Query 000396
Match_columns 1576
No_of_seqs 281 out of 1003
Neff 4.7
Searched_HMMs 13730
Date Tue Mar 26 17:50:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000396.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_173-177//hhsearch_scop/000396hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gxja_ d.215.1.1 (A:) Smc hin 99.9 2E-21 1.5E-25 162.5 11.4 154 1293-1505 3-161 (161)
2 d1b63a2 d.122.1.2 (A:-2-216) D 99.6 1.9E-15 1.4E-19 121.2 9.9 143 142-322 6-152 (218)
3 d2iwxa1 d.122.1.1 (A:2-214) HS 99.6 3.3E-15 2.4E-19 119.5 9.7 179 141-345 4-201 (213)
4 d1h7sa2 d.122.1.2 (A:29-231) D 99.6 9.8E-15 7.1E-19 116.2 10.8 129 157-322 4-134 (203)
5 d2gqpa1 d.122.1.1 (A:74-337) H 99.5 8.9E-14 6.5E-18 109.6 10.0 180 143-345 4-203 (227)
6 d1uyla_ d.122.1.1 (A:) HSP90 { 99.5 1.4E-13 1E-17 108.2 10.9 177 142-345 4-199 (208)
7 d2hkja3 d.122.1.2 (A:10-228) T 99.2 1.7E-10 1.2E-14 86.9 11.9 107 159-279 22-137 (219)
8 d1pvga2 d.122.1.2 (A:7-245) DN 98.3 1.2E-05 8.6E-10 53.3 12.6 113 159-277 53-167 (239)
9 d1kija2 d.122.1.2 (A:9-220) DN 97.8 8.9E-05 6.5E-09 47.3 9.9 106 157-278 24-137 (212)
10 d1ei1a2 d.122.1.2 (A:2-220) DN 97.7 0.00011 8.3E-09 46.5 9.1 109 149-271 23-140 (219)
11 d1gkza2 d.122.1.4 (A:186-378) 97.7 0.00023 1.7E-08 44.4 9.7 116 159-279 53-187 (193)
12 d1bxda_ d.122.1.3 (A:) Histidi 97.6 0.00037 2.7E-08 43.0 10.1 97 159-278 47-148 (161)
13 d2c2aa2 d.122.1.3 (A:321-481) 97.6 0.00041 3E-08 42.7 10.1 105 158-278 48-157 (161)
14 d1id0a_ d.122.1.3 (A:) Histidi 97.6 0.00058 4.2E-08 41.6 10.9 96 158-278 43-143 (146)
15 d1jm6a2 d.122.1.4 (A:1177-1366 97.4 0.00035 2.5E-08 43.2 8.1 110 159-279 60-178 (190)
16 d1ysra1 d.122.1.3 (A:299-446) 97.4 0.00095 6.9E-08 40.1 9.9 97 158-277 43-144 (148)
17 d1th8a_ d.122.1.3 (A:) Anti-si 97.1 0.0023 1.7E-07 37.5 9.5 88 159-268 39-128 (139)
18 d1s14a_ d.122.1.2 (A:) Topoiso 96.9 0.00049 3.6E-08 42.1 4.5 133 159-338 5-141 (168)
19 d1y8oa2 d.122.1.4 (A:177-301) 96.5 0.0036 2.6E-07 36.1 6.2 53 159-211 64-123 (125)
20 d1ixma_ d.123.1.1 (A:) Sporula 96.1 0.0035 2.5E-07 36.2 4.4 53 158-211 96-152 (179)
21 d1r62a_ d.122.1.3 (A:) Nitroge 95.4 0.017 1.2E-06 31.5 5.8 98 158-278 43-153 (156)
22 d1cwva1 b.1.14.1 (A:503-596) I 36.4 7.2 0.00053 13.2 7.5 65 991-1059 11-82 (94)
No 1
>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.86 E-value=2e-21 Score=162.54 Aligned_cols=154 Identities=25% Similarity=0.317 Sum_probs=123.3
Q ss_pred CCHHHEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCC
Q ss_conf 20000000336556899888788701410201121674588999998332453469980488899999864118852001
Q 000396 1293 AASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKC 1372 (1576)
Q Consensus 1293 aa~i~~~l~~~~~~~~~~s~~~~gV~G~Va~L~~V~d~~la~~ls~~lg~~~m~~VV~~t~~~ak~l~~Ylke~~i~~~~ 1372 (1576)
..++.++++.+. ..+||+|.|++|+.| ++.|..|++++||. .+++||++|.+.|+.+..|+++.+
T Consensus 3 ~~gvr~il~~~~--------~~~gv~G~v~dli~v-~~~y~~Ave~aLG~-~l~~vVV~~~~~A~~~i~~lk~~~----- 67 (161)
T d1gxja_ 3 SRAVRAVFEEKE--------RFPGLVDVVSNLIEV-DEKYSLAVSVLLGG-TAQNIVVRNVDTAKAIVEFLKQNE----- 67 (161)
T ss_dssp CHHHHHHHHTGG--------GCTTEEEEHHHHCBC-CGGGHHHHHHHHGG-GGGCEEESSHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHCCC--------CCCCCEEEHHHHCCC-CHHHHHHHHHHHHH-HHCEEEECCHHHHHHHHHHHHHCC-----
T ss_conf 389999996612--------279955878882760-88799999999636-540599787999999999974325-----
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 01355620275548803787427978889999999920113599999999999998517774311136434211123588
Q 000396 1373 ALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGN 1452 (1576)
Q Consensus 1373 ~~~~~~~s~~~~~~GR~tfLpLd~Irp~~~~~~~~dpq~~l~lp~p~l~~g~~~~GfigyAvNlI~~d~~~~~~~t~~g~ 1452 (1576)
.||++|+|||.+.+.... .+.+ ...+|++++|.|+|+|++++.
T Consensus 68 -------------~Gr~tfipl~~i~~~~~~-------------~~~~---~~~~~~v~~~~dlV~~~~~~~-------- 110 (161)
T d1gxja_ 68 -------------AGRVTILPLDLIDGSFNR-------------ISGL---ENERGFVGYAVDLVKFPSDLE-------- 110 (161)
T ss_dssp -------------CCCEEEEETTTCCCCCCC-------------CTTG---GGSTTEEEEHHHHCBCCGGGH--------
T ss_pred -------------CCEEEEEECCCCCCCCCC-------------CCCC---CCCCCCCHHHHHHCCCCHHHH--------
T ss_conf -------------861899965543465321-------------1100---037773332887433888899--------
Q ss_pred CCCHHHHHHHHCCCEEECCHHHHHHHHHH-----CCCCEEEECCCEEECCCEEEECCC
Q ss_conf 72023899660252200118869999841-----148459702881211650871469
Q 000396 1453 GLRETLLYRLFGKLQVYKTRKDMIEAHTC-----IRHGAVSLDGGILKEDGIISLGCG 1505 (1576)
Q Consensus 1453 gLRetif~~lFg~t~Vy~T~~~m~~A~~~-----i~~~~VTLDG~li~~sG~~tgG~~ 1505 (1576)
.++.++|+++.|+++.++ |+.+ ++-.+||+|||+++++|.|+||..
T Consensus 111 ----~~~~~llg~~~iv~~l~~---A~~l~~~~~~~~~~VT~dGd~~~~~G~i~GG~~ 161 (161)
T d1gxja_ 111 ----VLGGFLFGNSVVVETLDD---AIRMKKKYRLNTRIATLDGELISGRGAITGGRE 161 (161)
T ss_dssp ----HHHHHHHTTCEEESCHHH---HHHHHHHHTCCSCEEETTSCEECTTSCEEEEEC
T ss_pred ----HHHHHHCCCEEEECCHHH---HHHHHHHCCCCCEEEECCCCEECCCEEEECCCC
T ss_conf ----999998599899999999---999998649997599699838989866837999
No 2
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
Probab=99.61 E-value=1.9e-15 Score=121.23 Aligned_cols=143 Identities=18% Similarity=0.201 Sum_probs=99.3
Q ss_pred CCCCCCHHHHHHCCC-CCCHHHHHHHHHHCCHHCCCCCCCCEEEEEEEEEC-CCEEEEEECCCCCCHHHHHHHHH-CCCC
Q ss_conf 025889778850789-89989999999311021001389960799999616-98599997999999676967531-1334
Q 000396 142 WDLTPDTDLLRELPE-DYTFETALADLIDNSLQAVWTNAKNERRLISVNIA-EDKISVFDTGPGMDSTDENSIVK-WGKM 218 (1576)
Q Consensus 142 ~dL~Ps~~lL~~l~~-~Ysl~sAIAELVDNSIDA~~~N~~A~rI~I~I~~d-~~~I~I~DNG~GMs~deL~~~~~-wg~~ 218 (1576)
..|++++...+..++ ..++.+||.|||+||||| +|++|.|.+... ...|.|.|||+||+++|+..+.. +++.
T Consensus 6 ~~L~~~~~~~i~ag~vi~~~~~~vkELveNsiDA-----~At~I~V~i~~~g~~~i~V~DnG~Gi~~~d~~~~~~r~~TS 80 (218)
T d1b63a2 6 QVLPPQLANQIAAGEVVERPASVVKELVENSLDA-----GATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 80 (218)
T ss_dssp CCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHT-----TCSEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCS
T ss_pred EECCHHHHHHHCCCCEEECHHHHHHHHHHHHHCC-----CCCEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 5899999998578687735889999998643527-----99889999985981089995077775888887667545155
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHCCCCEEEEEEEECCCCEEEEEEEEHHHHHHCCCCCCCEEECCC
Q ss_conf 54200000011468999998997653346-21344530347799999507981599999732677511345675021588
Q 000396 219 GASLHRASKAQGIGGKPPYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGG 297 (1576)
Q Consensus 219 g~S~kR~~~a~~~Ggk~p~~~~~LGrFGv-GlK~AsfsLG~~itV~TK~~gs~~v~~l~Ld~e~L~~~s~~~~ew~l~~~ 297 (1576)
-.. ... ....+..||+ |..++++....++++.|++.++...+.+..+...... ...
T Consensus 81 Ki~--~~~-----------dl~~~~t~GFRGEAL~Si~~vs~l~I~s~~~~~~~~~~~~~~~~~~~~--------~~~-- 137 (218)
T d1b63a2 81 KIA--SLD-----------DLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNV--------TVK-- 137 (218)
T ss_dssp SCC--SHH-----------HHHTCCSSCCSSCHHHHHHTTSEEEEEEECTTCSSEEEEEEETTTTEE--------EEE--
T ss_pred CCC--CHH-----------HCCHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEECCCCC--------EEE--
T ss_conf 663--200-----------001013216662398876630836776403798854999997112210--------035--
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 7799955466899998059999589
Q 000396 298 IRFPSKDEIADSPHGSFTKVEIWEP 322 (1576)
Q Consensus 298 ir~ps~eEi~~s~sGTFT~VVI~el 322 (1576)
+. ..+.|| .|++.++
T Consensus 138 -------~~-~~~~GT--tV~V~~L 152 (218)
T d1b63a2 138 -------PA-AHPVGT--TLEVLDL 152 (218)
T ss_dssp -------EE-CCCSEE--EEEEEST
T ss_pred -------EC-CCCCCC--EEEEEEE
T ss_conf -------62-568853--8999762
No 3
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.59 E-value=3.3e-15 Score=119.52 Aligned_cols=179 Identities=16% Similarity=0.178 Sum_probs=112.3
Q ss_pred CCCCCCCHH-HHHHCCC-CC-CHHHHHHHHHHCCHHCCCCC-----------C--CCEEEEEEEEECCCEEEEEECCCCC
Q ss_conf 102588977-8850789-89-98999999931102100138-----------9--9607999996169859999799999
Q 000396 141 MWDLTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWTN-----------A--KNERRLISVNIAEDKISVFDTGPGM 204 (1576)
Q Consensus 141 ~~dL~Ps~~-lL~~l~~-~Y-sl~sAIAELVDNSIDA~~~N-----------~--~A~rI~I~I~~d~~~I~I~DNG~GM 204 (1576)
.+.+..++. +|..+.. -| ++..+|+|||.||+||.... . ....|.|.++-+...|+|.|||.||
T Consensus 4 ~~~Fqae~~~ll~ll~~~lYs~~~iflRELiqNa~DA~~~~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGM 83 (213)
T d2iwxa1 4 TFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGM 83 (213)
T ss_dssp EEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHTTTCGGGGTTSCCCCEEEEEEGGGTEEEEEECSSCC
T ss_pred CEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 17556639999999988514784077899987099999998876425930025775422122345566525884278303
Q ss_pred CHHHHHHHHHCCCCCCCHHCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCEEEEEEEEHHHHH
Q ss_conf 96769675311334542000000-11468999998997653346213445303477999995079815999997326775
Q 000396 205 DSTDENSIVKWGKMGASLHRASK-AQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALM 283 (1576)
Q Consensus 205 s~deL~~~~~wg~~g~S~kR~~~-a~~~Ggk~p~~~~~LGrFGvGlK~AsfsLG~~itV~TK~~gs~~v~~l~Ld~e~L~ 283 (1576)
+.+++.+ .|++.+.|..+... ...... ....+|+||+|+ .++|.++++++|+||..+.... .|..+.
T Consensus 84 t~~~~~~--~l~~ia~S~~~~~~~~~~~~~----~~~~IGqFGIGf-yS~Fmvad~v~V~trs~~~~~~-~~~~~~---- 151 (213)
T d2iwxa1 84 TKAELIN--NLGTIAKSGTKAFMEALSAGA----DVSMIGQFGVGF-YSLFLVADRVQVISKSNDDEQY-IWESNA---- 151 (213)
T ss_dssp CHHHHHH--HHTTCCCSTHHHHHHHHHHTC----CGGGGGGGTCGG-GGGGGTEEEEEEEEECTTSCCE-EEEECS----
T ss_pred CHHHHHH--HHHHHHCCCCHHHHHHHHHHH----HHHHHCCCCCCH-HHHHHHCCCEEEEEECCCCCCC-EEEEEC----
T ss_conf 5889988--876440001067775410000----133411146011-0010223613698605886662-456751----
Q ss_pred HCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCC--CCCCHHHHHHHHHHHCCCCCC
Q ss_conf 11345675021588779995546689999805999958977--775725799999723088631
Q 000396 284 RCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPKL--KSLDVKPLGCKLKDIYFPYIQ 345 (1576)
Q Consensus 284 ~~s~~~~ew~l~~~ir~ps~eEi~~s~sGTFT~VVI~el~~--~~~~i~~Lkr~La~IYh~yL~ 345 (1576)
+..+....... .....+|| .|++.-..- .+....+|+ .|..-|..||.
T Consensus 152 -----~~~~~~~~~~~------~~~~~~GT--~I~L~lk~d~~efle~~rlk-~iIkkYS~fI~ 201 (213)
T d2iwxa1 152 -----GGSFTVTLDEV------NERIGRGT--ILRLFLKDDQLEYLEEKRIK-EVIKRHSEFVA 201 (213)
T ss_dssp -----SSEEEEEECSS------SCCCSSEE--EEEEEECTTCGGGGCHHHHH-HHHHHHCCCCS
T ss_pred -----CCCCEEEEEEC------CCCCCCCE--EEEEEECCCHHHHCCHHHHH-HHHHHHHCCCC
T ss_conf -----89947999712------57778867--99998575488865999999-99999960767
No 4
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.57 E-value=9.8e-15 Score=116.24 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHCCHHCCCCCCCCEEEEEEEEE-CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCCCC
Q ss_conf 8998999999931102100138996079999961-698599997999999676967531133454200000011468999
Q 000396 157 DYTFETALADLIDNSLQAVWTNAKNERRLISVNI-AEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1576)
Q Consensus 157 ~Ysl~sAIAELVDNSIDA~~~N~~A~rI~I~I~~-d~~~I~I~DNG~GMs~deL~~~~~wg~~g~S~kR~~~a~~~Ggk~ 235 (1576)
..++.+||.||||||+|| +|++|.|.+.- ....|.|.|||+||+.+++..+. .....|..+ .
T Consensus 4 i~~~~~~v~ELi~NsiDA-----~At~I~i~i~~~g~~~i~V~DnG~Gi~~~dl~~~~--~~~~tsk~~----------~ 66 (203)
T d1h7sa2 4 VLSLSTAVKELVENSLDA-----GATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLT--LKHHTSKIQ----------E 66 (203)
T ss_dssp ECCHHHHHHHHHHHHHHT-----TCSEEEEEEEGGGTSEEEEEECSCCCCGGGSGGGG--C-------------------
T ss_pred EECHHHHHHHHHHHHHCC-----CCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHH--HHEEECCCC----------C
T ss_conf 835799999999778748-----99889999986988899995287113878853233--313202234----------5
Q ss_pred CCCCCCCCCCCC-CHHHHHHCCCCEEEEEEEECCCCEEEEEEEEHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 998997653346-2134453034779999950798159999973267751134567502158877999554668999980
Q 000396 236 PYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIADSPHGSF 314 (1576)
Q Consensus 236 p~~~~~LGrFGv-GlK~AsfsLG~~itV~TK~~gs~~v~~l~Ld~e~L~~~s~~~~ew~l~~~ir~ps~eEi~~s~sGTF 314 (1576)
......++.||+ |..+++++..+++++.|++.+....+.+.++... ...+.. +. ..++||
T Consensus 67 ~~~~~~~~t~GfrGeaL~si~~~s~~~i~s~~~~~~~~~~i~~~~~g--------~~~~~~---------~~-~~~~GT- 127 (203)
T d1h7sa2 67 FADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNG--------KIIQKT---------PY-PRPRGT- 127 (203)
T ss_dssp -CCTTCSEEESSSSSHHHHHHHHSEEEEEEECTTCSSCEEEEECTTS--------CEEEEE---------EC-CCCSEE-
T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCHHEEEEEECCC--------CEEEEE---------EC-CCCCCE-
T ss_conf 44433321027660556665405614787333898500799874067--------502343---------11-334642-
Q ss_pred EEEEEECC
Q ss_conf 59999589
Q 000396 315 TKVEIWEP 322 (1576)
Q Consensus 315 T~VVI~el 322 (1576)
+|++.++
T Consensus 128 -tV~v~~L 134 (203)
T d1h7sa2 128 -TVSVQQL 134 (203)
T ss_dssp -EEEEEST
T ss_pred -EEEEEHH
T ss_conf -7885033
No 5
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]}
Probab=99.49 E-value=8.9e-14 Score=109.62 Aligned_cols=180 Identities=16% Similarity=0.197 Sum_probs=106.8
Q ss_pred CCCCCHH-HHHHCCC-CC-CHHHHHHHHHHCCHHCCCC-------C----C--CCEEEEEEEEECCCEEEEEECCCCCCH
Q ss_conf 2588977-8850789-89-9899999993110210013-------8----9--960799999616985999979999996
Q 000396 143 DLTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWT-------N----A--KNERRLISVNIAEDKISVFDTGPGMDS 206 (1576)
Q Consensus 143 dL~Ps~~-lL~~l~~-~Y-sl~sAIAELVDNSIDA~~~-------N----~--~A~rI~I~I~~d~~~I~I~DNG~GMs~ 206 (1576)
.+.-+++ +|..+.. -| ++..+|+|||.||.||... . . ....|.|.++-+...+.|.|||.||++
T Consensus 4 ~Fq~e~~~ll~ll~~sLYs~~~iflRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~i~i~~d~~~~~l~i~DnGiGMt~ 83 (227)
T d2gqpa1 4 AFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTR 83 (227)
T ss_dssp CCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCH
T ss_pred EEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCH
T ss_conf 44213878999987603689842088888669999999999865495101245213321025777768999845755538
Q ss_pred HHHHHHHHCCCCCCCHHCCCC-CCCCCC-CCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCEEEEEEEEHHHHHH
Q ss_conf 769675311334542000000-114689-999989976533462134453034779999950798159999973267751
Q 000396 207 TDENSIVKWGKMGASLHRASK-AQGIGG-KPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMR 284 (1576)
Q Consensus 207 deL~~~~~wg~~g~S~kR~~~-a~~~Gg-k~p~~~~~LGrFGvGlK~AsfsLG~~itV~TK~~gs~~v~~l~Ld~e~L~~ 284 (1576)
+++.+ .+|+.+.|..+... ...... .......-+|+||+|+ .++|..+++++|.|+..++. .+.|.-+
T Consensus 84 ~e~~~--~lgtIa~Sgt~~f~~~~~~~~~~~~~~~~~IGqFGvGf-yS~FmVad~V~v~s~~~~~~-~~~W~s~------ 153 (227)
T d2gqpa1 84 EELVK--NLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGF-YSAFLVADKVIVTSKHNNDT-QHIWESD------ 153 (227)
T ss_dssp HHHHH--HHHCC---------------------CHHHHHHTTCGG-GGGGGTEEEEEEEEECTTSC-CEEEEES------
T ss_pred HHHHH--HHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCE-EEEEEEEEEEEEEEECCCCC-CCEEEEC------
T ss_conf 99999--88877612618888752201244343022333227541-68886420589997316776-6579806------
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCC--CCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 134567502158877999554668999980599995897--7775725799999723088631
Q 000396 285 CSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPK--LKSLDVKPLGCKLKDIYFPYIQ 345 (1576)
Q Consensus 285 ~s~~~~ew~l~~~ir~ps~eEi~~s~sGTFT~VVI~el~--~~~~~i~~Lkr~La~IYh~yL~ 345 (1576)
+...+.+... +....++|| +|++.-.. ..+....+|+ .|..-|..||.
T Consensus 154 ---g~~~~~i~~~-------~~~~~~rGT--~I~L~Lk~d~~efl~~~rl~-~iIkkYs~fI~ 203 (227)
T d2gqpa1 154 ---SNEFSVIADP-------RGNTLGRGT--TITLVLKEEASDYLELDTIK-NLVKKYSQFIN 203 (227)
T ss_dssp ---SSCEEEEECT-------TCSCSSSEE--EEEEEECGGGGGGGCHHHHH-HHHHHHHTTCS
T ss_pred ---CCCCEECCCC-------CCCCCCCCE--EEEEEECCCCHHHCCHHHHH-HHHHHHHCCCC
T ss_conf ---9973222443-------344456553--79999666315445999999-99999862778
No 6
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.49 E-value=1.4e-13 Score=108.19 Aligned_cols=177 Identities=19% Similarity=0.215 Sum_probs=107.5
Q ss_pred CCCCCCHH-HHHHCCC-CC-CHHHHHHHHHHCCHHCCCCC-------------CCCEEEEEEEEECCCEEEEEECCCCCC
Q ss_conf 02588977-8850789-89-98999999931102100138-------------996079999961698599997999999
Q 000396 142 WDLTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWTN-------------AKNERRLISVNIAEDKISVFDTGPGMD 205 (1576)
Q Consensus 142 ~dL~Ps~~-lL~~l~~-~Y-sl~sAIAELVDNSIDA~~~N-------------~~A~rI~I~I~~d~~~I~I~DNG~GMs 205 (1576)
+.+.-++. +|..+.. -| ++...|+|||.||.||..+. .....|.|.++-+...+.|.|||.||+
T Consensus 4 ~~Fq~e~~~ll~ll~~slYs~~~iflRELIqNa~DA~~k~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~l~I~DnGiGMt 83 (208)
T d1uyla_ 4 FAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMT 83 (208)
T ss_dssp EECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCC
T ss_pred EEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEEECCCCCEEEEECCCCCCC
T ss_conf 65168798999999986057842768989852999999888886279202147864222775237764899972895454
Q ss_pred HHHHHHHHHCCCCCCCHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCEEEEEEEEHHHHHH
Q ss_conf 676967531133454200000-0114689999989976533462134453034779999950798159999973267751
Q 000396 206 STDENSIVKWGKMGASLHRAS-KAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMR 284 (1576)
Q Consensus 206 ~deL~~~~~wg~~g~S~kR~~-~a~~~Ggk~p~~~~~LGrFGvGlK~AsfsLG~~itV~TK~~gs~~v~~l~Ld~e~L~~ 284 (1576)
.+++.+ ..|+.+.|..+.. +... + .. ....+|+||+|+ .++|..++++.|.||..++.. ..|..+.
T Consensus 84 ~~el~~--~LgtIa~Sg~~~f~~~~~-~-~~--~~~~IGqFGVGF-yS~FmVad~v~V~sk~~~~~~-~~~~~~~----- 150 (208)
T d1uyla_ 84 KADLIN--NLGTIAKSGTKAFMEALQ-A-GA--DISMIGQFGVGF-YSAYLVAEKVTVITKHNDDEQ-YAWESSA----- 150 (208)
T ss_dssp HHHHHT--GGGSCHHHHHHHHHHHHH-T-TC--CGGGGGGGTCGG-GGGGGTEEEEEEEEECTTSCC-EEEEECS-----
T ss_pred HHHHHH--HCCCCCCCCHHHHHHHHH-H-CC--CHHHHHHCCCCE-EEEEECCCCEEEEEECCCCCH-HEEEECC-----
T ss_conf 999986--512113233488998644-0-12--100220204425-776522681489984477541-2056213-----
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCC--CCCHHHHHHHHHHHCCCCCC
Q ss_conf 13456750215887799955466899998059999589777--75725799999723088631
Q 000396 285 CSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPKLK--SLDVKPLGCKLKDIYFPYIQ 345 (1576)
Q Consensus 285 ~s~~~~ew~l~~~ir~ps~eEi~~s~sGTFT~VVI~el~~~--~~~i~~Lkr~La~IYh~yL~ 345 (1576)
+..+..... +.....+|| +|++.-.+-. +....+| +.|..-|..||.
T Consensus 151 ----~~~~~~~~~-------~~~~~~~GT--~I~L~lk~d~~efl~~~~i-~~likkys~fi~ 199 (208)
T d1uyla_ 151 ----GGSFTVRTD-------TGEPMGRGT--KVILHLKEDQTEYLEERRI-KEIVKKHSQFIG 199 (208)
T ss_dssp ----TTEEEEEEC-------CSSCCSSEE--EEEEEECGGGGGGGSHHHH-HHHHHHHCTTCS
T ss_pred ----CCCCEEEEC-------CCCCCCCCC--EEEEEECCCHHHHCCHHHH-HHHHHHHHCCCC
T ss_conf ----777247741-------566678884--8999827875887199999-999998755667
No 7
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=99.19 E-value=1.7e-10 Score=86.88 Aligned_cols=107 Identities=24% Similarity=0.356 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHCCHHCCCCCCCCEEEEEEEEE--C-CC--EEEEEECCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCC
Q ss_conf 98999999931102100138996079999961--6-98--5999979999996769675311334542000000114689
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNI--A-ED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGG 233 (1576)
Q Consensus 159 sl~sAIAELVDNSIDA~~~N~~A~rI~I~I~~--d-~~--~I~I~DNG~GMs~deL~~~~~wg~~g~S~kR~~~a~~~Gg 233 (1576)
++.+||+||||||+||...+.....+.|.+.. . .. .|.|.|||+||+++++..+ +..+..+
T Consensus 22 ~L~~~l~eLi~Naida~~~~~~~~~i~i~i~~~~~~~~~~~i~V~DnG~Gi~~~~~~~~--f~~~~~s------------ 87 (219)
T d2hkja3 22 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNA--FGRVLYS------------ 87 (219)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEEECSCCCCGGGHHHH--HHCCCSS------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHH--CCCEEEC------------
T ss_conf 99999999999999988718985239999998638998999999858988887898741--0321760------------
Q ss_pred CCCCCCCCCCCCCCCHHHHH----HCCCCEEEEEEEECCCCEEEEEEEEH
Q ss_conf 99998997653346213445----30347799999507981599999732
Q 000396 234 KPPYLTPFFGMFGYGGPIAS----MHLGRRALVSSKTKVSKEVYTLHLEK 279 (1576)
Q Consensus 234 k~p~~~~~LGrFGvGlK~As----fsLG~~itV~TK~~gs~~v~~l~Ld~ 279 (1576)
+....+...|.+|+|++.+. ++.|+.+.|.|+..+....+.+.+..
T Consensus 88 ~~~~~~~~~G~~GlGl~~~~~~s~~~~g~~i~V~S~~~~~~~~~~~~~~~ 137 (219)
T d2hkja3 88 SKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKI 137 (219)
T ss_dssp CCCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECC
T ss_conf 23465326676188999999999983992799998814898499996055
No 8
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.29 E-value=1.2e-05 Score=53.34 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHCCHHCCCCCCCCEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCC-
Q ss_conf 9899999993110210013899607999996169859999799999967696753113345420000001146899999-
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY- 237 (1576)
Q Consensus 159 sl~sAIAELVDNSIDA~~~N~~A~rI~I~I~~d~~~I~I~DNG~GMs~deL~~~~~wg~~g~S~kR~~~a~~~Ggk~p~- 237 (1576)
-+...+-|+++||+|....+...++|.|.|+.+.++|+|.|||+||.-+--.. -+.+.+. -....+..|++...
T Consensus 53 gl~ki~dEil~Na~D~~~r~~~~~~I~v~i~~~~~si~V~d~GrGIPv~~h~~---~~~~~~e--~ift~l~ag~nfd~~ 127 (239)
T d1pvga2 53 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK---ENIYIPE--MIFGHLLTSSNYDDD 127 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTTEEEEEEESSCCCCSBCTT---TCSBHHH--HHHHSSSEESCCCTT
T ss_pred CCEEECCEEEECCCCHHHHCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCC---CCCCHHH--EEEEEECCCCCCCCC
T ss_conf 20000441123202112312456569999817999899985675414400245---5311003--004762135433455
Q ss_pred -CCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf -8997653346213445303477999995079815999997
Q 000396 238 -LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHL 277 (1576)
Q Consensus 238 -~~~~LGrFGvGlK~AsfsLG~~itV~TK~~gs~~v~~l~L 277 (1576)
.+-.-|+.|+|.+ +.-.+...++|.+........+....
T Consensus 128 ~~k~sgGlnGvG~~-vvNalS~~f~vev~~~~~g~~~~q~~ 167 (239)
T d1pvga2 128 EKKVTGGRNGYGAK-LCNIFSTEFILETADLNVGQKYVQKW 167 (239)
T ss_dssp SCCCCSCCSSCHHH-HHHHTEEEEEEEEEETTTTEEEEEEE
T ss_pred CCEEECCEECCCEE-EHHHHHHHHHEEEEEEECCCEEEEEE
T ss_conf 42220770230101-00022476321458940483588896
No 9
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=97.84 E-value=8.9e-05 Score=47.26 Aligned_cols=106 Identities=15% Similarity=0.216 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHCCHHCCCCCCCCEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHH------CCCCCCCHHCCCCCCC
Q ss_conf 8998999999931102100138996079999961698599997999999676967531------1334542000000114
Q 000396 157 DYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVK------WGKMGASLHRASKAQG 230 (1576)
Q Consensus 157 ~Ysl~sAIAELVDNSIDA~~~N~~A~rI~I~I~~d~~~I~I~DNG~GMs~deL~~~~~------wg~~g~S~kR~~~a~~ 230 (1576)
..-+...+-|+||||+|..... .+.+|.|.+. ..++|.|.|||+||.-+--..... ++.+..+
T Consensus 24 ~~Gl~~l~~Eil~Na~De~~~~-~~~~i~v~~~-~dg~i~V~ddG~GIpv~~h~~~~~~~~e~if~~l~~~--------- 92 (212)
T d1kija2 24 VEGYHHLFKEILDNAVDEALAG-YATEILVRLN-EDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSG--------- 92 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-SCCEEEEEEC-TTSCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEE---------
T ss_pred CCCHHHHHHHHHHHHHHHHHHC-CCCEEEEEEC-CCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCC---------
T ss_conf 8515655464443341000203-7864888990-8980999988843120111346960479999887034---------
Q ss_pred CCCCCC--CCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf 689999--989976533462134453034779999950798159999973
Q 000396 231 IGGKPP--YLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 231 ~Ggk~p--~~~~~LGrFGvGlK~AsfsLG~~itV~TK~~gs~~v~~l~Ld 278 (1576)
++.. ..+-.-|+.|+|++ +.-.+...++|.+++.+.. ++....
T Consensus 93 --~~~d~~~~~~sgG~hGvGa~-vvNalS~~~~v~v~r~~k~--~~~~f~ 137 (212)
T d1kija2 93 --GKFEQGAYKVSGGLHGVGAS-VVNALSEWTVVEVFREGKH--HRIAFS 137 (212)
T ss_dssp --SGGGGSSCCCCSCSSTTSHH-HHHHTEEEEEEEEEETTEE--EEEEEE
T ss_pred --CCCCCCCCEECCCCCCCCCE-EEEEECCCEEEEEEEECCE--EEEEEE
T ss_conf --56667773323777653434-7899636129999991010--005885
No 10
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]}
Probab=97.74 E-value=0.00011 Score=46.53 Aligned_cols=109 Identities=15% Similarity=0.206 Sum_probs=67.9
Q ss_pred HHHHHCCC-CCCHHHHHHHHHHCCHHCCCCCCCCEEEEEEEEECCCEEEEEECCCCCCHHHHHH------HHHCCCCCCC
Q ss_conf 78850789-8998999999931102100138996079999961698599997999999676967------5311334542
Q 000396 149 DLLRELPE-DYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENS------IVKWGKMGAS 221 (1576)
Q Consensus 149 ~lL~~l~~-~Ysl~sAIAELVDNSIDA~~~N~~A~rI~I~I~~d~~~I~I~DNG~GMs~deL~~------~~~wg~~g~S 221 (1576)
.+.+-... ..-+..-+-|+||||+|..... .+.+|.|.+.- .++|.|.|||+|+.-+--.. -+-|+.+..
T Consensus 23 ~mYiGs~~~~~gl~~l~~Eil~Na~De~~~~-~~~~i~v~i~~-dgsIsV~ddGrGIPv~~h~~~~~~~~e~if~~l~t- 99 (219)
T d1ei1a2 23 GMYIGDTDDGTGLHHMVFEVVDNAIDEALAG-HCKEIIVTIHA-DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA- 99 (219)
T ss_dssp HHHHCCSSSSHHHHHHHHHHHHHHHHHHHTT-CCCEEEEEECT-TSCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTE-
T ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCCEEEEECC-CCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH-
T ss_conf 7688548876520343676764355664079-76620478928-98199997875522331676698656436342430-
Q ss_pred HHCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCE
Q ss_conf 0000001146899999--8997653346213445303477999995079815
Q 000396 222 LHRASKAQGIGGKPPY--LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKE 271 (1576)
Q Consensus 222 ~kR~~~a~~~Ggk~p~--~~~~LGrFGvGlK~AsfsLG~~itV~TK~~gs~~ 271 (1576)
|++... .+-..|+.|+|++ ++-.+...++|.+++.+..+
T Consensus 100 ----------g~~fd~~~~~~sgG~nGvG~~-~~NalS~~f~v~~~r~g~~y 140 (219)
T d1ei1a2 100 ----------GGKFDDNSYKVSGGLHGVGVS-VVNALSQKLELVIQREGKIH 140 (219)
T ss_dssp ----------ESCSSSSSCSSCSCCSSCHHH-HHHHTEEEEEEEEEETTEEE
T ss_pred ----------CCCCCCCCCEEECCCCCCCEE-EEEEEEEEEEEEEEECCEEE
T ss_conf ----------158888763247675664624-77876138999999899999
No 11
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=97.66 E-value=0.00023 Score=44.38 Aligned_cols=116 Identities=19% Similarity=0.223 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHCCHHCCCCCC-----CCEEEEEEEEECCC--EEEEEECCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCC
Q ss_conf 989999999311021001389-----96079999961698--59999799999967696753113345420000001146
Q 000396 159 TFETALADLIDNSLQAVWTNA-----KNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGI 231 (1576)
Q Consensus 159 sl~sAIAELVDNSIDA~~~N~-----~A~rI~I~I~~d~~--~I~I~DNG~GMs~deL~~~~~wg~~g~S~kR~~~a~~~ 231 (1576)
.+..++..|++||++|+..+. ....|.|.+..... .|.|.|||.||+++++..+... .++.+.... ...
T Consensus 53 ~l~qvl~NLl~NAi~~t~~~~~~~~~~~~~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~~---f~tt~~~~~-~~~ 128 (193)
T d1gkza2 53 PLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDY---HFTTAEAST-QDP 128 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTST---TCCCC--------
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHCCC---CEECCCCCC-CCC
T ss_conf 9999999999999984415704403566439999970588899999559998799999975677---614455555-444
Q ss_pred CC---------CCCCCCCCCCCCCCCHHHH---HHCCCCEEEEEEEECCCCEEEEEEEEH
Q ss_conf 89---------9999899765334621344---530347799999507981599999732
Q 000396 232 GG---------KPPYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1576)
Q Consensus 232 Gg---------k~p~~~~~LGrFGvGlK~A---sfsLG~~itV~TK~~gs~~v~~l~Ld~ 279 (1576)
++ .........+-.|+|+..+ .-.+|-.+.|.|.. |.-..+.+.|.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~G~GlGL~i~k~ive~~gG~i~v~S~~-g~Gt~f~l~L~~ 187 (193)
T d1gkza2 129 RISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ-GIGTDVYLRLRH 187 (193)
T ss_dssp ------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET-TTEEEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC-CCCEEEEEEECC
T ss_conf 56432355443343334554567867899999999879989999449-985699999889
No 12
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}
Probab=97.61 E-value=0.00037 Score=43.00 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHCCHHCCCCCCCCEEEEEEEEECCC--EEEEEECCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCC
Q ss_conf 98999999931102100138996079999961698--5999979999996769675311334542000000114689999
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sAIAELVDNSIDA~~~N~~A~rI~I~I~~d~~--~I~I~DNG~GMs~deL~~~~~wg~~g~S~kR~~~a~~~Ggk~p 236 (1576)
.+..++.-||+||+... ...|.|++..... .|.|.|||.||+++++..+ | .+ +. +..
T Consensus 47 ~l~~vl~NLi~NAik~~-----~~~i~i~~~~~~~~~~i~V~D~G~GI~~e~~~~i--F-------~~----F~---r~~ 105 (161)
T d1bxda_ 47 SIKRAVANMVVNAARYG-----NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHL--F-------QP----FV---RGD 105 (161)
T ss_dssp HHHHHHHHHHHHHHTTC-----CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCS--S-------CC----CC---CCS
T ss_pred HHHHHHHHHHHHHHHHC-----CCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHH--H-------CC----CE---ECC
T ss_conf 99999999999999857-----9839999998699999999985878899999987--4-------78----44---887
Q ss_pred CCCCCCCCCCCCHHHH---HHCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf 9899765334621344---53034779999950798159999973
Q 000396 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 237 ~~~~~LGrFGvGlK~A---sfsLG~~itV~TK~~gs~~v~~l~Ld 278 (1576)
..+ ..+-.|+|+..+ .-.+|.++.+.|...+ -..+.+.+.
T Consensus 106 ~~~-~~~g~GLGL~ivk~iv~~hgG~i~v~s~~~~-Gt~f~v~lP 148 (161)
T d1bxda_ 106 SAR-TISGTGLGLAIVQRIVDNHNGMLELGTSERG-GLSIRAWLP 148 (161)
T ss_dssp CCC-CCCCCSCCCCTTHHHHHHHTSEEEEEEETTT-EEEEEEEEC
T ss_pred CCC-CCCCCCCHHHHHHHHHHHCCCEEEEEECCCC-CEEEEEEEE
T ss_conf 888-5898774599999999987998999972999-189999998
No 13
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=97.59 E-value=0.00041 Score=42.66 Aligned_cols=105 Identities=18% Similarity=0.157 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHCCHHCCCCCCCCEEEEEEEEECC--CEEEEEECCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCCCC
Q ss_conf 99899999993110210013899607999996169--8599997999999676967531133454200000011468999
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1576)
Q Consensus 158 Ysl~sAIAELVDNSIDA~~~N~~A~rI~I~I~~d~--~~I~I~DNG~GMs~deL~~~~~wg~~g~S~kR~~~a~~~Ggk~ 235 (1576)
..+..++.-||+||+.++..+.....|.|.+.... -.|.|.|||.||+++++..+.. + +-.+...
T Consensus 48 ~~l~qvl~NLi~NAik~t~~~~~~~~i~i~~~~~~~~~~i~V~D~G~GI~~~~~~~iF~---------~----F~~~~~~ 114 (161)
T d2c2aa2 48 TRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFE---------Q----FYRVDSS 114 (161)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGS---------T----TCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHC---------C----CEECCCC
T ss_conf 99999999999999996360797530467788559999999998277779899988639---------8----4876788
Q ss_pred CCCCCCCCCCCCCHHHH---HHCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf 99899765334621344---53034779999950798159999973
Q 000396 236 PYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 236 p~~~~~LGrFGvGlK~A---sfsLG~~itV~TK~~gs~~v~~l~Ld 278 (1576)
.....+=.|+|+..+ .-.+|..+.|.|.... -..+.+.+.
T Consensus 115 --~~~~~~G~GLGL~i~k~iv~~hgG~i~v~s~~~~-Gt~f~i~lP 157 (161)
T d2c2aa2 115 --LTYEVPGTGLGLAITKEIVELHGGRIWVESEVGK-GSRFFVWIP 157 (161)
T ss_dssp ---------CCCTHHHHHHHHHHTTCEEEEEEETTT-EEEEEEEEE
T ss_pred --CCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC-EEEEEEEEE
T ss_conf --8788893457999999999987998999964999-069999998
No 14
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}
Probab=97.59 E-value=0.00058 Score=41.63 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHCCHHCCCCCCCCEEEEEEEEECCC--EEEEEECCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCCCC
Q ss_conf 998999999931102100138996079999961698--599997999999676967531133454200000011468999
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1576)
Q Consensus 158 Ysl~sAIAELVDNSIDA~~~N~~A~rI~I~I~~d~~--~I~I~DNG~GMs~deL~~~~~wg~~g~S~kR~~~a~~~Ggk~ 235 (1576)
..+..++.-|++||+.+. ...|.|.+..... .|.|.|||.||+.+++..+.. + + .+.
T Consensus 43 ~~l~~vl~NLl~NAik~~-----~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~---------~----F---~r~ 101 (146)
T d1id0a_ 43 NDFVEVMGNVLDNACKYC-----LEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFD---------R----G---QRV 101 (146)
T ss_dssp HHHHHHHHHHHHHHHHHC-----SSEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGS---------C----C---CCT
T ss_pred HHHHHHHHHHHHHHHHHH-----CCCEEEEEEEECCEEEEEEEEECCCCCHHHHHHHCC---------C----C---CCC
T ss_conf 999999999999999860-----098899999609989999995079999899999728---------9----6---348
Q ss_pred CCCCCCCCCCCCCHHHH---HHCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf 99899765334621344---53034779999950798159999973
Q 000396 236 PYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 236 p~~~~~LGrFGvGlK~A---sfsLG~~itV~TK~~gs~~v~~l~Ld 278 (1576)
...+ +-.|+|+..+ .-..|-++.+.|...+. ..+++.+.
T Consensus 102 ~~~~---~G~GLGL~I~k~iv~~h~G~i~~~s~~~~G-t~f~i~lP 143 (146)
T d1id0a_ 102 DTLR---PGQGVGLAVAREITEQYEGKIVAGESMLGG-ARMEVIFG 143 (146)
T ss_dssp TCCC---TTCCSCHHHHHHHHHHTTCEEEEEECTTSS-EEEEEEEC
T ss_pred CCCC---CCEEHHHHHHHHHHHHCCCEEEEEECCCCE-EEEEEEEE
T ss_conf 9998---970379999999999859989999749984-69999994
No 15
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=97.43 E-value=0.00035 Score=43.15 Aligned_cols=110 Identities=19% Similarity=0.160 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHCCHHCCCCCC----CCEEEEEEEEECC--CEEEEEECCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCC
Q ss_conf 989999999311021001389----9607999996169--8599997999999676967531133454200000011468
Q 000396 159 TFETALADLIDNSLQAVWTNA----KNERRLISVNIAE--DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIG 232 (1576)
Q Consensus 159 sl~sAIAELVDNSIDA~~~N~----~A~rI~I~I~~d~--~~I~I~DNG~GMs~deL~~~~~wg~~g~S~kR~~~a~~~G 232 (1576)
.+..++..|++||+.|...+. ....|.|.+.... -.|.|.|||.||+++++..+... .++.++..
T Consensus 60 ~l~qvl~NLl~NA~~~~~~~~~~~~~~~~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~iF~~---f~~~~~~~------ 130 (190)
T d1jm6a2 60 HLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSY---MYSTAPTP------ 130 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCTTSCCCEEEEEEECSSEEEEEEEECSCCCCGGGTTGGGCT---TCCCSCCC------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCCHHHHHHHHCC---CEECCCCC------
T ss_conf 999999999999999725268644324318999981770899999016999989999998575---62567767------
Q ss_pred CCCCCCCCCCCCCCCCHHHHH---HCCCCEEEEEEEECCCCEEEEEEEEH
Q ss_conf 999998997653346213445---30347799999507981599999732
Q 000396 233 GKPPYLTPFFGMFGYGGPIAS---MHLGRRALVSSKTKVSKEVYTLHLEK 279 (1576)
Q Consensus 233 gk~p~~~~~LGrFGvGlK~As---fsLG~~itV~TK~~gs~~v~~l~Ld~ 279 (1576)
.........+=+|+|+..+- -.+|..+.+.|.. +.-..+.+.+..
T Consensus 131 -~~~~~~~~~~G~GLGL~i~k~ive~hgG~I~v~s~~-g~Gt~f~i~lP~ 178 (190)
T d1jm6a2 131 -QPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSME-GFGTDAVIYLKA 178 (190)
T ss_dssp ----------CCSSCHHHHHHHHHHHTTCEEEEEEET-TTEEEEEEEEES
T ss_pred -CCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC-CCCEEEEEEEEC
T ss_conf -675544344888752999999999879989999549-995499999858
No 16
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.39 E-value=0.00095 Score=40.14 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHCCHHCCCCCCCCEEEEEEEEECCC--EEEEEECCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCCCC
Q ss_conf 998999999931102100138996079999961698--599997999999676967531133454200000011468999
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1576)
Q Consensus 158 Ysl~sAIAELVDNSIDA~~~N~~A~rI~I~I~~d~~--~I~I~DNG~GMs~deL~~~~~wg~~g~S~kR~~~a~~~Ggk~ 235 (1576)
..+..+|.-|++||+... ++..|.|++....+ .|.|.|||.||+++++..+.. +... +...
T Consensus 43 ~~l~~vl~NLl~NAiky~----~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~ife---------~f~r----~~~~ 105 (148)
T d1ysra1 43 AGLRLAVDNAIANAVKHG----GATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFE---------RFSR----GSTA 105 (148)
T ss_dssp HHHHHHHHHHHHHHHHTT----CCSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHT---------SCC---------
T ss_pred HHHHHHHHHHHHHHHHHC----CCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCC---------CCCC----CCCC
T ss_conf 999999999999988866----9948999997049999999997487989799997557---------6344----7999
Q ss_pred CCCCCCCCCCCCCHHHH---HHCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf 99899765334621344---5303477999995079815999997
Q 000396 236 PYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHL 277 (1576)
Q Consensus 236 p~~~~~LGrFGvGlK~A---sfsLG~~itV~TK~~gs~~v~~l~L 277 (1576)
.-+-.|+|+..+ .-..|..+.+.|...+.. .+.+.+
T Consensus 106 -----~~~G~GLGL~i~~~iv~~hgG~i~~~s~~~~Gt-~f~i~l 144 (148)
T d1ysra1 106 -----SHSGSGLGLALVAQQAQLHGGTASLENSPLGGA-RLVLRL 144 (148)
T ss_dssp -----------CCCHHHHHHHHHTTCEEEEEECTTSSE-EEEEEE
T ss_pred -----CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEE-EEEEEE
T ss_conf -----989715799999999998499899997699837-999999
No 17
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}
Probab=97.13 E-value=0.0023 Score=37.49 Aligned_cols=88 Identities=22% Similarity=0.245 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHCCHHCCCCCCCCEEEEEEEEECCC--EEEEEECCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCC
Q ss_conf 98999999931102100138996079999961698--5999979999996769675311334542000000114689999
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1576)
Q Consensus 159 sl~sAIAELVDNSIDA~~~N~~A~rI~I~I~~d~~--~I~I~DNG~GMs~deL~~~~~wg~~g~S~kR~~~a~~~Ggk~p 236 (1576)
.+..|+.|++-||+.....+.....|.|.+....+ .|.|.|||.||+..+... .....
T Consensus 39 di~~av~E~v~Nai~ha~~~~~~~~I~i~~~~~~~~l~i~i~D~G~gi~~~~~~~------------------~~~~~-- 98 (139)
T d1th8a_ 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIPDIEEAR------------------QPLFT-- 98 (139)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCSCHHHHT------------------CCC----
T ss_pred HHHHHHHHHHHHHHHEECCCCCCCEEEEEEEEECCEEEEEECCCCCCCCCCCCCC------------------CCCCE--
T ss_conf 9999998864436541237899957999999806899999823666624512335------------------66521--
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCEEEEEEEECC
Q ss_conf 98997653346213445303477999995079
Q 000396 237 YLTPFFGMFGYGGPIASMHLGRRALVSSKTKV 268 (1576)
Q Consensus 237 ~~~~~LGrFGvGlK~AsfsLG~~itV~TK~~g 268 (1576)
..+..+.-|+|+... -.++..+.+.|....
T Consensus 99 -~~~~~~~~GlGL~iv-~~l~d~i~i~s~~~~ 128 (139)
T d1th8a_ 99 -TKPELERSGMGFTIM-ENFMDEVIVESEVNK 128 (139)
T ss_dssp ------CCCSCHHHHH-HHHSSEEEEEEETTT
T ss_pred -ECCCCCCCHHHHHHH-HHHCCEEEEEECCCC
T ss_conf -135689753789999-984988999974999
No 18
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=96.92 E-value=0.00049 Score=42.14 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHCCHHCCCCCCCCEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 98999999931102100138996079999961698599997999999676967531133454200000011468999998
Q 000396 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYL 238 (1576)
Q Consensus 159 sl~sAIAELVDNSIDA~~~N~~A~rI~I~I~~d~~~I~I~DNG~GMs~deL~~~~~wg~~g~S~kR~~~a~~~Ggk~p~~ 238 (1576)
.+-..|-|+||||+|-.... -+++|.|.+.-+ ++|.|.|||+||.-+--. ..+.|
T Consensus 5 glhHlv~EivDNsiDEa~aG-~~~~I~V~l~~D-~si~V~D~GRGIPvd~h~------~~~~~----------------- 59 (168)
T d1s14a_ 5 RPNHLGQEVIDNSVDEALAG-HAKRVDVILHAD-QSLEVIDDGRGMPVDIHP------EEGVP----------------- 59 (168)
T ss_dssp STHHHHHHHHHHHHHHHHTT-SCSEEEEEECTT-SCEEEEECSSCCCCSBCT------TTCSB-----------------
T ss_pred CCCEEEEEEEECHHHHHHCC-CCCEEEEEEECC-CEEEEEEEECCCCEEEEC------CCCCC-----------------
T ss_conf 87518865520689899718-997899999689-849999984565356613------47972-----------------
Q ss_pred CCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCEEEEEEEEHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99765334621344530347799999507981599999732677511345675021588779995546689999805999
Q 000396 239 TPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVE 318 (1576)
Q Consensus 239 ~~~LGrFGvGlK~AsfsLG~~itV~TK~~gs~~v~~l~Ld~e~L~~~s~~~~ew~l~~~ir~ps~eEi~~s~sGTFT~VV 318 (1576)
.+. -.+|. .+.=.|...++|.+++.|.. |...+..-.... .+.. .....+..+|| .|.
T Consensus 60 --~~e-~v~t~-SVVNALS~~l~v~v~RdGk~--~~q~f~~G~~~~--------~l~~------~~~~~~~~tGT--~I~ 117 (168)
T d1s14a_ 60 --AVE-LILCI-SVVNALSKRVEVNVRRDGQV--YNIAFENGEKVQ--------DLQV------VGTCGKRNTGT--SVH 117 (168)
T ss_dssp --HHH-HHHHT-SHHHHHEEEEEEEEEETTEE--EEEEEETTEEEE--------EEEE------EEECCTTCCEE--EEE
T ss_pred --HHH-CCCCE-EEEEECCCEEEEEEEECCEE--EEEEECCCCCCC--------CCCC------EEECCCCCCCE--EEE
T ss_conf --454-25750-59262667599999999999--999987994078--------6410------02025489868--999
Q ss_pred EECCCC----CCCCHHHHHHHHHH
Q ss_conf 958977----77572579999972
Q 000396 319 IWEPKL----KSLDVKPLGCKLKD 338 (1576)
Q Consensus 319 I~el~~----~~~~i~~Lkr~La~ 338 (1576)
-|-.+. ..-..+.|+..|..
T Consensus 118 F~PD~~IF~~~~f~~~~l~~rlre 141 (168)
T d1s14a_ 118 FWPDETFFDSPRFSVSRLTHVLKA 141 (168)
T ss_dssp EEECGGGSSCCSCCHHHHHHHHHH
T ss_pred EEECCCEECCCCCCHHHHHHHHHH
T ss_conf 950203202343059999999999
No 19
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.45 E-value=0.0036 Score=36.13 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHCCHHCCCCCC-----CCEEEEEEEEECCC--EEEEEECCCCCCHHHHHH
Q ss_conf 989999999311021001389-----96079999961698--599997999999676967
Q 000396 159 TFETALADLIDNSLQAVWTNA-----KNERRLISVNIAED--KISVFDTGPGMDSTDENS 211 (1576)
Q Consensus 159 sl~sAIAELVDNSIDA~~~N~-----~A~rI~I~I~~d~~--~I~I~DNG~GMs~deL~~ 211 (1576)
.+..++..|+.||++|...+. ....|.|++..... .|.|.|||.||+++++..
T Consensus 64 ~l~qvl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~ 123 (125)
T d1y8oa2 64 HLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDR 123 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCHHHHCC
T ss_conf 999999999999998634232235777516888851489889999999288829899803
No 20
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}
Probab=96.05 E-value=0.0035 Score=36.22 Aligned_cols=53 Identities=13% Similarity=0.034 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHCCHHCCCCCCCCEEEEEEEEE--C--CCEEEEEECCCCCCHHHHHH
Q ss_conf 998999999931102100138996079999961--6--98599997999999676967
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNI--A--EDKISVFDTGPGMDSTDENS 211 (1576)
Q Consensus 158 Ysl~sAIAELVDNSIDA~~~N~~A~rI~I~I~~--d--~~~I~I~DNG~GMs~deL~~ 211 (1576)
..+..++.-|++||++|.... +.....|++.. . .-.|.|.|||.||+++.+..
T Consensus 96 ~~l~qvl~Nll~NAi~~~~~~-~~~~~~I~i~~~~~~~~~~i~v~D~G~gi~~e~l~~ 152 (179)
T d1ixma_ 96 QKLAKLMRKLFHLFDQAVSRE-SENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDD 152 (179)
T ss_dssp HHHHHHHHHHHHHHHHHBCTT-SCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHH
T ss_conf 365789999999999975400-111001021111456579999985899959899999
No 21
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=95.42 E-value=0.017 Score=31.50 Aligned_cols=98 Identities=20% Similarity=0.184 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHCCHHCCCCCCCCEE------EEEEEEE--C--CCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHCCCC
Q ss_conf 99899999993110210013899607------9999961--6--985999979999996769675311334542000000
Q 000396 158 YTFETALADLIDNSLQAVWTNAKNER------RLISVNI--A--EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASK 227 (1576)
Q Consensus 158 Ysl~sAIAELVDNSIDA~~~N~~A~r------I~I~I~~--d--~~~I~I~DNG~GMs~deL~~~~~wg~~g~S~kR~~~ 227 (1576)
..+..++.-|++||++|......... ..+.+.. + .-.|.|.|||.||+++++..+..- .+|
T Consensus 43 ~~l~qvl~NLl~NA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~p---f~s------ 113 (156)
T d1r62a_ 43 DQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYP---MVS------ 113 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHCCC---CEE------
T ss_conf 99999999999999986343897222000113202100125785589998137899898999751656---302------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHH---HHCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf 1146899999899765334621344---53034779999950798159999973
Q 000396 228 AQGIGGKPPYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1576)
Q Consensus 228 a~~~Ggk~p~~~~~LGrFGvGlK~A---sfsLG~~itV~TK~~gs~~v~~l~Ld 278 (1576)
.+.-| .|+|+..+ .-.+|..+.+.|...| ..+.+.+.
T Consensus 114 -----------~k~~G-~GLGL~i~~~iv~~hgG~i~v~s~~gG--t~f~i~LP 153 (156)
T d1r62a_ 114 -----------GREGG-TGLGLSIARNLIDQHSGKIEFTSWPGH--TEFSVYLP 153 (156)
T ss_dssp ------------------CHHHHHHHHHHHHTTCEEEEEEETTE--EEEEEEEE
T ss_pred -----------CCCCC-CCCHHHHHHHHHHHCCCEEEEEEECCC--EEEEEEEE
T ss_conf -----------37899-984389999999987998999995995--89999999
No 22
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=36.37 E-value=7.2 Score=13.24 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEE-EEECCCCCCCEECCCCCCEEC------CCEEEEEEECCC
Q ss_conf 544589633223899750247986777406999731-122046785000179851002------641699851486
Q 000396 991 GILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDG-FCIEDQLGLRRKVDGYGCIDL------SGLLKVKAGYGK 1059 (1576)
Q Consensus 991 e~li~g~~~~~~~vqvfD~~gN~~~~g~~V~i~l~g-l~~~~~~~~~~k~~~~G~~~l------~g~l~v~a~y~k 1059 (1576)
..+.+|.-..-+.+.+-|++|||++ |..|.+..++ -.+.+ ...++|.+|++.+ .|...|+|..+-
T Consensus 11 ~a~AdG~d~~t~tatv~D~~gnpv~-g~~V~f~~~~~~~~~~---~~~~Td~~G~a~v~ltst~aG~~~VtAt~~g 82 (94)
T d1cwva1 11 GAPANGKTAITVEFTVADFEGKPLA-GQEVVITTNNGALPNK---ITEKTDANGVARIALTNTTDGVTVVTAEVEG 82 (94)
T ss_dssp SEESSSSSCEEEEEEEECTTSCBCC-SCEEEEECCTTCBSCE---EEEECCTTSEEEEEEBCSSCEEEEEEEEETT
T ss_pred CCEECCCCCEEEEEEEECCCCCCCC-CCEEEEEECCCCEEEC---CEEEECCCEEEEEEEEECCCEEEEEEEEECC
T ss_conf 9571891319999999949989968-9899999889958803---4369899989999999578668999999998
Done!