Query 000391
Match_columns 1582
No_of_seqs 368 out of 1747
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0230 Phosphatidylinositol-4 100.0 5E-206 1E-210 1916.5 78.3 1252 189-1581 232-1517(1598)
2 cd03334 Fab1_TCP TCP-1 like do 100.0 9.6E-48 2.1E-52 439.5 27.2 255 268-534 2-261 (261)
3 COG5253 MSS4 Phosphatidylinosi 100.0 6.1E-49 1.3E-53 454.3 12.3 281 1267-1581 242-523 (612)
4 cd00139 PIPKc Phosphatidylinos 100.0 8.9E-45 1.9E-49 421.4 22.5 188 1386-1581 53-245 (313)
5 smart00330 PIPKc Phosphatidyli 100.0 3.7E-44 8.1E-49 421.2 22.5 192 1382-1581 22-216 (342)
6 KOG0229 Phosphatidylinositol-4 100.0 1.1E-41 2.3E-46 395.4 18.3 185 1387-1581 95-284 (420)
7 TIGR02344 chap_CCT_gamma T-com 100.0 8.3E-41 1.8E-45 417.6 26.1 257 271-540 145-414 (525)
8 TIGR02339 thermosome_arch ther 100.0 2.6E-38 5.6E-43 394.7 29.8 256 271-540 145-413 (519)
9 PLN03185 phosphatidylinositol 100.0 3.4E-39 7.4E-44 404.8 21.8 181 1387-1581 401-585 (765)
10 KOG0364 Chaperonin complex com 100.0 2.3E-39 5E-44 370.5 15.0 254 271-539 148-413 (527)
11 cd03343 cpn60 cpn60 chaperonin 100.0 4.8E-38 1E-42 392.4 26.6 256 271-540 144-410 (517)
12 cd03339 TCP1_epsilon TCP-1 (CT 100.0 8.3E-38 1.8E-42 390.6 27.0 256 271-540 154-420 (526)
13 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.2E-36 2.6E-41 380.3 27.1 256 271-540 138-411 (527)
14 cd03340 TCP1_eta TCP-1 (CTT or 100.0 2.6E-36 5.6E-41 377.0 26.7 249 272-540 150-412 (522)
15 PTZ00212 T-complex protein 1 s 100.0 3.7E-36 7.9E-41 376.0 27.4 249 271-540 159-419 (533)
16 TIGR02343 chap_CCT_epsi T-comp 100.0 4.2E-36 9.1E-41 375.2 27.0 256 271-540 158-424 (532)
17 cd03338 TCP1_delta TCP-1 (CTT 100.0 8.6E-36 1.9E-40 371.9 26.6 255 271-540 137-409 (515)
18 cd03333 chaperonin_like chaper 100.0 1.1E-35 2.4E-40 330.0 23.5 206 272-526 3-209 (209)
19 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2.1E-35 4.6E-40 368.1 28.6 249 271-540 147-407 (517)
20 TIGR02342 chap_CCT_delta T-com 100.0 1.7E-35 3.7E-40 369.0 27.4 255 271-540 138-410 (517)
21 TIGR02347 chap_CCT_zeta T-comp 100.0 5.3E-35 1.2E-39 364.7 27.6 253 271-540 146-419 (531)
22 TIGR02340 chap_CCT_alpha T-com 100.0 6.9E-35 1.5E-39 364.9 27.8 256 271-540 142-415 (536)
23 cd03337 TCP1_gamma TCP-1 (CTT 100.0 2.5E-35 5.3E-40 364.5 23.4 226 271-540 145-373 (480)
24 TIGR02345 chap_CCT_eta T-compl 100.0 4.6E-35 1E-39 365.5 25.5 251 271-540 149-413 (522)
25 KOG0361 Chaperonin complex com 100.0 2.4E-35 5.2E-40 332.3 18.1 250 271-540 152-416 (543)
26 TIGR02341 chap_CCT_beta T-comp 100.0 2.6E-33 5.7E-38 349.2 27.8 249 271-540 148-408 (519)
27 PF01504 PIP5K: Phosphatidylin 100.0 2.7E-34 5.9E-39 327.0 14.2 155 1417-1581 2-161 (252)
28 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 2.1E-32 4.4E-37 338.7 24.5 234 271-540 142-376 (484)
29 cd00309 chaperonin_type_I_II c 100.0 7.6E-32 1.6E-36 332.8 24.8 221 271-539 137-358 (464)
30 TIGR02346 chap_CCT_theta T-com 100.0 1.7E-31 3.8E-36 333.7 26.8 251 271-540 149-411 (531)
31 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 2.8E-31 6E-36 329.0 26.3 249 271-539 117-377 (485)
32 KOG0358 Chaperonin complex com 100.0 1.1E-31 2.4E-36 302.3 14.9 256 270-539 154-426 (534)
33 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.4E-30 5.1E-35 319.7 24.3 223 271-540 139-363 (472)
34 KOG0360 Chaperonin complex com 100.0 4.4E-30 9.5E-35 297.3 15.0 263 263-539 140-420 (545)
35 KOG0363 Chaperonin complex com 100.0 1.7E-29 3.7E-34 283.6 17.6 267 252-539 130-411 (527)
36 KOG0359 Chaperonin complex com 100.0 1.4E-29 3E-34 290.3 13.8 253 270-539 142-409 (520)
37 COG0459 GroL Chaperonin GroEL 100.0 1.8E-27 3.8E-32 294.3 24.9 244 277-540 144-407 (524)
38 KOG0362 Chaperonin complex com 99.9 7.6E-24 1.6E-28 247.7 21.6 233 288-540 170-414 (537)
39 cd03344 GroEL GroEL_like type 99.9 2.3E-23 5E-28 259.8 25.8 221 270-539 138-418 (520)
40 PRK00013 groEL chaperonin GroE 99.9 1.7E-23 3.7E-28 261.8 24.4 222 271-540 141-421 (542)
41 PRK12849 groEL chaperonin GroE 99.9 1.4E-23 3.1E-28 262.4 22.7 221 271-540 141-421 (542)
42 PTZ00114 Heat shock protein 60 99.9 6.9E-23 1.5E-27 257.4 25.2 221 271-540 153-434 (555)
43 TIGR02348 GroEL chaperonin Gro 99.9 6.8E-23 1.5E-27 256.0 23.1 221 271-540 140-420 (524)
44 PRK12851 groEL chaperonin GroE 99.9 8.2E-23 1.8E-27 255.8 23.4 221 272-540 143-422 (541)
45 PRK12850 groEL chaperonin GroE 99.9 2.5E-22 5.4E-27 251.6 23.3 221 271-539 142-421 (544)
46 PRK12852 groEL chaperonin GroE 99.9 1.8E-21 3.9E-26 244.3 25.1 221 271-540 142-422 (545)
47 CHL00093 groEL chaperonin GroE 99.9 3.3E-21 7.1E-26 241.3 20.3 223 271-540 141-421 (529)
48 PRK14104 chaperonin GroEL; Pro 99.9 1.2E-20 2.6E-25 236.5 22.0 221 271-540 142-422 (546)
49 PLN03167 Chaperonin-60 beta su 99.8 6.2E-21 1.4E-25 240.5 15.8 231 271-540 196-476 (600)
50 KOG0357 Chaperonin complex com 99.8 4.2E-19 9.1E-24 199.8 7.8 143 386-539 144-287 (400)
51 KOG0230 Phosphatidylinositol-4 95.8 0.0081 1.8E-07 80.9 4.6 100 781-895 658-757 (1598)
52 KOG0356 Mitochondrial chaperon 93.4 0.78 1.7E-05 57.4 13.0 214 294-539 172-435 (550)
53 PLN02667 inositol polyphosphat 57.1 19 0.0004 43.1 5.9 70 1438-1522 23-99 (286)
54 cd01143 YvrC Periplasmic bindi 49.4 33 0.00071 37.5 6.1 51 390-440 53-110 (195)
55 PF02579 Nitro_FeMo-Co: Dinitr 48.4 36 0.00077 33.0 5.5 49 388-437 44-92 (94)
56 TIGR03659 IsdE heme ABC transp 42.2 35 0.00077 40.3 5.2 52 390-441 84-141 (289)
57 cd01144 BtuF Cobalamin binding 41.7 46 0.001 37.9 5.9 52 390-441 50-108 (245)
58 cd00851 MTH1175 This uncharact 41.4 43 0.00092 33.0 4.9 40 387-427 53-92 (103)
59 PRK09534 btuF corrinoid ABC tr 40.6 45 0.00097 41.0 5.9 52 389-440 111-169 (359)
60 cd01138 FeuA Periplasmic bindi 36.0 57 0.0012 37.3 5.5 50 390-440 59-112 (248)
61 cd00562 NifX_NifB This CD repr 35.3 64 0.0014 31.6 5.0 39 388-427 52-90 (102)
62 PF06296 DUF1044: Protein of u 29.9 1.8E+02 0.0039 30.6 7.3 77 1393-1469 2-106 (120)
63 PF12226 Astro_capsid_p: Turke 28.7 32 0.0007 37.5 1.7 52 1392-1449 102-156 (230)
64 cd01146 FhuD Fe3+-siderophore 27.7 1E+02 0.0023 35.4 5.9 52 390-441 58-115 (256)
65 PF13324 GCIP: Grap2 and cycli 27.5 96 0.0021 36.8 5.6 10 288-297 225-234 (275)
66 PF01497 Peripla_BP_2: Peripla 25.9 1E+02 0.0022 34.7 5.2 51 391-441 54-112 (238)
67 cd04743 NPD_PKS 2-Nitropropane 25.4 1.4E+02 0.0031 36.3 6.6 55 388-443 73-127 (320)
68 COG1433 Uncharacterized conser 25.1 1.5E+02 0.0033 31.2 5.8 52 388-440 56-107 (121)
69 PRK03379 vitamin B12-transport 23.6 1.1E+02 0.0024 35.8 5.0 51 390-440 65-122 (260)
70 PHA02682 ORF080 virion core pr 23.1 1.2E+02 0.0025 34.1 4.6 66 904-976 192-257 (280)
71 cd01147 HemV-2 Metal binding p 23.0 95 0.0021 35.7 4.4 51 390-440 67-126 (262)
72 cd01140 FatB Siderophore bindi 23.0 1.4E+02 0.0031 34.6 5.8 51 390-440 65-122 (270)
73 cd00636 TroA-like Helical back 22.3 95 0.0021 31.2 3.8 35 390-424 54-88 (148)
74 cd01141 TroA_d Periplasmic bin 22.2 83 0.0018 34.4 3.5 34 390-423 62-96 (186)
75 PF04810 zf-Sec23_Sec24: Sec23 22.1 49 0.0011 27.9 1.3 32 4-47 4-35 (40)
76 COG1504 Uncharacterized conser 21.4 2.3E+02 0.005 29.4 6.0 48 394-441 58-111 (121)
77 PF07282 OrfB_Zn_ribbon: Putat 21.3 48 0.001 30.7 1.2 31 3-49 29-59 (69)
78 cd01139 TroA_f Periplasmic bin 21.2 1.3E+02 0.0028 36.3 5.2 51 390-440 84-147 (342)
79 PF01636 APH: Phosphotransfera 21.1 3.5E+02 0.0075 29.7 8.3 72 1427-1510 6-78 (239)
80 COG1997 RPL43A Ribosomal prote 20.9 76 0.0016 31.4 2.5 43 776-848 32-74 (89)
No 1
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-206 Score=1916.50 Aligned_cols=1252 Identities=39% Similarity=0.618 Sum_probs=894.0
Q ss_pred CCCccCCC--cccCCCCCCCCcccccccccCCCCCcccCCCCCCcCC---cCCCCCCcccCCCcccchHHHHHHHHHHHH
Q 000391 189 NDNEMDMQ--IWEPPEPEDPEDDIEGSIAYNDDDEDEECGDGTKWGK---PSSLSHFRDEGGGRLKFKEEKQRAMEKVVS 263 (1582)
Q Consensus 189 ~~~d~~~~--~w~pp~p~~~~d~~~~~~~~~ddd~~~~~~~~~~~~~---~ss~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (1582)
+++||+++ +|.||+||+|+||+|+.++|+||+++| .++.|++ +.+|+.+.....+ +..+++++.|+.+..
T Consensus 232 ~~~d~~~~~~~~~p~~pene~dd~~~~~~~~~~~~~D---~~~~~~~~~~s~s~s~~~~~~~~--~~~ee~~~~m~~~~~ 306 (1598)
T KOG0230|consen 232 EILDFENNGLLWEPPEPENEEDDAESVLADDDDDEGD---TSGKWNPLRLSNSFSAPEYKSKD--KSAEEDEKVMRNVVE 306 (1598)
T ss_pred cccchhhccCCCCCCCCCcccccchhccccccccccc---cccccccccccCccCCCCccccc--cchhhcchhhhcccc
Confidence 78999999 999999999999999988675554433 2367876 6788887554555 788999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCC-CcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEe
Q 000391 264 GKFKAIVSQLLKSVGVVSSGK-DGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFK 342 (1582)
Q Consensus 264 ~h~~~l~~qLL~~~~~sl~sK-~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~ 342 (1582)
.||++++.||++.+.+++.++ ...+|.++++.|+|+|+..++|+...++.|||.+|||||||+||++.||++|+||||+
T Consensus 307 ~~fr~~~a~Llr~~~ls~~~d~~~~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~s 386 (1598)
T KOG0230|consen 307 SHFRALVAQLLRSENLSVVMDGAHQEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCS 386 (1598)
T ss_pred chHHHHHHHHhcccCcCccccchhhhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEee
Confidence 999999999999999885443 4458999999999999999999998899999999999999999999999999999999
Q ss_pred eccCCCCCCccccCCcEEEEEecCCccccc--cchhhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcC
Q 000391 343 KHAAHKHMPTEYKNPRLLLIRGVLGLSSSG--LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1582)
Q Consensus 343 Knvahk~Mp~~i~nPRILLL~~~LEy~r~e--lsSle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g 419 (1582)
|+++||+|++++++|||+|+.|+|||+|.. |+|+++ ++||++||+.+|+||...+||||||+|+|+++||+||..+|
T Consensus 387 Kn~~~k~M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~ 466 (1598)
T KOG0230|consen 387 KNVAHKRMATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKG 466 (1598)
T ss_pred cchhhhhhhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccC
Confidence 999999999999999999999999999976 999999 99999999999999999999999999999999999999999
Q ss_pred CeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000391 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498 (1582)
Q Consensus 420 I~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTILL 498 (1582)
|+++.|||+..|+||||||||+|++++| ++.++||+|+.|+++++.++| +..||+|||+||++++||||||
T Consensus 467 I~lvlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~h--------k~sKTlmffegc~~~lG~TiLL 538 (1598)
T KOG0230|consen 467 ISLVLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEH--------KPSKTLMFFEGCPKPLGCTILL 538 (1598)
T ss_pred eEEEEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcc--------cchhhhHHhhcCCCCCCceEEe
Confidence 9999999999999999999999999999 999999999999999999876 5689999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccCCcccc-ccCCCccccccccccCCCCCcccccCcccCCC
Q 000391 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTIPFAEV-AGILPMEQQHPALENGNSNVSCFEHSSVESGS 577 (1582)
Q Consensus 499 RG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1582)
||+..++|++||+|++++++++||+.||++||+|.||++........ +..+++... ..+.++.....
T Consensus 539 rG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~~~~~~~~~~~~~~~~~~------~~s~~~~~t~s------ 606 (1598)
T KOG0230|consen 539 RGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASISSPKLSIPTSVETSIINR------SISTSPGETDS------ 606 (1598)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccccccccceeccccccc------ccccCCCCCcc------
Confidence 99999999999999999999999999999999999999886433221 111110000 00111100000
Q ss_pred CCccCCCCCCCcCCCCccCCCCCCCccccccCCCCccccCccccccccccccccCCCCcccccCC-----Cccccccccc
Q 000391 578 STMDIPISNGFHEDGSYANSGPEGESILSYEPYNPAVFSGFSSLSASLRKVIGDNFPLSSAAAYP-----SLTSYFGFRG 652 (1582)
Q Consensus 578 ~~~~~~~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~P~~~~~~~~-----~l~~~~~~~~ 652 (1582)
.....+......+... .+ .....+.++..|. +....|+....+++ .+..+.+.-.
T Consensus 607 t~~~a~~~~~~~e~~~-~~-~~~~~~~ls~sp~------------------~~~~~~~~~i~P~~~~~e~~~~~~~~~~~ 666 (1598)
T KOG0230|consen 607 TAEKAPVEALQVEPNR-FN-GALSSELLSSSPF------------------LEFPLDLLEIAPGELVIETRLSSYSKGPK 666 (1598)
T ss_pred hhcccchhhhccchhh-hh-cccccceeecccc------------------cccCCCccccCCccceeecchhhhcCchh
Confidence 0000010000000000 00 0000111211111 00001100000000 0000000000
Q ss_pred ccccCccccCCCccccccccCCCCCCccCCCCccccc---ccCCCCCCCCCCCCCCCCC--CCCCCCCCcccCCccccCC
Q 000391 653 REQSGQITEDVPVSTIMDASLDGPCDTEAKSSSDEEK---SLDGQPTSLPSCPEAPLSM--GKDCGNDEDHSQSQEDANA 727 (1582)
Q Consensus 653 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~q~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 727 (1582)
..+-....+... ..++.. ..+-...+.+..... ....+. +..+... .++..-.+-+.+..++.++
T Consensus 667 ~~~lv~~~es~~-~~~~~s---~~~~~~~l~e~~~~~~~~~~~k~~------~~~~~~~~~~~~~~~~~~e~~~s~~~~~ 736 (1598)
T KOG0230|consen 667 QNGLVPAHESVL-NDLHES---TLSILSKLPETRSGTHEGNEDKGP------GLEPELANNQNIQRPEETEEQSSKDALD 736 (1598)
T ss_pred hccccccccccc-cccccc---cccccccccchhcccchhccccCc------cccccccccccccchhhhhhhhcccCCC
Confidence 000000000000 000100 000000000000000 000000 0000000 0000000111125678899
Q ss_pred CCCCCeEEEEEeeccCCCCCccCCCcEEEEeccCCCCccHHHHHHHHhhccCCCCCCCCCChhcceeeeeecCcEEEEEE
Q 000391 728 SLDSQSILVLMSSRNALRGTICEQSHFSHIMFYKNFDVPLGKFLQDNLLNQRKQCASCSELPEAHFYYYARHNKQLTIRV 807 (1582)
Q Consensus 728 p~~HQsI~VL~Ss~c~~~~~~C~~P~lv~I~fY~~~D~tLGqFLe~~~~~~~~~C~sC~~pm~~H~r~YvH~~g~ltI~V 807 (1582)
|.+||+|+||||++|.+++.+|++|||++|+|||.+|+||||||+++||++.|.|++|.+||++|+|||||++|++||.|
T Consensus 737 ~~~HQsilVl~ss~~~~k~~~C~r~~l~~ikyy~~~D~~lg~fL~~~~f~~~~~C~sC~~~~laHv~~yvh~~g~l~I~v 816 (1598)
T KOG0230|consen 737 PSSHQSILVLFSSRSVLKGSVCERPHLLRIKYYGSFDKPLGRFLRDYLFDQRYMCPSCNEPMLAHVRCYVHGNGSLTISV 816 (1598)
T ss_pred ccccceeEEEEeeeeeccCCccccccEEEEEeeccccchHhHHHHHHHhcccccCccccchHHHHHHHHhhccCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCccccCCCCCCCcEEEeecCCCCCCCCCCCCCCceEEcccccccccHHHHHHHhcCCCCCCCCCCCCCCCcccccee
Q 000391 808 KRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAACGLSFGKFLELSFSHHSSSTRLSSCGHSLHRDFLY 887 (1582)
Q Consensus 808 e~l~~~~~lpge~~~~I~MWs~Ck~C~~~~g~~~sTp~v~MSd~tW~~SFGKfLELsF~~~~~~~r~~~C~Hsl~rDhlr 887 (1582)
++++.. +||+.+|+|||||||++|++. ||+|++|+||++||++||||||||+||+|+++.|++.|||+|||||||
T Consensus 817 ~~~~e~--l~~e~~~kI~~w~~ClkC~~~---~~sT~rv~~Sdaaw~lSfgKfLEl~fs~~a~~~R~~~C~Hsl~rD~L~ 891 (1598)
T KOG0230|consen 817 KKLPEL--LPGEQKGKIWMWSRCLKCNRF---PPSTRRVVMSDAAWGLSFGKFLELSFSNHATANRVASCGHSLHRDCLR 891 (1598)
T ss_pred eccccc--cccccCceEEEEeccccCCCC---CCCcceeEcchhhHhhhHHHHHHhhhccccccccccCCcchhhhhhhh
Confidence 999987 899999999999999999985 899999999999999999999999999999999999999999999999
Q ss_pred ecccCCeEEEEEeceeeeeEEecCCCeeEEccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhh
Q 000391 888 FFGLGPMVGMFKYSPFTTYNMCVPPQKLEFSNSINKWLKEEFQNVYTKGILLFSEVESSLKQIGSRFVGSTLNLQGSLKE 967 (1582)
Q Consensus 888 yFg~~~~Va~F~YspI~v~ev~lPp~~l~~~~~~~~~l~~E~~~v~~k~~~~f~sV~~rL~~ik~~~~~~~~~~~~~~~~ 967 (1582)
|||||+|||+|+|++|++|+|++||.+|+|++..++|+++|+++|+.||+.+|++|.++|.+|+.+-+. +..
T Consensus 892 ffgf~~mva~f~ys~i~v~~v~lpp~~l~~~~~~~~~~~~e~k~v~~k~~~~~n~v~~~l~~i~~~~~~--------~~~ 963 (1598)
T KOG0230|consen 892 FFGFGNMVACFRYSPIEVYEVDLPPSKLEFNHIQQEWLQEEIKEVIEKGEELYNEVLERLSRIAEKDEN--------RPL 963 (1598)
T ss_pred hcccCCceeeeeeccceeEEEeCChhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--------cch
Confidence 999999999999999999999999999999944449999999999999999999999999999986211 357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhhHHHHHHHHHHHHHHHhhHhHHhhhccCCCCcc-cccCCCCCCCCC
Q 000391 968 FSVTSEILKQERSVFEVDIQKTVAKKVHSDEALHKLLSLNRLRWELLIESCIWDRRLHSLLLPDPTV-VITGATEKPGPE 1046 (1582)
Q Consensus 968 i~eL~~ll~~ek~~~~~~l~~~~~~~~~~~~~~~~il~LN~l~r~L~~~~~~WD~rL~~l~~~~~~~-~~~~~~~~~~~e 1046 (1582)
+.+|+.+|.+|+.+|.+.|+.++.+.....+..++++.||++||.|.+.++.||.||+.+....+.. ..+.+.++. +
T Consensus 964 i~~l~~~l~~e~~~f~~~l~~~~~~~~~~~~~s~d~l~l~~~rr~l~~~s~~w~~~l~s~~~~~k~~~~~~~~~~~~--~ 1041 (1598)
T KOG0230|consen 964 IQELKELLKHEKKEFKQNLQPIFTLEVDDGQLSHDILALNRDRRALLASSYLWDERLISLSKSLKLESSKDTKPKES--E 1041 (1598)
T ss_pred hhhhhhhhhhhHHHHHHhhhhhhhhccccCcchhhHHHHHHHHHHHHhhhccccccchhhhhhhccccccccccccc--c
Confidence 8999999999999999999999998887888999999999999999999999999999876443310 000001111 1
Q ss_pred cccccccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCccCcccccchhhhhhcccCCCCCCCCcCccc-cccccccccccc
Q 000391 1047 QTKVKMDGTTAKGNEVPEPEVDSGNGDNVSNNFGNLEVLPDVAAEADELVVKEIPIDGPDRESGERD-HKKTTVLKDVET 1125 (1582)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~ 1125 (1582)
+. .+ ......+++......++....++......+....+.......+. ....+... ..... .+.+.
T Consensus 1042 ~~-----~~-~~~~r~p~~~k~~~~~~~~~~~~s~~~~~~~~~lp~~~~s~~~d-----~~~~~~~~~~~~~~--s~~~~ 1108 (1598)
T KOG0230|consen 1042 TN-----ST-AKRKRSPEPQKGVDEDSFLTDSSSDVSSLEHLNLPLPEDSNSTD-----TGLSGPSEVLEDNE--SIDEM 1108 (1598)
T ss_pred cc-----Cc-cccccCchhhccccccccccccccccCccccccCCCCCcccccc-----hhccCccccccccc--chhhc
Confidence 10 00 00000111100000000000000000000000000000000000 00000000 00000 00000
Q ss_pred c------cc-cCCCCCcccccccccccCCCCCCCCCCCccccccccccccccccccCCCcccCCCCCccCCCCCCCCccc
Q 000391 1126 S------IA-SDLSSTSLANEDSMVRSNVSDYLSGDDNVQAGKFLMSENLQVDKVVPNSQYLANSGSVVDPNASKNETST 1198 (1582)
Q Consensus 1126 ~------~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~ 1198 (1582)
. .+ .....+++.+.++.+|. ..++.|+.......+...+......+
T Consensus 1109 ~~~v~n~~s~~~~~~~~~~~~l~~~~~------------------------g~r~~~~~~P~s~~~~~~~~~~~~~~--- 1161 (1598)
T KOG0230|consen 1109 LGSVRNTYSLANKVRKILKQILDSATI------------------------GNRANPKSSPFSGQDHSTDLPLESNP--- 1161 (1598)
T ss_pred ccccccccchhhHHHHHHHHhcccccc------------------------cccccCCCCCCchhhhccccccccCC---
Confidence 0 00 00000001111111111 01111100000000000000000000
Q ss_pred ccccchh-hhccccccCchhHHHH-HHHHhhhcCCCCcccccccCCCCCCcchhhhhccccccccccCCCCCcceEeccC
Q 000391 1199 HSLLSDL-EKLNGWFWMPFSELQQ-IYMKDLQRGFVPKFECVSRYTPEHLPTVYQLISEEGTRMHIPLGAENYMVSDYEG 1276 (1582)
Q Consensus 1199 ~~~~~~~-~~~~~~~~~p~~~~~~-~~~~~~~~~~l~k~~~v~~~~p~~~~~~~~~~~~~~~~l~~p~~~~~~vv~V~ed 1276 (1582)
+... .+...|++.||..+.. .+.++++... ++.......-|.+.+.-.....+.++|+.+|++.++.+|+||||
T Consensus 1162 ---~~~~e~~~~~~~e~~~~~~~~~~~~~e~~lns-~~~~~~~~~~~k~~~s~~~s~~~~~~rLl~p~~~ndl~vp~~ed 1237 (1598)
T KOG0230|consen 1162 ---IHVLEKELSSWIEDPLTNMYYREATKELSLNS-QKNSAETKEPPKYPSSESESEPESSSRLLLPLGLNDLVVPVYED 1237 (1598)
T ss_pred ---ccccccccHHHHhhhhhhHhHHHHHHHHHhhc-chhhcccccCCcCcccccccccccccceeccccCCcccCCcccC
Confidence 0111 1455799999988775 5545443322 22222223344454443333457788999999999999999999
Q ss_pred CcchhhhhhhcccCccccccccccCCCCCCCCcccccccccccccc-Ccccc-ccccccCCCCCCcccccccccCCCccc
Q 000391 1277 ELSSIIACALAVLKEMPLSTVVFNEDSGRDGDMAVKTIDSLRSLTR-IPTMA-SSLWSVNGSSDSDSIYASLSISSEDSR 1354 (1582)
Q Consensus 1277 EpSSiIA~aLss~eY~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~-ss~~s~~~~~~s~~~~~~~sf~~~~~~ 1354 (1582)
||+|+|||||++.+|..+... . .....-..+.+.. ..... ...|... +.+... +..
T Consensus 1238 pp~s~ia~al~s~~~~~q~~~----p-------~~sis~~~S~~~~~~s~~~e~~~~~~~-sl~~s~----l~~------ 1295 (1598)
T KOG0230|consen 1238 PPPSLIAYALSSKERINQESS----P-------GLSISFSLSNLQGRLSKISEFDDTKSE-SLDNSG----LES------ 1295 (1598)
T ss_pred CCchhhhhhhcchhhccCCCC----C-------Cccccccccccccchhhhhhhhhhhhc-cccccc----cch------
Confidence 999999999999888765431 0 0000000000000 00000 0000000 000000 000
Q ss_pred ccccccccccccCCCCCCCCCceeeeeecccCCCcEEEEEcCHHHHHHHHHHcCCChHHHHHHhccccccccCCCCccce
Q 000391 1355 FSSFDGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSF 1434 (1582)
Q Consensus 1355 ~~~~d~~~~~~s~~~~e~~~~~v~~~~~f~~~~~~~~~k~y~p~~F~~LR~~~gi~~~~yi~SLs~~~~~~~sgGKSGs~ 1434 (1582)
+.+ ..++.++++. ++..+++.++|++|+.+|+|++|||++|++||+.||.++++||+||+||.+|.++|||||++
T Consensus 1296 -s~~---~~~e~l~~~~-~~~~~h~~~~f~egk~k~svk~~yAe~F~~LR~~c~~sEe~fIrSLsRc~~W~aqGGKSgs~ 1370 (1598)
T KOG0230|consen 1296 -SSY---RRGENLQKSK-LETRTHLEYQFSEGKAKYSVKCYYAEQFRALRKICCPSEEDFIRSLSRCVKWEAQGGKSGSF 1370 (1598)
T ss_pred -hhh---cchhhccccc-cccccceeeeccCCceEEEEEEEehhhHHHHHHhhCchHHHHHHHHhcCcccccCCCcccce
Confidence 011 1123333332 45678999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcEEEEeccHHHHHHHHHHHHHHHHHHHhhccCCCCceeeeeeeEEEEEeecCCCCceeeEEEEEEeccCCCCC
Q 000391 1435 FVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFERN 1514 (1582)
Q Consensus 1435 F~~T~D~rfIIKtis~~E~~~fl~~lp~Yf~y~~~~~~~n~~TlL~Ki~Gly~i~~~~~~~g~~~k~~~iVMeNlf~~~~ 1514 (1582)
|+||.|||||||+|++.|+++|++|||+||+||.+++++..||+||||||+|||.+|++++||+.||++||||||||+++
T Consensus 1371 F~KTlDDRFIiKq~sk~EleSFikFAP~YFkYl~~s~~~~~PT~LAKIlGiyqV~vK~~~sgke~K~DvmVMENLfY~r~ 1450 (1598)
T KOG0230|consen 1371 FAKTLDDRFIIKQMSKTELESFIKFAPAYFKYLTESISQKSPTCLAKILGIYQVSVKSPKSGKETKMDVMVMENLFYGRK 1450 (1598)
T ss_pred eeccccchhhhhhccHHHHHHHHhhhHHHHHHHHHHHhcCCcchhhhhheeEEEEEecCCCCceeEeeeeeehhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEecCccCCCccCCCCCCCcceeccchhhccCCCCeeeCHHHHHHHHHHHHHHHHHHhhCCCC
Q 000391 1515 ITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNVSGNL 1581 (1582)
Q Consensus 1515 i~~~yDLKGS~~~R~~~~~~~~~~vLkD~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nim 1581 (1582)
++|+||||||+|||++..+++.+.||+|+||+++++++||||++++|+.|.++|||||.||+++|||
T Consensus 1451 vsRifDLKGS~RnR~v~~t~~~d~VLLDeNlVe~~~~sPIfV~~~sK~lL~~aiwNDT~FLas~~VM 1517 (1598)
T KOG0230|consen 1451 VSRIFDLKGSLRNRYVPTTSGADEVLLDENLVEMMWTSPIYVGSHSKRLLRRAIWNDTSFLASINVM 1517 (1598)
T ss_pred cceeeeccchhhhccCCCCCCCceEEecHHHHhhhhcCCeeehHhHHHHHHHHHhcchHHhhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
No 2
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=9.6e-48 Score=439.52 Aligned_cols=255 Identities=49% Similarity=0.835 Sum_probs=237.1
Q ss_pred HHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCC
Q 000391 268 AIVSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAH 347 (1582)
Q Consensus 268 ~l~~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvah 347 (1582)
+++.|||.++++. ....|.+.|++|+++|+..+.++...++.+|+.+||+|+|++||++.||++|+|+||+|+++|
T Consensus 2 ~~~~~~~~~~~~~----~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~ 77 (261)
T cd03334 2 ALLAQLLKDEGIS----NDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAH 77 (261)
T ss_pred hHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCC
Confidence 6789999999993 467899999999999999997654334579987789999999999999999999999999999
Q ss_pred CCCCccccCCcEEEEEecCCccccc--cchhhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCCeEec
Q 000391 348 KHMPTEYKNPRLLLIRGVLGLSSSG--LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVF 424 (1582)
Q Consensus 348 k~Mp~~i~nPRILLL~~~LEy~r~e--lsSle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~ 424 (1582)
++||++++||||+||+|+|||++++ +.+++. +++|++|++++|++|+++|||||||+|+|+++|++||.++||++++
T Consensus 78 ~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~ 157 (261)
T cd03334 78 KRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVL 157 (261)
T ss_pred ccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999876 778999 9999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCceecccC--CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCC
Q 000391 425 DMKLHRLERVARCTGSPILSSGS--LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSN 502 (1582)
Q Consensus 425 nVK~~~LeRIAR~TGA~IisSid--L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTILLRG~s 502 (1582)
+|++.+|+|||+||||.|+++++ ++++.||+|+.|++++++.+. +++++|+||+||+.+.+|||+|||++
T Consensus 158 ~v~~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~--------~~~~~~~~~~~~~~~~~~TIlLRG~t 229 (261)
T cd03334 158 NVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEH--------GRSKTLMFFEGCPKELGCTILLRGGD 229 (261)
T ss_pred ecCHHHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcC--------CCceeEEEEecCCCCceeEEEEECCC
Confidence 99999999999999999999954 889999999999999986421 24589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCeeecCCC
Q 000391 503 SDELKRIKSVVQCAVVMAYHLILETSFLVDQR 534 (1582)
Q Consensus 503 ~~~L~evKrvl~dav~v~~~l~lE~s~l~ggG 534 (1582)
.++|+++||+++||++++||+++|.++++|.+
T Consensus 230 ~~~lde~eR~i~Dal~v~~~~~le~~~~~~~~ 261 (261)
T cd03334 230 LEELKKVKRVVEFMVFAAYHLKLETSFLADEF 261 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC
Confidence 99999999999999999999999999998864
No 3
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-49 Score=454.28 Aligned_cols=281 Identities=29% Similarity=0.349 Sum_probs=219.5
Q ss_pred CCcceEeccCCcchhhhhhhcccCccccccccccCCCCCCCCccccccccccccccCccccccccccCCCCCCccccccc
Q 000391 1267 ENYMVSDYEGELSSIIACALAVLKEMPLSTVVFNEDSGRDGDMAVKTIDSLRSLTRIPTMASSLWSVNGSSDSDSIYASL 1346 (1582)
Q Consensus 1267 ~~~vv~V~edEpSSiIA~aLss~eY~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ss~~s~~~~~~s~~~~~~~ 1346 (1582)
.+.-|++++|||||.|||+|+++||+.++....... .+++..-.... .+.+ +..+..
T Consensus 242 s~S~~iir~~~pss~~a~~~s~~d~~~k~mr~r~se---------~~De~~l~~~~----le~g----------h~n~~~ 298 (612)
T COG5253 242 SDSDVIIREDEPSSLIAFCLSTSDYRNKMMRLRDSE---------TMDERLLNGMP----LEGG----------HRNPQE 298 (612)
T ss_pred CccccccccCCcchhhhccccchhHHHHHHhhhhhh---------cchhhhccccc----cccc----------cccchh
Confidence 455678999999999999999999998775331110 00000000000 0000 000000
Q ss_pred ccCCCcccccccccccccccCCCCCCCCCceeeeeecccCCCcEEEEEcCHHHHHHHHHHcCCChHHHHHHhcccccccc
Q 000391 1347 SISSEDSRFSSFDGLNLLESLIPPEVLSPEVSIGISKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDA 1426 (1582)
Q Consensus 1347 sf~~~~~~~~~~d~~~~~~s~~~~e~~~~~v~~~~~f~~~~~~~~~k~y~p~~F~~LR~~~gi~~~~yi~SLs~~~~~~~ 1426 (1582)
++. -. ...-..++..+.+|.++. -++.+++|..|...|+||+|||++|+.||++||+++. |+.++++|..|..
T Consensus 299 syn--ml-tgirvtlsr~e~iM~~~t---dth~~e~~~eg~~~~s~K~y~~e~Fr~lR~l~g~~~a-lvsl~sryil~E~ 371 (612)
T COG5253 299 SYN--ML-TGIRVTLSRIEEIMIKKT---DTHLNEQFEEGLYEFSCKDYFPEVFRELRALCGCDEA-LVSLLSRYILWES 371 (612)
T ss_pred hhh--hh-hhhHHHHHHHHHHhcCCc---CccchhhccccceeeeHHhhCHHHHHHHHHHhCCcHH-HHHHHhhhheecc
Confidence 000 00 000011233445554431 2566788999999999999999999999999999885 9999999999999
Q ss_pred CCCCccceEEEecCCcEEEEeccHHHHHHHHHHHHHHHHHHHhhccCCCCceeeeeeeEEEEEeec-CCCCceeeEEEEE
Q 000391 1427 KGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQ-PKSGKEMRHDLMV 1505 (1582)
Q Consensus 1427 sgGKSGs~F~~T~D~rfIIKtis~~E~~~fl~~lp~Yf~y~~~~~~~n~~TlL~Ki~Gly~i~~~~-~~~g~~~k~~~iV 1505 (1582)
.|||||||||||.|.|||||||++.|+..|..++-+|+.|+.. ||.|+||||||+|+|+++. ..+++.+|+||||
T Consensus 372 ~~GKSGSff~~trD~kfIiKti~hsE~~~~r~~~~eY~~~V~~----np~T~l~ki~G~yrv~~~~s~~~~k~~K~~fiV 447 (612)
T COG5253 372 NGGKSGSFFLFTRDYKFIIKTISHSEHICFRPMIFEYYVHVLF----NPLTLLCKIFGFYRVKSRSSISSSKSRKIYFIV 447 (612)
T ss_pred CCCcccceEEEeccchhhhhhhhhhhHHHHHHHHHHHHHHHHc----CchHHHHHHhceeEEeccccccccccceeEEEE
Confidence 9999999999999999999999999995555555555555554 7889999999999999986 4567889999999
Q ss_pred EeccCCCCCcceeEEecCccCCCccCCCCCCCcceeccchhhccCCCCeeeCHHHHHHHHHHHHHHHHHHhhCCCC
Q 000391 1506 MENLTFERNITRQYDLKGALHARYNTTVDGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNVSGNL 1581 (1582)
Q Consensus 1506 MeNlf~~~~i~~~yDLKGS~~~R~~~~~~~~~~vLkD~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nim 1581 (1582)
||||||++.|+++|||||||+||++..++....||+|+|.++.++++|+++....|+.|+.|||+|+.||+++|||
T Consensus 448 MeNlf~~~~i~~ifDLKGS~~Nr~ve~~gk~~s~l~~mndv~wI~es~~~~~g~~Kk~~~sqv~~Dv~fLsklniM 523 (612)
T COG5253 448 MENLFYPHGIHRIFDLKGSMRNRHVERTGKSMSVLLDMNDVEWIRESPKIVFGLKKKLLLSQVWNDVLFLSKLNIM 523 (612)
T ss_pred ecccCCCCCcceEEeccCchhhhhhhhhccccchhccchhHHHHHhCchhhhhHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
No 4
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=100.00 E-value=8.9e-45 Score=421.42 Aligned_cols=188 Identities=36% Similarity=0.609 Sum_probs=174.8
Q ss_pred CCCcEEEEEcCHHHHHHHHHHcCCChHHHHHHhccccccccC-CCCccceEEEecCCcEEEEeccHHHHHHHHHHHHHHH
Q 000391 1386 GKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWDAK-GGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYF 1464 (1582)
Q Consensus 1386 ~~~~~~~k~y~p~~F~~LR~~~gi~~~~yi~SLs~~~~~~~s-gGKSGs~F~~T~D~rfIIKtis~~E~~~fl~~lp~Yf 1464 (1582)
....|+|++|+|.+|++||++||+++++|+.||++|..|..+ ||||||+||+|.|+|||||||++.|++.|+++||+||
T Consensus 53 ~~~~f~fk~Y~P~vF~~lR~~~gi~~~dy~~Sl~~~~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~ 132 (313)
T cd00139 53 LSADFKFKDYCPEVFRALRELFGIDEADYLRSLCRSPLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNYY 132 (313)
T ss_pred CCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhcCCCCccCCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999764 9999999999999999999999999999999999999
Q ss_pred HHHHhhccCCC-CceeeeeeeEEEEEeecCCCCceeeEEEEEEeccCCC-CCcceeEEecCccCCCccCCC--CCCCcce
Q 000391 1465 KYMNESFDSGN-QTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFE-RNITRQYDLKGALHARYNTTV--DGSGDVL 1540 (1582)
Q Consensus 1465 ~y~~~~~~~n~-~TlL~Ki~Gly~i~~~~~~~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~vL 1540 (1582)
+||.+ || +|||+||||+|+|++.+ |...++|||||+|||++ ..|+++||||||+++|.+... ....+||
T Consensus 133 ~~~~~----n~~~TLL~k~~Gl~~i~~~~---~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~vl 205 (313)
T cd00139 133 EYITQ----NPQNTLLPKFFGLYRVKVKS---GTGKKVDFLVMENLFYSRLKIHRKYDLKGSTRNREASKKEKQKENPVL 205 (313)
T ss_pred HHHHh----CCCCcchhhheEEEEEEEcC---CCCceEEEEEEecCCCCCccceEEEECCCCCCCCCcCcccccCCcccc
Confidence 99999 79 99999999999999864 23357899999999999 489999999999999999763 3467899
Q ss_pred eccchhhccCCCCeeeCHHHHHHHHHHHHHHHHHHhhCCCC
Q 000391 1541 LDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNVSGNL 1581 (1582)
Q Consensus 1541 kD~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nim 1581 (1582)
||+||++.. +.||+|+++.|..|++||++||+||+++|||
T Consensus 206 KD~df~~~~-~~~i~l~~~~k~~l~~qL~~D~~FL~~~~iM 245 (313)
T cd00139 206 KDLNLLEMI-EQPLFVGEHSKKALLTQIKRDCEFLESLNIM 245 (313)
T ss_pred chhhhHhhc-CceEEeCHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 999999987 5689999999999999999999999999998
No 5
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=100.00 E-value=3.7e-44 Score=421.19 Aligned_cols=192 Identities=33% Similarity=0.502 Sum_probs=178.2
Q ss_pred ecccCCCcEEEEEcCHHHHHHHHHHcCCChHHHHHHhccccc-cccCCCCccceEEEecCCcEEEEeccHHHHHHHHHHH
Q 000391 1382 SKSLGKGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRN-WDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFA 1460 (1582)
Q Consensus 1382 ~f~~~~~~~~~k~y~p~~F~~LR~~~gi~~~~yi~SLs~~~~-~~~sgGKSGs~F~~T~D~rfIIKtis~~E~~~fl~~l 1460 (1582)
.++.....|+|++|+|++|++||+++|+++++|+.||++|.. |.++||||||+||+|.|+|||||||++.|++.|+++|
T Consensus 22 ~~~~~~~~~~~~~Y~P~~F~~lR~~~~i~~~~y~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiiKti~~~E~~~l~~~l 101 (342)
T smart00330 22 TPSHGSADFKFKDYCPEVFRNLRELFGIDPADYLRSLCRSPPLELSSGGKSGSFFYLSLDDRFIIKTVSKSEIKSLLPML 101 (342)
T ss_pred cCCCCCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhCCCCccccCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHH
Confidence 356668899999999999999999999999999999999986 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCceeeeeeeEEEEEeecCCCCceeeEEEEEEeccCC-CCCcceeEEecCccCCCccCC-CCCCCc
Q 000391 1461 LHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTF-ERNITRQYDLKGALHARYNTT-VDGSGD 1538 (1582)
Q Consensus 1461 p~Yf~y~~~~~~~n~~TlL~Ki~Gly~i~~~~~~~g~~~k~~~iVMeNlf~-~~~i~~~yDLKGS~~~R~~~~-~~~~~~ 1538 (1582)
|.||+||.. ||+|||+||||+|+|++++ |+..++|||||+|||+ +..|+++||||||+++|.+.. ......
T Consensus 102 p~Y~~~~~~----n~~SlL~ki~Gly~i~~~~---~~~~~~~fiVM~NlF~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~ 174 (342)
T smart00330 102 PNYYEHIVQ----NPNTLLPKFFGLYRVKVKG---GTEKKIYFLVMENLFYSDLKVHRKYDLKGSTRGREADKKKVKELP 174 (342)
T ss_pred HHHHHHHHh----CCCcchhhhcEEEEEEECC---CcceeEEEEEEecCCCCCCceeEEEECCCCCCCCCcCccccCCCC
Confidence 999999998 8999999999999998753 4456899999999999 458999999999999999975 335678
Q ss_pred ceeccchhhccCCCCeeeCHHHHHHHHHHHHHHHHHHhhCCCC
Q 000391 1539 VLLDQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNVSGNL 1581 (1582)
Q Consensus 1539 vLkD~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nim 1581 (1582)
||||.||++. .+.||+|+++.|..|+.||++||+||+++|||
T Consensus 175 vlkD~df~~~-~~~~i~l~~~~k~~l~~ql~~D~~FL~~~~im 216 (342)
T smart00330 175 VLKDLDLVEM-WNQPIYVDPLAKKALLKQIKRDCEFLESLKIM 216 (342)
T ss_pred cccccchhhc-cCCeEEECHHHHHHHHHHHHHHHHHHHHccch
Confidence 9999999997 56799999999999999999999999999998
No 6
>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-41 Score=395.37 Aligned_cols=185 Identities=32% Similarity=0.468 Sum_probs=170.4
Q ss_pred CCcEEEEEcCHHHHHHHHHHcCCChHHHHHHhccccccc--cCCCCccceEEEecCCcEEEEeccHHHHHHHHHHHHHHH
Q 000391 1387 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNWD--AKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYF 1464 (1582)
Q Consensus 1387 ~~~~~~k~y~p~~F~~LR~~~gi~~~~yi~SLs~~~~~~--~sgGKSGs~F~~T~D~rfIIKtis~~E~~~fl~~lp~Yf 1464 (1582)
...|+||+|||.+||.||++|||+++||+.||++..... +++|||||+||.|.|+|||||||.++|++.|+++||.||
T Consensus 95 ~~~Fk~KdYcP~vFR~lRelFgId~~DYl~Slc~~~~l~e~sspGksGS~Fy~S~DdrFiIKTv~~~E~~~l~~mLp~Yy 174 (420)
T KOG0229|consen 95 SSDFKFKDYCPMVFRNLRELFGIDPADYLLSLCGNPPLRELSSPGKSGSFFYLSYDDRFIIKTVRKSEVKVLLKMLPGYY 174 (420)
T ss_pred ccccchhhcChHHHHHHHHHhCCChHHHHHHHhcchhhhhccCCCCccceEEEecCceEEEEeccHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999887664 777999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCceeeeeeeEEEEEeecCCCCceeeEEEEEEeccCCCC-CcceeEEecCccCCCccCCCC--CCCccee
Q 000391 1465 KYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQYDLKGALHARYNTTVD--GSGDVLL 1541 (1582)
Q Consensus 1465 ~y~~~~~~~n~~TlL~Ki~Gly~i~~~~~~~g~~~k~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~--~~~~vLk 1541 (1582)
+|+.++ ++.|||+||||+|+|+.. +|+ ++|||||+|||..+ .||++||||||+.+|.+.+.+ +..++||
T Consensus 175 ~~v~~~---~~~TLl~kf~Gly~vk~~---gg~--k~yfvVM~Nlf~~~~~iH~kyDLKGSt~~R~askke~~k~~pTlK 246 (420)
T KOG0229|consen 175 QHVVEQ---NNRTLLPKFFGLYRVKPD---GGK--KIYFVVMNNLFPSRLKVHRKYDLKGSTVGREASKKEKIKELPTLK 246 (420)
T ss_pred HHHHcc---CCceeehhhceeEEEeeC---CCc--eEEEEEecccCCCccceeEEeecCCCcccccccchhhccCCCccc
Confidence 999995 777999999999999864 454 68999999999998 999999999999999997633 4678999
Q ss_pred ccchhhccCCCCeeeCHHHHHHHHHHHHHHHHHHhhCCCC
Q 000391 1542 DQNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNVSGNL 1581 (1582)
Q Consensus 1542 D~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nim 1581 (1582)
|+||++.-+ .|+|++..++.|++||++||+||++++||
T Consensus 247 DlDf~~~~~--~~~l~~~~~~~l~~ql~~Dce~Le~~~IM 284 (420)
T KOG0229|consen 247 DLDFLNEGQ--KLYLGKEAKKALLKQLKRDCEFLESLKIM 284 (420)
T ss_pred cchhhccCc--eEecCHHHHHHHHHHHHHHHHHHHHhcch
Confidence 999999544 49999999999999999999999999998
No 7
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.3e-41 Score=417.58 Aligned_cols=257 Identities=24% Similarity=0.417 Sum_probs=240.4
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCC-CCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVD-GKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~-g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~ 349 (1582)
..|++.+.+++++|....|.+.|+.|+++|+..+.++... ...+|+++||+|+|++||++.||++|+|++|+|+++|++
T Consensus 145 ~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~ 224 (525)
T TIGR02344 145 AAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPK 224 (525)
T ss_pred HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCC
Confidence 3477788888999999999999999999999999886422 347899889999999999999999999999999999999
Q ss_pred CCccccCCcEEEEEecCCccccc---------cchhhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcC
Q 000391 350 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1582)
Q Consensus 350 Mp~~i~nPRILLL~~~LEy~r~e---------lsSle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g 419 (1582)
|+++++||||||++++|+|++++ ..++++ +++|++|++++|++|++.||+||+++++|+++|++||.++|
T Consensus 225 m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~ 304 (525)
T TIGR02344 225 MRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKAN 304 (525)
T ss_pred CccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC
Confidence 99999999999999999999876 245788 89999999999999999999999999999999999999999
Q ss_pred CeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccc-cceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEE
Q 000391 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKH-CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVL 497 (1582)
Q Consensus 420 I~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~-C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTIL 497 (1582)
|++++++++.+|+|||++|||+++++++ +++..||+ |+.|++++++ .++|+||+||..+.+|||+
T Consensus 305 I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig-------------~~~~~~~~g~~~~~~~TIl 371 (525)
T TIGR02344 305 ISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIG-------------DEYFTFFTECKDPKACTIL 371 (525)
T ss_pred ceEEecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEEC-------------CeEEEEEEcCCCCCEEEEE
Confidence 9999999999999999999999999999 99999999 9999999974 3689999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 498 LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 498 LRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
|||++..+|+|+||+++||+++++++++++.+|+||||+|...
T Consensus 372 LrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~l 414 (525)
T TIGR02344 372 LRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAV 414 (525)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHH
Confidence 9999999999999999999999999999999999999999863
No 8
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=2.6e-38 Score=394.71 Aligned_cols=256 Identities=25% Similarity=0.367 Sum_probs=237.8
Q ss_pred HHHHHhhcccCCCCCc-chHHHHHHHHHHHHHHhcCCCCCCC-CccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCC
Q 000391 271 SQLLKSVGVVSSGKDG-ESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK 348 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~-~~w~~~ls~L~~~Av~~V~pd~~~g-~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk 348 (1582)
..|++.+.+++++|.. +.|.+.|++|+++|+..+.+...+| -.+|+ ++|+|+|++||++.||++++|++|++++.|+
T Consensus 145 ~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~ 223 (519)
T TIGR02339 145 DLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDL-DNIKIEKKTGGSIDDTELVEGIVVDKEPVHP 223 (519)
T ss_pred HHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCH-HHeEEEEccCcChhcceeEeeEEEecCCCCC
Confidence 5578889999999988 7999999999999999997532123 25788 5899999999999999999999999999999
Q ss_pred CCCccccCCcEEEEEecCCccccc------cc---hhhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHc
Q 000391 349 HMPTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 418 (1582)
Q Consensus 349 ~Mp~~i~nPRILLL~~~LEy~r~e------ls---Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~ 418 (1582)
+|+++++||||+|++++|||++++ +. ++.+ +++|++|++++|++|++.||+||+++++|++.|++||.++
T Consensus 224 ~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~ 303 (519)
T TIGR02339 224 GMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA 303 (519)
T ss_pred CCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC
Confidence 999999999999999999999886 33 4777 8999999999999999999999999999999999999999
Q ss_pred CCeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEE
Q 000391 419 GMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVL 497 (1582)
Q Consensus 419 gI~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTIL 497 (1582)
||++++++++.+|+|||++|||+++++++ +.+..||+|+.|++++++ .++|++|+||..+.+|||+
T Consensus 304 gI~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~TI~ 370 (519)
T TIGR02339 304 GILAVRRVKKSDIEKLARATGAKIVSSIKEITESDLGYAGLVEERKVG-------------DDKMTFVEGCKNPKAVTIL 370 (519)
T ss_pred CCEEEecCCHHHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEEEC-------------CeEEEEEEcCCCCCEEEEE
Confidence 99999999999999999999999999999 998999999999999975 3689999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 498 LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 498 LRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
|||++..+|+|+||+++||++++++++.++++|+||||+|...
T Consensus 371 lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~l 413 (519)
T TIGR02339 371 LRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIEL 413 (519)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHH
Confidence 9999999999999999999999999999999999999999863
No 9
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=3.4e-39 Score=404.85 Aligned_cols=181 Identities=25% Similarity=0.371 Sum_probs=164.9
Q ss_pred CCcEEEEEcCHHHHHHHHHHcCCChHHHHHHhcccccc--ccCCCCccceEEEecCCcEEEEeccHHHHHHHHHHHHHHH
Q 000391 1387 KGKYSVKCLYANQFRDLRSRCCPSELAYIDSLSRCRNW--DAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYF 1464 (1582)
Q Consensus 1387 ~~~~~~k~y~p~~F~~LR~~~gi~~~~yi~SLs~~~~~--~~sgGKSGs~F~~T~D~rfIIKtis~~E~~~fl~~lp~Yf 1464 (1582)
...|+||+|+|.+|+.||++|||++++|+.||+.+..| .+++|||||+||+|.|+|||||||++.|+++|++|||+||
T Consensus 401 ~~~fkfkdY~P~vFr~LR~~fgId~~dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiIKTI~k~E~~~l~~iLp~Y~ 480 (765)
T PLN03185 401 SEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRKSEVKVLLRMLPDYH 480 (765)
T ss_pred cCceEEEEECHHHHHHHHHHhCCCHHHHHHhccCCccchhccCCCCcCCeEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999876554 5889999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCceeeeeeeEEEEEeecCCCCceeeEEEEEEeccCCCC-CcceeEEecCccCCCccCCC-CCCCcceec
Q 000391 1465 KYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLTFER-NITRQYDLKGALHARYNTTV-DGSGDVLLD 1542 (1582)
Q Consensus 1465 ~y~~~~~~~n~~TlL~Ki~Gly~i~~~~~~~g~~~k~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~-~~~~~vLkD 1542 (1582)
+||.. ||+|||+||||||+|++. +|+ +++||||+|||+++ .|+++||||||+++|.+... .+...||||
T Consensus 481 ~hv~~----n~~TLL~kf~Gl~~i~~~---~g~--k~~fvVM~NlF~~~~~I~~~yDLKGSt~~R~~~k~~~~~~~tlKD 551 (765)
T PLN03185 481 HHVKT----YENTLITKFFGLHRIKPS---SGQ--KFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADKVEIDENTTLKD 551 (765)
T ss_pred HHHhh----CCCcchhhheEEEEEEeC---CCc--EEEEEEEecCCCCCCccceEEECCCCCCCCCCccccccCCCeeee
Confidence 99988 899999999999999754 343 68999999999986 89999999999999998542 245789999
Q ss_pred cchhhccCCCCeeeCHHHHHHHHHHHHHHHHHHhhCCCC
Q 000391 1543 QNFVNDMNSSPLYVSNTAKRILQRAVWNDTTFLNVSGNL 1581 (1582)
Q Consensus 1543 ~nf~~~~~~~pi~l~~~~k~~L~~~l~~Dt~FL~~~nim 1581 (1582)
+||.. +|+|.++.|+.|++||++||+||+++|||
T Consensus 552 lD~~~-----~~~l~~~~k~~l~~qL~~D~~FL~~~~IM 585 (765)
T PLN03185 552 LDLNY-----SFYLEPSWRDALLRQIEIDSKFLEAQRIM 585 (765)
T ss_pred cCcCc-----eEeeCHHHHHHHHHHHHHHHHHHhHCcCe
Confidence 99832 59999999999999999999999999998
No 10
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-39 Score=370.47 Aligned_cols=254 Identities=23% Similarity=0.444 Sum_probs=239.6
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~M 350 (1582)
.+++...+.+..+|....|.+.++.|+++|+..|..+ .|..+|+..|+||.|||||.+.+|++++||.+.|.+.|++|
T Consensus 148 ~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~--~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkm 225 (527)
T KOG0364|consen 148 AKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVE--NGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKM 225 (527)
T ss_pred HHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhc--cCceechhhhccccccCcccccccceecceeeccccCcHHH
Confidence 4477777788888999999999999999999999876 45579999999999999999999999999999999999999
Q ss_pred CccccCCcEEEEEecCCccccc------c---chhhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCC
Q 000391 351 PTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 420 (1582)
Q Consensus 351 p~~i~nPRILLL~~~LEy~r~e------l---sSle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI 420 (1582)
.+.|+||||.||+|||||.+-+ + .+|.. ++-|++|++.++..|+.++||||++||+||++|++||.++||
T Consensus 226 rr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~i 305 (527)
T KOG0364|consen 226 RRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANI 305 (527)
T ss_pred HHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCc
Confidence 9999999999999999998765 2 35788 999999999999999999999999999999999999999999
Q ss_pred eEeccCCHHHHHHHHHHhCCceecccC-CCCCCccc-cceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000391 421 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKH-CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498 (1582)
Q Consensus 421 ~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~-C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTILL 498 (1582)
++++++++.+..||||++||.|++..+ |.....|+ |+.|+++++++ ..|.||..|..|+.|||||
T Consensus 306 T~~rr~rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gd-------------eyf~f~~~Ck~pkaCtill 372 (527)
T KOG0364|consen 306 TAIRRLRKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGD-------------EYFTFFTDCKEPKACTILL 372 (527)
T ss_pred hhhhhhhccccchhhhhcCceeccChhhCchhccCcccceeeeeccCc-------------hhhhhhhhcCCCcceEEEe
Confidence 999999999999999999999999999 99999995 99999999875 4899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCccccc
Q 000391 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1582)
Q Consensus 499 RG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~ 539 (1582)
||++.++|+|++|-++||+.+++|+..++++++||||+|..
T Consensus 373 rg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMA 413 (527)
T KOG0364|consen 373 RGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMA 413 (527)
T ss_pred ccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHH
Confidence 99999999999999999999999999999999999999985
No 11
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.8e-38 Score=392.38 Aligned_cols=256 Identities=23% Similarity=0.367 Sum_probs=238.3
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~M 350 (1582)
..|++.+.+++++|....|.+.|++|+++|+..+.++......+|+ ++|+|+|++||++.||++++|+||++++.|+.|
T Consensus 144 ~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m 222 (517)
T cd03343 144 DTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDL-DNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGM 222 (517)
T ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccH-HHeeEEeecCcCHHHcceeeeEEEeccCCCCCC
Confidence 4577888999999999999999999999999999764222236888 589999999999999999999999999999999
Q ss_pred CccccCCcEEEEEecCCccccc------cc---hhhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCC
Q 000391 351 PTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 420 (1582)
Q Consensus 351 p~~i~nPRILLL~~~LEy~r~e------ls---Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI 420 (1582)
++.++||||+|++++|||++.+ +. ++++ +++|++|++++|++|+..||+|||++++|++.|++||.++||
T Consensus 223 ~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI 302 (517)
T cd03343 223 PKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGI 302 (517)
T ss_pred ccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCc
Confidence 9999999999999999999876 33 4777 899999999999999999999999999999999999999999
Q ss_pred eEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEe
Q 000391 421 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLK 499 (1582)
Q Consensus 421 ~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTILLR 499 (1582)
++++++++.+|+|||++|||+++++++ +++..||+|+.|++++++ .++|++|+||..+.+|||+||
T Consensus 303 ~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~TI~lr 369 (517)
T cd03343 303 LAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVG-------------DDKMVFVEGCKNPKAVTILLR 369 (517)
T ss_pred EEEEeCCHHHHHHHHHHhCCEEecchhhCChhhCCccceEEEEEEC-------------CeEEEEEEcCCCCceEEEEEE
Confidence 999999999999999999999999999 999999999999999975 368999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 500 GSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 500 G~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
|++..+|+|+||+++||++++++++.++++|||||++|...
T Consensus 370 G~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~l 410 (517)
T cd03343 370 GGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIEL 410 (517)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHH
Confidence 99999999999999999999999999999999999999863
No 12
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.3e-38 Score=390.60 Aligned_cols=256 Identities=19% Similarity=0.300 Sum_probs=237.1
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~M 350 (1582)
+.|++.+.+++++|....|.+.|+.++++|+..+... ++..+|+ ++|+|+|++||++.||++++|++|+++++|+.|
T Consensus 154 ~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m 230 (526)
T cd03339 154 EPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADL--ERKDVNF-ELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQM 230 (526)
T ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhc--CCCccch-HHeEEEEecCcCHHHcceeeeEEEecccCCCCC
Confidence 4578889999999999999999999999999998642 1235677 589999999999999999999999999999999
Q ss_pred CccccCCcEEEEEecCCccccc------cc---hhhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCC
Q 000391 351 PTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 420 (1582)
Q Consensus 351 p~~i~nPRILLL~~~LEy~r~e------ls---Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI 420 (1582)
|++++||||+|++++|||++.+ +. +++. +++|++|++.++++|++.|++||+++++|++.|++||.++||
T Consensus 231 ~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I 310 (526)
T cd03339 231 PKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGL 310 (526)
T ss_pred CceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCC
Confidence 9999999999999999998765 23 4677 899999999999999999999999999999999999999999
Q ss_pred eEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEe
Q 000391 421 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLK 499 (1582)
Q Consensus 421 ~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTILLR 499 (1582)
+++++++..+|+|||++|||.++++++ +++..||+|+.|+++.|+. ..++|+||+||+.+.+|||+||
T Consensus 311 ~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~-----------~~~~~~~i~g~~~~~~~TIllr 379 (526)
T cd03339 311 PAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGT-----------TKDKMLVIEGCPNSKAVTIFIR 379 (526)
T ss_pred EEEEeCCHHHHHHHHHHhCCEEecchhhCChhhcccCceEEEEEecC-----------CCcEEEEEECCCCCCEEEEEEE
Confidence 999999999999999999999999999 9999999999999999753 2479999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 500 GSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 500 G~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
|+|..+|+|+||+++||++++++++.++++||||||+|...
T Consensus 380 G~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~l 420 (526)
T cd03339 380 GGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISC 420 (526)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHH
Confidence 99999999999999999999999999999999999999863
No 13
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-36 Score=380.27 Aligned_cols=256 Identities=19% Similarity=0.253 Sum_probs=234.1
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCC-CccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g-~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~ 349 (1582)
..|++.+.+++++|....|.+.|++|+++|+..++.....+ ..+|+ ++|+|++++||++.||++++|+||+++++|++
T Consensus 138 ~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~-~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~ 216 (527)
T cd03335 138 ESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPI-KAVNILKAHGKSAKESYLVNGYALNCTRASQG 216 (527)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCH-HHeEEEEecCcChhhcceeeeEEEecccCCCC
Confidence 34778889999999999999999999999999996421122 24788 58999999999999999999999999999999
Q ss_pred CCccccCCcEEEEEecCCcccccc---------chhhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcC
Q 000391 350 MPTEYKNPRLLLIRGVLGLSSSGL---------SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1582)
Q Consensus 350 Mp~~i~nPRILLL~~~LEy~r~el---------sSle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g 419 (1582)
||++++||||||++++|++.+.++ ..++. .++|+++++.++++|++.|++|||++++|++.|++||.++|
T Consensus 217 m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~ 296 (527)
T cd03335 217 MPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAG 296 (527)
T ss_pred CcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC
Confidence 999999999999999999988762 35777 79999999999999999999999999999999999999999
Q ss_pred CeEeccCCHHHHHHHHHHhCCceecccC-CC------CCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCc
Q 000391 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LT------SQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRL 492 (1582)
Q Consensus 420 I~vv~nVK~~~LeRIAR~TGA~IisSid-L~------~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~ 492 (1582)
|++++++++.+|+|||++|||+|+++++ ++ +..||+|+.|++++++. ++|++|+||....
T Consensus 297 I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~g~~~~~ 363 (527)
T cd03335 297 AMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGD-------------DELILIKGTKKRS 363 (527)
T ss_pred cEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECC-------------eEEEEEEcCCCCC
Confidence 9999999999999999999999999986 53 34799999999999753 6899999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 493 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 493 gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
+|||+|||+|..+|+|+||+++||++++++++.++++|+|||++|...
T Consensus 364 ~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~l 411 (527)
T cd03335 364 SASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETAL 411 (527)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999863
No 14
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-36 Score=377.03 Aligned_cols=249 Identities=23% Similarity=0.353 Sum_probs=231.8
Q ss_pred HHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCC---
Q 000391 272 QLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK--- 348 (1582)
Q Consensus 272 qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk--- 348 (1582)
.|++.+.+++++|....|.+.|++|+++|+..+.+ ..|+ ++|+|++++||++.||++++|+||++++++.
T Consensus 150 ~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~ 222 (522)
T cd03340 150 LLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDD------DLDL-DMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFE 222 (522)
T ss_pred HHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcc------cCCh-hHheEeeecCCChhhceeeeeEEEecccCccccc
Confidence 37788899999999999999999999999999965 2466 6899999999999999999999999998865
Q ss_pred CCCccccCCcEEEEEecCCccccc------cch---hhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHc
Q 000391 349 HMPTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK 418 (1582)
Q Consensus 349 ~Mp~~i~nPRILLL~~~LEy~r~e------lsS---le~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~ 418 (1582)
.||++++||||||++++|||.+.+ +.+ ++. +++|++++++++++|++.|++||+++++|++.|++||.++
T Consensus 223 ~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~ 302 (522)
T cd03340 223 QQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADR 302 (522)
T ss_pred cCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHC
Confidence 479999999999999999998764 333 666 7999999999999999999999999999999999999999
Q ss_pred CCeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEE
Q 000391 419 GMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVL 497 (1582)
Q Consensus 419 gI~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTIL 497 (1582)
||+++.+|++.+|+|||++|||+|+++++ +++..||+|+.|++++++ .++|++|+||+.+.+||||
T Consensus 303 ~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~TIl 369 (522)
T cd03340 303 DIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVG-------------GERYNIFTGCPKAKTCTII 369 (522)
T ss_pred CcEEEEeCCHHHHHHHHHHHCCEEeeccccCCccccccceEEEEEEEC-------------CEEEEEEECCCCCceEEEE
Confidence 99999999999999999999999999999 999999999999998873 3689999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 498 LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 498 LRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
|||++..+|+|+||+++||++++++++.++.+|+|||++|...
T Consensus 370 lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~l 412 (522)
T cd03340 370 LRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 412 (522)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHH
Confidence 9999999999999999999999999999999999999999863
No 15
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=3.7e-36 Score=375.98 Aligned_cols=249 Identities=20% Similarity=0.265 Sum_probs=231.9
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~M 350 (1582)
+.|++.+.+++++|....|.+.|++|+++|+..+.. .+|+ ++|+|++++||++.||++++|+|+++++.| .|
T Consensus 159 ~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~------~~~~-~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~ 230 (533)
T PTZ00212 159 EDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKG------SGNL-DYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQ 230 (533)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhc------cCCc-cceEEEEecCcCccccEEEEeEEEecccCC-CC
Confidence 568888999999999999999999999999999864 2566 589999999999999999999999999987 58
Q ss_pred CccccCCcEEEEEecCCcccccc-------c---hhhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcC
Q 000391 351 PTEYKNPRLLLIRGVLGLSSSGL-------S---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1582)
Q Consensus 351 p~~i~nPRILLL~~~LEy~r~el-------s---Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g 419 (1582)
|++++||||||++++|||++.+. . ++.. .++|++++++++.+|++.+++||+++++|++.|++||.++|
T Consensus 231 ~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~ 310 (533)
T PTZ00212 231 PKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAG 310 (533)
T ss_pred CccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC
Confidence 99999999999999999998762 3 3556 78999999999999999999999999999999999999999
Q ss_pred CeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000391 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498 (1582)
Q Consensus 420 I~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTILL 498 (1582)
|++|+++++.+|+|||++|||.++++++ +++.+||+|+.|+++.++ .++|++|+||....+|||+|
T Consensus 311 I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~TI~l 377 (533)
T PTZ00212 311 IMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIG-------------EDKLIRFSGCAKGEACTIVL 377 (533)
T ss_pred CEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEEC-------------CeEEEEEEccCCCCEEEEEE
Confidence 9999999999999999999999999999 999999999999988764 36899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 499 RG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
||+|..+|+|+||.++||++++++++.++++|+||||+|...
T Consensus 378 rG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~l 419 (533)
T PTZ00212 378 RGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLM 419 (533)
T ss_pred ECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHH
Confidence 999999999999999999999999999999999999999863
No 16
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.2e-36 Score=375.15 Aligned_cols=256 Identities=19% Similarity=0.291 Sum_probs=236.8
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~M 350 (1582)
+.|++.+.+++++|....|.+.|+.|+++|+..+... +...+|+ ++|+|+|++||++.||++++|++|++++.|..|
T Consensus 158 ~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m 234 (532)
T TIGR02343 158 EPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADM--ERRDVDF-DLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQM 234 (532)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhc--CCCcCCH-HHeeEEEecCCCcccceeEeeEEEecCcCCCCC
Confidence 4578888999999998899999999999999998542 1235788 589999999999999999999999999999999
Q ss_pred CccccCCcEEEEEecCCccccc------cc---hhhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCC
Q 000391 351 PTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 420 (1582)
Q Consensus 351 p~~i~nPRILLL~~~LEy~r~e------ls---Sle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI 420 (1582)
|+.++||||+|++++||+++.+ +. .++. +++|+++++.++++|++.|++||+++++|++.|++||.++||
T Consensus 235 ~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i 314 (532)
T TIGR02343 235 PKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDL 314 (532)
T ss_pred CeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCc
Confidence 9999999999999999999875 33 3566 899999999999999999999999999999999999999999
Q ss_pred eEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEe
Q 000391 421 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLK 499 (1582)
Q Consensus 421 ~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTILLR 499 (1582)
.++++++..+|+|||++|||.++++++ +++..||+|+.|+++.++. ..+++++|+||..+..|||+||
T Consensus 315 ~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~-----------~~~~~~~i~~~~~~~~~TIllr 383 (532)
T TIGR02343 315 PAVRWVGGHELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGT-----------TKDRMLVIEQCKNSKAVTIFIR 383 (532)
T ss_pred EEEEcCCHHHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecC-----------CcceEEEEECCCCCCEEEEEEE
Confidence 999999999999999999999999999 9999999999999999853 1358999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 500 GSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 500 G~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
|+|..+|+|+||+++||++++++++.++.+|+||||+|...
T Consensus 384 G~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~l 424 (532)
T TIGR02343 384 GGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISC 424 (532)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHH
Confidence 99999999999999999999999999999999999999863
No 17
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.6e-36 Score=371.95 Aligned_cols=255 Identities=19% Similarity=0.262 Sum_probs=235.5
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC-
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH- 349 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~- 349 (1582)
+.|++.+.+++++|....|.+.|+.|+++|+..+.++. .++.+|+ +.|+|.++.||++.||++++|++|++++.|+.
T Consensus 137 ~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~-~~~~~d~-~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~ 214 (515)
T cd03338 137 ESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPA-TATNVDL-KDIRIVKKLGGTIEDTELVDGLVFTQKASKKAG 214 (515)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhccc-ccCcCCH-HHeEEEEecCCChhhceeeeeEEEeccccCcCC
Confidence 35778889999999999999999999999999998643 1246888 47999999999999999999999999999986
Q ss_pred CCccccCCcEEEEEecCCccccc------c---chhhh-HHHHHHHHHHHHhhhhccCCeEEEecccc-----cHHHHHH
Q 000391 350 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTV-----SRDIQES 414 (1582)
Q Consensus 350 Mp~~i~nPRILLL~~~LEy~r~e------l---sSle~-i~qE~eyL~~~V~rI~~~~pnVVLveksV-----s~~Al~~ 414 (1582)
||+.++||||++|+|+|||.+.+ + .+++. +++|+++++.++++|++.|++|||++++| +++|++|
T Consensus 215 ~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~ 294 (515)
T cd03338 215 GPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHF 294 (515)
T ss_pred CCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHH
Confidence 59999999999999999998765 2 25777 89999999999999999999999999987 9999999
Q ss_pred HHHcCCeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCC-Cc
Q 000391 415 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT-RL 492 (1582)
Q Consensus 415 L~~~gI~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~-~~ 492 (1582)
|.++||++++++++.+|+|||++|||+++++++ ++...||+|+.|++++++ .++|++|+||+. ..
T Consensus 295 l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g-------------~~~~~~i~~~~~~~~ 361 (515)
T cd03338 295 LAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLG-------------DGKIVKITGVKNPGK 361 (515)
T ss_pred HHHCCceEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEEC-------------CeEEEEEEecCCCCc
Confidence 999999999999999999999999999999999 999999999999999974 268999999997 69
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 493 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 493 gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
+|||+|||+|..+++|+||+++||++++++++.++++|+|||++|...
T Consensus 362 ~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~l 409 (515)
T cd03338 362 TVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEI 409 (515)
T ss_pred eEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHH
Confidence 999999999999999999999999999999999999999999999863
No 18
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=1.1e-35 Score=329.96 Aligned_cols=206 Identities=31% Similarity=0.423 Sum_probs=194.0
Q ss_pred HHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCCC
Q 000391 272 QLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMP 351 (1582)
Q Consensus 272 qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~Mp 351 (1582)
.|++.+.+++++|. ..|.+.|++|+++|+..+.++. + ++..+||+|++++||++.||++++|++|.|+++|+.||
T Consensus 3 ~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~--~--~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~ 77 (209)
T cd03333 3 LLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDN--R--MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMP 77 (209)
T ss_pred HHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccC--C--CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCC
Confidence 46677888999999 9999999999999999998743 2 45557999999999999999999999999999999999
Q ss_pred ccccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccCCHHHH
Q 000391 352 TEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRL 431 (1582)
Q Consensus 352 ~~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nVK~~~L 431 (1582)
++++||||||++++||| |||++++|++.|+++|.++||++++++++.+|
T Consensus 78 ~~~~n~~Ill~~~~le~-------------------------------vii~~~~I~~~al~~l~~~~I~~v~~~~~~~l 126 (209)
T cd03333 78 KRLENAKILLLDCPLEY-------------------------------VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDL 126 (209)
T ss_pred eEcCCCcEEEEeCCeeE-------------------------------EEEecCcccHHHHHHHHHCCCEEEEeCCHHHH
Confidence 99999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHHH
Q 000391 432 ERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIK 510 (1582)
Q Consensus 432 eRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~evK 510 (1582)
+|||++|||+++++++ ++++.||+|+.|++++++ .++|++|+||....+|||+|||++..+|+|+|
T Consensus 127 ~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~-------------~~~~~~~~~~~~~~~~tIllrG~t~~~l~e~k 193 (209)
T cd03333 127 ERIARATGATIVSSLEDLTPEDLGTAELVEETKIG-------------EEKLTFIEGCKGGKAATILLRGATEVELDEVK 193 (209)
T ss_pred HHHHHHHCCEEecccccCChhhceeeeEEEEEEEC-------------CeEEEEEEcCCCCCEEEEEEECCCHhHHHHHH
Confidence 9999999999999999 999999999999999974 37999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 000391 511 SVVQCAVVMAYHLILE 526 (1582)
Q Consensus 511 rvl~dav~v~~~l~lE 526 (1582)
|+++||++++|+++++
T Consensus 194 r~l~dal~~~~~~~~~ 209 (209)
T cd03333 194 RSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999764
No 19
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-35 Score=368.10 Aligned_cols=249 Identities=18% Similarity=0.209 Sum_probs=231.8
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~M 350 (1582)
+.|++.+.+++++|....|.+.|++|+++|+..+.. .+|+ ++|+|++++||++.||++++|+|+++.+.+ .|
T Consensus 147 ~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~ 218 (517)
T cd03336 147 EDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKG------SGNL-DAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQ 218 (517)
T ss_pred HHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhc------cCCc-cceeEEEccCCCccceEEEeeEEEecccCC-CC
Confidence 567888999999999999999999999999999853 3566 589999999999999999999999999876 58
Q ss_pred CccccCCcEEEEEecCCccccc----------cchhhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcC
Q 000391 351 PTEYKNPRLLLIRGVLGLSSSG----------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1582)
Q Consensus 351 p~~i~nPRILLL~~~LEy~r~e----------lsSle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g 419 (1582)
|++++||||+|++++|||++.+ +.++.. .++|++++++++.+|++.|+++|+++++|++.|++||.++|
T Consensus 219 ~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~ 298 (517)
T cd03336 219 PKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAG 298 (517)
T ss_pred CCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC
Confidence 9999999999999999998875 234666 89999999999999999999999999999999999999999
Q ss_pred CeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000391 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498 (1582)
Q Consensus 420 I~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTILL 498 (1582)
|+++++++..+|+|||++|||.++++++ +++.+||+|+.|++..++ .++|++|+||+.+.+|||+|
T Consensus 299 I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~TI~l 365 (517)
T cd03336 299 IMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIG-------------EDKLIRFSGVAAGEACTIVL 365 (517)
T ss_pred cEEEecCCHHHHHHHHHHhCCEEecccCCCCcccccccceEEEEEEC-------------CeEEEEEEccCCCceEEEEE
Confidence 9999999999999999999999999999 999999999999988764 36899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 499 RG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
||+|..+|+|+||+++||++++++++.++++|+||||+|...
T Consensus 366 rG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~l 407 (517)
T cd03336 366 RGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLM 407 (517)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHH
Confidence 999999999999999999999999999999999999999863
No 20
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-35 Score=368.99 Aligned_cols=255 Identities=20% Similarity=0.266 Sum_probs=235.0
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCC-CC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAH-KH 349 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvah-k~ 349 (1582)
.+|++.+.+++++|....|.+.|+.|+++|+..+.++. ..+.+|+ +.|+|+|++||++.||++++|++|.+++.| ++
T Consensus 138 ~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~-~~~~~~~-~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~ 215 (517)
T TIGR02342 138 EILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPE-NDKNVDL-NDIKVVKKLGGTIDDTELIEGLVFTQKASRSAG 215 (517)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccc-cCCccCH-HHeeEEeccCCChhhcEEEeeEEEeccccccCC
Confidence 45788899999999999999999999999999997632 2236888 589999999999999999999999999999 59
Q ss_pred CCccccCCcEEEEEecCCccccc------c---chhhh-HHHHHHHHHHHHhhhhccCCeEEEecccc-----cHHHHHH
Q 000391 350 MPTEYKNPRLLLIRGVLGLSSSG------L---SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTV-----SRDIQES 414 (1582)
Q Consensus 350 Mp~~i~nPRILLL~~~LEy~r~e------l---sSle~-i~qE~eyL~~~V~rI~~~~pnVVLveksV-----s~~Al~~ 414 (1582)
||++++||||++++|+|++.+.+ + .+++. +++|+++++.++++|++.|++||+++++| +++|++|
T Consensus 216 mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~ 295 (517)
T TIGR02342 216 GPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHF 295 (517)
T ss_pred CCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHH
Confidence 99999999999999999998765 2 34678 99999999999999999999999999998 9999999
Q ss_pred HHHcCCeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCC-c
Q 000391 415 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTR-L 492 (1582)
Q Consensus 415 L~~~gI~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~-~ 492 (1582)
|.++||.+++++++.+|+|||++|||+++++++ ++..+||+|+.|++++++ .++|++|++|+.. .
T Consensus 296 l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~-------------~~~~~~i~~~~~~~~ 362 (517)
T TIGR02342 296 LAKMKIMVVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTD-------------GGKIIKITGIQNAGK 362 (517)
T ss_pred HhhCCceEEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEEC-------------CeEEEEEEccCCCCc
Confidence 999999999999999999999999999999999 999999999999987753 2689999999874 8
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 493 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 493 gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
.|||+|||+|+.+++|+||+++||++++++++.++.+||||||+|...
T Consensus 363 ~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~l 410 (517)
T TIGR02342 363 TVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEI 410 (517)
T ss_pred eEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHH
Confidence 999999999999999999999999999999999999999999999863
No 21
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.3e-35 Score=364.70 Aligned_cols=253 Identities=22% Similarity=0.299 Sum_probs=234.0
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~M 350 (1582)
..|++.+.+++++|....|.+.|++|+++|+..+.++ +..+|+ +.|+|+|++||+..||++++|++|.+.+.|+.|
T Consensus 146 ~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~---~~~i~~-~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~ 221 (531)
T TIGR02347 146 ELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKD---GEQIDL-FMVEIMEMKHKSATDTTLIRGLVLDHGARHPDM 221 (531)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhc---CCCCCh-hHeEEEEecCCCccccEEEeeEEEecCcCCCCC
Confidence 4578888999999999999999999999999999763 224777 479999999999999999999999999999999
Q ss_pred CccccCCcEEEEEecCCccccc------cc---hhhh-HHHHHHHHHHHHhhhhccC-------Ce---EEEecccccHH
Q 000391 351 PTEYKNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEKDQLKSVMDMIDMCH-------PN---VVLVEKTVSRD 410 (1582)
Q Consensus 351 p~~i~nPRILLL~~~LEy~r~e------ls---Sle~-i~qE~eyL~~~V~rI~~~~-------pn---VVLveksVs~~ 410 (1582)
|+++.||||+|++++||+.+++ +. .+.. +.+|++|++.++++|+.++ |+ ||+++++|++.
T Consensus 222 ~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~ 301 (531)
T TIGR02347 222 PRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPP 301 (531)
T ss_pred ceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHH
Confidence 9999999999999999999865 22 3667 8999999999999999976 36 99999999999
Q ss_pred HHHHHHHcCCeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCC
Q 000391 411 IQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCP 489 (1582)
Q Consensus 411 Al~~L~~~gI~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~ 489 (1582)
|++||.++||++++++++.+|+|||++|||+++++++ +++..||+|+.|+++.++ .++|++|+||.
T Consensus 302 a~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig-------------~~~~~~i~~~~ 368 (531)
T TIGR02347 302 SLDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIG-------------EEKYTFIEEVK 368 (531)
T ss_pred HHHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEEC-------------CeEEEEEEcCC
Confidence 9999999999999999999999999999999999999 999999999999999874 36899999999
Q ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 490 TRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 490 ~~~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
.+..|||+|||+|..+|+|+||+++||++++++++.++++|+||||+|...
T Consensus 369 ~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~l 419 (531)
T TIGR02347 369 NPKSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAA 419 (531)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999863
No 22
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.9e-35 Score=364.94 Aligned_cols=256 Identities=19% Similarity=0.251 Sum_probs=233.5
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCC-CccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g-~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~ 349 (1582)
..|++.+.+++++|....|.+.|++|+++|+..++.+..+| ..+|+ ++|+|+|++||++.||++++|++|.+...|.+
T Consensus 142 ~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~ 220 (536)
T TIGR02340 142 EALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPI-KAVNILKAHGGSARESYLVKGYALNCTRASQQ 220 (536)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccch-HHeEEEEecCCCccccEEEEEEEEecccCCCC
Confidence 34778889999999999999999999999999996321122 24788 58999999999999999999999999999999
Q ss_pred CCccccCCcEEEEEecCCcccccc---------chhhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcC
Q 000391 350 MPTEYKNPRLLLIRGVLGLSSSGL---------SSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1582)
Q Consensus 350 Mp~~i~nPRILLL~~~LEy~r~el---------sSle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g 419 (1582)
|+++++||||+|++++|++.+.++ ..++. .++|+++++.++++|++.+++||+++++|++.|++||.++|
T Consensus 221 m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~ 300 (536)
T TIGR02340 221 MPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG 300 (536)
T ss_pred CcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC
Confidence 999999999999999999988662 34777 89999999999999999999999999999999999999999
Q ss_pred CeEeccCCHHHHHHHHHHhCCceecccC-C------CCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCc
Q 000391 420 MTLVFDMKLHRLERVARCTGSPILSSGS-L------TSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRL 492 (1582)
Q Consensus 420 I~vv~nVK~~~LeRIAR~TGA~IisSid-L------~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~ 492 (1582)
|++++++++.+|+|||++|||+++++++ + ++..||+|+.|++++++. ++|++|+||..+.
T Consensus 301 I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~ 367 (536)
T TIGR02340 301 AMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIAD-------------DECILIKGTKGRK 367 (536)
T ss_pred cEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECC-------------eEEEEEEcCCCCC
Confidence 9999999999999999999999999985 4 345599999999999853 6899999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 493 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 493 gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
+|||+|||+|+.+++|+||.++||++++++++.++++|+||||+|...
T Consensus 368 ~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~l 415 (536)
T TIGR02340 368 SASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETAL 415 (536)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHH
Confidence 999999999999999999999999999999999999999999999863
No 23
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.5e-35 Score=364.51 Aligned_cols=226 Identities=26% Similarity=0.441 Sum_probs=210.4
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCC-CccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDG-KSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g-~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~ 349 (1582)
..|++.+.+++++|..+.|.+.|++|+++|+..+.++.... ..+|+++||+|++++||++.||++++|+||+|+++|++
T Consensus 145 ~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~ 224 (480)
T cd03337 145 AQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPK 224 (480)
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCC
Confidence 44778888999999999999999999999999998864322 36898889999999999999999999999999999999
Q ss_pred CCccccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccCCHH
Q 000391 350 MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLH 429 (1582)
Q Consensus 350 Mp~~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nVK~~ 429 (1582)
||++++||||||++|+||| ||+++++|++.|++||.++||+++++++++
T Consensus 225 m~~~~~n~kIlll~~~Le~-------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~ 273 (480)
T cd03337 225 MRRRIENPRIVLLDCPLEY-------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKT 273 (480)
T ss_pred CCcEecCCCEEEEecCcce-------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHH
Confidence 9999999999999999998 999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceecccC-CCCCCccc-cceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHH
Q 000391 430 RLERVARCTGSPILSSGS-LTSQKLKH-CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELK 507 (1582)
Q Consensus 430 ~LeRIAR~TGA~IisSid-L~~~~LG~-C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~ 507 (1582)
+|+|||++|||+|+++++ ++++.||+ |+.|+++++. .++|+||+||..+.+|||+|||++..+|+
T Consensus 274 ~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~TIllrG~t~~~l~ 340 (480)
T cd03337 274 DNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIG-------------DEYFTFITECKDPKACTILLRGASKDVLN 340 (480)
T ss_pred HHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeC-------------CeEEEEEEcCCCCCEEEEEEECCCHHHHH
Confidence 999999999999999999 99999999 6677767653 36899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 508 RIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 508 evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
|+||+++||++++++++.++.+|+||||+|...
T Consensus 341 e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~l 373 (480)
T cd03337 341 EVERNLQDAMAVARNIILNPKLVPGGGATEMAV 373 (480)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHH
Confidence 999999999999999999999999999999863
No 24
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.6e-35 Score=365.45 Aligned_cols=251 Identities=21% Similarity=0.325 Sum_probs=232.5
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCC--
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK-- 348 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk-- 348 (1582)
+.|++.+.+++++|....+.+.|++|+++|+..+.++ .+|+ ++|+|+++.||++.||++++|+||++++++.
T Consensus 149 ~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~-----~~~~-~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~ 222 (522)
T TIGR02345 149 EVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDID-----DLDL-KLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGF 222 (522)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhc-----cCCh-hHheEEeecCCCHHhcceecceEEecccCcccc
Confidence 4578889999999999999999999999999999753 4777 5899999999999999999999999998865
Q ss_pred -CCCccccCCcEEEEEecCCccccc---------cchhhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHH
Q 000391 349 -HMPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILE 417 (1582)
Q Consensus 349 -~Mp~~i~nPRILLL~~~LEy~r~e---------lsSle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~ 417 (1582)
.||++++||||+|++++||+.+.+ +..++. ++.|++++++++++|+++|++||+|+++|++.+++||.+
T Consensus 223 ~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~ 302 (522)
T TIGR02345 223 EQQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFAD 302 (522)
T ss_pred ccCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHH
Confidence 469999999999999999998765 223666 799999999999999999999999999999999999999
Q ss_pred cCCeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEE
Q 000391 418 KGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTV 496 (1582)
Q Consensus 418 ~gI~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTI 496 (1582)
+||+++.+|+..+|+|||++|||+|+++++ +++..||+|+.|+++++. .++|++|+||+.+.+|||
T Consensus 303 ~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~-------------~~r~~~~~g~~~~~~~TI 369 (522)
T TIGR02345 303 HNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIG-------------SERYNYFTGCPHAKTCTI 369 (522)
T ss_pred CCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEEC-------------CeEEEEEEcCCCCceEEE
Confidence 999999999999999999999999999999 999999999999988864 379999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 497 LLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 497 LLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
+|||+|+.+|+|+||+++||++++++++.++.+|+|||++|...
T Consensus 370 ~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~l 413 (522)
T TIGR02345 370 ILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMEL 413 (522)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHH
Confidence 99999999999999999999999999999999999999999863
No 25
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-35 Score=332.25 Aligned_cols=250 Identities=21% Similarity=0.349 Sum_probs=231.5
Q ss_pred HHHH-HhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCC-
Q 000391 271 SQLL-KSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHK- 348 (1582)
Q Consensus 271 ~qLL-~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk- 348 (1582)
+.|| +.+.|+++||.+....++|++++++|+..+.. ..|. +.|-||||+||++.||.+|+||.|+|.+.+-
T Consensus 152 r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~------~l~~-~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAG 224 (543)
T KOG0361|consen 152 RELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDN------DLDL-NMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAG 224 (543)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcc------ccch-hhcceeecCCCccchhhhccceeeeehccccc
Confidence 3444 77889999999999999999999999999853 2445 6899999999999999999999999998765
Q ss_pred --CCCccccCCcEEEEEecCCccccc---------cchhhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHH
Q 000391 349 --HMPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESIL 416 (1582)
Q Consensus 349 --~Mp~~i~nPRILLL~~~LEy~r~e---------lsSle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~ 416 (1582)
..|+++.|||||+|+..||....+ +..++. +..|+..|...+++|...|.||||..-.|.++|.+||.
T Consensus 225 fEqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFA 304 (543)
T KOG0361|consen 225 FEQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFA 304 (543)
T ss_pred hhhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhh
Confidence 469999999999999999986432 456888 99999999999999999999999999999999999999
Q ss_pred HcCCeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEE
Q 000391 417 EKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCT 495 (1582)
Q Consensus 417 ~~gI~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcT 495 (1582)
+++|.++.+|..++|.|+..++|+.|.++.. +.+..||+|+.|+.++++. ..|-+|+||++...||
T Consensus 305 drdiFCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~-------------eRyN~Fegcp~aktcT 371 (543)
T KOG0361|consen 305 DRDIFCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGG-------------ERYNLFEGCPKAKTCT 371 (543)
T ss_pred ccCceecCcCCHHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcc-------------hhhhhhcCCCccceeE
Confidence 9999999999999999999999999999998 9999999999999998753 5899999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 496 VLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 496 ILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
++|||+-++.++|++|++|||+++++++++..++++||||++++.
T Consensus 372 liLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMEl 416 (543)
T KOG0361|consen 372 LILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMEL 416 (543)
T ss_pred EEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehH
Confidence 999999999999999999999999999999999999999999974
No 26
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.6e-33 Score=349.17 Aligned_cols=249 Identities=18% Similarity=0.228 Sum_probs=229.7
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~M 350 (1582)
+.|++.+.+++++|....|.+.|+.|+++|+..+... .|+ +.|+|.|++||++.||++++|+|+.+.+.| .|
T Consensus 148 ~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~------~~~-~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~ 219 (519)
T TIGR02341 148 DDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGS------GNL-DAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQ 219 (519)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccC------CCh-hheEEEEccCCCcccceEEeeEEEeccCCC-CC
Confidence 4678889999999999999999999999999998531 255 459999999999999999999999999887 68
Q ss_pred CccccCCcEEEEEecCCccccc-------cch---hhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcC
Q 000391 351 PTEYKNPRLLLIRGVLGLSSSG-------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG 419 (1582)
Q Consensus 351 p~~i~nPRILLL~~~LEy~r~e-------lsS---le~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g 419 (1582)
|++++||||++++++||+.+.+ +.+ +.. .+.|+++++++++.|++.|+++|++++.|++.|++||.++|
T Consensus 220 ~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~ 299 (519)
T TIGR02341 220 PKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAG 299 (519)
T ss_pred ceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCC
Confidence 9999999999999999998755 223 666 78999999999999999999999999999999999999999
Q ss_pred CeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEE
Q 000391 420 MTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLL 498 (1582)
Q Consensus 420 I~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTILL 498 (1582)
|.++++++..+|+|||++|||.++++++ +++..||+|+.|+++.++ .+.|++|+||+.+..|||+|
T Consensus 300 I~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~TIll 366 (519)
T TIGR02341 300 VMAIEHADFEGIERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIG-------------EDKLLKFSGVKLGEACTIVL 366 (519)
T ss_pred cEEEecCCHHHHHHHHHHhCCEEecccccCCccccccCceEEEEEEC-------------CEEEEEEEcCCCCCEEEEEE
Confidence 9999999999999999999999999999 998899999999987764 36899999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 499 RG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
||+|..+|+|+||.++||++++++++.++.+|+||||+|...
T Consensus 367 rG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~l 408 (519)
T TIGR02341 367 RGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLM 408 (519)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHH
Confidence 999999999999999999999999999999999999999863
No 27
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=100.00 E-value=2.7e-34 Score=327.03 Aligned_cols=155 Identities=34% Similarity=0.507 Sum_probs=116.7
Q ss_pred Hhccc--cccccCCCCccceEEEecCCcEEEEeccHHHHHHHHHHHHHHHHHHHhhccCCCCceeeeeeeEEEEEeecCC
Q 000391 1417 SLSRC--RNWDAKGGKSKSFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPK 1494 (1582)
Q Consensus 1417 SLs~~--~~~~~sgGKSGs~F~~T~D~rfIIKtis~~E~~~fl~~lp~Yf~y~~~~~~~n~~TlL~Ki~Gly~i~~~~~~ 1494 (1582)
||+.+ ..|.+++|||||+||+|.|+|||||||+++|++.|+++||+||+||.+ ||.|||+||||+|+|...
T Consensus 2 sl~~~~~~~~~~s~GKSGs~F~~T~D~kfiiKti~~~E~~~l~~~lp~Y~~~~~~----~~~SlL~r~~Gl~~i~~~--- 74 (252)
T PF01504_consen 2 SLCNLSSLSEKSSGGKSGSFFFFTSDGKFIIKTISKSEFKFLLKILPAYFEHMSE----NPNSLLPRFYGLYSIKKS--- 74 (252)
T ss_dssp ---------ES---SSSSS-EEE-TTSSEEEEEE-HHHHHHHHHHHHHHHHHHHH----TTTSSS--EEEEEEE-EE---
T ss_pred CccccccccccCCCCCccCEEEEeCCCCEEEEeCCHHHHHHHHHHHHHHHHHHHh----CcCchHHHHHHHheeccc---
Confidence 66543 568899999999999999999999999999999999999999999999 799999999999999543
Q ss_pred CCceeeEEEEEEeccCCC-CCcceeEEecCccCCCccCCC--CCCCcceeccchhhccCCCCeeeCHHHHHHHHHHHHHH
Q 000391 1495 SGKEMRHDLMVMENLTFE-RNITRQYDLKGALHARYNTTV--DGSGDVLLDQNFVNDMNSSPLYVSNTAKRILQRAVWND 1571 (1582)
Q Consensus 1495 ~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~vLkD~nf~~~~~~~pi~l~~~~k~~L~~~l~~D 1571 (1582)
+| ..+++||||+|||++ ..|+++||||||+++|.+... .....||||.||.+.. .||+|+++.+..|+.||++|
T Consensus 75 ~~-~~~~~fvVM~N~f~~~~~i~~~yDLKGs~~~R~~~~~~~~~~~~~lkD~df~~~~--~~i~l~~~~~~~l~~ql~~D 151 (252)
T PF01504_consen 75 NG-KEKIYFVVMENLFYTPRNIHERYDLKGSTVGRKAKKKDREQTEPVLKDLDFIESK--RKIHLGPEQKEELLKQLERD 151 (252)
T ss_dssp TT--EEEEEEEEE-SS-SSS--SEEEEE--SSSSS-S-CHHHCSSS-EEEHHHHHHTT----SBS-SCHHHHHHHHHHHH
T ss_pred CC-ceeEEEEEECCCccCCcccceEEecCCcccCCCCCccccccccceeecccccccC--cEEEeChHHHHHHHHHHHHH
Confidence 24 457999999999999 599999999999999999752 2357899999999875 57999999999999999999
Q ss_pred HHHHhhCCCC
Q 000391 1572 TTFLNVSGNL 1581 (1582)
Q Consensus 1572 t~FL~~~nim 1581 (1582)
|+||+++|||
T Consensus 152 ~~FL~~~~im 161 (252)
T PF01504_consen 152 TEFLSSHNIM 161 (252)
T ss_dssp HHHHHHTTEE
T ss_pred HHHHHhcccc
Confidence 9999999997
No 28
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-32 Score=338.74 Aligned_cols=234 Identities=20% Similarity=0.292 Sum_probs=214.6
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~M 350 (1582)
++|++.+.+++++|....|.+.|++|+++|+..+.++ ++.+|+ +.|+|++++||+..||++++|++|.+.+.|+.|
T Consensus 142 ~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~---~~~~~~-~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m 217 (484)
T cd03342 142 ELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKP---DEPIDL-HMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDM 217 (484)
T ss_pred HHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhc---CCccCh-hHeEEEEecCCChhhceEEeeEEEecCCCCCCC
Confidence 4578888999999999999999999999999999864 336888 579999999999999999999999999999999
Q ss_pred CccccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccCCHHH
Q 000391 351 PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHR 430 (1582)
Q Consensus 351 p~~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nVK~~~ 430 (1582)
|++++||||+|++++|++.+.++... +. .+||+++++|++.|++||.++||++++++++.+
T Consensus 218 ~~~~~n~~Ill~~~~le~~~~~~~~~--~~-----------------~~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~ 278 (484)
T cd03342 218 PKRVENAYILTCNVSLEYEKTEVNSG--FF-----------------YSVVINQKGIDPPSLDMLAKEGILALRRAKRRN 278 (484)
T ss_pred CccccCceEEEEeCCCCCCccccCcE--EE-----------------EEEEEeCCCccHHHHHHHHHCCCeEEEeCCHHH
Confidence 99999999999999999997762210 00 139999999999999999999999999999999
Q ss_pred HHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHH
Q 000391 431 LERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRI 509 (1582)
Q Consensus 431 LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~ev 509 (1582)
|+|||++|||.++++++ +++..||+|+.|+++.++ .++|+||+||..+..|||+|||+|..+|+|+
T Consensus 279 l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig-------------~~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~ 345 (484)
T cd03342 279 MERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLG-------------EEKYTFIEGVKNPKSCTILIKGPNDHTITQI 345 (484)
T ss_pred HHHHHHHhCCEEecccccCChhhCcccceEEEEEEC-------------CeEEEEEECCCCCcEEEEEEeCCCHHHHHHH
Confidence 99999999999999999 999999999999998874 2689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 510 KSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 510 Krvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
||+++||++++++++.++++||||||+|...
T Consensus 346 er~l~DAl~~vk~~~~~~~~vpGGGa~e~~l 376 (484)
T cd03342 346 KDAIRDGLRAVKNAIEDKCVVPGAGAFEVAL 376 (484)
T ss_pred HHHHHHHHHHHHHHhcCCcEEeCCCHHHHHH
Confidence 9999999999999999999999999999863
No 29
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=7.6e-32 Score=332.84 Aligned_cols=221 Identities=25% Similarity=0.317 Sum_probs=209.6
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~M 350 (1582)
++|++.+.+++++|....|.+.|++++++|+..+.++.. .+|. ++|+|++++||++.||++++|++|.+++.|+.|
T Consensus 137 ~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~---~~~~-~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m 212 (464)
T cd00309 137 EELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENG---DVDL-GVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM 212 (464)
T ss_pred HHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccC---cccc-ceEEEEecCCCCcccceeeeeEEEecCCCCCCC
Confidence 457888999999999999999999999999999987542 4555 689999999999999999999999999999999
Q ss_pred CccccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccCCHHH
Q 000391 351 PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHR 430 (1582)
Q Consensus 351 p~~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nVK~~~ 430 (1582)
++.++||||+|++++|+| ||+++++|++.|+++|.++||++++++++.+
T Consensus 213 ~~~~~n~~Ili~~~~Le~-------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~ 261 (464)
T cd00309 213 PKRLENAKILLLDCKLEY-------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKED 261 (464)
T ss_pred ceeecCceEEEEecCcce-------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHH
Confidence 999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHH
Q 000391 431 LERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRI 509 (1582)
Q Consensus 431 LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~ev 509 (1582)
|+|||++|||+++++++ ++...||+|+.|++++++ .++|++|+||....+|||+|||++..+|+|+
T Consensus 262 L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g-------------~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~ 328 (464)
T cd00309 262 LERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIG-------------DEKYTFIEGCKGGKVATILLRGATEVELDEA 328 (464)
T ss_pred HHHHHHHhCCEEecccccCCcccCccccEEEEEEEc-------------CeeEEEEEecCCCCEEEEEEeCCcHHHHHHH
Confidence 99999999999999999 999999999999999975 3789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCeeecCCCccccc
Q 000391 510 KSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1582)
Q Consensus 510 Krvl~dav~v~~~l~lE~s~l~ggGa~~~~ 539 (1582)
||+++||++++++++.++.||+|||++|..
T Consensus 329 ~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ 358 (464)
T cd00309 329 ERSLHDALCAVRAAVEDGGIVPGGGAAEIE 358 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCcccCCcHHHHH
Confidence 999999999999999999999999999986
No 30
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.98 E-value=1.7e-31 Score=333.69 Aligned_cols=251 Identities=19% Similarity=0.269 Sum_probs=228.4
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~M 350 (1582)
..|++.+.+++++|..+. .+.|++|+++|+..+.++. .+.+|+ +.|+|+|++||+..||++++|++|++... .|
T Consensus 149 ~~l~~i~~tsl~sK~~~~-~~~ls~l~~~Ai~~v~~~~--~~~~~~-~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~ 222 (531)
T TIGR02346 149 KELIKALKASISSKQYGN-EDFLAQLVAKACSTVMPKN--PENFNV-DNIRVSKIMGGSISNSEVLKGMVFNREAE--GS 222 (531)
T ss_pred HHHHHHHHHHhccccCch-HHHHHHHHHHHHHHHhhcC--CCcCCh-hHeeEEEecCCChhhceeEeeeEEeccCC--CC
Confidence 456777888899998877 9999999999999997642 235788 47999999999999999999999999965 58
Q ss_pred CccccCCcEEEEEecCCccccc------cch---hhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCC
Q 000391 351 PTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM 420 (1582)
Q Consensus 351 p~~i~nPRILLL~~~LEy~r~e------lsS---le~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI 420 (1582)
|++++||||+|+++||++.+.+ +.+ +.. .+.|.++++.++++|++.|++||+++++|++.|++||.++||
T Consensus 223 ~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I 302 (531)
T TIGR02346 223 VKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNI 302 (531)
T ss_pred ceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCc
Confidence 9999999999999999998765 344 556 789999999999999999999999999999999999999999
Q ss_pred eEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCC-CCceEEEEE
Q 000391 421 TLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCP-TRLGCTVLL 498 (1582)
Q Consensus 421 ~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~-~~~gcTILL 498 (1582)
.++++++..+|+|||++|||.++++++ ++...||+|+.|++++++. +.|.+|++|. ....|||+|
T Consensus 303 ~av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~i~~~~~~~~~~tI~l 369 (531)
T TIGR02346 303 MVLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGG-------------QKVTVFKQENGDSKISTIIL 369 (531)
T ss_pred EEEecCCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECC-------------EEEEEEEccCCCCCeEEEEE
Confidence 999999999999999999999999999 9888999999999999632 5799999998 578999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 499 RG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
||+|..+++|+||.++||++++++++.++.+|+||||+|...
T Consensus 370 rG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~l 411 (531)
T TIGR02346 370 RGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIEL 411 (531)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHH
Confidence 999999999999999999999999999999999999998763
No 31
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.98 E-value=2.8e-31 Score=329.03 Aligned_cols=249 Identities=27% Similarity=0.426 Sum_probs=231.7
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~M 350 (1582)
+.|++.+.+++.+|....|.+.|++++++|+..+..+ +|+. .++|+++.||+..||++++|+||.+.+++.+|
T Consensus 117 ~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~------~~~~-~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~ 189 (485)
T PF00118_consen 117 ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSN------FDLD-NIKIIKIPGGSISDSELINGIVLDKGFSSPNM 189 (485)
T ss_dssp HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTT------HHGG-GEEEEEEESSSSGGEEEESEEEESSSBSSTTS
T ss_pred hhhhhhhcccccccccccchhhhhhhHHHHHHhhccc------cccc-chhhhhhccccccccccccceeeecccccccc
Confidence 5688889999999999999999999999999555432 6774 59999999999999999999999999999999
Q ss_pred CccccCCcEEEEEecCCcccc-c-------cchhhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCCe
Q 000391 351 PTEYKNPRLLLIRGVLGLSSS-G-------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMT 421 (1582)
Q Consensus 351 p~~i~nPRILLL~~~LEy~r~-e-------lsSle~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~ 421 (1582)
+++++||||++++++|++.+. + ...++. .++|+++++.++++|.+.|++|||++++|++.|+++|.++||.
T Consensus 190 ~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~ 269 (485)
T PF00118_consen 190 PKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGIL 269 (485)
T ss_dssp BSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHE
T ss_pred ccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhhh
Confidence 999999999999999999876 1 345778 8999999999999999999999999999999999999999999
Q ss_pred EeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEE--cCCCCceEEEEE
Q 000391 422 LVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE--GCPTRLGCTVLL 498 (1582)
Q Consensus 422 vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffe--Gc~~~~gcTILL 498 (1582)
++.+|+..+|+|||++|||.++++++ +.+..+|+|+.+++..+. .++|++|+ +|.....|||+|
T Consensus 270 ~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~-------------~~~~~~~~~~~~~~~~~~Till 336 (485)
T PF00118_consen 270 VIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIG-------------NKKYIFIEGIGCLSSKICTILL 336 (485)
T ss_dssp EESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEET-------------SSEEEEEEEHSESSSSEEEEEE
T ss_pred ccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhcccc-------------cccccccccccccccCceEEEe
Confidence 99999999999999999999999999 988889999999888874 37899999 699999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCccccc
Q 000391 499 KGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1582)
Q Consensus 499 RG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~ 539 (1582)
||++..+++++||++++|++++++++.++.+++|||++|..
T Consensus 337 ~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~ 377 (485)
T PF00118_consen 337 RGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELH 377 (485)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhh
Confidence 99999999999999999999999999999999999999975
No 32
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-31 Score=302.31 Aligned_cols=256 Identities=18% Similarity=0.248 Sum_probs=231.9
Q ss_pred HHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000391 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1582)
Q Consensus 270 ~~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~ 349 (1582)
.++|++.+.|+|+||..+++...|++++++|+..|.. ..+....|++ .|||.|-.||.+.|+++|+|+||++.+....
T Consensus 154 re~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~d-p~~~~nvdlk-dIkivkklGgtvdDte~i~glvl~~~~~~~~ 231 (534)
T KOG0358|consen 154 RESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVID-PENATNVDLK-DIKIVKKLGGTVDDTELIKGLVLTQKASKSA 231 (534)
T ss_pred HHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccC-cccccccchh-hhhhHHhhCCccchhhhhcceEEeeecccCC
Confidence 3568999999999999999999999999999998753 2234568885 7999999999999999999999999988777
Q ss_pred CCccccCCcEEEEEecCCccccc---------cchhhh-HHHHHHHHHHHHhhhhccCCeEEEecccc-----cHHHHHH
Q 000391 350 MPTEYKNPRLLLIRGVLGLSSSG---------LSSFKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTV-----SRDIQES 414 (1582)
Q Consensus 350 Mp~~i~nPRILLL~~~LEy~r~e---------lsSle~-i~qE~eyL~~~V~rI~~~~pnVVLveksV-----s~~Al~~ 414 (1582)
-|++++++||.|++|-|..+++. +..++. ++.|+.||.+++++|.+.|+||+|+||+| +++|++|
T Consensus 232 gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHf 311 (534)
T KOG0358|consen 232 GPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHF 311 (534)
T ss_pred CcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHH
Confidence 89999999999999999999875 234888 99999999999999999999999999985 8999999
Q ss_pred HHHcCCeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCC-Cc
Q 000391 415 ILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT-RL 492 (1582)
Q Consensus 415 L~~~gI~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~-~~ 492 (1582)
|.+.+|+||..|.++++|.|++.+|+.++.++| +++++||+++.++...-. ...+++-++|+.+ ..
T Consensus 312 L~klkimvikdieRediefick~l~c~Pia~id~f~~d~Lg~adlveE~~~~------------G~gkivk~tg~~n~g~ 379 (534)
T KOG0358|consen 312 LAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKLGSADLVEETDSS------------GEGKIVKITGIQNAGR 379 (534)
T ss_pred HHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhcCcchhhhhcccC------------CCccEEEEEEeecCCC
Confidence 999999999999999999999999999999999 999999999987654311 1347999999986 68
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCccccc
Q 000391 493 GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1582)
Q Consensus 493 gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~ 539 (1582)
+||||+||++.-+|+|.+|.+|||+||++.|...+.+++|||+-|.+
T Consensus 380 tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEie 426 (534)
T KOG0358|consen 380 TVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIE 426 (534)
T ss_pred ceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchH
Confidence 99999999999999999999999999999999999999999998876
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.97 E-value=2.4e-30 Score=319.67 Aligned_cols=223 Identities=18% Similarity=0.262 Sum_probs=204.8
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~M 350 (1582)
..|.+.+.+++++|... |.+.|++|+++|+..+.++. .+.+|+ +.|+|+|++||+..||++++|+||++++. .|
T Consensus 139 ~~l~~i~~t~l~sk~~~-~~~~l~~l~~~a~~~~~~~~--~~~~~~-~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~ 212 (472)
T cd03341 139 EEVSKALKTAIASKQYG-NEDFLSPLVAEACISVLPEN--IGNFNV-DNIRVVKILGGSLEDSKVVRGMVFKREPE--GS 212 (472)
T ss_pred HHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHhhcc--CCcCCh-hHeEEEEecCCCcccceEEeeEEEccccC--CC
Confidence 44667778888888765 89999999999999998752 236888 48999999999999999999999988765 45
Q ss_pred CccccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccCCHHH
Q 000391 351 PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHR 430 (1582)
Q Consensus 351 p~~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nVK~~~ 430 (1582)
+++++||||+|++++|++ |++||+++++|++.|++||.++||++++++++.+
T Consensus 213 ~~~~~n~~Ili~~~~Le~----------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~ 264 (472)
T cd03341 213 VKRVKKAKVAVFSCPFDI----------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFE 264 (472)
T ss_pred ceeccCCcEEEEeccccC----------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHH
Confidence 689999999999999998 8999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCC-CceEEEEEeCCCHHHHHH
Q 000391 431 LERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT-RLGCTVLLKGSNSDELKR 508 (1582)
Q Consensus 431 LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~-~~gcTILLRG~s~~~L~e 508 (1582)
|+|||++|||+++++++ +++..||+|+.|++++++ .++|++|+||.. ..+|||+|||++..+++|
T Consensus 265 Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig-------------~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E 331 (472)
T cd03341 265 LRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIG-------------DTKVVVFRQNKEDSKIATIVLRGATQNILDD 331 (472)
T ss_pred HHHHHHHhCCEEecccccCCHhHCCCceEEEEEEEC-------------CeeEEEEEccCCCCCeEEEEEECCCHHHHHH
Confidence 99999999999999999 999999999999999974 368999999987 889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 509 IKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 509 vKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
+||.++||++++++++.++++|+|||++|...
T Consensus 332 ~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~l 363 (472)
T cd03341 332 VERAIDDGVNVFKSLTKDGRFVPGAGATEIEL 363 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHH
Confidence 99999999999999999999999999999863
No 34
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.4e-30 Score=297.32 Aligned_cols=263 Identities=19% Similarity=0.231 Sum_probs=235.9
Q ss_pred HHHHHHHHHH-HHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEE
Q 000391 263 SGKFKAIVSQ-LLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVF 341 (1582)
Q Consensus 263 ~~h~~~l~~q-LL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~ 341 (1582)
...+..|-.| |++.+++++++|.+..-.++++.++++|+..++.-..+|...-+-+-|+|.|.+|++..||.+++|..+
T Consensus 140 ~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaL 219 (545)
T KOG0360|consen 140 SKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYAL 219 (545)
T ss_pred eeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceee
Confidence 3344556555 779999999999999999999999999999987655567666666789999999999999999999999
Q ss_pred eeccCCCCCCccccCCcEEEEEecCCccccc------cch---hhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHH
Q 000391 342 KKHAAHKHMPTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDI 411 (1582)
Q Consensus 342 ~Knvahk~Mp~~i~nPRILLL~~~LEy~r~e------lsS---le~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~A 411 (1582)
+..++...||.+|+|+||++|+|.|.-.+.. +.+ ++. -+.|.+..+..+++|++.|+||||++|+|++++
T Consensus 220 nc~~asq~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc 299 (545)
T KOG0360|consen 220 NCSVASQMMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMC 299 (545)
T ss_pred eccHhhhccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHH
Confidence 9999999999999999999999999876654 344 555 456667779999999999999999999999999
Q ss_pred HHHHHHcCCeEeccCCHHHHHHHHHHhCCceecccC-C------CCCCccccceEEEEEeecccccccCCCCCCCceEEE
Q 000391 412 QESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-L------TSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMF 484 (1582)
Q Consensus 412 l~~L~~~gI~vv~nVK~~~LeRIAR~TGA~IisSid-L------~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~f 484 (1582)
++||.++|+++|+|+++.+|+|||++|||++++|+. + .+..+|.|+.|.+.+|++ +.++.
T Consensus 300 ~K~~veagamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~d-------------de~il 366 (545)
T KOG0360|consen 300 LKYFVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGD-------------DELIL 366 (545)
T ss_pred HHHHHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhccc-------------ceeEE
Confidence 999999999999999999999999999999999996 4 466799999999988864 68999
Q ss_pred EEcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCccccc
Q 000391 485 IEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1582)
Q Consensus 485 feGc~~~~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~ 539 (1582)
+.|.... .|+|+|||+|...|+|++|.+|+|+++++..+.++++++||||+|..
T Consensus 367 ikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~a 420 (545)
T KOG0360|consen 367 IKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETA 420 (545)
T ss_pred eccCccc-eeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHH
Confidence 9998877 99999999999999999999999999999999999999999999875
No 35
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-29 Score=283.56 Aligned_cols=267 Identities=18% Similarity=0.215 Sum_probs=240.2
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCC
Q 000391 252 EEKQRAMEKVVSGKF---KAIVSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAG 328 (1582)
Q Consensus 252 ~~~~~~l~~~~~~h~---~~l~~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GG 328 (1582)
...+++|...+..+- .++.+.||+.+.|+|+||......++|+.|+++|+..++.. -|+ +.|.|+|+.||
T Consensus 130 ~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs------~nL-~~IqIIK~~Gg 202 (527)
T KOG0363|consen 130 AAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGS------TNL-EAIQIIKKLGG 202 (527)
T ss_pred HHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCC------CCc-cceeeehhcCC
Confidence 344555665555542 55677899999999999999999999999999999998752 245 47999999999
Q ss_pred CCCCceEEEeEEEeeccCCCCCCccccCCcEEEEEecCCccccc-------cch---hhh-HHHHHHHHHHHHhhhhccC
Q 000391 329 SRNQSQIIKGLVFKKHAAHKHMPTEYKNPRLLLIRGVLGLSSSG-------LSS---FKA-MEQEKDQLKSVMDMIDMCH 397 (1582)
Q Consensus 329 s~~DS~vI~GVV~~Knvahk~Mp~~i~nPRILLL~~~LEy~r~e-------lsS---le~-i~qE~eyL~~~V~rI~~~~ 397 (1582)
++.||++=.|+++.|.+.- +-|++++||||||-+.+++-.+++ +.| +.. -..|++-++..|+||...|
T Consensus 203 ~l~dSfLDeGFlL~K~igv-~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hg 281 (527)
T KOG0363|consen 203 KLEDSFLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHG 281 (527)
T ss_pred ccccccccccceeccccCC-CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999863 679999999999999999998887 334 555 6889999999999999999
Q ss_pred CeEEEecccccHHHHHHHHHcCCeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCC
Q 000391 398 PNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGK 476 (1582)
Q Consensus 398 pnVVLveksVs~~Al~~L~~~gI~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~ 476 (1582)
+|+.+...-|.++..++|..+||+.+.+....-+||++-+||+.|++.+| ....++|+|+.++...+++
T Consensus 282 iN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGe---------- 351 (527)
T KOG0363|consen 282 INVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGE---------- 351 (527)
T ss_pred CcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCc----------
Confidence 99999999999999999999999999999999999999999999999999 9999999999998887764
Q ss_pred CCCceEEEEEcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCccccc
Q 000391 477 RPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1582)
Q Consensus 477 ~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~ 539 (1582)
.+++.|.||.-.-.|||+|||++.++|+|.+|++|||+||+-....|+.++.|||+.++-
T Consensus 352 ---d~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~ 411 (527)
T KOG0363|consen 352 ---DKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEML 411 (527)
T ss_pred ---cceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHH
Confidence 589999999988899999999999999999999999999999999999999999998864
No 36
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-29 Score=290.30 Aligned_cols=253 Identities=19% Similarity=0.258 Sum_probs=235.8
Q ss_pred HHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC
Q 000391 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH 349 (1582)
Q Consensus 270 ~~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~ 349 (1582)
...|+..+.+++.+|....-.+.+++++++|+..++. ..+.+|+ ++|+|.+..-++..|+.+|+|+|++++..|..
T Consensus 142 ~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~---~~~~idl-~mveim~mq~~s~~dT~~v~glvLdhg~rHpd 217 (520)
T KOG0359|consen 142 RETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRR---QEEPIDL-FMVEIMEMQHKSLHDTSLVQGLVLDHGARHPD 217 (520)
T ss_pred HHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeecc---CCCCcch-hHHHhhhhccCchhhhHHhhhhhccCCCCCcc
Confidence 4457788899999999999999999999999999983 3457899 69999999999999999999999999999999
Q ss_pred CCccccCCcEEEEEecCCccccc------cch---hhh-HHHHHHHHHHHHhhhhccCC----eEEEecccccHHHHHHH
Q 000391 350 MPTEYKNPRLLLIRGVLGLSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHP----NVVLVEKTVSRDIQESI 415 (1582)
Q Consensus 350 Mp~~i~nPRILLL~~~LEy~r~e------lsS---le~-i~qE~eyL~~~V~rI~~~~p----nVVLveksVs~~Al~~L 415 (1582)
||++++|+-||+++.+|||+|++ +++ -+. +..|++++...+.+|+.++- -||+.||+|+++.++.|
T Consensus 218 mp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~ 297 (520)
T KOG0359|consen 218 MPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSL 297 (520)
T ss_pred cccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhh
Confidence 99999999999999999999998 232 344 79999999999999998864 57889999999999999
Q ss_pred HHcCCeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEcCCCCceE
Q 000391 416 LEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPTRLGC 494 (1582)
Q Consensus 416 ~~~gI~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gc 494 (1582)
.+.||.++++.|+..|||+..+||+..+.|+| |++..||+|+.+++.++++ .+|+|+|+|+.+..|
T Consensus 298 a~~gIlaLRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGE-------------EkfTFIE~~~~p~S~ 364 (520)
T KOG0359|consen 298 AKSGILALRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGE-------------EKFTFIEKCNNPSSV 364 (520)
T ss_pred hhcchHHHHHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccc-------------eeeEeeecCCCCcce
Confidence 99999999999999999999999999999999 9999999999999999986 489999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCccccc
Q 000391 495 TVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1582)
Q Consensus 495 TILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~ 539 (1582)
|||+||+|.+.+..+|.+++|++.++++.+.+..+++|+||.+..
T Consensus 365 TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va 409 (520)
T KOG0359|consen 365 TILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVA 409 (520)
T ss_pred EEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHH
Confidence 999999999999999999999999999999999999999999865
No 37
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-27 Score=294.27 Aligned_cols=244 Identities=20% Similarity=0.204 Sum_probs=224.4
Q ss_pred hcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEee-ccCCCCCC-ccc
Q 000391 277 VGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKK-HAAHKHMP-TEY 354 (1582)
Q Consensus 277 ~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~K-nvahk~Mp-~~i 354 (1582)
+.+++.+|....+ +.|+.|+++|+..|..... |+ +.|++.+..||...|+.+++|++|+| .+.|..|| +.+
T Consensus 144 ~~t~v~sk~~~~~-~~i~~lv~~Av~~v~~~~~-----d~-~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~ 216 (524)
T COG0459 144 AITSVASKSANSD-EEIGELVVEAVEKVGKEQS-----DL-DGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRL 216 (524)
T ss_pred hhheeeeeeccCh-HHHHHHHHHHHHHhccccc-----cc-CCeEEEEecCCCccceEEEeeEEecCCccCCCCCCcccc
Confidence 5667888888888 9999999999999986431 66 58999999999999999999999999 89999999 899
Q ss_pred cCCcEEEEEecCCccccc------cc---hhhh-HHHHH-HHHHHHHhhhhccCCe-EEEecccccHHHHHHHHHcCCeE
Q 000391 355 KNPRLLLIRGVLGLSSSG------LS---SFKA-MEQEK-DQLKSVMDMIDMCHPN-VVLVEKTVSRDIQESILEKGMTL 422 (1582)
Q Consensus 355 ~nPRILLL~~~LEy~r~e------ls---Sle~-i~qE~-eyL~~~V~rI~~~~pn-VVLveksVs~~Al~~L~~~gI~v 422 (1582)
+||+|||++++|++.+.. +. .|.. .++|+ ++|..+|.+|...+.| ||+++++|+++|++||.+.+|++
T Consensus 217 e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt 296 (524)
T COG0459 217 ENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILT 296 (524)
T ss_pred ccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhccee
Confidence 999999999999999876 22 3666 78888 9999999999999999 99999999999999999999999
Q ss_pred eccCCHHHH-HHHHHHhCCceecccC-CCCCCccc--cceEEEEEeecccccccCCCCCCCceEEEEEcCCC--CceEEE
Q 000391 423 VFDMKLHRL-ERVARCTGSPILSSGS-LTSQKLKH--CDSFYIKKFVEEHAGFREGGKRPSKTLMFIEGCPT--RLGCTV 496 (1582)
Q Consensus 423 v~nVK~~~L-eRIAR~TGA~IisSid-L~~~~LG~--C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeGc~~--~~gcTI 496 (1582)
+++|+.++| +||++.|||.+++.++ ++...+|. |+.++..++++ ..+.+|++|.. ...|||
T Consensus 297 ~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~-------------~~~~~~~~~~~~~~~~~tI 363 (524)
T COG0459 297 GRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGD-------------YDMEKLQERKAKAGGVATI 363 (524)
T ss_pred cceecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccc-------------hhhhhhhhhhhcCCCeEEE
Confidence 999999999 8999999999999999 99999999 99999988754 47889999985 778999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 497 LLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 497 LLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
+|||+++.+++|.||.++|||+++++++.|+.+++|||+.+...
T Consensus 364 ~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~ 407 (524)
T COG0459 364 LVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEA 407 (524)
T ss_pred EECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHH
Confidence 99999999999999999999999999999999999999999763
No 38
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.6e-24 Score=247.66 Aligned_cols=233 Identities=18% Similarity=0.208 Sum_probs=210.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCCCccccCCcEEEEEecCC
Q 000391 288 SWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHMPTEYKNPRLLLIRGVLG 367 (1582)
Q Consensus 288 ~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~Mp~~i~nPRILLL~~~LE 367 (1582)
.-.+++++|+.+|+..+.|. + .|+++ .|+|.||.||.+.+|+++.|+||++.+. +-+++-+..||++++||++
T Consensus 170 ~~ed~l~~lVa~ac~si~p~---~-~Fnvd-nIrVcKi~Gg~l~~S~Vv~GmVfkr~~e--G~v~~ak~arvAvf~cP~d 242 (537)
T KOG0362|consen 170 GNEDFLTKLVAKACVSILPL---M-SFNVD-NIRVCKILGGGLEDSCVVCGMVFKRDPE--GEVKSAKDARVAVFACPFD 242 (537)
T ss_pred chHHHHHHHHHHHHHhhccc---c-ccccc-ceEEEEEecCCcccceeeEEEEeccccC--CcccccccceeEEEecCCC
Confidence 35799999999999999986 1 38884 7999999999999999999999998876 4447788999999999999
Q ss_pred ccccc------cch---hhh-HHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccCCHHHHHHHHHH
Q 000391 368 LSSSG------LSS---FKA-MEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARC 437 (1582)
Q Consensus 368 y~r~e------lsS---le~-i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nVK~~~LeRIAR~ 437 (1582)
..+++ +.+ +.. -+.|+..++.+|+.|...|++||++.+.|.+++++||.+.+|+|++--.+-+|.|++|.
T Consensus 243 ~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrt 322 (537)
T KOG0362|consen 243 IAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRT 322 (537)
T ss_pred cccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHH
Confidence 98876 333 444 57888889999999999999999999999999999999999999999999999999999
Q ss_pred hCCceecccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEE-cCCCCceEEEEEeCCCHHHHHHHHHHHHH
Q 000391 438 TGSPILSSGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE-GCPTRLGCTVLLKGSNSDELKRIKSVVQC 515 (1582)
Q Consensus 438 TGA~IisSid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffe-Gc~~~~gcTILLRG~s~~~L~evKrvl~d 515 (1582)
.||.+++.+- +..+.||+|+++++++++. .+++.|+ +|......||+|||++...|+.+||++++
T Consensus 323 vGA~~l~rl~~P~~~~lG~~d~V~~~EiG~-------------~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVdd 389 (537)
T KOG0362|consen 323 VGATALPRLFPPAPEELGYCDSVSTQEIGD-------------TLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDD 389 (537)
T ss_pred cCCccchhccCCCCccccccceeeeeecCC-------------ceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHH
Confidence 9999999999 8999999999999999753 3566565 56677889999999999999999999999
Q ss_pred HHHHHHHHhhcCeeecCCCcccccC
Q 000391 516 AVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 516 av~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
++.+.+.+....++++|.||++.++
T Consensus 390 gV~tyK~l~~d~rLlpGagatEieL 414 (537)
T KOG0362|consen 390 GVNTYKALCSDSRLLPGAGATEIEL 414 (537)
T ss_pred hHHHhhhhccCCccccCCchhHHHH
Confidence 9999999999999999999999874
No 39
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.91 E-value=2.3e-23 Score=259.80 Aligned_cols=221 Identities=16% Similarity=0.234 Sum_probs=189.5
Q ss_pred HHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCC-ceEEEeEEEeeccCCC
Q 000391 270 VSQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQ-SQIIKGLVFKKHAAHK 348 (1582)
Q Consensus 270 ~~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~D-S~vI~GVV~~Knvahk 348 (1582)
.++|++.+.+++++ .+.|++++++|+..+.++ + .|.| .+||+..| +++++|++|.+.+.|.
T Consensus 138 ~~~l~~va~ts~~~------~~~l~~lv~~A~~~v~~~---~-------~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~ 199 (520)
T cd03344 138 KEEIAQVATISANG------DEEIGELIAEAMEKVGKD---G-------VITV--EEGKTLETELEVVEGMQFDRGYLSP 199 (520)
T ss_pred HHHHHHHHHHhcCC------hHHHHHHHHHHHHHhccC---C-------cEEE--EeCCCcceeEEEEeeEEecCCCCCC
Confidence 34577777776543 688999999999988642 1 2444 58999999 7999999999998877
Q ss_pred CC-------CccccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCC-
Q 000391 349 HM-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM- 420 (1582)
Q Consensus 349 ~M-------p~~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI- 420 (1582)
.| +++++||+|++++++|... +.+..++++|.+.|++|||++++|++.|+++|.++||
T Consensus 200 ~~~~~~~~~~~~~~n~~Ili~d~~l~~~--------------~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~ 265 (520)
T cd03344 200 YFVTDPEKMEVELENPYILLTDKKISSI--------------QELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLR 265 (520)
T ss_pred ccccCcccCeEEeeCCEEEEECCCCCCH--------------HHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCc
Confidence 64 4679999999999997422 1244578999999999999999999999999999999
Q ss_pred -----eEeccC-----CHHHHHHHHHHhCCceec-----ccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEE
Q 000391 421 -----TLVFDM-----KLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMF 484 (1582)
Q Consensus 421 -----~vv~nV-----K~~~LeRIAR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~f 484 (1582)
.+|+.+ ++++|+|||++|||.+++ +++ ++...||+|+.|++.+ .+++|
T Consensus 266 ~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~ 329 (520)
T cd03344 266 GGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK----------------DDTTI 329 (520)
T ss_pred cCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee----------------ceEEE
Confidence 787755 999999999999999999 777 8878899999999765 37899
Q ss_pred EEcCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCee
Q 000391 485 IEGCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSF 529 (1582)
Q Consensus 485 feGc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~ 529 (1582)
|+||..+ ..|||+|||+|+.+++|+||.++||++++++++.+. |
T Consensus 330 i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~ 408 (520)
T cd03344 330 IGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-I 408 (520)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 9999765 589999999999999999999999999999999995 9
Q ss_pred ecCCCccccc
Q 000391 530 LVDQRAMFST 539 (1582)
Q Consensus 530 l~ggGa~~~~ 539 (1582)
|+||||++..
T Consensus 409 VpGGGa~e~~ 418 (520)
T cd03344 409 VPGGGVALLR 418 (520)
T ss_pred CcCCcHHHHH
Confidence 9999999876
No 40
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.91 E-value=1.7e-23 Score=261.81 Aligned_cols=222 Identities=15% Similarity=0.208 Sum_probs=192.2
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC-
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH- 349 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~- 349 (1582)
+.|++.+.+++ .+.+.|++|+++|+..+.++ + .|.|++..| ...++++++|++|++.+.|..
T Consensus 141 ~~l~~va~ts~------~~~~~ls~lv~~Av~~v~~~---g-------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~ 203 (542)
T PRK00013 141 EEIAQVATISA------NGDEEIGKLIAEAMEKVGKE---G-------VITVEESKG-FETELEVVEGMQFDRGYLSPYF 203 (542)
T ss_pred HHHHHHHHhcc------cchHHHHHHHHHHHHHhCcC---C-------cEEEEEcCC-CCceEEEEEeEEecCCcccccc
Confidence 34666666643 37899999999999998652 1 388988887 888999999999999988874
Q ss_pred ------CCccccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcC----
Q 000391 350 ------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG---- 419 (1582)
Q Consensus 350 ------Mp~~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g---- 419 (1582)
|++.++||+||++++.|. +. +.+..++++|.+.|++|||++++|++.|+++|..++
T Consensus 204 ~~~~~~~~~~~~n~~Ilv~d~~i~-------~~-------~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~ 269 (542)
T PRK00013 204 VTDPEKMEAELENPYILITDKKIS-------NI-------QDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGT 269 (542)
T ss_pred cccccCCeEEEecCEEEEEcCccC-------CH-------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCccc
Confidence 588999999999999653 22 124477889999999999999999999999999997
Q ss_pred --CeEeccCC-----HHHHHHHHHHhCCceec-----ccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEE
Q 000391 420 --MTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE 486 (1582)
Q Consensus 420 --I~vv~nVK-----~~~LeRIAR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffe 486 (1582)
|.+|++++ +.+|+|||++|||.+++ +++ ++...||+|+.|++.. ++++||+
T Consensus 270 ~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~ 333 (542)
T PRK00013 270 LKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK----------------DNTTIVD 333 (542)
T ss_pred ceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec----------------CEEEEEe
Confidence 89999887 88999999999999999 788 8888999999998764 4789999
Q ss_pred cCCCCc-----------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeec
Q 000391 487 GCPTRL-----------------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLV 531 (1582)
Q Consensus 487 Gc~~~~-----------------------------------gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ 531 (1582)
||..+. .|||+|||+|+.+++|+||.++||++++++++.+. ||+
T Consensus 334 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~Vp 412 (542)
T PRK00013 334 GAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVP 412 (542)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ccc
Confidence 998765 78999999999999999999999999999999995 999
Q ss_pred CCCcccccC
Q 000391 532 DQRAMFSTI 540 (1582)
Q Consensus 532 ggGa~~~~~ 540 (1582)
||||+|...
T Consensus 413 GGGa~e~~~ 421 (542)
T PRK00013 413 GGGVALLRA 421 (542)
T ss_pred CcHHHHHHH
Confidence 999999763
No 41
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.91 E-value=1.4e-23 Score=262.41 Aligned_cols=221 Identities=15% Similarity=0.205 Sum_probs=187.7
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCC-ceEEEeEEEeeccCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQ-SQIIKGLVFKKHAAHKH 349 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~D-S~vI~GVV~~Knvahk~ 349 (1582)
+.|++.+.+++ .+.+.|++|+++|+..+.++ + ++.|+ .||...| +++++|++|.+.+.|..
T Consensus 141 ~~l~~va~ts~------~~~~~l~~lv~~Av~~v~~~---g-------~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~ 202 (542)
T PRK12849 141 EEIAQVATISA------NGDEEIGELIAEAMEKVGKD---G-------VITVE--ESKTLETELEVTEGMQFDRGYLSPY 202 (542)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHHhccC---C-------cEeEE--eCCCcceeEEEEEeEEEecCcccCc
Confidence 33666666643 37799999999999998653 2 23343 6999887 79999999999998874
Q ss_pred -------CCccccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHc----
Q 000391 350 -------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK---- 418 (1582)
Q Consensus 350 -------Mp~~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~---- 418 (1582)
|++.++||+||++++.|. +. +.+..++++|.+.+++||+++++|++.|+++|.++
T Consensus 203 ~~~~~~~~~~~~~n~~Ili~d~~i~-------~~-------~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~ 268 (542)
T PRK12849 203 FVTDPERMEAVLEDPLILLTDKKIS-------SL-------QDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRG 268 (542)
T ss_pred ccccccCceEEeeCcEEEeecCCcC-------CH-------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhc
Confidence 689999999999999653 21 22445789999999999999999999999999999
Q ss_pred --CCeEeccCC-----HHHHHHHHHHhCCceec-----ccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEE
Q 000391 419 --GMTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485 (1582)
Q Consensus 419 --gI~vv~nVK-----~~~LeRIAR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ff 485 (1582)
||++|++++ +.+|+|||++|||.+++ +++ ++...||+|+.|++.+ +++++|
T Consensus 269 ~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i 332 (542)
T PRK12849 269 GLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK----------------DNTTIV 332 (542)
T ss_pred cccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee----------------eeEEEE
Confidence 999999888 55599999999999999 577 8888899999998754 478889
Q ss_pred EcCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeee
Q 000391 486 EGCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 530 (1582)
Q Consensus 486 eGc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l 530 (1582)
+||..+ ..|||+|||+|..+++|+||.++||++++++++.+. ||
T Consensus 333 ~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~V 411 (542)
T PRK12849 333 DGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IV 411 (542)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-ee
Confidence 999865 389999999999999999999999999999999985 99
Q ss_pred cCCCcccccC
Q 000391 531 VDQRAMFSTI 540 (1582)
Q Consensus 531 ~ggGa~~~~~ 540 (1582)
+||||++...
T Consensus 412 pGGGa~e~~l 421 (542)
T PRK12849 412 PGGGVALLRA 421 (542)
T ss_pred cCCCHHHHHH
Confidence 9999999763
No 42
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.90 E-value=6.9e-23 Score=257.37 Aligned_cols=221 Identities=12% Similarity=0.172 Sum_probs=189.5
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCc-eEEEeEEEeeccCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQS-QIIKGLVFKKHAAHKH 349 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS-~vI~GVV~~Knvahk~ 349 (1582)
++|++.+.+++. +.+.|++|+++|+..+.++ + .|.++.||+..|| ++++|++|.+...|..
T Consensus 153 ~~l~~va~ts~~------~~~~l~~li~eAv~~vg~~---g---------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~ 214 (555)
T PTZ00114 153 EDILNVATISAN------GDVEIGSLIADAMDKVGKD---G---------TITVEDGKTLEDELEVVEGMSFDRGYISPY 214 (555)
T ss_pred HHHHHHHHHHcC------ChHHHHHHHHHHHHHhCcC---C---------cEEEcCCCCccceEEEEEEEEEeccccccc
Confidence 446777777543 3578999999999998653 1 1888999999999 7999999999988875
Q ss_pred -------CCccccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcC---
Q 000391 350 -------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKG--- 419 (1582)
Q Consensus 350 -------Mp~~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~g--- 419 (1582)
|+..++||+||+++++|+.. +.+..++++|.+.+.+||+++++|++.|+++|..++
T Consensus 215 ~~~~~~~~~~~l~~~~Ili~d~~L~~~--------------~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g 280 (555)
T PTZ00114 215 FVTNEKTQKVELENPLILVTDKKISSI--------------QSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRG 280 (555)
T ss_pred cccccccCeEEecCCEEEEEcCCCCCH--------------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCC
Confidence 58899999999999999831 125677889999999999999999999999999986
Q ss_pred ---CeEecc-----CCHHHHHHHHHHhCCceeccc------C-CCCCCccccceEEEEEeecccccccCCCCCCCceEEE
Q 000391 420 ---MTLVFD-----MKLHRLERVARCTGSPILSSG------S-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMF 484 (1582)
Q Consensus 420 ---I~vv~n-----VK~~~LeRIAR~TGA~IisSi------d-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~f 484 (1582)
|.+|++ +++.+|+|||++|||.++++. + +++..||+|+.|++.+. .+++
T Consensus 281 ~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~----------------~~~~ 344 (555)
T PTZ00114 281 GLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKD----------------ETVI 344 (555)
T ss_pred ceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEec----------------eEEE
Confidence 899976 788999999999999999998 5 67778999999998871 4556
Q ss_pred EEcCC-----------------------------------CCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCee
Q 000391 485 IEGCP-----------------------------------TRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSF 529 (1582)
Q Consensus 485 feGc~-----------------------------------~~~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~ 529 (1582)
|+||. .+..|||+|||+|+.+++|+||.++||++++++++.+. |
T Consensus 345 ~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-v 423 (555)
T PTZ00114 345 LTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-I 423 (555)
T ss_pred EeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-c
Confidence 66665 56799999999999999999999999999999998866 9
Q ss_pred ecCCCcccccC
Q 000391 530 LVDQRAMFSTI 540 (1582)
Q Consensus 530 l~ggGa~~~~~ 540 (1582)
|+||||++...
T Consensus 424 VpGGGa~e~~~ 434 (555)
T PTZ00114 424 VPGGGVALLRA 434 (555)
T ss_pred ccCCcHHHHHH
Confidence 99999998763
No 43
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.90 E-value=6.8e-23 Score=256.01 Aligned_cols=221 Identities=15% Similarity=0.219 Sum_probs=187.5
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCC-CCceEEEeEEEeeccCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR-NQSQIIKGLVFKKHAAHKH 349 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~-~DS~vI~GVV~~Knvahk~ 349 (1582)
++|++.+.++. .+.+.|++++++|+..+.++ + .|.|+. ||.. .+|++++|++|++.+.|..
T Consensus 140 ~~l~~va~ts~------~~~~~l~~lv~~A~~~v~~~---~-------~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~ 201 (524)
T TIGR02348 140 KEIAQVATISA------NNDEEIGSLIAEAMEKVGKD---G-------VITVEE--SKSLETELEVVEGMQFDRGYISPY 201 (524)
T ss_pred HHHHHHHHHhc------cChHHHHHHHHHHHHHhCcC---C-------cEeeec--CCCccccEEEEEeEEEcCCCCCcc
Confidence 44666666643 36789999999999998653 1 233443 6666 6699999999999998876
Q ss_pred C-------CccccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHc----
Q 000391 350 M-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK---- 418 (1582)
Q Consensus 350 M-------p~~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~---- 418 (1582)
| ++.++||+||++++.|+- . +.+..++++|.+.|++|||++++|++.|+++|..+
T Consensus 202 ~~~~~~~~~~~~~n~~Ili~d~~i~~-------~-------~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~ 267 (524)
T TIGR02348 202 FVTDAEKMEVELENPYILITDKKISN-------I-------KDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRG 267 (524)
T ss_pred cccCccCCeEEeeCceeeeccCCcCC-------H-------HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhccc
Confidence 5 888999999999996541 1 12577889999999999999999999999999986
Q ss_pred --CCeEeccCCH-----HHHHHHHHHhCCceec-----ccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEE
Q 000391 419 --GMTLVFDMKL-----HRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485 (1582)
Q Consensus 419 --gI~vv~nVK~-----~~LeRIAR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ff 485 (1582)
||.+|++++. .+|+|||++|||.+++ +++ +++..||+|+.|++.+ +++++|
T Consensus 268 ~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i 331 (524)
T TIGR02348 268 TLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK----------------DNTTIV 331 (524)
T ss_pred ccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee----------------cEEEEE
Confidence 8999988854 8999999999999999 888 8888999999998765 478999
Q ss_pred EcCCCCc-----------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeee
Q 000391 486 EGCPTRL-----------------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 530 (1582)
Q Consensus 486 eGc~~~~-----------------------------------gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l 530 (1582)
+||..+. .+||+|||+|..+++|+||.++||++++++++.+. ||
T Consensus 332 ~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~V 410 (524)
T TIGR02348 332 EGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IV 410 (524)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-Cc
Confidence 9987654 68999999999999999999999999999999996 99
Q ss_pred cCCCcccccC
Q 000391 531 VDQRAMFSTI 540 (1582)
Q Consensus 531 ~ggGa~~~~~ 540 (1582)
+|||+++...
T Consensus 411 pGGGa~e~~~ 420 (524)
T TIGR02348 411 PGGGVALLRA 420 (524)
T ss_pred cCCcHHHHHH
Confidence 9999998763
No 44
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.90 E-value=8.2e-23 Score=255.83 Aligned_cols=221 Identities=15% Similarity=0.224 Sum_probs=189.9
Q ss_pred HHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCC--
Q 000391 272 QLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKH-- 349 (1582)
Q Consensus 272 qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~-- 349 (1582)
.|++.+.+++ .+.+.|++|+++|+..+.++ + .|.|.+.. |...++++++|++|.+...|..
T Consensus 143 ~l~~va~~s~------~~~~~l~~lv~~Av~~vg~~---g-------~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~ 205 (541)
T PRK12851 143 EIAQVATISA------NGDAEIGRLVAEAMEKVGNE---G-------VITVEESK-TAETELEVVEGMQFDRGYLSPYFV 205 (541)
T ss_pred HHHHHHHHhc------cChHHHHHHHHHHHHHhccc---C-------ceEEEEcc-CCCcceEEEEEEEecCCccccccc
Confidence 3555555532 47899999999999998652 1 35677766 6778999999999999998874
Q ss_pred -----CCccccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCC----
Q 000391 350 -----MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM---- 420 (1582)
Q Consensus 350 -----Mp~~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI---- 420 (1582)
|+++++||+||+++++|+ ++ +.+..++++|.+.+++|||++++|++.|+++|.++||
T Consensus 206 ~~~~~~~~~~~~~~Ilv~d~~i~-------~~-------~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~ 271 (541)
T PRK12851 206 TDADKMEAELEDPYILIHEKKIS-------NL-------QDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGL 271 (541)
T ss_pred cCCCCCeEEecccEEEEEcCCcC-------cH-------HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCce
Confidence 999999999999999864 12 1266788999999999999999999999999999997
Q ss_pred --eEecc-----CCHHHHHHHHHHhCCceec-----ccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEEc
Q 000391 421 --TLVFD-----MKLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIEG 487 (1582)
Q Consensus 421 --~vv~n-----VK~~~LeRIAR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffeG 487 (1582)
.+|++ +++.+|+|||++|||.+++ +++ ++...||+|+.|++++ ++++||+|
T Consensus 272 ~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~ 335 (541)
T PRK12851 272 KVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK----------------ENTTIIDG 335 (541)
T ss_pred eEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc----------------ceEEEEcC
Confidence 77875 9999999999999999999 677 7888899999998876 47889999
Q ss_pred CCCCc-----------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecC
Q 000391 488 CPTRL-----------------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVD 532 (1582)
Q Consensus 488 c~~~~-----------------------------------gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g 532 (1582)
|..+. .|||+|||+|..+++|+||.++||++++++++.+. ||+|
T Consensus 336 ~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpG 414 (541)
T PRK12851 336 AGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPG 414 (541)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccC
Confidence 97653 78999999999999999999999999999999995 9999
Q ss_pred CCcccccC
Q 000391 533 QRAMFSTI 540 (1582)
Q Consensus 533 gGa~~~~~ 540 (1582)
|||++...
T Consensus 415 GGa~e~~~ 422 (541)
T PRK12851 415 GGVALLRA 422 (541)
T ss_pred chHHHHHH
Confidence 99998763
No 45
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.89 E-value=2.5e-22 Score=251.63 Aligned_cols=221 Identities=14% Similarity=0.234 Sum_probs=187.4
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~M 350 (1582)
++|++.+.+++.+ .+.|++|+++|+..+.++ + .+|+. ..+..| .++++++|++|.+.+.|..|
T Consensus 142 ~~l~~va~~s~~~------~~~l~~lv~eAv~~vg~~---g-~i~v~----~~~~~g---~~~~~v~G~~~~~g~~~p~~ 204 (544)
T PRK12850 142 KEIAQVATISANG------DESIGEMIAEAMDKVGKE---G-VITVE----EAKTLG---TELDVVEGMQFDRGYLSPYF 204 (544)
T ss_pred HHHHHHHHHhcCC------HHHHHHHHHHHHHHhccc---C-ceeeE----EccccC---cceEEEEeEEecCccCcCcc
Confidence 4466777665433 588999999999999653 2 34442 222344 68999999999999988764
Q ss_pred -------CccccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCC---
Q 000391 351 -------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGM--- 420 (1582)
Q Consensus 351 -------p~~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI--- 420 (1582)
++.++||+||++++.|. ++ +.+..++++|++.|++||+++++|++.|+++|.++||
T Consensus 205 ~~~~~~~~~~~~n~~Ill~d~~i~-------~~-------~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~ 270 (544)
T PRK12850 205 VTNPEKMRAELEDPYILLHEKKIS-------NL-------QDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGG 270 (544)
T ss_pred ccccccCeEEEeCCEEEEEecccC-------CH-------HHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCccc
Confidence 88999999999999653 21 2277889999999999999999999999999999999
Q ss_pred ---eEecc-----CCHHHHHHHHHHhCCceec-----ccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEE
Q 000391 421 ---TLVFD-----MKLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE 486 (1582)
Q Consensus 421 ---~vv~n-----VK~~~LeRIAR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffe 486 (1582)
.+|++ +++.+|+|||++|||.+++ +++ ++...||+|+.|++.+ +++++|+
T Consensus 271 ~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~ 334 (544)
T PRK12850 271 LKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK----------------ENTTIID 334 (544)
T ss_pred ceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe----------------eeEEEEe
Confidence 89887 9999999999999999999 677 7888899999998765 3788999
Q ss_pred cCCCCc-----------------------------------eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeec
Q 000391 487 GCPTRL-----------------------------------GCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLV 531 (1582)
Q Consensus 487 Gc~~~~-----------------------------------gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ 531 (1582)
||..+. .|||+|||+|+.+++|+||.++||++++++++.+ .||+
T Consensus 335 g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~-g~Vp 413 (544)
T PRK12850 335 GAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEE-GIVP 413 (544)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhc-CCcc
Confidence 998653 7999999999999999999999999999999999 5999
Q ss_pred CCCccccc
Q 000391 532 DQRAMFST 539 (1582)
Q Consensus 532 ggGa~~~~ 539 (1582)
||||++..
T Consensus 414 GGGa~e~~ 421 (544)
T PRK12850 414 GGGVALLR 421 (544)
T ss_pred CCcHHHHH
Confidence 99999876
No 46
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.88 E-value=1.8e-21 Score=244.31 Aligned_cols=221 Identities=16% Similarity=0.209 Sum_probs=187.2
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCC-CCceEEEeEEEeeccCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR-NQSQIIKGLVFKKHAAHKH 349 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~-~DS~vI~GVV~~Knvahk~ 349 (1582)
++|++.+.+++.+ .+.|++|+++|+..|.++ + .|.|.. ||.. .++.+++|++|.+...+..
T Consensus 142 ~~l~~va~~s~~~------~~~l~~li~eA~~~vg~~---g-------~i~v~~--g~~~~~~~~~v~G~~~~~g~~~p~ 203 (545)
T PRK12852 142 AEIAQVGTISANG------DAAIGKMIAQAMQKVGNE---G-------VITVEE--NKSLETEVDIVEGMKFDRGYLSPY 203 (545)
T ss_pred HHHHHHHhhhcCC------hHHHHHHHHHHHHHhccC---C-------ceeeec--CCCcceEEEEEEeEEecCCccCCc
Confidence 4466666665433 488999999999999753 2 234442 7776 7999999999999988774
Q ss_pred -------CCccccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHc----
Q 000391 350 -------MPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEK---- 418 (1582)
Q Consensus 350 -------Mp~~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~---- 418 (1582)
|+..++||+|||+++.|. +. +++..+++.|.+.+++|||++++|++.|+++|..+
T Consensus 204 ~v~~~~~~~~~l~n~~Ili~d~~i~-------~~-------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~ 269 (545)
T PRK12852 204 FVTNAEKMTVELDDAYILLHEKKLS-------GL-------QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRG 269 (545)
T ss_pred cccccccceEEecCceEEEecCccC-------CH-------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccc
Confidence 999999999999987543 11 36777899999999999999999999999999876
Q ss_pred --CCeEeccCC-----HHHHHHHHHHhCCceec-----ccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEE
Q 000391 419 --GMTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485 (1582)
Q Consensus 419 --gI~vv~nVK-----~~~LeRIAR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ff 485 (1582)
+|++|++++ +.+|+|||++|||.+++ +++ ++...||+|+.|++.+ +.+++|
T Consensus 270 ~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~----------------~~~~~i 333 (545)
T PRK12852 270 GLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK----------------ENTTIV 333 (545)
T ss_pred cceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc----------------cEEEEE
Confidence 799999666 99999999999999999 677 8888899999998876 367889
Q ss_pred EcCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeee
Q 000391 486 EGCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 530 (1582)
Q Consensus 486 eGc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l 530 (1582)
+||..+ ..|||+|||+|+.+++|+||.++||++++++++.+. ||
T Consensus 334 ~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~V 412 (545)
T PRK12852 334 NGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IV 412 (545)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 998753 679999999999999999999999999999999995 99
Q ss_pred cCCCcccccC
Q 000391 531 VDQRAMFSTI 540 (1582)
Q Consensus 531 ~ggGa~~~~~ 540 (1582)
+||||++...
T Consensus 413 pGGGa~e~~~ 422 (545)
T PRK12852 413 PGGGVALLRA 422 (545)
T ss_pred cCchHHHHHH
Confidence 9999999763
No 47
>CHL00093 groEL chaperonin GroEL
Probab=99.86 E-value=3.3e-21 Score=241.27 Aligned_cols=223 Identities=15% Similarity=0.209 Sum_probs=181.0
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCceEEEeEEEeeccCCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQSQIIKGLVFKKHAAHKHM 350 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS~vI~GVV~~Knvahk~M 350 (1582)
++|++.+.+++ .+.+.|+.|+++|+..|.++ + .+|+ + -.+|...++++++|++|.+...|..|
T Consensus 141 ~~L~~VA~ts~------~~~~~l~~lv~eAv~~vg~~---g-~i~~------~-~g~~~~~~~~~v~G~~~~~g~~~p~f 203 (529)
T CHL00093 141 QAITQVASISA------GNDEEVGSMIADAIEKVGRE---G-VISL------E-EGKSTVTELEITEGMRFEKGFISPYF 203 (529)
T ss_pred HHHHHHHHHhc------cChHHHHHHHHHHHHHhccC---C-ceee------c-CCCccceeeEEEeeEEecCccCcCcc
Confidence 34666666643 37899999999999999652 2 2333 2 12345667899999999999887754
Q ss_pred ---Cc----cccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHH--HHH----
Q 000391 351 ---PT----EYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQES--ILE---- 417 (1582)
Q Consensus 351 ---p~----~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~--L~~---- 417 (1582)
++ .++||+||+++++|++.+ ..+..++++|...+.++|+++++|++.|+.+ |.+
T Consensus 204 v~~~k~~~~~l~n~~Ili~d~~le~~~-------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~ 270 (529)
T CHL00093 204 VTDTERMEVVQENPYILLTDKKITLVQ-------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGI 270 (529)
T ss_pred ccCCccceEEecCceehhhcCCCCchH-------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhccc
Confidence 44 589999999999999762 3477888999999999999999999955554 477
Q ss_pred cCCeEeccC-----CHHHHHHHHHHhCCceec-----ccC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEEE
Q 000391 418 KGMTLVFDM-----KLHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFIE 486 (1582)
Q Consensus 418 ~gI~vv~nV-----K~~~LeRIAR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ffe 486 (1582)
+||.+|+++ ++.+|+|||++|||.+++ +++ +++..||+|+.+++.+ +++++|+
T Consensus 271 ~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~~~ 334 (529)
T CHL00093 271 VNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK----------------DSTTIIA 334 (529)
T ss_pred ceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec----------------CEEEEEe
Confidence 599999998 458899999999999999 687 8888899999999764 3677787
Q ss_pred c---------CCCC-------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecC
Q 000391 487 G---------CPTR-------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVD 532 (1582)
Q Consensus 487 G---------c~~~-------------------------~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~g 532 (1582)
+ |... ..|||+|||+|+.+++|.||.++||++++++++.+. +|||
T Consensus 335 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpG 413 (529)
T CHL00093 335 DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPG 413 (529)
T ss_pred cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccC
Confidence 5 3321 378899999999999999999999999999999995 9999
Q ss_pred CCcccccC
Q 000391 533 QRAMFSTI 540 (1582)
Q Consensus 533 gGa~~~~~ 540 (1582)
||+++...
T Consensus 414 GGa~e~~~ 421 (529)
T CHL00093 414 GGATLVHL 421 (529)
T ss_pred CcHHHHHH
Confidence 99998763
No 48
>PRK14104 chaperonin GroEL; Provisional
Probab=99.86 E-value=1.2e-20 Score=236.52 Aligned_cols=221 Identities=16% Similarity=0.192 Sum_probs=183.9
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCC-CCceEEEeEEEeeccCCCC
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSR-NQSQIIKGLVFKKHAAHKH 349 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~-~DS~vI~GVV~~Knvahk~ 349 (1582)
++|++.+.++..++ +.|+.|+++|+..+.++ + .|.|..+ +.. .++++++|++|++...|+.
T Consensus 142 ~~l~~va~~s~~~d------~~i~~lv~~Av~~vg~~---g-------~i~v~~~--~~~~~~~~~~~G~~~~~g~~~p~ 203 (546)
T PRK14104 142 DEIAQVGTISANGD------AEIGKFLADAMKKVGNE---G-------VITVEEA--KSLETELDVVEGMQFDRGYISPY 203 (546)
T ss_pred HHHHHHHHHHhcCc------hHHHHHHHHHHHHhccC---C-------ceeeEec--ccccceEEEEEEEEEeCCCCCcc
Confidence 44666666654433 66999999999998652 1 3445543 445 5899999999999998875
Q ss_pred C-------CccccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHH-----
Q 000391 350 M-------PTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILE----- 417 (1582)
Q Consensus 350 M-------p~~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~----- 417 (1582)
| +..++||+|++.+.. +.++ +.+..++++|...|++||+++++|++.|+++|..
T Consensus 204 ~~~~~~~~~~~~~~~~Ilv~d~~-------i~~~-------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~ 269 (546)
T PRK14104 204 FVTNADKMRVEMDDAYILINEKK-------LSSL-------NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRG 269 (546)
T ss_pred hhcCcccCceeeeCcEEEEehhh-------hcCH-------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccc
Confidence 5 778899999999722 2333 2266889999999999999999999999999984
Q ss_pred -cCCeEeccCC-----HHHHHHHHHHhCCceecc-----cC-CCCCCccccceEEEEEeecccccccCCCCCCCceEEEE
Q 000391 418 -KGMTLVFDMK-----LHRLERVARCTGSPILSS-----GS-LTSQKLKHCDSFYIKKFVEEHAGFREGGKRPSKTLMFI 485 (1582)
Q Consensus 418 -~gI~vv~nVK-----~~~LeRIAR~TGA~IisS-----id-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~~~~Ktl~ff 485 (1582)
.||.+|++++ +.+|+|||++|||.++++ ++ ++...||+|+.+++. .+.+++|
T Consensus 270 ~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~----------------~~~~~~i 333 (546)
T PRK14104 270 GLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMID----------------KENTTIV 333 (546)
T ss_pred eeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEc----------------CCEEEEE
Confidence 6899997777 899999999999999999 77 888889999998852 1478889
Q ss_pred EcCCCC-----------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeee
Q 000391 486 EGCPTR-----------------------------------LGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFL 530 (1582)
Q Consensus 486 eGc~~~-----------------------------------~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l 530 (1582)
+||..+ ..+||+|||+|+.+++|+||.++||++++++++.+. ||
T Consensus 334 ~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~V 412 (546)
T PRK14104 334 NGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IV 412 (546)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cC
Confidence 999875 789999999999999999999999999999999996 99
Q ss_pred cCCCcccccC
Q 000391 531 VDQRAMFSTI 540 (1582)
Q Consensus 531 ~ggGa~~~~~ 540 (1582)
+|||+++...
T Consensus 413 pGGGa~e~~~ 422 (546)
T PRK14104 413 PGGGVALLRA 422 (546)
T ss_pred cCchHHHHHH
Confidence 9999998763
No 49
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.85 E-value=6.2e-21 Score=240.47 Aligned_cols=231 Identities=16% Similarity=0.196 Sum_probs=186.0
Q ss_pred HHHHHhhcccCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCc-eEEEeEEEeeccCCC-
Q 000391 271 SQLLKSVGVVSSGKDGESWVDIVTSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQS-QIIKGLVFKKHAAHK- 348 (1582)
Q Consensus 271 ~qLL~~~~~sl~sK~~~~w~~~ls~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS-~vI~GVV~~Knvahk- 348 (1582)
.+|++.+.++++ +.+.|++|+++|+..|.++ | .++ + -.||+..|+ ++++|++|.+...|+
T Consensus 196 ~~L~~vA~tS~~------~~~~i~~liaeAv~~Vg~~---g-~i~------v--~~g~s~~dsl~~v~G~~~d~g~~spy 257 (600)
T PLN03167 196 SELADVAAVSAG------NNYEVGNMIAEAMSKVGRK---G-VVT------L--EEGKSAENNLYVVEGMQFDRGYISPY 257 (600)
T ss_pred HHHHHHHHHhcc------CcHHHHHHHHHHHHHhccC---C-cEE------e--ccCCCccceeEEEEEEEecCCccCcc
Confidence 356677777543 4468999999999999652 2 222 2 269999998 899999999999888
Q ss_pred ------CCCccccCCcEEEEEecCCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHH------
Q 000391 349 ------HMPTEYKNPRLLLIRGVLGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESIL------ 416 (1582)
Q Consensus 349 ------~Mp~~i~nPRILLL~~~LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~------ 416 (1582)
+|+++++||+|||+++.|+. .+ .+..++++|...++++|++.++|++.|+++|.
T Consensus 258 fvt~~~~m~~~l~np~Ill~d~~i~~-------~~-------~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g 323 (600)
T PLN03167 258 FVTDSEKMSVEYDNCKLLLVDKKITN-------AR-------DLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRG 323 (600)
T ss_pred cccCcCCCeEEEeCCEEEEEccccCC-------HH-------HHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccc
Confidence 89999999999999985432 21 12224457788999999999999999999999
Q ss_pred HcCCeEeccCC-----HHHHHHHHHHhCCceec-----ccC-CCCCCccccceEEEEE-----eecccccccCCC-CCCC
Q 000391 417 EKGMTLVFDMK-----LHRLERVARCTGSPILS-----SGS-LTSQKLKHCDSFYIKK-----FVEEHAGFREGG-KRPS 479 (1582)
Q Consensus 417 ~~gI~vv~nVK-----~~~LeRIAR~TGA~Iis-----Sid-L~~~~LG~C~~f~v~~-----~~~~~~~~~~g~-~~~~ 479 (1582)
..+|.+|+.++ ++.|+|||.+|||.+++ +++ ++...||+|+.|++++ ++.+ |. ....
T Consensus 324 ~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~------~~~~~i~ 397 (600)
T PLN03167 324 SLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDG------STQEAVN 397 (600)
T ss_pred cceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCC------ccHHHHH
Confidence 88899999995 88999999999999999 677 8888899999999987 3221 00 0122
Q ss_pred ceEEEEEcCC------------C------CceEEEE-EeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCcccccC
Q 000391 480 KTLMFIEGCP------------T------RLGCTVL-LKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFSTI 540 (1582)
Q Consensus 480 Ktl~ffeGc~------------~------~~gcTIL-LRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~~ 540 (1582)
+++.+|++|. . ..++||| |||+|+.+|+|+||.++||++++++++.+. +|+|||+++...
T Consensus 398 ~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~l 476 (600)
T PLN03167 398 KRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRL 476 (600)
T ss_pred HHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHH
Confidence 5777888775 1 1267777 999999999999999999999999999999 999999998763
No 50
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.2e-19 Score=199.83 Aligned_cols=143 Identities=18% Similarity=0.240 Sum_probs=138.3
Q ss_pred HHHHHhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccCCHHHHHHHHHHhCCceecccC-CCCCCccccceEEEEEe
Q 000391 386 LKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPILSSGS-LTSQKLKHCDSFYIKKF 464 (1582)
Q Consensus 386 L~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nVK~~~LeRIAR~TGA~IisSid-L~~~~LG~C~~f~v~~~ 464 (1582)
+..+++.|+..|+++++||++.++.|.++|.+++..+|++|.-++||-||-+||+.|++.+. |++.+||+|+.++...|
T Consensus 144 f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sf 223 (400)
T KOG0357|consen 144 FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISF 223 (400)
T ss_pred HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEec
Confidence 78899999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ecccccccCCCCCCCceEEEEEcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCccccc
Q 000391 465 VEEHAGFREGGKRPSKTLMFIEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1582)
Q Consensus 465 ~~~~~~~~~g~~~~~Ktl~ffeGc~~~~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~ 539 (1582)
+.. ..+++++|.|++.+..||.+||+|.-+.+|.||++|||+||++||+++.+++.|||+.+..
T Consensus 224 gtt-----------kdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEis 287 (400)
T KOG0357|consen 224 GTT-----------KDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIS 287 (400)
T ss_pred ccc-----------cceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhh
Confidence 753 4789999999999999999999999999999999999999999999999999999998874
No 51
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=95.77 E-value=0.0081 Score=80.91 Aligned_cols=100 Identities=9% Similarity=-0.229 Sum_probs=81.3
Q ss_pred CCCCCCCChhcceeeeeecCcEEEEEEEecCccccCCCCCCCcEEEeecCCCCCCCCCCCCCCceEEcccccccccHHHH
Q 000391 781 QCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVISTAACGLSFGKF 860 (1582)
Q Consensus 781 ~C~sC~~pm~~H~r~YvH~~g~ltI~Ve~l~~~~~lpge~~~~I~MWs~Ck~C~~~~g~~~sTp~v~MSd~tW~~SFGKf 860 (1582)
.|..|+.||..|++.|+|..- ...-+...+. ++++ ..+|.||++|..|+. .+-+ +|...+|++.+|++
T Consensus 658 ~~~~~~~~~~~~lv~~~es~~--~~~~~s~~~~--~~~l-~e~~~~~~~~~~~k~------~~~~-~~~~~~~~~~~~~~ 725 (1598)
T KOG0230|consen 658 LSSYSKGPKQNGLVPAHESVL--NDLHESTLSI--LSKL-PETRSGTHEGNEDKG------PGLE-PELANNQNIQRPEE 725 (1598)
T ss_pred hhhhcCchhhccccccccccc--cccccccccc--cccc-cchhcccchhccccC------cccc-ccccccccccchhh
Confidence 345689999999999999988 3333444433 5665 358999999999999 5888 99999999999999
Q ss_pred HHHhcCCCCCCCCCCCCCCCccccceeecccCCeE
Q 000391 861 LELSFSHHSSSTRLSSCGHSLHRDFLYFFGLGPMV 895 (1582)
Q Consensus 861 LELsF~~~~~~~r~~~C~Hsl~rDhlryFg~~~~V 895 (1582)
+|-+ ....+.+...|.|.+---|.|+| +.++|
T Consensus 726 ~e~~--~s~~~~~~~~HQsilVl~ss~~~-~k~~~ 757 (1598)
T KOG0230|consen 726 TEEQ--SSKDALDPSSHQSILVLFSSRSV-LKGSV 757 (1598)
T ss_pred hhhh--hcccCCCccccceeEEEEeeeee-ccCCc
Confidence 9998 34455667889999999999999 88887
No 52
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.78 Score=57.44 Aligned_cols=214 Identities=14% Similarity=0.159 Sum_probs=128.0
Q ss_pred HHHHHHHHHhcCCCCCCCCccCcccCeEEEEccCCCCCCc-eEEEeEEEeeccCCC-------CCCccccCCcEEEEEec
Q 000391 294 TSLSWEAASSLRPGSVDGKSLDLNSYIKVKCIAAGSRNQS-QIIKGLVFKKHAAHK-------HMPTEYKNPRLLLIRGV 365 (1582)
Q Consensus 294 s~L~~~Av~~V~pd~~~g~~mDi~~yVKIkkI~GGs~~DS-~vI~GVV~~Knvahk-------~Mp~~i~nPRILLL~~~ 365 (1582)
-.++-+|+..|.++ .-|.|+. |.+..|. +++.|+=|.+....+ .+...++||.+||..-.
T Consensus 172 g~li~~a~~kvG~~----------GVItv~~--gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kk 239 (550)
T KOG0356|consen 172 GNLISDAMKKVGRK----------GVITVKD--GKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKK 239 (550)
T ss_pred HHHHHHHHHHhCcC----------CeEEeec--CCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhh
Confidence 33667777777653 1233332 5555543 788899888876542 34445666666654322
Q ss_pred CCccccccchhhhHHHHHHHHHHHHhhhhccCCeEEEecccccHHHHHHHHHcCCeEe-----------ccCCHHHHHHH
Q 000391 366 LGLSSSGLSSFKAMEQEKDQLKSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLV-----------FDMKLHRLERV 434 (1582)
Q Consensus 366 LEy~r~elsSle~i~qE~eyL~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv-----------~nVK~~~LeRI 434 (1582)
+.+=++.+..+-......+|=||+. ..|+..|+..|.=++--+. .+-+...|.+|
T Consensus 240 -------------i~~v~~ivp~LE~A~~~~~PLliIA-eDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Di 305 (550)
T KOG0356|consen 240 -------------ISSVQSIVPALELALAKRRPLLIIA-EDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDI 305 (550)
T ss_pred -------------hhHHHHHhHHHHHhhhccCceEEEe-hhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHH
Confidence 1111222222223334456655555 5688888887654332221 44467789999
Q ss_pred HHHhCCceecc------cC-CCCCCccccceEEEEEeecccccccCCCC------------------------CCCceEE
Q 000391 435 ARCTGSPILSS------GS-LTSQKLKHCDSFYIKKFVEEHAGFREGGK------------------------RPSKTLM 483 (1582)
Q Consensus 435 AR~TGA~IisS------id-L~~~~LG~C~~f~v~~~~~~~~~~~~g~~------------------------~~~Ktl~ 483 (1582)
|-.|||.++.. ++ ....+||+|..+.+.+-.. .-+.+.+.+ +..+.+-
T Consensus 306 ai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t-~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a 384 (550)
T KOG0356|consen 306 AILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDT-MLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLA 384 (550)
T ss_pred HHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcc-eeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHH
Confidence 99999998853 23 4568899999988765210 000000000 0000111
Q ss_pred EEEcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhcCeeecCCCccccc
Q 000391 484 FIEGCPTRLGCTVLLKGSNSDELKRIKSVVQCAVVMAYHLILETSFLVDQRAMFST 539 (1582)
Q Consensus 484 ffeGc~~~~gcTILLRG~s~~~L~evKrvl~dav~v~~~l~lE~s~l~ggGa~~~~ 539 (1582)
-|.| -.++|-+-|.++-++++-|-.+.||+.+.++. .|..++||||+.+..
T Consensus 385 ~ls~----gvavi~vGg~se~Ev~ekk~rv~dalnat~aa-veeGivpGGG~all~ 435 (550)
T KOG0356|consen 385 KLSG----GVAVIKVGGHSEVEVNEKKDRVEDALNATRAA-VEEGIVPGGGTALLR 435 (550)
T ss_pred HhcC----CeEEEEecCcchhhhhhhhhhHHHHHHHHHHH-hhcCcccCCchHHHH
Confidence 1111 24667777999999999999999999988777 567899999988754
No 53
>PLN02667 inositol polyphosphate multikinase
Probab=57.14 E-value=19 Score=43.11 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=46.3
Q ss_pred ecCCcEEEEecc-----HHHHHHHHHHHHH--HHHHHHhhccCCCCceeeeeeeEEEEEeecCCCCceeeEEEEEEeccC
Q 000391 1438 TLDDRFIIKEIK-----KTEFDSFDKFALH--YFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMVMENLT 1510 (1582)
Q Consensus 1438 T~D~rfIIKtis-----~~E~~~fl~~lp~--Yf~y~~~~~~~n~~TlL~Ki~Gly~i~~~~~~~g~~~k~~~iVMeNlf 1510 (1582)
+.|+..|+|-+. ..|+++...+... .-.. ..-+++|+||...+...+ |+ .+||||||.
T Consensus 23 ~~~~g~~~Kp~~~~~rg~rE~~FY~~~~~~~~~~~~--------L~~~~P~y~G~~~~~~~~---~~----~~i~LeDLt 87 (286)
T PLN02667 23 VDDSGRFYKPLQDDSRGEREAAFYESFSSDTRVPDH--------IRRFFPVFHGTQLVEASD---GS----GLLVLEDLL 87 (286)
T ss_pred EcCCCcEEeccCCcccchHHHHHHHHHhccccchHH--------HHhhCcccceeEeeccCC---Cc----eeEEehHHh
Confidence 447778899997 6888776655411 0011 235889999998875432 43 379999999
Q ss_pred CCCCcceeEEec
Q 000391 1511 FERNITRQYDLK 1522 (1582)
Q Consensus 1511 ~~~~i~~~yDLK 1522 (1582)
++..---+-|||
T Consensus 88 ~g~~~PcVlDlK 99 (286)
T PLN02667 88 AGYTKPCVMDVK 99 (286)
T ss_pred cCCCCCeEEEEE
Confidence 886444455555
No 54
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=49.44 E-value=33 Score=37.50 Aligned_cols=51 Identities=22% Similarity=0.474 Sum_probs=35.4
Q ss_pred HhhhhccCCeEEEecccccHHHHHHHHHcCCeE-eccCC--H----HHHHHHHHHhCC
Q 000391 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTL-VFDMK--L----HRLERVARCTGS 440 (1582)
Q Consensus 390 V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~v-v~nVK--~----~~LeRIAR~TGA 440 (1582)
+++|++++|||||.......-..+.|.+.||.+ +.... . ..++.+++.+|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 457889999999986655554667899999954 44332 2 346677777765
No 55
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=48.41 E-value=36 Score=32.96 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=38.2
Q ss_pred HHHhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccCCHHHHHHHHHH
Q 000391 388 SVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARC 437 (1582)
Q Consensus 388 ~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nVK~~~LeRIAR~ 437 (1582)
.+.+.|...++++|+|.+ |..-+...|.++||.++.....+.-+-|.+.
T Consensus 44 ~~~~~l~~~~v~~li~~~-iG~~~~~~L~~~gI~v~~~~~~~i~~~l~~~ 92 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICGG-IGEGAFRALKEAGIKVYQGAGGDIEEALEAY 92 (94)
T ss_dssp HHHHHHHHTTESEEEESC-SCHHHHHHHHHTTSEEEESTSSBHHHHHHHH
T ss_pred hHHHHHHHcCCCEEEEeC-CCHHHHHHHHHCCCEEEEcCCCCHHHHHHHH
Confidence 345556668999999965 8999999999999999998666655555443
No 56
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=42.22 E-value=35 Score=40.29 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=40.1
Q ss_pred HhhhhccCCeEEEecccccHHHHHHHHHcCCeEec-cC-----CHHHHHHHHHHhCCc
Q 000391 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVF-DM-----KLHRLERVARCTGSP 441 (1582)
Q Consensus 390 V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~-nV-----K~~~LeRIAR~TGA~ 441 (1582)
+++|++++||+||+....+....+.|.+.||.|+. .. -...++.+++.+|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 56889999999999888877778889999998763 22 123477888888754
No 57
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.75 E-value=46 Score=37.94 Aligned_cols=52 Identities=13% Similarity=0.362 Sum_probs=38.1
Q ss_pred HhhhhccCCeEEEecccccH-HHHHHHHHcCCeEeccC--C----HHHHHHHHHHhCCc
Q 000391 390 MDMIDMCHPNVVLVEKTVSR-DIQESILEKGMTLVFDM--K----LHRLERVARCTGSP 441 (1582)
Q Consensus 390 V~rI~~~~pnVVLveksVs~-~Al~~L~~~gI~vv~nV--K----~~~LeRIAR~TGA~ 441 (1582)
+++|++++|||||+...-.. ...+.|.+.||.++..- . ...++.|++.+|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 56789999999999765444 34788999999876532 2 34478888888875
No 58
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=41.36 E-value=43 Score=33.01 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=34.3
Q ss_pred HHHHhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccCC
Q 000391 387 KSVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK 427 (1582)
Q Consensus 387 ~~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nVK 427 (1582)
..+++.|...++++|+|. +|..-++..|.++||.++.-..
T Consensus 53 ~~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 53 GKAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred hHHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 346666777999999995 6999999999999999997776
No 59
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=40.57 E-value=45 Score=41.05 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=37.8
Q ss_pred HHhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccCC---H----HHHHHHHHHhCC
Q 000391 389 VMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK---L----HRLERVARCTGS 440 (1582)
Q Consensus 389 ~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nVK---~----~~LeRIAR~TGA 440 (1582)
=+++|++++|||||+...-.....+.|.+.||.|+.--. . ..++.|++.+|-
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~ 169 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGN 169 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 367899999999999755555567789999999865321 1 345667777765
No 60
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=35.96 E-value=57 Score=37.29 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=36.1
Q ss_pred HhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccC----CHHHHHHHHHHhCC
Q 000391 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDM----KLHRLERVARCTGS 440 (1582)
Q Consensus 390 V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nV----K~~~LeRIAR~TGA 440 (1582)
+++|++++||+||+...... ..+.|.+.|.+++... =...++++++.+|.
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~ 112 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNK 112 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCc
Confidence 46789999999999877666 6677888886665443 23556777777665
No 61
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=35.31 E-value=64 Score=31.63 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=33.2
Q ss_pred HHHhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccCC
Q 000391 388 SVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK 427 (1582)
Q Consensus 388 ~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nVK 427 (1582)
.....+...++++|+|.+ |..-|...|.++||.++.-..
T Consensus 52 ~~~~~l~~~~v~~vi~~~-iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 52 LAARLLALEGCDAVLVGG-IGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHHCCCcEEEEcc-cCccHHHHHHHcCCEEEEcCC
Confidence 345556678999999985 999999999999999997776
No 62
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.91 E-value=1.8e+02 Score=30.62 Aligned_cols=77 Identities=18% Similarity=0.308 Sum_probs=54.8
Q ss_pred EEcCHHHHHHHHHHcCCChHHHHHHhccc---------------cccc-cCCCCccce----EEEecCCcEEE-------
Q 000391 1393 KCLYANQFRDLRSRCCPSELAYIDSLSRC---------------RNWD-AKGGKSKSF----FVKTLDDRFII------- 1445 (1582)
Q Consensus 1393 k~y~p~~F~~LR~~~gi~~~~yi~SLs~~---------------~~~~-~sgGKSGs~----F~~T~D~rfII------- 1445 (1582)
++|-...|..+-+..++++.++..-+..- ..|. ...||||.+ ||+..+.-|.+
T Consensus 2 rifkt~~F~r~akk~~~sd~~L~~ai~el~~G~~~adLGGgv~K~Ria~~g~GKsGG~R~I~~~~~~~~~~~l~~y~K~~ 81 (120)
T PF06296_consen 2 RIFKTKWFKRWAKKEGLSDDDLCEAIEELEQGLIDADLGGGVRKKRIARKGKGKSGGYRVIYFFKQEDRIFFLYIYAKNE 81 (120)
T ss_pred ceeecHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccchhccEEEEEeccCCCCCCCceEEEEEEEeCCEEEEEEEEcccc
Confidence 56778899999999999998876655321 1132 345899853 44554444444
Q ss_pred -EeccHHHHHHHHHHHHHHHHHHHh
Q 000391 1446 -KEIKKTEFDSFDKFALHYFKYMNE 1469 (1582)
Q Consensus 1446 -Ktis~~E~~~fl~~lp~Yf~y~~~ 1469 (1582)
-.|+..|++.|.+++..|+.+-.+
T Consensus 82 ~~nis~~El~~lk~la~~l~~~~~~ 106 (120)
T PF06296_consen 82 KANISDKELKALKKLAKELLNLSEE 106 (120)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 246899999999999999988665
No 63
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=28.69 E-value=32 Score=37.47 Aligned_cols=52 Identities=25% Similarity=0.347 Sum_probs=29.5
Q ss_pred EEEcCHHH---HHHHHHHcCCChHHHHHHhccccccccCCCCccceEEEecCCcEEEEecc
Q 000391 1392 VKCLYANQ---FRDLRSRCCPSELAYIDSLSRCRNWDAKGGKSKSFFVKTLDDRFIIKEIK 1449 (1582)
Q Consensus 1392 ~k~y~p~~---F~~LR~~~gi~~~~yi~SLs~~~~~~~sgGKSGs~F~~T~D~rfIIKtis 1449 (1582)
++-|||.- =..|..+.++.+-+=+-|+ .-..|+-+++||+|.|+||||=--+
T Consensus 102 vkkYyP~TTnld~~lK~RlnL~EgDPViS~------GDt~GRRaALFYRtSdEr~ill~St 156 (230)
T PF12226_consen 102 VKKYYPGTTNLDQQLKDRLNLTEGDPVISM------GDTTGRRAALFYRTSDERYILLFST 156 (230)
T ss_dssp EEEB-GGG--S-HHHHHHHT--TT-EEEEE------EETT--EEEEEEETTTTEEEEEEEE
T ss_pred hhhcCCCCccHHHHHHHhhccccCCceeee------cCCCCceEEEEEeccCceEEEEEcc
Confidence 77888842 2255656655543222222 3456999999999999999985433
No 64
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=27.73 E-value=1e+02 Score=35.41 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=36.7
Q ss_pred HhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccCC--HH----HHHHHHHHhCCc
Q 000391 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK--LH----RLERVARCTGSP 441 (1582)
Q Consensus 390 V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nVK--~~----~LeRIAR~TGA~ 441 (1582)
+++|++++||+||+......-..+.|.+.+..++.... .. .++.+++.+|..
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~ 115 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKE 115 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcH
Confidence 45789999999999887776555667777766666553 33 466777777653
No 65
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=27.45 E-value=96 Score=36.80 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=4.8
Q ss_pred hHHHHHHHHH
Q 000391 288 SWVDIVTSLS 297 (1582)
Q Consensus 288 ~w~~~ls~L~ 297 (1582)
.|.+.|..++
T Consensus 225 ~~Ld~L~~~~ 234 (275)
T PF13324_consen 225 AQLDKLLDLC 234 (275)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555444443
No 66
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=25.86 E-value=1e+02 Score=34.74 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=38.6
Q ss_pred hhhhccCCeEEEecccc-cHHHHHHHHHcCCeEeccCC-------HHHHHHHHHHhCCc
Q 000391 391 DMIDMCHPNVVLVEKTV-SRDIQESILEKGMTLVFDMK-------LHRLERVARCTGSP 441 (1582)
Q Consensus 391 ~rI~~~~pnVVLveksV-s~~Al~~L~~~gI~vv~nVK-------~~~LeRIAR~TGA~ 441 (1582)
++|++++||+||..... ..-....+.+.||.++.--. ...++.|++.+|..
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 68899999999998888 67777778899998875433 34678888888875
No 67
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=25.41 E-value=1.4e+02 Score=36.34 Aligned_cols=55 Identities=9% Similarity=0.157 Sum_probs=46.5
Q ss_pred HHHhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccCCHHHHHHHHHHhCCcee
Q 000391 388 SVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGSPIL 443 (1582)
Q Consensus 388 ~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nVK~~~LeRIAR~TGA~Ii 443 (1582)
.+++.|+..+|.+|+...+....+ +.|.++||.++..|..-.+-+.+.-.||+++
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~~-~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQA-RALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHHH-HHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 467777788999999988887764 7799999999999988877788888898877
No 68
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=25.12 E-value=1.5e+02 Score=31.18 Aligned_cols=52 Identities=8% Similarity=0.097 Sum_probs=41.1
Q ss_pred HHHhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccCCHHHHHHHHHHhCC
Q 000391 388 SVMDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMKLHRLERVARCTGS 440 (1582)
Q Consensus 388 ~~V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nVK~~~LeRIAR~TGA 440 (1582)
.+.+.|++.|+|+|+| ..|.+-|..+|.++||-++.-....+=+.|-.....
T Consensus 56 ~~a~~l~~~gvdvvi~-~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 56 RIAELLVDEGVDVVIA-SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHHcCCCEEEE-CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 4677788999999998 579999999999999999987775555555544433
No 69
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=23.56 E-value=1.1e+02 Score=35.75 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=33.8
Q ss_pred HhhhhccCCeEEEeccc-ccHHHHHHHHHcCCeEeccC--CH----HHHHHHHHHhCC
Q 000391 390 MDMIDMCHPNVVLVEKT-VSRDIQESILEKGMTLVFDM--KL----HRLERVARCTGS 440 (1582)
Q Consensus 390 V~rI~~~~pnVVLveks-Vs~~Al~~L~~~gI~vv~nV--K~----~~LeRIAR~TGA 440 (1582)
+++|++++|||||+..+ -..-..+.|.+.||.++.-- .. ..++.+++.+|.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999998643 23445577899999887531 11 235556666554
No 70
>PHA02682 ORF080 virion core protein; Provisional
Probab=23.12 E-value=1.2e+02 Score=34.08 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=44.7
Q ss_pred eeeEEecCCCeeEEccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhhHHHHHHHHH
Q 000391 904 TTYNMCVPPQKLEFSNSINKWLKEEFQNVYTKGILLFSEVESSLKQIGSRFVGSTLNLQGSLKEFSVTSEILK 976 (1582)
Q Consensus 904 ~v~ev~lPp~~l~~~~~~~~~l~~E~~~v~~k~~~~f~sV~~rL~~ik~~~~~~~~~~~~~~~~i~eL~~ll~ 976 (1582)
-|+|--+|-..|+-..+..+.+++|+.+|.+....+-.+-.+.+..|..- +..-+..|.+|+.+|.
T Consensus 192 pvle~ripdkv~~~d~~~k~~ikkeladiadsvrdl~aeS~~LtrDIE~A-------KstTq~AIdDLRrLl~ 257 (280)
T PHA02682 192 PVLEPRIPDKIIDADNDDKDLIKKELADIADSVRDLNAESLSLTRDIENA-------KSTTQAAIDDLRRLLT 257 (280)
T ss_pred ccccccCchhhhhcccchHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-------HhhHHHHHHHHHHHHh
Confidence 37888888888888777778899999999888777766666665555531 1112345666666554
No 71
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.96 E-value=95 Score=35.66 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=31.9
Q ss_pred HhhhhccCCeEEEecccccHH-HHHHHHH-cCCeEeccCC-------HHHHHHHHHHhCC
Q 000391 390 MDMIDMCHPNVVLVEKTVSRD-IQESILE-KGMTLVFDMK-------LHRLERVARCTGS 440 (1582)
Q Consensus 390 V~rI~~~~pnVVLveksVs~~-Al~~L~~-~gI~vv~nVK-------~~~LeRIAR~TGA 440 (1582)
+++|++++||+||+....... ..+.|.+ +||.++.--. ...++.+++.+|.
T Consensus 67 ~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~ 126 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLLGKVLGK 126 (262)
T ss_pred HHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHHHHHhCC
Confidence 467899999999997665541 2334544 8888754321 2235566666654
No 72
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=22.96 E-value=1.4e+02 Score=34.58 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=34.0
Q ss_pred HhhhhccCCeEEEecccccHHHHHHHHHcCCeEeccCC-------HHHHHHHHHHhCC
Q 000391 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVFDMK-------LHRLERVARCTGS 440 (1582)
Q Consensus 390 V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~nVK-------~~~LeRIAR~TGA 440 (1582)
+++|++++||||++...-.....+++..++|.++.--. ...++.+++++|-
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~ 122 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGK 122 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCc
Confidence 46789999999998765555556666666766554211 1247777777775
No 73
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=22.25 E-value=95 Score=31.22 Aligned_cols=35 Identities=9% Similarity=0.263 Sum_probs=26.3
Q ss_pred HhhhhccCCeEEEecccccHHHHHHHHHcCCeEec
Q 000391 390 MDMIDMCHPNVVLVEKTVSRDIQESILEKGMTLVF 424 (1582)
Q Consensus 390 V~rI~~~~pnVVLveksVs~~Al~~L~~~gI~vv~ 424 (1582)
++.|++++|||||+.........+.|.+.||.++.
T Consensus 54 ~E~l~~l~pDlvi~~~~~~~~~~~~l~~~~i~~~~ 88 (148)
T cd00636 54 LEKIAALKPDLIIANGSGLEAWLDKLSKIAIPVVV 88 (148)
T ss_pred HHHHhccCCCEEEEecccchhHHHHHHHhCCCEEE
Confidence 34677889999999887766567778888855543
No 74
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=22.25 E-value=83 Score=34.39 Aligned_cols=34 Identities=15% Similarity=0.388 Sum_probs=26.6
Q ss_pred HhhhhccCCeEEEecccccHH-HHHHHHHcCCeEe
Q 000391 390 MDMIDMCHPNVVLVEKTVSRD-IQESILEKGMTLV 423 (1582)
Q Consensus 390 V~rI~~~~pnVVLveksVs~~-Al~~L~~~gI~vv 423 (1582)
+++|++++|||||....-..- ..+.|.+.||.++
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv 96 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVL 96 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEE
Confidence 578899999999986655443 7778999998553
No 75
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=22.09 E-value=49 Score=27.88 Aligned_cols=32 Identities=31% Similarity=0.836 Sum_probs=19.0
Q ss_pred cccccccccccchHHHHhhhccccccccCCCceeeeeecccccc
Q 000391 4 MCHHCGAELTRVKKEERKQENGKSLKLNNEGSIWSCRICGEKQE 47 (1582)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (1582)
.|.+|+|-|-. -.+.+..|..|.|.||+.+.+
T Consensus 4 rC~~C~aylNp------------~~~~~~~~~~w~C~~C~~~N~ 35 (40)
T PF04810_consen 4 RCRRCRAYLNP------------FCQFDDGGKTWICNFCGTKNP 35 (40)
T ss_dssp B-TTT--BS-T------------TSEEETTTTEEEETTT--EEE
T ss_pred ccCCCCCEECC------------cceEcCCCCEEECcCCCCcCC
Confidence 47888887743 235666889999999997653
No 76
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=21.39 E-value=2.3e+02 Score=29.38 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=42.4
Q ss_pred hccCCeEEEecccc------cHHHHHHHHHcCCeEeccCCHHHHHHHHHHhCCc
Q 000391 394 DMCHPNVVLVEKTV------SRDIQESILEKGMTLVFDMKLHRLERVARCTGSP 441 (1582)
Q Consensus 394 ~~~~pnVVLveksV------s~~Al~~L~~~gI~vv~nVK~~~LeRIAR~TGA~ 441 (1582)
...+|++|+|+-++ ++.|.++|.+.++-|+.--.+..|+|.-..-|+.
T Consensus 58 lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~k 111 (121)
T COG1504 58 LEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGKK 111 (121)
T ss_pred HhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhccc
Confidence 34799999998774 6889999999999999999999999999988864
No 77
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.26 E-value=48 Score=30.74 Aligned_cols=31 Identities=26% Similarity=0.815 Sum_probs=23.2
Q ss_pred CcccccccccccchHHHHhhhccccccccCCCceeeeeecccccccc
Q 000391 3 SMCHHCGAELTRVKKEERKQENGKSLKLNNEGSIWSCRICGEKQERE 49 (1582)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (1582)
..|++||....+ +..+..+-|..||...-|.
T Consensus 29 q~C~~CG~~~~~----------------~~~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 29 QTCPRCGHRNKK----------------RRSGRVFTCPNCGFEMDRD 59 (69)
T ss_pred cCccCccccccc----------------ccccceEEcCCCCCEECcH
Confidence 368999987654 4567789999999876554
No 78
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.23 E-value=1.3e+02 Score=36.34 Aligned_cols=51 Identities=16% Similarity=0.350 Sum_probs=36.4
Q ss_pred HhhhhccCCeEEEeccccc-----HHHHHHHHHcCCeEecc------C--CHHHHHHHHHHhCC
Q 000391 390 MDMIDMCHPNVVLVEKTVS-----RDIQESILEKGMTLVFD------M--KLHRLERVARCTGS 440 (1582)
Q Consensus 390 V~rI~~~~pnVVLveksVs-----~~Al~~L~~~gI~vv~n------V--K~~~LeRIAR~TGA 440 (1582)
+++|++++|||||...... .-+.+.|.+.||.++.- + -...++.|++.+|.
T Consensus 84 ~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i~~lg~i~g~ 147 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGR 147 (342)
T ss_pred HHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHHHHHHHHhCC
Confidence 5688999999999875542 34667789999887542 1 13457788888776
No 79
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=21.07 E-value=3.5e+02 Score=29.71 Aligned_cols=72 Identities=19% Similarity=0.231 Sum_probs=41.7
Q ss_pred CCCCcc-ceEEEecCCcEEEEeccHHHHHHHHHHHHHHHHHHHhhccCCCCceeeeeeeEEEEEeecCCCCceeeEEEEE
Q 000391 1427 KGGKSK-SFFVKTLDDRFIIKEIKKTEFDSFDKFALHYFKYMNESFDSGNQTCLAKVLGIYQVTIRQPKSGKEMRHDLMV 1505 (1582)
Q Consensus 1427 sgGKSG-s~F~~T~D~rfIIKtis~~E~~~fl~~lp~Yf~y~~~~~~~n~~TlL~Ki~Gly~i~~~~~~~g~~~k~~~iV 1505 (1582)
++|.++ .+.+.|.+++||||.........-+..--...+++.+. +. -.+++++.....- .....+++
T Consensus 6 ~~G~~n~~~~v~~~~~~~vlK~~~~~~~~~~~~~e~~~~~~l~~~---~~--pvP~~~~~~~~~~-------~~~~~~~~ 73 (239)
T PF01636_consen 6 SGGFSNRVYRVTTDDGRYVLKFYRPPDAAERLRREAAVLRQLAEH---GI--PVPRVLAFDTSDE-------FNGFPYLL 73 (239)
T ss_dssp EESSSSEEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHHHHHT---TS--BS--EEEEEEETE-------ETSEEEEE
T ss_pred CCCCeeeEEEEEECCcEEEEEEeCCCCCHHHHHHHHHHHHHHHhc---CC--CCceEEeeccccc-------ccccceEE
Confidence 467777 44555556699999998773333333333456777763 22 4677776443311 11247899
Q ss_pred EeccC
Q 000391 1506 MENLT 1510 (1582)
Q Consensus 1506 MeNlf 1510 (1582)
|+.+-
T Consensus 74 ~~~i~ 78 (239)
T PF01636_consen 74 MEYIP 78 (239)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 99874
No 80
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=20.94 E-value=76 Score=31.42 Aligned_cols=43 Identities=19% Similarity=0.456 Sum_probs=30.6
Q ss_pred hccCCCCCCCCCChhcceeeeeecCcEEEEEEEecCccccCCCCCCCcEEEeecCCCCCCCCCCCCCCceEEc
Q 000391 776 LNQRKQCASCSELPEAHFYYYARHNKQLTIRVKRLPDRIRLSGEAEGKLWMWSRCGRCKTANGVPKSTKRVVI 848 (1582)
Q Consensus 776 ~~~~~~C~sC~~pm~~H~r~YvH~~g~ltI~Ve~l~~~~~lpge~~~~I~MWs~Ck~C~~~~g~~~sTp~v~M 848 (1582)
..+.|.||.|+.+ .| ++.. -.|| .|.+|+....-+..||.++|
T Consensus 32 ~~~~~~Cp~C~~~--~V---------------kR~a----------~GIW---~C~kCg~~fAGgay~P~t~~ 74 (89)
T COG1997 32 QRAKHVCPFCGRT--TV---------------KRIA----------TGIW---KCRKCGAKFAGGAYTPVTPA 74 (89)
T ss_pred HhcCCcCCCCCCc--ce---------------eeec----------cCeE---EcCCCCCeeccccccccchH
Confidence 5788999999997 22 2221 2488 59999987666777886665
Done!