BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000387
(1588 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NDF8|PAPD5_HUMAN PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5
PE=1 SV=2
Length = 572
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 148/355 (41%), Gaps = 96/355 (27%)
Query: 1213 LHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDV 1272
LHEEI F + ++ K + V R+ ++ LWP + IFGS TGL LP+SD+
Sbjct: 120 LHEEISDFYEYMSPRPEEEKMRME-VVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDI 178
Query: 1273 DLVVC-----LPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVEN 1327
DLVV LP L ++EA L + DS+K ++
Sbjct: 179 DLVVFGKWENLP----LWTLEEA--------------------LRKHKVADEDSVKVLDK 214
Query: 1328 TAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVHSDMVALDDSASPKCSHT 1387
+PII L + T +K D S
Sbjct: 215 ATVPIIKLT---------------------DSFTEVKVD-----------------ISFN 236
Query: 1388 SSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQS 1447
+ ++AA ++ + T+++P L LVLKQFL R L++
Sbjct: 237 VQNGVRAADLIK--------------------DFTKKYPVLPYLVLVLKQFLLQRDLNEV 276
Query: 1448 YSGGLSSYCLMLLITRFLQ-HEHHLGRPINQNYGRLLMDFLYFFGNVFDPRQMRISVQGS 1506
++GG+ SY L L+ FLQ H N NYG LL++F +G F+ + I ++
Sbjct: 277 FTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYGVLLIEFFELYGRHFNYLKTGIRIKDG 336
Query: 1507 GVYIKRER-------GYSIDPIHIDDPRFPTNNVGRNCFRIHQCIKAFSDAYSIL 1554
G Y+ ++ GY ++I+DP P N+VGR+ + Q +AF AY +L
Sbjct: 337 GSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYVVL 391
>sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5
PE=2 SV=2
Length = 633
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 148/355 (41%), Gaps = 96/355 (27%)
Query: 1213 LHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDV 1272
LHEEI F + ++ K + V R+ ++ LWP + IFGS TGL LP+SD+
Sbjct: 134 LHEEISDFYEYMSPRPEEEKMRME-VVSRIESVIKELWPSADVQIFGSFKTGLYLPTSDI 192
Query: 1273 DLVVC-----LPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVEN 1327
DLVV LP L ++EA L + DS+K ++
Sbjct: 193 DLVVFGKWENLP----LWTLEEA--------------------LRKHKVADEDSVKVLDK 228
Query: 1328 TAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVHSDMVALDDSASPKCSHT 1387
+PII L + T +K D S
Sbjct: 229 ATVPIIKLT---------------------DSFTEVKVD-----------------ISFN 250
Query: 1388 SSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQS 1447
+ ++AA ++ + T+++P L LVLKQFL R L++
Sbjct: 251 VQNGVRAADLIK--------------------DFTKKYPVLPYLVLVLKQFLLQRDLNEV 290
Query: 1448 YSGGLSSYCLMLLITRFLQ-HEHHLGRPINQNYGRLLMDFLYFFGNVFDPRQMRISVQGS 1506
++GG+ SY L L+ FLQ H N NYG LL++F +G F+ + I ++
Sbjct: 291 FTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYGVLLIEFFELYGRHFNYLKTGIRIKDG 350
Query: 1507 GVYIKRER-------GYSIDPIHIDDPRFPTNNVGRNCFRIHQCIKAFSDAYSIL 1554
G Y+ ++ GY ++I+DP P N+VGR+ + Q +AF AY +L
Sbjct: 351 GSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYVVL 405
>sp|Q5XG87|PAPD7_HUMAN DNA polymerase sigma OS=Homo sapiens GN=PAPD7 PE=1 SV=2
Length = 542
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 15/206 (7%)
Query: 1364 KHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTE 1423
KH+ + LD + P T + T V++DISF TG++ + +K +
Sbjct: 70 KHNVAEPCSIKVLDKATVPIIKLTDQE-----TEVKVDISFNM--ETGVRAAEFIKNYMK 122
Query: 1424 QFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQ-HEHHLGRPINQNYGRL 1482
++ L LVLKQFL R L++ ++GG+SSY L+L+ FLQ H R ++N G L
Sbjct: 123 KYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLGML 182
Query: 1483 LMDFLYFFGNVFDPRQMRISVQGSGVYIKRER-------GYSIDPIHIDDPRFPTNNVGR 1535
L++F +G F+ + I ++ G YI +E GY + I+DP P N+VGR
Sbjct: 183 LVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGR 242
Query: 1536 NCFRIHQCIKAFSDAYSILESELTSL 1561
+ + Q + F AY +L ++ L
Sbjct: 243 SSYGAMQVKQVFDYAYIVLSHAVSPL 268
>sp|Q6PB75|PAPD7_MOUSE DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1
Length = 542
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 15/206 (7%)
Query: 1364 KHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTE 1423
KH+ + LD + P T + T V++DISF TG++ + +K +
Sbjct: 70 KHNVAEPCSIKVLDKATVPIIKLTDQE-----TEVKVDISFNM--ETGVRAAEFIKNYMK 122
Query: 1424 QFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQ-HEHHLGRPINQNYGRL 1482
++ L LVLKQFL R L++ ++GG+SSY L+L+ FLQ H R ++N G L
Sbjct: 123 KYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLGML 182
Query: 1483 LMDFLYFFGNVFDPRQMRISVQGSGVYIKRER-------GYSIDPIHIDDPRFPTNNVGR 1535
L++F +G F+ + I ++ G YI +E GY + I+DP P N+VGR
Sbjct: 183 LVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGR 242
Query: 1536 NCFRIHQCIKAFSDAYSILESELTSL 1561
+ + Q + F AY +L ++ L
Sbjct: 243 SSYGAMQVKQVFDYAYIVLSHAVSPL 268
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 27/102 (26%)
Query: 1238 AVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVC----LPPVRNLEPIKEAGIL 1293
VKR+ ++ LWP + IFGS +TGL LP+SD+DLVV PP++ LE
Sbjct: 14 VVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALR---- 69
Query: 1294 EGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIML 1335
++ + E C S+K ++ +PII L
Sbjct: 70 --KHNVAEPC-----------------SIKVLDKATVPIIKL 92
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cid14 PE=1 SV=2
Length = 684
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 100/196 (51%), Gaps = 10/196 (5%)
Query: 1396 TSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSY 1455
T V +DISF P GL+T +V +++PA PL +++K FL R+L++ + GGLSSY
Sbjct: 351 TKVHVDISFNQPG--GLKTCLVVNGFMKKYPALRPLVIIIKHFLNMRALNEVFLGGLSSY 408
Query: 1456 CLMLLITRFLQHEHHLGRPI---NQNYGRLLMDFLYFFGNVFDPRQMRISVQGSGVYIKR 1512
++ L+ FLQ L N+G LL++FL +G F + I+V G Y +
Sbjct: 409 AIVCLVVSFLQLHPRLSTGSMREEDNFGVLLLEFLELYGKQFYYDAVGIAVHNGGFYFSK 468
Query: 1513 ERGYSIDP-----IHIDDPRFPTNNVGRNCFRIHQCIKAFSDAYSILESELTSLTPADDQ 1567
++ + P + I DP N+V ++ + + F++ + +L S+L +L ++
Sbjct: 469 KKMGWLKPNQPYLLSIQDPVDFQNDVSKSSRGLLRVKATFANGFDLLTSKLYALASRIER 528
Query: 1568 CSRPPYRLLPKIIPSI 1583
+ P I+ +I
Sbjct: 529 EGVNRVKDFPSILSTI 544
Score = 41.2 bits (95), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 1194 LEVQNCP-TRKASLSL-MHSLLHEEIDSFCKQVA---AENTARKPYINWAVKRVTRSLQV 1248
L+ Q+CP R+ + + + H++I F + E+ RK V R+ +++
Sbjct: 220 LDSQSCPWHRQYKVEREVSRIFHQDILHFIDYITPTPEEHAVRKTL----VSRINQAVLQ 275
Query: 1249 LWPRSRTNIFGSNATGLSLPSSDVDLVVCLP 1279
WP +FGS T L LP+SD+DLV+ P
Sbjct: 276 KWPDVSLYVFGSFETKLYLPTSDLDLVIISP 306
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 136/343 (39%), Gaps = 88/343 (25%)
Query: 1236 NWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEAGILEG 1295
N + + +++ LWP + ++FGS +T L LP SD+D VV E G E
Sbjct: 201 NQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVT----------SELGGKES 250
Query: 1296 RNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPK 1355
RN + + LA + ++ V +PII V PH
Sbjct: 251 RNNLYSLASHLKKKNLATE-------VEVVAKARVPIIKFV--EPH-------------- 287
Query: 1356 EDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTT 1415
+ +H D+ S ++ I+AA
Sbjct: 288 -----------SGIHIDV-----------SFERTNGIEAAK------------------- 306
Query: 1416 DLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQ-HEHHLGRP 1474
L++E + P L L++KQFL R L+ ++GGL + ++ L+ FL H +
Sbjct: 307 -LIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNE 365
Query: 1475 IN--QNYGRLLMDFLYFFGNVFDPRQMRI-SVQGSGVYIKRERGYSIDPIH------IDD 1525
I+ N G LL++F +G F + + S G VY + +I PI I D
Sbjct: 366 IDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGYPVYFPKSTWSAIQPIKNPFSLAIQD 425
Query: 1526 PRFPTNNVGRNCFRIHQCIKAFSDAYSILES---ELTSLTPAD 1565
P +NN+ R F I KAF+ A+ +L + EL S T D
Sbjct: 426 PGDESNNISRGSFNIRDIKKAFAGAFDLLTNRCFELHSATFKD 468
>sp|G5EFL0|GLD4_CAEEL Poly(A) RNA polymerase gld-4 OS=Caenorhabditis elegans GN=gld-4 PE=1
SV=1
Length = 845
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 1396 TSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSY 1455
T + +DISF + G++ + ++ E+FP PL L+LKQFL R+L+Q+++GGLSSY
Sbjct: 191 TRLSIDISFNTVQ--GVRAASYIAKVKEEFPLIEPLVLLLKQFLHYRNLNQTFTGGLSSY 248
Query: 1456 CLMLLITRFLQ--HEHHLGRPINQ---NYGRLLMDFLYFFGNVFDPRQMRISVQGSGVYI 1510
L+LL+ F Q + R I N G LL+ FL + F+ +M IS G YI
Sbjct: 249 GLVLLLVNFFQLYALNMRSRTIYDRGVNLGHLLLRFLELYSLEFNFEEMGIS-PGQCCYI 307
Query: 1511 KR--------ERGYSIDPIHIDDPRFPTNNVGRNCFRIHQCIKAFSDAYSIL 1554
+ + + ++DP N+VGR+ + AF A+ IL
Sbjct: 308 PKSASGARYGHKQAQPGNLALEDPLLTANDVGRSTYNFSSIANAFGQAFQIL 359
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2
Length = 642
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 142/343 (41%), Gaps = 88/343 (25%)
Query: 1236 NWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEAGILEG 1295
N + ++ R+++ LW + ++FGS AT L LP SD+D C+ RN + E
Sbjct: 198 NRTIDKLRRAVKELWSDADLHVFGSFATDLYLPGSDID---CVVNSRNRDK-------ED 247
Query: 1296 RNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPK 1355
RN I E AR+L N+ + ++ + T +PII + P+
Sbjct: 248 RNYIYE-----LARHLKNKGL--AIRMEVIVKTRVPIIKFI----------------EPQ 284
Query: 1356 EDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTT 1415
+ +H D+ S ++ ++AA +R
Sbjct: 285 -----------SQLHIDV-----------SFERTNGLEAAKLIR---------------- 306
Query: 1416 DLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQ-HEHHLGRP 1474
E P L L++KQFL R L+ ++GGL + ++ L+ FL H
Sbjct: 307 ----EWLRDSPGLRELVLIIKQFLHSRRLNNVHTGGLGGFTVICLVYSFLNMHPRIKSND 362
Query: 1475 IN--QNYGRLLMDFLYFFGNVFDPRQMRISV-QGSGVYIKRERGYSIDP------IHIDD 1525
I+ N G LL+DF +G F + IS+ G YI + +++P + I D
Sbjct: 363 IDVLDNLGVLLIDFFELYGKNFGYDDVAISISDGYASYIPKSCWRTLEPSRSKFSLAIQD 422
Query: 1526 PRFPTNNVGRNCFRIHQCIKAFSDAYSILES---ELTSLTPAD 1565
P P NN+ R F + KAF+ A+ +L + EL S T D
Sbjct: 423 PGDPNNNISRGSFNMKDIKKAFAGAFELLVNKCWELNSATFKD 465
>sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5
PE=3 SV=1
Length = 626
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 136/342 (39%), Gaps = 90/342 (26%)
Query: 1236 NWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEAGILEG 1295
N A+KR+ ++Q WP + + FGS AT L LP SD+D VV ++G +
Sbjct: 217 NDALKRIRDAVQDFWPDANLHCFGSYATDLYLPGSDIDCVVN----------SKSGDKDN 266
Query: 1296 RNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPK 1355
+N + LA Q + + +PII V
Sbjct: 267 KNALYSLASYLKRNGLATQ-------VSVIAKARVPIIKFV------------------- 300
Query: 1356 EDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTT 1415
E A+ +H D+ S ++ ++AA +R L T
Sbjct: 301 EPAS--------QIHIDL-----------SFERTNGVEAAKIIR----------GWLHDT 331
Query: 1416 DLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQ-HEHHLGRP 1474
++EL L++KQFL R L+ + GGL + ++ L FL+ H + R
Sbjct: 332 PGLRELV----------LIVKQFLHARRLNDVHIGGLGGFSIICLAYSFLKLHPRIICRD 381
Query: 1475 IN--QNYGRLLMDFLYFFGNVFDPRQMRISV-QGSGVYIKRE---------RGYSIDPIH 1522
I QN G LL+DF +G F + I+V +G YI ++ RG +
Sbjct: 382 IEPLQNLGVLLIDFFELYGKNFGYDDVGIAVSEGDASYINKKEYPELTRNLRGTF--NLV 439
Query: 1523 IDDPRFPTNNVGRNCFRIHQCIKAFSDAYSILESELTSLTPA 1564
I DP P NN+ R F I KAF+ A+ +L + L A
Sbjct: 440 IQDPGDPANNISRGSFNIRDIKKAFAGAFELLTNRCFELDAA 481
>sp|O74518|CID12_SCHPO Poly(A) RNA polymerase cid12 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cid12 PE=1 SV=1
Length = 336
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 1391 NIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSG 1450
N+ + + +D++F + +T +L K E+ P L ++LK +L +R L+ + G
Sbjct: 119 NLVDVSGIGVDLTFGNDK--ACRTAELQKAYNEEHPIFGRLLMLLKHWLFERDLENVHHG 176
Query: 1451 GLSSYCLMLLITRFLQHEHHLGRPIN---QNYGRLLMDFLYFFGNVFDPRQMRISVQGSG 1507
G++S L ++ +L+ H + I+ Q LL F YF+G + +
Sbjct: 177 GIASCALSYMLIGWLEMRFH-KKGIDSEVQPIRALLQKFFYFWGVEWTYELFVLRPLTGQ 235
Query: 1508 VYIKRERGY--SIDP--IHIDDPRFPTNNVGRNCFRIHQCIKAF 1547
+ K ++G+ + P + I+DP N++G+ F+I AF
Sbjct: 236 IVPKLQKGWLNEVQPNLLSIEDPIDRNNDIGKQSFQISMIKAAF 279
>sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cid11 PE=3 SV=1
Length = 478
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 28/133 (21%)
Query: 1415 TDLVKELTEQFPASTPLALVLKQFLADRSL-DQSYSGGLSSYCLMLLITRFLQHEHHLGR 1473
T +++ P PL L++K + R+L D + SG ++SY + ++ FLQ +
Sbjct: 172 TKMLRLFVSIDPRVRPLGLIIKYWAKQRALCDAAGSGTITSYTISCMLVNFLQTRNPPIL 231
Query: 1474 P--------------------------INQ-NYGRLLMDFLYFFGNVFDPRQMRISVQGS 1506
P +N+ + GRLL+DF Y++G F+ +SV+
Sbjct: 232 PAMLDLMSNDDNKMFVDDIVGFKEKATLNKTSLGRLLIDFFYYYGFSFNYLDSVVSVRSG 291
Query: 1507 GVYIKRERGYSID 1519
V K+E+G++++
Sbjct: 292 TVLNKQEKGWAME 304
>sp|B2RX14|TUT4_MOUSE Terminal uridylyltransferase 4 OS=Mus musculus GN=Zcchc11 PE=1 SV=2
Length = 1644
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 1414 TTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHLGR 1473
TTDL+ L + P TPL L + + +D GG+ SYC L++ FLQ
Sbjct: 499 TTDLLAALGKVEPVFTPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQ------- 551
Query: 1474 PINQNYGRLLMDFLYFFGNVFDPRQM 1499
Q LL L + FDP++M
Sbjct: 552 ---QRKPPLLPCLLGSWIEGFDPKRM 574
>sp|Q5TAX3|TUT4_HUMAN Terminal uridylyltransferase 4 OS=Homo sapiens GN=ZCCHC11 PE=1 SV=3
Length = 1644
Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 1414 TTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHLGR 1473
TTDL+ L + P PL L + + +D GG+ SYC L++ FLQ
Sbjct: 479 TTDLLTALGKIEPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQ------- 531
Query: 1474 PINQNYGRLLMDFLYFFGNVFDPRQM 1499
Q LL L + FDP++M
Sbjct: 532 ---QRKPPLLPCLLGSWIEGFDPKRM 554
>sp|Q9VD44|GLD2A_DROME Poly(A) RNA polymerase gld-2 homolog A OS=Drosophila melanogaster
GN=Gld2 PE=1 SV=3
Length = 1364
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 37/145 (25%)
Query: 1398 VRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCL 1457
V +DI+F + G++ T L+ ++ P+AL +KQ+ +++ + + +SSY L
Sbjct: 1051 VEVDINFNN--SVGIRNTHLLYCYSQLDWRVRPMALTVKQWAQYHNINNAKNMTISSYSL 1108
Query: 1458 MLLITRFLQ----------------HEHHLGRPINQNY------------------GRLL 1483
ML++ FLQ + L +P + Y G LL
Sbjct: 1109 MLMVIHFLQVGASPPVLPCLHNLYPEKFGLLQPNDFGYVDMNEVMAPYQSDNSQTLGDLL 1168
Query: 1484 MDFLYFFGNVFDPRQMRISVQGSGV 1508
+ FL+++ +VFD + IS++ GV
Sbjct: 1169 LSFLHYY-SVFDYGKYAISIRVGGV 1192
>sp|Q503I9|GLD2_DANRE Poly(A) RNA polymerase GLD2 OS=Danio rerio GN=papd4 PE=2 SV=1
Length = 489
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 91/220 (41%), Gaps = 53/220 (24%)
Query: 1396 TSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSY 1455
+ V D++F + G++ T L++ PL LV+K++ ++ + G LSSY
Sbjct: 274 SGVEFDLNFNN--TVGIRNTFLLRTYAFVEKRVRPLVLVIKKWANHHCINDASRGTLSSY 331
Query: 1456 CLMLLITRFLQHEHHLGRPI----------------------------------NQ-NYG 1480
L+L++ +LQ L P+ NQ + G
Sbjct: 332 TLVLMVLHYLQ---TLPEPVIPCLQRDYPTCFDPKMDIHLVPSGPSDIPAFVSRNQSSLG 388
Query: 1481 RLLMDFLYFFGNVFDPRQMRISVQGSGVYIKRE-RGYSIDPIHIDDPRFPTNNVGRNCFR 1539
L + FL ++ VF + ISV+ + K + + I +++P F N R
Sbjct: 389 DLFLGFLRYYATVFKWDKQVISVRMARTLPKSNCKEWKDKFICVEEP-FNRTNTARA--- 444
Query: 1540 IHQCIK------AFSDAYSILE--SELTSLTPADDQCSRP 1571
+H+ +K AF +++ +L+ +L + P Q +RP
Sbjct: 445 VHERMKFEAIKAAFIESHRLLQLRKDLNFILPKSKQMARP 484
>sp|Q114R5|GRPE_TRIEI Protein GrpE OS=Trichodesmium erythraeum (strain IMS101) GN=grpE
PE=3 SV=1
Length = 242
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 550 TYNNPVPVKDPKVSVLETSSSISLQDEVEKYDKLSAQNVSVDNSTCSNVLASNQSSCTSA 609
T N + K P+V ET+ +VE +LSA N S+D +++ ++ +S
Sbjct: 10 TKNQEINEKTPEVQTFETNVEFESSQKVESDTELSADNASID----TDIQSTESTSKEKD 65
Query: 610 SVPAREGIATQSTQEDCV---VNSVNSECRR----FSNGRIDNQTQHFLQETTDSKVECN 662
V +E TQ + + S+ +R F N R Q + +E D++V+C+
Sbjct: 66 QVLLKEAYELLQTQLETTKYQLEEKESQYKRLGADFDNFRKRTQKE---KEDLDTQVKCS 122
Query: 663 IISPDMPARD 672
I +P D
Sbjct: 123 TIMELLPVID 132
>sp|Q2HJ44|GLD2_BOVIN Poly(A) RNA polymerase GLD2 OS=Bos taurus GN=PAPD4 PE=2 SV=1
Length = 484
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 32/127 (25%)
Query: 1410 TGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQH-- 1467
G++ T L++ PL LV+K++ + ++ + G LSSY L+L++ +LQ
Sbjct: 286 VGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHDINDASRGTLSSYSLVLMVLHYLQTLP 345
Query: 1468 -------------------EHHLGR--PIN---------QNYGRLLMDFLYFFGNVFDPR 1497
+ HL P N N G LL+ FL ++ FD
Sbjct: 346 EPILPSIQKIYPESFSPSIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWN 405
Query: 1498 QMRISVQ 1504
ISV+
Sbjct: 406 SQMISVR 412
>sp|Q6PIY7|GLD2_HUMAN Poly(A) RNA polymerase GLD2 OS=Homo sapiens GN=PAPD4 PE=1 SV=1
Length = 484
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 32/127 (25%)
Query: 1410 TGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQH-- 1467
G++ T L++ PL LV+K++ + ++ + G LSSY L+L++ +LQ
Sbjct: 286 VGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLP 345
Query: 1468 -------------------EHHLGR--PIN---------QNYGRLLMDFLYFFGNVFDPR 1497
+ HL P N N G LL+ FL ++ FD
Sbjct: 346 EPILPSLQKIYPESFSPAIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWN 405
Query: 1498 QMRISVQ 1504
ISV+
Sbjct: 406 SQMISVR 412
>sp|Q5U315|GLD2_RAT Poly(A) RNA polymerase GLD2 OS=Rattus norvegicus GN=Papd4 PE=2 SV=1
Length = 484
Score = 34.3 bits (77), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 13/151 (8%)
Query: 1132 SEEGCVRMDGSEVVWPSWRNKNLSAHPMIQPLSGALLQDHLIAISQLARDQEHPDVAFPL 1191
S+E R+DG + S + + ++ PLSG D ++ L P++ +
Sbjct: 79 SDEKAFRLDGKRQRFHSPHQEPTIINQLV-PLSG----DRRYSMPPLFHTHYVPEIVRCV 133
Query: 1192 QPL-EVQNCPTRKASLSLMHSLLHEEIDSF---CKQVAAENTARKPYINWAVKRVTRSLQ 1247
PL E+ R+ +L L ++I C+Q A++ ++ ++ R +Q
Sbjct: 134 PPLREIPLLEPREITLPEAKDKLSQQILELFETCQQQASDLKKKE----LCRAQLQREIQ 189
Query: 1248 VLWPRSRTNIFGSNATGLSLPSSDVDLVVCL 1278
+L+P+SR + GS+ G SSD DL + +
Sbjct: 190 LLFPQSRLFLVGSSLNGFGARSSDGDLCLVV 220
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 1410 TGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQ 1466
G++ T L++ PL LV+K++ + ++ + G LSSY L+L++ +LQ
Sbjct: 286 VGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHEINDASRGTLSSYSLVLMVLHYLQ 342
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,592,385
Number of Sequences: 539616
Number of extensions: 25899658
Number of successful extensions: 78068
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 77217
Number of HSP's gapped (non-prelim): 808
length of query: 1588
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1457
effective length of database: 120,879,763
effective search space: 176121814691
effective search space used: 176121814691
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)