Query 000393
Match_columns 1579
No_of_seqs 257 out of 423
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 07:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10513 EPL1: Enhancer of pol 99.8 1.8E-19 4E-24 180.9 7.4 151 1324-1485 4-160 (160)
2 PF09465 LBR_tudor: Lamin-B re 98.9 1.7E-09 3.7E-14 95.8 6.6 44 483-526 6-49 (55)
3 KOG0955 PHD finger protein BR1 98.7 8.7E-09 1.9E-13 129.3 6.3 172 1302-1492 29-207 (1051)
4 KOG2261 Polycomb enhancer prot 98.5 1.7E-08 3.6E-13 123.0 0.8 95 1415-1530 3-97 (716)
5 KOG0954 PHD finger protein [Ge 97.3 0.00013 2.8E-09 89.4 3.2 92 1394-1490 155-254 (893)
6 smart00333 TUDOR Tudor domain. 97.3 0.00052 1.1E-08 58.7 5.8 45 483-529 3-48 (57)
7 KOG2261 Polycomb enhancer prot 97.1 0.0001 2.2E-09 91.0 -0.5 306 1211-1555 316-630 (716)
8 cd04508 TUDOR Tudor domains ar 97.0 0.0013 2.9E-08 54.6 5.6 43 486-529 1-44 (48)
9 smart00743 Agenet Tudor-like d 97.0 0.0013 2.9E-08 57.6 5.7 36 484-520 4-39 (61)
10 COG5141 PHD zinc finger-contai 96.7 0.001 2.2E-08 79.2 3.1 61 1422-1488 113-173 (669)
11 PF09038 53-BP1_Tudor: Tumour 94.0 0.1 2.2E-06 53.7 5.9 44 482-526 2-45 (122)
12 KOG4675 Uncharacterized conser 93.6 0.025 5.3E-07 64.2 0.7 63 475-537 151-221 (273)
13 PF06003 SMN: Survival motor n 92.4 0.25 5.4E-06 55.8 6.4 49 482-530 68-117 (264)
14 PF05641 Agenet: Agenet domain 76.3 4.9 0.00011 36.9 4.9 35 485-520 3-40 (68)
15 PF15057 DUF4537: Domain of un 73.5 7.1 0.00015 40.1 5.8 42 486-528 1-42 (124)
16 PF00567 TUDOR: Tudor domain; 73.5 7.6 0.00017 36.2 5.6 47 482-529 51-98 (121)
17 KOG0954 PHD finger protein [Ge 73.2 2.9 6.2E-05 53.3 3.4 37 1495-1533 488-525 (893)
18 PF11717 Tudor-knot: RNA bindi 72.8 10 0.00022 33.8 5.8 44 485-529 3-51 (55)
19 PF07310 PAS_5: PAS domain; I 67.0 3.4 7.5E-05 41.9 2.0 39 1510-1550 4-42 (137)
20 KOG0644 Uncharacterized conser 63.4 8.4 0.00018 50.0 4.6 44 484-527 980-1035(1113)
21 PLN00104 MYST -like histone ac 48.6 24 0.00051 43.6 5.0 46 484-529 55-109 (450)
22 KOG1525 Sister chromatid cohes 39.6 1.3 2.7E-05 59.4 -7.8 75 464-538 966-1043(1266)
23 KOG1473 Nucleosome remodeling 39.0 31 0.00067 46.5 4.1 45 482-530 41-86 (1414)
24 PF08605 Rad9_Rad53_bind: Fung 37.7 61 0.0013 34.3 5.4 40 495-537 20-59 (131)
25 PF07039 DUF1325: SGF29 tudor- 34.5 1.1E+02 0.0024 32.1 6.6 62 463-524 47-114 (130)
26 KOG3026 Splicing factor SPF30 34.2 39 0.00084 39.0 3.5 41 482-522 90-131 (262)
27 PF08006 DUF1700: Protein of u 24.8 1.2E+02 0.0027 32.3 5.1 57 1450-1516 4-61 (181)
28 PF02237 BPL_C: Biotin protein 23.7 2E+02 0.0044 25.2 5.3 39 485-526 2-40 (48)
No 1
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=99.78 E-value=1.8e-19 Score=180.85 Aligned_cols=151 Identities=28% Similarity=0.412 Sum_probs=99.4
Q ss_pred eEEEE--EcCcccccccchhccccCCCccccc--ccccccCCCcccccCCCchhhhhh--HhhHHHhhccccCCcCCCCc
Q 000393 1324 WKLAV--KLSGTTRFSYKAHQFLQPGSTNRYT--HAMMWKGGKDWILEFPDRSQWALF--KEMHEECYNRNIRAASVKNI 1397 (1579)
Q Consensus 1324 wRIsI--KLdgiTrds~kAqqimepcnSNKeN--ha~~w~g~k~WkLEFpDksqw~lF--KEmheEC~eRNsrAsSvKeI 1397 (1579)
.+|.| +|.++...+.......+ +++|+.+ +.++-...+.-.+ .++.|..- +-+...--..+........|
T Consensus 4 ~~ld~~~~l~I~~~~d~~~~~~~~-~~~~~~~~~~~~~~gv~~~~~~---~~~e~e~~~q~~~~~~~~~~~~~~~~~~~I 79 (160)
T PF10513_consen 4 RRLDIKKPLPIFREEDLDDLDESE-DSSNKNQAVPQSPTGVEKEEKL---SKQEWEKHLQKPISASQNSKSKKKKEKKKI 79 (160)
T ss_pred CCCCCCCCeeEEechhcccccccc-cccccccccccccCCccchhhc---cccccccccccccchhhhhhcccccccccC
Confidence 45666 88888877777666666 7777664 2222222222111 11111000 00000000000001134679
Q ss_pred CCCcceeecCCCCCccccCcccCCCccEEeeccchhhccCCCccCCCCChhHHHHHHHHhcCCccCcCCCCCCCHHHHHH
Q 000393 1398 PIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDPSRVLYDMDSDDEQWLLKIRSSSEADDCGLSEISEEIFEK 1477 (1579)
Q Consensus 1398 PIP~VReVEdYD~~y~~~PFsRpPaSYIRfietdVEeALD~E~VEYDMDSEDEEWLeq~Nkk~krkndGs~qLSEDdFEk 1477 (1579)
|+|.++.++ |+..+. .+|.+ |.+||||+...+++ ++. .|+||||+||+.||+.+|++ ++..|..+||++.||.
T Consensus 80 P~P~~~~~~-~~~~~~-~~f~~-p~~yi~~~~~~~e~-~~~-~veYDmDeeD~~wL~~~N~~--r~~~~~~~ls~~~FE~ 152 (160)
T PF10513_consen 80 PTPSVRVVD-YEKPYS-PPFKR-PSSYIRFSEKSVED-LDE-GVEYDMDEEDEEWLELLNKK--RKSDGLEPLSEEDFEI 152 (160)
T ss_pred CCCceEEec-CcCCCC-CcccC-CccccccccCCHHH-hcc-CcCCCCchHHHHHHHHHHHH--hhhcCCCCCCHHHHHH
Confidence 999999888 888887 77999 89999999655665 343 69999999999999999995 4457788999999999
Q ss_pred HHHHHHhh
Q 000393 1478 IIDIFEKA 1485 (1579)
Q Consensus 1478 MMDRLEKe 1485 (1579)
|||+|||+
T Consensus 153 ~md~lEke 160 (160)
T PF10513_consen 153 IMDRLEKE 160 (160)
T ss_pred HHHHHhCC
Confidence 99999996
No 2
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=98.93 E-value=1.7e-09 Score=95.82 Aligned_cols=44 Identities=27% Similarity=0.441 Sum_probs=36.3
Q ss_pred ccccceEEEEcCCCCceEEEEEEEeeCCCCeEEEEccCCCceee
Q 000393 483 WVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWI 526 (1579)
Q Consensus 483 ~LVGrRVkVfWP~D~~WY~GtVtsYDp~tkkH~V~YDDGDeE~L 526 (1579)
.-.|.+|++|||+++.||+|+|++||+.+..|+|.|+||++..|
T Consensus 6 ~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~l 49 (55)
T PF09465_consen 6 FAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTELEL 49 (55)
T ss_dssp S-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EEEE
T ss_pred ccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEEEe
Confidence 34899999999999999999999999999999999999999444
No 3
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.74 E-value=8.7e-09 Score=129.29 Aligned_cols=172 Identities=17% Similarity=0.239 Sum_probs=121.3
Q ss_pred ecCcceeecCcEEEEEecCCceeEEEE--EcCcccccccchhccccCCCcccccccccccCCCcccccCCCchhhhhhHh
Q 000393 1302 HGDKGWRECGAQIALELFEHNEWKLAV--KLSGTTRFSYKAHQFLQPGSTNRYTHAMMWKGGKDWILEFPDRSQWALFKE 1379 (1579)
Q Consensus 1302 ~~DRcwRE~GA~VELEldGr~ewRIsI--KLdgiTrds~kAqqimepcnSNKeNha~~w~g~k~WkLEFpDksqw~lFKE 1379 (1579)
..|+=+=.+.-+++++++|+. ++|++ .+..+..+..+++.+.. |.+|+.|-..+-..-+.-..++ +.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~ 97 (1051)
T KOG0955|consen 29 RNDRFYAQATRMVELDTEGRV-FQISIFPPLGKVNEDLITTEEIFP-NKSVHVNKNWERPSFDIQEKEN---------KN 97 (1051)
T ss_pred cCceEEeccccccccccccce-eecccCCcccccchhhcccccccc-cccccccccccCCccchhhhcc---------cc
Confidence 566667778889999999999 99998 89999999999998766 8888886322222111111111 11
Q ss_pred hHHHhhccccCCc-----CCCCcCCCcceeecCCCCCccccCcccCCCccEEeeccchhhccCCCccCCCCChhHHHHHH
Q 000393 1380 MHEECYNRNIRAA-----SVKNIPIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDPSRVLYDMDSDDEQWLL 1454 (1579)
Q Consensus 1380 mheEC~eRNsrAs-----SvKeIPIP~VReVEdYD~~y~~~PFsRpPaSYIRfietdVEeALD~E~VEYDMDSEDEEWLe 1454 (1579)
...-|...++.-. .....|.+.++.++.+..... ..+ |..|++++.+.-+. ++.+ |+||||++|+.||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-p~~~~~~~~~~~~~-~~~e-~~y~~de~d~~wl~ 171 (1051)
T KOG0955|consen 98 NERPTLNKLSKDISPNAYTIPRSPQHKVREFELLRPMDA---PPR-PNFYYDEIEKSKET-LDEE-VEYDLDEEDYSWLD 171 (1051)
T ss_pred ccccchhhcccccCccccccccChhhhheeccccccccC---CCC-CCcchhhhccchhh-hccc-cccchHHHHHHHHh
Confidence 1111222222211 124567777777776655444 456 88999998875554 7766 99999999999999
Q ss_pred HHhcCCccCcCCCCCCCHHHHHHHHHHHHhhhcccCCC
Q 000393 1455 KIRSSSEADDCGLSEISEEIFEKIIDIFEKAAYSQQRD 1492 (1579)
Q Consensus 1455 q~Nkk~krkndGs~qLSEDdFEkMMDRLEKeSY~eqqd 1492 (1579)
.+|..+. ..+...++.+.||.+|||+||+++++..+
T Consensus 172 ~~n~~~~--~~~~~~v~~~~~~~~~dr~eke~~f~~~e 207 (1051)
T KOG0955|consen 172 IMNELRT--RNGVFDVSIDTFELLVDRLEKESYFKNYE 207 (1051)
T ss_pred hhhHHHh--hcCCccccccchhhhhhhHHHHHHhhhhh
Confidence 9998544 57788999999999999999999987643
No 4
>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]
Probab=98.55 E-value=1.7e-08 Score=122.98 Aligned_cols=95 Identities=25% Similarity=0.297 Sum_probs=76.2
Q ss_pred cCcccCCCccEEeeccchhhccCCCccCCCCChhHHHHHHHHhcCCccCcCCCCCCCHHHHHHHHHHHHhhhcccCCCCC
Q 000393 1415 VAFVRSSSKYFRQVETDVEMALDPSRVLYDMDSDDEQWLLKIRSSSEADDCGLSEISEEIFEKIIDIFEKAAYSQQRDQF 1494 (1579)
Q Consensus 1415 ~PFsRpPaSYIRfietdVEeALD~E~VEYDMDSEDEEWLeq~Nkk~krkndGs~qLSEDdFEkMMDRLEKeSY~eqqdvL 1494 (1579)
.+|.. |...|....- -||.+.++||||+|||.||... ..+.+.+||+|+||+|+.+.. ..+
T Consensus 3 ~~~k~-~r~~~~~~~~----~l~~~~p~yd~D~~de~~~s~~-----------~~s~~~~~e~~~dR~e~~s~~---~~i 63 (716)
T KOG2261|consen 3 KAAKM-PRQLIHGQPI----WLDREKPRYDHDSEDEDFLSVQ-----------MESKPLKFERMRDRLEKCSSH---QKI 63 (716)
T ss_pred ccccc-chhhhccccc----ccCCCCCcccccchhHHHhhhc-----------ccccchhHHHHhcccccCCcc---cee
Confidence 34555 5555544332 1788899999999999999982 258899999999999999953 368
Q ss_pred CHHHHHHHHhccCChHHHHHHHHHHHHHHhhcCCCc
Q 000393 1495 TSNEIEELMAGVGSMEAIKVIYEHWRQKRLKKGMPL 1530 (1579)
Q Consensus 1495 TlDEAeELLkdLgs~dVIKAVYEYWKsKRqKkGkPL 1530 (1579)
++.+++..|.+ ++.....||+||..||..+..|+
T Consensus 64 ~l~edk~~l~~--dd~~~v~~~e~~veK~~~~e~~~ 97 (716)
T KOG2261|consen 64 YLEEDKKDLDE--DDQRSVEVYEYWVEKREEKEVPS 97 (716)
T ss_pred cchhhhhcccc--ccceeeeeeehhhhhhhhhcccc
Confidence 99999888776 56688899999999999999996
No 5
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.31 E-value=0.00013 Score=89.36 Aligned_cols=92 Identities=30% Similarity=0.472 Sum_probs=73.9
Q ss_pred CCCcCCCcceeecCCCCCccccCcccCCCccEEeeccchh--------hccCCCccCCCCChhHHHHHHHHhcCCccCcC
Q 000393 1394 VKNIPIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVE--------MALDPSRVLYDMDSDDEQWLLKIRSSSEADDC 1465 (1579)
Q Consensus 1394 vKeIPIP~VReVEdYD~~y~~~PFsRpPaSYIRfietdVE--------eALD~E~VEYDMDSEDEEWLeq~Nkk~krknd 1465 (1579)
.-.||+|.|+.+.. + ..+..-|.+ |..||+....++. ++|..+.|.||+|.-|++||+.+|..+ .-.
T Consensus 155 pd~lpqp~v~~dse-~-v~~~~~fs~-pkkyivc~~~~~~e~~yn~~~~~lae~tcrydid~~d~awL~~~n~e~--~~~ 229 (893)
T KOG0954|consen 155 PDTLPQPSVRVDSE-D-VQPETDFSR-PKKYIVCSDGEVPELGYNLLIKDLAESTCRYDIDDMDPAWLQLVNEER--AEM 229 (893)
T ss_pred CCcCCCcceeccch-h-cchhhhhcC-CcceEEeCCCCCcccchhhhHHHHhhhhhhcccccccHHHHHHhcchH--Hhh
Confidence 35799999997652 2 224467999 9999999865422 345677899999999999999999854 468
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcccC
Q 000393 1466 GLSEISEEIFEKIIDIFEKAAYSQQ 1490 (1579)
Q Consensus 1466 Gs~qLSEDdFEkMMDRLEKeSY~eq 1490 (1579)
|...|.+-.||++|.-||..++.+.
T Consensus 230 G~~~l~~~~~eRiieelE~~c~kqi 254 (893)
T KOG0954|consen 230 GSLELDEGTFERIIEELERRCKKQI 254 (893)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999998754
No 6
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.29 E-value=0.00052 Score=58.73 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=40.5
Q ss_pred ccccceEEEEcCCCCceEEEEEEEeeCCCCeEEEEccC-CCceeeecC
Q 000393 483 WVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDD-RDEEWINLE 529 (1579)
Q Consensus 483 ~LVGrRVkVfWP~D~~WY~GtVtsYDp~tkkH~V~YDD-GDeE~L~Ls 529 (1579)
.-+|..|.+.| .|..||.|+|+.+++. +...|.|.| |..|++.+.
T Consensus 3 ~~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~~ 48 (57)
T smart00333 3 FKVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPPS 48 (57)
T ss_pred CCCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeHH
Confidence 34899999999 9999999999999988 889999988 999998754
No 7
>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]
Probab=97.10 E-value=0.0001 Score=90.97 Aligned_cols=306 Identities=18% Similarity=0.166 Sum_probs=214.4
Q ss_pred CCcCCccCCCcccccccccccCCCCCCCCceeEEEecCCC-CCCCCCCccccccCCCcchhhcccccccccccccccccC
Q 000393 1211 SSFGYLAHGWSVEKADVAHSSFGSAPKKPRTQVSYSLPFG-GYYSPKNRVNHQKGLPHMRIRRANEKRLSDVSRVSKKNL 1289 (1579)
Q Consensus 1211 ~sfG~~sh~Ws~~k~D~~~~~f~~gpKKpRTqVsYs~p~~-~~~ssk~k~h~qKg~~h~r~r~a~ekr~~d~~r~~~~~~ 1289 (1579)
..+=...|-|.-++.|++-. -=|-++++|+|..|-+ -.|..+ |+= +|--.+++ |......
T Consensus 316 ~~l~~~~~k~e~~~~d~~~s----~~k~r~~lt~~~~~rr~i~~~rr------------r~g-~g~rv~~d--r~~~~~d 376 (716)
T KOG2261|consen 316 QRLLEKAHKRENKKEDFDPD----KRKYRTCLTKLKKPRRCIGFARR------------RAG-RGGRVIPD--RKPNNED 376 (716)
T ss_pred hhHHHhhcchhccccccCcc----hhhhheeeeeccchhHHHHHHHH------------hhc-cCCccccc--cCCcCcC
Confidence 34445666777788888763 5678899999998874 112111 110 11112223 3344557
Q ss_pred CcccccccEEEEecCcceeecCcEEEEEecCCceeEEEEEcCcccccccchhccccCCCcccccccccccCCCcccccCC
Q 000393 1290 ELLPCDANVLIVHGDKGWRECGAQIALELFEHNEWKLAVKLSGTTRFSYKAHQFLQPGSTNRYTHAMMWKGGKDWILEFP 1369 (1579)
Q Consensus 1290 ds~~C~ANvLI~~~DRcwRE~GA~VELEldGr~ewRIsIKLdgiTrds~kAqqimepcnSNKeNha~~w~g~k~WkLEFp 1369 (1579)
+..+|.++.+..+.+++=|+.+..+.+...+-.+|-.+.+ ++.-.+++.+|.-++|-..+..|++..|+ +.|..+|.
T Consensus 377 d~~~~~~~~~~~~~~~~~q~~~~~~r~~~sn~k~~~~~~~-d~s~~~~~i~q~~~r~~~~~~~~l~d~~~--~E~~~r~~ 453 (716)
T KOG2261|consen 377 DFISSIDTTMTQSSLLRQQERTFSQRLSDSNLKEEQLASS-DLSQILSNIKQERLRPFQRRLINLQDVDN--DEWTSRKC 453 (716)
T ss_pred Ccccccccccccchhcccchhhhhhhccccccchhhcccc-ccccccccchheeecccccCccchhhccc--ccccchhh
Confidence 7899999999999999999999999999999999999999 99999999999999999999999999999 99999999
Q ss_pred CchhhhhhHhhHHHhhccccCCcCCCCcC-CCcceeecCCCCCccccCcccCCCccEEeeccchhhccCCCccCCCC--C
Q 000393 1370 DRSQWALFKEMHEECYNRNIRAASVKNIP-IPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDPSRVLYDM--D 1446 (1579)
Q Consensus 1370 Dksqw~lFKEmheEC~eRNsrAsSvKeIP-IP~VReVEdYD~~y~~~PFsRpPaSYIRfietdVEeALD~E~VEYDM--D 1446 (1579)
++..|.-|+.-..+||..+..-.....+| ++...--..|.+.. .-+.+|+..|+.+...+.-.+......-||| +
T Consensus 454 ~~~~~dk~~~~~~~~~~~~s~~~~~~~~~g~t~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~s~~~~~~~~~l~ 531 (716)
T KOG2261|consen 454 DREVPDKFKDAYIDCYENTSDKQSSRVGPGITESQGQTPFSQNA--PMQSQPLVSLQQLNASESLSASSNSIALYDSTLN 531 (716)
T ss_pred hhhcchhhccccccccccccccccccccCCccccCCCchHhhhh--hhhccchhhhhhhccchhhhccccchhhhhhhhc
Confidence 99999999988889999888766556663 33322222233333 3466767888887765554444455567775 3
Q ss_pred hhHHHHHHHHhcCCccCcCCCCCCCHHHHHHHHHHHHhhhcccCCCCCCHH-HHHHHHh-ccCChHHHHHHHHHHHHHHh
Q 000393 1447 SDDEQWLLKIRSSSEADDCGLSEISEEIFEKIIDIFEKAAYSQQRDQFTSN-EIEELMA-GVGSMEAIKVIYEHWRQKRL 1524 (1579)
Q Consensus 1447 SEDEEWLeq~Nkk~krkndGs~qLSEDdFEkMMDRLEKeSY~eqqdvLTlD-EAeELLk-dLgs~dVIKAVYEYWKsKRq 1524 (1579)
.+|+..|.. -...|+.+++.+|+.........+... .|-.... -..+.+...++.+||..+|.
T Consensus 532 ~~~~~~l~~---------------q~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~p~~a~~~~~~~d~~~~~~~ 596 (716)
T KOG2261|consen 532 DEDDKYLDR---------------QRAAFGASLDVFEKYHLHVSRDDKPDVLGMNNVNGSYPPSAESKELLSDNWLAKRA 596 (716)
T ss_pred CccchhhHH---------------HHHHHhhhhhcchhhccccchhcccccccCCCccccccCcccccccccccchhhhh
Confidence 334444433 356788999999985533222111110 1100000 01234678889999999999
Q ss_pred hcCCCceecccccc---hhhheeeeeeeeecccc
Q 000393 1525 KKGMPLIRHLQVTS---ELIACLICHEFIACGSV 1555 (1579)
Q Consensus 1525 KkGkPLLRrFQPpp---wk~~~li~h~~~~c~s~ 1555 (1579)
....|+++-+|-.+ .+...-..|.|-+=++-
T Consensus 597 ~~~~~~~~~~~~v~~~ds~~~~~~~~~~~~~~~~ 630 (716)
T KOG2261|consen 597 QRSSPLNSDSQTVSVKDSKPHFRKKHSFKALGTE 630 (716)
T ss_pred hcCCCccccccccccccccceecccccccccccc
Confidence 99999999999998 66677777777654443
No 8
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=97.04 E-value=0.0013 Score=54.56 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=38.5
Q ss_pred cceEEEEcCCCCceEEEEEEEeeCCCCeEEEEccC-CCceeeecC
Q 000393 486 KRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDD-RDEEWINLE 529 (1579)
Q Consensus 486 GrRVkVfWP~D~~WY~GtVtsYDp~tkkH~V~YDD-GDeE~L~Ls 529 (1579)
|..+.+.|++|..||.|+|..+++ .+.-.|.|.| |..|.+.+.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~~ 44 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPLS 44 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeHH
Confidence 678899999999999999999998 7789999987 999988754
No 9
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=97.01 E-value=0.0013 Score=57.57 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=33.5
Q ss_pred cccceEEEEcCCCCceEEEEEEEeeCCCCeEEEEccC
Q 000393 484 VLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDD 520 (1579)
Q Consensus 484 LVGrRVkVfWP~D~~WY~GtVtsYDp~tkkH~V~YDD 520 (1579)
.+|..|.|+|+.|..||.|+|+.++. .+++.|.|++
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~ 39 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLT 39 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECC
Confidence 48999999999999999999999998 6689999987
No 10
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.69 E-value=0.001 Score=79.19 Aligned_cols=61 Identities=28% Similarity=0.398 Sum_probs=46.2
Q ss_pred CccEEeeccchhhccCCCccCCCCChhHHHHHHHHhcCCccCcCCCCCCCHHHHHHHHHHHHhhhcc
Q 000393 1422 SKYFRQVETDVEMALDPSRVLYDMDSDDEQWLLKIRSSSEADDCGLSEISEEIFEKIIDIFEKAAYS 1488 (1579)
Q Consensus 1422 aSYIRfietdVEeALD~E~VEYDMDSEDEEWLeq~Nkk~krkndGs~qLSEDdFEkMMDRLEKeSY~ 1488 (1579)
..|-+|+.-+....+.- -|.||||+-|+.||.-+|+..-. .++|+|.||.+|++||++++.
T Consensus 113 ~e~~Kfi~i~p~~~~~f-~v~YdlDe~D~m~l~Ylne~~~~-----e~vS~e~fEii~t~lE~EWf~ 173 (669)
T COG5141 113 DEGKKFIDIEPPRGLFF-SVIYDLDEYDTMWLRYLNESAID-----ENVSEEAFEIIVTRLEKEWFF 173 (669)
T ss_pred hhhhhceeccCCcCccC-ceeecccchhHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHh
Confidence 45666664322222332 38999999999999999986542 479999999999999999865
No 11
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=94.03 E-value=0.1 Score=53.68 Aligned_cols=44 Identities=27% Similarity=0.394 Sum_probs=34.4
Q ss_pred cccccceEEEEcCCCCceEEEEEEEeeCCCCeEEEEccCCCceee
Q 000393 482 FWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWI 526 (1579)
Q Consensus 482 e~LVGrRVkVfWP~D~~WY~GtVtsYDp~tkkH~V~YDDGDeE~L 526 (1579)
..+||.||---|-++.-||.|+|+. +....+.+|.+|||.+-.|
T Consensus 2 ~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~~~v 45 (122)
T PF09038_consen 2 SSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYECRV 45 (122)
T ss_dssp --STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-EEEE
T ss_pred CcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCcccee
Confidence 4689999999999777779999999 4666799999999987544
No 12
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=93.58 E-value=0.025 Score=64.19 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=52.9
Q ss_pred ccCCCCCcccccceEEEEcCCCCceEEEEEEEeeC-CCCeEEEEccCCC----ceeeecC---cceEEEee
Q 000393 475 FSGDLDGFWVLKRRIKVFWPLDQCWYYGLVDDYDK-GKKLHHVKYDDRD----EEWINLE---NERFKLLL 537 (1579)
Q Consensus 475 ~~~dvDpe~LVGrRVkVfWP~D~~WY~GtVtsYDp-~tkkH~V~YDDGD----eE~L~Ls---~EKvewL~ 537 (1579)
.+..+.|+.+||++|-.-||++..||++.|+.|+. ...+|.+.||..+ .+|++|. .|+++|+.
T Consensus 151 ~~~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I~p~DIrw~g 221 (273)
T KOG4675|consen 151 SWGNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREISPEDIRWEG 221 (273)
T ss_pred ccccCCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccCCHHhccccC
Confidence 34567778899999999999999999999999555 5567888998666 7899885 69999986
No 13
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=92.41 E-value=0.25 Score=55.82 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=40.3
Q ss_pred cccccceEEEEcCCCCceEEEEEEEeeCCCCeEEEEcc-CCCceeeecCc
Q 000393 482 FWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYD-DRDEEWINLEN 530 (1579)
Q Consensus 482 e~LVGrRVkVfWP~D~~WY~GtVtsYDp~tkkH~V~YD-DGDeE~L~Ls~ 530 (1579)
.+-||-+|+..|-.|..||.++|+..+...+.-.|+|+ -|..|.+.|..
T Consensus 68 ~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~d 117 (264)
T PF06003_consen 68 KWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLSD 117 (264)
T ss_dssp ---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehhh
Confidence 56699999999999999999999999999999999996 57788888864
No 14
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=76.27 E-value=4.9 Score=36.95 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=26.6
Q ss_pred ccceEEEEcCC---CCceEEEEEEEeeCCCCeEEEEccC
Q 000393 485 LKRRIKVFWPL---DQCWYYGLVDDYDKGKKLHHVKYDD 520 (1579)
Q Consensus 485 VGrRVkVfWP~---D~~WY~GtVtsYDp~tkkH~V~YDD 520 (1579)
.|.+|.|.--. ..+||.|+|....... +..|.|+|
T Consensus 3 ~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~ 40 (68)
T PF05641_consen 3 KGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDD 40 (68)
T ss_dssp TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT
T ss_pred CCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECC
Confidence 58888888766 4599999999999876 99999964
No 15
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=73.53 E-value=7.1 Score=40.06 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=36.8
Q ss_pred cceEEEEcCCCCceEEEEEEEeeCCCCeEEEEccCCCceeeec
Q 000393 486 KRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINL 528 (1579)
Q Consensus 486 GrRVkVfWP~D~~WY~GtVtsYDp~tkkH~V~YDDGDeE~L~L 528 (1579)
|.+|-..|+.|.-||.|+|...- ..+...|.+++|+.+.+..
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~-~~~~~lV~f~~~~~~~v~~ 42 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV-SSGQFLVEFDDGDTQEVPI 42 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc-CCCEEEEEECCCCEEEeCh
Confidence 78899999999999999999998 6678999998988877653
No 16
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=73.52 E-value=7.6 Score=36.24 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=38.6
Q ss_pred cccccceEEEEcCCCCceEEEEEEEeeCCCCeEEEEc-cCCCceeeecC
Q 000393 482 FWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKY-DDRDEEWINLE 529 (1579)
Q Consensus 482 e~LVGrRVkVfWP~D~~WY~GtVtsYDp~tkkH~V~Y-DDGDeE~L~Ls 529 (1579)
...+|.-+-+.=+.|+.||.|.| ..+...+.-.|.| |-|..+.+...
T Consensus 51 ~~~~~~~~~~~~~~~~~w~Ra~I-~~~~~~~~~~V~~iD~G~~~~v~~~ 98 (121)
T PF00567_consen 51 ESNPGEGCLCVVSEDGRWYRAVI-TVDIDENQYKVFLIDYGNTEKVSAS 98 (121)
T ss_dssp T--TTEEEEEEETTTSEEEEEEE-EEEECTTEEEEEETTTTEEEEEEGG
T ss_pred ccccCCEEEEEEecCCceeeEEE-EEecccceeEEEEEecCceEEEcHH
Confidence 44578888888899999999999 6677788899999 99999997765
No 17
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=73.24 E-value=2.9 Score=53.29 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=27.6
Q ss_pred CHHHHHHHHhccCChHHHHHHHHHHHHHHhhcC-CCceec
Q 000393 1495 TSNEIEELMAGVGSMEAIKVIYEHWRQKRLKKG-MPLIRH 1533 (1579)
Q Consensus 1495 TlDEAeELLkdLgs~dVIKAVYEYWKsKRqKkG-kPLLRr 1533 (1579)
.++.+.+++. -++.++-+||+||+-||+..+ +|||.+
T Consensus 488 ~~~diae~l~--~~e~~vs~iynywklkrks~~n~~lipp 525 (893)
T KOG0954|consen 488 RNEDIAELLS--MPEFAVSAIYNYWKLKRKSRFNKELIPP 525 (893)
T ss_pred hHHHHHHHhc--CchHHHHHHHHHHHHhhhccCCCcCCCC
Confidence 3444444454 356789999999999999998 788854
No 18
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=72.76 E-value=10 Score=33.82 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=35.3
Q ss_pred ccceEEEEcCCCCceEEEEEEEeeCCCC--eEEEEccCCC---ceeeecC
Q 000393 485 LKRRIKVFWPLDQCWYYGLVDDYDKGKK--LHHVKYDDRD---EEWINLE 529 (1579)
Q Consensus 485 VGrRVkVfWP~D~~WY~GtVtsYDp~tk--kH~V~YDDGD---eE~L~Ls 529 (1579)
||.+|.+.| .+..||.++|..-....+ +..|.|..=+ .||+..+
T Consensus 3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~~ 51 (55)
T PF11717_consen 3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPES 51 (55)
T ss_dssp TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEETT
T ss_pred cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecHH
Confidence 899999999 899999999999988653 6889997554 5666543
No 19
>PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long.
Probab=67.03 E-value=3.4 Score=41.91 Aligned_cols=39 Identities=28% Similarity=0.501 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCceecccccchhhheeeeeeee
Q 000393 1510 EAIKVIYEHWRQKRLKKGMPLIRHLQVTSELIACLICHEFI 1550 (1579)
Q Consensus 1510 dVIKAVYEYWKsKRqKkGkPLLRrFQPppwk~~~li~h~~~ 1550 (1579)
...+++|+||.++|...+.|.-.-|.|. .+..+++|-|+
T Consensus 4 ~~~~~l~~yW~~~r~~~~~P~R~didP~--~i~~~Lp~i~i 42 (137)
T PF07310_consen 4 PSLRALLAYWRSLRGGRGMPSRSDIDPA--DIPRLLPHIFI 42 (137)
T ss_pred hHHHHHHHHHHHhcCCCCCCchhcCCHH--HHHHHhCCeEE
Confidence 4678999999999998888998888887 56689999988
No 20
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=63.42 E-value=8.4 Score=50.04 Aligned_cols=44 Identities=20% Similarity=0.474 Sum_probs=35.7
Q ss_pred cccceEEEEcCC----CCceEEEEEEEeeCCC--------CeEEEEccCCCceeee
Q 000393 484 VLKRRIKVFWPL----DQCWYYGLVDDYDKGK--------KLHHVKYDDRDEEWIN 527 (1579)
Q Consensus 484 LVGrRVkVfWP~----D~~WY~GtVtsYDp~t--------kkH~V~YDDGDeE~L~ 527 (1579)
-.+-+++|||.+ |.+|++|+|.+..|.+ .++.|+||.++.|.+.
T Consensus 980 ~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~e~~~~s 1035 (1113)
T KOG0644|consen 980 TCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNTETELHS 1035 (1113)
T ss_pred ccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCCcccccC
Confidence 378899999986 5789999999877653 3799999999776554
No 21
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=48.61 E-value=24 Score=43.57 Aligned_cols=46 Identities=24% Similarity=0.407 Sum_probs=36.4
Q ss_pred cccceEEEEcCCCCceEEEEEEEeeCCC------CeEEEEccCCC---ceeeecC
Q 000393 484 VLKRRIKVFWPLDQCWYYGLVDDYDKGK------KLHHVKYDDRD---EEWINLE 529 (1579)
Q Consensus 484 LVGrRVkVfWP~D~~WY~GtVtsYDp~t------kkH~V~YDDGD---eE~L~Ls 529 (1579)
-||.+|.++|..|..||.++|....... .++-|.|..=+ .|||...
T Consensus 55 ~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~~~ 109 (450)
T PLN00104 55 EVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKLE 109 (450)
T ss_pred ccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccCHh
Confidence 4999999999999999999999988732 46888996433 4676543
No 22
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.59 E-value=1.3 Score=59.37 Aligned_cols=75 Identities=16% Similarity=0.020 Sum_probs=58.1
Q ss_pred ccccccceEEeccCCC--CCcccccceEEEEcCCCCceEEE-EEEEeeCCCCeEEEEccCCCceeeecCcceEEEeeC
Q 000393 464 HSRKRRHYYEIFSGDL--DGFWVLKRRIKVFWPLDQCWYYG-LVDDYDKGKKLHHVKYDDRDEEWINLENERFKLLLL 538 (1579)
Q Consensus 464 ~sR~rk~~~EL~~~dv--Dpe~LVGrRVkVfWP~D~~WY~G-tVtsYDp~tkkH~V~YDDGDeE~L~Ls~EKvewL~s 538 (1579)
.+|++-.+.+...++. =..++||.++..|||.|..||.| .|..|+-....|.+.|++++++..++....|+.+..
T Consensus 966 ~~r~~t~~e~~~s~~~~~~~~e~V~~~~~~~la~d~~~~~~edv~~l~~~ke~~~~vl~~l~~~~~n~~~~~~~~~~~ 1043 (1266)
T KOG1525|consen 966 SRREQTKFERATSDGTLAHLPEYVGSYVIHLLAHDPDFVKAEDVDSLSDLKECLWFVLEDLDEENENNQHKFWKREKE 1043 (1266)
T ss_pred hhhhhhhhhhccCchhhhhhhHHhhhhhhhhhccCccccccchhhhHHHHHHhHHHHHhhhhhhhccchhHHHHHHHh
Confidence 3344433344444442 23788999999999999999999 777777778899999999999999998888777664
No 23
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=39.03 E-value=31 Score=46.46 Aligned_cols=45 Identities=29% Similarity=0.372 Sum_probs=33.9
Q ss_pred cccccceEEEEcCC-CCceEEEEEEEeeCCCCeEEEEccCCCceeeecCc
Q 000393 482 FWVLKRRIKVFWPL-DQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLEN 530 (1579)
Q Consensus 482 e~LVGrRVkVfWP~-D~~WY~GtVtsYDp~tkkH~V~YDDGDeE~L~Ls~ 530 (1579)
-.++|+| ++=|. |+.-+.|.+++|| ++..+|+|.||+.|.+.-+.
T Consensus 41 ~s~l~~r--~~~d~~d~~~~~~k~~s~d--~~~~rv~~e~~~~~~~~~s~ 86 (1414)
T KOG1473|consen 41 RSLLGKR--YLKDGDDKKVFLGKIVSYD--TGLYRVKYEDGDVESLEAST 86 (1414)
T ss_pred ccccccc--ccCCccchhhhhccccccc--CcceeEEeeccccccccccc
Confidence 5567766 34443 4567889999999 67899999999999876543
No 24
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=37.75 E-value=61 Score=34.26 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=32.0
Q ss_pred CCCceEEEEEEEeeCCCCeEEEEccCCCceeeecCcceEEEee
Q 000393 495 LDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLENERFKLLL 537 (1579)
Q Consensus 495 ~D~~WY~GtVtsYDp~tkkH~V~YDDGDeE~L~Ls~EKvewL~ 537 (1579)
-+..||+|++.+.+....+..|+++||. ..+.++.++.|+
T Consensus 20 ~~~~yYPa~~~~~~~~~~~~~V~Fedg~---~~i~~~dv~~LD 59 (131)
T PF08605_consen 20 YNLKYYPATCVGSGVDRDRSLVRFEDGT---YEIKNEDVKYLD 59 (131)
T ss_pred CCCeEeeEEEEeecCCCCeEEEEEecCc---eEeCcccEeeee
Confidence 3789999999999887778999999999 334555566665
No 25
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=34.53 E-value=1.1e+02 Score=32.06 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=40.0
Q ss_pred CccccccceEEecc---CCCCC--cccccceEEEEcCCCCceEEEEEEEeeC-CCCeEEEEccCCCce
Q 000393 463 GHSRKRRHYYEIFS---GDLDG--FWVLKRRIKVFWPLDQCWYYGLVDDYDK-GKKLHHVKYDDRDEE 524 (1579)
Q Consensus 463 g~sR~rk~~~EL~~---~dvDp--e~LVGrRVkVfWP~D~~WY~GtVtsYDp-~tkkH~V~YDDGDeE 524 (1579)
.-.-+++++..|+. ...++ .--.|.+|-=.||.--+||.|+|.+--. ..+...|.++|.+.+
T Consensus 47 ~~~~~~~~iIPLP~~~~~~~~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~ 114 (130)
T PF07039_consen 47 RYKLSRKQIIPLPKKAPPDTDPLAEFPKGTKVLALYPDTTCFYPATVVSPPKKKSGEYKLKFEDDEDA 114 (130)
T ss_dssp EEEEEGGGEEEE-SB--TTT-GGGS--TT-EEEEE-TTSSEEEEEEEEEE-SSTTS-EEEEECTTTST
T ss_pred eEEeCHHHEEECCCccCCCCCchhhCCCCCEEEEECCCCceEEEEEEEeCCCCCCCcEEEEEeCCCCc
Confidence 44556778888776 01111 2239999999999999999999999833 456788999765543
No 26
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=34.24 E-value=39 Score=39.04 Aligned_cols=41 Identities=7% Similarity=0.152 Sum_probs=34.0
Q ss_pred cccccceEEEEcCCCCceEEEEEEEeeCCCCeEEEEcc-CCC
Q 000393 482 FWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYD-DRD 522 (1579)
Q Consensus 482 e~LVGrRVkVfWP~D~~WY~GtVtsYDp~tkkH~V~YD-DGD 522 (1579)
..=||.+|.+-|++|..||.++|....+....--|.++ -|.
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f~s~~~ 131 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIFASYGT 131 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccCCCCceeEEEeeccc
Confidence 35599999999999999999999999997776666664 444
No 27
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=24.75 E-value=1.2e+02 Score=32.28 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCccCcCCCCCCCHHHHHHHHHHHHhhhcccCCCCCCHHHHHHHHhccCC-hHHHHHHH
Q 000393 1450 EQWLLKIRSSSEADDCGLSEISEEIFEKIIDIFEKAAYSQQRDQFTSNEIEELMAGVGS-MEAIKVIY 1516 (1579)
Q Consensus 1450 EEWLeq~Nkk~krkndGs~qLSEDdFEkMMDRLEKeSY~eqqdvLTlDEAeELLkdLgs-~dVIKAVY 1516 (1579)
++||+++.+.-+ .+++++.|.+|+-+|..-.....+-.|.+|+. .++|+ +++++++.
T Consensus 4 ~efL~~L~~~L~-------~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii---~~LG~P~~iA~~i~ 61 (181)
T PF08006_consen 4 NEFLNELEKYLK-------KLPEEEREEILEYYEEYFDDAGEEGKSEEEII---AELGSPKEIAREIL 61 (181)
T ss_pred HHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHH---HHcCCHHHHHHHHH
Confidence 578999987543 59999999999999887644333234555554 44554 45666555
No 28
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=23.69 E-value=2e+02 Score=25.18 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=31.3
Q ss_pred ccceEEEEcCCCCceEEEEEEEeeCCCCeEEEEccCCCceee
Q 000393 485 LKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWI 526 (1579)
Q Consensus 485 VGrRVkVfWP~D~~WY~GtVtsYDp~tkkH~V~YDDGDeE~L 526 (1579)
+|++|+|..+ +..|.|.+...|+. +.=.|+.+||..+.+
T Consensus 2 lG~~V~v~~~--~~~~~G~~~gId~~-G~L~v~~~~g~~~~i 40 (48)
T PF02237_consen 2 LGQEVRVETG--DGEIEGIAEGIDDD-GALLVRTEDGSIRTI 40 (48)
T ss_dssp TTSEEEEEET--SCEEEEEEEEEETT-SEEEEEETTEEEEEE
T ss_pred CCCEEEEEEC--CeEEEEEEEEECCC-CEEEEEECCCCEEEE
Confidence 6999999994 34669999999976 677888888865554
Done!