Query 000388
Match_columns 1587
No_of_seqs 292 out of 1134
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 16:01:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000388.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_168-172//hhsearch_pdb/000388hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kwj_A Zinc finger protein DPF 1.0 1 1 162.7 2.5 105 248-366 1-108 (114)
2 3v43_A Histone acetyltransfera 1.0 1 1 160.5 2.4 106 245-365 2-111 (112)
3 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 142.7 5.7 101 245-368 4-106 (111)
4 2e6r_A Jumonji/ARID domain-con 1.0 1 1 126.7 4.4 76 314-394 15-90 (92)
5 3ask_A E3 ubiquitin-protein li 1.0 1 1 110.1 5.7 50 314-365 174-224 (226)
6 3u5n_A E3 ubiquitin-protein li 1.0 1 1 104.8 3.8 51 314-368 6-56 (207)
7 2e6s_A E3 ubiquitin-protein li 1.0 1 1 104.1 4.6 56 297-365 20-76 (77)
8 3shb_A E3 ubiquitin-protein li 1.0 1 1 102.2 3.6 56 297-365 20-76 (77)
9 1wev_A Riken cDNA 1110020M19; 1.0 1 1 102.2 2.5 53 314-367 15-73 (88)
10 3asl_A E3 ubiquitin-protein li 1.0 1 1 101.8 3.8 57 296-365 11-68 (70)
No 1
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=162.66 Aligned_cols=105 Identities=22% Similarity=0.519 Sum_probs=91.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1111101235113368999999983006899--99877876785899-64689987899899772012132112000134
Q 000388 248 DVLTKVHQKSEAETDRDNGEPPDEALKCLDK--DKEELTSTQLAELP-DVQRFPAASGDETDESDIMEQDVKVCDICGDA 324 (1587)
Q Consensus 248 ~~~C~iC~~tee~nk~~~~gqpEELL~CssC--s~HpSCLd~s~e~s-~vkky~WQ~~Dd~dedDci~~DCkvC~VCg~~ 324 (1587)
+.+|.+|++++..|++ .|++++||.|..| .||++|+++..++. .++.+.|+ |. +|+.|.+|+..
T Consensus 1 ~~~C~~C~~~~~~n~k--~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~---------C~--~C~~C~~C~~~ 67 (114)
T 2kwj_A 1 GSYCDFCLGGSNMNKK--SGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQ---------CI--ECKSCILCGTS 67 (114)
T ss_dssp CCCCSSSCCBTTBCTT--TCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCC---------CG--GGCCCTTTTCC
T ss_pred CCCCCCCCCCCCCCCC--CCCCCCCEEECCCCCCCCHHHCCCHHHHHHCCCCCCCC---------CC--CCCCCCCCCCC
T ss_conf 9808658897534446--79999986929899832321387846643116877517---------56--62733756346
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 679880771889999887666573359999997438547641
Q 000388 325 GREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFA 366 (1587)
Q Consensus 325 gdEd~LLlCD~CDrGaYHlyCL~PPL~eVPeGdW~Cp~C~~~ 366 (1587)
++++.||+||.|+++ ||++||+|||..+|+|+|+|+.|...
T Consensus 68 ~~~~~ll~Cd~C~~~-yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 68 ENDDQLLFCDDCDRG-YHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp TTTTTEEECSSSCCE-EETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCEEECCCCCCC-CCCCCCCCCCCCCCCCCEECCCCCCH
T ss_conf 888745774898941-02504598746788978199241034
No 2
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=160.51 Aligned_cols=106 Identities=23% Similarity=0.513 Sum_probs=91.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3221111101235113368999999983006899--99877876785899-64689987899899772012132112000
Q 000388 245 SSSDVLTKVHQKSEAETDRDNGEPPDEALKCLDK--DKEELTSTQLAELP-DVQRFPAASGDETDESDIMEQDVKVCDIC 321 (1587)
Q Consensus 245 ~Ts~~~C~iC~~tee~nk~~~~gqpEELL~CssC--s~HpSCLd~s~e~s-~vkky~WQ~~Dd~dedDci~~DCkvC~VC 321 (1587)
.+++.+|.+|+++++.|+ .+.+++||.|..| .||++|+++..++. .+..+.|+ |. +|++|.+|
T Consensus 2 v~p~~~C~~C~~~~~~~~---~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~---------C~--~C~~C~vC 67 (112)
T 3v43_A 2 MEPIPICSFCLGTKEQNR---EKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQ---------CI--ECKTCSSC 67 (112)
T ss_dssp CCCCSSBTTTCCCTTCCT---TSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCC---------CT--TTCCBTTT
T ss_pred CCCCCCCCCCCCCHHHCC---CCCCHHCEEHHHCCCCCCCCHHCCCHHHHHHHHCCCCC---------CC--CCCCCCCC
T ss_conf 866761310389334276---89911163753449988970353888999875424653---------01--17754466
Q ss_pred CCCC-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1346-7988077188999988766657335999999743854764
Q 000388 322 GDAG-REDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKF 365 (1587)
Q Consensus 322 g~~g-dEd~LLlCD~CDrGaYHlyCL~PPL~eVPeGdW~Cp~C~~ 365 (1587)
+..+ +++.||+||.|+++ ||++||.|||.++|+|+|+|+.|..
T Consensus 68 ~~~~~~~~~ll~Cd~C~~~-yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 68 RDQGKNADNMLFCDSCDRG-FHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCCCCTTCCCEECTTTCCE-ECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCEEECCCCCCE-EECCCCCCCCCCCCCCCEECCCCCC
T ss_conf 6868885656874899891-5663589998989998857978789
No 3
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=142.74 Aligned_cols=101 Identities=21% Similarity=0.509 Sum_probs=85.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3221111101235113368999999983006899--99877876785899646899878998997720121321120001
Q 000388 245 SSSDVLTKVHQKSEAETDRDNGEPPDEALKCLDK--DKEELTSTQLAELPDVQRFPAASGDETDESDIMEQDVKVCDICG 322 (1587)
Q Consensus 245 ~Ts~~~C~iC~~tee~nk~~~~gqpEELL~CssC--s~HpSCLd~s~e~s~vkky~WQ~~Dd~dedDci~~DCkvC~VCg 322 (1587)
+.....|.+|..+ |+.++||.|..| .||..|+++... .+..+.|+ |. +|.+|.+|+
T Consensus 4 ~~~~~~C~~C~~~---------g~~~~ll~C~~C~~~~H~~Cl~~~~~--~~~~~~W~---------C~--~C~~C~~C~ 61 (111)
T 2ysm_A 4 GSSGANCAVCDSP---------GDLLDQFFCTTCGQHYHGMCLDIAVT--PLKRAGWQ---------CP--ECKVCQNCK 61 (111)
T ss_dssp CCCCSCBTTTCCC---------CCTTTSEECSSSCCEECTTTTTCCCC--TTTSTTCC---------CT--TTCCCTTTC
T ss_pred CCCCCCCCCCCCC---------CCCCCCEECCCCCCCCCHHHHCCCCC--CCCCCCCC---------CC--CCCCCCCCC
T ss_conf 8997999578998---------88758859999997739677088655--44566865---------87--678262347
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3467988077188999988766657335999999743854764100
Q 000388 323 DAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFAEE 368 (1587)
Q Consensus 323 ~~gdEd~LLlCD~CDrGaYHlyCL~PPL~eVPeGdW~Cp~C~~~~e 368 (1587)
..++++.||+||.|+++ ||++||.|||..+|+|+|+|+.|..+..
T Consensus 62 ~~~~~~~ll~Cd~C~~~-yH~~Cl~ppl~~~P~g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 62 QSGEDSKMLVCDTCDKG-YHTFCLQPVMKSVPTNGWKCKNCRICIS 106 (111)
T ss_dssp CCSCCTTEEECSSSCCE-EEGGGSSSCCSSCCSSCCCCHHHHCCSC
T ss_pred CCCCCCCEEECCCCCCH-HHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 65898776589999808-8698658765668898829928827287
No 4
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=126.68 Aligned_cols=76 Identities=26% Similarity=0.670 Sum_probs=66.6
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32112000134679880771889999887666573359999997438547641000001589873344456677666776
Q 000388 314 DVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFAEETEKQKQGSDIEGKRTNKQSTSTQSS 393 (1587)
Q Consensus 314 DCkvC~VCg~~gdEd~LLlCD~CDrGaYHlyCL~PPL~eVPeGdW~Cp~C~~~~ec~kk~~~~~~e~a~~~~~sst~Qss 393 (1587)
++..|.+|+..++++.||+||.|+++ ||++||.|||..+|+|+|+|+.|.. .++.++...++|++. .+.|+++.|
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~-~H~~Cl~Ppl~~~P~g~W~C~~C~~-~~~~~~~~~~Gf~~~---~~~y~l~~~ 89 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDN-YHIFCLLPPLPEIPRGIWRCPKCIL-AECKQPPEAFGFEQA---TQEYSLSGP 89 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCE-ECSSSSSSCCSSCCSSCCCCHHHHH-HHHSCCSSCCSCCCC---CCCCCCSCC
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCH-HCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHC---CCCEEECCC
T ss_conf 88988368996998778881799843-3453479884658898749804728-304598554385452---772541366
Q ss_pred C
Q ss_conf 6
Q 000388 394 G 394 (1587)
Q Consensus 394 G 394 (1587)
+
T Consensus 90 ~ 90 (92)
T 2e6r_A 90 S 90 (92)
T ss_dssp S
T ss_pred C
T ss_conf 7
No 5
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=110.08 Aligned_cols=50 Identities=32% Similarity=0.869 Sum_probs=46.6
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 3211200013467988077188999988766657335999999-743854764
Q 000388 314 DVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEG-DWLCEECKF 365 (1587)
Q Consensus 314 DCkvC~VCg~~gdEd~LLlCD~CDrGaYHlyCL~PPL~eVPeG-dW~Cp~C~~ 365 (1587)
+| .|.+|+..++++.||+||.|+++ ||++||+|||..+|+| +|+|+.|..
T Consensus 174 ~c-~C~vC~~~~~~~~lL~CD~C~~~-yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VC-ACHLCGGRQDPDKQLMCDECDMA-FHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TT-SCSSSCCCCC--CCEECSSSCCE-ECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CC-CCCCCCCCCCCCCEEECCCCCCC-EECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88-88688997999876883899941-00756788745698998878938749
No 6
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=104.76 Aligned_cols=51 Identities=29% Similarity=0.778 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3211200013467988077188999988766657335999999743854764100
Q 000388 314 DVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFAEE 368 (1587)
Q Consensus 314 DCkvC~VCg~~gdEd~LLlCD~CDrGaYHlyCL~PPL~eVPeGdW~Cp~C~~~~e 368 (1587)
....|.+|+++|+ ||+||+|+++ ||++|+.|||..+|+|+|+|+.|.....
T Consensus 6 ~~~~C~~C~~~g~---ll~Cd~C~~~-~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGGD---LLCCEKCPKV-FHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCEE---EEECSSSSCE-ECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCC---EEECCCCCCC-CCCCCCCCCCCCCCCCCEEECCEECCCC
T ss_conf 8898988899993---6776999984-3871589998888998878684268664
No 7
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=104.06 Aligned_cols=56 Identities=30% Similarity=0.772 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 998789989977201213211200013467988077188999988766657335999999-743854764
Q 000388 297 FPAASGDETDESDIMEQDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEG-DWLCEECKF 365 (1587)
Q Consensus 297 y~WQ~~Dd~dedDci~~DCkvC~VCg~~gdEd~LLlCD~CDrGaYHlyCL~PPL~eVPeG-dW~Cp~C~~ 365 (1587)
+.|+ |. +| .|.+|+..++++.||+||.|+++ ||++||+|||..+|+| +|+|+.|..
T Consensus 20 ~~w~---------C~--~c-~C~vC~~~~~~~~ll~CD~C~~~-yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 20 PEKK---------CH--SC-SCRVCGGKHEPNMQLLCDECNVA-YHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSC---------CS--SS-SCSSSCCCCCSTTEEECSSSCCE-EETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCEE---------CC--CC-CCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7868---------98--88-88276996999987884899960-00635688746788798738918218
No 8
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=102.23 Aligned_cols=56 Identities=30% Similarity=0.756 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 9987899899772012132112000134679880771889999887666573359999997-43854764
Q 000388 297 FPAASGDETDESDIMEQDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGD-WLCEECKF 365 (1587)
Q Consensus 297 y~WQ~~Dd~dedDci~~DCkvC~VCg~~gdEd~LLlCD~CDrGaYHlyCL~PPL~eVPeGd-W~Cp~C~~ 365 (1587)
..|+ |. +| .|.+|+..++++.||+||.|+++ ||++||+|||..+|+|+ |+|+.|..
T Consensus 20 ~~W~---------C~--~C-~C~vC~~~~d~~~ll~CD~C~~~-yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 20 VNRL---------CR--VC-ACHLCGGRQDPDKQLMCDECDMA-FHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTSC---------CT--TT-SBTTTCCCSCGGGEEECTTTCCE-EETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCC---------CC--CC-CCCCCCCCCCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 8879---------99--88-27816997898610680789980-17514797524788999419947165
No 9
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=102.22 Aligned_cols=53 Identities=23% Similarity=0.493 Sum_probs=46.3
Q ss_pred CCCCCCCCCCCCC--CCCEEEECCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCC
Q ss_conf 3211200013467--98807718899998876665733599----999974385476410
Q 000388 314 DVKVCDICGDAGR--EDLLAICSRCSDGAEHTYCMKEMLQK----VPEGDWLCEECKFAE 367 (1587)
Q Consensus 314 DCkvC~VCg~~gd--Ed~LLlCD~CDrGaYHlyCL~PPL~e----VPeGdW~Cp~C~~~~ 367 (1587)
+..+|.+|+..+. ++.||+||.|+++ ||++||.|||.. +|+|+|+|+.|....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~-yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNL-YHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCE-EETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCE-ECCCCCCCCCCCCCCCCCCCCEECCCCCCHH
T ss_conf 9795878899888899826777999895-8675488865444467889885686640646
No 10
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=1.00 E-value=1 Score=101.83 Aligned_cols=57 Identities=28% Similarity=0.729 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 8998789989977201213211200013467988077188999988766657335999999-743854764
Q 000388 296 RFPAASGDETDESDIMEQDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEG-DWLCEECKF 365 (1587)
Q Consensus 296 ky~WQ~~Dd~dedDci~~DCkvC~VCg~~gdEd~LLlCD~CDrGaYHlyCL~PPL~eVPeG-dW~Cp~C~~ 365 (1587)
.+.|+ |. +| .|.+|+..++++.||+||.|+++ ||++||+|||..+|+| +|+|+.|..
T Consensus 11 ~~~w~---------C~--~C-~C~~C~~~~~~~~ll~CD~C~~~-yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 11 DVNRL---------CR--VC-ACHLCGGRQDPDKQLMCDECDMA-FHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp CTTSC---------CT--TT-SBTTTCCCSCGGGEEECTTTCCE-EEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCEE---------CC--CC-CCCCCCCCCCCCCEEECCCCCCC-EECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98839---------98--88-98577995999877885899974-61545798757787798857928638
Done!