BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000392
(1581 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d
Length = 354
Score = 143 bits (361), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 94/160 (58%), Gaps = 3/160 (1%)
Query: 302 WNLQVISRSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKT 361
WNL + L + I GV +P +Y GM + FAWH ED +L+S+N+LH G PKT
Sbjct: 152 WNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKT 211
Query: 362 WYAIPGDYAFTFEEVIRNEAYGGDIDRLAALSLLGEKTTLISPEVIAASGIPCCRLVQNP 421
WY +P ++ E + R E + G A L K LISP V+ +GIP R+ Q
Sbjct: 212 WYVVPPEHGQRLERLAR-ELFPGSSRGCGAF--LRHKVALISPTVLKENGIPFNRITQEA 268
Query: 422 GEFVVTFPRAYHAGFSHGFNCGEAANFGTPQWLMVAKEAA 461
GEF+VTFP YHAGF+HGFNC EA NF TP+W+ K A+
Sbjct: 269 GEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMAS 308
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 23 VFYPTDTEFADPIAYISRIEKE-ASAFGICKIVPP 56
+F+PT EF D YI+ +E + A G+ KI+PP
Sbjct: 20 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPP 54
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And
N- Oxalylglycine
Length = 337
Score = 143 bits (360), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 94/160 (58%), Gaps = 3/160 (1%)
Query: 302 WNLQVISRSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKT 361
WNL + L + I GV +P +Y GM + FAWH ED +L+S+N+LH G PKT
Sbjct: 145 WNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKT 204
Query: 362 WYAIPGDYAFTFEEVIRNEAYGGDIDRLAALSLLGEKTTLISPEVIAASGIPCCRLVQNP 421
WY +P ++ E + R E + G A L K LISP V+ +GIP R+ Q
Sbjct: 205 WYVVPPEHGQRLERLAR-ELFPGSSRGCGAF--LRHKVALISPTVLKENGIPFNRITQEA 261
Query: 422 GEFVVTFPRAYHAGFSHGFNCGEAANFGTPQWLMVAKEAA 461
GEF+VTFP YHAGF+HGFNC EA NF TP+W+ K A+
Sbjct: 262 GEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMAS 301
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 23 VFYPTDTEFADPIAYISRIEKE-ASAFGICKIVPP 56
+F+PT EF D YI+ +E + A G+ KI+PP
Sbjct: 13 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPP 47
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
pdb|4HON|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
Length = 330
Score = 143 bits (360), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 94/160 (58%), Gaps = 3/160 (1%)
Query: 302 WNLQVISRSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKT 361
WNL + L + I GV +P +Y GM + FAWH ED +L+S+N+LH G PKT
Sbjct: 141 WNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKT 200
Query: 362 WYAIPGDYAFTFEEVIRNEAYGGDIDRLAALSLLGEKTTLISPEVIAASGIPCCRLVQNP 421
WY +P ++ E + R E + G A L K LISP V+ +GIP R+ Q
Sbjct: 201 WYVVPPEHGQRLERLAR-ELFPGSSRGCGAF--LRHKVALISPTVLKENGIPFNRITQEA 257
Query: 422 GEFVVTFPRAYHAGFSHGFNCGEAANFGTPQWLMVAKEAA 461
GEF+VTFP YHAGF+HGFNC EA NF TP+W+ K A+
Sbjct: 258 GEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMAS 297
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 23 VFYPTDTEFADPIAYISRIEKE-ASAFGICKIVPP 56
+F+PT EF D YI+ +E + A G+ KI+PP
Sbjct: 9 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPP 43
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
pdb|4HOO|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
Length = 330
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 94/160 (58%), Gaps = 3/160 (1%)
Query: 302 WNLQVISRSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKT 361
WNL + L + I GV +P +Y GM + FAWH ED +L+S+N+LH G PKT
Sbjct: 141 WNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKT 200
Query: 362 WYAIPGDYAFTFEEVIRNEAYGGDIDRLAALSLLGEKTTLISPEVIAASGIPCCRLVQNP 421
WY +P ++ E + R E + G A L K LISP V+ +GIP R+ Q
Sbjct: 201 WYVVPPEHGQRLERLAR-ELFPGSSRGCGAF--LRHKVALISPTVLKENGIPFNRITQEA 257
Query: 422 GEFVVTFPRAYHAGFSHGFNCGEAANFGTPQWLMVAKEAA 461
GEF+VTFP YHAGF+HGFNC EA NF TP+W+ K A+
Sbjct: 258 GEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMAS 297
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 23 VFYPTDTEFADPIAYISRIEKE-ASAFGICKIVPP 56
+F+PT EF D YI+ +E + A G+ KI+PP
Sbjct: 9 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPP 43
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|B Chain B, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|C Chain C, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
Length = 358
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 104/179 (58%), Gaps = 10/179 (5%)
Query: 283 VTGSNDVEGTAGWKLSNSPWNLQVISRSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWH 342
++GS E T W L + L ++ + G + I GV +P +Y GM + FAWH
Sbjct: 159 ISGSLFEESTKQWNLGHLGTILDLLEQECGVV-------IEGVNTPYLYFGMWKTTFAWH 211
Query: 343 VEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEAYGGDIDRLAALSLLGEKTTLI 402
ED +L+S+N+LH G PKTWY +P ++ E + R E + DI R + L K LI
Sbjct: 212 TEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLAR-ELFP-DISR-GCEAFLRHKVALI 268
Query: 403 SPEVIAASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANFGTPQWLMVAKEAA 461
SP V+ +GIP + Q GEF+VTFP YHAGF+HGFNC EA NF TP+W+ K A+
Sbjct: 269 SPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMAS 327
Score = 33.9 bits (76), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 23 VFYPTDTEFADPIAYISRIEKE-ASAFGICKIVPP 56
FYPT EFAD Y++ +E + A G+ K++PP
Sbjct: 39 TFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPP 73
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain
pdb|2XML|B Chain B, Crystal Structure Of Human Jmjd2c Catalytic Domain
Length = 348
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 101/184 (54%), Gaps = 18/184 (9%)
Query: 283 VTGSNDVEGTAGWKLSNSPWNLQVISRSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWH 342
+ GS EG W ++ L V+ G I GV +P +Y GM + FAWH
Sbjct: 139 INGSIYDEGVDEWNIARLNTVLDVVEEECGI-------SIEGVNTPYLYFGMWKTTFAWH 191
Query: 343 VEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIR----NEAYGGDIDRLAALSLLGEK 398
ED +L+S+N+LH G PK+WYAIP ++ E + + + + G D + L K
Sbjct: 192 TEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAQGFFPSSSQGCD-------AFLRHK 244
Query: 399 TTLISPEVIAASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANFGTPQWLMVAK 458
TLISP V+ GIP ++ Q GEF++TFP YHAGF+HGFNC E+ NF T +W+ K
Sbjct: 245 MTLISPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATVRWIDYGK 304
Query: 459 EAAV 462
A +
Sbjct: 305 VAKL 308
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ6|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ7|A Chain A, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OQ7|B Chain B, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OS2|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OS2|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OT7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OT7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OX0|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2OX0|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2VD7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|2VD7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|3NJY|A Chain A, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|3NJY|B Chain B, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|2YBP|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBP|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|A Chain A, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|B Chain B, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|3PDQ|A Chain A, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|3PDQ|B Chain B, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|2YBK|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|2YBK|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|3U4S|A Chain A, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3U4S|B Chain B, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3RVH|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|3RVH|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4AI9|A Chain A, Jmjd2a Complexed With Daminozide
pdb|4AI9|B Chain B, Jmjd2a Complexed With Daminozide
Length = 381
Score = 134 bits (337), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Query: 322 IPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEA 381
I GV +P +Y GM + FAWH ED +L+S+N+LH G PK+WY++P ++ E + +
Sbjct: 190 IEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKG-F 248
Query: 382 YGGDIDRLAALSLLGEKTTLISPEVIAASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFN 441
+ G A L K TLISP ++ GIP ++ Q GEF++TFP YHAGF+HGFN
Sbjct: 249 FPGSAQSCEAF--LRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFN 306
Query: 442 CGEAANFGTPQWLMVAKEAAV 462
C E+ NF T +W+ K+A +
Sbjct: 307 CAESTNFATRRWIEYGKQAVL 327
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 23 VFYPTDTEFADPIAYISRIEKE-ASAFGICKIVPP 56
FYPT EF + YI+ IE + A G+ K+VPP
Sbjct: 38 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPP 72
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2P5B|B Chain B, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2Q8C|A Chain A, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8C|B Chain B, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8D|A Chain A, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8D|B Chain B, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8E|A Chain A, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
pdb|2Q8E|B Chain B, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
Length = 352
Score = 134 bits (336), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Query: 322 IPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEA 381
I GV +P +Y GM + FAWH ED +L+S+N+LH G PK+WY++P ++ E + +
Sbjct: 170 IEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKG-F 228
Query: 382 YGGDIDRLAALSLLGEKTTLISPEVIAASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFN 441
+ G A L K TLISP ++ GIP ++ Q GEF++TFP YHAGF+HGFN
Sbjct: 229 FPGSAQSCEAF--LRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFN 286
Query: 442 CGEAANFGTPQWLMVAKEAAV 462
C E+ NF T +W+ K+A +
Sbjct: 287 CAESTNFATRRWIEYGKQAVL 307
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 23 VFYPTDTEFADPIAYISRIEKE-ASAFGICKIVPP 56
FYPT EF + YI+ IE + A G+ K+VPP
Sbjct: 18 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPP 52
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP3|B Chain B, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP5|A Chain A, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
pdb|2GP5|B Chain B, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
Length = 349
Score = 134 bits (336), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Query: 322 IPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEA 381
I GV +P +Y GM + FAWH ED +L+S+N+LH G PK+WY++P ++ E + +
Sbjct: 167 IEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKG-F 225
Query: 382 YGGDIDRLAALSLLGEKTTLISPEVIAASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFN 441
+ G A L K TLISP ++ GIP ++ Q GEF++TFP YHAGF+HGFN
Sbjct: 226 FPGSAQSCEAF--LRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFN 283
Query: 442 CGEAANFGTPQWLMVAKEAAV 462
C E+ NF T +W+ K+A +
Sbjct: 284 CAESTNFATRRWIEYGKQAVL 304
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 23 VFYPTDTEFADPIAYISRIEKE-ASAFGICKIVPP 56
FYPT EF + YI+ IE + A G+ K+VPP
Sbjct: 15 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPP 49
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
pdb|2PXJ|B Chain B, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
Length = 347
Score = 133 bits (335), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Query: 322 IPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEA 381
I GV +P +Y GM + FAWH ED +L+S+N+LH G PK+WY++P ++ E + +
Sbjct: 167 IEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKG-F 225
Query: 382 YGGDIDRLAALSLLGEKTTLISPEVIAASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFN 441
+ G A L K TLISP ++ GIP ++ Q GEF++TFP YHAGF+HGFN
Sbjct: 226 FPGSAQSCEAF--LRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFN 283
Query: 442 CGEAANFGTPQWLMVAKEAAV 462
C E+ NF T +W+ K+A +
Sbjct: 284 CAESTNFATRRWIEYGKQAVL 304
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 23 VFYPTDTEFADPIAYISRIEKE-ASAFGICKIVPP 56
FYPT EF + YI+ IE + A G+ K+VPP
Sbjct: 15 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPP 49
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a
pdb|2WWJ|B Chain B, Structure Of Jmjd2a Complexed With Inhibitor 10a
Length = 348
Score = 133 bits (335), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Query: 322 IPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEA 381
I GV +P +Y GM + FAWH ED +L+S+N+LH G PK+WY++P ++ E + +
Sbjct: 162 IEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKG-F 220
Query: 382 YGGDIDRLAALSLLGEKTTLISPEVIAASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFN 441
+ G A L K TLISP ++ GIP ++ Q GEF++TFP YHAGF+HGFN
Sbjct: 221 FPGSAQSCEAF--LRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFN 278
Query: 442 CGEAANFGTPQWLMVAKEAAV 462
C E+ NF T +W+ K+A +
Sbjct: 279 CAESTNFATRRWIEYGKQAVL 299
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 23 VFYPTDTEFADPIAYISRIEKE-ASAFGICKIVPP 56
FYPT EF + YI+ IE + A G+ K+VPP
Sbjct: 10 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPP 44
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With
A-Ketoglutarate
pdb|3OPW|A Chain A, Crystal Structure Of The Rph1 Catalytic Core
Length = 373
Score = 123 bits (308), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 303 NLQVISRSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTW 362
N+ +++ P L M +PGV +Y G+ + F+WH+ED +L+S+N++H GAPK W
Sbjct: 197 NVWNVAKLPNILDH-METKVPGVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQW 255
Query: 363 YAIPGDYAFTFEEVIRNEAYGGDIDRLAALSLLGEKTTLISPEVIAASGIPCCRLVQNPG 422
Y+IP + F F + ++ E + + L K L SP+++ +GI C +V + G
Sbjct: 256 YSIPQEDRFKFYKFMQ-EQFPEEAKNCP--EFLRHKMFLASPKLLQENGIRCNEIVHHEG 312
Query: 423 EFVVTFPRAYHAGFSHGFNCGEAANFGTPQWLMVAKEAA 461
EF++T+P YHAGF++G+N E+ NF +WL + K+A
Sbjct: 313 EFMITYPYGYHAGFNYGYNLAESVNFALEEWLPIGKKAG 351
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 21 APVFYPTDTEFADPIAYISRIEKEASAFGICKIVPP 56
PVF PT +F D AY I K G+ K++PP
Sbjct: 14 VPVFKPTYEQFEDFYAYCKAINKYGMKSGVVKVIPP 49
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 70.1 bits (170), Expect = 9e-12, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 1468 CDLDGCRMSFETKRELSLHKRNRCPH----EGCGKRFSSHKYAIIHQRVHDDERPLKCPW 1523
C GC F + H P CGK F HQ VH E+P +C +
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF 67
Query: 1524 KGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRH 1569
+GC F + H+R+HTG+RPY C F+GC F +++ H
Sbjct: 68 EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
CPH+GC K F + H H P C +F + H VHTGE+P++
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTHG---PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 1551 CKFEGCGLSFRFVSDISRHRR 1571
C FEGCG F ++ H R
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVR 85
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 1476 SFETKRELSLH---KRNRCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKW 1532
S + KR +H K +C EGCGKRFS H R+H +RP CP+ GC+ F
Sbjct: 47 SSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 106
Query: 1533 AWARTEHIRVH 1543
+ HI H
Sbjct: 107 STNLKSHILTH 117
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 1468 CDLDGCRMSFETKRELSLH----------KRNRCPHEGCGKR---FSSHKYAIIHQRVHD 1514
C DGC F+++ +L H K C GC + F + ++H R H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 1515 DERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKT 1573
E+P KC ++GC S+ H+R HTGE+PY C+ EGC +F SD ++H+ +T
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 1468 CDLDGCRMS---FETKRELSLHKR-------NRCPHEGCGKRFSSHKYAIIHQRVHDDER 1517
C GC F+ + L +H R ++C EGC K +S + H R H E+
Sbjct: 37 CHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEK 96
Query: 1518 PLKCPWKGCSMSFKWAWARTEHI-RVHTGERPYKCKFEGCGLSFRFVSDISRH 1569
P C +GCS +F A R +H R H+ E+PY CK GC + S + +H
Sbjct: 97 PYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTE----HIRVHTGE 1546
CP EG K F + + H RVH E+P CP+ GC F AR+E H R HTGE
Sbjct: 65 CPREG--KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIF----ARSENLKIHKRTHTGE 118
Query: 1547 RPYKCKFEGCGLSFRFVSDISRH 1569
+P+KC+FEGC F SD +H
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKH 141
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 1476 SFETKRELSLHKRNR-------CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSM 1528
SF+ K +L H R CP GCGK F+ + IH+R H E+P KC ++GC
Sbjct: 71 SFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDR 130
Query: 1529 SFKWAWARTEHIRVHTGER 1547
F + R +H+ VHT ++
Sbjct: 131 RFANSSDRKKHMHVHTSDK 149
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 1492 PHEGCGKRFSSHKYAIIHQRVHDDERPLK----CPWKGC---SMSFKWAWARTEHIRVHT 1544
P + C + FS+ + H + P + C W+ C SFK + HIRVHT
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 1545 GERPYKCKFEGCGLSFRFVSDISRHRR 1571
GE+P+ C F GCG F ++ H+R
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKR 113
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To
Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound To
Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound To
Dna
Length = 87
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 1490 RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPY 1549
+CP CGK FS HQR H E+P KCP C SF + +H R HTGE+PY
Sbjct: 6 KCPE--CGKSFSQSSNLQKHQRTHTGEKPYKCPE--CGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 1550 KCKFEGCGLSFRFVSDISRHRR 1571
KC CG SF +SRH+R
Sbjct: 62 KC--PECGKSFSRSDHLSRHQR 81
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To
Its Target Dna
Length = 90
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
C + GCGK ++ + H R H E+P C W GC F + T H R HTG RP++
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 1551 CKFEGCGLSFRFVSDISRHRRK 1572
C + C +F ++ H ++
Sbjct: 69 C--QKCDRAFSRSDHLALHMKR 88
Score = 43.5 bits (101), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 1466 HRCDLDGCRMSFETKRELSLHKRNR-------CPHEGCGKRFSSHKYAIIHQRVHDDERP 1518
H CD GC ++ L H R C +GCG +F+ H R H RP
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 1519 LKCPWKGCSMSFKWAWARTEHIRVH 1543
+C + C +F +R++H+ +H
Sbjct: 67 FQC--QKCDRAF----SRSDHLALH 85
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To
Its Target Dna
Length = 89
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
C + GCGK ++ + H R H E+P C W GC F + T H R HTG RP++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 1551 CKFEGCGLSFRFVSDISRHRRK 1572
C + C +F ++ H ++
Sbjct: 68 C--QKCDRAFSRSDHLALHMKR 87
Score = 43.5 bits (101), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 1466 HRCDLDGCRMSFETKRELSLHKRNR-------CPHEGCGKRFSSHKYAIIHQRVHDDERP 1518
H CD GC ++ L H R C +GCG +F+ H R H RP
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 1519 LKCPWKGCSMSFKWAWARTEHIRVH 1543
+C + C +F +R++H+ +H
Sbjct: 66 FQC--QKCDRAF----SRSDHLALH 84
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 1496 CGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEG 1555
CGK FS + HQR H E+P KCP C SF T H R HTGE+PYKC
Sbjct: 27 CGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTGEKPYKC--PE 82
Query: 1556 CGLSFRFVSDISRHRR 1571
CG SF +++ H+R
Sbjct: 83 CGKSFSQRANLRAHQR 98
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 1473 CRMSFETKRELSLHKRNR-------CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKG 1525
C SF + L H+R CP CGK FS + HQR H E+P KCP
Sbjct: 83 CGKSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHLRAHQRTHTGEKPYKCPE-- 138
Query: 1526 CSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 1571
C SF H R HTGE+PYKC CG SF ++ H+R
Sbjct: 139 CGKSFSREDNLHTHQRTHTGEKPYKC--PECGKSFSRRDALNVHQR 182
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 1473 CRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKG 1525
C SF L H+R +CP CGK FS HQR H E+P KCP
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLHTHQRTHTGEKPYKCPE-- 166
Query: 1526 CSMSFKWAWARTEHIRVHTGER 1547
C SF A H R HTG++
Sbjct: 167 CGKSFSRRDALNVHQRTHTGKK 188
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 1468 CDLDGCRMSFETKRELSLHKRNR----------CPHEGCGKRFSSHKYAIIHQRVHDDER 1517
CD DGC + F TK + H NR C E CGK F H +HQ H +
Sbjct: 75 CDSDGCDLRFTTKANMKKH-FNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQL 133
Query: 1518 PLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCK 1552
P +CP +GC F H +VH G Y CK
Sbjct: 134 PYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCK 165
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 1485 LHKRNRCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHT 1544
++KR C CG ++ + H H E+P C +GC F T H HT
Sbjct: 9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 68
Query: 1545 GERPYKCKFEGCGLSFRFVSDISRH 1569
GE+ + C +GC L F +++ +H
Sbjct: 69 GEKNFTCDSDGCDLRFTTKANMKKH 93
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Query: 1468 CDLDGCRMSFETKRELSLH-------KRNRCPHEGCGKRFSSHKYAIIH-QRVHDDERPL 1519
C +GC F + L+ H K C +GC RF++ H R H+ + +
Sbjct: 45 CKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV 104
Query: 1520 K-CPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHY 1576
C ++ C +FK H HT + PY+C EGC F S + RH + Y
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 162
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 58.2 bits (139), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
CP E C +RFS H R+H ++P +C + C +F +HIR HTGE+P+
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 1551 CKFEGCGLSFRFVSDISRHRR 1571
C CG F + RH +
Sbjct: 65 CDI--CGRKFATLHTRDRHTK 83
Score = 43.5 bits (101), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 1571
ERP CP + C F HIR+HTG++P++C+ C +F + +++H R
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQHTGLNQHIR 55
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 58.2 bits (139), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
CP E C +RFS H R+H ++P +C + C +F + HIR HTGE+P+
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 1551 CKFEGCGLSFRFVSDISRHRR 1571
C CG F + +RH +
Sbjct: 65 CDI--CGRKFATLHTRTRHTK 83
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 1571
ERP CP + C F HIR+HTG++P++C+ C +F + ++ H R
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQQASLNAHIR 55
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
C + GC K ++ + H R H E+P KC W+GC F + T H R HTG +P++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 1551 CKFEGCGLSFRFVSDISRHRRK 1572
C C SF ++ H ++
Sbjct: 78 CGV--CNRSFSRSDHLALHMKR 97
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
CP E C +RFS H R+H ++P +C + C +F + T HIR HTGE+P+
Sbjct: 7 CPVESCDRRFSDSSNLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 1551 CKFEGCGLSFRFVSDISRH 1569
C CG F + RH
Sbjct: 65 CDI--CGRKFARSDERKRH 81
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCK 1552
ERP CP + C F + T HIR+HTG++P++C+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCR 38
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
CP E C +RFS H R+H ++P +C + C +F + T HIR HTGE+P+
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 1551 CKFEGCGLSFRFVSDISRH 1569
C CG F + RH
Sbjct: 65 CDI--CGRKFARSDERKRH 81
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCK 1552
ERP CP + C F + + T HIR+HTG++P++C+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCR 38
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
CP E C +RFS H R+H ++P +C + C +F + T HIR HTGE+P+
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 1551 CKFEGCGLSFRFVSDISRH 1569
C CG F + RH
Sbjct: 65 CDI--CGRKFARSDERKRH 81
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCK 1552
ERP CP + C F + T HIR+HTG++P++C+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR 38
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
CP E C +RFS H R+H ++P +C + C +F + T HIR HTGE+P+
Sbjct: 7 CPVESCDRRFSRSAELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 1551 CKFEGCGLSFRFVSDISRH 1569
C + CG F + RH
Sbjct: 65 C--DICGRKFARSDERKRH 81
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCK 1552
ERP CP + C F + T HIR+HTG++P++C+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCR 38
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
CP E C +RFS H R+H ++P +C + C +F + T HIR HTGE+P+
Sbjct: 7 CPVESCDRRFSRSADLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 1551 CKFEGCGLSFRFVSDISRH 1569
C + CG F + RH
Sbjct: 65 C--DICGRKFARSDERKRH 81
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCK 1552
ERP CP + C F + T HIR+HTG++P++C+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCR 38
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
CP E C +RFS H R+H ++P +C + C +F + T HIR HTGE+P+
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 1551 CKFEGCGLSFRFVSDISRH 1569
C CG F + RH
Sbjct: 64 CDI--CGRKFARSDERKRH 80
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCK 1552
ERP CP + C F + T HIR+HTG++P++C+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR 37
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 51.6 bits (122), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 1487 KRNRCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGE 1546
KR C CG ++ + H H E+P C +GC F T H HTGE
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 1547 RPYKCKFEGCGLSFRFVSDISRH 1569
+ + C +GC L F +++ +H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268-
Dna Complex At 2.1 Angstroms
Length = 87
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
CP E C +RFS H R+H ++P +C + C +F + T HIR HTGE+P+
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 1551 CKFEGCGLSFRFVSDISRH 1569
C CG F + RH
Sbjct: 65 CDI--CGRKFARSDERKRH 81
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCK 1552
ERP CP + C F + T HIR+HTG++P++C+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR 38
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 1496 CGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEG 1555
CGK F H +H D RP C + C F +H +HTGE+P+KC+
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQV-- 62
Query: 1556 CGLSFRFVSDISRHRRK 1572
CG +F S++ H RK
Sbjct: 63 CGKAFSQSSNLITHSRK 79
Score = 37.0 bits (84), Expect = 0.089, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 1524 KGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRH 1569
K C SFK + + H+ +H+ RPY C++ CG F SD+ +H
Sbjct: 5 KICGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKH 48
Score = 35.8 bits (81), Expect = 0.21, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 1469 DLDGCRMSFETKRELSLH-----KRNRCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPW 1523
D C SF+ LS H P + CGKRF H +H E+P KC
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC-- 60
Query: 1524 KGCSMSFKWAWARTEHIRVHTG 1545
+ C +F + H R HTG
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger
Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger
Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger
Domain Bound To Dna
Length = 119
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 1468 CDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLK 1520
C GC + L +H R +C + C +RFS HQR H +P +
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ 68
Query: 1521 CPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRH 1569
C K C F + H R HTGE+P+ C++ C F ++ RH
Sbjct: 69 C--KTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 1515 DERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRH-RRKT 1573
++RP C + GC+ + H R HTGE+PY+C F+ C F + RH RR T
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 1574 G 1574
G
Sbjct: 63 G 63
Score = 37.4 bits (85), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 1466 HRCDLDGCRMSFETKRELSLHKRNRCPHEG--------CGKRFSSHKYAIIHQRVHDDER 1517
++CD C F +L H+R H G C ++FS + H R H E+
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRR---HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
Query: 1518 PLKCPWKGCSMSF 1530
P C W C F
Sbjct: 94 PFSCRWPSCQKKF 106
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
C E CGK F H +HQ H + P +CP +GC F H +VH G Y
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YP 60
Query: 1551 CK 1552
CK
Sbjct: 61 CK 62
Score = 37.0 bits (84), Expect = 0.090, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 1521 CPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHY 1576
C ++ C +FK H HT + PY+C EGC F S + RH + Y
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex Reveals
Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex Reveals
Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex Reveals
Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s Rrna
55mer (Nmr Structure)
Length = 87
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
C E CGK F H +HQ H + P +CP +GC F H +VH G Y
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YP 60
Query: 1551 CK 1552
CK
Sbjct: 61 CK 62
Score = 37.0 bits (84), Expect = 0.096, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 1521 CPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHY 1576
C ++ C +FK H HT + PY+C EGC F S + RH + Y
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 1496 CGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEG 1555
CG+ F+ +IH+R H DERP C C +F+ +H +H+ E+P+KC +
Sbjct: 23 CGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSKEKPFKC--QE 78
Query: 1556 CGLSF 1560
CG F
Sbjct: 79 CGKGF 83
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRV-HDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPY 1549
C GCG+ FS+ +Y H++ H ++ CP C SF + EH+++H+ R Y
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 1550 KCKFEG 1555
C+F G
Sbjct: 70 ICEFSG 75
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 1468 CDLDGCRMSFETKRELSLHKRNR--------CPHEGCGKRFSSHKYAIIHQRVHDDERPL 1519
CD GC F ++ L+ HK+ + CP CGK F+ K+ H ++H D R
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 1520 KCPWKG 1525
C + G
Sbjct: 70 ICEFSG 75
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVH 1543
C H GCGK + + H R H E+P C WKGC F + + H R H
Sbjct: 20 CSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 1521 CPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 1571
C GC ++ + H R HTGE+P+ C ++GC F ++SRHRR
Sbjct: 20 CSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding
Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2
Length = 96
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 1492 PH--EGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPY 1549
PH E CGK FS H R H +P KC K C + + + +H+R+H+ ERP+
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 1550 KCKFEGCGLSFRFVSDISRHRR 1571
KC+ C + R S ++ H R
Sbjct: 66 KCQI--CPYASRNSSQLTVHLR 85
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 1517 RPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKF 1553
RP CP + C F + T HIR+HTG++P++C+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI 54
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHT 1544
CP E C +RFS H R+H ++P +C + C +F + T HIR HT
Sbjct: 22 CPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHT 73
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 1571
++P KC C SF++ H VHTGE+PY+C CG F +++ H R
Sbjct: 15 DKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTR 66
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 1509 HQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERP 1548
H+ VH E+P +C C F H R+H+GE+P
Sbjct: 36 HKTVHTGEKPYRC--NICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats
Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 33/108 (30%)
Query: 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKG------------------------- 1525
CP C K+F S Y +H R H E+P +CP G
Sbjct: 10 CP--TCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 1526 ----CSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRH 1569
C +F+ H+ HTGE PYKC C F D+ H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKC--SSCSQQFMQKKDLQSH 113
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 1496 CGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHT 1544
CGK FS + HQRVH E+P KC C +F H R+HT
Sbjct: 20 CGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLINHQRIHT 66
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 1571
E+P C C +F + +H RVHTGE+PYKC E CG +F S + H+R
Sbjct: 12 EKPYGCVE--CGKAFSRSSILVQHQRVHTGEKPYKC-LE-CGKAFSQNSGLINHQR 63
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 38.1 bits (87), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 1517 RPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHR 1570
+P +C + C +F + T HIR HTGE+P+ C CG F + RHR
Sbjct: 2 KPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHR 51
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 38.1 bits (87), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 1496 CGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEG 1555
CGK F+ H +H RP C C FK H+++HTG +PY+C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYECNI-- 70
Query: 1556 CGLSFRFVSDISRH 1569
C F + RH
Sbjct: 71 CAKRFMWRDSFHRH 84
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 1496 CGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGE--RPYKCKF 1553
CGK F + H+ H E+P CP C + FK + H+R H G +PY C+
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYICQS 70
Query: 1554 EGCGLS 1559
G G S
Sbjct: 71 CGKGFS 76
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein Mbp-1
Length = 57
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 1526 CSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGH 1575
C + K +HIR HT RPY C + C SF+ ++++H + H
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMKSKAH 54
Score = 30.4 bits (67), Expect = 7.5, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 1494 EGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIR 1541
E CG R H R H D RP C + C+ SFK T+H++
Sbjct: 5 EECGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMK 50
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain In
Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 1509 HQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISR 1568
H +H E+ K P + C F A RT+H HTGER Y+C CG SF +S
Sbjct: 41 HFNIHSWEK--KYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL--ACGKSFINYQFMSS 96
Query: 1569 H 1569
H
Sbjct: 97 H 97
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 775-
807) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 1496 CGKRFSSHKYAIIHQRVHDDERP 1518
CGK FSS Y IIH R H E+P
Sbjct: 18 CGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRH 1569
ERP C + C +++ A + H R H G RP C CG FR S+++RH
Sbjct: 2 ERPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSC--PECGKCFRDQSEVNRH 51
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 301-
331) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 1496 CGKRFSSHKYAIIHQRVHDDER 1517
CGK FSS Y I+HQR+H E+
Sbjct: 16 CGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 367-
399) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERP 1548
E+P C K C SF+WA +H RVH+GE+P
Sbjct: 10 EKPYNC--KECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 35.0 bits (79), Expect = 0.33, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 1526 CSMSFKWAWARTEHIRVHTGERPYKCKF 1553
C F+ + H+R HTGE+PYKC+F
Sbjct: 10 CGKFFRSNYYLNIHLRTHTGEKPYKCEF 37
Score = 34.7 bits (78), Expect = 0.47, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 1496 CGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYK 1550
CGK F S+ Y IH R H E+P KC + C ++A A+ +R H ER +K
Sbjct: 10 CGKFFRSNYYLNIHLRTHTGEKPYKCEF--C----EYAAAQKTSLRYHL-ERHHK 57
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of
Zinc Finger Protein 435
Length = 77
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 1526 CSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSD-ISRHRRKTG 1574
C SF + ++H R HTGE+PYKC + CG +F S I HR TG
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTG 71
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 1496 CGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERP 1548
CGK FS H+R H E+P KC C +F H RVHTG P
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 528-
560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERP 1548
E+P KC C SF++ + T H R+HTGE+P
Sbjct: 10 EKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 693-
723) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 1496 CGKRFSSHKYAIIHQRVHDDERP 1518
CGK F S Y IIH R H E+P
Sbjct: 16 CGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 584-
616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERP 1548
E+P KC K C +F+ H+R+HTGE+P
Sbjct: 10 EKPFKC--KECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 1546 ERPYKCKFEGCGLSFRFVSDISRHRR 1571
E+P+ C + GCG F ++SRHRR
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRR 35
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 719-
751) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 1492 PHEG--CGKRFSSHKYAIIHQRVHDDERP 1518
PHE CGK FS + I+HQR+H E P
Sbjct: 12 PHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2IDB|A Chain A, Crystal Structure Of 3-Octaprenyl-4-Hydroxybenzoate
Decarboxylase (Ubid) From Escherichia Coli, Northeast
Structural Genomics Target Er459.
pdb|2IDB|B Chain B, Crystal Structure Of 3-Octaprenyl-4-Hydroxybenzoate
Decarboxylase (Ubid) From Escherichia Coli, Northeast
Structural Genomics Target Er459.
pdb|2IDB|C Chain C, Crystal Structure Of 3-Octaprenyl-4-Hydroxybenzoate
Decarboxylase (Ubid) From Escherichia Coli, Northeast
Structural Genomics Target Er459
Length = 505
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 520 VEDILKENNILSVLLGRQSTFNAVLWNADLLPCQSKESQMPSANETV---STTPGETVPN 576
V D L E +L G ++ +++ C S + ++P++ E V GET P
Sbjct: 235 VPDTLSEYAFAGLLRGTKT---------EVVKCISNDLEVPASAEIVLEGYIEQGETAPE 285
Query: 577 NPYEKHNDHNNLLDEMNVY 595
PY H + N +D V+
Sbjct: 286 GPYGDHTGYYNEVDSFPVF 304
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 273-
303) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 1496 CGKRFSSHKYAIIHQRVHDDERP 1518
C K FSS Y ++HQ+ H +E+P
Sbjct: 16 CEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 369-
401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERP 1548
E+P KC C S+ T+H RVHTGE+P
Sbjct: 10 EKPFKCGE--CGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 479-
511) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 1494 EGCGKRFSSHKYAIIHQRVHDDERP 1518
E CGKRF+ + + HQRVH E+P
Sbjct: 16 EECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 668-
700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 1496 CGKRFSSHKYAIIHQRVHDDERP 1518
CGK FS + I HQRVH E+P
Sbjct: 18 CGKAFSQTTHLIQHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERP 1548
E+P +C K C +F +H RVHTGE+P
Sbjct: 10 EKPYEC--KECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 463-
495) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 1496 CGKRFSSHKYAIIHQRVHDDERP 1518
CGK F+ IIHQ++H ERP
Sbjct: 18 CGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 1492 PHEGCGKRFSSHKYAIIHQRVHDDERPLK----CPWKGC---SMSFKWAWARTEHIRVHT 1544
P + C + FS+ + H + P + C W+ C SFK + HIRVHT
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 1545 GER 1547
GE+
Sbjct: 87 GEK 89
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 329-
359) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 1496 CGKRFSSHKYAIIHQRVHDDERP 1518
C K FS H +IHQR+H E P
Sbjct: 16 CRKTFSFHSQLVIHQRIHTGENP 38
>pdb|1YZS|A Chain A, Solution Structure Of Human Sulfiredoxin (Srx)
pdb|2B6F|A Chain A, Solution Structure Of Human Sulfiredoxin (Srx)
Length = 121
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 943 PDGTGNSGSISAGSIHSPIGMSEGLHDIPVREATSNLSLNYSPSRVADSLATATLVVDSI 1002
P+G G SG GSIHS G +H++P+ L P++V + T DS+
Sbjct: 3 PEGPGPSGGAQGGSIHS--GRIAAVHNVPLSVLIRPLPSVLDPAKVQSLVDTIREDPDSV 60
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 544-
576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 1516 ERPLKCPWKGCSMSFKWAWARTEHIRVHTGERP 1548
ERP KC C SF + +H R+HTGE+P
Sbjct: 10 ERPHKC--NECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2HZ6|A Chain A, The Crystal Structure Of Human Ire1-Alpha Luminal Domain
Length = 369
Score = 30.4 bits (67), Expect = 7.8, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 86 PDAGTVATVGCCERGNEGEARAVFTTRHQELGQSVKRIKGVDNKDNLQLGAQKQVWQSGE 145
P+ G++ T+G + NEG + FT + G+ L +G ++ +W +
Sbjct: 56 PNDGSLYTLG--SKNNEGLTKLPFTIPELVQASPCRSSDGI-----LYMGKKQDIWYVID 108
Query: 146 VYTLEQFESKSKAFARSL 163
+ T E+ ++ S AFA SL
Sbjct: 109 LLTGEKQQTLSSAFADSL 126
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 563-
595) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 1494 EGCGKRFSSHKYAIIHQRVHDDERP 1518
E CGKRF+ + HQRVH E+P
Sbjct: 16 EECGKRFTQNSQLHSHQRVHTGEKP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,938,439
Number of Sequences: 62578
Number of extensions: 1969669
Number of successful extensions: 4871
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 4603
Number of HSP's gapped (non-prelim): 196
length of query: 1581
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1469
effective length of database: 7,964,601
effective search space: 11699998869
effective search space used: 11699998869
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 58 (26.9 bits)