SQFILMLERSER 531
+ +L +E ER
Sbjct: 343 GRALLFVENRER 354
Score = 88 (36.0 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 34/122 (27%), Positives = 60/122 (49%)
Query: 60 RNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118
R+ + + +TG+GKT ++ L++++ +K+ I+ LAPT L Q V TD
Sbjct: 44 RDVLGMAQTGSGKTAAFSLPLLQNLDPELKA----PQILVLAPTRELAVQ---VAEAMTD 96
Query: 119 FEVEEYYGAKGVDEWDSQCWQKEINK----NDVLVMTPQILLDALRKAFLSLDIVCFIVI 174
F + G V + Q + ++ ++V TP LLD L++ L L + +V+
Sbjct: 97 FS-KHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155
Query: 175 DE 176
DE
Sbjct: 156 DE 157
>UNIPROTKB|E2RPT4 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
Length = 687
Score = 101 (40.6 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 43/137 (31%), Positives = 67/137 (48%)
Query: 50 QLKVF-EVAKRRNTIAVLETGAGKTM-IAVMLIKDIA---QAIKSNGFKKLIIFLAPTVH 104
Q+K F V + ++ IA TG GKT A+ LI+ + + IK + K+++ LAPT
Sbjct: 166 QVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLV-LAPTRE 224
Query: 105 LVHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEIN--KN--DVLVMTPQILLDAL 159
L +Q D + V +YG +Q +IN +N D+LV TP + D L
Sbjct: 225 LANQVAKDFKDITRKLSVACFYGGTS--------YQSQINHIRNGIDILVGTPGRIKDHL 276
Query: 160 RKAFLSLDIVCFIVIDE 176
+ L L + +V+DE
Sbjct: 277 QSGRLDLSKLRHVVLDE 293
Score = 95 (38.5 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 463 QKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
Q+E+ L+ FR G +L AT+V G+ +P VI+ P+ V SYI GR
Sbjct: 428 QREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGR 480
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 120 (47.3 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 43/142 (30%), Positives = 66/142 (46%)
Query: 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
S K LL L + GK + L ++FVE A +E FL H Y + TS+
Sbjct: 424 SDKRSFLLDLLNATGKDS--LTLVFVETKKGADSLE------DFLYH--EGY---ACTSI 470
Query: 456 DA-LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+ + ++E L FR GK +L AT V G+ + N +VI FDLP + Y+ GR
Sbjct: 471 HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 530
Query: 515 ARQHNSQFILMLERSERSVTDT 536
+ + + +ER++ T
Sbjct: 531 TGRVGNLGLATSFFNERNINIT 552
Score = 75 (31.5 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 36/140 (25%), Positives = 68/140 (48%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVM-LIKDI--------AQAIKSNGF---KK---LIIFLA 100
+ ++R+ +A +TG+GKT ++ ++ I +A+K NG +K + + LA
Sbjct: 213 IKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLA 272
Query: 101 PTVHLVHQQYDVIRVHT-DFEVEE--YYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILL 156
PT L Q Y+ R + V YG + + Q +++ + +LV TP L+
Sbjct: 273 PTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQ---QI--RDLERGCHLLVATPGRLV 327
Query: 157 DALRKAFLSLDIVCFIVIDE 176
D + + + LD ++V+DE
Sbjct: 328 DMMERGKIGLDFCKYLVLDE 347
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 120 (47.3 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 43/142 (30%), Positives = 66/142 (46%)
Query: 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
S K LL L + GK + L ++FVE A +E FL H Y + TS+
Sbjct: 425 SDKRSFLLDLLNATGKDS--LTLVFVETKKGADSLE------DFLYH--EGY---ACTSI 471
Query: 456 DA-LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+ + ++E L FR GK +L AT V G+ + N +VI FDLP + Y+ GR
Sbjct: 472 HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 531
Query: 515 ARQHNSQFILMLERSERSVTDT 536
+ + + +ER++ T
Sbjct: 532 TGRVGNLGLATSFFNERNINIT 553
Score = 75 (31.5 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 36/140 (25%), Positives = 68/140 (48%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVM-LIKDI--------AQAIKSNGF---KK---LIIFLA 100
+ ++R+ +A +TG+GKT ++ ++ I +A+K NG +K + + LA
Sbjct: 214 IKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLA 273
Query: 101 PTVHLVHQQYDVIRVHT-DFEVEE--YYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILL 156
PT L Q Y+ R + V YG + + Q +++ + +LV TP L+
Sbjct: 274 PTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQ---QI--RDLERGCHLLVATPGRLV 328
Query: 157 DALRKAFLSLDIVCFIVIDE 176
D + + + LD ++V+DE
Sbjct: 329 DMMERGKIGLDFCKYLVLDE 348
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 120 (47.3 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 43/142 (30%), Positives = 66/142 (46%)
Query: 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
S K LL L + GK + L ++FVE A +E FL H Y + TS+
Sbjct: 425 SDKRSFLLDLLNATGKDS--LTLVFVETKKGADSLE------DFLYH--EGY---ACTSI 471
Query: 456 DA-LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+ + ++E L FR GK +L AT V G+ + N +VI FDLP + Y+ GR
Sbjct: 472 HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 531
Query: 515 ARQHNSQFILMLERSERSVTDT 536
+ + + +ER++ T
Sbjct: 532 TGRVGNLGLATSFFNERNINIT 553
Score = 75 (31.5 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 36/140 (25%), Positives = 68/140 (48%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVM-LIKDI--------AQAIKSNGF---KK---LIIFLA 100
+ ++R+ +A +TG+GKT ++ ++ I +A+K NG +K + + LA
Sbjct: 214 IKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLA 273
Query: 101 PTVHLVHQQYDVIRVHT-DFEVEE--YYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILL 156
PT L Q Y+ R + V YG + + Q +++ + +LV TP L+
Sbjct: 274 PTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQ---QI--RDLERGCHLLVATPGRLV 328
Query: 157 DALRKAFLSLDIVCFIVIDE 176
D + + + LD ++V+DE
Sbjct: 329 DMMERGKIGLDFCKYLVLDE 348
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 113 (44.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS---RGRARQHNSQFI 523
L+ FR GK+ LL A+DV G+ VP+ S+V FD+P Y+ GRA +
Sbjct: 295 LDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAIT 354
Query: 524 LMLERSERSV 533
L + R E+++
Sbjct: 355 LCIPRDEKAL 364
Score = 78 (32.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 33/122 (27%), Positives = 53/122 (43%)
Query: 60 RNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL---VHQQYDVIRV 115
R+ + + +TG GKT + +I +A+ + ++ L PT L V + +D
Sbjct: 40 RDVLGIAQTGTGKTASFTLPMITLLARGRARARMPRSLV-LCPTRELAAQVAENFDTYTK 98
Query: 116 HTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCFIVI 174
H G E D+ I++ DVL+ TP LLD + L L V +V+
Sbjct: 99 HLKLTKALLIGGVSFKEQDAL-----IDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVV 153
Query: 175 DE 176
DE
Sbjct: 154 DE 155
>FB|FBgn0027602 [details] [associations]
symbol:CG8611 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806
GeneTree:ENSGT00550000075041 EMBL:AF145609 RefSeq:NP_573214.1
RefSeq:NP_788922.1 UniGene:Dm.3172 ProteinModelPortal:Q86B47
SMR:Q86B47 IntAct:Q86B47 MINT:MINT-776497 PaxDb:Q86B47 PRIDE:Q86B47
EnsemblMetazoa:FBtr0074440 GeneID:32725 KEGG:dme:Dmel_CG8611
UCSC:CG8611-RB FlyBase:FBgn0027602 InParanoid:Q86B47 OMA:YTERDPE
OrthoDB:EOG47SQVT PhylomeDB:Q86B47 GenomeRNAi:32725 NextBio:780053
Bgee:Q86B47 Uniprot:Q86B47
Length = 975
Score = 103 (41.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 37/153 (24%), Positives = 67/153 (43%)
Query: 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496
+P L L L GS T + ++ V FR +L ATDV+ G+ VP+ V
Sbjct: 673 IPLLQGLRFFKLHGSMTQTE------RQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLV 726
Query: 497 IRFDLPKTVSSYIQSRGR-ARQ-HNSQFILMLERSERSVTDTALSRDPEACFLKACTYVK 554
+++ P+T + ++ GR AR + +L L SE L + + Y
Sbjct: 727 VQYTPPQTTADFVHRVGRTARAGRKGRAVLFLTPSEAQFV-RHLEKK-RIRIQQGDMYAY 784
Query: 555 TKSYIVESTGASVTTDSSVNLIHRYCEMLPSDK 587
++ + + A +++ NL H++ +L D+
Sbjct: 785 LQTLLPKDDEARTVQEAASNLQHKFQTLLEDDR 817
Score = 96 (38.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 52/227 (22%), Positives = 100/227 (44%)
Query: 28 HDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAI 87
H HAV SI + + Q + EV + ++ + +TG+GKT+ + + ++ Q
Sbjct: 335 HPHAVKNLEDLL-SIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQ 393
Query: 88 KSNGFKK---LIIFLAPTVHLVHQQYDVI----RVHTDFEVEEYYGAKGVDEWDSQCWQK 140
+ +K L + + PT LV Q Y++I + +T G + ++ +K
Sbjct: 394 QPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARL-RK 452
Query: 141 EINKNDVLVMTPQILLD-ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199
IN +L+ TP L+D L A L + F+++DE Y + +K+ D
Sbjct: 453 GIN---ILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLL-ELGYERDVKQLVEAIDK 508
Query: 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELES-TLDSQVFTIEDKTE 245
+ P +++ + SA Q+ +L TL + ++ I++ E
Sbjct: 509 QRAECEDKELPQLQRMLLSAT-LTSQVQQLAGLTLKNPLY-IDNSDE 553
>UNIPROTKB|F1SUG8 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
Length = 737
Score = 101 (40.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 43/137 (31%), Positives = 67/137 (48%)
Query: 50 QLKVF-EVAKRRNTIAVLETGAGKTM-IAVMLIKDIA---QAIKSNGFKKLIIFLAPTVH 104
Q+K F V + ++ IA TG GKT A+ LI+ + + IK + K+++ LAPT
Sbjct: 164 QVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLV-LAPTRE 222
Query: 105 LVHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEIN--KN--DVLVMTPQILLDAL 159
L +Q D + V +YG +Q +IN +N D+LV TP + D L
Sbjct: 223 LANQVAKDFKDITKKLSVACFYGGTS--------YQSQINHIRNGIDILVGTPGRIKDHL 274
Query: 160 RKAFLSLDIVCFIVIDE 176
+ L L + +V+DE
Sbjct: 275 QSGRLDLSKLRHVVLDE 291
Score = 95 (38.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 463 QKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
Q+E+ L+ FR G +L AT+V G+ +P VI+ P+ V SYI GR
Sbjct: 426 QREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGR 478
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 101 (40.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
+ VL+ F+ G + +L ATD+ G+ + VI F+LP++ S Y+ GR+
Sbjct: 294 RSRVLDGFKAGDIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRS 346
Score = 89 (36.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 54/201 (26%), Positives = 88/201 (43%)
Query: 60 RNTIAVLETGAGKTM-IAVMLIKDIAQAIKS---NGFKKLI--IFLAPTVHLVHQQYDVI 113
R+ IA TG+GKT A+ +++ + + I S N + + L PT L Q D I
Sbjct: 46 RDLIAGANTGSGKTATFALPMLQKLREDISSGSKNSKGNFVTGLVLVPTRELAKQVADSI 105
Query: 114 R---VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
+ VH + E++ GV + Q D+LV TP LLD + + LD V
Sbjct: 106 KSYAVHFNGEIKTLAVFGGVSV-NIQMLALR-GGVDILVATPGRLLDLISSNAIKLDKVK 163
Query: 171 FIVIDECHHATGNHPYTKIMKEFYHKSDNKPK--VFGMTASPVVRKGVSSAMD--CEGQI 226
+V+DE + +T+ + + K + +F T V ++ E Q+
Sbjct: 164 TLVLDEADRML-SLGFTEELTALLALTPKKKQTLLFSATFPEQVTTLTQELLNNPIEIQL 222
Query: 227 SELE-STLDSQVFTIE--DKT 244
+ STL +VFT+ +KT
Sbjct: 223 QSADASTLVQRVFTVNKGEKT 243
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 120 (47.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 35/113 (30%), Positives = 52/113 (46%)
Query: 402 LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPK 461
LL L + GK + L ++FVE A +E F+ F + G + D
Sbjct: 430 LLDLLNATGKDS--LTLVFVETKKGADSLENFL----FQERYACTSIHGDRSQKD----- 478
Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
++E L FR G+ +L AT V G+ + N +VI FDLP + Y+ GR
Sbjct: 479 -REEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 530
Score = 74 (31.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 35/138 (25%), Positives = 65/138 (47%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVM-LIKDI--------AQAIKSNGF---KK---LIIFLA 100
+ ++R+ +A +TG+GKT ++ ++ I +A+K NG +K + + LA
Sbjct: 213 IKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLA 272
Query: 101 PTVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDA 158
PT L Q Y+ R + V G D +++ + +LV TP L+D
Sbjct: 273 PTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQI---RDLERGCHLLVATPGRLVDM 329
Query: 159 LRKAFLSLDIVCFIVIDE 176
+ + + LD ++V+DE
Sbjct: 330 MERGKIGLDFCKYLVLDE 347
>UNIPROTKB|C9JE76 [details] [associations]
symbol:DHX58 "Probable ATP-dependent RNA helicase DHX58"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0032480 "negative
regulation of type I interferon production" evidence=IEA]
[GO:0032481 "positive regulation of type I interferon production"
evidence=IEA] [GO:0039536 "negative regulation of RIG-I signaling
pathway" evidence=IEA] [GO:0045824 "negative regulation of innate
immune response" evidence=IEA] [GO:1900245 "positive regulation of
MDA-5 signaling pathway" evidence=IEA] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=IEA]
InterPro:IPR006935 Pfam:PF04851 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0051607 GO:GO:0016787 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0032480 GO:GO:0039536
GO:GO:0045824 GO:GO:1900245 GO:GO:1900246 HGNC:HGNC:29517
ChiTaRS:DHX58 GO:GO:0032481 EMBL:AC105024 IPI:IPI00794515
ProteinModelPortal:C9JE76 SMR:C9JE76 STRING:C9JE76
Ensembl:ENST00000430773 HOGENOM:HOG000200084 ArrayExpress:C9JE76
Bgee:C9JE76 Uniprot:C9JE76
Length = 156
Score = 117 (46.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 46/154 (29%), Positives = 69/154 (44%)
Query: 47 RIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
R YQ +V A + +N I L TGAGKT A + K + + +G K ++ L VHL
Sbjct: 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV--DGAK--VVVLVNRVHL 59
Query: 106 VHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL---- 159
V Q + R D + V G G +D+L+ T ++L AL
Sbjct: 60 VTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHL----ARCHDLLICTAELLQMALTSPE 115
Query: 160 RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193
+ + L + IV+DECHH + Y IM ++
Sbjct: 116 EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQY 149
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 119 (46.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 40/120 (33%), Positives = 57/120 (47%)
Query: 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
S K LL L + GK + L ++FVE A +E FL H Y + TS+
Sbjct: 425 SDKRSFLLDLLNATGKDS--LTLVFVETKKGADSLE------DFLYH--EGY---ACTSI 471
Query: 456 DA-LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+ + ++E L FR GK +L AT V G+ + N +VI FDLP + Y+ GR
Sbjct: 472 HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 531
Score = 75 (31.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 36/140 (25%), Positives = 68/140 (48%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVM-LIKDI--------AQAIKSNGF---KK---LIIFLA 100
+ ++R+ +A +TG+GKT ++ ++ I +A+K NG +K + + LA
Sbjct: 214 IKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLA 273
Query: 101 PTVHLVHQQYDVIRVHT-DFEVEE--YYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILL 156
PT L Q Y+ R + V YG + + Q +++ + +LV TP L+
Sbjct: 274 PTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQ---QI--RDLERGCHLLVATPGRLV 328
Query: 157 DALRKAFLSLDIVCFIVIDE 176
D + + + LD ++V+DE
Sbjct: 329 DMMERGKIGLDFCKYLVLDE 348
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 118 (46.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 41/136 (30%), Positives = 64/136 (47%)
Query: 402 LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA-LTP 460
LL L + GK + L ++FVE A +E FL H Y + TS+ +
Sbjct: 431 LLDLLNATGKDS--LTLVFVETKKGADSLE------DFLYH--EGY---ACTSIHGDRSQ 477
Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
+ ++E L FR GK +L AT V G+ + N +VI FDLP + Y+ GR + +
Sbjct: 478 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 537
Query: 521 QFILMLERSERSVTDT 536
+ +ER++ T
Sbjct: 538 LGLATSFFNERNINIT 553
Score = 76 (31.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 35/137 (25%), Positives = 65/137 (47%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVM-LIKDI--------AQAIKSNGF---KK---LIIFLA 100
+ ++R+ +A +TG+GKT ++ ++ I +A+K NG +K + + LA
Sbjct: 214 IKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLA 273
Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDAL 159
PT L Q Y+ R + G E Q +++ + +LV TP L+D +
Sbjct: 274 PTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQI--RDLERGCHLLVATPGRLVDMM 331
Query: 160 RKAFLSLDIVCFIVIDE 176
+ + LD ++V+DE
Sbjct: 332 ERGKIGLDFCKYLVLDE 348
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 118 (46.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 41/136 (30%), Positives = 64/136 (47%)
Query: 402 LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA-LTP 460
LL L + GK + L ++FVE A +E FL H Y + TS+ +
Sbjct: 431 LLDLLNATGKDS--LTLVFVETKKGADSLE------DFLYH--EGY---ACTSIHGDRSQ 477
Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
+ ++E L FR GK +L AT V G+ + N +VI FDLP + Y+ GR + +
Sbjct: 478 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 537
Query: 521 QFILMLERSERSVTDT 536
+ +ER++ T
Sbjct: 538 LGLATSFFNERNINIT 553
Score = 76 (31.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 35/137 (25%), Positives = 65/137 (47%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVM-LIKDI--------AQAIKSNGF---KK---LIIFLA 100
+ ++R+ +A +TG+GKT ++ ++ I +A+K NG +K + + LA
Sbjct: 214 IKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLA 273
Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDAL 159
PT L Q Y+ R + G E Q +++ + +LV TP L+D +
Sbjct: 274 PTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQI--RDLERGCHLLVATPGRLVDMM 331
Query: 160 RKAFLSLDIVCFIVIDE 176
+ + LD ++V+DE
Sbjct: 332 ERGKIGLDFCKYLVLDE 348
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 109 (43.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNS 520
V++ FR GK L ATDV G+ + N ++VI +D+P SY+ GR R NS
Sbjct: 284 VMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNS 339
Score = 81 (33.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 37/133 (27%), Positives = 64/133 (48%)
Query: 46 PRIYQLKVFEVAKRRNTIAVL-ETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
P Q +V VA ++ + V +TG+GKT A I + + ++ K + L PT
Sbjct: 27 PTEVQGEVIPVALQKKDLVVKSQTGSGKT--ASFGIP-LCEMVEWEENKPQALVLTPTRE 83
Query: 105 LVHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
L Q + D+ + F+ + G + Q + + K ++V TP +LD + K
Sbjct: 84 LAVQVKEDITNIGR-FKRIKAAAIYGKSPFARQKLELK-QKTHIVVGTPGRVLDHIEKGT 141
Query: 164 LSLDIVCFIVIDE 176
LSL+ + ++VIDE
Sbjct: 142 LSLERLKYLVIDE 154
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 109 (43.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNS 520
V++ FR GK L ATDV G+ + N ++VI +D+P SY+ GR R NS
Sbjct: 284 VMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNS 339
Score = 81 (33.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 37/133 (27%), Positives = 64/133 (48%)
Query: 46 PRIYQLKVFEVAKRRNTIAVL-ETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
P Q +V VA ++ + V +TG+GKT A I + + ++ K + L PT
Sbjct: 27 PTEVQGEVIPVALQKKDLVVKSQTGSGKT--ASFGIP-LCEMVEWEENKPQALVLTPTRE 83
Query: 105 LVHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
L Q + D+ + F+ + G + Q + + K ++V TP +LD + K
Sbjct: 84 LAVQVKEDITNIGR-FKRIKAAAIYGKSPFARQKLELK-QKTHIVVGTPGRVLDHIEKGT 141
Query: 164 LSLDIVCFIVIDE 176
LSL+ + ++VIDE
Sbjct: 142 LSLERLKYLVIDE 154
>UNIPROTKB|E1BW15 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0043330 "response to exogenous dsRNA" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0043330 GeneTree:ENSGT00680000100003 OMA:EILCVAY
EMBL:AADN02028009 IPI:IPI00582179 Ensembl:ENSGALT00000006591
Uniprot:E1BW15
Length = 693
Score = 105 (42.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 460 PKVQKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
P+ Q+E+ L+ FR G +L AT+V G+ +P V++ PK V SYI GR
Sbjct: 399 PQKQREITLKGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGR 454
Score = 89 (36.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 40/133 (30%), Positives = 59/133 (44%)
Query: 50 QLKVFE-VAKRRNTIAVLETGAGKTM-IAVMLIKDIA--QAIKSNGFKKLIIFLAPTVHL 105
Q+K F V ++ IA TG GKT A+ LI+ + + G ++ LAPT L
Sbjct: 140 QVKTFNPVYSGKDVIAQARTGTGKTFSFAIPLIEKLQADSQERRRGRSPKVLVLAPTREL 199
Query: 106 VHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAF 163
+Q D + V +YG ++ Q I D+LV TP + D L+
Sbjct: 200 ANQVAKDFKDITRKLTVACFYGGT---PYNGQI--DLIRSGIDILVGTPGRIKDHLQNGK 254
Query: 164 LSLDIVCFIVIDE 176
L L V +V+DE
Sbjct: 255 LDLTKVKHVVLDE 267
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 118 (46.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 41/136 (30%), Positives = 64/136 (47%)
Query: 402 LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA-LTP 460
LL L + GK + +L +FVE A +E FL H Y + TS+ +
Sbjct: 429 LLDLLNATGKDSLIL--VFVETKKGADSLE------DFLYH--EGY---ACTSIHGDRSQ 475
Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
+ ++E L FR GK +L AT V G+ + N +VI FDLP + Y+ GR + +
Sbjct: 476 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 535
Query: 521 QFILMLERSERSVTDT 536
+ +ER++ T
Sbjct: 536 LGLATSFFNERNINIT 551
Score = 75 (31.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 36/140 (25%), Positives = 68/140 (48%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVM-LIKDI--------AQAIKSNGF---KK---LIIFLA 100
+ ++R+ +A +TG+GKT ++ ++ I +A+K NG +K + + LA
Sbjct: 212 IKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLA 271
Query: 101 PTVHLVHQQYDVIRVHT-DFEVEE--YYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILL 156
PT L Q Y+ R + V YG + + Q +++ + +LV TP L+
Sbjct: 272 PTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQ---QI--RDLERGCHLLVATPGRLV 326
Query: 157 DALRKAFLSLDIVCFIVIDE 176
D + + + LD ++V+DE
Sbjct: 327 DMMERGKIGLDFCKYLVLDE 346
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 118 (46.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 41/136 (30%), Positives = 64/136 (47%)
Query: 402 LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA-LTP 460
LL L + GK + +L +FVE A +E FL H Y + TS+ +
Sbjct: 430 LLDLLNATGKDSLIL--VFVETKKGADSLE------DFLYH--EGY---ACTSIHGDRSQ 476
Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
+ ++E L FR GK +L AT V G+ + N +VI FDLP + Y+ GR + +
Sbjct: 477 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 536
Query: 521 QFILMLERSERSVTDT 536
+ +ER++ T
Sbjct: 537 LGLATSFFNERNINIT 552
Score = 75 (31.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 36/140 (25%), Positives = 68/140 (48%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVM-LIKDI--------AQAIKSNGF---KK---LIIFLA 100
+ ++R+ +A +TG+GKT ++ ++ I +A+K NG +K + + LA
Sbjct: 213 IKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLA 272
Query: 101 PTVHLVHQQYDVIRVHT-DFEVEE--YYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILL 156
PT L Q Y+ R + V YG + + Q +++ + +LV TP L+
Sbjct: 273 PTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQ---QI--RDLERGCHLLVATPGRLV 327
Query: 157 DALRKAFLSLDIVCFIVIDE 176
D + + + LD ++V+DE
Sbjct: 328 DMMERGKIGLDFCKYLVLDE 347
>UNIPROTKB|F1MGC9 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:DAAA02044956 IPI:IPI01003566 ProteinModelPortal:F1MGC9
Ensembl:ENSBTAT00000022893 Uniprot:F1MGC9
Length = 546
Score = 113 (44.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQH 518
P +K +L+ F GK+ LL +TD + G+ V V+ +D P+ + +Y+ GR AR
Sbjct: 421 PGQRKSILKQFEQGKIQLLISTDAMARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAG 480
Query: 519 NS--QFILMLERSER 531
S F L+L+ ER
Sbjct: 481 KSGQAFTLLLKVQER 495
Score = 78 (32.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 33/118 (27%), Positives = 54/118 (45%)
Query: 68 TGAGKTMIAVMLIKDIAQAIKSNGFKKL-IIFLAPTVHLVHQQYDVIRVHTD---FEVEE 123
TG+GKT+ V+ + QA+ ++ + + PT L Q V V+TD V
Sbjct: 135 TGSGKTLAFVI---PVVQALLHRAVCQVRALVVLPTKELAQQVSKVFNVYTDATPLRVAL 191
Query: 124 YYGAKGVDEWDSQCWQKEINK----NDVLVMTPQILLDALRKA-FLSLDIVCFIVIDE 176
G K + + QK + D++V TP L+D + + SL + F++IDE
Sbjct: 192 ITGQKSLAKEQESLVQKTADGFRCLADIMVATPGRLVDHIDQTPGFSLQHLRFLIIDE 249
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 106 (42.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 461 KVQKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
K Q+E VL+ FR G+ ++ ATDV G+ V +YVI +D+P + Y+ GR
Sbjct: 394 KDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGR 450
Score = 85 (35.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 32/122 (26%), Positives = 60/122 (49%)
Query: 60 RNTIAVLETGAGKTMIAVM--LIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ-QYDVIRVH 116
R+ + + TG+GKT+ + ++ AQ + + G +++ LAPT L Q Q + +
Sbjct: 151 RDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFG 210
Query: 117 TDFEVEE--YYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVI 174
+ YG GV + SQ + +++++ TP L+D L +L V ++V+
Sbjct: 211 HSSRIRNTCVYG--GVPK--SQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVL 266
Query: 175 DE 176
DE
Sbjct: 267 DE 268
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 98 (39.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+VL FR G+ +L ATDV G+ V + V+ +D P V Y+ GR
Sbjct: 514 DVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGR 563
Score = 96 (38.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 56/222 (25%), Positives = 94/222 (42%)
Query: 46 PRIYQLKVFEVA-KRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
P Q + + +A + R+ +A+ +TG+GKT+ + + + + I+ L+PT
Sbjct: 252 PSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTR 311
Query: 104 HLVHQ-QYDVIRVHTDFEVE---EYYGA-KGVDEWDSQCWQKEINKN-DVLVMTPQILLD 157
L Q Q + ++ ++ Y GA KG KEI + D++V TP L D
Sbjct: 312 ELATQIQVEALKFGKSSKISCACLYGGAPKGPQ-------LKEIERGVDIVVATPGRLND 364
Query: 158 ALRKAFLSLDIVCFIVIDECHHAT--GNHPYT-KIMKEFYHKSDNKPKVFGMTASPVVRK 214
L +SL V ++V+DE G P KI+ E K + ++ T VRK
Sbjct: 365 ILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTK--RQTLMYTATWPKEVRK 422
Query: 215 GVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKES 256
+ + Q++ +D V +EV P K S
Sbjct: 423 IAADLLVNPAQVNI--GNVDELVANKSITQTIEVLAPMEKHS 462
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 126 (49.4 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 40/130 (30%), Positives = 63/130 (48%)
Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV---KKVPFL-THLTV 445
V +G + ++ Q L G+ ++ ++ + R I + FV KK F+ T L
Sbjct: 483 VAVGQVGGACSDVQQTVLQVGQYSKREKLVEILRNIGEERTMVFVETKKKADFIATFLCQ 542
Query: 446 AYLTGSTTSVDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT 504
+ STTS+ + ++E L FR GK +L AT V G+ + N +VI FDLP T
Sbjct: 543 EKI--STTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPST 600
Query: 505 VSSYIQSRGR 514
+ Y+ GR
Sbjct: 601 IDEYVHRIGR 610
Score = 67 (28.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 32/126 (25%), Positives = 56/126 (44%)
Query: 60 RNTIAVLETGAGKT--MIAVMLIKDIAQAIKSNGFKKL----IIFLAPTVHLVHQQYDVI 113
R+ +A +TG+GKT + +L + + ++ FK I +APT L++Q +
Sbjct: 304 RDLMACAQTGSGKTAAFLLPILAHMMRDGVTASRFKDQQEPECIIVAPTRELINQIFLEA 363
Query: 114 RVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
R T YG + Q Q ++L TP L+D + K + L +
Sbjct: 364 RKFSFGTCVRPVVIYGGTQLGHSIRQIMQG----CNILCATPGRLMDIIGKEKIGLGQIR 419
Query: 171 FIVIDE 176
++V+DE
Sbjct: 420 YLVLDE 425
>UNIPROTKB|E2R5R1 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141
CTD:317781 EMBL:AAEX03014583 RefSeq:XP_543351.2
Ensembl:ENSCAFT00000010222 GeneID:486226 KEGG:cfa:486226
Uniprot:E2R5R1
Length = 631
Score = 111 (44.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-AR-- 516
P +K VL+ F GK+ LL +TD + G+ V VI +D P+ + +Y+ GR AR
Sbjct: 506 PGQRKVVLKQFEQGKIQLLISTDAMARGIDVQGVQLVINYDAPQYLRTYVHRVGRTARAG 565
Query: 517 QHNSQFILMLERSER 531
+ F L+L+ ER
Sbjct: 566 RTGQAFTLLLKVQER 580
Score = 81 (33.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 47/178 (26%), Positives = 77/178 (43%)
Query: 14 EVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQ--LKVFEVAK---RRNTIAV-LE 67
EVH PDM H + ++ IP + + F VA+ R + + V
Sbjct: 168 EVH----PDMQKKLQAHGISSYFPVQAAV--IPTLLESIANGFLVARGGYRPSDLCVSAP 221
Query: 68 TGAGKTMIAVMLIKDIAQAIKSNGFKKL-IIFLAPTVHLVHQQYDVIRVHTD---FEVEE 123
TG+GKT+ V+ + QA+ ++ + + PT L Q V ++TD V
Sbjct: 222 TGSGKTLAFVI---PVVQALLCRAVCQVRALVVLPTKELAQQVSKVFNIYTDATPLRVAL 278
Query: 124 YYGAKGVDEWDSQCWQKEINK----NDVLVMTPQILLDALRKA-FLSLDIVCFIVIDE 176
G K + + QK ++ DV+V TP L+D + + SL + F++IDE
Sbjct: 279 ITGQKSLVKEQESLVQKTVDGFRCLADVVVATPGRLVDHIDQTPGFSLQHLRFLIIDE 336
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 101 (40.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 54/222 (24%), Positives = 97/222 (43%)
Query: 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKT-MIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
P Q++ VA + R+ I + ETG+GKT AV +++ + + L+ L PT
Sbjct: 102 PTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQSLLACAQR--LHTLV--LTPTR 157
Query: 104 HLVHQ---QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
L Q Q+D + + G G+D SQ K V++ TP L+D +
Sbjct: 158 ELAFQIAEQFDALGSSIGVKTAVIVG--GIDMM-SQALVLA-KKPHVVIATPGRLIDHME 213
Query: 161 --KAFLSLDIVCFIVIDECHHATG---NHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKG 215
K F +L + ++V+DE KI+K D + +F T + V+K
Sbjct: 214 NTKGF-NLRALKYLVMDEADRILNMDFESEVDKILKVI--PRDRRTFLFSATMTKKVQKL 270
Query: 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESC 257
+A+ ++ ++ S+ T++ + +F+PS + C
Sbjct: 271 QRAALQ-----DPVKCSVSSKYATVDKLQQFYIFIPSKYKDC 307
Score = 89 (36.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNS 520
L F+ ++L ATDV G+ +P+ VI FD+P YI GR AR S
Sbjct: 361 LNKFKSKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRS 415
>ZFIN|ZDB-GENE-031030-2 [details] [associations]
symbol:eif4a1a "eukaryotic translation initiation
factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
Uniprot:Q802C9
Length = 406
Score = 106 (42.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 38/147 (25%), Positives = 67/147 (45%)
Query: 399 LHELLQLFLSFGKST---QVLCIIFVERIIAAKVVERFV---KKVPFLTHLTVAY-LTGS 451
L + Q +++ K LC ++ I V+ F+ +KV +LT A T S
Sbjct: 243 LEGIRQFYINVEKEEWKLDTLCDLYETLTITQAVI--FINTRRKVDWLTEKMHARDFTVS 300
Query: 452 TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
D + K + +++ FR G +L TD++ G+ V S VI +DLP +YI
Sbjct: 301 ALHGD-MEQKERDVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 359
Query: 512 RGRARQHNSQFI---LMLERSERSVTD 535
GR + + + ++ E +R++ D
Sbjct: 360 IGRGGRFGRKGVAINMITEDDKRTLRD 386
Score = 81 (33.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 30/130 (23%), Positives = 57/130 (43%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
I Q + K + IA ++G GKT A+ +++ I +K+ + ++ LAPT L
Sbjct: 58 IQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIDVELKAT--QAMV--LAPTRELA 113
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
Q V+ D+ + G + + + + ++V TP + D L + +LS
Sbjct: 114 QQIQKVVLALGDYMGATCHACIGGTNVRNDVQKLQADVPHIVVGTPGRVFDMLNRRYLSP 173
Query: 167 DIVCFIVIDE 176
+ +DE
Sbjct: 174 KYIKMFALDE 183
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 117 (46.2 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 33/105 (31%), Positives = 53/105 (50%)
Query: 416 LCIIFVERIIAAKVVERFVK-KVPFLTH-LTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473
LC ++ I V+ K KV +LT + A T S+ D + K ++ +++ FR G
Sbjct: 268 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD-MPQKERESIMKEFRSG 326
Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518
+L +TDV G+ VP S +I +DLP YI GR+ ++
Sbjct: 327 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 371
Score = 69 (29.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 30/129 (23%), Positives = 55/129 (42%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q + ++ K R+ IA ++G GKT A I + Q + + + LAPT L
Sbjct: 64 IQQRAIKQIIKGRDVIAQSQSGTGKT--ATFSIS-VLQCLDIQVRETQALILAPTRELAV 120
Query: 108 QQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
Q + D+ + + G + + ++ V+ TP + D +R+ L
Sbjct: 121 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH-VVAGTPGRVFDMIRRRSLRTR 179
Query: 168 IVCFIVIDE 176
+ +V+DE
Sbjct: 180 AIKMLVLDE 188
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 117 (46.2 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 33/105 (31%), Positives = 53/105 (50%)
Query: 416 LCIIFVERIIAAKVVERFVK-KVPFLTH-LTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473
LC ++ I V+ K KV +LT + A T S+ D + K ++ +++ FR G
Sbjct: 268 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD-MPQKERESIMKEFRSG 326
Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518
+L +TDV G+ VP S +I +DLP YI GR+ ++
Sbjct: 327 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 371
Score = 69 (29.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 30/129 (23%), Positives = 55/129 (42%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q + ++ K R+ IA ++G GKT A I + Q + + + LAPT L
Sbjct: 64 IQQRAIKQIIKGRDVIAQSQSGTGKT--ATFSIS-VLQCLDIQVRETQALILAPTRELAV 120
Query: 108 QQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
Q + D+ + + G + + ++ V+ TP + D +R+ L
Sbjct: 121 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH-VVAGTPGRVFDMIRRRSLRTR 179
Query: 168 IVCFIVIDE 176
+ +V+DE
Sbjct: 180 AIKMLVLDE 188
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 117 (46.2 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 33/105 (31%), Positives = 53/105 (50%)
Query: 416 LCIIFVERIIAAKVVERFVK-KVPFLTH-LTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473
LC ++ I V+ K KV +LT + A T S+ D + K ++ +++ FR G
Sbjct: 268 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD-MPQKERESIMKEFRSG 326
Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518
+L +TDV G+ VP S +I +DLP YI GR+ ++
Sbjct: 327 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 371
Score = 69 (29.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 30/129 (23%), Positives = 55/129 (42%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q + ++ K R+ IA ++G GKT A I + Q + + + LAPT L
Sbjct: 64 IQQRAIKQIIKGRDVIAQSQSGTGKT--ATFSIS-VLQCLDIQVRETQALILAPTRELAV 120
Query: 108 QQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
Q + D+ + + G + + ++ V+ TP + D +R+ L
Sbjct: 121 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH-VVAGTPGRVFDMIRRRSLRTR 179
Query: 168 IVCFIVIDE 176
+ +V+DE
Sbjct: 180 AIKMLVLDE 188
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 117 (46.2 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 33/105 (31%), Positives = 53/105 (50%)
Query: 416 LCIIFVERIIAAKVVERFVK-KVPFLTH-LTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473
LC ++ I V+ K KV +LT + A T S+ D + K ++ +++ FR G
Sbjct: 268 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD-MPQKERESIMKEFRSG 326
Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518
+L +TDV G+ VP S +I +DLP YI GR+ ++
Sbjct: 327 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 371
Score = 69 (29.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 30/129 (23%), Positives = 55/129 (42%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q + ++ K R+ IA ++G GKT A I + Q + + + LAPT L
Sbjct: 64 IQQRAIKQIIKGRDVIAQSQSGTGKT--ATFSIS-VLQCLDIQVRETQALILAPTRELAV 120
Query: 108 QQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
Q + D+ + + G + + ++ V+ TP + D +R+ L
Sbjct: 121 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH-VVAGTPGRVFDMIRRRSLRTR 179
Query: 168 IVCFIVIDE 176
+ +V+DE
Sbjct: 180 AIKMLVLDE 188
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 117 (46.2 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 33/105 (31%), Positives = 53/105 (50%)
Query: 416 LCIIFVERIIAAKVVERFVK-KVPFLTH-LTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473
LC ++ I V+ K KV +LT + A T S+ D + K ++ +++ FR G
Sbjct: 268 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD-MPQKERESIMKEFRSG 326
Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518
+L +TDV G+ VP S +I +DLP YI GR+ ++
Sbjct: 327 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 371
Score = 69 (29.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 30/129 (23%), Positives = 55/129 (42%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q + ++ K R+ IA ++G GKT A I + Q + + + LAPT L
Sbjct: 64 IQQRAIKQIIKGRDVIAQSQSGTGKT--ATFSIS-VLQCLDIQVRETQALILAPTRELAV 120
Query: 108 QQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
Q + D+ + + G + + ++ V+ TP + D +R+ L
Sbjct: 121 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH-VVAGTPGRVFDMIRRRSLRTR 179
Query: 168 IVCFIVIDE 176
+ +V+DE
Sbjct: 180 AIKMLVLDE 188
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 117 (46.2 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 33/105 (31%), Positives = 53/105 (50%)
Query: 416 LCIIFVERIIAAKVVERFVK-KVPFLTH-LTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473
LC ++ I V+ K KV +LT + A T S+ D + K ++ +++ FR G
Sbjct: 269 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD-MPQKERESIMKEFRSG 327
Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518
+L +TDV G+ VP S +I +DLP YI GR+ ++
Sbjct: 328 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 372
Score = 69 (29.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 30/129 (23%), Positives = 55/129 (42%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q + ++ K R+ IA ++G GKT A I + Q + + + LAPT L
Sbjct: 65 IQQRAIKQIIKGRDVIAQSQSGTGKT--ATFSIS-VLQCLDIQVRETQALILAPTRELAV 121
Query: 108 QQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
Q + D+ + + G + + ++ V+ TP + D +R+ L
Sbjct: 122 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH-VVAGTPGRVFDMIRRRSLRTR 180
Query: 168 IVCFIVIDE 176
+ +V+DE
Sbjct: 181 AIKMLVLDE 189
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 99 (39.9 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 54/231 (23%), Positives = 101/231 (43%)
Query: 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
P Q++ +A + R+ I + ETG+GKT + I A+ + + L PT
Sbjct: 47 PTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL---PILNALLETPQRLFALVLTPTRE 103
Query: 105 LVHQ---QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR- 160
L Q Q++ + + V+ G+D SQ K +++ TP L+D L
Sbjct: 104 LAFQISEQFEALG--SSIGVQSAVIVGGIDSM-SQSLALA-KKPHIIIATPGRLIDHLEN 159
Query: 161 -KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSS 218
K F +L + ++V+DE T++ K D K +F T + V+K +
Sbjct: 160 TKGF-NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRA 218
Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSA-KESCRFYDQSKFCGS 268
A+ + ++ + S+ T+E + +F+PS K++ Y ++ G+
Sbjct: 219 ALK-----NPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264
Score = 89 (36.4 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQHNS 520
L F+ ++L ATDV G+ +P+ V+ FD+P YI GR AR S
Sbjct: 306 LNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 360
>MGI|MGI:1919236 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919236 GO:GO:0005739
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 GO:GO:0042645
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:AK010396 EMBL:AK163480 EMBL:BC120556 EMBL:BC120582
IPI:IPI00109544 RefSeq:NP_082314.2 UniGene:Mm.307515
ProteinModelPortal:Q9CWT6 SMR:Q9CWT6 PhosphoSite:Q9CWT6
PRIDE:Q9CWT6 Ensembl:ENSMUST00000058579 GeneID:71986 KEGG:mmu:71986
GeneTree:ENSGT00670000098028 InParanoid:Q0VBM0 OMA:LCSKGWK
NextBio:335138 Bgee:Q9CWT6 CleanEx:MM_DDX28 Genevestigator:Q9CWT6
GermOnline:ENSMUSG00000045538 Uniprot:Q9CWT6
Length = 540
Score = 95 (38.5 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
+ +SF+ G N+L TD+ G+ + VI +D P T+ YI GR + S+
Sbjct: 439 IFQSFQKGSQNILVCTDIASRGLDSVHVEVVINYDFPPTLQDYIHRAGRVGRVGSE 494
Score = 95 (38.5 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 40/139 (28%), Positives = 63/139 (45%)
Query: 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVM-LIKDIAQA--IKSNGFKKLI-IFLA 100
P Q K R R+ + ETG+GKT+ ++ L + + + + S F + L
Sbjct: 151 PTSVQSKTIPPLLRGRHLLCAAETGSGKTLSYLLPLFQRLLRGSDLDSRSFTAPRGLVLV 210
Query: 101 PTVHLVHQQYDVIRV---HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
P+ L Q V + + +V E G G+ Q +++ DVLV TP L
Sbjct: 211 PSRELAEQVQAVAQSLGGYLGLQVIELGGGLGMSRLKLQLYRRPAA--DVLVATPGALWK 268
Query: 158 ALRKAFLSLDIVCFIVIDE 176
AL+ +SL + FIV+DE
Sbjct: 269 ALKSQLISLQHLNFIVLDE 287
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 109 (43.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 32/105 (30%), Positives = 52/105 (49%)
Query: 416 LCIIFVERIIAAKVVERFVK-KVPFLTH-LTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473
LC ++ I V+ K KV +LT + A T S+ D + K ++ +++ FR G
Sbjct: 263 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD-MPQKERESIMKEFRSG 321
Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518
+L +TDV G+ V S +I +DLP YI GR+ ++
Sbjct: 322 ASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRY 366
Score = 77 (32.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 30/129 (23%), Positives = 56/129 (43%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q + ++ K R+ IA ++G GKT A + + Q + + + LAPT L
Sbjct: 59 IQQRAIKQIIKGRDVIAQSQSGTGKT--ATFCVS-VLQCLDIQVRETQALILAPTRELAG 115
Query: 108 QQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
Q V+ D+ + + G + + ++ V+ TP + D +R+ L
Sbjct: 116 QIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH-VVAGTPGRVFDMIRRRSLRTR 174
Query: 168 IVCFIVIDE 176
+ +V+DE
Sbjct: 175 AIKMLVLDE 183
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 120 (47.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 35/109 (32%), Positives = 53/109 (48%)
Query: 406 FLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKE 465
+LS G + LC+IFVE + + F+ + F T + G T P+ ++
Sbjct: 497 YLS-GLKSDGLCLIFVETKRSCDTLTYFLNQRNFPT----TCIHGDLTQ-----PE-REN 545
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
L+SFR L ATD+ G+H+ N + VI FDLP + Y+ GR
Sbjct: 546 ALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGR 594
Score = 72 (30.4 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 43/160 (26%), Positives = 71/160 (44%)
Query: 56 VAKRRNTIAVLETGAGKT------MIAVMLIKDIAQAIKSN--GFKKLI----IFLAPTV 103
+ K R+ +A +TG+GKT +I+ +L+ +A + G + + LAPT
Sbjct: 281 ILKNRDLMACAQTGSGKTAAFLFPIISGILLDGAPEAPPAYKPGVPRAACPRALVLAPTR 340
Query: 104 HLVHQQYDVIRVHTD----FEVEEYYGAK---GVDEWDSQCWQKEINKNDVLVMTPQILL 156
L Q +D + V Y GA+ ++E D C D+LV T L+
Sbjct: 341 ELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGC--------DILVATTGRLV 392
Query: 157 DALRKAFLSLDIVCFIVIDECHHAT--GNHPYTK-IMKEF 193
D L + +SL + ++V+DE G P + I+ EF
Sbjct: 393 DLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEF 432
>TAIR|locus:2020078 [details] [associations]
symbol:EIF4A-2 "eif4a-2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006096 "glycolysis" evidence=RCA] [GO:0009651 "response to
salt stress" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005886 GO:GO:0009506
GO:GO:0005524 GO:GO:0005774 GO:GO:0046686 EMBL:AC005287
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 EMBL:X65053
EMBL:AF386923 EMBL:AF428462 EMBL:BT008504 EMBL:AK226344
EMBL:AY087965 IPI:IPI00522023 PIR:JC1453 RefSeq:NP_175829.1
UniGene:At.195 ProteinModelPortal:P41377 SMR:P41377 STRING:P41377
PaxDb:P41377 PRIDE:P41377 ProMEX:P41377 EnsemblPlants:AT1G54270.1
GeneID:841868 KEGG:ath:AT1G54270 GeneFarm:936 TAIR:At1g54270
InParanoid:P41377 OMA:QVVWEEN PhylomeDB:P41377
ProtClustDB:CLSN2679594 Genevestigator:P41377 GermOnline:AT1G54270
Uniprot:P41377
Length = 412
Score = 104 (41.7 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 32/106 (30%), Positives = 50/106 (47%)
Query: 414 QVLCIIFVERIIAAKVVERFV---KKVPFLTH-LTVAYLTGSTTSVDALTPKVQKEVLES 469
+ LC ++ I V+ FV +KV +LT + T S T D + + ++
Sbjct: 267 ETLCDLYETLAITQSVI--FVNTRRKVDWLTDKMRSRDHTVSATHGD-MDQNTRDIIMRE 323
Query: 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
FR G +L TD++ G+ V S VI FDLP +Y+ GR+
Sbjct: 324 FRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 369
Score = 82 (33.9 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 36/132 (27%), Positives = 55/132 (41%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q + K + I ++G GKT + Q + + + LAPT L
Sbjct: 65 IQQRGIVPFCKGLDVIQQAQSGTGKT---ATFCSGVLQQLDYALLQCQALVLAPTRELAQ 121
Query: 108 QQYDVIRVHTDFE---VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
Q V+R D++ V G V E D + Q ++ V+V TP + D LR+ L
Sbjct: 122 QIEKVMRALGDYQGVKVHACVGGTSVRE-DQRILQAGVH---VVVGTPGRVFDMLRRQSL 177
Query: 165 SLDIVCFIVIDE 176
D + V+DE
Sbjct: 178 RPDCIKMFVLDE 189
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 100 (40.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 33/122 (27%), Positives = 56/122 (45%)
Query: 399 LHELLQLFLSFGKST---QVLCIIFVERIIAAKVVERFVK-KVPFLTHLTVAYLTGSTTS 454
L + Q F++ K LC ++ I V+ K KV +L+ ++ + +S
Sbjct: 245 LEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSH-NFTVSS 303
Query: 455 VDALTPKVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
+ P+ +++ ++ FR G +L TDV G+ V S VI +DLP YI G
Sbjct: 304 MHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 363
Query: 514 RA 515
R+
Sbjct: 364 RS 365
Score = 86 (35.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 30/132 (22%), Positives = 60/132 (45%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q V + + R+ IA ++G GKT M+ + Q + ++ + + L+PT L
Sbjct: 61 IQQRAVMPILQGRDVIAQAQSGTGKTS---MIALSVCQVVDTSSREVQALILSPTRELAT 117
Query: 108 QQYDVIR---VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
Q I+ +H + + G V E D + + ++ V+ TP + D +++ L
Sbjct: 118 QTEKTIQAIGLHANIQAHACIGGNSVGE-DIRKLEHGVH---VVSGTPGRVCDMIKRRSL 173
Query: 165 SLDIVCFIVIDE 176
+ +++DE
Sbjct: 174 RTRAIKLLILDE 185
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 104 (41.7 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+ + + + G++ LL ATDV G+ V S+VI FDLPK Y+ GR
Sbjct: 283 RNRTIAAMKQGRIRLLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGR 334
Score = 81 (33.6 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 30/115 (26%), Positives = 50/115 (43%)
Query: 63 IAVLETGAGKTMIAVM-LIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV 121
+A +TG GKT V+ ++ ++ + G ++ L PT L Q D +R + F
Sbjct: 42 LATAQTGTGKTAAFVLPALQRLSSPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMR 101
Query: 122 EEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDE 176
G + +Q D +V TP L+D L + L L + +V+DE
Sbjct: 102 VRSGAILGGMPYHAQLRLLSAPV-DFIVATPGRLVDLLDRRSLDLSRLELLVLDE 155
Score = 46 (21.3 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 648 LNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGE 698
L +H +P +E +S + PG G ++ P A GR G+
Sbjct: 367 LPEHHIPGLEPSRPLRRVSAGSGRKPGMGAGPARKGSSNRPSGAAPGRSGK 417
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 107 (42.7 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+++ L +F+ G +L AT V G+ +PN S+VI +DLP + Y+ GR
Sbjct: 482 REKALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGR 533
Score = 84 (34.6 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 40/135 (29%), Positives = 65/135 (48%)
Query: 56 VAKRRNTIAVLETGAGKT------MIAVMLIKDIAQAIKSNG-FKK-----LIIFLAPTV 103
VA R+ +A +TG+GKT +++ +K A +SNG F I+ +APT
Sbjct: 220 VAAGRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTR 279
Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGV-DEWDSQCWQKEINKN-DVLVMTPQILLDALRK 161
LV Q Y+ + F + A V D + +++ D+LV TP L D L +
Sbjct: 280 ELVSQIYEESK---KFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDR 336
Query: 162 AFLSLDIVCFIVIDE 176
+SL + ++V+DE
Sbjct: 337 GKVSLANIRYLVLDE 351
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 120 (47.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 41/136 (30%), Positives = 64/136 (47%)
Query: 402 LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA-LTP 460
LL L + GK + L ++FVE A +E FL H Y + TS+ +
Sbjct: 408 LLDLLNATGKDS--LTLVFVETKKGADALE------DFLYH--EGY---ACTSIHGDRSQ 454
Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
+ ++E L FR GK +L AT V G+ + N +VI FDLP + Y+ GR + +
Sbjct: 455 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 514
Query: 521 QFILMLERSERSVTDT 536
+ +ER++ T
Sbjct: 515 LGLATSFFNERNINIT 530
Score = 70 (29.7 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 36/141 (25%), Positives = 66/141 (46%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVMLIK---------DIAQAIKSN----GFKK---LIIFL 99
+ ++R+ +A +TG+GKT ++ I D +A+K+ G +K + + L
Sbjct: 190 IKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKATNGRYGRRKQYPISLVL 249
Query: 100 APTVHLVHQQYDVIRVHT-DFEVEE--YYGAKGVDEWDSQCWQKEINKN-DVLVMTPQIL 155
APT L Q Y+ R V YG + + Q +++ + +LV TP L
Sbjct: 250 APTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQ---QI--RDLERGCHLLVATPGRL 304
Query: 156 LDALRKAFLSLDIVCFIVIDE 176
+D + + + LD ++V+DE
Sbjct: 305 VDMMERGKIGLDFCKYLVLDE 325
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 111 (44.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNS 520
+ +E+FR GK ++L ATDV +G+ P +VI +D+P+ + +Y+ GR R N+
Sbjct: 472 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT 528
Score = 79 (32.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 40/173 (23%), Positives = 73/173 (42%)
Query: 60 RNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFKKLI----IFLAPTVHLVHQQYDVIR 114
R+ I + TG+GKT++ + +I + K F K + + P+ L Q + ++
Sbjct: 218 RDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILE 277
Query: 115 VHTDFEVEE----YYGAKGVDEWDSQCWQKEINKNDVLVM--TPQILLDALRKAFLSLDI 168
+ E+ + A + + Q E ++ V +M TP L+D L+K +SLDI
Sbjct: 278 YYCRLLQEDSSPLLHCALCIGGVSLK-EQMETMRHGVHIMVATPGRLMDLLQKKMVSLDI 336
Query: 169 VCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAM 220
++ +DE I F Y K + +F T ++ SA+
Sbjct: 337 CRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL 389
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 104 (41.7 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 461 KVQKE-VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+ Q+E ++ + GK ++L ATDV+ G+ +P S VI +DLP +Y+ GR
Sbjct: 290 QAQRERCIDQMKSGKSSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGR 344
Score = 86 (35.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 50/187 (26%), Positives = 77/187 (41%)
Query: 37 SSTNSINFIPR--IYQLKVFEVAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFK 93
S+ SI F I L + + ++ + +TG GKT + + I +IK K
Sbjct: 28 SAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAKIDTSIK----K 83
Query: 94 KLIIFLAPTVHLVHQQYDVIRVH-TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTP 152
++ LAPT L Q + I D + G + Q Q E V+V TP
Sbjct: 84 PQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGAQ-VVVGTP 142
Query: 153 QILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPK-----VFGMT 207
L+D LR+ L LD + V+DE N + +++ D+ PK +F T
Sbjct: 143 GRLMDHLRRKSLKLDELRVCVLDEADEML-NMGF---LEDIQWILDHIPKTAQMCLFSAT 198
Query: 208 ASPVVRK 214
P +RK
Sbjct: 199 MPPAIRK 205
>FB|FBgn0004556 [details] [associations]
symbol:Dbp73D "Dead box protein 73D" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0005730 GO:GO:0022008 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 KO:K14807 GeneTree:ENSGT00550000075141 EMBL:M74824
EMBL:AF132173 EMBL:BT010045 PIR:S28762 RefSeq:NP_476833.1
UniGene:Dm.3199 ProteinModelPortal:P26802 SMR:P26802 PaxDb:P26802
PRIDE:P26802 EnsemblMetazoa:FBtr0075347 GeneID:39871
KEGG:dme:Dmel_CG9680 CTD:39871 FlyBase:FBgn0004556
InParanoid:P26802 OMA:CSKTELE OrthoDB:EOG4B8GVH PhylomeDB:P26802
GenomeRNAi:39871 NextBio:815810 Bgee:P26802 GermOnline:CG9680
Uniprot:P26802
Length = 687
Score = 111 (44.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 30/103 (29%), Positives = 54/103 (52%)
Query: 433 FVKKVPFLTHLT-VAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491
FV KV F + T V+ L+G+ L+ KV+ E L F GK+N L +D + G+ V
Sbjct: 462 FVLKVLFQKYSTKVSELSGN------LSAKVRNERLRDFAAGKINGLICSDALARGIDVA 515
Query: 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSERSVT 534
+ V+ ++ P+ +++YI GR + + + +E+ +T
Sbjct: 516 DVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQDMT 558
Score = 80 (33.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 37/119 (31%), Positives = 60/119 (50%)
Query: 68 TGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI-RVHTDFEVEEYY 125
TG+GKT+ A+ +++ ++Q + + L++ P L Q Y VI + + E+E
Sbjct: 192 TGSGKTLAFAIPIVQLLSQRVDCK-VRALVVL--PVAELALQVYRVISELCSKTELEVCL 248
Query: 126 GAKG---VDEWDSQCWQ---KEINKNDVLVMTPQILLDALR--KAFLSLDIVCFIVIDE 176
+K DE + Q K +K D++V TP L+D L K F L + F+VIDE
Sbjct: 249 LSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLVDHLHATKGFC-LKSLKFLVIDE 306
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 111 (44.1 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 52/206 (25%), Positives = 94/206 (45%)
Query: 321 LDELGLICAYEAVKIC----LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLAD 376
LD+L ++ EA ++ +++ K E C RQ+ L +EV + +L
Sbjct: 334 LDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTMLFSATLNDEVKTLAKLSLQQPI 393
Query: 377 KIFLDFGFDYSKAVDLGYISTKLHELLQ---LFLSFGKSTQVL----CIIFVERIIAAKV 429
++ +D + ++ ++ K L + LS T+V IIF + K
Sbjct: 394 RVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSL--CTRVFNQGGTIIFCR---SKKE 448
Query: 430 VERFVKKVPF-LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488
V R ++ F L+ L A L G+ L+ + + + L+ FR G+VN L A+DV G+
Sbjct: 449 VHRL--RIIFGLSDLKAAELHGN------LSQEQRFDSLQQFRDGQVNYLLASDVASRGL 500
Query: 489 HVPNCSYVIRFDLPKTVSSYIQSRGR 514
+ VI +++P +++YI GR
Sbjct: 501 DIIGVKTVINYNMPNNMANYIHRVGR 526
Score = 81 (33.6 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 34/136 (25%), Positives = 64/136 (47%)
Query: 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAI-KSNGFKKL-IIFLAPT 102
P Q K +A ++ +A TG+GKT A L+ + + + + + ++ + ++ L PT
Sbjct: 213 PTPIQAKAIPLALNGKDILASASTGSGKT--AAFLLPVLERLLFRDSEYRAIRVLILLPT 270
Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRK 161
L Q V+ F V ++ + E+ K+ DV++ TP L+D L
Sbjct: 271 RELALQCQSVMENLAQFS--NITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLN 328
Query: 162 AF-LSLDIVCFIVIDE 176
A + LD + +++DE
Sbjct: 329 AHGIGLDDLEILILDE 344
>UNIPROTKB|F1SUG7 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
OMA:EILCVAY EMBL:CT737244 EMBL:CU468175 Ensembl:ENSSSCT00000011217
Uniprot:F1SUG7
Length = 855
Score = 102 (41.0 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 460 PKVQKEV-LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
P+ Q+E+ L+ FR G +L AT+V G+ +P V++ PK V SYI GR
Sbjct: 544 PQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGR 599
Score = 91 (37.1 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 39/132 (29%), Positives = 58/132 (43%)
Query: 50 QLKVFE-VAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAI--KSNGFKKLIIFLAPTVHL 105
Q K F V ++ IA TG GKT A+ LI+ + + + G ++ LAPT L
Sbjct: 285 QAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGELQDRKRGRAPQVLVLAPTREL 344
Query: 106 VHQ-QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
Q D + V +YG + Q + N D+LV TP + D L+ L
Sbjct: 345 ASQVSRDFSDITKKLAVACFYGGT---PYGGQI-DRMRNGIDILVGTPGRIKDHLQNNKL 400
Query: 165 SLDIVCFIVIDE 176
L + +V+DE
Sbjct: 401 DLTKLKHVVLDE 412
>TAIR|locus:2088237 [details] [associations]
symbol:EIF4A1 "eukaryotic translation initiation factor
4A1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005618 GO:GO:0046686 EMBL:CP002686 GO:GO:0005730
GO:GO:0016020 GO:GO:0048046 GO:GO:0006413 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OMA:SKRERIM
IPI:IPI00657454 RefSeq:NP_001030693.1 UniGene:At.23558
UniGene:At.28184 ProteinModelPortal:F4JEL4 SMR:F4JEL4 PRIDE:F4JEL4
EnsemblPlants:AT3G13920.2 GeneID:820605 KEGG:ath:AT3G13920
Uniprot:F4JEL4
Length = 415
Score = 104 (41.7 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 32/106 (30%), Positives = 50/106 (47%)
Query: 414 QVLCIIFVERIIAAKVVERFV---KKVPFLTH-LTVAYLTGSTTSVDALTPKVQKEVLES 469
+ LC ++ I V+ FV +KV +LT + T S T D + + ++
Sbjct: 267 ETLCDLYETLAITQSVI--FVNTRRKVDWLTDKMRSRDHTVSATHGD-MDQNTRDIIMRE 323
Query: 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
FR G +L TD++ G+ V S VI FDLP +Y+ GR+
Sbjct: 324 FRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 369
Score = 81 (33.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 35/132 (26%), Positives = 56/132 (42%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q + K + I ++G GKT + Q + + + + LAPT L
Sbjct: 65 IQQRGIVPFCKGLDVIQQAQSGTGKT---ATFCSGVLQQLDFSLIQCQALVLAPTRELAQ 121
Query: 108 QQYDVIRVHTDF---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
Q V+R D+ +V G V E D + Q ++ V+V TP + D L++ L
Sbjct: 122 QIEKVMRALGDYLGVKVHACVGGTSVRE-DQRILQAGVH---VVVGTPGRVFDMLKRQSL 177
Query: 165 SLDIVCFIVIDE 176
D + V+DE
Sbjct: 178 RADNIKMFVLDE 189
>CGD|CAL0004306 [details] [associations]
symbol:orf19.2797 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271
Pfam:PF04851 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004306
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG1061 EMBL:AACQ01000185
EMBL:AACQ01000184 RefSeq:XP_711739.1 RefSeq:XP_711763.1
ProteinModelPortal:Q59PU6 GeneID:3646640 GeneID:3646667
KEGG:cal:CaO19.10315 KEGG:cal:CaO19.2797 Uniprot:Q59PU6
Length = 623
Score = 133 (51.9 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 51/148 (34%), Positives = 73/148 (49%)
Query: 66 LETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI-RVHTDFEVEEY 124
+ TG+GKT++ LI +K G K L+ L T L+ Q YD I R++ D V
Sbjct: 62 MATGSGKTVVFSHLIP----LLKGKGTKTLV--LEHTQELIAQSYDKITRINPDLRV--- 112
Query: 125 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH 184
G++ +S+ +N +DV+V + Q L R + D I+IDECHHA
Sbjct: 113 ----GIEMAESRA---RLN-DDVIVASVQSLATNKRFTKFNPDDFKTIIIDECHHAVAP- 163
Query: 185 PYTKIMKEFYHKSDNKP---KVFGMTAS 209
Y KI+K F K+D K V G TA+
Sbjct: 164 TYQKILKHF--KADTKNTNINVIGFTAT 189
Score = 63 (27.2 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNSQ 521
+K ++ F+ GK +L V EG +PN +I K+ IQ GR R H +
Sbjct: 313 RKTIVADFKQGKFPVLCNVTVFTEGTDIPNIDSIILARPTKSKPLMIQMIGRGLRLHKEK 372
Score = 50 (22.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 29/107 (27%), Positives = 48/107 (44%)
Query: 1069 LGDSVLKYAVSCHLFLTY---PKKHEGQL----SARRSWAVCNSTLHKLGTDRKLQGYIR 1121
L ++VLK ++ HL L Y K+++ L + VC + L K G D + I
Sbjct: 250 LYNAVLKAGINEHLLLAYMELEKEYKSTLIFCINVEHCREVC-ALLQKQGVDARY--VIS 306
Query: 1122 DSAFDPRRW-VAPGQLSLRPVPCECGVDT--LEVP-LDGKFFTQDTK 1164
+++ R+ VA + PV C V T ++P +D + TK
Sbjct: 307 ETSNSERKTIVADFKQGKFPVLCNVTVFTEGTDIPNIDSIILARPTK 353
Score = 38 (18.4 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 15/69 (21%), Positives = 29/69 (42%)
Query: 297 KDMDDK--HKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354
KD D K + + K + H + Y + L Y++ I V +E C + ++
Sbjct: 243 KDYDPKALYNAVLKAGINEHLLLAY----MELEKEYKSTLIFCINVEHCREVCALLQKQG 298
Query: 355 LQCKYFLEE 363
+ +Y + E
Sbjct: 299 VDARYVISE 307
>UNIPROTKB|Q59PU6 [details] [associations]
symbol:CaO19.10315 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271
Pfam:PF04851 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004306
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG1061 EMBL:AACQ01000185
EMBL:AACQ01000184 RefSeq:XP_711739.1 RefSeq:XP_711763.1
ProteinModelPortal:Q59PU6 GeneID:3646640 GeneID:3646667
KEGG:cal:CaO19.10315 KEGG:cal:CaO19.2797 Uniprot:Q59PU6
Length = 623
Score = 133 (51.9 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 51/148 (34%), Positives = 73/148 (49%)
Query: 66 LETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI-RVHTDFEVEEY 124
+ TG+GKT++ LI +K G K L+ L T L+ Q YD I R++ D V
Sbjct: 62 MATGSGKTVVFSHLIP----LLKGKGTKTLV--LEHTQELIAQSYDKITRINPDLRV--- 112
Query: 125 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH 184
G++ +S+ +N +DV+V + Q L R + D I+IDECHHA
Sbjct: 113 ----GIEMAESRA---RLN-DDVIVASVQSLATNKRFTKFNPDDFKTIIIDECHHAVAP- 163
Query: 185 PYTKIMKEFYHKSDNKP---KVFGMTAS 209
Y KI+K F K+D K V G TA+
Sbjct: 164 TYQKILKHF--KADTKNTNINVIGFTAT 189
Score = 63 (27.2 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNSQ 521
+K ++ F+ GK +L V EG +PN +I K+ IQ GR R H +
Sbjct: 313 RKTIVADFKQGKFPVLCNVTVFTEGTDIPNIDSIILARPTKSKPLMIQMIGRGLRLHKEK 372
Score = 50 (22.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 29/107 (27%), Positives = 48/107 (44%)
Query: 1069 LGDSVLKYAVSCHLFLTY---PKKHEGQL----SARRSWAVCNSTLHKLGTDRKLQGYIR 1121
L ++VLK ++ HL L Y K+++ L + VC + L K G D + I
Sbjct: 250 LYNAVLKAGINEHLLLAYMELEKEYKSTLIFCINVEHCREVC-ALLQKQGVDARY--VIS 306
Query: 1122 DSAFDPRRW-VAPGQLSLRPVPCECGVDT--LEVP-LDGKFFTQDTK 1164
+++ R+ VA + PV C V T ++P +D + TK
Sbjct: 307 ETSNSERKTIVADFKQGKFPVLCNVTVFTEGTDIPNIDSIILARPTK 353
Score = 38 (18.4 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 15/69 (21%), Positives = 29/69 (42%)
Query: 297 KDMDDK--HKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354
KD D K + + K + H + Y + L Y++ I V +E C + ++
Sbjct: 243 KDYDPKALYNAVLKAGINEHLLLAY----MELEKEYKSTLIFCINVEHCREVCALLQKQG 298
Query: 355 LQCKYFLEE 363
+ +Y + E
Sbjct: 299 VDARYVISE 307
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 112 (44.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 34/102 (33%), Positives = 50/102 (49%)
Query: 416 LCIIFVERIIAAKVVERFVK-KVPFLTH-LTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473
LC ++ I V+ K KV +LT + A T S+ D + K + E+++ FR G
Sbjct: 256 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD-MPQKERDEIMKEFRAG 314
Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
+ +L TDV G+ V S VI +DLP YI GR+
Sbjct: 315 QSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 356
Score = 72 (30.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 30/129 (23%), Positives = 57/129 (44%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
I Q + + K R+ IA ++G GKT A I I Q++ + + ++ L+PT L
Sbjct: 52 IQQRSITPIVKGRDVIAQAQSGTGKT--ATFSIS-ILQSLDTTLRETQVLCLSPTRELAV 108
Query: 108 QQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
Q VI D + + G + + ++ ++ TP + D +++ L
Sbjct: 109 QIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQH-IVSGTPGRVFDMIKRRVLRTR 167
Query: 168 IVCFIVIDE 176
+ +V+DE
Sbjct: 168 AIKMLVLDE 176
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 97 (39.2 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 451 STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510
S T + T + ++ L S R G ++L ATD+ G+ VP+ S VI F++ ++ SY
Sbjct: 648 SVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTH 707
Query: 511 SRGR 514
GR
Sbjct: 708 RIGR 711
Score = 95 (38.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 39/143 (27%), Positives = 67/143 (46%)
Query: 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFK------KLII 97
P Q +A + R+ I V TG+GKT ++ L+ IA+ + + F+ I
Sbjct: 369 PTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAI 428
Query: 98 FLAPTVHLVHQQYDV-IRVHTD---FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
LAPT L QQ ++ + T+ F V G +E Q + N ++++ TP
Sbjct: 429 VLAPTRELA-QQIEIEAKKFTEPLGFNVVSIVGGHSFEE---QAYSLR-NGAEIIIATPG 483
Query: 154 ILLDALRKAFLSLDIVCFIVIDE 176
L+D + + L L C++++DE
Sbjct: 484 RLVDCIERRMLVLSQCCYVIMDE 506
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 117 (46.2 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 23/74 (31%), Positives = 46/74 (62%)
Query: 463 QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQF 522
+ ++++R GK ++L ATDV +G+ PN +VI +D+P + +Y+ GR + N++
Sbjct: 467 RSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKG 526
Query: 523 I---LMLERSERSV 533
+ L+ + +E+SV
Sbjct: 527 LATTLINKTTEQSV 540
Score = 72 (30.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 40/177 (22%), Positives = 76/177 (42%)
Query: 60 RNTIAVLETGAGKTMIAVM------LIKDIAQAIKSN-GFKKLIIFLAPTVHLVHQQYDV 112
R+ I + TG+GKT++ V+ L ++ + + N G LII P+ L Q +++
Sbjct: 215 RDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLII--CPSRELAKQTHEI 272
Query: 113 IRVHTDF-------EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
I+ ++ E+ G+ S+ ++V TP L+D L K L+
Sbjct: 273 IQHYSKHLQACGMPEIRSCLAMGGLPV--SEALDVISRGVHIVVATPGRLMDMLDKKILT 330
Query: 166 LDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAM 220
LD+ ++ +DE G + + F+ K + +F T ++ SA+
Sbjct: 331 LDMCRYLCMDEADRMIDMGFEEDVRTIFSFF-KGQRQTLLFSATMPKKIQNFARSAL 386
>ZFIN|ZDB-GENE-060623-1 [details] [associations]
symbol:ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
52" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060623-1
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11056 HOVERGEN:HBG051332 KO:K14779
OrthoDB:EOG4XKV6Q EMBL:BC117610 IPI:IPI00627696
RefSeq:NP_001037780.1 UniGene:Dr.13799 ProteinModelPortal:Q1ECZ5
STRING:Q1ECZ5 GeneID:407696 KEGG:dre:407696 NextBio:20818558
Uniprot:Q1ECZ5
Length = 606
Score = 103 (41.3 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 37/122 (30%), Positives = 63/122 (51%)
Query: 59 RRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY-DVIRVH 116
+R +A TG+GKTM + L+ + Q + + GF+ LII +PT L Q + +++++
Sbjct: 204 KREILACAPTGSGKTMAFCLPLLAHLRQPL-NKGFRALII--SPTRELATQTHRELLKLS 260
Query: 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK--AFLSLDIVCFIVI 174
+ KGV E + K K D+LV TP L+ L + ++L V ++V+
Sbjct: 261 EGVGFRVHMINKGV-EAVKKYGPKSAKKFDILVTTPNRLIYLLNQDPPAINLSSVEWLVV 319
Query: 175 DE 176
DE
Sbjct: 320 DE 321
Score = 86 (35.3 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 459 TPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
T + + V+ SFR GK+ +L T ++ G+ + VI +D P + YI GR
Sbjct: 449 TQQQRDNVVSSFRSGKIWVLICTALLARGIDFKGINLVINYDFPTSAVEYIHRIGR 504
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 111 (44.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNS 520
+ +E+FR GK ++L ATDV +G+ P +VI +D+P+ + +Y+ GR R N+
Sbjct: 473 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT 529
Score = 78 (32.5 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 42/178 (23%), Positives = 72/178 (40%)
Query: 60 RNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFKKLI----IFLAPTVHLVHQQYDVIR 114
R+ I + TG+GKT++ + +I + K F K + + P+ L Q + ++
Sbjct: 219 RDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILE 278
Query: 115 VHTDFEVEEY---------YGAKGVDEWDSQCWQKEINKNDV--LVMTPQILLDALRKAF 163
+ E+ G V E Q E ++ V +V TP L+D L+K
Sbjct: 279 YYCRLLQEDSSPLLRCALCIGGMSVKE------QMETIRHGVHMMVATPGRLMDLLQKKM 332
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAM 220
+SLDI ++ +DE I F Y K + +F T ++ SA+
Sbjct: 333 VSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL 390
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 111 (44.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNS 520
+ +E+FR GK ++L ATDV +G+ P +VI +D+P+ + +Y+ GR R N+
Sbjct: 473 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT 529
Score = 78 (32.5 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 42/178 (23%), Positives = 72/178 (40%)
Query: 60 RNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFKKLI----IFLAPTVHLVHQQYDVIR 114
R+ I + TG+GKT++ + +I + K F K + + P+ L Q + ++
Sbjct: 219 RDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILE 278
Query: 115 VHTDFEVEEY---------YGAKGVDEWDSQCWQKEINKNDV--LVMTPQILLDALRKAF 163
+ E+ G V E Q E ++ V +V TP L+D L+K
Sbjct: 279 YYCRLLQEDSSPLLRCALCIGGMSVKE------QMETIRHGVHMMVATPGRLMDLLQKKM 332
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAM 220
+SLDI ++ +DE I F Y K + +F T ++ SA+
Sbjct: 333 VSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL 390
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 111 (44.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNS 520
+ +E+FR GK ++L ATDV +G+ P +VI +D+P+ + +Y+ GR R N+
Sbjct: 473 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT 529
Score = 78 (32.5 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 42/178 (23%), Positives = 72/178 (40%)
Query: 60 RNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFKKLI----IFLAPTVHLVHQQYDVIR 114
R+ I + TG+GKT++ + +I + K F K + + P+ L Q + ++
Sbjct: 219 RDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILE 278
Query: 115 VHTDFEVEEY---------YGAKGVDEWDSQCWQKEINKNDV--LVMTPQILLDALRKAF 163
+ E+ G V E Q E ++ V +V TP L+D L+K
Sbjct: 279 YYCRLLQEDSSPLLRCALCIGGMSVKE------QMETIRHGVHMMVATPGRLMDLLQKKM 332
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAM 220
+SLDI ++ +DE I F Y K + +F T ++ SA+
Sbjct: 333 VSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL 390
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 111 (44.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNS 520
+ +E+FR GK ++L ATDV +G+ P +VI +D+P+ + +Y+ GR R N+
Sbjct: 473 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT 529
Score = 78 (32.5 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 42/178 (23%), Positives = 72/178 (40%)
Query: 60 RNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFKKLI----IFLAPTVHLVHQQYDVIR 114
R+ I + TG+GKT++ + +I + K F K + + P+ L Q + ++
Sbjct: 219 RDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILE 278
Query: 115 VHTDFEVEEY---------YGAKGVDEWDSQCWQKEINKNDV--LVMTPQILLDALRKAF 163
+ E+ G V E Q E ++ V +V TP L+D L+K
Sbjct: 279 YYCRLLQEDSSPLLRCALCIGGMSVKE------QMETIRHGVHMMVATPGRLMDLLQKKM 332
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAM 220
+SLDI ++ +DE I F Y K + +F T ++ SA+
Sbjct: 333 VSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL 390
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 111 (44.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA-RQHNS 520
+ +E+FR GK ++L ATDV +G+ P +VI +D+P+ + +Y+ GR R N+
Sbjct: 473 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT 529
Score = 78 (32.5 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 42/178 (23%), Positives = 72/178 (40%)
Query: 60 RNTIAVLETGAGKTMIAVM-LIKDIAQAIKSNGFKKLI----IFLAPTVHLVHQQYDVIR 114
R+ I + TG+GKT++ + +I + K F K + + P+ L Q + ++
Sbjct: 219 RDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILE 278
Query: 115 VHTDFEVEEY---------YGAKGVDEWDSQCWQKEINKNDV--LVMTPQILLDALRKAF 163
+ E+ G V E Q E ++ V +V TP L+D L+K
Sbjct: 279 YYCRLLQEDSSPLLRCALCIGGMSVKE------QMETIRHGVHMMVATPGRLMDLLQKKM 332
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEF-YHKSDNKPKVFGMTASPVVRKGVSSAM 220
+SLDI ++ +DE I F Y K + +F T ++ SA+
Sbjct: 333 VSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSAL 390
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 99 (39.9 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 39/139 (28%), Positives = 70/139 (50%)
Query: 45 IPRIYQLKVFEVAKR-RNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
+P Q++ V R +A TG+GKT+ + L+ + Q + + GF+ LII +PT
Sbjct: 181 VPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFCIPLLTHLKQPM-NKGFRALII--SPT 237
Query: 103 VHLVHQQY-DVIRVH--TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
L Q + +++++ T F + A E + K K D+LV TP L+ L
Sbjct: 238 RELASQTHRELVKLADGTGFRIHMIQKAS---EAAKKFGPKSSRKFDILVTTPNRLIYLL 294
Query: 160 RKAFLSLDI--VCFIVIDE 176
++ ++D+ V ++V+DE
Sbjct: 295 KQDPPAIDLTSVEWLVVDE 313
Score = 90 (36.7 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 459 TPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
T + + V+ SFR GK+ +L T ++ G+ + VI +DLP + YI GR
Sbjct: 441 TQQQRDNVVHSFRAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEYIHRIGR 496
WARNING: HSPs involving 174 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1590 1547 0.00079 125 3 11 22 0.39 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 424
No. of states in DFA: 633 (67 KB)
Total size of DFA: 665 KB (2290 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 133.20u 0.10s 133.30t Elapsed: 00:00:06
Total cpu time: 133.26u 0.10s 133.36t Elapsed: 00:00:06
Start: Sat May 11 06:45:17 2013 End: Sat May 11 06:45:23 2013
WARNINGS ISSUED: 2