Query 000389
Match_columns 1585
No_of_seqs 214 out of 374
Neff 4.6
Searched_HMMs 13730
Date Tue Mar 26 16:48:58 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000389.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_168-172//hhsearch_scop/000389hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 5.4 64 0.0047 6.2 2.0 34 1084-1117 93-129 (328)
2 d1wixa_ a.40.3.1 (A:) Hook hom 4.3 86 0.0063 5.3 1.1 50 894-955 35-85 (164)
3 d1dfma_ c.52.1.5 (A:) Restrict 3.7 1E+02 0.0073 4.8 3.3 53 1086-1143 120-172 (223)
4 d1t4wa_ b.2.5.2 (A:) Transcrip 2.4 1.8E+02 0.013 3.0 0.7 12 906-917 180-192 (196)
5 d1x68a1 g.39.1.3 (A:8-36) Four 2.2 1.9E+02 0.014 2.7 0.7 8 1394-1401 11-18 (29)
6 d1x99a_ b.97.1.2 (A:) Lectin x 2.1 60 0.0043 6.5 -2.7 6 98-103 75-80 (145)
7 d1sq5a_ c.37.1.6 (A:) Pantothe 2.0 2.1E+02 0.015 2.4 5.1 57 1112-1187 57-113 (308)
8 d1t8ha_ d.194.1.2 (A:) Hypothe 2.0 2.1E+02 0.016 2.4 1.8 30 1185-1223 2-49 (272)
9 d1kl9a1 a.60.14.1 (A:89-182) E 2.0 1.4E+02 0.0099 3.8 -1.0 28 1170-1212 43-83 (94)
10 d1jaea1 b.71.1.1 (A:379-471) A 2.0 1.9E+02 0.014 2.7 -0.3 13 1088-1100 9-21 (93)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.39 E-value=64 Score=6.24 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=24.1
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCC---CCCHHHHHH
Q ss_conf 8977563212322023220002477---512079985
Q 000389 1084 EGKPENQNHAIIFTRGEALQTIDMN---QDNYFEEAF 1117 (1585)
Q Consensus 1084 eGKpeNQNhAiiFtRGe~lQtIDmN---QDnYlEE~l 1117 (1585)
-|.+...|.++--++||++-.+|.- ..++||+.+
T Consensus 93 ~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~ 129 (328)
T d1xhba2 93 SGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 129 (328)
T ss_dssp CCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHH
T ss_conf 3216887899986311002201765566736999999
No 2
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.26 E-value=86 Score=5.30 Aligned_cols=50 Identities=24% Similarity=0.454 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHCCHHHH-HHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf 962089999862971234-47865089967878873124442010035431000111110379
Q 000389 894 DGITTLFYLQKIYPDEWT-NFQKRINDPKLNYSEDDKNEATRRWVSYRAQTLSRTVRGMMYYK 955 (1585)
Q Consensus 894 dgvsiL~YLq~i~PdEW~-NFleR~k~e~~~~~~~~~~~elr~WAS~RgQtL~RTV~Gmm~Y~ 955 (1585)
||+-+-+-|.+|-|+-.. ..++|++.+. ...|+ .|-|.|-+-+|+|..|.
T Consensus 35 DGv~l~~iL~qIdP~~f~~~~~~~~~~d~-----------~~nw~-lr~~NLk~i~~~i~~Yy 85 (164)
T d1wixa_ 35 NGVTMAQVLHQIDVAWFSESWLSRIKDDV-----------GDNWR-IKASNLKKVLHGITSYY 85 (164)
T ss_dssp TSHHHHHHHHHHCTTTSCHHHHTTCCSGG-----------GGCSH-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCHHHHCCCCCC-----------CCCHH-HHHHHHHHHHHHHHHHH
T ss_conf 36999999998496535715652366665-----------53399-99978999999999999
No 3
>d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]}
Probab=3.74 E-value=1e+02 Score=4.79 Aligned_cols=53 Identities=30% Similarity=0.323 Sum_probs=31.9
Q ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCC
Q ss_conf 7756321232202322000247751207998512104898601999999961840333
Q 000389 1086 KPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKMRNVLEEFLKSPSGRREPTILGLRE 1143 (1585)
Q Consensus 1086 KpeNQNhAiiFtRGe~lQtIDmNQDnYlEE~lKmrnlL~Ef~~~~~g~~~~~IlG~RE 1143 (1585)
+.++-+-+||-|.| .+-+-.|-|+|+|.+.--=+-|.+..-.+ -|++|||.-|
T Consensus 120 ~~~~t~~~Ii~tk~--~~~~asn~~~y~e~~~~~L~~l~~~~v~d---vPi~~~gi~e 172 (223)
T d1dfma_ 120 DEEGMKVAIIITKG--HMFPASNSSLYYEQAQNQLNSLAEYNVFD---VPIRLVGLIE 172 (223)
T ss_dssp SSSBCCEEEEEEEC--TTSCCSTTBCCHHHHHHHHHHHHHTTCCC---SCEEEEEEEC
T ss_pred CCCCCCEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCC---CCEEEEEECC
T ss_conf 02466569999624--34203461479999999998627363234---5555566057
No 4
>d1t4wa_ b.2.5.2 (A:) Transcription factor CEP-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=2.36 E-value=1.8e+02 Score=3.00 Aligned_cols=12 Identities=50% Similarity=1.212 Sum_probs=7.8
Q ss_pred CC-HHHHHHHHHH
Q ss_conf 97-1234478650
Q 000389 906 YP-DEWTNFQKRI 917 (1585)
Q Consensus 906 ~P-dEW~NFleR~ 917 (1585)
|| .+|+||-||-
T Consensus 180 yprrdwknfce~e 192 (196)
T d1t4wa_ 180 YPRRDWKNFCERE 192 (196)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 3413667664443
No 5
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.21 E-value=1.9e+02 Score=2.74 Aligned_cols=8 Identities=25% Similarity=0.463 Sum_probs=0.0
Q ss_pred CCCCEEEE
Q ss_conf 24822210
Q 000389 1394 HGGSKYRA 1401 (1585)
Q Consensus 1394 ~GgAkY~a 1401 (1585)
.||+||++
T Consensus 11 ~gG~k~is 18 (29)
T d1x68a1 11 LTGAKFIC 18 (29)
T ss_dssp TTTCCEEE
T ss_pred CCCCEEEE
T ss_conf 57715887
No 6
>d1x99a_ b.97.1.2 (A:) Lectin xcl {Xerocomus chrysenteron [TaxId: 5386]}
Probab=2.13 E-value=60 Score=6.47 Aligned_cols=6 Identities=67% Similarity=1.863 Sum_probs=0.0
Q ss_pred HHHHHH
Q ss_conf 289997
Q 000389 98 NYWSWC 103 (1585)
Q Consensus 98 NYkkWC 103 (1585)
||++||
T Consensus 75 NYk~Wc 80 (145)
T d1x99a_ 75 NYKRWC 80 (145)
T ss_dssp TTEEEE
T ss_pred CCCCHH
T ss_conf 487330
No 7
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=2.03 E-value=2.1e+02 Score=2.41 Aligned_cols=57 Identities=28% Similarity=0.507 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEECCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 0799851210489860199999996184033301026611010001122136778887631155612332268843
Q 000389 1112 YFEEAFKMRNVLEEFLKSPSGRREPTILGLREHIFTGSVSSLAWFMSNQETSFVTISQRILAYPLRVRFHYGHPDI 1187 (1585)
Q Consensus 1112 YlEE~lKmrnlL~Ef~~~~~g~~~~~IlG~RE~IFt~~vssLa~f~a~qE~sF~Tl~qR~la~Pl~vr~HYGHPD~ 1187 (1585)
|.+++.+.....+.|.... +.+.|-|+| .+|++|| -.+||...-+..|+. .+++|.+
T Consensus 57 ~~~~~~~~~~~~~~fl~~~-~~k~P~iIG-----IaG~sgS-------GKSTla~~L~~lL~~------~~~~~~v 113 (308)
T d1sq5a_ 57 YISSNLRRQAVLEQFLGTN-GQRIPYIIS-----IAGSVAV-------GKSTTARVLQALLSR------WPEHRRV 113 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCEEEE-----EEECTTS-------SHHHHHHHHHHHHTT------STTCCCE
T ss_pred HHHHHHHHHHHHHHHHCCC-CCCCCEEEE-----EECCCCC-------CCCHHHHHHHHHHHH------HCCCCCE
T ss_conf 9999999999999985344-789988999-----9689999-------876899999999730------4689965
No 8
>d1t8ha_ d.194.1.2 (A:) Hypothetical protein YlmD {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.01 E-value=2.1e+02 Score=2.37 Aligned_cols=30 Identities=43% Similarity=0.628 Sum_probs=0.0
Q ss_pred CCCCC------------------CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 84322------------------1011236863322212345065530012223563
Q 000389 1185 PDIFD------------------RIFHITRGGISKASKTINLSEDIFAGMNSTLRGG 1223 (1585)
Q Consensus 1185 PD~fd------------------~~f~~trGGvSKAsk~i~lsEDifaG~n~~lRgG 1223 (1585)
||+|+ .-|.+-.|||||. .|+++|.-..-|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~v~~gfttR~GGvS~~---------p~~slNl~~~vg 49 (272)
T d1t8ha_ 2 PDIFQQEARGWLRCGAPPFAGAVAGLTTKHGGESKG---------PFASLNMGLHVG 49 (272)
T ss_dssp CCSEEECSSSEEEECCGGGTTSEEEEECSCSCCCCG---------GGCSCCCCSSSS
T ss_pred CCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCC---------CCCCCCCCCCCC
T ss_conf 622331146841589988899879986799884789---------777612779999
No 9
>d1kl9a1 a.60.14.1 (A:89-182) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.00 E-value=1.4e+02 Score=3.83 Aligned_cols=28 Identities=29% Similarity=0.558 Sum_probs=0.0
Q ss_pred HHHCCCCCEEE-ECCC------------CCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 63115561233-2268------------8432210112368633222123450655
Q 000389 1170 RILAYPLRVRF-HYGH------------PDIFDRIFHITRGGISKASKTINLSEDI 1212 (1585)
Q Consensus 1170 R~la~Pl~vr~-HYGH------------PD~fd~~f~~trGGvSKAsk~i~lsEDi 1212 (1585)
+..|+||.-|. |+|| |++|| ++.|+|++
T Consensus 43 ~~iaWpl~~ky~~~g~~aydaFK~av~dp~il~---------------~l~l~~~v 83 (94)
T d1kl9a1 43 QRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILD---------------SLDLNEDE 83 (94)
T ss_dssp HHTHHHHHHHHTCTTHHHHHHHHHHHHCGGGGT---------------TSSCCHHH
T ss_pred HHHHCCCHHHHCCCCCCHHHHHHHHHCCCCCCC---------------CCCCCHHH
T ss_conf 885022188747787319999999855800203---------------68999899
No 10
>d1jaea1 b.71.1.1 (A:379-471) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}
Probab=1.96 E-value=1.9e+02 Score=2.70 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=0.0
Q ss_pred CCCCCHHHHCCCC
Q ss_conf 5632123220232
Q 000389 1088 ENQNHAIIFTRGE 1100 (1585)
Q Consensus 1088 eNQNhAiiFtRGe 1100 (1585)
||-|+.|.|.||.
T Consensus 9 dng~nqIAF~RG~ 21 (93)
T d1jaea1 9 SNDDNQIAFSRGS 21 (93)
T ss_dssp ECSSSEEEEEETT
T ss_pred ECCCCEEEEECCC
T ss_conf 8999579991599
Done!