Query 000395
Match_columns 1576
No_of_seqs 284 out of 645
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 07:05:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 100.0 2E-32 4.4E-37 360.7 64.4 516 13-584 844-1435(1930)
2 PF01576 Myosin_tail_1: Myosin 99.9 3.9E-24 8.5E-29 274.2 0.0 324 217-585 3-378 (859)
3 KOG0161 Myosin class II heavy 99.5 5.5E-09 1.2E-13 141.5 62.0 123 16-138 973-1119(1930)
4 PTZ00121 MAEBL; Provisional 99.4 7.7E-08 1.7E-12 123.7 59.2 12 20-31 1094-1105(2084)
5 KOG0994 Extracellular matrix g 98.9 0.00034 7.4E-09 90.0 53.6 121 13-133 1163-1291(1758)
6 PRK02224 chromosome segregatio 98.9 0.0017 3.6E-08 85.8 63.1 10 660-669 817-826 (880)
7 PRK02224 chromosome segregatio 98.6 0.013 2.9E-07 77.6 66.8 7 696-702 780-786 (880)
8 PF01576 Myosin_tail_1: Myosin 98.6 1.2E-08 2.6E-13 132.8 0.0 245 299-577 318-567 (859)
9 PF07888 CALCOCO1: Calcium bin 98.5 0.004 8.7E-08 77.6 45.4 48 14-61 136-183 (546)
10 KOG0994 Extracellular matrix g 98.3 0.013 2.8E-07 76.4 43.8 24 370-393 1614-1637(1758)
11 KOG0996 Structural maintenance 98.3 0.05 1.1E-06 72.0 63.0 69 320-395 810-878 (1293)
12 TIGR00606 rad50 rad50. This fa 98.3 0.074 1.6E-06 73.9 66.6 31 561-591 939-969 (1311)
13 PF07888 CALCOCO1: Calcium bin 98.2 0.04 8.6E-07 69.1 43.6 58 288-349 399-457 (546)
14 KOG0976 Rho/Rac1-interacting s 98.2 0.062 1.3E-06 68.3 54.5 54 187-240 267-320 (1265)
15 PF12128 DUF3584: Protein of u 98.1 0.15 3.2E-06 70.5 68.0 22 372-393 682-703 (1201)
16 PRK03918 chromosome segregatio 98.1 0.13 2.8E-06 68.3 66.9 18 377-394 565-582 (880)
17 KOG0976 Rho/Rac1-interacting s 98.1 0.096 2.1E-06 66.7 48.0 64 263-326 368-431 (1265)
18 TIGR02169 SMC_prok_A chromosom 98.1 0.14 3.1E-06 69.4 49.3 7 37-43 193-199 (1164)
19 KOG0971 Microtubule-associated 98.0 0.062 1.3E-06 69.3 39.0 38 240-277 408-445 (1243)
20 PF12128 DUF3584: Protein of u 98.0 0.27 6E-06 67.9 61.8 9 1059-1067 1154-1162(1201)
21 PRK03918 chromosome segregatio 97.9 0.23 5E-06 66.0 69.3 7 498-504 643-649 (880)
22 KOG1029 Endocytic adaptor prot 97.9 0.08 1.7E-06 67.4 38.7 13 337-349 563-575 (1118)
23 TIGR00606 rad50 rad50. This fa 97.9 0.4 8.8E-06 66.8 61.0 8 662-669 1231-1238(1311)
24 COG1196 Smc Chromosome segrega 97.8 0.41 8.8E-06 66.1 49.9 30 25-54 671-700 (1163)
25 KOG0612 Rho-associated, coiled 97.8 0.41 8.9E-06 64.2 55.8 29 73-101 504-532 (1317)
26 KOG1029 Endocytic adaptor prot 97.8 0.023 4.9E-07 72.0 30.4 19 18-36 317-339 (1118)
27 KOG0612 Rho-associated, coiled 97.4 1.1 2.3E-05 60.6 42.3 39 311-349 792-830 (1317)
28 PF05701 WEMBL: Weak chloropla 97.4 0.73 1.6E-05 58.5 53.1 27 561-587 419-445 (522)
29 KOG4674 Uncharacterized conser 97.4 1.6 3.4E-05 61.5 62.4 58 77-134 865-923 (1822)
30 KOG0971 Microtubule-associated 97.4 1 2.2E-05 58.8 41.5 56 110-165 333-392 (1243)
31 PF09726 Macoilin: Transmembra 97.3 0.094 2E-06 68.3 29.2 35 188-222 543-577 (697)
32 PF10174 Cast: RIM-binding pro 97.2 1.6 3.5E-05 57.7 63.7 44 16-59 109-152 (775)
33 KOG4674 Uncharacterized conser 97.2 2.7 5.9E-05 59.4 63.3 48 297-344 939-986 (1822)
34 PRK04863 mukB cell division pr 97.1 3.1 6.7E-05 58.8 49.0 20 777-796 1210-1229(1486)
35 KOG0996 Structural maintenance 97.1 2.3 5E-05 57.3 64.7 21 768-788 1103-1123(1293)
36 PRK11637 AmiB activator; Provi 97.0 0.87 1.9E-05 56.3 31.2 48 189-236 176-223 (428)
37 KOG4643 Uncharacterized coiled 96.9 3.3 7.1E-05 55.2 50.8 44 197-240 408-451 (1195)
38 PF10174 Cast: RIM-binding pro 96.7 3.8 8.3E-05 54.4 57.1 37 23-59 240-276 (775)
39 KOG0977 Nuclear envelope prote 96.7 3 6.6E-05 53.0 39.1 46 13-58 27-72 (546)
40 KOG4673 Transcription factor T 96.7 3.2 7E-05 53.2 43.4 25 481-505 644-668 (961)
41 PRK11637 AmiB activator; Provi 96.7 2.5 5.4E-05 52.3 32.7 42 18-59 44-85 (428)
42 KOG4643 Uncharacterized coiled 96.7 4.4 9.5E-05 54.1 54.5 63 79-145 172-237 (1195)
43 PRK04778 septation ring format 96.5 4.3 9.3E-05 52.3 45.2 40 187-226 300-339 (569)
44 PF09726 Macoilin: Transmembra 96.4 1.1 2.3E-05 58.9 27.9 24 70-93 495-518 (697)
45 PF00038 Filament: Intermediat 96.4 3.1 6.8E-05 49.0 42.4 91 22-136 5-95 (312)
46 COG4942 Membrane-bound metallo 96.2 5.2 0.00011 49.6 31.8 45 78-126 60-104 (420)
47 KOG0977 Nuclear envelope prote 96.0 7.6 0.00016 49.7 37.2 17 81-97 60-76 (546)
48 KOG4673 Transcription factor T 95.9 8.4 0.00018 49.7 53.7 25 483-507 713-737 (961)
49 PF05667 DUF812: Protein of un 95.9 9 0.00019 49.8 32.7 44 79-126 323-366 (594)
50 COG1340 Uncharacterized archae 95.7 6.6 0.00014 46.7 35.9 89 180-275 159-247 (294)
51 PRK01156 chromosome segregatio 95.4 16 0.00035 49.4 66.5 10 116-125 256-265 (895)
52 KOG0980 Actin-binding protein 95.4 15 0.00033 48.8 32.3 84 299-392 432-518 (980)
53 PHA02562 46 endonuclease subun 95.1 14 0.0003 47.0 36.4 16 111-126 257-272 (562)
54 PRK04863 mukB cell division pr 95.1 26 0.00057 50.1 47.7 21 375-395 645-665 (1486)
55 KOG0995 Centromere-associated 95.0 16 0.00034 46.8 41.7 7 326-332 560-566 (581)
56 PLN03188 kinesin-12 family pro 95.0 24 0.00052 48.9 35.0 19 78-96 987-1005(1320)
57 PF05667 DUF812: Protein of un 94.9 18 0.00039 47.1 32.9 40 18-57 318-357 (594)
58 COG4372 Uncharacterized protei 94.8 13 0.00029 45.3 26.6 27 370-396 240-266 (499)
59 PF05701 WEMBL: Weak chloropla 94.7 18 0.00039 46.4 64.3 19 179-197 172-190 (522)
60 PF05483 SCP-1: Synaptonemal c 94.5 22 0.00047 46.3 62.2 27 477-503 590-616 (786)
61 KOG0250 DNA repair protein RAD 94.5 28 0.00062 47.5 35.6 11 12-22 176-186 (1074)
62 KOG0250 DNA repair protein RAD 94.0 35 0.00075 46.7 56.5 68 325-395 656-723 (1074)
63 KOG1103 Predicted coiled-coil 93.9 19 0.00041 43.4 25.6 21 256-276 199-219 (561)
64 KOG0980 Actin-binding protein 93.8 33 0.00072 45.9 33.2 25 483-507 793-817 (980)
65 KOG2072 Translation initiation 93.8 33 0.00071 45.7 36.0 19 116-134 670-688 (988)
66 PF15070 GOLGA2L5: Putative go 93.7 31 0.00068 45.2 50.6 31 477-507 356-386 (617)
67 PF00261 Tropomyosin: Tropomyo 93.6 17 0.00037 41.8 30.9 15 262-276 203-217 (237)
68 PF06160 EzrA: Septation ring 93.4 32 0.0007 44.5 45.2 47 81-127 165-212 (560)
69 KOG0933 Structural maintenance 93.3 42 0.00092 45.6 62.4 33 477-509 860-892 (1174)
70 PF05622 HOOK: HOOK protein; 93.2 0.025 5.3E-07 73.8 0.0 38 312-349 484-521 (713)
71 PF00038 Filament: Intermediat 93.0 24 0.00051 41.7 36.0 31 13-43 10-40 (312)
72 PRK01156 chromosome segregatio 93.0 47 0.001 45.1 63.5 10 618-627 799-808 (895)
73 COG4942 Membrane-bound metallo 92.7 34 0.00075 42.7 33.8 50 298-347 199-248 (420)
74 COG1340 Uncharacterized archae 92.6 28 0.00062 41.6 34.5 14 187-200 139-152 (294)
75 PF05622 HOOK: HOOK protein; 92.5 0.035 7.6E-07 72.4 0.0 44 14-57 246-289 (713)
76 KOG0018 Structural maintenance 92.1 62 0.0013 44.4 37.6 42 1206-1249 1018-1069(1141)
77 COG1579 Zn-ribbon protein, pos 92.1 29 0.00063 40.5 23.7 11 195-205 140-150 (239)
78 PF05557 MAD: Mitotic checkpoi 92.0 0.67 1.4E-05 61.0 10.5 27 562-588 605-631 (722)
79 PF07111 HCR: Alpha helical co 91.7 56 0.0012 43.0 51.2 44 303-346 501-544 (739)
80 COG1579 Zn-ribbon protein, pos 91.4 17 0.00037 42.3 19.6 22 79-100 61-82 (239)
81 KOG0964 Structural maintenance 91.3 71 0.0015 43.5 42.3 57 771-827 885-943 (1200)
82 PF05010 TACC: Transforming ac 91.2 32 0.0007 39.4 27.5 128 111-272 78-205 (207)
83 KOG0995 Centromere-associated 90.7 62 0.0014 41.8 46.7 20 221-240 428-447 (581)
84 PHA02562 46 endonuclease subun 90.1 65 0.0014 41.1 33.0 15 39-53 178-192 (562)
85 PRK09039 hypothetical protein; 89.8 29 0.00062 42.4 20.7 29 167-195 125-153 (343)
86 PF10168 Nup88: Nuclear pore c 89.7 9.5 0.00021 50.6 17.8 41 16-56 545-586 (717)
87 PF15066 CAGE1: Cancer-associa 89.6 68 0.0015 40.5 24.6 13 37-49 333-345 (527)
88 PF00261 Tropomyosin: Tropomyo 89.0 50 0.0011 38.1 30.9 13 86-98 3-15 (237)
89 COG0419 SbcC ATPase involved i 88.9 1.1E+02 0.0024 42.0 64.9 14 616-629 811-824 (908)
90 PF08317 Spc7: Spc7 kinetochor 87.4 76 0.0016 38.4 26.8 25 70-94 142-166 (325)
91 KOG0964 Structural maintenance 87.4 1.3E+02 0.0029 41.1 56.2 25 12-36 189-213 (1200)
92 PF00769 ERM: Ezrin/radixin/mo 86.7 38 0.00082 39.6 18.2 93 25-128 2-94 (246)
93 PRK10929 putative mechanosensi 86.5 1.6E+02 0.0036 41.4 38.0 83 1183-1281 925-1013(1109)
94 TIGR02680 conserved hypothetic 86.5 1.8E+02 0.004 41.8 35.2 245 115-378 741-990 (1353)
95 COG3883 Uncharacterized protei 85.5 87 0.0019 37.3 25.0 18 80-97 48-65 (265)
96 PF05557 MAD: Mitotic checkpoi 85.2 1.1 2.3E-05 59.1 5.5 23 370-392 512-534 (722)
97 PF10473 CENP-F_leu_zip: Leuci 85.0 62 0.0013 35.1 17.9 39 19-57 1-39 (140)
98 KOG4364 Chromatin assembly fac 84.7 35 0.00076 44.4 17.5 49 647-701 655-703 (811)
99 KOG0249 LAR-interacting protei 84.7 1.5E+02 0.0033 39.3 23.0 22 691-712 502-523 (916)
100 PF00769 ERM: Ezrin/radixin/mo 84.1 52 0.0011 38.4 17.8 14 151-164 57-70 (246)
101 TIGR03185 DNA_S_dndD DNA sulfu 83.5 1.6E+02 0.0036 38.8 37.0 11 116-126 209-219 (650)
102 PF15450 DUF4631: Domain of un 83.1 1.5E+02 0.0033 38.1 44.8 93 299-396 341-433 (531)
103 PF05483 SCP-1: Synaptonemal c 82.3 1.8E+02 0.004 38.5 61.7 18 561-578 744-761 (786)
104 PF09730 BicD: Microtubule-ass 82.2 2E+02 0.0043 38.8 40.2 34 12-45 263-296 (717)
105 KOG2129 Uncharacterized conser 80.9 69 0.0015 39.8 17.3 18 79-96 210-227 (552)
106 PF07926 TPR_MLP1_2: TPR/MLP1/ 80.7 81 0.0018 33.4 18.3 37 183-219 70-106 (132)
107 PF12718 Tropomyosin_1: Tropom 80.0 93 0.002 33.6 18.6 12 264-275 81-92 (143)
108 CHL00118 atpG ATP synthase CF0 79.8 81 0.0018 34.2 16.2 9 302-310 137-145 (156)
109 PF14662 CCDC155: Coiled-coil 78.7 1.3E+02 0.0027 34.4 24.3 48 12-59 6-53 (193)
110 PLN03188 kinesin-12 family pro 78.7 1.8E+02 0.0038 41.2 21.7 22 187-208 1226-1247(1320)
111 PRK11281 hypothetical protein; 78.1 3.2E+02 0.007 38.7 32.2 59 1211-1280 951-1015(1113)
112 KOG1899 LAR transmembrane tyro 77.4 1.7E+02 0.0038 38.3 19.8 91 17-107 107-197 (861)
113 KOG0946 ER-Golgi vesicle-tethe 77.4 2.8E+02 0.006 37.6 29.1 18 378-395 921-938 (970)
114 KOG0163 Myosin class VI heavy 76.9 2.8E+02 0.006 37.3 22.3 11 569-579 1225-1235(1259)
115 KOG0804 Cytoplasmic Zn-finger 76.6 85 0.0019 39.6 16.6 17 260-276 386-402 (493)
116 PRK00409 recombination and DNA 76.4 62 0.0014 43.7 17.0 49 125-173 518-566 (782)
117 TIGR03319 YmdA_YtgF conserved 76.3 2.5E+02 0.0054 36.5 22.3 16 572-587 442-457 (514)
118 KOG4809 Rab6 GTPase-interactin 76.1 2.5E+02 0.0054 36.5 26.6 12 37-48 340-351 (654)
119 PRK04778 septation ring format 75.5 2.6E+02 0.0057 36.5 54.4 50 479-532 481-530 (569)
120 KOG0963 Transcription factor/C 75.2 2.8E+02 0.0061 36.6 42.0 45 82-134 119-163 (629)
121 PRK09039 hypothetical protein; 74.9 2.1E+02 0.0046 35.1 21.5 44 81-128 113-156 (343)
122 PF12718 Tropomyosin_1: Tropom 74.5 1.3E+02 0.0029 32.5 19.1 23 111-133 37-59 (143)
123 PRK14472 F0F1 ATP synthase sub 74.5 1.4E+02 0.0031 32.8 16.7 9 301-309 132-140 (175)
124 TIGR01069 mutS2 MutS2 family p 74.2 74 0.0016 43.0 16.8 44 124-167 512-555 (771)
125 PRK06231 F0F1 ATP synthase sub 73.8 1.4E+02 0.0031 34.0 16.7 14 202-215 84-97 (205)
126 KOG0978 E3 ubiquitin ligase in 73.7 3.3E+02 0.0071 36.7 48.2 38 358-395 556-593 (698)
127 PRK11281 hypothetical protein; 73.6 4.1E+02 0.0089 37.7 43.0 21 563-583 428-448 (1113)
128 PF15619 Lebercilin: Ciliary p 72.6 1.8E+02 0.0039 33.1 24.9 28 210-237 74-101 (194)
129 PRK06568 F0F1 ATP synthase sub 71.6 84 0.0018 34.5 13.6 18 298-315 115-132 (154)
130 PF14915 CCDC144C: CCDC144C pr 71.3 2.4E+02 0.0053 34.2 38.4 30 477-506 224-253 (305)
131 PRK08475 F0F1 ATP synthase sub 71.2 1.1E+02 0.0024 33.7 14.6 20 200-219 56-75 (167)
132 PF08317 Spc7: Spc7 kinetochor 70.9 2.5E+02 0.0054 34.1 27.5 18 80-97 78-95 (325)
133 KOG0982 Centrosomal protein Nu 70.6 3E+02 0.0065 34.9 33.9 57 70-126 208-267 (502)
134 TIGR01005 eps_transp_fam exopo 70.1 1.2E+02 0.0026 40.6 17.5 24 36-59 195-218 (754)
135 PF06160 EzrA: Septation ring 69.8 3.5E+02 0.0076 35.4 56.9 39 477-515 475-513 (560)
136 KOG0933 Structural maintenance 69.5 4.6E+02 0.0099 36.6 63.9 23 567-589 1027-1049(1174)
137 KOG2891 Surface glycoprotein [ 69.1 2.5E+02 0.0055 33.5 19.0 17 77-93 331-347 (445)
138 PRK00409 recombination and DNA 69.0 1.1E+02 0.0024 41.5 16.7 21 11-31 148-168 (782)
139 CHL00019 atpF ATP synthase CF0 68.5 2E+02 0.0043 32.0 16.6 8 302-309 139-146 (184)
140 KOG0992 Uncharacterized conser 68.4 3.5E+02 0.0077 34.9 39.7 35 288-322 382-416 (613)
141 PRK13460 F0F1 ATP synthase sub 68.3 1.9E+02 0.0042 31.8 16.7 11 300-310 129-139 (173)
142 PRK10361 DNA recombination pro 68.2 3.6E+02 0.0077 34.8 21.3 29 113-141 71-99 (475)
143 PRK13453 F0F1 ATP synthase sub 67.8 2E+02 0.0043 31.8 16.7 11 300-310 131-141 (173)
144 PRK07353 F0F1 ATP synthase sub 67.6 1.7E+02 0.0036 30.8 16.3 27 198-224 37-63 (140)
145 PRK14475 F0F1 ATP synthase sub 67.2 2E+02 0.0043 31.6 16.3 13 299-311 122-134 (167)
146 PF04849 HAP1_N: HAP1 N-termin 67.2 68 0.0015 38.8 12.7 66 317-395 161-226 (306)
147 PRK14471 F0F1 ATP synthase sub 67.1 1.9E+02 0.0042 31.4 16.6 11 300-310 121-131 (164)
148 TIGR03007 pepcterm_ChnLen poly 65.6 3.7E+02 0.008 34.1 21.8 18 80-97 164-181 (498)
149 KOG0018 Structural maintenance 65.4 5.5E+02 0.012 36.0 50.7 53 768-826 975-1029(1141)
150 PF15619 Lebercilin: Ciliary p 65.0 2.5E+02 0.0055 32.0 22.8 28 30-57 14-41 (194)
151 KOG1003 Actin filament-coating 64.7 2.6E+02 0.0057 32.1 23.8 41 312-352 112-152 (205)
152 PF06008 Laminin_I: Laminin Do 64.7 2.9E+02 0.0062 32.4 29.6 49 113-161 49-97 (264)
153 PRK07352 F0F1 ATP synthase sub 64.6 2.3E+02 0.0049 31.3 16.3 10 300-309 132-141 (174)
154 PRK14473 F0F1 ATP synthase sub 63.9 2.2E+02 0.0048 30.9 16.7 9 301-309 122-130 (164)
155 TIGR01069 mutS2 MutS2 family p 63.9 1.3E+02 0.0028 40.8 15.9 27 10-36 142-168 (771)
156 PF15070 GOLGA2L5: Putative go 63.8 4.8E+02 0.01 34.8 36.2 22 112-133 83-104 (617)
157 PRK00106 hypothetical protein; 63.1 4.6E+02 0.01 34.3 24.1 9 578-586 469-477 (535)
158 KOG2072 Translation initiation 62.3 5.6E+02 0.012 35.1 42.4 14 263-276 772-785 (988)
159 PRK09174 F0F1 ATP synthase sub 61.9 2.9E+02 0.0063 31.6 17.5 9 201-209 88-96 (204)
160 PF10168 Nup88: Nuclear pore c 61.7 5.6E+02 0.012 34.8 21.9 33 15-47 537-570 (717)
161 PF10186 Atg14: UV radiation r 61.1 3.2E+02 0.0069 31.8 17.6 9 118-126 72-80 (302)
162 smart00787 Spc7 Spc7 kinetocho 61.0 3.8E+02 0.0083 32.7 20.2 24 109-132 204-227 (312)
163 PF04156 IncA: IncA protein; 60.7 2.7E+02 0.0058 30.8 15.7 21 31-51 84-104 (191)
164 PF11559 ADIP: Afadin- and alp 60.3 2.4E+02 0.0053 30.2 16.9 41 15-55 39-79 (151)
165 PF04849 HAP1_N: HAP1 N-termin 58.8 4.2E+02 0.0091 32.4 19.7 25 109-133 227-251 (306)
166 PRK13461 F0F1 ATP synthase sub 58.3 2.7E+02 0.0059 30.1 16.7 10 300-309 118-127 (159)
167 PF14662 CCDC155: Coiled-coil 58.1 3.4E+02 0.0073 31.1 24.5 23 113-135 40-62 (193)
168 TIGR03185 DNA_S_dndD DNA sulfu 57.5 5.9E+02 0.013 33.8 41.3 18 318-335 482-499 (650)
169 PRK13454 F0F1 ATP synthase sub 56.2 2.7E+02 0.0059 31.1 14.4 14 201-214 66-79 (181)
170 PF10481 CENP-F_N: Cenp-F N-te 56.1 1.8E+02 0.0039 34.8 13.1 110 290-403 17-130 (307)
171 KOG4403 Cell surface glycoprot 55.9 3.9E+02 0.0083 33.9 16.3 20 186-205 309-328 (575)
172 COG2433 Uncharacterized conser 55.8 2E+02 0.0044 37.7 14.6 27 117-143 475-501 (652)
173 KOG0244 Kinesin-like protein [ 55.6 7.4E+02 0.016 34.4 23.8 34 563-596 819-852 (913)
174 PF07926 TPR_MLP1_2: TPR/MLP1/ 55.6 2.8E+02 0.0061 29.4 19.5 16 373-388 103-118 (132)
175 PRK09173 F0F1 ATP synthase sub 55.1 3.1E+02 0.0066 29.7 16.3 13 299-311 114-126 (159)
176 PF08614 ATG16: Autophagy prot 55.1 98 0.0021 34.7 10.8 13 82-94 128-140 (194)
177 KOG4809 Rab6 GTPase-interactin 54.4 6.3E+02 0.014 33.1 38.7 23 111-133 326-348 (654)
178 PRK14474 F0F1 ATP synthase sub 54.3 4.3E+02 0.0093 31.2 18.4 12 299-310 117-128 (250)
179 KOG0804 Cytoplasmic Zn-finger 54.0 3E+02 0.0065 35.1 15.2 11 26-36 330-340 (493)
180 PF04111 APG6: Autophagy prote 53.7 1.2E+02 0.0026 36.7 11.9 26 16-41 11-36 (314)
181 smart00787 Spc7 Spc7 kinetocho 53.7 5E+02 0.011 31.7 26.5 22 15-36 71-92 (312)
182 PF12325 TMF_TATA_bd: TATA ele 53.2 3.1E+02 0.0067 29.2 16.2 95 17-133 19-113 (120)
183 KOG1853 LIS1-interacting prote 52.2 4.8E+02 0.01 31.1 20.3 12 189-200 118-129 (333)
184 COG4372 Uncharacterized protei 52.1 5.8E+02 0.013 32.1 34.5 18 223-240 264-281 (499)
185 KOG4360 Uncharacterized coiled 50.9 6.9E+02 0.015 32.6 18.4 24 109-132 226-249 (596)
186 KOG2412 Nuclear-export-signal 50.5 7.2E+02 0.016 32.6 19.6 11 574-584 479-489 (591)
187 PF05911 DUF869: Plant protein 50.0 8.6E+02 0.019 33.4 25.5 36 481-516 617-652 (769)
188 PRK10929 putative mechanosensi 49.7 1E+03 0.022 34.1 43.5 21 563-583 404-424 (1109)
189 KOG1003 Actin filament-coating 49.2 4.7E+02 0.01 30.2 24.6 34 203-236 115-148 (205)
190 PRK10361 DNA recombination pro 48.6 7.3E+02 0.016 32.2 24.5 14 298-311 147-160 (475)
191 KOG0946 ER-Golgi vesicle-tethe 48.3 9.1E+02 0.02 33.2 31.3 16 79-94 701-716 (970)
192 TIGR03321 alt_F1F0_F0_B altern 48.1 5.1E+02 0.011 30.2 19.2 16 398-413 206-221 (246)
193 PF15066 CAGE1: Cancer-associa 47.6 7.4E+02 0.016 32.0 28.1 16 111-126 392-407 (527)
194 PF10146 zf-C4H2: Zinc finger- 47.1 3.4E+02 0.0073 31.8 13.7 29 15-43 2-30 (230)
195 TIGR03017 EpsF chain length de 46.5 6.8E+02 0.015 31.2 22.1 25 35-59 171-195 (444)
196 PF03962 Mnd1: Mnd1 family; I 46.1 2.1E+02 0.0046 32.3 11.6 48 81-133 80-127 (188)
197 TIGR03007 pepcterm_ChnLen poly 45.9 7.4E+02 0.016 31.5 22.5 21 113-133 251-271 (498)
198 PF13851 GAS: Growth-arrest sp 45.7 5.1E+02 0.011 29.6 18.9 20 82-101 98-117 (201)
199 PF13851 GAS: Growth-arrest sp 45.4 5.2E+02 0.011 29.6 21.8 22 110-131 56-77 (201)
200 PRK14474 F0F1 ATP synthase sub 45.0 5E+02 0.011 30.6 14.8 17 198-214 37-53 (250)
201 COG2433 Uncharacterized conser 44.3 1.9E+02 0.0042 37.9 12.0 38 20-57 421-458 (652)
202 PF03148 Tektin: Tektin family 43.9 7.5E+02 0.016 30.9 32.4 55 299-353 234-288 (384)
203 COG4026 Uncharacterized protei 43.4 2.1E+02 0.0046 33.3 10.9 24 35-58 135-158 (290)
204 TIGR01144 ATP_synt_b ATP synth 42.6 4.4E+02 0.0096 28.0 16.6 17 201-217 30-46 (147)
205 KOG0978 E3 ubiquitin ligase in 42.4 1E+03 0.023 32.2 45.4 43 16-58 229-274 (698)
206 PF03962 Mnd1: Mnd1 family; I 42.2 2.6E+02 0.0057 31.6 11.6 25 35-59 69-93 (188)
207 PF05917 DUF874: Helicobacter 41.6 1.6E+02 0.0034 35.3 9.8 20 12-31 14-33 (398)
208 PRK12472 hypothetical protein; 41.4 5.5E+02 0.012 33.3 15.0 9 268-276 274-282 (508)
209 KOG1103 Predicted coiled-coil 41.1 7.9E+02 0.017 30.5 23.2 8 167-174 123-130 (561)
210 PTZ00266 NIMA-related protein 41.1 3.8E+02 0.0083 37.7 14.8 7 598-604 758-764 (1021)
211 PF15254 CCDC14: Coiled-coil d 40.7 6.4E+02 0.014 34.3 15.8 125 3-130 416-543 (861)
212 PF06008 Laminin_I: Laminin Do 40.5 6.7E+02 0.014 29.4 32.2 60 37-96 47-106 (264)
213 PF12325 TMF_TATA_bd: TATA ele 40.3 4.8E+02 0.01 27.8 14.3 51 198-248 24-74 (120)
214 KOG1853 LIS1-interacting prote 40.1 7.2E+02 0.016 29.7 21.7 25 18-42 17-41 (333)
215 PF09755 DUF2046: Uncharacteri 39.2 8.2E+02 0.018 30.1 38.6 26 111-136 108-133 (310)
216 PF05010 TACC: Transforming ac 39.1 6.7E+02 0.015 29.1 28.8 18 299-316 151-168 (207)
217 PF05335 DUF745: Protein of un 38.3 6.6E+02 0.014 28.7 17.8 112 115-226 66-177 (188)
218 PRK12472 hypothetical protein; 38.3 7.9E+02 0.017 31.9 15.6 49 271-319 229-279 (508)
219 PRK10884 SH3 domain-containing 38.2 3.1E+02 0.0067 31.6 11.4 6 22-27 94-99 (206)
220 PF10481 CENP-F_N: Cenp-F N-te 37.9 8.1E+02 0.018 29.7 19.2 19 118-136 41-59 (307)
221 KOG0288 WD40 repeat protein Ti 37.8 9.7E+02 0.021 30.6 16.2 16 81-96 52-67 (459)
222 PRK09510 tolA cell envelope in 37.5 9.6E+02 0.021 30.4 29.6 9 155-163 62-70 (387)
223 KOG1899 LAR transmembrane tyro 37.3 1.2E+03 0.025 31.3 19.2 18 79-96 176-193 (861)
224 PF12777 MT: Microtubule-bindi 37.2 3.2E+02 0.0069 33.4 12.2 34 242-275 15-48 (344)
225 PF07106 TBPIP: Tat binding pr 37.0 4.7E+02 0.01 28.7 12.3 61 26-98 77-137 (169)
226 KOG0982 Centrosomal protein Nu 36.9 1E+03 0.022 30.5 29.5 24 26-49 213-236 (502)
227 PF13514 AAA_27: AAA domain 36.9 1.5E+03 0.032 32.3 67.0 30 7-36 143-172 (1111)
228 PRK09174 F0F1 ATP synthase sub 36.2 7.2E+02 0.016 28.6 14.1 18 323-340 153-170 (204)
229 TIGR03752 conj_TIGR03752 integ 36.1 3E+02 0.0065 35.4 11.7 37 21-57 59-95 (472)
230 TIGR03321 alt_F1F0_F0_B altern 35.6 7.7E+02 0.017 28.8 14.8 27 195-221 34-60 (246)
231 PF06818 Fez1: Fez1; InterPro 35.3 7.7E+02 0.017 28.6 16.8 39 116-154 131-169 (202)
232 PF10212 TTKRSYEDQ: Predicted 35.3 1.1E+03 0.023 31.0 16.3 97 29-139 414-510 (518)
233 PRK13455 F0F1 ATP synthase sub 34.1 7E+02 0.015 27.8 18.6 12 300-311 140-151 (184)
234 KOG0962 DNA repair protein RAD 33.0 1.8E+03 0.039 32.2 61.1 22 565-586 1100-1121(1294)
235 PRK10884 SH3 domain-containing 32.4 4.5E+02 0.0098 30.3 11.6 16 81-96 97-112 (206)
236 PF07111 HCR: Alpha helical co 31.7 1.5E+03 0.032 30.9 64.4 19 329-347 477-495 (739)
237 PF10267 Tmemb_cc2: Predicted 31.7 6.5E+02 0.014 31.9 13.6 80 18-100 209-292 (395)
238 PF08614 ATG16: Autophagy prot 31.2 2.5E+02 0.0054 31.5 9.3 32 16-47 76-107 (194)
239 PF09787 Golgin_A5: Golgin sub 30.5 1.3E+03 0.029 29.9 34.0 13 86-98 157-169 (511)
240 PTZ00491 major vault protein; 30.5 1.2E+03 0.027 32.2 16.4 130 176-308 664-795 (850)
241 KOG1890 Phosphoinositide phosp 30.1 36 0.00078 43.8 2.7 97 1417-1518 390-495 (949)
242 PF12777 MT: Microtubule-bindi 29.9 8.3E+02 0.018 30.0 14.1 23 372-394 79-101 (344)
243 KOG4593 Mitotic checkpoint pro 29.6 1.6E+03 0.034 30.5 49.1 59 77-135 144-205 (716)
244 PF05266 DUF724: Protein of un 28.7 9.2E+02 0.02 27.5 14.1 21 79-99 126-146 (190)
245 PF11180 DUF2968: Protein of u 28.5 8.1E+02 0.018 28.2 12.3 31 366-396 152-182 (192)
246 KOG0992 Uncharacterized conser 28.4 1.5E+03 0.032 29.8 45.9 41 11-51 43-90 (613)
247 PF09730 BicD: Microtubule-ass 28.4 1.7E+03 0.037 30.5 42.5 45 81-133 101-145 (717)
248 TIGR01005 eps_transp_fam exopo 28.2 1.6E+03 0.035 30.2 27.9 24 77-100 194-217 (754)
249 PTZ00266 NIMA-related protein 28.2 8.1E+02 0.018 34.7 14.7 9 922-930 778-786 (1021)
250 PF10267 Tmemb_cc2: Predicted 27.4 7.7E+02 0.017 31.2 13.2 24 372-395 248-271 (395)
251 KOG1265 Phospholipase C [Lipid 27.4 1.9E+03 0.041 30.8 22.6 162 2-173 996-1182(1189)
252 PF09789 DUF2353: Uncharacteri 27.2 1.3E+03 0.027 28.6 21.1 38 15-52 10-47 (319)
253 PF11932 DUF3450: Protein of u 26.9 7.7E+02 0.017 28.8 12.6 80 299-395 25-104 (251)
254 KOG4460 Nuclear pore complex, 26.5 1.6E+03 0.035 29.7 15.5 13 264-276 713-725 (741)
255 KOG0249 LAR-interacting protei 26.3 1.8E+03 0.039 30.2 27.6 17 187-203 171-187 (916)
256 PF09738 DUF2051: Double stran 26.3 7.4E+02 0.016 30.3 12.5 45 15-59 78-122 (302)
257 PF07889 DUF1664: Protein of u 25.9 8.6E+02 0.019 26.2 11.5 20 30-49 38-57 (126)
258 PF09403 FadA: Adhesion protei 25.4 7.4E+02 0.016 26.7 10.9 18 40-57 25-42 (126)
259 COG3883 Uncharacterized protei 25.1 1.3E+03 0.028 27.9 29.2 16 81-96 84-99 (265)
260 PF02403 Seryl_tRNA_N: Seryl-t 24.8 3.6E+02 0.0077 27.3 8.3 64 325-395 38-101 (108)
261 PLN03086 PRLI-interacting fact 24.5 3.4E+02 0.0074 35.7 9.8 14 900-913 177-190 (567)
262 KOG0963 Transcription factor/C 24.4 1.8E+03 0.04 29.6 45.1 24 370-393 319-342 (629)
263 COG4487 Uncharacterized protei 24.0 1.6E+03 0.036 28.8 27.5 83 298-381 136-218 (438)
264 COG4499 Predicted membrane pro 23.9 2E+02 0.0044 35.9 7.2 16 140-155 396-411 (434)
265 KOG1144 Translation initiation 22.8 9.7E+02 0.021 32.9 13.1 9 649-657 664-672 (1064)
266 KOG4001 Axonemal dynein light 22.8 7.8E+02 0.017 28.6 10.9 54 77-133 199-252 (259)
267 PRK09343 prefoldin subunit bet 22.4 9.3E+02 0.02 25.4 13.4 11 116-126 99-109 (121)
268 PF05320 Pox_RNA_Pol_19: Poxvi 22.3 39 0.00085 37.0 0.9 18 1255-1273 86-103 (167)
269 PF14282 FlxA: FlxA-like prote 22.0 3.7E+02 0.008 27.7 7.8 51 79-129 21-71 (106)
270 TIGR02338 gimC_beta prefoldin, 21.9 8.8E+02 0.019 24.9 12.3 28 14-41 3-30 (110)
271 PRK13454 F0F1 ATP synthase sub 21.7 1.2E+03 0.025 26.2 14.0 10 326-335 134-143 (181)
272 PF11570 E2R135: Coiled-coil r 21.2 1.1E+03 0.024 25.8 12.1 10 243-252 78-87 (136)
273 PF15358 TSKS: Testis-specific 21.0 5.6E+02 0.012 32.4 10.0 88 31-136 128-215 (558)
274 PF13863 DUF4200: Domain of un 20.7 9.4E+02 0.02 24.8 15.2 33 65-97 62-94 (126)
275 TIGR03545 conserved hypothetic 20.5 7.6E+02 0.016 32.6 11.8 48 296-343 196-243 (555)
276 PF05266 DUF724: Protein of un 20.0 1.3E+03 0.029 26.3 12.9 52 76-131 130-181 (190)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=2e-32 Score=360.69 Aligned_cols=516 Identities=24% Similarity=0.289 Sum_probs=384.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 000395 13 NPCCRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSE 92 (1576)
Q Consensus 13 n~c~~qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~kalEEErlree~Er~krEeEsk~K~ELEkeIsELKkq 92 (1576)
.+.+..+++++.+.+..++++++. ..++..+...|...++.++..............+.+.++|.++.++..+
T Consensus 844 ~~e~~~l~~~l~~~e~~~~ele~~-------~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~ 916 (1930)
T KOG0161|consen 844 EEEIQKLKEELQKSESKRKELEEK-------LVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKER 916 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666555 3333334444444444444333334445555566677777777777777
Q ss_pred HHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 93 ISILQRKKGGSNAQSIEEVKLLDIRVTENEREIKRL---KGEVEKEKIRAESEKKNAEVEKKRAAEAWKCVEAEKGKAEE 169 (1576)
Q Consensus 93 LEelEq~~~kle~Ek~~E~K~LQEeI~eLEeEieeL---kqKLEkEKk~aeeekkkaEEekkkaEE~~kkLe~EK~k~EE 169 (1576)
++.++.+...++ .+.+.+++++..+.+++.++ .++++.|+..++...++++++....+|...++.++++..|+
T Consensus 917 ~e~~ee~~~~le----~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe 992 (1930)
T KOG0161|consen 917 LEEEEEKNAELE----RKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEE 992 (1930)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765444333 22444445555555555533 45666777777777777777776677776666666655543
Q ss_pred HHHHHHHHh-------------h-----HHHHHHH---HHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 000395 170 ERRRANIEG-------------K-----KAEEYKL---QLEALRKEAVDAKSKLVLESSKLGDMTKKLESEKQKVSKEKK 228 (1576)
Q Consensus 170 EK~ka~eel-------------K-----KveELek---qiEkaRqElEkaKRKLEgELk~AqEA~kklEeEKqkaeeekK 228 (1576)
.-+.-...+ + .+.+++. +.++.+.++++.+|+++++++.+++....+..+++++..+++
T Consensus 993 ~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~ 1072 (1930)
T KOG0161|consen 993 RIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLK 1072 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 222222222 1 2223322 566889999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHH-HHHHHHHhhhH---------------
Q 000395 229 RANNEGKKAEEY----IIQLEALRKEAGDAKLMLVSEASKSEAVSKKLEAEKQ-MVCKERQRANI--------------- 288 (1576)
Q Consensus 229 kAE~E~keAEe~----k~qaeqLrkEaeQKKlr~eEeQa~ieELleeLEaERq-~AkaEKqRaD~--------------- 288 (1576)
+++.++..+..+ ...+.++ ++.++ +++++|.+|.++++++|. ++++++++.|.
T Consensus 1073 kke~El~~l~~k~e~e~~~~~~l-----~k~i~--eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~ 1145 (1930)
T KOG0161|consen 1073 KKESELSQLQSKLEDEQAEVAQL-----QKQIK--ELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQG 1145 (1930)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH-----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999997666 6666666 55555 999999999999999999 59999999992
Q ss_pred -------HhHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 289 -------EGKKAEEY----------------RLQLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLE 345 (1576)
Q Consensus 289 -------EL~KarEa----------------e~tLeeLRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~aE 345 (1576)
+++++++. +.+++.+|++|+++++++.++++++++.+++++++|..+..+.+++..+
T Consensus 1146 ~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~e 1225 (1930)
T KOG0161|consen 1146 GTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAE 1225 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233222 4699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCcchhhhhh-hccccccc
Q 000395 346 MAKAEDQRKLAEASRKQAEEEKCHAERLSQQLEEAGQRIVELQKETNDLVSGHSVETHGCKPDTDAGFLKM-KNGSKVNT 424 (1576)
Q Consensus 346 ~akaqearklAe~akkKA~eEK~~adQLe~QL~Eak~KleElerq~~EL~s~k~klq~E~~~e~~~~lEe~-k~~skL~k 424 (1576)
+..+... +++.++ .++.++.++.+++.+++++.+++.++..+++++++|. .+..+.++++ ...+.+.+
T Consensus 1226 v~~~~~~---------k~~~e~-~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~-~~l~~~lee~e~~~~~~~r 1294 (1930)
T KOG0161|consen 1226 LEQLSSE---------KKDLEK-KDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNEN-EELSRQLEEAEAKLSALSR 1294 (1930)
T ss_pred HHHHhhh---------hccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHhhHhHHHHHHHHHHHH
Confidence 9977444 566666 5689999999999999999999999999999999993 4445556666 56665555
Q ss_pred ccccccCcchhHHhhhHHHHHhHhcccccccccccccchhhhcchHHHHhHH---HhHhHHHHHHHHHHHHHHhhHHHHH
Q 000395 425 LQKVGEEPNLSLEIMKFEEASRRCGVDKEKSVGGKELSDLEMIKPQEHRKVV---QGKCLAADHLSQQLEEARGRIDELQ 501 (1576)
Q Consensus 425 ~rs~~~Q~~Lsk~k~qlEelarqL~~EKeK~~~E~q~~d~Ee~k~eek~kLa---r~~e~d~d~LrEQLEEE~EaK~eLe 501 (1576)
.++.+++ +++++.+++ .+++++ +.+|+ ++.++|++.|++++||+.+.+.++.
T Consensus 1295 ~~~~~~~--------qle~~k~ql---------------e~e~r~--k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~ 1349 (1930)
T KOG0161|consen 1295 DKQALES--------QLEELKRQL---------------EEETRE--KSALENALRQLEHELDLLREQLEEEQEAKNELE 1349 (1930)
T ss_pred HHHHHHH--------HHHHHHHHH---------------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444444 444454444 778877 66777 9999999999999999999999999
Q ss_pred HHHHHHhh----hhhhhccccchhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHhhhHhHhhHhHHHHhHHHHh
Q 000395 502 KQIHDLHS----SRKSFDASAIQVDKYVDSGKAKLLKKQLKFEK-MQVKHAKQVAKLEKDRNIILHQELGRLKVDFAQFL 576 (1576)
Q Consensus 502 RQLskl~s----~RkK~Ete~i~~~EeLEEAKKKL~K~kle~ek-~e~k~akk~~kLEKaK~RlLQqELEDL~vDl~~~~ 576 (1576)
|+++++++ ||++|++..+++.+++|++|++++.+....+. .+...+ ++++||++|++ ||+|++|+.+|+++..
T Consensus 1350 r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~-~~~~Lek~k~~-l~~el~d~~~d~~~~~ 1427 (1930)
T KOG0161|consen 1350 RKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANA-KNASLEKAKNR-LQQELEDLQLDLERSR 1427 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 99999877 99999999999999999999999996666664 344443 59999999999 9999999999998885
Q ss_pred hhhhhhhh
Q 000395 577 HRLDTVDQ 584 (1576)
Q Consensus 577 ~~~~~ld~ 584 (1576)
.....|+.
T Consensus 1428 ~~~~~le~ 1435 (1930)
T KOG0161|consen 1428 AAVAALEK 1435 (1930)
T ss_pred HHHHHHHH
Confidence 55444443
No 2
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.88 E-value=3.9e-24 Score=274.19 Aligned_cols=324 Identities=23% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHH-HHHHHHHhhh----
Q 000395 217 ESEKQKVSKEKKRANNEGKKAEEY----IIQLEALRKEAGDAKLMLVSEASKSEAVSKKLEAEKQ-MVCKERQRAN---- 287 (1576)
Q Consensus 217 EeEKqkaeeekKkAE~E~keAEe~----k~qaeqLrkEaeQKKlr~eEeQa~ieELleeLEaERq-~AkaEKqRaD---- 287 (1576)
+..+..+...+++++.++..+..+ +..+..+ +++++ +++++|++|.++|+++|. ++++++.|+|
T Consensus 3 ~~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l-----~k~~k--elq~~i~el~eeLe~Er~~R~kaek~r~dL~~E 75 (859)
T PF01576_consen 3 ERQKEELEEQLKKKEEELSQLNSKLEDEQALRAQL-----QKKIK--ELQARIEELEEELESERQARAKAEKQRRDLSEE 75 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888775444 6777777 77777 999999999999999999 6999999999
Q ss_pred ------------------HHhHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000395 288 ------------------IEGKKAEEY----------------RLQLEALRREADDAKSMLGSEASKSEALRKKLEAEKQ 333 (1576)
Q Consensus 288 ------------------~EL~KarEa----------------e~tLeeLRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~ 333 (1576)
+++++++++ +.+++.||++|++++.++.++++++++++.++|++|.
T Consensus 76 Le~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~ 155 (859)
T PF01576_consen 76 LEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKS 155 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455444 3589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCCcchhh
Q 000395 334 MLSKEREHAHLEMAKAEDQRKLAEASRKQAEEEKCHAERLSQQLEEAGQRIVELQKETNDLVSGHSVETHGCKPDTDAGF 413 (1576)
Q Consensus 334 klk~Er~dl~aE~akaqearklAe~akkKA~eEK~~adQLe~QL~Eak~KleElerq~~EL~s~k~klq~E~~~e~~~~l 413 (1576)
.+..+.+++.++++.++.+ +++.++ .+++++.++.+++.++++..+.++++...++++++++ .+....+
T Consensus 156 ~l~~e~~dL~~~l~~~~k~---------k~~~Ek-~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~-~eL~~qL 224 (859)
T PF01576_consen 156 QLEAELDDLQAQLDSLQKA---------KQEAEK-KRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSEN-SELTRQL 224 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHH---------HHHHHh-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999999988555 666666 5789999999999999999999999999999999994 5566667
Q ss_pred hhh-hcccccccccccccCcchhHHhhhHHHHHhHhcccccccccccccchhhhcchHHHHhHH---HhHhHHHHHHHHH
Q 000395 414 LKM-KNGSKVNTLQKVGEEPNLSLEIMKFEEASRRCGVDKEKSVGGKELSDLEMIKPQEHRKVV---QGKCLAADHLSQQ 489 (1576)
Q Consensus 414 Ee~-k~~skL~k~rs~~~Q~~Lsk~k~qlEelarqL~~EKeK~~~E~q~~d~Ee~k~eek~kLa---r~~e~d~d~LrEQ 489 (1576)
++. .+++.+.+.++.+.+ +++++.+++ .++++. +.+|. ++.++|++.|+++
T Consensus 225 ee~e~~~~~l~r~k~~L~~--------qLeelk~~l---------------eeEtr~--k~~L~~~l~~le~e~~~L~eq 279 (859)
T PF01576_consen 225 EEAESQLSQLQREKSSLES--------QLEELKRQL---------------EEETRA--KQALEKQLRQLEHELEQLREQ 279 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHhhHHHH---------------HhHhhh--hhhhHHHHHHHHHHHHHHHHH
Confidence 666 666666665544444 455555555 777776 66666 8899999999999
Q ss_pred HHHHHhhHHHHHHHHHHHhh----hhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhHhHhh
Q 000395 490 LEEARGRIDELQKQIHDLHS----SRKSFDASAIQVDKYVDSGKAKLLKKQLKFEKMQVKHAK-QVAKLEKDRNIILHQE 564 (1576)
Q Consensus 490 LEEE~EaK~eLeRQLskl~s----~RkK~Ete~i~~~EeLEEAKKKL~K~kle~ek~e~k~ak-k~~kLEKaK~RlLQqE 564 (1576)
++++.+++.++++++++++. ||++|+++++.+.+++|++|+|+.++...... +...+. ++.+|+|+|++ |++|
T Consensus 280 leeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e-~le~~~~~~~~LeK~k~r-L~~E 357 (859)
T PF01576_consen 280 LEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQE-QLEEANAKVSSLEKTKKR-LQGE 357 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999887 99999999999999999999999995555443 322223 69999999999 9999
Q ss_pred HhHHHHhHHHHhhhhhhhhhh
Q 000395 565 LGRLKVDFAQFLHRLDTVDQC 585 (1576)
Q Consensus 565 LEDL~vDl~~~~~~~~~ld~~ 585 (1576)
++|+++++++...+...|++-
T Consensus 358 leDl~~eLe~~~~~~~~LeKK 378 (859)
T PF01576_consen 358 LEDLTSELEKAQAAAAELEKK 378 (859)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888765
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.52 E-value=5.5e-09 Score=141.46 Aligned_cols=123 Identities=22% Similarity=0.271 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhHHHHHHhHHHhHHHHH
Q 000395 16 CRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQ---------------EEKACAEVEKKGREEVSAAKV 80 (1576)
Q Consensus 16 ~~qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~kalE---------------EErlree~Er~krEeEsk~K~ 80 (1576)
+..+.+.+.|+.+.++.++++...+.+.++..+.+...+.+... +.+.+.+.|+..+..+.+.+.
T Consensus 973 ~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~ 1052 (1930)
T KOG0161|consen 973 INSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKD 1052 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777655555555544422 112222333222222222200
Q ss_pred ------HHHHHHHHHHHHHHHHHHhh--cCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 81 ------SLENEISALKSEISILQRKK--GGSNAQS-IEEVKLLDIRVTENEREIKRLKGEVEKEKIR 138 (1576)
Q Consensus 81 ------ELEkeIsELKkqLEelEq~~--~kle~Ek-~~E~K~LQEeI~eLEeEieeLkqKLEkEKk~ 138 (1576)
.+..++.+|..++...+..+ ...+.++ ..++..++..|.+++.+|.++.+.++.|+..
T Consensus 1053 ~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~ 1119 (1930)
T KOG0161|consen 1053 LQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERAS 1119 (1930)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222222111111 1122233 4557788888999999999999999888753
No 4
>PTZ00121 MAEBL; Provisional
Probab=99.44 E-value=7.7e-08 Score=123.69 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 000395 20 EDKYKKSQGNRT 31 (1576)
Q Consensus 20 KeKleKLEe~RK 31 (1576)
.+.+.++|+.|+
T Consensus 1094 ~~~~~~~e~~r~ 1105 (2084)
T PTZ00121 1094 EEAFGKAEEAKK 1105 (2084)
T ss_pred HHHhhhHHHhhh
Confidence 333444444333
No 5
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.91 E-value=0.00034 Score=89.98 Aligned_cols=121 Identities=15% Similarity=0.200 Sum_probs=68.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh---HHHHHHhHHHhHHHHHHHHHHHH
Q 000395 13 NPCCRVWEDKYKKSQGNRTALRQALKLFEQQLD--KIQAENLSLKKACQEEKAC---AEVEKKGREEVSAAKVSLENEIS 87 (1576)
Q Consensus 13 n~c~~qLKeKleKLEe~RKeLEE~vklLEEKld--qLQaE~~~L~kalEEErlr---ee~Er~krEeEsk~K~ELEkeIs 87 (1576)
-+||..|..-+.++...-..+..+.+.|++-=. ...++...+++.+++-+.- .-......++....-..|.+++.
T Consensus 1163 h~CF~~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~ 1242 (1758)
T KOG0994|consen 1163 HECFQTWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQ 1242 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 368999999999888888888877666654321 3334444444444433211 00011222333555667788888
Q ss_pred HHHHHHHHHHHhhcCCCccc---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 88 ALKSEISILQRKKGGSNAQS---IEEVKLLDIRVTENEREIKRLKGEVE 133 (1576)
Q Consensus 88 ELKkqLEelEq~~~kle~Ek---~~E~K~LQEeI~eLEeEieeLkqKLE 133 (1576)
++...|..+|.++......- ..+..-||.....+..-..+|+++++
T Consensus 1243 ~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~ 1291 (1758)
T KOG0994|consen 1243 ALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLE 1291 (1758)
T ss_pred HHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877776665332222 23344555555555555555555554
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=98.88 E-value=0.0017 Score=85.85 Aligned_cols=10 Identities=30% Similarity=0.198 Sum_probs=5.3
Q ss_pred ccccccccCC
Q 000395 660 CSESMSGIDS 669 (1576)
Q Consensus 660 ~~~~isg~~s 669 (1576)
.-+|.+|+|.
T Consensus 817 lDEp~~~lD~ 826 (880)
T PRK02224 817 LDEPTVFLDS 826 (880)
T ss_pred ecCCcccCCH
Confidence 3455555555
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=98.56 E-value=0.013 Score=77.56 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=3.5
Q ss_pred ccccccc
Q 000395 696 ASFSDRQ 702 (1576)
Q Consensus 696 ~s~sd~~ 702 (1576)
.++|.|+
T Consensus 780 ~~lS~G~ 786 (880)
T PRK02224 780 EQLSGGE 786 (880)
T ss_pred hhcCccH
Confidence 4455554
No 8
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.56 E-value=1.2e-08 Score=132.76 Aligned_cols=245 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 299 QLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEMAKAEDQRKLAEASRKQAEEEKCHAERLSQQLE 378 (1576)
Q Consensus 299 tLeeLRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~aE~akaqearklAe~akkKA~eEK~~adQLe~QL~ 378 (1576)
.+++.|++....+.++.++++........+++.+.++..|..++...+..+... ....+| +.+.+..+++
T Consensus 318 elEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~---------~~~LeK-Kqr~fDk~l~ 387 (859)
T PF01576_consen 318 ELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAA---------AAELEK-KQRKFDKQLA 387 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH-HHHhHHHHHH
Confidence 678889999999999999999999999999999999999999888888765332 223333 3355667777
Q ss_pred HHHHHHHHHHHHHhhhhccccccccCCCCCcchhhhhh-hcccccccccccccCcchhHHhhhHHHHHhHhccccccccc
Q 000395 379 EAGQRIVELQKETNDLVSGHSVETHGCKPDTDAGFLKM-KNGSKVNTLQKVGEEPNLSLEIMKFEEASRRCGVDKEKSVG 457 (1576)
Q Consensus 379 Eak~KleElerq~~EL~s~k~klq~E~~~e~~~~lEe~-k~~skL~k~rs~~~Q~~Lsk~k~qlEelarqL~~EKeK~~~ 457 (1576)
+.+.+++++....+.+......+.++. ......+++. -....+.+.+..+.. ++.++..+++. .
T Consensus 388 e~k~~~~~~~~e~d~~q~e~r~~~te~-~~Lk~~lee~~e~~e~lere~k~L~~--------El~dl~~q~~~------~ 452 (859)
T PF01576_consen 388 EWKAKVEELQAERDAAQREARELETEL-FKLKNELEELQEQLEELERENKQLQD--------ELEDLTSQLDD------A 452 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHH--------hhccchhhhhh------h
Confidence 777777666655555543333333331 1111112222 222223332222211 22222222200 0
Q ss_pred ccccchhhhcchHHHHhHHHhHhHHHHHHHHHHHHHHhhHHHHHHHHHHH----hhhhhhhccccchhhhhhhHHHHHHH
Q 000395 458 GKELSDLEMIKPQEHRKVVQGKCLAADHLSQQLEEARGRIDELQKQIHDL----HSSRKSFDASAIQVDKYVDSGKAKLL 533 (1576)
Q Consensus 458 E~q~~d~Ee~k~eek~kLar~~e~d~d~LrEQLEEE~EaK~eLeRQLskl----~s~RkK~Ete~i~~~EeLEEAKKKL~ 533 (1576)
.....+++.. + +.++.+.+.++.+++|-..+....+-....+ +++|..++-.-..+.+++|+.++.++
T Consensus 453 ~k~v~eLek~----k----r~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~q 524 (859)
T PF01576_consen 453 GKSVHELEKA----K----RRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQ 524 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchHHHHHH----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhH
Confidence 0000011101 1 4455556667777777776665555444443 44777777655567778888888887
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhHhHhhHhHHHHhHHHHhh
Q 000395 534 KKQLKFEKMQVKHAKQVAKLEKDRNIILHQELGRLKVDFAQFLH 577 (1576)
Q Consensus 534 K~kle~ek~e~k~akk~~kLEKaK~RlLQqELEDL~vDl~~~~~ 577 (1576)
+.....+..-....+....+-+.|++ |..++.+|.+-|+....
T Consensus 525 r~l~~le~~LE~E~k~r~~~~r~kkK-LE~~l~eLe~~ld~~n~ 567 (859)
T PF01576_consen 525 RQLESLEAELEEERKERAEALREKKK-LESDLNELEIQLDHANR 567 (859)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhH
Confidence 74443332111111223444566777 66777777766655543
No 9
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.51 E-value=0.004 Score=77.61 Aligned_cols=48 Identities=13% Similarity=0.288 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 14 PCCRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQEE 61 (1576)
Q Consensus 14 ~c~~qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~kalEEE 61 (1576)
|-...+..++++.++.+.+|......|+++..+++.++..+...+...
T Consensus 136 ~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~ 183 (546)
T PF07888_consen 136 TKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQE 183 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456778888888888888888888888888888888887776643
No 10
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.32 E-value=0.013 Score=76.41 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 000395 370 AERLSQQLEEAGQRIVELQKETND 393 (1576)
Q Consensus 370 adQLe~QL~Eak~KleElerq~~E 393 (1576)
+....+|+.++..++++++.++..
T Consensus 1614 ~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1614 ATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666655544
No 11
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=0.05 Score=72.00 Aligned_cols=69 Identities=23% Similarity=0.197 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000395 320 KSEALRKKLEAEKQMLSKEREHAHLEMAKAEDQRKLAEASRKQAEEEKCHAERLSQQLEEAGQRIVELQKETNDLV 395 (1576)
Q Consensus 320 qlqeiKkKLEkEK~klk~Er~dl~aE~akaqearklAe~akkKA~eEK~~adQLe~QL~Eak~KleElerq~~EL~ 395 (1576)
.+.+.-..++..+.++..+.+++..+.+.++.+.+..+..-.+.... ..++.+.+.++++++++++++.
T Consensus 810 ~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d-------~~~l~~~~~~ie~l~kE~e~~q 878 (1293)
T KOG0996|consen 810 KLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVD-------KKRLKELEEQIEELKKEVEELQ 878 (1293)
T ss_pred HHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444455555555554444433333321111111 1234455555666666666543
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.29 E-value=0.074 Score=73.86 Aligned_cols=31 Identities=3% Similarity=0.183 Sum_probs=25.7
Q ss_pred hHhhHhHHHHhHHHHhhhhhhhhhhccCCCc
Q 000395 561 LHQELGRLKVDFAQFLHRLDTVDQCFSSNTE 591 (1576)
Q Consensus 561 LQqELEDL~vDl~~~~~~~~~ld~~~s~~~~ 591 (1576)
++.++..+.-++.++......++.|...+.+
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~ 969 (1311)
T TIGR00606 939 AQDKVNDIKEKVKNIHGYMKDIENKIQDGKD 969 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 6778888888889999999999999976633
No 13
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.19 E-value=0.04 Score=69.14 Aligned_cols=58 Identities=28% Similarity=0.306 Sum_probs=27.2
Q ss_pred HHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 288 IEGKKAEEY-RLQLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEMAKA 349 (1576)
Q Consensus 288 ~EL~KarEa-e~tLeeLRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~aE~aka 349 (1576)
.++.+.++. +.++++.+++..+ +...+.-++.-|.++-.+++.+......+...+..+
T Consensus 399 ~ql~ke~D~n~vqlsE~~rel~E----lks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 399 KQLGKEKDCNRVQLSENRRELQE----LKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444 3467766666654 223333333334444444444444444444444443
No 14
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.17 E-value=0.062 Score=68.33 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000395 187 QLEALRKEAVDAKSKLVLESSKLGDMTKKLESEKQKVSKEKKRANNEGKKAEEY 240 (1576)
Q Consensus 187 qiEkaRqElEkaKRKLEgELk~AqEA~kklEeEKqkaeeekKkAE~E~keAEe~ 240 (1576)
.++..-.+.+.....|+.|+....+-++.++++...+.+...+++....++-++
T Consensus 267 ~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatky 320 (1265)
T KOG0976|consen 267 EIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKY 320 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 334444445556666778888888888888888777777777777666665544
No 15
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.11 E-value=0.15 Score=70.45 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 000395 372 RLSQQLEEAGQRIVELQKETND 393 (1576)
Q Consensus 372 QLe~QL~Eak~KleElerq~~E 393 (1576)
+...++..+...+..+..+...
T Consensus 682 ~~~~~l~~l~~~l~~~~~e~~~ 703 (1201)
T PF12128_consen 682 QIEEQLNELEEELKQLKQELEE 703 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=98.07 E-value=0.13 Score=68.31 Aligned_cols=18 Identities=39% Similarity=0.601 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 000395 377 LEEAGQRIVELQKETNDL 394 (1576)
Q Consensus 377 L~Eak~KleElerq~~EL 394 (1576)
+.+....+++++.++.+|
T Consensus 565 ~~~~~~~~~~~~~~l~~L 582 (880)
T PRK03918 565 LDELEEELAELLKELEEL 582 (880)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 333333444444444443
No 17
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.07 E-value=0.096 Score=66.71 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000395 263 SKSEAVSKKLEAEKQMVCKERQRANIEGKKAEEYRLQLEALRREADDAKSMLGSEASKSEALRK 326 (1576)
Q Consensus 263 a~ieELleeLEaERq~AkaEKqRaD~EL~KarEae~tLeeLRKKh~dS~~EL~EQLeqlqeiKk 326 (1576)
..|.+..+..+.+.+......+..+.+.-..+..-.-++..++-|..++++|.+.++.+...+.
T Consensus 368 r~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgt 431 (1265)
T KOG0976|consen 368 RSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGT 431 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhH
Confidence 3445555555555554333322222221111111234555667777777777777766655543
No 18
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.07 E-value=0.14 Score=69.37 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 000395 37 LKLFEQQ 43 (1576)
Q Consensus 37 vklLEEK 43 (1576)
+..|+.+
T Consensus 193 ~~~L~~q 199 (1164)
T TIGR02169 193 IDEKRQQ 199 (1164)
T ss_pred HHHHHHH
Confidence 3333333
No 19
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.96 E-value=0.062 Score=69.26 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHH
Q 000395 240 YIIQLEALRKEAGDAKLMLVSEASKSEAVSKKLEAEKQ 277 (1576)
Q Consensus 240 ~k~qaeqLrkEaeQKKlr~eEeQa~ieELleeLEaERq 277 (1576)
.+.++++|+...+..+.+.+....+|++|.++++++.-
T Consensus 408 k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlG 445 (1243)
T KOG0971|consen 408 KNSELEELRRQKERLSRELDQAESTIADLKEQVDAALG 445 (1243)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444444444444667788999999988765
No 20
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.95 E-value=0.27 Score=67.87 Aligned_cols=9 Identities=44% Similarity=0.770 Sum_probs=5.8
Q ss_pred CCCCCCCCC
Q 000395 1059 SELGPAHDN 1067 (1576)
Q Consensus 1059 ~~~g~~h~~ 1067 (1576)
+|+|-+|.+
T Consensus 1154 DEiG~L~~~ 1162 (1201)
T PF12128_consen 1154 DEIGKLHPN 1162 (1201)
T ss_pred hhhccCChH
Confidence 567766654
No 21
>PRK03918 chromosome segregation protein; Provisional
Probab=97.92 E-value=0.23 Score=66.01 Aligned_cols=7 Identities=43% Similarity=0.928 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 000395 498 DELQKQI 504 (1576)
Q Consensus 498 ~eLeRQL 504 (1576)
.++..++
T Consensus 643 ~~l~~~~ 649 (880)
T PRK03918 643 EELRKEL 649 (880)
T ss_pred HHHHHHH
Confidence 3333333
No 22
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.08 Score=67.35 Aligned_cols=13 Identities=8% Similarity=0.066 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 000395 337 KEREHAHLEMAKA 349 (1576)
Q Consensus 337 ~Er~dl~aE~aka 349 (1576)
.+.+-...+++++
T Consensus 563 ~eidi~n~qlkel 575 (1118)
T KOG1029|consen 563 NEIDIFNNQLKEL 575 (1118)
T ss_pred HhhhhHHHHHHHH
Confidence 3444444444444
No 23
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.86 E-value=0.4 Score=66.85 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=3.2
Q ss_pred ccccccCC
Q 000395 662 ESMSGIDS 669 (1576)
Q Consensus 662 ~~isg~~s 669 (1576)
+|.+|+|.
T Consensus 1231 EPt~~lD~ 1238 (1311)
T TIGR00606 1231 EPTTNLDR 1238 (1311)
T ss_pred CCcccCCH
Confidence 34444443
No 24
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.83 E-value=0.41 Score=66.07 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 25 KSQGNRTALRQALKLFEQQLDKIQAENLSL 54 (1576)
Q Consensus 25 KLEe~RKeLEE~vklLEEKldqLQaE~~~L 54 (1576)
.++.....++.....+......+..+...+
T Consensus 671 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1163)
T COG1196 671 ELEEELAELEAQLEKLEEELKSLKNELRSL 700 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333333333333333
No 25
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.77 E-value=0.41 Score=64.19 Aligned_cols=29 Identities=31% Similarity=0.336 Sum_probs=19.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000395 73 EEVSAAKVSLENEISALKSEISILQRKKG 101 (1576)
Q Consensus 73 EeEsk~K~ELEkeIsELKkqLEelEq~~~ 101 (1576)
.++.+.+++++.++.+++.+++..+....
T Consensus 504 ~~~~~~~~~l~~~~~~~~eele~~q~~~~ 532 (1317)
T KOG0612|consen 504 SEEEAKKRKLEALVRQLEEELEDAQKKND 532 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888877777654443
No 26
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.023 Score=71.98 Aligned_cols=19 Identities=26% Similarity=0.449 Sum_probs=9.0
Q ss_pred HHHHHHHH----HHHHHHHHHHH
Q 000395 18 VWEDKYKK----SQGNRTALRQA 36 (1576)
Q Consensus 18 qLKeKleK----LEe~RKeLEE~ 36 (1576)
+-++.|.| ||+.|+.|++.
T Consensus 317 KrkeNy~kGqaELerRRq~leeq 339 (1118)
T KOG1029|consen 317 KRKENYEKGQAELERRRQALEEQ 339 (1118)
T ss_pred hhHHhHhhhhHHHHHHHHHHHHH
Confidence 33555555 44444444443
No 27
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.45 E-value=1.1 Score=60.55 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=18.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 311 KSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEMAKA 349 (1576)
Q Consensus 311 ~~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~aE~aka 349 (1576)
..++...++.+..+|+++|.+..++....-.+..++..+
T Consensus 792 Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~~~~~~~~k~l 830 (1317)
T KOG0612|consen 792 EKQLKKLLDELAELKKQLEEENAQLRGLNRSAWGQMKEL 830 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHH
Confidence 344444455555556666655555544333333333333
No 28
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.44 E-value=0.73 Score=58.53 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=20.2
Q ss_pred hHhhHhHHHHhHHHHhhhhhhhhhhcc
Q 000395 561 LHQELGRLKVDFAQFLHRLDTVDQCFS 587 (1576)
Q Consensus 561 LQqELEDL~vDl~~~~~~~~~ld~~~s 587 (1576)
.+.|++-.+-.-...+..+.+|..+-+
T Consensus 419 a~ke~eaaKasEa~Ala~ik~l~e~~~ 445 (522)
T PF05701_consen 419 ALKEAEAAKASEALALAEIKALSESES 445 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 346777788777888888888877663
No 29
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.40 E-value=1.6 Score=61.52 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 77 AAKVSLENEISALKSEISILQRKKGGSNAQS-IEEVKLLDIRVTENEREIKRLKGEVEK 134 (1576)
Q Consensus 77 k~K~ELEkeIsELKkqLEelEq~~~kle~Ek-~~E~K~LQEeI~eLEeEieeLkqKLEk 134 (1576)
....+|+.++.+|++++...+.+...+.... ..+.-.+.+.++....++..++.+|..
T Consensus 865 ~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~ 923 (1822)
T KOG4674|consen 865 TNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTD 923 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344677778888888777766555555321 233334444455555555544444443
No 30
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.38 E-value=1 Score=58.79 Aligned_cols=56 Identities=27% Similarity=0.297 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 110 EVKLLDIRVTENEREIKRLKGEVEKEK----IRAESEKKNAEVEKKRAAEAWKCVEAEKG 165 (1576)
Q Consensus 110 E~K~LQEeI~eLEeEieeLkqKLEkEK----k~aeeekkkaEEekkkaEE~~kkLe~EK~ 165 (1576)
|+..+++++.+++-+++=|+...+..- ...--+.+..|.+..+..|+-=++++..+
T Consensus 333 eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA 392 (1243)
T KOG0971|consen 333 EVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSA 392 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 344555556666555554444433221 01122556667777777777777776553
No 31
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.33 E-value=0.094 Score=68.26 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHH
Q 000395 188 LEALRKEAVDAKSKLVLESSKLGDMTKKLESEKQK 222 (1576)
Q Consensus 188 iEkaRqElEkaKRKLEgELk~AqEA~kklEeEKqk 222 (1576)
...-++++|..-++|..|++..+|+...++.+.+.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~ 577 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQE 577 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666655543
No 32
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.22 E-value=1.6 Score=57.72 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 16 CRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQ 59 (1576)
Q Consensus 16 ~~qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~kalE 59 (1576)
+......+..+...+..+...+..+...+.+++..+..++..++
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~ 152 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLD 152 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555556666665555555555554443
No 33
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.17 E-value=2.7 Score=59.38 Aligned_cols=48 Identities=25% Similarity=0.258 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 297 RLQLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHL 344 (1576)
Q Consensus 297 e~tLeeLRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~a 344 (1576)
+..+..+..++.+.+.++...++....-.-.+|.+...+..+..++..
T Consensus 939 eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~ 986 (1822)
T KOG4674|consen 939 EQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLRE 986 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777666666665555555555555555544443
No 34
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.10 E-value=3.1 Score=58.84 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=9.1
Q ss_pred HHhhhhcCccccchhhhHHH
Q 000395 777 VESIELLHSEDRKLHLQIEE 796 (1576)
Q Consensus 777 ~~~~~~l~s~~~~l~~~~~~ 796 (1576)
++.++-|..+-.++...|.+
T Consensus 1210 ~et~e~Le~ei~rl~~~L~e 1229 (1486)
T PRK04863 1210 VEAIEQMEIELSRLTEELTS 1229 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 35
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.10 E-value=2.3 Score=57.32 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=9.4
Q ss_pred hhhhhHHHhHHhhhhcCcccc
Q 000395 768 RKRKRLLHTVESIELLHSEDR 788 (1576)
Q Consensus 768 ~kr~r~~~~~~~~~~l~s~~~ 788 (1576)
+|+.-....|...+....+.+
T Consensus 1103 ~k~~~y~~rv~~l~~~t~kr~ 1123 (1293)
T KOG0996|consen 1103 KKVELYLKRVAELEKFTQKRD 1123 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444544444444333
No 36
>PRK11637 AmiB activator; Provisional
Probab=96.95 E-value=0.87 Score=56.30 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000395 189 EALRKEAVDAKSKLVLESSKLGDMTKKLESEKQKVSKEKKRANNEGKK 236 (1576)
Q Consensus 189 EkaRqElEkaKRKLEgELk~AqEA~kklEeEKqkaeeekKkAE~E~ke 236 (1576)
...+.+++..+..++.++...+.....++.++..++..++.+...+..
T Consensus 176 ~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~ 223 (428)
T PRK11637 176 KQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTG 223 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444443333333
No 37
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.86 E-value=3.3 Score=55.17 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=30.1
Q ss_pred HHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000395 197 DAKSKLVLESSKLGDMTKKLESEKQKVSKEKKRANNEGKKAEEY 240 (1576)
Q Consensus 197 kaKRKLEgELk~AqEA~kklEeEKqkaeeekKkAE~E~keAEe~ 240 (1576)
+..++|..+....++....+-..+.+++...|+.-.|..++...
T Consensus 408 ke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e 451 (1195)
T KOG4643|consen 408 KEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEE 451 (1195)
T ss_pred HHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777777777777777777777777777777665554
No 38
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.74 E-value=3.8 Score=54.38 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 23 YKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQ 59 (1576)
Q Consensus 23 leKLEe~RKeLEE~vklLEEKldqLQaE~~~L~kalE 59 (1576)
+..+|+....++..+..|.....-..+..+.+.+.++
T Consensus 240 i~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le 276 (775)
T PF10174_consen 240 IASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLE 276 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 3334444444444444444333322233344433433
No 39
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.73 E-value=3 Score=53.04 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 13 NPCCRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKAC 58 (1576)
Q Consensus 13 n~c~~qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~kal 58 (1576)
..|...+++.-.+..++...|-.+....-++.-.|++++..|...+
T Consensus 27 ~~~as~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di 72 (546)
T KOG0977|consen 27 SNAASPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDI 72 (546)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677787777766666555555554444444445555555554443
No 40
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.72 E-value=3.2 Score=53.16 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Q 000395 481 LAADHLSQQLEEARGRIDELQKQIH 505 (1576)
Q Consensus 481 ~d~d~LrEQLEEE~EaK~eLeRQLs 505 (1576)
++.+.|++.+.....+++.++|++.
T Consensus 644 RQIE~lQ~tl~~~~tawereE~~l~ 668 (961)
T KOG4673|consen 644 RQIEALQETLSKAATAWEREERSLN 668 (961)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3344455555555555555555553
No 41
>PRK11637 AmiB activator; Provisional
Probab=96.72 E-value=2.5 Score=52.33 Aligned_cols=42 Identities=19% Similarity=0.118 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 18 VWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQ 59 (1576)
Q Consensus 18 qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~kalE 59 (1576)
.+++++..+++.++.++..+..++.++.+++.+...+...+.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~ 85 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAIS 85 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555544444433
No 42
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.67 E-value=4.4 Score=54.06 Aligned_cols=63 Identities=27% Similarity=0.422 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 000395 79 KVSLENEISALKSEISILQRKKGGSNAQSIEEVKLLDIRVTENEREIKRLKGEVE---KEKIRAESEKKN 145 (1576)
Q Consensus 79 K~ELEkeIsELKkqLEelEq~~~kle~Ek~~E~K~LQEeI~eLEeEieeLkqKLE---kEKk~aeeekkk 145 (1576)
...|+-++.++++.+..+++.+. +|..-...+..++..+++++..+++..+ .++.+++.-..+
T Consensus 172 ~~hL~velAdle~kir~LrqElE----EK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrde 237 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELE----EKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDE 237 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 33566677777777776665443 2222355566667777777776644433 344444443333
No 43
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.54 E-value=4.3 Score=52.28 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHHH
Q 000395 187 QLEALRKEAVDAKSKLVLESSKLGDMTKKLESEKQKVSKE 226 (1576)
Q Consensus 187 qiEkaRqElEkaKRKLEgELk~AqEA~kklEeEKqkaeee 226 (1576)
.+..++..+++...++...+..+++....+..+...+...
T Consensus 300 kE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 300 REVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456777777777777777777777777777776666555
No 44
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.44 E-value=1.1 Score=58.93 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=12.9
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHH
Q 000395 70 KGREEVSAAKVSLENEISALKSEI 93 (1576)
Q Consensus 70 ~krEeEsk~K~ELEkeIsELKkqL 93 (1576)
.+...|.+.|..+|+++.+.++.-
T Consensus 495 krL~eE~~~R~~lEkQL~eErk~r 518 (697)
T PF09726_consen 495 KRLAEERRQRASLEKQLQEERKAR 518 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666665443
No 45
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.38 E-value=3.1 Score=48.97 Aligned_cols=91 Identities=22% Similarity=0.338 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000395 22 KYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISILQRKKG 101 (1576)
Q Consensus 22 KleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~kalEEErlree~Er~krEeEsk~K~ELEkeIsELKkqLEelEq~~~ 101 (1576)
.+..|....-.+-++|..|++++..|+.++..+.... ...-...+...+.++.+++..+++.-
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~-------------~~~~~~~~~~ye~el~~lr~~id~~~---- 67 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKK-------------GEEVSRIKEMYEEELRELRRQIDDLS---- 67 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHCHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcc-------------cccCcccccchhhHHHHhHHhhhhHH----
Confidence 3444444555566666666666666665554443331 11112334556666777776666543
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 102 GSNAQSIEEVKLLDIRVTENEREIKRLKGEVEKEK 136 (1576)
Q Consensus 102 kle~Ek~~E~K~LQEeI~eLEeEieeLkqKLEkEK 136 (1576)
.++..++-++..+..++..++.+++.+.
T Consensus 68 -------~eka~l~~e~~~l~~e~~~~r~k~e~e~ 95 (312)
T PF00038_consen 68 -------KEKARLELEIDNLKEELEDLRRKYEEEL 95 (312)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 2233455556666666666666666553
No 46
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.18 E-value=5.2 Score=49.56 Aligned_cols=45 Identities=18% Similarity=0.371 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHH
Q 000395 78 AKVSLENEISALKSEISILQRKKGGSNAQSIEEVKLLDIRVTENEREIK 126 (1576)
Q Consensus 78 ~K~ELEkeIsELKkqLEelEq~~~kle~Ek~~E~K~LQEeI~eLEeEie 126 (1576)
...+|++++.+++.++..++..+.... .+.+.+..+|..++..+.
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~----~~l~~~~~~I~~~~~~l~ 104 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETA----DDLKKLRKQIADLNARLN 104 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHhhHHHHHHHHH
Confidence 345666666666666666543332111 223444455555555555
No 47
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.98 E-value=7.6 Score=49.66 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000395 81 SLENEISALKSEISILQ 97 (1576)
Q Consensus 81 ELEkeIsELKkqLEelE 97 (1576)
-||.+...|..++..++
T Consensus 60 ~LEaqN~~L~~di~~lr 76 (546)
T KOG0977|consen 60 FLEAQNRKLEHDINLLR 76 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555544443
No 48
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.91 E-value=8.4 Score=49.66 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 000395 483 ADHLSQQLEEARGRIDELQKQIHDL 507 (1576)
Q Consensus 483 ~d~LrEQLEEE~EaK~eLeRQLskl 507 (1576)
...|+.++++++.+-.+..++...+
T Consensus 713 ~~~l~~~le~e~nr~~~~~~e~~~~ 737 (961)
T KOG4673|consen 713 QGQLSKSLEKERNRAAENRQEYLAA 737 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4467777777776666666555443
No 49
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.89 E-value=9 Score=49.77 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHH
Q 000395 79 KVSLENEISALKSEISILQRKKGGSNAQSIEEVKLLDIRVTENEREIK 126 (1576)
Q Consensus 79 K~ELEkeIsELKkqLEelEq~~~kle~Ek~~E~K~LQEeI~eLEeEie 126 (1576)
..+-++++.+|+.+++++...+..+. .+++.+...+..+..++.
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~----~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELE----AEIKMLKSSLKQLEEELE 366 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 33445556666666665554443322 334444444444444444
No 50
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.69 E-value=6.6 Score=46.71 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000395 180 KAEEYKLQLEALRKEAVDAKSKLVLESSKLGDMTKKLESEKQKVSKEKKRANNEGKKAEEYIIQLEALRKEAGDAKLMLV 259 (1576)
Q Consensus 180 KveELekqiEkaRqElEkaKRKLEgELk~AqEA~kklEeEKqkaeeekKkAE~E~keAEe~k~qaeqLrkEaeQKKlr~e 259 (1576)
++.++..++...+.++..-..++..=...+++-...+-.-.+++++-.+.++.--.+.......+..+..+..
T Consensus 159 ~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~------- 231 (294)
T COG1340 159 KLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFR------- 231 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------
Confidence 4444445555555555444444433333333333333333334444444444333334444444444433333
Q ss_pred HHhhHHHHHHHHHHHH
Q 000395 260 SEASKSEAVSKKLEAE 275 (1576)
Q Consensus 260 EeQa~ieELleeLEaE 275 (1576)
..+..+.++...+.+-
T Consensus 232 ~~~~elre~~k~ik~l 247 (294)
T COG1340 232 NLQNELRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455554444433
No 51
>PRK01156 chromosome segregation protein; Provisional
Probab=95.40 E-value=16 Score=49.36 Aligned_cols=10 Identities=10% Similarity=0.345 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 000395 116 IRVTENEREI 125 (1576)
Q Consensus 116 EeI~eLEeEi 125 (1576)
.++.+++..+
T Consensus 256 ~~i~ele~~l 265 (895)
T PRK01156 256 SEIKTAESDL 265 (895)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 52
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.37 E-value=15 Score=48.82 Aligned_cols=84 Identities=24% Similarity=0.290 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 299 QLEALRREADDAKSMLGSEASKSEALRKKLEAEKQ---MLSKEREHAHLEMAKAEDQRKLAEASRKQAEEEKCHAERLSQ 375 (1576)
Q Consensus 299 tLeeLRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~---klk~Er~dl~aE~akaqearklAe~akkKA~eEK~~adQLe~ 375 (1576)
..+.|+.+|++- |.+...+.++++-+.. ++.++..+++-.+.+++++...++. |.+......+.++.
T Consensus 432 k~t~l~~~h~~l-------L~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~---K~e~~~~~le~l~~ 501 (980)
T KOG0980|consen 432 KYTELRQEHADL-------LRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAET---KTESQAKALESLRQ 501 (980)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHH
Confidence 444555555544 4444455555443322 2233333444455555444322221 33333333445555
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000395 376 QLEEAGQRIVELQKETN 392 (1576)
Q Consensus 376 QL~Eak~KleElerq~~ 392 (1576)
++.....+++++++.+.
T Consensus 502 El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 502 ELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 55555555555555533
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.14 E-value=14 Score=47.03 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 000395 111 VKLLDIRVTENEREIK 126 (1576)
Q Consensus 111 ~K~LQEeI~eLEeEie 126 (1576)
.+.++..+..++..+.
T Consensus 257 L~~l~~~~~~~~~~l~ 272 (562)
T PHA02562 257 LNKLNTAAAKIKSKIE 272 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 54
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.10 E-value=26 Score=50.09 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 000395 375 QQLEEAGQRIVELQKETNDLV 395 (1576)
Q Consensus 375 ~QL~Eak~KleElerq~~EL~ 395 (1576)
.+...++.+++.++.++..+.
T Consensus 645 ~~~~~~~~~~~~L~~~i~~l~ 665 (1486)
T PRK04863 645 VERDELAARKQALDEEIERLS 665 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 333455555555666665554
No 55
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.97 E-value=16 Score=46.80 Aligned_cols=7 Identities=43% Similarity=0.378 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 000395 326 KKLEAEK 332 (1576)
Q Consensus 326 kKLEkEK 332 (1576)
.+||.-+
T Consensus 560 s~le~~k 566 (581)
T KOG0995|consen 560 SSLENLK 566 (581)
T ss_pred HHHHHHH
Confidence 3333333
No 56
>PLN03188 kinesin-12 family protein; Provisional
Probab=94.96 E-value=24 Score=48.91 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000395 78 AKVSLENEISALKSEISIL 96 (1576)
Q Consensus 78 ~K~ELEkeIsELKkqLEel 96 (1576)
.|.-|..+|.+|+.+|.-.
T Consensus 987 ErEvll~eI~dlr~qL~~~ 1005 (1320)
T PLN03188 987 EREVLLEEIQDLRSQLQYY 1005 (1320)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 4445667788888776544
No 57
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.91 E-value=18 Score=47.15 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 18 VWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKA 57 (1576)
Q Consensus 18 qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~ka 57 (1576)
........-++...++++.++.+..++..+..+...+...
T Consensus 318 ~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~ 357 (594)
T PF05667_consen 318 TEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSS 357 (594)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555556666655555555554444
No 58
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.84 E-value=13 Score=45.34 Aligned_cols=27 Identities=19% Similarity=0.291 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000395 370 AERLSQQLEEAGQRIVELQKETNDLVS 396 (1576)
Q Consensus 370 adQLe~QL~Eak~KleElerq~~EL~s 396 (1576)
+++...++.--...+.+-+++++.+..
T Consensus 240 i~q~~q~iaar~e~I~~re~~lq~lEt 266 (499)
T COG4372 240 ISQKAQQIAARAEQIRERERQLQRLET 266 (499)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445555555555555555666655543
No 59
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.74 E-value=18 Score=46.38 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 000395 179 KKAEEYKLQLEALRKEAVD 197 (1576)
Q Consensus 179 KKveELekqiEkaRqElEk 197 (1576)
++++++..++..++..++.
T Consensus 172 ~kve~L~~Ei~~lke~l~~ 190 (522)
T PF05701_consen 172 EKVEELSKEIIALKESLES 190 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555555554443
No 60
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.50 E-value=22 Score=46.33 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=16.9
Q ss_pred HhHhHHHHHHHHHHHHHHhhHHHHHHH
Q 000395 477 QGKCLAADHLSQQLEEARGRIDELQKQ 503 (1576)
Q Consensus 477 r~~e~d~d~LrEQLEEE~EaK~eLeRQ 503 (1576)
...+..|+.|+.|.|.......+++..
T Consensus 590 k~lenk~~~LrKqvEnk~K~ieeLqqe 616 (786)
T PF05483_consen 590 KILENKCNNLRKQVENKNKNIEELQQE 616 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444555777888877666655555443
No 61
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.47 E-value=28 Score=47.50 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=6.2
Q ss_pred CChHHHHHHHH
Q 000395 12 SNPCCRVWEDK 22 (1576)
Q Consensus 12 ~n~c~~qLKeK 22 (1576)
.||||--..+.
T Consensus 176 eNP~~~lsQD~ 186 (1074)
T KOG0250|consen 176 ENPMFVLSQDA 186 (1074)
T ss_pred CCcchhhcHHH
Confidence 57776554443
No 62
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.01 E-value=35 Score=46.73 Aligned_cols=68 Identities=26% Similarity=0.338 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000395 325 RKKLEAEKQMLSKEREHAHLEMAKAEDQRKLAEASRKQAEEEKCHAERLSQQLEEAGQRIVELQKETNDLV 395 (1576)
Q Consensus 325 KkKLEkEK~klk~Er~dl~aE~akaqearklAe~akkKA~eEK~~adQLe~QL~Eak~KleElerq~~EL~ 395 (1576)
...++.....++.|..++..+...++.++..++. .....+...+++..++...+.++...+.++.++.
T Consensus 656 ~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~---~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~ 723 (1074)
T KOG0250|consen 656 EFSFDDEIEDLEREASRLQKEILELENQRREAEK---NLEELEKKLRELSEHIEQIKRRIRKKRAEMTELK 723 (1074)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566666666666666666666555433333 2333333445555666666666666666666654
No 63
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=93.94 E-value=19 Score=43.40 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=10.8
Q ss_pred hhhhHHhhHHHHHHHHHHHHH
Q 000395 256 LMLVSEASKSEAVSKKLEAEK 276 (1576)
Q Consensus 256 lr~eEeQa~ieELleeLEaER 276 (1576)
.++.|+-....++.-+++.++
T Consensus 199 ~KaaEegqKA~ei~Lklekdk 219 (561)
T KOG1103|consen 199 LKAAEEGQKAEEIMLKLEKDK 219 (561)
T ss_pred HHHHHhhhhHHHHHHhhccCc
Confidence 333344455555655555554
No 64
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.83 E-value=33 Score=45.89 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 000395 483 ADHLSQQLEEARGRIDELQKQIHDL 507 (1576)
Q Consensus 483 ~d~LrEQLEEE~EaK~eLeRQLskl 507 (1576)
|-.|.+-.----.+...+|+.|...
T Consensus 793 ct~lm~aI~~Lv~as~~lQ~EIVas 817 (980)
T KOG0980|consen 793 CTALMEAIMALVKASRELQTEIVAS 817 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444445556666666543
No 65
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=93.80 E-value=33 Score=45.67 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000395 116 IRVTENEREIKRLKGEVEK 134 (1576)
Q Consensus 116 EeI~eLEeEieeLkqKLEk 134 (1576)
.++.+++++.++++.+++.
T Consensus 670 ~q~eel~Ke~kElq~rL~~ 688 (988)
T KOG2072|consen 670 RQIEELEKERKELQSRLQY 688 (988)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666653
No 66
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.70 E-value=31 Score=45.19 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=18.9
Q ss_pred HhHhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000395 477 QGKCLAADHLSQQLEEARGRIDELQKQIHDL 507 (1576)
Q Consensus 477 r~~e~d~d~LrEQLEEE~EaK~eLeRQLskl 507 (1576)
.+.+.+.+.|+.++++.+.....+-.++..+
T Consensus 356 ~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~ 386 (617)
T PF15070_consen 356 AQAEEERARLRRQLEEQKVQCQHLAHQVASA 386 (617)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 4444457778888887766555555555443
No 67
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.60 E-value=17 Score=41.84 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHHH
Q 000395 262 ASKSEAVSKKLEAEK 276 (1576)
Q Consensus 262 Qa~ieELleeLEaER 276 (1576)
+..++.|..+|+..+
T Consensus 203 e~~id~le~eL~~~k 217 (237)
T PF00261_consen 203 EKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 68
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.43 E-value=32 Score=44.49 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccHHH-HHHHHHHHHHHHHHHHH
Q 000395 81 SLENEISALKSEISILQRKKGGSNAQSIEE-VKLLDIRVTENEREIKR 127 (1576)
Q Consensus 81 ELEkeIsELKkqLEelEq~~~kle~Ek~~E-~K~LQEeI~eLEeEiee 127 (1576)
.||+++..++......+.-...-.-.++.+ ...+...+..++..+..
T Consensus 165 ~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~ 212 (560)
T PF06160_consen 165 ELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMED 212 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888877777643232211111122 44455555555554443
No 69
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.34 E-value=42 Score=45.56 Aligned_cols=33 Identities=9% Similarity=0.219 Sum_probs=20.5
Q ss_pred HhHhHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 000395 477 QGKCLAADHLSQQLEEARGRIDELQKQIHDLHS 509 (1576)
Q Consensus 477 r~~e~d~d~LrEQLEEE~EaK~eLeRQLskl~s 509 (1576)
...+++.+.+..++.+......++..++..+..
T Consensus 860 ~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~ 892 (1174)
T KOG0933|consen 860 DKVEKDVKKAQAELKDQKAKQRDIDTEISGLLT 892 (1174)
T ss_pred HhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhh
Confidence 444555666777777777666666666655433
No 70
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.23 E-value=0.025 Score=73.82 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 312 SMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEMAKA 349 (1576)
Q Consensus 312 ~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~aE~aka 349 (1576)
..+..+|+...+.+.+++.+..........+..+++.+
T Consensus 484 ~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~l 521 (713)
T PF05622_consen 484 EELQSQLEDANRRKEKLEEENREANEKILELQSQLEEL 521 (713)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555666655544443334444444433
No 71
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.01 E-value=24 Score=41.75 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 13 NPCCRVWEDKYKKSQGNRTALRQALKLFEQQ 43 (1576)
Q Consensus 13 n~c~~qLKeKleKLEe~RKeLEE~vklLEEK 43 (1576)
|.+|+.--++...||..-+.|+..+..+...
T Consensus 10 NdRla~YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 10 NDRLASYIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 4455555555555555555555555444444
No 72
>PRK01156 chromosome segregation protein; Provisional
Probab=92.98 E-value=47 Score=45.09 Aligned_cols=10 Identities=10% Similarity=0.102 Sum_probs=4.3
Q ss_pred cccccchhhh
Q 000395 618 VRMYLQSENE 627 (1576)
Q Consensus 618 ~~~~~~~e~~ 627 (1576)
+.+++.++..
T Consensus 799 ~~~lS~G~~~ 808 (895)
T PRK01156 799 IDSLSGGEKT 808 (895)
T ss_pred cccCCHhHHH
Confidence 3344444443
No 73
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.67 E-value=34 Score=42.74 Aligned_cols=50 Identities=26% Similarity=0.243 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 298 LQLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEMA 347 (1576)
Q Consensus 298 ~tLeeLRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~aE~a 347 (1576)
..++.++.++.....+++.++...+.-...+-.....++.+...+..+.+
T Consensus 199 ~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 199 AKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544444334444444444444444444444
No 74
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.60 E-value=28 Score=41.61 Aligned_cols=14 Identities=50% Similarity=0.674 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 000395 187 QLEALRKEAVDAKS 200 (1576)
Q Consensus 187 qiEkaRqElEkaKR 200 (1576)
.|..++.+++.++.
T Consensus 139 ~I~~L~k~le~~~k 152 (294)
T COG1340 139 KIKELRKELEDAKK 152 (294)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 75
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.54 E-value=0.035 Score=72.42 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 14 PCCRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKA 57 (1576)
Q Consensus 14 ~c~~qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~ka 57 (1576)
..+..+++.+.+++..+.+++..+..++..+.+++.++..|...
T Consensus 246 ~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~ 289 (713)
T PF05622_consen 246 AQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAE 289 (713)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556555555555555555555555544443
No 76
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.09 E-value=62 Score=44.37 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=20.8
Q ss_pred CcccccccccccccccCccccccccccc----hhhHH------HHHHHHHHHHH
Q 000395 1206 SSETLSESNSKINILLDGVDTTWSSEAA----SASQL------MAGSIILASIA 1249 (1576)
Q Consensus 1206 ~~~~~~~~~~~~~~~~d~~~~~~~~~~a----~~~q~------~a~s~ilasic 1249 (1576)
|+.-+. -|+.=.+++||+.-... .|- ..|+| |||=+||-||=
T Consensus 1018 g~AyL~-~en~~EPyl~GIky~~~-pP~KRFr~m~~LSGGEKTvAaLALLFaih 1069 (1141)
T KOG0018|consen 1018 GQAYLG-LENPEEPYLDGIKYHCM-PPGKRFRPMDNLSGGEKTVAALALLFAIH 1069 (1141)
T ss_pred cceeec-CCCCCcchhcCcccccc-CCccccCchhhcCccHHHHHHHHHHHHhc
Confidence 444433 33333668888875221 121 13333 66666666653
No 77
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.07 E-value=29 Score=40.51 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=4.0
Q ss_pred HHHHHHhhhHh
Q 000395 195 AVDAKSKLVLE 205 (1576)
Q Consensus 195 lEkaKRKLEgE 205 (1576)
+..++..++.+
T Consensus 140 ~~e~~~~~e~e 150 (239)
T COG1579 140 LAEAEARLEEE 150 (239)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 78
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.97 E-value=0.67 Score=60.95 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=17.5
Q ss_pred HhhHhHHHHhHHHHhhhhhhhhhhccC
Q 000395 562 HQELGRLKVDFAQFLHRLDTVDQCFSS 588 (1576)
Q Consensus 562 QqELEDL~vDl~~~~~~~~~ld~~~s~ 588 (1576)
+.|+.+|+-.+...--|+.-|=.+|+.
T Consensus 605 ~~e~~~l~~~~~~~ekr~~RLkevf~~ 631 (722)
T PF05557_consen 605 EKEIAELKAELASAEKRNQRLKEVFKA 631 (722)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777666643
No 79
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.67 E-value=56 Score=43.02 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 303 LRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEM 346 (1576)
Q Consensus 303 LRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~aE~ 346 (1576)
+..++.++.++...++..+.+....++.+..........+..+.
T Consensus 501 iqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL 544 (739)
T PF07111_consen 501 IQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQL 544 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555544444444333333
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.42 E-value=17 Score=42.29 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 000395 79 KVSLENEISALKSEISILQRKK 100 (1576)
Q Consensus 79 K~ELEkeIsELKkqLEelEq~~ 100 (1576)
...++.++.++.+++.+.+..+
T Consensus 61 v~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 61 VSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444
No 81
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.29 E-value=71 Score=43.46 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=28.1
Q ss_pred hhHHHhHHhhhhcCccccc-hhh-hHHHHhhhhHHHHHhhhhhhhhhhccccccccccc
Q 000395 771 KRLLHTVESIELLHSEDRK-LHL-QIEEKLSDLHNILNKQLDKTLEEANYTVANNQDAF 827 (1576)
Q Consensus 771 ~r~~~~~~~~~~l~s~~~~-l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1576)
+-+.+..|...+|.-+.+. ++. -.-||+-...+||-.+-..+.+.-+.+-+--.+++
T Consensus 885 ~~~~~~lE~~~~lek~~~~~~~~dKe~Ek~~~rk~~Ll~KreE~~ekIr~lG~Lp~daf 943 (1200)
T KOG0964|consen 885 KEIKKELEKAKNLEKEKKDNINFDKELEKLVRRKHMLLKKREECCEKIRELGVLPEDAF 943 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 3455556666666544332 222 22356666666666654555555444444334443
No 82
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.21 E-value=32 Score=39.35 Aligned_cols=128 Identities=21% Similarity=0.138 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000395 111 VKLLDIRVTENEREIKRLKGEVEKEKIRAESEKKNAEVEKKRAAEAWKCVEAEKGKAEEERRRANIEGKKAEEYKLQLEA 190 (1576)
Q Consensus 111 ~K~LQEeI~eLEeEieeLkqKLEkEKk~aeeekkkaEEekkkaEE~~kkLe~EK~k~EEEK~ka~eelKKveELekqiEk 190 (1576)
.-.+...+..++.....+..++++-|....--+++-+.-++-.++...++..+..+-+.=+.++. .+++.
T Consensus 78 rdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe----------ekL~~ 147 (207)
T PF05010_consen 78 RDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAE----------EKLEK 147 (207)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 44556677788888888888888877766666666666666666666666655433222222222 23445
Q ss_pred HHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHH
Q 000395 191 LRKEAVDAKSKLVLESSKLGDMTKKLESEKQKVSKEKKRANNEGKKAEEYIIQLEALRKEAGDAKLMLVSEASKSEAVSK 270 (1576)
Q Consensus 191 aRqElEkaKRKLEgELk~AqEA~kklEeEKqkaeeekKkAE~E~keAEe~k~qaeqLrkEaeQKKlr~eEeQa~ieELle 270 (1576)
+..+++..+++...++..++-.+++.+-.. .-|...++|+...-+|+....++|-.
T Consensus 148 ANeei~~v~~~~~~e~~aLqa~lkk~e~~~------------------------~SLe~~LeQK~kEn~ELtkICDeLI~ 203 (207)
T PF05010_consen 148 ANEEIAQVRSKHQAELLALQASLKKEEMKV------------------------QSLEESLEQKTKENEELTKICDELIS 203 (207)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444444433332222 22222334444433477777788765
Q ss_pred HH
Q 000395 271 KL 272 (1576)
Q Consensus 271 eL 272 (1576)
++
T Consensus 204 k~ 205 (207)
T PF05010_consen 204 KM 205 (207)
T ss_pred Hh
Confidence 54
No 83
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.71 E-value=62 Score=41.76 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=8.5
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 000395 221 QKVSKEKKRANNEGKKAEEY 240 (1576)
Q Consensus 221 qkaeeekKkAE~E~keAEe~ 240 (1576)
..+..+...++.+....+.+
T Consensus 428 ~ei~~~~~~~~~~~~tLq~~ 447 (581)
T KOG0995|consen 428 DEISEELHEAENELETLQEH 447 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 84
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.15 E-value=65 Score=41.09 Aligned_cols=15 Identities=13% Similarity=0.147 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 000395 39 LFEQQLDKIQAENLS 53 (1576)
Q Consensus 39 lLEEKldqLQaE~~~ 53 (1576)
.++.++..++.+...
T Consensus 178 e~~~~i~~l~~~i~~ 192 (562)
T PHA02562 178 ELNQQIQTLDMKIDH 192 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 85
>PRK09039 hypothetical protein; Validated
Probab=89.85 E-value=29 Score=42.38 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000395 167 AEEERRRANIEGKKAEEYKLQLEALRKEA 195 (1576)
Q Consensus 167 ~EEEK~ka~eelKKveELekqiEkaRqEl 195 (1576)
..+.+....+...++..++.+|+.+|..+
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQL 153 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33444444455555556666666655553
No 86
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.74 E-value=9.5 Score=50.58 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=25.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 16 CRVWEDKY-KKSQGNRTALRQALKLFEQQLDKIQAENLSLKK 56 (1576)
Q Consensus 16 ~~qLKeKl-eKLEe~RKeLEE~vklLEEKldqLQaE~~~L~k 56 (1576)
.+.+++.| .+....|.+++.++..|..+.++-..+...+.+
T Consensus 545 ~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e 586 (717)
T PF10168_consen 545 TKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQE 586 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556664 556777777777777777766644444444433
No 87
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=89.62 E-value=68 Score=40.50 Aligned_cols=13 Identities=0% Similarity=-0.079 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 000395 37 LKLFEQQLDKIQA 49 (1576)
Q Consensus 37 vklLEEKldqLQa 49 (1576)
++.|+..+.-|+.
T Consensus 333 IqdLq~sN~yLe~ 345 (527)
T PF15066_consen 333 IQDLQCSNLYLEK 345 (527)
T ss_pred HHHhhhccHHHHH
Confidence 4444443333333
No 88
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=89.00 E-value=50 Score=38.14 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 000395 86 ISALKSEISILQR 98 (1576)
Q Consensus 86 IsELKkqLEelEq 98 (1576)
+..++.+++..+.
T Consensus 3 ~~~l~~eld~~~~ 15 (237)
T PF00261_consen 3 IQQLKDELDEAEE 15 (237)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4445555554443
No 89
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=88.90 E-value=1.1e+02 Score=41.97 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=9.7
Q ss_pred Cccccccchhhhhc
Q 000395 616 LPVRMYLQSENELQ 629 (1576)
Q Consensus 616 ~~~~~~~~~e~~l~ 629 (1576)
.|+..++-+|.-+.
T Consensus 811 r~~~~LSGGE~~~~ 824 (908)
T COG0419 811 RPIKTLSGGERFLA 824 (908)
T ss_pred cccccCCchHHHHH
Confidence 35667788887774
No 90
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.42 E-value=76 Score=38.40 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=10.1
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHH
Q 000395 70 KGREEVSAAKVSLENEISALKSEIS 94 (1576)
Q Consensus 70 ~krEeEsk~K~ELEkeIsELKkqLE 94 (1576)
++-......+..|+..+..|+.+..
T Consensus 142 WR~~ll~gl~~~L~~~~~~L~~D~~ 166 (325)
T PF08317_consen 142 WRMQLLEGLKEGLEENLELLQEDYA 166 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444333
No 91
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.37 E-value=1.3e+02 Score=41.13 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Q 000395 12 SNPCCRVWEDKYKKSQGNRTALRQA 36 (1576)
Q Consensus 12 ~n~c~~qLKeKleKLEe~RKeLEE~ 36 (1576)
.|--+.-+.+++..+|+++++|+.=
T Consensus 189 I~ell~yieerLreLEeEKeeL~~Y 213 (1200)
T KOG0964|consen 189 INELLKYIEERLRELEEEKEELEKY 213 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4455566677777777766666543
No 92
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.71 E-value=38 Score=39.55 Aligned_cols=93 Identities=24% Similarity=0.282 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 000395 25 KSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISILQRKKGGSN 104 (1576)
Q Consensus 25 KLEe~RKeLEE~vklLEEKldqLQaE~~~L~kalEEErlree~Er~krEeEsk~K~ELEkeIsELKkqLEelEq~~~kle 104 (1576)
..|..+.+|+.++..++++....+.+... . +++.....++.+.. ...+..|+....+++....+++.......
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e---~--e~~a~~Leek~k~a--eeea~~Le~k~~eaee~~~rL~~~~~~~~ 74 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEE---S--EETAEELEEKLKQA--EEEAEELEQKRQEAEEEKQRLEEEAEMQE 74 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665543332211 1 22222222222222 22334566666666666555554333222
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Q 000395 105 AQSIEEVKLLDIRVTENEREIKRL 128 (1576)
Q Consensus 105 ~Ek~~E~K~LQEeI~eLEeEieeL 128 (1576)
.+...|..++...+..+..+
T Consensus 75 ----eEk~~Le~e~~e~~~~i~~l 94 (246)
T PF00769_consen 75 ----EEKEQLEQELREAEAEIARL 94 (246)
T ss_dssp ----------HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHH
Confidence 33445666677777766633
No 93
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=86.55 E-value=1.6e+02 Score=41.36 Aligned_cols=83 Identities=23% Similarity=0.238 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhcCeEEEeecCCcccccccccccccc------cCccccccccccchhhHHHHHHHHHHHHHhhccccc
Q 000395 1183 LDELLSLIEDFLMEGKVMTCTDLSSETLSESNSKINIL------LDGVDTTWSSEAASASQLMAGSIILASIATATDCIG 1256 (1576)
Q Consensus 1183 ld~ll~liedfl~~~~v~~~~~~~~~~~~~~~~~~~~~------~d~~~~~~~~~~a~~~q~~a~s~ilasic~~~~~~~ 1256 (1576)
.-.+.=|+|.=.--|-++...+ ..|...+|+++ .||.-+.+-++.-..+.++= -|.....-++.
T Consensus 925 iSGIiIL~erPfrVGD~I~I~~-----~~GtV~~I~lRsT~Irt~Dg~~IiIPNs~~it~~IiN-----~S~~d~~~Rv~ 994 (1109)
T PRK10929 925 ISGLIILFEKPIRIGDTVTIRD-----LTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFIN-----WSLSDSVTRVV 994 (1109)
T ss_pred HHHHHHHHhCCCCCCCEEEECC-----EEEEEEEEeeeEEEEEeCCCCEEEEEChhhhcCceEe-----cCCCCcceEEE
Confidence 3333444554344455554432 34566666654 68888877666544444332 22222223667
Q ss_pred cchhhhHHHHHhhcCChhHHHHHHH
Q 000395 1257 FICGASYNIFRKHTSDPSLVLMILH 1281 (1576)
Q Consensus 1257 ~i~~~sy~il~~~~~~~~~~l~~lh 1281 (1576)
+...++|+ +|+..+--+|.
T Consensus 995 i~VgV~Y~------sDie~v~~iL~ 1013 (1109)
T PRK10929 995 LTIPAPAD------ANSEEVTEILL 1013 (1109)
T ss_pred EEEEeCCC------CCHHHHHHHHH
Confidence 77778874 56666665554
No 94
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=86.47 E-value=1.8e+02 Score=41.83 Aligned_cols=245 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000395 115 DIRVTENEREIKRLKGEVEKEKIRAESEKKNAEVEKKRAAEAWKCVEAEKGKAEEERRRANIEGKKAEEYKLQLEALRKE 194 (1576)
Q Consensus 115 QEeI~eLEeEieeLkqKLEkEKk~aeeekkkaEEekkkaEE~~kkLe~EK~k~EEEK~ka~eelKKveELekqiEkaRqE 194 (1576)
+.+|.+++.+|. .+..+....+.+....+............+-.+.... ............+.....++..++..
T Consensus 741 ~~ri~el~~~Ia----eL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~-~A~~~l~~A~~~~~~a~~~l~~a~~~ 815 (1353)
T TIGR02680 741 LRRIAELDARLA----AVDDELAELARELRALGARQRALADELAGAPSDRSLR-AAHRRAAEAERQAESAERELARAARK 815 (1353)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhHhhhhHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHH
Q 000395 195 AVDAKSKLVLESSKLGDMTKK-----LESEKQKVSKEKKRANNEGKKAEEYIIQLEALRKEAGDAKLMLVSEASKSEAVS 269 (1576)
Q Consensus 195 lEkaKRKLEgELk~AqEA~kk-----lEeEKqkaeeekKkAE~E~keAEe~k~qaeqLrkEaeQKKlr~eEeQa~ieELl 269 (1576)
+..+.+.+........++... -......+...................+.........+...++++.+..+++..
T Consensus 816 l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~ 895 (1353)
T TIGR02680 816 AAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAA 895 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 270 KKLEAEKQMVCKERQRANIEGKKAEEYRLQLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEMAKA 349 (1576)
Q Consensus 270 eeLEaERq~AkaEKqRaD~EL~KarEae~tLeeLRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~aE~aka 349 (1576)
.++.. ...+......++..++..+.....++..+|+.+.+.-..+.++...+..+...+......+
T Consensus 896 ~e~~~--------------~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a 961 (1353)
T TIGR02680 896 EDAAE--------------ARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRA 961 (1353)
T ss_pred HHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 350 EDQRKLAEASRKQAEEEKCHAERLSQQLE 378 (1576)
Q Consensus 350 qearklAe~akkKA~eEK~~adQLe~QL~ 378 (1576)
.++...++.........+.....+...+.
T Consensus 962 ~~~~~~a~~~~~~~~~~~~~~~~~~~e~~ 990 (1353)
T TIGR02680 962 EEKRAEADATLDERAEARDHAIGQLREFA 990 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 95
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.55 E-value=87 Score=37.25 Aligned_cols=18 Identities=33% Similarity=0.566 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000395 80 VSLENEISALKSEISILQ 97 (1576)
Q Consensus 80 ~ELEkeIsELKkqLEelE 97 (1576)
..++.+|..|..++++..
T Consensus 48 ~~~q~ei~~L~~qi~~~~ 65 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQ 65 (265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555443
No 96
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=85.24 E-value=1.1 Score=59.08 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 000395 370 AERLSQQLEEAGQRIVELQKETN 392 (1576)
Q Consensus 370 adQLe~QL~Eak~KleElerq~~ 392 (1576)
.+.++..+..++.++..++.++.
T Consensus 512 ~~~Le~e~~~L~~~~~~Le~~l~ 534 (722)
T PF05557_consen 512 IEELERENERLRQELEELESELE 534 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 97
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.00 E-value=62 Score=35.09 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 19 WEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKA 57 (1576)
Q Consensus 19 LKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~ka 57 (1576)
|++++..+++..+.-+.....|+.++..++.+.......
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~ 39 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQEN 39 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Confidence 567777777777777777777887777777766655554
No 98
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=84.74 E-value=35 Score=44.41 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=22.6
Q ss_pred ccccccccCCCCcccccccccCCCCcccccccCCCccccccccccccCCcccccc
Q 000395 647 QQIAPSLALSGGICSESMSGIDSKDPKLESLLGGSSRKMFQSSAINSSSASFSDR 701 (1576)
Q Consensus 647 ~~~~~~~~~~~~~~~~~isg~~s~~~~le~~~g~s~~~~~~~~~~~s~~~s~sd~ 701 (1576)
..++.|++++-||.- ||.-|.- .-+|-+- -+...-++..|++++++-|.
T Consensus 655 alm~ql~pl~hgn~n-s~~~ii~--E~qE~~k---~~~~~sn~t~~p~~~~~~~~ 703 (811)
T KOG4364|consen 655 ALMVQLFPLSHGNEN-SINDIID--EDQEASK---FSCSQSNPTSNPKAKIIPDS 703 (811)
T ss_pred HHHHHHhhhhccccc-chHHHHH--HHHHHHH---HhhhccCCCCCCCCcccccc
Confidence 556667777777653 3333332 1222221 12223344455666666554
No 99
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.70 E-value=1.5e+02 Score=39.35 Aligned_cols=22 Identities=36% Similarity=0.295 Sum_probs=12.8
Q ss_pred cccCCcccccccccccccCCce
Q 000395 691 INSSSASFSDRQLMGSQERGAF 712 (1576)
Q Consensus 691 ~~s~~~s~sd~~l~gsq~~~~~ 712 (1576)
.-||++|-+|+-.-|--.+|.-
T Consensus 502 ~~~s~~S~~d~l~~~~~~~g~~ 523 (916)
T KOG0249|consen 502 NPSSSASSQDSLHKGPKKKGIK 523 (916)
T ss_pred cccccccccCCCCCCCCCCCch
Confidence 3456667777765555555544
No 100
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=84.14 E-value=52 Score=38.43 Aligned_cols=14 Identities=29% Similarity=0.295 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHH
Q 000395 151 KRAAEAWKCVEAEK 164 (1576)
Q Consensus 151 kkaEE~~kkLe~EK 164 (1576)
..+++...++....
T Consensus 57 ~eaee~~~rL~~~~ 70 (246)
T PF00769_consen 57 QEAEEEKQRLEEEA 70 (246)
T ss_dssp HHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444333
No 101
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.51 E-value=1.6e+02 Score=38.80 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 000395 116 IRVTENEREIK 126 (1576)
Q Consensus 116 EeI~eLEeEie 126 (1576)
.++.+++.++.
T Consensus 209 ~~~~~le~el~ 219 (650)
T TIGR03185 209 SEIEALEAELK 219 (650)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 102
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=83.06 E-value=1.5e+02 Score=38.11 Aligned_cols=93 Identities=14% Similarity=0.218 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 299 QLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEMAKAEDQRKLAEASRKQAEEEKCHAERLSQQLE 378 (1576)
Q Consensus 299 tLeeLRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~aE~akaqearklAe~akkKA~eEK~~adQLe~QL~ 378 (1576)
.+.++..-..+++..+..+|..+.. ++..=.+.+.-....+...+..+.....- .-++..+..-.--+.+...+.
T Consensus 341 ~LqEksqile~sv~~l~~~lkDLd~---~~~aLs~rld~qEqtL~~rL~e~~~e~~~--~~r~~lekl~~~q~e~~~~l~ 415 (531)
T PF15450_consen 341 LLQEKSQILEDSVAELMRQLKDLDD---HILALSWRLDLQEQTLNLRLSEAKNEWES--DERKSLEKLDQWQNEMEKHLK 415 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666555543332 33333333433334444444433322211 111111111101234556677
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 000395 379 EAGQRIVELQKETNDLVS 396 (1576)
Q Consensus 379 Eak~KleElerq~~EL~s 396 (1576)
+.+.+++.+-.++.++..
T Consensus 416 ~v~eKVd~LpqqI~~vs~ 433 (531)
T PF15450_consen 416 EVQEKVDSLPQQIEEVSD 433 (531)
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 777777777777777653
No 103
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=82.25 E-value=1.8e+02 Score=38.48 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=9.0
Q ss_pred hHhhHhHHHHhHHHHhhh
Q 000395 561 LHQELGRLKVDFAQFLHR 578 (1576)
Q Consensus 561 LQqELEDL~vDl~~~~~~ 578 (1576)
|--||..+..|+.++-..
T Consensus 744 LE~ELs~lk~el~slK~Q 761 (786)
T PF05483_consen 744 LELELSNLKNELSSLKKQ 761 (786)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 345555555555554433
No 104
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.22 E-value=2e+02 Score=38.77 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 12 SNPCCRVWEDKYKKSQGNRTALRQALKLFEQQLD 45 (1576)
Q Consensus 12 ~n~c~~qLKeKleKLEe~RKeLEE~vklLEEKld 45 (1576)
.=+.+.+|+..+..+|.++..|...++..+.+++
T Consensus 263 ~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe 296 (717)
T PF09730_consen 263 NLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLE 296 (717)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3457889999999999888888888888887776
No 105
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=80.92 E-value=69 Score=39.83 Aligned_cols=18 Identities=22% Similarity=0.170 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000395 79 KVSLENEISALKSEISIL 96 (1576)
Q Consensus 79 K~ELEkeIsELKkqLEel 96 (1576)
-.+||.+-.-|.+++++.
T Consensus 210 mdkLe~ekr~Lq~KlDqp 227 (552)
T KOG2129|consen 210 MDKLEQEKRYLQKKLDQP 227 (552)
T ss_pred HHHHHHHHHHHHHHhcCc
Confidence 346666666777777553
No 106
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=80.73 E-value=81 Score=33.37 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHH
Q 000395 183 EYKLQLEALRKEAVDAKSKLVLESSKLGDMTKKLESE 219 (1576)
Q Consensus 183 ELekqiEkaRqElEkaKRKLEgELk~AqEA~kklEeE 219 (1576)
.++.++..++.+++.++..|......+.+....++.+
T Consensus 70 ~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e 106 (132)
T PF07926_consen 70 ELQQEINELKAEAESAKAELEESEASWEEQKEQLEKE 106 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3334455555555555555544444444444444333
No 107
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.02 E-value=93 Score=33.64 Aligned_cols=12 Identities=17% Similarity=0.374 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 000395 264 KSEAVSKKLEAE 275 (1576)
Q Consensus 264 ~ieELleeLEaE 275 (1576)
+|..|.++|+..
T Consensus 81 riq~LEeele~a 92 (143)
T PF12718_consen 81 RIQLLEEELEEA 92 (143)
T ss_pred hHHHHHHHHHHH
Confidence 344444444443
No 108
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=79.83 E-value=81 Score=34.18 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 000395 302 ALRREADDA 310 (1576)
Q Consensus 302 eLRKKh~dS 310 (1576)
+++..+.+-
T Consensus 137 ~l~~~v~~l 145 (156)
T CHL00118 137 SLEEQVDTL 145 (156)
T ss_pred HHHHHHHHH
Confidence 334444433
No 109
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=78.69 E-value=1.3e+02 Score=34.39 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 12 SNPCCRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQ 59 (1576)
Q Consensus 12 ~n~c~~qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~kalE 59 (1576)
-+.|+..|.....++..+-..|...+..+++-+.+|..++..|.+.+.
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777666666666666666666666666666655533
No 110
>PLN03188 kinesin-12 family protein; Provisional
Probab=78.69 E-value=1.8e+02 Score=41.21 Aligned_cols=22 Identities=23% Similarity=0.025 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhhhHhhhh
Q 000395 187 QLEALRKEAVDAKSKLVLESSK 208 (1576)
Q Consensus 187 qiEkaRqElEkaKRKLEgELk~ 208 (1576)
+-+++++++++.|||-+.|...
T Consensus 1226 e~~~~~k~~~klkrkh~~e~~t 1247 (1320)
T PLN03188 1226 EAAEAYKQIDKLKRKHENEIST 1247 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 111
>PRK11281 hypothetical protein; Provisional
Probab=78.05 E-value=3.2e+02 Score=38.71 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=28.8
Q ss_pred cccccccccc------cCccccccccccchhhHHHHHHHHHHHHHhhccccccchhhhHHHHHhhcCChhHHHHHH
Q 000395 1211 SESNSKINIL------LDGVDTTWSSEAASASQLMAGSIILASIATATDCIGFICGASYNIFRKHTSDPSLVLMIL 1280 (1576)
Q Consensus 1211 ~~~~~~~~~~------~d~~~~~~~~~~a~~~q~~a~s~ilasic~~~~~~~~i~~~sy~il~~~~~~~~~~l~~l 1280 (1576)
.|...+|+++ .||.-+.+.++.-..+. ++=-|.-...-++.+-..++|.. |+.-+.-+|
T Consensus 951 ~G~V~~I~lRsT~Irt~D~~~ViIPNs~~~t~~-----IiN~S~~~~~~Rv~i~vgV~Y~s------Di~~v~~iL 1015 (1113)
T PRK11281 951 SGTVSKIRIRATTITDFDRKEVIVPNKAFVTER-----LINWSLSDTVTRVVIKVGVAYGS------DLEKVRELL 1015 (1113)
T ss_pred EEEEEEEEeEEEEEEcCCCCEEEEechhhhcCc-----eEeCCCCCcceEEEEEEEeCCCC------CHHHHHHHH
Confidence 4455555532 57777766554433333 22223222233566666777753 555554444
No 112
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=77.44 E-value=1.7e+02 Score=38.27 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000395 17 RVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISIL 96 (1576)
Q Consensus 17 ~qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~kalEEErlree~Er~krEeEsk~K~ELEkeIsELKkqLEel 96 (1576)
....+++.+++-.+.-|.=.+..|.++...--+++..|+--+++.+.+.-..++...++--.+..||-+.-+|=.++.++
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeL 186 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSEL 186 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHh
Confidence 36778999999888888888888888876544455556666665554433333333333333345555555565566655
Q ss_pred HHhhcCCCccc
Q 000395 97 QRKKGGSNAQS 107 (1576)
Q Consensus 97 Eq~~~kle~Ek 107 (1576)
+.++..+++++
T Consensus 187 KLkltalEkeq 197 (861)
T KOG1899|consen 187 KLKLTALEKEQ 197 (861)
T ss_pred HHHHHHHHHHh
Confidence 55555554443
No 113
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.38 E-value=2.8e+02 Score=37.63 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 000395 378 EEAGQRIVELQKETNDLV 395 (1576)
Q Consensus 378 ~Eak~KleElerq~~EL~ 395 (1576)
+..+.++.-+++.+.+|.
T Consensus 921 ~~~~~~i~alk~~l~dL~ 938 (970)
T KOG0946|consen 921 ADQKEKIQALKEALEDLN 938 (970)
T ss_pred hhHHHHHHHHHHHHHHhC
Confidence 334444445555555544
No 114
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=76.87 E-value=2.8e+02 Score=37.32 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=4.7
Q ss_pred HHhHHHHhhhh
Q 000395 569 KVDFAQFLHRL 579 (1576)
Q Consensus 569 ~vDl~~~~~~~ 579 (1576)
.-+|++...|+
T Consensus 1225 ~~eFe~~W~r~ 1235 (1259)
T KOG0163|consen 1225 EHEFEREWERN 1235 (1259)
T ss_pred hHHHHHHHHHh
Confidence 33444444443
No 115
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.59 E-value=85 Score=39.55 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=9.1
Q ss_pred HHhhHHHHHHHHHHHHH
Q 000395 260 SEASKSEAVSKKLEAEK 276 (1576)
Q Consensus 260 EeQa~ieELleeLEaER 276 (1576)
..+.++.++.+++..++
T Consensus 386 q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 386 QLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555554
No 116
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=76.36 E-value=62 Score=43.70 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 125 IKRLKGEVEKEKIRAESEKKNAEVEKKRAAEAWKCVEAEKGKAEEERRR 173 (1576)
Q Consensus 125 ieeLkqKLEkEKk~aeeekkkaEEekkkaEE~~kkLe~EK~k~EEEK~k 173 (1576)
+.++-++++.+++..++++..++..+...++..+.++.+..+.++++..
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 566 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK 566 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344544444444444444444444444444444444444333333
No 117
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=76.26 E-value=2.5e+02 Score=36.47 Aligned_cols=16 Identities=6% Similarity=0.459 Sum_probs=7.4
Q ss_pred HHHHhhhhhhhhhhcc
Q 000395 572 FAQFLHRLDTVDQCFS 587 (1576)
Q Consensus 572 l~~~~~~~~~ld~~~s 587 (1576)
|+.+-+.|+-..++|+
T Consensus 442 le~i~~~~~gv~~~~a 457 (514)
T TIGR03319 442 LEEIANSFEGVEKSYA 457 (514)
T ss_pred HHHHHHhCCCchhhhh
Confidence 4444444444444443
No 118
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.10 E-value=2.5e+02 Score=36.45 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 000395 37 LKLFEQQLDKIQ 48 (1576)
Q Consensus 37 vklLEEKldqLQ 48 (1576)
.+.|.+++++++
T Consensus 340 ~kdLkEkv~~lq 351 (654)
T KOG4809|consen 340 NKDLKEKVNALQ 351 (654)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 119
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=75.53 E-value=2.6e+02 Score=36.46 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=32.9
Q ss_pred HhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhccccchhhhhhhHHHHHH
Q 000395 479 KCLAADHLSQQLEEARGRIDELQKQIHDLHSSRKSFDASAIQVDKYVDSGKAKL 532 (1576)
Q Consensus 479 ~e~d~d~LrEQLEEE~EaK~eLeRQLskl~s~RkK~Ete~i~~~EeLEEAKKKL 532 (1576)
...+.+.|.++.++-.++...+++-|+..+..|..++ ...+.+.+|..-.
T Consensus 481 ~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~----~V~~~f~~Ae~lF 530 (569)
T PRK04778 481 ATEDVETLEEETEELVENATLTEQLIQYANRYRSDNE----EVAEALNEAERLF 530 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHH
Confidence 3344777888888888888888888888666666665 2234444444333
No 120
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=75.17 E-value=2.8e+02 Score=36.56 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 82 LENEISALKSEISILQRKKGGSNAQSIEEVKLLDIRVTENEREIKRLKGEVEK 134 (1576)
Q Consensus 82 LEkeIsELKkqLEelEq~~~kle~Ek~~E~K~LQEeI~eLEeEieeLkqKLEk 134 (1576)
.+.+..+|+.++++.+..+. +.+.++..++.+.+.+..+.++++.
T Consensus 119 ~~~e~~~lk~~lee~~~el~--------~~k~qq~~v~~l~e~l~k~~~~~~~ 163 (629)
T KOG0963|consen 119 ASEENEELKEELEEVNNELA--------DLKTQQVTVRNLKERLRKLEQLLEI 163 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHh--------hhhhhHHHHHhHHHHHHHHHHHHHH
Confidence 45566667766666554333 2445556666666666655444443
No 121
>PRK09039 hypothetical protein; Validated
Probab=74.90 E-value=2.1e+02 Score=35.09 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 000395 81 SLENEISALKSEISILQRKKGGSNAQSIEEVKLLDIRVTENEREIKRL 128 (1576)
Q Consensus 81 ELEkeIsELKkqLEelEq~~~kle~Ek~~E~K~LQEeI~eLEeEieeL 128 (1576)
.++.....+..++..++....... .++..|+.+|..+..++..+
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~----~~V~~L~~qI~aLr~Qla~l 156 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARAL----AQVELLNQQIAALRRQLAAL 156 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555443333111 22445555555555555433
No 122
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=74.51 E-value=1.3e+02 Score=32.51 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000395 111 VKLLDIRVTENEREIKRLKGEVE 133 (1576)
Q Consensus 111 ~K~LQEeI~eLEeEieeLkqKLE 133 (1576)
+..|+.++..++.++..+..++.
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554444443
No 123
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=74.50 E-value=1.4e+02 Score=32.85 Aligned_cols=9 Identities=44% Similarity=0.737 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 000395 301 EALRREADD 309 (1576)
Q Consensus 301 eeLRKKh~d 309 (1576)
.++++++.+
T Consensus 132 ~~l~~~i~~ 140 (175)
T PRK14472 132 DVLRNEVAD 140 (175)
T ss_pred HHHHHHHHH
Confidence 334444443
No 124
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=74.15 E-value=74 Score=42.96 Aligned_cols=44 Identities=20% Similarity=0.127 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 124 EIKRLKGEVEKEKIRAESEKKNAEVEKKRAAEAWKCVEAEKGKA 167 (1576)
Q Consensus 124 EieeLkqKLEkEKk~aeeekkkaEEekkkaEE~~kkLe~EK~k~ 167 (1576)
++.++-++++.++...+.++..++..++.+++..++++.+....
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 555 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEEL 555 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444443333
No 125
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=73.84 E-value=1.4e+02 Score=34.03 Aligned_cols=14 Identities=7% Similarity=0.280 Sum_probs=5.2
Q ss_pred hhHhhhhHHHHHHH
Q 000395 202 LVLESSKLGDMTKK 215 (1576)
Q Consensus 202 LEgELk~AqEA~kk 215 (1576)
..+.+..+++.+..
T Consensus 84 I~~~L~~Ae~~~~e 97 (205)
T PRK06231 84 IEAEINQANELKQQ 97 (205)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 126
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=73.73 E-value=3.3e+02 Score=36.66 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000395 358 ASRKQAEEEKCHAERLSQQLEEAGQRIVELQKETNDLV 395 (1576)
Q Consensus 358 ~akkKA~eEK~~adQLe~QL~Eak~KleElerq~~EL~ 395 (1576)
..++++...+..++.+..++.....++++++++..++.
T Consensus 556 ~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~ 593 (698)
T KOG0978|consen 556 MLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELE 593 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666677888888888888888888888854
No 127
>PRK11281 hypothetical protein; Provisional
Probab=73.56 E-value=4.1e+02 Score=37.74 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=9.9
Q ss_pred hhHhHHHHhHHHHhhhhhhhh
Q 000395 563 QELGRLKVDFAQFLHRLDTVD 583 (1576)
Q Consensus 563 qELEDL~vDl~~~~~~~~~ld 583 (1576)
.++-.++++..|+....+.+.
T Consensus 428 ~~~~~l~~~q~Ql~~~~~~l~ 448 (1113)
T PRK11281 428 NLAINLQLNQQQLLSVSDSLQ 448 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455544444444
No 128
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=72.60 E-value=1.8e+02 Score=33.15 Aligned_cols=28 Identities=14% Similarity=0.244 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000395 210 GDMTKKLESEKQKVSKEKKRANNEGKKA 237 (1576)
Q Consensus 210 qEA~kklEeEKqkaeeekKkAE~E~keA 237 (1576)
++..+..+.....++...+..+.++...
T Consensus 74 r~~LR~~q~~~r~~~~klk~~~~el~k~ 101 (194)
T PF15619_consen 74 RERLRKSQEQERELERKLKDKDEELLKT 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444443
No 129
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=71.61 E-value=84 Score=34.53 Aligned_cols=18 Identities=22% Similarity=0.028 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000395 298 LQLEALRREADDAKSMLG 315 (1576)
Q Consensus 298 ~tLeeLRKKh~dS~~EL~ 315 (1576)
..+.++|.++.+-.-.+.
T Consensus 115 ~Al~elr~eva~Lav~iA 132 (154)
T PRK06568 115 TASKELQDEFCDEVIKLV 132 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666665544443
No 130
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=71.29 E-value=2.4e+02 Score=34.15 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=17.7
Q ss_pred HhHhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000395 477 QGKCLAADHLSQQLEEARGRIDELQKQIHD 506 (1576)
Q Consensus 477 r~~e~d~d~LrEQLEEE~EaK~eLeRQLsk 506 (1576)
-+...+.-.|++||++....-..-++-+..
T Consensus 224 ~QlqsEN~LLrQQLddA~~K~~~kek~Vin 253 (305)
T PF14915_consen 224 SQLQSENMLLRQQLDDAHNKADNKEKTVIN 253 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555667888888877554444444433
No 131
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=71.19 E-value=1.1e+02 Score=33.69 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=7.5
Q ss_pred HhhhHhhhhHHHHHHHHHHH
Q 000395 200 SKLVLESSKLGDMTKKLESE 219 (1576)
Q Consensus 200 RKLEgELk~AqEA~kklEeE 219 (1576)
.++.+++..+.+....++..
T Consensus 56 ~~I~~~l~~Ae~~~~ea~~~ 75 (167)
T PRK08475 56 NKISKRLEEIQEKLKESKEK 75 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 132
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.87 E-value=2.5e+02 Score=34.10 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000395 80 VSLENEISALKSEISILQ 97 (1576)
Q Consensus 80 ~ELEkeIsELKkqLEelE 97 (1576)
++|.+.|.+-+..+.+.+
T Consensus 78 ~EL~~~I~egr~~~~~~E 95 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIE 95 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444544444444443
No 133
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.56 E-value=3e+02 Score=34.87 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=29.5
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc---HHHHHHHHHHHHHHHHHHH
Q 000395 70 KGREEVSAAKVSLENEISALKSEISILQRKKGGSNAQS---IEEVKLLDIRVTENEREIK 126 (1576)
Q Consensus 70 ~krEeEsk~K~ELEkeIsELKkqLEelEq~~~kle~Ek---~~E~K~LQEeI~eLEeEie 126 (1576)
.-.+--...+.+++.++.-|+.++.+++......+... -.|+-.|+-+.-.|+++..
T Consensus 208 l~~e~mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~r 267 (502)
T KOG0982|consen 208 LLVEGMEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRR 267 (502)
T ss_pred hhhhhhhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455677777777777777754333222111 2334455555555555554
No 134
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=70.14 E-value=1.2e+02 Score=40.57 Aligned_cols=24 Identities=4% Similarity=0.184 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 36 ALKLFEQQLDKIQAENLSLKKACQ 59 (1576)
Q Consensus 36 ~vklLEEKldqLQaE~~~L~kalE 59 (1576)
...-|++++.++..+....+..++
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~l~ 218 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAEVA 218 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556555555555544444443
No 135
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.76 E-value=3.5e+02 Score=35.37 Aligned_cols=39 Identities=13% Similarity=0.040 Sum_probs=26.0
Q ss_pred HhHhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhc
Q 000395 477 QGKCLAADHLSQQLEEARGRIDELQKQIHDLHSSRKSFD 515 (1576)
Q Consensus 477 r~~e~d~d~LrEQLEEE~EaK~eLeRQLskl~s~RkK~E 515 (1576)
.....+.+.|.+.-++--..-.=.++-++=.|..|..+.
T Consensus 475 ~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRYR~~~~ 513 (560)
T PF06160_consen 475 EEAEDDVETLEEKTEELIDNATLAEQLIQYANRYRSDNP 513 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCH
Confidence 444455666666666666666666777777777777775
No 136
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.45 E-value=4.6e+02 Score=36.58 Aligned_cols=23 Identities=4% Similarity=0.122 Sum_probs=11.9
Q ss_pred HHHHhHHHHhhhhhhhhhhccCC
Q 000395 567 RLKVDFAQFLHRLDTVDQCFSSN 589 (1576)
Q Consensus 567 DL~vDl~~~~~~~~~ld~~~s~~ 589 (1576)
.|..-|......|.-+=.||-||
T Consensus 1027 ~L~kaw~~VN~dFG~IFs~LLPg 1049 (1174)
T KOG0933|consen 1027 ELNKAWEKVNKDFGSIFSTLLPG 1049 (1174)
T ss_pred HHHHHHHHHhhhHHHHHHHhCCC
Confidence 34445555555555544455444
No 137
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=69.14 E-value=2.5e+02 Score=33.47 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000395 77 AAKVSLENEISALKSEI 93 (1576)
Q Consensus 77 k~K~ELEkeIsELKkqL 93 (1576)
..+.+||..-.+-+++.
T Consensus 331 qekqeleqmaeeekkr~ 347 (445)
T KOG2891|consen 331 QEKQELEQMAEEEKKRE 347 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 138
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=69.03 E-value=1.1e+02 Score=41.49 Aligned_cols=21 Identities=5% Similarity=0.075 Sum_probs=11.7
Q ss_pred CCChHHHHHHHHHHHHHHHHH
Q 000395 11 ASNPCCRVWEDKYKKSQGNRT 31 (1576)
Q Consensus 11 ~~n~c~~qLKeKleKLEe~RK 31 (1576)
..+|.+..++..+..++...+
T Consensus 148 ~aS~eL~~iR~~~~~~~~~i~ 168 (782)
T PRK00409 148 SASEKLRGIRRQLRRKKSRIR 168 (782)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 355666666666665554443
No 139
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=68.53 E-value=2e+02 Score=32.03 Aligned_cols=8 Identities=13% Similarity=0.252 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 000395 302 ALRREADD 309 (1576)
Q Consensus 302 eLRKKh~d 309 (1576)
++++++.+
T Consensus 139 ~l~~ei~~ 146 (184)
T CHL00019 139 QVRQQVFQ 146 (184)
T ss_pred HHHHHHHH
Confidence 33444433
No 140
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.36 E-value=3.5e+02 Score=34.88 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=25.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000395 288 IEGKKAEEYRLQLEALRREADDAKSMLGSEASKSE 322 (1576)
Q Consensus 288 ~EL~KarEae~tLeeLRKKh~dS~~EL~EQLeqlq 322 (1576)
.+-++.++...+..++++||+.++.+|..++....
T Consensus 382 ~teqkleelk~~f~a~q~K~a~tikeL~~El~~yr 416 (613)
T KOG0992|consen 382 LTEQKLEELKVQFTAKQEKHAETIKELEIELEEYR 416 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677888888888888888877766443
No 141
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=68.33 E-value=1.9e+02 Score=31.82 Aligned_cols=11 Identities=18% Similarity=0.299 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 000395 300 LEALRREADDA 310 (1576)
Q Consensus 300 LeeLRKKh~dS 310 (1576)
+.++++++.+-
T Consensus 129 ~~el~~ei~~l 139 (173)
T PRK13460 129 LSQLQNQIVEM 139 (173)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 142
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=68.25 E-value=3.6e+02 Score=34.85 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 113 LLDIRVTENEREIKRLKGEVEKEKIRAES 141 (1576)
Q Consensus 113 ~LQEeI~eLEeEieeLkqKLEkEKk~aee 141 (1576)
.++.....+..+..++...++.++...++
T Consensus 71 ~~~~~~~~~~~~~~~l~~~le~~~~~~~e 99 (475)
T PRK10361 71 SLQSINTSLEADLREVTTRMEAAQQHADD 99 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555444433
No 143
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=67.85 E-value=2e+02 Score=31.79 Aligned_cols=11 Identities=0% Similarity=0.296 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 000395 300 LEALRREADDA 310 (1576)
Q Consensus 300 LeeLRKKh~dS 310 (1576)
+.++++++.+.
T Consensus 131 ~~~l~~ei~~l 141 (173)
T PRK13453 131 IADINNQVSEL 141 (173)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 144
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=67.58 E-value=1.7e+02 Score=30.83 Aligned_cols=27 Identities=4% Similarity=0.015 Sum_probs=10.6
Q ss_pred HHHhhhHhhhhHHHHHHHHHHHHHHHH
Q 000395 198 AKSKLVLESSKLGDMTKKLESEKQKVS 224 (1576)
Q Consensus 198 aKRKLEgELk~AqEA~kklEeEKqkae 224 (1576)
-+.++.+.+..+++....++..+.+.+
T Consensus 37 R~~~I~~~l~~Ae~~~~ea~~~~~~~e 63 (140)
T PRK07353 37 REDYIRTNRAEAKERLAEAEKLEAQYE 63 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333333
No 145
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=67.21 E-value=2e+02 Score=31.57 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 000395 299 QLEALRREADDAK 311 (1576)
Q Consensus 299 tLeeLRKKh~dS~ 311 (1576)
.+.++++++.+-.
T Consensus 122 a~~el~~e~~~lA 134 (167)
T PRK14475 122 AAADVKAAAVDLA 134 (167)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555443
No 146
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=67.17 E-value=68 Score=38.79 Aligned_cols=66 Identities=24% Similarity=0.238 Sum_probs=45.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000395 317 EASKSEALRKKLEAEKQMLSKEREHAHLEMAKAEDQRKLAEASRKQAEEEKCHAERLSQQLEEAGQRIVELQKETNDLV 395 (1576)
Q Consensus 317 QLeqlqeiKkKLEkEK~klk~Er~dl~aE~akaqearklAe~akkKA~eEK~~adQLe~QL~Eak~KleElerq~~EL~ 395 (1576)
.++.+++--+.+|.++..++.|...+..+...+++.. ..-+.....|+.+++.++..+..++....
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekE-------------qqLv~dcv~QL~~An~qia~LseELa~k~ 226 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKE-------------QQLVLDCVKQLSEANQQIASLSEELARKT 226 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHH-------------HHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 4556666667788889999988888887777554331 11233456788888888888888777744
No 147
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=67.14 E-value=1.9e+02 Score=31.39 Aligned_cols=11 Identities=0% Similarity=0.338 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 000395 300 LEALRREADDA 310 (1576)
Q Consensus 300 LeeLRKKh~dS 310 (1576)
+.+++.++.+.
T Consensus 121 ~~~l~~~i~~l 131 (164)
T PRK14471 121 MAEIKNQVANL 131 (164)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 148
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=65.63 E-value=3.7e+02 Score=34.10 Aligned_cols=18 Identities=6% Similarity=0.246 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000395 80 VSLENEISALKSEISILQ 97 (1576)
Q Consensus 80 ~ELEkeIsELKkqLEelE 97 (1576)
.=++.++..++.++++.+
T Consensus 164 ~fl~~ql~~~~~~L~~ae 181 (498)
T TIGR03007 164 RFIDEQIKTYEKKLEAAE 181 (498)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555555555555443
No 149
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=65.45 E-value=5.5e+02 Score=36.04 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=33.7
Q ss_pred hhhhhHHHhHHhhhhcCccccchhhhHH--HHhhhhHHHHHhhhhhhhhhhcccccccccc
Q 000395 768 RKRKRLLHTVESIELLHSEDRKLHLQIE--EKLSDLHNILNKQLDKTLEEANYTVANNQDA 826 (1576)
Q Consensus 768 ~kr~r~~~~~~~~~~l~s~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1576)
++-|+++++.+-| +-++.|+=|+ +|.|+--.-+++++. +.++--|+.+++.+.
T Consensus 975 k~ak~ak~~F~~V-----K~~R~~~F~~~F~~va~~Id~IYK~Lt-nt~g~AyL~~en~~E 1029 (1141)
T KOG0018|consen 975 KEAKKAKNAFNKV-----KKKRYERFMACFEHVADNIDRIYKELT-NTEGQAYLGLENPEE 1029 (1141)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccceeecCCCCCc
Confidence 3457777777777 4567777555 566665556677777 555434777776665
No 150
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=65.04 E-value=2.5e+02 Score=31.97 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 30 RTALRQALKLFEQQLDKIQAENLSLKKA 57 (1576)
Q Consensus 30 RKeLEE~vklLEEKldqLQaE~~~L~ka 57 (1576)
.+.|+..+..++.+++.+..|+..|...
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~l 41 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQL 41 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665555
No 151
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=64.70 E-value=2.6e+02 Score=32.07 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=21.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 312 SMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEMAKAEDQ 352 (1576)
Q Consensus 312 ~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~aE~akaqea 352 (1576)
.++.+++..+...-+.+.....++....+....++..+...
T Consensus 112 ~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdK 152 (205)
T KOG1003|consen 112 EELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDK 152 (205)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555555555555555555555555455555555544433
No 152
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=64.67 E-value=2.9e+02 Score=32.45 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 113 LLDIRVTENEREIKRLKGEVEKEKIRAESEKKNAEVEKKRAAEAWKCVE 161 (1576)
Q Consensus 113 ~LQEeI~eLEeEieeLkqKLEkEKk~aeeekkkaEEekkkaEE~~kkLe 161 (1576)
.+...+..++.++..++.+...-...+.......+.-...+.+....+.
T Consensus 49 ~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~ 97 (264)
T PF06008_consen 49 PLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQ 97 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566666655555554444444443333333334443333333
No 153
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=64.63 E-value=2.3e+02 Score=31.27 Aligned_cols=10 Identities=50% Similarity=0.813 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 000395 300 LEALRREADD 309 (1576)
Q Consensus 300 LeeLRKKh~d 309 (1576)
+.++++++.+
T Consensus 132 ~~~l~~qi~~ 141 (174)
T PRK07352 132 IAQLRREAAE 141 (174)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 154
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=63.89 E-value=2.2e+02 Score=30.93 Aligned_cols=9 Identities=22% Similarity=0.446 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 000395 301 EALRREADD 309 (1576)
Q Consensus 301 eeLRKKh~d 309 (1576)
.++++++.+
T Consensus 122 ~~L~~~i~~ 130 (164)
T PRK14473 122 SELKSQIAD 130 (164)
T ss_pred HHHHHHHHH
Confidence 344444443
No 155
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=63.86 E-value=1.3e+02 Score=40.75 Aligned_cols=27 Identities=4% Similarity=-0.023 Sum_probs=19.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 000395 10 EASNPCCRVWEDKYKKSQGNRTALRQA 36 (1576)
Q Consensus 10 ~~~n~c~~qLKeKleKLEe~RKeLEE~ 36 (1576)
+...|.+..++.++..++...+...+.
T Consensus 142 d~aS~~L~~ir~~~~~~~~~i~~~l~~ 168 (771)
T TIGR01069 142 DGASEELDAIRESLKALEEEVVKRLHK 168 (771)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888877666554444
No 156
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=63.83 E-value=4.8e+02 Score=34.78 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000395 112 KLLDIRVTENEREIKRLKGEVE 133 (1576)
Q Consensus 112 K~LQEeI~eLEeEieeLkqKLE 133 (1576)
..+++++..|.+++..+..+++
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlq 104 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQ 104 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544443
No 157
>PRK00106 hypothetical protein; Provisional
Probab=63.13 E-value=4.6e+02 Score=34.35 Aligned_cols=9 Identities=33% Similarity=0.648 Sum_probs=3.6
Q ss_pred hhhhhhhhc
Q 000395 578 RLDTVDQCF 586 (1576)
Q Consensus 578 ~~~~ld~~~ 586 (1576)
.++-++.+|
T Consensus 469 ~~~gV~~~y 477 (535)
T PRK00106 469 SFDGVQNSF 477 (535)
T ss_pred cCCcHHHHH
Confidence 333344444
No 158
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=62.30 E-value=5.6e+02 Score=35.06 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHH
Q 000395 263 SKSEAVSKKLEAEK 276 (1576)
Q Consensus 263 a~ieELleeLEaER 276 (1576)
....+..+.|+++|
T Consensus 772 e~~~~~ea~leaer 785 (988)
T KOG2072|consen 772 EKLKQFEARLEAER 785 (988)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455555555
No 159
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=61.93 E-value=2.9e+02 Score=31.63 Aligned_cols=9 Identities=0% Similarity=0.202 Sum_probs=3.3
Q ss_pred hhhHhhhhH
Q 000395 201 KLVLESSKL 209 (1576)
Q Consensus 201 KLEgELk~A 209 (1576)
++.+.+..+
T Consensus 88 ~I~~~L~~A 96 (204)
T PRK09174 88 RIAQDLDQA 96 (204)
T ss_pred HHHHHHHHH
Confidence 333333333
No 160
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.74 E-value=5.6e+02 Score=34.80 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000395 15 CCRVWEDKYKKSQGN-RTALRQALKLFEQQLDKI 47 (1576)
Q Consensus 15 c~~qLKeKleKLEe~-RKeLEE~vklLEEKldqL 47 (1576)
|+.-+-+-.+.+.++ ..........++.+...+
T Consensus 537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~L 570 (717)
T PF10168_consen 537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLL 570 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433 232333344455444433
No 161
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=61.14 E-value=3.2e+02 Score=31.80 Aligned_cols=9 Identities=11% Similarity=0.206 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 000395 118 VTENEREIK 126 (1576)
Q Consensus 118 I~eLEeEie 126 (1576)
+..+...++
T Consensus 72 ~~~l~~~i~ 80 (302)
T PF10186_consen 72 LERLRERIE 80 (302)
T ss_pred HHHHHHHHH
Confidence 333333333
No 162
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=61.03 E-value=3.8e+02 Score=32.69 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 109 EEVKLLDIRVTENEREIKRLKGEV 132 (1576)
Q Consensus 109 ~E~K~LQEeI~eLEeEieeLkqKL 132 (1576)
++.+.+.+++.....++...+.++
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444443
No 163
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=60.71 E-value=2.7e+02 Score=30.80 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000395 31 TALRQALKLFEQQLDKIQAEN 51 (1576)
Q Consensus 31 KeLEE~vklLEEKldqLQaE~ 51 (1576)
.+.......+++++++++...
T Consensus 84 ~~~~~~l~~l~~el~~l~~~~ 104 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQERI 104 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444433333
No 164
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=60.28 E-value=2.4e+02 Score=30.21 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 15 CCRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLK 55 (1576)
Q Consensus 15 c~~qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~ 55 (1576)
|+-.|-...++--..+..+......+...+..++.....|.
T Consensus 39 ~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~ 79 (151)
T PF11559_consen 39 CIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLK 79 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444443333
No 165
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=58.79 E-value=4.2e+02 Score=32.42 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 109 EEVKLLDIRVTENEREIKRLKGEVE 133 (1576)
Q Consensus 109 ~E~K~LQEeI~eLEeEieeLkqKLE 133 (1576)
++....|++|..|-.++..++.++.
T Consensus 227 Ee~~rQQEEIt~LlsqivdlQ~r~k 251 (306)
T PF04849_consen 227 EENRRQQEEITSLLSQIVDLQQRCK 251 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776655543
No 166
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=58.34 E-value=2.7e+02 Score=30.12 Aligned_cols=10 Identities=20% Similarity=0.209 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 000395 300 LEALRREADD 309 (1576)
Q Consensus 300 LeeLRKKh~d 309 (1576)
+.++++++.+
T Consensus 118 ~~~l~~ei~~ 127 (159)
T PRK13461 118 EYEIKNQAVD 127 (159)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 167
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=58.05 E-value=3.4e+02 Score=31.14 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000395 113 LLDIRVTENEREIKRLKGEVEKE 135 (1576)
Q Consensus 113 ~LQEeI~eLEeEieeLkqKLEkE 135 (1576)
.|.+++.++..++..+++-++..
T Consensus 40 ~L~~e~~~L~~q~~s~Qqal~~a 62 (193)
T PF14662_consen 40 QLAEEITDLRKQLKSLQQALQKA 62 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666555444433
No 168
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=57.52 E-value=5.9e+02 Score=33.80 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=7.6
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 000395 318 ASKSEALRKKLEAEKQML 335 (1576)
Q Consensus 318 LeqlqeiKkKLEkEK~kl 335 (1576)
++.+++++..++.-+..+
T Consensus 482 ~~~~~~~~~~l~~~~~~l 499 (650)
T TIGR03185 482 ITIADKAKKTLKEFREKL 499 (650)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444333333
No 169
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=56.18 E-value=2.7e+02 Score=31.06 Aligned_cols=14 Identities=0% Similarity=0.152 Sum_probs=5.2
Q ss_pred hhhHhhhhHHHHHH
Q 000395 201 KLVLESSKLGDMTK 214 (1576)
Q Consensus 201 KLEgELk~AqEA~k 214 (1576)
++.+.+..+.+...
T Consensus 66 ~I~~~l~~Ae~~~~ 79 (181)
T PRK13454 66 TITNDLAAAEELKQ 79 (181)
T ss_pred HHHhHHHHHHHHHH
Confidence 33333333333333
No 170
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=56.10 E-value=1.8e+02 Score=34.79 Aligned_cols=110 Identities=22% Similarity=0.254 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000395 290 GKKAEEYRLQLEALRREADDAKSMLGSEASKSEALRKKLEAEKQML---SKEREHAHLEMAKAEDQR-KLAEASRKQAEE 365 (1576)
Q Consensus 290 L~KarEae~tLeeLRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~kl---k~Er~dl~aE~akaqear-klAe~akkKA~e 365 (1576)
|.|..+.+.++..|+|....---.+..--..+++.|++.+.++... ++|...+......+++.+ ++.-+...|-.
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~- 95 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES- 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH-
Confidence 4444555555555555544433333322233455555555444332 223333333333333332 11111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 000395 366 EKCHAERLSQQLEEAGQRIVELQKETNDLVSGHSVETH 403 (1576)
Q Consensus 366 EK~~adQLe~QL~Eak~KleElerq~~EL~s~k~klq~ 403 (1576)
.+.-++.||.-.+.+++-++.++..+.+...|.|.
T Consensus 96 ---qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 96 ---QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23446667777777777666666665543333333
No 171
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=55.85 E-value=3.9e+02 Score=33.93 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhhHh
Q 000395 186 LQLEALRKEAVDAKSKLVLE 205 (1576)
Q Consensus 186 kqiEkaRqElEkaKRKLEgE 205 (1576)
++++.+|..++++++.|+..
T Consensus 309 kelE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELEAN 328 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 46677777777777777643
No 172
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.84 E-value=2e+02 Score=37.72 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 117 RVTENEREIKRLKGEVEKEKIRAESEK 143 (1576)
Q Consensus 117 eI~eLEeEieeLkqKLEkEKk~aeeek 143 (1576)
+++.++..|..|..+|+.++...+..+
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666655555555554444443
No 173
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=55.60 E-value=7.4e+02 Score=34.35 Aligned_cols=34 Identities=21% Similarity=0.089 Sum_probs=21.3
Q ss_pred hhHhHHHHhHHHHhhhhhhhhhhccCCCcccccc
Q 000395 563 QELGRLKVDFAQFLHRLDTVDQCFSSNTEGTDNL 596 (1576)
Q Consensus 563 qELEDL~vDl~~~~~~~~~ld~~~s~~~~~~~~~ 596 (1576)
.|..+++.+..+...-+-..-.+.+...+|++.-
T Consensus 819 ~~q~~~rk~e~~~~~~v~e~~~~~~~~~~~~~~~ 852 (913)
T KOG0244|consen 819 DEQVNLRKDEVQALGVVPEHPVLLSGCKGGILKV 852 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444666667666666666666667766776643
No 174
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=55.59 E-value=2.8e+02 Score=29.42 Aligned_cols=16 Identities=44% Similarity=0.628 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 000395 373 LSQQLEEAGQRIVELQ 388 (1576)
Q Consensus 373 Le~QL~Eak~KleEle 388 (1576)
|..++.+++.+++++.
T Consensus 103 le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 103 LEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 175
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=55.10 E-value=3.1e+02 Score=29.73 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 000395 299 QLEALRREADDAK 311 (1576)
Q Consensus 299 tLeeLRKKh~dS~ 311 (1576)
.+.++++++.+..
T Consensus 114 a~~el~~~~~~lA 126 (159)
T PRK09173 114 AINAVRSSAVDLA 126 (159)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555443
No 176
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=55.08 E-value=98 Score=34.73 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 000395 82 LENEISALKSEIS 94 (1576)
Q Consensus 82 LEkeIsELKkqLE 94 (1576)
|+.++.+|+..+.
T Consensus 128 L~~~~~~l~~~l~ 140 (194)
T PF08614_consen 128 LEEKIKDLEEELK 140 (194)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 177
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.35 E-value=6.3e+02 Score=33.12 Aligned_cols=23 Identities=22% Similarity=0.123 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000395 111 VKLLDIRVTENEREIKRLKGEVE 133 (1576)
Q Consensus 111 ~K~LQEeI~eLEeEieeLkqKLE 133 (1576)
-+..+++|..-+++..+|++++.
T Consensus 326 erE~~EeIe~~~ke~kdLkEkv~ 348 (654)
T KOG4809|consen 326 ERERLEEIESFRKENKDLKEKVN 348 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777776666654
No 178
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=54.30 E-value=4.3e+02 Score=31.16 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 000395 299 QLEALRREADDA 310 (1576)
Q Consensus 299 tLeeLRKKh~dS 310 (1576)
.+.++++++.+-
T Consensus 117 a~~~L~~~v~~l 128 (250)
T PRK14474 117 FFKALQQQTGQQ 128 (250)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 179
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.97 E-value=3e+02 Score=35.09 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 000395 26 SQGNRTALRQA 36 (1576)
Q Consensus 26 LEe~RKeLEE~ 36 (1576)
++-.|+-.++.
T Consensus 330 leSqr~y~e~~ 340 (493)
T KOG0804|consen 330 LESQRKYYEQI 340 (493)
T ss_pred hhHHHHHHHHH
Confidence 44444444444
No 180
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=53.67 E-value=1.2e+02 Score=36.74 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 16 CRVWEDKYKKSQGNRTALRQALKLFE 41 (1576)
Q Consensus 16 ~~qLKeKleKLEe~RKeLEE~vklLE 41 (1576)
+..++..+...+++++.+..-.+.++
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666665555554
No 181
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=53.66 E-value=5e+02 Score=31.75 Aligned_cols=22 Identities=5% Similarity=0.194 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000395 15 CCRVWEDKYKKSQGNRTALRQA 36 (1576)
Q Consensus 15 c~~qLKeKleKLEe~RKeLEE~ 36 (1576)
||.+|+..+..-....+++++.
T Consensus 71 sC~EL~~~I~egr~~~~~~E~e 92 (312)
T smart00787 71 SCKELKKYISEGRDLFKEIEEE 92 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555655555544444444443
No 182
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=53.16 E-value=3.1e+02 Score=29.18 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000395 17 RVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISIL 96 (1576)
Q Consensus 17 ~qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~kalEEErlree~Er~krEeEsk~K~ELEkeIsELKkqLEel 96 (1576)
..+...+..++-++..+++.+..++...+.+.+|+..+....+ ......+....|+.++.+|+.+.+..
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e-----------~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE-----------ELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433333322 11222344446677777777666554
Q ss_pred HHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 97 QRKKGGSNAQSIEEVKLLDIRVTENEREIKRLKGEVE 133 (1576)
Q Consensus 97 Eq~~~kle~Ek~~E~K~LQEeI~eLEeEieeLkqKLE 133 (1576)
=.-+ + +|. +++.+|...+..+|+-|.
T Consensus 88 Lell---G-EK~-------E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 88 LELL---G-EKS-------EEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHh---c-chH-------HHHHHHHHHHHHHHHHHH
Confidence 2212 2 222 445556666666655554
No 183
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=52.21 E-value=4.8e+02 Score=31.10 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 000395 189 EALRKEAVDAKS 200 (1576)
Q Consensus 189 EkaRqElEkaKR 200 (1576)
+++.-.+|.++|
T Consensus 118 EQaNDdLErakR 129 (333)
T KOG1853|consen 118 EQANDDLERAKR 129 (333)
T ss_pred HHhccHHHHhhh
Confidence 333334444333
No 184
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=52.13 E-value=5.8e+02 Score=32.10 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=7.6
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 000395 223 VSKEKKRANNEGKKAEEY 240 (1576)
Q Consensus 223 aeeekKkAE~E~keAEe~ 240 (1576)
++.+....+-+..+++.|
T Consensus 264 lEt~q~~leqeva~le~y 281 (499)
T COG4372 264 LETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 185
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=50.92 E-value=6.9e+02 Score=32.57 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 109 EEVKLLDIRVTENEREIKRLKGEV 132 (1576)
Q Consensus 109 ~E~K~LQEeI~eLEeEieeLkqKL 132 (1576)
++...+++++.+|..++..++.|+
T Consensus 226 ~el~~q~Ee~skLlsql~d~qkk~ 249 (596)
T KOG4360|consen 226 KELSRQQEENSKLLSQLVDLQKKI 249 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 556677788888888888665554
No 186
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=50.46 E-value=7.2e+02 Score=32.64 Aligned_cols=11 Identities=9% Similarity=0.175 Sum_probs=4.4
Q ss_pred HHhhhhhhhhh
Q 000395 574 QFLHRLDTVDQ 584 (1576)
Q Consensus 574 ~~~~~~~~ld~ 584 (1576)
+++.++-.||.
T Consensus 479 rLYAAIi~l~~ 489 (591)
T KOG2412|consen 479 RLYAAIIQLDI 489 (591)
T ss_pred HHHHHHHHhcc
Confidence 33344444443
No 187
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=49.99 E-value=8.6e+02 Score=33.40 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcc
Q 000395 481 LAADHLSQQLEEARGRIDELQKQIHDLHSSRKSFDA 516 (1576)
Q Consensus 481 ~d~d~LrEQLEEE~EaK~eLeRQLskl~s~RkK~Et 516 (1576)
++...++-++.|-+....+++.++..++..+..+++
T Consensus 617 d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ 652 (769)
T PF05911_consen 617 DQLESLKNQLKESEQKLEELQSELESAKESNSLAET 652 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777766555555553
No 188
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=49.70 E-value=1e+03 Score=34.12 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=10.9
Q ss_pred hhHhHHHHhHHHHhhhhhhhh
Q 000395 563 QELGRLKVDFAQFLHRLDTVD 583 (1576)
Q Consensus 563 qELEDL~vDl~~~~~~~~~ld 583 (1576)
.|+-.++++-.|+....+.+.
T Consensus 404 ~~l~~L~~~q~QL~~~~~~l~ 424 (1109)
T PRK10929 404 LELTKLKVANSQLEDALKEVN 424 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444
No 189
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=49.18 E-value=4.7e+02 Score=30.17 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=14.2
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000395 203 VLESSKLGDMTKKLESEKQKVSKEKKRANNEGKK 236 (1576)
Q Consensus 203 EgELk~AqEA~kklEeEKqkaeeekKkAE~E~ke 236 (1576)
+.+++...-..+.+...-+++.......+.+++.
T Consensus 115 eEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ 148 (205)
T KOG1003|consen 115 EEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKE 148 (205)
T ss_pred HHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344444444444444444444444444444444
No 190
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=48.58 E-value=7.3e+02 Score=32.18 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 000395 298 LQLEALRREADDAK 311 (1576)
Q Consensus 298 ~tLeeLRKKh~dS~ 311 (1576)
.+|..|++++.+..
T Consensus 147 e~l~~f~~~v~~~~ 160 (475)
T PRK10361 147 EQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 46666666666543
No 191
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.26 E-value=9.1e+02 Score=33.21 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 000395 79 KVSLENEISALKSEIS 94 (1576)
Q Consensus 79 K~ELEkeIsELKkqLE 94 (1576)
..++.++...|+.++.
T Consensus 701 hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 701 HSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3444555555554443
No 192
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=48.08 E-value=5.1e+02 Score=30.24 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=7.7
Q ss_pred ccccccCCCCCcchhh
Q 000395 398 HSVETHGCKPDTDAGF 413 (1576)
Q Consensus 398 k~klq~E~~~e~~~~l 413 (1576)
+-.+...+.|+...++
T Consensus 206 ~v~~~~~vdp~ligGi 221 (246)
T TIGR03321 206 EIRLRFQTEPDLIGGI 221 (246)
T ss_pred CeeEEeeeCchhcCce
Confidence 3344555445555553
No 193
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=47.62 E-value=7.4e+02 Score=31.97 Aligned_cols=16 Identities=6% Similarity=0.310 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 000395 111 VKLLDIRVTENEREIK 126 (1576)
Q Consensus 111 ~K~LQEeI~eLEeEie 126 (1576)
.+.|++-+....+.++
T Consensus 392 lqnLqe~la~tqk~Lq 407 (527)
T PF15066_consen 392 LQNLQEALANTQKHLQ 407 (527)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 194
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=47.13 E-value=3.4e+02 Score=31.83 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 15 CCRVWEDKYKKSQGNRTALRQALKLFEQQ 43 (1576)
Q Consensus 15 c~~qLKeKleKLEe~RKeLEE~vklLEEK 43 (1576)
|+..++.+...+++.+..+...+..++..
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~e 30 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLENE 30 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777776666665555543
No 195
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=46.45 E-value=6.8e+02 Score=31.21 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 35 QALKLFEQQLDKIQAENLSLKKACQ 59 (1576)
Q Consensus 35 E~vklLEEKldqLQaE~~~L~kalE 59 (1576)
....-+++++.++..+....+..++
T Consensus 171 ~~~~fl~~ql~~~~~~l~~ae~~l~ 195 (444)
T TIGR03017 171 KAALWFVQQIAALREDLARAQSKLS 195 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356666666665555555555544
No 196
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=46.09 E-value=2.1e+02 Score=32.33 Aligned_cols=48 Identities=31% Similarity=0.396 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 81 SLENEISALKSEISILQRKKGGSNAQSIEEVKLLDIRVTENEREIKRLKGEVE 133 (1576)
Q Consensus 81 ELEkeIsELKkqLEelEq~~~kle~Ek~~E~K~LQEeI~eLEeEieeLkqKLE 133 (1576)
+++..+.+|+..++....... ...+...+.+++.++.+++..++.+++
T Consensus 80 ~~~~~i~~l~~~i~~~~~~r~-----~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 80 ELEKKIEELEEKIEEAKKGRE-----ESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHhccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554444322111 124455666677777777776666665
No 197
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=45.86 E-value=7.4e+02 Score=31.48 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000395 113 LLDIRVTENEREIKRLKGEVE 133 (1576)
Q Consensus 113 ~LQEeI~eLEeEieeLkqKLE 133 (1576)
.+..++.+++.++..+..++.
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~ 271 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYT 271 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhc
Confidence 455667777777777766554
No 198
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=45.74 E-value=5.1e+02 Score=29.60 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 000395 82 LENEISALKSEISILQRKKG 101 (1576)
Q Consensus 82 LEkeIsELKkqLEelEq~~~ 101 (1576)
+++++.+|+-+.+.++++..
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~ 117 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFE 117 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 199
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=45.37 E-value=5.2e+02 Score=29.56 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000395 110 EVKLLDIRVTENEREIKRLKGE 131 (1576)
Q Consensus 110 E~K~LQEeI~eLEeEieeLkqK 131 (1576)
+++.|.+.+...+.+...|+.+
T Consensus 56 eN~~L~epL~~a~~e~~eL~k~ 77 (201)
T PF13851_consen 56 ENKRLSEPLKKAEEEVEELRKQ 77 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444555555555544333
No 200
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=44.99 E-value=5e+02 Score=30.63 Aligned_cols=17 Identities=0% Similarity=0.006 Sum_probs=6.7
Q ss_pred HHHhhhHhhhhHHHHHH
Q 000395 198 AKSKLVLESSKLGDMTK 214 (1576)
Q Consensus 198 aKRKLEgELk~AqEA~k 214 (1576)
-+.+..+.+..+.+...
T Consensus 37 R~~~I~~~l~~Ae~~~~ 53 (250)
T PRK14474 37 RQQRIANRWQDAEQRQQ 53 (250)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444433333
No 201
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.32 E-value=1.9e+02 Score=37.89 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 20 EDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKA 57 (1576)
Q Consensus 20 KeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~ka 57 (1576)
.+.+.++++....|+..+..|+..+.+++.++..|...
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~ 458 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESE 458 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444333333
No 202
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=43.85 E-value=7.5e+02 Score=30.94 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 299 QLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEMAKAEDQR 353 (1576)
Q Consensus 299 tLeeLRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~aE~akaqear 353 (1576)
+...++..+...-..+..-+...+.++.+++..+.++..|..+....+..++++.
T Consensus 234 ~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai 288 (384)
T PF03148_consen 234 TANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAI 288 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555667777777777777777766666666555553
No 203
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.39 E-value=2.1e+02 Score=33.33 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 35 QALKLFEQQLDKIQAENLSLKKAC 58 (1576)
Q Consensus 35 E~vklLEEKldqLQaE~~~L~kal 58 (1576)
+....+.+|++.+++|+..|-+.+
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~el 158 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKEL 158 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555554444443
No 204
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=42.64 E-value=4.4e+02 Score=27.96 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=6.6
Q ss_pred hhhHhhhhHHHHHHHHH
Q 000395 201 KLVLESSKLGDMTKKLE 217 (1576)
Q Consensus 201 KLEgELk~AqEA~kklE 217 (1576)
...+.+..+++.....+
T Consensus 30 ~I~~~l~~A~~~~~ea~ 46 (147)
T TIGR01144 30 KIADGLASAERAKKEAA 46 (147)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334443333333
No 205
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=42.36 E-value=1e+03 Score=32.22 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 000395 16 CRVWEDKYKKSQGNRTALRQALKLFEQQ---LDKIQAENLSLKKAC 58 (1576)
Q Consensus 16 ~~qLKeKleKLEe~RKeLEE~vklLEEK---ldqLQaE~~~L~kal 58 (1576)
..++.+++...-+....+.........+ ...+..+...|...+
T Consensus 229 ~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl 274 (698)
T KOG0978|consen 229 VIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSL 274 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHH
Confidence 4566666666555444444442222222 224555555555543
No 206
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.22 E-value=2.6e+02 Score=31.60 Aligned_cols=25 Identities=8% Similarity=0.315 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 35 QALKLFEQQLDKIQAENLSLKKACQ 59 (1576)
Q Consensus 35 E~vklLEEKldqLQaE~~~L~kalE 59 (1576)
.....|+.++..+..+...+...++
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIE 93 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 207
>PF05917 DUF874: Helicobacter pylori protein of unknown function (DUF874); InterPro: IPR008592 This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.
Probab=41.60 E-value=1.6e+02 Score=35.34 Aligned_cols=20 Identities=5% Similarity=-0.147 Sum_probs=9.2
Q ss_pred CChHHHHHHHHHHHHHHHHH
Q 000395 12 SNPCCRVWEDKYKKSQGNRT 31 (1576)
Q Consensus 12 ~n~c~~qLKeKleKLEe~RK 31 (1576)
-|...+-++-+..+.=++.+
T Consensus 14 knte~A~tk~nke~~fKq~~ 33 (398)
T PF05917_consen 14 KNTEMANTKANKETHFKQVS 33 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 34555555544444433333
No 208
>PRK12472 hypothetical protein; Provisional
Probab=41.41 E-value=5.5e+02 Score=33.26 Aligned_cols=9 Identities=22% Similarity=0.494 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 000395 268 VSKKLEAEK 276 (1576)
Q Consensus 268 LleeLEaER 276 (1576)
+..++++++
T Consensus 274 a~~~~~~a~ 282 (508)
T PRK12472 274 AATQLDTAK 282 (508)
T ss_pred HHHHHHHHH
Confidence 333444433
No 209
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=41.15 E-value=7.9e+02 Score=30.46 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 000395 167 AEEERRRA 174 (1576)
Q Consensus 167 ~EEEK~ka 174 (1576)
.|+++..+
T Consensus 123 LE~dRe~h 130 (561)
T KOG1103|consen 123 LEADREAH 130 (561)
T ss_pred HHHHHHHH
Confidence 33443333
No 210
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=41.10 E-value=3.8e+02 Score=37.67 Aligned_cols=7 Identities=43% Similarity=0.577 Sum_probs=2.8
Q ss_pred Ccccccc
Q 000395 598 NVKVRDT 604 (1576)
Q Consensus 598 ~~~~~~~ 604 (1576)
++|.+|.
T Consensus 758 ~~~~~~~ 764 (1021)
T PTZ00266 758 STKYRDH 764 (1021)
T ss_pred ccccccc
Confidence 3344443
No 211
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=40.74 E-value=6.4e+02 Score=34.35 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhHHHHHHH
Q 000395 3 TDISAKPEASNPCCRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSL 82 (1576)
Q Consensus 3 ~~~~~~~~~~n~c~~qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~kalEEErlree~Er~krEeEsk~K~EL 82 (1576)
|.-+..+..-|-++..|+--..-++.+.++.......|+.++.++-+.++..++. -.+...... .+..+..+.|...
T Consensus 416 ~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~E--nk~~~~~~~-ekd~~l~~~kq~~ 492 (861)
T PF15254_consen 416 AEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEE--NKRLRKMFQ-EKDQELLENKQQF 492 (861)
T ss_pred hcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHhhHHHH
Q ss_pred HHHHHHHHHHHHHH--HHhhcCCCccc-HHHHHHHHHHHHHHHHHHHHHHH
Q 000395 83 ENEISALKSEISIL--QRKKGGSNAQS-IEEVKLLDIRVTENEREIKRLKG 130 (1576)
Q Consensus 83 EkeIsELKkqLEel--Eq~~~kle~Ek-~~E~K~LQEeI~eLEeEieeLkq 130 (1576)
+.+...++-++++. +.+.-+...+. ..|+.-|--.++..+++|.+|++
T Consensus 493 d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 493 DIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRE 543 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHH
No 212
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=40.55 E-value=6.7e+02 Score=29.44 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000395 37 LKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISIL 96 (1576)
Q Consensus 37 vklLEEKldqLQaE~~~L~kalEEErlree~Er~krEeEsk~K~ELEkeIsELKkqLEel 96 (1576)
+..++.++..+..+...|.+...........-....+.-...-..|...|..+...+.++
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l 106 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQEL 106 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555544332111111111111111333335555666666666555
No 213
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=40.32 E-value=4.8e+02 Score=27.76 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=33.0
Q ss_pred HHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000395 198 AKSKLVLESSKLGDMTKKLESEKQKVSKEKKRANNEGKKAEEYIIQLEALR 248 (1576)
Q Consensus 198 aKRKLEgELk~AqEA~kklEeEKqkaeeekKkAE~E~keAEe~k~qaeqLr 248 (1576)
.-|++++|+..+++....++.++..+..+.-+.-.+..+......++..|+
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~ 74 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELE 74 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888877777666555555444444444444443
No 214
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=40.13 E-value=7.2e+02 Score=29.71 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 18 VWEDKYKKSQGNRTALRQALKLFEQ 42 (1576)
Q Consensus 18 qLKeKleKLEe~RKeLEE~vklLEE 42 (1576)
-|+.-..+.......+++.....++
T Consensus 17 ywk~l~~~ykq~f~~~reEl~EFQe 41 (333)
T KOG1853|consen 17 YWKLLHHEYKQHFLQMREELNEFQE 41 (333)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 3444444443333344444333333
No 215
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=39.20 E-value=8.2e+02 Score=30.09 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 111 VKLLDIRVTENEREIKRLKGEVEKEK 136 (1576)
Q Consensus 111 ~K~LQEeI~eLEeEieeLkqKLEkEK 136 (1576)
...|+.++..+..+...+...++.|+
T Consensus 108 tn~L~rkl~qLr~EK~~lE~~Le~Eq 133 (310)
T PF09755_consen 108 TNDLSRKLNQLRQEKVELENQLEQEQ 133 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34555555555555555555555544
No 216
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=39.12 E-value=6.7e+02 Score=29.07 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000395 299 QLEALRREADDAKSMLGS 316 (1576)
Q Consensus 299 tLeeLRKKh~dS~~EL~E 316 (1576)
.++.++.+|..-...+..
T Consensus 151 ei~~v~~~~~~e~~aLqa 168 (207)
T PF05010_consen 151 EIAQVRSKHQAELLALQA 168 (207)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 344444444444333333
No 217
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=38.34 E-value=6.6e+02 Score=28.73 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000395 115 DIRVTENEREIKRLKGEVEKEKIRAESEKKNAEVEKKRAAEAWKCVEAEKGKAEEERRRANIEGKKAEEYKLQLEALRKE 194 (1576)
Q Consensus 115 QEeI~eLEeEieeLkqKLEkEKk~aeeekkkaEEekkkaEE~~kkLe~EK~k~EEEK~ka~eelKKveELekqiEkaRqE 194 (1576)
+.-+..|+.++.+...-++.|......-..++........+....+..++...+.-+.....-..-....+.++..-.+-
T Consensus 66 q~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qL 145 (188)
T PF05335_consen 66 QQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQL 145 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhHhhhhHHHHHHHHHHHHHHHHHH
Q 000395 195 AVDAKSKLVLESSKLGDMTKKLESEKQKVSKE 226 (1576)
Q Consensus 195 lEkaKRKLEgELk~AqEA~kklEeEKqkaeee 226 (1576)
++.++++++.=.+...+++.+++.-+.-+.+.
T Consensus 146 LeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA 177 (188)
T PF05335_consen 146 LEAAKRRVEELQRQLQAARADYEKTKKAAYKA 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 218
>PRK12472 hypothetical protein; Provisional
Probab=38.33 E-value=7.9e+02 Score=31.93 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhhHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000395 271 KLEAEKQMVCKERQRANIEGKKA--EEYRLQLEALRREADDAKSMLGSEAS 319 (1576)
Q Consensus 271 eLEaERq~AkaEKqRaD~EL~Ka--rEae~tLeeLRKKh~dS~~EL~EQLe 319 (1576)
.+|..+.++.++-.++|..|..+ .++....++.+++......++..+++
T Consensus 229 ~~e~~~~~a~~~l~~adk~l~~a~~d~~~~~a~~~~~~~~~~~~~a~~~~~ 279 (508)
T PRK12472 229 KLERAKARADAELKRADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLD 279 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555444333 22233344444444444444444443
No 219
>PRK10884 SH3 domain-containing protein; Provisional
Probab=38.22 E-value=3.1e+02 Score=31.61 Aligned_cols=6 Identities=0% Similarity=0.063 Sum_probs=2.2
Q ss_pred HHHHHH
Q 000395 22 KYKKSQ 27 (1576)
Q Consensus 22 KleKLE 27 (1576)
.+.+++
T Consensus 94 rlp~le 99 (206)
T PRK10884 94 RVPDLE 99 (206)
T ss_pred HHHHHH
Confidence 333333
No 220
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=37.95 E-value=8.1e+02 Score=29.68 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000395 118 VTENEREIKRLKGEVEKEK 136 (1576)
Q Consensus 118 I~eLEeEieeLkqKLEkEK 136 (1576)
+..++.-+...+++.+.|+
T Consensus 41 leSlEAaLqKQKqK~e~ek 59 (307)
T PF10481_consen 41 LESLEAALQKQKQKVEEEK 59 (307)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445555554445554444
No 221
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=37.80 E-value=9.7e+02 Score=30.55 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 000395 81 SLENEISALKSEISIL 96 (1576)
Q Consensus 81 ELEkeIsELKkqLEel 96 (1576)
+.|.++.+|+++..++
T Consensus 52 ~~E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 52 EKELELNRLQEENTQL 67 (459)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566666555554
No 222
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=37.48 E-value=9.6e+02 Score=30.38 Aligned_cols=9 Identities=11% Similarity=0.291 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 000395 155 EAWKCVEAE 163 (1576)
Q Consensus 155 E~~kkLe~E 163 (1576)
+.+.++...
T Consensus 62 ~q~~~~q~q 70 (387)
T PRK09510 62 EQYNRQQQQ 70 (387)
T ss_pred HHHHHHHHh
Confidence 344444433
No 223
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=37.35 E-value=1.2e+03 Score=31.34 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000395 79 KVSLENEISALKSEISIL 96 (1576)
Q Consensus 79 K~ELEkeIsELKkqLEel 96 (1576)
|-+|..++++||=++..+
T Consensus 176 KlDLmaevSeLKLkltal 193 (861)
T KOG1899|consen 176 KLDLMAEVSELKLKLTAL 193 (861)
T ss_pred HhHHHHHHHHhHHHHHHH
Confidence 444555555555444444
No 224
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.16 E-value=3.2e+02 Score=33.45 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhHHHHHHHHHHHH
Q 000395 242 IQLEALRKEAGDAKLMLVSEASKSEAVSKKLEAE 275 (1576)
Q Consensus 242 ~qaeqLrkEaeQKKlr~eEeQa~ieELleeLEaE 275 (1576)
.++..++.++..++-.+++.+...+++.+.+..+
T Consensus 15 ~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~ 48 (344)
T PF12777_consen 15 EQVEEMQEELEEKQPELEEKQKEAEELLEEIEKE 48 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433334344444444444433
No 225
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.99 E-value=4.7e+02 Score=28.66 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 26 SQGNRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISILQR 98 (1576)
Q Consensus 26 LEe~RKeLEE~vklLEEKldqLQaE~~~L~kalEEErlree~Er~krEeEsk~K~ELEkeIsELKkqLEelEq 98 (1576)
+......|++.+..+......+.++...|....- -++......+++.++..|+.+++.+..
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t------------~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPT------------NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444444443321 122233344566677777777776654
No 226
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=36.90 E-value=1e+03 Score=30.51 Aligned_cols=24 Identities=8% Similarity=0.441 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 26 SQGNRTALRQALKLFEQQLDKIQA 49 (1576)
Q Consensus 26 LEe~RKeLEE~vklLEEKldqLQa 49 (1576)
+++.|..+..++..|+.+.+++..
T Consensus 213 mee~r~di~~kv~flerkv~eled 236 (502)
T KOG0982|consen 213 MEEERIDIERKVRFLERKVQELED 236 (502)
T ss_pred hhchhhhHHHHHHHHHHHHHHhhc
Confidence 666777777777777777765543
No 227
>PF13514 AAA_27: AAA domain
Probab=36.87 E-value=1.5e+03 Score=32.33 Aligned_cols=30 Identities=13% Similarity=0.071 Sum_probs=22.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 000395 7 AKPEASNPCCRVWEDKYKKSQGNRTALRQA 36 (1576)
Q Consensus 7 ~~~~~~n~c~~qLKeKleKLEe~RKeLEE~ 36 (1576)
.||-+.+|-+.+....|..+++..+.....
T Consensus 143 fkprg~~~~in~~l~~l~e~~~~l~~~~~~ 172 (1111)
T PF13514_consen 143 FKPRGRKPEINQALKELKELERELREAEVR 172 (1111)
T ss_pred hCCCCCChHHHHHHHHHHHHHHHHHHHhcc
Confidence 466678888888888888877766655544
No 228
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=36.20 E-value=7.2e+02 Score=28.55 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000395 323 ALRKKLEAEKQMLSKERE 340 (1576)
Q Consensus 323 eiKkKLEkEK~klk~Er~ 340 (1576)
++++.|+.++.++..+..
T Consensus 153 ~Ae~~I~~ek~~A~~el~ 170 (204)
T PRK09174 153 EAEARIAAIKAKAMADVG 170 (204)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555544443
No 229
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.12 E-value=3e+02 Score=35.37 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 21 DKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKA 57 (1576)
Q Consensus 21 eKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~ka 57 (1576)
+.+..+-.+.++++.+...+..++..+.+|+++|.+.
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555555555555555555555443
No 230
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=35.64 E-value=7.7e+02 Score=28.77 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=12.1
Q ss_pred HHHHHHhhhHhhhhHHHHHHHHHHHHH
Q 000395 195 AVDAKSKLVLESSKLGDMTKKLESEKQ 221 (1576)
Q Consensus 195 lEkaKRKLEgELk~AqEA~kklEeEKq 221 (1576)
+++.+.+..+.+..+++....++..+.
T Consensus 34 l~~R~~~I~~~l~~Ae~~~~eA~~~~~ 60 (246)
T TIGR03321 34 MDAREKKIAGELADADTKKREAEQERR 60 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444454455444444433333
No 231
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=35.33 E-value=7.7e+02 Score=28.62 Aligned_cols=39 Identities=26% Similarity=0.443 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 116 IRVTENEREIKRLKGEVEKEKIRAESEKKNAEVEKKRAA 154 (1576)
Q Consensus 116 EeI~eLEeEieeLkqKLEkEKk~aeeekkkaEEekkkaE 154 (1576)
..+..+..++.+|+..|..|+.+.+......+.++....
T Consensus 131 ~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~ 169 (202)
T PF06818_consen 131 DELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQ 169 (202)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 346667778888888887777666666555555555433
No 232
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=35.29 E-value=1.1e+03 Score=31.03 Aligned_cols=97 Identities=14% Similarity=0.215 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccH
Q 000395 29 NRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISILQRKKGGSNAQSI 108 (1576)
Q Consensus 29 ~RKeLEE~vklLEEKldqLQaE~~~L~kalEEErlree~Er~krEeEsk~K~ELEkeIsELKkqLEelEq~~~kle~Ek~ 108 (1576)
-+.-++.++..|..+++....+.......++.-..+.... .+.+..++.++..+...+..++..+.
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~a-------E~ek~~l~eeL~~a~~~i~~LqDEL~------- 479 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESA-------EKEKESLEEELKEANQNISRLQDELE------- 479 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 4556666666666666655544444444333211111111 11222333444444444443332221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 109 EEVKLLDIRVTENEREIKRLKGEVEKEKIRA 139 (1576)
Q Consensus 109 ~E~K~LQEeI~eLEeEieeLkqKLEkEKk~a 139 (1576)
+-.+.-.+++..+-+.+..+.+++.+.+...
T Consensus 480 TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI 510 (518)
T PF10212_consen 480 TTRRNYEEQLSMMSEHLASMNEQLAKQREEI 510 (518)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555777778888888888777654433
No 233
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=34.11 E-value=7e+02 Score=27.77 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 000395 300 LEALRREADDAK 311 (1576)
Q Consensus 300 LeeLRKKh~dS~ 311 (1576)
+.++++++.+..
T Consensus 140 ~~~l~~~i~~lA 151 (184)
T PRK13455 140 VKAVRDRAVSVA 151 (184)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 234
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=33.03 E-value=1.8e+03 Score=32.21 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=15.4
Q ss_pred HhHHHHhHHHHhhhhhhhhhhc
Q 000395 565 LGRLKVDFAQFLHRLDTVDQCF 586 (1576)
Q Consensus 565 LEDL~vDl~~~~~~~~~ld~~~ 586 (1576)
.+-+..|+++...+||.-+--|
T Consensus 1100 t~~~~~DL~ky~~aLD~Aim~f 1121 (1294)
T KOG0962|consen 1100 TELSNKDLDKYYKALDKAIMQF 1121 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888766555
No 235
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.45 E-value=4.5e+02 Score=30.29 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 000395 81 SLENEISALKSEISIL 96 (1576)
Q Consensus 81 ELEkeIsELKkqLEel 96 (1576)
++|+++.+|+.++...
T Consensus 97 ~le~el~~l~~~l~~~ 112 (206)
T PRK10884 97 DLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 236
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=31.73 E-value=1.5e+03 Score=30.85 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000395 329 EAEKQMLSKEREHAHLEMA 347 (1576)
Q Consensus 329 EkEK~klk~Er~dl~aE~a 347 (1576)
..+.+.+..|++.+.+++.
T Consensus 477 ~~ELqqLReERdRl~aeLq 495 (739)
T PF07111_consen 477 SLELQQLREERDRLDAELQ 495 (739)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777665
No 237
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=31.71 E-value=6.5e+02 Score=31.87 Aligned_cols=80 Identities=23% Similarity=0.218 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 000395 18 VWEDKYKKSQGNRTALRQALKLFEQQLDKI----QAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEI 93 (1576)
Q Consensus 18 qLKeKleKLEe~RKeLEE~vklLEEKldqL----QaE~~~L~kalEEErlree~Er~krEeEsk~K~ELEkeIsELKkqL 93 (1576)
.....+.++-++..++++....|++.++.+ +.+..-+...++|++.+.+. -.++-.+...-.+.++..||.++
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~er---LEeqlNd~~elHq~Ei~~LKqeL 285 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYER---LEEQLNDLTELHQNEIYNLKQEL 285 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666666644 33555666666666533211 11111333333466777777777
Q ss_pred HHHHHhh
Q 000395 94 SILQRKK 100 (1576)
Q Consensus 94 EelEq~~ 100 (1576)
...|.+.
T Consensus 286 a~~EEK~ 292 (395)
T PF10267_consen 286 ASMEEKM 292 (395)
T ss_pred HhHHHHH
Confidence 6655433
No 238
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=31.18 E-value=2.5e+02 Score=31.54 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 16 CRVWEDKYKKSQGNRTALRQALKLFEQQLDKI 47 (1576)
Q Consensus 16 ~~qLKeKleKLEe~RKeLEE~vklLEEKldqL 47 (1576)
+.+|++.+..+-+.+-.+.+++..+..++.++
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~~~~~l~~l 107 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVELNDELQEL 107 (194)
T ss_dssp --------------------------------
T ss_pred cccccccccccccccccccccccccccccchh
Confidence 33444444444444444444444444444433
No 239
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=30.51 E-value=1.3e+03 Score=29.90 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 000395 86 ISALKSEISILQR 98 (1576)
Q Consensus 86 IsELKkqLEelEq 98 (1576)
+..|+.++..++.
T Consensus 157 ~~sL~ekl~lld~ 169 (511)
T PF09787_consen 157 PRSLQEKLSLLDE 169 (511)
T ss_pred HhhHHHHHHHHHH
Confidence 3555555544443
No 240
>PTZ00491 major vault protein; Provisional
Probab=30.51 E-value=1.2e+03 Score=32.18 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000395 176 IEGKKAEEYKLQLEALRKEAVDAKSKLVLESSKLGDMTKKLESEKQKVSKEKKRANNEGKKAEEYIIQLEALRKEAGDAK 255 (1576)
Q Consensus 176 eelKKveELekqiEkaRqElEkaKRKLEgELk~AqEA~kklEeEKqkaeeekKkAE~E~keAEe~k~qaeqLrkEaeQKK 255 (1576)
.+...-.+.+..++.+|-.+|..+-.=+.+...++...-+++++-...+..-+.+-.-...|+..+.+.+.- +++.+
T Consensus 664 qEa~A~h~a~~~eQea~g~Lerqk~~d~~~aE~~r~~llel~a~s~aves~g~a~a~a~a~aea~~ie~e~~---v~~a~ 740 (850)
T PTZ00491 664 QEAAARHQAELLEQEARGRLERQKMHDKAKAEEQRTKLLELQAESAAVESSGQSRAEALAEAEARLIEAEAE---VEQAE 740 (850)
T ss_pred HHHHHHHHHHHHHHHhhchhHHHhhhhHHHHHHHHHHHHHHHhHHHHHhhcchHHHHHHHHHHHHhhhhhhH---HHHHH
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHH-HHHHHHhhhHHhHHHHHH-HHHHHHHHHHHH
Q 000395 256 LMLVSEASKSEAVSKKLEAEKQM-VCKERQRANIEGKKAEEY-RLQLEALRREAD 308 (1576)
Q Consensus 256 lr~eEeQa~ieELleeLEaERq~-AkaEKqRaD~EL~KarEa-e~tLeeLRKKh~ 308 (1576)
+|++.++=..+-.++.+...+.. ..=.+++.+.++.++++. ......|++-++
T Consensus 741 lra~a~~i~~~ael~~~~~~~~~e~~~~~~~~~le~~k~~~la~ie~~kf~~~v~ 795 (850)
T PTZ00491 741 LRAKALRIEAEAELEKLRKRQELELEYEQAQNELEIAKAKELADIEATKFERIVE 795 (850)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
No 241
>KOG1890 consensus Phosphoinositide phosphatase SAC1 [Lipid transport and metabolism]
Probab=30.09 E-value=36 Score=43.83 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=71.8
Q ss_pred cchhhhhHHHHHHHhhccceecccccch---------hhHHhhhccCccchhHHHHHHHHhhcccccccccCccccchhh
Q 000395 1417 LCHVTDVLSLVELLSCIMSWDWTLSTVV---------PGLLRMLELPIAESFTFAIVILLGQIGRLGVAACGCEDKNVEN 1487 (1576)
Q Consensus 1417 lc~~~di~slvEL~~~~mswewt~~~~v---------~~ll~~l~~~~~~~~~~ai~~llgqlgr~gv~~~gye~~~v~~ 1487 (1576)
+=-+.-+++.++=.+--|+|.|.+..=| +--..-|++.-+-+.|.+.+|+..||-++||- |-+.+--+.
T Consensus 390 FenvqtLida~~~~~~~mgfcWvD~~Gvic~QkgvfRvNCmDCLDRTNvVQ~aI~~~V~eqQl~kLGi~--pP~~p~Pe~ 467 (949)
T KOG1890|consen 390 FENVQTLIDAMEETLKTMGFCWVDKTGVICSQKGVFRVNCMDCLDRTNVVQGAISLFVVEQQLQKLGIF--PPLCPPPEV 467 (949)
T ss_pred hhhHHHHHHHHHHHHhhceeEEecccceeecccceEEeehhhhhchhhHHHHHHHHHHHHHHHHHhCCC--CCCCCChHH
Confidence 3344567888999999999999986543 34577899999999999999999999999997 333333344
Q ss_pred hhhHHHHHhhccccccccchHHHHHHHHHHh
Q 000395 1488 LSNTLSAFLWHETTTRAGLPLQIAIVTALLG 1518 (1576)
Q Consensus 1488 lr~~l~~~l~~~~t~~~~~~~q~~~~~all~ 1518 (1576)
|. .-+-.||-++ --.++-|.|--+||=|
T Consensus 468 l~-~~~q~mWAnN--GD~ISrQYAGTaALKG 495 (949)
T KOG1890|consen 468 LV-QTMQTMWANN--GDVISRQYAGTAALKG 495 (949)
T ss_pred HH-HHHHHHhhcC--CceeehhhcchhhhcC
Confidence 43 3455677544 4567788888888765
No 242
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.87 E-value=8.3e+02 Score=29.96 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 000395 372 RLSQQLEEAGQRIVELQKETNDL 394 (1576)
Q Consensus 372 QLe~QL~Eak~KleElerq~~EL 394 (1576)
....+|.++.-.+++....++.+
T Consensus 79 ~a~~~L~~a~P~L~~A~~al~~l 101 (344)
T PF12777_consen 79 EAEEELAEAEPALEEAQEALKSL 101 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455555555555555555544
No 243
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.58 E-value=1.6e+03 Score=30.53 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 77 AAKVSLENEISALKSEISILQRKKGGSNAQS---IEEVKLLDIRVTENEREIKRLKGEVEKE 135 (1576)
Q Consensus 77 k~K~ELEkeIsELKkqLEelEq~~~kle~Ek---~~E~K~LQEeI~eLEeEieeLkqKLEkE 135 (1576)
..+.+++..+.++.......+.+...++++. ..+.+.+.-.+.++++++.+.-+++..+
T Consensus 144 el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~ 205 (716)
T KOG4593|consen 144 ELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEE 205 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555555554454444333 1113344444555555555444444433
No 244
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=28.72 E-value=9.2e+02 Score=27.53 Aligned_cols=21 Identities=43% Similarity=0.472 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 000395 79 KVSLENEISALKSEISILQRK 99 (1576)
Q Consensus 79 K~ELEkeIsELKkqLEelEq~ 99 (1576)
..+++..+.+|+..+.+++..
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQ 146 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 445566666666666555443
No 245
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=28.50 E-value=8.1e+02 Score=28.24 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000395 366 EKCHAERLSQQLEEAGQRIVELQKETNDLVS 396 (1576)
Q Consensus 366 EK~~adQLe~QL~Eak~KleElerq~~EL~s 396 (1576)
.+..+..|..+-..++.+++.+++++..|..
T Consensus 152 ~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 152 ARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335667888888888888888888888764
No 246
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.44 E-value=1.5e+03 Score=29.77 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=20.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 000395 11 ASNPCCRVWEDKYKKSQGNRTALRQ-------ALKLFEQQLDKIQAEN 51 (1576)
Q Consensus 11 ~~n~c~~qLKeKleKLEe~RKeLEE-------~vklLEEKldqLQaE~ 51 (1576)
+.|.|.....+-+--.....-.++- ++...+..+.++++|.
T Consensus 43 ~~~~~~~~~~e~~~N~~~ql~~lr~~~~~~~~~l~~vt~~~~ql~kEK 90 (613)
T KOG0992|consen 43 NSNSADDVGGEGFYNESEQLCELRSQCNELTTKLSTVTQGLQQLQKEK 90 (613)
T ss_pred cccchhhhhccccccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHH
Confidence 3777777766655443333333332 2444455555555555
No 247
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=28.39 E-value=1.7e+03 Score=30.50 Aligned_cols=45 Identities=29% Similarity=0.430 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 81 SLENEISALKSEISILQRKKGGSNAQSIEEVKLLDIRVTENEREIKRLKGEVE 133 (1576)
Q Consensus 81 ELEkeIsELKkqLEelEq~~~kle~Ek~~E~K~LQEeI~eLEeEieeLkqKLE 133 (1576)
+||.+...|++++.-+++.+ .|..-+.-+|+.+++++.-++..++
T Consensus 101 elEeENislQKqvs~Lk~sQ--------vefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 101 ELEEENISLQKQVSVLKQSQ--------VEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777665433 2233444445555555555544444
No 248
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=28.19 E-value=1.6e+03 Score=30.23 Aligned_cols=24 Identities=25% Similarity=0.137 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 000395 77 AAKVSLENEISALKSEISILQRKK 100 (1576)
Q Consensus 77 k~K~ELEkeIsELKkqLEelEq~~ 100 (1576)
....=|+.++.++++++++.|...
T Consensus 194 ~a~~~L~~ql~~l~~~l~~aE~~l 217 (754)
T TIGR01005 194 AAADFLAPEIADLSKQSRDAEAEV 217 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666665554333
No 249
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=28.18 E-value=8.1e+02 Score=34.69 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=5.1
Q ss_pred HHHHHHhcC
Q 000395 922 ECYRAAMEF 930 (1576)
Q Consensus 922 e~yr~am~~ 930 (1576)
+.|.-||..
T Consensus 778 ~~~~~~~~~ 786 (1021)
T PTZ00266 778 EMYKEAVNP 786 (1021)
T ss_pred HHHhhhccc
Confidence 456666653
No 250
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=27.44 E-value=7.7e+02 Score=31.24 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 000395 372 RLSQQLEEAGQRIVELQKETNDLV 395 (1576)
Q Consensus 372 QLe~QL~Eak~KleElerq~~EL~ 395 (1576)
-+...|+|-+.+.+-++.+++|+.
T Consensus 248 ~~~~~LqEEr~R~erLEeqlNd~~ 271 (395)
T PF10267_consen 248 FILEALQEERYRYERLEEQLNDLT 271 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455566777777777888888865
No 251
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=27.42 E-value=1.9e+03 Score=30.77 Aligned_cols=162 Identities=20% Similarity=0.194 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCChH------------------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 2 ATDISAKPEASNPC------------------CRVWEDKYKKSQGNRTALRQA--LKLFEQQLDKIQAENLSLKKACQEE 61 (1576)
Q Consensus 2 ~~~~~~~~~~~n~c------------------~~qLKeKleKLEe~RKeLEE~--vklLEEKldqLQaE~~~L~kalEEE 61 (1576)
+++++.+...+.+| -...++--.+.+.+..++.+. -...+.+...+.+....|.+.+.+.
T Consensus 996 ~~~~~~~~~~p~~~~~g~s~~e~~~~~~~~d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~ea 1075 (1189)
T KOG1265|consen 996 AAKVSKKKGSPSSCSGGSSGGESTPAALNSDNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEA 1075 (1189)
T ss_pred ccccccCCCCCCcccccCCCCCCchhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHhHHHh-HHHHHHHHHHHHHHHHHHHHH---HHhhcCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 62 KACAEVEKKGREEV-SAAKVSLENEISALKSEISIL---QRKKGGSNAQS-IEEVKLLDIRVTENEREIKRLKGEVEKEK 136 (1576)
Q Consensus 62 rlree~Er~krEeE-sk~K~ELEkeIsELKkqLEel---Eq~~~kle~Ek-~~E~K~LQEeI~eLEeEieeLkqKLEkEK 136 (1576)
+ ..+ .+.|.-+|++-.+|++.++.. +.+..+.-+++ ..|.+.-.---+.+.+-.++-+...++..
T Consensus 1076 q----------~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~ 1145 (1189)
T KOG1265|consen 1076 Q----------TNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQS 1145 (1189)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 137 IRAESEKKNAEVEKKRAAEAWKCVEAEKGKAEEERRR 173 (1576)
Q Consensus 137 k~aeeekkkaEEekkkaEE~~kkLe~EK~k~EEEK~k 173 (1576)
++.++..++..+.+...++..+.+.++....-+++..
T Consensus 1146 k~~e~L~k~~~~~leql~e~~kal~~e~~~~~e~~~~ 1182 (1189)
T KOG1265|consen 1146 KRQEQLVKKHLEVLEQLAEEEKALDAEAEQEYEEQMA 1182 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
No 252
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=27.23 E-value=1.3e+03 Score=28.64 Aligned_cols=38 Identities=8% Similarity=0.197 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 15 CCRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENL 52 (1576)
Q Consensus 15 c~~qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~ 52 (1576)
.|.-+...+++...+|..+.-++..|++....+.....
T Consensus 10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~ 47 (319)
T PF09789_consen 10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYR 47 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677777777887777777777766665554443
No 253
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.87 E-value=7.7e+02 Score=28.77 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 299 QLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEMAKAEDQRKLAEASRKQAEEEKCHAERLSQQLE 378 (1576)
Q Consensus 299 tLeeLRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~aE~akaqearklAe~akkKA~eEK~~adQLe~QL~ 378 (1576)
++....++......+....++++...+..+..+...+..+.+.+....+++++. .+....++.
T Consensus 25 ~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~-----------------v~~q~~el~ 87 (251)
T PF11932_consen 25 QAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQ-----------------VASQEQELA 87 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhh
Q 000395 379 EAGQRIVELQKETNDLV 395 (1576)
Q Consensus 379 Eak~KleElerq~~EL~ 395 (1576)
..+.++++.+....++.
T Consensus 88 ~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 88 SLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHH
No 254
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.47 E-value=1.6e+03 Score=29.72 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 000395 264 KSEAVSKKLEAEK 276 (1576)
Q Consensus 264 ~ieELleeLEaER 276 (1576)
.|.+.+++|-.+.
T Consensus 713 ~iqsiL~~L~~~i 725 (741)
T KOG4460|consen 713 CIQSILKELGEHI 725 (741)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
No 255
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=26.34 E-value=1.8e+03 Score=30.18 Aligned_cols=17 Identities=35% Similarity=0.360 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 000395 187 QLEALRKEAVDAKSKLV 203 (1576)
Q Consensus 187 qiEkaRqElEkaKRKLE 203 (1576)
+++....++..++++++
T Consensus 171 ~~qe~naeL~rarqree 187 (916)
T KOG0249|consen 171 QLEELNAELQRARQREK 187 (916)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555554
No 256
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=26.28 E-value=7.4e+02 Score=30.28 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 15 CCRVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQ 59 (1576)
Q Consensus 15 c~~qLKeKleKLEe~RKeLEE~vklLEEKldqLQaE~~~L~kalE 59 (1576)
.+..++..+..+|+.-+.-+-....|......+.=+++.|++.++
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~le 122 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLE 122 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Confidence 556667766666654443333344444444444444555555544
No 257
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=25.92 E-value=8.6e+02 Score=26.24 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000395 30 RTALRQALKLFEQQLDKIQA 49 (1576)
Q Consensus 30 RKeLEE~vklLEEKldqLQa 49 (1576)
|+.|..++..+..+++++.+
T Consensus 38 rr~m~~A~~~v~kql~~vs~ 57 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSE 57 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 258
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=25.39 E-value=7.4e+02 Score=26.68 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000395 40 FEQQLDKIQAENLSLKKA 57 (1576)
Q Consensus 40 LEEKldqLQaE~~~L~ka 57 (1576)
++...++|+++...|...
T Consensus 25 v~~~l~~LEae~q~L~~k 42 (126)
T PF09403_consen 25 VESELNQLEAEYQQLEQK 42 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555555544
No 259
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.07 E-value=1.3e+03 Score=27.94 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 000395 81 SLENEISALKSEISIL 96 (1576)
Q Consensus 81 ELEkeIsELKkqLEel 96 (1576)
+++++|.+++.+|.+.
T Consensus 84 ~l~~eI~~~~~~I~~r 99 (265)
T COG3883 84 KLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555443
No 260
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.79 E-value=3.6e+02 Score=27.29 Aligned_cols=64 Identities=30% Similarity=0.476 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000395 325 RKKLEAEKQMLSKEREHAHLEMAKAEDQRKLAEASRKQAEEEKCHAERLSQQLEEAGQRIVELQKETNDLV 395 (1576)
Q Consensus 325 KkKLEkEK~klk~Er~dl~aE~akaqearklAe~akkKA~eEK~~adQLe~QL~Eak~KleElerq~~EL~ 395 (1576)
.+.+-.+...+..+++.+..++..+..+. ..+...+.+++.+..++..+..++.+++.+++.+.
T Consensus 38 ~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-------~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 38 RRELQQELEELRAERNELSKEIGKLKKAG-------EDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHTT-------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCc-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444445554444444432221 11223333444555666666666666666666543
No 261
>PLN03086 PRLI-interacting factor K; Provisional
Probab=24.51 E-value=3.4e+02 Score=35.72 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=11.5
Q ss_pred cccccccCCcceec
Q 000395 900 NFEEFADGDYMKLL 913 (1576)
Q Consensus 900 ~fe~~~~g~~mkll 913 (1576)
..-.++.|.|+||-
T Consensus 177 ~~~~Lpkgt~vklq 190 (567)
T PLN03086 177 RYIWLPKGTYAKLQ 190 (567)
T ss_pred EEeecCCCCEEEEe
Confidence 55678999999994
No 262
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=24.43 E-value=1.8e+03 Score=29.57 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 000395 370 AERLSQQLEEAGQRIVELQKETND 393 (1576)
Q Consensus 370 adQLe~QL~Eak~KleElerq~~E 393 (1576)
+..++.++..+..-+++++++++.
T Consensus 319 I~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 319 ISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777777777777777777766
No 263
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.95 E-value=1.6e+03 Score=28.84 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 298 LQLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAHLEMAKAEDQRKLAEASRKQAEEEKCHAERLSQQL 377 (1576)
Q Consensus 298 ~tLeeLRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~aE~akaqearklAe~akkKA~eEK~~adQLe~QL 377 (1576)
.+++..+++-....++...++.+-.+.+-.|+.++.+...+.......++.++.. +..+..+..+..-++++++-+.|+
T Consensus 136 ~~~e~~~kkre~~k~~~~l~~~~ekK~e~sLe~eR~k~~~ql~~~~~~~e~~e~~-e~~~s~~~~~k~~k~~ae~~~qq~ 214 (438)
T COG4487 136 NTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENE-EQRESKWAILKKLKRRAELGSQQV 214 (438)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555444444444444444444456666666666555444333322211 222223334444444556666655
Q ss_pred HHHH
Q 000395 378 EEAG 381 (1576)
Q Consensus 378 ~Eak 381 (1576)
+-+.
T Consensus 215 q~~a 218 (438)
T COG4487 215 QGEA 218 (438)
T ss_pred hHHH
Confidence 5444
No 264
>COG4499 Predicted membrane protein [Function unknown]
Probab=23.89 E-value=2e+02 Score=35.92 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 000395 140 ESEKKNAEVEKKRAAE 155 (1576)
Q Consensus 140 eeekkkaEEekkkaEE 155 (1576)
.+..+++++++..++|
T Consensus 396 ~~aeaka~eek~~~ee 411 (434)
T COG4499 396 EEAEAKAKEEKLKQEE 411 (434)
T ss_pred hhhHhhhhhhhhhhhh
Confidence 3344445555554444
No 265
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=22.78 E-value=9.7e+02 Score=32.87 Aligned_cols=9 Identities=56% Similarity=0.929 Sum_probs=3.5
Q ss_pred ccccccCCC
Q 000395 649 IAPSLALSG 657 (1576)
Q Consensus 649 ~~~~~~~~~ 657 (1576)
++|-.++||
T Consensus 664 iVPTSA~sG 672 (1064)
T KOG1144|consen 664 IVPTSAISG 672 (1064)
T ss_pred eeecccccC
Confidence 344333433
No 266
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=22.77 E-value=7.8e+02 Score=28.60 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 77 AAKVSLENEISALKSEISILQRKKGGSNAQSIEEVKLLDIRVTENEREIKRLKGEVE 133 (1576)
Q Consensus 77 k~K~ELEkeIsELKkqLEelEq~~~kle~Ek~~E~K~LQEeI~eLEeEieeLkqKLE 133 (1576)
..+++||..|.+++.+++.-+.+..... .-+.+++.+.|.-|.+.-..|+.+|+
T Consensus 199 ~~k~~Le~~ia~~k~K~e~~e~r~~E~r---~ieEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 199 DKKKELELKIAQLKKKLETDEIRSEEER---EIEEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355666666666666655443322111 23334445555555555555554443
No 267
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.41 E-value=9.3e+02 Score=25.40 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 000395 116 IRVTENEREIK 126 (1576)
Q Consensus 116 EeI~eLEeEie 126 (1576)
..+.+++.++.
T Consensus 99 ~~l~e~q~~l~ 109 (121)
T PRK09343 99 EKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 268
>PF05320 Pox_RNA_Pol_19: Poxvirus DNA-directed RNA polymerase 19 kDa subunit; InterPro: IPR007984 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The poxvirus DNA-directed RNA polymerase (2.7.7.6 from EC) catalyses the transcription of DNA into RNA. It consists of at least eight subunits, this is the 19 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=22.34 E-value=39 Score=36.98 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=14.7
Q ss_pred cccchhhhHHHHHhhcCCh
Q 000395 1255 IGFICGASYNIFRKHTSDP 1273 (1576)
Q Consensus 1255 ~~~i~~~sy~il~~~~~~~ 1273 (1576)
-|+|+| |||+||+|+.-.
T Consensus 86 TGIiaE-SyNLLqRGRlPL 103 (167)
T PF05320_consen 86 TGIIAE-SYNLLQRGRLPL 103 (167)
T ss_pred HHHHHH-HHHHHHcccccc
Confidence 377887 999999999643
No 269
>PF14282 FlxA: FlxA-like protein
Probab=21.97 E-value=3.7e+02 Score=27.72 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 000395 79 KVSLENEISALKSEISILQRKKGGSNAQSIEEVKLLDIRVTENEREIKRLK 129 (1576)
Q Consensus 79 K~ELEkeIsELKkqLEelEq~~~kle~Ek~~E~K~LQEeI~eLEeEieeLk 129 (1576)
...|++++..|..+|..+..........+..-.+.|+.+|..|+.+|..++
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777777766442111111112336677788888888888543
No 270
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.88 E-value=8.8e+02 Score=24.92 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 14 PCCRVWEDKYKKSQGNRTALRQALKLFE 41 (1576)
Q Consensus 14 ~c~~qLKeKleKLEe~RKeLEE~vklLE 41 (1576)
|.+..+-..|..+......+......++
T Consensus 3 ~~~q~~~~~~q~~q~~~~~l~~q~~~le 30 (110)
T TIGR02338 3 PQVQNQLAQLQQLQQQLQAVATQKQQVE 30 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444545555544444444333333333
No 271
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=21.74 E-value=1.2e+03 Score=26.23 Aligned_cols=10 Identities=10% Similarity=0.129 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 000395 326 KKLEAEKQML 335 (1576)
Q Consensus 326 kKLEkEK~kl 335 (1576)
.+++.++.++
T Consensus 134 ~~I~~~k~~a 143 (181)
T PRK13454 134 KRIAEIRAGA 143 (181)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 272
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=21.23 E-value=1.1e+03 Score=25.76 Aligned_cols=10 Identities=10% Similarity=0.282 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 000395 243 QLEALRKEAG 252 (1576)
Q Consensus 243 qaeqLrkEae 252 (1576)
++..+.+++.
T Consensus 78 kvr~a~~dv~ 87 (136)
T PF11570_consen 78 KVRRAQKDVQ 87 (136)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444444
No 273
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=20.98 E-value=5.6e+02 Score=32.36 Aligned_cols=88 Identities=15% Similarity=0.208 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHH
Q 000395 31 TALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISILQRKKGGSNAQSIEE 110 (1576)
Q Consensus 31 KeLEE~vklLEEKldqLQaE~~~L~kalEEErlree~Er~krEeEsk~K~ELEkeIsELKkqLEelEq~~~kle~Ek~~E 110 (1576)
.-|.++.....+.++.||.|...+.+-++..+ .+.++...-..+|...+......+++.|.+...++.
T Consensus 128 tSlKekt~~vnQHVq~LQseCsvlsEnLErrr-------QEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkq----- 195 (558)
T PF15358_consen 128 TSLKEKTSRVNQHVQTLQSECSVLSENLERRR-------QEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQ----- 195 (558)
T ss_pred hhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccccc-----
Confidence 34556666677777788888888888776443 222222222233334444444444444443332221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 111 VKLLDIRVTENEREIKRLKGEVEKEK 136 (1576)
Q Consensus 111 ~K~LQEeI~eLEeEieeLkqKLEkEK 136 (1576)
.-.-||+.+.-+++.++.|.
T Consensus 196 ------nS~~LEekLr~lq~qLqdE~ 215 (558)
T PF15358_consen 196 ------NSALLEEKLRYLQQQLQDET 215 (558)
T ss_pred ------chHHHHHHHHHHHHHhcccC
Confidence 12235666666667776664
No 274
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.71 E-value=9.4e+02 Score=24.78 Aligned_cols=33 Identities=36% Similarity=0.366 Sum_probs=17.1
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000395 65 AEVEKKGREEVSAAKVSLENEISALKSEISILQ 97 (1576)
Q Consensus 65 ee~Er~krEeEsk~K~ELEkeIsELKkqLEelE 97 (1576)
........+.+...+.+.+.++..|..+++.+.
T Consensus 62 ~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~ 94 (126)
T PF13863_consen 62 RERAEKRAEEEKKKKEEKEAEIKKLKAELEELK 94 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555566666655555443
No 275
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.47 E-value=7.6e+02 Score=32.60 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 296 YRLQLEALRREADDAKSMLGSEASKSEALRKKLEAEKQMLSKEREHAH 343 (1576)
Q Consensus 296 ae~tLeeLRKKh~dS~~EL~EQLeqlqeiKkKLEkEK~klk~Er~dl~ 343 (1576)
++..+++++++--....++..-.+.++++++.+..++++.+...+++.
T Consensus 196 yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~ 243 (555)
T TIGR03545 196 YKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQ 243 (555)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444432222333333333444444444444444444333333
No 276
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=20.04 E-value=1.3e+03 Score=26.29 Aligned_cols=52 Identities=23% Similarity=0.229 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000395 76 SAAKVSLENEISALKSEISILQRKKGGSNAQSIEEVKLLDIRVTENEREIKRLKGE 131 (1576)
Q Consensus 76 sk~K~ELEkeIsELKkqLEelEq~~~kle~Ek~~E~K~LQEeI~eLEeEieeLkqK 131 (1576)
.....+||..+.+|+.+........... ..++..++..+..+..++...+.+
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~----~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAK----DKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456688888888887755543222211 244556666666666666644333
Done!