BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000391
(1582 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 27/257 (10%)
Query: 273 LLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGK-SLDLNSYIKVKCIAAGSRN 331
LLK +GK+ ES +++ L+ EA + DGK +DL++ IK + A
Sbjct: 154 LLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKK-DGKYVVDLDN-IKFEKKAGEGVE 211
Query: 332 QSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXXXXXXXXXXXXXX----------FKAMEQ 381
+S++++G+V K H MP +N + +EQ
Sbjct: 212 ESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQ 271
Query: 382 EKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSP 441
E+ LK ++D I NVV V+K + Q + + G+ V +K +E++A+ TG+
Sbjct: 272 EEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAK 331
Query: 442 ILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKG 500
I+++ LT + L + + VEE K + ++F+EGC T+L++G
Sbjct: 332 IVTNVKDLTPEDLGYAE------VVEER-------KLAGENMIFVEGCKNPKAVTILIRG 378
Query: 501 SNSDELKRIKSVVQCAV 517
+ ++ ++ AV
Sbjct: 379 GTEHVIDEVERALEDAV 395
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 27/257 (10%)
Query: 273 LLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGK-SLDLNSYIKVKCIAAGSRN 331
LLK +GK+ ES +++ L+ EA + DGK +DL++ IK + A
Sbjct: 154 LLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKK-DGKYVVDLDN-IKFEKKAGEGVE 211
Query: 332 QSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXXXXXXXXXXXXXX----------FKAMEQ 381
+S++++G+V K H MP +N + +EQ
Sbjct: 212 ESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQ 271
Query: 382 EKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSP 441
E+ LK ++D I NVV V+K + Q + + G+ V +K +E++A+ TG+
Sbjct: 272 EEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAK 331
Query: 442 ILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKG 500
I+++ LT + L + + VEE K + ++F+EGC T+L++G
Sbjct: 332 IVTNVKDLTPEDLGYAE------VVEER-------KLAGENMIFVEGCKNPKAVTILIRG 378
Query: 501 SNSDELKRIKSVVQCAV 517
+ ++ ++ AV
Sbjct: 379 GTEHVIDEVERALEDAV 395
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 27/257 (10%)
Query: 273 LLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGK-SLDLNSYIKVKCIAAGSRN 331
LLK +GK+ ES +++ L+ EA + DGK +DL++ IK + A
Sbjct: 154 LLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKK-DGKYVVDLDN-IKFEKKAGEGVE 211
Query: 332 QSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXXXXXXXXXXXXXX----------FKAMEQ 381
+S++++G+V K H MP +N + +EQ
Sbjct: 212 ESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQ 271
Query: 382 EKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSP 441
E+ LK ++D I NVV V+K + Q + + G+ V +K +E++A+ TG+
Sbjct: 272 EEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAK 331
Query: 442 ILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKG 500
I+++ LT + L + + VEE K + ++F+EGC T+L++G
Sbjct: 332 IVTNVKDLTPEDLGYAE------VVEER-------KLAGENMIFVEGCKNPKAVTILIRG 378
Query: 501 SNSDELKRIKSVVQCAV 517
+ ++ ++ AV
Sbjct: 379 GTEHVIDEVERALEDAV 395
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/252 (20%), Positives = 109/252 (43%), Gaps = 21/252 (8%)
Query: 289 WVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK 348
W + +++ +A +++ K +D+ Y +V+ I G S +++G++ K H
Sbjct: 156 WSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP 215
Query: 349 HMPTEYKNPRXXXXXXXXXXXXXXXXX----------FKAMEQEKDQLKSVMDMIDMCHP 398
M KNPR + ++ E++ ++ + + I P
Sbjct: 216 RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKP 275
Query: 399 NVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGSLTSQKLKHCDS 458
+VV+ EK +S Q ++ +T + ++ R+AR G+ I+S ++L+ D
Sbjct: 276 DVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSR----PEELREED- 330
Query: 459 FYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAVV 518
V AG E K + FI C CT+LL+G++ + L ++ +Q A+
Sbjct: 331 ------VGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQ 384
Query: 519 MAYHLILETSFL 530
+ +++L+ +
Sbjct: 385 VCRNVLLDPQLV 396
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 12/190 (6%)
Query: 314 LDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXXXXXXXXXXX- 372
+DL++ I++ A GS N +Q++ G+V K H MP +N +
Sbjct: 202 VDLDN-IQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPEL 260
Query: 373 ---------XXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLV 423
K +++E++ +K +D I NV++ +K + Q + +KG+ V
Sbjct: 261 DAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAV 320
Query: 424 FDMKLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTL 482
K LE++AR TG ++S+ ++ Q L + +K E+ F EG K P
Sbjct: 321 RRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNPKSIS 380
Query: 483 MFIEGCPTRL 492
+ I G RL
Sbjct: 381 ILIRGGLERL 390
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 60.8 bits (146), Expect = 5e-09, Method: Composition-based stats.
Identities = 56/241 (23%), Positives = 107/241 (44%), Gaps = 24/241 (9%)
Query: 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR 330
+ L+K G +GK E++ + +++L+ +A S+ DG +++ IK++ A GS
Sbjct: 102 AALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSI 161
Query: 331 NQSQIIKGLVFKKHAAHKHMPTEYKNPR----------XXXXXXXXXXXXXXXXXFKAME 380
+ S++I GLV K +H +MP + +N + ++
Sbjct: 162 DDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLD 221
Query: 381 QEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGS 440
QE+ ++ + + + NVV +K + Q I + G+ V +K L+R+++ TG+
Sbjct: 222 QEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGA 281
Query: 441 PILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLK 499
I+ +T++ + VEE GGK + ++ GC TVLL
Sbjct: 282 TIIQDLDQITTEDVG------TAGLVEEKE--VRGGK-----MTYVTGCQNSKAVTVLLH 328
Query: 500 G 500
G
Sbjct: 329 G 329
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 87/409 (21%), Positives = 161/409 (39%), Gaps = 80/409 (19%)
Query: 289 WVDIVTSLSWEAASSLRPG---SVDGK---SLDLNSYIKVKCIAAGSRNQSQIIKGLVFK 342
W + + L+ +A ++R +V+G+ +D+ Y++V+ I G S+++KG++
Sbjct: 167 WSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLN 226
Query: 343 KHAAHKHMPTEYKNPRXXXXXXXXXXXXXXXXXFKAMEQEKD----------QLKSVMDM 392
K H M +NPR +E+E+D Q++ + +
Sbjct: 227 KDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQ 286
Query: 393 IDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGSLTSQK 452
I P +V+ EK VS Q +L+ G +++ +K R+AR TG+ I++ +
Sbjct: 287 ILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNR----VED 342
Query: 453 LK------HCDSFYIKKFVEE------------------HAGFREG-GKRPSKTLMFIEG 487
LK +C F ++ +E H F +G GKR K
Sbjct: 343 LKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVS 402
Query: 488 CPTRL------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHL 523
R CT++L+G + D L I +Q A+ +A ++
Sbjct: 403 AANRFKKISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNV 462
Query: 524 ILETSFLVDQRA--MFSTIPFAEVAGILPMEQQHPALENGNSNVSCFEHSSVES--GSST 579
+L S A M ++ AE A L QQ P ++ + C + +++ G
Sbjct: 463 MLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQQWPYQAVADA-MECIPRTLIQNAGGDPI 521
Query: 580 MDIPISNGFHEDGSYANSGPEGES-----ILSYEPYNPAVFSGFSSLSA 623
+ H G++ +G +G+ ++SY + P V S +A
Sbjct: 522 RLLSQLRAKHAQGNF-TTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTA 569
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 11/189 (5%)
Query: 310 DGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXXXXXXXX 369
DGK++ + IKV GS N +Q I G+V K H MP KN +
Sbjct: 187 DGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIK 246
Query: 370 XXXXXXFKA----------MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419
+ QE + K +++ I NVVL +K + Q + ++G
Sbjct: 247 KTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEG 306
Query: 420 MTLVFDMKLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRP 478
+ V +K +E++A+ TG+ I++ LT L ++ +K ++ F G K P
Sbjct: 307 IYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNP 366
Query: 479 SKTLMFIEG 487
+ I G
Sbjct: 367 KAVSILIRG 375
>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
Length = 392
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 16/179 (8%)
Query: 1400 FRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKF 1459
FR+LR R + Y+ SL+R +++G + F+ + D +IKE+ +
Sbjct: 79 FRNLRDRFGIDDQDYLVSLTRNPPSESEGSDGR--FLISYDRTLVIKEVSSEDIADMHSN 136
Query: 1460 ALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQ 1518
+Y +Y+ + GN T L + LG+Y+V++ S ++VM N+ R + R+
Sbjct: 137 LSNYHQYIVKC--HGN-TLLPQFLGMYRVSVDNEDSY------MLVMRNMFSHRLPVHRK 187
Query: 1519 YDLKGALHARYNTTVDGSGDV--LLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFL 1575
YDLKG+L +R + + ++ L D +F+N + +Y+ K+I + D FL
Sbjct: 188 YDLKGSLVSREASDKEKVKELPTLRDMDFLN--KNQKVYIGEEEKKIFLEKLKRDVEFL 244
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 54.3 bits (129), Expect = 5e-07, Method: Composition-based stats.
Identities = 56/282 (19%), Positives = 121/282 (42%), Gaps = 31/282 (10%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSLRP 306
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 118 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV-- 175
Query: 307 GSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPR-------- 358
VD + IK++ + S + +++IKG++ K MP + + +
Sbjct: 176 --VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 233
Query: 359 --XXXXXXXXXXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESIL 416
+ +EQE+ LK ++ I NV+ +K + Q +
Sbjct: 234 EIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLA 293
Query: 417 EKGMTLVFDMKLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGG 475
++G+ +K +E++A+ TG+ ++++ +L++Q L AG E
Sbjct: 294 KEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLG-------------DAGLVEER 340
Query: 476 KRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAV 517
K +++F+E C T+L++G+ ++ + V AV
Sbjct: 341 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 382
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 56/282 (19%), Positives = 120/282 (42%), Gaps = 31/282 (10%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSLRP 306
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 118 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV-- 175
Query: 307 GSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPR-------- 358
VD + IK++ + S + +++IKG++ K MP + + +
Sbjct: 176 --VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 233
Query: 359 --XXXXXXXXXXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESIL 416
+ +EQE+ LK ++ I NV+ +K + Q +
Sbjct: 234 EIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLA 293
Query: 417 EKGMTLVFDMKLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGG 475
++G+ +K +E++A+ TG+ ++++ L++Q L AG E
Sbjct: 294 KEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLG-------------DAGLVEER 340
Query: 476 KRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAV 517
K +++F+E C T+L++G+ ++ + V AV
Sbjct: 341 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 382
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 54/272 (19%), Positives = 117/272 (43%), Gaps = 33/272 (12%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSLRP 306
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 118 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV-- 175
Query: 307 GSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXXXXX 366
VD + IK++ + S + +++IKG++ K MP + + +
Sbjct: 176 --VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 233
Query: 367 XXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDM 426
E + LK ++ I NV+ +K + Q + ++G+ +
Sbjct: 234 E------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 281
Query: 427 KLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485
K +E++A+ TG+ ++++ +L++Q L AG E K +++F+
Sbjct: 282 KKSDMEKLAKATGANVIAAIAALSAQDLG-------------DAGLVEERKISGDSMIFV 328
Query: 486 EGCPTRLGCTVLLKGSNSDELKRIKSVVQCAV 517
E C T+L++G+ ++ + V AV
Sbjct: 329 EECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 360
>pdb|2YBX|A Chain A, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate
4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate
4-Kinase Type-2 Alpha
Length = 394
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Query: 1400 FRDLRSRCCPSELAYIDSLSRCRNW-DAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDK 1458
FR+LR R + + +SL+R + +S + F + D R+IIK I +
Sbjct: 87 FRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHN 146
Query: 1459 FALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITR 1517
Y +Y+ E T L + LG+Y++ + G E+ ++V N+ R ++ R
Sbjct: 147 ILKKYHQYIVEC---HGITLLPQFLGMYRLNV----DGVEIY--VIVTRNVFSHRLSVYR 197
Query: 1518 QYDLKGALHARYNTTVDGSGDV--LLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFL 1575
+YDLKG+ AR + + + ++ L D +F+N+ +Y+ + K++ + D FL
Sbjct: 198 KYDLKGSTVAREASDKEKAKELPTLKDNDFINE--GQKIYIDDNNKKVFLEKLKKDVEFL 255
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 54/272 (19%), Positives = 116/272 (42%), Gaps = 33/272 (12%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSLRP 306
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 118 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV-- 175
Query: 307 GSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXXXXX 366
VD + IK++ + S + +++IKG++ K MP + + +
Sbjct: 176 --VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 233
Query: 367 XXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDM 426
E + LK ++ I NV+ +K + Q + ++G+ +
Sbjct: 234 E------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 281
Query: 427 KLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485
K +E++A+ TG+ ++++ L++Q L AG E K +++F+
Sbjct: 282 KKSDMEKLAKATGANVITNIKDLSAQDLG-------------DAGLVEERKISGDSMIFV 328
Query: 486 EGCPTRLGCTVLLKGSNSDELKRIKSVVQCAV 517
E C T+L++G+ ++ + V AV
Sbjct: 329 EECKHPKAVTMLIRGTTEHVIEEVARAVDAAV 360
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/272 (19%), Positives = 116/272 (42%), Gaps = 33/272 (12%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSLRP 306
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 118 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV-- 175
Query: 307 GSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXXXXX 366
VD + IK++ + S + +++IKG++ K MP + + +
Sbjct: 176 --VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 233
Query: 367 XXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDM 426
E + LK ++ I NV+ +K + Q + ++G+ +
Sbjct: 234 E------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 281
Query: 427 KLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485
K +E++A+ TG+ ++++ L++Q L AG E K +++F+
Sbjct: 282 KKSDMEKLAKATGANVITNIKDLSAQDLG-------------DAGLVEERKISGDSMIFV 328
Query: 486 EGCPTRLGCTVLLKGSNSDELKRIKSVVQCAV 517
E C T+L++G+ ++ + V AV
Sbjct: 329 EECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 360
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/272 (19%), Positives = 116/272 (42%), Gaps = 33/272 (12%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSLRP 306
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 124 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV-- 181
Query: 307 GSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXXXXX 366
VD + IK++ + S + +++IKG++ K MP + + +
Sbjct: 182 --VDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 239
Query: 367 XXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDM 426
E + LK ++ I NV+ +K + Q + ++G+ +
Sbjct: 240 E------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRV 287
Query: 427 KLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485
K +E++A+ TG+ ++++ L++Q L AG E K +++F+
Sbjct: 288 KKSDMEKLAKATGANVITNIKDLSAQDLG-------------DAGLVEERKISGDSMIFV 334
Query: 486 EGCPTRLGCTVLLKGSNSDELKRIKSVVQCAV 517
E C T+L++G+ ++ + V AV
Sbjct: 335 EECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 366
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 108/251 (43%), Gaps = 20/251 (7%)
Query: 252 EEKQRAMEKV---VSGKFKAIVSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGS 308
EE +R ++++ + KA+ LLK + K D + +S+EA S+
Sbjct: 131 EEAKRVIDEISTKIGADEKAL---LLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELR 187
Query: 309 VDGKS-LDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXXX--- 364
DGK +D ++ I+V G+ + +Q+I G++ K H MP K+ +
Sbjct: 188 -DGKYYVDFDN-IQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLE 245
Query: 365 -------XXXXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILE 417
K + QE++ L+ ++D I NVV+ +K + Q +
Sbjct: 246 IKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSR 305
Query: 418 KGMTLVFDMKLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGK 476
G+ V +K ++++A+ TG+ I+S+ ++S L + K E++ F G K
Sbjct: 306 AGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCK 365
Query: 477 RPSKTLMFIEG 487
P + + G
Sbjct: 366 NPKAVSILVRG 376
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/284 (20%), Positives = 121/284 (42%), Gaps = 35/284 (12%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSL-- 304
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 124 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVD 183
Query: 305 RPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXX---- 360
G VD IK++ + S + +++IKG++ K MP + + +
Sbjct: 184 DEGKVD------KDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNC 237
Query: 361 ------XXXXXXXXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQES 414
+ +EQE+ LK ++ I NV+ +K + Q
Sbjct: 238 AIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHY 297
Query: 415 ILEKGMTLVFDMKLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFRE 473
+ ++G+ +K +E++A+ TG+ ++++ +L++Q L AG E
Sbjct: 298 LAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLG-------------DAGLVE 344
Query: 474 GGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAV 517
K +++F+E C T+L++G+ ++ + V AV
Sbjct: 345 ERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 388
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/284 (20%), Positives = 120/284 (42%), Gaps = 35/284 (12%)
Query: 250 FKEEKQRAME--KVVSGKFKAIVSQLLKSVGVVS-SGKDGESWVDIVTSLSWEAASSL-- 304
++ Q+A E K ++ + A ++L + + S +GK E + + + EA S++
Sbjct: 124 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVD 183
Query: 305 RPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXX---- 360
G VD IK++ + S + +++IKG++ K MP + + +
Sbjct: 184 DEGKVD------KDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNC 237
Query: 361 ------XXXXXXXXXXXXXXXFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQES 414
+ +EQE+ LK ++ I NV+ +K + Q
Sbjct: 238 AIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHY 297
Query: 415 ILEKGMTLVFDMKLHRLERVARCTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFRE 473
+ ++G+ +K +E++A+ TG+ ++++ L++Q L AG E
Sbjct: 298 LAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLG-------------DAGLVE 344
Query: 474 GGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAV 517
K +++F+E C T+L++G+ ++ + V AV
Sbjct: 345 ERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 388
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 21/180 (11%)
Query: 333 SQIIKGLVFKKHAAHKHMPTEYKNPR----------XXXXXXXXXXXXXXXXXFKAMEQE 382
S +++G++ K H M KNPR + ++ E
Sbjct: 4 SCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQME 63
Query: 383 KDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPI 442
++ + + + I P+VV+ EK +S Q ++ +T + ++ R+AR G+ I
Sbjct: 64 EEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARI 123
Query: 443 LSSGSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSN 502
+S ++L+ D V AG E K + FI C CT+LL+G++
Sbjct: 124 VSR----PEELREDD-------VGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGAS 172
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 38.1 bits (87), Expect = 0.040, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 377 KAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVAR 436
K + QE++ L+ ++D I NVV+ +K + Q + G+ V +K ++++A+
Sbjct: 52 KFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAK 111
Query: 437 CTGSPILSS-GSLTSQKLKHCDSFYIKKFVEEHAGFREGGK 476
TG+ I+S+ ++S L + K E++ F G K
Sbjct: 112 ATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGSK 152
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 27/195 (13%)
Query: 320 IKVKCIAAGSRNQSQIIKGLVFKK---HAAHKHMPTEYKNP---------RXXXXXXXXX 367
I +K + G+ +SQ++ G+ FKK +A + P +Y NP
Sbjct: 186 IGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAE 245
Query: 368 XXXXXXXXFKAM-EQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDM 426
++A+ + E + L ++ I VVL + + + ++ M +
Sbjct: 246 IRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRV 305
Query: 427 KLHRLER-VARCTGSPILSSGSLTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485
L+R + C GS S +L+S L C F EE + GG+R + F
Sbjct: 306 PEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVF------EET---QIGGERYN----FF 352
Query: 486 EGCPTRLGCTVLLKG 500
GCP CT++L+G
Sbjct: 353 TGCPKAKTCTIILRG 367
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 36.2 bits (82), Expect = 0.15, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 11/152 (7%)
Query: 336 IKGLVFKKHAAHKHMPTEYKNPR----------XXXXXXXXXXXXXXXXXFKAMEQEKDQ 385
+ G+V K H MP KN + + QE +
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 386 LKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSS 445
K +++ I NVVL +K + Q + ++G+ V +K +E++A+ TG+ I++
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 446 -GSLTSQKLKHCDSFYIKKFVEEHAGFREGGK 476
LT L ++ +K ++ F G K
Sbjct: 121 LDDLTPSVLGEAETVEERKIGDDRMTFVMGCK 152
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 30/227 (13%)
Query: 308 SVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKK---HAAHKHMPTEYKNPRXXXXXX 364
S+D LD + I +K I G+ +S I G+ FKK +A + P ++ NP+
Sbjct: 188 SLDRNDLD-DKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNV 246
Query: 365 XXXXXXXXXXXFKAMEQEKDQLKSVMD-----------MIDMCHPNVVLVEKTVSRDIQE 413
+E +D ++++D ++ N+VL + + +
Sbjct: 247 ELELKAEKDNAEVRVEHVED-YQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQ 305
Query: 414 SILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFR 472
++ + + + RV + G I S+ S + + L C F EE +
Sbjct: 306 FFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALF------EE---MQ 356
Query: 473 EGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAVVM 519
G +R + +GCP CT+LL+G + ++ + A+++
Sbjct: 357 IGSERYN----LFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMI 399
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 271 SQLLKSVG-VVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSL---DLNSYIKVKCIA 326
++LLK + V+SS K G DI++ L EA S + P + + +++S I+V I
Sbjct: 157 NELLKMIKPVISSKKYGSE--DILSELVSEAVSHVLPVAQQAGEIPYFNVDS-IRVVKIM 213
Query: 327 AGSRNQSQIIKGLVFKK 343
GS + S +IKG+VF +
Sbjct: 214 GGSLSNSTVIKGMVFNR 230
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 386 LKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSS 445
L+ V +ID VVL K + + +E + V K L R+AR TG+ ++SS
Sbjct: 282 LERVKKIID-AGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSS 340
Query: 446 GS-------LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498
S S L CD KF ++ + I+G +++L
Sbjct: 341 MSNLEGEETFESSYLGLCDEVVQAKFSDDEC-------------ILIKGTSKHSSSSIIL 387
Query: 499 KGSNS---DELKR 508
+G+N DE++R
Sbjct: 388 RGANDYSLDEMER 400
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 86/217 (39%), Gaps = 22/217 (10%)
Query: 319 YIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRXXXXX---------XXXXXX 369
IKV+ G +++IKG++ K +H MP + ++ +
Sbjct: 186 LIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLD 245
Query: 370 XXXXXXFKAMEQ-EKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKL 428
FKA+++ EK++ + ++ I N+ + + + +L+ + V +
Sbjct: 246 VTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGG 305
Query: 429 HRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEG 487
+E +A TG I+ S LT++KL F G K ++ IE
Sbjct: 306 PEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISF----------GTTKDK-MLVIEQ 354
Query: 488 CPTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLI 524
C T+ ++G N ++ K + A+ + +LI
Sbjct: 355 CKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLI 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,705,764
Number of Sequences: 62578
Number of extensions: 1819471
Number of successful extensions: 3103
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3048
Number of HSP's gapped (non-prelim): 53
length of query: 1582
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1470
effective length of database: 7,964,601
effective search space: 11707963470
effective search space used: 11707963470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)