BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000390
(1585 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 318 CDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFA 366
C +C G +D L +C C+ A H +C++ L +VP+G+W C C+ A
Sbjct: 3 CKVCRKKGEDDKLILCDECNK-AFHLFCLRPALYEVPDGEWQCPACQPA 50
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 314 DVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFAEETEKQK 373
D +C +C +D L C C D H +C+ L ++P G W C +C AE + +
Sbjct: 15 DSYICQVCSRGDEDDKLLFCDGCDDNY-HIFCLLPPLPEIPRGIWRCPKCILAECKQPPE 73
Query: 374 QDIEGKRTNKQSTSTQSSG 392
+ T + S S SSG
Sbjct: 74 AFGFEQATQEYSLSGPSSG 92
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 314 DVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECKFA 366
+ KVC C +G + + +C C D HT+C++ +++ VP W C+ C+
Sbjct: 53 ECKVCQNCKQSGEDSKMLVCDTC-DKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 39.7 bits (91), Expect = 0.015, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 312 EQDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEEC 363
+ ++ C +C D G L C C + H +C++ L +VP+G+W C C
Sbjct: 6 DHHMEFCRVCKDGGE---LLCCDTCPS-SYHIHCLRPALYEVPDGEWQCPRC 53
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 39.3 bits (90), Expect = 0.018, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 315 VKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVP-EGDWLCEECK 364
V C +CG D +C C D A H YC+ L VP E +W C EC+
Sbjct: 5 VCACHLCGGRQDPDKQLMCDEC-DMAFHIYCLDPPLSSVPSEDEWYCPECR 54
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 39.3 bits (90), Expect = 0.019, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 315 VKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVP-EGDWLCEECK 364
V C +CG D +C C D A H YC+ L VP E +W C EC+
Sbjct: 174 VCACHLCGGRQDPDKQLMCDEC-DMAFHIYCLDPPLSSVPSEDEWYCPECR 223
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 38.9 bits (89), Expect = 0.023, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 312 EQDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEEC 363
+ ++ C +C D G L C C + H +C+ L ++P G+WLC C
Sbjct: 6 DHHMEFCRVCKDGGE---LLCCDTCPS-SYHIHCLNPPLPEIPNGEWLCPRC 53
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 38.5 bits (88), Expect = 0.029, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 315 VKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVP-EGDWLCEECK 364
V C +CG D +C C D A H YC+ L VP E +W C EC+
Sbjct: 23 VCACHLCGGRQDPDKQLMCDEC-DMAFHIYCLDPPLSSVPSEDEWYCPECR 72
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 315 VKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVP-EGDWLCEECK 364
V C +CG D +C C D A H YC+ L VP E +W C EC+
Sbjct: 190 VCACHLCGGRQDPDKQLMCDEC-DMAFHIYCLDPPLSSVPSEDEWYCPECR 239
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 37.7 bits (86), Expect = 0.056, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 304 ETDESDIMEQDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEEC 363
ETD D C++C G L C R A H C+ ++K PEG W C C
Sbjct: 7 ETDHQD-------YCEVCQQGGEIILCDTCPR----AYHMVCLDPDMEKAPEGKWSCPHC 55
Query: 364 K 364
+
Sbjct: 56 E 56
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 314 DVKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEEC 363
+ K C +CG + +D L C C G H YC+ + + PEG W C C
Sbjct: 57 ECKSCILCGTSENDDQLLFCDDCDRGY-HMYCLNPPVAEPPEGSWSCHLC 105
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 35.4 bits (80), Expect = 0.27, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 318 CDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECK 364
C +C +G+ L +C CS H C+ L+ +P+G W+C C+
Sbjct: 8 CSVCRKSGQ---LLMCDTCSR-VYHLDCLDPPLKTIPKGMWICPRCQ 50
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 315 VKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVP-EGDWLCEECK 364
V C +CG D +C C D A H YC+ L VP E +W C EC+
Sbjct: 26 VCACHLCGGRQDPDKQLMCDEC-DMAFHIYCLDPPLSSVPSEDEWYCPECR 75
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 34.3 bits (77), Expect = 0.64, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 310 IMEQDVKVCDIC--GDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEEC 363
++++D VC IC G++ +++ C C + A H C + +PEG WLC C
Sbjct: 12 LIDEDA-VCSICMDGESQNSNVILFCDMC-NLAVHQECYG--VPYIPEGQWLCRHC 63
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 315 VKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVP-EGDWLCEECK 364
V C +CG D +C C D A H YC+ L VP E +W C EC+
Sbjct: 20 VCACHLCGGRQDPDKQLMCDEC-DMAFHIYCLDPPLSSVPSEDEWYCPECR 69
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 33.9 bits (76), Expect = 0.72, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 318 CDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECK 364
C +C +G+ L +C CS H C+ L+ +P+G W+C C+
Sbjct: 12 CSVCRKSGQ---LLMCDTCSR-VYHLDCLDPPLKTIPKGMWICPRCQ 54
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 33.9 bits (76), Expect = 0.77, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 318 CDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECK--FAEETEKQKQD 375
C +C + G DLL C +C H C L P GDW+C C+ E E +
Sbjct: 10 CAVCQNGG--DLLC-CEKCPK-VFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDN 65
Query: 376 IEGKRTNKQSTSTQSSGKRHAENL 399
++ + K + +R E L
Sbjct: 66 LQHSKKGKTAQGLSPVDQRKCERL 89
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 315 VKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVP-EGDWLCEECK 364
V C +CG D +C C D A H YC+ L VP E +W C EC+
Sbjct: 18 VCACHLCGGRQDPDKQLMCDEC-DMAFHIYCLDPPLSSVPSEDEWYCPECR 67
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 315 VKVCDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVP-EGDWLCEECK 364
V C +CG D +C C D A H YC+ L VP E +W C EC+
Sbjct: 18 VCACHLCGGRQDPDKQLMCDEC-DMAFHIYCLDPPLSSVPSEDEWYCPECR 67
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 318 CDICGDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGD-WLCEECK 364
C +CG ++ +C C + A H YC+ L KVPE + W C CK
Sbjct: 29 CRVCGGKHEPNMQLLCDEC-NVAYHIYCLNPPLDKVPEEEYWYCPSCK 75
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 310 IMEQDVKVCDIC--GDAGREDLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEEC 363
++++D VC IC G++ +++ C C + A H C + +PEG WLC C
Sbjct: 21 LIDEDA-VCSICMDGESQNSNVILFCDMC-NLAVHQECYG--VPYIPEGQWLCRHC 72
>pdb|1X1N|A Chain A, Structure Determination And Refinement At 1.8 A Resolution
Of Disproportionating Enzyme From Potato
Length = 524
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 28/168 (16%)
Query: 1155 PVGNEGAHDEGSVDSGKVPGIMKCGRGQ-INLEEDLNEGSFDVEKVPDIMESGRDQINLE 1213
P G G D GS SG+ CG I+LEE +++G +E++P+ + + R
Sbjct: 72 PPGKRGNED-GSPYSGQDA---NCGNTLLISLEELVDDGLLKMEELPEPLPTDR------ 121
Query: 1214 RDLNKGTFDADKIPVITKSGRDQINLERDLNESIVDGKIVPDKIKSGRDQINLERDLNEG 1273
+N T K P+ITK+ + ++ E +L D++++ R N+ L +
Sbjct: 122 --VNYSTISEIKDPLITKAAKRLLSSEGELK----------DQLENFRRDPNISSWLEDA 169
Query: 1274 SVDAKNVMMDIVKRVRARFNLVRDLNDRGVTAEKLPDIVKSDRDQIDL 1321
+ A +D + ++ L +R + A L ++ +S++D ID+
Sbjct: 170 AYFAA---IDNSVNTISWYDWPEPLKNRHLAA--LEEVYQSEKDFIDI 212
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 314 DVKVCDICGDAGRE-DLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECK 364
+ K C C D G+ D + C C G H C L ++P+G W+C+ C+
Sbjct: 58 ECKTCSSCRDQGKNADNMLFCDSCDRGF-HMECCDPPLTRMPKGMWICQICR 108
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 314 DVKVCDICGDAGRE-DLLAICSRCSDGAEHTYCMKEMLQKVPEGDWLCEECK 364
+ K C C D G+ D + C C G H C L ++P+G W+C+ C+
Sbjct: 60 ECKTCSSCRDQGKNADNMLFCDSCDRGF-HMECCDPPLTRMPKGMWICQICR 110
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 317 VCDICGDAGRE--DLLAICSRCSDGAEHTYCMKEMLQKVPEGD--WLCEECKFAEETEK 371
VC IC + E + + IC +C G + V + D WLC +C FA T++
Sbjct: 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKR 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,248,389
Number of Sequences: 62578
Number of extensions: 1832222
Number of successful extensions: 3636
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3618
Number of HSP's gapped (non-prelim): 40
length of query: 1585
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1473
effective length of database: 7,964,601
effective search space: 11731857273
effective search space used: 11731857273
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)