Query 000387
Match_columns 1588
No_of_seqs 167 out of 1030
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 18:05:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000387.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_164-167//hhsearch_pdb/000387hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nyb_A Poly(A) RNA polymerase 1.0 1 1 434.9 26.9 309 1192-1580 2-321 (323)
2 4e8f_A Poly(A) RNA polymerase 1.0 1 1 409.8 27.1 286 1210-1578 41-376 (405)
3 4fh3_A Poly(A) RNA polymerase 1.0 1 1 392.9 25.8 272 1212-1557 15-336 (349)
4 2ikf_A RNA uridylyl transferas 1.0 1 1 387.7 23.4 279 1212-1555 27-349 (353)
5 2b4v_A RNA editing complex pro 1.0 1 1 386.2 24.5 331 1209-1558 16-441 (468)
6 3hj4_A Minor editosome-associa 1.0 1 1 379.5 19.9 279 1210-1560 4-370 (384)
7 3pq1_A Poly(A) RNA polymerase; 1.0 1 1 375.0 27.1 280 1212-1583 133-461 (464)
8 1q79_A Poly(A) polymerase alph 1.0 1 1 321.0 23.2 294 1185-1579 16-365 (514)
9 2hhp_A Poly(A) polymerase; tem 1.0 1 1 320.4 26.2 297 1212-1579 24-352 (530)
10 1r89_A TRNA nucleotidyltransfe 1.0 1 1 95.6 22.0 236 1214-1557 4-249 (437)
No 1
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=434.86 Aligned_cols=309 Identities=25% Similarity=0.432 Sum_probs=255.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 98757689873101235799999999999998223288502899999999999984108998147840344599899997
Q 000387 1192 QPLEVQNCPTRKASLSLMHSLLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSD 1271 (1588)
Q Consensus 1192 qpP~L~~cp~~k~slSlm~s~LheEI~aF~kyIsPEeeeRK~iIe~VIkRIe~IIQsLfPdAkV~lFGSsaTGLaLPsSD 1271 (1588)
|-||+.+....+ ...+...||+||.+|+++++|+.++++ .++.++++|+++++..||+++|++|||+++|+++|+||
T Consensus 2 ~~pw~~~~~~~~--~~~~~~~L~~Ei~~f~~~i~Pt~eE~~-~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SD 78 (323)
T 3nyb_A 2 SYPWILNHDHSK--QKEISDWLTFEIKDFVAYISPSREEIE-IRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSD 78 (323)
T ss_dssp CCGGGTTCCCTT--CSSHHHHHHHHHHHHHHHTSCCHHHHH-HHHHHHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSC
T ss_pred CCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf 999864877454--533999999999999998696999999-99999999999999988998799957635599899998
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEECCCCHHHHHHCCCC
Q ss_conf 06999848998986200013333554216899999999996058745677477047883199999736711231100256
Q 000387 1272 VDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSV 1351 (1588)
Q Consensus 1272 IDLVI~~PpvrnlEPiKeAGiLE~RN~IKetiLq~LAR~LRk~g~vks~sVqvI~nARVPIIKLv~~VP~DLs~~ya~~i 1351 (1588)
||++|..+... .+ ....|..+++.|++.+++. ++++|.+||||||||++
T Consensus 79 iDl~v~~~~~~----------~~-----~~~~l~~l~~~L~~~~~~~--~v~~I~~ArVPIIk~~~-------------- 127 (323)
T 3nyb_A 79 IDCVVTSELGG----------KE-----SRNNLYSLASHLKKKNLAT--EVEVVAKARVPIIKFVE-------------- 127 (323)
T ss_dssp EEEEECSSCCG----------GG-----HHHHHHHHHHHHHHTTSCS--SCEEEESSSCEEEEEEE--------------
T ss_pred CEEEEECCCCC----------HH-----HHHHHHHHHHHHHHCCCCE--EEEEEECCCCCEEEEEE--------------
T ss_conf 14999548887----------16-----7899999999985579842--79997515787799997--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 89864322223346776444211135889987778888753478760999985089971788999999998409970799
Q 000387 1352 QSPKEDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPL 1431 (1588)
Q Consensus 1352 ~SskE~pV~i~~~~~sp~~sDl~~sees~spkC~~vn~d~~D~~tGIsVDISFnNpsh~GLrSSeLIkeYieqfPrLRPL 1431 (1588)
..+|+.|||||++ .+|++++++|+.|+..+|++|+|
T Consensus 128 ------------------------------------------~~~gi~vDIs~~~--~~g~~~t~li~~~~~~~~~~r~l 163 (323)
T 3nyb_A 128 ------------------------------------------PHSGIHIAVSFER--TNGIEAAKLIREWLDDTPGLREL 163 (323)
T ss_dssp ------------------------------------------TTTTEEEEEESSC--SSTTHHHHHHHHHHHSCTTHHHH
T ss_pred ------------------------------------------CCCCCEEEEEECC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------------------------------5778068888437--38999999999997752528899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CC--CCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCC-
Q ss_conf 9999999982899877789852578999999998105768-99--8888499999999998515889999169963794-
Q 000387 1432 ALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHL-GR--PINQNYGRLLMDFLYFFGNVFDPRQMRISVQGSG- 1507 (1588)
Q Consensus 1432 VLVLK~WLKqRGLNDsysGGLSSYALvLMVIaFLQ~~p~L-GR--PiN~sLGeLLLdFLkFYGneFDY~k~vISIr~gG- 1507 (1588)
++++|+|++++||++++.||||||+|++||++|||.+|.. .. +...++|+||++||+|||.+|||.+.+||++.++
T Consensus 164 v~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~~ 243 (323)
T 3nyb_A 164 VLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGYP 243 (323)
T ss_dssp HHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCCTTTEEEEESSSCE
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
T ss_conf 99999999974999765798477999999999997488667666786245999999999996360689971799844986
Q ss_pred CCCCCCCCC-------CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 221136889-------9999498399999996554721299999999999999999763029999889999899842324
Q 000387 1508 VYIKRERGY-------SIDPIHIDDPRFPTNNVGRNCFRIHQCIKAFSDAYSILESELTSLTPADDQCSRPPYRLLPKII 1580 (1588)
Q Consensus 1508 iy~KKerG~-------s~~pL~IEDPlDpsNNIGRssfrI~qIqkaFarAyeiLs~eL~~~as~~~~c~~~~~~Ll~~ii 1580 (1588)
.+..+. .| ...+|+|+||++++||+|++++++..|+.+|++||++|.+.+.++.+..-. .+....+|..||
T Consensus 244 ~~~~k~-~~~~~~~~~~~~~l~IeDP~~~~~nigr~~~~~~~I~~~F~~A~~~L~~~~~~~~~~~~~-~~~~~s~l~~ii 321 (323)
T 3nyb_A 244 VYFPKS-TWSAIQPIKNPFSLAIQDPGDESNNISRGSFNIRDIKKAFAGAFDLLTNRCFELHSATFK-DRLGKSILGNVI 321 (323)
T ss_dssp EEEEGG-GCGGGCSCSCSSSCCBEETTEEEEETTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTSCHH-HHTTCCSSTTTS
T ss_pred CEEEHH-HCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHH
T ss_conf 044677-601002467775379868998776456464879999999999999999864552111056-888886168763
No 2
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=1.00 E-value=1 Score=409.84 Aligned_cols=286 Identities=24% Similarity=0.336 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 99999999999998223288502899999999999984108998147840344599899997069998489989862000
Q 000387 1210 HSLLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKE 1289 (1588)
Q Consensus 1210 ~s~LheEI~aF~kyIsPEeeeRK~iIe~VIkRIe~IIQsLfPdAkV~lFGSsaTGLaLPsSDIDLVI~~PpvrnlEPiKe 1289 (1588)
...|+.||.+|+++++|+.++++ .++.++.+|+.+++..||+++|++|||+++|+++|+||||++|..+... +.
T Consensus 41 ~~~L~~~i~~~~~~i~Pt~eE~~-~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~--~~--- 114 (405)
T 4e8f_A 41 HKEFTKFCYEVYNEIKISDKEFK-EKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRV--QS--- 114 (405)
T ss_dssp CHHHHHHHHHHHHHHBCCHHHHH-HHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC-----C---
T ss_pred HHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCC--CH---
T ss_conf 99999999999998097999999-9999999999999987899779998555479989999978999726899--99---
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13333554216899999999996058745677477047883199999736711231100256898643222233467764
Q 000387 1290 AGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHV 1369 (1588)
Q Consensus 1290 AGiLE~RN~IKetiLq~LAR~LRk~g~vks~sVqvI~nARVPIIKLv~~VP~DLs~~ya~~i~SskE~pV~i~~~~~sp~ 1369 (1588)
.+.+..+++.|++. . .+++.|.+||||||||+.+...
T Consensus 115 -----------~~~l~~l~~~L~~~-~---~~v~~i~~ArVPIIK~~~d~~~---------------------------- 151 (405)
T 4e8f_A 115 -----------DTIALQFYEELIAE-G---FEGKFLQRARIPIIKLTSDTKN---------------------------- 151 (405)
T ss_dssp -----------TTHHHHHHHHHHHT-T---EEEEEEEETTEEEEEEEEESSS----------------------------
T ss_pred -----------HHHHHHHHHHHHHC-C---CEEEEECCCCCCEEEEEECCCC----------------------------
T ss_conf -----------99999999999860-7---7448862577867999961477----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 44211135889987778888753478760999985089971788999999998409970799999999998289987778
Q 000387 1370 HSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYS 1449 (1588)
Q Consensus 1370 ~sDl~~sees~spkC~~vn~d~~D~~tGIsVDISFnNpsh~GLrSSeLIkeYieqfPrLRPLVLVLK~WLKqRGLNDsys 1449 (1588)
....|+.|||||++ ..|+.++.+++.|.+.+|++|+|+++||+|++.++|++++.
T Consensus 152 -----------------------g~~~gi~~DIs~~n--~~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~ 206 (405)
T 4e8f_A 152 -----------------------GFGASFQCDIGFNN--RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYF 206 (405)
T ss_dssp -----------------------SCCTTCCEEEEESC--HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTT
T ss_pred -----------------------CCCCCEEEEEEECC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf -----------------------76686489876245--41577799999998618788999999999999748986757
Q ss_pred CCCCHHHHHHHHHHHH-HCCC-----CCC--------------------------CCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 9852578999999998-1057-----689--------------------------9888849999999999851588999
Q 000387 1450 GGLSSYCLMLLITRFL-QHEH-----HLG--------------------------RPINQNYGRLLMDFLYFFGNVFDPR 1497 (1588)
Q Consensus 1450 GGLSSYALvLMVIaFL-Q~~p-----~LG--------------------------RPiN~sLGeLLLdFLkFYGneFDY~ 1497 (1588)
||||||+|++||++|| |... .+. .....++|+||++||+|||.+|||.
T Consensus 207 GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~ 286 (405)
T 4e8f_A 207 GTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPR 286 (405)
T ss_dssp TSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 98576999999999997235887577043236666655177540101042432266663569999999999972026899
Q ss_pred CCEEEEE-CCCCCCCCCCCCC---------------CCCEEEECCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9169963-7942211368899---------------99949839999999655472--1299999999999999999763
Q 000387 1498 QMRISVQ-GSGVYIKRERGYS---------------IDPIHIDDPRFPTNNVGRNC--FRIHQCIKAFSDAYSILESELT 1559 (1588)
Q Consensus 1498 k~vISIr-~gGiy~KKerG~s---------------~~pL~IEDPlDpsNNIGRss--frI~qIqkaFarAyeiLs~eL~ 1559 (1588)
+.+||++ .++.+.+.+++|. ..+|+|+||+++++|+||++ +++..|+.+|++|+++|.+...
T Consensus 287 ~~vIsir~~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~ 366 (405)
T 4e8f_A 287 EKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY 366 (405)
T ss_dssp TBEECSSSTTCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 84799816886333200155653344554222356776279978887565555677889999999999999999852035
Q ss_pred HCCCCCCCCCCCCCCCCCC
Q ss_conf 0299998899998998423
Q 000387 1560 SLTPADDQCSRPPYRLLPK 1578 (1588)
Q Consensus 1560 ~~as~~~~c~~~~~~Ll~~ 1578 (1588)
..+|-.||++
T Consensus 367 ---------~~~w~~Lf~~ 376 (405)
T 4e8f_A 367 ---------PIPYDSLFEE 376 (405)
T ss_dssp ---------SCCGGGGGSC
T ss_pred ---------CCCHHHHHCC
T ss_conf ---------8989998286
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=1.00 E-value=1 Score=392.86 Aligned_cols=272 Identities=24% Similarity=0.348 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99999999999822328850289999999999998410899814784034459989999706999848998986200013
Q 000387 1212 LLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEAG 1291 (1588)
Q Consensus 1212 ~LheEI~aF~kyIsPEeeeRK~iIe~VIkRIe~IIQsLfPdAkV~lFGSsaTGLaLPsSDIDLVI~~PpvrnlEPiKeAG 1291 (1588)
.|.+.+.+++++++|++++.+ .++.++++|+.+|+..||+++|++|||++|||++|+||||++|..+....
T Consensus 15 el~~~~~~l~~~~~pt~~e~~-~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~-------- 85 (349)
T 4fh3_A 15 EFTKFCYEVYNEIKISDKEFK-EKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQ-------- 85 (349)
T ss_dssp HHHHHHHHHHHHHBCCHHHHH-HHHHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSC--------
T ss_pred HHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCC--------
T ss_conf 999999999997098999999-99999999999999988998999971144789997989779996588878--------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33355421689999999999605874567747704788319999973671123110025689864322223346776444
Q 000387 1292 ILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVHS 1371 (1588)
Q Consensus 1292 iLE~RN~IKetiLq~LAR~LRk~g~vks~sVqvI~nARVPIIKLv~~VP~DLs~~ya~~i~SskE~pV~i~~~~~sp~~s 1371 (1588)
.......+...+.... .+++.|.+||||||||+++...
T Consensus 86 --------~~~~~~~~~~~~~~~~----~~~~~i~~ArVPiik~~~~~~~------------------------------ 123 (349)
T 4fh3_A 86 --------SDTIALQFYEELIAEG----FEGKFLQRARIPIIKLTSDTKN------------------------------ 123 (349)
T ss_dssp --------HHHHHHHHHHHHHHTT----EEEEEEEETTEEEEEEEEESSS------------------------------
T ss_pred --------HHHHHHHHHHHHHHHC----CCCEEEEEEEEEEEEEEECCCC------------------------------
T ss_conf --------5899999999987501----4655755404335999841456------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 21113588998777888875347876099998508997178899999999840997079999999999828998777898
Q 000387 1372 DMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGG 1451 (1588)
Q Consensus 1372 Dl~~sees~spkC~~vn~d~~D~~tGIsVDISFnNpsh~GLrSSeLIkeYieqfPrLRPLVLVLK~WLKqRGLNDsysGG 1451 (1588)
....++.|||||++ .+|++++++|+.|...+|++|+|+++||+|++.+||++++.||
T Consensus 124 ---------------------~~~~~~~~Dis~~~--~~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~ 180 (349)
T 4fh3_A 124 ---------------------GFGASFQCDIGFNN--RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGT 180 (349)
T ss_dssp ---------------------SSCTTCCEEEEESC--HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTS
T ss_pred ---------------------CCCCCCEEECCCCC--CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf ---------------------64356245467676--2688899999998620877889999999999984999867898
Q ss_pred CCHHHHHHHHHHHHHCCCC------CC--------------------------CCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 5257899999999810576------89--------------------------988884999999999985158899991
Q 000387 1452 LSSYCLMLLITRFLQHEHH------LG--------------------------RPINQNYGRLLMDFLYFFGNVFDPRQM 1499 (1588)
Q Consensus 1452 LSSYALvLMVIaFLQ~~p~------LG--------------------------RPiN~sLGeLLLdFLkFYGneFDY~k~ 1499 (1588)
||||+|++|||+|||+... +. .....++|+||++||+|||.+|||.+.
T Consensus 181 lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~ 260 (349)
T 4fh3_A 181 LSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREK 260 (349)
T ss_dssp CCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTB
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 77299999999999734678768066644545663135763554420333255447543899999999986420587784
Q ss_pred EEEEECCCCCCC-CCCCCC---------------CCCEEEECCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHH
Q ss_conf 699637942211-368899---------------99949839999999655472--12999999999999999997
Q 000387 1500 RISVQGSGVYIK-RERGYS---------------IDPIHIDDPRFPTNNVGRNC--FRIHQCIKAFSDAYSILESE 1557 (1588)
Q Consensus 1500 vISIr~gGiy~K-KerG~s---------------~~pL~IEDPlDpsNNIGRss--frI~qIqkaFarAyeiLs~e 1557 (1588)
+||++.++.+.. .+++|. ..+|+|+||+++++|+||++ +++..|+.+|++|+++|.+.
T Consensus 261 vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~ 336 (349)
T 4fh3_A 261 VVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSR 336 (349)
T ss_dssp CBCSSSTTCCCBHHHHTCC---------------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 6984389886556774344444456753345778835999899989873799989899999999999999997274
No 4
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=1.00 E-value=1 Score=387.65 Aligned_cols=279 Identities=23% Similarity=0.330 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC-CCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 99999999999822328-8502899999999999984108998147840344-599899997069998489989862000
Q 000387 1212 LLHEEIDSFCKQVAAEN-TARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNA-TGLSLPSSDVDLVVCLPPVRNLEPIKE 1289 (1588)
Q Consensus 1212 ~LheEI~aF~kyIsPEe-eeRK~iIe~VIkRIe~IIQsLfPdAkV~lFGSsa-TGLaLPsSDIDLVI~~PpvrnlEPiKe 1289 (1588)
.|+.+|.++++...+.. +.|+ ++.++++|+++++.+||+++|++|||++ |||++|+||||++|..+.. .+.-+.
T Consensus 27 ~l~~~l~~~~~~~~~~~~e~~~--r~~~~~~l~~~i~~~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~--~~~~~~ 102 (353)
T 2ikf_A 27 VVGRSLVNSFKQFVSKDLHTRH--VDATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTD--VEDGKG 102 (353)
T ss_dssp HHHHHHHHHTTTTCC-----CC--HHHHHHHHHHHHHHHCTTCEEEEESHHHHHSSCCTTCCEEEEEECHHH--HHSTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCC--CCCCCC
T ss_conf 9999999999985587011999--999999999999998899089982376416889987662389862555--566644
Q ss_pred C-CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1-333355421689999999999605874567747704788319999973671123110025689864322223346776
Q 000387 1290 A-GILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNH 1368 (1588)
Q Consensus 1290 A-GiLE~RN~IKetiLq~LAR~LRk~g~vks~sVqvI~nARVPIIKLv~~VP~DLs~~ya~~i~SskE~pV~i~~~~~sp 1368 (1588)
. ...+.......+++..+++.|++.+++. +++.|.+||||||||++
T Consensus 103 ~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~--~v~~i~~ArVPIiK~~~------------------------------- 149 (353)
T 2ikf_A 103 GDAATQVAKGLQADILAKLARVIRQKHLSW--NVEEVRRTRVPVVRVKG------------------------------- 149 (353)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHCTTS--EEEEECSSSSCEEEEEC-------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCC--CEEEECCCCEEEEEEEC-------------------------------
T ss_conf 330244555669999999999998368887--46994246636999985-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 44421113588998777888875347876099998508997178899999999840997079999999999828998777
Q 000387 1369 VHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSY 1448 (1588)
Q Consensus 1369 ~~sDl~~sees~spkC~~vn~d~~D~~tGIsVDISFnNpsh~GLrSSeLIkeYieqfPrLRPLVLVLK~WLKqRGLNDsy 1448 (1588)
.+++.|||||++ .+|++++++|+.|.+.+|++|+|+++||+|++.++|++++
T Consensus 150 --------------------------~~~i~~Dis~~n--~~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~ 201 (353)
T 2ikf_A 150 --------------------------GGAVDFDITAYR--RNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASV 201 (353)
T ss_dssp --------------------------SSSCEEEEEESC--CHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTS
T ss_pred --------------------------CCCCEEEEEECC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf --------------------------897179988258--5389999999999986922999999999999986999877
Q ss_pred C-CCCCHHHHHHHHHHHHHCCC---CCC---------------------CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 8-98525789999999981057---689---------------------9888849999999999851588999916996
Q 000387 1449 S-GGLSSYCLMLLITRFLQHEH---HLG---------------------RPINQNYGRLLMDFLYFFGNVFDPRQMRISV 1503 (1588)
Q Consensus 1449 s-GGLSSYALvLMVIaFLQ~~p---~LG---------------------RPiN~sLGeLLLdFLkFYGneFDY~k~vISI 1503 (1588)
. ||||||+|++||++|||... .+- ...+.++|+||++||+|||.+|||.+.+||+
T Consensus 202 ~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi 281 (353)
T 2ikf_A 202 IGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISL 281 (353)
T ss_dssp TTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECS
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 79983499999999999972688997681116765515777677656677784559999999999963205767428976
Q ss_pred ECCCCCCCCCCCCC--------------CCCEEEECCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 37942211368899--------------999498399999996554721--29999999999999999
Q 000387 1504 QGSGVYIKRERGYS--------------IDPIHIDDPRFPTNNVGRNCF--RIHQCIKAFSDAYSILE 1555 (1588)
Q Consensus 1504 r~gGiy~KKerG~s--------------~~pL~IEDPlDpsNNIGRssf--rI~qIqkaFarAyeiLs 1555 (1588)
+.+|.+.+.+.+|. ..+|+|+||+++++|+|++++ ++..|+.+|++|++++.
T Consensus 282 ~~~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~~ 349 (353)
T 2ikf_A 282 NRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTAL 349 (353)
T ss_dssp SSSSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCEECHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 79960240430445332311113577776638998999999865679898999999999999999999
No 5
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=1.00 E-value=1 Score=386.24 Aligned_cols=331 Identities=16% Similarity=0.186 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC-CCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 799999999999998223-28850289999999999998410899814784034-4599899997069998489989862
Q 000387 1209 MHSLLHEEIDSFCKQVAA-ENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSN-ATGLSLPSSDVDLVVCLPPVRNLEP 1286 (1588)
Q Consensus 1209 m~s~LheEI~aF~kyIsP-EeeeRK~iIe~VIkRIe~IIQsLfPdAkV~lFGSs-aTGLaLPsSDIDLVI~~PpvrnlEP 1286 (1588)
-...|+..|.++.....+ |++.|. ...++++|+.+++.+||+++|++|||+ .+||++|+||||||+..++. ...
T Consensus 16 ~~~~~~~~i~~~~~~~~~~~~~~~~--~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~--~~~ 91 (468)
T 2b4v_A 16 HYAVWGKAIMAENNRRVGPEHMFRT--AIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDDP--YPS 91 (468)
T ss_dssp HHHHHHHHHHHHHHHHBCCHHHHHH--HHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSSS--SCC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCCCEEEEEECCCC--CCC
T ss_conf 9999999999999724998899999--999999999999997799489984173102789999863689834887--766
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCCCCCCEEEECCCCCCEEEEEECCCCHH---------HHH----HCCCC
Q ss_conf 0001333355421689999999999605--87456774770478831999997367112---------311----00256
Q 000387 1287 IKEAGILEGRNGIKETCLQHAARYLANQ--EWVKSDSLKTVENTAIPIIMLVVEVPHDL---------IAS----AASSV 1351 (1588)
Q Consensus 1287 iKeAGiLE~RN~IKetiLq~LAR~LRk~--g~vks~sVqvI~nARVPIIKLv~~VP~DL---------s~~----ya~~i 1351 (1588)
... .+ ..+..+++.|++. ++. ..++++|.+||||||||+... .|. ... .-..+
T Consensus 92 -------~~~-~~--~~~~~l~~~L~~~~~~~~-~~~v~~I~~ArVPIIK~~~~~-~d~~~~~~~~~l~~~~~~~~~~~l 159 (468)
T 2b4v_A 92 -------HEV-QA--KRTDKLRTVIKRYVPHYL-RNNLLGLTEARTPVVKLRFAN-DEKVARARYTPLSEEEDRKARTAL 159 (468)
T ss_dssp -------HHH-HH--HHHHHHHHHHHTTSCHHH-HTTEEEECSSSSCEEEECCCC-HHHHHHHHHSCCCHHHHHHHTEEE
T ss_pred -------CHH-HH--HHHHHHHHHHHHHCCCCC-CCEEEECCCCCCCEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -------113-57--789999999997224665-210586157874369999546-653211112333333232210000
Q ss_pred -------CCCCC--------CCCCC--CCCCCCCCC--CCCCCCC------------CCCCCCC--------CCCCCCCC
Q ss_conf -------89864--------32222--334677644--4211135------------8899877--------78888753
Q 000387 1352 -------QSPKE--------DAAHT--TLKHDNHVH--SDMVALD------------DSASPKC--------SHTSSDNI 1392 (1588)
Q Consensus 1352 -------~SskE--------~pV~i--~~~~~sp~~--sDl~~se------------es~spkC--------~~vn~d~~ 1392 (1588)
..++| ++.++ +.++.++.. .|+.+.. +...... -.++.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf~ 239 (468)
T 2b4v_A 160 LDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFV 239 (468)
T ss_dssp EEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTSC
T ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 01111111221000001100211222212234565543013215641022210013432101223222212233222246
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-
Q ss_conf 47876099998508997178899999999840997-0799999999998289987778985257899999999810576-
Q 000387 1393 KAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPA-STPLALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHH- 1470 (1588)
Q Consensus 1393 D~~tGIsVDISFnNpsh~GLrSSeLIkeYieqfPr-LRPLVLVLK~WLKqRGLNDsysGGLSSYALvLMVIaFLQ~~p~- 1470 (1588)
|..++++|||||+ .+|++||++|+.|.+.+|+ +|+|+++||+|++.++||+++.||||||+|++|||+|||....
T Consensus 240 ~~~~gi~~DISfn---~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~l 316 (468)
T 2b4v_A 240 PEMFMYRWDISFV---GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQV 316 (468)
T ss_dssp CGGGSSCEEEESC---SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCEEEEEECC---HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 5456627997446---4699999999999843839899999999999998699974679802899999999999862767
Q ss_pred -------------CCC---------CCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCC---------C
Q ss_conf -------------899---------888849999999999851588999916996379422113688999---------9
Q 000387 1471 -------------LGR---------PINQNYGRLLMDFLYFFGNVFDPRQMRISVQGSGVYIKRERGYSI---------D 1519 (1588)
Q Consensus 1471 -------------LGR---------PiN~sLGeLLLdFLkFYGneFDY~k~vISIr~gGiy~KKerG~s~---------~ 1519 (1588)
+.+ ....++|+||++||+|||.+|||.+.+||++.++.+.+.+.+|.. .
T Consensus 317 P~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g~~~~K~~~~w~~~~n~~~~~~~ 396 (468)
T 2b4v_A 317 LWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNKKGTFSY 396 (468)
T ss_dssp CCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSSCEEHHHHTCCCGGGEETTEEC
T ss_pred CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf 77785346646556666677851246856799999999999703068898579844895035410145654455677754
Q ss_pred CEEEECCCCC----CCCCCCCC--CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9498399999----99655472--129999999999999999976
Q 000387 1520 PIHIDDPRFP----TNNVGRNC--FRIHQCIKAFSDAYSILESEL 1558 (1588)
Q Consensus 1520 pL~IEDPlDp----sNNIGRss--frI~qIqkaFarAyeiLs~eL 1558 (1588)
+|+|+||+++ .+|+|+++ +++..|+.+|.+|+++|++..
T Consensus 397 ~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 397 NFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp SSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 389989998877788466988898999999999999999998634
No 6
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=1.00 E-value=1 Score=379.46 Aligned_cols=279 Identities=15% Similarity=0.253 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 99999999999998223288502899999999999984108998147840344599899997069998489989862000
Q 000387 1210 HSLLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKE 1289 (1588)
Q Consensus 1210 ~s~LheEI~aF~kyIsPEeeeRK~iIe~VIkRIe~IIQsLfPdAkV~lFGSsaTGLaLPsSDIDLVI~~PpvrnlEPiKe 1289 (1588)
.+.|++||.+|++|++|+.++.+ .++.++++|+++++..||+++|++|||++|||++|+||||+||..+... +.-.
T Consensus 4 ~~~lt~EI~dFy~~i~PT~eE~~-~R~~vv~~l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~---~~~~ 79 (384)
T 3hj4_A 4 KREFIRGMMAHYRASLPPPEHSV-VIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFS---PWLQ 79 (384)
T ss_dssp HHHHHHHHHHHHHHHSCCTTHHH-HHHHHHHHHHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTCC---GGGT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCC---CCCC
T ss_conf 66789999999997399989999-9999999999999987899679995145578989999856999637876---4223
Q ss_pred CCCCCCCCCHHHHH--HHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 13333554216899--9999999960587456774770478831999997367112311002568986432222334677
Q 000387 1290 AGILEGRNGIKETC--LQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDN 1367 (1588)
Q Consensus 1290 AGiLE~RN~IKeti--Lq~LAR~LRk~g~vks~sVqvI~nARVPIIKLv~~VP~DLs~~ya~~i~SskE~pV~i~~~~~s 1367 (1588)
+ ++.+. +... +..+.+.+...++ ..+. |.+||||||||++
T Consensus 80 -~-~~~~~--~~~~lrll~L~k~~~~~~i---e~V~-ii~ARVPIIKf~d------------------------------ 121 (384)
T 3hj4_A 80 -G-MERVD--EQNNKRMTRFGKEASAMGM---EDVR-YIRARIPVVQFTD------------------------------ 121 (384)
T ss_dssp -T-CHHHH--HHHHHHHHHHHHHHHHHTC---EEEE-EECSSSCEEEEEC------------------------------
T ss_pred -C-CCHHH--HHHHHHHHHHHHHCCCCCE---EEEE-ECCCCCCEEEEEE------------------------------
T ss_conf -2-11056--7889999999730433770---5873-3486457799998------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCC
Q ss_conf 64442111358899877788887534787609999850899717889999999984099-70799999999998289987
Q 000387 1368 HVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFP-ASTPLALVLKQFLADRSLDQ 1446 (1588)
Q Consensus 1368 p~~sDl~~sees~spkC~~vn~d~~D~~tGIsVDISFnNpsh~GLrSSeLIkeYieqfP-rLRPLVLVLK~WLKqRGLND 1446 (1588)
..+|+.|||||+| ..|+.++++|+.|.+.+| ++|+|++++|+|++.++|++
T Consensus 122 --------------------------~~tgi~~DIS~nn--~~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~ 173 (384)
T 3hj4_A 122 --------------------------GVTGIHCDVSIGN--IGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIA 173 (384)
T ss_dssp --------------------------TTTCCEEEEEECC--HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBC
T ss_pred --------------------------CCCCEEEEEEECC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf --------------------------6889079899626--504899999999874286989999999999999838997
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCC---CCC-----------------------C-------CCCCHHHH----HHHHHHH
Q ss_conf 778985257899999999810576---899-----------------------8-------88849999----9999998
Q 000387 1447 SYSGGLSSYCLMLLITRFLQHEHH---LGR-----------------------P-------INQNYGRL----LMDFLYF 1489 (1588)
Q Consensus 1447 sysGGLSSYALvLMVIaFLQ~~p~---LGR-----------------------P-------iN~sLGeL----LLdFLkF 1489 (1588)
++.||||||+|++|||+|||..+. +.. + ...+||+| |++||+|
T Consensus 174 ~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~y 253 (384)
T 3hj4_A 174 PERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEY 253 (384)
T ss_dssp GGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 66899408999999999994389898646532248854356607666540378876767888155998877799999998
Q ss_pred HCCCCCCCCCEEEEECCCCCC----------------CCCCCC------------------------------CCCCEEE
Q ss_conf 515889999169963794221----------------136889------------------------------9999498
Q 000387 1490 FGNVFDPRQMRISVQGSGVYI----------------KRERGY------------------------------SIDPIHI 1523 (1588)
Q Consensus 1490 YGneFDY~k~vISIr~gGiy~----------------KKerG~------------------------------s~~pL~I 1523 (1588)
|+ +|||.+.+|||+.++... ++.++| ..+++.|
T Consensus 254 Y~-~Fdf~~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (384)
T 3hj4_A 254 YA-KYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVV 332 (384)
T ss_dssp HH-HCCTTTBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCB
T ss_pred HE-ECCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 62-44888877995177666553101112123100403540246654035667888987533456752100566662552
Q ss_pred ECCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 39999999655472--12999999999999999997630
Q 000387 1524 DDPRFPTNNVGRNC--FRIHQCIKAFSDAYSILESELTS 1560 (1588)
Q Consensus 1524 EDPlDpsNNIGRss--frI~qIqkaFarAyeiLs~eL~~ 1560 (1588)
|| |...+|+||.+ .++..|+.+|++|+++|.++...
T Consensus 333 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (384)
T 3hj4_A 333 ED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKESE 370 (384)
T ss_dssp BC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTTTGGG
T ss_pred EE-ECCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 20-001123010317640059999999999998563136
No 7
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=375.03 Aligned_cols=280 Identities=17% Similarity=0.287 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99999999999822328850289999999999998410899814784034459989999706999848998986200013
Q 000387 1212 LLHEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEAG 1291 (1588)
Q Consensus 1212 ~LheEI~aF~kyIsPEeeeRK~iIe~VIkRIe~IIQsLfPdAkV~lFGSsaTGLaLPsSDIDLVI~~PpvrnlEPiKeAG 1291 (1588)
.|++||.+|+++++|++++.+ .++.++++|+++++..||+++|++|||++|||++|+|||||||..+.....+..+..|
T Consensus 133 sl~~EI~~f~~~i~PT~eE~~-~R~~vv~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~~~~g 211 (464)
T 3pq1_A 133 SIDDQLNTLLKEFQLTEENTK-LRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHKISG 211 (464)
T ss_dssp SHHHHHHHHHHHHBCCHHHHH-HHHHHHHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCSCEEC
T ss_pred HHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 178999999998699999999-9999999999999987899879996877248889999957999647755554323566
Q ss_pred -C-CC--------CCCCHHHHHHHHHHHHHHHCC-CCCCCCEEEECCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf -3-33--------554216899999999996058-745677477047883199999736711231100256898643222
Q 000387 1292 -I-LE--------GRNGIKETCLQHAARYLANQE-WVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAH 1360 (1588)
Q Consensus 1292 -i-LE--------~RN~IKetiLq~LAR~LRk~g-~vks~sVqvI~nARVPIIKLv~~VP~DLs~~ya~~i~SskE~pV~ 1360 (1588)
+ ++ .|. ....+|..+++.|++.. .+ .+++.|.+||||||||++
T Consensus 212 ~~~le~~~k~l~seR~-~~~~iL~~la~~L~~~~~~~--~~v~~I~~ARVPIIKf~~----------------------- 265 (464)
T 3pq1_A 212 NFLMEFQVKNVPSERI-ATQKILSVLGECLDHFGPGC--VGVQKILNARCPLVRFSH----------------------- 265 (464)
T ss_dssp C---EECCCCCSCHHH-HHHHHHHHHHHHHHHSSTTE--EEEEEECSSSSCEEEEEE-----------------------
T ss_pred CHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHCCCCC--CEEEEECCCCCCEEEEEE-----------------------
T ss_conf 3134554124435677-89999999999998438997--326885378987799998-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 23346776444211135889987778888753478760999985089971788999999998409970799999999998
Q 000387 1361 TTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPLALVLKQFLA 1440 (1588)
Q Consensus 1361 i~~~~~sp~~sDl~~sees~spkC~~vn~d~~D~~tGIsVDISFnNpsh~GLrSSeLIkeYieqfPrLRPLVLVLK~WLK 1440 (1588)
..+|+.|||||+| ..|+.++++|+.|...+|++|+|++++|+|++
T Consensus 266 ---------------------------------~~tgi~~DIS~nn--~~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak 310 (464)
T 3pq1_A 266 ---------------------------------QASGFQCALTTNN--RIALTSSELLYIYGALDSRVRALVFSVRCWAR 310 (464)
T ss_dssp ---------------------------------TTTCCEEEEECSC--TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------CCCCEEEEEECCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf ---------------------------------5788389984688--72899999999998748218899999999999
Q ss_pred HCCCCCCCCCC-CCHHHHHHHHHHHHHCCC-----CCC------------------------------CCCCCCHHHHHH
Q ss_conf 28998777898-525789999999981057-----689------------------------------988884999999
Q 000387 1441 DRSLDQSYSGG-LSSYCLMLLITRFLQHEH-----HLG------------------------------RPINQNYGRLLM 1484 (1588)
Q Consensus 1441 qRGLNDsysGG-LSSYALvLMVIaFLQ~~p-----~LG------------------------------RPiN~sLGeLLL 1484 (1588)
.++|++++.|| |+||+|++|||+|||... .+. ..+..++|+||+
T Consensus 311 ~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~ 390 (464)
T 3pq1_A 311 AHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLK 390 (464)
T ss_dssp HTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC---------------------CCCCCCHHHHHH
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCHHHHHH
T ss_conf 80998656699767399999999999715998489767823213755441224645664341766378888577999999
Q ss_pred HHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99998515889999169963794221136889999949839999999655472--1299999999999999999763029
Q 000387 1485 DFLYFFGNVFDPRQMRISVQGSGVYIKRERGYSIDPIHIDDPRFPTNNVGRNC--FRIHQCIKAFSDAYSILESELTSLT 1562 (1588)
Q Consensus 1485 dFLkFYGneFDY~k~vISIr~gGiy~KKerG~s~~pL~IEDPlDpsNNIGRss--frI~qIqkaFarAyeiLs~eL~~~a 1562 (1588)
+||+||+ .|||.+.+||| ..|+++++ .....++..+++|.-+|..+.++..
T Consensus 391 gFF~yYa-~FDf~~~vIsI--------------------------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~~~~~~ 443 (464)
T 3pq1_A 391 EFFEYFG-NFAXXXXXXXX--------------------------XXXXXXXVSQSQLQKFVDLARESAWILQQEDTDRP 443 (464)
T ss_dssp HHHHHGG-GCCCCCCCCCC--------------------------C-------CHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHH-HCCCCCCCCCC--------------------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999998-48874333211--------------------------21112444899999999999999999740123576
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999889999899842324564
Q 000387 1563 PADDQCSRPPYRLLPKIIPSI 1583 (1588)
Q Consensus 1563 s~~~~c~~~~~~Ll~~iips~ 1583 (1588)
. ..+..+|+|+..+.|+.
T Consensus 444 ~---~~~~~~wgl~~ll~~~~ 461 (464)
T 3pq1_A 444 S---ISSNRPWGLVSLLLPSA 461 (464)
T ss_dssp ---------CCTTGGGCC---
T ss_pred C---CCCCCCCCHHHHHCCCC
T ss_conf 7---77899850588746676
No 8
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=1.00 E-value=1 Score=321.00 Aligned_cols=294 Identities=18% Similarity=0.216 Sum_probs=214.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCC-------------
Q ss_conf 996565898757689873101235799999999999998--22328850289999999999998410-------------
Q 000387 1185 PDVAFPLQPLEVQNCPTRKASLSLMHSLLHEEIDSFCKQ--VAAENTARKPYINWAVKRVTRSLQVL------------- 1249 (1588)
Q Consensus 1185 pd~~~PlqpP~L~~cp~~k~slSlm~s~LheEI~aF~ky--IsPEeeeRK~iIe~VIkRIe~IIQsL------------- 1249 (1588)
+.......+|--..-|+.+ ...++.++..+.+. +.|++++.+ .++.++.+++++++..
T Consensus 16 ~~~~~g~~~pis~~~p~~~------d~~~t~~L~~~l~~~~~~ps~ee~~-~R~~vl~~L~~lv~~wv~~v~~~~~~~~~ 88 (514)
T 1q79_A 16 PQKHYGITSPISLAAPKET------DALLTQKLVETLKPFGVFEEEEELQ-RRILILGKLNNLVKEWIREISESKNLPQS 88 (514)
T ss_dssp ---CCSSSCCSCCCCCCHH------HHHHHHHHHHHHGGGTCSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred CCCCCCCCCCCCCCCCCHH------HHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 6322688888768998978------8875899999999748999989999-99999999999999999988765078611
Q ss_pred ---CCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf ---89981478403445998999970699984899898620001333355421689999999999605874567747704
Q 000387 1250 ---WPRSRTNIFGSNATGLSLPSSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVE 1326 (1588)
Q Consensus 1250 ---fPdAkV~lFGSsaTGLaLPsSDIDLVI~~PpvrnlEPiKeAGiLE~RN~IKetiLq~LAR~LRk~g~vks~sVqvI~ 1326 (1588)
.++++|++|||+++|+++|+||||+++..|...+ ++..+..+...|++...+. +++.|.
T Consensus 89 ~~~~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~----------------~~dff~~l~~~L~~~~~v~--~v~~I~ 150 (514)
T 1q79_A 89 VIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVD----------------RSDFFTSFYDKLKLQEEVK--DLRAVE 150 (514)
T ss_dssp HHTTCBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSC----------------HHHHTTHHHHHHHTCTTEE--EEEEET
T ss_pred HCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCC----------------HHHHHHHHHHHHHCCCCCC--EEEEEC
T ss_conf 1136783599840222588799886448994477678----------------8999999999985286674--699835
Q ss_pred CCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 78831999997367112311002568986432222334677644421113588998777888875347876099998508
Q 000387 1327 NTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKS 1406 (1588)
Q Consensus 1327 nARVPIIKLv~~VP~DLs~~ya~~i~SskE~pV~i~~~~~sp~~sDl~~sees~spkC~~vn~d~~D~~tGIsVDISFnN 1406 (1588)
+|+||||||+. .|+++||+|++
T Consensus 151 ~A~VPIIK~~~----------------------------------------------------------~gi~vDL~f~~ 172 (514)
T 1q79_A 151 EAFVPVIKLCF----------------------------------------------------------DGIEIDILFAR 172 (514)
T ss_dssp TSSSCEEEEEE----------------------------------------------------------TTEEEEEEEEE
T ss_pred CCCCCEEEEEE----------------------------------------------------------CCEEEEEEEEC
T ss_conf 78605799998----------------------------------------------------------98517999703
Q ss_pred C--------------------------CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 9--------------------------97178899999999840997079999999999828998777898525789999
Q 000387 1407 P--------------------------SHTGLQTTDLVKELTEQFPASTPLALVLKQFLADRSLDQSYSGGLSSYCLMLL 1460 (1588)
Q Consensus 1407 p--------------------------sh~GLrSSeLIkeYieqfPrLRPLVLVLK~WLKqRGLNDsysGGLSSYALvLM 1460 (1588)
. +.+|++.+++|.+++..++.+|.++++||+|+++|||++++.||||||+|+||
T Consensus 173 ~~~~~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lL 252 (514)
T 1q79_A 173 LALQTIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAML 252 (514)
T ss_dssp CSCSSBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 77656752246775365406666665430007899999997567477899999999999975887434577638999999
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE--EEECCCCCCCCCCCC--------CCCCEEEECCCCCC
Q ss_conf 99998105768998888499999999998515889999169--963794221136889--------99994983999999
Q 000387 1461 ITRFLQHEHHLGRPINQNYGRLLMDFLYFFGNVFDPRQMRI--SVQGSGVYIKRERGY--------SIDPIHIDDPRFPT 1530 (1588)
Q Consensus 1461 VIaFLQ~~p~LGRPiN~sLGeLLLdFLkFYGneFDY~k~vI--SIr~gGiy~KKerG~--------s~~pL~IEDPlDps 1530 (1588)
|++|||++| +.++|+||..||+|||. |||.+.++ .+..+.. . .+.| ....|+|+||+++.
T Consensus 253 Va~~~Ql~P------~~s~~~LL~~FF~~y~~-~dw~~pV~l~~~~~~~l-~--~~~w~p~~~~~dr~~~m~IidP~~P~ 322 (514)
T 1q79_A 253 VARTCQLYP------NAIASTLVHKFFLVFSK-WEWPNPVLLKQPEECNL-N--LPVWDPRVNPSDRYHLMPIITPAYPQ 322 (514)
T ss_dssp HHHHHHHST------TCCHHHHHHHHHHHHHS-CCTTSCBCSSCCCCCSS-C--CCCCCTTTCGGGGGCSSCBBCSSSSC
T ss_pred HHHHHHHCC------CCCHHHHHHHHHHHHHC-CCCCCCEEECCCCCCCC-C--CCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 999997078------99889999999999843-89999757314677887-7--76557766876766622386889877
Q ss_pred CCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 96554721--29999999999999999976302999988999989984232
Q 000387 1531 NNVGRNCF--RIHQCIKAFSDAYSILESELTSLTPADDQCSRPPYRLLPKI 1579 (1588)
Q Consensus 1531 NNIGRssf--rI~qIqkaFarAyeiLs~eL~~~as~~~~c~~~~~~Ll~~i 1579 (1588)
+|++++.. .+..|+.+|++|+++|.+.+.. ..+|..||++.
T Consensus 323 ~N~~~nVs~st~~~I~~Ef~rA~~il~~i~~~--------~~~w~~Lf~~~ 365 (514)
T 1q79_A 323 QNSTYNVSVSTRMVMVEEFKQGLAITDEILLS--------KAEWSKLFEAP 365 (514)
T ss_dssp CBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTT--------SSCHHHHTCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--------CCCHHHHHCCC
T ss_conf 76666579889999999999999999987528--------99889982776
No 9
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=1.00 E-value=1 Score=320.40 Aligned_cols=297 Identities=16% Similarity=0.201 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCC----------C-------CCCEEEECCCCCCCCCCCCCC
Q ss_conf 999999999998--223288502899999999999984108----------9-------981478403445998999970
Q 000387 1212 LLHEEIDSFCKQ--VAAENTARKPYINWAVKRVTRSLQVLW----------P-------RSRTNIFGSNATGLSLPSSDV 1272 (1588)
Q Consensus 1212 ~LheEI~aF~ky--IsPEeeeRK~iIe~VIkRIe~IIQsLf----------P-------dAkV~lFGSsaTGLaLPsSDI 1272 (1588)
.++.++..+.+. +.|+.++.+ .++.++.+++++++. | | +++|++|||+++|+++|+|||
T Consensus 24 ~~~~~L~~~l~~~~~~ps~ee~~-~R~~vl~~L~~lv~~-w~~~v~~~~~~~~~~~~~~~~~V~~FGSy~lG~~~p~SDI 101 (530)
T 2hhp_A 24 KLNDSLIQELKKEGSFETEQETA-NRVQVLKILQELAQR-FVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDI 101 (530)
T ss_dssp HHHHHHHHHHHHTTCSCCHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHTTCCHHHHHHTBCEEEEEHHHHHTCCCTTCCE
T ss_pred HHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCE
T ss_conf 53699999999828999989999-999999999999999-9998877507872220356835999431035888999864
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEE-CCCCHHHHHHCCCC
Q ss_conf 69998489989862000133335542168999999999960587456774770478831999997-36711231100256
Q 000387 1273 DLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVV-EVPHDLIASAASSV 1351 (1588)
Q Consensus 1273 DLVI~~PpvrnlEPiKeAGiLE~RN~IKetiLq~LAR~LRk~g~vks~sVqvI~nARVPIIKLv~-~VP~DLs~~ya~~i 1351 (1588)
|+++..|.... ++..+..++..|++.+.+. +++.|.+|+||||||+. ++.+|++++..+.
T Consensus 102 D~~v~~p~~~~----------------~~dff~~l~~~L~~~~~v~--~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~- 162 (530)
T 2hhp_A 102 DTLVVVPKHVT----------------REDFFTVFDSLLRERKELD--EIAPVPDAFVPIIKIKFSGISIDLICARLDQ- 162 (530)
T ss_dssp EEEEEECTTCC----------------HHHHHHHHHHHHHTCTTEE--EEEEETTSSSCEEEEEETTEEEEEEEEECSS-
T ss_pred EEEEECCCCCC----------------HHHHHHHHHHHHHCCCCCC--EEEEECCCCCCEEEEEECCEEEEEEEECCCC-
T ss_conf 58994377688----------------8999999999985487772--6999558860479999899726899831565-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 89864322223346776444211135889987778888753478760999985089971788999999998409970799
Q 000387 1352 QSPKEDAAHTTLKHDNHVHSDMVALDDSASPKCSHTSSDNIKAATSVRLDISFKSPSHTGLQTTDLVKELTEQFPASTPL 1431 (1588)
Q Consensus 1352 ~SskE~pV~i~~~~~sp~~sDl~~sees~spkC~~vn~d~~D~~tGIsVDISFnNpsh~GLrSSeLIkeYieqfPrLRPL 1431 (1588)
. +.|..+.+..+ ....++. ..+..+ .+|++.+++|.+++..++.+|.+
T Consensus 163 ~---------------------------~ip~~l~l~~~--~~L~~ld-~~~~~s--lng~r~~d~I~~~vp~~~~fr~l 210 (530)
T 2hhp_A 163 P---------------------------QVPLSLTLSDK--NLLRNLD-EKDLRA--LNGTRVTDEILELVPKPNVFRIA 210 (530)
T ss_dssp S---------------------------CBCTTCCSCCG--GGGTTCC-HHHHHH--HHHHHHHHHHHHHSSCHHHHHHH
T ss_pred C---------------------------CCCCCCCCCCH--HHHHCCC-HHHHHC--CCHHHHHHHHHHHCCCCHHHHHH
T ss_conf 5---------------------------67733478853--5542566-555320--10078999999975673778999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECC--CCC
Q ss_conf 999999998289987778985257899999999810576899888849999999999851588999916996379--422
Q 000387 1432 ALVLKQFLADRSLDQSYSGGLSSYCLMLLITRFLQHEHHLGRPINQNYGRLLMDFLYFFGNVFDPRQMRISVQGS--GVY 1509 (1588)
Q Consensus 1432 VLVLK~WLKqRGLNDsysGGLSSYALvLMVIaFLQ~~p~LGRPiN~sLGeLLLdFLkFYGneFDY~k~vISIr~g--Giy 1509 (1588)
+++||+|+++|+||+++.||||||+|+|||++|||++| +.++++||..||+|||. |||.+ .|.+... |.+
T Consensus 211 l~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~P------~~s~~~LL~~FF~~y~~-~dw~~-pV~l~~~~~g~~ 282 (530)
T 2hhp_A 211 LRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYP------NACSAVILNRFFIILSE-WNWPQ-PVILKPIEDGPL 282 (530)
T ss_dssp HHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHST------TCCHHHHHHHHHHHHHH-CCTTS-CEESSCCCCCSS
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHC-CCCCC-CEEECCCCCCCC
T ss_conf 99999999975887434367748999999999982378------99989999999999831-89999-647403677875
Q ss_pred CCCCCCCC--------CCCEEEECCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 11368899--------999498399999996554721--29999999999999999976302999988999989984232
Q 000387 1510 IKRERGYS--------IDPIHIDDPRFPTNNVGRNCF--RIHQCIKAFSDAYSILESELTSLTPADDQCSRPPYRLLPKI 1579 (1588)
Q Consensus 1510 ~KKerG~s--------~~pL~IEDPlDpsNNIGRssf--rI~qIqkaFarAyeiLs~eL~~~as~~~~c~~~~~~Ll~~i 1579 (1588)
. .+.|. ...|+|+||+++.+|++++.. .+..|+.+|++|+++|.+.+.. ...|-.||++.
T Consensus 283 ~--~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~ll~~i~~~--------~~~w~~Lf~~~ 352 (530)
T 2hhp_A 283 Q--VRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSN--------KKSWANLFEKN 352 (530)
T ss_dssp C--SCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTT--------SSCHHHHTCCC
T ss_pred C--CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--------CCCHHHHCCCC
T ss_conf 6--5555765577777664358788997775676489889999999999999999987537--------99879974888
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=1.00 E-value=1 Score=95.56 Aligned_cols=236 Identities=17% Similarity=0.186 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC-CCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 99999999982232885028999999999999841089981478403445998999-97069998489989862000133
Q 000387 1214 HEEIDSFCKQVAAENTARKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPS-SDVDLVVCLPPVRNLEPIKEAGI 1292 (1588)
Q Consensus 1214 heEI~aF~kyIsPEeeeRK~iIe~VIkRIe~IIQsLfPdAkV~lFGSsaTGLaLPs-SDIDLVI~~PpvrnlEPiKeAGi 1292 (1588)
.+-+..|...+.|+..+++. +..+.+.|...|+. ++ +++.+.||++-|.+|++ |||||.+.++....
T Consensus 4 ~~~~~~~l~~i~P~~~E~~~-~~~~~~~I~~~L~~-~~-~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~--------- 71 (437)
T 1r89_A 4 EEILEKALELVIPDEEEVRK-GREAEEELRRRLDE-LG-VEYVFVGSYARNTWLKGSLEIDVFLLFPEEFS--------- 71 (437)
T ss_dssp HHHHHHHHHHHSCCHHHHHH-HHHHHHHHHHHHHH-HT-CCEEEEHHHHHTCCCTTCCEEEEEEEECTTSC---------
T ss_pred HHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHH-CC-CEEEEECCCCCCCCCCCCCCCEEEEECCCCCC---------
T ss_conf 99999999761979899999-99999999999983-78-70898134358973799987029999389988---------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33554216899999999996058745677477047883199999736711231100256898643222233467764442
Q 000387 1293 LEGRNGIKETCLQHAARYLANQEWVKSDSLKTVENTAIPIIMLVVEVPHDLIASAASSVQSPKEDAAHTTLKHDNHVHSD 1372 (1588)
Q Consensus 1293 LE~RN~IKetiLq~LAR~LRk~g~vks~sVqvI~nARVPIIKLv~~VP~DLs~~ya~~i~SskE~pV~i~~~~~sp~~sD 1372 (1588)
++.++..-+..+..++.+ .+ +..|.-|=|....
T Consensus 72 ---~e~l~~~~l~~~~e~l~~--------~~-~~ya~hpyV~~~f----------------------------------- 104 (437)
T 1r89_A 72 ---KEELRERGLEIGKAVLDS--------YE-IRYAEHPYVHGVV----------------------------------- 104 (437)
T ss_dssp ---HHHHHHHHHHHHHHHSSS--------EE-EEESSSEEEEEEE-----------------------------------
T ss_pred ---HHHHHHHHHHHHHHHHHH--------HH-HHCCCCCEEEEEE-----------------------------------
T ss_conf ---899988789999999987--------64-0006886699986-----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE--EEC----CCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCC
Q ss_conf 1113588998777888875347876099998--508----997178899999999840997-079999999999828998
Q 000387 1373 MVALDDSASPKCSHTSSDNIKAATSVRLDIS--FKS----PSHTGLQTTDLVKELTEQFPA-STPLALVLKQFLADRSLD 1445 (1588)
Q Consensus 1373 l~~sees~spkC~~vn~d~~D~~tGIsVDIS--FnN----psh~GLrSSeLIkeYieqfPr-LRPLVLVLK~WLKqRGLN 1445 (1588)
.|+.+||- +.- ....++.-|.+-..|+.+... ++.++.+||+|++..++.
T Consensus 105 -----------------------~g~~vDVVP~y~v~~g~~~~tavDrtp~H~~fv~~r~~~~~~~VRLLK~f~k~~~~y 161 (437)
T 1r89_A 105 -----------------------KGVEVDVVPCYKLKEPKNIKSAVDRTPFHHKWLEGRIKGKENEVRLLKGFLKANGIY 161 (437)
T ss_dssp -----------------------TTEEEEEEEEECCSSSSCCCSHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHTTCB
T ss_pred -----------------------CCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf -----------------------665899997787568766655235868999999860143245879999999857967
Q ss_pred CC--CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEE
Q ss_conf 77--7898525789999999981057689988884999999999985158899991699637942211368899999498
Q 000387 1446 QS--YSGGLSSYCLMLLITRFLQHEHHLGRPINQNYGRLLMDFLYFFGNVFDPRQMRISVQGSGVYIKRERGYSIDPIHI 1523 (1588)
Q Consensus 1446 Ds--ysGGLSSYALvLMVIaFLQ~~p~LGRPiN~sLGeLLLdFLkFYGneFDY~k~vISIr~gGiy~KKerG~s~~pL~I 1523 (1588)
++ ..+|++||.+=||+++| | + +.++++... .|-. ...|.+. +... .+ ..||.|
T Consensus 162 gse~k~~gfSsYllELLv~~y-------G-----~----f~~vl~~~~-~w~~-~~~Id~~----~~~~--~~-~~PlvV 216 (437)
T 1r89_A 162 GAEYKVRGFSGYLCELLIVFY-------G-----S----FLETVKNAR-RWTR-RTVIDVA----KGEV--RK-GEEFFV 216 (437)
T ss_dssp CCSTTTCCBCHHHHHHHHHHH-------S-----S----HHHHHHHHT-TCCT-TEEEEGG----GTEE--EE-CSSCEE
T ss_pred CCCCCCCCCCHHHHHHHHHHH-------C-----C----HHHHHHHHH-HHCC-CEEEECC----CCCC--CC-CCCEEE
T ss_conf 875527889889999999998-------6-----7----799999999-7079-7189517----7753--57-899798
Q ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3999999965547212999999999999999997
Q 000387 1524 DDPRFPTNNVGRNCFRIHQCIKAFSDAYSILESE 1557 (1588)
Q Consensus 1524 EDPlDpsNNIGRssfrI~qIqkaFarAyeiLs~e 1557 (1588)
.||.|++||+++.... ......-..|...|.+-
T Consensus 217 iDPvDp~rNVAa~~s~-~~~~~~~~~a~~~l~~p 249 (437)
T 1r89_A 217 VDPVDEKRNVAANLSL-DNLARFVHLCREFMEAP 249 (437)
T ss_dssp EETTEEEEETTTTCCH-HHHHHHHHHHHHHHHSC
T ss_pred ECCCCCCCCHHHCCCH-HHHHHHHHHHHHHHHCC
T ss_conf 7998998742000789-99999999999999676
Done!