Query 000395
Match_columns 1576
No_of_seqs 276 out of 645
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 17:06:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000395.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_173-177//hhsearch_pdb/000395hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 85.6 11.5 30 1086-1115 329-358 (1184)
2 1i84_S Smooth muscle myosin he 1.0 1 1 73.2 13.5 12 1105-1116 439-450 (1184)
3 2i1j_A Moesin; FERM, coiled-co 1.0 1 1 48.7 8.4 27 370-396 435-461 (575)
4 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 44.0 17.7 22 1423-1444 687-708 (1080)
5 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 43.0 19.4 12 1105-1116 413-424 (1080)
6 2fxo_A Myosin heavy chain, car 1.0 1 1 41.9 13.8 102 15-128 21-123 (129)
7 3vkg_A Dynein heavy chain, cyt 1.0 1 1 40.1 29.5 39 1123-1161 2779-2825(3245)
8 3o0z_A RHO-associated protein 1.0 1 1 39.7 18.0 21 116-136 6-26 (168)
9 3oja_B Anopheles plasmodium-re 1.0 1 1 30.2 12.8 135 21-162 449-583 (597)
10 1c1g_A Tropomyosin; contractIl 1.0 1 1 29.2 45.3 283 17-324 2-284 (284)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=85.64 Aligned_cols=30 Identities=7% Similarity=0.211 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 678864455411111024578899999985
Q 000395 1086 RIYCATKSCMAQCSLVSQTEWILQKIMLAL 1115 (1576)
Q Consensus 1086 ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 1115 (1576)
.-|..+..+|.--.....+.+.+-.|+.|+
T Consensus 329 ~~f~~~~~a~~~lg~~~~e~~~i~~ilaai 358 (1184)
T 1i84_S 329 EMFQETLEAMTIMGFTEEEQTSILRVVSSV 358 (1184)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCEECHHHHHHHHHHHHHH
T ss_conf 999999999882125899999999999999
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=73.21 Aligned_cols=12 Identities=42% Similarity=0.861 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q ss_conf 788999999852
Q 000395 1105 EWILQKIMLALK 1116 (1576)
Q Consensus 1105 ~~~~~~i~~~~~ 1116 (1576)
+|+|..|=.+|.
T Consensus 439 ~wlv~~iN~~l~ 450 (1184)
T 1i84_S 439 RWILTRVNKALD 450 (1184)
T ss_dssp HHHHHHHTTTCC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999988637
No 3
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=1.00 E-value=1 Score=48.75 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999889999999752202
Q 000395 370 AERLSQQLEEAGQRIVELQKETNDLVS 396 (1576)
Q Consensus 370 adqLe~QL~Eak~KleElerqi~EL~s 396 (1576)
+.++..++..++...++.+..+....+
T Consensus 435 ~~~~~~~~~~a~~~~~~~~~~l~~~~~ 461 (575)
T 2i1j_A 435 TRRLQEEVEDARRKQDEAAAALLAATT 461 (575)
T ss_dssp -------CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999999998505
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=43.98 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=9.0
Q ss_pred HHHHHHHHHHCCCEECCCCCCH
Q ss_conf 6799998731131013345525
Q 000395 1423 VLSLVELLSCIMSWDWTLSTVV 1444 (1576)
Q Consensus 1423 i~slvEL~~~~mswewt~~~~v 1444 (1576)
|+..+-+--.-....|+|...+
T Consensus 687 vlE~iri~r~Gyp~R~~~~eF~ 708 (1080)
T 2dfs_A 687 VLETIRISAAGFPSRWTYQEFF 708 (1080)
T ss_dssp HHHHHHHHTTSCCEEEEHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHH
T ss_conf 1777758753878511488999
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=43.03 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 788999999852
Q 000395 1105 EWILQKIMLALK 1116 (1576)
Q Consensus 1105 ~~~~~~i~~~~~ 1116 (1576)
+|+|..|=.+|.
T Consensus 413 ~wlV~~iN~~l~ 424 (1080)
T 2dfs_A 413 NWIVDHVNKALH 424 (1080)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999998623
No 6
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=1.00 E-value=1 Score=41.91 Aligned_cols=102 Identities=17% Similarity=0.261 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7899999999999999999999-999999999999999999999999998689999857776999999999999999989
Q 000395 15 CCRVWEDKYKKSQGNRTALRQA-LKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEI 93 (1576)
Q Consensus 15 c~~kLKeKleKLEkeRKeLeEk-vklLEEKldqLQaE~e~LkkalEEEk~kee~Er~krEeEsk~K~kLEkeIseLKkqL 93 (1576)
.+.++++++.+.+..|+.++.. +.+.+++++ |..+++.++..............+.+.+|+..+.++..++
T Consensus 21 el~~lke~l~k~e~~r~ele~~~~~l~~Ek~~--------L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rl 92 (129)
T 2fxo_A 21 EFTRLKEALEKSEARRKELEEKMVSLLQEKND--------LQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRL 92 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999898899999999999999999--------9999997787887589999999988999999999999989
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998613787112899999999999999999999
Q 000395 94 SILQRKKGGSNAQSIEEVKLLDIRVTENEREIKRL 128 (1576)
Q Consensus 94 EelEqk~~klekEk~eE~K~LQEeIseLEkEIeeL 128 (1576)
++++.....+. .+.+.++..+.++.+++..+
T Consensus 93 eeeee~~~~L~----~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 93 EDEEEMNAELT----AKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_conf 99998899999----88888999999999888888
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=40.10 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHH--------HCCHHHHHHCCCCCCCCHHCHHHH
Q ss_conf 110258999998632--------021022210234567520100122
Q 000395 1123 SKERACVFLSLLLLN--------FSTIAEEKSRKSWNSDIILCLDSF 1161 (1576)
Q Consensus 1123 ~~ek~~~~~slll~n--------~s~~~~~~~~~~~~~~~~~~l~sf 1161 (1576)
|.++..++|+|-.|. |--..|-+.--|-++||-.|++..
T Consensus 2779 ~~~~~~llf~L~fFHAvvqERrkfgplGWn~~YeFn~sDl~~s~~~l 2825 (3245)
T 3vkg_A 2779 PAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSI 2825 (3245)
T ss_dssp STHHHHHHHHHHHHHHHHHHGGGGTTTSCSSCCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 28999999999999999999997276656702665567899999999
No 8
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=1.00 E-value=1 Score=39.72 Aligned_cols=21 Identities=5% Similarity=0.246 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999987899999
Q 000395 116 IRVTENEREIKRLKGEVEKEK 136 (1576)
Q Consensus 116 EeIseLEkEIeeLkeKLEkEK 136 (1576)
++|..|++++.++.++|..|.
T Consensus 6 eKi~~LekQL~E~n~kLk~Es 26 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTES 26 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 888999999999999999867
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=30.21 Aligned_cols=135 Identities=7% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999986899998577769999999999999999899999861
Q 000395 21 DKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISILQRKK 100 (1576)
Q Consensus 21 eKleKLEkeRKeLeEkvklLEEKldqLQaE~e~LkkalEEEk~kee~Er~krEeEsk~K~kLEkeIseLKkqLEelEqk~ 100 (1576)
...+++++....++..+..++++..+.++....+....++.+........+.......-.+..+.+.+....++..-+..
T Consensus 449 ~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 528 (597)
T 3oja_B 449 QGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQAR 528 (597)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77499988898899999999999988999999999986555540276611247878889999999886432367888888
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37871128999999999999999999998789999989999998799999999999999999
Q 000395 101 GGSNAQSIEEVKLLDIRVTENEREIKRLKGEVEKEKIRAESEKKNAEVEKKRAAEAWKCVEA 162 (1576)
Q Consensus 101 ~klekEk~eE~K~LQEeIseLEkEIeeLkeKLEkEKk~aeeekKkaEEEkkkaeEa~kkle~ 162 (1576)
. .+....++....++++..++..+++..++...+.++..+..+++..+...++.+
T Consensus 529 ~-------~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 529 R-------TEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred H-------HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7-------765542011136776648899987310147899888899999999999987437
No 10
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=29.20 Aligned_cols=283 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999998689999857776999999999999999989999
Q 000395 17 RVWEDKYKKSQGNRTALRQALKLFEQQLDKIQAENLSLKKACQEEKACAEVEKKGREEVSAAKVSLENEISALKSEISIL 96 (1576)
Q Consensus 17 ~kLKeKleKLEkeRKeLeEkvklLEEKldqLQaE~e~LkkalEEEk~kee~Er~krEeEsk~K~kLEkeIseLKkqLEel 96 (1576)
..+++++..+......+......++.++..+..+...+...+.+-......-+............+...+..+...+...
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDA 81 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37899999988768889999999999999999889888999999999999999999999999999999999999989877
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98613787112899999999999999999999878999998999999879999999999999999998799999999999
Q 000395 97 QRKKGGSNAQSIEEVKLLDIRVTENEREIKRLKGEVEKEKIRAESEKKNAEVEKKRAAEAWKCVEAEKGKAEEERRRANI 176 (1576)
Q Consensus 97 Eqk~~klekEk~eE~K~LQEeIseLEkEIeeLkeKLEkEKk~aeeekKkaEEEkkkaeEa~kkle~Ek~k~EEEK~kale 176 (1576)
+ .+...+..++..+..++..+...+..-...........+.......+....+....
T Consensus 82 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------ 138 (284)
T 1c1g_A 82 E-----------ADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDE------------ 138 (284)
T ss_dssp H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_conf 9-----------88999999999889889988988999999999999888889999998887775106------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74579999999999999999998755675436889899999999999999999579988999999999999999987754
Q 000395 177 EGKKAEEYKLQLEALRKEAVDAKSKLVLESSKLGDMTKKLESEKQKVSKEKKRANNEGKKAEEYIIQLEALRKEAGDAKL 256 (1576)
Q Consensus 177 elKKveELe~qiEkaRqElEkaKRKLEgELk~AqEA~kklEaEKqkaeeekKkAE~E~keAEe~k~qveqLrkEveQKKl 256 (1576)
.....+...+..++......+..+..-.................+.......................+.........
T Consensus 139 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (284)
T 1c1g_A 139 --EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQ 216 (284)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --679999999999999888899889999988998888899899989878879999999999999999999975877888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44578658999999999999998999886568857999999999999999978999978884468999
Q 000395 257 MLVSEASKSEAVSKKLEAEKQMVCKERQRANIEGKKAEEYRLQLEALRREADDAKSMLGSEASKSEAL 324 (1576)
Q Consensus 257 r~eEeQa~ieELleeLEAERakAkaEkkRaD~EL~KaeEae~tLeeLRKKh~dS~~EL~EELeqLqeI 324 (1576)
........+..+...+...........................+..++.+......++......+..|
T Consensus 217 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 284 (284)
T 1c1g_A 217 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998889899889999988999999999999999999988999999999999974369
Done!