Query 000395
Match_columns 1576
No_of_seqs 276 out of 645
Neff 4.7
Searched_HMMs 13730
Date Tue Mar 26 17:15:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000395.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_173-177//hhsearch_scop/000395hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x2ga2 d.104.1.3 (A:1-246) Tw 3.8 74 0.0054 3.2 -0.6 21 1421-1441 226-246 (246)
2 d1x68a1 g.39.1.3 (A:8-36) Four 2.7 1.5E+02 0.011 0.6 0.7 11 659-669 3-13 (29)
3 d2pu9b1 b.34.4.3 (B:1-73) Ferr 2.6 1.5E+02 0.011 0.6 0.0 11 929-939 44-54 (73)
4 d2c8ma1 d.104.1.3 (A:1-256) Li 2.0 1.5E+02 0.011 0.7 -0.8 15 1347-1361 205-219 (256)
5 d2gqba1 a.282.1.1 (A:1-130) Hy 2.0 1.5E+02 0.011 0.7 -0.9 21 908-929 72-92 (130)
6 d1cxzb_ a.2.6.1 (B:) Protein k 1.9 2.3E+02 0.016 -0.8 7.6 26 371-396 59-84 (86)
7 d1x4la1 g.39.1.3 (A:8-36) Four 1.9 2.3E+02 0.017 -0.9 0.8 11 659-669 3-13 (29)
8 d2ftwa1 b.92.1.3 (A:7-59,A:394 1.5 3.1E+02 0.022 -2.0 0.9 19 694-712 103-121 (150)
9 d1seta1 a.2.7.1 (A:1-110) Sery 1.3 3.5E+02 0.025 -2.4 9.7 23 372-394 75-97 (110)
10 d1pdoa_ c.54.1.1 (A:) IIA doma 1.3 2.6E+02 0.019 -1.4 -0.8 61 1149-1209 7-71 (129)
No 1
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.82 E-value=74 Score=3.21 Aligned_cols=21 Identities=24% Similarity=0.689 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHCCCEECCCC
Q ss_conf 546799998731131013345
Q 000395 1421 TDVLSLVELLSCIMSWDWTLS 1441 (1576)
Q Consensus 1421 ~di~slvEL~~~~mswewt~~ 1441 (1576)
.++-.+.+...-|.||||+|+
T Consensus 226 ~~~~~l~~~~~ky~s~eW~~g 246 (246)
T d1x2ga2 226 PDLPNFAETFARQSSWEWNFG 246 (246)
T ss_dssp CSCTTHHHHHHHHTCHHHHTC
T ss_pred HHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999999998298667789
No 2
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.65 E-value=1.5e+02 Score=0.58 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=7.5
Q ss_pred CCCCCCCCCCC
Q ss_conf 53345334688
Q 000395 659 ICSESMSGIDS 669 (1576)
Q Consensus 659 ~~~~~isg~~s 669 (1576)
.|+.||+|++-
T Consensus 3 ~C~kPItg~gG 13 (29)
T d1x68a1 3 ACSKPISGLTG 13 (29)
T ss_dssp TTCCCCCTTTT
T ss_pred CCCCCCCCCCC
T ss_conf 54565315577
No 3
>d2pu9b1 b.34.4.3 (B:1-73) Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain {Synechocystis sp. [TaxId: 1143]}
Probab=2.65 E-value=1.5e+02 Score=0.57 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=8.5
Q ss_pred CCCCCCCCCCC
Q ss_conf 49999995422
Q 000395 929 EFPLSPTLPEI 939 (1576)
Q Consensus 929 ~~~~sp~lp~i 939 (1576)
-.|+||+||.+
T Consensus 44 Gr~ISanlP~~ 54 (73)
T d2pu9b1 44 GRPISANLPVL 54 (73)
T ss_dssp TEECCCSSCEE
T ss_pred CCEECCCCCEE
T ss_conf 85956997699
No 4
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]}
Probab=2.01 E-value=1.5e+02 Score=0.67 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 258999999999985
Q 000395 1347 VSVEIVMSLLLEKLQ 1361 (1576)
Q Consensus 1347 ~Sid~~~s~lle~l~ 1361 (1576)
+++|.|+..|++.+.
T Consensus 205 ~~~e~~~~~l~~~f~ 219 (256)
T d2c8ma1 205 VSIDEVRNALIRGFS 219 (256)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 899999999999999
No 5
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=1.97 E-value=1.5e+02 Score=0.70 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=8.8
Q ss_pred CCCEECCCCCCCCHHHHHHHHC
Q ss_conf 8203215889425899999854
Q 000395 908 DYMKLLDLDNPADEECYRAAME 929 (1576)
Q Consensus 908 ~~mkll~ldn~~~e~~yr~a~~ 929 (1576)
|.||||+||-.- ++|-+-|-|
T Consensus 72 DLmKlLgLDSSL-~aRKeLA~E 92 (130)
T d2gqba1 72 DLMKALDIDSSL-SARKELAKE 92 (130)
T ss_dssp HHHHHTCCCCSH-HHHHHHHHH
T ss_pred HHHHHHCCCCCH-HHHHHHHHH
T ss_conf 999994675568-999999998
No 6
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.92 E-value=2.3e+02 Score=-0.84 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999889999999752202
Q 000395 371 ERLSQQLEEAGQRIVELQKETNDLVS 396 (1576)
Q Consensus 371 dqLe~QL~Eak~KleElerqi~EL~s 396 (1576)
.+....|...+.++.+++.++++|++
T Consensus 59 ~~V~~eL~~sN~kL~~L~~eL~eLna 84 (86)
T d1cxzb_ 59 GPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999989899999999998666
No 7
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.87 E-value=2.3e+02 Score=-0.95 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=6.8
Q ss_pred CCCCCCCCCCC
Q ss_conf 53345334688
Q 000395 659 ICSESMSGIDS 669 (1576)
Q Consensus 659 ~~~~~isg~~s 669 (1576)
.|+.||+|++-
T Consensus 3 ~C~kPItg~gg 13 (29)
T d1x4la1 3 GCTNPISGLGG 13 (29)
T ss_dssp TTTBCCCCSSS
T ss_pred CCCCCCCCCCC
T ss_conf 55775323577
No 8
>d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]}
Probab=1.47 E-value=3.1e+02 Score=-1.98 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCCCCCCCCE
Q ss_conf 7765454322344557730
Q 000395 694 SSASFSDRQLMGSQERGAF 712 (1576)
Q Consensus 694 ~~~s~sd~~l~~sq~~~~~ 712 (1576)
--.-|.||+++|..++|.|
T Consensus 103 G~iV~~~g~~~~~~g~Grf 121 (150)
T d2ftwa1 103 GNIVWSDNKLSCVKGSGRF 121 (150)
T ss_dssp TEEEEETTEECCCTTCCCB
T ss_pred CEEEEECCEEEECCCCCEE
T ss_conf 8999989999515888558
No 9
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=1.33 E-value=3.5e+02 Score=-2.41 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998899999997522
Q 000395 372 RLSQQLEEAGQRIVELQKETNDL 394 (1576)
Q Consensus 372 qLe~QL~Eak~KleElerqi~EL 394 (1576)
.+..++...+.++.+.+.++.++
T Consensus 75 ~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 75 ALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999
No 10
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]}
Probab=1.27 E-value=2.6e+02 Score=-1.37 Aligned_cols=61 Identities=10% Similarity=-0.105 Sum_probs=29.3
Q ss_pred CCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCEEEEEECCCCCC
Q ss_conf 4567520100122233443321468879988752789998899986----168188861478653
Q 000395 1149 SWNSDIILCLDSFASHFNAVMSDAEARRVFDELCLDELLSLIEDFL----MEGKVMTCTDLSSET 1209 (1576)
Q Consensus 1149 ~~~~~~~~~l~sf~~~i~~v~~~~e~r~~~~~~~~~~ll~liedfl----~~~~v~~~~~~~~~~ 1209 (1576)
..||+|+..+-+-...|.+-..++++=.+...-..+.+..-+++++ -+..|+|+.|+...+
T Consensus 7 ~sHG~~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~vliltDl~GGs 71 (129)
T d1pdoa_ 7 GTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGS 71 (129)
T ss_dssp ECSBTHHHHHHHHHHHHHCCCSSEEEECBCTTCCHHHHHHHHHHHHTTSCCTTCEEEEESSTTSH
T ss_pred ECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 81857999999999998199878699982699799999999999998357899789998056543
Done!