BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000385
         (1588 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
           From Salmonella Typhimurium Lt2
 pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
           From Salmonella Typhimurium Lt2
          Length = 295

 Score = 33.1 bits (74), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 15/85 (17%)

Query: 843 NLDARRRITFFANSLFMNMPSAPKVRDMISFSVLTPYFKEDVLYSIDELNQENEDGITTL 902
           N++  R++T FA+ +F+ +P  P+V              EDVL+      + +  G  T+
Sbjct: 48  NVETARQVTEFADIIFIXVPDTPQV--------------EDVLFGEHGCAKTSLQG-KTI 92

Query: 903 FYLQKIYPDEWTNFQKRINDPKLNY 927
                I P E   F +R+N+   +Y
Sbjct: 93  VDXSSISPIETKRFAQRVNEXGADY 117


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,994,875
Number of Sequences: 62578
Number of extensions: 1940232
Number of successful extensions: 3697
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3696
Number of HSP's gapped (non-prelim): 7
length of query: 1588
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1476
effective length of database: 7,964,601
effective search space: 11755751076
effective search space used: 11755751076
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)