Query 000385
Match_columns 1588
No_of_seqs 213 out of 373
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 16:44:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000385.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_164-167//hhsearch_pdb/000385hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 1.0 1 1 35.2 0.7 134 1087-1234 224-363 (802)
2 2ysr_A DEP domain-containing p 1.0 1 1 20.3 -0.9 28 605-632 8-35 (105)
3 2z86_A Chondroitin synthase; G 1.0 1 1 18.0 0.2 190 999-1233 375-566 (625)
4 2lai_A Avirulence protein ATR1 1.0 1 1 14.4 -2.5 20 898-920 56-75 (101)
5 3fbx_A Putative phospholipase 1.0 1 1 14.3 0.7 15 1183-1197 530-544 (559)
6 3fgr_B Putative phospholipase 1.0 1 1 14.3 0.7 15 1183-1197 328-342 (357)
7 3n4p_A Terminase subunit UL89 1.0 1 1 13.7 0.4 53 599-661 142-194 (279)
8 1l6x_B Minimized B-domain of p 1.0 1 1 13.6 -0.4 21 1108-1128 1-21 (34)
9 2ofc_A Sclerotium rolfsii lect 1.0 1 1 13.5 -2.6 6 98-103 72-77 (142)
10 3qt1_I DNA-directed RNA polyme 1.0 1 1 13.2 0.5 11 137-147 20-30 (133)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=35.19 Aligned_cols=134 Identities=15% Similarity=0.157 Sum_probs=80.6
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEECCC-----CHHHCCCC
Q ss_conf 897756321232202322000247751207-998512104898501999999961840333010266-----11010001
Q 000385 1087 EGKPENQNHAIIFTRGEALQTIDMNQDNYF-EEAFKMRNVLEEFLKSPSGRREPTILGLREHIFTGS-----VSSLAWFM 1160 (1588)
Q Consensus 1087 eGKpeNQNhAiiFtRGE~lQtIDmNQDnYl-EE~lKmrnlL~Ef~~~~~g~~~~~IlG~RE~IFt~~-----vssLa~f~ 1160 (1588)
.||+.|.|+++-.++||++-.+|..- .+ .+++ +.+++.|++++ .+.+++.+-.+..++ .+......
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~--~~~pd~L--~~lv~~~~~dp----~v~~V~~~~~~~~~~~~~~~~~~~~~~~ 295 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADH--VPSRDFL--ARTVGYFVEDP----DLFLVQTPHFFINPDPIQRNLALGDRCP 295 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTE--EECTTHH--HHHHHHHHHSS----SCCEEECCCCBSSCCHHHHHHTCCTTSC
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCCC--CCCHHHH--HHHHHHHHCCC----CEEEEECCEEEECCCHHHHHHHHHHHHH
T ss_conf 76368999999965999999999998--8185899--99999984099----8599965679767855765444776516
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEEE
Q ss_conf 12213677888763115561233226884322101123686332221224505542011222356202377646
Q 000385 1161 SNQETSFVTISQRILAYPLRVRFHYGHPDIFDRIFHITRGGISKASKTINLSEDIFAGMNSTLRGGYITHHEYI 1234 (1588)
Q Consensus 1161 a~qE~sF~Tl~qR~la~pl~vr~HYGHPD~fd~~f~~trGGvSKAsk~i~lsEDIfaG~n~~lRgG~i~h~eyi 1234 (1588)
.....|-...++.... .....--|+-=++.+-....-||.... .++||..-++....+|.++.++.-.
T Consensus 296 -~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~~----~~~ED~~l~~rl~~~G~ri~~~~~~ 363 (802)
T 4hg6_A 296 -PENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAGE----TITEDAETALEIHSRGWKSLYIDRA 363 (802)
T ss_dssp -CTTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCCS----SSSHHHHHHHHHHTTTCCEEECCCC
T ss_pred -HHHHHHHHHHHHHHHH-CCCCEECCCCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf -7899998888754764-388454266403249999970886788----8030999999999769959993688
No 2
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=20.25 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 4301335899850133347780000100
Q 000385 605 ANFSHVWNEFIESMREEDLISNDDRDLL 632 (1588)
Q Consensus 605 ~~Fa~vWNeII~SmReEDLISdrE~~lL 632 (1588)
.+...+||+||..||....|-||...+=
T Consensus 8 ~~at~lw~~ii~~~~~g~~ikdrr~~lk 35 (105)
T 2ysr_A 8 YRATKLWNEVTTSFRAGMPLRKHRQHFK 35 (105)
T ss_dssp HHHHHHHHHHHHHHHHSCSCCCCCCSSS
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEECCE
T ss_conf 1178999999999975997532346889
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=17.99 Aligned_cols=190 Identities=14% Similarity=0.112 Sum_probs=88.7
Q ss_pred CCCCEEEEEECCCCCCCCCHHHHHHCHHHHHHHH-HHCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEE
Q ss_conf 8752999742045699980223112055799999-859993998840123433556641388788706987543048842
Q 000385 999 MKFTYVVSCQLYGAQKKSDDLRDRSCYNNILNLM-IKYPSLRVAYIDEREETVNEKSQKFHYSVLLKGGDKYDEEIYRIK 1077 (1588)
Q Consensus 999 ~KF~yvvs~Q~yg~~~~~~~~~~~a~~~~i~~Lm-~~~p~LrVAYide~~~~~~g~~~~~yyS~Lik~~~~~~~~~yrik 1077 (1588)
.+.+.|+.+ | +.++.-. +.++.++ ++||+..|--+|.-.. ++..+ . ++.....+..+.-+.
T Consensus 375 ~~vsiii~~--y---n~~~~l~-----~~l~s~~~q~~~~~eiivvdd~S~--d~t~~--~----~~~~~~~~~~i~~~~ 436 (625)
T 2z86_A 375 PLVSIYIPA--Y---NCSKYIV-----RCVESALNQTITDLEVCICDDGST--DDTLR--I----LQEHYANHPRVRFIS 436 (625)
T ss_dssp CSEEEEEEE--S---SCTTTHH-----HHHHHHHSSSCCSEEEEEEEESCS--SSHHH--H----HHHHHTTCTTEEEEE
T ss_pred CEEEEEEEC--C---CCHHHHH-----HHHHHHHHCCCCCEEEEEEECCCC--HHHHH--H----HHHHHHHCCCEEEEE
T ss_conf 717999957--8---9889999-----999999817699828999989698--64999--9----999885499389991
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEECCCCHHH
Q ss_conf 699997678897756321232202322000247751207-9985121048985019999999618403330102661101
Q 000385 1078 LPGPPTDIGEGKPENQNHAIIFTRGEALQTIDMNQDNYF-EEAFKMRNVLEEFLKSPSGRREPTILGLREHIFTGSVSSL 1156 (1588)
Q Consensus 1078 LpG~~pilGeGKpeNQNhAiiFtRGE~lQtIDmNQDnYl-EE~lKmrnlL~Ef~~~~~g~~~~~IlG~RE~IFt~~vssL 1156 (1588)
+. | .|++.+-|.++-..+|||+-.+|. |..+ .++| ..+++.|++++ .+.+++.....+.++-..+
T Consensus 437 -~~-n----~G~~~a~n~g~~~a~g~~i~~ld~--D~~~~~~~l--~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~ 502 (625)
T 2z86_A 437 -QK-N----KGIGSASNTAVRLCRGFYIGQLDS--DDFLEPDAV--ELCLDEFRKDL----SLACVYTTNRNIDREGNLI 502 (625)
T ss_dssp -EC-C----CCHHHHHHHHHHHCCSSEEEECCT--TCEECTTHH--HHHHHHHHHCT----TCSEEEEEEEEECTTSCEE
T ss_pred -CC-C----CCHHHHHHHHHHHCCCCEEEEECC--CCCCCHHHH--HHHHHHHHHCC----CEEEEEEEEEEECCCCCEE
T ss_conf -79-8----898999999998567787999889--766283599--99999998479----8139982048987999874
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEE
Q ss_conf 00011221367788876311556123322688432210112368633222122450554201122235620237764
Q 000385 1157 AWFMSNQETSFVTISQRILAYPLRVRFHYGHPDIFDRIFHITRGGISKASKTINLSEDIFAGMNSTLRGGYITHHEY 1233 (1588)
Q Consensus 1157 a~f~a~qE~sF~Tl~qR~la~pl~vr~HYGHPD~fd~~f~~trGGvSKAsk~i~lsEDIfaG~n~~lRgG~i~h~ey 1233 (1588)
.........+- .. +...+-.||.-++.+-....-||....- ...||.--.......| ++.+..-
T Consensus 503 ~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~r~~~~~~ggfd~~~---~~~eD~dl~~r~~~~g-~~~~~~~ 566 (625)
T 2z86_A 503 SNGYNWPIYSR----EK-----LTSAMICHHFRMFTARAWNLTEGFNESI---SNAVDYDMYLKLSEVG-PFKHINK 566 (625)
T ss_dssp EECCCCSSCCH----HH-----HTTSCCCCSCEEEEHHHHTTTTCCCSSC---SSCHHHHHHHHHTTTS-CEEEEEE
T ss_pred CCCCCCCCCCH----HH-----HHHCCCCCCEEEEEHHHHHHHCCCCCCC---CCHHHHHHHHHHHHHC-CEEEECC
T ss_conf 16766665788----89-----8535467746898899999728999736---8727999999999749-9998287
No 4
>2lai_A Avirulence protein ATR13; nucleolar localization, signaling protein; NMR {Hyaloperonospora parasitica}
Probab=1.00 E-value=1 Score=14.44 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHCCHHHHHHHHHH
Q ss_conf 62089999862971234478650
Q 000385 898 GITTLFYLQKIYPDEWTNFQKRI 920 (1588)
Q Consensus 898 gvsiL~YLq~i~PdEW~NFleR~ 920 (1588)
-.|+++||+++||+- =+||+
T Consensus 56 yasv~eylkk~ypgp---~ieri 75 (101)
T 2lai_A 56 YASVMEYLKKTYPGP---DIERI 75 (101)
T ss_dssp SCCCCCCTTTSCCSH---HHHHH
T ss_pred HHHHHHHHHHHCCCC---CHHHH
T ss_conf 999999998727994---39999
No 5
>3fbx_A Putative phospholipase B-like 2; alpha beta, glycosylated, disulphide bonds, oxidized cystein glycoprotein, hydrolase, lipid degradation, lysosome; HET: NAG PG4 PGE; 2.40A {Mus musculus} PDB: 3fgw_A*
Probab=1.00 E-value=1 Score=14.31 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.1
Q ss_pred EECCCCCCCCCCCCC
Q ss_conf 322688432210112
Q 000385 1183 FHYGHPDIFDRIFHI 1197 (1588)
Q Consensus 1183 ~HYGHPD~fd~~f~~ 1197 (1588)
.|+||||+||=-|..
T Consensus 530 ~H~G~Pd~~nF~~v~ 544 (559)
T 3fbx_A 530 LHMGQPDLWMFSPIR 544 (559)
T ss_dssp CCTTCCSEECCCCEE
T ss_pred CCCCCCCCCCCCCEE
T ss_conf 979999672778789
No 6
>3fgr_B Putative phospholipase B-like 2 40 kDa form; alpha beta, glycosylated, disulphide bonds, N-terminal nucle hydrolase fold, two chain form; HET: NAG; 1.80A {Mus musculus} PDB: 3fgt_B*
Probab=1.00 E-value=1 Score=14.31 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.1
Q ss_pred EECCCCCCCCCCCCC
Q ss_conf 322688432210112
Q 000385 1183 FHYGHPDIFDRIFHI 1197 (1588)
Q Consensus 1183 ~HYGHPD~fd~~f~~ 1197 (1588)
.|+||||+||=-|..
T Consensus 328 ~H~G~Pd~~~F~~v~ 342 (357)
T 3fgr_B 328 LHMGQPDLWMFSPIR 342 (357)
T ss_dssp CCTTCCSEECCCCEE
T ss_pred CCCCCCCCCCCCCEE
T ss_conf 969988672777789
No 7
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=1.00 E-value=1 Score=13.68 Aligned_cols=53 Identities=9% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHH
Q ss_conf 100123430133589985013334778000010034688999653235723313844789869
Q 000385 599 VHRRNIANFSHVWNEFIESMREEDLISNDDRDLLLVPYSSEDVSVVQWPPFLLASKIPIALDM 661 (1588)
Q Consensus 599 ~~~~~~~~Fa~vWNeII~SmReEDLISdrE~~lL~~p~~~~~~~~i~wP~FLla~ki~~Ald~ 661 (1588)
.++..++.+|-+=++.+.+.+. .+++-+.+...+ .++||-|||..+=..|.|.
T Consensus 142 SsQdsAVaIA~~i~~~~~~~~~--------~~~~FyH~~d~~--~v~~PfylL~~eK~~Afe~ 194 (279)
T 3n4p_A 142 TNQAAAVRIACLIRQSVQSSTL--------IRVLFYHTPDQN--HIEQPFYLMGRDKALAVEQ 194 (279)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCC--------CEEEEECEEETT--TEEESCBCCSTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCC--------CCEEEEECCCCC--CCCCCCHHHCCCHHHHHHH
T ss_conf 4188999999999987642456--------637998417986--4308731206404799999
No 8
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=1.00 E-value=1 Score=13.63 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 247751207998512104898
Q 000385 1108 IDMNQDNYFEEAFKMRNVLEE 1128 (1588)
Q Consensus 1108 IDmNQDnYlEE~lKmrnlL~E 1128 (1588)
.|+-|.|-|=|.|+|.||-+|
T Consensus 1 ~~~~qQnaFYevLh~~nLtEe 21 (34)
T 1l6x_B 1 FNMQCQRRFYEALHDPNLNEE 21 (34)
T ss_dssp CCHHHHHHHHHHHHCTTCCHH
T ss_pred CCHHHHHHHHHHHCCCCCCHH
T ss_conf 978999999999918987899
No 9
>2ofc_A Sclerotium rolfsii lectin; dual specificity, sugar binding protein; 1.11A {Athelia rolfsii} PDB: 2ofd_A* 2ofe_A*
Probab=1.00 E-value=1 Score=13.50 Aligned_cols=6 Identities=67% Similarity=1.863 Sum_probs=0.0
Q ss_pred HHHHHH
Q ss_conf 289996
Q 000385 98 NYWSWC 103 (1588)
Q Consensus 98 NYkkWC 103 (1588)
||++||
T Consensus 72 Nyk~Wc 77 (142)
T 2ofc_A 72 NYKRWC 77 (142)
T ss_dssp TTEEEE
T ss_pred CCCCHH
T ss_conf 375120
No 10
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=13.25 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=0.0
Q ss_pred CCCCCCCCHHH
Q ss_conf 23465443357
Q 000385 137 EASNIRFMPEC 147 (1588)
Q Consensus 137 EAaNLRFMPEC 147 (1588)
|.+.+||+|||
T Consensus 20 ~~~~~~FCPeC 30 (133)
T 3qt1_I 20 HMTTFRFCRDC 30 (133)
T ss_dssp --CCCCBCTTT
T ss_pred CCCCCEECCCC
T ss_conf 42487558888
Done!