Query 000385
Match_columns 1588
No_of_seqs 213 out of 373
Neff 4.6
Searched_HMMs 13730
Date Tue Mar 26 16:55:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000385.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_164-167//hhsearch_scop/000385hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 5.3 65 0.0047 6.1 1.9 34 1087-1120 93-129 (328)
2 d1wixa_ a.40.3.1 (A:) Hook hom 4.2 87 0.0064 5.1 1.1 15 897-911 35-49 (164)
3 d1dfma_ c.52.1.5 (A:) Restrict 3.8 1E+02 0.0073 4.7 3.3 54 1089-1147 120-173 (223)
4 d1t4wa_ b.2.5.2 (A:) Transcrip 2.4 1.7E+02 0.013 2.9 0.7 12 909-920 180-192 (196)
5 d1y2ta_ b.97.1.2 (A:) TF antig 2.2 59 0.0043 6.4 -2.6 6 98-103 72-77 (142)
6 d1x99a_ b.97.1.2 (A:) Lectin x 2.0 64 0.0047 6.1 -2.6 6 98-103 75-80 (145)
7 d1jaea1 b.71.1.1 (A:379-471) A 2.0 1.9E+02 0.014 2.6 -0.3 13 1091-1103 9-21 (93)
8 d1t8ha_ d.194.1.2 (A:) Hypothe 2.0 2.2E+02 0.016 2.2 1.9 30 1188-1226 2-49 (272)
9 d1kl9a1 a.60.14.1 (A:89-182) E 2.0 1.3E+02 0.0098 3.7 -1.1 28 1173-1215 43-83 (94)
10 d1w4ta1 d.3.1.5 (A:1-277) Aryl 2.0 2.2E+02 0.016 2.1 0.8 87 1184-1270 48-157 (277)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.33 E-value=65 Score=6.05 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=24.4
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCC---CCCHHHHHH
Q ss_conf 8977563212322023220002477---512079985
Q 000385 1087 EGKPENQNHAIIFTRGEALQTIDMN---QDNYFEEAF 1120 (1588)
Q Consensus 1087 eGKpeNQNhAiiFtRGE~lQtIDmN---QDnYlEE~l 1120 (1588)
-|.+...|.++--++||++-.+|.- ..++||+.+
T Consensus 93 ~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~ 129 (328)
T d1xhba2 93 SGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 129 (328)
T ss_dssp CCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHH
T ss_conf 3216887899986311002201765566736999999
No 2
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.20 E-value=87 Score=5.09 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=6.9
Q ss_pred CCCCHHHHHHHHCCH
Q ss_conf 962089999862971
Q 000385 897 DGITTLFYLQKIYPD 911 (1588)
Q Consensus 897 dgvsiL~YLq~i~Pd 911 (1588)
||+-+-+-|.+|-|+
T Consensus 35 DGv~l~~iL~qIdP~ 49 (164)
T d1wixa_ 35 NGVTMAQVLHQIDVA 49 (164)
T ss_dssp TSHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHCCC
T ss_conf 369999999984965
No 3
>d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]}
Probab=3.77 E-value=1e+02 Score=4.66 Aligned_cols=54 Identities=30% Similarity=0.319 Sum_probs=34.9
Q ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCE
Q ss_conf 77563212322023220002477512079985121048985019999999618403330
Q 000385 1089 KPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKMRNVLEEFLKSPSGRREPTILGLREH 1147 (1588)
Q Consensus 1089 KpeNQNhAiiFtRGE~lQtIDmNQDnYlEE~lKmrnlL~Ef~~~~~g~~~~~IlG~RE~ 1147 (1588)
+.++-+-+||-|.| .+-+-.|-|+|+|.+.--=+-|.+..-.+ -|++|||.-|-
T Consensus 120 ~~~~t~~~Ii~tk~--~~~~asn~~~y~e~~~~~L~~l~~~~v~d---vPi~~~gi~e~ 173 (223)
T d1dfma_ 120 DEEGMKVAIIITKG--HMFPASNSSLYYEQAQNQLNSLAEYNVFD---VPIRLVGLIED 173 (223)
T ss_dssp SSSBCCEEEEEEEC--TTSCCSTTBCCHHHHHHHHHHHHHTTCCC---SCEEEEEEECC
T ss_pred CCCCCCEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCC---CCEEEEEECCC
T ss_conf 02466569999624--34203461479999999998627363234---55555660572
No 4
>d1t4wa_ b.2.5.2 (A:) Transcription factor CEP-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=2.38 E-value=1.7e+02 Score=2.86 Aligned_cols=12 Identities=50% Similarity=1.212 Sum_probs=7.4
Q ss_pred CC-HHHHHHHHHH
Q ss_conf 97-1234478650
Q 000385 909 YP-DEWTNFQKRI 920 (1588)
Q Consensus 909 ~P-dEW~NFleR~ 920 (1588)
|| .+|+||-||-
T Consensus 180 yprrdwknfce~e 192 (196)
T d1t4wa_ 180 YPRRDWKNFCERE 192 (196)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 3413667664443
No 5
>d1y2ta_ b.97.1.2 (A:) TF antigen-binding lectin {Common mushroom (Agaricus bisporus) [TaxId: 5341]}
Probab=2.20 E-value=59 Score=6.38 Aligned_cols=6 Identities=67% Similarity=1.863 Sum_probs=0.0
Q ss_pred HHHHHH
Q ss_conf 289996
Q 000385 98 NYWSWC 103 (1588)
Q Consensus 98 NYkkWC 103 (1588)
|||+||
T Consensus 72 NYk~Wc 77 (142)
T d1y2ta_ 72 NYKRWC 77 (142)
T ss_dssp TTEEEE
T ss_pred CCCCCE
T ss_conf 487320
No 6
>d1x99a_ b.97.1.2 (A:) Lectin xcl {Xerocomus chrysenteron [TaxId: 5386]}
Probab=2.04 E-value=64 Score=6.10 Aligned_cols=6 Identities=67% Similarity=1.863 Sum_probs=0.0
Q ss_pred HHHHHH
Q ss_conf 289996
Q 000385 98 NYWSWC 103 (1588)
Q Consensus 98 NYkkWC 103 (1588)
||++||
T Consensus 75 NYk~Wc 80 (145)
T d1x99a_ 75 NYKRWC 80 (145)
T ss_dssp TTEEEE
T ss_pred CCCCHH
T ss_conf 487330
No 7
>d1jaea1 b.71.1.1 (A:379-471) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}
Probab=2.02 E-value=1.9e+02 Score=2.65 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=0.0
Q ss_pred CCCCCHHHHCCCC
Q ss_conf 5632123220232
Q 000385 1091 ENQNHAIIFTRGE 1103 (1588)
Q Consensus 1091 eNQNhAiiFtRGE 1103 (1588)
||-|+.|.|.||.
T Consensus 9 dng~nqIAF~RG~ 21 (93)
T d1jaea1 9 SNDDNQIAFSRGS 21 (93)
T ss_dssp ECSSSEEEEEETT
T ss_pred ECCCCEEEEECCC
T ss_conf 8999579991599
No 8
>d1t8ha_ d.194.1.2 (A:) Hypothetical protein YlmD {Bacillus stearothermophilus [TaxId: 1422]}
Probab=1.99 E-value=2.2e+02 Score=2.17 Aligned_cols=30 Identities=43% Similarity=0.628 Sum_probs=0.0
Q ss_pred CCCCC------------------CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 84322------------------1011236863322212245055420112223562
Q 000385 1188 PDIFD------------------RIFHITRGGISKASKTINLSEDIFAGMNSTLRGG 1226 (1588)
Q Consensus 1188 PD~fd------------------~~f~~trGGvSKAsk~i~lsEDIfaG~n~~lRgG 1226 (1588)
||+++ .-|.+-.|||||. .|+++|.-..-|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~v~~gfttR~GGvS~~---------p~~slNl~~~vg 49 (272)
T d1t8ha_ 2 PDIFQQEARGWLRCGAPPFAGAVAGLTTKHGGESKG---------PFASLNMGLHVG 49 (272)
T ss_dssp CCSEEECSSSEEEECCGGGTTSEEEEECSCSCCCCG---------GGCSCCCCSSSS
T ss_pred CCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCC---------CCCCCCCCCCCC
T ss_conf 622331146841589988899879986799884789---------777612779999
No 9
>d1kl9a1 a.60.14.1 (A:89-182) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.98 E-value=1.3e+02 Score=3.70 Aligned_cols=28 Identities=29% Similarity=0.558 Sum_probs=0.0
Q ss_pred HHHCCCCCEEE-ECCC------------CCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 63115561233-2268------------8432210112368633222122450554
Q 000385 1173 RILAYPLRVRF-HYGH------------PDIFDRIFHITRGGISKASKTINLSEDI 1215 (1588)
Q Consensus 1173 R~la~pl~vr~-HYGH------------PD~fd~~f~~trGGvSKAsk~i~lsEDI 1215 (1588)
+..|+||.-|. |+|| |++|| ++.|+|++
T Consensus 43 ~~iaWpl~~ky~~~g~~aydaFK~av~dp~il~---------------~l~l~~~v 83 (94)
T d1kl9a1 43 QRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILD---------------SLDLNEDE 83 (94)
T ss_dssp HHTHHHHHHHHTCTTHHHHHHHHHHHHCGGGGT---------------TSSCCHHH
T ss_pred HHHHCCCHHHHCCCCCCHHHHHHHHHCCCCCCC---------------CCCCCHHH
T ss_conf 885022188747787319999999855800203---------------68999899
No 10
>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=1.97 E-value=2.2e+02 Score=2.12 Aligned_cols=87 Identities=18% Similarity=0.260 Sum_probs=0.0
Q ss_pred ECCCC------CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEE-------------EEEEE-EEECCCC---
Q ss_conf 22688------4322101123686332221224505542011222356202-------------37764-6524643---
Q 000385 1184 HYGHP------DIFDRIFHITRGGISKASKTINLSEDIFAGMNSTLRGGYI-------------THHEY-IQVGKGR--- 1240 (1588)
Q Consensus 1184 HYGHP------D~fd~~f~~trGGvSKAsk~i~lsEDIfaG~n~~lRgG~i-------------~h~ey-iq~GKGR--- 1240 (1588)
|+|+| ++|+|+-.--|||..=-..++=-.==-=-||++.+-+|+| +|.-- ++++.++
T Consensus 48 ~~g~~i~ld~~~l~~kiV~~~rGGyC~E~N~Lf~~lL~~LGf~v~~~~arV~~~~~~~~~~~~~~H~~l~V~i~~~~ylv 127 (277)
T d1w4ta1 48 LLDRPIEIDADKVFAKVVEGSRGGYCFELNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAEGEFLV 127 (277)
T ss_dssp HTTCCCCCSHHHHHHHHTTTTCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEETTEEEEE
T ss_pred HCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEEE
T ss_conf 23998779999999999865777234515699999999869806998899973688888888874189999989906998
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCHHHHHHH
Q ss_conf 346643323100003777652111567720
Q 000385 1241 DVGMNQISSFEAKVANGNGEQTLSRDVYRL 1270 (1588)
Q Consensus 1241 DvG~~qI~~Fe~Kia~G~gEQ~lSRd~yrL 1270 (1588)
||||+.....+.=--.+-.+|.--.+.||+
T Consensus 128 DvGfG~~~~~~Pl~l~~~~~~~~~~~~~r~ 157 (277)
T d1w4ta1 128 DVGFGSANPPRALPLPGDEADAGQVHCVRL 157 (277)
T ss_dssp CSCSGGGCCSSCEESSCCTTCTTCSEEEEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 403677685646237887531367517999
Done!