Query 000384
Match_columns 1590
No_of_seqs 516 out of 4421
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 16:02:58 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000384.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_164-167//hhsearch_pdb/000384hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qvw_A GLP_546_48378_50642; di 1.0 1 1 585.6 33.4 516 719-1353 17-755 (756)
2 2ykg_A Probable ATP-dependent 1.0 1 1 401.4 38.4 465 40-528 8-514 (696)
3 4gl2_A Interferon-induced heli 1.0 1 1 395.7 35.6 463 41-529 3-519 (699)
4 4a2w_A RIG-I, retinoic acid in 1.0 1 1 384.5 43.6 455 42-528 245-748 (936)
5 4a2q_A RIG-I, retinoic acid in 1.0 1 1 384.3 44.0 454 42-529 245-749 (797)
6 4a2p_A RIG-I, retinoic acid in 1.0 1 1 381.8 42.2 454 41-528 3-507 (556)
7 3tbk_A RIG-I helicase domain; 1.0 1 1 378.4 40.6 458 43-530 2-508 (555)
8 1wp9_A ATP-dependent RNA helic 1.0 1 1 357.9 39.7 434 39-526 3-471 (494)
9 3eiq_A Eukaryotic initiation f 1.0 1 1 330.5 25.4 323 43-530 60-388 (414)
10 1xti_A Probable ATP-dependent 1.0 1 1 329.2 33.7 321 44-528 29-356 (391)
No 1
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=1.00 E-value=1 Score=585.64 Aligned_cols=516 Identities=19% Similarity=0.220 Sum_probs=370.7
Q ss_pred CCCCEEEEECCCCCCCCCCCEEEEEEECCEEEEEEE-CCCCC-CCCHHHHHHHHHHHHHHHHHHHHHC---HHC--CCCC
Q ss_conf 344347851355687678821447631653699971-47421-1499999999999999999963100---111--3588
Q 000384 719 IYSGFVLLIESELDNDVGNFELELYLVSKTVKATVS-SSGQV-HLDADQMSKAKCFQELFFNGLFGKL---FVK--SKSS 791 (1590)
Q Consensus 719 ~~~~~~ll~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~-~l~~~~l~~~~~f~~~~f~~i~~~~---~~~--~~~~ 791 (1590)
.+..+.+++.++||. ...|++|...|.+.+++. .+|.+ .++.+|+..+++||.++|+.++... +.. ..+.
T Consensus 17 ~~~~~~~l~~~~l~~---~~~f~~~~~~g~~~v~v~~~~~~~~~l~~~q~~~~~~Fq~~lf~~~l~~~~~~~~~~~~~~~ 93 (756)
T 2qvw_A 17 GPSHWLLLLDTHLGT---LPGFKVSAGRGLPAAEVYFEAGPRVSLSRTDATIVAVYQSILFQLLGPTFPASWTEIGATMP 93 (756)
T ss_dssp CEEEEEEEESSCCCS---CCCEEECSBTTBCCEEEECCBCCCCCCCHHHHHHHHHHHHHHHHHHCTTSCSCHHHHHHTCC
T ss_pred CCCEEEEEECCCCCC---CCCCEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
T ss_conf 851031124377888---89842255789556899862388656699999999999999999870233202330365433
Q ss_pred CCCCHHHCCCCCCCCCCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8720020123567889983-189981222356899983123576455530246765201122222489999999998999
Q 000384 792 GSREFFLKRETNSLWSPSY-MYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSP 870 (1590)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~-~ylivPl~~~~~~~~~~~~IDw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (1590)
. .+|.+ ++=..+++.. .||+||+... ...|||+.|... ....+ +...
T Consensus 94 ~-~~~~~--~~~~~~~~~~~~Yll~Pl~~~------~~~iDw~~v~~s---~~~~~----------~~~~---------- 141 (756)
T 2qvw_A 94 H-NEYTF--PRFISNPPQFATLAFLPLLSP------TSPLDLRALMVT---AQLMC----------DAKR---------- 141 (756)
T ss_dssp G-GGSSS--TTCCCCCSCCCCEEEEEESST------TCCCCSHHHHHH---HHHHH----------TCCC----------
T ss_pred C-CCCCC--CCCCCCCCCCCEEEEEECCCC------CCCEEHHHHHHH---HHHCC----------CCCC----------
T ss_conf 2-10134--212577865443899967898------884220653323---44203----------5678----------
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCC-CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 9777788731012478767123358399931499-248999861799889999999999982399998654053013799
Q 000384 871 CKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTG-RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPG 949 (1590)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~l~~~vV~~~~~~-~~Y~v~~i~~d~tp~s~f~~~~~~~~~ty~~Yy~~k~~~~i~~~~ 949 (1590)
..-.++++....+.+.|++|+++|+| +.|+|.+|++|+||.|+|+.. +.+.||.+||+++||+.|.+++
T Consensus 142 --------~~~~~~d~~~~~~~l~g~vV~t~ynn~r~Y~i~~id~d~~P~S~F~~~--~~~~Ty~dYYk~ky~i~I~d~~ 211 (756)
T 2qvw_A 142 --------LSDEYTDYSTLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRA--NESITYMRYYATAHNIHLRAAD 211 (756)
T ss_dssp --------GGGC------CTTTSTTCEEEETTTTTEEEEEEEEEEEEETTSEEEET--TEEEEHHHHHHHTTCCCCSCTT
T ss_pred --------CCCCCCCCHHHHHHHCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCC--CCCCCHHHHHHHHCCCCCCCCC
T ss_conf --------851103423568882798895588885389998764799988767889--9987799999987396224699
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEECCCCHHHHH--HHHHCHHHHHHHHHHHHH
Q ss_conf 850984035775335655679999988988887888887235416534054034088999--982007999999998829
Q 000384 950 QPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVK--SLYLLPSVMQRLESLMLA 1027 (1590)
Q Consensus 950 QPlL~~~~~~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~~~p~~~~~--~~~~lPsi~~rl~~~l~a 1027 (1590)
||||.++++.+.+|+..+.. + ......+..++||||+|.++++|+++|+ ++.+||||+||||++++|
T Consensus 212 QPLL~~~~~~~~~~~r~~~~---~--------~~~~~~~~~v~L~PELC~vt~Lp~sl~~~~~~~~lPsil~rie~ll~a 280 (756)
T 2qvw_A 212 LPLVAAVRLDDLKDHQIPAP---G--------SWDDLAPKLRFLPPELCLLLPDEFDLIRVQALQFLPEIAKHICDIQNT 280 (756)
T ss_dssp SEEEEEEETTTTTTCCCCST---T--------C-CCSCSSCEEECTTTCEECCTTSCTTHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCCCC---C--------CCCCCCCCCEEECHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87288873233334345555---5--------545677653010778820136863478887887718999999999999
Q ss_pred HH-HHHHHHCCCCCC-CCCHHHHHHHHCCCCCCCC---------------------CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99-989980015789-9996799995347888999---------------------995034424236676899999983
Q 000384 1028 SQ-LREEINCHSRNF-HIPSSLILEALTTLGCCES---------------------FSMERLELLGDSVLKYAVSCHLFL 1084 (1590)
Q Consensus 1028 ~~-l~~~l~~~~~~~-~~~~~lll~AlT~~s~~~~---------------------~n~ErLE~LGDs~Lk~~~s~~l~~ 1084 (1590)
.+ ++. .+... .| +..+++|||+++|.+. .|||||||||||||++++|.+||.
T Consensus 281 ~~al~~----~~p~~~~i-~~~~leAlT~~~~~~~g~~~~~~~~~~AlTh~s~~~~~nnERLEfLGDavL~~~vs~~L~~ 355 (756)
T 2qvw_A 281 ICALDK----SFPDCGRI-GGERYFAITAGLRLDQGRGRGLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLLC 355 (756)
T ss_dssp HHHHGG----GSCCCSCC-HHHHHHHHHHHHBCSCCBTTBSBTTEEECBGGGBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----CCCCCCCC-CHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999985----28862446-7899998756541220134320344441456455678872799999999999999999999
Q ss_pred HCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 09999942568988774600999999782797432123557778644798667788788789876654689964345542
Q 000384 1085 TYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTK 1164 (1590)
Q Consensus 1085 ~~p~~~eg~Ls~~r~~~vsN~~L~~~a~~~gL~~~i~~~~f~~~~W~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1164 (1590)
+||+.+||.||.+|+.+|||.+|+++|+++||++||+..++..
T Consensus 356 ~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e~------------------------------------- 398 (756)
T 2qvw_A 356 LFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLV------------------------------------- 398 (756)
T ss_dssp HSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC--------------------------------------
T ss_pred HCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHCCCCCCC-------------------------------------
T ss_conf 7899984389999999848158999999868078853489977-------------------------------------
Q ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHCCCCC-C--------CC----------------
Q ss_conf 011776789852235421456999988786444-675679999999278766-5--------50----------------
Q 000384 1165 VVVGKPCDMGHRWMGSKTIADCAEALIGAYYVG-GGLIAALYMMKWLGIDAD-L--------EV---------------- 1218 (1590)
Q Consensus 1165 ~~~~~~~~~~~~~~~~K~iAD~vEAliGA~~~~-~G~~~a~~~~~~l~~~~~-~--------~~---------------- 1218 (1590)
..+|.+||+|||+|||+|+| +|++.|..|+..+-.+.. . ++
T Consensus 399 -------------~~~~ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~~ia~ 465 (756)
T 2qvw_A 399 -------------AKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTVGSACPDAVTKASKRVCMGEAGAH 465 (756)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC---CCCHHHHHHHHHHHTSCCCHH
T ss_pred -------------CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHH
T ss_conf -------------7622778699998486013555769999999999876643013321235823789999986165022
Q ss_pred ---------------------------------------HHHH------H------------------HHH------CC-
Q ss_conf ---------------------------------------0123------3------------------310------12-
Q 000384 1219 ---------------------------------------SLVD------D------------------CIT------RA- 1228 (1590)
Q Consensus 1219 ---------------------------------------~~~~------~------------------~~~------~~- 1228 (1590)
.+.. . +.. ..
T Consensus 466 ~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~~~~~~f~~w~g~~~~~~~~~~~~~~~~~ks~~d~~~al~~g~~l~~~g 545 (756)
T 2qvw_A 466 EFRSLVDYACEQGISVFCSSRVSTMFLERLRDIPAEDMLDWYRLGIQFSHRSGLSGPGGVVSVIDIMTHLARGLWLGSPG 545 (756)
T ss_dssp HHHHHHHHTTTTTCCCBSSSHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTSSCSSCCSCHHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCC
T ss_conf 26666667764011000005789999986404655767765077600035455456642110565898862376204665
Q ss_pred ------------------CC----C-C-CCC--------------CHHHHHHHHHHHCCCCCC-----------------
Q ss_conf ------------------21----2-3-677--------------768899999981984388-----------------
Q 000384 1229 ------------------SL----R-S-YVP--------------RINEIKDIESKIGYEFTV----------------- 1253 (1590)
Q Consensus 1229 ------------------~~----~-~-~~~--------------~~~~~~~le~~lgy~F~~----------------- 1253 (1590)
+. . . ..| ....+..+|++|||+|+|
T Consensus 546 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~ 625 (756)
T 2qvw_A 546 FYVEQQTDKNESACPPTIPVLYIYHRSVQCPVLYGSLTETPTGPVASKVLALYEKILAYESSGGSKHIAAQTVSRSLAVP 625 (756)
T ss_dssp EECCC---------CCEEECCTTTTSSSCCTTTTCCCC---CTTTHHHHHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 32122222213346667860333023334753234334565210346679999999588865763136676654310234
Q ss_pred ---------HHHHHHHHCCCCCCCCCCHH----------------HHHHHHCCCCHHHHHHHHHHHHCCCCCC----CCC
Q ss_conf ---------88999988168988986617----------------8877711369477998999998099999----978
Q 000384 1254 ---------KFLLQEAITHASVQEFYCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFPKPG----ETT 1304 (1590)
Q Consensus 1254 ---------~~LL~eAlTH~S~~~~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~ 1304 (1590)
+.||.+||||+| || +||+.+|..++|.++.++..++.-.... +-+
T Consensus 626 i~~~~~~~~~~LL~~AlTH~S------neRLEfLGDaVL~l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg 699 (756)
T 2qvw_A 626 IPSGTIPFLIRLLQIALTPHV------YQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFP 699 (756)
T ss_dssp CCSSCHHHHHHHHHHHHSTGG------GHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSC
T ss_pred CCCCCCCCCHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_conf 333434243899999805754------05798778999999999999972899986799999999958708999999865
Q ss_pred ---------CCCCCCCCCCHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf ---------9999999872245689998760263279885889999886214646899
Q 000384 1305 ---------DSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPD 1353 (1590)
Q Consensus 1305 ---------~~~~~~~~pk~l~D~~Ea~iGAi~lDsg~~~~~~~~~~~~~l~~~i~~~ 1353 (1590)
+.......+|+++|+|||++||||+|+|+ +.+++|+.+++.+.++.+
T Consensus 700 ~~L~~~l~~~~~e~~~~~kilaD~~EAliGAiylD~G~--~~a~~~v~~~~~~~l~~~ 755 (756)
T 2qvw_A 700 SVVSEVIIESHPKIQPDSKVYGDTFEAILAAILLACGE--EAAGAFVREHVLPQVVAD 755 (756)
T ss_dssp THHHHHHHHHSTTCCTTCSHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHTGGGCCCC
T ss_pred CCHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHCC
T ss_conf 10999974086121478529999999999999996799--999999999999886212
No 2
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=1.00 E-value=1 Score=401.35 Aligned_cols=465 Identities=23% Similarity=0.337 Sum_probs=289.8
Q ss_pred CCCCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC-
Q ss_conf 8879999488999999972-48989990899839999999999999997707997299999357555999999998616-
Q 000384 40 NSINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT- 117 (1590)
Q Consensus 40 ~~~~~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~- 117 (1590)
.-..+.||+||.++++.++ ++|+|+++|||+|||+++++++.+.+.... .+.+.+++|++||++|+.||++++++++
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~ 86 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-QGQKGKVVFFANQIPVYEQNKSVFSKYFE 86 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-TTCCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 24778866999999999971898899949996099999999999998475-67787499997888899999999999825
Q ss_pred --CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf --98358986688877302278898307896999859999999972176-765421899846410038990899999997
Q 000384 118 --DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1590)
Q Consensus 118 --~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~-~l~~i~LIIiDEaH~~~~~~~~~~imk~~~ 194 (1590)
++++..++|+...... |.....+++|+|+||++|++.+.++.+ .+.++++||+||||++.++++|..+|..++
T Consensus 87 ~~~~~v~~~~g~~~~~~~----~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l 162 (696)
T 2ykg_A 87 RHGYRVTGISGATAENVP----VEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 162 (696)
T ss_dssp TTTCCEEEECSSSCSSSC----HHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCC----HHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 388249999588665435----8985259999997889999998607666403131899928875467653899999999
Q ss_pred HC-----CCCCCCEEEEECCCCCCCCCCCHHCHHHHHHHHHHHCCCEEEEEC--CHHHHHHCCCCCCEEEEECCCCCC--
Q ss_conf 30-----899980999805577567888800099999999965198067304--512262205686133576358877--
Q 000384 195 HK-----SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE--DKTEMEVFVPSAKESCRFYDQSKF-- 265 (1590)
Q Consensus 195 ~~-----~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~s~i~t~~--~~~~l~~~~~~p~~~~~~y~~~~~-- 265 (1590)
.. ....|+++||||||..++. .........+..+...++....... ....+..++..|......+.....
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~~~~~-~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVGVGDA-KTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCCCSSC-CSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHHCCCCCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf 97631357777869997276566765-34899999999999746984675111343778755489811588557666773
Q ss_pred CCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
Q ss_conf 654113---567875532104578988534321000003589999999---------------99999999999983145
Q 000384 266 CGSDLK---GKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQL---------------SDYHAKILYCLDELGLI 327 (1590)
Q Consensus 266 ~~~~l~---~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l---------------~~~~~~~~~~~~~lG~~ 327 (1590)
+...+. ..++.....+......+.......+ ...........+ ......+......+...
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREF--GTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCS--SSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999987630355553--41449999999988888863124045667889988999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHCC---CCCCCCC--CCCCCCCCHHHHH
Q ss_conf 799999999999676778888986546999999999999983006861-011002---4677210--1137999999999
Q 000384 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLA-DKIFLD---FGFDYSK--AVDLGYISTKLHE 401 (1590)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~---~~~~~~~--~~~~~~~s~Kv~~ 401 (1590)
.. .... ...... .....++.............. ...... ....... .......++|+..
T Consensus 320 ~~--~~~i--~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~ 384 (696)
T 2ykg_A 320 ND--ALII--SEHARM-----------KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLED 384 (696)
T ss_dssp HH--HHHH--HHHSCH-----------HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHH
T ss_pred HH--HHHC--CCHHHH-----------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 67--7750--130659-----------99999999999988641553688999998888788998874078878979999
Q ss_pred HHHHHHHC-CCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC--CCCCCHHHHHHHHHHHCC-CCCEE
Q ss_conf 99999840-999981899998009899999999862999987069999757888--798899999999998308-98219
Q 000384 402 LLQLFLSF-GKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS--VDALTPKVQKEVLESFRG-GKVNL 477 (1590)
Q Consensus 402 L~~lL~~~-~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~--~~~l~~~~q~~vl~~Fr~-g~~ni 477 (1590)
|.+++... ...++.++||||+++.++..|++.|...+.+.++++..++|.+.. +.+|+.++|.+++++|++ |++++
T Consensus 385 L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~v 464 (696)
T 2ykg_A 385 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI 464 (696)
T ss_dssp HHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSC
T ss_pred HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 99999998524899849999480799999999997388755301269971587755467899999999999873697137
Q ss_pred EEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 997243223545788638998069999779999721123348629997312
Q 000384 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528 (1590)
Q Consensus 478 LVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~gs~~i~lv~~ 528 (1590)
||||+++++|||+|+|++||+||+|++..+|+||+|| ||.....++++..
T Consensus 465 LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~~g~~~~l~~ 514 (696)
T 2ykg_A 465 LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTS 514 (696)
T ss_dssp SEEEESSCCC---CCCSEEEEESCC--CCCC----------CCCEEEEEES
T ss_pred EEEECHHHCCCCCCCCCEEEEECCCCCHHHHHHHHCC-CCCCCCEEEEEEC
T ss_conf 9982216408767447889993798988999885264-7677862999966
No 3
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=1.00 E-value=1 Score=395.67 Aligned_cols=463 Identities=24% Similarity=0.340 Sum_probs=306.7
Q ss_pred CCCCCCCHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH-HHHHHHHCC
Q ss_conf 8799994889999999724-89899908998399999999999999977079972999993575559999-999986169
Q 000384 41 SINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ-YDVIRVHTD 118 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~l~-~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq-~~~i~~~~~ 118 (1590)
...++||+||.++++.++. +|+|+++|||+|||+++++++.+.+......+..++++|++|+++|+.|| +++++.+++
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 77777248899999999837999998699986899999999999984645578880999979999999999999999717
Q ss_pred --CCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHH------HHCCCCCCCEEEEEEECCCCCCCCCCHHHHH
Q ss_conf --83589866888773022788983078969998599999999------7217676542189984641003899089999
Q 000384 119 --FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL------RKAFLSLDIVCFIVIDECHHATGNHPYTKIM 190 (1590)
Q Consensus 119 --~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L------~~~~~~l~~i~LIIiDEaH~~~~~~~~~~im 190 (1590)
+++..++|+...... |.......+|+|+||++|.+.+ ..+.+.+.++++||+||||++...+.|..++
T Consensus 83 ~~~~v~~~~g~~~~~~~----~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKIS----FPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp TTSCEEEEC----CCCC----HHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred CCCEEEEEECCCCHHHH----HHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCEECCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 67149998578322157----77652379999989899999974343343351212547689997731147665399999
Q ss_pred HHHHHCC-------------CCCCCEEEEECCCCCCCCCCCHHCHHHHHHHHHHHCCC-EEEEECC-HHHHHHCCCCCCE
Q ss_conf 9997308-------------99980999805577567888800099999999965198-0673045-1226220568613
Q 000384 191 KEFYHKS-------------DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS-QVFTIED-KTEMEVFVPSAKE 255 (1590)
Q Consensus 191 k~~~~~~-------------~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~s-~i~t~~~-~~~l~~~~~~p~~ 255 (1590)
..++... .+.|++++|||||..++. .........+..+...++. .+.++.. ...+..++..|..
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~-~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~ 237 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGA-TKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCK 237 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSC-CSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEE
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCE
T ss_conf 99998543145544344567888879974366554554-46799999999998516987788524856777643689865
Q ss_pred EEEECCCCCCCC-CCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 357635887765-41135678755321--------------045789885343210000035899999999999999999
Q 000384 256 SCRFYDQSKFCG-SDLKGKLEVSWSKF--------------DASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYC 320 (1590)
Q Consensus 256 ~~~~y~~~~~~~-~~l~~~l~~~~~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (1590)
....+....... ......+....... ...+..+..... .............+.. .......
T Consensus 238 ~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~-~~~~~~~ 313 (699)
T 4gl2_A 238 KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAA---KEGNRKERVCAEHLRK-YNEALQI 313 (699)
T ss_dssp EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHH---HHTCTTTHHHHHHHHH-HHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf 99974666677179999999999998855585221160678899999988887---7532155899999887-8788988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 998314579999999999967677888--------898654699999999999998300686101100246772101137
Q 000384 321 LDELGLICAYEAVKICLEKVLKAQEEC--------EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDL 392 (1590)
Q Consensus 321 ~~~lG~~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 392 (1590)
...++.+.+...+.............. ....................+..... ..
T Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-----------------~~ 376 (699)
T 4gl2_A 314 NDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAE-----------------NP 376 (699)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHT-----------------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-----------------CC
T ss_conf 8788889899999999999875310222333210112362689999989887899999864-----------------67
Q ss_pred CCCCHHHHHHHHHHHH-CCCCC-CCEEEEEEEHHHHHHHHHHHHHHCCCCC--CEEEEEEECCCCCC--CCCCHHHHHHH
Q ss_conf 9999999999999984-09999-8189999800989999999986299998--70699997578887--98899999999
Q 000384 393 GYISTKLHELLQLFLS-FGKST-QVLCIIFVERIIAAKVVERFVKKVPFLT--HLTVAYLTGSTTSV--DALTPKVQKEV 466 (1590)
Q Consensus 393 ~~~s~Kv~~L~~lL~~-~~~~~-~~~~IIFv~~r~~a~~L~~~L~~~~~~~--~~~~~~l~G~~~~~--~~l~~~~q~~v 466 (1590)
...++|+..|.++|.. +...+ +.++||||+++.++..|++.|...+.+. ++++..+||.+.+. .+|+..+|.++
T Consensus 377 ~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~ 456 (699)
T 4gl2_A 377 EYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEV 456 (699)
T ss_dssp C----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf 77887999999999999714799981999979299999999999747332236864499977887667778899999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 998308982199972432235457886389980699997799997211233486299973122
Q 000384 467 LESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERS 529 (1590)
Q Consensus 467 l~~Fr~g~~niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~gs~~i~lv~~~ 529 (1590)
+++|++|++++||||+++++|||+|+|++||+||+|+|+.+|+||+|||||.|+.++++....
T Consensus 457 ~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g~~~~l~~~~~ 519 (699)
T 4gl2_A 457 ISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSG 519 (699)
T ss_dssp HHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSSCEEEEEEESS
T ss_pred HHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEECC
T ss_conf 999866997589974641268756348889994799998999887087889996699998178
No 4
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=384.47 Aligned_cols=455 Identities=24% Similarity=0.361 Sum_probs=300.2
Q ss_pred CCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---
Q ss_conf 79999488999999972-48989990899839999999999999997707997299999357555999999998616---
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~--- 117 (1590)
..++||+||.++++.++ ++|+|++++||+|||+++++++.+.+.... .+.+.+++|++|+++|+.||++++++++
T Consensus 245 ~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-AGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 789877999999999980998999969984599999999999997365-5689859999698999999999999971216
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC
Q ss_conf 98358986688877302278898307896999859999999972176-76542189984641003899089999999730
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~-~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~ 196 (1590)
++++..++|+...... +......++|+|+||++|.+.+.++.+ .+.++++||+||||++...++|..++..+...
T Consensus 324 ~~~v~~~~G~~~~~~~----~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 324 GYSVQGISGENFSNVS----VEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp TCCEEEECCC-----C----CHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCHHHH----HHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 9559999799631257----897416999999449999999871764533678799998731359986699999999998
Q ss_pred C----CCCCCEEEEECCCCCCCCCCCHHCHHHHHHHHHHHCCC-EEEEEC-CHHHHHHCCCCCCEEEEECCCCCCCC--C
Q ss_conf 8----99980999805577567888800099999999965198-067304-51226220568613357635887765--4
Q 000384 197 S----DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS-QVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCG--S 268 (1590)
Q Consensus 197 ~----~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~s-~i~t~~-~~~~l~~~~~~p~~~~~~y~~~~~~~--~ 268 (1590)
. ...+++++|||||..++. .........+..+...++. .+.+.. ....+..++..|......+....... .
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~-~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNA-KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTC-CSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HHCCCCCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHH
T ss_conf 63137886739986388554540-20899999999999854971553465448999875367762377336556757999
Q ss_pred CHHH---HHHHHHHHHH-------------------HHHHHHHHHHHHHHCCCHHH---------HHHHHHHHHHHHHHH
Q ss_conf 1135---6787553210-------------------45789885343210000035---------899999999999999
Q 000384 269 DLKG---KLEVSWSKFD-------------------ASLSKLQGSQLNCYKDMDDK---------HKTLRKQLSDYHAKI 317 (1590)
Q Consensus 269 ~l~~---~l~~~~~~~~-------------------~~~~~l~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~ 317 (1590)
.+.. .++.....+. ..+..+.... ....+... .......+.. ....
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~--~~~~l~~~~~~~~~~~~l~~~~~~l~~-~~~a 555 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKC--RLLQLEDKEEESRICRALFICTEHLRK-YNDA 555 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHH--HHCCCSCHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 9999999999999988766555320223322577999999999988--774055321035799999999999999-8888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 99999831457999999999996767788889865469999999999999830068610110024677210113799999
Q 000384 318 LYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397 (1590)
Q Consensus 318 ~~~~~~lG~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 397 (1590)
.......+.+.+...+............ ....... ...+. .....+.... ......++
T Consensus 556 l~i~~~~~~~~~~~~l~~~~~~~~~~~~-~~~e~~l---~~~~~-~~~~~l~~~~-----------------~~~~~~~~ 613 (936)
T 4a2w_A 556 LIISEDARIIDALSYLTEFFTNVKNGPY-TELEQHL---TAKFQ-EKEPELIALS-----------------KDETNENP 613 (936)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHTTC-CHHHHHH---HHHHH-HHHHHHHHHH-----------------TSTTCCCH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHH---HHHHH-HHHHHHHHHH-----------------HCCCCCCH
T ss_conf 7500204288899999999998763258-8789999---99899-9999999764-----------------05677897
Q ss_pred HHHHHHHHHHH-CCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--CCCCCCHHHHHHHHHHHCC-C
Q ss_conf 99999999984-099998189999800989999999986299998706999975788--8798899999999998308-9
Q 000384 398 KLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT--SVDALTPKVQKEVLESFRG-G 473 (1590)
Q Consensus 398 Kv~~L~~lL~~-~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~--~~~~l~~~~q~~vl~~Fr~-g 473 (1590)
|+..|.++|.. +....+.++||||+++.++..|.+.|...+.+.++++.+++|.+. .+.+|+..+|.+++++|++ |
T Consensus 614 K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 614 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp HHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999999853589974999969799999999998637353666616996578765678889999999999863159
Q ss_pred CCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCC-CEEEEEECC
Q ss_conf 8219997243223545788638998069999779999721123348-629997312
Q 000384 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN-SQFILMLER 528 (1590)
Q Consensus 474 ~~niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~g-s~~i~lv~~ 528 (1590)
++++||||+++++|||+|+|++||+||.|+|+.+|+||+|| ||.. +.+++++..
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~~~g~vi~Li~~ 748 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSK 748 (936)
T ss_dssp CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC--------CCCEEEEESC
T ss_pred CEEEEEEECCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC-CCCCCCEEEEEEEC
T ss_conf 81599980726427760558989993899988999996487-78888779999869
No 5
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=384.27 Aligned_cols=454 Identities=24% Similarity=0.376 Sum_probs=299.0
Q ss_pred CCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---
Q ss_conf 79999488999999972-48989990899839999999999999997707997299999357555999999998616---
Q 000384 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1590)
Q Consensus 42 ~~~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~--- 117 (1590)
..+.||+||.++++.++ ++|+|+++|||+|||+++++++...+.... .+.+++++|++|+++|+.||++++++++
T Consensus 245 g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-AGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (797)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 889999999999999980999899969997299999999999998466-5679969999698999999999999861437
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC
Q ss_conf 98358986688877302278898307896999859999999972176-76542189984641003899089999999730
Q 000384 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1590)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~-~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~ 196 (1590)
++++..++|+..... .|.....+++|+|+||++|.+.+.++.+ .+.++++||+||||++...++|..++..+...
T Consensus 324 ~~~v~~~~g~~~~~~----~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~ 399 (797)
T 4a2q_A 324 GYSVQGISGENFSNV----SVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (797)
T ss_dssp TCCEEEECCC---------CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCHHH----HHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 946999969962324----6997407999999766999999982654651337789998863558876499999999997
Q ss_pred C----CCCCCEEEEECCCCCCCCCCCHHCHHHHHHHHHHHCCC-EEEEEC-CHHHHHHCCCCCCEEEEECCCCCCCCCCH
Q ss_conf 8----99980999805577567888800099999999965198-067304-51226220568613357635887765411
Q 000384 197 S----DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS-QVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCGSDL 270 (1590)
Q Consensus 197 ~----~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~s-~i~t~~-~~~~l~~~~~~p~~~~~~y~~~~~~~~~l 270 (1590)
. ...++++||||||..++. .........+..+...++. .+.+.. ....+..++..|......+....... .
T Consensus 400 ~~~~~~~~~~~l~lSATp~~~~~-~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~ 476 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGVGNA-KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNP--F 476 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCCTTC-CSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCH--H
T ss_pred HHCCCCCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCH--H
T ss_conf 63147887859997277554552-24899999999999854984885454317889973588854888457777867--8
Q ss_pred HHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHCCCHH--HHHHH-------HHHHHHHHH
Q ss_conf 3567875532104--------------------------578988534321000003--58999-------999999999
Q 000384 271 KGKLEVSWSKFDA--------------------------SLSKLQGSQLNCYKDMDD--KHKTL-------RKQLSDYHA 315 (1590)
Q Consensus 271 ~~~l~~~~~~~~~--------------------------~~~~l~~~~~~~~~~~~~--~~~~~-------~~~l~~~~~ 315 (1590)
...+......+.. .+..+.... ....+.. ..... ...+.. +.
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~ 553 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKC--RLLQLEDKEEESRICRALFICTEHLRK-YN 553 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHH--HHCCCSSHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHHHHHH-HH
T ss_conf 999999999999999998756776530000114056778999999987--774034320256799999999999999-99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999998314579999999999967677888898654699999999999998300686101100246772101137999
Q 000384 316 KILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395 (1590)
Q Consensus 316 ~~~~~~~~lG~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1590)
.........+.+.+...+............ ....... ...|. .....+... .......
T Consensus 554 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l---~~~~~-~~~~~l~~~-----------------~~~~~~~ 611 (797)
T 4a2q_A 554 DALIISEDARIIDALSYLTEFFTNVKNGPY-TELEQHL---TAKFQ-EKEPELIAL-----------------SKDETNE 611 (797)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTTC-CHHHHHH---HHHHH-TTHHHHHHH-----------------HHCTTCC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHH---HHHHH-HHHHHHHHH-----------------HCCCCCC
T ss_conf 887654132588899999999998750476-6899999---99999-999999876-----------------3078889
Q ss_pred CHHHHHHHHHHHH-CCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--CCCCCCHHHHHHHHHHHCC
Q ss_conf 9999999999984-099998189999800989999999986299998706999975788--8798899999999998308
Q 000384 396 STKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT--SVDALTPKVQKEVLESFRG 472 (1590)
Q Consensus 396 s~Kv~~L~~lL~~-~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~--~~~~l~~~~q~~vl~~Fr~ 472 (1590)
++|+..|.++|.. +....+.++||||+++.++..|.+.|...+.+.++++..++|.+. .+.+|+..+|.+++++|++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 95999999999998505899708999795899999999997475646655218984477545789899999999998513
Q ss_pred -CCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCC-CEEEEEECCC
Q ss_conf -98219997243223545788638998069999779999721123348-6299973122
Q 000384 473 -GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN-SQFILMLERS 529 (1590)
Q Consensus 473 -g~~niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~g-s~~i~lv~~~ 529 (1590)
|++++||||+++++|||+|+|++||+||.|+|+.+|+||+|| ||.. +.+++|+...
T Consensus 692 ~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~~~g~~i~l~~~~ 749 (797)
T 4a2q_A 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKT 749 (797)
T ss_dssp --CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC--------CCCEEEEECCH
T ss_pred CCCCEEEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC-CCCCCCEEEEEEECC
T ss_conf 6970499974805447975108989994899988999985388-878786599997287
No 6
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=381.77 Aligned_cols=454 Identities=24% Similarity=0.356 Sum_probs=297.9
Q ss_pred CCCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC--
Q ss_conf 879999488999999972-48989990899839999999999999997707997299999357555999999998616--
Q 000384 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-- 117 (1590)
Q Consensus 41 ~~~~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~-- 117 (1590)
...++||+||.++++.++ ++|+|+++|||+|||+++++++.+.+.... .+.+.+++|++|+++|+.||+++++.++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-AGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 7877877999999999974998999819997189999999999998374-567986999928899999999999987240
Q ss_pred -CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf -98358986688877302278898307896999859999999972176-7654218998464100389908999999973
Q 000384 118 -DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1590)
Q Consensus 118 -~~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~-~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~ 195 (1590)
++++..++|+..... .|......++|+|+||+.|.+.+.++.+ .+.++++||+||||++.++++|..++..++.
T Consensus 82 ~~~~~~~~~g~~~~~~----~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 157 (556)
T 4a2p_A 82 QGYSVQGISGENFSNV----SVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 157 (556)
T ss_dssp GTCCEEECCCC---------CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCH----HHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 6945999828987422----289861799999988999999998375025030779999887535886459999999998
Q ss_pred CC----CCCCCEEEEECCCCCCCCCCCHHCHHHHHHHHHHHCCCE-EEEEC-CHHHHHHCCCCCCEEEEECCCCCCCCCC
Q ss_conf 08----999809998055775678888000999999999651980-67304-5122622056861335763588776541
Q 000384 196 KS----DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQ-VFTIE-DKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1590)
Q Consensus 196 ~~----~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~s~-i~t~~-~~~~l~~~~~~p~~~~~~y~~~~~~~~~ 269 (1590)
.. .+.+++++|||||..++.. ........+..++..++.. +.++. ....+..++..|......+.......
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~~-~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 234 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNAK-NIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNP-- 234 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTCS-SHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCH--
T ss_pred HHHCCCCCCCEEEEEECCCCCCCHH-HHHHHHHHHHHHHHHCCCEEECCHHCCHHHHHHCCCCCCEEEEECCCCCCCH--
T ss_conf 5301368887699994785667516-6999999999999853984843332026778742799853799827876775--
Q ss_pred HHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHCCCH---------HHHHHHHHHHHHHH
Q ss_conf 13567875532104--------------------------57898853432100000---------35899999999999
Q 000384 270 LKGKLEVSWSKFDA--------------------------SLSKLQGSQLNCYKDMD---------DKHKTLRKQLSDYH 314 (1590)
Q Consensus 270 l~~~l~~~~~~~~~--------------------------~~~~l~~~~~~~~~~~~---------~~~~~~~~~l~~~~ 314 (1590)
....+......+.. .+..+.... ....+. ..+......+.. .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 311 (556)
T 4a2p_A 235 FAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKC--RLLQLEDKEEESRICRALFICTEHLRK-Y 311 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHH--HHC---CHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHHHHHH-H
T ss_conf 9999999999999999888632012103333443356789999999987--764054320167899999999999999-9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999831457999999999996767788889865469999999999999830068610110024677210113799
Q 000384 315 AKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGY 394 (1590)
Q Consensus 315 ~~~~~~~~~lG~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1590)
..........+.+.+...+............. .... .....+.. ....+... ......
T Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~---~~~~~~~~-~~~~l~~~-----------------~~~~~~ 369 (556)
T 4a2p_A 312 NDALIISEDARIIDALSYLTEFFTNVKNGPYT-ELEQ---HLTAKFQE-KEPELIAL-----------------SKDETN 369 (556)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC-HHHH---HHHHHHHT-THHHHHHH-----------------HHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHH---HHHHHHHH-HHHHHHHH-----------------CCCCCC
T ss_conf 99998861120789999999999998733798-7899---99998766-78876421-----------------037899
Q ss_pred CCHHHHHHHHHHHHC-CCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--CCCCCCHHHHHHHHHHHC
Q ss_conf 999999999999840-99998189999800989999999986299998706999975788--879889999999999830
Q 000384 395 ISTKLHELLQLFLSF-GKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT--SVDALTPKVQKEVLESFR 471 (1590)
Q Consensus 395 ~s~Kv~~L~~lL~~~-~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~--~~~~l~~~~q~~vl~~Fr 471 (1590)
.++|+..|.++|... ....+.++||||+++.++..|++.|...+.+.++++..++|.+. .+.+|+.++|.+++++|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99699999999999834799854999976589999999999858775500014787367765565669899999999840
Q ss_pred C-CCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCC-CEEEEEECC
Q ss_conf 8-98219997243223545788638998069999779999721123348-629997312
Q 000384 472 G-GKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN-SQFILMLER 528 (1590)
Q Consensus 472 ~-g~~niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~g-s~~i~lv~~ 528 (1590)
+ |++++||||+++++|||+|+|++||+||.|+|+..|+||+|| ||.. +..++++.+
T Consensus 450 ~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~ 507 (556)
T 4a2p_A 450 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSK 507 (556)
T ss_dssp ----CCEEEEEC-----------CEEEEETCCSCHHHHHHC---------CCEEEEESC
T ss_pred CCCCEEEEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC-CCCCCCEEEEEEEC
T ss_conf 46965899976704337775217889991899978899886387-87888418999827
No 7
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=1.00 E-value=1 Score=378.36 Aligned_cols=458 Identities=25% Similarity=0.383 Sum_probs=297.6
Q ss_pred CCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---C
Q ss_conf 9999488999999972-48989990899839999999999999997707997299999357555999999998616---9
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---D 118 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~---~ 118 (1590)
.++||+||.++++.++ ++|+|+++|||+|||+++++++.+.+.... ...+.+++|++|+++|+.||++++++++ +
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-CGQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf 98876999999999967998899959998399999999999998466-67898799996888999999999998705389
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 8358986688877302278898307896999859999999972176-765421899846410038990899999997308
Q 000384 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1590)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~-~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~~ 197 (1590)
+++..++|+..... .|.....+++|+|+||++|.+.+.++.+ .+.++++||+||||++.+.++|..++..++...
T Consensus 81 ~~~~~~~g~~~~~~----~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 156 (555)
T 3tbk_A 81 YNIASISGATSDSV----SVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHK 156 (555)
T ss_dssp CCEEEECTTTGGGS----CHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHH----HHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 47999759974012----28987369999997899999998607634401077899977545687334999999999754
Q ss_pred -----CCCCCEEEEECCCCCCCCCCCHHCHHHHHHHHHHHCCC-EEEEEC-CHHHHHHCCCCCCEEEEECCCCCCCC--C
Q ss_conf -----99980999805577567888800099999999965198-067304-51226220568613357635887765--4
Q 000384 198 -----DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS-QVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCG--S 268 (1590)
Q Consensus 198 -----~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~s-~i~t~~-~~~~l~~~~~~p~~~~~~y~~~~~~~--~ 268 (1590)
...++++||||||..++. .........+..+...+++ .+.++. ....+..++..|......+....... .
T Consensus 157 ~~~~~~~~~~~l~lSAT~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
T 3tbk_A 157 LGESRDPLPQVVGLTASVGVGDA-KTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKC 235 (555)
T ss_dssp TSSCCSCCCEEEEEESCCCCTTC-CSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHH
T ss_pred HCCCCCCCCEEEEEECCCCCCCC-CCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCHHHH
T ss_conf 11246888739999267666765-22999999999999856980663323578889864699826999826766671999
Q ss_pred CHHHHH---HHHHHHHHH--------------------HHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHHHHHH
Q ss_conf 113567---875532104--------------------57898853432100000--------35899999999999999
Q 000384 269 DLKGKL---EVSWSKFDA--------------------SLSKLQGSQLNCYKDMD--------DKHKTLRKQLSDYHAKI 317 (1590)
Q Consensus 269 ~l~~~l---~~~~~~~~~--------------------~~~~l~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~ 317 (1590)
.+...+ +.....+.. .+..+.... ..+.... ..+......+.. +...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~ 313 (555)
T 3tbk_A 236 IISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKAC-SVFQMADKEEESRVCKALFLYTSHLRK-YNDA 313 (555)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHH-HTCCCSSHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 99999999999999998765444312233344102468999999876-665046604677899999999999999-9998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 99999831457999999999996767788889865469999999999999830068610110024677210113799999
Q 000384 318 LYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397 (1590)
Q Consensus 318 ~~~~~~lG~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 397 (1590)
.......+.+.+...+........... ...........+.. ....+... .......++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~-----------------~~~~~~~~~ 371 (555)
T 3tbk_A 314 LIISEDAQMTDALNYLKAFFHDVREAA----FDETERELTRRFEE-KLEELEKV-----------------SRDPSNENP 371 (555)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHCC---------HHHHHHHHHHT-THHHHHHH-----------------HHCGGGCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHH-HHHHHHHH-----------------CCCCCCCCH
T ss_conf 752200227999999999999876336----66678999999864-55666542-----------------047776898
Q ss_pred HHHHHHHHHHHC-CCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--CCCCCCHHHHHHHHHHHCC-C
Q ss_conf 999999999840-99998189999800989999999986299998706999975788--8798899999999998308-9
Q 000384 398 KLHELLQLFLSF-GKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT--SVDALTPKVQKEVLESFRG-G 473 (1590)
Q Consensus 398 Kv~~L~~lL~~~-~~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~--~~~~l~~~~q~~vl~~Fr~-g 473 (1590)
|+..|.+++... ...++.++||||+++.++..|++.|...+...++++..++|.+. .+.+|+.++|.+++++|++ |
T Consensus 372 k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g 451 (555)
T 3tbk_A 372 KLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASG 451 (555)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999999715689966999967689999999999628676730024897058753345668899999999974279
Q ss_pred CCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEECCCH
Q ss_conf 821999724322354578863899806999977999972112334862999731223
Q 000384 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERSE 530 (1590)
Q Consensus 474 ~~niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~gs~~i~lv~~~E 530 (1590)
++++||||+++++|||+|+|++||+||.|+|+.+|+||+||+|+.++.+++++.+.+
T Consensus 452 ~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~~l~~~~~ 508 (555)
T 3tbk_A 452 DNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLLTSSAD 508 (555)
T ss_dssp CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCCCTTTSCEEEEEESCHH
T ss_pred CEEEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 713999816053278660379899917999778877752767678955999975877
No 8
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=357.88 Aligned_cols=434 Identities=24% Similarity=0.320 Sum_probs=272.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 98879999488999999972489899908998399999999999999977079972999993575559999999986169
Q 000384 39 TNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1590)
Q Consensus 39 ~~~~~~~pR~yQ~e~le~~l~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~~ 118 (1590)
..+..++||+||.++++.++.+++|+++|||+|||+++++++...+. ..+.+++|++|+++|+.||+++++++++
T Consensus 3 ~~~~~~~l~~~Q~~~i~~~~~~~~ll~~~tG~GKT~~~~~~~~~~~~-----~~~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 3 LRRDLIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLT-----KYGGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp BCHHHHCCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHH-----HSCSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHH-----CCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 55678786399999999996199899918998789999999999986-----4798599997888999999999998747
Q ss_pred C---CEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 8---3589866888773022788983078969998599999999721767654218998464100389908999999973
Q 000384 119 F---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1590)
Q Consensus 119 ~---~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~ 195 (1590)
. ++..++|+..... +.....+++|+|+||++|.+.+.++.+.+.++++||+||||++...+.+..++..+..
T Consensus 78 ~~~~~v~~~~g~~~~~~-----~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~ 152 (494)
T 1wp9_A 78 LPPEKIVALTGEKSPEE-----RSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKR 152 (494)
T ss_dssp SCGGGEEEECSCSCHHH-----HHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred CCHHHEEEEECCCCHHH-----HHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 56111687607753355-----6653357989996399999998608715654108999787566888819999999973
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHCHHHHHHHHHHHCCCEEEEEC--CHHHHHHCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 0899980999805577567888800099999999965198067304--51226220568613357635887765411356
Q 000384 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE--DKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273 (1590)
Q Consensus 196 ~~~~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~s~i~t~~--~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~ 273 (1590)
....+++++|||||..+ ...+..+...++....... ....+..+..........+... ..
T Consensus 153 -~~~~~~~l~lTaTp~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 214 (494)
T 1wp9_A 153 -QAKNPLVIGLTASPGST---------PEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLP--------EI 214 (494)
T ss_dssp -HCSSCCEEEEESCSCSS---------HHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCC--------HH
T ss_pred -CCCCCEEEEEECCCCCC---------CHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCCCEEEEECCCC--------HH
T ss_conf -28877699995699888---------5789999985070005026787587887527874268956885--------88
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHC-----CCH-HHHHHHHHHHHHH--------------------HHHHHHHHHHHHH
Q ss_conf 7875532104578988534-32100-----000-3589999999999--------------------9999999998314
Q 000384 274 LEVSWSKFDASLSKLQGSQ-LNCYK-----DMD-DKHKTLRKQLSDY--------------------HAKILYCLDELGL 326 (1590)
Q Consensus 274 l~~~~~~~~~~~~~l~~~~-~~~~~-----~~~-~~~~~~~~~l~~~--------------------~~~~~~~~~~lG~ 326 (1590)
.......+...+....... ...+. ... .........+... ...........+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (494)
T 1wp9_A 215 YKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGL 294 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf 99999989899999999999735565457773355789999999987533563113479999888889999999985257
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 57999999999996767788889865469999999999999830068610110024677210113799999999999999
Q 000384 327 ICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLF 406 (1590)
Q Consensus 327 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~lL 406 (1590)
.................. ...... .............+.. .......++|+..|.+++
T Consensus 295 ~~~~~~~~~l~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~------------------~~~~~~~~~k~~~l~~~l 352 (494)
T 1wp9_A 295 SALRAYIKKLYEEAKAGS--TKASKE--IFSDKRMKKAISLLVQ------------------AKEIGLDHPKMDKLKEII 352 (494)
T ss_dssp HHHHHHHHHHHHHHHTTC--CHHHHH--HHTSHHHHHHHHHHHH------------------HHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCC--CHHHHH--HHHHHHHHHHHHHHHH------------------HHHCCCCCHHHHHHHHHH
T ss_conf 999999999987522321--145566--6650788989999998------------------874589986999999999
Q ss_pred HHCC-CCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC--CCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 8409-99981899998009899999999862999987069999757888--79889999999999830898219997243
Q 000384 407 LSFG-KSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS--VDALTPKVQKEVLESFRGGKVNLLFATDV 483 (1590)
Q Consensus 407 ~~~~-~~~~~~~IIFv~~r~~a~~L~~~L~~~~~~~~~~~~~l~G~~~~--~~~l~~~~q~~vl~~Fr~g~~niLVaTsv 483 (1590)
.... ...+.++||||+++.++..+++.|.. .++.+..++|.+.. +..|+..+|.+++++|++|++++||||++
T Consensus 353 ~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~ 428 (494)
T 1wp9_A 353 REQLQRKQNSKIIVFTNYRETAKKIVNELVK----DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSV 428 (494)
T ss_dssp HHHHHHCTTCCEEEECSCHHHHHHHHHHHHH----TTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGG
T ss_pred HHHHCCCCCCEEEEEECCHHHHHHHHHHHHH----CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9984368997599997668999999999997----599807996566544444589999999999986699469998884
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 2235457886389980699997799997211233486299973
Q 000384 484 IEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526 (1590)
Q Consensus 484 leeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~gs~~i~lv 526 (1590)
+++|||+|+|++||+||.|+|+..|+||+|||+|.|+..++.+
T Consensus 429 ~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l 471 (494)
T 1wp9_A 429 GEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIIL 471 (494)
T ss_dssp GGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEE
T ss_pred CCCCCCCHHCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 1258871437989992898878999998752257788469999
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=330.52 Aligned_cols=323 Identities=20% Similarity=0.302 Sum_probs=237.6
Q ss_pred CCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---C
Q ss_conf 9999488999999972-48989990899839999999999999997707997299999357555999999998616---9
Q 000384 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---D 118 (1590)
Q Consensus 43 ~~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~---~ 118 (1590)
...||+||.++++.++ ++|+|+.+|||+|||+++.+++.+.+. ....+.+++|++|+++|+.||++.++... +
T Consensus 60 ~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~---~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 60 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE---LDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCC---TTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999899998679857997899878998505999999999986---057861699993759999999999999845158
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 83589866888773022788983078969998599999999721767654218998464100389908999999973089
Q 000384 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1590)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~~~ 198 (1590)
..+..+.|+... ....+......++|+|+||++|++.+.++.+.+.++++||+||||++... .+...+..++....
T Consensus 137 ~~~~~~~~~~~~---~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~-~~~~~~~~~~~~~~ 212 (414)
T 3eiq_A 137 ASCHACIGGTNV---RAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLN 212 (414)
T ss_dssp CCEEECCCCTTH---HHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHT-TTHHHHHHHHTTSC
T ss_pred CEEEEEECCCCH---HHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCC-CCHHHHHHHHHHCC
T ss_conf 339999789655---78999973699999998989999999759956303829999898886203-73999999998388
Q ss_pred CCCCEEEEECCCCCCCCCCCHHCHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 99809998055775678888000999999999651980673045122622056861335763588776541135678755
Q 000384 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278 (1590)
Q Consensus 199 ~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~s~i~t~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~l~~~~ 278 (1590)
..+++++|||||... +..+.. .+...+............ ..+
T Consensus 213 ~~~~~i~~SAT~~~~------------~~~~~~----------------~~~~~~~~~~~~~~~~~~--~~~-------- 254 (414)
T 3eiq_A 213 SNTQVVLLSATMPSD------------VLEVTK----------------KFMRDPIRILVKKEELTL--EGI-------- 254 (414)
T ss_dssp TTCEEEEECSCCCHH------------HHHHHT----------------TTCSSCEEECCCCCCCCT--TSC--------
T ss_pred CCCEEEEEEEECCHH------------HHHHHH----------------HHCCCCEEEEECCCCCCC--CCC--------
T ss_conf 877699999836878------------999999----------------875897899924776688--980--------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32104578988534321000003589999999999999999999831457999999999996767788889865469999
Q 000384 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358 (1590)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1590)
...
T Consensus 255 --------------~~~--------------------------------------------------------------- 257 (414)
T 3eiq_A 255 --------------RQF--------------------------------------------------------------- 257 (414)
T ss_dssp --------------CEE---------------------------------------------------------------
T ss_pred --------------EEE---------------------------------------------------------------
T ss_conf --------------599---------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCC
Q ss_conf 99999999983006861011002467721011379999999999999984099998189999800989999999986299
Q 000384 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438 (1590)
Q Consensus 359 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~ 438 (1590)
.........|+..+.+++.... ..++||||+++..+..+++.|..
T Consensus 258 ------------------------------~~~~~~~~~~~~~l~~~~~~~~---~~~~lvf~~~~~~~~~l~~~l~~-- 302 (414)
T 3eiq_A 258 ------------------------------YINVEREEWKLDTLCDLYETLT---ITQAVIFINTRRKVDWLTEKMHA-- 302 (414)
T ss_dssp ------------------------------EEECSSSTTHHHHHHHHHHSSC---CSSCEEECSCHHHHHHHHHHHHT--
T ss_pred ------------------------------EEEECHHHHHHHHHHHHHHHCC---CCCEEEEECCHHHHHHHHHHHHH--
T ss_conf ------------------------------9996768758999999998479---98289996878999999999986--
Q ss_pred CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 99870699997578887988999999999983089821999724322354578863899806999977999972112334
Q 000384 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518 (1590)
Q Consensus 439 ~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~ 518 (1590)
.++.+..+||. |+..+|.++++.|++|+.++||||+++++|+|+|++++||+||.|.+..+|+||+|||+|.
T Consensus 303 --~~~~~~~~h~~------~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 374 (414)
T 3eiq_A 303 --RDFTVSAMHGD------MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRF 374 (414)
T ss_dssp --TTCCCEEC---------CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC---
T ss_pred --CCCEEEEECCC------CCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCC
T ss_conf --69708973477------9999999999999759993999888312697856788899967999888823415725689
Q ss_pred CCE--EEEEECCCH
Q ss_conf 862--999731223
Q 000384 519 NSQ--FILMLERSE 530 (1590)
Q Consensus 519 gs~--~i~lv~~~E 530 (1590)
|.. .++++.+.+
T Consensus 375 g~~g~~~~~~~~~~ 388 (414)
T 3eiq_A 375 GRKGVAINMVTEED 388 (414)
T ss_dssp ----CEEEEECSTH
T ss_pred CCCCEEEEEECHHH
T ss_conf 89766999972778
No 10
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=1.00 E-value=1 Score=329.21 Aligned_cols=321 Identities=15% Similarity=0.213 Sum_probs=239.0
Q ss_pred CCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC----C
Q ss_conf 999488999999972-48989990899839999999999999997707997299999357555999999998616----9
Q 000384 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT----D 118 (1590)
Q Consensus 44 ~~pR~yQ~e~le~~l-~~n~Ii~~~TGsGKTliaillI~~~l~~~~~~~~~~~vlvLvPtv~Lv~Qq~~~i~~~~----~ 118 (1590)
-.||+||.++++.++ ++|+++.+|||+|||+++++++...+. ....+.+++|++|+++|+.||++.++.+. +
T Consensus 29 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~---~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 29 EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE---PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp CSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCC---CCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHC---CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 9998899999999826986899899998488999999998514---5679736999879899999999999999710787
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 83589866888773022788983078969998599999999721767654218998464100389908999999973089
Q 000384 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1590)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~VlV~T~q~Ll~~L~~~~~~l~~i~LIIiDEaH~~~~~~~~~~imk~~~~~~~ 198 (1590)
+++..++|+.....+.. ......++|+|+||+.|.+.+.+....+.++++||+||||++..++.+...+..++....
T Consensus 106 ~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~ 182 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 182 (391)
T ss_dssp CCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC
T ss_pred EEEEEEECCCCHHHHHH---HHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 07999857987798999---973699989998789999999738855220689999288887314033999999985299
Q ss_pred CCCCEEEEECCCCCCCCCCCHHCHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 99809998055775678888000999999999651980673045122622056861335763588776541135678755
Q 000384 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278 (1590)
Q Consensus 199 ~~priLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~s~i~t~~~~~~l~~~~~~p~~~~~~y~~~~~~~~~l~~~l~~~~ 278 (1590)
..+++++|||||.... ...+...+. .|............ ...+
T Consensus 183 ~~~~~i~~SAT~~~~~-----------~~~~~~~~~-----------------~~~~~~~~~~~~~~-~~~~-------- 225 (391)
T 1xti_A 183 HEKQVMMFSATLSKEI-----------RPVCRKFMQ-----------------DPMEIFVDDETKLT-LHGL-------- 225 (391)
T ss_dssp SSSEEEEEESSCCSTH-----------HHHHHHHCS-----------------SCEEEECCCCCCCC-CTTC--------
T ss_pred CCCEEEEEEEECCHHH-----------HHHHHHHCC-----------------CCEEEEECCCCCCC-CCCC--------
T ss_conf 8735999985178789-----------999998758-----------------98699946766557-0032--------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32104578988534321000003589999999999999999999831457999999999996767788889865469999
Q 000384 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358 (1590)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1590)
...+..
T Consensus 226 --------------~~~~~~------------------------------------------------------------ 231 (391)
T 1xti_A 226 --------------QQYYVK------------------------------------------------------------ 231 (391)
T ss_dssp --------------EEEEEE------------------------------------------------------------
T ss_pred --------------EEEEEE------------------------------------------------------------
T ss_conf --------------489998------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCC
Q ss_conf 99999999983006861011002467721011379999999999999984099998189999800989999999986299
Q 000384 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438 (1590)
Q Consensus 359 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~lL~~~~~~~~~~~IIFv~~r~~a~~L~~~L~~~~ 438 (1590)
.....|...+.+++... ...++||||+++..+..+++.|..
T Consensus 232 ----------------------------------~~~~~~~~~l~~~l~~~---~~~~~lvf~~~~~~~~~l~~~L~~-- 272 (391)
T 1xti_A 232 ----------------------------------LKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVE-- 272 (391)
T ss_dssp ----------------------------------CCGGGHHHHHHHHHHHS---CCSEEEEECSCHHHHHHHHHHHHH--
T ss_pred ----------------------------------CCCHHHHHHHHHHHHHC---CCCCEEEEECCHHHHHHHHHHHHH--
T ss_conf ----------------------------------48405799999999843---788589991857899999999986--
Q ss_pred CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 99870699997578887988999999999983089821999724322354578863899806999977999972112334
Q 000384 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518 (1590)
Q Consensus 439 ~~~~~~~~~l~G~~~~~~~l~~~~q~~vl~~Fr~g~~niLVaTsvleeGIDIp~~~~VI~fD~p~s~~syiQr~GRArR~ 518 (1590)
.++.+..+||. ++..+|.++++.|++|+.++||||+++++|+|+|++++||+||.|++..+|+||+|||+|.
T Consensus 273 --~~~~~~~~~~~------~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~ 344 (391)
T 1xti_A 273 --QNFPAIAIHRG------MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 344 (391)
T ss_dssp --TTCCEEEECTT------SCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSS
T ss_pred --CCCCEEEEECC------CCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCC
T ss_conf --79967997589------9989999999998669983999887353478711089899968999989988863445679
Q ss_pred CCE--EEEEECC
Q ss_conf 862--9997312
Q 000384 519 NSQ--FILMLER 528 (1590)
Q Consensus 519 gs~--~i~lv~~ 528 (1590)
|.. .++++..
T Consensus 345 g~~g~~~~~~~~ 356 (391)
T 1xti_A 345 GTKGLAITFVSD 356 (391)
T ss_dssp CCCCEEEEEECS
T ss_pred CCCEEEEEEECC
T ss_conf 996389999706
Done!