Query 000396
Match_columns 1576
No_of_seqs 305 out of 1003
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 07:07:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 99.8 1E-19 2.2E-24 241.4 17.6 140 1314-1506 514-658 (1163)
2 TIGR02169 SMC_prok_A chromosom 99.8 8.1E-18 1.8E-22 221.8 22.2 140 1314-1505 520-660 (1164)
3 KOG0996 Structural maintenance 99.7 1.3E-16 2.8E-21 200.4 19.8 141 1313-1506 614-760 (1293)
4 PF13589 HATPase_c_3: Histidin 99.7 1.4E-17 3E-22 171.5 7.1 132 158-313 1-137 (137)
5 KOG0933 Structural maintenance 99.6 8E-16 1.7E-20 190.8 13.8 195 1314-1564 518-717 (1174)
6 KOG0018 Structural maintenance 99.6 1.3E-14 2.8E-19 181.8 19.6 142 1313-1506 500-646 (1141)
7 KOG0964 Structural maintenance 99.5 1.5E-13 3.3E-18 170.2 18.8 139 1313-1506 520-661 (1200)
8 PRK05218 heat shock protein 90 99.5 2.4E-12 5.3E-17 161.4 23.0 133 142-278 6-155 (613)
9 PRK14083 HSP90 family protein; 99.5 1.8E-12 3.9E-17 161.6 20.3 293 146-527 7-318 (601)
10 PF06470 SMC_hinge: SMC protei 99.3 3.3E-12 7.1E-17 127.3 10.1 117 1315-1481 2-119 (120)
11 PTZ00130 heat shock protein 90 99.3 1.1E-11 2.4E-16 156.7 12.0 203 92-320 19-239 (814)
12 COG0323 MutL DNA mismatch repa 99.3 9.1E-12 2E-16 156.7 10.9 119 143-279 6-128 (638)
13 COG0326 HtpG Molecular chapero 99.2 5.6E-11 1.2E-15 146.2 10.0 156 142-322 7-179 (623)
14 TIGR00585 mutl DNA mismatch re 99.2 1.2E-10 2.5E-15 135.6 11.5 118 143-276 5-125 (312)
15 PRK00095 mutL DNA mismatch rep 99.1 2.2E-10 4.7E-15 144.4 12.4 119 143-278 5-126 (617)
16 PTZ00272 heat shock protein 83 99.0 1.2E-09 2.7E-14 138.1 10.6 128 143-278 6-150 (701)
17 KOG1979 DNA mismatch repair pr 98.8 1.2E-08 2.6E-13 123.3 11.5 159 150-346 17-187 (694)
18 COG1389 DNA topoisomerase VI, 98.7 3.4E-08 7.5E-13 117.2 10.6 109 158-279 35-150 (538)
19 TIGR02168 SMC_prok_B chromosom 98.7 4.6E-07 9.9E-12 120.6 20.6 143 1314-1504 518-665 (1179)
20 KOG1978 DNA mismatch repair pr 98.5 2.3E-07 5.1E-12 114.9 9.6 106 157-279 18-125 (672)
21 KOG1977 DNA mismatch repair pr 98.5 1.2E-07 2.5E-12 116.0 4.6 161 151-345 13-188 (1142)
22 PRK14868 DNA topoisomerase VI 98.4 2E-06 4.3E-11 108.9 14.0 108 159-279 46-161 (795)
23 PRK04184 DNA topoisomerase VI 98.2 9.6E-06 2.1E-10 100.8 14.0 106 160-278 37-151 (535)
24 TIGR01052 top6b DNA topoisomer 98.2 8E-06 1.7E-10 100.5 12.0 108 159-279 28-142 (488)
25 KOG0020 Endoplasmic reticulum 98.1 7.4E-06 1.6E-10 97.7 7.9 108 159-269 95-217 (785)
26 PRK05559 DNA topoisomerase IV 98.0 1.4E-05 3.1E-10 101.7 8.5 104 157-270 35-142 (631)
27 PRK14867 DNA topoisomerase VI 97.9 7.9E-05 1.7E-09 94.5 13.6 107 159-278 36-150 (659)
28 TIGR01055 parE_Gneg DNA topois 97.9 2.4E-05 5.1E-10 99.5 8.2 96 158-270 29-135 (625)
29 KOG0019 Molecular chaperone (H 97.8 2.6E-05 5.5E-10 96.0 6.7 129 140-276 35-179 (656)
30 smart00433 TOP2c Topoisomerase 97.8 4E-05 8.7E-10 97.1 7.6 100 162-270 4-106 (594)
31 TIGR01059 gyrB DNA gyrase, B s 97.7 7.5E-05 1.6E-09 95.7 9.8 103 158-270 29-135 (654)
32 PRK05644 gyrB DNA gyrase subun 97.7 7.9E-05 1.7E-09 95.1 9.7 110 158-278 36-148 (638)
33 PF02518 HATPase_c: Histidine 97.7 0.00021 4.6E-09 70.2 9.7 99 160-278 6-109 (111)
34 PRK14939 gyrB DNA gyrase subun 97.6 9E-05 2E-09 95.6 8.3 94 158-270 36-142 (756)
35 KOG0250 DNA repair protein RAD 97.3 0.0088 1.9E-07 78.6 18.8 50 1313-1363 491-540 (1074)
36 TIGR01058 parE_Gpos DNA topois 96.9 0.0014 3.1E-08 83.8 7.1 104 158-271 33-140 (637)
37 PTZ00108 DNA topoisomerase 2-l 96.6 0.0055 1.2E-07 83.5 9.5 122 138-267 34-164 (1388)
38 PLN03128 DNA topoisomerase 2; 96.5 0.0057 1.2E-07 82.4 8.3 121 137-266 30-155 (1135)
39 PLN03237 DNA topoisomerase 2; 96.4 0.0081 1.8E-07 81.8 9.1 127 129-266 49-180 (1465)
40 COG3290 CitA Signal transducti 96.4 0.0091 2E-07 74.2 8.7 101 158-279 426-531 (537)
41 cd00075 HATPase_c Histidine ki 96.4 0.017 3.6E-07 53.4 8.6 88 160-266 1-93 (103)
42 smart00387 HATPase_c Histidine 96.3 0.031 6.6E-07 52.5 10.2 49 160-211 6-56 (111)
43 COG0187 GyrB Type IIA topoisom 96.2 0.0062 1.4E-07 76.6 5.8 103 158-270 35-141 (635)
44 PTZ00109 DNA gyrase subunit b; 96.1 0.0061 1.3E-07 79.6 5.6 49 158-208 128-176 (903)
45 PRK10604 sensor protein RstB; 96.1 0.036 7.8E-07 67.6 11.6 99 159-278 319-422 (433)
46 PRK10755 sensor protein BasS/P 95.7 0.048 1.1E-06 64.0 10.5 98 159-278 247-349 (356)
47 PRK09467 envZ osmolarity senso 95.6 0.052 1.1E-06 65.2 10.3 88 159-268 331-423 (435)
48 PRK11006 phoR phosphate regulo 95.6 0.075 1.6E-06 64.4 11.8 102 159-279 317-423 (430)
49 PRK09470 cpxA two-component se 95.6 0.053 1.2E-06 65.3 10.2 97 160-277 354-455 (461)
50 PHA02569 39 DNA topoisomerase 95.5 0.014 3E-07 74.6 5.2 102 159-267 45-151 (602)
51 PRK10364 sensor protein ZraS; 95.5 0.063 1.4E-06 65.5 10.6 95 159-278 348-447 (457)
52 PRK09303 adaptive-response sen 95.4 0.085 1.8E-06 63.5 10.9 98 159-277 272-375 (380)
53 TIGR01386 cztS_silS_copS heavy 95.3 0.11 2.4E-06 62.4 11.4 50 159-211 353-404 (457)
54 TIGR02168 SMC_prok_B chromosom 95.2 0.25 5.4E-06 66.9 15.6 30 1315-1350 502-531 (1179)
55 PRK15053 dpiB sensor histidine 95.2 0.11 2.5E-06 64.5 11.5 101 160-279 433-539 (545)
56 PRK11086 sensory histidine kin 95.1 0.098 2.1E-06 64.5 10.7 98 159-279 433-535 (542)
57 PRK11360 sensory histidine kin 94.8 0.092 2E-06 64.6 9.2 50 159-211 500-552 (607)
58 TIGR02916 PEP_his_kin putative 94.8 0.13 2.9E-06 66.6 10.8 85 159-267 579-669 (679)
59 COG0642 BaeS Signal transducti 94.7 0.11 2.4E-06 57.7 8.8 49 159-211 228-278 (336)
60 PRK11100 sensory histidine kin 94.7 0.14 2.9E-06 61.8 9.9 51 159-212 368-420 (475)
61 PRK10549 signal transduction h 94.6 0.16 3.5E-06 61.6 10.5 101 159-278 352-457 (466)
62 PRK10337 sensor protein QseC; 94.4 0.13 2.7E-06 62.4 9.0 87 159-268 352-441 (449)
63 TIGR03785 marine_sort_HK prote 94.3 0.22 4.7E-06 65.2 11.2 99 159-275 597-700 (703)
64 TIGR02966 phoR_proteo phosphat 94.3 0.25 5.5E-06 56.1 10.5 91 159-267 229-324 (333)
65 PRK15347 two component system 94.2 0.19 4.1E-06 66.5 10.7 96 159-278 513-613 (921)
66 PRK09835 sensor kinase CusS; P 94.1 0.26 5.6E-06 60.0 10.9 99 159-277 375-478 (482)
67 COG4191 Signal transduction hi 94.1 0.19 4E-06 63.6 9.6 59 152-211 490-550 (603)
68 PRK10815 sensor protein PhoQ; 94.0 0.2 4.3E-06 62.6 9.7 95 159-278 378-477 (485)
69 TIGR01925 spIIAB anti-sigma F 94.0 0.37 7.9E-06 49.6 10.0 48 159-206 39-88 (137)
70 TIGR02956 TMAO_torS TMAO reduc 93.9 0.21 4.6E-06 66.6 10.2 99 158-278 578-682 (968)
71 PRK04069 serine-protein kinase 93.7 0.32 6.9E-06 52.2 9.4 53 158-210 41-95 (161)
72 COG4585 Signal transduction hi 93.7 0.21 4.6E-06 59.7 8.8 73 158-266 278-353 (365)
73 PRK11466 hybrid sensory histid 93.6 0.33 7.2E-06 64.5 11.4 96 159-278 561-661 (914)
74 PRK11644 sensory histidine kin 93.6 0.17 3.8E-06 63.4 8.3 45 159-207 410-456 (495)
75 TIGR02938 nifL_nitrog nitrogen 93.6 0.35 7.6E-06 58.2 10.6 52 160-211 388-442 (494)
76 PRK11073 glnL nitrogen regulat 93.4 0.26 5.7E-06 57.5 8.8 94 159-277 237-345 (348)
77 PRK10490 sensor protein KdpD; 93.2 0.43 9.3E-06 64.2 11.5 99 159-278 778-881 (895)
78 PRK13837 two-component VirA-li 93.0 0.46 9.9E-06 63.2 11.1 96 159-279 560-675 (828)
79 PRK10618 phosphotransfer inter 92.9 0.48 1E-05 63.7 11.2 100 159-279 565-672 (894)
80 PRK03660 anti-sigma F factor; 92.8 0.77 1.7E-05 47.6 10.3 49 158-206 38-88 (146)
81 PF13581 HATPase_c_2: Histidin 92.6 0.58 1.2E-05 47.3 8.8 53 158-210 30-84 (125)
82 PRK11107 hybrid sensory histid 92.4 0.5 1.1E-05 62.6 10.2 100 159-278 408-517 (919)
83 PRK11091 aerobic respiration c 91.9 0.69 1.5E-05 60.7 10.7 102 159-279 398-505 (779)
84 KOG1845 MORC family ATPases [C 91.9 0.15 3.3E-06 66.3 4.6 94 156-266 143-246 (775)
85 PRK10841 hybrid sensory kinase 91.8 0.78 1.7E-05 62.0 11.1 100 159-278 562-666 (924)
86 TIGR01924 rsbW_low_gc serine-p 91.8 1.1 2.5E-05 48.1 10.3 52 159-210 42-95 (159)
87 PRK10547 chemotaxis protein Ch 91.2 1.2 2.5E-05 58.4 11.3 114 163-277 389-521 (670)
88 PRK10600 nitrate/nitrite senso 91.0 0.56 1.2E-05 59.4 8.2 84 160-278 470-555 (569)
89 PRK13560 hypothetical protein; 91.0 0.6 1.3E-05 60.4 8.7 48 160-207 712-762 (807)
90 PRK04863 mukB cell division pr 90.0 0.64 1.4E-05 65.3 7.9 47 1313-1363 681-728 (1486)
91 PRK09959 hybrid sensory histid 89.9 1.2 2.6E-05 61.2 10.6 99 159-279 828-936 (1197)
92 COG2205 KdpD Osmosensitive K+ 89.7 1.7 3.7E-05 57.2 10.7 97 159-278 775-878 (890)
93 COG0643 CheA Chemotaxis protei 88.6 2 4.4E-05 56.5 10.5 118 162-279 435-575 (716)
94 PRK13557 histidine kinase; Pro 88.3 2.5 5.4E-05 52.0 10.7 97 159-278 277-393 (540)
95 KOG0787 Dehydrogenase kinase [ 88.1 1.3 2.8E-05 53.7 7.6 105 159-272 260-374 (414)
96 smart00634 BID_1 Bacterial Ig- 85.9 2.4 5.3E-05 41.5 7.0 64 984-1048 4-67 (92)
97 COG2972 Predicted signal trans 85.1 3.1 6.7E-05 51.9 9.1 53 159-211 350-405 (456)
98 PRK13559 hypothetical protein; 85.0 2.1 4.6E-05 50.5 7.4 48 160-207 268-319 (361)
99 COG2172 RsbW Anti-sigma regula 84.0 8.7 0.00019 41.4 10.7 52 158-209 39-93 (146)
100 KOG1845 MORC family ATPases [C 82.6 0.84 1.8E-05 59.8 2.9 56 195-270 2-57 (775)
101 COG3920 Signal transduction hi 82.0 2 4.3E-05 49.0 5.2 50 158-207 121-174 (221)
102 COG4564 Signal transduction hi 80.2 4.9 0.00011 48.3 7.6 91 160-278 356-448 (459)
103 COG3850 NarQ Signal transducti 77.8 4.5 9.8E-05 51.2 6.7 79 159-272 481-562 (574)
104 KOG0979 Structural maintenance 75.7 15 0.00033 49.5 10.8 47 1313-1359 446-492 (1072)
105 COG3851 UhpB Signal transducti 74.1 7 0.00015 47.5 6.7 46 158-207 409-456 (497)
106 PRK10935 nitrate/nitrite senso 71.7 4.7 0.0001 50.6 4.9 44 160-207 472-518 (565)
107 PF02369 Big_1: Bacterial Ig-l 63.9 18 0.00039 36.3 6.4 64 993-1058 18-89 (100)
108 KOG0355 DNA topoisomerase type 54.6 20 0.00043 47.7 6.0 71 139-210 33-103 (842)
109 COG5000 NtrY Signal transducti 53.6 21 0.00046 46.2 5.8 52 160-211 601-658 (712)
110 COG3852 NtrB Signal transducti 52.1 47 0.001 40.2 7.9 97 159-278 241-353 (363)
111 TIGR03769 P_ac_wall_RPT actino 49.8 10 0.00022 32.8 1.6 17 829-845 6-23 (41)
112 cd04715 BAH_Orc1p_like BAH, or 47.6 43 0.00093 36.9 6.3 104 596-708 12-123 (159)
113 KOG0996 Structural maintenance 46.2 54 0.0012 45.3 8.0 42 1320-1366 695-736 (1293)
114 COG4251 Bacteriophytochrome (l 45.8 50 0.0011 43.2 7.3 51 160-212 637-689 (750)
115 cd04713 BAH_plant_3 BAH, or Br 41.0 71 0.0015 34.5 6.7 98 601-704 8-105 (146)
116 PF02196 RBD: Raf-like Ras-bin 40.2 53 0.0012 31.4 5.0 52 41-95 3-56 (71)
117 PF07106 TBPIP: Tat binding pr 39.6 50 0.0011 36.1 5.4 59 1234-1298 72-130 (169)
118 PF14501 HATPase_c_5: GHKL dom 38.3 43 0.00094 33.0 4.3 44 158-201 4-48 (100)
119 COG5002 VicK Signal transducti 36.9 51 0.0011 40.5 5.2 102 159-280 342-449 (459)
120 COG4192 Signal transduction hi 36.5 52 0.0011 41.6 5.3 61 149-211 554-617 (673)
121 PF07106 TBPIP: Tat binding pr 34.1 77 0.0017 34.7 5.8 46 1229-1274 81-135 (169)
122 PRK02119 hypothetical protein; 30.8 1.5E+02 0.0033 28.8 6.4 54 1229-1290 4-57 (73)
123 PRK00295 hypothetical protein; 30.0 1.6E+02 0.0034 28.2 6.3 51 1232-1290 3-53 (68)
124 PF06470 SMC_hinge: SMC protei 29.8 2.5E+02 0.0053 28.2 8.2 42 1314-1359 78-119 (120)
125 PRK11637 AmiB activator; Provi 29.7 69 0.0015 40.0 5.1 42 1231-1272 44-85 (428)
126 PF13860 FlgD_ig: FlgD Ig-like 29.7 95 0.0021 30.0 5.0 36 1098-1133 22-57 (81)
127 COG3275 LytS Putative regulato 29.7 56 0.0012 41.6 4.1 49 160-208 457-508 (557)
128 PF12325 TMF_TATA_bd: TATA ele 29.4 84 0.0018 33.3 4.8 44 1229-1272 18-61 (120)
129 PF05266 DUF724: Protein of un 29.0 1.1E+02 0.0023 34.8 5.9 71 1222-1293 98-168 (190)
130 COG3883 Uncharacterized protei 28.7 51 0.0011 39.1 3.4 15 1313-1327 128-142 (265)
131 smart00455 RBD Raf-like Ras-bi 27.2 99 0.0021 29.6 4.5 52 41-95 2-55 (70)
132 PF07028 DUF1319: Protein of u 27.1 1.8E+02 0.0039 31.2 6.7 54 1231-1284 43-96 (126)
133 PRK04325 hypothetical protein; 27.0 2E+02 0.0043 28.0 6.5 53 1230-1290 5-57 (74)
134 PRK00736 hypothetical protein; 26.7 1.9E+02 0.0041 27.7 6.2 51 1232-1290 3-53 (68)
135 PRK11637 AmiB activator; Provi 26.4 85 0.0018 39.2 5.1 9 1506-1514 406-414 (428)
136 cd01818 TIAM1_RBD Ubiquitin do 26.3 87 0.0019 30.9 3.9 28 41-71 2-29 (77)
137 COG5266 CbiK ABC-type Co2+ tra 26.1 1.3E+02 0.0029 35.6 6.0 71 970-1048 147-227 (264)
138 KOG0518 Actin-binding cytoskel 25.3 2.2E+03 0.047 30.7 19.6 57 1102-1173 872-928 (1113)
139 PRK02793 phi X174 lysis protei 24.9 2.2E+02 0.0048 27.6 6.4 53 1231-1291 5-57 (72)
140 PF13715 DUF4480: Domain of un 24.8 1.8E+02 0.0039 27.8 5.9 35 1144-1183 29-63 (88)
141 cd00632 Prefoldin_beta Prefold 24.5 1.4E+02 0.0031 30.3 5.4 36 1232-1267 68-103 (105)
142 PRK04406 hypothetical protein; 24.5 2.2E+02 0.0048 27.9 6.3 52 1231-1290 8-59 (75)
143 PRK00846 hypothetical protein; 24.2 2.3E+02 0.0051 28.0 6.4 54 1229-1290 8-61 (77)
144 PF08317 Spc7: Spc7 kinetochor 23.6 1.6E+02 0.0034 35.8 6.4 38 1235-1272 210-247 (325)
145 PF10670 DUF4198: Domain of un 23.5 1.8E+02 0.0039 32.1 6.4 25 1146-1174 189-213 (215)
146 PF04111 APG6: Autophagy prote 23.4 1.7E+02 0.0037 35.6 6.6 43 1230-1272 46-88 (314)
147 PF04102 SlyX: SlyX; InterPro 22.8 1.8E+02 0.0038 27.8 5.2 41 1232-1272 2-42 (69)
148 COG2900 SlyX Uncharacterized p 22.6 2.7E+02 0.0058 27.4 6.3 56 1230-1293 4-59 (72)
149 COG4932 Predicted outer membra 22.5 2.9E+02 0.0063 39.2 8.9 99 994-1114 1073-1185(1531)
150 PF03962 Mnd1: Mnd1 family; I 22.4 1.6E+02 0.0036 33.2 5.8 28 1257-1284 112-139 (188)
151 PF05266 DUF724: Protein of un 22.0 1.5E+02 0.0032 33.7 5.3 51 1232-1290 129-179 (190)
152 KOG1692 Putative cargo transpo 21.8 7.2E+02 0.016 28.7 10.4 63 1099-1191 53-117 (201)
153 PRK10884 SH3 domain-containing 21.6 1.9E+02 0.004 33.3 6.1 6 1150-1155 66-71 (206)
154 PF13620 CarboxypepD_reg: Carb 21.5 1.5E+02 0.0032 27.8 4.6 32 1145-1180 33-64 (82)
155 PF11932 DUF3450: Protein of u 20.9 1.4E+02 0.0031 34.7 5.2 9 1281-1289 88-96 (251)
156 PF07889 DUF1664: Protein of u 20.9 2.1E+02 0.0046 30.6 5.9 27 1224-1250 32-59 (126)
157 PF12329 TMF_DNA_bd: TATA elem 20.8 2.4E+02 0.0051 27.5 5.7 48 1237-1292 22-69 (74)
158 smart00338 BRLZ basic region l 20.8 2.2E+02 0.0049 26.4 5.4 44 1228-1271 20-63 (65)
159 PF04977 DivIC: Septum formati 20.6 2.3E+02 0.005 26.6 5.7 47 1235-1289 18-64 (80)
160 PF05377 FlaC_arch: Flagella a 20.5 2E+02 0.0044 26.8 4.8 23 1245-1267 11-33 (55)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.82 E-value=1e-19 Score=241.37 Aligned_cols=140 Identities=26% Similarity=0.393 Sum_probs=119.9
Q ss_pred CCCceeeecccccccCchHHHHHHHHhcccccceEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000396 1314 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1393 (1576)
Q Consensus 1314 ~~gV~G~Va~L~~V~d~~la~als~~lG~~~m~~VV~~t~~~ak~le~Ylke~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1393 (1576)
.+||+|.|++|++|++ +|..||+.++|++ ++.||+.|...|+.+..|+++.+ .||+||||
T Consensus 514 ~~Gv~G~v~~li~v~~-~y~~Aie~alG~~-l~~vVV~~~~~a~~~i~~lk~~~------------------~gr~tflp 573 (1163)
T COG1196 514 LPGVYGPVAELIKVKE-KYETALEAALGNR-LQAVVVENEEVAKKAIEFLKENK------------------AGRATFLP 573 (1163)
T ss_pred CCCccchHHHhcCcCh-HHHHHHHHHcccc-cCCeeeCChHHHHHHHHHHhhcC------------------CCccccCc
Confidence 8999999999999974 9999999999984 99999999999999999995544 99999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeecccccccccccccccCCCcchhHHHhhhccceeeccHH
Q 000396 1394 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1473 (1576)
Q Consensus 1394 Ld~Irp~~~~~~~~dpq~~l~lp~p~l~~g~~~~GfigyAvNlI~~d~~~~~~~t~~g~gLRetlf~~vFg~t~Vy~T~~ 1473 (1576)
|+.|+++... +.. ..+||+|||+|+|+||++|. .+|+++||+|.|++
T Consensus 574 l~~i~~~~~~--------------~~~----~~~g~~~~a~dli~~d~~~~------------~~~~~~l~~t~Iv~--- 620 (1163)
T COG1196 574 LDRIKPLRSL--------------KSD----AAPGFLGLASDLIDFDPKYE------------PAVRFVLGDTLVVD--- 620 (1163)
T ss_pred hhhhcccccc--------------ccc----cccchhHHHHHHhcCCHHHH------------HHHHHHhCCeEEec---
Confidence 9999985432 111 15899999999999999997 79999999999985
Q ss_pred hHHHHHhhccCc-----eEEecCCeeeccceEEeccCC
Q 000396 1474 DMIEAHTCIRHG-----AVSLDGGILKEDGIISLGCGN 1506 (1576)
Q Consensus 1474 ~m~~A~~~i~~~-----~VTLDG~lie~sG~~tgG~~~ 1506 (1576)
+++.|+.++... +|||||++++++|+||||++.
T Consensus 621 ~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~ 658 (1163)
T COG1196 621 DLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRN 658 (1163)
T ss_pred CHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCcc
Confidence 555577654333 999999999999999999554
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.77 E-value=8.1e-18 Score=221.81 Aligned_cols=140 Identities=21% Similarity=0.334 Sum_probs=117.2
Q ss_pred CCCceeeecccccccCchHHHHHHHHhcccccceEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000396 1314 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1393 (1576)
Q Consensus 1314 ~~gV~G~Va~L~~V~d~~la~als~~lG~~~m~~VV~~t~~~ak~le~Ylke~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1393 (1576)
.+||+|+|++|+.|+ +.|..|++.+||. .+..|||+|.+.|+.+.+|+++.+ .||+||||
T Consensus 520 ~~g~~g~l~dli~v~-~~y~~Aie~~lg~-~l~~ivv~~~~~a~~~i~~l~~~~------------------~gr~tflp 579 (1164)
T TIGR02169 520 IQGVHGTVAQLGSVG-ERYATAIEVAAGN-RLNNVVVEDDAVAKEAIELLKRRK------------------AGRATFLP 579 (1164)
T ss_pred CCCceecHHHhcCcC-HHHHHHHHHHhhh-hhCCEEECCHHHHHHHHHHHHhcC------------------CCCeeecc
Confidence 589999999999996 8999999999998 599999999999999999995544 89999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeecccccccccccccccCCCcchhHHHhhhccceeeccHH
Q 000396 1394 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1473 (1576)
Q Consensus 1394 Ld~Irp~~~~~~~~dpq~~l~lp~p~l~~g~~~~GfigyAvNlI~~d~~~~~~~t~~g~gLRetlf~~vFg~t~Vy~T~~ 1473 (1576)
||.|++... + ..+|+ ++|++++|+++|+|+++|. .++.++||++.|++
T Consensus 580 l~~~~~~~~-------------~-~~~~~---~~~~~~~~~~~i~~~~~~~------------~~~~~~lg~~~v~~--- 627 (1164)
T TIGR02169 580 LNKMRDERR-------------D-LSILS---EDGVIGFAVDLVEFDPKYE------------PAFKYVFGDTLVVE--- 627 (1164)
T ss_pred HhhcCCCCC-------------C-ccccc---CCCchHHHHHHccCcHHHH------------HHHHHHCCCeEEEc---
Confidence 999975211 0 11222 4789999999999999986 69999999999975
Q ss_pred hHHHHHhhccCc-eEEecCCeeeccceEEeccC
Q 000396 1474 DMIEAHTCIRHG-AVSLDGGILKEDGIISLGCG 1505 (1576)
Q Consensus 1474 ~m~~A~~~i~~~-~VTLDG~lie~sG~~tgG~~ 1505 (1576)
++..|..+.+.. +|||||++++++|+||||+.
T Consensus 628 ~l~~a~~~~~~~~~vTldG~~~~~~G~~tgG~~ 660 (1164)
T TIGR02169 628 DIEAARRLMGKYRMVTLEGELFEKSGAMTGGSR 660 (1164)
T ss_pred CHHHHHHHhcCCcEEEeCceeEcCCcCccCCCC
Confidence 556677766433 89999999999999999963
No 3
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.3e-16 Score=200.41 Aligned_cols=141 Identities=18% Similarity=0.243 Sum_probs=113.6
Q ss_pred CCCCceeeecccccccCchHHHHHHHHhcccccceEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEE
Q 000396 1313 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 1392 (1576)
Q Consensus 1313 ~~~gV~G~Va~L~~V~d~~la~als~~lG~~~m~~VV~~t~~~ak~le~Ylke~~i~~~~~~~~~~~s~~~~~~GR~tfL 1392 (1576)
.++|++|-.++||.|+ +.|-.|||+ ++. .++.||+.|++.|+.++.|+++++ .||+||+
T Consensus 614 ~i~Gf~GRLGDLg~Id-~kYDvAIsT-ac~-~LdyiVVdt~e~aq~cI~fl~~~n------------------LgraTFi 672 (1293)
T KOG0996|consen 614 RIPGFYGRLGDLGAID-EKYDVAIST-ACA-RLDYIVVDTIETAQECINFLKKNN------------------LGRATFI 672 (1293)
T ss_pred CCCccccccccccccc-hHHHHHHHH-hcc-ccceEEeccHHHHHHHHHHHHHcC------------------CCceeEE
Confidence 3899999999999995 799999999 444 499999999999999999996655 9999999
Q ss_pred ecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeeccccc-ccccccccccCCCcchhHHHhhhccceeecc
Q 000396 1393 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLD-DHHMHIRTSAGNGLRETLLYRLFGKLQVYKT 1471 (1576)
Q Consensus 1393 pLd~Irp~~~~~~~~dpq~~l~lp~p~l~~g~~~~GfigyAvNlI~~d-~~~~~~~t~~g~gLRetlf~~vFg~t~Vy~T 1471 (1576)
+||+|+.+..++. | +. +|=.+=+..+||.|. +++. ++||+++++|+|-
T Consensus 673 ~LDki~~~~~~l~----------~-i~------tpenvPRLfDLv~~~d~~~r------------~aFYfaLrdtLV~-- 721 (1293)
T KOG0996|consen 673 ILDKIKDHQKKLA----------P-IT------TPENVPRLFDLVKCKDEKFR------------PAFYFALRDTLVA-- 721 (1293)
T ss_pred ehHhhhhhhhccC----------C-CC------CCCCcchHhhhhccCCHHHH------------HHHHHHHhhhhhh--
Confidence 9999986555432 1 11 122223567899999 7776 7999999999995
Q ss_pred HHhHHHHHhhccC----c-eEEecCCeeeccceEEeccCC
Q 000396 1472 RKDMIEAHTCIRH----G-AVSLDGGILKEDGIISLGCGN 1506 (1576)
Q Consensus 1472 ~~~m~~A~~~i~~----~-~VTLDG~lie~sG~~tgG~~~ 1506 (1576)
+++++|.+..-+ + .|||||.||+.||+||||-..
T Consensus 722 -d~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~~ 760 (1293)
T KOG0996|consen 722 -DNLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGKK 760 (1293)
T ss_pred -cCHHHHHHHhhcCCCceEEEEecceeecccccccCCCCc
Confidence 677778866322 2 899999999999999977544
No 4
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.70 E-value=1.4e-17 Score=171.50 Aligned_cols=132 Identities=32% Similarity=0.438 Sum_probs=81.5
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeec---CCeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCC
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIA---EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGK 234 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~---~~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk 234 (1576)
|+++.||+||||||+|| .|++|.|.++.+ ...|.|.|||.||+.++|.. |..++.+.++...
T Consensus 1 y~~~~al~ElI~Ns~DA-----~a~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~---~~~~g~s~k~~~~------- 65 (137)
T PF13589_consen 1 YSPEDALRELIDNSIDA-----GATNIKISIDEDKKGERYIVIEDNGEGMSREDLES---FFRIGRSSKKSEK------- 65 (137)
T ss_dssp -SCTHHHHHHHHHHHHH-----HHHHEEEEEEEETTTTTEEEEEESSS---HHHHHH---HTTCHHTHHHHHH-------
T ss_pred CcHHHHHHHHHHHHHHc-----cCCEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH---hccccCCCCCchh-------
Confidence 67799999999999999 567788888875 47899999999999999976 5566666443211
Q ss_pred CCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhcccccCceeecCCCCCC--CcccccCCCCC
Q 000396 235 PPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFP--SKDEIADSPHG 312 (1576)
Q Consensus 235 ~~~~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~~v~~l~Ld~e~L~~~s~~~~ew~l~~~ir~p--s~eE~~~s~hG 312 (1576)
....+|+||+|+|+|+|++|+.++|+|++.+....+.++.++ +.. ...|.++...... ...++...+||
T Consensus 66 ---~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~~~--~~~----~~~~~i~~~~~~~~~~~~~~~~~~~G 136 (137)
T PF13589_consen 66 ---DRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDYDW--IEK----DESWDIPERESEEIQNESELDKSEHG 136 (137)
T ss_dssp ---HGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEEEE--ETT------------------------------
T ss_pred ---hhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEEec--ccc----cccccccccccccccccccccccccC
Confidence 133699999999999999999999999999887766655543 321 2345554432221 12344556788
Q ss_pred C
Q 000396 313 S 313 (1576)
Q Consensus 313 T 313 (1576)
|
T Consensus 137 t 137 (137)
T PF13589_consen 137 T 137 (137)
T ss_dssp -
T ss_pred C
Confidence 7
No 5
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=8e-16 Score=190.81 Aligned_cols=195 Identities=21% Similarity=0.279 Sum_probs=135.9
Q ss_pred CCCceeeecccccccCchHHHHHHHHhcccccceEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000396 1314 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1393 (1576)
Q Consensus 1314 ~~gV~G~Va~L~~V~d~~la~als~~lG~~~m~~VV~~t~~~ak~le~Ylke~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1393 (1576)
-..|.|+||+|++|.|..|+.||...+||+ +-.||+.|.+.++.|. +-|. ...|.|.||
T Consensus 518 rs~V~G~Va~Li~vkd~~~~tAle~~aGgr-LynvVv~te~tgkqLL---q~g~-----------------l~rRvTiIP 576 (1174)
T KOG0933|consen 518 RSKVKGLVAKLIKVKDRSYATALETTAGGR-LYNVVVDTEDTGKQLL---QRGN-----------------LRRRVTIIP 576 (1174)
T ss_pred HHHHHHHHHHHheeCcchHHHHHHHHhcCc-ceeEEeechHHHHHHh---hccc-----------------ccceeEEEe
Confidence 467999999999999999999999999995 7777778888888773 2232 346899999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeecccccccccccccccCCCcchhHHHhhhccceeeccHH
Q 000396 1394 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1473 (1576)
Q Consensus 1394 Ld~Irp~~~~~~~~dpq~~l~lp~p~l~~g~~~~GfigyAvNlI~~d~~~~~~~t~~g~gLRetlf~~vFg~t~Vy~T~~ 1473 (1576)
||+|+.+.-. |+.- +... ...++.+-.|++||.||+.+. .+..|+||++.|++
T Consensus 577 LnKI~s~~~s-----~~v~-----~~ak--~v~~~~v~~al~Li~yd~~l~------------~amefvFG~tlVc~--- 629 (1174)
T KOG0933|consen 577 LNKIQSFVLS-----PNVL-----QAAK--NVGNDNVELALSLIGYDDELK------------KAMEFVFGSTLVCD--- 629 (1174)
T ss_pred chhhhhccCC-----HhHH-----HHHH--HhcCchHHHHHHHhcCCHHHH------------HHHHHHhCceEEec---
Confidence 9999876432 1111 1110 024677888999999999887 69999999999986
Q ss_pred hHHHHHhh-----ccCceEEecCCeeeccceEEeccCCCceeecccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000396 1474 DMIEAHTC-----IRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNK 1548 (1576)
Q Consensus 1474 ~m~~A~~~-----i~~~~VTLDG~lie~sG~~tgG~~~~~~~F~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 1548 (1576)
+++.|+.. |.-..|||+|+...++|.+|||+++++-. .+.-+-..-+++.||+....+ .+++++|++
T Consensus 630 ~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~----~L~~l~~l~~~~~~~~~~q~e----l~~le~eL~ 701 (1174)
T KOG0933|consen 630 SLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGAD----LLRQLQKLKQAQKELRAIQKE----LEALERELK 701 (1174)
T ss_pred CHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCccc----HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 55557754 33337999999999999999999875432 111111122344444444333 344555666
Q ss_pred HHHHHHHHHHhhHHHH
Q 000396 1549 ALEKDLEKLKNSEDKF 1564 (1576)
Q Consensus 1549 ~l~~~~~~~~~~~~~~ 1564 (1576)
.|+....||..=++++
T Consensus 702 ~le~~~~kf~~l~~ql 717 (1174)
T KOG0933|consen 702 SLEAQSQKFRDLKQQL 717 (1174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666665555554
No 6
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.3e-14 Score=181.82 Aligned_cols=142 Identities=20% Similarity=0.255 Sum_probs=121.8
Q ss_pred CCCCceeeecccccccCchHHHHHHHHhcccccceEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEE
Q 000396 1313 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 1392 (1576)
Q Consensus 1313 ~~~gV~G~Va~L~~V~d~~la~als~~lG~~~m~~VV~~t~~~ak~le~Ylke~~i~~~~~~~~~~~s~~~~~~GR~tfL 1392 (1576)
..|||+|.|.+|+.-.-..|.-|++.+||. .|++|||.|...|+.|+.|+|+-+ .|-+|||
T Consensus 500 ~fPgv~GrviDLc~pt~kkyeiAvt~~Lgk-~~daIiVdte~ta~~CI~ylKeqr------------------~~~~TFl 560 (1141)
T KOG0018|consen 500 LFPGVYGRVIDLCQPTQKKYEIAVTVVLGK-NMDAIIVDTEATARDCIQYLKEQR------------------LEPMTFL 560 (1141)
T ss_pred hCCCccchhhhcccccHHHHHHHHHHHHhc-ccceEEeccHHHHHHHHHHHHHhc------------------cCCcccc
Confidence 479999999999999778999999999998 699999999999999999996655 8999999
Q ss_pred ecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeecccccccccccccccCCCcchhHHHhhhccceeeccH
Q 000396 1393 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTR 1472 (1576)
Q Consensus 1393 pLd~Irp~~~~~~~~dpq~~l~lp~p~l~~g~~~~GfigyAvNlI~~d~~~~~~~t~~g~gLRetlf~~vFg~t~Vy~T~ 1472 (1576)
||++|+... +.-.|++ +.| +-.|+|.|+|+++|+ .+..|++|+++|-+|+
T Consensus 561 Pld~i~v~~--------------~~e~lr~---~~g-~rlv~Dvi~ye~e~e------------ka~~~a~gn~Lvcds~ 610 (1141)
T KOG0018|consen 561 PLDSIRVKP--------------VNEKLRE---LGG-VRLVIDVINYEPEYE------------KAVQFACGNALVCDSV 610 (1141)
T ss_pred chhhhhcCc--------------ccccccC---cCC-eEEEEEecCCCHHHH------------HHHHHHhccceecCCH
Confidence 999998632 2234443 566 789999999999996 7999999999998766
Q ss_pred HhHHHHHhh-ccCc----eEEecCCeeeccceEEeccCC
Q 000396 1473 KDMIEAHTC-IRHG----AVSLDGGILKEDGIISLGCGN 1506 (1576)
Q Consensus 1473 ~~m~~A~~~-i~~~----~VTLDG~lie~sG~~tgG~~~ 1506 (1576)
++ |+.+ .|.+ +|||||-+|.++|.||||+..
T Consensus 611 e~---Ar~l~y~~~~r~k~valdGtl~~ksGlmsGG~s~ 646 (1141)
T KOG0018|consen 611 ED---ARDLAYGGEIRFKVVALDGTLIHKSGLMSGGSSG 646 (1141)
T ss_pred HH---HHHhhhcccccceEEEeeeeEEeccceecCCccC
Confidence 65 8755 3333 899999999999999999877
No 7
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.5e-13 Score=170.22 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=108.4
Q ss_pred CCCCceeeecccccccCchHHHHHHHHhcccccceEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEE
Q 000396 1313 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 1392 (1576)
Q Consensus 1313 ~~~gV~G~Va~L~~V~d~~la~als~~lG~~~m~~VV~~t~~~ak~le~Ylke~~i~~~~~~~~~~~s~~~~~~GR~tfL 1392 (1576)
...||+|+|..|+.|+ +.+-+|++..+|.+ +-.||+.|.+.|-.|.+-+ ++-+.||.|||
T Consensus 520 k~ngv~G~v~eL~~v~-~~f~tavEvtaGNs-LF~iVVdndevATkIl~~~------------------n~m~~GrVTF~ 579 (1200)
T KOG0964|consen 520 KPNGVFGTVYELIKVP-NKFKTAVEVTAGNS-LFNIVVDNDEVATKILRKL------------------NKMKGGRVTFM 579 (1200)
T ss_pred cccccceehhhhhcCC-HHHHhHHhhhcccc-eEEEEecccHHHHHHHHHH------------------HhccCCeeEEe
Confidence 3589999999999996 69999999988885 6677777777777775444 34457999999
Q ss_pred ecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeecccccccccccccccCCCcchhHHHhhhccceeeccH
Q 000396 1393 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTR 1472 (1576)
Q Consensus 1393 pLd~Irp~~~~~~~~dpq~~l~lp~p~l~~g~~~~GfigyAvNlI~~d~~~~~~~t~~g~gLRetlf~~vFg~t~Vy~T~ 1472 (1576)
|||.|++....+ |.-++. ---..-|.|+|+|. .+|..|||+|.|.
T Consensus 580 PLNrl~~r~v~y-------------p~~sda-------iPli~kl~y~p~fd------------ka~k~Vfgktivc--- 624 (1200)
T KOG0964|consen 580 PLNRLKARDVEY-------------PKDSDA-------IPLISKLRYEPQFD------------KALKHVFGKTIVC--- 624 (1200)
T ss_pred ecccCchhhccC-------------CCCCCc-------cchHHHhCcchhhH------------HHHHHHhCceEEe---
Confidence 999999833322 222221 11234678999996 7999999999997
Q ss_pred HhHHHHHhhccCc---eEEecCCeeeccceEEeccCC
Q 000396 1473 KDMIEAHTCIRHG---AVSLDGGILKEDGIISLGCGN 1506 (1576)
Q Consensus 1473 ~~m~~A~~~i~~~---~VTLDG~lie~sG~~tgG~~~ 1506 (1576)
.+|.+|.++.... .|||+||.+...|+||||+..
T Consensus 625 rdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D 661 (1200)
T KOG0964|consen 625 RDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYED 661 (1200)
T ss_pred ccHHHHHHHHHhcCCCeEEeccceecccCCccccchh
Confidence 5777788776554 899999999999999999875
No 8
>PRK05218 heat shock protein 90; Provisional
Probab=99.47 E-value=2.4e-12 Score=161.38 Aligned_cols=133 Identities=18% Similarity=0.245 Sum_probs=89.7
Q ss_pred cccCCCHH-HHhhCCC-CC-CHHHHHHHHhhcchhcccc-------------CCCceEEEEEEeecCCeEEEEECCCCCC
Q 000396 142 WDLTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWT-------------NAKNERRLISVNIAEDKISVFDTGPGMD 205 (1576)
Q Consensus 142 ~dL~P~~~-lL~~l~~-~Y-sl~sALAELVDNSIDA~~~-------------Na~A~rI~I~I~~~~~~I~I~DNG~GMs 205 (1576)
+.+.-++. +|..++. -| +...+|+|||.||+||..+ +....+|.|.++-++..|.|.|||+||+
T Consensus 6 ~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~GMt 85 (613)
T PRK05218 6 GEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGIGMT 85 (613)
T ss_pred eehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCCCCC
Confidence 34444555 4444444 35 6899999999999999532 1122345555555566799999999999
Q ss_pred hHhHhHhhhccccccchhccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCC-CceEEEEEEe
Q 000396 206 STDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKV-SKEVYTLHLE 278 (1576)
Q Consensus 206 ~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~~~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~g-s~~v~~l~Ld 278 (1576)
.+|+.. .||+.+.|..+... ..+.+........+|+||+|+. ++|.++++++|.||+.+ ....+.|..+
T Consensus 86 ~eel~~--~l~~ia~Sg~~~f~-~k~~~~~~~~~~~iG~fGiGf~-S~f~va~~v~V~Sr~~~~~~~~~~w~~~ 155 (613)
T PRK05218 86 REEVIE--NLGTIAKSGTKEFL-EKLKGDQKKDSQLIGQFGVGFY-SAFMVADKVTVITRSAGPAAEAVRWESD 155 (613)
T ss_pred HHHHHH--HHHhhccccchhHH-HHhhcccccccccccccCcCch-hhhhccCEEEEEEcCCCCCCceEEEEEe
Confidence 999975 67777766332110 0111111123568999999984 79999999999999977 5556677554
No 9
>PRK14083 HSP90 family protein; Provisional
Probab=99.45 E-value=1.8e-12 Score=161.59 Aligned_cols=293 Identities=17% Similarity=0.202 Sum_probs=174.7
Q ss_pred CCHH-HHhhCCC-CC-CHHHHHHHHhhcchhccccCCC-----ceEEEEEE-eecCCeEEEEECCCCCChHhHhHhhhcc
Q 000396 146 PDTD-LLRELPE-DY-TFETALADLIDNSLQAVWTNAK-----NERRLISV-NIAEDKISVFDTGPGMDSTDENSIVKWG 216 (1576)
Q Consensus 146 P~~~-lL~~l~~-~Y-sl~sALAELVDNSIDA~~~Na~-----A~rI~I~I-~~~~~~I~I~DNG~GMs~deL~~~~~wG 216 (1576)
-++. +|..++. -| +...+|+|||.||+||...... ..+|.|.+ +.+...|+|.|||.||+.+++.+ .||
T Consensus 7 ae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~~~~l~I~DnGiGmt~eel~~--~l~ 84 (601)
T PRK14083 7 VDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAGGGTLIVEDNGIGLTEEEVHE--FLA 84 (601)
T ss_pred HhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCCCcEEEEEeCCCCCCHHHHHH--HHh
Confidence 3444 5555555 35 6899999999999999643100 12566666 44578899999999999999976 689
Q ss_pred ccccchhccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhcccccCceeecC
Q 000396 217 KMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNG 296 (1576)
Q Consensus 217 ~~g~S~~R~~~a~~~ggk~~~~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~~v~~l~Ld~e~L~~~s~~~~ew~l~~ 296 (1576)
++|.|.++... .+. .....+|+||+|+ .|+|.+|++++|.|+..+....+.|.-+ ++..|.+..
T Consensus 85 ~ig~S~k~~~~---~~~---~~~~~IG~FGIGf-~S~F~vad~v~V~Tr~~~~~~~~~W~~~---------~~g~y~i~~ 148 (601)
T PRK14083 85 TIGRSSKRDEN---LGF---ARNDFLGQFGIGL-LSCFLVADEIVVVSRSAKDGPAVEWRGK---------ADGTYSVRK 148 (601)
T ss_pred hhccchhhhhh---hcc---cccccccccccce-EEEEEecCEEEEEeccCCCCceEEEEEC---------CCCceEEEe
Confidence 99988665322 111 1245799999997 5999999999999999764445555432 233454432
Q ss_pred CCCCCCcccccCCCCCCeeEEEEeCCC--CCCcChhHHHHHHHhhcCCccccccccCCCCcccceEEEeCCe-ecccccC
Q 000396 297 GIRFPSKDEIADSPHGSFTKVEIWEPK--LKSLDVKPLGCKLKDIYFPYIQCDEISSTGKTTRPIEFQVNGI-DLAEVAG 373 (1576)
Q Consensus 297 ~ir~ps~eE~~~s~hGTFT~VVI~elk--~~~~~i~~Lkr~La~IYh~fL~~d~ls~~gk~i~pIei~Vng~-~L~~Ieg 373 (1576)
. + .+ ..++|| +|++.-.. .......++++ |..-|..|+. .++..+|+. -.+|.. +||.-..
T Consensus 149 ~---~-~~---~~~~GT--~I~L~l~~d~~~~~~~~~i~~-li~~ys~~i~-~pI~l~~~~-----~~iN~~~~lW~~~~ 212 (601)
T PRK14083 149 L---E-TE---RAEPGT--TVYLRPRPDAEEWLERETVEE-LAKKYGSLLP-VPIRVEGEK-----GGVNETPPPWTRDY 212 (601)
T ss_pred C---C-CC---CCCCCC--EEEEEecCchhhhccHHHHHH-HHHHHhccCC-CCcccCCce-----eeecCCCCCccCCc
Confidence 1 0 01 124888 77776432 12333344444 4477777776 333333321 134433 3443222
Q ss_pred Ccee--ee---ccc--ccCCCcceEEEEEeeeccccccCCCCCCCCccccEEEEEEEcccCCCCCchhHHHHHhhhcCCc
Q 000396 374 GEVA--IT---NMH--SCNGPDFILQLHFSLRQASATTNSPGSRPSKEANARLKFVYFPVTEEGESIDIIMNKLISEGCV 446 (1576)
Q Consensus 374 ~~v~--~~---~l~--~~~g~~f~fel~~~v~~~~~~l~~Pg~~~~~~g~V~g~~~YfPf~~~kEt~p~~~~~l~~~g~~ 446 (1576)
..++ .+ ..| ..+.++ .+-+|+.+ ++ +...|.++|.|....-.
T Consensus 213 ~eit~~~eey~~Fyk~~~~~~P-l~~ih~~~-------------e~--~~~~~~Ly~iP~~~~~~--------------- 261 (601)
T PRK14083 213 PDPETRREALLAYGEELLGFTP-LDVIPLDV-------------PS--GGLEGVAYVLPYAVSPA--------------- 261 (601)
T ss_pred cccCccHHHHHHHHHHhcCCCc-hheeeecc-------------cc--hhheEEEEecCCCCCcc---------------
Confidence 2211 11 111 111222 23456644 33 45688888878643110
Q ss_pred cccccccccccccccccccccccccccccccchhhccccchhhHHHhhceeeEeeeCCCCCCCCCCcccccccchHHHHH
Q 000396 447 AAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIAL 526 (1576)
Q Consensus 447 ~~~~fe~f~~vsvrw~GRLip~~~~~~L~fm~~~~krg~k~~~~~~~~~Rvkg~l~~~~~F~vT~nK~~l~~~~~~~~~L 526 (1576)
.+ .++.||=+.-||.+- ++ .++.+|.+=|+|.++.++ .+.|-|+..|-+ ++....+
T Consensus 262 ----~~--~~v~LY~~rVfI~d~---------------~~-~lLP~wl~FvrGVVDS~D-LpLNvSRE~LQ~-~~~l~~i 317 (601)
T PRK14083 262 ----AR--RKHRVYLKRMLLSEE---------------AE-NLLPDWAFFVRCVVNTDE-LRPTASREALYE-DDALAAV 317 (601)
T ss_pred ----cc--CceEEEeeeeEeecc---------------hh-hhhHHHHHHheeeeecCC-CCCccCHHHHcc-CHHHHHH
Confidence 11 246666666777652 11 255599999999999865 899999988854 4444444
Q ss_pred H
Q 000396 527 K 527 (1576)
Q Consensus 527 ~ 527 (1576)
+
T Consensus 318 r 318 (601)
T PRK14083 318 R 318 (601)
T ss_pred H
Confidence 4
No 10
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=99.35 E-value=3.3e-12 Score=127.33 Aligned_cols=117 Identities=25% Similarity=0.323 Sum_probs=96.4
Q ss_pred CCceeeecccccccCchHHHHHHHHhcccccceEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEec
Q 000396 1315 EDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICL 1394 (1576)
Q Consensus 1315 ~gV~G~Va~L~~V~d~~la~als~~lG~~~m~~VV~~t~~~ak~le~Ylke~~i~~~~~~~~~~~s~~~~~~GR~tfLpL 1394 (1576)
+||+|.|++|++| +++|..|++++||. .|++|||+|.+.|..+.+++++.+ .||.+|+||
T Consensus 2 ~gv~G~l~dli~v-~~~~~~Ave~~LG~-~l~~iVV~~~~~a~~~i~~l~~~~------------------~gr~~~i~l 61 (120)
T PF06470_consen 2 PGVLGRLADLIEV-DPKYEKAVEAALGG-RLQAIVVEDEETAKKIIEFLKENK------------------LGRATFIPL 61 (120)
T ss_dssp TTEEEEGGGSEEE-SGGGHHHHHHHHGG-GGGSEEESSHHHHHHHHHHHHHTT------------------SCEEEEEET
T ss_pred CCeeeeHHhceec-CHHHHHHHHHHHHH-hhceEEECcHHHHHHHHHHHhhcc------------------CCeEEEEEC
Confidence 6999999999999 78999999999998 599999999999999999996554 899999999
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeecccc-cccccccccccCCCcchhHHHhhhccceeeccHH
Q 000396 1395 EGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNL-DDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1473 (1576)
Q Consensus 1395 d~Irp~~~~~~~~dpq~~l~lp~p~l~~g~~~~GfigyAvNlI~~-d~~~~~~~t~~g~gLRetlf~~vFg~t~Vy~T~~ 1473 (1576)
+.+++..... ..+. ..++|.+.+++|+|+| |+++. .++.++||++.|++
T Consensus 62 ~~~~~~~~~~--------------~~~~-~~~~~~~~~l~d~i~~~d~~~~------------~~~~~llg~~~vv~--- 111 (120)
T PF06470_consen 62 DKIRSRSSAS--------------SADQ-IRPPGGAGPLIDLIEFPDEEYR------------PALEFLLGDVVVVD--- 111 (120)
T ss_dssp TTTGGGTTSC--------------CCGG-HHSTTSEEEGGGGEEESCGGGH------------HHHHHHHTTEEEES---
T ss_pred cccccccccc--------------chhh-ccCCcchHHHHHhcccCcHHHH------------HHHHHHcCCEEEEC---
Confidence 9997643221 0000 0047899999999999 77886 69999999999986
Q ss_pred hHHHHHhh
Q 000396 1474 DMIEAHTC 1481 (1576)
Q Consensus 1474 ~m~~A~~~ 1481 (1576)
++++|+.+
T Consensus 112 ~l~~A~~l 119 (120)
T PF06470_consen 112 DLEEARKL 119 (120)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHh
Confidence 55557754
No 11
>PTZ00130 heat shock protein 90; Provisional
Probab=99.28 E-value=1.1e-11 Score=156.65 Aligned_cols=203 Identities=18% Similarity=0.248 Sum_probs=125.5
Q ss_pred cccCC--ceEEEccCCCcceeeccccccCcCceEEEEEecCCcccccccccccccCCCHH-HHhhCCC-CC-CHHHHHHH
Q 000396 92 NWNGG--NLYVEDANLNKISDTINFEMFEPSKCHILKLYDGSGEIAKTFENMWDLTPDTD-LLRELPE-DY-TFETALAD 166 (1576)
Q Consensus 92 ~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~n~~dL~P~~~-lL~~l~~-~Y-sl~sALAE 166 (1576)
||-+. ..|.++--++..-...+ .....+-.+|--+.+|+. ++.....+.+.-.+. +|..+.. -| +...+|+|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~e~~~FQaEv~~Lldiii~sLYS~keIFLRE 95 (814)
T PTZ00130 19 NWVPQLCNVLCESDEGKSEEKEEK-EEVKKDRDNIPEIEDGEK--PTSGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRE 95 (814)
T ss_pred cchhhhCceeecCCCCcccCCCCc-chhhcccccCcccccCCC--CCcccceeehHHHHHHHHHHHhhccCCCCCceeeh
Confidence 45544 34444444444332222 122233445656666666 455555677777777 4443333 46 68899999
Q ss_pred Hhhcchhcccc-------C----CCceEEEEEEee--cCCeEEEEECCCCCChHhHhHhhhccccccchhccccccccCC
Q 000396 167 LIDNSLQAVWT-------N----AKNERRLISVNI--AEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGG 233 (1576)
Q Consensus 167 LVDNSIDA~~~-------N----a~A~rI~I~I~~--~~~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~gg 233 (1576)
||.||+||..+ + .....+.|+|.. ++..|+|.|||+|||.+|+.+ +||+++.|..+..-. .+++
T Consensus 96 LISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eEl~~--nLgTIA~Sgt~~F~~-~l~~ 172 (814)
T PTZ00130 96 LISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLIN--NLGTIAKSGTSNFLE-AISK 172 (814)
T ss_pred HhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHHHHH--HhhhhcccccHHHHH-Hhhc
Confidence 99999999641 1 011234555554 477899999999999999976 899998874432210 1111
Q ss_pred CCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhcccccCceeecCCCCCCCcccccCCCCCC
Q 000396 234 KPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIADSPHGS 313 (1576)
Q Consensus 234 k~~~~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~~v~~l~Ld~e~L~~~s~~~~ew~l~~~ir~ps~eE~~~s~hGT 313 (1576)
.......||+||+|+ .++|.++++++|.||..+.. .+.|.-+ ++..|.+....+. ...++||
T Consensus 173 -~~~~~~lIGQFGVGF-YSaFmVAdkV~V~Trs~~~~-~~~W~s~---------g~g~y~I~e~~~~------~~~~rGT 234 (814)
T PTZ00130 173 -SGGDMSLIGQFGVGF-YSAFLVADKVIVYTKNNNDE-QYIWEST---------ADAKFTIYKDPRG------STLKRGT 234 (814)
T ss_pred -cCCCcccccccccch-hheeeecCEEEEEEcCCCCc-eEEEEEC---------CCCcEEEEECCCC------CCCCCCc
Confidence 011256899999996 69999999999999987744 4555422 3556766532111 1124899
Q ss_pred eeEEEEe
Q 000396 314 FTKVEIW 320 (1576)
Q Consensus 314 FT~VVI~ 320 (1576)
+|++.
T Consensus 235 --~I~Lh 239 (814)
T PTZ00130 235 --RISLH 239 (814)
T ss_pred --EEEEE
Confidence 66654
No 12
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.28 E-value=9.1e-12 Score=156.67 Aligned_cols=119 Identities=24% Similarity=0.219 Sum_probs=94.3
Q ss_pred ccCCCHHHHhhCCC-CCCHHHHHHHHhhcchhccccCCCceEEEEEEeecC-CeEEEEECCCCCChHhHhHh-hhccccc
Q 000396 143 DLTPDTDLLRELPE-DYTFETALADLIDNSLQAVWTNAKNERRLISVNIAE-DKISVFDTGPGMDSTDENSI-VKWGKMG 219 (1576)
Q Consensus 143 dL~P~~~lL~~l~~-~Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~-~~I~I~DNG~GMs~deL~~~-~~wG~~g 219 (1576)
.|+|++...++.|+ ...+.+||.|||+||||| +|++|.|.+...+ ..|.|.|||+||+++||.-+ .++++.
T Consensus 6 ~L~~~l~nqIAAGEVIerPaSVVKELVENSlDA-----GAt~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTS- 79 (638)
T COG0323 6 QLPPDLVNQIAAGEVIERPASVVKELVENSLDA-----GATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATS- 79 (638)
T ss_pred eCCHHHHHHhcccceeecHHHHHHHHHhccccc-----CCCEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccc-
Confidence 46777778888888 789999999999999999 8999888888764 56999999999999999642 222221
Q ss_pred cchhccccccccCCCCCCCCCCcccccc-chhhhhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000396 220 ASLHRASKAQGIGGKPPYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1576)
Q Consensus 220 ~S~~R~~~a~~~ggk~~~~~~~iGrFGv-GlK~AsfsLG~~ltV~SK~~gs~~v~~l~Ld~ 279 (1576)
++.. ......+-.||+ |.++||++-.++++|.|++.+....+++.++.
T Consensus 80 ----------KI~~--~~DL~~I~TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g 128 (638)
T COG0323 80 ----------KIAS--LEDLFRIRTLGFRGEALASIASVSRLTITSRTAEASEGTQIYAEG 128 (638)
T ss_pred ----------cCCc--hhHHHHhhccCccHHHHHHHHhhheeEEEeecCCcCceEEEEecC
Confidence 1111 112346778899 99999999999999999988888888887775
No 13
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=5.6e-11 Score=146.22 Aligned_cols=156 Identities=18% Similarity=0.265 Sum_probs=106.0
Q ss_pred cccCCCHH-HHhhCCC-CC-CHHHHHHHHhhcchhccccC-------C------CceEEEEEEeecCCeEEEEECCCCCC
Q 000396 142 WDLTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWTN-------A------KNERRLISVNIAEDKISVFDTGPGMD 205 (1576)
Q Consensus 142 ~dL~P~~~-lL~~l~~-~Y-sl~sALAELVDNSIDA~~~N-------a------~A~rI~I~I~~~~~~I~I~DNG~GMs 205 (1576)
+.+..++. +|..+.. -| +-...|+|||.||-||.-+- . ..-+|.|.++-++..++|.|||+|||
T Consensus 7 ~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGIGMT 86 (623)
T COG0326 7 RGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGIGMT 86 (623)
T ss_pred hhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCCCCCC
Confidence 34445555 4443333 46 58899999999999995221 1 12344444444568999999999999
Q ss_pred hHhHhHhhhccccccchhccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhc
Q 000396 206 STDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRC 285 (1576)
Q Consensus 206 ~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~~~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~~v~~l~Ld~e~L~~~ 285 (1576)
++|+.+ ..|+++-|..+... ..+++.. .+..-||+||+|+ .+||..+++|+|.|+..++...+.|.-+
T Consensus 87 ~~Ev~~--~LgTIAkSgT~~F~-~~l~~~~-~~~~lIGQFGVGF-YSaFmVAdkV~V~T~~~~~~~~~~W~S~------- 154 (623)
T COG0326 87 KDEVIE--NLGTIAKSGTKEFL-ESLSEDQ-KDSDLIGQFGVGF-YSAFMVADKVTVITRSAGEDEAYHWESD------- 154 (623)
T ss_pred HHHHHH--HHHHhhhccHHHHH-HHhcccc-ccccccccccchh-hheeeeeeeEEEEeccCCCCcceEEEEc-------
Confidence 999976 78999888655332 1222222 4567899999997 5899999999999999998877766433
Q ss_pred ccccCceeecCCCCCCCcccccCCC-CCCeeEEEEeCC
Q 000396 286 SDAELTWRTNGGIRFPSKDEIADSP-HGSFTKVEIWEP 322 (1576)
Q Consensus 286 s~~~~ew~l~~~ir~ps~eE~~~s~-hGTFT~VVI~el 322 (1576)
++++|.+..... .+ +|| +|++.=.
T Consensus 155 --g~g~ytv~~~~~---------~~~~GT--~I~L~Lk 179 (623)
T COG0326 155 --GEGEYTVEDIDK---------EPRRGT--EITLHLK 179 (623)
T ss_pred --CCCceEEeeccC---------CCCCCc--EEEEEEC
Confidence 456676643322 22 599 6665543
No 14
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.16 E-value=1.2e-10 Score=135.64 Aligned_cols=118 Identities=21% Similarity=0.162 Sum_probs=80.5
Q ss_pred ccCCCHHHHhhCCC-CCCHHHHHHHHhhcchhccccCCCceEEEEEEeecCC-eEEEEECCCCCChHhHhHhhhcccccc
Q 000396 143 DLTPDTDLLRELPE-DYTFETALADLIDNSLQAVWTNAKNERRLISVNIAED-KISVFDTGPGMDSTDENSIVKWGKMGA 220 (1576)
Q Consensus 143 dL~P~~~lL~~l~~-~Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~-~I~I~DNG~GMs~deL~~~~~wG~~g~ 220 (1576)
.|.|++....+.++ .+++..||.|||+||+|| +|++|.|.+..+.. .|.|.|||.||+.+++..+ +....
T Consensus 5 ~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA-----~a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~---~~~~~ 76 (312)
T TIGR00585 5 PLPPELVNKIAAGEVIERPASVVKELVENSLDA-----GATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLA---CERHA 76 (312)
T ss_pred ECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHC-----CCCEEEEEEEeCCEEEEEEEecCCCCCHHHHHHH---hhCCC
Confidence 35666665555555 789999999999999999 67888888766543 5999999999999999763 22222
Q ss_pred chhccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEee-CCCceEEEEE
Q 000396 221 SLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKT-KVSKEVYTLH 276 (1576)
Q Consensus 221 S~~R~~~a~~~ggk~~~~~~~iGrFGvGlK~AsfsLG~~ltV~SK~-~gs~~v~~l~ 276 (1576)
+.+-... .........|++|.| +|+++...+++|.|++ ++....+.+.
T Consensus 77 tsk~~~~------~~~~~~~~~G~rG~a--l~si~~~s~~~i~S~~~~~~~~~~~~~ 125 (312)
T TIGR00585 77 TSKIQSF------EDLERIETLGFRGEA--LASISSVSRLTITTKTSAADGLAWQAL 125 (312)
T ss_pred cCCCCCh------hHhhcccccCccchH--HHHHHhhCcEEEEEeecCCCcceEEEE
Confidence 2110000 001123455666665 5888888899999998 6666665554
No 15
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.12 E-value=2.2e-10 Score=144.39 Aligned_cols=119 Identities=21% Similarity=0.186 Sum_probs=83.9
Q ss_pred ccCCCHHHHhhCCC-CCCHHHHHHHHhhcchhccccCCCceEEEEEEeec-CCeEEEEECCCCCChHhHhHhhhcccccc
Q 000396 143 DLTPDTDLLRELPE-DYTFETALADLIDNSLQAVWTNAKNERRLISVNIA-EDKISVFDTGPGMDSTDENSIVKWGKMGA 220 (1576)
Q Consensus 143 dL~P~~~lL~~l~~-~Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~-~~~I~I~DNG~GMs~deL~~~~~wG~~g~ 220 (1576)
.|++++...++.++ ..++.++|.||||||+|| +|++|.|.+..+ ...|.|.|||+||+.+++..+.. ..+
T Consensus 5 ~L~~~v~~~IaAgevI~~~~svvkElveNsiDA-----gat~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~---~~~ 76 (617)
T PRK00095 5 LLPPQLANQIAAGEVVERPASVVKELVENALDA-----GATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALA---RHA 76 (617)
T ss_pred ECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhC-----CCCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhh---ccC
Confidence 45666666677777 689999999999999999 789999988644 35899999999999999975322 111
Q ss_pred chhccccccccCC-CCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 221 SLHRASKAQGIGG-KPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 221 S~~R~~~a~~~gg-k~~~~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
+.+ +.. ...+....+|+.|.| +||++..++++|.|++.++...+.+.+.
T Consensus 77 tsK-------i~~~~dl~~~~t~GfrGeA--L~sI~~vs~l~i~s~~~~~~~~~~~~~~ 126 (617)
T PRK00095 77 TSK-------IASLDDLEAIRTLGFRGEA--LPSIASVSRLTLTSRTADAAEGWQIVYE 126 (617)
T ss_pred CCC-------CCChhHhhccccCCcchhH--HHhhhhceEEEEEEecCCCCceEEEEec
Confidence 111 000 011122345555554 5788888899999999876666666543
No 16
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=98.98 E-value=1.2e-09 Score=138.13 Aligned_cols=128 Identities=24% Similarity=0.286 Sum_probs=87.0
Q ss_pred ccCCCHH-HHhhCCC-CC-CHHHHHHHHhhcchhcccc-------CC----CceEEEEEEee--cCCeEEEEECCCCCCh
Q 000396 143 DLTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWT-------NA----KNERRLISVNI--AEDKISVFDTGPGMDS 206 (1576)
Q Consensus 143 dL~P~~~-lL~~l~~-~Y-sl~sALAELVDNSIDA~~~-------Na----~A~rI~I~I~~--~~~~I~I~DNG~GMs~ 206 (1576)
.+...+. +|..+.. -| +....|+|||.||.||..+ +. ....+.|++.. +...++|.|||.||+.
T Consensus 6 ~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt~ 85 (701)
T PTZ00272 6 AFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTK 85 (701)
T ss_pred ecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCCH
Confidence 3444455 3333333 45 4688899999999999532 10 12235565554 4578999999999999
Q ss_pred HhHhHhhhccccccchhccc-cccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 207 TDENSIVKWGKMGASLHRAS-KAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 207 deL~~~~~wG~~g~S~~R~~-~a~~~ggk~~~~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
+||.+ +||+++.|..+.. .+.. . ......+|+||+|+ .++|.++++++|.||..+. ..+.|..+
T Consensus 86 edl~~--~LgtIa~SGt~~f~~~~~--~--~~~~~~iGqFGvGf-yS~Fmvad~V~V~Srs~~~-~~~~W~s~ 150 (701)
T PTZ00272 86 ADLVN--NLGTIARSGTKAFMEALE--A--GGDMSMIGQFGVGF-YSAYLVADRVTVTSKNNSD-ESYVWESS 150 (701)
T ss_pred HHHHH--HhhhhhhcchHHHHHHhh--c--cCCccccCCCCcce-EEEEEeccEEEEEEecCCC-ceEEEEEC
Confidence 99976 7899887743321 1111 1 11256899999996 5899999999999998664 46677544
No 17
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.84 E-value=1.2e-08 Score=123.28 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=109.7
Q ss_pred HHhhCCC-CCCHHHHHHHHhhcchhccccCCCceEEEEEEeecCC-eEEEEECCCCCChHhHhHh-hhccccccchhccc
Q 000396 150 LLRELPE-DYTFETALADLIDNSLQAVWTNAKNERRLISVNIAED-KISVFDTGPGMDSTDENSI-VKWGKMGASLHRAS 226 (1576)
Q Consensus 150 lL~~l~~-~Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~-~I~I~DNG~GMs~deL~~~-~~wG~~g~S~~R~~ 226 (1576)
.-++.|+ ...+..||.|||.||+|| +++.|.|.+.-++- -+.|.|||.||-++||.-+ .+|.+.-.+ +.
T Consensus 17 NRIAAGEVI~RP~NAlKEliENSLDA-----~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~--kF- 88 (694)
T KOG1979|consen 17 NRIAAGEVIQRPVNALKELIENSLDA-----NSTSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTSKLT--KF- 88 (694)
T ss_pred hHhhccchhhchHHHHHHHHhccccC-----CCceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhhhcc--hh-
Confidence 3456666 568999999999999999 78887776666554 4778999999999999642 333332111 11
Q ss_pred cccccCCCCCCCCCCcccccc-chhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhcccccCceeecCCCCCCCccc
Q 000396 227 KAQGIGGKPPYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDE 305 (1576)
Q Consensus 227 ~a~~~ggk~~~~~~~iGrFGv-GlK~AsfsLG~~ltV~SK~~gs~~v~~l~Ld~e~L~~~s~~~~ew~l~~~ir~ps~eE 305 (1576)
.....+..||+ |.++||++-..+++|.||+++..++|+......++.. .| ..
T Consensus 89 ----------EDL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~~---------------~p--Kp 141 (694)
T KOG1979|consen 89 ----------EDLFSLSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMIA---------------TP--KP 141 (694)
T ss_pred ----------HHHHhhhhcCccHHHHhhhhheeEEEEEEeecCceeeeEEEeecccccc---------------CC--CC
Confidence 12346889999 9999999999999999999999998887654323211 11 01
Q ss_pred ccCCCCCCeeEEEEeCC--CC------CCcChhHHHHHHHhhcCCcccc
Q 000396 306 IADSPHGSFTKVEIWEP--KL------KSLDVKPLGCKLKDIYFPYIQC 346 (1576)
Q Consensus 306 ~~~s~hGTFT~VVI~el--k~------~~~~i~~Lkr~La~IYh~fL~~ 346 (1576)
. .+..|| .|.+.++ ++ .....++.++-+-.+-+|-||.
T Consensus 142 c-Agk~GT--~I~vedLFYN~~~Rrkal~~~~EE~~ki~dlv~ryAIHn 187 (694)
T KOG1979|consen 142 C-AGKQGT--IITVEDLFYNMPTRRKALRNHAEEYRKIMDLVGRYAIHN 187 (694)
T ss_pred c-cCCCce--EEEehHhhccCHHHHHHhcCcHHHHHHHHHHHHHHheeC
Confidence 1 234788 8888887 11 1345566666666666666673
No 18
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.73 E-value=3.4e-08 Score=117.24 Aligned_cols=109 Identities=26% Similarity=0.255 Sum_probs=81.8
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeec-C--CeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCC
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIA-E--DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGK 234 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~-~--~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk 234 (1576)
-++.+++.|||+||+||+-.+.=-..|.|.|... + -.+.|.|||.|++.+.+-+ -||.+= .|++
T Consensus 35 RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPk--vFGk~L-----------ygSK 101 (538)
T COG1389 35 RSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPK--VFGKML-----------YGSK 101 (538)
T ss_pred hHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHhHH--HHHHHh-----------ccch
Confidence 4799999999999999963321113455555542 3 3588999999999999965 466543 3455
Q ss_pred CCCCCCCccccccchhhhhhc----ccCEEEEEEeeCCCceEEEEEEeh
Q 000396 235 PPYLTPFFGMFGYGGPIASMH----LGRRALVSSKTKVSKEVYTLHLEK 279 (1576)
Q Consensus 235 ~~~~~~~iGrFGvGlK~Asfs----LG~~ltV~SK~~gs~~v~~l~Ld~ 279 (1576)
....+...|.+|+|.+.|.++ .|+.++|.|++.++..++.+.+-.
T Consensus 102 fh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~i 150 (538)
T COG1389 102 FHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKI 150 (538)
T ss_pred hhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEe
Confidence 556678999999999977765 899999999999887777665543
No 19
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.69 E-value=4.6e-07 Score=120.57 Aligned_cols=143 Identities=22% Similarity=0.309 Sum_probs=105.7
Q ss_pred CCCceeeecccccccCchHHHHHHHHhcccccceEEEecHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000396 1314 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1393 (1576)
Q Consensus 1314 ~~gV~G~Va~L~~V~d~~la~als~~lG~~~m~~VV~~t~~~ak~le~Ylke~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1393 (1576)
.+|++|.+++|+.++ +.|..|++..+|+ .+..||+.+.+.|..+..|+++. ..|+.+|+|
T Consensus 518 ~~~~~g~~~~li~~~-~~~~~a~~~~~g~-~~~~ivv~~~~~a~~~~~~l~~~------------------~~g~~~~l~ 577 (1179)
T TIGR02168 518 LSGILGVLSELISVD-EGYEAAIEAALGG-RLQAVVVENLNAAKKAIAFLKQN------------------ELGRVTFLP 577 (1179)
T ss_pred cCCCccchhceeeeC-hhHHHHHHHHHHH-HhcCeEECCHHHHHHHHHHhccc------------------CCCcEEEee
Confidence 478999999999995 7999999998887 58878999999888777788433 489999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeecccccccccccccccCCCcchhHHHhhhccceeeccHH
Q 000396 1394 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1473 (1576)
Q Consensus 1394 Ld~Irp~~~~~~~~dpq~~l~lp~p~l~~g~~~~GfigyAvNlI~~d~~~~~~~t~~g~gLRetlf~~vFg~t~Vy~T~~ 1473 (1576)
++.|+..... .+ ..+.++ ...|++++|.|++.|++.+. .++.+.++.+.++.
T Consensus 578 l~~i~~~~~~----~~------~~~~~~---~~~~~~~~~~dl~~~~~~~~------------~~~~~~~~~~~ivt--- 629 (1179)
T TIGR02168 578 LDSIKGTEIQ----GN------DREILK---NIEGFLGVAKDLVKFDPKLR------------KALSYLLGGVLVVD--- 629 (1179)
T ss_pred cccccccccc----cc------chhhcc---ccCchhHHHHHHhcccHhHH------------HHHHHHhCCceEeC---
Confidence 9999742110 00 001122 24689999999999998875 57788889877754
Q ss_pred hHHHHHhhc----cCc-eEEecCCeeeccceEEecc
Q 000396 1474 DMIEAHTCI----RHG-AVSLDGGILKEDGIISLGC 1504 (1576)
Q Consensus 1474 ~m~~A~~~i----~~~-~VTLDG~lie~sG~~tgG~ 1504 (1576)
.++.|.... .+| +||++|+++...|.+++|.
T Consensus 630 ~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~~ 665 (1179)
T TIGR02168 630 DLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGS 665 (1179)
T ss_pred CHHHHHHHHHHcCCCceEEecCCEEEcCCceEecCc
Confidence 455566543 234 8999998888888876664
No 20
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.52 E-value=2.3e-07 Score=114.86 Aligned_cols=106 Identities=21% Similarity=0.252 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHhhcchhccccCCCceEEEEEEee-cCCeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCC
Q 000396 157 DYTFETALADLIDNSLQAVWTNAKNERRLISVNI-AEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1576)
Q Consensus 157 ~Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~-~~~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~ 235 (1576)
.+++.+||.|||+||||| +|+.|.|.+.. +-+.|.|.|||+|+++.+..-+ +....+. .+.+
T Consensus 18 I~sl~sAVKELvENSiDA-----GAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l---~lkh~TS-------Ki~~-- 80 (672)
T KOG1978|consen 18 ITSLVSAVKELVENSIDA-----GATAIDIKVKDYGSDSIEVSDNGSGISATDFEGL---ALKHTTS-------KIVS-- 80 (672)
T ss_pred eccHHHHHHHHHhcCccc-----CCceeeEecCCCCcceEEEecCCCCCCccchhhh---hhhhhhh-------cccc--
Confidence 689999999999999999 79998888864 5688999999999999987531 1111110 0100
Q ss_pred CCCCCCcccccc-chhhhhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000396 236 PYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1576)
Q Consensus 236 ~~~~~~iGrFGv-GlK~AsfsLG~~ltV~SK~~gs~~v~~l~Ld~ 279 (1576)
-.+...+=.||+ |.++.++.--..++|.|++.+......|.+|.
T Consensus 81 f~Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh 125 (672)
T KOG1978|consen 81 FADLAVLFTLGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYDH 125 (672)
T ss_pred hhhhhhhhhhhhHHHHHHhhhhccceEEEEeeccCccceeEEEcc
Confidence 112334557788 88888887778899999998777777888875
No 21
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=98.45 E-value=1.2e-07 Score=115.99 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=107.1
Q ss_pred HhhCCCCCCHHHHHHHHhhcchhccccCCCceEEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccchhccccccc
Q 000396 151 LRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQG 230 (1576)
Q Consensus 151 L~~l~~~Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~ 230 (1576)
|++.....++..++.|||-||+|| +|+.|.|.|+...-++.|.|||.||+++||.. .|.-.++.+ .
T Consensus 13 lrSg~~~~sla~~VeElv~NSiDA-----~At~V~v~V~~~t~sv~ViDdG~G~~rdDl~~---lg~ry~TSK-~----- 78 (1142)
T KOG1977|consen 13 LRSGLAISSLAQCVEELVLNSIDA-----EATCVAVRVNMETFSVQVIDDGFGMGRDDLEK---LGNRYFTSK-C----- 78 (1142)
T ss_pred HhccchHHHHHHHHHHHHhhcccc-----CceEEEEEecCceeEEEEEecCCCccHHHHHH---HHhhhhhhh-c-----
Confidence 344444679999999999999999 89999999999999999999999999999974 444333321 0
Q ss_pred cCCCCCCCCCCcccccc-chhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhcccccCceeecCCCCCCCcccccCC
Q 000396 231 IGGKPPYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIADS 309 (1576)
Q Consensus 231 ~ggk~~~~~~~iGrFGv-GlK~AsfsLG~~ltV~SK~~gs~~v~~l~Ld~e~L~~~s~~~~ew~l~~~ir~ps~eE~~~s 309 (1576)
..-......-.||+ |.++|+++--+.+.|.|++.+....+... .+... ... ...+. +. ...
T Consensus 79 ---h~~ndl~~~~tyGfRGeALasIsd~s~l~v~skkk~r~~~~~~k----k~~~g---s~~-~~l~i------D~-~R~ 140 (1142)
T KOG1977|consen 79 ---HSVNDLENPRTYGFRGEALASISDMSSLVVISKKKNRTMKTFVK----KFQSG---SAL-KALEI------DV-TRA 140 (1142)
T ss_pred ---eeccccccccccccchhhhhhhhhhhhhhhhhhhcCCchhHHHH----HHhcc---ccc-eeccc------cc-ccc
Confidence 01112334567898 99999999999999999998865433211 11111 000 00000 01 112
Q ss_pred CCCCeeEEEEeCC----CCC--------CcChhHHHHHHH--hhcCCccc
Q 000396 310 PHGSFTKVEIWEP----KLK--------SLDVKPLGCKLK--DIYFPYIQ 345 (1576)
Q Consensus 310 ~hGTFT~VVI~el----k~~--------~~~i~~Lkr~La--~IYh~fL~ 345 (1576)
.+|| +|++.++ +++ ...++.+|+.+. .+.||-|.
T Consensus 141 ~sGT--tVtV~dlfY~lPVRRr~k~~~P~k~fe~Ik~~i~~i~lmHp~iS 188 (1142)
T KOG1977|consen 141 SSGT--TVTVYDLFYQLPVRRRLKCMDPRKEFEKIKQRIEAISLMHPSIS 188 (1142)
T ss_pred cCCc--EEEeHHhhhcchhhhhhhcCCHHHHHHHHHHHHHHHHhhcccee
Confidence 3788 7888887 221 356788888777 45577665
No 22
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.41 E-value=2e-06 Score=108.93 Aligned_cols=108 Identities=24% Similarity=0.315 Sum_probs=71.3
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..+|.|||+||+||.........|.|.+..... .|.|.|||.||+++++..+ |..+.+ +++..
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~I--Ferf~~-----------tSKf~ 112 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKV--FGKLLY-----------GSRFH 112 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHH--hhhhcc-----------ccccc
Confidence 48899999999999995222111156666665544 5899999999999999763 322211 11111
Q ss_pred CCCCCccccccchhhhhhc----ccCEEEEEEeeCCCceEE--EEEEeh
Q 000396 237 YLTPFFGMFGYGGPIASMH----LGRRALVSSKTKVSKEVY--TLHLEK 279 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~Asfs----LG~~ltV~SK~~gs~~v~--~l~Ld~ 279 (1576)
......|..|.|+.+|... .|..++|.|++.++...+ ++.++.
T Consensus 113 ~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~ 161 (795)
T PRK14868 113 AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDT 161 (795)
T ss_pred ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEec
Confidence 1124567889998765433 478899999998766554 555553
No 23
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.23 E-value=9.6e-06 Score=100.79 Aligned_cols=106 Identities=28% Similarity=0.351 Sum_probs=69.2
Q ss_pred HHHHHHHHhhcchhccccCCCceEEEEEEeec---C--CeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCC
Q 000396 160 FETALADLIDNSLQAVWTNAKNERRLISVNIA---E--DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGK 234 (1576)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~rI~I~I~~~---~--~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk 234 (1576)
+..+|.|||+||+||.........|.|.+... + ..|.|.|||.||+++++..+ |+.+.. +++
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~i--F~~f~~-----------~SK 103 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKV--FGKLLY-----------GSK 103 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHH--hhhhhc-----------ccc
Confidence 78999999999999963221112566666542 2 45889999999999999762 332111 111
Q ss_pred CCCCCCCccccccchhhhhh----cccCEEEEEEeeCCCceEEEEEEe
Q 000396 235 PPYLTPFFGMFGYGGPIASM----HLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 235 ~~~~~~~iGrFGvGlK~Asf----sLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
........|.+|+|++.+.. ..|..++|.|++.+....+.+.+.
T Consensus 104 ~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~ 151 (535)
T PRK04184 104 FHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELK 151 (535)
T ss_pred ccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEE
Confidence 11113456889999976432 246779999998776545555554
No 24
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.19 E-value=8e-06 Score=100.53 Aligned_cols=108 Identities=27% Similarity=0.307 Sum_probs=72.6
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeec-CC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~-~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~ 235 (1576)
.+..++.|||+||+||.........|.|.+... .+ .|.|.|||.||+.+++..+ |+.+.++ ++.
T Consensus 28 ~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~i--F~rf~~t-----------sK~ 94 (488)
T TIGR01052 28 SLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKV--FGKMLAG-----------SKF 94 (488)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhh--hhhcccc-----------Ccc
Confidence 588999999999999963321122566766542 33 6999999999999999752 3322211 121
Q ss_pred CCCCCCccccccchhhhhh----cccCEEEEEEeeCCCceEEEEEEeh
Q 000396 236 PYLTPFFGMFGYGGPIASM----HLGRRALVSSKTKVSKEVYTLHLEK 279 (1576)
Q Consensus 236 ~~~~~~iGrFGvGlK~Asf----sLG~~ltV~SK~~gs~~v~~l~Ld~ 279 (1576)
.......|.+|+|+..+.. ..|+.++|.|++.|+...+++.++.
T Consensus 95 ~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~i 142 (488)
T TIGR01052 95 HRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKI 142 (488)
T ss_pred ccccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEe
Confidence 1124456888999875332 3466799999998887766666553
No 25
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=7.4e-06 Score=97.73 Aligned_cols=108 Identities=25% Similarity=0.333 Sum_probs=72.3
Q ss_pred CHHHHHHHHhhcchhcccc-------C----CCceEEEEEE--eecCCeEEEEECCCCCChHhHhHhhhccccccchhc-
Q 000396 159 TFETALADLIDNSLQAVWT-------N----AKNERRLISV--NIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHR- 224 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~-------N----a~A~rI~I~I--~~~~~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R- 224 (1576)
+-..-|+|||-||-||--+ + .......|.| +-.+..+.|.|.|.||+.++|-+ +.|++..|...
T Consensus 95 NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edLi~--NLGTIAkSGTs~ 172 (785)
T KOG0020|consen 95 NKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDLIK--NLGTIAKSGTSE 172 (785)
T ss_pred hhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHHHH--hhhhhhcccHHH
Confidence 4566799999999999411 1 0122334444 44577899999999999999954 67777655221
Q ss_pred -cccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCC
Q 000396 225 -ASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVS 269 (1576)
Q Consensus 225 -~~~a~~~ggk~~~~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs 269 (1576)
..+.+..|.....-...||.||+|+ .++|-.++++.|+||+++.
T Consensus 173 Fl~Km~~~~~~~~~~~dlIGQFGVGF-YsAfLVAD~vvVtsKhNdD 217 (785)
T KOG0020|consen 173 FLEKMQDSGDSEGLMNDLIGQFGVGF-YSAFLVADRVVVTSKHNDD 217 (785)
T ss_pred HHHHhhccccchhhHHHHHHhcchhh-hhhhhhcceEEEEeccCCc
Confidence 1111111212222356799999997 4889999999999999764
No 26
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=97.97 E-value=1.4e-05 Score=101.67 Aligned_cols=104 Identities=23% Similarity=0.274 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHhhcchhccccCCCceEEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccc--hhccccccccCCC
Q 000396 157 DYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGAS--LHRASKAQGIGGK 234 (1576)
Q Consensus 157 ~Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~~I~I~DNG~GMs~deL~~~~~wG~~g~S--~~R~~~a~~~ggk 234 (1576)
...+...+.||||||+||... ..+++|.|.|.-+ +.|+|.|||+||+.+.... -|...+. ..+.. .|++
T Consensus 35 ~~gl~~lv~EivdNaiDe~~a-g~a~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~---~~~~~~E~v~t~lh----agsK 105 (631)
T PRK05559 35 TRGLHHLVQEVIDNSVDEALA-GHGKRIEVTLHAD-GSVSVRDNGRGIPVGIHPE---EGKSGVEVILTKLH----AGGK 105 (631)
T ss_pred Cchhhhhhhhhhccccchhhc-CCCCEEEEEEeCC-CcEEEEEcCCCCCcccccc---cCCcchheeeeecc----ccCc
Confidence 467999999999999999643 2578877777655 4899999999999887643 1111111 11111 1222
Q ss_pred CCC--CCCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000396 235 PPY--LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1576)
Q Consensus 235 ~~~--~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~ 270 (1576)
... .....|+.|+|++ +.-.+...++|.|++.+..
T Consensus 106 f~~~~yk~SgGl~GvGls-~vNalS~~l~V~s~r~g~~ 142 (631)
T PRK05559 106 FSNKAYKFSGGLHGVGVS-VVNALSSRLEVEVKRDGKV 142 (631)
T ss_pred cCCccccccCcccccchh-hhhhheeeEEEEEEeCCeE
Confidence 211 1256899999986 3445668899999987644
No 27
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=97.91 E-value=7.9e-05 Score=94.50 Aligned_cols=107 Identities=23% Similarity=0.306 Sum_probs=68.2
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeec-CC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~-~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~ 235 (1576)
.+.+++.|||+||+||.........|.|.+... .. .|.|.|||.||+++++..+ |+.+. .|++.
T Consensus 36 ~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~i--FerF~-----------atSK~ 102 (659)
T PRK14867 36 SMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKV--FGKML-----------AGSKM 102 (659)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhh--hcccc-----------ccCcc
Confidence 345899999999999963322123677776553 33 3999999999999999752 22211 11221
Q ss_pred CCCCCCccccccchhhhh----hcccCEEEEEEeeCCCc-eEEEEEEe
Q 000396 236 PYLTPFFGMFGYGGPIAS----MHLGRRALVSSKTKVSK-EVYTLHLE 278 (1576)
Q Consensus 236 ~~~~~~iGrFGvGlK~As----fsLG~~ltV~SK~~gs~-~v~~l~Ld 278 (1576)
.......|..|+|+..+. +..|..+.+.|+..+.. ....+.++
T Consensus 103 ~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~ 150 (659)
T PRK14867 103 HRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMS 150 (659)
T ss_pred cceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEE
Confidence 112356788899987655 34578889999985443 22334444
No 28
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=97.88 E-value=2.4e-05 Score=99.54 Aligned_cols=96 Identities=21% Similarity=0.199 Sum_probs=66.7
Q ss_pred CCHHHHHHHHhhcchh---ccccCCCceEEEEEEeecCCeEEEEECCCCCChHh--------HhHhhhccccccchhccc
Q 000396 158 YTFETALADLIDNSLQ---AVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTD--------ENSIVKWGKMGASLHRAS 226 (1576)
Q Consensus 158 Ysl~sALAELVDNSID---A~~~Na~A~rI~I~I~~~~~~I~I~DNG~GMs~de--------L~~~~~wG~~g~S~~R~~ 226 (1576)
..+.++|.||||||+| |. .|++|.|.|.-+ ++|+|.|||+||+.++ +.- -|+...++.
T Consensus 29 ~~~~~lv~ElvdNsiDE~~ag----~a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~--v~t~lhags---- 97 (625)
T TIGR01055 29 TRPNHLVQEVIDNSVDEALAG----FASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEV--ILTTLHAGG---- 97 (625)
T ss_pred CCcceeehhhhhcccchhhcC----CCCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHH--hhhcccccC----
Confidence 4578899999999999 62 588888888666 8899999999999887 332 122222111
Q ss_pred cccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000396 227 KAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1576)
Q Consensus 227 ~a~~~ggk~~~~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~ 270 (1576)
.+... .+ +...|+.|+|++ +.-.+.+.++|.|++.+..
T Consensus 98 ---K~~~~-~~-~~SgG~~GvGls-~vnalS~~l~v~~~r~g~~ 135 (625)
T TIGR01055 98 ---KFSNK-NY-HFSGGLHGVGIS-VVNALSKRVKIKVYRQGKL 135 (625)
T ss_pred ---CCCCC-cc-eecCCCcchhHH-HHHHhcCeEEEEEEECCeE
Confidence 11111 12 257899999975 3445667799999987754
No 29
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=2.6e-05 Score=96.05 Aligned_cols=129 Identities=20% Similarity=0.253 Sum_probs=88.0
Q ss_pred cccccCCCHHHHhhCCC--CCC-HHHHHHHHhhcchhcccc-------CCC--ceEEEEEEee--cCCeEEEEECCCCCC
Q 000396 140 NMWDLTPDTDLLRELPE--DYT-FETALADLIDNSLQAVWT-------NAK--NERRLISVNI--AEDKISVFDTGPGMD 205 (1576)
Q Consensus 140 n~~dL~P~~~lL~~l~~--~Ys-l~sALAELVDNSIDA~~~-------Na~--A~rI~I~I~~--~~~~I~I~DNG~GMs 205 (1576)
.++.+...++-|..+.. -|+ -+.=|+|||-||-||--+ +.. .....|++.. +...++|.|+|+|||
T Consensus 35 et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMT 114 (656)
T KOG0019|consen 35 ETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMT 114 (656)
T ss_pred cceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcC
Confidence 45666666664443322 354 578899999999999311 111 2334555544 467899999999999
Q ss_pred hHhHhHhhhccccccchh-ccccccc-cCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEE
Q 000396 206 STDENSIVKWGKMGASLH-RASKAQG-IGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLH 276 (1576)
Q Consensus 206 ~deL~~~~~wG~~g~S~~-R~~~a~~-~ggk~~~~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~~v~~l~ 276 (1576)
.+||-+ +.|++..|.. ...+++. .| ...+.+|.||+|+. .+|..+.+++|+||..+.. .+.|.
T Consensus 115 k~dLvn--nLGTIAkSGtK~Fmealkea~----ad~~~IGQFGvGFY-SaylVAdkV~V~tk~~~~e-~y~We 179 (656)
T KOG0019|consen 115 KEDLVN--NLGTIAKSGSKAFLEALKEAE----AESNLIGQFGVGFY-SAFMVADRVVVTTRHPADE-GLQWT 179 (656)
T ss_pred HHHHHh--hhhhhhhcccHHHHHHHHhcc----cchhhhhhcccchh-hhhhhhheeEEeeccCCCc-ceeee
Confidence 999965 6788776632 2223333 22 23568999999975 7889999999999998765 45553
No 30
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=97.76 E-value=4e-05 Score=97.10 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=63.8
Q ss_pred HHHHHHhhcchhccccCCCceEEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccc-hhccccccccCCCCCC--C
Q 000396 162 TALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGAS-LHRASKAQGIGGKPPY--L 238 (1576)
Q Consensus 162 sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~~I~I~DNG~GMs~deL~~~~~wG~~g~S-~~R~~~a~~~ggk~~~--~ 238 (1576)
..+.||||||+||.... .+++|.|.|.-++ +|+|.|||+||+.+.-. +.+.+ ..-.....-.|++... .
T Consensus 4 ~~v~ElvdNAiD~~~~g-~at~I~V~i~~~g-~I~V~DnG~GIp~~~h~------~~~~~~~e~v~~~lhag~kfd~~~~ 75 (594)
T smart00433 4 HLVDEIVDNAADEALAG-YMDTIKVTIDKDN-SISVEDNGRGIPVEIHP------KEKKYAPEVIFTVLHAGGKFDDDAY 75 (594)
T ss_pred EEEeeehhcccchhccC-CCCEEEEEEeCCC-eEEEEEeCCceeCCccC------cCCCCcHHHhhhhhcccCCCCCCCc
Confidence 35789999999995433 4888888877654 99999999999965322 11111 0000001112333321 1
Q ss_pred CCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000396 239 TPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1576)
Q Consensus 239 ~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~ 270 (1576)
....|+.|+|++ +.-.+...++|.|++.+..
T Consensus 76 k~s~G~~G~Gls-~vnalS~~l~v~~~~~g~~ 106 (594)
T smart00433 76 KVSGGLHGVGAS-VVNALSTEFEVEVARDGKE 106 (594)
T ss_pred cccCCcccchHH-HHHHhcCceEEEEEeCCcE
Confidence 347899999975 3445668999999998655
No 31
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=97.75 E-value=7.5e-05 Score=95.69 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=65.0
Q ss_pred CCHHHHHHHHhhcchhccccCCC-ceEEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccch-hccccccccCCCC
Q 000396 158 YTFETALADLIDNSLQAVWTNAK-NERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASL-HRASKAQGIGGKP 235 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~-A~rI~I~I~~~~~~I~I~DNG~GMs~deL~~~~~wG~~g~S~-~R~~~a~~~ggk~ 235 (1576)
..+...+.||||||+|... ++ +++|.|.|.- .+.|+|.|||+||+.+- ..+.+.+. .-.....-.|++.
T Consensus 29 ~gl~~vv~Elv~NaiDe~~--ag~a~~I~V~i~~-~g~I~V~DnG~GIp~~~------h~~~ki~~~e~i~~~l~ag~kf 99 (654)
T TIGR01059 29 TGLHHLVYEVVDNSIDEAM--AGYCDTINVTIND-DGSVTVEDNGRGIPVDI------HPEEGISAVEVVLTVLHAGGKF 99 (654)
T ss_pred chHHhhhHHhhhccccccc--cCCCCEEEEEEeC-CCcEEEEEeCCCcCccc------cCcCCCCchHHheeeecccCcc
Confidence 5688999999999999321 14 7888887774 45699999999999862 11111110 0000011113332
Q ss_pred CC--CCCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000396 236 PY--LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1576)
Q Consensus 236 ~~--~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~ 270 (1576)
.. .....|+.|+|++ +.-.+.+.++|.|++.+..
T Consensus 100 ~~~~~k~s~G~~G~gl~-~inalS~~l~v~~~~~g~~ 135 (654)
T TIGR01059 100 DKDSYKVSGGLHGVGVS-VVNALSEWLEVTVFRDGKI 135 (654)
T ss_pred CCCcceecCCccchhHH-HHHHhcCeEEEEEEECCeE
Confidence 21 1346899999986 3445667799999987655
No 32
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=97.74 E-value=7.9e-05 Score=95.11 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=67.8
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccc-hhccccccccCCCCC
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGAS-LHRASKAQGIGGKPP 236 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~~I~I~DNG~GMs~deL~~~~~wG~~g~S-~~R~~~a~~~ggk~~ 236 (1576)
..+...+.||||||+|... ...+++|.|.|.-+ +.|+|.|||+||+.+.- ...+.+ ..-.....-.|++..
T Consensus 36 ~gl~~~v~ElvdNaiDe~~-ag~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h------~~~ki~~~e~i~~~lhag~kfd 107 (638)
T PRK05644 36 RGLHHLVYEIVDNSIDEAL-AGYCDHIEVTINED-GSITVTDNGRGIPVDIH------PKTGKPAVEVVLTVLHAGGKFG 107 (638)
T ss_pred hhHHhhhHHhhhccccccc-CCCCCEEEEEEeCC-CcEEEEEeCccccCCcc------CCCCCCchHHheeeecccCccC
Confidence 4678999999999999321 01388888877754 59999999999998621 111111 000000111233332
Q ss_pred C--CCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 237 Y--LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 237 ~--~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
. ..-..|+.|+|++ +.-.+.+.++|.|++.+. .+...++
T Consensus 108 ~~~yk~s~G~~G~Gls-~vnalS~~~~v~t~r~g~--~~~~~~~ 148 (638)
T PRK05644 108 GGGYKVSGGLHGVGVS-VVNALSTWLEVEVKRDGK--IYYQEYE 148 (638)
T ss_pred CCcccccCCccccchh-hhhheeceEEEEEEeCCc--EEEEEEE
Confidence 1 1236899999986 344566779999998765 3444444
No 33
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=97.68 E-value=0.00021 Score=70.22 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=63.4
Q ss_pred HHHHHHHHhhcchhccccCCCceEEEEEEeec--CCeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCC
Q 000396 160 FETALADLIDNSLQAVWTNAKNERRLISVNIA--EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1576)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~rI~I~I~~~--~~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~~ 237 (1576)
+..+|.||++||+++...+ ..|.|.+... .-.|.|.|||.||+.+++..+..-+. +. . .
T Consensus 6 l~~il~~ll~Na~~~~~~~---~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~---~~-----------~--~ 66 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEG---GKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFF---TS-----------D--K 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHT---SEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTS---HS-----------S--S
T ss_pred HHHHHHHHHHHHHHHhcCC---CEEEEEEEEecCeEEEEEEeccccccccccccchhhcc---cc-----------c--c
Confidence 6789999999999996433 4677777664 45688999999999999976321111 00 0 0
Q ss_pred CCCCccccccchhhhh---hcccCEEEEEEeeCCCceEEEEEEe
Q 000396 238 LTPFFGMFGYGGPIAS---MHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 238 ~~~~iGrFGvGlK~As---fsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
.....+.+|+|+..+. -.++-++.+.+...+. ....+.++
T Consensus 67 ~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~g-t~v~~~~p 109 (111)
T PF02518_consen 67 SETSISGHGLGLYIVKQIAERHGGELTIESSEGGG-TTVTFTLP 109 (111)
T ss_dssp SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTE-EEEEEEEE
T ss_pred cccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCc-EEEEEEEE
Confidence 1223445788875432 2366678888886443 33445544
No 34
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=97.65 E-value=9e-05 Score=95.60 Aligned_cols=94 Identities=16% Similarity=0.246 Sum_probs=64.1
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeecCCeEEEEECCCCCChH----------hHhHhhhccccccchhcccc
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDST----------DENSIVKWGKMGASLHRASK 227 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~~I~I~DNG~GMs~d----------eL~~~~~wG~~g~S~~R~~~ 227 (1576)
.-+...+.|+||||+|-... ..+++|.|.|+-+ ++|+|.|||+||+.+ |+- |+...
T Consensus 36 ~GLhhlv~EivdNaiDE~~A-G~a~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv----lt~lh-------- 101 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALA-GHCDDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI----MTVLH-------- 101 (756)
T ss_pred cchhhhhhHhhccccccccc-CCCCEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe----eeeec--------
Confidence 56889999999999992110 1378877777654 589999999999987 221 22211
Q ss_pred ccccCCCCC---CCCCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000396 228 AQGIGGKPP---YLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1576)
Q Consensus 228 a~~~ggk~~---~~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~ 270 (1576)
.|++.. |.. ..|+.|+|.+ +.-.+...++|.|++.|..
T Consensus 102 ---AggKfd~~~ykv-SgGlhGvG~s-vvNAlS~~l~v~v~r~gk~ 142 (756)
T PRK14939 102 ---AGGKFDQNSYKV-SGGLHGVGVS-VVNALSEWLELTIRRDGKI 142 (756)
T ss_pred ---ccCCCCCCcccc-cCCccCccce-EeehccCeEEEEEEeCCeE
Confidence 122222 222 6799999975 3445677799999987754
No 35
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.26 E-value=0.0088 Score=78.57 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=44.1
Q ss_pred CCCCceeeecccccccCchHHHHHHHHhcccccceEEEecHHHHHHHHHhh
Q 000396 1313 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYE 1363 (1576)
Q Consensus 1313 ~~~gV~G~Va~L~~V~d~~la~als~~lG~~~m~~VV~~t~~~ak~le~Yl 1363 (1576)
+..-.+|.++...++.+++++.+|+.+||+ .+++-+|.+...+..|....
T Consensus 491 f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n-~lnaFiv~sh~D~~~Lr~i~ 540 (1074)
T KOG0250|consen 491 FQTPPKGPLGKYVTLKEPKWALAIERCLGN-LLNAFIVTSHKDARILRAIM 540 (1074)
T ss_pred CCCCCCCCccceeEecCcHHHHHHHHHHHH-hhhhheeCCHhhHHHHHHHH
Confidence 456678999999999999999999999998 69999999998888887665
No 36
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=96.91 E-value=0.0014 Score=83.81 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=66.0
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccc--hhccccccccCCCC
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGAS--LHRASKAQGIGGKP 235 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~~I~I~DNG~GMs~deL~~~~~wG~~g~S--~~R~~~a~~~ggk~ 235 (1576)
.-+...+.|+||||+|-... ..+++|.|.|+ ..++|+|.|||+||+.+ .+. .-+..... .. ..-.|++.
T Consensus 33 ~GL~hlv~EIvdNavDE~~a-g~~~~I~V~i~-~dgsitV~DnGrGIPv~-~h~--~~~~~~~E~v~t----~LhaGgkf 103 (637)
T TIGR01058 33 KGLHHLVWEIVDNSVDEVLA-GYADNITVTLH-KDNSITVQDDGRGIPTG-IHQ--DGNISTVETVFT----VLHAGGKF 103 (637)
T ss_pred chhheehhhhhcchhhhhhc-CCCcEEEEEEc-CCCeEEEEECCCcccCc-ccC--cCCCccceeEEE----EecccCcC
Confidence 45788899999999996432 35778777777 45689999999999864 211 01111110 00 11124443
Q ss_pred CCC--CCCccccccchhhhhhcccCEEEEEEeeCCCce
Q 000396 236 PYL--TPFFGMFGYGGPIASMHLGRRALVSSKTKVSKE 271 (1576)
Q Consensus 236 ~~~--~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~~ 271 (1576)
... .-.-|+.|+|.+ ..=.+...++|.+++.|..+
T Consensus 104 d~~~ykvSGGlhGvG~s-vvNAlS~~~~V~v~r~gk~~ 140 (637)
T TIGR01058 104 DQGGYKTAGGLHGVGAS-VVNALSSWLEVTVKRDGQIY 140 (637)
T ss_pred CCCcccccCCccccccc-ccceeeceEEEEEEECCEEE
Confidence 221 234589999975 44567788999999766443
No 37
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.60 E-value=0.0055 Score=83.48 Aligned_cols=122 Identities=11% Similarity=0.143 Sum_probs=77.8
Q ss_pred cccccccCCCHH-HH-hhCCCCCCHHHHHHHHhhcchhccccC---CCceEEEEEEeecCCeEEEEECCCCCChHhHhHh
Q 000396 138 FENMWDLTPDTD-LL-RELPEDYTFETALADLIDNSLQAVWTN---AKNERRLISVNIAEDKISVFDTGPGMDSTDENSI 212 (1576)
Q Consensus 138 ~~n~~dL~P~~~-lL-~~l~~~Ysl~sALAELVDNSIDA~~~N---a~A~rI~I~I~~~~~~I~I~DNG~GMs~deL~~~ 212 (1576)
++.+|-+.+... +. +.....--+...+-|+||||+|-..+. ..++.|.|.|+-+.++|+|+|||+||+-+- +.
T Consensus 34 ~~~~wv~~~~~~~m~~~~v~~vpGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~-h~- 111 (1388)
T PTZ00108 34 TEDMWVYDEEKNRMVYKTITYVPGLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEENGEISVYNDGEGIPVQI-HK- 111 (1388)
T ss_pred ccceeeecccccccccccccccchhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccCCeEEEEecCCcccCCC-CC-
Confidence 456666665543 11 222223468899999999999986543 356788888877778999999999997652 21
Q ss_pred hhccccccc--hhccccccccCCCCCC--CCCCccccccchhhhhhcccCEEEEEEeeC
Q 000396 213 VKWGKMGAS--LHRASKAQGIGGKPPY--LTPFFGMFGYGGPIASMHLGRRALVSSKTK 267 (1576)
Q Consensus 213 ~~wG~~g~S--~~R~~~a~~~ggk~~~--~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~ 267 (1576)
..+.+.+. .. ..-.|++... ..-.-|+.|+|.+ .+=.+...++|.++..
T Consensus 112 -~~~~~~pElIft----~L~aGgkfdd~~yKvSGGlhGVGas-vvNalS~~f~Vev~r~ 164 (1388)
T PTZ00108 112 -EHKIYVPEMIFG----HLLTSSNYDDTEKRVTGGRNGFGAK-LTNIFSTKFTVECVDS 164 (1388)
T ss_pred -CCCCccceEEEE----EeeccccCCCCceeeecccccCCcc-ccccccceEEEEEEEC
Confidence 12222111 11 1122444322 1346799999976 4556788999999987
No 38
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.47 E-value=0.0057 Score=82.43 Aligned_cols=121 Identities=12% Similarity=0.184 Sum_probs=74.9
Q ss_pred ccccccccCCCHHHH-hhCCCCCCHHHHHHHHhhcchhccccCCCceEEEEEEeecCCeEEEEECCCCCChHhHhHhhhc
Q 000396 137 TFENMWDLTPDTDLL-RELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKW 215 (1576)
Q Consensus 137 ~~~n~~dL~P~~~lL-~~l~~~Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~~I~I~DNG~GMs~deL~~~~~w 215 (1576)
.++.+|-+... .+. +.....--+..-+-|+||||+|-......++.|.|.|+.+.++|+|+|||+||+-+--. .-
T Consensus 30 ~~~~~wv~~~~-~~~~~~v~~vpGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~---~~ 105 (1135)
T PLN03128 30 HTQTLWVYEGG-EMVNREVTYVPGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQNTISVYNNGKGIPVEIHK---EE 105 (1135)
T ss_pred ccceeeEeccc-ceeeeccccchhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCCeEEEEecCccccCCCCC---CC
Confidence 34556655543 211 12222335788999999999998644446788888888778999999999999875221 12
Q ss_pred cccccc--hhccccccccCCCCCCC--CCCccccccchhhhhhcccCEEEEEEee
Q 000396 216 GKMGAS--LHRASKAQGIGGKPPYL--TPFFGMFGYGGPIASMHLGRRALVSSKT 266 (1576)
Q Consensus 216 G~~g~S--~~R~~~a~~~ggk~~~~--~~~iGrFGvGlK~AsfsLG~~ltV~SK~ 266 (1576)
|.+.+. .. ..-.||+.... .-.-|+.|+|.+ .+=.+...++|.++.
T Consensus 106 g~~~~ElIft----~LhaGgkFdd~~ykvSGGlhGvGas-vvNaLS~~f~Vev~d 155 (1135)
T PLN03128 106 GVYVPELIFG----HLLTSSNFDDNEKKTTGGRNGYGAK-LANIFSTEFTVETAD 155 (1135)
T ss_pred CCccceEEEE----eeccccccCCccceeeccccCCCCe-EEEeecCeEEEEEEE
Confidence 222211 11 11224443321 346799999975 344577889999983
No 39
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.40 E-value=0.0081 Score=81.79 Aligned_cols=127 Identities=14% Similarity=0.198 Sum_probs=78.5
Q ss_pred cCCcccccccccccccCCCHHHH-hhCCCCCCHHHHHHHHhhcchhccccCCCceEEEEEEeecCCeEEEEECCCCCChH
Q 000396 129 DGSGEIAKTFENMWDLTPDTDLL-RELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDST 207 (1576)
Q Consensus 129 ~g~~~~~~~~~n~~dL~P~~~lL-~~l~~~Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~~I~I~DNG~GMs~d 207 (1576)
-|+- ...++.+|-+... .+. +.....--+...+-|+||||+|-.......+.|.|.|+.+.++|+|+|||+||+-+
T Consensus 49 IGSt--~~~~~~~wv~~~~-~m~~~~v~~vpGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~gsIsV~DnGRGIPV~ 125 (1465)
T PLN03237 49 IGSI--EKHTQTLWVYETD-KMVQRSVTYVPGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQNLISVYNNGDGVPVE 125 (1465)
T ss_pred eCCC--Ccccceeeeeccc-cceeeeccccchhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCCCEEEEEecCccccCC
Confidence 4544 2345666666221 121 22222345788999999999998644445788888888888999999999999865
Q ss_pred hHhHhhhccccccc--hhccccccccCCCCCC--CCCCccccccchhhhhhcccCEEEEEEee
Q 000396 208 DENSIVKWGKMGAS--LHRASKAQGIGGKPPY--LTPFFGMFGYGGPIASMHLGRRALVSSKT 266 (1576)
Q Consensus 208 eL~~~~~wG~~g~S--~~R~~~a~~~ggk~~~--~~~~iGrFGvGlK~AsfsLG~~ltV~SK~ 266 (1576)
++. ..|.+... +. ..-.||+... -.-.-|+.|+|.+ .+=.+...++|.++.
T Consensus 126 -iH~--~eg~~~pElIft----~LhAGgkFdd~~yKvSGGlhGVGas-vvNaLS~~f~Vev~D 180 (1465)
T PLN03237 126 -IHQ--EEGVYVPEMIFG----HLLTSSNYDDNEKKTTGGRNGYGAK-LTNIFSTEFVIETAD 180 (1465)
T ss_pred -CCC--CCCCccceEEEE----eeeccccCCCCcceeeccccccCcc-ccccccCeeEEEEEE
Confidence 221 12222211 11 1222444432 2346799999976 344677889999983
No 40
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=96.38 E-value=0.0091 Score=74.21 Aligned_cols=101 Identities=29% Similarity=0.347 Sum_probs=70.4
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeecCCe--EEEEECCCCCChHhHhHhhhccccccchhccccccccCCCC
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDK--ISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~~--I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~ 235 (1576)
..+.+.|.-|||||+||.+.....+.|.+++...++. |.|.|||+||+++....+..- |+|.
T Consensus 426 ~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~---G~St------------- 489 (537)
T COG3290 426 HDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEK---GVST------------- 489 (537)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhc---Cccc-------------
Confidence 4788999999999999987533446677777776554 669999999999988753222 2221
Q ss_pred CCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000396 236 PYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1576)
Q Consensus 236 ~~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~Ld~ 279 (1576)
+.-+.-|+|+.+ ..=.+|..++|.|.. +.-..+.+.|.+
T Consensus 490 ----k~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~-~~Gt~F~i~iP~ 531 (537)
T COG3290 490 ----KNTGGRGIGLYLVKQLVERLGGSIEVESEK-GQGTRFSIYIPK 531 (537)
T ss_pred ----cCCCCCchhHHHHHHHHHHcCceEEEeeCC-CCceEEEEECCC
Confidence 123444777753 455688999999974 334566676665
No 41
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=96.38 E-value=0.017 Score=53.38 Aligned_cols=88 Identities=26% Similarity=0.268 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcchhccccCCCceEEEEEEeecC--CeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCC
Q 000396 160 FETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1576)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~--~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~~ 237 (1576)
+..+++||++||+++... ....|.|.+..+. -.|.|.|+|.||++..+..+... . .. ..
T Consensus 1 l~~~~~~ll~Na~~~~~~--~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~--~-------------~~--~~ 61 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPE--GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFER--F-------------SD--GS 61 (103)
T ss_pred CHHHHHHHHHHHHHhCcC--CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhh--h-------------hc--CC
Confidence 357899999999999532 1345666666554 35779999999999988652110 0 00 01
Q ss_pred CCCCccccccchhhh---hhcccCEEEEEEee
Q 000396 238 LTPFFGMFGYGGPIA---SMHLGRRALVSSKT 266 (1576)
Q Consensus 238 ~~~~iGrFGvGlK~A---sfsLG~~ltV~SK~ 266 (1576)
.....+.+|+|++.+ +..+|..+.+.+..
T Consensus 62 ~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~ 93 (103)
T cd00075 62 RSRKGGGTGLGLSIVKKLVELHGGRIEVESEP 93 (103)
T ss_pred CCCCCCccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 122345678887642 33356688887765
No 42
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=96.34 E-value=0.031 Score=52.50 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcchhccccCCCceEEEEEEeecC--CeEEEEECCCCCChHhHhH
Q 000396 160 FETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENS 211 (1576)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~--~~I~I~DNG~GMs~deL~~ 211 (1576)
+..++.|+++|++++... ...|.|.+.... -.|.|.|||.||+.+++..
T Consensus 6 l~~~~~~l~~n~~~~~~~---~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~ 56 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPE---GGRITVTLERDGDHLEITVEDNGPGIPPEDLEK 56 (111)
T ss_pred HHHHHHHHHHHHHhcCCC---CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 678899999999999522 245677776653 4588999999999998865
No 43
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=96.16 E-value=0.0062 Score=76.59 Aligned_cols=103 Identities=18% Similarity=0.159 Sum_probs=67.3
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccc--hhccccccccCCCC
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGAS--LHRASKAQGIGGKP 235 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~~I~I~DNG~GMs~deL~~~~~wG~~g~S--~~R~~~a~~~ggk~ 235 (1576)
.-+-.-+.|+||||+|-.... -++.|.|.++ ..++|+|.|||+||+-+-=.. .+....- .. ..-.||+.
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG-~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~---~~~~~vEvI~T----~LHAGGKF 105 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAG-YADRIDVTLH-EDGSISVEDNGRGIPVDIHPK---EKVSAVEVIFT----VLHAGGKF 105 (635)
T ss_pred CcceeeEeEeeechHhHHhhC-cCcEEEEEEc-CCCeEEEEECCCCCccccCCC---CCCCceEEEEE----eeccCccc
Confidence 457778899999999985544 5777777666 678899999999999774211 1111110 11 12225554
Q ss_pred CCC--CCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000396 236 PYL--TPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1576)
Q Consensus 236 ~~~--~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~ 270 (1576)
..+ .-.=|..|+|.+ ..=.|...+.|.+++.|..
T Consensus 106 d~~~YkvSGGLHGVG~S-VVNALS~~l~v~v~r~gk~ 141 (635)
T COG0187 106 DNDSYKVSGGLHGVGVS-VVNALSTWLEVEVKRDGKI 141 (635)
T ss_pred CCCccEeecCCCccceE-EEecccceEEEEEEECCEE
Confidence 432 224588999953 4445778899999987643
No 44
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.12 E-value=0.0061 Score=79.65 Aligned_cols=49 Identities=14% Similarity=0.314 Sum_probs=38.5
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeecCCeEEEEECCCCCChHh
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTD 208 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~~I~I~DNG~GMs~de 208 (1576)
.-+-.-+-|+||||+|-... ..++.|.|.|.- .++|+|.|||+||+-+.
T Consensus 128 ~GLhhLv~EIlDNSVDE~la-G~~~~I~V~i~~-DgsItV~DnGRGIPvd~ 176 (903)
T PTZ00109 128 KGLHQLLFEILDNSVDEYLA-GECNKITVVLHK-DGSVEISDNGRGIPCDV 176 (903)
T ss_pred CcceEEEEEEeeccchhhcc-CCCcEEEEEEcC-CCeEEEEeCCccccccc
Confidence 35777889999999997544 357887777654 47899999999998753
No 45
>PRK10604 sensor protein RstB; Provisional
Probab=96.06 E-value=0.036 Score=67.56 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=62.8
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..++..||+||+.+. ...|.|++..+.+ .|.|.|||.||+++++..+..-.. | +. .
T Consensus 319 ~l~~vl~NLl~NAik~~-----~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~------r-------~~--~ 378 (433)
T PRK10604 319 LMERVLDNLLNNALRYA-----HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFV------R-------LD--P 378 (433)
T ss_pred HHHHHHHHHHHHHHHhC-----CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCc------c-------CC--C
Confidence 36789999999999983 4567777766544 488999999999999875321110 0 00 0
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
.....-|-+|+|+.. .+-.+|..+++.+...+ ...+++.+.
T Consensus 379 ~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~-G~~f~i~lP 422 (433)
T PRK10604 379 SRDRATGGCGLGLAIVHSIALAMGGSVNCDESELG-GARFSFSWP 422 (433)
T ss_pred CCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCC-eeEEEEEEe
Confidence 001123456888754 34458889999987543 334444443
No 46
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=95.75 E-value=0.048 Score=64.04 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=62.3
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecC--CeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~--~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..++..||+||+.+.. ....|.|.+..+. -.|.|.|||.||+++++..+..-.. | .
T Consensus 247 ~l~~il~nLi~NA~k~~~---~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~------~-------~---- 306 (356)
T PRK10755 247 LLRLLLRNLVENAHRYSP---EGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFV------R-------M---- 306 (356)
T ss_pred HHHHHHHHHHHHHHhhCC---CCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeE------e-------C----
Confidence 467899999999999842 2345777776544 3588999999999999875321110 0 0
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
...-+-+|+|+.. -+-.+|..+.+.|...+......+.+.
T Consensus 307 --~~~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p 349 (356)
T PRK10755 307 --DSRYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLP 349 (356)
T ss_pred --CCCCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEec
Confidence 0012235777654 234578899999987523344445443
No 47
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=95.62 E-value=0.052 Score=65.22 Aligned_cols=88 Identities=19% Similarity=0.171 Sum_probs=56.3
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..++..||+||+.+ ....|.|.+..+.+ .|+|.|||.||+++++..+..-+. | + .
T Consensus 331 ~l~~il~NLl~NA~k~-----~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~------~-------~---~ 389 (435)
T PRK09467 331 AIKRALANLVVNAARY-----GNGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFT------R-------G---D 389 (435)
T ss_pred HHHHHHHHHHHHHHHh-----CCCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcc------c-------C---C
Confidence 3567899999999988 34567777665544 488999999999999875321111 0 0 0
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCC
Q 000396 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKV 268 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~A---sfsLG~~ltV~SK~~g 268 (1576)
..+. .+-+|+|+..+ +-.+|..+++.+...+
T Consensus 390 ~~~~-~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~ 423 (435)
T PRK09467 390 SARG-SSGTGLGLAIVKRIVDQHNGKVELGNSEEG 423 (435)
T ss_pred CCCC-CCCeehhHHHHHHHHHHCCCEEEEEECCCC
Confidence 0111 13467887531 2346778888877544
No 48
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=95.62 E-value=0.075 Score=64.45 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=63.7
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecC--CeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~--~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..++..|++||+++.. ....|.|.+..+. -.|.|.|||.||+++++.++..... +.+ .
T Consensus 317 ~l~~vl~NLl~NAik~~~---~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~---~~~------------~ 378 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTP---EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFY---RVD------------K 378 (430)
T ss_pred HHHHHHHHHHHHHHhcCC---CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcc---ccc------------C
Confidence 478999999999999952 2345667665543 3588999999999999876321110 000 0
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000396 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~Ld~ 279 (1576)
......+-.|+|+.. -+-.+|..+.+.|... ....+.+.+..
T Consensus 379 ~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~~~-~Gt~f~i~lP~ 423 (430)
T PRK11006 379 ARSRQTGGSGLGLAIVKHALSHHDSRLEIESEVG-KGTRFSFVLPE 423 (430)
T ss_pred CCCCCCCCCchHHHHHHHHHHHCCCEEEEEecCC-CceEEEEEech
Confidence 001112334788754 2335788999998764 33455666654
No 49
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=95.58 E-value=0.053 Score=65.33 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=60.0
Q ss_pred HHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCC
Q 000396 160 FETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1576)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~~ 237 (1576)
+..++.+||+||+.+. ...|.|++..+.+ .|.|.|||.||+.+++..+..- .++. . ..
T Consensus 354 l~~~l~nli~NA~~~~-----~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~---~~~~----------~--~~ 413 (461)
T PRK09470 354 LASALENIVRNALRYS-----HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRP---FYRV----------D--EA 413 (461)
T ss_pred HHHHHHHHHHHHHHhC-----CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCC---CccC----------C--cc
Confidence 5678999999999983 3457777766544 4789999999999998752111 1000 0 00
Q ss_pred CCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEE
Q 000396 238 LTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHL 277 (1576)
Q Consensus 238 ~~~~iGrFGvGlK~A---sfsLG~~ltV~SK~~gs~~v~~l~L 277 (1576)
.....+.+|+|+..+ .-.+|..+.+.|...+. ..+.+.+
T Consensus 414 ~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~G-t~~~i~l 455 (461)
T PRK09470 414 RDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGG-LRLTIWL 455 (461)
T ss_pred cCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCe-EEEEEEe
Confidence 011234557777642 34577889998876442 3334444
No 50
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=95.51 E-value=0.014 Score=74.65 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=60.8
Q ss_pred CHHHHHHHHhhcchhccccC--CCceEEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccc--hhccccccccCCC
Q 000396 159 TFETALADLIDNSLQAVWTN--AKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGAS--LHRASKAQGIGGK 234 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~N--a~A~rI~I~I~~~~~~I~I~DNG~GMs~deL~~~~~wG~~g~S--~~R~~~a~~~ggk 234 (1576)
-+..-+-|+||||+|-.... ..+++|.|.++ .++|+|.|||+||+-+--.....-+...+. .. ..-.|++
T Consensus 45 GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t----~LhaGgk 118 (602)
T PHA02569 45 GLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWT----RTKAGSN 118 (602)
T ss_pred cceeeeehhhhhhhhhhhccCCCCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEE----eeccccc
Confidence 35556679999999975431 14778777777 778999999999976422100000011100 01 1122444
Q ss_pred CCC-CCCCccccccchhhhhhcccCEEEEEEeeC
Q 000396 235 PPY-LTPFFGMFGYGGPIASMHLGRRALVSSKTK 267 (1576)
Q Consensus 235 ~~~-~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~ 267 (1576)
... -.-.-|+.|+|.+ ..=.|...++|.++..
T Consensus 119 Fd~~ykvSGGlhGVG~s-vvNaLS~~~~V~v~~~ 151 (602)
T PHA02569 119 FDDTNRVTGGMNGVGSS-LTNFFSVLFIGETCDG 151 (602)
T ss_pred cCCcceeeCCcCCccce-eeeccchhhheEEEcC
Confidence 421 1335789999975 4446778888877543
No 51
>PRK10364 sensor protein ZraS; Provisional
Probab=95.50 E-value=0.063 Score=65.52 Aligned_cols=95 Identities=23% Similarity=0.249 Sum_probs=61.5
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..++..|++||++|.. ....|.|.+..+.+ .|.|.|||.||+++.+.++...+ ++ .+
T Consensus 348 ~l~~il~NLl~NA~k~~~---~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~---~~-------------~k 408 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIG---QHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPY---FT-------------TK 408 (457)
T ss_pred HHHHHHHHHHHHHHHhcC---CCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCcc---cc-------------CC
Confidence 577899999999999952 24567777766543 58899999999999987632211 11 00
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
.-| .|+|+.. .+-.+|.++.+.|...+ ...+.+.+.
T Consensus 409 ----~~g-~GlGL~iv~~~v~~~gG~i~i~s~~~~-Gt~f~i~lP 447 (457)
T PRK10364 409 ----AEG-TGLGLAVVHNIVEQHGGTIQVASQEGK-GATFTLWLP 447 (457)
T ss_pred ----CCC-CcccHHHHHHHHHHCCCEEEEEeCCCC-cEEEEEEec
Confidence 112 3777653 33347888998887533 344555554
No 52
>PRK09303 adaptive-response sensory kinase; Validated
Probab=95.36 E-value=0.085 Score=63.49 Aligned_cols=98 Identities=18% Similarity=0.269 Sum_probs=59.7
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEee-cCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNI-AED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~-~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~ 235 (1576)
.+..+|..||+||+.+.. ....|.|.+.. ... .|.|.|||.||+.+++..+..-.. + .
T Consensus 272 ~l~qvl~NLl~NAik~~~---~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~---~---------~---- 332 (380)
T PRK09303 272 RIRQVLLNLLDNAIKYTP---EGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRV---R---------L---- 332 (380)
T ss_pred HHHHHHHHHHHHHHhcCC---CCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCce---e---------C----
Confidence 377899999999999952 22356666543 333 488999999999999875321100 0 0
Q ss_pred CCCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEE
Q 000396 236 PYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHL 277 (1576)
Q Consensus 236 ~~~~~~iGrFGvGlK~A---sfsLG~~ltV~SK~~gs~~v~~l~L 277 (1576)
+. ....+-+|+|+..+ +-.+|..+.|.|...+. ..+.+.+
T Consensus 333 ~~-~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~G-t~f~i~l 375 (380)
T PRK09303 333 PR-DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQG-SCFHFTL 375 (380)
T ss_pred CC-CCCCCcccccHHHHHHHHHHcCCEEEEEecCCCc-cEEEEEE
Confidence 00 11223367887542 33588899998876432 3344433
No 53
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=95.27 E-value=0.11 Score=62.39 Aligned_cols=50 Identities=22% Similarity=0.428 Sum_probs=38.5
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhH
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENS 211 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~ 211 (1576)
.+..++.+|++||+.+.. ....|.|++..+.+ .|.|.|||.||+++.+..
T Consensus 353 ~l~~~~~nll~Nai~~~~---~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~ 404 (457)
T TIGR01386 353 MFRRAISNLLSNALRHTP---DGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSR 404 (457)
T ss_pred HHHHHHHHHHHHHHHcCC---CCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHH
Confidence 367899999999999841 22467777766544 588999999999998865
No 54
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.19 E-value=0.25 Score=66.92 Aligned_cols=30 Identities=17% Similarity=0.042 Sum_probs=19.3
Q ss_pred CCceeeecccccccCchHHHHHHHHhcccccceEEE
Q 000396 1315 EDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVC 1350 (1576)
Q Consensus 1315 ~gV~G~Va~L~~V~d~~la~als~~lG~~~m~~VV~ 1350 (1576)
.|+.|.|+.+..|+. .+ ..++|. .+..|++
T Consensus 502 ~~~~~~v~~~i~v~~-~~----~~~~g~-~~~li~~ 531 (1179)
T TIGR02168 502 EGFSEGVKALLKNQS-GL----SGILGV-LSELISV 531 (1179)
T ss_pred ccchhHHHHHHhccc-cc----CCCccc-hhceeee
Confidence 478888999998853 43 235565 4555555
No 55
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=95.17 E-value=0.11 Score=64.51 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=63.8
Q ss_pred HHHHHHHHhhcchhccccCC-CceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 160 FETALADLIDNSLQAVWTNA-KNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 160 l~sALAELVDNSIDA~~~Na-~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
+...+.+|++||++|...+. +...|.|.+....+ .|.|.|||.||+++++.++..-+ ++. +
T Consensus 433 l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~---~~t-----------k-- 496 (545)
T PRK15053 433 FAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQG---VST-----------R-- 496 (545)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCC---CCC-----------C--
Confidence 55689999999999965443 23567777766544 47899999999999987633211 110 0
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000396 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~Ld~ 279 (1576)
....|..|+|+.. -+-..|..++|.|.. +....+.+.+..
T Consensus 497 --~~~~~g~GlGL~ivk~iv~~~~G~i~v~s~~-~~Gt~f~i~lP~ 539 (545)
T PRK15053 497 --ADEPGEHGIGLYLIASYVTRCGGVITLEDND-PCGTLFSIFIPK 539 (545)
T ss_pred --CCCCCCceeCHHHHHHHHHHcCCEEEEEECC-CCeEEEEEEECC
Confidence 0112334777753 233477789998875 334455665553
No 56
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=95.14 E-value=0.098 Score=64.46 Aligned_cols=98 Identities=22% Similarity=0.276 Sum_probs=62.0
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..++.+|++||++|.... ....|.|++....+ .|.|.|||.||+++++..+..-+ . +.
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~-~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~~---~-------------~~- 494 (542)
T PRK11086 433 ELITILGNLIENALEAVGGE-EGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKG---Y-------------ST- 494 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcC-CCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhCC---C-------------cc-
Confidence 36788999999999995322 34567777666544 47899999999999987532110 0 00
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000396 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~Ld~ 279 (1576)
.. +-.|+|+.. -.-..|.++.+.|.. +...++.+.+..
T Consensus 495 ---~~-~g~GlGL~iv~~iv~~~~G~i~v~s~~-~~G~~f~i~lP~ 535 (542)
T PRK11086 495 ---KG-SNRGVGLYLVKQSVENLGGSIAVESEP-GVGTQFFVQIPW 535 (542)
T ss_pred ---CC-CCCcCcHHHHHHHHHHcCCEEEEEeCC-CCcEEEEEEEeC
Confidence 01 123777653 233478889998875 333455555553
No 57
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=94.79 E-value=0.092 Score=64.59 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=37.7
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeec--C-CeEEEEECCCCCChHhHhH
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA--E-DKISVFDTGPGMDSTDENS 211 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~--~-~~I~I~DNG~GMs~deL~~ 211 (1576)
.+..++.+|++||+.+.. ....|.|++... . -.|.|.|||.||+++++..
T Consensus 500 ~l~~~~~nli~na~~~~~---~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~ 552 (607)
T PRK11360 500 LLKQVLLNILINAVQAIS---ARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKK 552 (607)
T ss_pred HHHHHHHHHHHHHHHHhc---CCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhh
Confidence 377899999999999842 133566666543 2 4588999999999998865
No 58
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=94.76 E-value=0.13 Score=66.57 Aligned_cols=85 Identities=26% Similarity=0.266 Sum_probs=55.4
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHh-HhHhhhccccccchhccccccccCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTD-ENSIVKWGKMGASLHRASKAQGIGGKP 235 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~de-L~~~~~wG~~g~S~~R~~~a~~~ggk~ 235 (1576)
.+..++.+||+||+++.. ....|.|++...++ .|.|.|||.||+++. .+++ | ... .+
T Consensus 579 ~l~~vl~nLl~NAik~~~---~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~l--F-~pf-------------~~- 638 (679)
T TIGR02916 579 RLERVLGHLVQNALEATP---GEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERL--F-KPF-------------DT- 638 (679)
T ss_pred HHHHHHHHHHHHHHHhCC---CCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhc--C-CCC-------------CC-
Confidence 477899999999999952 23467777765444 588999999999998 4331 1 000 00
Q ss_pred CCCCCCccccccchhhh---hhcccCEEEEEEeeC
Q 000396 236 PYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTK 267 (1576)
Q Consensus 236 ~~~~~~iGrFGvGlK~A---sfsLG~~ltV~SK~~ 267 (1576)
.+. +-.|+|+..+ +-.+|.++++.|...
T Consensus 639 ---~~~-~G~GLGL~i~~~iv~~~gG~i~v~s~~g 669 (679)
T TIGR02916 639 ---TKG-AGMGIGVYECRQYVEEIGGRIEVESTPG 669 (679)
T ss_pred ---CCC-CCcchhHHHHHHHHHHcCCEEEEEecCC
Confidence 011 3347776532 334888999998763
No 59
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.72 E-value=0.11 Score=57.73 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=39.4
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecC--CeEEEEECCCCCChHhHhH
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENS 211 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~--~~I~I~DNG~GMs~deL~~ 211 (1576)
.+..++..|++||++|.. ...|.|.+.... -.|.|.|||.||+++.+..
T Consensus 228 ~l~~vl~nLi~NAi~~~~----~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~ 278 (336)
T COG0642 228 RLRQVLVNLLSNAIKYTP----GGEITISVRQDDEQVTISVEDTGPGIPEEELER 278 (336)
T ss_pred HHHHHHHHHHHHHhccCC----CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHH
Confidence 578899999999999942 456667666554 4688999999999999765
No 60
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=94.65 E-value=0.14 Score=61.82 Aligned_cols=51 Identities=25% Similarity=0.424 Sum_probs=39.4
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHh
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSI 212 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~ 212 (1576)
.+..++.+||.||+.+. .+...|.|++....+ .|.|.|||.||+++++..+
T Consensus 368 ~l~~vl~nli~Na~~~~---~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i 420 (475)
T PRK11100 368 LLRQALGNLLDNAIDFS---PEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRI 420 (475)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHH
Confidence 47788999999999984 133567777765543 4889999999999998763
No 61
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=94.61 E-value=0.16 Score=61.56 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=60.9
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..++..||+||+.+.. ....|.|.+..+.+ .|.|.|||.||+++++.++.. |... + . .
T Consensus 352 ~l~qvl~nll~NAi~~~~---~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~---------~~~~----~-~-~ 413 (466)
T PRK10549 352 RLMQLFNNLLENSLRYTD---SGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFE---------RFYR----T-E-G 413 (466)
T ss_pred HHHHHHHHHHHHHHHhCC---CCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhcc---------Cccc----C-C-C
Confidence 367899999999999841 23457777766554 477899999999999865211 1000 0 0 0
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
......|..|+|+.. -+-.+|.++.+.+...+. ..+.+.+.
T Consensus 414 ~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G-~~~~i~lP 457 (466)
T PRK10549 414 SRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGG-VSITVELP 457 (466)
T ss_pred CcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCe-EEEEEEcc
Confidence 001123345777653 233578889999876442 33444443
No 62
>PRK10337 sensor protein QseC; Provisional
Probab=94.44 E-value=0.13 Score=62.39 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=54.1
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYL 238 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~~~ 238 (1576)
.+..++..||+||+.+.-. ...|. +......|.|.|||.||+++++..+..-. . +.+
T Consensus 352 ~l~~vl~Nli~NA~k~~~~---~~~i~--i~~~~~~i~i~D~G~Gi~~~~~~~if~~f---------~-------~~~-- 408 (449)
T PRK10337 352 LLSLLVRNLLDNAIRYSPQ---GSVVD--VTLNARNFTVRDNGPGVTPEALARIGERF---------Y-------RPP-- 408 (449)
T ss_pred HHHHHHHHHHHHHHhhCCC---CCeEE--EEEEeeEEEEEECCCCCCHHHHHHhcccc---------c-------CCC--
Confidence 3566899999999999421 12344 44444579999999999999986521100 0 000
Q ss_pred CCCccccccchhh---hhhcccCEEEEEEeeCC
Q 000396 239 TPFFGMFGYGGPI---ASMHLGRRALVSSKTKV 268 (1576)
Q Consensus 239 ~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~g 268 (1576)
....+.+|+|+.. -+-.+|.++++.+...+
T Consensus 409 ~~~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~ 441 (449)
T PRK10337 409 GQEATGSGLGLSIVRRIAKLHGMNVSFGNAPEG 441 (449)
T ss_pred CCCCCccchHHHHHHHHHHHcCCEEEEEecCCC
Confidence 0122346888654 23347888999887643
No 63
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=94.28 E-value=0.22 Score=65.21 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=61.1
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..++..||+||+.+.- ....|.|.+..+.+ .|.|.|||.||+++++..+..-.. +. + .
T Consensus 597 ~L~~il~NLI~NAik~s~---~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~---t~-----------~-~ 658 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSP---EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMV---SV-----------R-D 658 (703)
T ss_pred HHHHHHHHHHHHHHHHCC---CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCe---ec-----------C-C
Confidence 477899999999999852 23447777666544 488999999999999875321110 00 0 0
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEE
Q 000396 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTL 275 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l 275 (1576)
......+-.|+|+.. -+-.+|..+.+.+...+....+.+
T Consensus 659 ~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I 700 (703)
T TIGR03785 659 QGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRI 700 (703)
T ss_pred CCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEE
Confidence 001112236888764 344578889998876533334443
No 64
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=94.25 E-value=0.25 Score=56.10 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=56.7
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..++.+|+.||+++.. ....|.|.+....+ .|.|.|||.||+++.+..+..... +.. ..
T Consensus 229 ~l~~vl~nll~Nai~~~~---~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~---~~~-----------~~ 291 (333)
T TIGR02966 229 ELRSAFSNLVSNAIKYTP---EGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFY---RVD-----------KS 291 (333)
T ss_pred HHHHHHHHHHHHhheeCC---CCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCce---ecC-----------cc
Confidence 467899999999999842 23457777665443 488999999999999875322111 000 00
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeC
Q 000396 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTK 267 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~ 267 (1576)
.....-| .|+|+.. -+-.+|..+.+.|...
T Consensus 292 ~~~~~~g-~glGL~~~~~~~~~~gG~i~~~s~~~ 324 (333)
T TIGR02966 292 RSRDTGG-TGLGLAIVKHVLSRHHARLEIESELG 324 (333)
T ss_pred cccCCCC-CcccHHHHHHHHHHCCCEEEEEecCC
Confidence 0011122 3677653 2334788899988763
No 65
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=94.22 E-value=0.19 Score=66.55 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=61.4
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..+|..||+||+.++ ....|.|++...++ .|.|.|||.||+++++.++..-.. + +
T Consensus 513 ~l~~il~NLl~NAik~~----~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~------------~-~---- 571 (921)
T PRK15347 513 RLRQILVNLLGNAVKFT----ETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFY------------Q-A---- 571 (921)
T ss_pred HHHHHHHHHHHHHhhcC----CCCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcc------------c-C----
Confidence 37789999999999995 33457777766544 477999999999999876321100 0 0
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~A---sfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
....+-.|+|+..+ +-.+|..++|.|... ....+.+.+.
T Consensus 572 --~~~~~g~GLGL~i~~~~~~~~gG~i~i~s~~~-~Gt~f~i~lp 613 (921)
T PRK15347 572 --DTHSQGTGLGLTIASSLAKMMGGELTLFSTPG-VGSCFSLVLP 613 (921)
T ss_pred --CCCCCCCchHHHHHHHHHHHcCCEEEEEecCC-CceEEEEEEE
Confidence 01123357777542 234788899988763 3334455554
No 66
>PRK09835 sensor kinase CusS; Provisional
Probab=94.14 E-value=0.26 Score=60.00 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=59.7
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..++..||+||+.+.. ....|.|++..+.+ .|.|.|||.||+++++..+..-. ++ . .+
T Consensus 375 ~l~~vl~nll~Na~~~~~---~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f---~~---------~---~~ 436 (482)
T PRK09835 375 MLRRAISNLLSNALRYTP---AGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRF---YR---------V---DP 436 (482)
T ss_pred HHHHHHHHHHHHHHhcCC---CCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCc---cc---------C---CC
Confidence 478899999999999842 23457777765443 58899999999999987521100 00 0 00
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEE
Q 000396 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHL 277 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~L 277 (1576)
......+-.|+|+.. -.-.+|.++++.|... ...+.+.+
T Consensus 437 ~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~~~--g~~~~i~l 478 (482)
T PRK09835 437 SRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDAR--GTRFVISL 478 (482)
T ss_pred CCCCCCCCcchHHHHHHHHHHHCCCEEEEEECCC--cEEEEEEe
Confidence 001112235777643 2334788899988643 23444444
No 67
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=94.13 E-value=0.19 Score=63.57 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=46.1
Q ss_pred hhCCCCCCHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhH
Q 000396 152 RELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENS 211 (1576)
Q Consensus 152 ~~l~~~Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~ 211 (1576)
..++....++..|--|+.||+||.... ...+|.|+..-+.+ .|+|.|||.|+.++-+.+
T Consensus 490 ~V~~~~iRLeQVLvNLl~NALDA~~~~-~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~ 550 (603)
T COG4191 490 WVMANEIRLEQVLVNLLQNALDAMAGQ-EDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPH 550 (603)
T ss_pred eeecchhhHHHHHHHHHHHHHHHhcCC-CCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHh
Confidence 334445689999999999999997553 55677787766554 477999999999998865
No 68
>PRK10815 sensor protein PhoQ; Provisional
Probab=93.99 E-value=0.2 Score=62.58 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=60.5
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..++..||+||+++. ...+.|++....+ .|.|.|||.||+++++..+...+. +..
T Consensus 378 ~l~~vl~NLi~NAik~~-----~~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f~----------------~~~ 436 (485)
T PRK10815 378 DFMEVMGNVLDNACKYC-----LEFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRGQ----------------RAD 436 (485)
T ss_pred HHHHHHHHHHHHHHHhc-----CCcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcc----------------cCC
Confidence 36789999999999994 3346676665544 588999999999999875321110 000
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~A---sfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
...+-.|+|+..+ +-.+|..+.+.|...+ ...+++.+.
T Consensus 437 ---~~~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~-Gt~f~i~lp 477 (485)
T PRK10815 437 ---TLRPGQGLGLSVAREITEQYEGKISAGDSPLG-GARMEVIFG 477 (485)
T ss_pred ---CCCCCcchhHHHHHHHHHHcCCEEEEEECCCC-EEEEEEEEc
Confidence 0112258887642 2347889999887643 334455554
No 69
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=93.97 E-value=0.37 Score=49.55 Aligned_cols=48 Identities=23% Similarity=0.392 Sum_probs=34.9
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCCe--EEEEECCCCCCh
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAEDK--ISVFDTGPGMDS 206 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~~--I~I~DNG~GMs~ 206 (1576)
.+..|+.|++.||+.+.........|.|.+....+. |.|.|||.||+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~~ 88 (137)
T TIGR01925 39 DIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIEN 88 (137)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcCc
Confidence 577899999999997632222245677777665544 779999999973
No 70
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=93.88 E-value=0.21 Score=66.58 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=62.0
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeecC---CeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCC
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAE---DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGK 234 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~---~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk 234 (1576)
..+..+|..||+||+.+. ....|.|.+.... -.|.|.|||.||+++++..+..-.. . +.
T Consensus 578 ~~l~~il~nLi~NAik~~----~~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~---------~----~~- 639 (968)
T TIGR02956 578 PRIRQVLINLVGNAIKFT----DRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFT---------Q----AD- 639 (968)
T ss_pred HHHHHHHHHHHHHHHhhC----CCCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhh---------c----cC-
Confidence 357789999999999995 3345777776543 3488999999999999876321100 0 00
Q ss_pred CCCCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 235 PPYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 235 ~~~~~~~iGrFGvGlK~A---sfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
.....|-.|+|+..+ +-.+|..+.|.|.... ...+.+.+.
T Consensus 640 ---~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~-Gt~f~~~lp 682 (968)
T TIGR02956 640 ---GRRRSGGTGLGLAISQRLVEAMDGELGVESELGV-GSCFWFTLP 682 (968)
T ss_pred ---CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCC-cEEEEEEEE
Confidence 011223457776532 3457889999887642 233444444
No 71
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=93.71 E-value=0.32 Score=52.24 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=40.1
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeecC--CeEEEEECCCCCChHhHh
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDEN 210 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~--~~I~I~DNG~GMs~deL~ 210 (1576)
..+..|+.|++-||+.....+.....|.|.+.... -.|.|.|+|.||+++.+.
T Consensus 41 ~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~ 95 (161)
T PRK04069 41 EDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLK 95 (161)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHhc
Confidence 35889999999999999654432345677766654 457899999999988764
No 72
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=93.67 E-value=0.21 Score=59.75 Aligned_cols=73 Identities=22% Similarity=0.359 Sum_probs=58.6
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCC
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~ 235 (1576)
..++.++.|.+-|++-. ++|+.+.|.+...++ .+.|.|||.|-+.+..
T Consensus 278 ~~l~rivQEaltN~~rH----a~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~-------------------------- 327 (365)
T COG4585 278 DALFRIVQEALTNAIRH----AQATEVRVTLERTDDELRLEVIDNGVGFDPDKE-------------------------- 327 (365)
T ss_pred HHHHHHHHHHHHHHHhc----cCCceEEEEEEEcCCEEEEEEEECCcCCCcccc--------------------------
Confidence 46778889999999888 589999999888655 4779999999997742
Q ss_pred CCCCCCcccccc-chhhhhhcccCEEEEEEee
Q 000396 236 PYLTPFFGMFGY-GGPIASMHLGRRALVSSKT 266 (1576)
Q Consensus 236 ~~~~~~iGrFGv-GlK~AsfsLG~~ltV~SK~ 266 (1576)
. |-||+ |++.=+-.+|..++|.|..
T Consensus 328 -----~-~~~GL~~mreRv~~lgG~l~i~S~~ 353 (365)
T COG4585 328 -----G-GGFGLLGMRERVEALGGTLTIDSAP 353 (365)
T ss_pred -----C-CCcchhhHHHHHHHcCCEEEEEecC
Confidence 1 44566 6777778899999999998
No 73
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=93.64 E-value=0.33 Score=64.51 Aligned_cols=96 Identities=19% Similarity=0.269 Sum_probs=61.8
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..++..|++||+.+. ....|.|.+..+.. .|.|.|||.||+++++..+..-.. +.
T Consensus 561 ~l~qil~NLl~NAik~~----~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~------------~~----- 619 (914)
T PRK11466 561 RIRQVITNLLSNALRFT----DEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFV------------QV----- 619 (914)
T ss_pred HHHHHHHHHHHHHHHhC----CCCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhh------------cC-----
Confidence 46789999999999995 34467777766543 488999999999999876321100 00
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~A---sfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
....|-.|+|+..+ +-.+|..++|.|...+ ...+.+.+.
T Consensus 620 --~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~-Gt~f~i~lP 661 (914)
T PRK11466 620 --SGKRGGTGLGLTISSRLAQAMGGELSATSTPEV-GSCFCLRLP 661 (914)
T ss_pred --CCCCCCCcccHHHHHHHHHHcCCEEEEEecCCC-CeEEEEEEE
Confidence 01123457777542 3348889999988643 234444444
No 74
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=93.63 E-value=0.17 Score=63.39 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=35.9
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChH
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDST 207 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~d 207 (1576)
.+..++.|+++||+.+. ++.+|.|++..+++ .|.|.|||.||+++
T Consensus 410 ~L~ril~nlL~NAiKha----~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 410 TLFRVCQEGLNNIVKHA----DASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHHhC----CCCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 46778999999999983 55678887776654 48899999999865
No 75
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=93.61 E-value=0.35 Score=58.17 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=37.5
Q ss_pred HHHHHHHHhhcchhccccCCC-ceEEEEEEeecC--CeEEEEECCCCCChHhHhH
Q 000396 160 FETALADLIDNSLQAVWTNAK-NERRLISVNIAE--DKISVFDTGPGMDSTDENS 211 (1576)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~-A~rI~I~I~~~~--~~I~I~DNG~GMs~deL~~ 211 (1576)
+..++..|+.||+++...... ...|.|...... -.|+|.|||.||+.+.+..
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~ 442 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYK 442 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHH
Confidence 688999999999999644321 123455444433 3588999999999998865
No 76
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=93.40 E-value=0.26 Score=57.50 Aligned_cols=94 Identities=20% Similarity=0.252 Sum_probs=57.4
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeec--------C----CeEEEEECCCCCChHhHhHhhhccccccchhccc
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA--------E----DKISVFDTGPGMDSTDENSIVKWGKMGASLHRAS 226 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~--------~----~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~ 226 (1576)
.+..++..|++||+.|.. .....|.|.+... . -.|.|.|||.||+++.+..+ | ....+
T Consensus 237 ~l~~vl~nLl~NA~~~~~--~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~i--F-~~~~~----- 306 (348)
T PRK11073 237 QIEQVLLNIVRNALQALG--PEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTL--F-YPMVS----- 306 (348)
T ss_pred HHHHHHHHHHHHHHHHhc--cCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhc--c-CCccc-----
Confidence 478999999999999852 1234455554321 1 25889999999999987652 1 10000
Q ss_pred cccccCCCCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEE
Q 000396 227 KAQGIGGKPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHL 277 (1576)
Q Consensus 227 ~a~~~ggk~~~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~L 277 (1576)
. .. +--|+|+.. .+-..|..+.+.|...+ ..+.+.+
T Consensus 307 --------~----~~-~g~GlGL~i~~~iv~~~gG~i~~~s~~~~--~~f~i~l 345 (348)
T PRK11073 307 --------G----RE-GGTGLGLSIARNLIDQHSGKIEFTSWPGH--TEFSVYL 345 (348)
T ss_pred --------C----CC-CCccCCHHHHHHHHHHcCCeEEEEecCCc--eEEEEEE
Confidence 0 01 123677643 34457888999987543 4555544
No 77
>PRK10490 sensor protein KdpD; Provisional
Probab=93.24 E-value=0.43 Score=64.20 Aligned_cols=99 Identities=20% Similarity=0.313 Sum_probs=61.4
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..++..||+||+.+.- ....|.|++..+.+ .|.|.|||.||+++++.++..... + +..
T Consensus 778 ~L~qVL~NLL~NAik~s~---~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~---~----------~~~-- 839 (895)
T PRK10490 778 LFERVLINLLENAVKYAG---AQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFA---R----------GNK-- 839 (895)
T ss_pred HHHHHHHHHHHHHHHhCC---CCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCc---c----------CCC--
Confidence 478899999999999942 23457777665544 478999999999999875321100 0 000
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
....+-.|+|+.. -.-.+|..+.+.|...+ ...+.+.+.
T Consensus 840 --~~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~-Gt~f~i~LP 881 (895)
T PRK10490 840 --ESAIPGVGLGLAICRAIVEVHGGTIWAENRPEG-GACFRVTLP 881 (895)
T ss_pred --CCCCCCccHHHHHHHHHHHHcCCEEEEEECCCC-eEEEEEEeE
Confidence 0111224677653 22247889999987643 345555554
No 78
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=93.01 E-value=0.46 Score=63.17 Aligned_cols=96 Identities=23% Similarity=0.133 Sum_probs=61.8
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeec---------------CC--eEEEEECCCCCChHhHhHhhhccccccc
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA---------------ED--KISVFDTGPGMDSTDENSIVKWGKMGAS 221 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~---------------~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S 221 (1576)
.+..++..|++||+.+.. ....|.|++... ++ .|.|.|||.||+++++..+.....
T Consensus 560 ~L~qvl~NLl~NAik~~~---~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~---- 632 (828)
T PRK13837 560 ELQQVLMNLCSNAAQAMD---GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFF---- 632 (828)
T ss_pred HHHHHHHHHHHHHHHHcc---cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcc----
Confidence 478999999999999852 234566666543 22 478999999999999875321110
Q ss_pred hhccccccccCCCCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000396 222 LHRASKAQGIGGKPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1576)
Q Consensus 222 ~~R~~~a~~~ggk~~~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~Ld~ 279 (1576)
+. + . +-.|+|+.. -+-.+|.++.|.|.. +....+.+.+..
T Consensus 633 ------------~~---~-~-~G~GLGL~i~~~iv~~~gG~i~v~s~~-g~Gt~f~i~LP~ 675 (828)
T PRK13837 633 ------------TT---R-A-GGTGLGLATVHGIVSAHAGYIDVQSTV-GRGTRFDVYLPP 675 (828)
T ss_pred ------------cC---C-C-CCCcchHHHHHHHHHHCCCEEEEEecC-CCeEEEEEEEeC
Confidence 00 1 1 445777653 233588899999875 333455555553
No 79
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=92.94 E-value=0.48 Score=63.74 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=61.7
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecC-----CeEEEEECCCCCChHhHhHhhhccccccchhccccccccCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAE-----DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGG 233 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~-----~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~gg 233 (1576)
.+..+|.-||.||+.++ ....|.|.+.... -.|.|.|||.||+++++.++...-. +.
T Consensus 565 ~L~QVL~NLL~NAik~t----~~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~---t~----------- 626 (894)
T PRK10618 565 ALRKILLLLLNYAITTT----AYGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFL---NQ----------- 626 (894)
T ss_pred HHHHHHHHHHHHHHHhC----CCCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccc---cC-----------
Confidence 57889999999999995 3345777766431 2588999999999999976321100 00
Q ss_pred CCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000396 234 KPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1576)
Q Consensus 234 k~~~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~Ld~ 279 (1576)
+ ...+..-| .|+|+.. -+-.+|..+.|.|... ....+.+.+..
T Consensus 627 ~-~~~~~~~G-tGLGLaI~k~Lve~~GG~I~v~S~~g-~GT~F~I~LPl 672 (894)
T PRK10618 627 T-QGDRYGKA-SGLTFFLCNQLCRKLGGHLTIKSREG-LGTRYSIHLKM 672 (894)
T ss_pred C-CCCCCCCC-cChhHHHHHHHHHHcCCEEEEEECCC-CcEEEEEEEEc
Confidence 0 00011112 3777643 2234889999999863 33455555553
No 80
>PRK03660 anti-sigma F factor; Provisional
Probab=92.84 E-value=0.77 Score=47.63 Aligned_cols=49 Identities=27% Similarity=0.458 Sum_probs=35.6
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCCh
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDS 206 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~ 206 (1576)
..+..|+.|++.||+...........|.|.+....+ .|.|.|+|.||+.
T Consensus 38 ~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 38 TEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 367899999999999764333222457777766544 4789999999985
No 81
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=92.57 E-value=0.58 Score=47.28 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=40.2
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHh
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDEN 210 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~ 210 (1576)
..+..|+.|++-||+.+.........|.|.+....+ .|.|.|+|.|+++..+.
T Consensus 30 ~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~ 84 (125)
T PF13581_consen 30 DDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLP 84 (125)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhcc
Confidence 368899999999999996443333567777666544 57799999999988764
No 82
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=92.36 E-value=0.5 Score=62.58 Aligned_cols=100 Identities=16% Similarity=0.259 Sum_probs=59.3
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEee--c-C----CeEEEEECCCCCChHhHhHhhhccccccchhcccccccc
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNI--A-E----DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGI 231 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~--~-~----~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ 231 (1576)
.+..+|..||+||+.+. ....|.|.+.. . . -.|.|.|||.||+++++.++..-.. |
T Consensus 408 ~l~~vl~NLl~NAik~~----~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~------~------- 470 (919)
T PRK11107 408 RLQQIITNLVGNAIKFT----ESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFR------Q------- 470 (919)
T ss_pred HHHHHHHHHHHHHhhcC----CCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhc------c-------
Confidence 36789999999999995 23345555543 1 1 2488999999999999875321100 0
Q ss_pred CCCCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 232 GGKPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 232 ggk~~~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
+.. ......|-.|+|+.. -+-.+|..+.|.|...+ ...+.+.+.
T Consensus 471 ~~~--~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~-Gt~f~i~lp 517 (919)
T PRK11107 471 ADA--SISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNR-GSTFWFHLP 517 (919)
T ss_pred CCC--CCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCC-CEEEEEEEE
Confidence 000 001123445777753 23348889999987642 234444444
No 83
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=91.94 E-value=0.69 Score=60.68 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=61.9
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeec-CC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~-~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~ 235 (1576)
.+..++..|++||+++. ....|.|.+... ++ .|.|.|||.||+++++.++..-.. + . +.
T Consensus 398 ~l~qvl~NLl~NAik~~----~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~---~---------~--~~ 459 (779)
T PRK11091 398 RLRQILWNLISNAVKFT----QQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYY---Q---------V--KD 459 (779)
T ss_pred HHHHHHHHHHHHHHHhC----CCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhh---c---------c--cC
Confidence 47889999999999995 334566766654 33 578999999999999876321100 0 0 00
Q ss_pred CCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000396 236 PYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1576)
Q Consensus 236 ~~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~Ld~ 279 (1576)
.......+--|+|+.. -.-.+|.++.|.|... ....+.+.+..
T Consensus 460 ~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g-~Gt~f~i~lP~ 505 (779)
T PRK11091 460 SHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEG-KGSCFTLTIHA 505 (779)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCC-CeEEEEEEEec
Confidence 0001112233666643 1223889999998763 33455555553
No 84
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=91.93 E-value=0.15 Score=66.31 Aligned_cols=94 Identities=23% Similarity=0.300 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHhhcchhccccCCCceEEEEE-Eee--c--CCeEE-----EEECCCCCChHhHhHhhhccccccchhcc
Q 000396 156 EDYTFETALADLIDNSLQAVWTNAKNERRLIS-VNI--A--EDKIS-----VFDTGPGMDSTDENSIVKWGKMGASLHRA 225 (1576)
Q Consensus 156 ~~Ysl~sALAELVDNSIDA~~~Na~A~rI~I~-I~~--~--~~~I~-----I~DNG~GMs~deL~~~~~wG~~g~S~~R~ 225 (1576)
+.-....|+|||+|||+|-.-. +++-+.|. |.. + -...+ |.|||.||.++-+...|.+ +++.+.
T Consensus 143 shk~a~~a~aeLldnalDEi~~--~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l---~~~~k~- 216 (775)
T KOG1845|consen 143 SHKWAKGAIAELLDNALDEITN--GATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSL---GYSSKK- 216 (775)
T ss_pred ccccccChhhhhcccccccccc--ccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHHHh---hhhhhh-
Confidence 3557788999999999999532 23322221 111 1 12233 3488999999988653322 222211
Q ss_pred ccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEee
Q 000396 226 SKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKT 266 (1576)
Q Consensus 226 ~~a~~~ggk~~~~~~~iGrFGvGlK~AsfsLG~~ltV~SK~ 266 (1576)
.....+|+||.|+++..+.+|..+.+.++.
T Consensus 217 -----------e~~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 217 -----------EANSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred -----------hhhhhhhhhccccccchhhhccceeEeehh
Confidence 235689999999999999999999999995
No 85
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=91.80 E-value=0.78 Score=61.97 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=62.0
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+..+|..||+||+.++ ....|.|.+..+.+ .|.|.|||.||+++++.++..-.. +....
T Consensus 562 ~L~qvl~NLl~NAik~t----~~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~------------~~~~~-- 623 (924)
T PRK10841 562 RLQQVISNLLSNAIKFT----DTGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFF------------QVGTG-- 623 (924)
T ss_pred HHHHHHHHHHHHHHhhC----CCCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccc------------cCCCC--
Confidence 47789999999999995 33456676665544 477999999999999876321110 00000
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~A---sfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
.....+-.|+|+..+ +-.+|..++|.|... ....+.+.+.
T Consensus 624 -~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g-~Gt~F~i~LP 666 (924)
T PRK10841 624 -VQRNFQGTGLGLAICEKLINMMDGDISVDSEPG-MGSQFTIRIP 666 (924)
T ss_pred -CCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCC-CcEEEEEEEE
Confidence 001112247777642 234788999999763 3344555554
No 86
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=91.75 E-value=1.1 Score=48.11 Aligned_cols=52 Identities=25% Similarity=0.345 Sum_probs=39.7
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHh
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDEN 210 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~ 210 (1576)
.+.-|+.|++-||+.+.........|.|.+....+ .|.|.|+|.|+++..+.
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~ 95 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFK 95 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhc
Confidence 58899999999999996443334567777766544 46699999999988764
No 87
>PRK10547 chemotaxis protein CheA; Provisional
Probab=91.17 E-value=1.2 Score=58.36 Aligned_cols=114 Identities=18% Similarity=0.107 Sum_probs=60.5
Q ss_pred HHHHHhhcchhccccCC---------CceEEEEEEeecCC--eEEEEECCCCCChHhHhH-hhhcccccc---chhccc-
Q 000396 163 ALADLIDNSLQAVWTNA---------KNERRLISVNIAED--KISVFDTGPGMDSTDENS-IVKWGKMGA---SLHRAS- 226 (1576)
Q Consensus 163 ALAELVDNSIDA~~~Na---------~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~-~~~wG~~g~---S~~R~~- 226 (1576)
.|..||.||+|+..... ....|.|+....++ .|.|.|||.||+++.+.. +..-|.... |.....
T Consensus 389 pL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~ 468 (670)
T PRK10547 389 PLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGM 468 (670)
T ss_pred HHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHH
Confidence 35689999999964321 12346676665544 478999999999998742 122222110 000000
Q ss_pred cccccCCCCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEE
Q 000396 227 KAQGIGGKPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHL 277 (1576)
Q Consensus 227 ~a~~~ggk~~~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~L 277 (1576)
.-+..|-+........+-.|+|+.. ..-.+|..+.|.|.. |....+.+.+
T Consensus 469 lIF~pgfst~~~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~-g~Gt~f~i~L 521 (670)
T PRK10547 469 LIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQ-GKGTTIRILL 521 (670)
T ss_pred HhhcCCcccccccccCCCCchhHHHHHHHHHHcCCEEEEEecC-CCcEEEEEEE
Confidence 0011111111111223445888853 344689999999976 3333344433
No 88
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=91.04 E-value=0.56 Score=59.45 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCC
Q 000396 160 FETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1576)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~~ 237 (1576)
+..++.|++.||+.+. .+..|.|++....+ .|.|.|||.||+++...
T Consensus 470 l~~il~ell~NA~kha----~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~~~~--------------------------- 518 (569)
T PRK10600 470 LLQIAREALSNALKHA----QASEVVVTVAQNQNQVKLSVQDNGCGVPENAER--------------------------- 518 (569)
T ss_pred HHHHHHHHHHHHHHhC----CCCeEEEEEEEcCCEEEEEEEECCCCCCccccC---------------------------
Confidence 6788999999999983 56677887766544 47899999999875310
Q ss_pred CCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 238 LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 238 ~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
..++|.+. ++.-+-.+|..+.+.|...+ .....+.+.
T Consensus 519 -~~glGL~i--~~~~~~~lgG~l~i~s~~~~-Gt~v~i~lp 555 (569)
T PRK10600 519 -SNHYGLII--MRDRAQSLRGDCRVRRRESG-GTEVVVTFI 555 (569)
T ss_pred -CCCccHHH--HHHHHHHcCCEEEEEECCCC-CEEEEEEEe
Confidence 01222222 23344569999999998644 333444444
No 89
>PRK13560 hypothetical protein; Provisional
Probab=91.02 E-value=0.6 Score=60.36 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcchhccccCCCceEEEEEEeec-CC--eEEEEECCCCCChH
Q 000396 160 FETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDST 207 (1576)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~rI~I~I~~~-~~--~I~I~DNG~GMs~d 207 (1576)
....|.+|+.||+.+........+|.|.+... .+ .|.|.|||.||+++
T Consensus 712 ~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 712 CGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 34478899999999853332345667766554 33 47899999999976
No 90
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.98 E-value=0.64 Score=65.28 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=42.8
Q ss_pred CCCCceeeeccccc-ccCchHHHHHHHHhcccccceEEEecHHHHHHHHHhh
Q 000396 1313 FMEDVVGPVALIGT-VCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYE 1363 (1576)
Q Consensus 1313 ~~~gV~G~Va~L~~-V~d~~la~als~~lG~~~m~~VV~~t~~~ak~le~Yl 1363 (1576)
..+||+ |++|.. |+ .+++.+++.++|+ .+..||+++.+.|+..+.+|
T Consensus 681 ~~~Gvl--vsel~~~v~-~~~~~~~~A~lg~-~~~~iVv~d~~~A~~ai~~L 728 (1486)
T PRK04863 681 RFGGVL--LSEIYDDVS-LEDAPYFSALYGP-ARHAIVVPDLSDAAEQLAGL 728 (1486)
T ss_pred hcCCee--hhHhhhccC-cchHHHHHHHHHh-hhCeEEeCCHHHHHHHHHhc
Confidence 579999 999999 85 7999999999999 69999999999999998888
No 91
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=89.95 E-value=1.2 Score=61.25 Aligned_cols=99 Identities=16% Similarity=0.242 Sum_probs=59.5
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEee---cC----CeEEEEECCCCCChHhHhHhhhccccccchhcccccccc
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNI---AE----DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGI 231 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~---~~----~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ 231 (1576)
.+..++..|++||+++.. ...+.|.+.. +. -.|.|.|||.||+++++.++..-.. +
T Consensus 828 ~l~qvl~NLl~NAik~~~----~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~------~------- 890 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTT----EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYS------Q------- 890 (1197)
T ss_pred HHHHHHHHHHHHHHHhCC----CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccc------c-------
Confidence 578899999999999952 2234444322 22 2378999999999999876321100 0
Q ss_pred CCCCCCCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEeh
Q 000396 232 GGKPPYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1576)
Q Consensus 232 ggk~~~~~~~iGrFGvGlK~A---sfsLG~~ltV~SK~~gs~~v~~l~Ld~ 279 (1576)
+ .... ..+-.|+|+..+ +-.+|..+.+.|... ....+++.+..
T Consensus 891 ~---~~~~-~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~-~Gt~f~i~lP~ 936 (1197)
T PRK09959 891 T---SAGR-QQTGSGLGLMICKELIKNMQGDLSLESHPG-IGTTFTITIPV 936 (1197)
T ss_pred c---ccCC-CCCCcCchHHHHHHHHHHcCCEEEEEeCCC-CcEEEEEEEEc
Confidence 0 0001 112358887542 334888999999764 23445555543
No 92
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=89.71 E-value=1.7 Score=57.17 Aligned_cols=97 Identities=21% Similarity=0.303 Sum_probs=60.4
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
=++.+|.-|+|||+-.. ....+|.|....+.. .+.|+|||.|++.++++.+. +.+..+++..
T Consensus 775 LieQVLiNLleNA~Kya---p~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IF-------------D~F~r~~~~~ 838 (890)
T COG2205 775 LIEQVLINLLENALKYA---PPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIF-------------DKFYRGNKES 838 (890)
T ss_pred HHHHHHHHHHHHHHhhC---CCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhh-------------hhhhcCCCCC
Confidence 37899999999999984 234556676665544 46699999999999997631 1121122211
Q ss_pred CCCCCccccccchhhhhhc-----ccCEEEEEEeeCCCceEEEEEEe
Q 000396 237 YLTPFFGMFGYGGPIASMH-----LGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 237 ~~~~~iGrFGvGlK~Asfs-----LG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
. +-|+|+-+|.+. .|.++.+.+...+. ..+.+.|.
T Consensus 839 ----~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gG-a~f~~~LP 878 (890)
T COG2205 839 ----A--TRGVGLGLAICRGIVEAHGGTISAENNPGGG-AIFVFTLP 878 (890)
T ss_pred ----C--CCCccccHHHHHHHHHHcCCeEEEEEcCCCc-eEEEEEee
Confidence 1 334444333332 78899999965443 34445444
No 93
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=88.55 E-value=2 Score=56.55 Aligned_cols=118 Identities=19% Similarity=0.144 Sum_probs=72.1
Q ss_pred HHHHHHhhcchhccccCC-------C--ceEEEEEEeecCCe--EEEEECCCCCChHhHhH-hhhccccccchh-cccc-
Q 000396 162 TALADLIDNSLQAVWTNA-------K--NERRLISVNIAEDK--ISVFDTGPGMDSTDENS-IVKWGKMGASLH-RASK- 227 (1576)
Q Consensus 162 sALAELVDNSIDA~~~Na-------~--A~rI~I~I~~~~~~--I~I~DNG~GMs~deL~~-~~~wG~~g~S~~-R~~~- 227 (1576)
.-|.=||.||+|....-+ + .-+|.++-.-.++. |.|.|||.||+++-+.. ++.=|.+..... +..+
T Consensus 435 dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~ 514 (716)
T COG0643 435 DPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDE 514 (716)
T ss_pred ccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHH
Confidence 345558999999975431 1 23566665555554 66999999999999853 333343332211 1111
Q ss_pred -----ccccCCCCCCCCCCccccccch---hhhhhcccCEEEEEEeeC-CCceEEEEEEeh
Q 000396 228 -----AQGIGGKPPYLTPFFGMFGYGG---PIASMHLGRRALVSSKTK-VSKEVYTLHLEK 279 (1576)
Q Consensus 228 -----a~~~ggk~~~~~~~iGrFGvGl---K~AsfsLG~~ltV~SK~~-gs~~v~~l~Ld~ 279 (1576)
-+..|-++...-..++=-|||| |...-.+|.++.|.|+.- |......+.+..
T Consensus 515 Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLTL 575 (716)
T COG0643 515 EILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLTL 575 (716)
T ss_pred HHHHHHhcCCCCcchhhhcccCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecCcHH
Confidence 1334545554556666669998 467778999999999983 344444444444
No 94
>PRK13557 histidine kinase; Provisional
Probab=88.31 E-value=2.5 Score=52.02 Aligned_cols=97 Identities=20% Similarity=0.091 Sum_probs=58.0
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEee---------------cC--CeEEEEECCCCCChHhHhHhhhccccccc
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNI---------------AE--DKISVFDTGPGMDSTDENSIVKWGKMGAS 221 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~---------------~~--~~I~I~DNG~GMs~deL~~~~~wG~~g~S 221 (1576)
.+..++..|+.||++|.. ....+.|.... .+ -.|.|.|||.||+++.+..+ .....+
T Consensus 277 ~l~~vl~nll~NA~~~~~---~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~i---f~~~~~ 350 (540)
T PRK13557 277 QAEVALLNVLINARDAMP---EGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARV---MDPFFT 350 (540)
T ss_pred HHHHHHHHHHHHHHHhcc---cCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhc---cCCCcc
Confidence 367899999999999952 22345554431 11 24889999999999988652 111111
Q ss_pred hhccccccccCCCCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 222 LHRASKAQGIGGKPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 222 ~~R~~~a~~~ggk~~~~~~~iGrFGvGlK~---AsfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
. ....+-.|+|+.. ..-.+|..+.+.|... ....+++.+.
T Consensus 351 ~----------------~~~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~-~G~~f~i~lP 393 (540)
T PRK13557 351 T----------------KEEGKGTGLGLSMVYGFAKQSGGAVRIYSEVG-EGTTVRLYFP 393 (540)
T ss_pred c----------------CCCCCCCCccHHHHHHHHHHCCCEEEEEecCC-CceEEEEEee
Confidence 0 0111233677643 2334889999998763 3345555554
No 95
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=88.10 E-value=1.3 Score=53.74 Aligned_cols=105 Identities=19% Similarity=0.226 Sum_probs=67.5
Q ss_pred CHHHHHHHHhhcchhccccCCC-----ceEEEEEEeec--CCeEEEEECCCCCChHhHhHhhhccccccchhcccccccc
Q 000396 159 TFETALADLIDNSLQAVWTNAK-----NERRLISVNIA--EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGI 231 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~-----A~rI~I~I~~~--~~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ 231 (1576)
.+..++-||..||..|+..... -..|.|.|..+ .-.|.|.|-|.|++.++++.+.+|+..- ++... .
T Consensus 260 hL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~yST---a~~~~---~ 333 (414)
T KOG0787|consen 260 HLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYST---APAPS---S 333 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhccc---CCCCC---C
Confidence 5889999999999999865421 22355555543 4568899999999999998866665432 22111 1
Q ss_pred CCCCCCCCCCccccccchhhh---hhcccCEEEEEEeeCCCceE
Q 000396 232 GGKPPYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEV 272 (1576)
Q Consensus 232 ggk~~~~~~~iGrFGvGlK~A---sfsLG~~ltV~SK~~gs~~v 272 (1576)
. +.....+-=||+|+..+ +=++|..+.+.|-.-=...+
T Consensus 334 d---~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~ 374 (414)
T KOG0787|consen 334 D---NNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDV 374 (414)
T ss_pred C---CCCcCcccccccCCcHHHHHHHHhCCCeeEEeeeccccce
Confidence 1 11123455578888753 33477788888876433333
No 96
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=85.89 E-value=2.4 Score=41.53 Aligned_cols=64 Identities=17% Similarity=0.033 Sum_probs=45.1
Q ss_pred EeccCCcccccCCccccceEEEEecccCCCcCCCcceEEEEeeeeecccCCcceecCCCcceecc
Q 000396 984 AVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLS 1048 (1576)
Q Consensus 984 ~l~P~~~e~li~g~~~~~~~vqvfD~~gN~~~~g~~V~i~l~gl~~~~~~~~~~k~~~~G~~~l~ 1048 (1576)
.|.+.-...+.+|.-..-+.++|.|+.||+++. .+|.+.++|=......+....+|.+|++-+.
T Consensus 4 ~l~~~~~~~~Adg~d~~~i~v~v~D~~Gnpv~~-~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~ 67 (92)
T smart00634 4 TLTADKDTAVANGSDAITLTATVTDANGNPVAG-QEVTFTTPSGGALTLSKGTATTDANGIATVT 67 (92)
T ss_pred EEEeCCCcEEEcCcccEEEEEEEECCCCCCcCC-CEEEEEECCCceeeccCCeeeeCCCCEEEEE
Confidence 344443344567778888999999999999998 7799888831111112356789999998765
No 97
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=85.09 E-value=3.1 Score=51.93 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=37.8
Q ss_pred CHHHHHHHHhhcchhccccCCCc-eEEEEEEeecCC--eEEEEECCCCCChHhHhH
Q 000396 159 TFETALADLIDNSLQAVWTNAKN-ERRLISVNIAED--KISVFDTGPGMDSTDENS 211 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A-~rI~I~I~~~~~--~I~I~DNG~GMs~deL~~ 211 (1576)
.|.-.|-=|||||+.|....... -.|.|......+ .+.|.|||.||++..+..
T Consensus 350 ~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 350 DPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred CchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 57788889999999997555222 245554444444 366999999999988754
No 98
>PRK13559 hypothetical protein; Provisional
Probab=85.04 E-value=2.1 Score=50.46 Aligned_cols=48 Identities=19% Similarity=0.100 Sum_probs=34.2
Q ss_pred HHHHHHHHhhcchhccccCCCceEEEEEEe--ecC--CeEEEEECCCCCChH
Q 000396 160 FETALADLIDNSLQAVWTNAKNERRLISVN--IAE--DKISVFDTGPGMDST 207 (1576)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~rI~I~I~--~~~--~~I~I~DNG~GMs~d 207 (1576)
+..++-||+.||+.+........+|.|.+. ... -.|.|.|||.||+++
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC
Confidence 567899999999998432334467778773 333 357789999998754
No 99
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=84.04 E-value=8.7 Score=41.37 Aligned_cols=52 Identities=19% Similarity=0.441 Sum_probs=38.7
Q ss_pred CCHHHHHHHHhhcchhccccCCCc-eEEEEEEeec--CCeEEEEECCCCCChHhH
Q 000396 158 YTFETALADLIDNSLQAVWTNAKN-ERRLISVNIA--EDKISVFDTGPGMDSTDE 209 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A-~rI~I~I~~~--~~~I~I~DNG~GMs~deL 209 (1576)
+.+..|+.|++.|++.+.-++... ..|.|.+... +-.|.|+|-|.|+..-+.
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~~~~~ 93 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIEDLEE 93 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCeEEEEEEeCCCCCCCHHH
Confidence 478999999999999996554332 5677776664 456889999977765554
No 100
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=82.59 E-value=0.84 Score=59.81 Aligned_cols=56 Identities=20% Similarity=0.346 Sum_probs=45.8
Q ss_pred EEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000396 195 ISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1576)
Q Consensus 195 I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~~~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~ 270 (1576)
++..|||.||+++++..+..|+. ....+|.||-|+|..+|.+|+.+.+.|+..+..
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~f~~--------------------~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~ 57 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAINFAV--------------------GLYGIGDYGNGLKSGSMRIGKDFILFTKKESTM 57 (775)
T ss_pred cccccCCCCcCchhhhhhhhhcc--------------------cccccccccCcccccccccCcccceeecccccc
Confidence 56789999999999976544421 244799999999999999999999999986644
No 101
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=82.02 E-value=2 Score=49.01 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=39.3
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeecCC----eEEEEECCCCCChH
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAED----KISVFDTGPGMDST 207 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~----~I~I~DNG~GMs~d 207 (1576)
.++--++-||+-||+-+.....+..+|.|.+....+ .+.|+|||.|++.+
T Consensus 121 ~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 121 VPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 356678999999999996655456778888877533 68899999999865
No 102
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=80.16 E-value=4.9 Score=48.28 Aligned_cols=91 Identities=20% Similarity=0.198 Sum_probs=64.0
Q ss_pred HHHHHHHHhhcchhccccCCCceEEEEEEeec--CCeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCC
Q 000396 160 FETALADLIDNSLQAVWTNAKNERRLISVNIA--EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1576)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~rI~I~I~~~--~~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~~ 237 (1576)
..+|+--.++.|+...-+.++|++|.|.+.-. .-.+.|.|||.|.+..+...
T Consensus 356 ~~talyRv~QEaltNIErHa~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~~-------------------------- 409 (459)
T COG4564 356 VATALYRVVQEALTNIERHAGATRVTILLQQMGDMVQLMVRDNGVGFSVKEALQ-------------------------- 409 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCcceEEEEecCCCCccchhhcc--------------------------
Confidence 56788888888888877778999999988764 44578999999999988743
Q ss_pred CCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEe
Q 000396 238 LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 238 ~~~~iGrFGvGlK~AsfsLG~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
.+.++|--.|-. -.-++|..++|.|...|-+-.-.+.++
T Consensus 410 ~~~GiGLRNMrE--Rma~~GG~~~v~s~p~GTel~v~Lp~~ 448 (459)
T COG4564 410 KRHGIGLRNMRE--RMAHFGGELEVESSPQGTELTVLLPLD 448 (459)
T ss_pred CccccccccHHH--HHHHhCceEEEEecCCCcEEEEEecch
Confidence 012333333322 233689999999999875544444443
No 103
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=77.77 E-value=4.5 Score=51.23 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=55.4
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeec--CCeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA--EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~--~~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~~~a~~~ggk~~ 236 (1576)
.+-.-++|-+-|++-. +.|++|.|.+... .-.+.|.|||+|++..+-
T Consensus 481 HlLqIvREAlsNa~KH----a~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~~e--------------------------- 529 (574)
T COG3850 481 HLLQIVREALSNAIKH----AQASEIKVTVSQNDGQVTLTVEDNGVGIDEAAE--------------------------- 529 (574)
T ss_pred HHHHHHHHHHHHHHHh----cccCeEEEEEEecCCeEEEEEeeCCcCCCCccC---------------------------
Confidence 4556788888888877 5889988888775 346889999999997732
Q ss_pred CCCCCccccccc-hhhhhhcccCEEEEEEeeCCCceE
Q 000396 237 YLTPFFGMFGYG-GPIASMHLGRRALVSSKTKVSKEV 272 (1576)
Q Consensus 237 ~~~~~iGrFGvG-lK~AsfsLG~~ltV~SK~~gs~~v 272 (1576)
..|.||+= |---+-+++..+.|..+..|...+
T Consensus 530 ----~~gHyGL~IM~ERA~~L~~~L~i~~~~~gGT~V 562 (574)
T COG3850 530 ----PSGHYGLNIMRERAQRLGGQLRIRRREGGGTEV 562 (574)
T ss_pred ----CCCCcchHHHHHHHHHhcCeEEEeecCCCCeEE
Confidence 23355541 111344788888998888776544
No 104
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=75.71 E-value=15 Score=49.49 Aligned_cols=47 Identities=19% Similarity=0.408 Sum_probs=39.3
Q ss_pred CCCCceeeecccccccCchHHHHHHHHhcccccceEEEecHHHHHHH
Q 000396 1313 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFAL 1359 (1576)
Q Consensus 1313 ~~~gV~G~Va~L~~V~d~~la~als~~lG~~~m~~VV~~t~~~ak~l 1359 (1576)
+-..|+|.+.-=..|.+.++|.+|+.++|-+...+.||.+++.-..+
T Consensus 446 FK~~vyeP~~m~l~~k~~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf 492 (1072)
T KOG0979|consen 446 FKDEVYEPPIMTLNVKNAEFAKYLENFVGFNDLKAFICCDSEDYLLF 492 (1072)
T ss_pred hcccccCCceEEEecCChHHHHHHHcccCccccceeeeechHHHHHH
Confidence 66899999655566778999999999999999999999999844333
No 105
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=74.11 E-value=7 Score=47.53 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=35.5
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeecCC--eEEEEECCCCCChH
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDST 207 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~--~I~I~DNG~GMs~d 207 (1576)
.+++.-.-|+..|=... ++|+.|+|.+..++. .+.|.|||.|+++.
T Consensus 409 vTLyRl~QE~LNNI~KH----A~AS~V~i~l~~~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 409 VTLYRLCQELLNNICKH----ADASAVTIQLWQQDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred EeHHHHHHHHHHHHHhc----cccceEEEEEeeCCcEEEEEEecCCcCCCCC
Confidence 35666777777776655 589999998877654 57799999999976
No 106
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=71.70 E-value=4.7 Score=50.60 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcchhccccCCCceEEEEEEeec-CC--eEEEEECCCCCChH
Q 000396 160 FETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDST 207 (1576)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~rI~I~I~~~-~~--~I~I~DNG~GMs~d 207 (1576)
+...+.+++.||+.+. .+..|.|.+... .+ .|.|.|||.||+++
T Consensus 472 l~qv~~nll~NA~k~~----~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHA----NASEIAVSCVTNPDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcC----CCCeEEEEEEEcCCCEEEEEEEECCcCcCCC
Confidence 5678999999999973 455677777654 33 48899999999875
No 107
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=63.92 E-value=18 Score=36.30 Aligned_cols=64 Identities=22% Similarity=0.184 Sum_probs=42.3
Q ss_pred ccCCccccceEEEEecccCCCcCCCcceEE--EEeeeeecccCCcceecCCCcceeccc------eeEEEeecC
Q 000396 993 LLPGSVIKMLKLEMFDAFYNNVKKGLEVEL--NVDGFCIEDQLGLRRKVDGYGCIDLSG------LLKVKAGYG 1058 (1576)
Q Consensus 993 li~g~~~~~~~vqvfD~~gN~~~~g~~V~i--~l~gl~~~~~~~~~~k~~~~G~~~l~g------~l~v~a~y~ 1058 (1576)
+.+|.-...+.+.|.|++|||++ |..|.+ .-.+-.+.+. +....+|++|.+-+.- ...|+|.+.
T Consensus 18 ~a~g~~~~tltatV~D~~gnpv~-g~~V~f~~~~~~~~l~~~-~~~~~Td~~G~a~~tltst~aG~~~VtA~~~ 89 (100)
T PF02369_consen 18 VADGSDTNTLTATVTDANGNPVP-GQPVTFSSSSSGGTLSPT-NTSATTDSNGIATVTLTSTKAGTYTVTATVD 89 (100)
T ss_dssp ESSSSS-EEEEEEEEETTSEB-T-S-EEEE--EESSSEES-C-EE-EEE-TTSEEEEEEE-SS-EEEEEEEEET
T ss_pred EeCCcCcEEEEEEEEcCCCCCCC-CCEEEEEEcCCCcEEecC-ccccEECCCEEEEEEEEecCceEEEEEEEEC
Confidence 46677778899999999999997 588998 3346666664 2268999999986543 455555554
No 108
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=54.61 E-value=20 Score=47.69 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=51.5
Q ss_pred ccccccCCCHHHHhhCCCCCCHHHHHHHHhhcchhccccCCCceEEEEEEeecCCeEEEEECCCCCChHhHh
Q 000396 139 ENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDEN 210 (1576)
Q Consensus 139 ~n~~dL~P~~~lL~~l~~~Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~~I~I~DNG~GMs~deL~ 210 (1576)
+.+|--+|..+-+..-+.---+..-.-|+++||.| ....++-..|.+.|+-+.+.|.|.+||.|+.-+...
T Consensus 33 ~~~wv~~~e~~k~~~~t~~pGl~ki~dEilvNaad-k~rd~~m~~i~v~i~~e~~~isv~nnGkGIPv~~H~ 103 (842)
T KOG0355|consen 33 QLMWVYDMEKRKMVQRTYVPGLYKIFDEILVNAAD-KQRDPKMNTIKVTIDKEKNEISVYNNGKGIPVTIHK 103 (842)
T ss_pred eEEeeeccccCceeEeecCCcHHHHHHHHhhcccc-cccCCCcceeEEEEccCCCEEEEEeCCCcceeeecc
Confidence 67777766666332222223578888999999999 544445566777777789999999999999877553
No 109
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=53.61 E-value=21 Score=46.25 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcchhccccCC----CceEEEEEEeecCCe--EEEEECCCCCChHhHhH
Q 000396 160 FETALADLIDNSLQAVWTNA----KNERRLISVNIAEDK--ISVFDTGPGMDSTDENS 211 (1576)
Q Consensus 160 l~sALAELVDNSIDA~~~Na----~A~rI~I~I~~~~~~--I~I~DNG~GMs~deL~~ 211 (1576)
+-.|+--|+.||.+|.-.+. ....|.++.+...+. +.|.|||.|.+.+++++
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r 658 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHR 658 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhh
Confidence 56899999999999964431 112345555544554 55999999999999876
No 110
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=52.05 E-value=47 Score=40.22 Aligned_cols=97 Identities=24% Similarity=0.280 Sum_probs=57.7
Q ss_pred CHHHHHHHHhhcchhccccCCC--c-----eEEEEEEeec------CCeEEEEECCCCCChHhHhHhhhccccccchhcc
Q 000396 159 TFETALADLIDNSLQAVWTNAK--N-----ERRLISVNIA------EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRA 225 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~--A-----~rI~I~I~~~------~~~I~I~DNG~GMs~deL~~~~~wG~~g~S~~R~ 225 (1576)
.+..|+--||.||.+|...++. . ++.-+.+.+. .-.|.|.|||.|++++-...+...-..
T Consensus 241 qliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs------- 313 (363)
T COG3852 241 QLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVS------- 313 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccc-------
Confidence 4779999999999999765432 1 2223333332 245789999999998866552211110
Q ss_pred ccccccCCCCCCCCCCccccccchhhhhhcc---cCEEEEEEeeCCCceEEEEEEe
Q 000396 226 SKAQGIGGKPPYLTPFFGMFGYGGPIASMHL---GRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 226 ~~a~~~ggk~~~~~~~iGrFGvGlK~AsfsL---G~~ltV~SK~~gs~~v~~l~Ld 278 (1576)
+ .-|=-|+|+.+|.=-+ |..++..|... ..++.+.+.
T Consensus 314 -------~-------r~~GsGLGLala~~li~qH~G~Ie~~S~Pg--~T~FrvllP 353 (363)
T COG3852 314 -------G-------REGGTGLGLALAQNLIDQHGGKIEFDSWPG--RTVFRVLLP 353 (363)
T ss_pred -------c-------CCCCccccHHHHHHHHHhcCCEEEEeccCC--ceEEEEEee
Confidence 0 1111288887765443 45677777663 345555554
No 111
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=49.84 E-value=10 Score=32.85 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=14.6
Q ss_pred hh-hhcccceEEEEEEec
Q 000396 829 KL-FQNAGAYTFSFHLTE 845 (1576)
Q Consensus 829 ~~-f~k~G~Y~l~f~~~~ 845 (1576)
+| |.++|.|+|+|+..+
T Consensus 6 nW~FT~PG~Y~l~~~a~~ 23 (41)
T TIGR03769 6 NWVFTKPGTYTLTVQATA 23 (41)
T ss_pred ceeeCCCeEEEEEEEEEE
Confidence 44 999999999998765
No 112
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=47.61 E-value=43 Score=36.87 Aligned_cols=104 Identities=12% Similarity=-0.006 Sum_probs=66.3
Q ss_pred cccCceEEEEEEEeCCceeccCceEEEecccccccccceeeeeeeeeeeeC-cCCCCCCceEEEeeccccCCcCCceeec
Q 000396 596 ISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEG-LQGDAGGEARIICRPLAVPDEKGCVLAV 674 (1576)
Q Consensus 596 ~~~~~~~~~~~i~~~~~~~~~Gq~Vk~~k~~~~g~~~~~~y~ti~~f~~~~-~~~~~gge~~i~~~P~~~~~~~~~~l~~ 674 (1576)
.+....+.|++++++|..|+.||-|-+.-+..+ .+-|.|..+..+. =+|...-.++--+||.++..... ..
T Consensus 12 ~~~~~~~~Y~s~~~~g~~y~lGD~Vlv~s~~~~-----~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~~~~~~---~~ 83 (159)
T cd04715 12 GKKKDGQFYRSFTYDGVEYRLYDDVYVHNGDSE-----PYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMELK---GE 83 (159)
T ss_pred cccCCceEEEEEEECCEEEeCCCEEEEeCCCCC-----CEEEEEEEEEEcCCcCCceEEEEEeeeCHHHhccccc---cC
Confidence 344556899999999999999999999833222 5569999988542 12455666777788887742211 00
Q ss_pred cC-CCCccccc------cccccccceecCCccccCChhhHH
Q 000396 675 NN-GNASLHIG------SSLSLPIGVIDSEKCVPVNKNVWD 708 (1576)
Q Consensus 675 ~~-~~~~~~~~------~~~~~pi~~id~~~~~~v~~~~~~ 708 (1576)
.. ..--+.+. ..-.-||.-| .+||.+++-.+..
T Consensus 84 ~~~~~nEvFlS~~~d~~~~~~n~l~sI-~gKC~Vl~~~ey~ 123 (159)
T cd04715 84 PKRHINEVFLACGRGEGLANINLLESI-IGKCNVVCISEDF 123 (159)
T ss_pred cccCCCcEEEecCcCccccccCcHHHc-cceeEEEEehHhh
Confidence 00 00111111 1234678888 8999998877765
No 113
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.24 E-value=54 Score=45.29 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=34.0
Q ss_pred eecccccccCchHHHHHHHHhcccccceEEEecHHHHHHHHHhhhcC
Q 000396 1320 PVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDG 1366 (1576)
Q Consensus 1320 ~Va~L~~V~d~~la~als~~lG~~~m~~VV~~t~~~ak~le~Ylke~ 1366 (1576)
-.-+|.+|.|+++..|+=-+|+ +.+||++.+.|.++- |-+++
T Consensus 695 RLfDLv~~~d~~~r~aFYfaLr----dtLV~d~LeQAtRia-ygk~r 736 (1293)
T KOG0996|consen 695 RLFDLVKCKDEKFRPAFYFALR----DTLVADNLEQATRIA-YGKDR 736 (1293)
T ss_pred hHhhhhccCCHHHHHHHHHHHh----hhhhhcCHHHHHHHh-hcCCC
Confidence 3457889999999999966665 579999999999997 76554
No 114
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=45.79 E-value=50 Score=43.17 Aligned_cols=51 Identities=27% Similarity=0.264 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcchhccccCCCceEEEEEEee--cCCeEEEEECCCCCChHhHhHh
Q 000396 160 FETALADLIDNSLQAVWTNAKNERRLISVNI--AEDKISVFDTGPGMDSTDENSI 212 (1576)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~A~rI~I~I~~--~~~~I~I~DNG~GMs~deL~~~ 212 (1576)
+.....-||.||+-...+ .+..|.|..+. +...+.|.|||.|+++.-+.++
T Consensus 637 l~qv~~NLi~Naik~~~~--e~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~ri 689 (750)
T COG4251 637 LGQVFQNLIANAIKFGGP--ENPDIEISAERQEDEWTFSVRDNGIGIDPAYFERI 689 (750)
T ss_pred HHHHHHHHHhhheecCCC--CCCceEEeeeccCCceEEEecCCCCCcCHHHHHHH
Confidence 556677888999887421 24677777655 4677999999999999988763
No 115
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=40.98 E-value=71 Score=34.50 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=62.1
Q ss_pred eEEEEEEEeCCceeccCceEEEecccccccccceeeeeeeeeeeeCcCCCCCCceEEEeeccccCCcCCceeeccCCCCc
Q 000396 601 ARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNAS 680 (1576)
Q Consensus 601 ~~~~~~i~~~~~~~~~Gq~Vk~~k~~~~g~~~~~~y~ti~~f~~~~~~~~~gge~~i~~~P~~~~~~~~~~l~~~~~~~~ 680 (1576)
-+-|++++.+|.+|+.||-|-+.-+ .+ ..-+.|.|..+..+. +|...-.|+--+||-++....+-.+...+..-=
T Consensus 8 ~~~y~s~~~dg~~y~vgD~Vlv~~~--~~--~~pyI~~I~~i~~~~-~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~El 82 (146)
T cd04713 8 KCHYTSFEKDGNKYRLEDCVLLVPE--DD--QKPYIAIIKDIYKQE-EGSLKLEVQWLYRPEEIEKKKGGNWKAEDPREL 82 (146)
T ss_pred eeeeeeEEECCEEEECCCEEEEeCC--CC--CCCEEEEEEEEEEcC-CCCEEEEEEeeECHHHhccccccccccCCCCeE
Confidence 3789999999999999999998722 11 224568888877332 245555666677888885432211111222333
Q ss_pred cccccccccccceecCCccccCCh
Q 000396 681 LHIGSSLSLPIGVIDSEKCVPVNK 704 (1576)
Q Consensus 681 ~~~~~~~~~pi~~id~~~~~~v~~ 704 (1576)
|.....-..|+.-| .+||.++..
T Consensus 83 F~S~~~d~~~~~~I-~gkc~V~~~ 105 (146)
T cd04713 83 FYSFHRDEVPAESV-LHPCKVAFV 105 (146)
T ss_pred EEeCCCCcCCHHHC-cceeEEEEC
Confidence 44445556788888 788877643
No 116
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=40.24 E-value=53 Score=31.37 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=34.6
Q ss_pred EEEEccCCceEEEEeeCCCCCccHHHHHhhhhhhhccccccc--cccccceeecccC
Q 000396 41 FKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRH--DSMKRKRKINWNG 95 (1576)
Q Consensus 41 f~~llpng~~~~l~~~~p~~~~~~~~f~~lv~~~~~~~~~~~--~~~~~~~~~~~~~ 95 (1576)
.+|.||||.++.+.++. +++++|++.-+=+-+.....++ -....+..++||-
T Consensus 3 ~~v~LP~~q~t~V~vrp---g~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRP---GMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEETTTEEEEEEE-T---TSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred EEEECCCCCEEEEEEcC---CCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence 36899999999999875 5999999988655555544344 1222567777865
No 117
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.57 E-value=50 Score=36.09 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=36.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhhcccchhhe
Q 000396 1234 SEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVIC 1298 (1576)
Q Consensus 1234 ~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~~~~~~~~E~i~k~I~~~e~~aa~i~~ 1298 (1576)
+++..+..+|.++.+++..|+++..+++.++..|.+.+- -+++..+|.+++.....+..
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t------~~el~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT------NEELREEIEELEEEIEELEE 130 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777776666666666665442 45566666665554444333
No 118
>PF14501 HATPase_c_5: GHKL domain
Probab=38.28 E-value=43 Score=33.03 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=30.2
Q ss_pred CCHHHHHHHHhhcchhccccCCCceEEEEEEeecCCeEE-EEECC
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKIS-VFDTG 201 (1576)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~~~I~-I~DNG 201 (1576)
.++...++-|+|||++|.....+.+.|.|.+...++.+. ..-|-
T Consensus 4 ~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~~~i~i~N~ 48 (100)
T PF14501_consen 4 LDLCRILGNLLDNAIEACKKYEDKRFISISIREENGFLVIIIENS 48 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEEC
Confidence 467789999999999997655445567777666555433 34444
No 119
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=36.94 E-value=51 Score=40.53 Aligned_cols=102 Identities=26% Similarity=0.335 Sum_probs=60.1
Q ss_pred CHHHHHHHHhhcchhccccCCCceEEEEEEeecC--CeEEEEECCCCCChHhHhHhhh-ccccccchhccccccccCCCC
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENSIVK-WGKMGASLHRASKAQGIGGKP 235 (1576)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~~--~~I~I~DNG~GMs~deL~~~~~-wG~~g~S~~R~~~a~~~ggk~ 235 (1576)
.+...|--+|-||+-.- ++..+|++++.... -.|+|.|.|.|++.+++.++.. |. |-.+|
T Consensus 342 K~tQVldNii~NA~KYs---P~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfy-------RvdkA------- 404 (459)
T COG5002 342 KMTQVLDNIISNALKYS---PDGGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFY-------RVDKA------- 404 (459)
T ss_pred HHHHHHHHHHHHHhhcC---CCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHh-------hhhhh-------
Confidence 46678888888888873 34567777776533 4588999999999999975321 11 11111
Q ss_pred CCCCCCccccccchhhhhh---cccCEEEEEEeeCCCceEEEEEEehh
Q 000396 236 PYLTPFFGMFGYGGPIASM---HLGRRALVSSKTKVSKEVYTLHLEKE 280 (1576)
Q Consensus 236 ~~~~~~iGrFGvGlK~Asf---sLG~~ltV~SK~~gs~~v~~l~Ld~e 280 (1576)
-....|-=|+|+..|-= ..|..+=..|. .|...++.+++..+
T Consensus 405 --RsR~~gGTGLGLaIakeiV~~hgG~iWA~s~-~gkgtt~~ftLPy~ 449 (459)
T COG5002 405 --RSRKMGGTGLGLAIAKEIVQAHGGRIWAESE-EGKGTTFSFTLPYS 449 (459)
T ss_pred --hhhcCCCCchhHHHHHHHHHHhCCeEEEecc-cCCceEEEEEeccc
Confidence 01134444888754321 13444434444 45556667777663
No 120
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=36.47 E-value=52 Score=41.59 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=44.6
Q ss_pred HHHhhCCCCCCHHHHHHHHhhcchhccccCCCceEEEEEEeec---CCeEEEEECCCCCChHhHhH
Q 000396 149 DLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIA---EDKISVFDTGPGMDSTDENS 211 (1576)
Q Consensus 149 ~lL~~l~~~Ysl~sALAELVDNSIDA~~~Na~A~rI~I~I~~~---~~~I~I~DNG~GMs~deL~~ 211 (1576)
+.+.-++...+++..+--|+-||+||... .+..|.|.+..+ .-.|.|.|||.|-..+-+..
T Consensus 554 D~~~V~gd~v~ieQVlvNl~~NaldA~~h--~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dk 617 (673)
T COG4192 554 DDLMVMGDAVSIEQVLVNLIVNALDASTH--FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDK 617 (673)
T ss_pred ccceecchhhhHHHHHHHHHHHHHhhhcc--CCceEEEEeecCcccceEEEEecCCCCCchhHHHH
Confidence 45555666789999999999999999532 234455544432 35688999999999877665
No 121
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.05 E-value=77 Score=34.66 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=34.4
Q ss_pred cHHHHHHHHhhhhhhhhHHHHHHHHHHH---------HHHHHHHHHHHHhccccc
Q 000396 1229 VNELESEVRNYGLCIGRHEKALKLLNDQ---------KMEVEEVLSKLQVSVEPY 1274 (1576)
Q Consensus 1229 ~~~~q~~l~~lg~~i~~~e~~l~~L~~e---------~~~l~~~i~~l~~~l~~~ 1274 (1576)
-..+++++..+..+++.++.+|+.|.++ ..++++++..++..|+.+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888889999999888888877665 456666666666666655
No 122
>PRK02119 hypothetical protein; Provisional
Probab=30.84 E-value=1.5e+02 Score=28.77 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=38.8
Q ss_pred cHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhh
Q 000396 1229 VNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIY 1290 (1576)
Q Consensus 1229 ~~~~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~~~~~~~~E~i~k~I~~~e 1290 (1576)
...+++.+..|-.++...|+-+..|+....+-...|..|+..|. .+..++++.+
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~--------~L~~rl~~~~ 57 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLR--------YMANKLKDMQ 57 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhc
Confidence 34567778777788888888888888777777777777777766 5666665544
No 123
>PRK00295 hypothetical protein; Provisional
Probab=29.98 E-value=1.6e+02 Score=28.23 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=36.7
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhh
Q 000396 1232 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIY 1290 (1576)
Q Consensus 1232 ~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~~~~~~~~E~i~k~I~~~e 1290 (1576)
+++.+..|-.++...|+-+..|+....+-...|..|+..+. .+.+++++.+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~--------~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMA--------ALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhh
Confidence 45677777777777788788887777777777777777666 5666666554
No 124
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=29.77 E-value=2.5e+02 Score=28.24 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=37.1
Q ss_pred CCCceeeecccccccCchHHHHHHHHhcccccceEEEecHHHHHHH
Q 000396 1314 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFAL 1359 (1576)
Q Consensus 1314 ~~gV~G~Va~L~~V~d~~la~als~~lG~~~m~~VV~~t~~~ak~l 1359 (1576)
.++-.+...++..++|+++..++...+|. .+||+|.+.|++|
T Consensus 78 ~~~~~~~l~d~i~~~d~~~~~~~~~llg~----~~vv~~l~~A~~l 119 (120)
T PF06470_consen 78 PPGGAGPLIDLIEFPDEEYRPALEFLLGD----VVVVDDLEEARKL 119 (120)
T ss_dssp STTSEEEGGGGEEESCGGGHHHHHHHHTT----EEEESSHHHHHHH
T ss_pred CCcchHHHHHhcccCcHHHHHHHHHHcCC----EEEECCHHHHHHh
Confidence 35788889999999778999999999885 8999999999876
No 125
>PRK11637 AmiB activator; Provisional
Probab=29.74 E-value=69 Score=40.03 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=24.7
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000396 1231 ELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVE 1272 (1576)
Q Consensus 1231 ~~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~ 1272 (1576)
.++++++.+-.+|++++.+++.+++++++++.++..+...+.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~ 85 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAIS 85 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666555555555555555555444
No 126
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=29.67 E-value=95 Score=30.00 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=27.0
Q ss_pred CcccceEEEEECCCCCceeeeccCCCCCceeEEEEe
Q 000396 1098 SQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIK 1133 (1576)
Q Consensus 1098 ~~l~~l~~~v~~edG~v~~~i~~~~~~g~f~~~~ik 1133 (1576)
+...++.+.|.|+.|.++.++--..+.++-|..+|.
T Consensus 22 ~~a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~Wd 57 (81)
T PF13860_consen 22 EDADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTWD 57 (81)
T ss_dssp SSCEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE-
T ss_pred CcccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEEC
Confidence 445578999999999999888555566778887775
No 127
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=29.66 E-value=56 Score=41.58 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcchhccccCC-CceEEEEEEeec--CCeEEEEECCCCCChHh
Q 000396 160 FETALADLIDNSLQAVWTNA-KNERRLISVNIA--EDKISVFDTGPGMDSTD 208 (1576)
Q Consensus 160 l~sALAELVDNSIDA~~~Na-~A~rI~I~I~~~--~~~I~I~DNG~GMs~de 208 (1576)
|..-|-=||.||+-....+. +.-+|.|++.-. .-.|.|.|||.|+.+++
T Consensus 457 P~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDng~li~p~~ 508 (557)
T COG3275 457 PSFILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDNGGLIQPDE 508 (557)
T ss_pred chhhhhHHHHHHHHhcccchhcCCceEEEEEEeCCeEEEEEecCCCCcCCCC
Confidence 45567789999999876652 344677777653 34688999999999963
No 128
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.37 E-value=84 Score=33.25 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=38.4
Q ss_pred cHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000396 1229 VNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVE 1272 (1576)
Q Consensus 1229 ~~~~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~ 1272 (1576)
-.+|+..++.+-.++..+.+++..|.++++++.++|..|-...+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999988877666
No 129
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=28.95 E-value=1.1e+02 Score=34.78 Aligned_cols=71 Identities=21% Similarity=0.191 Sum_probs=43.9
Q ss_pred ccchhhhcHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhhccc
Q 000396 1222 MVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSA 1293 (1576)
Q Consensus 1222 ~~~~~~~~~~~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~~~~~~~~E~i~k~I~~~e~~a 1293 (1576)
++++-+...++.+.++.+..+|.+++.+...+..+..+++..|..||....... ..+|+..++|...+..+
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~-~~ke~~~~ei~~lks~~ 168 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLK-EKKEAKDKEISRLKSEA 168 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 445666677777888888888888877777777777777777777776533110 12334444554443333
No 130
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.69 E-value=51 Score=39.11 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=9.1
Q ss_pred CCCCceeeecccccc
Q 000396 1313 FMEDVVGPVALIGTV 1327 (1576)
Q Consensus 1313 ~~~gV~G~Va~L~~V 1327 (1576)
.+.|+++.|..+..|
T Consensus 128 SfsD~IsRvtAi~~i 142 (265)
T COG3883 128 SFSDLISRVTAISVI 142 (265)
T ss_pred cHHHHHHHHHHHHHH
Confidence 456666666655555
No 131
>smart00455 RBD Raf-like Ras-binding domain.
Probab=27.24 E-value=99 Score=29.60 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=36.3
Q ss_pred EEEEccCCceEEEEeeCCCCCccHHHHHhhhhhhhccccccc-ccc-ccceeecccC
Q 000396 41 FKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRH-DSM-KRKRKINWNG 95 (1576)
Q Consensus 41 f~~llpng~~~~l~~~~p~~~~~~~~f~~lv~~~~~~~~~~~-~~~-~~~~~~~~~~ 95 (1576)
|+|+||||+.+.+++. +++++.|.+.-+=+-++...-.+ ... ..++-++|+.
T Consensus 2 ~~v~LP~~~~~~V~vr---pg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~~ 55 (70)
T smart00455 2 CKVHLPDNQRTVVKVR---PGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQ 55 (70)
T ss_pred eEEECCCCCEEEEEEC---CCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecCC
Confidence 6899999999999986 45999999887655555533233 222 2456777865
No 132
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=27.11 E-value=1.8e+02 Score=31.17 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=39.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcHHHHHH
Q 000396 1231 ELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIR 1284 (1576)
Q Consensus 1231 ~~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~~~~~~~~E~i~k 1284 (1576)
+..+.++.+..=++.-+.+|+.++++++.+..++..|+..+-.-.|-|++++.+
T Consensus 43 ~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVee 96 (126)
T PF07028_consen 43 KLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEE 96 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 344444444444455566789999999999999999998888777877777666
No 133
>PRK04325 hypothetical protein; Provisional
Probab=27.01 E-value=2e+02 Score=28.04 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=35.8
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhh
Q 000396 1230 NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIY 1290 (1576)
Q Consensus 1230 ~~~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~~~~~~~~E~i~k~I~~~e 1290 (1576)
..+++.+..|-.++...|+-+..|+....+-...|..|+..+. .+.+++++.+
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~--------~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLR--------LLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhc
Confidence 3466777777777777777777777777777777777776665 5555555544
No 134
>PRK00736 hypothetical protein; Provisional
Probab=26.71 E-value=1.9e+02 Score=27.70 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=33.5
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhh
Q 000396 1232 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIY 1290 (1576)
Q Consensus 1232 ~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~~~~~~~~E~i~k~I~~~e 1290 (1576)
+++.+..|-.++...|+-+..|+....+-...|..|+..+. .+..++++.+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~--------~L~~rl~~~~ 53 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLD--------ALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhc
Confidence 34666667777777777777777777666666766666665 5555555543
No 135
>PRK11637 AmiB activator; Provisional
Probab=26.41 E-value=85 Score=39.22 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=6.3
Q ss_pred CCceeeccc
Q 000396 1506 NPTICFPIV 1514 (1576)
Q Consensus 1506 ~~~~~F~~~ 1514 (1576)
.+.++|.+-
T Consensus 406 ~~~l~fei~ 414 (428)
T PRK11637 406 RPSLYFEIR 414 (428)
T ss_pred CCeEEEEEE
Confidence 467888665
No 136
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=26.26 E-value=87 Score=30.86 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=24.7
Q ss_pred EEEEccCCceEEEEeeCCCCCccHHHHHhhh
Q 000396 41 FKILFPNGATIDLLLIDPKHKMAVTDFICLV 71 (1576)
Q Consensus 41 f~~llpng~~~~l~~~~p~~~~~~~~f~~lv 71 (1576)
++|+||||+.+.+.+.. +|+..|+..+.
T Consensus 2 ~~V~lPn~~~~~v~vrp---~~tv~dvLe~a 29 (77)
T cd01818 2 SWVCLPDNQPVLTYLRP---GMSVEDFLESA 29 (77)
T ss_pred CEEECCCCceEEEEECC---CCCHHHHHHHH
Confidence 68999999999998864 59999999984
No 137
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=26.12 E-value=1.3e+02 Score=35.63 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=47.3
Q ss_pred eEeEEeeCCCCceeEec-cCCcccccCCccccceEEEEecccCCCcCCCcceEEEEeeeeecc---------cCCcceec
Q 000396 970 SIPCRVTPGSLKNVAVH-PQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIED---------QLGLRRKV 1039 (1576)
Q Consensus 970 ~~~~rL~pGpP~~l~l~-P~~~e~li~g~~~~~~~vqvfD~~gN~~~~g~~V~i~l~gl~~~~---------~~~~~~k~ 1039 (1576)
-+--|+.+||++=+=|- |. +--.-++|.++|+|. |-|+++ ..|.+.-+++-+.| .-++..+|
T Consensus 147 d~~~~~vg~~~EIiPL~nP~------~a~~ge~f~~~vl~~-GkPv~n-A~V~v~~~n~~~~d~~a~~~~~ek~~~~~~T 218 (264)
T COG5266 147 DINTKPVGQPLEIIPLENPA------NAWVGEVFRGKVLDN-GKPVPN-ATVEVEFDNIDTKDNRAKTGNTEKTALVQFT 218 (264)
T ss_pred hhhhcccCCcceeEeccCcc------ccccCCeEEEEEEEC-CccCCC-cEEEEEEecccccccccccCCCCCcceEEEc
Confidence 44445555655433333 22 112558899999999 999999 88888876655555 23567889
Q ss_pred CCCcceecc
Q 000396 1040 DGYGCIDLS 1048 (1576)
Q Consensus 1040 ~~~G~~~l~ 1048 (1576)
|++|..++-
T Consensus 219 D~kG~~~fi 227 (264)
T COG5266 219 DDKGEVSFI 227 (264)
T ss_pred CCCceEEEE
Confidence 999987654
No 138
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=25.28 E-value=2.2e+03 Score=30.70 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=36.1
Q ss_pred ceEEEEECCCCCceeeeccCCCCCceeEEEEeecccccccccccccccceEeeCCcccCCCccceEEEEEee
Q 000396 1102 DITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHS 1173 (1576)
Q Consensus 1102 ~l~~~v~~edG~v~~~i~~~~~~g~f~~~~ik~~~~~~~~~~~~~~~~G~~~~~~~~vPe~~G~~~~~~~~s 1173 (1576)
.|+++++ +.+..|.+++-.+-||.-+-..|. .. .+|+|.+|. .|.-+|.|++-+-|.
T Consensus 872 ~l~lk~~-~~~~~d~ta~vt~PSG~~~~aei~-----------~~-~~~~y~vrF--tP~e~G~~tl~V~y~ 928 (1113)
T KOG0518|consen 872 SLDLKAT-EASSQDITARVTDPSGRVFEAEIV-----------DL-GQGTYQVRF--TPKEPGNHTLSVKYK 928 (1113)
T ss_pred eeeeecC-CCCccceEEEeeCCCCCccccEEE-----------EC-CCceEEEEe--cCCCCCceEEEEEec
Confidence 4566665 667777777776667776666664 32 346565554 577778777766554
No 139
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.89 E-value=2.2e+02 Score=27.57 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=38.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhhc
Q 000396 1231 ELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQ 1291 (1576)
Q Consensus 1231 ~~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~~~~~~~~E~i~k~I~~~e~ 1291 (1576)
.+++.|..|-.++...|+-+..|+....+-...|..|+..+. .+..++.+.+.
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~--------~L~~rl~~~~~ 57 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLR--------LLTEKLKASQP 57 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhcc
Confidence 366778777888888888888888887777777777777766 56666665543
No 140
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=24.84 E-value=1.8e+02 Score=27.77 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=27.3
Q ss_pred ccccccceEeeCCcccCCCccceEEEEEeecCcceeEEEE
Q 000396 1144 RYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIK 1183 (1576)
Q Consensus 1144 ~~~~~~G~~~~~~~~vPe~~G~~~~~~~~s~~~~L~l~~~ 1183 (1576)
...+.+|.|.+. +| .|.|.+.+.|.-|......+.
T Consensus 29 ~~Td~~G~F~i~---~~--~g~~~l~is~~Gy~~~~~~i~ 63 (88)
T PF13715_consen 29 TVTDENGRFSIK---LP--EGDYTLKISYIGYETKTITIS 63 (88)
T ss_pred EEECCCeEEEEE---Ec--CCCeEEEEEEeCEEEEEEEEE
Confidence 355678999987 66 688999999999887665555
No 141
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.48 E-value=1.4e+02 Score=30.28 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=16.2
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000396 1232 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKL 1267 (1576)
Q Consensus 1232 ~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l 1267 (1576)
+.+++..+..+|+.++++++.+..+..+++.+|..+
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433
No 142
>PRK04406 hypothetical protein; Provisional
Probab=24.46 E-value=2.2e+02 Score=27.86 Aligned_cols=52 Identities=17% Similarity=0.347 Sum_probs=35.5
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhh
Q 000396 1231 ELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIY 1290 (1576)
Q Consensus 1231 ~~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~~~~~~~~E~i~k~I~~~e 1290 (1576)
.+++.+..|-.+|...|+-+..|+....+-..+|..|+..|. .+.+++++.+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~--------~L~~rl~~~~ 59 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK--------YVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhc
Confidence 466777777777777777777777777777777777776665 5555555543
No 143
>PRK00846 hypothetical protein; Provisional
Probab=24.15 E-value=2.3e+02 Score=28.01 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=40.5
Q ss_pred cHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhh
Q 000396 1229 VNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIY 1290 (1576)
Q Consensus 1229 ~~~~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~~~~~~~~E~i~k~I~~~e 1290 (1576)
+..+++.+..|-.++...|+-+..|+....+....|..|+..+. .+..++++.+
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~--------~L~~rL~~~~ 61 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR--------HLLEDLGKVR 61 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhc
Confidence 56677888888888888888888888887777777777777666 5666666655
No 144
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=23.63 E-value=1.6e+02 Score=35.82 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=15.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000396 1235 EVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVE 1272 (1576)
Q Consensus 1235 ~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~ 1272 (1576)
+|..+..++.+++..+..+++++.++++++..++..++
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444433
No 145
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=23.48 E-value=1.8e+02 Score=32.12 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=18.9
Q ss_pred ccccceEeeCCcccCCCccceEEEEEeec
Q 000396 1146 AFRQGRCTVPAISLPQNEGCFCFVATHSQ 1174 (1576)
Q Consensus 1146 ~~~~G~~~~~~~~vPe~~G~~~~~~~~s~ 1174 (1576)
.|.+|.+.|+ |...|.|-+++-|..
T Consensus 189 TD~~G~~~~~----~~~~G~wli~a~~~~ 213 (215)
T PF10670_consen 189 TDANGRATFT----LPRPGLWLIRASHKD 213 (215)
T ss_pred ECCCCEEEEe----cCCCEEEEEEEEEec
Confidence 3567888864 467899999998875
No 146
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.44 E-value=1.7e+02 Score=35.56 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000396 1230 NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVE 1272 (1576)
Q Consensus 1230 ~~~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~ 1272 (1576)
..+++++..+..+.+++.++|+.|.++..++++++.+++....
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777777777777777777777666
No 147
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=22.77 E-value=1.8e+02 Score=27.83 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=24.9
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000396 1232 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVE 1272 (1576)
Q Consensus 1232 ~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~ 1272 (1576)
+++.+..|-.++...|+-+..|+....+-...|..|+..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665555555555555554
No 148
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.59 E-value=2.7e+02 Score=27.35 Aligned_cols=56 Identities=27% Similarity=0.383 Sum_probs=46.9
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhhccc
Q 000396 1230 NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSA 1293 (1576)
Q Consensus 1230 ~~~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~~~~~~~~E~i~k~I~~~e~~a 1293 (1576)
-.++..|.+|-++++.-|+-|..|+..+.+-...+..+|..|. .+.+..++.+.++
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr--------~L~~kl~~~~~~~ 59 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLR--------LLTEKLKDLQPSA 59 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhcccc
Confidence 3567888888899998999999999999999999999999988 7777777776664
No 149
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=22.55 E-value=2.9e+02 Score=39.16 Aligned_cols=99 Identities=16% Similarity=0.326 Sum_probs=64.3
Q ss_pred cCCccccceEEEEecccCCCcCCCcceEEEEeeeeecccCCcceecCCCcceeccce-------eEEE--eecCcc---e
Q 000396 994 LPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGL-------LKVK--AGYGKN---V 1061 (1576)
Q Consensus 994 i~g~~~~~~~vqvfD~~gN~~~~g~~V~i~l~gl~~~~~~~~~~k~~~~G~~~l~g~-------l~v~--a~y~k~---~ 1061 (1576)
..|..+..-.++|.|+.||-.++ +..+|++|.+....| +..+ +||==+ +
T Consensus 1073 at~~~LaGA~FeLQdk~G~~l~e-------------------nL~TD~~G~v~itdLaPGDYqfVEtkAPtGY~LdatPV 1133 (1531)
T COG4932 1073 ATGATLAGAEFELQDKDGNTLQE-------------------NLTTDEDGKVEITDLAPGDYQFVETKAPTGYILDATPV 1133 (1531)
T ss_pred cccccccCceEEEeeccCcchhh-------------------hccccccCcEEeccccCCceeeEEecCCceeEecCccc
Confidence 34446677777888888877777 678999999998883 4444 455433 4
Q ss_pred EEEEecC-Ccee-eeecccccccceeeccCCCcccccCCcccceEEEEECCCCCc
Q 000396 1062 SLSVLSD-NGVI-FKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAV 1114 (1576)
Q Consensus 1062 si~Vl~d-~~pi-~~~~~~~~~~~l~~~~~~~~~~~aG~~l~~l~~~v~~edG~v 1114 (1576)
-++|-.+ ++++ ..++=...-|..++++. |+ .++..|+|-.|+++|+||.+
T Consensus 1134 ~FtI~eeq~e~~~vtKeN~~~~GsvqLtK~--Ds-~t~a~LaGA~Fel~d~dG~~ 1185 (1531)
T COG4932 1134 NFTISEEQDEAAKVTKENTLKPGSVQLTKV--DS-ATKATLAGAEFELQDEDGTL 1185 (1531)
T ss_pred eeEeeccCCceeEEeecccccccceEEEEe--cc-cccccccCcEEEEEcCCCcE
Confidence 4444444 4443 12222222344444443 33 39999999999999999999
No 150
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.42 E-value=1.6e+02 Score=33.16 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhcccccccCcHHHHHH
Q 000396 1257 KMEVEEVLSKLQVSVEPYSLLTKEEIIR 1284 (1576)
Q Consensus 1257 ~~~l~~~i~~l~~~l~~~~~~~~E~i~k 1284 (1576)
+.+++.++..|+..|..|.-.+|+.+.+
T Consensus 112 l~~l~~~~~~l~~el~~~~~~Dp~~i~~ 139 (188)
T PF03962_consen 112 LEELKKELKELKKELEKYSENDPEKIEK 139 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4555555666666666554445544444
No 151
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=21.97 E-value=1.5e+02 Score=33.74 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=25.7
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhh
Q 000396 1232 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIY 1290 (1576)
Q Consensus 1232 ~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~~~~~~~~E~i~k~I~~~e 1290 (1576)
+++.+..|-.+|-+++.+...++.++...+.+|..+++..+ ++..++.+.+
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~--------~l~~~~~~~e 179 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAE--------ALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 34444444444444444444444445555555665555554 5555555443
No 152
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.85 E-value=7.2e+02 Score=28.71 Aligned_cols=63 Identities=24% Similarity=0.481 Sum_probs=42.1
Q ss_pred cccceEEEEECCCCCceeeeccCCCC-CceeEEEEeecccccccccccccccceEeeCCcccCCCccceEEEEEeec-Cc
Q 000396 1099 QLEDITFEIVDSKGAVDVTIHDDDKS-GQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQ-YT 1176 (1576)
Q Consensus 1099 ~l~~l~~~v~~edG~v~~~i~~~~~~-g~f~~~~ik~~~~~~~~~~~~~~~~G~~~~~~~~vPe~~G~~~~~~~~s~-~~ 1176 (1576)
.+.++.|+|...||.. ||+..+. ++.++.+-. ++|.|+ |||---.|. .|
T Consensus 53 g~~~vd~~I~gP~~~~---i~~~~~~ssgk~tF~a~--------------~~G~Y~------------fCF~N~~s~mtp 103 (201)
T KOG1692|consen 53 GFLGVDVEITGPDGKI---IHKGKRESSGKYTFTAP--------------KKGTYT------------FCFSNKMSTMTP 103 (201)
T ss_pred CccceeEEEECCCCch---hhhcccccCceEEEEec--------------CCceEE------------EEecCCCCCCCc
Confidence 7788999999999998 7765544 567777665 568888 887544441 22
Q ss_pred ceeEEEEEEEEecCC
Q 000396 1177 ELNISIKVPIVRAPK 1191 (1576)
Q Consensus 1177 ~L~l~~~v~v~~~~~ 1191 (1576)
+ -+...|.+..+..
T Consensus 104 k-~V~F~ihvg~~~~ 117 (201)
T KOG1692|consen 104 K-TVMFTIHVGHAPQ 117 (201)
T ss_pred e-EEEEEEEEeeccc
Confidence 2 2345566666665
No 153
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.59 E-value=1.9e+02 Score=33.34 Aligned_cols=6 Identities=0% Similarity=0.074 Sum_probs=3.0
Q ss_pred ceEeeC
Q 000396 1150 GRCTVP 1155 (1576)
Q Consensus 1150 G~~~~~ 1155 (1576)
|+++|+
T Consensus 66 ~w~~Vr 71 (206)
T PRK10884 66 NYAQIR 71 (206)
T ss_pred CEEEEE
Confidence 455544
No 154
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=21.45 E-value=1.5e+02 Score=27.77 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=22.3
Q ss_pred cccccceEeeCCcccCCCccceEEEEEeecCcceeE
Q 000396 1145 YAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNI 1180 (1576)
Q Consensus 1145 ~~~~~G~~~~~~~~vPe~~G~~~~~~~~s~~~~L~l 1180 (1576)
..+.+|.|.|+.+ |. |.|.+.+.|.-|.....
T Consensus 33 ~Td~~G~f~~~~l--~~--g~Y~l~v~~~g~~~~~~ 64 (82)
T PF13620_consen 33 TTDSDGRFSFEGL--PP--GTYTLRVSAPGYQPQTQ 64 (82)
T ss_dssp E--TTSEEEEEEE---S--EEEEEEEEBTTEE-EEE
T ss_pred EECCCceEEEEcc--CC--EeEEEEEEECCcceEEE
Confidence 3466799998755 33 99999998888876654
No 155
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.93 E-value=1.4e+02 Score=34.67 Aligned_cols=9 Identities=22% Similarity=0.471 Sum_probs=3.6
Q ss_pred HHHHHHHhh
Q 000396 1281 EIIRRIKSI 1289 (1576)
Q Consensus 1281 ~i~k~I~~~ 1289 (1576)
++.++|++.
T Consensus 88 ~L~~qi~~~ 96 (251)
T PF11932_consen 88 SLEQQIEQI 96 (251)
T ss_pred HHHHHHHHH
Confidence 334444333
No 156
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.88 E-value=2.1e+02 Score=30.64 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=14.6
Q ss_pred chhhh-cHHHHHHHHhhhhhhhhHHHHH
Q 000396 1224 PIMKI-VNELESEVRNYGLCIGRHEKAL 1250 (1576)
Q Consensus 1224 ~~~~~-~~~~q~~l~~lg~~i~~~e~~l 1250 (1576)
++||- -.-|.+-...++..+.+..+.|
T Consensus 32 D~M~vTrr~m~~A~~~v~kql~~vs~~l 59 (126)
T PF07889_consen 32 DLMFVTRRSMSDAVASVSKQLEQVSESL 59 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45665 3445666666666665544433
No 157
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=20.82 E-value=2.4e+02 Score=27.47 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=27.4
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhhhcc
Q 000396 1237 RNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQS 1292 (1576)
Q Consensus 1237 ~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~~~~~~~~E~i~k~I~~~e~~ 1292 (1576)
+.|..+.-.|..-|+.|+.+..+++.++..++..++ ....++.+++..
T Consensus 22 ekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~--------~~e~~~~~l~~~ 69 (74)
T PF12329_consen 22 EKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLE--------ELEKELESLEER 69 (74)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 444444445666666666666666666666666655 444555444443
No 158
>smart00338 BRLZ basic region leucin zipper.
Probab=20.76 E-value=2.2e+02 Score=26.37 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=30.6
Q ss_pred hcHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000396 1228 IVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSV 1271 (1576)
Q Consensus 1228 ~~~~~q~~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l 1271 (1576)
+-.++++.+..|-.++.+++.+...|.++.+.+..++..|...+
T Consensus 20 ~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 20 SRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777777777777777777777777777777766544
No 159
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.64 E-value=2.3e+02 Score=26.59 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=26.9
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHhh
Q 000396 1235 EVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSI 1289 (1576)
Q Consensus 1235 ~l~~lg~~i~~~e~~l~~L~~e~~~l~~~i~~l~~~l~~~~~~~~E~i~k~I~~~ 1289 (1576)
.+..+..+|++++.+++.++.+.++++.++..|+. +++.+.+..++.
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~--------~~~~ie~~AR~~ 64 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKN--------DPDYIEKVAREK 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHH
Confidence 34444555666666666666666666666665532 455666666543
No 160
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.48 E-value=2e+02 Score=26.84 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 000396 1245 RHEKALKLLNDQKMEVEEVLSKL 1267 (1576)
Q Consensus 1245 ~~e~~l~~L~~e~~~l~~~i~~l 1267 (1576)
.++..+..+++|..++.+++.++
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444433333333333
Done!