Query 000392
Match_columns 1581
No_of_seqs 600 out of 2407
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:58:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0958 DNA damage-responsive 100.0 2.4E-63 5.2E-68 593.2 16.2 295 14-463 8-307 (690)
2 KOG1246 DNA-binding protein ju 100.0 2E-49 4.3E-54 510.9 22.5 380 20-487 89-487 (904)
3 PF02373 JmjC: JmjC domain, hy 100.0 6.5E-30 1.4E-34 251.6 10.3 114 329-448 1-114 (114)
4 KOG2462 C2H2-type Zn-finger pr 99.8 8.7E-20 1.9E-24 203.0 6.8 119 1448-1572 141-265 (279)
5 KOG2462 C2H2-type Zn-finger pr 99.8 6.1E-19 1.3E-23 196.3 6.5 110 1463-1580 128-245 (279)
6 smart00545 JmjN Small domain f 99.6 7.6E-16 1.6E-20 129.2 4.5 41 20-60 1-41 (42)
7 PF02375 JmjN: jmjN domain; I 99.5 1.8E-14 3.9E-19 115.8 3.3 34 22-55 1-34 (34)
8 KOG1074 Transcriptional repres 99.3 9.5E-13 2.1E-17 162.1 2.7 58 1519-1580 880-937 (958)
9 KOG3623 Homeobox transcription 99.2 2.2E-12 4.7E-17 156.3 0.9 77 1491-1571 895-971 (1007)
10 KOG3623 Homeobox transcription 99.2 3.3E-12 7.2E-17 154.8 1.7 101 1466-1572 211-331 (1007)
11 KOG3576 Ovo and related transc 99.2 5.5E-12 1.2E-16 135.3 3.1 109 1463-1577 115-239 (267)
12 KOG1074 Transcriptional repres 99.2 3.4E-12 7.3E-17 157.4 -0.3 79 1493-1575 608-693 (958)
13 smart00558 JmjC A domain famil 99.2 1.5E-11 3.2E-16 109.2 3.8 56 301-359 2-57 (57)
14 KOG3576 Ovo and related transc 99.1 1.4E-11 3E-16 132.3 0.5 83 1490-1576 117-199 (267)
15 KOG3608 Zn finger proteins [Ge 99.1 4.1E-11 9E-16 136.7 1.5 149 1421-1574 185-345 (467)
16 KOG3608 Zn finger proteins [Ge 99.0 1.1E-10 2.4E-15 133.3 4.1 152 1418-1576 210-378 (467)
17 KOG1246 DNA-binding protein ju 98.5 3.6E-08 7.7E-13 129.8 3.6 177 298-485 603-788 (904)
18 PHA00733 hypothetical protein 98.5 1.6E-07 3.5E-12 97.1 5.3 64 1506-1576 62-125 (128)
19 PLN03086 PRLI-interacting fact 98.4 6.2E-07 1.3E-11 111.3 8.6 107 1458-1575 446-565 (567)
20 PLN03086 PRLI-interacting fact 98.2 1.4E-06 2.9E-11 108.3 6.9 98 1466-1578 434-541 (567)
21 PHA02768 hypothetical protein; 97.9 6.9E-06 1.5E-10 73.4 2.4 42 1519-1566 6-47 (55)
22 PHA02768 hypothetical protein; 97.9 6.1E-06 1.3E-10 73.7 2.0 43 1491-1537 6-48 (55)
23 KOG3993 Transcription factor ( 97.7 7E-06 1.5E-10 96.9 0.3 122 1450-1577 280-485 (500)
24 PF13465 zf-H2C2_2: Zinc-finge 97.6 3.2E-05 6.9E-10 59.2 1.9 26 1535-1562 1-26 (26)
25 KOG3993 Transcription factor ( 97.3 6.1E-05 1.3E-09 89.3 0.2 111 1463-1578 265-384 (500)
26 PHA00733 hypothetical protein 97.3 0.0004 8.8E-09 72.3 5.9 77 1462-1544 37-123 (128)
27 PF13465 zf-H2C2_2: Zinc-finge 97.0 0.0003 6.5E-09 53.9 1.7 26 1505-1532 1-26 (26)
28 KOG2131 Uncharacterized conser 96.7 0.0037 8E-08 73.8 7.8 105 329-452 201-305 (427)
29 PHA00732 hypothetical protein 96.6 0.0017 3.8E-08 62.5 3.4 46 1491-1544 2-48 (79)
30 PHA00616 hypothetical protein 96.5 0.0012 2.5E-08 57.0 1.6 34 1518-1553 1-34 (44)
31 PHA00616 hypothetical protein 96.5 0.0012 2.6E-08 56.9 1.5 31 1491-1521 2-32 (44)
32 PHA00732 hypothetical protein 96.3 0.0035 7.6E-08 60.4 3.5 46 1518-1573 1-47 (79)
33 PF13621 Cupin_8: Cupin-like d 96.3 0.009 2E-07 66.6 7.3 113 326-451 131-248 (251)
34 COG5189 SFP1 Putative transcri 96.0 0.0019 4.2E-08 74.6 0.5 28 1462-1489 346-373 (423)
35 COG5189 SFP1 Putative transcri 96.0 0.0025 5.5E-08 73.7 1.0 64 1494-1571 355-419 (423)
36 PF12756 zf-C2H2_2: C2H2 type 95.8 0.0066 1.4E-07 58.5 3.0 77 1492-1577 1-77 (100)
37 PF05605 zf-Di19: Drought indu 95.4 0.023 4.9E-07 50.8 4.6 51 1518-1575 2-54 (54)
38 PF00096 zf-C2H2: Zinc finger, 95.0 0.013 2.9E-07 43.0 1.7 23 1549-1573 1-23 (23)
39 PF13894 zf-C2H2_4: C2H2-type 94.4 0.028 6E-07 40.8 2.2 24 1549-1574 1-24 (24)
40 PF13912 zf-C2H2_6: C2H2-type 93.8 0.029 6.4E-07 42.8 1.3 26 1548-1575 1-26 (27)
41 KOG2130 Phosphatidylserine-spe 93.3 0.036 7.8E-07 64.7 1.5 122 328-455 181-303 (407)
42 PF00096 zf-C2H2: Zinc finger, 92.8 0.06 1.3E-06 39.5 1.5 23 1519-1543 1-23 (23)
43 PF05605 zf-Di19: Drought indu 92.6 0.17 3.8E-06 45.2 4.4 49 1491-1544 3-53 (54)
44 PF13894 zf-C2H2_4: C2H2-type 91.2 0.12 2.5E-06 37.6 1.4 18 1525-1542 5-22 (24)
45 PF04704 Zfx_Zfy_act: Zfx / Zf 90.4 0.3 6.5E-06 57.4 4.5 89 1221-1326 146-237 (330)
46 KOG1356 Putative transcription 90.3 0.19 4E-06 65.3 3.0 102 360-461 740-845 (889)
47 smart00355 ZnF_C2H2 zinc finge 89.0 0.35 7.7E-06 35.2 2.5 24 1549-1574 1-24 (26)
48 PF12756 zf-C2H2_2: C2H2 type 89.0 0.27 5.8E-06 47.4 2.4 72 1467-1543 1-73 (100)
49 PRK04860 hypothetical protein; 88.4 0.23 5E-06 54.0 1.6 40 1517-1564 118-157 (160)
50 PF13912 zf-C2H2_6: C2H2-type 87.9 0.31 6.7E-06 37.2 1.6 25 1518-1544 1-25 (27)
51 COG5048 FOG: Zn-finger [Genera 87.6 0.22 4.7E-06 58.8 0.9 70 1491-1560 290-363 (467)
52 PF08007 Cupin_4: Cupin superf 86.7 2.9 6.3E-05 50.1 9.6 106 325-458 113-219 (319)
53 COG5048 FOG: Zn-finger [Genera 84.9 0.46 1E-05 56.0 1.8 125 1451-1575 303-443 (467)
54 PF09237 GAGA: GAGA factor; I 84.4 0.89 1.9E-05 40.9 2.8 31 1545-1577 21-51 (54)
55 PF09237 GAGA: GAGA factor; I 83.5 0.82 1.8E-05 41.1 2.2 40 1507-1548 12-52 (54)
56 smart00355 ZnF_C2H2 zinc finge 83.0 1.1 2.3E-05 32.7 2.4 20 1524-1543 4-23 (26)
57 PRK04860 hypothetical protein; 79.4 1.1 2.3E-05 49.1 1.9 40 1489-1534 118-157 (160)
58 PF13909 zf-H2C2_5: C2H2-type 76.6 1.5 3.3E-05 32.7 1.5 24 1549-1575 1-24 (24)
59 KOG2231 Predicted E3 ubiquitin 76.6 3.2 6.9E-05 54.0 5.2 21 1493-1513 185-205 (669)
60 PF12874 zf-met: Zinc-finger o 72.8 1.9 4.1E-05 32.3 1.1 23 1549-1573 1-23 (25)
61 KOG4173 Alpha-SNAP protein [In 71.2 1.1 2.3E-05 50.2 -0.7 81 1464-1544 78-171 (253)
62 KOG1146 Homeobox protein [Gene 67.6 1.6 3.6E-05 59.4 -0.2 27 1545-1573 515-541 (1406)
63 PF12171 zf-C2H2_jaz: Zinc-fin 65.1 3.6 7.7E-05 31.8 1.3 20 1492-1511 3-22 (27)
64 PF12874 zf-met: Zinc-finger o 64.1 4 8.7E-05 30.6 1.3 23 1519-1543 1-23 (25)
65 KOG4377 Zn-finger protein [Gen 61.4 4.4 9.5E-05 49.6 1.7 109 1463-1576 269-429 (480)
66 smart00451 ZnF_U1 U1-like zinc 59.9 2.5 5.3E-05 34.0 -0.5 26 1548-1575 3-28 (35)
67 PF12171 zf-C2H2_jaz: Zinc-fin 59.3 3.2 6.9E-05 32.1 0.1 22 1549-1572 2-23 (27)
68 KOG2893 Zn finger protein [Gen 57.8 4 8.7E-05 46.6 0.6 49 1463-1514 9-59 (341)
69 COG5236 Uncharacterized conser 53.8 8.8 0.00019 46.1 2.4 73 1492-1574 222-305 (493)
70 PF13913 zf-C2HC_2: zinc-finge 48.7 13 0.00028 28.8 1.9 17 1493-1510 5-21 (25)
71 KOG2231 Predicted E3 ubiquitin 48.2 27 0.00059 45.9 5.8 81 1466-1552 183-275 (669)
72 KOG1146 Homeobox protein [Gene 46.3 3.9 8.4E-05 56.1 -2.1 33 1542-1577 1323-1355(1406)
73 COG5236 Uncharacterized conser 45.8 20 0.00044 43.2 3.7 86 1451-1542 202-303 (493)
74 KOG4173 Alpha-SNAP protein [In 43.0 8.7 0.00019 43.4 0.3 79 1491-1574 82-170 (253)
75 PF13909 zf-H2C2_5: C2H2-type 40.8 18 0.00038 27.1 1.5 22 1519-1543 1-22 (24)
76 PF13913 zf-C2HC_2: zinc-finge 38.7 25 0.00054 27.3 2.0 19 1550-1571 4-22 (25)
77 KOG2893 Zn finger protein [Gen 36.4 11 0.00024 43.2 -0.1 45 1493-1543 13-58 (341)
78 KOG4124 Putative transcription 30.3 9.3 0.0002 46.0 -2.1 71 1463-1539 347-417 (442)
79 PF05443 ROS_MUCR: ROS/MUCR tr 25.4 40 0.00087 36.2 1.7 23 1549-1576 73-95 (132)
80 COG4049 Uncharacterized protei 24.6 33 0.00072 31.7 0.8 30 1544-1575 13-42 (65)
81 COG1791 Uncharacterized conser 24.3 58 0.0013 36.4 2.7 40 412-456 115-161 (181)
82 smart00451 ZnF_U1 U1-like zinc 24.0 54 0.0012 26.3 1.8 23 1518-1542 3-25 (35)
83 KOG2482 Predicted C2H2-type Zn 20.6 73 0.0016 38.8 2.7 103 1465-1573 195-357 (423)
No 1
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-63 Score=593.18 Aligned_cols=295 Identities=35% Similarity=0.610 Sum_probs=247.2
Q ss_pred cccCCCCCccccCChhhhcCHHHHHHHHHHhhhh-cceEEEcCCCCCCCccccccccccccccccccCCCCCCCCCCccc
Q 000392 14 WLQGLPLAPVFYPTDTEFADPIAYISRIEKEASA-FGICKIVPPLPKPSKKYVFGNLNKSLSKCSELGSDVNLPDAGTVA 92 (1581)
Q Consensus 14 w~~~~~~~p~~~Pt~~ef~d~~~yi~~i~~~~~~-~Gi~kivpP~~~Ps~k~~~~nl~ksl~~~~~~~~~~~~~~~~~~~ 92 (1581)
-|......||||||++||+||.+||++|+++|.+ +||+|||||++|.++.. ++
T Consensus 8 ~i~ps~~I~tF~PtmeEF~dF~~yi~~IEs~G~h~aGlaKVipPkeWk~r~~------------------~~-------- 61 (690)
T KOG0958|consen 8 EINPSDGIPTFYPTMEEFADFSAYIAYIESQGAHRAGLAKVIPPKEWKPRLM------------------YD-------- 61 (690)
T ss_pred ccCCCCCcceeCcCHHHHHhHHHHHHHHHhccchhcCeeeeeCCccCCcccc------------------cC--------
Confidence 4556889999999999999999999999999755 99999999998776531 00
Q ss_pred cccccCCCCCCcccceeeccccccccccccccccCCccccccccccccccCCCccCHHhHHHHHHHHHHhhcCCCC-CCC
Q 000392 93 TVGCCERGNEGEARAVFTTRHQELGQSVKRIKGVDNKDNLQLGAQKQVWQSGEVYTLEQFESKSKAFARSLLSVIK-EVS 171 (1581)
Q Consensus 93 ~~~~~~~~~~~~~~~~F~TR~Q~l~~~~kk~kg~~~~~~~~~~~~~~~~qsG~~YTL~~F~~~A~~F~~~~f~~~~-~~s 171 (1581)
...+.+.++.+||+-. +..|....+|. |.-..||+.||+.+|+. .-|.... ...
T Consensus 62 ----------di~di~I~~PiqQ~v~---g~~G~F~~~Ni---------~~~kam~v~q~r~lAns---~~y~tpr~~~d 116 (690)
T KOG0958|consen 62 ----------DIDDIKIPAPIQQVVT---GQGGLFTQYNI---------QDKKAMTVRQFRDLANS---DKYCTPRGSQD 116 (690)
T ss_pred ----------chhheecChhHHHHhh---ccCceEEEeeh---------hhccccChhhhhhhhhh---cccCCCccccc
Confidence 1123446677775543 34454332332 45778999999999984 3333333 666
Q ss_pred hHHHHHHhhhhccc-CceEEeeCCCCCCCCCCCCCcchhhhhhccccccccccccccCCccchhhhhhhhcccCCccccc
Q 000392 172 PLVIEALFWKAASE-KPVYVEYANDVPGSGFGEPEGQFRYFHRRRRKVTSWKSYRNRGKADEKNIELESARNCHNDQITH 250 (1581)
Q Consensus 172 ~~~iE~efWr~v~~-~~v~VeYGaDi~GSgF~~~~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1581)
.+++|+.|||.+.. .|| ||+|+.||-|+..-
T Consensus 117 ~~dle~kYWKnltf~~Pi---YGaD~~gSi~~~~~--------------------------------------------- 148 (690)
T KOG0958|consen 117 FEDLEQKYWKNLTFDSPI---YGADINGSIYDEDL--------------------------------------------- 148 (690)
T ss_pred HHHHHHHHHhcccCCCCc---ccccCCCccCcccc---------------------------------------------
Confidence 78999999999997 899 99999999998721
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccCcccccccCCCCCccccCCCCCCcc--cCCCCCCCCcccc
Q 000392 251 SCDKNDLETPTSSTPSSTLPFDENSRSSRRKSVTGSNDVEGTAGWKLSNSPWNLQVISRSPGSLT--RFMPDDIPGVTSP 328 (1581)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~pWNL~nLp~~~gSLL--~~l~~dI~GVntP 328 (1581)
.-||+++|+. +| ...+..|.|||+|
T Consensus 149 -------------------------------------------------~~WNi~~L~t----ild~~~~~~~i~gvNt~ 175 (690)
T KOG0958|consen 149 -------------------------------------------------DEWNIARLDT----ILDLEECGIIIEGVNTP 175 (690)
T ss_pred -------------------------------------------------cccccccccc----hhchhhcceeecccCcc
Confidence 0199998874 44 3667789999999
Q ss_pred eeeeccccccccceecCCCceeeEEeeeCCCeEEEEecCccHHHHHHHHHhhhcCCChhHHHHHhhhcCcccccChhHHH
Q 000392 329 MVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEAYGGDIDRLAALSLLGEKTTLISPEVIA 408 (1581)
Q Consensus 329 ~LYiGm~fStf~WH~ED~~L~SINY~H~GapK~WY~VP~~~a~kFE~lmr~~~~~~~~d~~~~~~~L~h~~tlisPe~L~ 408 (1581)
|||.|||.++|+||+||.+||||||+|||+||+||+||++|.++||+|+.+. |+.. ...|.+||+|++++++|.+|+
T Consensus 176 yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~~-fp~~--~~~C~aFLRHK~~LiSP~~Lk 252 (690)
T KOG0958|consen 176 YLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASEL-FPDS--SQGCPAFLRHKMTLISPSVLK 252 (690)
T ss_pred ceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHhh-CCcc--ccCCHHHHhhcccccCHHHHH
Confidence 9999999999999999999999999999999999999999999999999987 4333 236899999999999999999
Q ss_pred hCCCceEeeeccCCcEEEEcCCceeeeeccccceeeeeccCChhHHHHHHHHHHH
Q 000392 409 ASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANFGTPQWLMVAKEAAVR 463 (1581)
Q Consensus 409 ~~GIpv~r~vQ~PGEfVVTfPgAYHsgfn~GfN~aEAVNFA~~~WL~~g~ea~e~ 463 (1581)
++|||+++++|++|||+||||++||+|||+||||+|++|||++.|+.||+.|..+
T Consensus 253 qnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~YgK~a~~C 307 (690)
T KOG0958|consen 253 QNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWIDYGKQALLC 307 (690)
T ss_pred HcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhhhccccccc
Confidence 9999999999999999999999999999999999999999999999999999543
No 2
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=100.00 E-value=2e-49 Score=510.90 Aligned_cols=380 Identities=35% Similarity=0.570 Sum_probs=280.4
Q ss_pred CCccccCChhhhcCHHHHHHHHHHhhhhcceEEEcCCCCCCCccccccccccccccccccCCC----CCCCCCCcccccc
Q 000392 20 LAPVFYPTDTEFADPIAYISRIEKEASAFGICKIVPPLPKPSKKYVFGNLNKSLSKCSELGSD----VNLPDAGTVATVG 95 (1581)
Q Consensus 20 ~~p~~~Pt~~ef~d~~~yi~~i~~~~~~~Gi~kivpP~~~Ps~k~~~~nl~ksl~~~~~~~~~----~~~~~~~~~~~~~ 95 (1581)
..+.+.+....|.|...|+.+++..++.+|+|.++||..+-+.. ...++..+.-...... .+.+......+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 165 (904)
T KOG1246|consen 89 LKPLLLSIPKNFKDKLLYISKLKLRAEFYGICEKLPPPTSKPKE---PLKGKQNWFSSGFDQREVEFIDYPQCNTCSKGK 165 (904)
T ss_pred ccccccccCccccchhhccccccccccccccccccCCcccCCCC---cCCcccccccCCCCCcccccccchhhhccccCC
Confidence 45678888899999999999999999999999999986432211 1111111111000000 0011111111100
Q ss_pred c-----cCCCCCCcccceeeccccccccccccccccCCcc-ccccccccccccCCC-ccCHHhHHHHHHHHHHhhcCCCC
Q 000392 96 C-----CERGNEGEARAVFTTRHQELGQSVKRIKGVDNKD-NLQLGAQKQVWQSGE-VYTLEQFESKSKAFARSLLSVIK 168 (1581)
Q Consensus 96 ~-----~~~~~~~~~~~~F~TR~Q~l~~~~kk~kg~~~~~-~~~~~~~~~~~qsG~-~YTL~~F~~~A~~F~~~~f~~~~ 168 (1581)
. .+.-.+.....-..+...++....++ ...... .......+++|..|. .|||..|+++|+.|+..||....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~~~~~~~~~~~~ 243 (904)
T KOG1246|consen 166 EEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWR--CPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYADNFKKDYFPKSK 243 (904)
T ss_pred CccceecccccCcccccccCCCCCcCCcCccc--CCcccccccCCcccccCcCCCCCccccchhhhHhhhhhcccccccc
Confidence 0 00000000000001111111100000 000000 011223567777777 89999999999999999998754
Q ss_pred CCC--hHHHHHHhhhhccc--CceEEeeCCCCC----CCCCCCCCcchhhhhhccccccccccccccCCccchhhhhhhh
Q 000392 169 EVS--PLVIEALFWKAASE--KPVYVEYANDVP----GSGFGEPEGQFRYFHRRRRKVTSWKSYRNRGKADEKNIELESA 240 (1581)
Q Consensus 169 ~~s--~~~iE~efWr~v~~--~~v~VeYGaDi~----GSgF~~~~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 240 (1581)
... .+.+|++||++|.. ..++|+||+|+. ||||+..... .
T Consensus 244 ~~~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~------------------~-------------- 291 (904)
T KOG1246|consen 244 NSPDSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASG------------------P-------------- 291 (904)
T ss_pred CCCCchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCC------------------C--------------
Confidence 433 46999999999985 789999999994 7888773220 0
Q ss_pred cccCCccccccCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCccCcccccccCCCCCccccCCCCCCcccCCCC
Q 000392 241 RNCHNDQITHSCDKNDLETPTSSTPSSTLPFDENSRSSRRKSVTGSNDVEGTAGWKLSNSPWNLQVISRSPGSLTRFMPD 320 (1581)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~pWNL~nLp~~~gSLL~~l~~ 320 (1581)
. .. ..-++|++++|||+|||++++|+|+|.+.
T Consensus 292 -------------------~----~~-------------------------~~~~~y~~s~wnL~~i~~~~~svl~~~~~ 323 (904)
T KOG1246|consen 292 -------------------L----LG-------------------------SEAEKYSNSGWNLNNIPRLEGSVLSHIDT 323 (904)
T ss_pred -------------------C----CC-------------------------cchhhhccCcccccccccCCccccccccC
Confidence 0 00 00247999999999999999999999999
Q ss_pred CCCCcccceeeeccccccccceecCCCceeeEEeeeCCCeEEEEecCccHHHHHHHHHhhhcCCChhHHHHHhhhcCccc
Q 000392 321 DIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEAYGGDIDRLAALSLLGEKTT 400 (1581)
Q Consensus 321 dI~GVntP~LYiGm~fStf~WH~ED~~L~SINY~H~GapK~WY~VP~~~a~kFE~lmr~~~~~~~~d~~~~~~~L~h~~t 400 (1581)
+|+|+++||+|+||+||+||||+|||++||+||+|+|.||+||+||++++++||++|++...+... .++++++...+
T Consensus 324 di~g~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~~e~~~~~~~p~~~~---~~pd~~~~~~~ 400 (904)
T KOG1246|consen 324 DISGVTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEKFEKAMNKLSPGLFI---EQPDLLHALVT 400 (904)
T ss_pred CcCccccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHHHHHHHHhhCCcccc---cCccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999987422111 23467788899
Q ss_pred ccChhHHHhCCCceEeeeccCCcEEEEcCCceeeeeccccceeeeeccCChhHHHHHHHHHHHHHHcCCCCCccHHHHHH
Q 000392 401 LISPEVIAASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANFGTPQWLMVAKEAAVRRAAMNYLPMLSHQQLLY 480 (1581)
Q Consensus 401 lisPe~L~~~GIpv~r~vQ~PGEfVVTfPgAYHsgfn~GfN~aEAVNFA~~~WL~~g~ea~e~~~~~~~~p~~sh~~LL~ 480 (1581)
+++|..|..+|||+++++|+||+||||||++||+||++|||++|+|||||.+||++|+.++++|+.+.+.++|||+.|+.
T Consensus 401 ~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~~gr~~~~~~~~~~~~~lfs~~~l~~ 480 (904)
T KOG1246|consen 401 LMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLPVGRGAAEAYSLLLRLSLFSHDELAL 480 (904)
T ss_pred ccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhHHHHHHHHHHHhhccCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc
Q 000392 481 LLTMSFI 487 (1581)
Q Consensus 481 ~~A~~~~ 487 (1581)
.+|....
T Consensus 481 ~~~~~~~ 487 (904)
T KOG1246|consen 481 LNAENPV 487 (904)
T ss_pred hccccch
Confidence 9997643
No 3
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.96 E-value=6.5e-30 Score=251.59 Aligned_cols=114 Identities=43% Similarity=0.768 Sum_probs=98.4
Q ss_pred eeeeccccccccceecCCCceeeEEeeeCCCeEEEEecCccHHHHHHHHHhhhcCCChhHHHHHhhhcCcccccChhHHH
Q 000392 329 MVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEAYGGDIDRLAALSLLGEKTTLISPEVIA 408 (1581)
Q Consensus 329 ~LYiGm~fStf~WH~ED~~L~SINY~H~GapK~WY~VP~~~a~kFE~lmr~~~~~~~~d~~~~~~~L~h~~tlisPe~L~ 408 (1581)
|||+||.||+|+||+||+.++||||+|+|++|+||.||++++++|+++++.. ....+++++.+...++.|+.|.
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~~l~ 74 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSK------ESQNCPQFLDHKNIFVSPEQLK 74 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHH------HHHHSTTGGCTGGEEEGHHHHH
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhc------ccccccccccccccccceeeee
Confidence 8999999999999999999999999999999999999999999999999875 1124456688999999999999
Q ss_pred hCCCceEeeeccCCcEEEEcCCceeeeeccccceeeeecc
Q 000392 409 ASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANF 448 (1581)
Q Consensus 409 ~~GIpv~r~vQ~PGEfVVTfPgAYHsgfn~GfN~aEAVNF 448 (1581)
++|||+++++|+|||||||+||+||+++|.|+|++|||||
T Consensus 75 ~~gi~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 75 KAGIPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp HTTS--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred ccCcccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 9999999999999999999999999999999999999998
No 4
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.79 E-value=8.7e-20 Score=202.98 Aligned_cols=119 Identities=25% Similarity=0.469 Sum_probs=108.4
Q ss_pred CCCCCcccccccccC---CCcccccCCCCCCcccChHHHHhhhhcc---ccCCCCCCccCChhHHHHHhhhcCCCCcccC
Q 000392 1448 RESVPAPCQDKKKIL---KGHHRCDLDGCRMSFETKRELSLHKRNR---CPHEGCGKRFSSHKYAIIHQRVHDDERPLKC 1521 (1581)
Q Consensus 1448 ~~ss~L~~H~k~h~~---~kpfkCe~e~CGKsF~sks~L~~H~r~h---c~Ce~CGKsFsskssL~~HmrvHtgEKpfkC 1521 (1581)
.....|.+|++.|.. .+-+.|.. |||.|.+-..|+.|++.| |.|.+|||.|.+...|+-|+|+|+|||||.|
T Consensus 141 sT~snLsrHkQ~H~~~~s~ka~~C~~--C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C 218 (279)
T KOG2462|consen 141 STSSNLSRHKQTHRSLDSKKAFSCKY--CGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSC 218 (279)
T ss_pred ccccccchhhcccccccccccccCCC--CCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccC
Confidence 344457778888853 56688985 999999999999999976 9999999999999999999999999999999
Q ss_pred CCCCccccccChHHHHHHHhhcCCCCcccCCCCCCCCcccChhhHHHHHHH
Q 000392 1522 PWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRK 1572 (1581)
Q Consensus 1522 ~~~iCGKsFs~kssL~~H~RiHTGEKPfkC~v~gCGKsF~~kSsLkrH~Rk 1572 (1581)
..|+|.|..+++|+.||++|++.|+|+|.. |+|.|..++.|.+|...
T Consensus 219 --~hC~kAFADRSNLRAHmQTHS~~K~~qC~~--C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 219 --PHCGKAFADRSNLRAHMQTHSDVKKHQCPR--CGKSFALKSYLNKHSES 265 (279)
T ss_pred --CcccchhcchHHHHHHHHhhcCCccccCcc--hhhHHHHHHHHHHhhhh
Confidence 569999999999999999999999999998 99999999999999764
No 5
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.75 E-value=6.1e-19 Score=196.29 Aligned_cols=110 Identities=31% Similarity=0.618 Sum_probs=103.2
Q ss_pred CCcccccCCCCCCcccChHHHHhhhhcc--------ccCCCCCCccCChhHHHHHhhhcCCCCcccCCCCCccccccChH
Q 000392 1463 KGHHRCDLDGCRMSFETKRELSLHKRNR--------CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAW 1534 (1581)
Q Consensus 1463 ~kpfkCe~e~CGKsF~sks~L~~H~r~h--------c~Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs~ks 1534 (1581)
...|+|. .|||.|.+.++|.+|+..| +.|..|||.|.+...|+.|+++|+ -+++| .+|||.|.+.|
T Consensus 128 ~~r~~c~--eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C--~iCGKaFSRPW 201 (279)
T KOG2462|consen 128 HPRYKCP--ECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCEC--GICGKAFSRPW 201 (279)
T ss_pred CCceecc--ccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCccc--ccccccccchH
Confidence 3457787 6999999999999999987 679999999999999999999998 67999 78999999999
Q ss_pred HHHHHHhhcCCCCcccCCCCCCCCcccChhhHHHHHHHhCCCCCCC
Q 000392 1535 ARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHYENLS 1580 (1581)
Q Consensus 1535 sL~~H~RiHTGEKPfkC~v~gCGKsF~~kSsLkrH~RkHhg~enle 1580 (1581)
.|+.|+|+|||||||.|.. |+|.|..+++|+.|+++|.+.++|+
T Consensus 202 LLQGHiRTHTGEKPF~C~h--C~kAFADRSNLRAHmQTHS~~K~~q 245 (279)
T KOG2462|consen 202 LLQGHIRTHTGEKPFSCPH--CGKAFADRSNLRAHMQTHSDVKKHQ 245 (279)
T ss_pred HhhcccccccCCCCccCCc--ccchhcchHHHHHHHHhhcCCcccc
Confidence 9999999999999999999 9999999999999999999999875
No 6
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=99.59 E-value=7.6e-16 Score=129.17 Aligned_cols=41 Identities=56% Similarity=1.036 Sum_probs=39.2
Q ss_pred CCccccCChhhhcCHHHHHHHHHHhhhhcceEEEcCCCCCC
Q 000392 20 LAPVFYPTDTEFADPIAYISRIEKEASAFGICKIVPPLPKP 60 (1581)
Q Consensus 20 ~~p~~~Pt~~ef~d~~~yi~~i~~~~~~~Gi~kivpP~~~P 60 (1581)
++|||+||++||+||++||++|+++|++|||||||||.+|.
T Consensus 1 eiPvf~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP~~w~ 41 (42)
T smart00545 1 EIPVFYPTMEEFKDPLAYISKIRPQAEKYGICKVVPPKSWK 41 (42)
T ss_pred CCCeEcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECCCCCC
Confidence 68999999999999999999999999999999999999764
No 7
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.48 E-value=1.8e-14 Score=115.77 Aligned_cols=34 Identities=71% Similarity=1.263 Sum_probs=27.8
Q ss_pred ccccCChhhhcCHHHHHHHHHHhhhhcceEEEcC
Q 000392 22 PVFYPTDTEFADPIAYISRIEKEASAFGICKIVP 55 (1581)
Q Consensus 22 p~~~Pt~~ef~d~~~yi~~i~~~~~~~Gi~kivp 55 (1581)
||||||+|||+||++||++|+++|++||||||||
T Consensus 1 Pvf~Pt~eEF~dp~~yi~~i~~~g~~~Gi~KIvP 34 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIKYISSIEPEGEKYGICKIVP 34 (34)
T ss_dssp EEE---HHHHS-HHHHHHHHHHTTGGGSEEEE--
T ss_pred CcccCCHHHHhCHHHHHHHHHHHHHHCCEEEecC
Confidence 8999999999999999999999999999999998
No 8
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.28 E-value=9.5e-13 Score=162.14 Aligned_cols=58 Identities=28% Similarity=0.502 Sum_probs=53.5
Q ss_pred ccCCCCCccccccChHHHHHHHhhcCCCCcccCCCCCCCCcccChhhHHHHHHHhCCCCCCC
Q 000392 1519 LKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHYENLS 1580 (1581)
Q Consensus 1519 fkC~~~iCGKsFs~kssL~~H~RiHTGEKPfkC~v~gCGKsF~~kSsLkrH~RkHhg~enle 1580 (1581)
+.| ..||+.|...+.|..|+|+|+|+|||.|.+ |++.|..+.+|+.||.+|+...+.+
T Consensus 880 h~C--~vCgk~FsSSsALqiH~rTHtg~KPF~C~f--C~~aFttrgnLKvHMgtH~w~q~~s 937 (958)
T KOG1074|consen 880 HVC--NVCGKQFSSSAALEIHMRTHTGPKPFFCHF--CEEAFTTRGNLKVHMGTHMWVQPPS 937 (958)
T ss_pred hhh--ccchhcccchHHHHHhhhcCCCCCCccchh--hhhhhhhhhhhhhhhccccccCCCc
Confidence 447 789999999999999999999999999999 9999999999999999999776653
No 9
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.22 E-value=2.2e-12 Score=156.30 Aligned_cols=77 Identities=31% Similarity=0.619 Sum_probs=71.9
Q ss_pred ccCCCCCCccCChhHHHHHhhhcCCCCcccCCCCCccccccChHHHHHHHhhcCCCCcccCCCCCCCCcccChhhHHHHH
Q 000392 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHR 1570 (1581)
Q Consensus 1491 c~Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs~kssL~~H~RiHTGEKPfkC~v~gCGKsF~~kSsLkrH~ 1570 (1581)
|.|+.|+|.|...++|.+|.--|+|.|||+| .+|.|.|+++-+|..|+|.|+|||||+|+. |+|+|....++.+||
T Consensus 895 yaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC--~iCkKAFKHKHHLtEHkRLHSGEKPfQCdK--ClKRFSHSGSYSQHM 970 (1007)
T KOG3623|consen 895 YACDQCDKAFQKQSSLARHKYEHSGQRPYQC--IICKKAFKHKHHLTEHKRLHSGEKPFQCDK--CLKRFSHSGSYSQHM 970 (1007)
T ss_pred chHHHHHHHHHhhHHHHHhhhhhcCCCCccc--chhhHhhhhhhhhhhhhhhccCCCcchhhh--hhhhcccccchHhhh
Confidence 5556788888889999999999999999999 889999999999999999999999999998 999999999999998
Q ss_pred H
Q 000392 1571 R 1571 (1581)
Q Consensus 1571 R 1571 (1581)
.
T Consensus 971 N 971 (1007)
T KOG3623|consen 971 N 971 (1007)
T ss_pred c
Confidence 4
No 10
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.21 E-value=3.3e-12 Score=154.79 Aligned_cols=101 Identities=26% Similarity=0.534 Sum_probs=92.2
Q ss_pred ccccCCCCCCcccChHHHHhhhhc-------cccCCCCCCccCChhHHHHHhhhcC-------------CCCcccCCCCC
Q 000392 1466 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHD-------------DERPLKCPWKG 1525 (1581)
Q Consensus 1466 fkCe~e~CGKsF~sks~L~~H~r~-------hc~Ce~CGKsFsskssL~~HmrvHt-------------gEKpfkC~~~i 1525 (1581)
..|++ |.+.+.....|+.|++. .|.|..|..+|..+..|.+||..|. ..|.|+| .+
T Consensus 211 ltcpy--cdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKC--tE 286 (1007)
T KOG3623|consen 211 LTCPY--CDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKC--TE 286 (1007)
T ss_pred hcchh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccc--cc
Confidence 45885 99999999999999885 2899999999999999999999885 2477999 89
Q ss_pred ccccccChHHHHHHHhhcCCCCcccCCCCCCCCcccChhhHHHHHHH
Q 000392 1526 CSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRK 1572 (1581)
Q Consensus 1526 CGKsFs~kssL~~H~RiHTGEKPfkC~v~gCGKsF~~kSsLkrH~Rk 1572 (1581)
|||.|+++-+|+.|+|+|+|||||.|+. |+|+|....++..||..
T Consensus 287 CgKAFKfKHHLKEHlRIHSGEKPfeCpn--CkKRFSHSGSySSHmSS 331 (1007)
T KOG3623|consen 287 CGKAFKFKHHLKEHLRIHSGEKPFECPN--CKKRFSHSGSYSSHMSS 331 (1007)
T ss_pred cchhhhhHHHHHhhheeecCCCCcCCcc--cccccccCCcccccccc
Confidence 9999999999999999999999999998 99999999999999854
No 11
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.20 E-value=5.5e-12 Score=135.29 Aligned_cols=109 Identities=25% Similarity=0.438 Sum_probs=97.2
Q ss_pred CCcccccCCCCCCcccChHHHHhhhhcc-----ccCCCCCCccCChhHHHHHhhhcCCCCcccCCCCCccccccChHHHH
Q 000392 1463 KGHHRCDLDGCRMSFETKRELSLHKRNR-----CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWART 1537 (1581)
Q Consensus 1463 ~kpfkCe~e~CGKsF~sks~L~~H~r~h-----c~Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs~kssL~ 1537 (1581)
...|.|.+ |+|.|....-|.+|++.| |-|..|||.|..-..|++|+++|+|.|||+| ..|+|.|.+.-.|.
T Consensus 115 ~d~ftCrv--CgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc--~~c~kaftqrcsle 190 (267)
T KOG3576|consen 115 QDSFTCRV--CGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKC--SLCEKAFTQRCSLE 190 (267)
T ss_pred CCeeeeeh--hhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccch--hhhhHHHHhhccHH
Confidence 34588996 999999999999999965 6788999999999999999999999999999 78999999999999
Q ss_pred HHHh-hcC----------CCCcccCCCCCCCCcccChhhHHHHHHHhCCCC
Q 000392 1538 EHIR-VHT----------GERPYKCKFEGCGLSFRFVSDISRHRRKTGHYE 1577 (1581)
Q Consensus 1538 ~H~R-iHT----------GEKPfkC~v~gCGKsF~~kSsLkrH~RkHhg~e 1577 (1581)
.|.+ +|. .+|-|+|+. ||..-.+...+..|++.||...
T Consensus 191 shl~kvhgv~~~yaykerr~kl~vced--cg~t~~~~e~~~~h~~~~hp~S 239 (267)
T KOG3576|consen 191 SHLKKVHGVQHQYAYKERRAKLYVCED--CGYTSERPEVYYLHLKLHHPFS 239 (267)
T ss_pred HHHHHHcCchHHHHHHHhhhheeeecc--cCCCCCChhHHHHHHHhcCCCC
Confidence 9976 564 457799998 9998888889999999998654
No 12
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.17 E-value=3.4e-12 Score=157.43 Aligned_cols=79 Identities=27% Similarity=0.448 Sum_probs=68.9
Q ss_pred CCCCCCccCChhHHHHHhhhcCCCCcccCCCCCccccccChHHHHHHHhhcCCCC----cccCC---CCCCCCcccChhh
Q 000392 1493 HEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGER----PYKCK---FEGCGLSFRFVSD 1565 (1581)
Q Consensus 1493 Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs~kssL~~H~RiHTGEK----PfkC~---v~gCGKsF~~kSs 1565 (1581)
|-+|.+...-++.|+.|.++|+|||||+| .+||+.|.++.+|+.|+-+|...- +|.|+ + |-+.|...-.
T Consensus 608 CiiC~rVlSC~saLqmHyrtHtGERPFkC--KiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~i--c~~kftn~V~ 683 (958)
T KOG1074|consen 608 CIICLRVLSCPSALQMHYRTHTGERPFKC--KICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFI--CQKKFTNAVT 683 (958)
T ss_pred eeeeeecccchhhhhhhhhcccCcCcccc--ccccchhccccchhhcccccccCccccccccCCchhh--hccccccccc
Confidence 77789999999999999999999999999 889999999999999999886443 47788 8 9999999999
Q ss_pred HHHHHHHhCC
Q 000392 1566 ISRHRRKTGH 1575 (1581)
Q Consensus 1566 LkrH~RkHhg 1575 (1581)
|..|+|.|.+
T Consensus 684 lpQhIriH~~ 693 (958)
T KOG1074|consen 684 LPQHIRIHLG 693 (958)
T ss_pred ccceEEeecC
Confidence 9999998874
No 13
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=99.17 E-value=1.5e-11 Score=109.22 Aligned_cols=56 Identities=38% Similarity=0.608 Sum_probs=53.6
Q ss_pred CCCccccCCCCCCcccCCCCCCCCcccceeeeccccccccceecCCCceeeEEeeeCCC
Q 000392 301 PWNLQVISRSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAP 359 (1581)
Q Consensus 301 pWNL~nLp~~~gSLL~~l~~dI~GVntP~LYiGm~fStf~WH~ED~~L~SINY~H~Gap 359 (1581)
+|||+++|. .++||++++.+++|+++||+|+||++|+|+||+|++.+ +||+|.|+.
T Consensus 2 ~~~l~~lP~-~~~ll~~~~~~~~~~~~~~~~~G~~~s~t~~H~d~~~~--~n~~~~~~~ 57 (57)
T smart00558 2 LNNLAKLPF-KLNLLSDLPEDILGPDVPYLYMGMAGSVTPWHIDDYDL--VNYLHQGAG 57 (57)
T ss_pred cchhhhCCC-cchHHHHCCcccCCCCcceEEEeCCCCccceeEcCCCe--EEEEEecCC
Confidence 599999999 89999999999999999999999999999999999999 999999873
No 14
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.10 E-value=1.4e-11 Score=132.27 Aligned_cols=83 Identities=29% Similarity=0.559 Sum_probs=78.9
Q ss_pred cccCCCCCCccCChhHHHHHhhhcCCCCcccCCCCCccccccChHHHHHHHhhcCCCCcccCCCCCCCCcccChhhHHHH
Q 000392 1490 RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRH 1569 (1581)
Q Consensus 1490 hc~Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs~kssL~~H~RiHTGEKPfkC~v~gCGKsF~~kSsLkrH 1569 (1581)
.|.|..|+|.|.....|.+|++.|...|.|-| .-|||.|.....|++|+|+|||.+||+|.. |+|.|+++.+|..|
T Consensus 117 ~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lc--t~cgkgfndtfdlkrh~rthtgvrpykc~~--c~kaftqrcslesh 192 (267)
T KOG3576|consen 117 SFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLC--TFCGKGFNDTFDLKRHTRTHTGVRPYKCSL--CEKAFTQRCSLESH 192 (267)
T ss_pred eeeeehhhhhhhHHHHHHHHhhhccHHHHHHH--hhccCcccchhhhhhhhccccCccccchhh--hhHHHHhhccHHHH
Confidence 47899999999999999999999999999999 569999999999999999999999999999 99999999999999
Q ss_pred HHHhCCC
Q 000392 1570 RRKTGHY 1576 (1581)
Q Consensus 1570 ~RkHhg~ 1576 (1581)
.++.||.
T Consensus 193 l~kvhgv 199 (267)
T KOG3576|consen 193 LKKVHGV 199 (267)
T ss_pred HHHHcCc
Confidence 9987764
No 15
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.05 E-value=4.1e-11 Score=136.70 Aligned_cols=149 Identities=20% Similarity=0.330 Sum_probs=114.0
Q ss_pred cCCCccCCChhhHHHHHhh----hhccccCC--CCCCCcccccccc--cCCCcccccCCCCCCcccChHHHHhhhhcc--
Q 000392 1421 AGKDAANTSEVDIRKIAEK----RATKTMRN--RESVPAPCQDKKK--ILKGHHRCDLDGCRMSFETKRELSLHKRNR-- 1490 (1581)
Q Consensus 1421 ~gk~~~~~s~~~~~~~~~k----~~~k~~~k--~~ss~L~~H~k~h--~~~kpfkCe~e~CGKsF~sks~L~~H~r~h-- 1490 (1581)
|...+.++..+..|..... -++..|.. +.+..|..|.+.. ....+|.|. +|-|.|.+...|..|+.+|
T Consensus 185 Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~--~C~KrFaTeklL~~Hv~rHvn 262 (467)
T KOG3608|consen 185 CTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCA--QCFKRFATEKLLKSHVVRHVN 262 (467)
T ss_pred hhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHH--HHHHHHhHHHHHHHHHHHhhh
Confidence 4445555666655544432 22233333 4444455555433 356678888 5889999998899888865
Q ss_pred -ccCCCCCCccCChhHHHHHhh-hcCCCCcccCCCCCccccccChHHHHHHHhhcCCCCcccCCCCCCCCcccChhhHHH
Q 000392 1491 -CPHEGCGKRFSSHKYAIIHQR-VHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISR 1568 (1581)
Q Consensus 1491 -c~Ce~CGKsFsskssL~~Hmr-vHtgEKpfkC~~~iCGKsFs~kssL~~H~RiHTGEKPfkC~v~gCGKsF~~kSsLkr 1568 (1581)
|+|+.|+-+....++|..|++ .|...|||+| +.|++.|.+.+.|.+|..+|+ +.-|+|+.+.|...|++...+++
T Consensus 263 ~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKC--d~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~ 339 (467)
T KOG3608|consen 263 CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKC--DECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRR 339 (467)
T ss_pred cccccccccCCCChHHHHHHHHhhhccCCCccc--cchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHH
Confidence 889999999999999999998 5888999999 889999999999999999998 66799998889999999999999
Q ss_pred HHHHhC
Q 000392 1569 HRRKTG 1574 (1581)
Q Consensus 1569 H~RkHh 1574 (1581)
|++.||
T Consensus 340 H~~evh 345 (467)
T KOG3608|consen 340 HFLEVH 345 (467)
T ss_pred HHHHhc
Confidence 998877
No 16
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.04 E-value=1.1e-10 Score=133.30 Aligned_cols=152 Identities=18% Similarity=0.254 Sum_probs=117.4
Q ss_pred ccccCCCccCCChhhHHHHHhh------hhccccCCCC--CCCcccccccccCCCcccccCCCCCCcccChHHHHhhhhc
Q 000392 1418 RSRAGKDAANTSEVDIRKIAEK------RATKTMRNRE--SVPAPCQDKKKILKGHHRCDLDGCRMSFETKRELSLHKRN 1489 (1581)
Q Consensus 1418 rs~~gk~~~~~s~~~~~~~~~k------~~~k~~~k~~--ss~L~~H~k~h~~~kpfkCe~e~CGKsF~sks~L~~H~r~ 1489 (1581)
++.||.-|.+.+.+-.|-.... ..+..|.++. ...|..|+..|. ..|+|++ |+.+....+.|..|++.
T Consensus 210 Cp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv--n~ykCpl--Cdmtc~~~ssL~~H~r~ 285 (467)
T KOG3608|consen 210 CPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV--NCYKCPL--CDMTCSSASSLTTHIRY 285 (467)
T ss_pred cchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh--hcccccc--cccCCCChHHHHHHHHh
Confidence 3457777777776654332211 2333333322 223566777775 4699997 99999999999999994
Q ss_pred ------cccCCCCCCccCChhHHHHHhhhcCCCCcccCCCCCccccccChHHHHHHHhh-cCC--CCcccCCCCCCCCcc
Q 000392 1490 ------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRV-HTG--ERPYKCKFEGCGLSF 1560 (1581)
Q Consensus 1490 ------hc~Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs~kssL~~H~Ri-HTG--EKPfkC~v~gCGKsF 1560 (1581)
+|+|+.|++.|...+.|.+|..+|. +-.|.|.+..|..+|.+...+++|++- |.| +-+|.|-. |++.|
T Consensus 286 rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~--Cdr~f 362 (467)
T KOG3608|consen 286 RHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHC--CDRFF 362 (467)
T ss_pred hhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeec--chhhh
Confidence 4899999999999999999999998 777999666699999999999999985 545 44699999 99999
Q ss_pred cChhhHHHHHHHhCCC
Q 000392 1561 RFVSDISRHRRKTGHY 1576 (1581)
Q Consensus 1561 ~~kSsLkrH~RkHhg~ 1576 (1581)
++..+|..|.++.|+.
T Consensus 363 t~G~~L~~HL~kkH~f 378 (467)
T KOG3608|consen 363 TSGKSLSAHLMKKHGF 378 (467)
T ss_pred ccchhHHHHHHHhhcc
Confidence 9999999998776654
No 17
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=98.54 E-value=3.6e-08 Score=129.78 Aligned_cols=177 Identities=19% Similarity=0.211 Sum_probs=149.8
Q ss_pred cCCCCCccccCCCC-----C-CcccCCCCCCCCcccceeeeccccccccceecCCCceeeEEeeeCCCeEEEEecCccHH
Q 000392 298 SNSPWNLQVISRSP-----G-SLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAF 371 (1581)
Q Consensus 298 ~~~pWNL~nLp~~~-----g-SLL~~l~~dI~GVntP~LYiGm~fStf~WH~ED~~L~SINY~H~GapK~WY~VP~~~a~ 371 (1581)
.-.||...-.-.++ | ++|.++.+.+-||++.++|+..+++.+.-|.|+..+.++|.++..+.+.||+||.+++.
T Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~n~~~~~~k~~~~rt~~~~~n~~~~s~~~n~~p~~~~~~~v~~~~~~ 682 (904)
T KOG1246|consen 603 SKLPWFGRVDGALPSLGFRGANLLEHAGEKILGMNTVQCYMKVPGSRTTAHQENSALASININLGPGDCVWFAVPLEYWG 682 (904)
T ss_pred hcchhhhhhhhhhcccccCCcchHHHHHHHhhcccccceeeccccccchhHHHHHHHhhhhccCCcccceeeecccchhH
Confidence 35567665554433 4 89999999999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHHHhhhcCCChhHHHHHhhhcCccccc-ChhHHHhCCCceEeeeccCCcEEEEcCCceeeeeccccceeeeeccCC
Q 000392 372 TFEEVIRNEAYGGDIDRLAALSLLGEKTTLI-SPEVIAASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANFGT 450 (1581)
Q Consensus 372 kFE~lmr~~~~~~~~d~~~~~~~L~h~~tli-sPe~L~~~GIpv~r~vQ~PGEfVVTfPgAYHsgfn~GfN~aEAVNFA~ 450 (1581)
.+++++.+.... +.-..+|. .-..|...+|++++++|++|++|.++.|+|||+...||..+.+||+++
T Consensus 683 ~~~~~~~~~~~~-----------~~~~~~w~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~v~~ 751 (904)
T KOG1246|consen 683 VVEDACEKHNLK-----------YSDSSVWPSSEEELLNLVIPVQKFIQKAGDLVYVGNGTVHWVQVLGFCINVSWNVSE 751 (904)
T ss_pred HHHHHHhhcccc-----------ccchhccchhhHHHHhccchHHHHHhccccccccCCceEEEeeecCccccceecccc
Confidence 999999875211 01223444 667899999999999999999999999999999999999999999999
Q ss_pred hhHHHH--HHHHHHHHHHcCCCCCccHHHHHHHHHhh
Q 000392 451 PQWLMV--AKEAAVRRAAMNYLPMLSHQQLLYLLTMS 485 (1581)
Q Consensus 451 ~~WL~~--g~ea~e~~~~~~~~p~~sh~~LL~~~A~~ 485 (1581)
...-++ ....+.|.........+++..+-|.+|..
T Consensus 752 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (904)
T KOG1246|consen 752 STFAQLALALFRHDHNIESKHPSSVPMSFKVWEMAEK 788 (904)
T ss_pred cchhhhhcchhhhhhhhhccCcccchhhhhhhhHhhc
Confidence 987554 45556666667888999999999999975
No 18
>PHA00733 hypothetical protein
Probab=98.46 E-value=1.6e-07 Score=97.14 Aligned_cols=64 Identities=25% Similarity=0.371 Sum_probs=55.6
Q ss_pred HHHHhhhcCCCCcccCCCCCccccccChHHHHHHHhhcCCCCcccCCCCCCCCcccChhhHHHHHHHhCCC
Q 000392 1506 AIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHY 1576 (1581)
Q Consensus 1506 L~~HmrvHtgEKpfkC~~~iCGKsFs~kssL~~H~RiHTGEKPfkC~v~gCGKsF~~kSsLkrH~RkHhg~ 1576 (1581)
|.+|+.. .+.+||.| ..||+.|.....|..|++.| +.+|.|+. |++.|.....|.+|+.++|+.
T Consensus 62 l~~~~~~-~~~kPy~C--~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~--CgK~F~~~~sL~~H~~~~h~~ 125 (128)
T PHA00733 62 LYKLLTS-KAVSPYVC--PLCLMPFSSSVSLKQHIRYT--EHSKVCPV--CGKEFRNTDSTLDHVCKKHNI 125 (128)
T ss_pred HHhhccc-CCCCCccC--CCCCCcCCCHHHHHHHHhcC--CcCccCCC--CCCccCCHHHHHHHHHHhcCc
Confidence 5556444 45899999 78999999999999999987 46899999 999999999999999998874
No 19
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.38 E-value=6.2e-07 Score=111.28 Aligned_cols=107 Identities=21% Similarity=0.419 Sum_probs=86.9
Q ss_pred ccccCCCcccccCCCCCCcccChHHHHhhhhcc---ccCCCCCCccCChhHHHHHhhhcCCCCcccCCCCCcccccc---
Q 000392 1458 KKKILKGHHRCDLDGCRMSFETKRELSLHKRNR---CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFK--- 1531 (1581)
Q Consensus 1458 k~h~~~kpfkCe~e~CGKsF~sks~L~~H~r~h---c~Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs--- 1531 (1581)
+....++++.|+. |++.|. ...|..|+..+ +.|+ ||+.| .+..|..|+.+|.+.|++.|++ |++.|.
T Consensus 446 ~r~el~~H~~C~~--Cgk~f~-~s~LekH~~~~Hkpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~f--C~~~v~~g~ 518 (567)
T PLN03086 446 RVEEAKNHVHCEK--CGQAFQ-QGEMEKHMKVFHEPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRF--CGDMVQAGG 518 (567)
T ss_pred eccccccCccCCC--CCCccc-hHHHHHHHHhcCCCccCC-CCCCc-chhHHHhhhhccCCCCceeCCC--CCCccccCc
Confidence 3444566688995 999996 68899998853 6788 99765 6789999999999999999955 999985
Q ss_pred -------ChHHHHHHHhhcCCCCcccCCCCCCCCcccChhhHHHHHHHhCC
Q 000392 1532 -------WAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGH 1575 (1581)
Q Consensus 1532 -------~kssL~~H~RiHTGEKPfkC~v~gCGKsF~~kSsLkrH~RkHhg 1575 (1581)
..+.|..|...+ |.+++.|.. ||+.|..+ .+..|+...|.
T Consensus 519 ~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~--Cgk~Vrlr-dm~~H~~~~h~ 565 (567)
T PLN03086 519 SAMDVRDRLRGMSEHESIC-GSRTAPCDS--CGRSVMLK-EMDIHQIAVHQ 565 (567)
T ss_pred cccchhhhhhhHHHHHHhc-CCcceEccc--cCCeeeeh-hHHHHHHHhhc
Confidence 245899999986 999999998 99998864 67788776554
No 20
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.24 E-value=1.4e-06 Score=108.32 Aligned_cols=98 Identities=23% Similarity=0.440 Sum_probs=78.1
Q ss_pred ccccCCCCCCcccChHHHHhhhhccccCCCCCCccCChhHHHHHhhhcCCCCcccCCCCCccccccChHHHHHHHhhcCC
Q 000392 1466 HRCDLDGCRMSFETKRELSLHKRNRCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTG 1545 (1581)
Q Consensus 1466 fkCe~e~CGKsF~sks~L~~H~r~hc~Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs~kssL~~H~RiHTG 1545 (1581)
-.|+..+||..|. +..+.. |+.|+.|++.|. ...|..|++.|+ +++.| . ||+.+ .+..|..|+++|.+
T Consensus 434 V~Cp~~~Cg~v~~-r~el~~----H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~C--p-Cg~~~-~R~~L~~H~~thCp 501 (567)
T PLN03086 434 VVCPHDGCGIVLR-VEEAKN----HVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQC--P-CGVVL-EKEQMVQHQASTCP 501 (567)
T ss_pred eeCCcccccceee-cccccc----CccCCCCCCccc-hHHHHHHHHhcC--CCccC--C-CCCCc-chhHHHhhhhccCC
Confidence 3476446999883 333444 458999999996 678999999986 88999 7 99765 67899999999999
Q ss_pred CCcccCCCCCCCCcccC----------hhhHHHHHHHhCCCCC
Q 000392 1546 ERPYKCKFEGCGLSFRF----------VSDISRHRRKTGHYEN 1578 (1581)
Q Consensus 1546 EKPfkC~v~gCGKsF~~----------kSsLkrH~RkHhg~en 1578 (1581)
+||+.|+. |++.|.. .+.|..|...+ |.++
T Consensus 502 ~Kpi~C~f--C~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt 541 (567)
T PLN03086 502 LRLITCRF--CGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRT 541 (567)
T ss_pred CCceeCCC--CCCccccCccccchhhhhhhHHHHHHhc-CCcc
Confidence 99999999 9999952 45899998875 4443
No 21
>PHA02768 hypothetical protein; Provisional
Probab=97.87 E-value=6.9e-06 Score=73.41 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=29.1
Q ss_pred ccCCCCCccccccChHHHHHHHhhcCCCCcccCCCCCCCCcccChhhH
Q 000392 1519 LKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDI 1566 (1581)
Q Consensus 1519 fkC~~~iCGKsFs~kssL~~H~RiHTGEKPfkC~v~gCGKsF~~kSsL 1566 (1581)
|.| +.||+.|....+|..|+++|+ +||+|.. |++.|.+.+.|
T Consensus 6 y~C--~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~--C~k~f~~~s~l 47 (55)
T PHA02768 6 YEC--PICGEIYIKRKSMITHLRKHN--TNLKLSN--CKRISLRTGEY 47 (55)
T ss_pred cCc--chhCCeeccHHHHHHHHHhcC--CcccCCc--ccceeccccee
Confidence 567 567777777777777777776 5677766 77777766554
No 22
>PHA02768 hypothetical protein; Provisional
Probab=97.87 E-value=6.1e-06 Score=73.70 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=39.2
Q ss_pred ccCCCCCCccCChhHHHHHhhhcCCCCcccCCCCCccccccChHHHH
Q 000392 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWART 1537 (1581)
Q Consensus 1491 c~Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs~kssL~ 1537 (1581)
|.|+.||+.|...+.|..||++|+ ++|+| ..|++.|.+.+.|.
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc--~~C~k~f~~~s~l~ 48 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN--TNLKL--SNCKRISLRTGEYI 48 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC--CcccC--CcccceecccceeE
Confidence 789999999999999999999999 79999 78999999887663
No 23
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=97.74 E-value=7e-06 Score=96.93 Aligned_cols=122 Identities=22% Similarity=0.340 Sum_probs=89.0
Q ss_pred CCCcccccccccCCCcccccCCCCCCcccChHHHHhhhhcc--------------------------------------c
Q 000392 1450 SVPAPCQDKKKILKGHHRCDLDGCRMSFETKRELSLHKRNR--------------------------------------C 1491 (1581)
Q Consensus 1450 ss~L~~H~k~h~~~kpfkCe~e~CGKsF~sks~L~~H~r~h--------------------------------------c 1491 (1581)
...|.+|.....-.-.|+|. +|+|.|+...+|..|.|.| |
T Consensus 280 ~F~LAQHrC~RIV~vEYrCP--EC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~ 357 (500)
T KOG3993|consen 280 AFALAQHRCPRIVHVEYRCP--ECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIF 357 (500)
T ss_pred HHHHhhccCCeeEEeeecCC--cccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCcee
Confidence 34466777666666679998 7999999999999998743 6
Q ss_pred cCCCCCCccCChhHHHHHhhhcCCC---C---c----------------------------------------ccCCCCC
Q 000392 1492 PHEGCGKRFSSHKYAIIHQRVHDDE---R---P----------------------------------------LKCPWKG 1525 (1581)
Q Consensus 1492 ~Ce~CGKsFsskssL~~HmrvHtgE---K---p----------------------------------------fkC~~~i 1525 (1581)
.|..|+|.|.++.+|+.|+.+|+.. + + ..| ..
T Consensus 358 ~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~~p--p~ 435 (500)
T KOG3993|consen 358 SCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELELP--PY 435 (500)
T ss_pred ecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeeccccccCC--CC
Confidence 7999999999999999998877521 1 0 113 22
Q ss_pred ccccccChHHHHHHHhhcCCCCcccCCCCCCCCcccChhhHHHHHHHhCCCC
Q 000392 1526 CSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHYE 1577 (1581)
Q Consensus 1526 CGKsFs~kssL~~H~RiHTGEKPfkC~v~gCGKsF~~kSsLkrH~RkHhg~e 1577 (1581)
|+..+..+..--.|.+.-..+.-|.|.+ |...|....+|.+|+.+.|..+
T Consensus 436 ~~~ppsss~~sgg~~rlg~~~q~f~~ky--~~atfyss~~ltrhin~~Hpse 485 (500)
T KOG3993|consen 436 DGSPPSSSGSSGGYGRLGIAEQGFTCKY--CPATFYSSPGLTRHINKCHPSE 485 (500)
T ss_pred CCCCcccCCCCCccccccchhhcccccc--chHhhhcCcchHhHhhhcChHH
Confidence 5555555544444444444455688998 9999999999999998877543
No 24
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.59 E-value=3.2e-05 Score=59.24 Aligned_cols=26 Identities=54% Similarity=1.137 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCCCcccCCCCCCCCcccC
Q 000392 1535 ARTEHIRVHTGERPYKCKFEGCGLSFRF 1562 (1581)
Q Consensus 1535 sL~~H~RiHTGEKPfkC~v~gCGKsF~~ 1562 (1581)
+|.+|+++|+|+|||.|+. |++.|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~--C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPY--CGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESS--SSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCC--CcCeeCc
Confidence 4677888888888888887 8888763
No 25
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=97.29 E-value=6.1e-05 Score=89.27 Aligned_cols=111 Identities=20% Similarity=0.294 Sum_probs=76.1
Q ss_pred CCcccccCCCCCCcccChHHHHhhhhc-----cccCCCCCCccCChhHHHHHhhhcCCCCccc-CCCCCccc-cccChHH
Q 000392 1463 KGHHRCDLDGCRMSFETKRELSLHKRN-----RCPHEGCGKRFSSHKYAIIHQRVHDDERPLK-CPWKGCSM-SFKWAWA 1535 (1581)
Q Consensus 1463 ~kpfkCe~e~CGKsF~sks~L~~H~r~-----hc~Ce~CGKsFsskssL~~HmrvHtgEKpfk-C~~~iCGK-sFs~kss 1535 (1581)
...|.|.+ |...|.....|.+|..- -|.|++|+|.|.-..+|..|.|.|.-...-. -. ..=.+ .-.....
T Consensus 265 iGdyiCqL--CK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~-~~P~k~~~~~rae 341 (500)
T KOG3993|consen 265 IGDYICQL--CKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAG-SPPPKQAVETRAE 341 (500)
T ss_pred HHHHHHHH--HHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcC-CCChhhhhhhhhh
Confidence 34599997 99999999999999873 2899999999999999999999996332111 00 00000 1111111
Q ss_pred HHHHHhh--cCCCCcccCCCCCCCCcccChhhHHHHHHHhCCCCC
Q 000392 1536 RTEHIRV--HTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHYEN 1578 (1581)
Q Consensus 1536 L~~H~Ri--HTGEKPfkC~v~gCGKsF~~kSsLkrH~RkHhg~en 1578 (1581)
.+.-.|. ...+--|.|.+ |+|.|++...|++|+.+|+...+
T Consensus 342 ~~ea~rsg~dss~gi~~C~~--C~KkFrRqAYLrKHqlthq~~~~ 384 (500)
T KOG3993|consen 342 VQEAERSGDDSSSGIFSCHT--CGKKFRRQAYLRKHQLTHQRAPL 384 (500)
T ss_pred hhhccccCCcccCceeecHH--hhhhhHHHHHHHHhHHhhhcccc
Confidence 1111111 12234799999 99999999999999999986543
No 26
>PHA00733 hypothetical protein
Probab=97.27 E-value=0.0004 Score=72.30 Aligned_cols=77 Identities=16% Similarity=0.105 Sum_probs=63.8
Q ss_pred CCCcccccCCCCCCcccChHHHHhh------hh----ccccCCCCCCccCChhHHHHHhhhcCCCCcccCCCCCcccccc
Q 000392 1462 LKGHHRCDLDGCRMSFETKRELSLH------KR----NRCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFK 1531 (1581)
Q Consensus 1462 ~~kpfkCe~e~CGKsF~sks~L~~H------~r----~hc~Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs 1531 (1581)
..+++.|.+ |++.|.....|..| +. .+|.|+.||+.|.....|..|++.| ..+|.| ..|++.|.
T Consensus 37 ~~~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C--~~CgK~F~ 110 (128)
T PHA00733 37 EQKRLIRAV--VKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVC--PVCGKEFR 110 (128)
T ss_pred hhhhHHHHH--HhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccC--CCCCCccC
Confidence 356788986 99988887777665 12 2589999999999999999999987 457999 77999999
Q ss_pred ChHHHHHHHhhcC
Q 000392 1532 WAWARTEHIRVHT 1544 (1581)
Q Consensus 1532 ~kssL~~H~RiHT 1544 (1581)
....|..|++.+.
T Consensus 111 ~~~sL~~H~~~~h 123 (128)
T PHA00733 111 NTDSTLDHVCKKH 123 (128)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999988643
No 27
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.04 E-value=0.0003 Score=53.95 Aligned_cols=26 Identities=38% Similarity=0.623 Sum_probs=23.6
Q ss_pred HHHHHhhhcCCCCcccCCCCCccccccC
Q 000392 1505 YAIIHQRVHDDERPLKCPWKGCSMSFKW 1532 (1581)
Q Consensus 1505 sL~~HmrvHtgEKpfkC~~~iCGKsFs~ 1532 (1581)
+|.+||++|+++|||.| ..|++.|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C--~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKC--PYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEE--SSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCC--CCCcCeeCc
Confidence 58999999999999999 779999974
No 28
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=96.71 E-value=0.0037 Score=73.84 Aligned_cols=105 Identities=21% Similarity=0.218 Sum_probs=80.2
Q ss_pred eeeeccccccccceecCCCceeeEEeeeCCCeEEEEecCccHHHHHHHHHhhhcCCChhHHHHHhhhcCcccccChhHHH
Q 000392 329 MVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEAYGGDIDRLAALSLLGEKTTLISPEVIA 408 (1581)
Q Consensus 329 ~LYiGm~fStf~WH~ED~~L~SINY~H~GapK~WY~VP~~~a~kFE~lmr~~~~~~~~d~~~~~~~L~h~~tlisPe~L~ 408 (1581)
-.|+|-.+|+++.|..=..-+|---+..|. |.|..+||....++.+....+-++ +.-..|.
T Consensus 201 Fvy~Gp~gSwtp~HaDVf~s~swS~nicG~-KrWl~~pP~qe~~l~dr~gnlp~~------------------~~~~~ld 261 (427)
T KOG2131|consen 201 FVYAGPAGSWTPFHADVFHSPSWSVNICGR-KRWLLYPPEQEQTLADRYGNLPLP------------------SWITKLD 261 (427)
T ss_pred EEEeccCCCCCccchhhhcCCcceeeeecc-eeEEEeChHHhhhhhhhccCcCCc------------------ccccccc
Confidence 479999999999997766666666666887 999999999877665554332121 2223455
Q ss_pred hCCCceEeeeccCCcEEEEcCCceeeeeccccceeeeeccCChh
Q 000392 409 ASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANFGTPQ 452 (1581)
Q Consensus 409 ~~GIpv~r~vQ~PGEfVVTfPgAYHsgfn~GfN~aEAVNFA~~~ 452 (1581)
....+.+.+.|+|||.|++--|=||.|.|.|-.++..=|..-..
T Consensus 262 ~~~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~ 305 (427)
T KOG2131|consen 262 LFRGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNAT 305 (427)
T ss_pred ccccchhhhhccCCceeeccCccccccccccceeeecccccccc
Confidence 66777799999999999999999999999999888876655443
No 29
>PHA00732 hypothetical protein
Probab=96.59 E-value=0.0017 Score=62.46 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=29.0
Q ss_pred ccCCCCCCccCChhHHHHHhhh-cCCCCcccCCCCCccccccChHHHHHHHhhcC
Q 000392 1491 CPHEGCGKRFSSHKYAIIHQRV-HDDERPLKCPWKGCSMSFKWAWARTEHIRVHT 1544 (1581)
Q Consensus 1491 c~Ce~CGKsFsskssL~~Hmrv-HtgEKpfkC~~~iCGKsFs~kssL~~H~RiHT 1544 (1581)
|.|..||+.|.+...|+.|++. |.+ +.| ..||+.|. .|..|.+++.
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C--~~CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARRNHTL---TKC--PVCNKSYR---RLNQHFYSQY 48 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhcccCC---Ccc--CCCCCEeC---ChhhhhcccC
Confidence 5677777777777777777763 442 467 55777776 3566665443
No 30
>PHA00616 hypothetical protein
Probab=96.53 E-value=0.0012 Score=56.98 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=26.8
Q ss_pred cccCCCCCccccccChHHHHHHHhhcCCCCcccCCC
Q 000392 1518 PLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKF 1553 (1581)
Q Consensus 1518 pfkC~~~iCGKsFs~kssL~~H~RiHTGEKPfkC~v 1553 (1581)
||+| ..||+.|.+++.|..|++.|+|++|+.|+.
T Consensus 1 pYqC--~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQC--LRCGGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred CCcc--chhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 5778 668888888888888888888888887764
No 31
>PHA00616 hypothetical protein
Probab=96.51 E-value=0.0012 Score=56.93 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=17.3
Q ss_pred ccCCCCCCccCChhHHHHHhhhcCCCCcccC
Q 000392 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKC 1521 (1581)
Q Consensus 1491 c~Ce~CGKsFsskssL~~HmrvHtgEKpfkC 1521 (1581)
|.|..||+.|..++.|..|++.|++++++.|
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~ 32 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL 32 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence 4555555555555555555555555555555
No 32
>PHA00732 hypothetical protein
Probab=96.28 E-value=0.0035 Score=60.41 Aligned_cols=46 Identities=30% Similarity=0.547 Sum_probs=26.8
Q ss_pred cccCCCCCccccccChHHHHHHHhh-cCCCCcccCCCCCCCCcccChhhHHHHHHHh
Q 000392 1518 PLKCPWKGCSMSFKWAWARTEHIRV-HTGERPYKCKFEGCGLSFRFVSDISRHRRKT 1573 (1581)
Q Consensus 1518 pfkC~~~iCGKsFs~kssL~~H~Ri-HTGEKPfkC~v~gCGKsF~~kSsLkrH~RkH 1573 (1581)
||.| ..||+.|.+...|..|++. |+ ++.|+. ||+.|. .|..|.+++
T Consensus 1 py~C--~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~--CgKsF~---~l~~H~~~~ 47 (79)
T PHA00732 1 MFKC--PICGFTTVTLFALKQHARRNHT---LTKCPV--CNKSYR---RLNQHFYSQ 47 (79)
T ss_pred CccC--CCCCCccCCHHHHHHHhhcccC---CCccCC--CCCEeC---Chhhhhccc
Confidence 4566 5566666666666666653 43 245665 666665 355565443
No 33
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.26 E-value=0.009 Score=66.59 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=69.1
Q ss_pred ccceeeeccccccccceecCCCceeeEEeeeCCCeEEEEecCccHHHHHHHHHhhhcCCChh--HHHHHhhhcCcccccC
Q 000392 326 TSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEAYGGDID--RLAALSLLGEKTTLIS 403 (1581)
Q Consensus 326 ntP~LYiGm~fStf~WH~ED~~L~SINY~H~GapK~WY~VP~~~a~kFE~lmr~~~~~~~~d--~~~~~~~L~h~~tlis 403 (1581)
...+|+||..++.+.||..- ...++.+..|. |.|+.+|+.+...+... ..... .....++ .....-..
T Consensus 131 ~~~~l~ig~~gs~t~lH~D~--~~n~~~~i~G~-K~~~L~pP~~~~~l~~~------~~~~~~~~~~~~d~-~~~d~~~~ 200 (251)
T PF13621_consen 131 QSSNLWIGPPGSFTPLHYDP--SHNLLAQIRGR-KRWILFPPDDSPNLYPR------PDSHGGTVFSWVDP-DNPDLERF 200 (251)
T ss_dssp CEEEEEEE-TTEEEEEEE-S--SEEEEEEEESE-EEEEEE-GGGGGGCTBE------TTTST-TCBBSS-T-TS--TTT-
T ss_pred cccEEEEeCCCceeeeeECc--hhhhhhccCCC-EEEEEECCccccccccc------eecccccceeeeec-cChhhhhh
Confidence 46689999999999999988 56778888888 99999999986544211 00000 0000000 00001111
Q ss_pred hhHHHhCCCceEeeeccCCcEEEEcCCceeeeecc---ccceeeeeccCCh
Q 000392 404 PEVIAASGIPCCRLVQNPGEFVVTFPRAYHAGFSH---GFNCGEAANFGTP 451 (1581)
Q Consensus 404 Pe~L~~~GIpv~r~vQ~PGEfVVTfPgAYHsgfn~---GfN~aEAVNFA~~ 451 (1581)
|.. ..++.+.++++|||.+++=+|-+|.+.|. +++++..++|-+.
T Consensus 201 p~~---~~~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 201 PKF---RKAPPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp CGG---GG--EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred hhh---ccCceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 221 12389999999999999999999999999 4688877777654
No 34
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.03 E-value=0.0019 Score=74.58 Aligned_cols=28 Identities=18% Similarity=0.490 Sum_probs=25.2
Q ss_pred CCCcccccCCCCCCcccChHHHHhhhhc
Q 000392 1462 LKGHHRCDLDGCRMSFETKRELSLHKRN 1489 (1581)
Q Consensus 1462 ~~kpfkCe~e~CGKsF~sks~L~~H~r~ 1489 (1581)
.++||+|++.+|.|.|.....|+.|+..
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lh 373 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLH 373 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhc
Confidence 3599999999999999999999999874
No 35
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=95.96 E-value=0.0025 Score=73.66 Aligned_cols=64 Identities=22% Similarity=0.547 Sum_probs=40.4
Q ss_pred CCCCCccCChhHHHHHhh-hcCCCCcccCCCCCccccccChHHHHHHHhhcCCCCcccCCCCCCCCcccChhhHHHHHH
Q 000392 1494 EGCGKRFSSHKYAIIHQR-VHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 1571 (1581)
Q Consensus 1494 e~CGKsFsskssL~~Hmr-vHtgEKpfkC~~~iCGKsFs~kssL~~H~RiHTGEKPfkC~v~gCGKsF~~kSsLkrH~R 1571 (1581)
+.|.|.+.....|+.|+. -|...+.+.-+-.+--..| -...|||.|++ |+|+++....|+-|+.
T Consensus 355 ~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F------------~~~~KPYrCev--C~KRYKNlNGLKYHr~ 419 (423)
T COG5189 355 EGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIF------------SAKDKPYRCEV--CDKRYKNLNGLKYHRK 419 (423)
T ss_pred CCchhhhccccchhhhhhccccCcccCCCCCccccccc------------cccCCceeccc--cchhhccCccceeccc
Confidence 457777777777777765 3444433332111111112 22469999999 9999999999988864
No 36
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=95.79 E-value=0.0066 Score=58.52 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=21.1
Q ss_pred cCCCCCCccCChhHHHHHhhhcCCCCcccCCCCCccccccChHHHHHHHhhcCCCCcccCCCCCCCCcccChhhHHHHHH
Q 000392 1492 PHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 1571 (1581)
Q Consensus 1492 ~Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs~kssL~~H~RiHTGEKPfkC~v~gCGKsF~~kSsLkrH~R 1571 (1581)
.|..|+..|.....|..||...++-..-. ...+.....+..+.+.-. ...+.|.. |++.|.+...|..|++
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~------~~~l~~~~~~~~~~~~~~-~~~~~C~~--C~~~f~s~~~l~~Hm~ 71 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPD------QKYLVDPNRLLNYLRKKV-KESFRCPY--CNKTFRSREALQEHMR 71 (100)
T ss_dssp -------------------------------------------------------SSEEBSS--SS-EESSHHHHHHHHH
T ss_pred Ccccccccccccccccccccccccccccc------cccccccccccccccccc-CCCCCCCc--cCCCCcCHHHHHHHHc
Confidence 36777777777777777776433321101 111223333333333211 12578887 8888888888888888
Q ss_pred HhCCCC
Q 000392 1572 KTGHYE 1577 (1581)
Q Consensus 1572 kHhg~e 1577 (1581)
.+++..
T Consensus 72 ~~~H~~ 77 (100)
T PF12756_consen 72 SKHHKK 77 (100)
T ss_dssp HTTTTC
T ss_pred CccCCC
Confidence 765544
No 37
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=95.39 E-value=0.023 Score=50.77 Aligned_cols=51 Identities=24% Similarity=0.549 Sum_probs=34.7
Q ss_pred cccCCCCCccccccChHHHHHHHhh-cCCC-CcccCCCCCCCCcccChhhHHHHHHHhCC
Q 000392 1518 PLKCPWKGCSMSFKWAWARTEHIRV-HTGE-RPYKCKFEGCGLSFRFVSDISRHRRKTGH 1575 (1581)
Q Consensus 1518 pfkC~~~iCGKsFs~kssL~~H~Ri-HTGE-KPfkC~v~gCGKsF~~kSsLkrH~RkHhg 1575 (1581)
.|.||+ |++.| ....|..|... |..+ +.+.|++ |...+. .+|.+|++.+|+
T Consensus 2 ~f~CP~--C~~~~-~~~~L~~H~~~~H~~~~~~v~CPi--C~~~~~--~~l~~Hl~~~H~ 54 (54)
T PF05605_consen 2 SFTCPY--CGKGF-SESSLVEHCEDEHRSESKNVVCPI--CSSRVT--DNLIRHLNSQHR 54 (54)
T ss_pred CcCCCC--CCCcc-CHHHHHHHHHhHCcCCCCCccCCC--chhhhh--hHHHHHHHHhcC
Confidence 377855 88844 45678888654 6554 4688887 887655 378888877664
No 38
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=95.01 E-value=0.013 Score=43.01 Aligned_cols=23 Identities=48% Similarity=0.967 Sum_probs=16.9
Q ss_pred ccCCCCCCCCcccChhhHHHHHHHh
Q 000392 1549 YKCKFEGCGLSFRFVSDISRHRRKT 1573 (1581)
Q Consensus 1549 fkC~v~gCGKsF~~kSsLkrH~RkH 1573 (1581)
|+|+. |++.|.++..|.+|++.|
T Consensus 1 y~C~~--C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPI--CGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETT--TTEEESSHHHHHHHHHHH
T ss_pred CCCCC--CCCccCCHHHHHHHHhHC
Confidence 56776 777777777777777764
No 39
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.45 E-value=0.028 Score=40.83 Aligned_cols=24 Identities=38% Similarity=0.837 Sum_probs=17.8
Q ss_pred ccCCCCCCCCcccChhhHHHHHHHhC
Q 000392 1549 YKCKFEGCGLSFRFVSDISRHRRKTG 1574 (1581)
Q Consensus 1549 fkC~v~gCGKsF~~kSsLkrH~RkHh 1574 (1581)
|+|+. |++.|.+...|.+|+++||
T Consensus 1 ~~C~~--C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPI--CGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SS--TS-EESSHHHHHHHHHHHS
T ss_pred CCCcC--CCCcCCcHHHHHHHHHhhC
Confidence 67887 8888888888888888775
No 40
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=93.85 E-value=0.029 Score=42.79 Aligned_cols=26 Identities=31% Similarity=0.784 Sum_probs=20.3
Q ss_pred cccCCCCCCCCcccChhhHHHHHHHhCC
Q 000392 1548 PYKCKFEGCGLSFRFVSDISRHRRKTGH 1575 (1581)
Q Consensus 1548 PfkC~v~gCGKsF~~kSsLkrH~RkHhg 1575 (1581)
||.|.. |++.|.+...|..|++.|++
T Consensus 1 ~~~C~~--C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDE--CGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETT--TTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCc--cCCccCChhHHHHHhHHhcC
Confidence 577887 88888888888888877764
No 41
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=93.35 E-value=0.036 Score=64.71 Aligned_cols=122 Identities=20% Similarity=0.196 Sum_probs=83.2
Q ss_pred ceeeeccccccccceecCCCceeeEEeeeCCCeEEEEecCccHHHHHHHHHhhhcCCChhHH-HHHhhhcCcccccChhH
Q 000392 328 PMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEAYGGDIDRL-AALSLLGEKTTLISPEV 406 (1581)
Q Consensus 328 P~LYiGm~fStf~WH~ED~~L~SINY~H~GapK~WY~VP~~~a~kFE~lmr~~~~~~~~d~~-~~~~~L~h~~tlisPe~ 406 (1581)
=|+-+|-..|.+.||+....+..-|-+..|. |.|.-+|+.--..+-++....+ +.+++.. .-+..+...+.+.+
T Consensus 181 RWfvmGParSGtsiHIDPlgTSAWNtll~Gh-KrW~LfPp~~p~~lvkv~~~e~-g~~~de~itwf~~~y~rt~~Ps--- 255 (407)
T KOG2130|consen 181 RWFVMGPARSGTSIHIDPLGTSAWNTLLQGH-KRWVLFPPGTPPELVKVTVDEG-GKQPDEIITWFSTIYPRTQLPS--- 255 (407)
T ss_pred eeEEecCCCCCceeEECCcchHHHHHHhhcc-ceeEEcCCCCCCCceeeccccc-CCCCcceechhhhccccccCCC---
Confidence 4899999999999999999999999999998 9999999986544443333221 1222210 00000001111000
Q ss_pred HHhCCCceEeeeccCCcEEEEcCCceeeeeccccceeeeeccCChhHHH
Q 000392 407 IAASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANFGTPQWLM 455 (1581)
Q Consensus 407 L~~~GIpv~r~vQ~PGEfVVTfPgAYHsgfn~GfN~aEAVNFA~~~WL~ 455 (1581)
+-. --.-.-++|.|||.|++--|=.|.++|.-..+|..-|||...=++
T Consensus 256 wp~-E~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 256 WPD-EYKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred Ccc-ccCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 001 122235789999999999999999999999999999999876444
No 42
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=92.81 E-value=0.06 Score=39.55 Aligned_cols=23 Identities=35% Similarity=0.545 Sum_probs=12.6
Q ss_pred ccCCCCCccccccChHHHHHHHhhc
Q 000392 1519 LKCPWKGCSMSFKWAWARTEHIRVH 1543 (1581)
Q Consensus 1519 fkC~~~iCGKsFs~kssL~~H~RiH 1543 (1581)
|.| ..|++.|..+..|..|++.|
T Consensus 1 y~C--~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKC--PICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEE--TTTTEEESSHHHHHHHHHHH
T ss_pred CCC--CCCCCccCCHHHHHHHHhHC
Confidence 345 44555555555555555543
No 43
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=92.55 E-value=0.17 Score=45.18 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=36.4
Q ss_pred ccCCCCCCccCChhHHHHHhhh-cCCC-CcccCCCCCccccccChHHHHHHHhhcC
Q 000392 1491 CPHEGCGKRFSSHKYAIIHQRV-HDDE-RPLKCPWKGCSMSFKWAWARTEHIRVHT 1544 (1581)
Q Consensus 1491 c~Ce~CGKsFsskssL~~Hmrv-HtgE-KpfkC~~~iCGKsFs~kssL~~H~RiHT 1544 (1581)
|.|+.|++. .+...|..|... |..+ +.+.| .+|...+. .+|..|++.+.
T Consensus 3 f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~C--PiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 3 FTCPYCGKG-FSESSLVEHCEDEHRSESKNVVC--PICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred cCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccC--CCchhhhh--hHHHHHHHHhc
Confidence 678999994 556789999774 6554 57999 66998654 48889988643
No 44
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=91.21 E-value=0.12 Score=37.57 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=8.1
Q ss_pred CccccccChHHHHHHHhh
Q 000392 1525 GCSMSFKWAWARTEHIRV 1542 (1581)
Q Consensus 1525 iCGKsFs~kssL~~H~Ri 1542 (1581)
.|++.|.+...|..|++.
T Consensus 5 ~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 5 ICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp STS-EESSHHHHHHHHHH
T ss_pred CCCCcCCcHHHHHHHHHh
Confidence 344444444444444443
No 45
>PF04704 Zfx_Zfy_act: Zfx / Zfy transcription activation region; InterPro: IPR006794 Zfx and Zfy are transcription factors implicated in mammalian sex determination. This region is found N-terminal to multiple copies of a C2H2 Zinc finger (IPR007087 from INTERPRO). This region has been shown to activate transcription when fused to a GAL4 DNA binding domain [].; GO: 0003677 DNA binding, 0046872 metal ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.38 E-value=0.3 Score=57.38 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=61.7
Q ss_pred cccccCCCcccccCCCCcccccccccCCCCCcccCcccccccccchhhhhhhccccccccccccccccccccccCccccc
Q 000392 1221 RMEVDQPSPLKVGGCSEVPIEICTKEDSGADMTLDPRTQLQNHTTAEAIMDELVCNSSAQLEENERIPASVAACSEESNG 1300 (1581)
Q Consensus 1221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~~~a~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~ 1300 (1581)
+++++-.++|.+.++.. .+-|-+++++-++| +|-.+- |..-++ .+|+++++++|++++++++ +
T Consensus 146 Kl~~~~~tpl~i~~ev~--~d~~k~De~g~EVI-----KVYIFK-Aea~eD--------dlGgTe~ItEsd~~ngh~~-~ 208 (330)
T PF04704_consen 146 KLDHEGDTPLTISTEVE--DDDVKKDEDGSEVI-----KVYIFK-AEAGED--------DLGGTEDITESDYENGHPV-E 208 (330)
T ss_pred cccccCCCceeeccccc--cccccccCCCCceE-----EEEEEe-cCCCCc--------cccceEEeeccCccCCCcc-e
Confidence 44555667888777765 44577777777743 233333 331112 5799999999999999976 4
Q ss_pred cccc---cccccccccccccccccCCCCC
Q 000392 1301 IFAE---EKMDFDMTIGTQTKNATSEEPK 1326 (1581)
Q Consensus 1301 ~~a~---e~~~~e~~v~~q~~~~~~EE~e 1326 (1581)
++++ ..+.+|+||||..+.+..|+..
T Consensus 209 ~~~~~~~~~~~REKMVYMaVkDs~qEeed 237 (330)
T PF04704_consen 209 VAESSGSGRVPREKMVYMAVKDSSQEEED 237 (330)
T ss_pred eecccCccccccceEEEEEcCCCcccccc
Confidence 4444 5799999999998877665554
No 46
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=90.26 E-value=0.19 Score=65.26 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=75.9
Q ss_pred eEEEEecCccHHHHHHHHHhhhcCCChhHHHHHhhhcCcccccChh----HHHhCCCceEeeeccCCcEEEEcCCceeee
Q 000392 360 KTWYAIPGDYAFTFEEVIRNEAYGGDIDRLAALSLLGEKTTLISPE----VIAASGIPCCRLVQNPGEFVVTFPRAYHAG 435 (1581)
Q Consensus 360 K~WY~VP~~~a~kFE~lmr~~~~~~~~d~~~~~~~L~h~~tlisPe----~L~~~GIpv~r~vQ~PGEfVVTfPgAYHsg 435 (1581)
-.|=..+..++.|++++++++-.+.......-.+=++.++|.+.-. ...+.||.-..|+|..||.||+-.||-|.+
T Consensus 740 ALWhIF~~~Dv~KireyL~k~~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQV 819 (889)
T KOG1356|consen 740 ALWHIFRAQDVPKIREYLRKVCKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQV 819 (889)
T ss_pred chhhhhhhcchHHHHHHHHHhhHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHh
Confidence 4899999999999999999863110000000011134556666653 234579999999999999999999999999
Q ss_pred eccccceeeeeccCChhHHHHHHHHH
Q 000392 436 FSHGFNCGEAANFGTPQWLMVAKEAA 461 (1581)
Q Consensus 436 fn~GfN~aEAVNFA~~~WL~~g~ea~ 461 (1581)
.|.--++..|.-|..|..+.....-.
T Consensus 820 rNLkSCikVa~DFVSPE~v~ec~rLT 845 (889)
T KOG1356|consen 820 RNLKSCIKVAEDFVSPEHVSECFRLT 845 (889)
T ss_pred hhhhhHHHHHHhhCChhhHHHHHHHH
Confidence 99999999999999999887544333
No 47
>smart00355 ZnF_C2H2 zinc finger.
Probab=89.04 E-value=0.35 Score=35.25 Aligned_cols=24 Identities=33% Similarity=0.707 Sum_probs=15.2
Q ss_pred ccCCCCCCCCcccChhhHHHHHHHhC
Q 000392 1549 YKCKFEGCGLSFRFVSDISRHRRKTG 1574 (1581)
Q Consensus 1549 fkC~v~gCGKsF~~kSsLkrH~RkHh 1574 (1581)
|.|.. |++.|.....|..|++.|.
T Consensus 1 ~~C~~--C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPE--CGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCC--CcchhCCHHHHHHHHHHhc
Confidence 45666 6666666666666666543
No 48
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=88.97 E-value=0.27 Score=47.41 Aligned_cols=72 Identities=21% Similarity=0.360 Sum_probs=21.0
Q ss_pred cccCCCCCCcccChHHHHhhhhccccCC-CCCCccCChhHHHHHhhhcCCCCcccCCCCCccccccChHHHHHHHhhc
Q 000392 1467 RCDLDGCRMSFETKRELSLHKRNRCPHE-GCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVH 1543 (1581)
Q Consensus 1467 kCe~e~CGKsF~sks~L~~H~r~hc~Ce-~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs~kssL~~H~RiH 1543 (1581)
.|.+ |+..|.+...|..|+...+.-. .....+.....+..+.+... ...+.| ..|++.|.....|..|++.+
T Consensus 1 ~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~C--~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 1 QCLF--CDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKV-KESFRC--PYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp ---------------------------------------------------SSEEB--SSSS-EESSHHHHHHHHHHT
T ss_pred Cccc--ccccccccccccccccccccccccccccccccccccccccccc-CCCCCC--CccCCCCcCHHHHHHHHcCc
Confidence 3665 9999999999999998643211 12223334444444443322 226899 66999999999999999964
No 49
>PRK04860 hypothetical protein; Provisional
Probab=88.35 E-value=0.23 Score=54.04 Aligned_cols=40 Identities=35% Similarity=0.746 Sum_probs=33.9
Q ss_pred CcccCCCCCccccccChHHHHHHHhhcCCCCcccCCCCCCCCcccChh
Q 000392 1517 RPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVS 1564 (1581)
Q Consensus 1517 KpfkC~~~iCGKsFs~kssL~~H~RiHTGEKPfkC~v~gCGKsF~~kS 1564 (1581)
-+|.| . |++ ....+++|.++|+++++|.|.. |++.|....
T Consensus 118 ~~Y~C--~-C~~---~~~~~rrH~ri~~g~~~YrC~~--C~~~l~~~~ 157 (160)
T PRK04860 118 FPYRC--K-CQE---HQLTVRRHNRVVRGEAVYRCRR--CGETLVFKG 157 (160)
T ss_pred EEEEc--C-CCC---eeCHHHHHHHHhcCCccEECCC--CCceeEEec
Confidence 36999 6 987 6677899999999999999998 999887643
No 50
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=87.90 E-value=0.31 Score=37.21 Aligned_cols=25 Identities=36% Similarity=0.667 Sum_probs=16.9
Q ss_pred cccCCCCCccccccChHHHHHHHhhcC
Q 000392 1518 PLKCPWKGCSMSFKWAWARTEHIRVHT 1544 (1581)
Q Consensus 1518 pfkC~~~iCGKsFs~kssL~~H~RiHT 1544 (1581)
||.| ..|++.|.....|..|++.|.
T Consensus 1 ~~~C--~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFEC--DECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEE--TTTTEEESSHHHHHHHHCTTT
T ss_pred CCCC--CccCCccCChhHHHHHhHHhc
Confidence 4667 567777777777777776653
No 51
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=87.64 E-value=0.22 Score=58.77 Aligned_cols=70 Identities=30% Similarity=0.460 Sum_probs=39.1
Q ss_pred ccCCCCCCccCChhHHHHHhh--hcCCC--CcccCCCCCccccccChHHHHHHHhhcCCCCcccCCCCCCCCcc
Q 000392 1491 CPHEGCGKRFSSHKYAIIHQR--VHDDE--RPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSF 1560 (1581)
Q Consensus 1491 c~Ce~CGKsFsskssL~~Hmr--vHtgE--KpfkC~~~iCGKsFs~kssL~~H~RiHTGEKPfkC~v~gCGKsF 1560 (1581)
+.|..|...|.....|..|.+ .|+++ +++.|++..|++.|.+...+.+|...|++.+++.|....|.+.+
T Consensus 290 ~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (467)
T COG5048 290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKF 363 (467)
T ss_pred CCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccc
Confidence 445555555666666666666 56666 66666322466666666666666666666555555443344443
No 52
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=86.66 E-value=2.9 Score=50.09 Aligned_cols=106 Identities=18% Similarity=0.254 Sum_probs=67.7
Q ss_pred cccceeeecccc-ccccceecCCCceeeEEeeeCCCeEEEEecCccHHHHHHHHHhhhcCCChhHHHHHhhhcCcccccC
Q 000392 325 VTSPMVYIGMLF-SWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEAYGGDIDRLAALSLLGEKTTLIS 403 (1581)
Q Consensus 325 VntP~LYiGm~f-Stf~WH~ED~~L~SINY~H~GapK~WY~VP~~~a~kFE~lmr~~~~~~~~d~~~~~~~L~h~~tlis 403 (1581)
...-.+|+.-.+ ..|++|..++...-|- ..| .|.|..-++.. .... +..+ .
T Consensus 113 ~~~~n~Y~tp~g~~g~~~H~D~~dvfvlQ--~~G-~K~W~l~~~~~-------------~~~~-------~~~~-----~ 164 (319)
T PF08007_consen 113 PVGANAYLTPPGSQGFGPHYDDHDVFVLQ--LEG-RKRWRLYPPPD-------------EPAP-------LYSD-----Q 164 (319)
T ss_dssp -EEEEEEEETSSBEESECEE-SSEEEEEE--EES--EEEEEE-SCC-------------CTTT-------SSCE------
T ss_pred ccceEEEecCCCCCCccCEECCcccEEEE--CCc-eeEEEECCCCc-------------cccc-------ccCC-----C
Confidence 456678999988 5899999998766543 344 59999988211 0000 0000 0
Q ss_pred hhHHHhCCCceEeeeccCCcEEEEcCCceeeeeccccceeeeeccCChhHHHHHH
Q 000392 404 PEVIAASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANFGTPQWLMVAK 458 (1581)
Q Consensus 404 Pe~L~~~GIpv~r~vQ~PGEfVVTfPgAYHsgfn~GfN~aEAVNFA~~~WL~~g~ 458 (1581)
+-...+..-|+..++-+|||+++.-+|.+|.+.+.|.++.-+++|.+++|..+..
T Consensus 165 ~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~dl~~ 219 (319)
T PF08007_consen 165 PFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWADLLE 219 (319)
T ss_dssp -TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHHHHH
T ss_pred CccccccCceeEEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhhHHH
Confidence 0011122367889999999999999999999999999999999999999988643
No 53
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=84.88 E-value=0.46 Score=56.03 Aligned_cols=125 Identities=18% Similarity=0.247 Sum_probs=68.7
Q ss_pred CCcccccc--cccCC--CcccccCCCCCCcccChHHHHhhhhcc-------ccCCCCCCccCChhHH-----HHHhhhcC
Q 000392 1451 VPAPCQDK--KKILK--GHHRCDLDGCRMSFETKRELSLHKRNR-------CPHEGCGKRFSSHKYA-----IIHQRVHD 1514 (1581)
Q Consensus 1451 s~L~~H~k--~h~~~--kpfkCe~e~CGKsF~sks~L~~H~r~h-------c~Ce~CGKsFsskssL-----~~HmrvHt 1514 (1581)
..+..|.+ .|..+ +++.|....|++.|.....+..|...| +.-..|.+.+.....- ..+.....
T Consensus 303 ~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (467)
T COG5048 303 SPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLK 382 (467)
T ss_pred ccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccCCCCccchhhccCcc
Confidence 34566777 78888 888888555999998888888887754 1112333333322221 11111112
Q ss_pred CCCcccCCCCCccccccChHHHHHHHhhcCCCCcccCCCCCCCCcccChhhHHHHHHHhCC
Q 000392 1515 DERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGH 1575 (1581)
Q Consensus 1515 gEKpfkC~~~iCGKsFs~kssL~~H~RiHTGEKPfkC~v~gCGKsF~~kSsLkrH~RkHhg 1575 (1581)
..+.+.|....|-..+.....+..|...|...+++.|....|.+.|.....+..|++.|.-
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (467)
T COG5048 383 NDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTN 443 (467)
T ss_pred CCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCccccccccccccc
Confidence 2333444444455555666666666555555554433333366666666666666655543
No 54
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=84.44 E-value=0.89 Score=40.86 Aligned_cols=31 Identities=26% Similarity=0.535 Sum_probs=14.8
Q ss_pred CCCcccCCCCCCCCcccChhhHHHHHHHhCCCC
Q 000392 1545 GERPYKCKFEGCGLSFRFVSDISRHRRKTGHYE 1577 (1581)
Q Consensus 1545 GEKPfkC~v~gCGKsF~~kSsLkrH~RkHhg~e 1577 (1581)
.+.|..|++ |+..+.+..+|++|+..+|+.+
T Consensus 21 S~~PatCP~--C~a~~~~srnLrRHle~~H~~k 51 (54)
T PF09237_consen 21 SEQPATCPI--CGAVIRQSRNLRRHLEIRHFKK 51 (54)
T ss_dssp TS--EE-TT--T--EESSHHHHHHHHHHHTTTS
T ss_pred cCCCCCCCc--chhhccchhhHHHHHHHHhccc
Confidence 344555655 6666666666666665555544
No 55
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=83.47 E-value=0.82 Score=41.07 Aligned_cols=40 Identities=15% Similarity=0.384 Sum_probs=23.1
Q ss_pred HHHhhh-cCCCCcccCCCCCccccccChHHHHHHHhhcCCCCc
Q 000392 1507 IIHQRV-HDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERP 1548 (1581)
Q Consensus 1507 ~~Hmrv-HtgEKpfkC~~~iCGKsFs~kssL~~H~RiHTGEKP 1548 (1581)
..|.+. +..+.|..| .+|+..+.+..+|++|+.++.+.||
T Consensus 12 ~~~~k~~~~S~~PatC--P~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 12 TKKPKSKSQSEQPATC--PICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp ----CCCCTTS--EE---TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred hhHHHHhhccCCCCCC--CcchhhccchhhHHHHHHHHhcccC
Confidence 444443 345678889 6699999999999999887777775
No 56
>smart00355 ZnF_C2H2 zinc finger.
Probab=83.00 E-value=1.1 Score=32.70 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=11.7
Q ss_pred CCccccccChHHHHHHHhhc
Q 000392 1524 KGCSMSFKWAWARTEHIRVH 1543 (1581)
Q Consensus 1524 ~iCGKsFs~kssL~~H~RiH 1543 (1581)
..|++.|.....|..|++.|
T Consensus 4 ~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 4 PECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCcchhCCHHHHHHHHHHh
Confidence 44666666666666665554
No 57
>PRK04860 hypothetical protein; Provisional
Probab=79.44 E-value=1.1 Score=49.08 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=33.8
Q ss_pred ccccCCCCCCccCChhHHHHHhhhcCCCCcccCCCCCccccccChH
Q 000392 1489 NRCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAW 1534 (1581)
Q Consensus 1489 ~hc~Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs~ks 1534 (1581)
..|.|. |++ ....+++|.++|+++++|.| ..|++.|....
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC--~~C~~~l~~~~ 157 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRC--RRCGETLVFKG 157 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCccEEC--CCCCceeEEec
Confidence 357887 887 67789999999999999999 78999887543
No 58
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=76.64 E-value=1.5 Score=32.73 Aligned_cols=24 Identities=33% Similarity=0.697 Sum_probs=15.6
Q ss_pred ccCCCCCCCCcccChhhHHHHHHHhCC
Q 000392 1549 YKCKFEGCGLSFRFVSDISRHRRKTGH 1575 (1581)
Q Consensus 1549 fkC~v~gCGKsF~~kSsLkrH~RkHhg 1575 (1581)
|+|+. |+.... ...|.+|++.||+
T Consensus 1 y~C~~--C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPH--CSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SS--SS-EES-HHHHHHHHHHHHS
T ss_pred CCCCC--CCCcCC-HHHHHHHHHhhCc
Confidence 56777 777766 7777777777654
No 59
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.61 E-value=3.2 Score=53.99 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=11.0
Q ss_pred CCCCCCccCChhHHHHHhhhc
Q 000392 1493 HEGCGKRFSSHKYAIIHQRVH 1513 (1581)
Q Consensus 1493 Ce~CGKsFsskssL~~HmrvH 1513 (1581)
|..|...|.....|.+|++.+
T Consensus 185 C~~C~~~fld~~el~rH~~~~ 205 (669)
T KOG2231|consen 185 CKFCHERFLDDDELYRHLRFD 205 (669)
T ss_pred chhhhhhhccHHHHHHhhccc
Confidence 444555555555555555543
No 60
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=72.81 E-value=1.9 Score=32.32 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=15.6
Q ss_pred ccCCCCCCCCcccChhhHHHHHHHh
Q 000392 1549 YKCKFEGCGLSFRFVSDISRHRRKT 1573 (1581)
Q Consensus 1549 fkC~v~gCGKsF~~kSsLkrH~RkH 1573 (1581)
|.|.+ |++.|.....|+.|++.+
T Consensus 1 ~~C~~--C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDI--CNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETT--TTEEESSHHHHHHHHTTH
T ss_pred CCCCC--CCCCcCCHHHHHHHHCcC
Confidence 45766 777777777777776543
No 61
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.16 E-value=1.1 Score=50.22 Aligned_cols=81 Identities=21% Similarity=0.420 Sum_probs=64.7
Q ss_pred CcccccCCCCCCcccChHHHHhhhhcc--ccCCCCCCccCChhHHHHHhh-hc---------CCCCcccCCCCCcccccc
Q 000392 1464 GHHRCDLDGCRMSFETKRELSLHKRNR--CPHEGCGKRFSSHKYAIIHQR-VH---------DDERPLKCPWKGCSMSFK 1531 (1581)
Q Consensus 1464 kpfkCe~e~CGKsF~sks~L~~H~r~h--c~Ce~CGKsFsskssL~~Hmr-vH---------tgEKpfkC~~~iCGKsFs 1531 (1581)
..|.|++..|.+.|..-.....|-... -.|..|.+.|.+...|..|+. .| .|.-.|.|.++.|+..|.
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFk 157 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHGNSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFK 157 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhcccchhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhh
Confidence 348899999999988777666665432 479999999999999999986 34 255679999899999999
Q ss_pred ChHHHHHHHh-hcC
Q 000392 1532 WAWARTEHIR-VHT 1544 (1581)
Q Consensus 1532 ~kssL~~H~R-iHT 1544 (1581)
+....+.|+- .|.
T Consensus 158 T~r~RkdH~I~~Hk 171 (253)
T KOG4173|consen 158 TSRDRKDHMIRMHK 171 (253)
T ss_pred hhhhhhhHHHHhcc
Confidence 9999999975 575
No 62
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=67.59 E-value=1.6 Score=59.42 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=23.6
Q ss_pred CCCcccCCCCCCCCcccChhhHHHHHHHh
Q 000392 1545 GERPYKCKFEGCGLSFRFVSDISRHRRKT 1573 (1581)
Q Consensus 1545 GEKPfkC~v~gCGKsF~~kSsLkrH~RkH 1573 (1581)
+-+||.|.. |...|..+.+|.+|+..-
T Consensus 515 ~~~p~~C~~--C~~stttng~LsihlqS~ 541 (1406)
T KOG1146|consen 515 PGKPYPCRA--CNYSTTTNGNLSIHLQSD 541 (1406)
T ss_pred CCCccccee--eeeeeecchHHHHHHHHH
Confidence 457899998 999999999999998764
No 63
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=65.15 E-value=3.6 Score=31.79 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=9.0
Q ss_pred cCCCCCCccCChhHHHHHhh
Q 000392 1492 PHEGCGKRFSSHKYAIIHQR 1511 (1581)
Q Consensus 1492 ~Ce~CGKsFsskssL~~Hmr 1511 (1581)
.|..|++.|.+...|..|++
T Consensus 3 ~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 3 YCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp BBTTTTBBBSSHHHHHCCTT
T ss_pred CcccCCCCcCCHHHHHHHHc
Confidence 34444444444444444443
No 64
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=64.08 E-value=4 Score=30.55 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=15.0
Q ss_pred ccCCCCCccccccChHHHHHHHhhc
Q 000392 1519 LKCPWKGCSMSFKWAWARTEHIRVH 1543 (1581)
Q Consensus 1519 fkC~~~iCGKsFs~kssL~~H~RiH 1543 (1581)
|.| .+|++.|.....|..|++.+
T Consensus 1 ~~C--~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYC--DICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEE--TTTTEEESSHHHHHHHHTTH
T ss_pred CCC--CCCCCCcCCHHHHHHHHCcC
Confidence 456 55777777777777776643
No 65
>KOG4377 consensus Zn-finger protein [General function prediction only]
Probab=61.35 E-value=4.4 Score=49.58 Aligned_cols=109 Identities=25% Similarity=0.451 Sum_probs=65.3
Q ss_pred CCcccccCCCCCCcccChHHHHhhhhc-------------------cccCCCCCCccCChhHHHHHhhhcCCCC------
Q 000392 1463 KGHHRCDLDGCRMSFETKRELSLHKRN-------------------RCPHEGCGKRFSSHKYAIIHQRVHDDER------ 1517 (1581)
Q Consensus 1463 ~kpfkCe~e~CGKsF~sks~L~~H~r~-------------------hc~Ce~CGKsFsskssL~~HmrvHtgEK------ 1517 (1581)
..+|.|--+.|+..+..+..+.+|... ||.-.+|.| +-+....|-..|+..+
T Consensus 269 rEhyhcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~n~Gfrr 345 (480)
T KOG4377|consen 269 REHYHCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRR 345 (480)
T ss_pred chhhcccCccccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccccCceec
Confidence 445778777788777777666666442 233367877 3455666777775332
Q ss_pred -cccCCCCCcc--ccccChHHHHHHHhhcCCCC------------------------cccCCCCCCCCcccChhhHHHHH
Q 000392 1518 -PLKCPWKGCS--MSFKWAWARTEHIRVHTGER------------------------PYKCKFEGCGLSFRFVSDISRHR 1570 (1581)
Q Consensus 1518 -pfkC~~~iCG--KsFs~kssL~~H~RiHTGEK------------------------PfkC~v~gCGKsF~~kSsLkrH~ 1570 (1581)
-|.| ..|| -+|.-...-.-|.+-+.++. -|.|...||+..|...+....|.
T Consensus 346 thfhC--~r~gCTdtfK~~khk~yh~kdda~~~dGfkkf~k~e~cay~gCkys~~cnhfhc~r~Gc~~tl~s~sqm~shk 423 (480)
T KOG4377|consen 346 THFHC--QRIGCTDTFKDSKHKPYHYKDDAGEIDGFKKFFKDENCAYTGCKYSGICNHFHCDRLGCEATLYSVSQMASHK 423 (480)
T ss_pred ceeEE--eccCCccccccccccccccCcchhhhhhhhhhhccccCCccCcccccceeeeeecccCCceEEEehhhhhhhh
Confidence 2667 3455 55542222222222222211 13466679999999999999999
Q ss_pred HHhCCC
Q 000392 1571 RKTGHY 1576 (1581)
Q Consensus 1571 RkHhg~ 1576 (1581)
|+|...
T Consensus 424 rkheRq 429 (480)
T KOG4377|consen 424 RKHERQ 429 (480)
T ss_pred hhhhhh
Confidence 988643
No 66
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=59.90 E-value=2.5 Score=34.02 Aligned_cols=26 Identities=23% Similarity=0.584 Sum_probs=17.1
Q ss_pred cccCCCCCCCCcccChhhHHHHHHHhCC
Q 000392 1548 PYKCKFEGCGLSFRFVSDISRHRRKTGH 1575 (1581)
Q Consensus 1548 PfkC~v~gCGKsF~~kSsLkrH~RkHhg 1575 (1581)
+|.|+. |++.|.....+..|++...+
T Consensus 3 ~~~C~~--C~~~~~~~~~~~~H~~gk~H 28 (35)
T smart00451 3 GFYCKL--CNVTFTDEISVEAHLKGKKH 28 (35)
T ss_pred CeEccc--cCCccCCHHHHHHHHChHHH
Confidence 466776 77777777777777655433
No 67
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=59.30 E-value=3.2 Score=32.07 Aligned_cols=22 Identities=18% Similarity=0.542 Sum_probs=14.0
Q ss_pred ccCCCCCCCCcccChhhHHHHHHH
Q 000392 1549 YKCKFEGCGLSFRFVSDISRHRRK 1572 (1581)
Q Consensus 1549 fkC~v~gCGKsF~~kSsLkrH~Rk 1572 (1581)
|.|.. |++.|.+...|..|++.
T Consensus 2 ~~C~~--C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDA--CDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTT--TTBBBSSHHHHHCCTTS
T ss_pred CCccc--CCCCcCCHHHHHHHHcc
Confidence 45666 66666666666666553
No 68
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=57.81 E-value=4 Score=46.64 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=38.3
Q ss_pred CCcccccCCCCCCcccChHHHHhhhh-ccccCCCCCCccCChhHHHHHh-hhcC
Q 000392 1463 KGHHRCDLDGCRMSFETKRELSLHKR-NRCPHEGCGKRFSSHKYAIIHQ-RVHD 1514 (1581)
Q Consensus 1463 ~kpfkCe~e~CGKsF~sks~L~~H~r-~hc~Ce~CGKsFsskssL~~Hm-rvHt 1514 (1581)
.+++ |=+ |.+.|....-|..|++ .||+|.+|.|.+.+--.|..|- .+|.
T Consensus 9 ~kpw-cwy--cnrefddekiliqhqkakhfkchichkkl~sgpglsihcmqvhk 59 (341)
T KOG2893|consen 9 DKPW-CWY--CNREFDDEKILIQHQKAKHFKCHICHKKLFSGPGLSIHCMQVHK 59 (341)
T ss_pred CCce-eee--cccccchhhhhhhhhhhccceeeeehhhhccCCCceeehhhhhh
Confidence 4556 553 9999999999999988 6899999999877777777663 3553
No 69
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=53.78 E-value=8.8 Score=46.07 Aligned_cols=73 Identities=26% Similarity=0.417 Sum_probs=42.1
Q ss_pred cCCCCCCccCChhHHHHHhhhcCCCCcccCCCCCccc-------cccChHHHHHHHhhcCCCCcccCCCCCC--CC--cc
Q 000392 1492 PHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSM-------SFKWAWARTEHIRVHTGERPYKCKFEGC--GL--SF 1560 (1581)
Q Consensus 1492 ~Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGK-------sFs~kssL~~H~RiHTGEKPfkC~v~gC--GK--sF 1560 (1581)
.|..|.+.|-.-..|..|++..+ + .| .+|++ -|+.-..|.+|-+. --|.|.+-.| || .|
T Consensus 222 ~C~FC~~~FYdDDEL~~HcR~~H-E---~C--hICD~v~p~~~QYFK~Y~~Le~HF~~----~hy~ct~qtc~~~k~~vf 291 (493)
T COG5236 222 LCIFCKIYFYDDDELRRHCRLRH-E---AC--HICDMVGPIRYQYFKSYEDLEAHFRN----AHYCCTFQTCRVGKCYVF 291 (493)
T ss_pred hhhhccceecChHHHHHHHHhhh-h---hh--hhhhccCccchhhhhCHHHHHHHhhc----CceEEEEEEEecCcEEEe
Confidence 46777777777777777777432 2 35 44543 25555566666542 1255553223 23 57
Q ss_pred cChhhHHHHHHHhC
Q 000392 1561 RFVSDISRHRRKTG 1574 (1581)
Q Consensus 1561 ~~kSsLkrH~RkHh 1574 (1581)
.....|..|+.+.|
T Consensus 292 ~~~~el~~h~~~~h 305 (493)
T COG5236 292 PYHTELLEHLTRFH 305 (493)
T ss_pred ccHHHHHHHHHHHh
Confidence 77778888876544
No 70
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=48.67 E-value=13 Score=28.79 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=7.8
Q ss_pred CCCCCCccCChhHHHHHh
Q 000392 1493 HEGCGKRFSSHKYAIIHQ 1510 (1581)
Q Consensus 1493 Ce~CGKsFsskssL~~Hm 1510 (1581)
|+.||+.| ....|..|+
T Consensus 5 C~~CgR~F-~~~~l~~H~ 21 (25)
T PF13913_consen 5 CPICGRKF-NPDRLEKHE 21 (25)
T ss_pred CCCCCCEE-CHHHHHHHH
Confidence 44455555 334444443
No 71
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.20 E-value=27 Score=45.85 Aligned_cols=81 Identities=22% Similarity=0.307 Sum_probs=47.1
Q ss_pred ccccCCCCCCcccChHHHHhhhhc-cccCCCC------CCccCChhHHHHHhhhcCCCCcccCCCCCcc-cccc----Ch
Q 000392 1466 HRCDLDGCRMSFETKRELSLHKRN-RCPHEGC------GKRFSSHKYAIIHQRVHDDERPLKCPWKGCS-MSFK----WA 1533 (1581)
Q Consensus 1466 fkCe~e~CGKsF~sks~L~~H~r~-hc~Ce~C------GKsFsskssL~~HmrvHtgEKpfkC~~~iCG-KsFs----~k 1533 (1581)
-.|.. |...|.....|.+|++. |+.|..| +..|.....|..|.+.++ |.|.-..|- +.|. ..
T Consensus 183 p~C~~--C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~~~~f~~~~~~e 256 (669)
T KOG2231|consen 183 PLCKF--CHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCRTKKFYVAFELE 256 (669)
T ss_pred ccchh--hhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcC----ccccccccccceeeehhHHH
Confidence 34764 88888888888888885 4556555 345667777888877655 444111343 2333 33
Q ss_pred HHHHHHHhhcCCCCcccCC
Q 000392 1534 WARTEHIRVHTGERPYKCK 1552 (1581)
Q Consensus 1534 ssL~~H~RiHTGEKPfkC~ 1552 (1581)
..|++|.+.+.-++-|.|.
T Consensus 257 i~lk~~~~~~~~e~~~~~~ 275 (669)
T KOG2231|consen 257 IELKAHNRFIQHEKCYICR 275 (669)
T ss_pred HHHHhhccccchheeccCC
Confidence 4444444434445666664
No 72
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=46.29 E-value=3.9 Score=56.13 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=25.9
Q ss_pred hcCCCCcccCCCCCCCCcccChhhHHHHHHHhCCCC
Q 000392 1542 VHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHYE 1577 (1581)
Q Consensus 1542 iHTGEKPfkC~v~gCGKsF~~kSsLkrH~RkHhg~e 1577 (1581)
.|..-++| |.. |-..|.....|+.|+|..+|..
T Consensus 1323 ~~~d~~~~-c~~--c~~~~~~~~alqihm~~~~~~~ 1355 (1406)
T KOG1146|consen 1323 RVPDCTYH-CLA--CEVLLSGREALQIHMRSSAHRR 1355 (1406)
T ss_pred cCcccccc-chH--HHhhcchhHHHHHHHHHhhhcc
Confidence 34445567 998 9999999999999999866654
No 73
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=45.78 E-value=20 Score=43.18 Aligned_cols=86 Identities=22% Similarity=0.331 Sum_probs=59.3
Q ss_pred CCcccccccccCC----CcccccCCCCCCcccChHHHHhhhhc-cccCCCCCCc-------cCChhHHHHHhhhcCCCCc
Q 000392 1451 VPAPCQDKKKILK----GHHRCDLDGCRMSFETKRELSLHKRN-RCPHEGCGKR-------FSSHKYAIIHQRVHDDERP 1518 (1581)
Q Consensus 1451 s~L~~H~k~h~~~----kpfkCe~e~CGKsF~sks~L~~H~r~-hc~Ce~CGKs-------FsskssL~~HmrvHtgEKp 1518 (1581)
..|..|+..-..+ .+=.|.+ |.+-|.....|.+|++. |=.|.+|++. |..-..|-.|.+.- -
T Consensus 202 ~~Lr~H~~~G~~e~GFKGHP~C~F--C~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~----h 275 (493)
T COG5236 202 STLRDHKNGGLEEEGFKGHPLCIF--CKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNA----H 275 (493)
T ss_pred ccccccccCCccccCcCCCchhhh--ccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcC----c
Confidence 3355555433333 2335987 99999999999999995 5568888764 67777788887632 2
Q ss_pred ccCCCCCcc----ccccChHHHHHHHhh
Q 000392 1519 LKCPWKGCS----MSFKWAWARTEHIRV 1542 (1581)
Q Consensus 1519 fkC~~~iCG----KsFs~kssL~~H~Ri 1542 (1581)
|.|.+..|- ..|.....|..|+..
T Consensus 276 y~ct~qtc~~~k~~vf~~~~el~~h~~~ 303 (493)
T COG5236 276 YCCTFQTCRVGKCYVFPYHTELLEHLTR 303 (493)
T ss_pred eEEEEEEEecCcEEEeccHHHHHHHHHH
Confidence 677655553 358888888999753
No 74
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.00 E-value=8.7 Score=43.40 Aligned_cols=79 Identities=25% Similarity=0.458 Sum_probs=61.4
Q ss_pred ccCCCCCCccCChhHHHHHhhhcCCCCcccCCCCCccccccChHHHHHHHhh-c---------CCCCcccCCCCCCCCcc
Q 000392 1491 CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRV-H---------TGERPYKCKFEGCGLSF 1560 (1581)
Q Consensus 1491 c~Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs~kssL~~H~Ri-H---------TGEKPfkC~v~gCGKsF 1560 (1581)
|+-..|-+.|..-..+..|..+-++. .| ..|.+.|.+.-.|..|+.- | .|.--|+|-+.+|+-.|
T Consensus 82 cqvagc~~~~d~lD~~E~hY~~~h~~---sC--s~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KF 156 (253)
T KOG4173|consen 82 CQVAGCCQVFDALDDYEHHYHTLHGN---SC--SFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKF 156 (253)
T ss_pred ccccchHHHHhhhhhHHHhhhhcccc---hh--HHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhh
Confidence 33356888888888888887654444 69 6699999999999999763 3 24445999988999999
Q ss_pred cChhhHHHHHHHhC
Q 000392 1561 RFVSDISRHRRKTG 1574 (1581)
Q Consensus 1561 ~~kSsLkrH~RkHh 1574 (1581)
.+...-+.|+-..|
T Consensus 157 kT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 157 KTSRDRKDHMIRMH 170 (253)
T ss_pred hhhhhhhhHHHHhc
Confidence 99999999975544
No 75
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=40.78 E-value=18 Score=27.05 Aligned_cols=22 Identities=32% Similarity=0.547 Sum_probs=12.3
Q ss_pred ccCCCCCccccccChHHHHHHHhhc
Q 000392 1519 LKCPWKGCSMSFKWAWARTEHIRVH 1543 (1581)
Q Consensus 1519 fkC~~~iCGKsFs~kssL~~H~RiH 1543 (1581)
|+| ..|+.... ...|.+|++.|
T Consensus 1 y~C--~~C~y~t~-~~~l~~H~~~~ 22 (24)
T PF13909_consen 1 YKC--PHCSYSTS-KSNLKRHLKRH 22 (24)
T ss_dssp EE---SSSS-EES-HHHHHHHHHHH
T ss_pred CCC--CCCCCcCC-HHHHHHHHHhh
Confidence 456 44666665 66677776654
No 76
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=38.65 E-value=25 Score=27.27 Aligned_cols=19 Identities=26% Similarity=0.779 Sum_probs=11.7
Q ss_pred cCCCCCCCCcccChhhHHHHHH
Q 000392 1550 KCKFEGCGLSFRFVSDISRHRR 1571 (1581)
Q Consensus 1550 kC~v~gCGKsF~~kSsLkrH~R 1571 (1581)
+|+. ||+.| ....|.+|+.
T Consensus 4 ~C~~--CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPI--CGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCC--CCCEE-CHHHHHHHHH
Confidence 4665 66666 4556666654
No 77
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=36.44 E-value=11 Score=43.24 Aligned_cols=45 Identities=27% Similarity=0.449 Sum_probs=26.1
Q ss_pred CCCCCCccCChhHHHHHhhhcCCCCcccCCCCCccccccChHHHHHH-Hhhc
Q 000392 1493 HEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEH-IRVH 1543 (1581)
Q Consensus 1493 Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs~kssL~~H-~RiH 1543 (1581)
|=.|++.|....-|.+|++. |-|+| .+|.|.+-+--.|..| |++|
T Consensus 13 cwycnrefddekiliqhqka----khfkc--hichkkl~sgpglsihcmqvh 58 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKA----KHFKC--HICHKKLFSGPGLSIHCMQVH 58 (341)
T ss_pred eeecccccchhhhhhhhhhh----cccee--eeehhhhccCCCceeehhhhh
Confidence 44677777777777776653 23677 6676544444444444 3444
No 78
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=30.34 E-value=9.3 Score=46.03 Aligned_cols=71 Identities=21% Similarity=0.422 Sum_probs=47.9
Q ss_pred CCcccccCCCCCCcccChHHHHhhhhccccCCCCCCccCChhHHHHHhhhcCCCCcccCCCCCccccccChHHHHHH
Q 000392 1463 KGHHRCDLDGCRMSFETKRELSLHKRNRCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEH 1539 (1581)
Q Consensus 1463 ~kpfkCe~e~CGKsF~sks~L~~H~r~hc~Ce~CGKsFsskssL~~HmrvHtgEKpfkC~~~iCGKsFs~kssL~~H 1539 (1581)
.++|+|.+.+|++.+.....|+.|...-+ |...-.....-+-|+......|+|.| ++|.++++....|.-|
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h----~s~i~~~s~~~~ph~~~~~~nk~~r~--~i~~~~~k~~~~l~~~ 417 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGH----CSPITTPTPAPIPHQGFVVENKPYRC--EVCSKRYKNLNGLKYH 417 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCc----CCCCCCCCCCCCCcceeeeccCcccC--hhhhhhhccCCCCCce
Confidence 57899999999999999999999987422 22211111123334444556788999 6788888776666554
No 79
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=25.37 E-value=40 Score=36.16 Aligned_cols=23 Identities=30% Similarity=0.571 Sum_probs=14.6
Q ss_pred ccCCCCCCCCcccChhhHHHHHHHhCCC
Q 000392 1549 YKCKFEGCGLSFRFVSDISRHRRKTGHY 1576 (1581)
Q Consensus 1549 fkC~v~gCGKsF~~kSsLkrH~RkHhg~ 1576 (1581)
-.|-+ |||.|+. |++|.++|||-
T Consensus 73 i~cle--cGk~~k~---LkrHL~~~~gl 95 (132)
T PF05443_consen 73 IICLE--CGKKFKT---LKRHLRTHHGL 95 (132)
T ss_dssp EE-TB--T--EESB---HHHHHHHTT-S
T ss_pred eEEcc--CCcccch---HHHHHHHccCC
Confidence 45876 9998876 58898888774
No 80
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=24.57 E-value=33 Score=31.74 Aligned_cols=30 Identities=37% Similarity=0.621 Sum_probs=19.7
Q ss_pred CCCCcccCCCCCCCCcccChhhHHHHHHHhCC
Q 000392 1544 TGERPYKCKFEGCGLSFRFVSDISRHRRKTGH 1575 (1581)
Q Consensus 1544 TGEKPfkC~v~gCGKsF~~kSsLkrH~RkHhg 1575 (1581)
.||--+.|+. ||..|....++.+|..+.|+
T Consensus 13 DGE~~lrCPR--C~~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 13 DGEEFLRCPR--CGMVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred CCceeeeCCc--hhHHHHHhHHHHHHhhHHhh
Confidence 3555667766 77777777777777665443
No 81
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=24.35 E-value=58 Score=36.35 Aligned_cols=40 Identities=23% Similarity=0.477 Sum_probs=32.8
Q ss_pred CceEeeeccCCcEEEEcCCceeeeeccccceeeeecc-------CChhHHHH
Q 000392 412 IPCCRLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANF-------GTPQWLMV 456 (1581)
Q Consensus 412 Ipv~r~vQ~PGEfVVTfPgAYHsgfn~GfN~aEAVNF-------A~~~WL~~ 456 (1581)
=++|.+.-.+|++|.+-||.||| |.+.++-|| +++-|.+.
T Consensus 115 ~~~~~i~c~~gDLI~vP~gi~Hw-----Ftlt~~~~f~AvRlF~~~~gWVa~ 161 (181)
T COG1791 115 GKVYQIRCEKGDLISVPPGIYHW-----FTLTESPNFKAVRLFTEPEGWVAI 161 (181)
T ss_pred CcEEEEEEccCCEEecCCCceEE-----EEccCCCcEEEEEEeeCCCCceee
Confidence 47889999999999999999999 666666666 67778764
No 82
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=23.95 E-value=54 Score=26.29 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=18.7
Q ss_pred cccCCCCCccccccChHHHHHHHhh
Q 000392 1518 PLKCPWKGCSMSFKWAWARTEHIRV 1542 (1581)
Q Consensus 1518 pfkC~~~iCGKsFs~kssL~~H~Ri 1542 (1581)
+|.| +.|++.|.....+..|++.
T Consensus 3 ~~~C--~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYC--KLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEc--cccCCccCCHHHHHHHHCh
Confidence 4778 7799999988888888764
No 83
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=20.63 E-value=73 Score=38.82 Aligned_cols=103 Identities=22% Similarity=0.366 Sum_probs=62.8
Q ss_pred cccccCCCCCCcccChHHHHhhhhc--ccc---------------CCCCCCccCC-hhHHHHHhh-hcC-----------
Q 000392 1465 HHRCDLDGCRMSFETKRELSLHKRN--RCP---------------HEGCGKRFSS-HKYAIIHQR-VHD----------- 1514 (1581)
Q Consensus 1465 pfkCe~e~CGKsF~sks~L~~H~r~--hc~---------------Ce~CGKsFss-kssL~~Hmr-vHt----------- 1514 (1581)
.+.|-+ |.|.|+.+..|+.||+. |.. ...=||+... .+.+.+-.. -+.
T Consensus 195 r~~CLy--CekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~e 272 (423)
T KOG2482|consen 195 RLRCLY--CEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNE 272 (423)
T ss_pred hheeee--eccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhc
Confidence 477886 99999999999999994 211 0112333221 111110000 000
Q ss_pred -CCCc--ccCCCCCccccccChHHHHHHHhh-cCC-------C-------------------CcccCCCCCCCCcccChh
Q 000392 1515 -DERP--LKCPWKGCSMSFKWAWARTEHIRV-HTG-------E-------------------RPYKCKFEGCGLSFRFVS 1564 (1581)
Q Consensus 1515 -gEKp--fkC~~~iCGKsFs~kssL~~H~Ri-HTG-------E-------------------KPfkC~v~gCGKsF~~kS 1564 (1581)
+.-+ -+|.+ |....-+...|..||++ |.= + +.-.|-. |.-.|-...
T Consensus 273 d~a~a~~v~CLf--C~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~--cd~~F~~e~ 348 (423)
T KOG2482|consen 273 DDAEALSVVCLF--CTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAE--CDLSFWKEP 348 (423)
T ss_pred CCCCccceEEEe--eccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhcccccc--ccccccCcc
Confidence 1122 47844 99888889999999984 530 0 1123655 898999999
Q ss_pred hHHHHHHHh
Q 000392 1565 DISRHRRKT 1573 (1581)
Q Consensus 1565 sLkrH~RkH 1573 (1581)
.|..|+-.|
T Consensus 349 ~l~~hm~e~ 357 (423)
T KOG2482|consen 349 GLLIHMVED 357 (423)
T ss_pred hhhhhcccc
Confidence 999998653
Done!