Query 000392
Match_columns 1581
No_of_seqs 528 out of 2407
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 18:21:00 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000392.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_168-172//hhsearch_pdb/000392hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ox0_A JMJC domain-containing 1.0 1 1 640.2 18.1 313 18-483 33-347 (381)
2 3dxt_A JMJC domain-containing 1.0 1 1 629.2 18.0 314 16-482 13-328 (354)
3 3opt_A DNA damage-responsive t 1.0 1 1 613.9 10.6 307 19-466 12-356 (373)
4 3avr_A Lysine-specific demethy 1.0 1 1 401.7 21.7 217 299-547 228-451 (531)
5 4ask_A Lysine-specific demethy 1.0 1 1 396.3 21.4 217 297-547 208-426 (510)
6 2xxz_A Lysine-specific demethy 1.0 1 1 357.3 11.2 146 309-465 184-331 (332)
7 2i13_A AART; DNA binding, zinc 1.0 1 1 162.9 5.0 156 1418-1579 24-190 (190)
8 2i13_A AART; DNA binding, zinc 1.0 1 1 149.9 6.7 133 1441-1579 23-162 (190)
9 1tf6_A Protein (transcription 1.0 1 1 142.7 10.3 152 1420-1576 19-190 (190)
10 1tf6_A Protein (transcription 1.0 1 1 141.2 9.4 127 1449-1575 26-161 (190)
No 1
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=1.00 E-value=1 Score=640.20 Aligned_cols=313 Identities=29% Similarity=0.496 Sum_probs=263.1
Q ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHH-HHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999940047854311999999998973-0004518984999999844324545433222334698878898876432355
Q 000392 18 LPLAPVFYPTDTEFADPIAYISRIEKE-ASAFGICKIVPPLPKPSKKYVFGNLNKSLSKCSELGSDVNLPDAGTVATVGC 96 (1581)
Q Consensus 18 ~~~~p~~~Pt~~ef~dp~~yi~~i~~~-~~~~Gi~kivpP~~~Ps~k~~~~nl~ksl~~~~~~~~~~~~~~~~~~~~~~~ 96 (1581)
-..+||||||+|||+||++||++|++. |++|||||||||.+|.++.. +.
T Consensus 33 ~~~iPVF~PT~EEF~Df~~YI~kIe~~gA~~~GI~KIIPP~~W~p~~~-~~----------------------------- 82 (381)
T 2ox0_A 33 SARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRAS-YD----------------------------- 82 (381)
T ss_dssp TCCCEEECCCHHHHSCHHHHHHHHHHTTGGGGSEEEECCCTTCCSCSC-ST-----------------------------
T ss_pred CCCCCEECCCHHHHHCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCC-CC-----------------------------
T ss_conf 998746827999975999999999755666568610337756787555-22-----------------------------
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 67899875442011031113444100146677665221223432347975697869999899999540778999967899
Q 000392 97 CERGNEGEARAVFTTRHQELGQSVKRIKGVDNKDNLQLGAQKQVWQSGEVYTLEQFESKSKAFARSLLSVIKEVSPLVIE 176 (1581)
Q Consensus 97 ~~~~~~~~~~~~F~TR~Q~i~~~~kk~kg~~~~~~~~~~~~~~~~q~G~~YTL~~F~~~A~~F~~~~~~~~~~~s~~~iE 176 (1581)
...+++|++++||+... +.|.. .+....++.|||.+|+++|+.++ +......+.++||
T Consensus 83 ------~~~~~~i~~piqQ~~~g---~~g~~----------~~~~~~~k~~tl~~f~~~a~~~~---~~~p~~~~~~~lE 140 (381)
T 2ox0_A 83 ------DIDDLVIPAPIQQLVTG---QSGLF----------TQYNIQKKAMTVREFRKIANSDK---YCTPRYSEFEELE 140 (381)
T ss_dssp ------TCTTCEESSCEEEEEEE---ETTEE----------EEEEEECCCEEHHHHHHHHHSTT---TSCCCCSSHHHHH
T ss_pred ------HHHHCCCCCCCEEEECC---CCCCC----------CCCCCCCCCCCHHHHHHHHCCCC---CCCCCCCCHHHHH
T ss_conf ------16424257761355158---87653----------33456443358999999852134---4787667788999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 98340303696177517999999989997410121101122223221123687650235654200367865545578888
Q 000392 177 ALFWKAASEKPVYVEYANDVPGSGFGEPEGQFRYFHRRRRKVTSWKSYRNRGKADEKNIELESARNCHNDQITHSCDKND 256 (1581)
Q Consensus 177 ~~fWr~v~~~~i~VeYGaDi~GSgF~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1581)
++|||+|.. +.|+||+|++||+|+..
T Consensus 141 ~~fWr~v~~--~~~~YgaD~~gS~f~~~---------------------------------------------------- 166 (381)
T 2ox0_A 141 RKYWKNLTF--NPPIYGADVNGTLYEKH---------------------------------------------------- 166 (381)
T ss_dssp HHHHHHTTS--SCCEEEEEEECCCSCTT----------------------------------------------------
T ss_pred HHHHHHCCC--CCCEEECCCCCCCCCCC----------------------------------------------------
T ss_conf 999864776--88612147776557789----------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 89998899999999885532223455578887557546555699877655579999866579998998664446630454
Q 000392 257 LETPTSSTPSSTLPFDENSRSSRRKSVTGSNDVEGTAGWKLSNSPWNLQVISRSPGSLTRFMPDDIPGVTSPMVYIGMLF 336 (1581)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~pWNL~nlp~~~gSLL~~l~~dI~GVntP~LYIGm~f 336 (1581)
.++|||++||.+.++||++++.+|+|||+||||+||+|
T Consensus 167 ------------------------------------------~~~WNL~~Lp~ll~~ll~~~~~~I~GVn~P~LYiGm~~ 204 (381)
T 2ox0_A 167 ------------------------------------------VDEWNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWK 204 (381)
T ss_dssp ------------------------------------------CCSSCTTCCCCGGGHHHHHHCCCCBTTTSCEEEEECTT
T ss_pred ------------------------------------------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf ------------------------------------------99781532566777888753887878655438741456
Q ss_pred CCCCCEECCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHCCCCHHH-HHHHHHHCCCCCCCCHHHHHHCCCCEE
Q ss_conf 5431020688732257763089728999568428999999996313999237-778865169532359468871999667
Q 000392 337 SWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEAYGGDIDR-LAALSLLGEKTTLISPEVIAASGIPCC 415 (1581)
Q Consensus 337 Stf~WH~ED~~L~SINY~H~GapK~WY~VP~~~a~kfE~llk~~~~~~~~d~-~~~~~~L~h~~~lisPe~L~~~GIpv~ 415 (1581)
|+||||+||++||||||+|+|+||+||+||++++++||++|++.. ++. ..|.+||+|+++|++|+.|+++||||+
T Consensus 205 S~f~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~----P~~~~~~~~~L~h~~~~isP~~L~~~GIpv~ 280 (381)
T 2ox0_A 205 TSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFF----PGSAQSCEAFLRHKMTLISPLMLKKYGIPFD 280 (381)
T ss_dssp CEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHHS----HHHHHHCTTGGGGSCEEECHHHHHHTTCCCE
T ss_pred CCCCCEECCCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHC----HHHHHCCHHHHHCCCCCCCHHHHHHCCCCEE
T ss_conf 676733148865256786348863899638899999999999867----3544205577635540459999987799648
Q ss_pred EEECCCCCEEEECCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 41025884999858950244126642020013478257999999999999708899766899999998
Q 000392 416 RLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANFGTPQWLMVAKEAAVRRAAMNYLPMLSHQQLLYLLT 483 (1581)
Q Consensus 416 r~vQ~PGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~~WL~~g~ea~~~~~~~~~~p~is~~~LL~~lA 483 (1581)
+++|+|||||||||||||||||+||||+||||||+++|+++|..|.++.+... .-.++++.++..+-
T Consensus 281 r~vQ~pGEfViTfP~aYH~gfn~GfN~aEAvNFA~~~Wl~~g~~a~~c~c~~~-~v~i~~d~~~~~~~ 347 (381)
T 2ox0_A 281 KVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRKD-MVKISMDVFVRKFQ 347 (381)
T ss_dssp EEEECTTCEEEECTTCEEEEEECSSEEEEEEEECCTTHHHHHHHCCCCCSSTT-CCCCCCHHHHHHHC
T ss_pred EEEECCCCEEEECCCCEEEEECCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCC-CEEECHHHHHHHHC
T ss_conf 98756998899888737876427623877752473778887676652556577-31314999998738
No 2
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=1.00 E-value=1 Score=629.19 Aligned_cols=314 Identities=32% Similarity=0.536 Sum_probs=267.6
Q ss_pred CCCCCCCCCCCCHHHHCCHHHHHHHHHHHH-HHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 599999400478543119999999989730-0045189849999998443245454332223346988788988764323
Q 000392 16 QGLPLAPVFYPTDTEFADPIAYISRIEKEA-SAFGICKIVPPLPKPSKKYVFGNLNKSLSKCSELGSDVNLPDAGTVATV 94 (1581)
Q Consensus 16 ~~~~~~p~~~Pt~~ef~dp~~yi~~i~~~~-~~~Gi~kivpP~~~Ps~k~~~~nl~ksl~~~~~~~~~~~~~~~~~~~~~ 94 (1581)
......||||||+|||+||++||++|++++ +++||||||||++|.+++. +.
T Consensus 13 ~~~~~ipvF~PT~eEF~df~~Yi~~ie~~Ga~~~Gi~KIIPP~~W~~r~~-~~--------------------------- 64 (354)
T 3dxt_A 13 NPNCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARET-YD--------------------------- 64 (354)
T ss_dssp CTTCCCEEECCCTTGGGCHHHHHHHHHHTTGGGGSEEEECCCTTCCSSSC-ST---------------------------
T ss_pred CCCCCCCEECCCHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CC---------------------------
T ss_conf 99998643668999976999999999856554258501247410367644-13---------------------------
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 55678998754420110311134441001466776652212234323479756978699998999995407789999678
Q 000392 95 GCCERGNEGEARAVFTTRHQELGQSVKRIKGVDNKDNLQLGAQKQVWQSGEVYTLEQFESKSKAFARSLLSVIKEVSPLV 174 (1581)
Q Consensus 95 ~~~~~~~~~~~~~~F~TR~Q~i~~~~kk~kg~~~~~~~~~~~~~~~~q~G~~YTL~~F~~~A~~F~~~~~~~~~~~s~~~ 174 (1581)
...+.++++++||+... ++|. ..+.....+.||+.+|+++|+. ..+.+....++++
T Consensus 65 --------~~~~~~i~~pi~q~~~g---~~G~----------~~~~~~~~k~~t~~~f~~~a~~---~~~~~p~~~~~~~ 120 (354)
T 3dxt_A 65 --------NISEILIATPLQQVASG---RAGV----------FTQYHKKKKAMTVGEYRHLANS---KKYQTPPHQNFED 120 (354)
T ss_dssp --------TCTTCEESSCEEEEEEE---ETTE----------EEEEEEECCCEEHHHHHHHHTS---TTTSCCCCSSHHH
T ss_pred --------CHHCCCCCCCCEEEECC---CCCE----------EEEEEECCCCCCHHHHHHHHHH---HHCCCCCCCCHHH
T ss_conf --------05225236871555348---9845----------7772203675579999999766---3306998899899
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99983403036961775179999999899974101211011222232211236876502356542003678655455788
Q 000392 175 IEALFWKAASEKPVYVEYANDVPGSGFGEPEGQFRYFHRRRRKVTSWKSYRNRGKADEKNIELESARNCHNDQITHSCDK 254 (1581)
Q Consensus 175 iE~~fWr~v~~~~i~VeYGaDi~GSgF~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1581)
||++|||.+...+ ++||||++||+|+..
T Consensus 121 lE~~fW~~~~~~~--p~YgaD~~gS~F~~~-------------------------------------------------- 148 (354)
T 3dxt_A 121 LERKYWKNRIYNS--PIYGADISGSLFDEN-------------------------------------------------- 148 (354)
T ss_dssp HHHHHHHHGGGCC--CEEEEEEECCCSCTT--------------------------------------------------
T ss_pred HHHHHHHHCCCCC--CEEEECCCCCCCCCC--------------------------------------------------
T ss_conf 9999866334688--602314787636888--------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 88899988999999998855322234555788875575465556998776555799998665799989986644466304
Q 000392 255 NDLETPTSSTPSSTLPFDENSRSSRRKSVTGSNDVEGTAGWKLSNSPWNLQVISRSPGSLTRFMPDDIPGVTSPMVYIGM 334 (1581)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~pWNL~nlp~~~gSLL~~l~~dI~GVntP~LYIGm 334 (1581)
.++|||+|||.+.++||++++.+|+|||+||||+||
T Consensus 149 --------------------------------------------~~~WNL~~L~~~~~~Ll~~~~~~I~GVntP~LYiGm 184 (354)
T 3dxt_A 149 --------------------------------------------TKQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGM 184 (354)
T ss_dssp --------------------------------------------CCSSCTTSSCCHHHHHHHHHCCCCCCCCCCEEEEEC
T ss_pred --------------------------------------------CCHHHHHHCCCHHHHHHHHCCCCCCCCCCEEEEECC
T ss_conf --------------------------------------------551105443323677875147777875611065315
Q ss_pred CCCCCCCEECCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHCCCCHH-HHHHHHHHCCCCCCCCHHHHHHCCCC
Q ss_conf 54543102068873225776308972899956842899999999631399923-77788651695323594688719996
Q 000392 335 LFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEAYGGDID-RLAALSLLGEKTTLISPEVIAASGIP 413 (1581)
Q Consensus 335 ~fStf~WH~ED~~L~SINY~H~GapK~WY~VP~~~a~kfE~llk~~~~~~~~d-~~~~~~~L~h~~~lisPe~L~~~GIp 413 (1581)
+||+||||+||++|+||||+|+|+||+||+||++++++||++|++.. ++ ...|.+||+|++++++|+.|+++|||
T Consensus 185 ~~Stf~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~k~~~----p~~~~~c~~fL~h~~~lisP~~L~~~GIp 260 (354)
T 3dxt_A 185 WKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELF----PGSSRGCGAFLRHKVALISPTVLKENGIP 260 (354)
T ss_dssp TTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHHS----HHHHHHCTTGGGGCCEEECHHHHHHTTCC
T ss_pred CCCCCCCEECCCCCEEEEEEECCCCEEEEEECHHHHHHHHHHHHHHC----CHHHHHCHHHHHCCCCCCCHHHHHHCCCC
T ss_conf 36787514048855578887528860899938899999999999867----21221057887367544799999877996
Q ss_pred EEEEECCCCCEEEECCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 674102588499985895024412664202001347825799999999999970889976689999999
Q 000392 414 CCRLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANFGTPQWLMVAKEAAVRRAAMNYLPMLSHQQLLYLL 482 (1581)
Q Consensus 414 v~r~vQ~PGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~~WL~~g~ea~~~~~~~~~~p~is~~~LL~~l 482 (1581)
|++++|+||||||||||+||||||+||||+||||||+++||++|+.|.+..+.... ..|+++.++..+
T Consensus 261 v~~~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~g~~A~~C~C~~~~-v~i~~d~~~~~~ 328 (354)
T 3dxt_A 261 FNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQCSCGEAR-VTFSMDAFVRIL 328 (354)
T ss_dssp CEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCGGGHHHHHHCCCCCSSSCC-CCHHHHHHHHHH
T ss_pred EEEEEECCCCEEEECCCCEEEEEECCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCC-CEECHHHHHHHH
T ss_conf 18988679958998887367776365147675455867788762304036355766-336399998863
No 3
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=1.00 E-value=1 Score=613.92 Aligned_cols=307 Identities=30% Similarity=0.560 Sum_probs=237.5
Q ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999400478543119999999989730004518984999999844---32454543322233469887889887643235
Q 000392 19 PLAPVFYPTDTEFADPIAYISRIEKEASAFGICKIVPPLPKPSKK---YVFGNLNKSLSKCSELGSDVNLPDAGTVATVG 95 (1581)
Q Consensus 19 ~~~p~~~Pt~~ef~dp~~yi~~i~~~~~~~Gi~kivpP~~~Ps~k---~~~~nl~ksl~~~~~~~~~~~~~~~~~~~~~~ 95 (1581)
+.|||||||+|||+||.+||++|+++|+++||||||||++|.++. +...+|+.
T Consensus 12 ~~~pVF~PT~eeF~dF~~yi~~i~~~g~~~Gi~KVIPPkeW~~~~~~~~~~~~l~~------------------------ 67 (373)
T 3opt_A 12 GGVPVFKPTYEQFEDFYAYCKAINKYGMKSGVVKVIPPKEWKDKLDLPYSAETLQK------------------------ 67 (373)
T ss_dssp SSSEEECCCHHHHTCHHHHHHTTHHHHTTSSEEEECCCHHHHTTSCSSCCHHHHHH------------------------
T ss_pred CCCCEECCCHHHHHCHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCHHHHHC------------------------
T ss_conf 99873577999986999999999873411685788575444221457876768950------------------------
Q ss_pred CCCCCCCCCCCCEEECCCCCCC------------------------------CCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 5678998754420110311134------------------------------441001466776--65221223432347
Q 000392 96 CCERGNEGEARAVFTTRHQELG------------------------------QSVKRIKGVDNK--DNLQLGAQKQVWQS 143 (1581)
Q Consensus 96 ~~~~~~~~~~~~~F~TR~Q~i~------------------------------~~~kk~kg~~~~--~~~~~~~~~~~~q~ 143 (1581)
.++++++||.- +.+.+++.+... ...+.......-..
T Consensus 68 -----------~~i~~PI~Q~~~G~~G~~~~~nie~~r~~~~~q~k~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (373)
T 3opt_A 68 -----------IKIKSPIQQHISGNKGLFMVQNVEKNKTYNIIQWKDLSKDYVPPEDPKARRNSRKGSVSKSTKLKLKNF 136 (373)
T ss_dssp -----------CEEESCEEEEEEESSSEEEEEEEECSCEEEHHHHHHHTTSSCCCCC-----------------------
T ss_pred -----------CCCCCCCEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -----------737998179853897258886400256667899987655117875444322245666664333322334
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 97569786999989999954077899-9967899983403036-961775179999999899974101211011222232
Q 000392 144 GEVYTLEQFESKSKAFARSLLSVIKE-VSPLVIEALFWKAASE-KPVYVEYANDVPGSGFGEPEGQFRYFHRRRRKVTSW 221 (1581)
Q Consensus 144 G~~YTL~~F~~~A~~F~~~~~~~~~~-~s~~~iE~~fWr~v~~-~~i~VeYGaDi~GSgF~~~~~~~~~~~~~~~~~~~~ 221 (1581)
+..+|+++|+.+++.|... +....+ ...++||++|||.+.. .| .||||++||+|+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lE~~yW~~~~~~~p---~YgaD~~GS~F~~~----------------- 195 (373)
T 3opt_A 137 ESSFNIDDFEQFRTEYTID-LSDFQNTERLKFLEEYYWKTLNFTTP---MYGADTPGSIFPEG----------------- 195 (373)
T ss_dssp -CCCCHHHHHHHTTTSSCC-CTTSSCHHHHHHHHHHHHHTTTTSCC---EEEEEEECCCSCTT-----------------
T ss_pred CCCCCHHHHHHHHHHHCCC-HHHCCCCCHHHHHHHHHHHHCCCCCC---EEECCCCCCCCCCC-----------------
T ss_conf 4432267889988760644-55516720599999999875567886---67548988776899-----------------
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21123687650235654200367865545578888899988999999998855322234555788875575465556998
Q 000392 222 KSYRNRGKADEKNIELESARNCHNDQITHSCDKNDLETPTSSTPSSTLPFDENSRSSRRKSVTGSNDVEGTAGWKLSNSP 301 (1581)
Q Consensus 222 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 301 (1581)
.++
T Consensus 196 -----------------------------------------------------------------------------~~~ 198 (373)
T 3opt_A 196 -----------------------------------------------------------------------------LNV 198 (373)
T ss_dssp -----------------------------------------------------------------------------CCS
T ss_pred -----------------------------------------------------------------------------CCC
T ss_conf -----------------------------------------------------------------------------886
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEECCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 77655579999866579998998664446630454543102068873225776308972899956842899999999631
Q 000392 302 WNLQVISRSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEA 381 (1581)
Q Consensus 302 WNL~nlp~~~gSLL~~l~~dI~GVntP~LYIGm~fStf~WH~ED~~L~SINY~H~GapK~WY~VP~~~a~kfE~llk~~~ 381 (1581)
|||++|| +||++++.+|+|||+||||+||+||+||||+||++|+||||+|+|+||+||+||++++++||++|++..
T Consensus 199 WNL~~Lp----~lL~~l~~~I~GVntP~LYvGm~~Stf~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~k~~~ 274 (373)
T 3opt_A 199 WNVAKLP----NILDHMETKVPGVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSIPQEDRFKFYKFMQEQF 274 (373)
T ss_dssp SCTTSCC------------------CCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEECCGGGHHHHHHHHHHSS
T ss_pred CCHHHHH----HHHHHHCCCCCCCCHHHEEECCCCCCCCEEECCCCCEEEEEEECCCCEEEEEECHHHHHHHHHHHHHHC
T ss_conf 5854514----588874266798553106652656786513148845367776328870899948899999999999867
Q ss_pred CCCCHH-HHHHHHHHCCCCCCCCHHHHHHCCCCEEEEECCCCCEEEECCCCEEEEECCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 399923-7778865169532359468871999667410258849998589502441266420200134782579999999
Q 000392 382 YGGDID-RLAALSLLGEKTTLISPEVIAASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANFGTPQWLMVAKEA 460 (1581)
Q Consensus 382 ~~~~~d-~~~~~~~L~h~~~lisPe~L~~~GIpv~r~vQ~PGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~~WL~~g~ea 460 (1581)
++ ...|.+||+|+++|++|+.|+++||||++++|+|||||||||||||||||+||||+||||||+++||++|..|
T Consensus 275 ----p~~~~~c~~fL~h~~~lisP~~L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~g~~a 350 (373)
T 3opt_A 275 ----PEEAKNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGYHAGFNYGYNLAESVNFALEEWLPIGKKA 350 (373)
T ss_dssp ----HHHHSSCSSCTTTSCEEECHHHHHTTTCCCEEEEECTTCEEEECTTCCEEEEESSSEEEEEEEECCC---------
T ss_pred ----HHHHHHCHHHHHCCCCCCCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCCCHHHHHCCCCHHHHHHHCCC
T ss_conf ----1544307788617755589999986699628988779978998788358898667229888744837778762517
Q ss_pred HHHHHH
Q ss_conf 999997
Q 000392 461 AVRRAA 466 (1581)
Q Consensus 461 ~~~~~~ 466 (1581)
..+.+.
T Consensus 351 ~~C~C~ 356 (373)
T 3opt_A 351 GKCHCI 356 (373)
T ss_dssp ------
T ss_pred CCCCCC
T ss_conf 657355
No 4
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=1.00 E-value=1 Score=401.65 Aligned_cols=217 Identities=16% Similarity=0.190 Sum_probs=179.7
Q ss_pred CCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEECCCCCEEEEEEEECCCEEEEEECCCCHHHH
Q ss_conf 99877655579-----9998665799989986644466304545431020688732257763089728999568428999
Q 000392 299 NSPWNLQVISR-----SPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTF 373 (1581)
Q Consensus 299 ~~pWNL~nlp~-----~~gSLL~~l~~dI~GVntP~LYIGm~fStf~WH~ED~~L~SINY~H~GapK~WY~VP~~~a~kf 373 (1581)
...|||++||. ..||||+|++..|+|||+||||+||+||+||||+||++|+||||||+|++|+||+||++++++|
T Consensus 228 ~ql~el~kLP~~lr~~~~gslL~~~~~~I~Gvn~pqLYig~~gS~t~~H~E~~~l~SiNynhggg~~~Wy~VP~e~~~k~ 307 (531)
T 3avr_A 228 LQLHELTKLPAFVRVVSAGNLLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEGYWGVL 307 (531)
T ss_dssp HHHHHGGGSCGGGCSSCTTCGGGGSCSCCBTTSSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHH
T ss_pred HHHHHHHHCCHHHCCCCCCCHHHHCCCCCCCCCHHHEEEECCCCCCCCEECCCCCEEEEEECCCCCEEEEEECHHHHHHH
T ss_conf 99999875889770368644566368878886743357505755566454478451467530788748999678999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEEECCCCCEEEECCCCEEEEECCCCCEEEEECCCCHHH
Q ss_conf 99999631399923777886516953235946887199966741025884999858950244126642020013478257
Q 000392 374 EEVIRNEAYGGDIDRLAALSLLGEKTTLISPEVIAASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANFGTPQW 453 (1581)
Q Consensus 374 E~llk~~~~~~~~d~~~~~~~L~h~~~lisPe~L~~~GIpv~r~vQ~PGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~~W 453 (1581)
|+++++.. .+ +.+..+|++|+.|.++||||||++|+|||||||||||||||||+|||++||||||+++|
T Consensus 308 e~l~~k~~----~~-------~~~~~~~~~p~~L~~~gIPvyr~vQkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~ 376 (531)
T 3avr_A 308 NDFCEKNN----LN-------FLMGSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTA 376 (531)
T ss_dssp HHHHHHTT----CC-------TTTSCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCSSH
T ss_pred HHHHHHCC----CC-------HHHCEEECCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCEEEEEEEEECCCCH
T ss_conf 99999739----87-------21144306889998679975999977898899899843788745345465787056866
Q ss_pred HHHHH--HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999--9999999708899766899999998631036965653100000113479899999999999999999876899
Q 000392 454 LMVAK--EAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRSLLPGARSSRLRDRQKEERELLVKKAFVEDILKENNILS 531 (1581)
Q Consensus 454 L~~g~--ea~~~~~~~~~~p~is~~~LL~~lA~~~~~~~~~~l~~~l~~~~lr~r~k~e~e~~~k~~fl~~~~~~~~~l~ 531 (1581)
++++. +.++|++..++.++||+++|+|+||+..... +.+ ...++|..++..+.+.. .++
T Consensus 377 ~q~~~A~e~y~~Nk~~~~~sivp~~~L~wn~a~~~~~~---------------d~~---l~~~ik~~L~rsl~~~~-~~~ 437 (531)
T 3avr_A 377 CQYKLAVERYEWNKLQSVKSIVPMVHLSWNMARNIKVS---------------DPK---LFEMIKYCLLRTLKQCQ-TLR 437 (531)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSSCHHHHHHHHHHHCCCC---------------CHH---HHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC---------------CHH---HHHHHHHHHHHHHHHHH-HHH
T ss_conf 77999999999864405788788899999988655026---------------699---99999999999999999-999
Q ss_pred HHHHCCCCCCEEECCC
Q ss_conf 8840388531796158
Q 000392 532 VLLGRQSTFNAVLWNA 547 (1581)
Q Consensus 532 ~~~~~~~~~~~v~~~~ 547 (1581)
..+.+.|+. +.|.+
T Consensus 438 ~~l~~~g~~--i~~~~ 451 (531)
T 3avr_A 438 EALIAAGKE--IIWHG 451 (531)
T ss_dssp HHHHHTTCC--EEECC
T ss_pred HHHHHCCCE--EEECC
T ss_conf 999867977--87646
No 5
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=1.00 E-value=1 Score=396.34 Aligned_cols=217 Identities=18% Similarity=0.193 Sum_probs=179.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEECCCCCEEEEEEEECCCEEEEEECCCCHHHHHHH
Q ss_conf 56998776555799998665799989986644466304545431020688732257763089728999568428999999
Q 000392 297 LSNSPWNLQVISRSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEV 376 (1581)
Q Consensus 297 ~~~~pWNL~nlp~~~gSLL~~l~~dI~GVntP~LYIGm~fStf~WH~ED~~L~SINY~H~GapK~WY~VP~~~a~kfE~l 376 (1581)
+..-|+-|. |...|+||+|++..|+|||+||||+||+||+|+||+||++|+||||||+|++|+||+||++++.+||++
T Consensus 208 L~kLP~flr--~~~~gslLs~l~~~I~GVNtpqLYigm~gS~t~wH~Ed~~l~SINynhggg~c~WY~VP~e~~~k~e~l 285 (510)
T 4ask_A 208 LLKLPAFMR--VTSTGNMLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAF 285 (510)
T ss_dssp GGGSCGGGS--SSCTTBGGGGSSSCCTTTTSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHH
T ss_pred HHHCCHHHC--CCCCCCHHHHCCCCCCCCCHHHEEECCCCCCCCCEECCCCCEEEEEEECCCCEEEEEECHHHHHHHHHH
T ss_conf 850949767--588776455188767886763468704666655220677432278752688606999889999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEEECCCCCEEEECCCCEEEEECCCCCEEEEECCCCHHH--H
Q ss_conf 99631399923777886516953235946887199966741025884999858950244126642020013478257--9
Q 000392 377 IRNEAYGGDIDRLAALSLLGEKTTLISPEVIAASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANFGTPQW--L 454 (1581)
Q Consensus 377 lk~~~~~~~~d~~~~~~~L~h~~~lisPe~L~~~GIpv~r~vQ~PGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~~W--L 454 (1581)
+++.+ + +++ +..+|++|+.|+++||||||++|+|||||||||||||||||+|||+++|||||+++| +
T Consensus 286 ~~k~~----~------d~l-~~~~~pspe~L~kagIPvyr~iQkPGdfVit~PgtyH~Vqs~Gf~~niaWNvap~t~~ql 354 (510)
T 4ask_A 286 CDRHG----V------DYL-TGSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQY 354 (510)
T ss_dssp HHHTT----C------CTT-TSCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECBSSHHHH
T ss_pred HHHHC----C------CHH-HCCCCCCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCEEEEEEEEECCCCHHHH
T ss_conf 98748----1------256-515158999997589976999988998899899824789866700146787358988999
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999708899766899999998631036965653100000113479899999999999999999876899884
Q 000392 455 MVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRSLLPGARSSRLRDRQKEERELLVKKAFVEDILKENNILSVLL 534 (1581)
Q Consensus 455 ~~g~ea~~~~~~~~~~p~is~~~LL~~lA~~~~~~~~~~l~~~l~~~~lr~r~k~e~e~~~k~~fl~~~~~~~~~l~~~~ 534 (1581)
++|.++++|++..++.++||+++|+|+||......+++ ...++|...+..+.+....+..+.
T Consensus 355 qlA~e~y~~n~~~~~~SivPm~~L~Wn~Ar~~k~~d~~------------------l~~liK~~L~rSL~~~~~~~d~~~ 416 (510)
T 4ask_A 355 QLALERYEWNEVKNVKSIVPMIHVSWNVARTVKISDPD------------------LFKMIKFCLLQSMKHCQVQRESLV 416 (510)
T ss_dssp HHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHCCCCCHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999849686357599999987521015989------------------999999999999999999999998
Q ss_pred HCCCCCCEEECCC
Q ss_conf 0388531796158
Q 000392 535 GRQSTFNAVLWNA 547 (1581)
Q Consensus 535 ~~~~~~~~v~~~~ 547 (1581)
+.|.. +.|..
T Consensus 417 -~~g~~--i~~~~ 426 (510)
T 4ask_A 417 -RAGKK--IAYQG 426 (510)
T ss_dssp -HHTCC--EEECC
T ss_pred -HCCCE--EEECC
T ss_conf -67978--86558
No 6
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=357.35 Aligned_cols=146 Identities=22% Similarity=0.221 Sum_probs=133.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEECCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 99998665799989986644466304545431020688732257763089728999568428999999996313999237
Q 000392 309 RSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGAPKTWYAIPGDYAFTFEEVIRNEAYGGDIDR 388 (1581)
Q Consensus 309 ~~~gSLL~~l~~dI~GVntP~LYIGm~fStf~WH~ED~~L~SINY~H~GapK~WY~VP~~~a~kfE~llk~~~~~~~~d~ 388 (1581)
...||||+|++..|+|||+||||+||+||+||||+||++|+||||||+|++|+||+||++++.+||++|++.. ++
T Consensus 184 ~~~gslL~~~~~~I~Gvn~pqLYig~~gS~t~~H~Ed~~l~SiNynhgp~~~~Wy~VP~e~~~~~e~l~~k~~----~d- 258 (332)
T 2xxz_A 184 TSTGNMLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAFCDRHG----VD- 258 (332)
T ss_dssp TTTCCCSEETTEECCCTTSEEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHTT----CC-
T ss_pred CCCCCHHHHCCCCCCCCCHHHEEEECCCCCCCCEECCCCCEEEEEECCCCCEEEEEECHHHHHHHHHHHHHCC----CC-
T ss_conf 6753256626876788674455750676555515517734368862278761799977999999999998649----76-
Q ss_pred HHHHHHHCCCCCCCCHHHHHHCCCCEEEEECCCCCEEEECCCCEEEEECCCCCEEEEECCCCHHHHHH--HHHHHHHHH
Q ss_conf 77886516953235946887199966741025884999858950244126642020013478257999--999999999
Q 000392 389 LAALSLLGEKTTLISPEVIAASGIPCCRLVQNPGEFVVTFPRAYHAGFSHGFNCGEAANFGTPQWLMV--AKEAAVRRA 465 (1581)
Q Consensus 389 ~~~~~~L~h~~~lisPe~L~~~GIpv~r~vQ~PGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~~WL~~--g~ea~~~~~ 465 (1581)
+++..+|++|+.|.++||||||++|+|||||||||||||||||+|||+++|||||+++|+++ |.+.++|++
T Consensus 259 ------~~~~~~~~~p~~L~~~gIPvyr~~QkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~~q~~~a~erye~n~ 331 (332)
T 2xxz_A 259 ------YLTGSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQLALERYEWNE 331 (332)
T ss_dssp ------TTTSCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEEESCTTGGGGGC--------
T ss_pred ------HHHCEECCCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf ------3215021789999768997599997799889989985277874541247779717886789999999987614
No 7
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=1.00 E-value=1 Score=162.92 Aligned_cols=156 Identities=26% Similarity=0.443 Sum_probs=133.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH----HHCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC--
Q ss_conf 1112877668880457788765----20124678--899985332111368984013578879722594789866524--
Q 000392 1418 RSRAGKDAANTSEVDIRKIAEK----RATKTMRN--RESVPAPCQDKKKILKGHHRCDLDGCRMSFETKRELSLHKRN-- 1489 (1581)
Q Consensus 1418 rs~cgk~~~~~s~~~~~~~~~k----~~~k~~~k--~~ss~L~~H~k~H~~ekpykCeie~CGKsF~sks~Lk~Hkr~-- 1489 (1581)
+..|+..+.....+..|..... ..+..|.. .....|..|++.|.+.++|.|+. |++.|.....|..|++.
T Consensus 24 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~ 101 (190)
T 2i13_A 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPE--CGKSFSQRANLRAHQRTHT 101 (190)
T ss_dssp -------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTT--TCCEESCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHCCHHHHHHHHHHCCCCCCCCCCC--CCCCCCCHHHHHHHHHHCC
T ss_conf 88775410888999999997179988318985741188999999998638997846866--6775589999999999628
Q ss_pred ---CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf ---66678889855893689977520279986347998866644686789989763079975117988889843682369
Q 000392 1490 ---RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDI 1566 (1581)
Q Consensus 1490 ---hc~C~~CGKsF~skssL~~HmrvHtgeKpfkC~~~iCGKsFs~kssLk~HlrtHTGEKPf~C~v~~CGKsFs~kSsL 1566 (1581)
.+.|+.|++.|.....|..|++.|.++++|.| ..|++.|.....|..|+++|++++||.|++ |++.|.....|
T Consensus 102 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C--~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~--C~~~f~~~~~L 177 (190)
T 2i13_A 102 GEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC--PECGKSFSREDNLHTHQRTHTGEKPYKCPE--CGKSFSRRDAL 177 (190)
T ss_dssp TCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEEC--TTTCCEESCHHHHHHHHHHHHCCCCEECTT--TCCEESSHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEC--CCCCCCCCCHHHHHHHHHHCCCCCCEECCC--CCCCCCCHHHH
T ss_conf 99897698898765888999999997489998479--988845499999999997539998867898--99834889999
Q ss_pred HHHHHHHCCCCCC
Q ss_conf 9998781999899
Q 000392 1567 SRHRRKTGHYENL 1579 (1581)
Q Consensus 1567 kkH~rkHhg~enl 1579 (1581)
..|++.|+|.+++
T Consensus 178 ~~H~~~H~~~k~~ 190 (190)
T 2i13_A 178 NVHQRTHTGKKTS 190 (190)
T ss_dssp HHHHTTC------
T ss_pred HHHHHHCCCCCCC
T ss_conf 9999863898999
No 8
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=1.00 E-value=1 Score=149.93 Aligned_cols=133 Identities=31% Similarity=0.521 Sum_probs=119.1
Q ss_pred HCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 0124678--8999853321113689840135788797225947898665246-----66788898558936899775202
Q 000392 1441 ATKTMRN--RESVPAPCQDKKKILKGHHRCDLDGCRMSFETKRELSLHKRNR-----CPHEGCGKRFSSHKYAIIHQRVH 1513 (1581)
Q Consensus 1441 ~~k~~~k--~~ss~L~~H~k~H~~ekpykCeie~CGKsF~sks~Lk~Hkr~h-----c~C~~CGKsF~skssL~~HmrvH 1513 (1581)
.+..|.. .....|..|++.|.+.++|.|.. |++.|.....|..|++.| +.|+.|++.|.....|..|++.|
T Consensus 23 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h 100 (190)
T 2i13_A 23 ACPECGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100 (190)
T ss_dssp --------CCSSHHHHHGGGCC---CCEECTT--TCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC--CCCHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 58877541088899999999717998831898--5741188999999998638997846866677558999999999962
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 799863479988666446867899897630799751179888898436823699998781999899
Q 000392 1514 DDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHYENL 1579 (1581)
Q Consensus 1514 tgeKpfkC~~~iCGKsFs~kssLk~HlrtHTGEKPf~C~v~~CGKsFs~kSsLkkH~rkHhg~enl 1579 (1581)
.++++|.| ..|++.|.....|..|+++|++++||.|++ |++.|.....|..|++.|++.+++
T Consensus 101 ~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~ 162 (190)
T 2i13_A 101 TGEKPYAC--PECGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLHTHQRTHTGEKPY 162 (190)
T ss_dssp HTCCCEEC--TTTCCEESSHHHHHHHHHHHHCCCCEECTT--TCCEESCHHHHHHHHHHHHCCCCE
T ss_pred CCCCCCCC--CCCCCCCCCHHHHHHHHHHHCCCCCEECCC--CCCCCCCHHHHHHHHHHCCCCCCE
T ss_conf 89989769--889876588899999999748999847998--884549999999999753999886
No 9
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=1.00 E-value=1 Score=142.68 Aligned_cols=152 Identities=22% Similarity=0.373 Sum_probs=125.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHH----HC--CCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HCC
Q ss_conf 128776688804577887652----01--24678--8999853321113689840135788797225947898665-246
Q 000392 1420 RAGKDAANTSEVDIRKIAEKR----AT--KTMRN--RESVPAPCQDKKKILKGHHRCDLDGCRMSFETKRELSLHK-RNR 1490 (1581)
Q Consensus 1420 ~cgk~~~~~s~~~~~~~~~k~----~~--k~~~k--~~ss~L~~H~k~H~~ekpykCeie~CGKsF~sks~Lk~Hk-r~h 1490 (1581)
.|+..|.....+..|...... .+ ..|.+ .....|..|++.|.+.++|.|.+..|++.|.+...|..|+ +.|
T Consensus 19 ~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h 98 (190)
T 1tf6_A 19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 98 (190)
T ss_dssp TTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTS
T ss_pred CCCCHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99631088889999998639997765999997914489789999999723887630898998784589999999999826
Q ss_pred ------CCC--CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHCCCCCCCCCCCC-CCCCC
Q ss_conf ------667--88898558936899775202799863479988--66644686789989763079975117988-88984
Q 000392 1491 ------CPH--EGCGKRFSSHKYAIIHQRVHDDERPLKCPWKG--CSMSFKWAWARTEHIRVHTGERPYKCKFE-GCGLS 1559 (1581)
Q Consensus 1491 ------c~C--~~CGKsF~skssL~~HmrvHtgeKpfkC~~~i--CGKsFs~kssLk~HlrtHTGEKPf~C~v~-~CGKs 1559 (1581)
+.| +.|++.|.....|..|++.|+++++|.| .. |++.|.....|..|+++|++ |.|..+ .|++.
T Consensus 99 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C--~~~~C~k~F~~~~~L~~H~~~H~~---~~C~~~~~C~~~ 173 (190)
T 1tf6_A 99 NIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC--PHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFV 173 (190)
T ss_dssp STTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBC--CSSSCCCBCSSHHHHHHHHTSSCS---CCCCSTTTCCCC
T ss_pred CCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC--CCCCCCCHHCCHHHHHHHHHHHCC---CCCCCCCCCCCC
T ss_conf 777660167877886301998899999998688877518--978778300698899889977089---757889867774
Q ss_pred CCCHHHHHHHHHHHCCC
Q ss_conf 36823699998781999
Q 000392 1560 FRFVSDISRHRRKTGHY 1576 (1581)
Q Consensus 1560 Fs~kSsLkkH~rkHhg~ 1576 (1581)
|.....|.+|++.|++.
T Consensus 174 f~~~~~l~~H~~~h~~e 190 (190)
T 1tf6_A 174 GKTWTLYLKHVAECHQD 190 (190)
T ss_dssp CSCHHHHHHHHTTCC--
T ss_pred CCCHHHHHHHHHHHCCC
T ss_conf 44689999998762689
No 10
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=1.00 E-value=1 Score=141.24 Aligned_cols=127 Identities=24% Similarity=0.431 Sum_probs=111.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC-----CCCC--CCCCCCCCHHHHHHHH-HHC-CCCCCC
Q ss_conf 999853321113689840135788797225947898665246-----6678--8898558936899775-202-799863
Q 000392 1449 ESVPAPCQDKKKILKGHHRCDLDGCRMSFETKRELSLHKRNR-----CPHE--GCGKRFSSHKYAIIHQ-RVH-DDERPL 1519 (1581)
Q Consensus 1449 ~ss~L~~H~k~H~~ekpykCeie~CGKsF~sks~Lk~Hkr~h-----c~C~--~CGKsF~skssL~~Hm-rvH-tgeKpf 1519 (1581)
....|..|++.|.+.++|.|.+..|++.|.....|..|++.| +.|. .|++.|.....|..|+ +.| .+.++|
T Consensus 26 ~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~ 105 (190)
T 1tf6_A 26 KNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVY 105 (190)
T ss_dssp SHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCC
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 88899999986399977659999979144897899999997238876308989987845899999999998267776601
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 47998866644686789989763079975117988889843682369999878199
Q 000392 1520 KCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGH 1575 (1581)
Q Consensus 1520 kC~~~iCGKsFs~kssLk~HlrtHTGEKPf~C~v~~CGKsFs~kSsLkkH~rkHhg 1575 (1581)
.|++..|++.|.....|..|+++|++++||.|++..|++.|.+...|.+|++.|++
T Consensus 106 ~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~ 161 (190)
T 1tf6_A 106 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161 (190)
T ss_dssp EECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHCC
T ss_conf 67877886301998899999998688877518978778300698899889977089
Done!