BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000395
(1576 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P6L0|FIL1L_MOUSE Filamin A-interacting protein 1-like OS=Mus musculus GN=Filip1l
PE=1 SV=2
Length = 1131
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 130/520 (25%), Positives = 223/520 (42%), Gaps = 104/520 (20%)
Query: 33 LRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSE 92
LRQ L +Q+D+++ N SL+KA +E + + KG + +E+ L+
Sbjct: 321 LRQKLAALSRQIDELEETNRSLRKAEEELQDIKDKINKG----EYGNSGIMDEVDELRKR 376
Query: 93 ISILQRKKGGSNAQSI---EEVKLLDIRVTENEREIKRLKGEVEKEKIRAESEKKNAEVE 149
+ ++ G + + I E+ + L+ R+ + + K K EV+K +R + +K +
Sbjct: 377 VLDME----GKDEELIKMEEQCRDLNKRLEKETVQSKDFKLEVDKLSVRITALEKLEDAL 432
Query: 150 KKRAAEAW--KC-VEAEKGKAEE-----ERRRANIEGKKAEEYKLQ------------LE 189
K E + KC +E EK ++ E A I+ +A E +L+ L+
Sbjct: 433 DKSKQECYSLKCNLEKEKMTTKQLSEELESLNARIKELEAIESRLEKTEITLKDDLTKLK 492
Query: 190 ALRKEAVDAKS----KLVLESSKLGDMTKKLESEKQKVS-------KEKKRANNEGKKAE 238
L VD + KL KL T +L++E+ KV+ +E KRA AE
Sbjct: 493 TLTVMLVDERKTMSEKLKQTEDKLQSTTSQLQAEQNKVTTVTEKLIEETKRALKSKTDAE 552
Query: 239 EYIIQLEALRKEAGDAKLMLVSEASKS-----------------EAVSKKLEAEK--QMV 279
E ++ ++ KE D + L +E K EA+ K K Q
Sbjct: 553 E---KMYSVTKERDDLRNKLKAEEEKGHDLLSKVTILKNRLQSLEAIEKDFVKNKLNQDS 609
Query: 280 CKERQRANIEGKKAEEYRLQLEALRREADDAKSM---LGSEASKSEALRKKLEAEK---Q 333
K + E K +E ++E L+ + D K++ L + E L ++ E+ Q
Sbjct: 610 SKSTAALHQENNKIKELSQEVENLKLKLKDMKAIEDDLMKTEDEYETLERRYANERDKAQ 669
Query: 334 MLSKEREHAHLEMAKAEDQRKLAEASR--------KQAEEEKCHAERLSQQLEEAGQRIV 385
LS+E EHA +E+AK KLAE + ++ +EE+ + LS++++ ++I
Sbjct: 670 FLSQELEHAKMELAKY----KLAEKTESSHEQWLFRRLQEEEAKSGHLSREVDALKEKIH 725
Query: 386 ELQKETNDLVSGHSVETHGCKPDTDAGFLKMKNGSKVNTLQKVGEE-PNLSLEIMKFEEA 444
E T DL+ C D L+ K + N + +G E NL+ E+ ++
Sbjct: 726 EYMA-TEDLI---------CHLQGDHSLLQKKLNQQENRNRDLGREIENLTKELERYRHF 775
Query: 445 SRRCGVDKEKSVGGKELSDLEMIKPQEHRKVVQGKCLAAD 484
S+ S+ G+ +SD PQ K VQ + AAD
Sbjct: 776 SKSL----RPSLNGRRISD-----PQVFSKEVQTE--AAD 804
>sp|O29230|RAD50_ARCFU DNA double-strand break repair Rad50 ATPase OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rad50 PE=3 SV=1
Length = 886
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 9/143 (6%)
Query: 116 IRVTENEREIKRLKGEV-EKEKIRAESEKKNAEVEKKRAAEAWKCVEAEKGKAEEERRRA 174
IR+ E E+E RLK + ++E+I+ + E+K AE+E R +E K +E+ + K EE R
Sbjct: 165 IRMLEREKE--RLKEFLSQEEQIKRQKEEKKAEIE--RISEEIKSIESLREKLSEEVRNL 220
Query: 175 NIEGKKAEEYKLQLEALRKEAVDAKSKLVLESSKLGDMTKKLESEKQKVSKEKKRANNEG 234
K+ EE+K +LE+LRK+ ++ KL ++ K+L+ +++ +K+A
Sbjct: 221 ESRLKELEEHKSRLESLRKQESSVLQEVRGLEEKLRELEKQLKEVVERIEDLEKKAKEVK 280
Query: 235 K---KAEEYIIQLEALRKEAGDA 254
+ KAE Y I LE L E A
Sbjct: 281 ELKPKAERYSI-LEKLLSEINQA 302
>sp|Q6VGS5|DAPLE_MOUSE Protein Daple OS=Mus musculus GN=Ccdc88c PE=1 SV=1
Length = 2009
Score = 34.3 bits (77), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 30/245 (12%)
Query: 160 VEAEKGKAEEERRRANIEGKKAEEYKLQLEALRKEAVDAKSKLVLESSKLGDMTKK---L 216
+E EK + + A +G++AE + +L L KE +L E + L T+K L
Sbjct: 606 LELEKQQLHRDLEEAKEKGEQAEALEKELHRLEKE----NEQLTKEVTSLKAATEKVEAL 661
Query: 217 ESEKQKVSKEKKRANNEGKKAEEYIIQLEAL---RKEAGDAKLML----------VSEAS 263
E + Q + E + + +QLE L +++ G L L ++ +
Sbjct: 662 EHQSQGLELENRSLRKSLDTLQNVSVQLEGLERDKQQLGQENLELRKMVEAMRFTSAKMA 721
Query: 264 KSEAVSKKLEAEKQMVCKERQRANIEGKKAEEYRLQLEALRREADDAKSMLGSEASKSEA 323
+ E +++LE EK+ + ++ + KK+E L +++ E + L S KS+A
Sbjct: 722 QIETENRQLEREKEELRRDVELLKTLSKKSERLELSYQSVSAENLQLQHSLESSTHKSQA 781
Query: 324 LRK---KLEAEKQMLSKEREH---AHLEMAKAEDQRKLAEASRKQAEEEK----CHAERL 373
L++ +LEAE+Q L ++ E H ++ AE+ RK E Q E++K A RL
Sbjct: 782 LQRELSQLEAERQALRRDLETLQLTHKQLEGAEEDRKALEQEVAQLEKDKKLLEKEARRL 841
Query: 374 SQQLE 378
QQ+E
Sbjct: 842 WQQVE 846
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,243,120
Number of Sequences: 539616
Number of extensions: 20683354
Number of successful extensions: 118437
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 4150
Number of HSP's that attempted gapping in prelim test: 78078
Number of HSP's gapped (non-prelim): 19840
length of query: 1576
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1445
effective length of database: 120,879,763
effective search space: 174671257535
effective search space used: 174671257535
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)