Query 000398
Match_columns 1570
No_of_seqs 387 out of 1641
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 07:11:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1246 ArgA N-acetylglutamate 99.0 5.8E-10 1.3E-14 116.1 7.1 85 909-997 38-123 (153)
2 KOG0956 PHD finger protein AF1 98.9 1.1E-09 2.5E-14 131.4 4.4 111 720-831 7-188 (900)
3 KOG1244 Predicted transcriptio 98.8 8.5E-10 1.8E-14 122.2 1.4 93 717-823 223-331 (336)
4 PF00583 Acetyltransf_1: Acety 98.8 1.9E-08 4E-13 89.3 9.7 74 919-993 2-83 (83)
5 KOG1512 PHD Zn-finger protein 98.8 8.6E-10 1.9E-14 122.7 1.1 89 718-821 258-361 (381)
6 PF13508 Acetyltransf_7: Acety 98.8 3.2E-08 7E-13 89.2 11.0 76 914-994 4-79 (79)
7 PF13673 Acetyltransf_10: Acet 98.8 4.2E-08 9.1E-13 92.0 10.5 74 913-992 44-117 (117)
8 PTZ00330 acetyltransferase; Pr 98.6 1.2E-07 2.7E-12 92.5 8.2 84 914-998 53-142 (147)
9 PRK10314 putative acyltransfer 98.6 2.3E-07 5E-12 95.0 9.8 79 918-997 53-134 (153)
10 PRK03624 putative acetyltransf 98.5 4.9E-07 1.1E-11 86.0 8.8 81 914-996 46-129 (140)
11 PRK10146 aminoalkylphosphonic 98.5 5.1E-07 1.1E-11 87.9 8.7 80 916-996 50-137 (144)
12 PLN02706 glucosamine 6-phospha 98.5 8.5E-07 1.8E-11 87.8 10.2 82 914-996 54-143 (150)
13 PRK07922 N-acetylglutamate syn 98.4 8.4E-07 1.8E-11 92.0 9.6 78 917-997 49-127 (169)
14 cd02169 Citrate_lyase_ligase C 98.4 1.2E-06 2.6E-11 99.7 9.4 76 915-996 8-83 (297)
15 PRK09491 rimI ribosomal-protei 98.3 2.6E-06 5.6E-11 84.2 10.0 85 911-997 38-125 (146)
16 PRK07757 acetyltransferase; Pr 98.3 2.6E-06 5.6E-11 84.6 9.8 78 917-997 45-122 (152)
17 PF13527 Acetyltransf_9: Acety 98.3 3.6E-06 7.8E-11 80.8 10.5 79 914-995 42-127 (127)
18 TIGR01575 rimI ribosomal-prote 98.3 3.4E-06 7.3E-11 79.7 9.8 80 916-997 34-116 (131)
19 PLN02825 amino-acid N-acetyltr 98.3 2.7E-06 5.9E-11 103.0 10.3 80 916-997 410-490 (515)
20 KOG4299 PHD Zn-finger protein 98.3 2.4E-07 5.3E-12 112.0 1.3 47 718-764 253-306 (613)
21 PRK10975 TDP-fucosamine acetyl 98.2 5E-06 1.1E-10 86.9 10.4 84 912-996 101-187 (194)
22 KOG4443 Putative transcription 98.2 3.4E-07 7.3E-12 111.0 1.7 94 717-824 17-119 (694)
23 TIGR01890 N-Ac-Glu-synth amino 98.2 4.1E-06 8.9E-11 98.6 10.5 79 917-997 326-405 (429)
24 KOG4443 Putative transcription 98.2 2.1E-07 4.5E-12 112.8 -0.4 115 650-800 36-180 (694)
25 TIGR02382 wecD_rffC TDP-D-fuco 98.2 6.5E-06 1.4E-10 86.2 10.1 80 916-996 102-184 (191)
26 TIGR00124 cit_ly_ligase [citra 98.2 6.1E-06 1.3E-10 95.3 10.2 80 913-998 31-110 (332)
27 TIGR03827 GNAT_ablB putative b 98.2 7.3E-06 1.6E-10 90.6 9.8 84 913-997 158-245 (266)
28 PRK05279 N-acetylglutamate syn 98.1 9E-06 1.9E-10 96.0 10.6 79 917-997 338-417 (441)
29 KOG1244 Predicted transcriptio 98.1 5.7E-07 1.2E-11 100.4 0.3 79 648-761 245-329 (336)
30 COG5141 PHD zinc finger-contai 98.1 1.1E-06 2.3E-11 103.8 2.2 57 714-770 189-258 (669)
31 PRK12308 bifunctional arginino 98.1 9.4E-06 2E-10 99.9 10.2 79 916-997 506-584 (614)
32 KOG1473 Nucleosome remodeling 98.1 3.4E-07 7.3E-12 115.1 -3.5 115 712-831 338-487 (1414)
33 PHA00673 acetyltransferase dom 98.0 2.1E-05 4.5E-10 82.8 10.1 82 914-996 56-145 (154)
34 PRK10140 putative acetyltransf 98.0 3.9E-05 8.4E-10 75.9 10.1 86 913-1000 51-144 (162)
35 TIGR03448 mycothiol_MshD mycot 98.0 2.8E-05 6.1E-10 85.3 9.9 86 911-997 198-288 (292)
36 PRK09831 putative acyltransfer 97.9 2.9E-05 6.4E-10 77.6 8.0 72 916-998 56-127 (147)
37 PF13420 Acetyltransf_4: Acety 97.9 0.0001 2.2E-09 73.0 11.3 76 920-997 58-139 (155)
38 cd04301 NAT_SF N-Acyltransfera 97.9 6.8E-05 1.5E-09 60.6 7.9 60 917-976 3-64 (65)
39 PRK13688 hypothetical protein; 97.8 7.1E-05 1.5E-09 78.2 9.6 75 918-998 50-134 (156)
40 TIGR02406 ectoine_EctA L-2,4-d 97.8 7.2E-05 1.6E-09 76.7 9.5 82 914-996 40-127 (157)
41 KOG0825 PHD Zn-finger protein 97.8 6.7E-06 1.5E-10 100.9 2.1 44 718-761 215-264 (1134)
42 KOG0955 PHD finger protein BR1 97.8 1.1E-05 2.3E-10 103.6 3.5 56 716-771 217-285 (1051)
43 COG0456 RimI Acetyltransferase 97.8 6E-05 1.3E-09 75.8 8.0 76 923-999 72-156 (177)
44 KOG1512 PHD Zn-finger protein 97.8 8.4E-06 1.8E-10 91.7 1.5 75 647-758 277-357 (381)
45 TIGR03103 trio_acet_GNAT GNAT- 97.8 9.9E-05 2.1E-09 90.2 10.6 86 911-997 121-217 (547)
46 PF15446 zf-PHD-like: PHD/FYVE 97.7 2.4E-05 5.1E-10 83.3 3.6 82 720-801 1-142 (175)
47 TIGR03448 mycothiol_MshD mycot 97.7 0.00017 3.7E-09 79.2 9.9 80 915-997 48-128 (292)
48 PF00628 PHD: PHD-finger; Int 97.7 1E-05 2.3E-10 69.0 0.1 42 720-761 1-49 (51)
49 smart00249 PHD PHD zinc finger 97.6 3.7E-05 8E-10 62.5 2.7 41 720-760 1-47 (47)
50 KOG4323 Polycomb-like PHD Zn-f 97.6 3.5E-05 7.6E-10 92.1 3.4 98 719-824 84-225 (464)
51 PRK01346 hypothetical protein; 97.6 0.00022 4.7E-09 82.9 9.7 79 916-997 50-136 (411)
52 KOG3139 N-acetyltransferase [G 97.6 0.0003 6.5E-09 74.8 9.4 92 913-1005 57-154 (165)
53 PHA01807 hypothetical protein 97.5 0.00022 4.7E-09 74.7 7.9 74 914-987 54-134 (153)
54 PRK10562 putative acetyltransf 97.5 0.00034 7.4E-09 69.6 8.4 75 916-997 51-125 (145)
55 PRK10514 putative acetyltransf 97.5 0.00044 9.5E-09 68.0 8.8 73 917-997 54-126 (145)
56 KOG3396 Glucosamine-phosphate 97.5 0.0003 6.5E-09 73.3 7.8 114 863-996 21-143 (150)
57 KOG4299 PHD Zn-finger protein 97.5 7.5E-05 1.6E-09 91.2 4.0 44 718-761 47-93 (613)
58 KOG1973 Chromatin remodeling p 97.5 4.4E-05 9.4E-10 86.3 1.8 45 716-761 219-266 (274)
59 PRK15130 spermidine N1-acetylt 97.5 0.00067 1.5E-08 70.0 10.2 81 915-997 59-145 (186)
60 PF13302 Acetyltransf_3: Acety 97.5 0.00089 1.9E-08 64.8 10.3 73 920-993 65-142 (142)
61 TIGR01686 FkbH FkbH-like domai 97.4 0.00046 1E-08 78.6 9.6 81 913-995 231-319 (320)
62 KOG0954 PHD finger protein [Ge 97.4 3.6E-05 7.7E-10 94.7 0.4 86 716-801 269-365 (893)
63 PF13523 Acetyltransf_8: Acety 97.4 0.0013 2.9E-08 65.6 10.8 88 910-997 45-141 (152)
64 KOG0383 Predicted helicase [Ge 97.3 5.1E-05 1.1E-09 94.5 0.2 49 714-762 43-93 (696)
65 PF08445 FR47: FR47-like prote 97.3 0.001 2.2E-08 63.2 8.6 75 921-997 6-82 (86)
66 TIGR03585 PseH pseudaminic aci 97.3 0.0018 3.8E-08 64.2 10.4 79 917-998 55-139 (156)
67 PRK10809 ribosomal-protein-S5- 97.3 0.0012 2.5E-08 68.8 9.1 83 913-997 77-166 (194)
68 TIGR01211 ELP3 histone acetylt 97.2 0.00081 1.8E-08 82.3 8.6 78 919-997 420-516 (522)
69 COG3393 Predicted acetyltransf 97.2 0.0011 2.4E-08 75.0 8.6 83 913-996 177-261 (268)
70 PRK10151 ribosomal-protein-L7/ 97.1 0.0032 7E-08 64.7 9.9 77 919-997 73-155 (179)
71 COG1247 Sortase and related ac 97.0 0.0029 6.4E-08 67.9 9.4 111 909-1023 48-166 (169)
72 KOG0383 Predicted helicase [Ge 97.0 0.00055 1.2E-08 85.7 4.3 69 735-820 1-91 (696)
73 COG2153 ElaA Predicted acyltra 97.0 0.0027 5.8E-08 67.1 8.6 82 915-997 52-136 (155)
74 COG5034 TNG2 Chromatin remodel 96.9 0.00049 1.1E-08 77.3 2.5 44 717-761 220-268 (271)
75 COG3153 Predicted acetyltransf 96.6 0.0096 2.1E-07 64.2 9.3 137 864-1023 8-152 (171)
76 PF13718 GNAT_acetyltr_2: GNAT 96.2 0.0078 1.7E-07 66.1 6.1 71 938-1009 91-190 (196)
77 PF08444 Gly_acyl_tr_C: Aralky 96.1 0.011 2.4E-07 58.0 5.9 75 917-996 3-79 (89)
78 cd04718 BAH_plant_2 BAH, or Br 96.0 0.004 8.6E-08 65.8 2.7 30 739-768 1-32 (148)
79 PF12568 DUF3749: Acetyltransf 96.0 0.034 7.5E-07 57.8 9.1 81 911-996 38-124 (128)
80 PF00628 PHD: PHD-finger; Int 95.9 0.0023 5E-08 54.8 0.4 48 762-821 2-49 (51)
81 smart00249 PHD PHD zinc finger 95.9 0.0067 1.5E-07 49.3 3.0 34 781-817 12-45 (47)
82 KOG0825 PHD Zn-finger protein 95.7 0.0038 8.2E-08 77.9 1.1 52 758-823 214-266 (1134)
83 KOG1973 Chromatin remodeling p 95.7 0.0036 7.9E-08 71.2 0.7 34 781-821 230-266 (274)
84 COG1670 RimL Acetyltransferase 95.5 0.073 1.6E-06 53.1 9.2 86 911-997 64-158 (187)
85 COG0454 WecD Histone acetyltra 95.3 0.022 4.7E-07 47.9 4.1 44 943-992 87-130 (156)
86 PF12746 GNAT_acetyltran: GNAT 95.3 0.088 1.9E-06 60.3 10.0 76 919-996 171-246 (265)
87 KOG3216 Diamine acetyltransfer 95.3 0.089 1.9E-06 56.4 9.2 99 907-1014 48-155 (163)
88 KOG4323 Polycomb-like PHD Zn-f 94.9 0.0078 1.7E-07 72.8 0.4 43 719-761 169-222 (464)
89 KOG1245 Chromatin remodeling c 94.9 0.0057 1.2E-07 81.9 -1.0 45 717-761 1107-1156(1404)
90 KOG2488 Acetyltransferase (GNA 94.8 0.064 1.4E-06 59.1 6.9 84 913-997 93-182 (202)
91 KOG0957 PHD finger protein [Ge 94.8 0.012 2.5E-07 71.1 1.3 45 717-761 543-596 (707)
92 KOG0957 PHD finger protein [Ge 94.6 0.014 2.9E-07 70.6 1.3 49 719-767 120-190 (707)
93 COG1444 Predicted P-loop ATPas 94.4 0.045 9.8E-07 69.8 5.1 68 941-1010 535-606 (758)
94 COG2388 Predicted acetyltransf 94.3 0.16 3.4E-06 51.0 7.6 73 911-987 15-87 (99)
95 KOG3397 Acetyltransferases [Ge 94.0 0.084 1.8E-06 57.6 5.4 77 919-997 63-141 (225)
96 PF13831 PHD_2: PHD-finger; PD 93.9 0.0083 1.8E-07 49.9 -1.7 33 729-761 3-36 (36)
97 COG3053 CitC Citrate lyase syn 93.7 0.21 4.6E-06 58.1 8.3 80 913-998 37-116 (352)
98 PF14542 Acetyltransf_CG: GCN5 93.4 0.34 7.4E-06 45.9 7.8 56 918-974 4-59 (78)
99 PF13480 Acetyltransf_6: Acety 92.0 0.84 1.8E-05 44.3 8.7 62 913-975 71-132 (142)
100 KOG3138 Predicted N-acetyltran 91.6 0.23 4.9E-06 54.7 4.7 86 934-1024 86-175 (187)
101 KOG4144 Arylalkylamine N-acety 90.3 0.24 5.3E-06 53.4 3.4 59 938-997 102-161 (190)
102 COG4552 Eis Predicted acetyltr 89.2 0.55 1.2E-05 56.0 5.4 84 906-996 34-126 (389)
103 COG3981 Predicted acetyltransf 87.4 1 2.2E-05 49.4 5.6 68 914-983 71-143 (174)
104 KOG3235 Subunit of the major N 86.1 2.3 5E-05 46.5 7.4 82 920-1001 49-139 (193)
105 COG5034 TNG2 Chromatin remodel 86.1 0.37 8.1E-06 55.1 1.7 35 781-822 232-269 (271)
106 KOG0955 PHD finger protein BR1 85.7 0.47 1E-05 62.8 2.5 35 780-821 233-267 (1051)
107 KOG1245 Chromatin remodeling c 83.7 0.5 1.1E-05 64.4 1.5 50 762-825 1111-1160(1404)
108 KOG0956 PHD finger protein AF1 83.2 0.5 1.1E-05 59.6 1.1 37 779-822 18-56 (900)
109 PF06852 DUF1248: Protein of u 82.1 6.8 0.00015 43.3 9.0 83 914-997 48-137 (181)
110 PF07227 DUF1423: Protein of u 82.1 1.5 3.2E-05 53.8 4.4 70 755-830 124-202 (446)
111 PF01429 MBD: Methyl-CpG bindi 81.7 1.3 2.9E-05 42.1 3.1 58 404-465 11-71 (77)
112 COG1243 ELP3 Histone acetyltra 81.1 1.3 2.8E-05 54.5 3.5 64 930-997 446-509 (515)
113 KOG3234 Acetyltransferase, (GN 79.7 2 4.3E-05 46.8 3.9 55 939-994 71-128 (173)
114 KOG0954 PHD finger protein [Ge 79.4 1.1 2.4E-05 57.2 2.2 46 762-821 274-319 (893)
115 cd01396 MeCP2_MBD MeCP2, MBD1, 77.6 3 6.4E-05 40.3 4.0 57 404-465 7-65 (77)
116 TIGR03694 exosort_acyl putativ 77.4 14 0.00031 41.9 9.9 92 902-994 45-195 (241)
117 COG5141 PHD zinc finger-contai 77.3 1.1 2.3E-05 55.1 1.3 35 779-820 206-240 (669)
118 PF13832 zf-HC5HC2H_2: PHD-zin 72.4 2.5 5.4E-05 41.7 2.2 66 720-801 2-88 (110)
119 PF01342 SAND: SAND domain; I 68.0 1.3 2.9E-05 43.0 -0.7 32 656-688 41-73 (82)
120 KOG1081 Transcription factor N 67.7 4.3 9.3E-05 50.2 3.3 45 716-761 87-131 (463)
121 cd00122 MBD MeCP2, MBD1, MBD2, 67.6 7.9 0.00017 35.6 4.2 40 404-443 6-47 (62)
122 KOG1473 Nucleosome remodeling 66.6 1.1 2.4E-05 59.1 -1.9 46 717-762 427-478 (1414)
123 PF13831 PHD_2: PHD-finger; PD 66.0 1.9 4E-05 36.3 -0.1 34 781-820 2-35 (36)
124 cd04718 BAH_plant_2 BAH, or Br 64.9 2.9 6.4E-05 44.9 1.0 25 792-821 1-25 (148)
125 cd04264 DUF619-NAGS DUF619 dom 64.7 13 0.00029 37.5 5.4 57 906-966 5-63 (99)
126 PF01853 MOZ_SAS: MOZ/SAS fami 60.7 22 0.00047 39.9 6.7 85 868-969 26-112 (188)
127 KOG4628 Predicted E3 ubiquitin 60.7 6 0.00013 47.5 2.6 44 719-763 230-276 (348)
128 PF14446 Prok-RING_1: Prokaryo 60.2 4.2 9.1E-05 37.4 1.0 29 719-747 6-38 (54)
129 smart00258 SAND SAND domain. 60.0 3.9 8.4E-05 39.6 0.8 39 649-688 22-64 (73)
130 KOG1701 Focal adhesion adaptor 58.8 1.5 3.3E-05 53.3 -2.6 61 735-800 351-430 (468)
131 TIGR03019 pepcterm_femAB FemAB 58.1 34 0.00073 39.8 8.0 81 915-996 197-280 (330)
132 PF02474 NodA: Nodulation prot 56.8 15 0.00033 40.8 4.7 50 937-987 85-134 (196)
133 PLN03238 probable histone acet 55.8 17 0.00036 43.0 5.0 60 911-970 127-188 (290)
134 COG5628 Predicted acetyltransf 54.7 56 0.0012 34.9 8.0 84 916-1004 40-131 (143)
135 KOG0804 Cytoplasmic Zn-finger 54.7 4.8 0.0001 49.5 0.6 40 718-761 175-218 (493)
136 COG1107 Archaea-specific RecJ- 51.2 10 0.00022 48.2 2.6 26 716-741 66-91 (715)
137 PF01233 NMT: Myristoyl-CoA:pr 49.1 67 0.0015 35.5 7.9 65 911-975 75-148 (162)
138 PF05301 Mec-17: Touch recepto 47.1 26 0.00057 36.9 4.3 62 945-1013 54-116 (120)
139 PTZ00064 histone acetyltransfe 46.8 22 0.00047 44.8 4.3 82 869-967 331-414 (552)
140 PRK13834 putative autoinducer 46.4 1.4E+02 0.0029 33.6 10.0 92 902-994 42-162 (207)
141 PLN03239 histone acetyltransfe 45.7 25 0.00055 42.5 4.6 29 939-967 215-243 (351)
142 PLN00104 MYST -like histone ac 45.0 20 0.00044 44.5 3.7 79 869-964 253-333 (450)
143 KOG1246 DNA-binding protein ju 44.8 21 0.00046 47.4 4.2 51 718-768 155-209 (904)
144 KOG1829 Uncharacterized conser 44.7 13 0.00029 47.3 2.2 57 755-827 502-563 (580)
145 PF14446 Prok-RING_1: Prokaryo 44.0 14 0.0003 34.2 1.6 34 759-800 5-38 (54)
146 KOG2747 Histone acetyltransfer 43.3 21 0.00045 43.8 3.4 72 868-961 208-284 (396)
147 KOG2779 N-myristoyl transferas 41.0 1.4E+02 0.003 36.9 9.4 80 909-988 130-224 (421)
148 KOG4135 Predicted phosphogluco 40.4 52 0.0011 36.2 5.4 58 938-996 108-169 (185)
149 PF10497 zf-4CXXC_R1: Zinc-fin 39.0 14 0.00031 37.6 1.0 21 750-770 57-81 (105)
150 PF05502 Dynactin_p62: Dynacti 38.9 27 0.00059 43.6 3.6 30 729-761 4-33 (483)
151 cd04265 DUF619-NAGS-U DUF619 d 38.3 48 0.001 33.7 4.5 41 926-966 22-63 (99)
152 PRK00756 acyltransferase NodA; 37.8 46 0.00099 37.2 4.6 38 937-975 85-122 (196)
153 KOG3576 Ovo and related transc 37.8 11 0.00024 42.8 0.1 63 728-799 115-189 (267)
154 KOG2036 Predicted P-loop ATPas 37.2 30 0.00066 45.1 3.6 52 890-966 592-643 (1011)
155 PF15446 zf-PHD-like: PHD/FYVE 36.3 23 0.0005 39.3 2.1 34 762-801 2-35 (175)
156 KOG2752 Uncharacterized conser 35.2 25 0.00054 42.1 2.3 21 781-801 146-167 (345)
157 PF13832 zf-HC5HC2H_2: PHD-zin 33.1 19 0.00042 35.6 0.9 30 718-747 55-87 (110)
158 PF13901 DUF4206: Domain of un 32.9 33 0.00071 38.2 2.7 37 717-760 151-195 (202)
159 PRK04023 DNA polymerase II lar 32.0 29 0.00062 46.8 2.4 34 717-761 625-658 (1121)
160 PF13880 Acetyltransf_13: ESCO 30.3 42 0.00091 32.5 2.6 27 940-966 8-34 (70)
161 PF12861 zf-Apc11: Anaphase-pr 30.1 16 0.00034 36.5 -0.2 40 721-761 35-78 (85)
162 PF07897 DUF1675: Protein of u 29.2 25 0.00053 41.6 1.0 31 649-679 252-283 (284)
163 KOG3612 PHD Zn-finger protein 28.8 39 0.00085 42.9 2.7 45 717-761 59-106 (588)
164 KOG1044 Actin-binding LIM Zn-f 26.5 59 0.0013 41.7 3.6 10 657-666 85-94 (670)
165 PF13771 zf-HC5HC2H: PHD-like 26.4 31 0.00068 32.9 1.0 31 717-747 35-68 (90)
166 COG3818 Predicted acetyltransf 26.2 1.6E+02 0.0034 32.2 6.0 52 947-998 94-149 (167)
167 smart00391 MBD Methyl-CpG bind 26.2 88 0.0019 30.5 4.0 36 404-439 8-46 (77)
168 PF00765 Autoind_synth: Autoin 25.1 4.5E+02 0.0097 29.2 9.5 83 911-995 44-153 (182)
169 PF13771 zf-HC5HC2H: PHD-like 24.5 34 0.00074 32.6 0.9 30 761-801 38-69 (90)
170 PF04377 ATE_C: Arginine-tRNA- 24.5 2.8E+02 0.0061 29.5 7.6 59 916-975 42-100 (128)
171 COG0143 MetG Methionyl-tRNA sy 24.1 33 0.00071 43.8 0.9 35 754-799 126-171 (558)
172 COG5027 SAS2 Histone acetyltra 22.5 42 0.00091 40.8 1.3 23 938-960 263-285 (395)
173 KOG2535 RNA polymerase II elon 22.4 85 0.0018 38.4 3.7 64 928-995 480-545 (554)
174 KOG1632 Uncharacterized PHD Zn 22.4 46 0.001 40.1 1.7 60 782-845 74-135 (345)
175 PF03358 FMN_red: NADPH-depend 21.9 2E+02 0.0043 29.5 5.8 71 940-1010 1-75 (152)
176 smart00547 ZnF_RBZ Zinc finger 21.6 56 0.0012 25.1 1.4 9 753-761 1-9 (26)
177 KOG0269 WD40 repeat-containing 21.3 48 0.001 43.6 1.5 42 749-800 763-810 (839)
178 PF07943 PBP5_C: Penicillin-bi 20.6 1.1E+02 0.0025 28.9 3.5 28 920-947 61-88 (91)
179 PRK14559 putative protein seri 20.5 70 0.0015 41.7 2.7 43 730-792 1-50 (645)
180 PLN03086 PRLI-interacting fact 20.4 32 0.0007 44.0 -0.2 100 650-793 408-551 (567)
181 KOG3581 Creatine kinases [Ener 20.4 1.1E+02 0.0025 36.7 4.1 136 866-1029 72-212 (363)
182 PF13639 zf-RING_2: Ring finge 20.4 7.7 0.00017 32.8 -3.8 40 719-761 1-44 (44)
183 PF04958 AstA: Arginine N-succ 20.2 2.2E+02 0.0047 34.9 6.5 26 936-961 120-145 (342)
184 PTZ00399 cysteinyl-tRNA-synthe 20.1 2.3E+02 0.0051 37.1 7.2 39 394-447 518-557 (651)
185 KOG2114 Vacuolar assembly/sort 20.0 41 0.00089 44.6 0.6 40 718-762 840-880 (933)
No 1
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.00 E-value=5.8e-10 Score=116.09 Aligned_cols=85 Identities=21% Similarity=0.320 Sum_probs=76.7
Q ss_pred cccccEEEEEeeCCeEEEEEEEE-eecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhh
Q 000398 909 NYSGFYTAILERGDEIISAASIR-FHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1570)
Q Consensus 909 nfrGFYtaVLEk~geVVSaAsLR-I~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT 987 (1570)
++..|+++ |++|.|||||+++ +.+.+++||..|||+|+||++|+|..||..|+..++.+|+++||+.+. -.+-|-
T Consensus 38 ~i~dF~i~--E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt--~~~~~F 113 (153)
T COG1246 38 EIDDFTII--ERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT--RSPEFF 113 (153)
T ss_pred HHhhheee--eeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec--ccHHHH
Confidence 56777776 8899999999999 899999999999999999999999999999999999999999997775 344566
Q ss_pred hccCceeccH
Q 000398 988 RVFGFTSLEE 997 (1570)
Q Consensus 988 ~KFGF~~I~~ 997 (1570)
.++||+.++.
T Consensus 114 ~~~GF~~vd~ 123 (153)
T COG1246 114 AERGFTRVDK 123 (153)
T ss_pred HHcCCeECcc
Confidence 7999999986
No 2
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.87 E-value=1.1e-09 Score=131.38 Aligned_cols=111 Identities=27% Similarity=0.691 Sum_probs=79.8
Q ss_pred ccceeccCC-----CcEeeCC--CCCccCCCcCCCCCCCCCCCCCCCcc---------ccccCCCCCCCC----------
Q 000398 720 TCGICGDGG-----DLICCDG--CPSTFHQSCLDIQMLPPGDWHCPNCT---------CKFCGLAGEDDA---------- 773 (1570)
Q Consensus 720 ~C~VCGDGG-----dLLcCDg--CprAFH~~CL~pp~VPeGdW~Cp~C~---------Ck~CG~~g~dse---------- 773 (1570)
-|.||.|.. -|++||+ |.-+.|+.|+++..||.|+|||..|. |.+|--.++.-+
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHV 86 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHV 86 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEE
Confidence 488998743 4999996 99999999999999999999999996 666632221000
Q ss_pred -----------------------------------------CCCCCCCCceecCC--cchhhhhhhccccccccccCCCC
Q 000398 774 -----------------------------------------EGDDTTTSALLPCA--MCEKKYHKLCMQEMDALSDNLTG 810 (1570)
Q Consensus 774 -----------------------------------------eeD~~Sv~~LL~CD--QCERaYHv~CL~p~d~~pl~~~p 810 (1570)
.+.....+..+.|+ -|.++||+.|.+....++++...
T Consensus 87 VCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn 166 (900)
T KOG0956|consen 87 VCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGN 166 (900)
T ss_pred EEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceecccc
Confidence 00111234567885 49999999999977767765522
Q ss_pred --CccceeCccchhhHHHHHhHh
Q 000398 811 --LVTSFCGRKCQELSEHLQKYL 831 (1570)
Q Consensus 811 --sg~WFCsqeCqeI~E~LQKLL 831 (1570)
.-.-|| .+|+..|.+|.+--
T Consensus 167 ~~dNVKYC-GYCk~HfsKlkk~~ 188 (900)
T KOG0956|consen 167 ISDNVKYC-GYCKYHFSKLKKSP 188 (900)
T ss_pred ccccceec-hhHHHHHHHhhcCC
Confidence 233466 69999999887653
No 3
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.83 E-value=8.5e-10 Score=122.19 Aligned_cols=93 Identities=28% Similarity=0.694 Sum_probs=74.3
Q ss_pred cccccceecc----------CCCcEeeCCCCCccCCCcCCCC-----CCCCCCCCCCCcc-ccccCCCCCCCCCCCCCCC
Q 000398 717 NDDTCGICGD----------GGDLICCDGCPSTFHQSCLDIQ-----MLPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTT 780 (1570)
Q Consensus 717 NDD~C~VCGD----------GGdLLcCDgCprAFH~~CL~pp-----~VPeGdW~Cp~C~-Ck~CG~~g~dseeeD~~Sv 780 (1570)
+...|-.|-. +.+|+.|..|+++-|+.||... .|-...|+|.+|+ |.+||...++
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsend--------- 293 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSEND--------- 293 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCC---------
Confidence 3457777743 3469999999999999999853 2566889999999 8899876654
Q ss_pred CceecCCcchhhhhhhccccccccccCCCCCccceeCccchhh
Q 000398 781 SALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQEL 823 (1570)
Q Consensus 781 ~~LL~CDQCERaYHv~CL~p~d~~pl~~~psg~WFCsqeCqeI 823 (1570)
..|++|+.|+|.||.+||.+ ++...|++.|-| ..|.+.
T Consensus 294 dqllfcddcdrgyhmyclsp----pm~eppegswsc-~KOG~~ 331 (336)
T KOG1244|consen 294 DQLLFCDDCDRGYHMYCLSP----PMVEPPEGSWSC-HLCLEE 331 (336)
T ss_pred ceeEeecccCCceeeEecCC----CcCCCCCCchhH-HHHHHH
Confidence 35999999999999999986 456678899998 566543
No 4
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.83 E-value=1.9e-08 Score=89.30 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=67.5
Q ss_pred eeCCeEEEEEEEEeecC-----ceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhh---HHHHhhhcc
Q 000398 919 ERGDEIISAASIRFHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE---LMHTWTRVF 990 (1570)
Q Consensus 919 Ek~geVVSaAsLRI~G~-----dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~e---a~~tWT~KF 990 (1570)
+.+|+|||++.+++... ..+.|-.++|.++|||||+|+.|++.+++.++..|+..|++-..++ +..+|. ++
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~-k~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYE-KL 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHH-HT
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHH-Hc
Confidence 67999999999999887 4999999999999999999999999999999999999998877665 558888 89
Q ss_pred Cce
Q 000398 991 GFT 993 (1570)
Q Consensus 991 GF~ 993 (1570)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 5
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.82 E-value=8.6e-10 Score=122.65 Aligned_cols=89 Identities=21% Similarity=0.479 Sum_probs=72.1
Q ss_pred ccccceeccCC---------CcEeeCCCCCccCCCcCCCCC-----CCCCCCCCCCcc-ccccCCCCCCCCCCCCCCCCc
Q 000398 718 DDTCGICGDGG---------DLICCDGCPSTFHQSCLDIQM-----LPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTTSA 782 (1570)
Q Consensus 718 DD~C~VCGDGG---------dLLcCDgCprAFH~~CL~pp~-----VPeGdW~Cp~C~-Ck~CG~~g~dseeeD~~Sv~~ 782 (1570)
...|++|-++- -+|+|..|.-++|++|+..+. +-...|.|..|. |.+|+.+..+. .
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~---------E 328 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIES---------E 328 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccch---------h
Confidence 45788886542 399999999999999998642 445789999998 99999987654 3
Q ss_pred eecCCcchhhhhhhccccccccccCCCCCccceeCccch
Q 000398 783 LLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1570)
Q Consensus 783 LL~CDQCERaYHv~CL~p~d~~pl~~~psg~WFCsqeCq 821 (1570)
+++|+.|+|.||..|.... ..|.+.|+|--.|.
T Consensus 329 ~~FCD~CDRG~HT~CVGL~------~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 329 HLFCDVCDRGPHTLCVGLQ------DLPRGEWICDMRCR 361 (381)
T ss_pred eeccccccCCCCccccccc------cccCccchhhhHHH
Confidence 8999999999999999842 23679999965564
No 6
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.82 E-value=3.2e-08 Score=89.19 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=65.5
Q ss_pred EEEEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCce
Q 000398 914 YTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFT 993 (1570)
Q Consensus 914 YtaVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~ 993 (1570)
+.++++.+++|||++.+.-.+. .+.|..|||.++|||||+|+.||..+.+.+.. ..+++-+.+.++.+|+ ++||+
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~-~~GF~ 78 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNED-FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYE-KLGFE 78 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETTT-EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHH-HTTEE
T ss_pred EEEEEEECCEEEEEEEEEEcCC-EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHH-HCcCC
Confidence 5677799999999999965554 89999999999999999999999999888854 5567777899999999 89998
Q ss_pred e
Q 000398 994 S 994 (1570)
Q Consensus 994 ~ 994 (1570)
+
T Consensus 79 ~ 79 (79)
T PF13508_consen 79 E 79 (79)
T ss_dssp E
T ss_pred C
Confidence 5
No 7
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.77 E-value=4.2e-08 Score=92.02 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=64.7
Q ss_pred cEEEEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCc
Q 000398 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGF 992 (1570)
Q Consensus 913 FYtaVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF 992 (1570)
...+|++.+++|||.+.++ .-++|..+.|.|+|||+|+|++||..+++.++. |++.|++.+...+..+|. ++||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~-~~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYR-KLGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHH-HTT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHH-hCCC
Confidence 4567789999999999986 345699999999999999999999999999988 999999999999999999 6998
No 8
>PTZ00330 acetyltransferase; Provisional
Probab=98.60 E-value=1.2e-07 Score=92.46 Aligned_cols=84 Identities=20% Similarity=0.284 Sum_probs=72.4
Q ss_pred EEEEEeeCCeEEEEEEEEee------cCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhh
Q 000398 914 YTAILERGDEIISAASIRFH------GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1570)
Q Consensus 914 YtaVLEk~geVVSaAsLRI~------G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT 987 (1570)
+.++.+.+|++||.+.+.+. +...++|--+.|.++|||||+|+.|+..+++.++..|+.+|++.+...+..+|+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 44555688999999988653 223578888999999999999999999999999999999999999999999998
Q ss_pred hccCceeccHH
Q 000398 988 RVFGFTSLEES 998 (1570)
Q Consensus 988 ~KFGF~~I~~s 998 (1570)
++||+.+...
T Consensus 133 -k~GF~~~~~~ 142 (147)
T PTZ00330 133 -KLGFRACERQ 142 (147)
T ss_pred -HCCCEEeceE
Confidence 8999998753
No 9
>PRK10314 putative acyltransferase; Provisional
Probab=98.57 E-value=2.3e-07 Score=95.03 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=69.0
Q ss_pred EeeCCeEEEEEEEEeecC--ceeEEeeeeeeccccccChhHHHHHHHHHHHhhc-CccEEEecchhhHHHHhhhccCcee
Q 000398 918 LERGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSL-KVEKLIIPAIAELMHTWTRVFGFTS 994 (1570)
Q Consensus 918 LEk~geVVSaAsLRI~G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sL-GVerLvLPA~~ea~~tWT~KFGF~~ 994 (1570)
+..++++||+|.++..+. ..++|--|||.++|||||+|+.||..+++.++.. +...++|.|...++.+|. +|||.+
T Consensus 53 ~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~-k~GF~~ 131 (153)
T PRK10314 53 GWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQ-SFGFIP 131 (153)
T ss_pred EEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHH-HCCCEE
Confidence 346899999999876543 3589999999999999999999999999998875 788999999988999999 799999
Q ss_pred ccH
Q 000398 995 LEE 997 (1570)
Q Consensus 995 I~~ 997 (1570)
+.+
T Consensus 132 ~g~ 134 (153)
T PRK10314 132 VTE 134 (153)
T ss_pred CCC
Confidence 986
No 10
>PRK03624 putative acetyltransferase; Provisional
Probab=98.49 E-value=4.9e-07 Score=85.96 Aligned_cols=81 Identities=16% Similarity=0.310 Sum_probs=67.3
Q ss_pred EEEEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchh---hHHHHhhhcc
Q 000398 914 YTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIA---ELMHTWTRVF 990 (1570)
Q Consensus 914 YtaVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~---ea~~tWT~KF 990 (1570)
+.+|+..++++||.+.+...+ ..+.+..|+|.++|||||+|+.|+..+++.++.+|+.++.+-..+ .+..+|. ++
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~-k~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYE-AL 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHH-Hc
Confidence 445567789999999886543 457788899999999999999999999999999999998776553 4778886 89
Q ss_pred Cceecc
Q 000398 991 GFTSLE 996 (1570)
Q Consensus 991 GF~~I~ 996 (1570)
||+..+
T Consensus 124 GF~~~~ 129 (140)
T PRK03624 124 GYEEQD 129 (140)
T ss_pred CCcccc
Confidence 999765
No 11
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.47 E-value=5.1e-07 Score=87.90 Aligned_cols=80 Identities=9% Similarity=0.048 Sum_probs=68.0
Q ss_pred EEEeeCCeEEEEEEEEeec-----CceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch---hhHHHHhh
Q 000398 916 AILERGDEIISAASIRFHG-----TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTWT 987 (1570)
Q Consensus 916 aVLEk~geVVSaAsLRI~G-----~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~---~ea~~tWT 987 (1570)
+|++.++++||++.+++.. ...++|--++|.++|||||+|+.||..+++.++..|...+.|-.. ..+..+|.
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~ 129 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYL 129 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHH
Confidence 4567889999999997642 235788899999999999999999999999999999999988755 47889999
Q ss_pred hccCceecc
Q 000398 988 RVFGFTSLE 996 (1570)
Q Consensus 988 ~KFGF~~I~ 996 (1570)
++||....
T Consensus 130 -~~Gf~~~~ 137 (144)
T PRK10146 130 -REGYEQSH 137 (144)
T ss_pred -HcCCchhh
Confidence 89997664
No 12
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.46 E-value=8.5e-07 Score=87.77 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=68.1
Q ss_pred EEEEEee--CCeEEEEEEEEeec------CceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHH
Q 000398 914 YTAILER--GDEIISAASIRFHG------TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHT 985 (1570)
Q Consensus 914 YtaVLEk--~geVVSaAsLRI~G------~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~t 985 (1570)
|.+|.+. +++|||.+.+++.. ..++.|-.|+|.++|||||+|+.|+.++++.++.+|+++|++...++...+
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 3444444 68999999886432 255677779999999999999999999999999999999999988888888
Q ss_pred hhhccCceecc
Q 000398 986 WTRVFGFTSLE 996 (1570)
Q Consensus 986 WT~KFGF~~I~ 996 (1570)
|. ++||....
T Consensus 134 y~-k~GF~~~g 143 (150)
T PLN02706 134 YE-KCGYVRKE 143 (150)
T ss_pred HH-HCcCEEeh
Confidence 87 89998753
No 13
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.43 E-value=8.4e-07 Score=92.04 Aligned_cols=78 Identities=14% Similarity=0.271 Sum_probs=69.1
Q ss_pred EEe-eCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceec
Q 000398 917 ILE-RGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1570)
Q Consensus 917 VLE-k~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I 995 (1570)
|++ .++++||.+.+.+.+.+.++|..++|.++|||+|+|+.|++++++.++..|+.+|++-.. ...+|. |+||+.+
T Consensus 49 va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~-k~GF~~~ 125 (169)
T PRK07922 49 VAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFA-RHGFVEI 125 (169)
T ss_pred EEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHH-HCCCEEC
Confidence 556 889999999998888889999999999999999999999999999999999999986543 367888 8999998
Q ss_pred cH
Q 000398 996 EE 997 (1570)
Q Consensus 996 ~~ 997 (1570)
..
T Consensus 126 ~~ 127 (169)
T PRK07922 126 DG 127 (169)
T ss_pred cc
Confidence 64
No 14
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.36 E-value=1.2e-06 Score=99.70 Aligned_cols=76 Identities=16% Similarity=0.257 Sum_probs=68.2
Q ss_pred EEEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCcee
Q 000398 915 TAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1570)
Q Consensus 915 taVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~ 994 (1570)
..|.+.+++|||++.+.- .+|..|||.++|||||+|+.||..+++.++..|+.+++|-+...+..+|. ++||+.
T Consensus 8 ~~v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYe-k~GF~~ 81 (297)
T cd02169 8 VGIFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFR-GLGFKE 81 (297)
T ss_pred EEEEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHH-HCCCEE
Confidence 344567799999998842 46899999999999999999999999999999999999999988999997 899998
Q ss_pred cc
Q 000398 995 LE 996 (1570)
Q Consensus 995 I~ 996 (1570)
+.
T Consensus 82 ~~ 83 (297)
T cd02169 82 LA 83 (297)
T ss_pred ec
Confidence 88
No 15
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.33 E-value=2.6e-06 Score=84.23 Aligned_cols=85 Identities=20% Similarity=0.220 Sum_probs=70.0
Q ss_pred cccEEEEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecc---hhhHHHHhh
Q 000398 911 SGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPA---IAELMHTWT 987 (1570)
Q Consensus 911 rGFYtaVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA---~~ea~~tWT 987 (1570)
.+|+..++..++++||.+.++.+... +++-.|+|.++|||||+|+.|+..+++.+..+|+..|++.. -..+..+|.
T Consensus 38 ~~~~~~~~~~~~~~vG~~~~~~~~~~-~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~ 116 (146)
T PRK09491 38 ERYLNLKLTVNGQMAAFAITQVVLDE-ATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYE 116 (146)
T ss_pred cCceEEEEEECCeEEEEEEEEeecCc-eEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHH
Confidence 45555666788999999999776544 66778899999999999999999999999999999988754 345667777
Q ss_pred hccCceeccH
Q 000398 988 RVFGFTSLEE 997 (1570)
Q Consensus 988 ~KFGF~~I~~ 997 (1570)
++||+.+..
T Consensus 117 -k~Gf~~~~~ 125 (146)
T PRK09491 117 -SLGFNEVTI 125 (146)
T ss_pred -HcCCEEeee
Confidence 899997764
No 16
>PRK07757 acetyltransferase; Provisional
Probab=98.32 E-value=2.6e-06 Score=84.57 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=68.0
Q ss_pred EEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceecc
Q 000398 917 ILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1570)
Q Consensus 917 VLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I~ 996 (1570)
++..++++||.+.+.+.+...++|-.|+|.++|||+|+|+.|+..+++.+..+|+.++++-. .+..+|. |+||+.+.
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~--~~~~~Y~-k~GF~~~~ 121 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALT--YQPEFFE-KLGFREVD 121 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEe--CcHHHHH-HCCCEEcc
Confidence 34578999999999999999999999999999999999999999999999999999986533 2356676 89999987
Q ss_pred H
Q 000398 997 E 997 (1570)
Q Consensus 997 ~ 997 (1570)
.
T Consensus 122 ~ 122 (152)
T PRK07757 122 K 122 (152)
T ss_pred c
Confidence 6
No 17
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.32 E-value=3.6e-06 Score=80.80 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=63.6
Q ss_pred EEEEEeeCCeEEEEEEEEe-----ecC--ceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHh
Q 000398 914 YTAILERGDEIISAASIRF-----HGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTW 986 (1570)
Q Consensus 914 YtaVLEk~geVVSaAsLRI-----~G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tW 986 (1570)
+++|...+++|||.+.+-. .|. .++-|=-|||.++|||||+++.||.++++.++.-|+..+++-+ ....++
T Consensus 42 ~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y 119 (127)
T PF13527_consen 42 RCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFY 119 (127)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHH
T ss_pred cEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhh
Confidence 5666778999999887633 354 5799999999999999999999999999999999999999876 335667
Q ss_pred hhccCceec
Q 000398 987 TRVFGFTSL 995 (1570)
Q Consensus 987 T~KFGF~~I 995 (1570)
. +|||..+
T Consensus 120 ~-~~G~~~~ 127 (127)
T PF13527_consen 120 R-RFGFEYA 127 (127)
T ss_dssp H-HTTEEEE
T ss_pred h-cCCCEEC
Confidence 5 8999864
No 18
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.31 E-value=3.4e-06 Score=79.67 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=67.4
Q ss_pred EEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEec---chhhHHHHhhhccCc
Q 000398 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIP---AIAELMHTWTRVFGF 992 (1570)
Q Consensus 916 aVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLP---A~~ea~~tWT~KFGF 992 (1570)
+++..++++||.+.++... ....|-.++|.++|||||+|+.|+.++++.+...|+.++++. .-..+..+|+ ++||
T Consensus 34 ~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~-~~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYK-KLGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHH-HcCC
Confidence 3445689999999987644 456788899999999999999999999999999999999984 4456788897 8999
Q ss_pred eeccH
Q 000398 993 TSLEE 997 (1570)
Q Consensus 993 ~~I~~ 997 (1570)
+.+..
T Consensus 112 ~~~~~ 116 (131)
T TIGR01575 112 NEIAI 116 (131)
T ss_pred Ccccc
Confidence 98764
No 19
>PLN02825 amino-acid N-acetyltransferase
Probab=98.27 E-value=2.7e-06 Score=103.02 Aligned_cols=80 Identities=24% Similarity=0.262 Sum_probs=68.6
Q ss_pred EEEeeCCeEEEEEEEEeecC-ceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCcee
Q 000398 916 AILERGDEIISAASIRFHGT-QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1570)
Q Consensus 916 aVLEk~geVVSaAsLRI~G~-dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~ 994 (1570)
+|++.+++|||+|++..+.. +.+||=.|||.++|||+|+|+.||+.+|+.++.+|+++|++-.. .+..+|. ++||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Lltt-~a~~fY~-k~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLTT-RTADWFV-RRGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEeC-cHHHHHH-HCCCEE
Confidence 34689999999999876654 68999999999999999999999999999999999999998653 4555555 899999
Q ss_pred ccH
Q 000398 995 LEE 997 (1570)
Q Consensus 995 I~~ 997 (1570)
...
T Consensus 488 ~~~ 490 (515)
T PLN02825 488 CSI 490 (515)
T ss_pred eCh
Confidence 774
No 20
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.26 E-value=2.4e-07 Score=111.96 Aligned_cols=47 Identities=51% Similarity=1.363 Sum_probs=42.6
Q ss_pred ccccceeccCCCc---EeeCCCCCccCCCcCCCC----CCCCCCCCCCCccccc
Q 000398 718 DDTCGICGDGGDL---ICCDGCPSTFHQSCLDIQ----MLPPGDWHCPNCTCKF 764 (1570)
Q Consensus 718 DD~C~VCGDGGdL---LcCDgCprAFH~~CL~pp----~VPeGdW~Cp~C~Ck~ 764 (1570)
.++|..|+..|.+ ||||+||++||+.||+|| .+|.|.|+|+.|.|+.
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 5699999998876 999999999999999987 3899999999999764
No 21
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.25 E-value=5e-06 Score=86.93 Aligned_cols=84 Identities=11% Similarity=0.037 Sum_probs=70.5
Q ss_pred ccEEEEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch---hhHHHHhhh
Q 000398 912 GFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTWTR 988 (1570)
Q Consensus 912 GFYtaVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~---~ea~~tWT~ 988 (1570)
.++.++.+.++++||.+.+..+....++|-.++|.++|||||+|+.|+..+++.+...|+.+|++-.. ..+..+|.
T Consensus 101 ~~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ye- 179 (194)
T PRK10975 101 HQCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYI- 179 (194)
T ss_pred CcEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHH-
Confidence 34444555678999999998776667899999999999999999999999999999999999987644 45778886
Q ss_pred ccCceecc
Q 000398 989 VFGFTSLE 996 (1570)
Q Consensus 989 KFGF~~I~ 996 (1570)
++||....
T Consensus 180 k~Gf~~~~ 187 (194)
T PRK10975 180 RSGANIES 187 (194)
T ss_pred HCCCeEeE
Confidence 89999754
No 22
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.24 E-value=3.4e-07 Score=111.04 Aligned_cols=94 Identities=29% Similarity=0.818 Sum_probs=71.5
Q ss_pred cccccceeccCC-----CcEeeCCCCCccCCCcCCCCC---CCCCCCCCCCcc-ccccCCCCCCCCCCCCCCCCceecCC
Q 000398 717 NDDTCGICGDGG-----DLICCDGCPSTFHQSCLDIQM---LPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTTSALLPCA 787 (1570)
Q Consensus 717 NDD~C~VCGDGG-----dLLcCDgCprAFH~~CL~pp~---VPeGdW~Cp~C~-Ck~CG~~g~dseeeD~~Sv~~LL~CD 787 (1570)
....|.+|+..| .|+.|..|...||.+|+.... +-.+.|.|+.|+ |..|+..+. ...+++|.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD---------~~kf~~Ck 87 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGD---------PKKFLLCK 87 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCC---------cccccccc
Confidence 456888997654 499999999999999998532 223449999998 999984433 23589999
Q ss_pred cchhhhhhhccccccccccCCCCCccceeCccchhhH
Q 000398 788 MCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELS 824 (1570)
Q Consensus 788 QCERaYHv~CL~p~d~~pl~~~psg~WFCsqeCqeI~ 824 (1570)
.|+-.||.+|+.| ++...+.++|+|. .|..++
T Consensus 88 ~cDvsyh~yc~~P----~~~~v~sg~~~ck-k~~~c~ 119 (694)
T KOG4443|consen 88 RCDVSYHCYCQKP----PNDKVPSGPWLCK-KCTRCR 119 (694)
T ss_pred cccccccccccCC----ccccccCcccccH-HHHhhh
Confidence 9999999999986 3445577999994 444444
No 23
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.23 E-value=4.1e-06 Score=98.64 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=69.5
Q ss_pred EEeeCCeEEEEEEEEeec-CceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceec
Q 000398 917 ILERGDEIISAASIRFHG-TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1570)
Q Consensus 917 VLEk~geVVSaAsLRI~G-~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I 995 (1570)
|++.++++||++.+..+. ...+||-.|+|.++|||||+|+.||+.+++.+++.|+.+|++-+. .+..+|. ++||+.+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~-k~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFR-ERGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHH-HCCCEEC
Confidence 457899999999998774 468999999999999999999999999999999999999887654 4578887 8999999
Q ss_pred cH
Q 000398 996 EE 997 (1570)
Q Consensus 996 ~~ 997 (1570)
..
T Consensus 404 g~ 405 (429)
T TIGR01890 404 SV 405 (429)
T ss_pred Ch
Confidence 75
No 24
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.23 E-value=2.1e-07 Score=112.79 Aligned_cols=115 Identities=23% Similarity=0.575 Sum_probs=78.3
Q ss_pred eecCCCCceeecceeeeccCCccccccceeeccCCcccceeccccccccccccccCCcccccCCCCccccccceeccCC-
Q 000398 650 IHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGICGDGG- 728 (1570)
Q Consensus 650 I~CsCC~KvFSpSeFEaHAGsk~RrPYqNIyLedGrSLLqCqIqAWnkqe~sEk~Gf~~V~vdgdd~NDD~C~VCGDGG- 728 (1570)
..|.+|.+.+|+.+....+- +.-+..||.++.| .+|..|+..|
T Consensus 36 ~ac~~c~~~yH~~cvt~~~~--------~~~l~~gWrC~~c----------------------------rvCe~c~~~gD 79 (694)
T KOG4443|consen 36 LACSDCGQKYHPYCVTSWAQ--------HAVLSGGWRCPSC----------------------------RVCEACGTTGD 79 (694)
T ss_pred hhhhhhcccCCcchhhHHHh--------HHHhcCCcccCCc----------------------------eeeeeccccCC
Confidence 47999999988887643221 1223456665544 3577887544
Q ss_pred --CcEeeCCCCCccCCCcCCCCC--CCCCCCCCCCcc-ccccCCCCCC--------CCCCCCC----------------C
Q 000398 729 --DLICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCT-CKFCGLAGED--------DAEGDDT----------------T 779 (1570)
Q Consensus 729 --dLLcCDgCprAFH~~CL~pp~--VPeGdW~Cp~C~-Ck~CG~~g~d--------seeeD~~----------------S 779 (1570)
.+++|+.|.-+||.||..|+. +|.|.|+|+.|. |..|...... ..+.... .
T Consensus 80 ~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c~s~~~cPvc~~~Y~~~e 159 (694)
T KOG4443|consen 80 PKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPCASLSYCPVCLIVYQDSE 159 (694)
T ss_pred cccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhccCcccccccccccCchHHHhhhhcc
Confidence 599999999999999999874 999999999997 7777643221 0000000 0
Q ss_pred CCceecCCcchhhhhhhcccc
Q 000398 780 TSALLPCAMCEKKYHKLCMQE 800 (1570)
Q Consensus 780 v~~LL~CDQCERaYHv~CL~p 800 (1570)
...++.|++|.++-|..|..-
T Consensus 160 ~~~~~~c~~c~rwsh~~c~~~ 180 (694)
T KOG4443|consen 160 SLPMVCCSICQRWSHGGCDGI 180 (694)
T ss_pred chhhHHHHHhcccccCCCCcc
Confidence 123477888999999998764
No 25
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.21 E-value=6.5e-06 Score=86.19 Aligned_cols=80 Identities=8% Similarity=0.033 Sum_probs=69.0
Q ss_pred EEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch---hhHHHHhhhccCc
Q 000398 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTWTRVFGF 992 (1570)
Q Consensus 916 aVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~---~ea~~tWT~KFGF 992 (1570)
++++.++++||.+.++.+....++|=.+++.++|||||+|+.|+.++++.+..+|+.+|++... +.++.+|. |+||
T Consensus 102 i~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~-klGF 180 (191)
T TIGR02382 102 ILRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYI-RSGA 180 (191)
T ss_pred EEEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH-HcCC
Confidence 3456789999999998776667899999999999999999999999999999999999998754 35788888 8999
Q ss_pred eecc
Q 000398 993 TSLE 996 (1570)
Q Consensus 993 ~~I~ 996 (1570)
+...
T Consensus 181 ~~~~ 184 (191)
T TIGR02382 181 NIES 184 (191)
T ss_pred cccc
Confidence 8654
No 26
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.18 E-value=6.1e-06 Score=95.29 Aligned_cols=80 Identities=23% Similarity=0.299 Sum_probs=71.5
Q ss_pred cEEEEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCc
Q 000398 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGF 992 (1570)
Q Consensus 913 FYtaVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF 992 (1570)
.|++++..+++|||++++ .|. .|.-|||.++|||+|+|+.||.+|++.+...|+.+|+|-+.+....++. ++||
T Consensus 31 d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~-klGF 104 (332)
T TIGR00124 31 EIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFE-YCGF 104 (332)
T ss_pred CEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHH-HcCC
Confidence 467777889999999997 343 4889999999999999999999999999999999999999998888876 8999
Q ss_pred eeccHH
Q 000398 993 TSLEES 998 (1570)
Q Consensus 993 ~~I~~s 998 (1570)
..+...
T Consensus 105 ~~i~~~ 110 (332)
T TIGR00124 105 KTLAEA 110 (332)
T ss_pred EEeeee
Confidence 998863
No 27
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.16 E-value=7.3e-06 Score=90.58 Aligned_cols=84 Identities=24% Similarity=0.236 Sum_probs=69.4
Q ss_pred cEEEEEeeCCeEEEEEEEEee-cCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhH---HHHhhh
Q 000398 913 FYTAILERGDEIISAASIRFH-GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAEL---MHTWTR 988 (1570)
Q Consensus 913 FYtaVLEk~geVVSaAsLRI~-G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea---~~tWT~ 988 (1570)
.+.++++.++++||++++.+. +...+||--++|.++|||||+|+.||..+++.++..|+.+|++.+.... ..++.
T Consensus 158 ~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~- 236 (266)
T TIGR03827 158 VVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFA- 236 (266)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHH-
Confidence 344556779999999998653 3467999999999999999999999999999999999999998877654 44565
Q ss_pred ccCceeccH
Q 000398 989 VFGFTSLEE 997 (1570)
Q Consensus 989 KFGF~~I~~ 997 (1570)
++||+....
T Consensus 237 k~GF~~~G~ 245 (266)
T TIGR03827 237 RLGYAYGGT 245 (266)
T ss_pred HcCCccccE
Confidence 899997543
No 28
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.14 E-value=9e-06 Score=95.96 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=68.9
Q ss_pred EEeeCCeEEEEEEEEeec-CceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceec
Q 000398 917 ILERGDEIISAASIRFHG-TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1570)
Q Consensus 917 VLEk~geVVSaAsLRI~G-~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I 995 (1570)
+++.++++||++.+..+. ...++|-.|+|.++|||||+|+.||.++++.++..|+.+|++-. ..+..+|. +|||+.+
T Consensus 338 va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~-k~GF~~~ 415 (441)
T PRK05279 338 VIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFL-ERGFVPV 415 (441)
T ss_pred EEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHH-HCcCEEC
Confidence 457899999999876553 36799999999999999999999999999999999999998755 45788887 8999998
Q ss_pred cH
Q 000398 996 EE 997 (1570)
Q Consensus 996 ~~ 997 (1570)
..
T Consensus 416 g~ 417 (441)
T PRK05279 416 DV 417 (441)
T ss_pred Ch
Confidence 75
No 29
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.12 E-value=5.7e-07 Score=100.40 Aligned_cols=79 Identities=28% Similarity=0.719 Sum_probs=58.1
Q ss_pred CCeecCCCCceeecceeeeccCCc-cccccceeeccCCcccceeccccccccccccccCCcccccCCCCccccccceecc
Q 000398 648 DGIHCGCCSKILTVSKFEIHAGSK-LRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGICGD 726 (1570)
Q Consensus 648 dGI~CsCC~KvFSpSeFEaHAGsk-~RrPYqNIyLedGrSLLqCqIqAWnkqe~sEk~Gf~~V~vdgdd~NDD~C~VCGD 726 (1570)
+-|.|+-|.+.-|||++.--|.|. ..+-|+ |.+.+| ..|.+||.
T Consensus 245 elvscsdcgrsghpsclqft~nm~~avk~yr-------wqciec----------------------------k~csicgt 289 (336)
T KOG1244|consen 245 ELVSCSDCGRSGHPSCLQFTANMIAAVKTYR-------WQCIEC----------------------------KYCSICGT 289 (336)
T ss_pred hhcchhhcCCCCCcchhhhhHHHHHHHHhhe-------eeeeec----------------------------ceeccccC
Confidence 457999999999998876555552 122232 222223 46889986
Q ss_pred CC---CcEeeCCCCCccCCCcCCCCC--CCCCCCCCCCcc
Q 000398 727 GG---DLICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCT 761 (1570)
Q Consensus 727 GG---dLLcCDgCprAFH~~CL~pp~--VPeGdW~Cp~C~ 761 (1570)
.. +||+||.|++.||+|||.|++ .|+|.|.|..|.
T Consensus 290 senddqllfcddcdrgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 290 SENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred cCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence 54 599999999999999999987 588999998774
No 30
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.11 E-value=1.1e-06 Score=103.76 Aligned_cols=57 Identities=42% Similarity=0.987 Sum_probs=47.7
Q ss_pred CCccccccceeccCC-----CcEeeCCCCCccCCCcCCCCCCCCCCCCCCCcc--------ccccCCCCC
Q 000398 714 DDPNDDTCGICGDGG-----DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT--------CKFCGLAGE 770 (1570)
Q Consensus 714 dd~NDD~C~VCGDGG-----dLLcCDgCprAFH~~CL~pp~VPeGdW~Cp~C~--------Ck~CG~~g~ 770 (1570)
++.=++.|.+|.... -+++||+|.-+.|+.|.+++-+|+|.|+|..|. |.+|-...+
T Consensus 189 ~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dG 258 (669)
T COG5141 189 SDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDG 258 (669)
T ss_pred chhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCC
Confidence 345578899997543 399999999999999999999999999999996 888865543
No 31
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.10 E-value=9.4e-06 Score=99.87 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=69.7
Q ss_pred EEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceec
Q 000398 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1570)
Q Consensus 916 aVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I 995 (1570)
+|++.+++|||++.+.+.....++|-.|+|.+.|||||+|+.||+.+++.++..|+.+|++-.. +..+|. ||||+.+
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYe-k~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFM-KQGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHH-HCCCEEC
Confidence 3567899999999998877778999999999999999999999999999999999999987543 457777 8999988
Q ss_pred cH
Q 000398 996 EE 997 (1570)
Q Consensus 996 ~~ 997 (1570)
..
T Consensus 583 ~~ 584 (614)
T PRK12308 583 SK 584 (614)
T ss_pred Cc
Confidence 75
No 32
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=98.05 E-value=3.4e-07 Score=115.05 Aligned_cols=115 Identities=26% Similarity=0.477 Sum_probs=74.0
Q ss_pred CCCCccccccceeccCCCcEeeCCCCCccCCCcCCCCC--CCCCCCCCCCccccccCCCCCC-----------C-----C
Q 000398 712 DGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCTCKFCGLAGED-----------D-----A 773 (1570)
Q Consensus 712 dgdd~NDD~C~VCGDGGdLLcCDgCprAFH~~CL~pp~--VPeGdW~Cp~C~Ck~CG~~g~d-----------s-----e 773 (1570)
+++-.-++.|.+|.+.|+++||..||+.||..|..++. +|...|.|.-|. +|...+.. . .
T Consensus 338 e~~~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~--~hkvngvvd~vl~~~K~~~~iR~~~i 415 (1414)
T KOG1473|consen 338 EGEIEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCN--IHKVNGVVDCVLPPSKNVDSIRHTPI 415 (1414)
T ss_pred ccceeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhh--hhccCcccccccChhhcccceeccCC
Confidence 34445678999999999999999999999999999875 889999999887 22221110 0 0
Q ss_pred CCCCC---------------CCCceecCCc-chhhhhh-hccccccccccCCCCCccceeCccchhhHHHHHhHh
Q 000398 774 EGDDT---------------TTSALLPCAM-CEKKYHK-LCMQEMDALSDNLTGLVTSFCGRKCQELSEHLQKYL 831 (1570)
Q Consensus 774 eeD~~---------------Sv~~LL~CDQ-CERaYHv-~CL~p~d~~pl~~~psg~WFCsqeCqeI~E~LQKLL 831 (1570)
..+.. -...++.|.. |.+.||. .|+.... + ....+.+.|+| .+|-.-..+|..-+
T Consensus 416 G~dr~gr~ywfi~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~-~-e~~L~d~i~~~-~ee~~rqM~lT~~l 487 (1414)
T KOG1473|consen 416 GRDRYGRKYWFISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTY-V-EMYLCDGIWER-REEIIRQMGLTEEL 487 (1414)
T ss_pred CcCccccchhceeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHH-H-HHhhccchhhh-HHHHHHhccchhhh
Confidence 00000 0123455544 9999999 9998421 1 11224578998 46554444444333
No 33
>PHA00673 acetyltransferase domain containing protein
Probab=98.05 E-value=2.1e-05 Score=82.79 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=71.6
Q ss_pred EEEEEeeCCeEEEEEEEEeec------CceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhh--HHHH
Q 000398 914 YTAILERGDEIISAASIRFHG------TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE--LMHT 985 (1570)
Q Consensus 914 YtaVLEk~geVVSaAsLRI~G------~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~e--a~~t 985 (1570)
..+|.+.+|+|||++.+.+.. ...+.|=.|-|.+.|||||+|+.||..+++.++..|...|.|.|+|+ .+.+
T Consensus 56 ~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~f 135 (154)
T PHA00673 56 HFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQL 135 (154)
T ss_pred EEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHH
Confidence 344557799999999987744 36778999999999999999999999999999999999999999986 7899
Q ss_pred hhhccCceecc
Q 000398 986 WTRVFGFTSLE 996 (1570)
Q Consensus 986 WT~KFGF~~I~ 996 (1570)
|. +.|++...
T Consensus 136 y~-~~g~~~~~ 145 (154)
T PHA00673 136 LP-AAGYRETN 145 (154)
T ss_pred HH-hCCchhhc
Confidence 99 78887654
No 34
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=97.99 E-value=3.9e-05 Score=75.91 Aligned_cols=86 Identities=13% Similarity=0.281 Sum_probs=67.5
Q ss_pred cEEEEEeeCCeEEEEEEEEeec----CceeEEeeeeeeccccccChhHHHHHHHHHHHhh-cCccEEEecch---hhHHH
Q 000398 913 FYTAILERGDEIISAASIRFHG----TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCS-LKVEKLIIPAI---AELMH 984 (1570)
Q Consensus 913 FYtaVLEk~geVVSaAsLRI~G----~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~s-LGVerLvLPA~---~ea~~ 984 (1570)
++.+|.+.++++||.+.+.... ...+|+- +++.++|||||+|+.|+..++..+.. +|..++++... ..+..
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 4556667889999999987532 2456664 89999999999999999999999888 79888776654 45667
Q ss_pred HhhhccCceeccHHHH
Q 000398 985 TWTRVFGFTSLEESLK 1000 (1570)
Q Consensus 985 tWT~KFGF~~I~~sek 1000 (1570)
++. ++||+......+
T Consensus 130 ~y~-k~GF~~~g~~~~ 144 (162)
T PRK10140 130 VYK-KYGFEIEGTGKK 144 (162)
T ss_pred HHH-HCCCEEEeeccc
Confidence 776 899998766433
No 35
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=97.98 E-value=2.8e-05 Score=85.33 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=68.8
Q ss_pred cccEEEEEeeCCeEEEEEEEEeecC--ceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchh---hHHHH
Q 000398 911 SGFYTAILERGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIA---ELMHT 985 (1570)
Q Consensus 911 rGFYtaVLEk~geVVSaAsLRI~G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~---ea~~t 985 (1570)
.++|.++...++++||.+.+++... .+++|-.++|.++|||||+|+.|+..+++.++..|+..|++...+ .++.+
T Consensus 198 ~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~ 277 (292)
T TIGR03448 198 AGLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRT 277 (292)
T ss_pred CceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 3555554323689999887776543 468888899999999999999999999999999999998876643 57888
Q ss_pred hhhccCceeccH
Q 000398 986 WTRVFGFTSLEE 997 (1570)
Q Consensus 986 WT~KFGF~~I~~ 997 (1570)
|. ++||+.+..
T Consensus 278 y~-k~GF~~~~~ 288 (292)
T TIGR03448 278 YE-KLGFTVAEV 288 (292)
T ss_pred HH-HcCCEEccc
Confidence 87 899998654
No 36
>PRK09831 putative acyltransferase; Provisional
Probab=97.92 E-value=2.9e-05 Score=77.58 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=59.4
Q ss_pred EEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceec
Q 000398 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1570)
Q Consensus 916 aVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I 995 (1570)
+|+..+|++||.+.+.. +.+..++|.++|||||+|+.||..+++.+.. |.+.+...++.++. ++||..+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~-k~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFE-RYGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHH-HCCCEEe
Confidence 34578899999988732 4577899999999999999999999998876 45556677889998 8999998
Q ss_pred cHH
Q 000398 996 EES 998 (1570)
Q Consensus 996 ~~s 998 (1570)
...
T Consensus 125 g~~ 127 (147)
T PRK09831 125 KQQ 127 (147)
T ss_pred ecc
Confidence 763
No 37
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=97.89 E-value=0.0001 Score=72.95 Aligned_cols=76 Identities=22% Similarity=0.336 Sum_probs=62.3
Q ss_pred eCCeEEEEEEEEeecC--ceeEEeeeeeeccccccChhHHHHHHHHHHH-hhcCccEEEecch---hhHHHHhhhccCce
Q 000398 920 RGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESAL-CSLKVEKLIIPAI---AELMHTWTRVFGFT 993 (1570)
Q Consensus 920 k~geVVSaAsLRI~G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L-~sLGVerLvLPA~---~ea~~tWT~KFGF~ 993 (1570)
.+|++||.+.++-... ..|++-++ +.+.||++|+|+.|+..|++.+ ..+|+++|.+-.. ..++.+|+ ++||+
T Consensus 58 ~~g~iiG~~~~~~~~~~~~~~~~~~~-v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~-~~GF~ 135 (155)
T PF13420_consen 58 EDGKIIGYVSLRDIDPYNHTAELSIY-VSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYK-KLGFE 135 (155)
T ss_dssp CTTEEEEEEEEEESSSGTTEEEEEEE-EEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHH-HTTEE
T ss_pred cCCcEEEEEEEEeeeccCCEEEEeeE-EChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHH-hCCCE
Confidence 5999999999985443 67787744 4499999999999999999999 9999999986444 45888998 89999
Q ss_pred eccH
Q 000398 994 SLEE 997 (1570)
Q Consensus 994 ~I~~ 997 (1570)
....
T Consensus 136 ~~g~ 139 (155)
T PF13420_consen 136 EEGE 139 (155)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 38
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=97.87 E-value=6.8e-05 Score=60.58 Aligned_cols=60 Identities=23% Similarity=0.256 Sum_probs=54.0
Q ss_pred EEeeCCeEEEEEEEEeec--CceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEe
Q 000398 917 ILERGDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLII 976 (1570)
Q Consensus 917 VLEk~geVVSaAsLRI~G--~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvL 976 (1570)
++..++++||.+.+.... ...++|-.++|.++|||+|+++.|+..+.+.+...|..++++
T Consensus 3 ~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 3 VAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 446789999999987765 488999999999999999999999999999999999999885
No 39
>PRK13688 hypothetical protein; Provisional
Probab=97.84 E-value=7.1e-05 Score=78.19 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=57.8
Q ss_pred EeeCCeEEEEEEEEee----------cCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhh
Q 000398 918 LERGDEIISAASIRFH----------GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1570)
Q Consensus 918 LEk~geVVSaAsLRI~----------G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT 987 (1570)
+..++++||++.+... ..+.++|--|+|.++|||||+|++||..+++. ++. +.+.+...+..+|.
T Consensus 50 ~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~~----~~~-~~~~~~~~a~~FY~ 124 (156)
T PRK13688 50 IYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKSF----QLP-IKTIARNKSKDFWL 124 (156)
T ss_pred EEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHh----CCe-EEEEeccchHHHHH
Confidence 3468899998887542 24678999999999999999999999876543 443 33445567889999
Q ss_pred hccCceeccHH
Q 000398 988 RVFGFTSLEES 998 (1570)
Q Consensus 988 ~KFGF~~I~~s 998 (1570)
++||..+...
T Consensus 125 -k~GF~~~~~~ 134 (156)
T PRK13688 125 -KLGFTPVEYK 134 (156)
T ss_pred -hCCCEEeEEe
Confidence 8999988753
No 40
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=97.84 E-value=7.2e-05 Score=76.66 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=64.2
Q ss_pred EEEEEe-eCCeEEEEEEEEe--ecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch---hhHHHHhh
Q 000398 914 YTAILE-RGDEIISAASIRF--HGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTWT 987 (1570)
Q Consensus 914 YtaVLE-k~geVVSaAsLRI--~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~---~ea~~tWT 987 (1570)
+++|.+ .++++||.+.+.. ...+.+.+-.|||.++|||||+|+.|+..+++.++..++.+|.+-.. ..+..+|.
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 445556 5779999886533 33366888999999999999999999999999999989888876543 45667776
Q ss_pred hccCceecc
Q 000398 988 RVFGFTSLE 996 (1570)
Q Consensus 988 ~KFGF~~I~ 996 (1570)
||||+...
T Consensus 120 -k~G~~~~~ 127 (157)
T TIGR02406 120 -ALARRRGV 127 (157)
T ss_pred -HhCcccCC
Confidence 89887643
No 41
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.83 E-value=6.7e-06 Score=100.93 Aligned_cols=44 Identities=36% Similarity=0.966 Sum_probs=37.9
Q ss_pred ccccceeccCC---CcEeeCCCCCc-cCCCcCCCCC--CCCCCCCCCCcc
Q 000398 718 DDTCGICGDGG---DLICCDGCPST-FHQSCLDIQM--LPPGDWHCPNCT 761 (1570)
Q Consensus 718 DD~C~VCGDGG---dLLcCDgCprA-FH~~CL~pp~--VPeGdW~Cp~C~ 761 (1570)
..-|.+|+... -||+||.|..+ ||.|||+|+. +|.+.|||++|.
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcch
Confidence 45688887543 49999999998 9999999975 899999999996
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.81 E-value=1.1e-05 Score=103.59 Aligned_cols=56 Identities=39% Similarity=1.018 Sum_probs=48.0
Q ss_pred ccccccceeccCC-----CcEeeCCCCCccCCCcCCCCCCCCCCCCCCCcc--------ccccCCCCCC
Q 000398 716 PNDDTCGICGDGG-----DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT--------CKFCGLAGED 771 (1570)
Q Consensus 716 ~NDD~C~VCGDGG-----dLLcCDgCprAFH~~CL~pp~VPeGdW~Cp~C~--------Ck~CG~~g~d 771 (1570)
..+..|.+|.++. ..++||.|.-++|+.|.+.+-+|+|.|.|..|. |.+|-..++.
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gA 285 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGA 285 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCc
Confidence 4577999998754 489999999999999999999999999999996 8888655543
No 43
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=97.80 E-value=6e-05 Score=75.82 Aligned_cols=76 Identities=14% Similarity=0.259 Sum_probs=62.2
Q ss_pred eEEEEEEEEe-ecCc----eeEEeeeeeeccccccChhHHHHHHHHHHHhhcCc-cEEEecchhh---HHHHhhhccCce
Q 000398 923 EIISAASIRF-HGTQ----LAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKV-EKLIIPAIAE---LMHTWTRVFGFT 993 (1570)
Q Consensus 923 eVVSaAsLRI-~G~d----lAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGV-erLvLPA~~e---a~~tWT~KFGF~ 993 (1570)
+++|....++ .+.. .++|-.|||.|+|||||+|++|+..+++.+..-+. +.++|-...+ |+.+|. ++||.
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~-~~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYR-KLGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHH-HcCCE
Confidence 5888888853 4432 79999999999999999999999999999999886 7877776654 667777 79999
Q ss_pred eccHHH
Q 000398 994 SLEESL 999 (1570)
Q Consensus 994 ~I~~se 999 (1570)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 987543
No 44
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.77 E-value=8.4e-06 Score=91.71 Aligned_cols=75 Identities=24% Similarity=0.437 Sum_probs=57.9
Q ss_pred cCCeecCCCCceeecceeeecc---CCccccccceeeccCCcccceeccccccccccccccCCcccccCCCCccccccce
Q 000398 647 RDGIHCGCCSKILTVSKFEIHA---GSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGI 723 (1570)
Q Consensus 647 ~dGI~CsCC~KvFSpSeFEaHA---Gsk~RrPYqNIyLedGrSLLqCqIqAWnkqe~sEk~Gf~~V~vdgdd~NDD~C~V 723 (1570)
...|+|.-|....||++.+..- +.-..-| |++.+ ...|.+
T Consensus 277 ~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~---------W~C~~----------------------------C~lC~I 319 (381)
T KOG1512|consen 277 NSWIVCKPCATRPHPYCVAMIPELVGQYKTYF---------WKCSS----------------------------CELCRI 319 (381)
T ss_pred ccceeecccccCCCCcchhcCHHHHhHHhhcc---------hhhcc----------------------------cHhhhc
Confidence 3579999999999999986543 2211112 22222 347999
Q ss_pred eccCC---CcEeeCCCCCccCCCcCCCCCCCCCCCCCC
Q 000398 724 CGDGG---DLICCDGCPSTFHQSCLDIQMLPPGDWHCP 758 (1570)
Q Consensus 724 CGDGG---dLLcCDgCprAFH~~CL~pp~VPeGdW~Cp 758 (1570)
|+.+. ++++||.|++.||.+|+++..+|.|.|.|.
T Consensus 320 C~~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD 357 (381)
T KOG1512|consen 320 CLGPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICD 357 (381)
T ss_pred cCCcccchheeccccccCCCCccccccccccCccchhh
Confidence 98754 699999999999999999999999999996
No 45
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.76 E-value=9.9e-05 Score=90.19 Aligned_cols=86 Identities=13% Similarity=0.116 Sum_probs=67.9
Q ss_pred cccEEEEEee--CCeEEEEEEEEee------cCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch---
Q 000398 911 SGFYTAILER--GDEIISAASIRFH------GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI--- 979 (1570)
Q Consensus 911 rGFYtaVLEk--~geVVSaAsLRI~------G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~--- 979 (1570)
.+++.+|.+. +|+|||.+.+..+ +...++|--|+|.++|||||+|+.||..+++.++..|+.+++|...
T Consensus 121 ~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N 200 (547)
T TIGR03103 121 RAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDN 200 (547)
T ss_pred CCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCC
Confidence 3444455553 6999999875322 2235788899999999999999999999999999999999876544
Q ss_pred hhHHHHhhhccCceeccH
Q 000398 980 AELMHTWTRVFGFTSLEE 997 (1570)
Q Consensus 980 ~ea~~tWT~KFGF~~I~~ 997 (1570)
..+..+|. ++||..++.
T Consensus 201 ~~Ai~fY~-klGf~~~~~ 217 (547)
T TIGR03103 201 EQAIALYE-KLGFRRIPV 217 (547)
T ss_pred HHHHHHHH-HCCCEEeeE
Confidence 56788887 899998874
No 46
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=97.71 E-value=2.4e-05 Score=83.27 Aligned_cols=82 Identities=29% Similarity=0.723 Sum_probs=58.6
Q ss_pred ccceecc------CCCcEeeCCCCCccCCCcCCCCC--------CCCC--CCCCCCcc---------------ccccCCC
Q 000398 720 TCGICGD------GGDLICCDGCPSTFHQSCLDIQM--------LPPG--DWHCPNCT---------------CKFCGLA 768 (1570)
Q Consensus 720 ~C~VCGD------GGdLLcCDgCprAFH~~CL~pp~--------VPeG--dW~Cp~C~---------------Ck~CG~~ 768 (1570)
+|.+|+. -|.|++|.+|..+||..||++-. |-.+ -.+|..|. |..|...
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 4777753 35699999999999999999742 2222 26788886 8888766
Q ss_pred CCCCC-------------------CCCCCC----------CCceecCCcchhhhhhhccccc
Q 000398 769 GEDDA-------------------EGDDTT----------TSALLPCAMCEKKYHKLCMQEM 801 (1570)
Q Consensus 769 g~dse-------------------eeD~~S----------v~~LL~CDQCERaYHv~CL~p~ 801 (1570)
+.... ..|+.. .+.|+.|..|.|+||...|++.
T Consensus 81 G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 81 GPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred CCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCC
Confidence 53211 112221 2578999999999999999974
No 47
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=97.68 E-value=0.00017 Score=79.24 Aligned_cols=80 Identities=16% Similarity=0.077 Sum_probs=62.5
Q ss_pred EEEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch-hhHHHHhhhccCce
Q 000398 915 TAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI-AELMHTWTRVFGFT 993 (1570)
Q Consensus 915 taVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~-~ea~~tWT~KFGF~ 993 (1570)
.+|...+++|||.+.+.......+++-.|+|.++|||||+|+.||..+++.+. +--.|++... ..+..++. ++||+
T Consensus 48 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~-~~Gf~ 124 (292)
T TIGR03448 48 HLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALAS-RLGLV 124 (292)
T ss_pred EEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHH-HCCCE
Confidence 44556789999999988775555788889999999999999999999999865 3334555543 45677776 89998
Q ss_pred eccH
Q 000398 994 SLEE 997 (1570)
Q Consensus 994 ~I~~ 997 (1570)
.+..
T Consensus 125 ~~~~ 128 (292)
T TIGR03448 125 PTRE 128 (292)
T ss_pred EccE
Confidence 8754
No 48
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.66 E-value=1e-05 Score=69.04 Aligned_cols=42 Identities=48% Similarity=1.270 Sum_probs=34.9
Q ss_pred ccceecc---CCCcEeeCCCCCccCCCcCCCCC----CCCCCCCCCCcc
Q 000398 720 TCGICGD---GGDLICCDGCPSTFHQSCLDIQM----LPPGDWHCPNCT 761 (1570)
Q Consensus 720 ~C~VCGD---GGdLLcCDgCprAFH~~CL~pp~----VPeGdW~Cp~C~ 761 (1570)
+|.+|+. .+++|.|+.|.+.||..|++++. .+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4778876 56799999999999999999864 344689999885
No 49
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.60 E-value=3.5e-05 Score=92.10 Aligned_cols=98 Identities=20% Similarity=0.425 Sum_probs=69.4
Q ss_pred cccceecc-----CCCcEeeCCCCCccCCCcCCCCCCCCCCCCCCCcc--------------------------------
Q 000398 719 DTCGICGD-----GGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT-------------------------------- 761 (1570)
Q Consensus 719 D~C~VCGD-----GGdLLcCDgCprAFH~~CL~pp~VPeGdW~Cp~C~-------------------------------- 761 (1570)
..|.+|.. +.++..|+.|.++||+.|.-+.....+.|.|..|.
T Consensus 84 ~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~wD~ 163 (464)
T KOG4323|consen 84 LNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLDWDS 163 (464)
T ss_pred cCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCcccccccCc
Confidence 35667754 33588899999999999998765556778887765
Q ss_pred -------ccccCCCCCCCCCCCCCCCCceecCCcchhhhhhhccccccccccCCCCCccceeCccchhhH
Q 000398 762 -------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELS 824 (1570)
Q Consensus 762 -------Ck~CG~~g~dseeeD~~Sv~~LL~CDQCERaYHv~CL~p~d~~pl~~~psg~WFCsqeCqeI~ 824 (1570)
|.+|+..... ..+.|++|+.|..+||..|.++.....+.-.+...|||. .|.+-.
T Consensus 164 ~~~~n~qc~vC~~g~~~-------~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~-~C~~~~ 225 (464)
T KOG4323|consen 164 GHKVNLQCSVCYCGGPG-------AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCD-VCNRGP 225 (464)
T ss_pred cccccceeeeeecCCcC-------ccceeeeecccccHHHHHhccCCCCHhhccCccceEeeh-hhccch
Confidence 4444332221 224799999999999999999865544444577899996 554433
No 51
>PRK01346 hypothetical protein; Provisional
Probab=97.60 E-value=0.00022 Score=82.90 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=65.6
Q ss_pred EEEeeCCeEEEEEEEEee------cC--ceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhh
Q 000398 916 AILERGDEIISAASIRFH------GT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1570)
Q Consensus 916 aVLEk~geVVSaAsLRI~------G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT 987 (1570)
++...+++|||.+.+..+ |. ..+.|-.|||.|+|||||+|++||..+++.++..|+..++|-+.. ..+|.
T Consensus 50 ~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y~ 127 (411)
T PRK01346 50 LGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIYG 127 (411)
T ss_pred EEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHh
Confidence 455688999999886432 32 578999999999999999999999999999999999988887654 35666
Q ss_pred hccCceeccH
Q 000398 988 RVFGFTSLEE 997 (1570)
Q Consensus 988 ~KFGF~~I~~ 997 (1570)
+|||.....
T Consensus 128 -r~Gf~~~~~ 136 (411)
T PRK01346 128 -RFGYGPATY 136 (411)
T ss_pred -hCCCeeccc
Confidence 899988765
No 52
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=97.58 E-value=0.0003 Score=74.82 Aligned_cols=92 Identities=13% Similarity=0.231 Sum_probs=71.3
Q ss_pred cEEEEEeeCCeEEEEEEEEeecC---ceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhh---HHHHh
Q 000398 913 FYTAILERGDEIISAASIRFHGT---QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE---LMHTW 986 (1570)
Q Consensus 913 FYtaVLEk~geVVSaAsLRI~G~---dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~e---a~~tW 986 (1570)
|..+.++.++..|||+....... .-++|--+||.++|||||||++|+..+.+.++..|...+||-.... |+..+
T Consensus 57 ~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY 136 (165)
T KOG3139|consen 57 FCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLY 136 (165)
T ss_pred EEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHH
Confidence 44554444443577776655333 3589999999999999999999999999999999999999988764 55666
Q ss_pred hhccCceeccHHHHHhhhc
Q 000398 987 TRVFGFTSLEESLKQEMRS 1005 (1570)
Q Consensus 987 T~KFGF~~I~~sek~~l~~ 1005 (1570)
. +|||.......+..+..
T Consensus 137 ~-sLGF~r~~r~~~YYlng 154 (165)
T KOG3139|consen 137 E-SLGFKRDKRLFRYYLNG 154 (165)
T ss_pred H-hcCceEecceeEEEECC
Confidence 6 89999987666655543
No 53
>PHA01807 hypothetical protein
Probab=97.55 E-value=0.00022 Score=74.65 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=57.2
Q ss_pred EEEEEeeCCeEEEEEEEEeecC----ceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhh---HHHHh
Q 000398 914 YTAILERGDEIISAASIRFHGT----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE---LMHTW 986 (1570)
Q Consensus 914 YtaVLEk~geVVSaAsLRI~G~----dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~e---a~~tW 986 (1570)
+.++++.++++||.+.+..... .+.+|--|.|.++|||+|+|+.||+++++.++..|+..|++-...+ |+.++
T Consensus 54 ~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y 133 (153)
T PHA01807 54 TELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHY 133 (153)
T ss_pred eEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHH
Confidence 3455677999999999854432 2333344689999999999999999999999999999998776655 44444
Q ss_pred h
Q 000398 987 T 987 (1570)
Q Consensus 987 T 987 (1570)
.
T Consensus 134 ~ 134 (153)
T PHA01807 134 R 134 (153)
T ss_pred H
Confidence 4
No 54
>PRK10562 putative acetyltransferase; Provisional
Probab=97.51 E-value=0.00034 Score=69.59 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=56.6
Q ss_pred EEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceec
Q 000398 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1570)
Q Consensus 916 aVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I 995 (1570)
+|+..++++||.+.+... ..+-.++|.++|||||+|+.||..+++.+..+.+ .+...-..+..+|. ++||+.+
T Consensus 51 ~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~-k~Gf~~~ 123 (145)
T PRK10562 51 WVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYH-AQGFRIV 123 (145)
T ss_pred EEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHH-HCCCEEc
Confidence 344567899999987422 4567799999999999999999999997654322 23344556778888 8999998
Q ss_pred cH
Q 000398 996 EE 997 (1570)
Q Consensus 996 ~~ 997 (1570)
..
T Consensus 124 ~~ 125 (145)
T PRK10562 124 DS 125 (145)
T ss_pred cc
Confidence 74
No 55
>PRK10514 putative acetyltransferase; Provisional
Probab=97.49 E-value=0.00044 Score=68.01 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=56.6
Q ss_pred EEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceecc
Q 000398 917 ILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1570)
Q Consensus 917 VLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I~ 996 (1570)
+++.++++||.+.+.- .++-.++|.++|||||+|++|++.+++.+.. +...+.+.-..+..+|. |+||+.+.
T Consensus 54 ~~~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~ye-k~Gf~~~~ 125 (145)
T PRK10514 54 AVDERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYK-KMGFKVTG 125 (145)
T ss_pred EEecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHH-HCCCEEec
Confidence 3356789999888742 3455799999999999999999999997643 34444555567888997 89999976
Q ss_pred H
Q 000398 997 E 997 (1570)
Q Consensus 997 ~ 997 (1570)
.
T Consensus 126 ~ 126 (145)
T PRK10514 126 R 126 (145)
T ss_pred c
Confidence 5
No 56
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.48 E-value=0.0003 Score=73.27 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=88.0
Q ss_pred cccccchhhHhHhhhhhccCccccCCCCCccccceeeccCCCCCcccccc-cEEEEEe--eCCeEEEEEEEEe-----ec
Q 000398 863 RVECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSG-FYTAILE--RGDEIISAASIRF-----HG 934 (1570)
Q Consensus 863 ~vEcnSKLAvALtIMhECFdPIVD~rSGrDLIpdMVYNrGSnFkRLnfrG-FYtaVLE--k~geVVSaAsLRI-----~G 934 (1570)
.+++-..|...-.|-+|.|.-.++. |- .+.. +|.+|+| ..++||++|+|-| ||
T Consensus 21 f~elL~qLT~vG~vt~e~F~krf~~---------mk----------~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~ 81 (150)
T KOG3396|consen 21 FIELLKQLTSVGVVTREQFEKRFEA---------MK----------KSGDWYYIVVIEDKESEKVIGTATLFIERKFIHG 81 (150)
T ss_pred HHHHHHHHhhccccCHHHHHHHHHH---------HH----------hcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhc
Confidence 3555666776667777777744331 10 1122 6888888 4589999999965 33
Q ss_pred C-ceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceecc
Q 000398 935 T-QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1570)
Q Consensus 935 ~-dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I~ 996 (1570)
. .-..|-=|+|.++||||++|+.|+..+-.+..+||+=++.|.-.++.+.||. ||||+...
T Consensus 82 ~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~FYe-KcG~s~~~ 143 (150)
T KOG3396|consen 82 CGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVKFYE-KCGYSNAG 143 (150)
T ss_pred ccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhhHHH-HcCccccc
Confidence 2 2234566899999999999999999999999999999999999999999999 89998765
No 57
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.48 E-value=7.5e-05 Score=91.19 Aligned_cols=44 Identities=41% Similarity=1.151 Sum_probs=37.5
Q ss_pred ccccceeccCCCcEeeCCCCCccCCCcCCCCC---CCCCCCCCCCcc
Q 000398 718 DDTCGICGDGGDLICCDGCPSTFHQSCLDIQM---LPPGDWHCPNCT 761 (1570)
Q Consensus 718 DD~C~VCGDGGdLLcCDgCprAFH~~CL~pp~---VPeGdW~Cp~C~ 761 (1570)
-..|.+|..+|+++||+.|+.+||..|.+++. ++.+.|.|..|.
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~ 93 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCP 93 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCC
Confidence 46899999999999999999999999999754 444678888875
No 58
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.47 E-value=4.4e-05 Score=86.31 Aligned_cols=45 Identities=38% Similarity=0.981 Sum_probs=39.6
Q ss_pred ccccccceeccCCCcEeeCC--CC-CccCCCcCCCCCCCCCCCCCCCcc
Q 000398 716 PNDDTCGICGDGGDLICCDG--CP-STFHQSCLDIQMLPPGDWHCPNCT 761 (1570)
Q Consensus 716 ~NDD~C~VCGDGGdLLcCDg--Cp-rAFH~~CL~pp~VPeGdW~Cp~C~ 761 (1570)
+...+|- |...|+++-||. |+ .+||..|+++...|.|.|||+.|+
T Consensus 219 ~~yC~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~ 266 (274)
T KOG1973|consen 219 PTYCICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCK 266 (274)
T ss_pred CEEEEec-ccccccccccCCCCCCcceEEEeccccccCCCCcccchhhh
Confidence 3445666 778899999998 99 999999999999999999999886
No 59
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.47 E-value=0.00067 Score=70.02 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=64.8
Q ss_pred EEEEeeCCeEEEEEEEEeec--CceeEEeeeeeeccccccChhHHHHHHHHHHHh-hcCccEEEecchh---hHHHHhhh
Q 000398 915 TAILERGDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESALC-SLKVEKLIIPAIA---ELMHTWTR 988 (1570)
Q Consensus 915 taVLEk~geVVSaAsLRI~G--~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~-sLGVerLvLPA~~---ea~~tWT~ 988 (1570)
.++++.++++||.+.+.... ...+++- +++.++|||+|+|+.|+..+.+.+. .+|+.+|++-... .++.++.
T Consensus 59 ~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~ye- 136 (186)
T PRK15130 59 RFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR- 136 (186)
T ss_pred EEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHH-
Confidence 44556799999999886543 2467774 8999999999999999999998765 6999999886543 5677777
Q ss_pred ccCceeccH
Q 000398 989 VFGFTSLEE 997 (1570)
Q Consensus 989 KFGF~~I~~ 997 (1570)
++||+.+..
T Consensus 137 k~GF~~~~~ 145 (186)
T PRK15130 137 KLGFEVEGE 145 (186)
T ss_pred HCCCEEEEE
Confidence 899998765
No 60
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.46 E-value=0.00089 Score=64.79 Aligned_cols=73 Identities=19% Similarity=0.183 Sum_probs=57.6
Q ss_pred eCCeEEEEEEEEee--cCceeEEeeeeeeccccccChhHHHHHHHHHHH-hhcCccEEEecchhhHHHHhh--hccCce
Q 000398 920 RGDEIISAASIRFH--GTQLAEMPFIGTRHIYRRQGMCRRLFCALESAL-CSLKVEKLIIPAIAELMHTWT--RVFGFT 993 (1570)
Q Consensus 920 k~geVVSaAsLRI~--G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L-~sLGVerLvLPA~~ea~~tWT--~KFGF~ 993 (1570)
.++++||...++.. ....|||- +.+.++|||+|+|..++..+...+ ..+|+.+|++...++-...-. .|+||+
T Consensus 65 ~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 65 DDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred cCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 34589999999443 46889999 669999999999999999999998 799999999877765443322 488885
No 61
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.45 E-value=0.00046 Score=78.65 Aligned_cols=81 Identities=11% Similarity=0.013 Sum_probs=67.7
Q ss_pred cEEEEEee---CCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch-----hhHHH
Q 000398 913 FYTAILER---GDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI-----AELMH 984 (1570)
Q Consensus 913 FYtaVLEk---~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~-----~ea~~ 984 (1570)
.|++.+.. ++.+||.+.++.. ...++|-.+++++.|||+|+|+.||.++++.++..|+.+|++-.. ..|..
T Consensus 231 ~~~~~~~d~~gd~givG~~~~~~~-~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~ 309 (320)
T TIGR01686 231 IVTVSMSDRFGDSGIIGIFVFEKK-EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLS 309 (320)
T ss_pred EEEEEEEecCCCCceEEEEEEEec-CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHH
Confidence 45555543 6789999998764 456899999999999999999999999999999999999988553 46888
Q ss_pred HhhhccCceec
Q 000398 985 TWTRVFGFTSL 995 (1570)
Q Consensus 985 tWT~KFGF~~I 995 (1570)
+|. ++||...
T Consensus 310 fY~-~~GF~~~ 319 (320)
T TIGR01686 310 FYE-QIGFEDE 319 (320)
T ss_pred HHH-HcCCccC
Confidence 997 8999854
No 62
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.43 E-value=3.6e-05 Score=94.75 Aligned_cols=86 Identities=28% Similarity=0.677 Sum_probs=61.8
Q ss_pred ccccccceeccC-----CCcEeeCCCCCccCCCcCCCCCCCCCCCCCCCcc------ccccCCCCCCCCCCCCCCCCcee
Q 000398 716 PNDDTCGICGDG-----GDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT------CKFCGLAGEDDAEGDDTTTSALL 784 (1570)
Q Consensus 716 ~NDD~C~VCGDG-----GdLLcCDgCprAFH~~CL~pp~VPeGdW~Cp~C~------Ck~CG~~g~dseeeD~~Sv~~LL 784 (1570)
+++..|-+|..+ .+|++||.|.-..|+.|.++..+|+|.|.|..|. |.+|-..++.-......+.+..+
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAHv 348 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAHV 348 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeeeEe
Confidence 467789999754 4699999999999999999999999999999997 88887776643322222334455
Q ss_pred cCCcchhhhhhhccccc
Q 000398 785 PCAMCEKKYHKLCMQEM 801 (1570)
Q Consensus 785 ~CDQCERaYHv~CL~p~ 801 (1570)
.|...--..-+.|...+
T Consensus 349 sCALwIPEVsie~~ekm 365 (893)
T KOG0954|consen 349 SCALWIPEVSIECPEKM 365 (893)
T ss_pred eeeeccceeeccCHhhc
Confidence 55554444445555443
No 63
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.38 E-value=0.0013 Score=65.60 Aligned_cols=88 Identities=18% Similarity=0.196 Sum_probs=65.5
Q ss_pred ccccEEEEEeeCCeEEEEEEEEe------ecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhc-CccEEEecchhhH
Q 000398 910 YSGFYTAILERGDEIISAASIRF------HGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSL-KVEKLIIPAIAEL 982 (1570)
Q Consensus 910 frGFYtaVLEk~geVVSaAsLRI------~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sL-GVerLvLPA~~ea 982 (1570)
-.+++.+|...+|++||.+.+.- .....+.+-.+++.++|||||+|+.++.++.+.+..- ++++|++....+-
T Consensus 45 ~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N 124 (152)
T PF13523_consen 45 DPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDN 124 (152)
T ss_dssp TTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-
T ss_pred cCCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCC
Confidence 35667888899999999887732 1345677889999999999999999999998887765 8999999887754
Q ss_pred HHHhh--hccCceeccH
Q 000398 983 MHTWT--RVFGFTSLEE 997 (1570)
Q Consensus 983 ~~tWT--~KFGF~~I~~ 997 (1570)
..++. .|+||+.+..
T Consensus 125 ~~~~~~~~k~GF~~~g~ 141 (152)
T PF13523_consen 125 TRAIRLYEKAGFRKVGE 141 (152)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHcCCEEeeE
Confidence 44443 3899998764
No 64
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.33 E-value=5.1e-05 Score=94.53 Aligned_cols=49 Identities=49% Similarity=1.298 Sum_probs=42.4
Q ss_pred CCccccccceeccCCCcEeeCCCCCccCCCcCCCCC--CCCCCCCCCCccc
Q 000398 714 DDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCTC 762 (1570)
Q Consensus 714 dd~NDD~C~VCGDGGdLLcCDgCprAFH~~CL~pp~--VPeGdW~Cp~C~C 762 (1570)
++.+...|.+|+++|++|+|+.|+.+||.+|++++. .|.++|.|+.|.|
T Consensus 43 ~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~ 93 (696)
T KOG0383|consen 43 DDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFC 93 (696)
T ss_pred chhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeecc
Confidence 355677999999999999999999999999999875 5668899997754
No 65
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.32 E-value=0.001 Score=63.15 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=55.2
Q ss_pred CCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEe-cch-hhHHHHhhhccCceeccH
Q 000398 921 GDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLII-PAI-AELMHTWTRVFGFTSLEE 997 (1570)
Q Consensus 921 ~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvL-PA~-~ea~~tWT~KFGF~~I~~ 997 (1570)
+++.+..++..+.... ++|-.|.|.|+|||+|+|+.|+.+|.+.+..-|..-++. ... ..+..++. ++||+.+..
T Consensus 6 ~~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~-klGf~~~~~ 82 (86)
T PF08445_consen 6 DGELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYE-KLGFREIEE 82 (86)
T ss_dssp CTCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHH-HCT-EEEEE
T ss_pred ECCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH-HcCCEEEEE
Confidence 3455566666555555 999999999999999999999999999988887765433 233 34667777 899998753
No 66
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.29 E-value=0.0018 Score=64.23 Aligned_cols=79 Identities=16% Similarity=0.118 Sum_probs=62.3
Q ss_pred EEeeCCeEEEEEEEEeec--CceeEEeeeeeeccccccChhHHHHHHHHHHHh-hcCccEEEecch---hhHHHHhhhcc
Q 000398 917 ILERGDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESALC-SLKVEKLIIPAI---AELMHTWTRVF 990 (1570)
Q Consensus 917 VLEk~geVVSaAsLRI~G--~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~-sLGVerLvLPA~---~ea~~tWT~KF 990 (1570)
++..+|++||.+.+.... ...+++-+. +.+.|| ||+|+.|+.++++.+. .+++.+|++... ..++.++. ++
T Consensus 55 ~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~-k~ 131 (156)
T TIGR03585 55 IVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYE-KF 131 (156)
T ss_pred EEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHH-Hc
Confidence 346789999999997655 356777655 889999 9999999999999976 589999987544 34566666 89
Q ss_pred CceeccHH
Q 000398 991 GFTSLEES 998 (1570)
Q Consensus 991 GF~~I~~s 998 (1570)
||+.+...
T Consensus 132 Gf~~~g~~ 139 (156)
T TIGR03585 132 GFEREGVF 139 (156)
T ss_pred CCeEeeee
Confidence 99987753
No 67
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.25 E-value=0.0012 Score=68.85 Aligned_cols=83 Identities=11% Similarity=0.111 Sum_probs=63.3
Q ss_pred cEEEEEeeCCeEEEEEEEEeecC---ceeEEeeeeeeccccccChhHHHHHHHHHHHhh-cCccEEEecchhhHH---HH
Q 000398 913 FYTAILERGDEIISAASIRFHGT---QLAEMPFIGTRHIYRRQGMCRRLFCALESALCS-LKVEKLIIPAIAELM---HT 985 (1570)
Q Consensus 913 FYtaVLEk~geVVSaAsLRI~G~---dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~s-LGVerLvLPA~~ea~---~t 985 (1570)
+|.+++..++++||.+.|..+.. ..|||= +.+.++|||||+|+.++.++.+.+.. +|+.+|++...+.-. .+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 45555555789999999875532 345654 56899999999999999999999865 899999988876533 44
Q ss_pred hhhccCceeccH
Q 000398 986 WTRVFGFTSLEE 997 (1570)
Q Consensus 986 WT~KFGF~~I~~ 997 (1570)
. .|+||+....
T Consensus 156 ~-ek~Gf~~~g~ 166 (194)
T PRK10809 156 L-ARLGFEKEGY 166 (194)
T ss_pred H-HHCCCcEEee
Confidence 4 4899997543
No 68
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.22 E-value=0.00081 Score=82.29 Aligned_cols=78 Identities=18% Similarity=0.280 Sum_probs=66.1
Q ss_pred eeCCeEEEEEEEEeecCcee-----------EEeeeee--------eccccccChhHHHHHHHHHHHhhcCccEEEecch
Q 000398 919 ERGDEIISAASIRFHGTQLA-----------EMPFIGT--------RHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI 979 (1570)
Q Consensus 919 Ek~geVVSaAsLRI~G~dlA-----------EmPlVAT--------r~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~ 979 (1570)
..++.+||-..||+...+.. ||-..++ .++|||||+|+.||+++|+.++..|++.|+|.+-
T Consensus 420 ~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~ 499 (522)
T TIGR01211 420 PKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISG 499 (522)
T ss_pred CCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeC
Confidence 46679999999998765433 6666655 5899999999999999999999999999999888
Q ss_pred hhHHHHhhhccCceeccH
Q 000398 980 AELMHTWTRVFGFTSLEE 997 (1570)
Q Consensus 980 ~ea~~tWT~KFGF~~I~~ 997 (1570)
..+..+|. ++||....+
T Consensus 500 ~~A~~FY~-klGf~~~g~ 516 (522)
T TIGR01211 500 IGVREYYR-KLGYELDGP 516 (522)
T ss_pred chHHHHHH-HCCCEEEcc
Confidence 88999999 899987654
No 69
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.18 E-value=0.0011 Score=75.04 Aligned_cols=83 Identities=20% Similarity=0.249 Sum_probs=67.2
Q ss_pred cEEEEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHH-HhhcCccEEEecchh-hHHHHhhhcc
Q 000398 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESA-LCSLKVEKLIIPAIA-ELMHTWTRVF 990 (1570)
Q Consensus 913 FYtaVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~-L~sLGVerLvLPA~~-ea~~tWT~KF 990 (1570)
+.++.++.+|+||+.|...-.+...|+|-.|.|.|+|||+||..+||.++-.. |..=...-||+.++. -|-.+|. +.
T Consensus 177 ~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~-ri 255 (268)
T COG3393 177 SRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQ-RI 255 (268)
T ss_pred eeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHH-Hh
Confidence 34455567779999999999999999999999999999999999999988665 555556667776554 4556776 89
Q ss_pred Cceecc
Q 000398 991 GFTSLE 996 (1570)
Q Consensus 991 GF~~I~ 996 (1570)
||+.+-
T Consensus 256 GF~~~g 261 (268)
T COG3393 256 GFREIG 261 (268)
T ss_pred CCeecc
Confidence 999865
No 70
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.06 E-value=0.0032 Score=64.68 Aligned_cols=77 Identities=18% Similarity=0.124 Sum_probs=60.6
Q ss_pred eeCCeEEEEEEEEeecC--ceeEEeeeeeeccccccChhHHHHHHHHHHHh-hcCccEEEecchhh---HHHHhhhccCc
Q 000398 919 ERGDEIISAASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALC-SLKVEKLIIPAIAE---LMHTWTRVFGF 992 (1570)
Q Consensus 919 Ek~geVVSaAsLRI~G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~-sLGVerLvLPA~~e---a~~tWT~KFGF 992 (1570)
..++++||.+.++.+.. ..|||=+ .+.++|||||+|+.++.++.+.+. .+|+.+|.+-.... +..++. |+||
T Consensus 73 ~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~e-k~Gf 150 (179)
T PRK10151 73 FKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVAL-RNGF 150 (179)
T ss_pred EECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHH-HCCC
Confidence 45899999999876533 5688854 689999999999999999888775 58899998765544 445554 8999
Q ss_pred eeccH
Q 000398 993 TSLEE 997 (1570)
Q Consensus 993 ~~I~~ 997 (1570)
+....
T Consensus 151 ~~~g~ 155 (179)
T PRK10151 151 TLEGC 155 (179)
T ss_pred EEEeE
Confidence 97654
No 71
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.02 E-value=0.0029 Score=67.90 Aligned_cols=111 Identities=18% Similarity=0.197 Sum_probs=80.5
Q ss_pred cccccEEEEEeeC-CeEEEEEEEEeecC-----ceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhh-
Q 000398 909 NYSGFYTAILERG-DEIISAASIRFHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAE- 981 (1570)
Q Consensus 909 nfrGFYtaVLEk~-geVVSaAsLRI~G~-----dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~e- 981 (1570)
.=.|||.+|++.+ |+|++-|++.-|.. .++|. .|=+++.+||+|+|+.|+.++...+..+||..|+-.-..+
T Consensus 48 ~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n 126 (169)
T COG1247 48 TRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDN 126 (169)
T ss_pred ccCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCC
Confidence 3356899988766 99999888877665 55565 4568999999999999999999999999998877333222
Q ss_pred -HHHHhhhccCceeccHHHHHhhhccceEeecCccceeecccc
Q 000398 982 -LMHTWTRVFGFTSLEESLKQEMRSLNMLVFPGIDMLQKLLLE 1023 (1570)
Q Consensus 982 -a~~tWT~KFGF~~I~~sek~~l~~~~ll~FpGTsmLQK~L~~ 1023 (1570)
+--....+|||..+-....- ....=.|=.+.+||+.|.+
T Consensus 127 ~aSi~lh~~~GF~~~G~~~~v---g~k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 127 LASIALHEKLGFEEVGTFPEV---GDKFGRWLDLVLMQLLLEE 166 (169)
T ss_pred cHhHHHHHHCCCEEecccccc---ccccceEEeeeeeehhhcc
Confidence 33344469999998763322 2233445567788888854
No 72
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.99 E-value=0.00055 Score=85.68 Aligned_cols=69 Identities=32% Similarity=0.815 Sum_probs=51.6
Q ss_pred CCCCccCCCcCCCCC--CCCCCCCCCCcc--------------------ccccCCCCCCCCCCCCCCCCceecCCcchhh
Q 000398 735 GCPSTFHQSCLDIQM--LPPGDWHCPNCT--------------------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKK 792 (1570)
Q Consensus 735 gCprAFH~~CL~pp~--VPeGdW~Cp~C~--------------------Ck~CG~~g~dseeeD~~Sv~~LL~CDQCERa 792 (1570)
.|++.||..|+++.. -|+++|.|+.|. |.+|+..+ .++.|+.|..+
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~g------------~~l~c~tC~~s 68 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICADGG------------ELLWCDTCPAS 68 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccCCcchhhhhhhhhhcCCC------------cEEEeccccHH
Confidence 499999999999753 457999999885 55555433 37889999999
Q ss_pred hhhhccccccccccCCCCCccceeCccc
Q 000398 793 YHKLCMQEMDALSDNLTGLVTSFCGRKC 820 (1570)
Q Consensus 793 YHv~CL~p~d~~pl~~~psg~WFCsqeC 820 (1570)
||..|+.+ +....+.+.|.|. .|
T Consensus 69 ~h~~cl~~----pl~~~p~~~~~c~-Rc 91 (696)
T KOG0383|consen 69 FHASCLGP----PLTPQPNGEFICP-RC 91 (696)
T ss_pred HHHHccCC----CCCcCCccceeee-ee
Confidence 99999975 2222344459987 66
No 73
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=96.99 E-value=0.0027 Score=67.05 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=66.9
Q ss_pred EEEEeeCCeEEEEEEEEeecCceeE--EeeeeeeccccccChhHHHHHHHHHHHhhcC-ccEEEecchhhHHHHhhhccC
Q 000398 915 TAILERGDEIISAASIRFHGTQLAE--MPFIGTRHIYRRQGMCRRLFCALESALCSLK-VEKLIIPAIAELMHTWTRVFG 991 (1570)
Q Consensus 915 taVLEk~geVVSaAsLRI~G~dlAE--mPlVATr~~yRrQGmgR~Lv~aIE~~L~sLG-VerLvLPA~~ea~~tWT~KFG 991 (1570)
-++.+.+|++|++|.|---+....+ |=-|+|.+++||+|+|+.||....+.+.... =+-|.|.|-.-+..++. .||
T Consensus 52 l~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa-~~G 130 (155)
T COG2153 52 LLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYA-SFG 130 (155)
T ss_pred EEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHH-HhC
Confidence 3344559999988877555555555 6678999999999999999988777776665 56689999999999999 799
Q ss_pred ceeccH
Q 000398 992 FTSLEE 997 (1570)
Q Consensus 992 F~~I~~ 997 (1570)
|.++.+
T Consensus 131 Fv~~~e 136 (155)
T COG2153 131 FVRVGE 136 (155)
T ss_pred cEEcCc
Confidence 999987
No 74
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.90 E-value=0.00049 Score=77.30 Aligned_cols=44 Identities=34% Similarity=1.044 Sum_probs=37.4
Q ss_pred cccccceecc--CCCcEeeCC--CCC-ccCCCcCCCCCCCCCCCCCCCcc
Q 000398 717 NDDTCGICGD--GGDLICCDG--CPS-TFHQSCLDIQMLPPGDWHCPNCT 761 (1570)
Q Consensus 717 NDD~C~VCGD--GGdLLcCDg--Cpr-AFH~~CL~pp~VPeGdW~Cp~C~ 761 (1570)
....| -|.. -|+|+-||+ |.+ +||..|+++...|.|.|||+.|+
T Consensus 220 e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk 268 (271)
T COG5034 220 EELYC-FCQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECK 268 (271)
T ss_pred ceeEE-EecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhH
Confidence 34566 5765 579999996 987 99999999999999999999996
No 75
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=96.59 E-value=0.0096 Score=64.16 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=88.5
Q ss_pred ccccchhhHhHhhhhhccCccccCCCCCccccceeeccCCCCCcccccccEEEEEeeCCeEEEEEEEEe--ec-C--cee
Q 000398 864 VECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILERGDEIISAASIRF--HG-T--QLA 938 (1570)
Q Consensus 864 vEcnSKLAvALtIMhECFdPIVD~rSGrDLIpdMVYNrGSnFkRLnfrGFYtaVLEk~geVVSaAsLRI--~G-~--dlA 938 (1570)
.|+.........+.++.|.|-.. ..++...- .-.++++.= ..|-+.+|+||+...+-= +| . .+.
T Consensus 8 ~e~~~d~~~i~~~~~~aF~~~~e----~~~v~~lR-----~~~~~~~~L--slVA~d~g~vvG~Il~s~v~~~g~~~~~~ 76 (171)
T COG3153 8 TETPADIPAIEALTREAFGPGRE----AKLVDKLR-----EGGRPDLTL--SLVAEDDGEVVGHILFSPVTVGGEELGWL 76 (171)
T ss_pred ecChhhHHHHHHHHHHHhhcchH----HHHHHHHH-----hcCCcccce--eEEEeeCCEEEEEEEEeEEEecCcccceE
Confidence 34444455556677788874322 23332221 111112221 334467799998665421 22 2 444
Q ss_pred EEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceeccHHHHHhhhccceEe---ecCcc
Q 000398 939 EMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLEESLKQEMRSLNMLV---FPGID 1015 (1570)
Q Consensus 939 EmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I~~sek~~l~~~~ll~---FpGTs 1015 (1570)
=|=-+||.++||+||+|++||...++.|+.+|...+++-..+. +-.+|||..... +.+.. +|.+.
T Consensus 77 ~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp~----YY~rfGF~~~~~--------~~l~~p~~~~~~~ 144 (171)
T COG3153 77 GLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDPT----YYSRFGFEPAAG--------AKLYAPGPVPDER 144 (171)
T ss_pred EEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCcc----cccccCcEEccc--------cccccCCCCCCce
Confidence 5566899999999999999999999999999999999777653 336999998765 22222 57778
Q ss_pred ceeecccc
Q 000398 1016 MLQKLLLE 1023 (1570)
Q Consensus 1016 mLQK~L~~ 1023 (1570)
+|-+.|..
T Consensus 145 fl~~~L~~ 152 (171)
T COG3153 145 FLALELGD 152 (171)
T ss_pred EEEEEccC
Confidence 88888753
No 76
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=96.21 E-value=0.0078 Score=66.06 Aligned_cols=71 Identities=24% Similarity=0.262 Sum_probs=44.1
Q ss_pred eEEeeeeeeccccccChhHHHHHHHHHHH-------------------------hhcCccEEEe--cchhhHHHHhhhcc
Q 000398 938 AEMPFIGTRHIYRRQGMCRRLFCALESAL-------------------------CSLKVEKLII--PAIAELMHTWTRVF 990 (1570)
Q Consensus 938 AEmPlVATr~~yRrQGmgR~Lv~aIE~~L-------------------------~sLGVerLvL--PA~~ea~~tWT~KF 990 (1570)
+.|--|||.|++||+|||++|++.+++.+ +.-+|..|=. =+.++++.||+ |.
T Consensus 91 ~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~-k~ 169 (196)
T PF13718_consen 91 ARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQ-KN 169 (196)
T ss_dssp EEEEEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHH-CT
T ss_pred eeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHH-HC
Confidence 33445799999999999999999999999 4667776543 36789999999 79
Q ss_pred CceeccH-HHHHhhh-ccceE
Q 000398 991 GFTSLEE-SLKQEMR-SLNML 1009 (1570)
Q Consensus 991 GF~~I~~-sek~~l~-~~~ll 1009 (1570)
||.+|-- ..+.... .|.++
T Consensus 170 gf~pv~l~~~~n~~SGe~S~i 190 (196)
T PF13718_consen 170 GFVPVYLGQTRNEASGEHSAI 190 (196)
T ss_dssp T-EEEEE-SS--TTT---EEE
T ss_pred CcEEEEEecCcccccCceeee
Confidence 9999874 3333333 35443
No 77
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.09 E-value=0.011 Score=58.03 Aligned_cols=75 Identities=20% Similarity=0.182 Sum_probs=58.4
Q ss_pred EEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHH--hhhccCcee
Q 000398 917 ILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHT--WTRVFGFTS 994 (1570)
Q Consensus 917 VLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~t--WT~KFGF~~ 994 (1570)
||...|.+||=... .+.+||+...|.|+|||||+.+.++....+.|..+|+.-- +..+.+-..+ -...+||..
T Consensus 3 llgpeG~PVSW~lm----dqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y-~hv~~~N~~~~r~~~~lg~~~ 77 (89)
T PF08444_consen 3 LLGPEGNPVSWSLM----DQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFY-GHVDEDNEASQRLSKSLGFIF 77 (89)
T ss_pred ccCCCCCEeEEEEe----cccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeE-eehHhccHHHHHHHHHCCCee
Confidence 56778888886554 6789999999999999999999999999999999999853 3344333322 234788887
Q ss_pred cc
Q 000398 995 LE 996 (1570)
Q Consensus 995 I~ 996 (1570)
++
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 76
No 78
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.02 E-value=0.004 Score=65.80 Aligned_cols=30 Identities=40% Similarity=0.991 Sum_probs=25.0
Q ss_pred ccCCCcCCCCC--CCCCCCCCCCccccccCCC
Q 000398 739 TFHQSCLDIQM--LPPGDWHCPNCTCKFCGLA 768 (1570)
Q Consensus 739 AFH~~CL~pp~--VPeGdW~Cp~C~Ck~CG~~ 768 (1570)
.||++||.||. +|+|+|+||.|.....+..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~ 32 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQS 32 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCCc
Confidence 59999999975 8999999999987655443
No 79
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=95.98 E-value=0.034 Score=57.79 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=58.7
Q ss_pred cccEEEEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch------hhHHH
Q 000398 911 SGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI------AELMH 984 (1570)
Q Consensus 911 rGFYtaVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~------~ea~~ 984 (1570)
.-+|++ ..|+.++||+.+.+.|. -++|--+.||+.-||.|+|..|++.+.+.+ -+|...++.+. ..++.
T Consensus 38 ~~l~aA--rFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~~ 112 (128)
T PF12568_consen 38 HRLFAA--RFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVMA 112 (128)
T ss_dssp EEEEEE--EETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHH
T ss_pred CeEEEE--EechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCCcccchHHHH
Confidence 346777 79999999999999776 599999999999999999999999999998 55566555544 24455
Q ss_pred HhhhccCceecc
Q 000398 985 TWTRVFGFTSLE 996 (1570)
Q Consensus 985 tWT~KFGF~~I~ 996 (1570)
.....+||+..+
T Consensus 113 ~Fm~a~GF~~~~ 124 (128)
T PF12568_consen 113 AFMQACGFSAQS 124 (128)
T ss_dssp HHHHHHT-EE-S
T ss_pred HHHHHcCccccC
Confidence 555689997654
No 80
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=95.91 E-value=0.0023 Score=54.79 Aligned_cols=48 Identities=21% Similarity=0.708 Sum_probs=31.9
Q ss_pred ccccCCCCCCCCCCCCCCCCceecCCcchhhhhhhccccccccccCCCCCccceeCccch
Q 000398 762 CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1570)
Q Consensus 762 Ck~CG~~g~dseeeD~~Sv~~LL~CDQCERaYHv~CL~p~d~~pl~~~psg~WFCsqeCq 821 (1570)
|.+|+.... ...++.|+.|.++||..|+.+...... .+...|+|+ .|.
T Consensus 2 C~vC~~~~~---------~~~~i~C~~C~~~~H~~C~~~~~~~~~--~~~~~w~C~-~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDD---------DGDMIQCDSCNRWYHQECVGPPEKAEE--IPSGDWYCP-NCR 49 (51)
T ss_dssp BTTTTSSCT---------TSSEEEBSTTSCEEETTTSTSSHSHHS--HHSSSBSSH-HHH
T ss_pred CcCCCCcCC---------CCCeEEcCCCChhhCcccCCCChhhcc--CCCCcEECc-CCc
Confidence 567776332 245999999999999999997432111 122389984 554
No 81
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.69 E-value=0.0038 Score=77.95 Aligned_cols=52 Identities=25% Similarity=0.672 Sum_probs=39.6
Q ss_pred CCccccccCCCCCCCCCCCCCCCCceecCCcchhh-hhhhccccccccccCCCCCccceeCccchhh
Q 000398 758 PNCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKK-YHKLCMQEMDALSDNLTGLVTSFCGRKCQEL 823 (1570)
Q Consensus 758 p~C~Ck~CG~~g~dseeeD~~Sv~~LL~CDQCERa-YHv~CL~p~d~~pl~~~psg~WFCsqeCqeI 823 (1570)
..|.|.+|+..... ..|++|+.|... ||.+||.+ ++...+-..||| ..|..+
T Consensus 214 E~~~C~IC~~~DpE---------dVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~dL 266 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPE---------DVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSLL 266 (1134)
T ss_pred ccccceeeccCChH---------HhheeecccccceeeccccCc----ccccccccceec-Ccchhh
Confidence 45789999887653 249999999988 99999996 233446688999 588743
No 83
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=95.67 E-value=0.0036 Score=71.15 Aligned_cols=34 Identities=18% Similarity=0.544 Sum_probs=27.0
Q ss_pred CceecCCc--ch-hhhhhhccccccccccCCCCCccceeCccch
Q 000398 781 SALLPCAM--CE-KKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1570)
Q Consensus 781 ~~LL~CDQ--CE-RaYHv~CL~p~d~~pl~~~psg~WFCsqeCq 821 (1570)
+.|+.||. |+ .|||..|+.-. ..|.+.|||+ .|.
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CVGL~------~~PkgkWyC~-~C~ 266 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCVGLK------TKPKGKWYCP-RCK 266 (274)
T ss_pred ccccccCCCCCCcceEEEeccccc------cCCCCcccch-hhh
Confidence 46999987 99 99999999842 3466889997 554
No 84
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=95.51 E-value=0.073 Score=53.13 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=67.4
Q ss_pred cccEEEEEeeCC--eEEEEEEEEeec----CceeEEeeeeeeccccccChhHHHHHHHHHHHhh-cCccEEEecchhhHH
Q 000398 911 SGFYTAILERGD--EIISAASIRFHG----TQLAEMPFIGTRHIYRRQGMCRRLFCALESALCS-LKVEKLIIPAIAELM 983 (1570)
Q Consensus 911 rGFYtaVLEk~g--eVVSaAsLRI~G----~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~s-LGVerLvLPA~~ea~ 983 (1570)
.+.|.+++...+ ++||.+.+..+- ...+|+=..- .+.|+|||++...+.++.+.+-. +++.+|++-..+.-.
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 344566655544 999999998654 4667766554 89999999999999999998655 999999988888777
Q ss_pred HHhh--hccCceeccH
Q 000398 984 HTWT--RVFGFTSLEE 997 (1570)
Q Consensus 984 ~tWT--~KFGF~~I~~ 997 (1570)
..|. .|+||+....
T Consensus 143 ~S~rv~ek~Gf~~eg~ 158 (187)
T COG1670 143 ASIRVYEKLGFRLEGE 158 (187)
T ss_pred HHHHHHHHcCChhhhh
Confidence 6666 5999988765
No 85
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=95.34 E-value=0.022 Score=47.87 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=37.1
Q ss_pred eeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCc
Q 000398 943 IGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGF 992 (1570)
Q Consensus 943 VATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF 992 (1570)
++|.+.|||||+|+.|+..+++.+...|+. ....++.+|. ++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~-~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYE-KNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHH-hcCC
Confidence 999999999999999999999999998887 4445556666 5777
No 86
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=95.29 E-value=0.088 Score=60.27 Aligned_cols=76 Identities=18% Similarity=0.057 Sum_probs=56.2
Q ss_pred eeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceecc
Q 000398 919 ERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1570)
Q Consensus 919 Ek~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I~ 996 (1570)
..+++|||.|+=-......+||= |+|.++|||||+.+++..++...+..-|+--.|-.+ ..+--..-.|+||+...
T Consensus 171 ~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~-N~~S~~lA~kLGf~~~~ 246 (265)
T PF12746_consen 171 LHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCH-NLASIALAEKLGFHFDF 246 (265)
T ss_dssp EETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EES-SHHHHHHHHHCT--EEE
T ss_pred EECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCC-CHHHHHHHHHcCCcccc
Confidence 47899999887777788889985 799999999999999999999999999998888543 22223333589998653
No 87
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=95.26 E-value=0.089 Score=56.42 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=71.5
Q ss_pred cccccccEEEEEee-CCeEEEEEEEEe-----ecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEE---ec
Q 000398 907 RLNYSGFYTAILER-GDEIISAASIRF-----HGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI---IP 977 (1570)
Q Consensus 907 RLnfrGFYtaVLEk-~geVVSaAsLRI-----~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLv---LP 977 (1570)
.-.|.=.+.+.++. +.+|||-|.+-. +|.+.-=|-=+=++++|||+|+|+.|++.+-+++..+|..+|- +.
T Consensus 48 d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vld 127 (163)
T KOG3216|consen 48 DPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLD 127 (163)
T ss_pred CCCccEEEEEEEecCCCceeEEeeeecccccccccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 33444556666666 788888887644 2335555666789999999999999999999999999998864 44
Q ss_pred chhhHHHHhhhccCceeccHHHHHhhhccceEeecCc
Q 000398 978 AIAELMHTWTRVFGFTSLEESLKQEMRSLNMLVFPGI 1014 (1570)
Q Consensus 978 A~~ea~~tWT~KFGF~~I~~sek~~l~~~~ll~FpGT 1014 (1570)
--.-|+.+++ +.|++.+.. .+|..+.|-
T Consensus 128 wN~rAi~lY~-k~gaq~l~~--------W~l~r~~G~ 155 (163)
T KOG3216|consen 128 WNHRAILLYE-KVGAQDLKE--------WRLFRRTGE 155 (163)
T ss_pred cchhHHHHHH-HhCccccce--------eEEEEechH
Confidence 4456777887 677776554 455555553
No 88
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=94.95 E-value=0.0078 Score=72.78 Aligned_cols=43 Identities=33% Similarity=0.858 Sum_probs=35.0
Q ss_pred cccceeccCC-----CcEeeCCCCCccCCCcCCCCC------CCCCCCCCCCcc
Q 000398 719 DTCGICGDGG-----DLICCDGCPSTFHQSCLDIQM------LPPGDWHCPNCT 761 (1570)
Q Consensus 719 D~C~VCGDGG-----dLLcCDgCprAFH~~CL~pp~------VPeGdW~Cp~C~ 761 (1570)
..|.+|..++ +||.|+.|...||+.|+.+.. -+.+.|||..|.
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~ 222 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCN 222 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhc
Confidence 3499997543 699999999999999999753 355789999885
No 89
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.86 E-value=0.0057 Score=81.94 Aligned_cols=45 Identities=40% Similarity=1.053 Sum_probs=39.2
Q ss_pred cccccceeccCC---CcEeeCCCCCccCCCcCCCC--CCCCCCCCCCCcc
Q 000398 717 NDDTCGICGDGG---DLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCT 761 (1570)
Q Consensus 717 NDD~C~VCGDGG---dLLcCDgCprAFH~~CL~pp--~VPeGdW~Cp~C~ 761 (1570)
....|.+|...+ +++.|+.|.+.||.+|+.|. .+|.|+|+|+.|+
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCR 1156 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccc
Confidence 456899997644 59999999999999999985 5899999999998
No 90
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=94.83 E-value=0.064 Score=59.07 Aligned_cols=84 Identities=19% Similarity=0.294 Sum_probs=65.9
Q ss_pred cEEEEEeeCCeEEEEEEEEe---ecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecch---hhHHHHh
Q 000398 913 FYTAILERGDEIISAASIRF---HGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI---AELMHTW 986 (1570)
Q Consensus 913 FYtaVLEk~geVVSaAsLRI---~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~---~ea~~tW 986 (1570)
-|.+..+..+++||-+++|+ +|-.++=.-=|-+.+.|||+|+|++|++.+|.+....+.+.++|-.- .-++.++
T Consensus 93 ~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy 172 (202)
T KOG2488|consen 93 RYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFY 172 (202)
T ss_pred eEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHH
Confidence 46777777779999999998 55455555556677889999999999999999999888887765444 3466777
Q ss_pred hhccCceeccH
Q 000398 987 TRVFGFTSLEE 997 (1570)
Q Consensus 987 T~KFGF~~I~~ 997 (1570)
. ++||-+.+.
T Consensus 173 ~-~~gf~~~~~ 182 (202)
T KOG2488|consen 173 H-RLGFVVDEE 182 (202)
T ss_pred H-HcCcccCCC
Confidence 7 799988764
No 91
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=94.76 E-value=0.012 Score=71.10 Aligned_cols=45 Identities=38% Similarity=0.972 Sum_probs=36.7
Q ss_pred cccccceeccCCC---cEeeCCCCCccCCCcCCCCC--CCC----CCCCCCCcc
Q 000398 717 NDDTCGICGDGGD---LICCDGCPSTFHQSCLDIQM--LPP----GDWHCPNCT 761 (1570)
Q Consensus 717 NDD~C~VCGDGGd---LLcCDgCprAFH~~CL~pp~--VPe----GdW~Cp~C~ 761 (1570)
....|++|...-+ |+.||.|...||+.||.||. +|. ..|+|..|.
T Consensus 543 ~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 543 MNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred cceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 3468999986554 89999999999999999985 454 469999883
No 92
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=94.62 E-value=0.014 Score=70.58 Aligned_cols=49 Identities=31% Similarity=0.975 Sum_probs=38.6
Q ss_pred cccceec-----cCCCcEeeCCCCCccCCCcCCCC---CCCC-------CCCCCCCcc-------ccccCC
Q 000398 719 DTCGICG-----DGGDLICCDGCPSTFHQSCLDIQ---MLPP-------GDWHCPNCT-------CKFCGL 767 (1570)
Q Consensus 719 D~C~VCG-----DGGdLLcCDgCprAFH~~CL~pp---~VPe-------GdW~Cp~C~-------Ck~CG~ 767 (1570)
.+|.||- +.+++|-||.|+-..|..|++.- .+|. ..|||.-|. |.+|-.
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn 190 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPN 190 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCC
Confidence 3899995 35789999999999999999963 2343 469999998 667743
No 93
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.35 E-value=0.045 Score=69.81 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=50.5
Q ss_pred eeeeeeccccccChhHHHHHHHHHHHhhcCccEEEe--cchhhHHHHhhhccCceeccH-HHHHhhh-ccceEe
Q 000398 941 PFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLII--PAIAELMHTWTRVFGFTSLEE-SLKQEMR-SLNMLV 1010 (1570)
Q Consensus 941 PlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvL--PA~~ea~~tWT~KFGF~~I~~-sek~~l~-~~~ll~ 1010 (1570)
-=|||+|++|++|||++|+..|.+.++ -|+..|-. =+++++..||. +.||.+|-- ..|.... .|+.++
T Consensus 535 vRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~-rnGF~pVhls~~rn~~SGeys~i~ 606 (758)
T COG1444 535 VRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWL-RNGFVPVHLSPTRNASSGEYTAIV 606 (758)
T ss_pred EEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHH-HcCeEEEEecCccCcCCCceeEEE
Confidence 347999999999999999999999986 33443332 25799999999 899999875 3444443 455433
No 94
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=94.26 E-value=0.16 Score=50.96 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=61.6
Q ss_pred cccEEEEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhh
Q 000398 911 SGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1570)
Q Consensus 911 rGFYtaVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT 987 (1570)
.+||++ ..+|+.|+.++.--.|.+..=|+---|.+++||||+++.|+....+.++.-|.+ ++|.-+-+...|.
T Consensus 15 ~~~y~~--~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k--iiP~Csf~~a~~~ 87 (99)
T COG2388 15 NGRYVL--TDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK--IIPLCSFAVATYF 87 (99)
T ss_pred ceEEEE--ecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe--EcccchHHHHHHH
Confidence 567776 788999999999888889999999999999999999999999999999999884 5566664444444
No 95
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=93.98 E-value=0.084 Score=57.60 Aligned_cols=77 Identities=10% Similarity=0.165 Sum_probs=61.2
Q ss_pred eeCCeEEEEEEEE-eecC-ceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceecc
Q 000398 919 ERGDEIISAASIR-FHGT-QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLE 996 (1570)
Q Consensus 919 Ek~geVVSaAsLR-I~G~-dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I~ 996 (1570)
|.+.+||+-+-|- |... +..-+-.|.|....||||+|++||+..|..++..|...+.|..+ +-..||+ ++||..-+
T Consensus 63 E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~-DQ~~FYe-~lGYe~c~ 140 (225)
T KOG3397|consen 63 EENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTD-DQCRFYE-SLGYEKCD 140 (225)
T ss_pred ccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecc-cchhhhh-hhcccccC
Confidence 3556888877653 3333 45566788899999999999999999999999999999998765 4568888 68998766
Q ss_pred H
Q 000398 997 E 997 (1570)
Q Consensus 997 ~ 997 (1570)
+
T Consensus 141 P 141 (225)
T KOG3397|consen 141 P 141 (225)
T ss_pred c
Confidence 5
No 96
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=93.90 E-value=0.0083 Score=49.94 Aligned_cols=33 Identities=42% Similarity=1.118 Sum_probs=19.9
Q ss_pred CcEeeCCCCCccCCCcCCCCCCCCC-CCCCCCcc
Q 000398 729 DLICCDGCPSTFHQSCLDIQMLPPG-DWHCPNCT 761 (1570)
Q Consensus 729 dLLcCDgCprAFH~~CL~pp~VPeG-dW~Cp~C~ 761 (1570)
.||.|+.|.-++|..|.+...+|.+ +|+|..|.
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred ceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 5899999999999999999888887 89998774
No 97
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=93.70 E-value=0.21 Score=58.11 Aligned_cols=80 Identities=20% Similarity=0.355 Sum_probs=70.1
Q ss_pred cEEEEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCc
Q 000398 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGF 992 (1570)
Q Consensus 913 FYtaVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF 992 (1570)
+++++...+++||+|+++ +|.- |+.|||++.+||-|.--.|+.++-.++-++|.-+|||=.-++-..+.. .+||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGnv---ikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk-~~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGNV---IKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFK-QCGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccce---eEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHH-hCCc
Confidence 467777888999999997 6764 789999999999999999999999999999999999877777777766 6999
Q ss_pred eeccHH
Q 000398 993 TSLEES 998 (1570)
Q Consensus 993 ~~I~~s 998 (1570)
..|..-
T Consensus 111 ~~i~~~ 116 (352)
T COG3053 111 SEIASA 116 (352)
T ss_pred eEeecc
Confidence 998763
No 98
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=93.39 E-value=0.34 Score=45.93 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=47.4
Q ss_pred EeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEE
Q 000398 918 LERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKL 974 (1570)
Q Consensus 918 LEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerL 974 (1570)
|..+|+.++...++. ..+.-.|--.-|.+++||||+++.||+++.+.++.-|.+-+
T Consensus 4 ~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~ 59 (78)
T PF14542_consen 4 LKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV 59 (78)
T ss_dssp EESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE
Confidence 356788999999987 77788888899999999999999999999999999887644
No 99
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=92.00 E-value=0.84 Score=44.28 Aligned_cols=62 Identities=16% Similarity=0.020 Sum_probs=54.1
Q ss_pred cEEEEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEE
Q 000398 913 FYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI 975 (1570)
Q Consensus 913 FYtaVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLv 975 (1570)
...++|..+|++||++.. +...+.+..-++++.++|++.+.+..|+..+.+.+.+.|++.+=
T Consensus 71 ~~l~~~~~~g~~va~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d 132 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALG-FRHGGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFD 132 (142)
T ss_pred EEEEEEEECCEEEEEEEE-EEECCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEE
Confidence 456677889999988876 55566788999999999999999999999999999999998875
No 100
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=91.56 E-value=0.23 Score=54.67 Aligned_cols=86 Identities=17% Similarity=0.281 Sum_probs=60.2
Q ss_pred cCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcC-ccEEEecch---hhHHHHhhhccCceeccHHHHHhhhccceE
Q 000398 934 GTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLK-VEKLIIPAI---AELMHTWTRVFGFTSLEESLKQEMRSLNML 1009 (1570)
Q Consensus 934 G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLG-VerLvLPA~---~ea~~tWT~KFGF~~I~~sek~~l~~~~ll 1009 (1570)
|.++.-|-.++|.+.||+.|+|..|++.+.+.+...+ ..++++.+. ..++.+++ ++||+.+....- -+...
T Consensus 86 ~~~~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~-~~gF~~~~~~~~----~y~~~ 160 (187)
T KOG3138|consen 86 GNRVIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYE-KRGFEIVERLKN----YYSIL 160 (187)
T ss_pred ccceeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHH-hcCceEeecccc----ccccc
Confidence 3336788999999999999999999999999999998 665555443 34666666 899999864221 12223
Q ss_pred eecCccceeeccccc
Q 000398 1010 VFPGIDMLQKLLLEQ 1024 (1570)
Q Consensus 1010 ~FpGTsmLQK~L~~~ 1024 (1570)
.-+-...|.|.|...
T Consensus 161 ~~~~~~~l~~~~~~~ 175 (187)
T KOG3138|consen 161 GPPDDSFLRKLLIHG 175 (187)
T ss_pred cCcchhhhhhheecC
Confidence 334455566666543
No 101
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=90.31 E-value=0.24 Score=53.38 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=49.1
Q ss_pred eEEeeeeeeccccccChhHHHHHH-HHHHHhhcCccEEEecchhhHHHHhhhccCceeccH
Q 000398 938 AEMPFIGTRHIYRRQGMCRRLFCA-LESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLEE 997 (1570)
Q Consensus 938 AEmPlVATr~~yRrQGmgR~Lv~a-IE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I~~ 997 (1570)
+-|-.+|+.++||.||++..|+.. |..+-..-=|.+.+|=+-..+++||. +|||+.|.+
T Consensus 102 i~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYE-r~gFk~vgp 161 (190)
T KOG4144|consen 102 IHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYE-RFGFKAVGP 161 (190)
T ss_pred eeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhH-hcCceeecc
Confidence 556678999999999999999877 44444555677888888899999999 899999986
No 102
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=89.21 E-value=0.55 Score=56.01 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=63.8
Q ss_pred CcccccccEEEEEeeCCeEEEEEEEEee------cC---ceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEe
Q 000398 906 NRLNYSGFYTAILERGDEIISAASIRFH------GT---QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLII 976 (1570)
Q Consensus 906 kRLnfrGFYtaVLEk~geVVSaAsLRI~------G~---dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvL 976 (1570)
+-+++.++|++ ..+.++++ .|++. |. ..|-|-.||+-|+|||+|+-|.|+....+..+.-|+.-.+|
T Consensus 34 kil~~~n~~vi--~~nqkl~s--~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L 109 (389)
T COG4552 34 KILAEPNSYVI--YMNQKLAS--RLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSAL 109 (389)
T ss_pred hhccCCcceEE--eehhhhhh--cccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEe
Confidence 34567778876 56666644 34443 44 45677889999999999999999999999999999999887
Q ss_pred cchhhHHHHhhhccCceecc
Q 000398 977 PAIAELMHTWTRVFGFTSLE 996 (1570)
Q Consensus 977 PA~~ea~~tWT~KFGF~~I~ 996 (1570)
.+.. ..++. ||||..-.
T Consensus 110 ~P~s--~~iYr-KfGye~as 126 (389)
T COG4552 110 HPFS--GGIYR-KFGYEYAS 126 (389)
T ss_pred ccCc--hhhHh-hccccccc
Confidence 6553 35666 89997654
No 103
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=87.42 E-value=1 Score=49.39 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=54.9
Q ss_pred EEEEEeeCCeEEEEEEEEeecCceeEEe-----eeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHH
Q 000398 914 YTAILERGDEIISAASIRFHGTQLAEMP-----FIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELM 983 (1570)
Q Consensus 914 YtaVLEk~geVVSaAsLRI~G~dlAEmP-----lVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~ 983 (1570)
|.+|-+ ++++||...||..=.+ ..++ --+|+|..||+||++.++.-..+.++.||++.+.|-++.+-.
T Consensus 71 y~~v~~-d~~ivG~i~lRh~Ln~-~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ 143 (174)
T COG3981 71 YWAVDE-DGQIVGFINLRHQLND-FLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNI 143 (174)
T ss_pred EEEEec-CCcEEEEEEeeeecch-HHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCc
Confidence 555555 8999999999975332 2222 357999999999999999999999999999999988886643
No 104
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=86.11 E-value=2.3 Score=46.48 Aligned_cols=82 Identities=13% Similarity=0.267 Sum_probs=62.4
Q ss_pred eCCeEEEEEEEEeecC-----ceeEEeeeeeeccccccChhHHHHHHHHH-HHhhcCccEEEecch---hhHHHHhhhcc
Q 000398 920 RGDEIISAASIRFHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALES-ALCSLKVEKLIIPAI---AELMHTWTRVF 990 (1570)
Q Consensus 920 k~geVVSaAsLRI~G~-----dlAEmPlVATr~~yRrQGmgR~Lv~aIE~-~L~sLGVerLvLPA~---~ea~~tWT~KF 990 (1570)
.+|.|||-.....+-. .-.-|-.|||.-.|||.|++++||..-.+ ++...+-+.+=|..+ ..|+..|++.+
T Consensus 49 ~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl 128 (193)
T KOG3235|consen 49 ENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTL 128 (193)
T ss_pred CCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhcc
Confidence 7889999877655441 13457799999999999999999986554 455566677767666 46899999999
Q ss_pred CceeccHHHHH
Q 000398 991 GFTSLEESLKQ 1001 (1570)
Q Consensus 991 GF~~I~~sek~ 1001 (1570)
||.+.+-+-+.
T Consensus 129 ~F~v~eve~kY 139 (193)
T KOG3235|consen 129 GFVVCEVEPKY 139 (193)
T ss_pred ceEEeeccccc
Confidence 99998865443
No 105
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=86.08 E-value=0.37 Score=55.10 Aligned_cols=35 Identities=17% Similarity=0.563 Sum_probs=27.5
Q ss_pred CceecCC--cch-hhhhhhccccccccccCCCCCccceeCccchh
Q 000398 781 SALLPCA--MCE-KKYHKLCMQEMDALSDNLTGLVTSFCGRKCQE 822 (1570)
Q Consensus 781 ~~LL~CD--QCE-RaYHv~CL~p~d~~pl~~~psg~WFCsqeCqe 822 (1570)
+.|+-|| -|+ .|||..|+.. ...|.+.||| ..|+.
T Consensus 232 GqMVaCDn~nCkrEWFH~~CVGL------k~pPKG~WYC-~eCk~ 269 (271)
T COG5034 232 GQMVACDNANCKREWFHLECVGL------KEPPKGKWYC-PECKK 269 (271)
T ss_pred ccceecCCCCCchhheecccccc------CCCCCCcEeC-HHhHh
Confidence 4689997 587 6899999984 3457899999 68875
No 106
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=85.67 E-value=0.47 Score=62.82 Aligned_cols=35 Identities=20% Similarity=0.500 Sum_probs=28.2
Q ss_pred CCceecCCcchhhhhhhccccccccccCCCCCccceeCccch
Q 000398 780 TSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1570)
Q Consensus 780 v~~LL~CDQCERaYHv~CL~p~d~~pl~~~psg~WFCsqeCq 821 (1570)
.+.+++|+.|..+||+.|+.- ...+++.|+| +.|.
T Consensus 233 ~n~ivfCD~Cnl~VHq~Cygi------~~ipeg~WlC-r~Cl 267 (1051)
T KOG0955|consen 233 SNVIVFCDGCNLAVHQECYGI------PFIPEGQWLC-RRCL 267 (1051)
T ss_pred CceEEEcCCCcchhhhhccCC------CCCCCCcEee-hhhc
Confidence 356999999999999999982 2347799999 6664
No 107
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=83.68 E-value=0.5 Score=64.42 Aligned_cols=50 Identities=22% Similarity=0.549 Sum_probs=38.0
Q ss_pred ccccCCCCCCCCCCCCCCCCceecCCcchhhhhhhccccccccccCCCCCccceeCccchhhHH
Q 000398 762 CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSE 825 (1570)
Q Consensus 762 Ck~CG~~g~dseeeD~~Sv~~LL~CDQCERaYHv~CL~p~d~~pl~~~psg~WFCsqeCqeI~E 825 (1570)
|.+|.....+ ..|+.|+.|..+||.+|+++. ....+.+.|||+ .|..-..
T Consensus 1111 c~~cr~k~~~---------~~m~lc~~c~~~~h~~C~rp~----~~~~~~~dW~C~-~c~~e~~ 1160 (1404)
T KOG1245|consen 1111 CKVCRRKKQD---------EKMLLCDECLSGFHLFCLRPA----LSSVPPGDWMCP-SCRKEHR 1160 (1404)
T ss_pred hhhhhhcccc---------hhhhhhHhhhhhHHHHhhhhh----hccCCcCCccCC-ccchhhh
Confidence 7788766543 358999999999999999973 344567889995 7776554
No 108
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=83.19 E-value=0.5 Score=59.65 Aligned_cols=37 Identities=27% Similarity=0.597 Sum_probs=29.2
Q ss_pred CCCceecCC--cchhhhhhhccccccccccCCCCCccceeCccchh
Q 000398 779 TTSALLPCA--MCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQE 822 (1570)
Q Consensus 779 Sv~~LL~CD--QCERaYHv~CL~p~d~~pl~~~psg~WFCsqeCqe 822 (1570)
..+.|++|| -|.-+.|+.|+.-. ..|.++||| ++|..
T Consensus 18 aeNPLVYCDG~nCsVAVHQaCYGIv------qVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 18 AENPLVYCDGHNCSVAVHQACYGIV------QVPTGPWFC-RKCES 56 (900)
T ss_pred ccCceeeecCCCceeeeehhcceeE------ecCCCchhh-hhhhh
Confidence 346799997 59999999999842 356799999 78854
No 109
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=82.14 E-value=6.8 Score=43.33 Aligned_cols=83 Identities=19% Similarity=0.311 Sum_probs=57.2
Q ss_pred EEEEEeeCCeEEEEEEE-Eeec----Cc--eeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHh
Q 000398 914 YTAILERGDEIISAASI-RFHG----TQ--LAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTW 986 (1570)
Q Consensus 914 YtaVLEk~geVVSaAsL-RI~G----~d--lAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tW 986 (1570)
|.++|.--+.||+..++ +.+. .+ +-=+=|.=+.|+|||+|+++.+...+-+.+.. +=...++.+...+..+|
T Consensus 48 ~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~-~~~N~~~~~~~~~~~~w 126 (181)
T PF06852_consen 48 VLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDS-VDDNSVAQGNVKMSNFW 126 (181)
T ss_pred EEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHHHHhcc-CCCceeeecCHHHHHHH
Confidence 55555555668776665 3332 23 55555666899999999997555554455555 33456777888999999
Q ss_pred hhccCceeccH
Q 000398 987 TRVFGFTSLEE 997 (1570)
Q Consensus 987 T~KFGF~~I~~ 997 (1570)
..-|||..+..
T Consensus 127 ~k~~G~~~~~h 137 (181)
T PF06852_consen 127 HKMFGFDDYGH 137 (181)
T ss_pred HHHhCCCCCcc
Confidence 99999887766
No 110
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=82.11 E-value=1.5 Score=53.75 Aligned_cols=70 Identities=21% Similarity=0.468 Sum_probs=44.3
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCCceecCCcchhhhhhhcccccccccc---CC---CCCccceeCccchh---hHH
Q 000398 755 WHCPNCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSD---NL---TGLVTSFCGRKCQE---LSE 825 (1570)
Q Consensus 755 W~Cp~C~Ck~CG~~g~dseeeD~~Sv~~LL~CDQCERaYHv~CL~p~d~~pl---~~---~psg~WFCsqeCqe---I~E 825 (1570)
=||..|.|.+|.+...+ ......+.|+.|..+.|..|.-....... .. .....-|+|..|.. ++.
T Consensus 124 gFC~~C~C~iC~kfD~~------~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~seLlG 197 (446)
T PF07227_consen 124 GFCRRCMCCICSKFDDN------KNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTSELLG 197 (446)
T ss_pred CccccCCccccCCcccC------CCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChhhHHH
Confidence 47999999999875332 23345799999999999999654321110 11 11244677788875 444
Q ss_pred HHHhH
Q 000398 826 HLQKY 830 (1570)
Q Consensus 826 ~LQKL 830 (1570)
.++++
T Consensus 198 ~vk~v 202 (446)
T PF07227_consen 198 FVKKV 202 (446)
T ss_pred HHHHH
Confidence 44444
No 111
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=81.67 E-value=1.3 Score=42.11 Aligned_cols=58 Identities=21% Similarity=0.369 Sum_probs=38.3
Q ss_pred HhcCeeeeeccCCC---CCccccEeeCCCCceeeehHHHHHHHHHHhccccccCCCCCCCCCCcC
Q 000398 404 VEAGWTIDYRPRKN---RDYLDAVYINPTGTAYWSIIKAYDALTKQLNDEEDEAKPSADGSPFTP 465 (1570)
Q Consensus 404 l~aGWtid~rpR~~---r~Y~DaVYi~p~G~~yWSi~kAY~~~~~~~~~~~~~~k~~~~~~~f~~ 465 (1570)
|-.||+...+.|.+ ..-.|..|++|.|+.+.|...-...| +..........+-|.|.+
T Consensus 11 Lp~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL----~~~~~~~~l~~~~F~F~~ 71 (77)
T PF01429_consen 11 LPDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRSKKEVVRYL----KENPSEHDLKPENFSFSK 71 (77)
T ss_dssp STTT-EEEEEESSSSTTTTSEEEEEEETTSEEESSHHHHHHHH----TTSS---SS-CTTBBTTT
T ss_pred CCCCCEEEEEEecCCCcCCceEEEEECCCCCEEeCHHHHHHHH----HhCCCcccCCHhHCCCCC
Confidence 56799999998884 35799999999999999987765555 322222223334566653
No 112
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=81.06 E-value=1.3 Score=54.46 Aligned_cols=64 Identities=11% Similarity=0.166 Sum_probs=47.9
Q ss_pred EEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceeccH
Q 000398 930 IRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLEE 997 (1570)
Q Consensus 930 LRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I~~ 997 (1570)
|||+|..+..=. ....+|+||||+.||...|+.++.-+.+++.+=+---+.+-+. ||||...-+
T Consensus 446 lhvyg~~vpig~---~~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~-k~GY~~~gp 509 (515)
T COG1243 446 LHVYGSEVPIGK---REDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYR-KLGYELDGP 509 (515)
T ss_pred hhcccccccccc---CcchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHH-HhCccccCC
Confidence 455555433222 2578999999999999999999999998877666666666666 899976543
No 113
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=79.69 E-value=2 Score=46.83 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=42.6
Q ss_pred EEeeeeeeccccccChhHHHHHHHHHHHhhcC---ccEEEecchhhHHHHhhhccCcee
Q 000398 939 EMPFIGTRHIYRRQGMCRRLFCALESALCSLK---VEKLIIPAIAELMHTWTRVFGFTS 994 (1570)
Q Consensus 939 EmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLG---VerLvLPA~~ea~~tWT~KFGF~~ 994 (1570)
-+--|++.|.|||+|++..||+.||+....-+ |..+|.-.-.-|+.+++ +|||.+
T Consensus 71 HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYk-kLGY~~ 128 (173)
T KOG3234|consen 71 HVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYK-KLGYSV 128 (173)
T ss_pred EEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHH-hcCceE
Confidence 34457889999999999999999999877664 33444445567889998 788864
No 114
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=79.40 E-value=1.1 Score=57.18 Aligned_cols=46 Identities=20% Similarity=0.563 Sum_probs=34.1
Q ss_pred ccccCCCCCCCCCCCCCCCCceecCCcchhhhhhhccccccccccCCCCCccceeCccch
Q 000398 762 CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1570)
Q Consensus 762 Ck~CG~~g~dseeeD~~Sv~~LL~CDQCERaYHv~CL~p~d~~pl~~~psg~WFCsqeCq 821 (1570)
|.+|..+..+. .+.|++|+.|.-..|..|+.-. ..|.++|.| ..|.
T Consensus 274 CDvCrspD~e~-------~neMVfCd~Cn~cVHqaCyGIl------e~p~gpWlC-r~Ca 319 (893)
T KOG0954|consen 274 CDVCRSPDSEE-------ANEMVFCDKCNICVHQACYGIL------EVPEGPWLC-RTCA 319 (893)
T ss_pred eceecCCCccc-------cceeEEeccchhHHHHhhhcee------ecCCCCeee-hhcc
Confidence 66777665432 2569999999999999999832 246689999 5664
No 115
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=77.58 E-value=3 Score=40.26 Aligned_cols=57 Identities=26% Similarity=0.499 Sum_probs=41.3
Q ss_pred HhcCeeeeeccCCC--CCccccEeeCCCCceeeehHHHHHHHHHHhccccccCCCCCCCCCCcC
Q 000398 404 VEAGWTIDYRPRKN--RDYLDAVYINPTGTAYWSIIKAYDALTKQLNDEEDEAKPSADGSPFTP 465 (1570)
Q Consensus 404 l~aGWtid~rpR~~--r~Y~DaVYi~p~G~~yWSi~kAY~~~~~~~~~~~~~~k~~~~~~~f~~ 465 (1570)
|-.||+...++|++ .-..|..||+|.|+.+=|.... .+.|++.. ..-+....|.|++
T Consensus 7 lp~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS~~ev----~~yL~~~~-~~~~~~~~FdF~~ 65 (77)
T cd01396 7 LPPGWKRELVPRKSGSAGKFDVYYISPTGKKFRSKVEL----ARYLEKNG-PTSLDLSDFDFTV 65 (77)
T ss_pred CCCCCEEEEEEecCCCCCcceEEEECCCCCEEECHHHH----HHHHHhCC-CCCCcHhHcccCC
Confidence 56899999999998 8899999999999988776543 44454432 2224445577764
No 116
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=77.41 E-value=14 Score=41.91 Aligned_cols=92 Identities=13% Similarity=0.209 Sum_probs=68.3
Q ss_pred CCCCCcccccccEEEEEe-eCCeEEEEEEEEee------------------------------cCceeEEeeeeeecccc
Q 000398 902 GSNFNRLNYSGFYTAILE-RGDEIISAASIRFH------------------------------GTQLAEMPFIGTRHIYR 950 (1570)
Q Consensus 902 GSnFkRLnfrGFYtaVLE-k~geVVSaAsLRI~------------------------------G~dlAEmPlVATr~~yR 950 (1570)
|-++..+|-.--|.+|.. .+|++||++-|.-. ...++|+==+|+.++||
T Consensus 45 ~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r 124 (241)
T TIGR03694 45 GLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFR 124 (241)
T ss_pred CCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHh
Confidence 445666666566666654 35889888877431 13588898999999999
Q ss_pred cc--------C--------------------hhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCcee
Q 000398 951 RQ--------G--------------------MCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1570)
Q Consensus 951 rQ--------G--------------------mgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~ 994 (1570)
++ | +...|+.++-+.+...|+.+++.-+.+-+..++. ++||..
T Consensus 125 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~-r~G~~~ 195 (241)
T TIGR03694 125 RRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLLS-RFGIQF 195 (241)
T ss_pred CCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHH-HhCCce
Confidence 74 2 3467999999999999999999888887777675 788654
No 117
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=77.29 E-value=1.1 Score=55.10 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=27.4
Q ss_pred CCCceecCCcchhhhhhhccccccccccCCCCCccceeCccc
Q 000398 779 TTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKC 820 (1570)
Q Consensus 779 Sv~~LL~CDQCERaYHv~CL~p~d~~pl~~~psg~WFCsqeC 820 (1570)
+.+.+++|+-|+-+.|..|+.-. ..|++.|+| +.|
T Consensus 206 N~naiVfCdgC~i~VHq~CYGI~------f~peG~WlC-rkC 240 (669)
T COG5141 206 NSNAIVFCDGCEICVHQSCYGIQ------FLPEGFWLC-RKC 240 (669)
T ss_pred CcceEEEecCcchhhhhhcccce------ecCcchhhh-hhh
Confidence 34679999999999999999831 246788998 566
No 118
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=72.44 E-value=2.5 Score=41.72 Aligned_cols=66 Identities=24% Similarity=0.635 Sum_probs=42.7
Q ss_pred ccceeccCCCcEeeCCCCCccCCCcCCC-CC----------------CCCC--CCCCCCccccccCCCCCCCCCCCCCCC
Q 000398 720 TCGICGDGGDLICCDGCPSTFHQSCLDI-QM----------------LPPG--DWHCPNCTCKFCGLAGEDDAEGDDTTT 780 (1570)
Q Consensus 720 ~C~VCGDGGdLLcCDgCprAFH~~CL~p-p~----------------VPeG--dW~Cp~C~Ck~CG~~g~dseeeD~~Sv 780 (1570)
.|.+|...|.++--..-....|..|.-. +. ++.. .+. |.+|+...
T Consensus 2 ~C~lC~~~~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~~~-----C~iC~~~~----------- 65 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFKLK-----CSICGKSG----------- 65 (110)
T ss_pred ccEeCCCCCCcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhcCCc-----CcCCCCCC-----------
Confidence 4888877655444444678888888852 10 1111 222 56776543
Q ss_pred CceecCCc--chhhhhhhccccc
Q 000398 781 SALLPCAM--CEKKYHKLCMQEM 801 (1570)
Q Consensus 781 ~~LL~CDQ--CERaYHv~CL~p~ 801 (1570)
+..+.|.. |.+.||+.|....
T Consensus 66 G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 66 GACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred ceeEEcCCCCCCcCCCHHHHHHC
Confidence 24789988 9999999998753
No 119
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=68.02 E-value=1.3 Score=43.00 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=25.3
Q ss_pred CceeecceeeeccCCcccccc-ceeeccCCcccc
Q 000398 656 SKILTVSKFEIHAGSKLRQPF-QNIYLDSGVSLL 688 (1570)
Q Consensus 656 ~KvFSpSeFEaHAGsk~RrPY-qNIyLedGrSLL 688 (1570)
.++|||++||.|+|....+.| .+|++ +|.+|-
T Consensus 41 g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~ 73 (82)
T PF01342_consen 41 GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLG 73 (82)
T ss_dssp TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHH
T ss_pred CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHH
Confidence 789999999999999888878 66766 688775
No 120
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=67.67 E-value=4.3 Score=50.19 Aligned_cols=45 Identities=27% Similarity=0.600 Sum_probs=35.2
Q ss_pred ccccccceeccCCCcEeeCCCCCccCCCcCCCCCCCCCCCCCCCcc
Q 000398 716 PNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1570)
Q Consensus 716 ~NDD~C~VCGDGGdLLcCDgCprAFH~~CL~pp~VPeGdW~Cp~C~ 761 (1570)
.+.+.|.+|.++|.+++|+.|..++|..|.... .|...|.|..|.
T Consensus 87 ~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~~-~~~c~~~~~d~~ 131 (463)
T KOG1081|consen 87 IEPSECFVCFKGGSLVTCKSRIQAPHRKCKPAQ-LEKCSKRCTDCR 131 (463)
T ss_pred CCcchhccccCCCccceeccccccccccCcCcc-CcccccCCccee
Confidence 356799999999999999988888888888653 466666665554
No 121
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=67.56 E-value=7.9 Score=35.56 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=33.0
Q ss_pred HhcCeeeeeccCCC--CCccccEeeCCCCceeeehHHHHHHH
Q 000398 404 VEAGWTIDYRPRKN--RDYLDAVYINPTGTAYWSIIKAYDAL 443 (1570)
Q Consensus 404 l~aGWtid~rpR~~--r~Y~DaVYi~p~G~~yWSi~kAY~~~ 443 (1570)
+-.||+-..++|++ +-..|-.|++|.|+..=|..-.-..|
T Consensus 6 ~p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk~~Rs~~ev~~yL 47 (62)
T cd00122 6 LPPGWKRELVIRKSGSAGKGDVYYYSPCGKKLRSKPEVARYL 47 (62)
T ss_pred CCCCeEEEEEEcCCCCCCcceEEEECCCCceecCHHHHHHHH
Confidence 36799999999998 89999999999999887765544444
No 122
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=66.60 E-value=1.1 Score=59.14 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=40.4
Q ss_pred cccccceeccCCCcEeeCC-CCCccCC-CcCCC----CCCCCCCCCCCCccc
Q 000398 717 NDDTCGICGDGGDLICCDG-CPSTFHQ-SCLDI----QMLPPGDWHCPNCTC 762 (1570)
Q Consensus 717 NDD~C~VCGDGGdLLcCDg-CprAFH~-~CL~p----p~VPeGdW~Cp~C~C 762 (1570)
+.+.|.+|+..+.++||++ |+..||. .||+- ..++++.|+|+.|.-
T Consensus 427 i~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~ 478 (1414)
T KOG1473|consen 427 ISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEII 478 (1414)
T ss_pred eeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHH
Confidence 4568999999999999998 9999998 99994 248999999999973
No 123
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=65.95 E-value=1.9 Score=36.31 Aligned_cols=34 Identities=24% Similarity=0.548 Sum_probs=16.8
Q ss_pred CceecCCcchhhhhhhccccccccccCCCCCccceeCccc
Q 000398 781 SALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKC 820 (1570)
Q Consensus 781 ~~LL~CDQCERaYHv~CL~p~d~~pl~~~psg~WFCsqeC 820 (1570)
+.|+.|+.|.-..|..|+.-... .....|+| ..|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~-----~~~~~W~C-~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEV-----PDGDDWLC-DRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS-------SS------HHH
T ss_pred CceEEeCCCCCcCChhhCCcccC-----CCCCcEEC-CcC
Confidence 35899999999999999984211 12235998 444
No 124
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=64.91 E-value=2.9 Score=44.93 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=20.0
Q ss_pred hhhhhccccccccccCCCCCccceeCccch
Q 000398 792 KYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1570)
Q Consensus 792 aYHv~CL~p~d~~pl~~~psg~WFCsqeCq 821 (1570)
.||..||.| |+...|.+.|+|+ .|.
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~Cp-~C~ 25 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWICP-FCE 25 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCCC-CCc
Confidence 499999996 4566788999996 665
No 125
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=64.68 E-value=13 Score=37.49 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=42.3
Q ss_pred CcccccccEEEEEeeCCeEEEEEEEEeec--CceeEEeeeeeeccccccChhHHHHHHHHHHH
Q 000398 906 NRLNYSGFYTAILERGDEIISAASIRFHG--TQLAEMPFIGTRHIYRRQGMCRRLFCALESAL 966 (1570)
Q Consensus 906 kRLnfrGFYtaVLEk~geVVSaAsLRI~G--~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L 966 (1570)
.+|. ..+++++ ++...+||.+.--+ ..++-|=.+|+.+..|++|+++.|+.+|-+..
T Consensus 5 ~~l~--~~~~~y~--~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 5 DRLQ--RLHAIYL--SEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred hhcC--cceEEEE--eCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 3444 3344433 44566777775433 48999999999999999999999999998763
No 126
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=60.74 E-value=22 Score=39.86 Aligned_cols=85 Identities=20% Similarity=0.179 Sum_probs=47.4
Q ss_pred chhhHhHhhhhhccCccccCCCCCccccceeeccCCCCCcccccccEEEEEeeCC--eEEEEEEEEeecCceeEEeeeee
Q 000398 868 SKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILERGD--EIISAASIRFHGTQLAEMPFIGT 945 (1570)
Q Consensus 868 SKLAvALtIMhECFdPIVD~rSGrDLIpdMVYNrGSnFkRLnfrGFYtaVLEk~g--eVVSaAsLRI~G~dlAEmPlVAT 945 (1570)
..-+..|-.|-.+|. |.+| +.| ..+.--||++.-..++ ++||-=+---+..+---|--|-|
T Consensus 26 ~~yCqnLcLlaKLFL---d~Kt-------lyy-------dv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~ 88 (188)
T PF01853_consen 26 KLYCQNLCLLAKLFL---DHKT-------LYY-------DVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILT 88 (188)
T ss_dssp HHHHHHHHHHHHTT----SSGC-------CTT--------STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE
T ss_pred chHHHHHHHHHHHHh---hCeE-------EEe-------ecCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhh
Confidence 445677777778887 4333 223 2223346666544433 34443332222222235667899
Q ss_pred eccccccChhHHHHHHHHHHHhhc
Q 000398 946 RHIYRRQGMCRRLFCALESALCSL 969 (1570)
Q Consensus 946 r~~yRrQGmgR~Lv~aIE~~L~sL 969 (1570)
.|.|||+|+|+.|++.-=.+.+.-
T Consensus 89 lP~yQrkGyG~~LI~fSY~LSr~e 112 (188)
T PF01853_consen 89 LPPYQRKGYGRFLIDFSYELSRRE 112 (188)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHT
T ss_pred cchhhhcchhhhhhhhHHHHhhcc
Confidence 999999999999998755554433
No 127
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.68 E-value=6 Score=47.55 Aligned_cols=44 Identities=34% Similarity=0.736 Sum_probs=31.5
Q ss_pred cccceecc---CCCcEeeCCCCCccCCCcCCCCCCCCCCCCCCCcccc
Q 000398 719 DTCGICGD---GGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCK 763 (1570)
Q Consensus 719 D~C~VCGD---GGdLLcCDgCprAFH~~CL~pp~VPeGdW~Cp~C~Ck 763 (1570)
+.|.+|-+ .|+.|-==-|...||..|.++..... .=+||-|+|.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCc
Confidence 79999976 35533334588999999999875433 3368888764
No 128
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=60.19 E-value=4.2 Score=37.44 Aligned_cols=29 Identities=31% Similarity=1.049 Sum_probs=25.3
Q ss_pred cccceecc----CCCcEeeCCCCCccCCCcCCC
Q 000398 719 DTCGICGD----GGDLICCDGCPSTFHQSCLDI 747 (1570)
Q Consensus 719 D~C~VCGD----GGdLLcCDgCprAFH~~CL~p 747 (1570)
..|.+|++ +++.+.|..|...||..|...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 47999985 678999999999999999854
No 129
>smart00258 SAND SAND domain.
Probab=60.04 E-value=3.9 Score=39.58 Aligned_cols=39 Identities=33% Similarity=0.530 Sum_probs=30.6
Q ss_pred CeecCCC---CceeecceeeeccCCcccccc-ceeeccCCcccc
Q 000398 649 GIHCGCC---SKILTVSKFEIHAGSKLRQPF-QNIYLDSGVSLL 688 (1570)
Q Consensus 649 GI~CsCC---~KvFSpSeFEaHAGsk~RrPY-qNIyLedGrSLL 688 (1570)
||.+.|= +++|||++||.+||....+.| ..|.. +|++|.
T Consensus 22 G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr 64 (73)
T smart00258 22 GISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLR 64 (73)
T ss_pred CcccCCccCCCEEEChHHHHhhcCCcccCCcchheeE-CCccHH
Confidence 6666662 589999999999999888888 45654 688875
No 130
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=58.80 E-value=1.5 Score=53.25 Aligned_cols=61 Identities=16% Similarity=0.416 Sum_probs=32.8
Q ss_pred CCCCccCCCcCC-------CCCCC-----CCCCCCCCcc-------ccccCCCCCCCCCCCCCCCCceecCCcchhhhhh
Q 000398 735 GCPSTFHQSCLD-------IQMLP-----PGDWHCPNCT-------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHK 795 (1570)
Q Consensus 735 gCprAFH~~CL~-------pp~VP-----eGdW~Cp~C~-------Ck~CG~~g~dseeeD~~Sv~~LL~CDQCERaYHv 795 (1570)
.|+++||..|.. +..+| ...-||..|- |.+|+.+.--...++ ..+.--.=+|-||+
T Consensus 351 A~GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~~-----etvRvvamdr~fHv 425 (468)
T KOG1701|consen 351 ALGKAYHPGCFTCVVCARCLDGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNPILPRDGKD-----ETVRVVAMDRDFHV 425 (468)
T ss_pred hcccccCCCceEEEEeccccCCccccccCCCceeeehhhhhhcCcchhhccCCccCCCCCc-----ceEEEEEccccccc
Confidence 466777777663 11222 2456777663 888987653211111 01111123678999
Q ss_pred hcccc
Q 000398 796 LCMQE 800 (1570)
Q Consensus 796 ~CL~p 800 (1570)
.|+..
T Consensus 426 ~CY~C 430 (468)
T KOG1701|consen 426 NCYKC 430 (468)
T ss_pred cceeh
Confidence 88874
No 131
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=58.12 E-value=34 Score=39.75 Aligned_cols=81 Identities=10% Similarity=0.073 Sum_probs=60.7
Q ss_pred EEEEe-eCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchh--hHHHHhhhccC
Q 000398 915 TAILE-RGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIA--ELMHTWTRVFG 991 (1570)
Q Consensus 915 taVLE-k~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~--ea~~tWT~KFG 991 (1570)
.++++ .+|++|+++.+-.+ .+.+.....|+.++|++.+-.-.|+-.+.+.+.+-|++.+=+=... +-+-.+..+||
T Consensus 197 l~~a~~~~g~~va~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G 275 (330)
T TIGR03019 197 VLTVRLGDGVVASAVLSFYF-RDEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWG 275 (330)
T ss_pred EEEEEeCCCCEEEEEEEEEe-CCEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCC
Confidence 34456 68999988777444 4445556889999999999999999999999999999998764322 23344666788
Q ss_pred ceecc
Q 000398 992 FTSLE 996 (1570)
Q Consensus 992 F~~I~ 996 (1570)
|.+++
T Consensus 276 ~~~~~ 280 (330)
T TIGR03019 276 FEPQP 280 (330)
T ss_pred Ceecc
Confidence 88765
No 132
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=56.84 E-value=15 Score=40.82 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=41.6
Q ss_pred eeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhh
Q 000398 937 LAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWT 987 (1570)
Q Consensus 937 lAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT 987 (1570)
+||+=|.|++++.+|.||++.| .++--.|+.|||.--|--.++.+..-.+
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~ 134 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVE 134 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHH
Confidence 6999999999999999999976 6999999999998777655555555444
No 133
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=55.77 E-value=17 Score=43.03 Aligned_cols=60 Identities=18% Similarity=0.069 Sum_probs=35.2
Q ss_pred cccEEEEEe--eCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcC
Q 000398 911 SGFYTAILE--RGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLK 970 (1570)
Q Consensus 911 rGFYtaVLE--k~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLG 970 (1570)
--||++.-. .+.++||-=+=--+..+---|--|-|.|.|||+|+|+.|++.-=.+.+.-|
T Consensus 127 FlFYVl~e~d~~g~h~vGYFSKEK~s~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 127 FLFYVMTEVDDHGSHIVGYFSKEKVSAEDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred eEEEEEEEecCCCcEEEEEeceeccccCCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 345554322 234565533322222122336678999999999999999986555444333
No 134
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=54.67 E-value=56 Score=34.95 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=55.0
Q ss_pred EEEeeCCeEEEEEEE--EeecC-----ceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhh
Q 000398 916 AILERGDEIISAASI--RFHGT-----QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTR 988 (1570)
Q Consensus 916 aVLEk~geVVSaAsL--RI~G~-----dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~ 988 (1570)
+++..+|.+||-|.+ ++|-. .++|+=.| ..|||.||||...++|-.+.+.+ -+-.+||--..|+++|.
T Consensus 40 ~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi---~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK- 114 (143)
T COG5628 40 WLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIV---RKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWK- 114 (143)
T ss_pred eEEEECCceeeeeeeecccCCCCcccccchheEee---ehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHH-
Confidence 344578889988765 22222 45665444 47999999999999998875432 23456778888999999
Q ss_pred ccCcee-ccHHHHHhhh
Q 000398 989 VFGFTS-LEESLKQEMR 1004 (1570)
Q Consensus 989 KFGF~~-I~~sek~~l~ 1004 (1570)
+|-++. |..++++..+
T Consensus 115 ~~~~t~~i~~E~r~d~~ 131 (143)
T COG5628 115 RVAETYPVVEEDRQDAR 131 (143)
T ss_pred hhhcccccchhhhhccc
Confidence 444443 3344555443
No 135
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=54.66 E-value=4.8 Score=49.49 Aligned_cols=40 Identities=35% Similarity=0.528 Sum_probs=26.6
Q ss_pred ccccceeccCC----CcEeeCCCCCccCCCcCCCCCCCCCCCCCCCcc
Q 000398 718 DDTCGICGDGG----DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1570)
Q Consensus 718 DD~C~VCGDGG----dLLcCDgCprAFH~~CL~pp~VPeGdW~Cp~C~ 761 (1570)
-.+|.||-.-- ..|.=-.|..+||..|+... ++-.||-|+
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w----~~~scpvcR 218 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW----WDSSCPVCR 218 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhc----ccCcChhhh
Confidence 45899996422 25555668999999999653 233466555
No 136
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=51.17 E-value=10 Score=48.16 Aligned_cols=26 Identities=35% Similarity=0.747 Sum_probs=21.0
Q ss_pred ccccccceeccCCCcEeeCCCCCccC
Q 000398 716 PNDDTCGICGDGGDLICCDGCPSTFH 741 (1570)
Q Consensus 716 ~NDD~C~VCGDGGdLLcCDgCprAFH 741 (1570)
+-.+.|..|+..|+.+.|+.|+.-++
T Consensus 66 ~v~~~c~~c~G~gkv~~c~~cG~~~~ 91 (715)
T COG1107 66 TVYDTCPECGGTGKVLTCDICGDIIV 91 (715)
T ss_pred EEEeecccCCCceeEEeeccccceec
Confidence 34567888888888888999888776
No 137
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=49.07 E-value=67 Score=35.52 Aligned_cols=65 Identities=11% Similarity=0.213 Sum_probs=49.6
Q ss_pred cccEEEEEe--eCCeEEE-----EEEEEeecC--ceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEE
Q 000398 911 SGFYTAILE--RGDEIIS-----AASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI 975 (1570)
Q Consensus 911 rGFYtaVLE--k~geVVS-----aAsLRI~G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLv 975 (1570)
.-.|.+.+. ..+++|| -+.+||++. +.+||=|+-++..+|.+++.=.|+.+|=+.+..-||-.-+
T Consensus 75 ~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAv 148 (162)
T PF01233_consen 75 KKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAV 148 (162)
T ss_dssp -GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEE
T ss_pred ccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeee
Confidence 333444454 3577777 467899888 8999999999999999999999999999998888875544
No 138
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=47.09 E-value=26 Score=36.92 Aligned_cols=62 Identities=23% Similarity=0.368 Sum_probs=38.6
Q ss_pred eeccccccChhHHHHHHHHHHHhhcCccEEEecch-hhHHHHhhhccCceeccHHHHHhhhccceEeecC
Q 000398 945 TRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAI-AELMHTWTRVFGFTSLEESLKQEMRSLNMLVFPG 1013 (1570)
Q Consensus 945 Tr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~-~ea~~tWT~KFGF~~I~~sek~~l~~~~ll~FpG 1013 (1570)
|.+..||+|+|++|++.+.+.- .+....+-+.-. +-++.+..+.+|-+..-+ ...|+++|+|
T Consensus 54 Vhes~QR~G~Gk~LF~~ML~~e-~~~p~~~a~DrPS~Kll~Fl~Khy~L~~~ip------Q~NNFVVf~~ 116 (120)
T PF05301_consen 54 VHESRQRRGYGKRLFDHMLQEE-NVSPHQLAIDRPSPKLLSFLKKHYGLQRYIP------QSNNFVVFEG 116 (120)
T ss_pred EEeceeccCchHHHHHHHHHHc-CCCcccceecCCcHHHHHHHHHhcCCCcCCC------CCccEEEehH
Confidence 7889999999999999887652 222233332222 235566665666554322 3567888875
No 139
>PTZ00064 histone acetyltransferase; Provisional
Probab=46.75 E-value=22 Score=44.80 Aligned_cols=82 Identities=21% Similarity=0.162 Sum_probs=45.7
Q ss_pred hhhHhHhhhhhccCccccCCCCCccccceeeccCCCCCcccccccEEEEEe--eCCeEEEEEEEEeecCceeEEeeeeee
Q 000398 869 KLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILE--RGDEIISAASIRFHGTQLAEMPFIGTR 946 (1570)
Q Consensus 869 KLAvALtIMhECFdPIVD~rSGrDLIpdMVYNrGSnFkRLnfrGFYtaVLE--k~geVVSaAsLRI~G~dlAEmPlVATr 946 (1570)
..+.-|-.|--.|+ |.+| +.| +.+.--||++.-. .+-++||-=+=-....+---|--|-|.
T Consensus 331 lYCQNLCLLAKLFL---DhKT-------LYy-------DVdpFlFYVLtE~D~~G~HiVGYFSKEK~S~~~nNLACILtL 393 (552)
T PTZ00064 331 GYAENLCYLAKLFL---DHKT-------LQY-------DVEPFLFYIVTEVDEEGCHIVGYFSKEKVSLLHYNLACILTL 393 (552)
T ss_pred hHHHHHHHHHHHhc---cCcc-------ccc-------cccceEEEEEEEecCCCcEEEEEecccccCcccCceEEEEec
Confidence 34555666666776 5443 222 2333345554321 234666533322222122246678999
Q ss_pred ccccccChhHHHHHHHHHHHh
Q 000398 947 HIYRRQGMCRRLFCALESALC 967 (1570)
Q Consensus 947 ~~yRrQGmgR~Lv~aIE~~L~ 967 (1570)
|.|||+|||+.|++.==.+-+
T Consensus 394 PpyQRKGYGklLIdfSYeLSr 414 (552)
T PTZ00064 394 PCYQRKGYGKLLVDLSYKLSL 414 (552)
T ss_pred chhhhcchhhhhhhhhhhhhh
Confidence 999999999999976544433
No 140
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=46.35 E-value=1.4e+02 Score=33.62 Aligned_cols=92 Identities=8% Similarity=0.085 Sum_probs=65.7
Q ss_pred CCCCCccccc-ccEEEEEeeCCeEEEEEEEE--------------ee-------cCceeEEeeeeeecccc---ccC---
Q 000398 902 GSNFNRLNYS-GFYTAILERGDEIISAASIR--------------FH-------GTQLAEMPFIGTRHIYR---RQG--- 953 (1570)
Q Consensus 902 GSnFkRLnfr-GFYtaVLEk~geVVSaAsLR--------------I~-------G~dlAEmPlVATr~~yR---rQG--- 953 (1570)
|-++..+|.. -.|.+.+..+|+|||++-|- ++ ..++.|+==+++.+.++ +.+
T Consensus 42 g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~ 121 (207)
T PRK13834 42 GEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLH 121 (207)
T ss_pred CcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccC
Confidence 4556666643 45777777888999977541 11 34788998899988763 222
Q ss_pred -hhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCcee
Q 000398 954 -MCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTS 994 (1570)
Q Consensus 954 -mgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~ 994 (1570)
+...|+.++-+.+...|+++++.-..+-+..++ .++||..
T Consensus 122 ~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l-~r~G~~~ 162 (207)
T PRK13834 122 EATLTMFAGIIEWSMANGYTEIVTATDLRFERIL-ARAGWPM 162 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH-HHcCCCe
Confidence 557899999999999999999977666666655 4778654
No 141
>PLN03239 histone acetyltransferase; Provisional
Probab=45.74 E-value=25 Score=42.51 Aligned_cols=29 Identities=21% Similarity=0.049 Sum_probs=23.3
Q ss_pred EEeeeeeeccccccChhHHHHHHHHHHHh
Q 000398 939 EMPFIGTRHIYRRQGMCRRLFCALESALC 967 (1570)
Q Consensus 939 EmPlVATr~~yRrQGmgR~Lv~aIE~~L~ 967 (1570)
-|--|-|.|.|||+|+|+.|++--=.+.+
T Consensus 215 NLaCIltLPpyQrkGyG~lLI~fSYeLSr 243 (351)
T PLN03239 215 NLACILTFPAHQRKGYGRFLIAFSYELSK 243 (351)
T ss_pred ceEEEEecChhhhcchhhhhHhhhhHhhh
Confidence 36788999999999999999976544433
No 142
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=44.97 E-value=20 Score=44.52 Aligned_cols=79 Identities=22% Similarity=0.255 Sum_probs=44.7
Q ss_pred hhhHhHhhhhhccCccccCCCCCccccceeeccCCCCCcccccccEEEEEe--eCCeEEEEEEEEeecCceeEEeeeeee
Q 000398 869 KLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILE--RGDEIISAASIRFHGTQLAEMPFIGTR 946 (1570)
Q Consensus 869 KLAvALtIMhECFdPIVD~rSGrDLIpdMVYNrGSnFkRLnfrGFYtaVLE--k~geVVSaAsLRI~G~dlAEmPlVATr 946 (1570)
..+.-|-.|--.|+ |.+| +.| +.+.--||++.-. .+-++||-=+==-+-.+---|--|-|.
T Consensus 253 ~yCqnLcLlaKLFL---dhKt-------lyy-------dV~~FlFYvl~e~d~~g~h~vGyFSKEk~s~~~~NLaCIltl 315 (450)
T PLN00104 253 VYCQNLCYLAKLFL---DHKT-------LYY-------DVDLFLFYVLCECDDRGCHMVGYFSKEKHSEEDYNLACILTL 315 (450)
T ss_pred hHHHHHHHHHHHhh---cCcc-------eec-------cccceEEEEEEEecCCCcEEEEEecccccCcCCCceEEEEec
Confidence 34556666666776 4443 222 2233345554321 344666643322222222246788999
Q ss_pred ccccccChhHHHHHHHHH
Q 000398 947 HIYRRQGMCRRLFCALES 964 (1570)
Q Consensus 947 ~~yRrQGmgR~Lv~aIE~ 964 (1570)
|.|||+|||+.|++--=.
T Consensus 316 P~yQrkGyG~~LI~~SYe 333 (450)
T PLN00104 316 PPYQRKGYGKFLIAFSYE 333 (450)
T ss_pred chhhhcchhheehhheeh
Confidence 999999999999875433
No 143
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=44.79 E-value=21 Score=47.39 Aligned_cols=51 Identities=33% Similarity=0.897 Sum_probs=40.5
Q ss_pred ccccceeccCCC--cEeeCCCCCccCCCcCCCC--CCCCCCCCCCCccccccCCC
Q 000398 718 DDTCGICGDGGD--LICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTCKFCGLA 768 (1570)
Q Consensus 718 DD~C~VCGDGGd--LLcCDgCprAFH~~CL~pp--~VPeGdW~Cp~C~Ck~CG~~ 768 (1570)
...|..|..+.. ++.|+.|...||.+|+.++ .+++++|.|+.|...-|...
T Consensus 155 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (904)
T KOG1246|consen 155 YPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKP 209 (904)
T ss_pred chhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCc
Confidence 457888876653 4499999999999999975 48899999999987655433
No 144
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=44.67 E-value=13 Score=47.31 Aligned_cols=57 Identities=25% Similarity=0.550 Sum_probs=35.9
Q ss_pred CCCCCcc-----ccccCCCCCCCCCCCCCCCCceecCCcchhhhhhhccccccccccCCCCCccceeCccchhhHHHH
Q 000398 755 WHCPNCT-----CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSEHL 827 (1570)
Q Consensus 755 W~Cp~C~-----Ck~CG~~g~dseeeD~~Sv~~LL~CDQCERaYHv~CL~p~d~~pl~~~psg~WFCsqeCqeI~E~L 827 (1570)
-.|..|. |.+|..... .-++.......|..|...||..|+... -.||..|.++..+-
T Consensus 502 ~~C~lC~~~gfiCe~Cq~~~i----iyPF~~~~~~rC~~C~avfH~~C~~r~------------s~~CPrC~R~q~r~ 563 (580)
T KOG1829|consen 502 KECDLCTGKGFICELCQHNDI----IYPFETRNTRRCSTCLAVFHKKCLRRK------------SPCCPRCERRQKRA 563 (580)
T ss_pred hhchhhccCeeeeeeccCCCc----ccccccccceeHHHHHHHHHHHHHhcc------------CCCCCchHHHHHHh
Confidence 3477776 777732221 122223456899999999999999842 12346887766543
No 145
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=44.04 E-value=14 Score=34.23 Aligned_cols=34 Identities=29% Similarity=0.849 Sum_probs=26.5
Q ss_pred CccccccCCCCCCCCCCCCCCCCceecCCcchhhhhhhcccc
Q 000398 759 NCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQE 800 (1570)
Q Consensus 759 ~C~Ck~CG~~g~dseeeD~~Sv~~LL~CDQCERaYHv~CL~p 800 (1570)
.++|..|+..-.+ ...++.|..|...||..|...
T Consensus 5 ~~~C~~Cg~~~~~--------~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKD--------GDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccC--------CCCEEECCCCCCcccHHHHhh
Confidence 4568889876542 124899999999999999875
No 146
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=43.34 E-value=21 Score=43.82 Aligned_cols=72 Identities=22% Similarity=0.336 Sum_probs=42.3
Q ss_pred chhhHhHhhhhhccCccccCCCCCccccceeeccCCCCCcccccccEEEEEeeCCeEEEEEEEEeecCc--eeE---Eee
Q 000398 868 SKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILERGDEIISAASIRFHGTQ--LAE---MPF 942 (1570)
Q Consensus 868 SKLAvALtIMhECFdPIVD~rSGrDLIpdMVYNrGSnFkRLnfrGFYtaVLEk~geVVSaAsLRI~G~d--lAE---mPl 942 (1570)
...+.-|=.|--+|. |.. ++| +|-..|--.||...|..= + +=+|-.+ -+| |--
T Consensus 208 k~YCQnLCLlaKLFL---dhK--------TLY--------yDvdpFlFYVlte~d~~G-~--VGYFSKEK~s~~~yNlaC 265 (396)
T KOG2747|consen 208 KLYCQNLCLLAKLFL---DHK--------TLY--------YDVDPFLFYVLTECDSYG-C--VGYFSKEKESSENYNLAC 265 (396)
T ss_pred hHHHHHHHHHHHHHh---cCc--------eeE--------EeccceEEEEEEecCCcc-e--eeeeccccccccccceee
Confidence 345556666666776 433 244 244444444555444332 2 2234442 223 778
Q ss_pred eeeeccccccChhHHHHHH
Q 000398 943 IGTRHIYRRQGMCRRLFCA 961 (1570)
Q Consensus 943 VATr~~yRrQGmgR~Lv~a 961 (1570)
|=|.|.|||+|||+.|++-
T Consensus 266 ILtLPpyQRkGYGklLIdF 284 (396)
T KOG2747|consen 266 ILTLPPYQRKGYGKLLIDF 284 (396)
T ss_pred eeecChhhhcccchhhhhh
Confidence 8999999999999999863
No 147
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=41.00 E-value=1.4e+02 Score=36.87 Aligned_cols=80 Identities=13% Similarity=0.277 Sum_probs=59.5
Q ss_pred cccccEEEEEeeCC--eEEE-----EEEEEeecC--ceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCcc------E
Q 000398 909 NYSGFYTAILERGD--EIIS-----AASIRFHGT--QLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVE------K 973 (1570)
Q Consensus 909 nfrGFYtaVLEk~g--eVVS-----aAsLRI~G~--dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVe------r 973 (1570)
++.--|.+.+.... .+|+ -++|||.+. ..|||-|+-++..-|.+++.=.|+.+|-+...--||- -
T Consensus 130 g~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaG 209 (421)
T KOG2779|consen 130 GWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAG 209 (421)
T ss_pred CCccceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcc
Confidence 34445666666444 7766 357999998 8999999999999999999999999998865544443 2
Q ss_pred EEecchhhHHHHhhh
Q 000398 974 LIIPAIAELMHTWTR 988 (1570)
Q Consensus 974 LvLPA~~ea~~tWT~ 988 (1570)
++||+--..-.-|..
T Consensus 210 vvLp~PVstcRY~HR 224 (421)
T KOG2779|consen 210 VVLPKPVSTCRYWHR 224 (421)
T ss_pred eeeccccchhhhhhc
Confidence 566766666666764
No 148
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=40.40 E-value=52 Score=36.24 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=38.7
Q ss_pred eEEeeeeeeccccccChhHHHHHHHHHHHh-hcCccEEEecch---hhHHHHhhhccCceecc
Q 000398 938 AEMPFIGTRHIYRRQGMCRRLFCALESALC-SLKVEKLIIPAI---AELMHTWTRVFGFTSLE 996 (1570)
Q Consensus 938 AEmPlVATr~~yRrQGmgR~Lv~aIE~~L~-sLGVerLvLPA~---~ea~~tWT~KFGF~~I~ 996 (1570)
+|+-+.---|..||+|+|+-.|.++...+. .|++.+..+-.. ...+.+.. ||+|..+-
T Consensus 108 gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFk-k~~f~q~~ 169 (185)
T KOG4135|consen 108 GEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFK-KFLFTQVF 169 (185)
T ss_pred eeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHH-Hhhheeee
Confidence 444445556899999999999999888754 356666665542 23344444 78877653
No 149
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=39.02 E-value=14 Score=37.59 Aligned_cols=21 Identities=38% Similarity=1.175 Sum_probs=15.9
Q ss_pred CCCCCCCCCCcc----ccccCCCCC
Q 000398 750 LPPGDWHCPNCT----CKFCGLAGE 770 (1570)
Q Consensus 750 VPeGdW~Cp~C~----Ck~CG~~g~ 770 (1570)
+.+..|.||.|+ |.+|.....
T Consensus 57 ~~~~~W~CP~CrgiCnCs~Crrk~g 81 (105)
T PF10497_consen 57 LEDPNWKCPKCRGICNCSFCRRKRG 81 (105)
T ss_pred hcCCceECCCCCCeeCCHhhhccCC
Confidence 466889999987 777766543
No 150
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=38.88 E-value=27 Score=43.65 Aligned_cols=30 Identities=27% Similarity=0.764 Sum_probs=21.0
Q ss_pred CcEeeCCCCCccCCCcCCCCCCCCCCCCCCCcc
Q 000398 729 DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1570)
Q Consensus 729 dLLcCDgCprAFH~~CL~pp~VPeGdW~Cp~C~ 761 (1570)
+|++|..|..-=..+|...+ -..||||.|.
T Consensus 4 ~L~fC~~C~~irc~~c~~~E---i~~~yCp~CL 33 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPRCVSEE---IDSYYCPNCL 33 (483)
T ss_pred cceecccccccCChhhcccc---cceeECcccc
Confidence 57888888766566666543 2469999886
No 151
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=38.25 E-value=48 Score=33.68 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=32.5
Q ss_pred EEEEEEeec-CceeEEeeeeeeccccccChhHHHHHHHHHHH
Q 000398 926 SAASIRFHG-TQLAEMPFIGTRHIYRRQGMCRRLFCALESAL 966 (1570)
Q Consensus 926 SaAsLRI~G-~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L 966 (1570)
+||.+.--. ..++-|=.+|+.+..|++|+++.|+++|-+..
T Consensus 22 ~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 22 AAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 344443222 36889999999999999999999999998874
No 152
>PRK00756 acyltransferase NodA; Provisional
Probab=37.81 E-value=46 Score=37.15 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=34.1
Q ss_pred eeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEE
Q 000398 937 LAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI 975 (1570)
Q Consensus 937 lAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLv 975 (1570)
+||+=|.|++++.+|+||+..+ .++--.|+.|||.--|
T Consensus 85 VaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~F 122 (196)
T PRK00756 85 VAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAF 122 (196)
T ss_pred EEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeec
Confidence 6999999999999999999877 6899999999997544
No 153
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=37.78 E-value=11 Score=42.76 Aligned_cols=63 Identities=27% Similarity=0.585 Sum_probs=36.5
Q ss_pred CCcEeeCCCCCcc--------CCCcCCCCCCCCCCCCCCCccccccCCCCCCCCC----CCCCCCCceecCCcchhhhhh
Q 000398 728 GDLICCDGCPSTF--------HQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAE----GDDTTTSALLPCAMCEKKYHK 795 (1570)
Q Consensus 728 GdLLcCDgCprAF--------H~~CL~pp~VPeGdW~Cp~C~Ck~CG~~g~dsee----eD~~Sv~~LL~CDQCERaYHv 795 (1570)
++...|+.|.++| |+.|...- ....|.+||+.-.+.-. ..+.+...-+.|.+|+++|-.
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~v---------kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftq 185 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDV---------KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQ 185 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHH---------HHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHh
Confidence 4455566666555 66666431 12237788876543210 011122346899999999999
Q ss_pred hccc
Q 000398 796 LCMQ 799 (1570)
Q Consensus 796 ~CL~ 799 (1570)
.|.-
T Consensus 186 rcsl 189 (267)
T KOG3576|consen 186 RCSL 189 (267)
T ss_pred hccH
Confidence 9954
No 154
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=37.21 E-value=30 Score=45.09 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=36.6
Q ss_pred CCccccceeeccCCCCCcccccccEEEEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHH
Q 000398 890 GINLIHNVLYNSGSNFNRLNYSGFYTAILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESAL 966 (1570)
Q Consensus 890 GrDLIpdMVYNrGSnFkRLnfrGFYtaVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L 966 (1570)
+-|+||=.|- ..|.+-+|-++|- |.|--|||+|+|++-|||.+-|+-+.+.+
T Consensus 592 ~GdlIpW~vs---eQf~D~~F~~l~G----------------------aRIVRIAvhP~y~~MGYGsrAvqLL~~y~ 643 (1011)
T KOG2036|consen 592 AGDLIPWTVS---EQFQDEDFPKLSG----------------------ARIVRIAVHPEYQKMGYGSRAVQLLTDYF 643 (1011)
T ss_pred cCCccceehh---hhhcccchhcccC----------------------ceEEEEEeccchhccCccHHHHHHHHHHH
Confidence 3588886662 3466666655543 33445799999999999999888777643
No 155
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=36.29 E-value=23 Score=39.26 Aligned_cols=34 Identities=35% Similarity=0.904 Sum_probs=25.4
Q ss_pred ccccCCCCCCCCCCCCCCCCceecCCcchhhhhhhccccc
Q 000398 762 CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEM 801 (1570)
Q Consensus 762 Ck~CG~~g~dseeeD~~Sv~~LL~CDQCERaYHv~CL~p~ 801 (1570)
|..|+..+.+ ...+.|++|.-|.-.||..||.+.
T Consensus 2 C~~C~~~g~~------~~kG~Lv~CQGCs~sYHk~CLG~R 35 (175)
T PF15446_consen 2 CDTCGYEGDD------RNKGPLVYCQGCSSSYHKACLGPR 35 (175)
T ss_pred cccccCCCCC------ccCCCeEEcCccChHHHhhhcCCc
Confidence 5567654432 234579999999999999999863
No 156
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=35.15 E-value=25 Score=42.05 Aligned_cols=21 Identities=38% Similarity=0.923 Sum_probs=18.3
Q ss_pred CceecCCcchhhhh-hhccccc
Q 000398 781 SALLPCAMCEKKYH-KLCMQEM 801 (1570)
Q Consensus 781 ~~LL~CDQCERaYH-v~CL~p~ 801 (1570)
..|++|-.|+-||| .+|++..
T Consensus 146 ~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 146 GEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred ceeeeEEeccchhcccccCccc
Confidence 57999999999999 8898853
No 157
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=33.07 E-value=19 Score=35.62 Aligned_cols=30 Identities=40% Similarity=1.005 Sum_probs=25.9
Q ss_pred ccccceecc-CCCcEeeCC--CCCccCCCcCCC
Q 000398 718 DDTCGICGD-GGDLICCDG--CPSTFHQSCLDI 747 (1570)
Q Consensus 718 DD~C~VCGD-GGdLLcCDg--CprAFH~~CL~p 747 (1570)
...|.+|+. .|-.+-|.. |..+||..|...
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHH
Confidence 568999998 577999997 999999999854
No 158
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=32.87 E-value=33 Score=38.23 Aligned_cols=37 Identities=35% Similarity=0.943 Sum_probs=0.0
Q ss_pred cccccceeccCC--------CcEeeCCCCCccCCCcCCCCCCCCCCCCCCCc
Q 000398 717 NDDTCGICGDGG--------DLICCDGCPSTFHQSCLDIQMLPPGDWHCPNC 760 (1570)
Q Consensus 717 NDD~C~VCGDGG--------dLLcCDgCprAFH~~CL~pp~VPeGdW~Cp~C 760 (1570)
...+|.+|.+.+ ....|..|...||..|..... ||.|
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~~~-------CpkC 195 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRKKS-------CPKC 195 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCCCC-------CCCc
No 159
>PRK04023 DNA polymerase II large subunit; Validated
Probab=31.98 E-value=29 Score=46.77 Aligned_cols=34 Identities=24% Similarity=0.607 Sum_probs=25.8
Q ss_pred cccccceeccCCCcEeeCCCCCccCCCcCCCCCCCCCCCCCCCcc
Q 000398 717 NDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1570)
Q Consensus 717 NDD~C~VCGDGGdLLcCDgCprAFH~~CL~pp~VPeGdW~Cp~C~ 761 (1570)
....|..||.......|..|+.. +...|+||.|.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~-----------Te~i~fCP~CG 658 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTH-----------TEPVYRCPRCG 658 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCC-----------CCcceeCcccc
Confidence 45689999988777888888764 34458888884
No 160
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=30.26 E-value=42 Score=32.46 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=22.4
Q ss_pred EeeeeeeccccccChhHHHHHHHHHHH
Q 000398 940 MPFIGTRHIYRRQGMCRRLFCALESAL 966 (1570)
Q Consensus 940 mPlVATr~~yRrQGmgR~Lv~aIE~~L 966 (1570)
|.-|=|.+.+|||||.++|++++-...
T Consensus 8 I~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 8 ISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred eEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 344558899999999999999998763
No 161
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=30.09 E-value=16 Score=36.48 Aligned_cols=40 Identities=30% Similarity=0.685 Sum_probs=23.2
Q ss_pred cceeccCCC---cEeeCCCCCccCCCcCCCCC-CCCCCCCCCCcc
Q 000398 721 CGICGDGGD---LICCDGCPSTFHQSCLDIQM-LPPGDWHCPNCT 761 (1570)
Q Consensus 721 C~VCGDGGd---LLcCDgCprAFH~~CL~pp~-VPeGdW~Cp~C~ 761 (1570)
|..|..+|+ ++++ .|...||..|+..-. -....=.||.|+
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~~~~~CPmCR 78 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQSSKGQCPMCR 78 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHccccCCCCCCCcC
Confidence 333444554 4433 499999999986422 112234788776
No 162
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=29.16 E-value=25 Score=41.60 Aligned_cols=31 Identities=32% Similarity=0.671 Sum_probs=26.3
Q ss_pred CeecCCCCceeecceeeeccCCc-ccccccee
Q 000398 649 GIHCGCCSKILTVSKFEIHAGSK-LRQPFQNI 679 (1570)
Q Consensus 649 GI~CsCC~KvFSpSeFEaHAGsk-~RrPYqNI 679 (1570)
.|.|-|=...|+|.+|..|||.. ...|.++|
T Consensus 252 ~i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 252 RIVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 38999999999999999999985 56676666
No 163
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=28.77 E-value=39 Score=42.87 Aligned_cols=45 Identities=22% Similarity=0.339 Sum_probs=37.7
Q ss_pred cccccceeccCCCcEeeCCCCCccCCCcCCCC-CCC--CCCCCCCCcc
Q 000398 717 NDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ-MLP--PGDWHCPNCT 761 (1570)
Q Consensus 717 NDD~C~VCGDGGdLLcCDgCprAFH~~CL~pp-~VP--eGdW~Cp~C~ 761 (1570)
.+.+|+-|.-.|..+.|..|-+.||..|+.+. ..+ ...|.|+.|.
T Consensus 59 ~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~ 106 (588)
T KOG3612|consen 59 IDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPY 106 (588)
T ss_pred CCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccc
Confidence 45689999999999999999999999999874 233 3579999876
No 164
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=26.52 E-value=59 Score=41.72 Aligned_cols=10 Identities=20% Similarity=0.132 Sum_probs=6.1
Q ss_pred ceeecceeee
Q 000398 657 KILTVSKFEI 666 (1570)
Q Consensus 657 KvFSpSeFEa 666 (1570)
+.|++.+|.+
T Consensus 85 ktyh~~cf~c 94 (670)
T KOG1044|consen 85 KTYHPKCFSC 94 (670)
T ss_pred ceecccccee
Confidence 5666766643
No 165
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=26.37 E-value=31 Score=32.85 Aligned_cols=31 Identities=32% Similarity=0.785 Sum_probs=26.5
Q ss_pred cccccceeccC-CCcEeeCC--CCCccCCCcCCC
Q 000398 717 NDDTCGICGDG-GDLICCDG--CPSTFHQSCLDI 747 (1570)
Q Consensus 717 NDD~C~VCGDG-GdLLcCDg--CprAFH~~CL~p 747 (1570)
....|.+|+.. |-.+-|.. |...||..|.-.
T Consensus 35 ~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 34689999998 88899985 999999999864
No 166
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=26.21 E-value=1.6e+02 Score=32.21 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=42.2
Q ss_pred ccccccChhHHHHHHHHHHHhhcCccEEEecch----hhHHHHhhhccCceeccHH
Q 000398 947 HIYRRQGMCRRLFCALESALCSLKVEKLIIPAI----AELMHTWTRVFGFTSLEES 998 (1570)
Q Consensus 947 ~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~----~ea~~tWT~KFGF~~I~~s 998 (1570)
...||.|++|+|..-+-..+..-|-.+|+|-.- .++-......|||+++-+.
T Consensus 94 ~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a 149 (167)
T COG3818 94 SRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQA 149 (167)
T ss_pred ecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccce
Confidence 346899999999999999999999999887432 3466677779999998763
No 167
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=26.18 E-value=88 Score=30.46 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=28.4
Q ss_pred HhcCeeeeeccCCC---CCccccEeeCCCCceeeehHHH
Q 000398 404 VEAGWTIDYRPRKN---RDYLDAVYINPTGTAYWSIIKA 439 (1570)
Q Consensus 404 l~aGWtid~rpR~~---r~Y~DaVYi~p~G~~yWSi~kA 439 (1570)
+-.||+=..+.|+. +-=.|.+|++|.|+..=|.-.-
T Consensus 8 lp~GW~R~~~~r~~g~~~~~~dV~Y~sP~GkklRs~~ev 46 (77)
T smart00391 8 LPCGWRRETKQRKSGRSAGKFDVYYISPCGKKLRSKSEL 46 (77)
T ss_pred CCCCcEEEEEEecCCCCCCcccEEEECCCCCeeeCHHHH
Confidence 56799999988873 4568999999999988665443
No 168
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=25.09 E-value=4.5e+02 Score=29.21 Aligned_cols=83 Identities=11% Similarity=0.095 Sum_probs=57.7
Q ss_pred cccEEEEEeeCCeEEEEEEEEe--------------e-------cCceeEEeeeeeeccccc------cChhHHHHHHHH
Q 000398 911 SGFYTAILERGDEIISAASIRF--------------H-------GTQLAEMPFIGTRHIYRR------QGMCRRLFCALE 963 (1570)
Q Consensus 911 rGFYtaVLEk~geVVSaAsLRI--------------~-------G~dlAEmPlVATr~~yRr------QGmgR~Lv~aIE 963 (1570)
.-.|.+++.. |+|+|++-|.- + +.++-|+==+++.+..++ .-+...|+.++-
T Consensus 44 ~~~ylv~~~~-g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~ 122 (182)
T PF00765_consen 44 DAVYLVALDD-GRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMV 122 (182)
T ss_dssp T-EEEEEEET-TEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHH
T ss_pred CCeEEEEEEC-CEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHH
Confidence 3457777654 99999876641 1 246778877888777432 236789999999
Q ss_pred HHHhhcCccEEEecchhhHHHHhhhccCceec
Q 000398 964 SALCSLKVEKLIIPAIAELMHTWTRVFGFTSL 995 (1570)
Q Consensus 964 ~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I 995 (1570)
+.+.+.|++.++.-+.+-...++. ++||...
T Consensus 123 e~a~~~gi~~~v~V~~~~~~r~l~-r~G~~~~ 153 (182)
T PF00765_consen 123 EFALSNGIRHIVGVVDPAMERILR-RAGWPVR 153 (182)
T ss_dssp HHHHCTT-SEEEEEEEHHHHHHHH-HCT-EEE
T ss_pred HHHHHCCCCEEEEEEChHHHHHHH-HcCCceE
Confidence 999999999999777777666666 7888653
No 169
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=24.52 E-value=34 Score=32.61 Aligned_cols=30 Identities=27% Similarity=0.824 Sum_probs=22.1
Q ss_pred cccccCCCCCCCCCCCCCCCCceecCCc--chhhhhhhccccc
Q 000398 761 TCKFCGLAGEDDAEGDDTTTSALLPCAM--CEKKYHKLCMQEM 801 (1570)
Q Consensus 761 ~Ck~CG~~g~dseeeD~~Sv~~LL~CDQ--CERaYHv~CL~p~ 801 (1570)
.|.+|+...+ ..+.|.. |.+.||+.|....
T Consensus 38 ~C~~C~~~~G-----------a~i~C~~~~C~~~fH~~CA~~~ 69 (90)
T PF13771_consen 38 KCSICKKKGG-----------ACIGCSHPGCSRSFHVPCARKA 69 (90)
T ss_pred CCcCCCCCCC-----------eEEEEeCCCCCcEEChHHHccC
Confidence 3667876521 3688865 9999999998864
No 170
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=24.49 E-value=2.8e+02 Score=29.49 Aligned_cols=59 Identities=8% Similarity=-0.014 Sum_probs=49.5
Q ss_pred EEEeeCCeEEEEEEEEeecCceeEEeeeeeeccccccChhHHHHHHHHHHHhhcCccEEE
Q 000398 916 AILERGDEIISAASIRFHGTQLAEMPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLI 975 (1570)
Q Consensus 916 aVLEk~geVVSaAsLRI~G~dlAEmPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLv 975 (1570)
+-+..+|++|+||.+.+...-+.-|-++= .|+|....+|...+-.-.+.++.+|.+.+.
T Consensus 42 ~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 42 LEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred EEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 33458999999999998877776666553 688999999999888888899999999998
No 171
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.07 E-value=33 Score=43.81 Aligned_cols=35 Identities=20% Similarity=0.528 Sum_probs=24.2
Q ss_pred CCCCCCcc-----------ccccCCCCCCCCCCCCCCCCceecCCcchhhhhhhccc
Q 000398 754 DWHCPNCT-----------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQ 799 (1570)
Q Consensus 754 dW~Cp~C~-----------Ck~CG~~g~dseeeD~~Sv~~LL~CDQCERaYHv~CL~ 799 (1570)
.|||+.|. |..|+...... =.|+.|++.|++.++.
T Consensus 126 ~~Yc~~~e~fl~dr~v~g~cp~cg~~~arG-----------D~Ce~Cg~~~~P~~l~ 171 (558)
T COG0143 126 GLYCVSCERFLPDRYVEGTCPKCGGEDARG-----------DQCENCGRTLDPTELI 171 (558)
T ss_pred eeEcccccccccchheeccCCCcCccccCc-----------chhhhccCcCCchhcC
Confidence 47777775 77776433221 2699999999998864
No 172
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=22.55 E-value=42 Score=40.83 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.8
Q ss_pred eEEeeeeeeccccccChhHHHHH
Q 000398 938 AEMPFIGTRHIYRRQGMCRRLFC 960 (1570)
Q Consensus 938 AEmPlVATr~~yRrQGmgR~Lv~ 960 (1570)
--+--|-|.|.|||+|+|..|++
T Consensus 263 yNLaCILtLP~yQRrGYG~lLId 285 (395)
T COG5027 263 YNLACILTLPPYQRRGYGKLLID 285 (395)
T ss_pred CceEEEEecChhHhcccceEeee
Confidence 44677889999999999999875
No 173
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=22.43 E-value=85 Score=38.35 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=38.6
Q ss_pred EEEEeecCceeEEeeeee-eccccccChhHHHHHHHHHHHhhc-CccEEEecchhhHHHHhhhccCceec
Q 000398 928 ASIRFHGTQLAEMPFIGT-RHIYRRQGMCRRLFCALESALCSL-KVEKLIIPAIAELMHTWTRVFGFTSL 995 (1570)
Q Consensus 928 AsLRI~G~dlAEmPlVAT-r~~yRrQGmgR~Lv~aIE~~L~sL-GVerLvLPA~~ea~~tWT~KFGF~~I 995 (1570)
--|||+|.-+ |+-+- -..||+||+|.+||++.|+.++.- |-.++-+-+--...+.| .||||..-
T Consensus 480 RELHVYGs~v---pv~~rDp~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY-~klGY~Ld 545 (554)
T KOG2535|consen 480 RELHVYGSVV---PVHSRDPTKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYY-RKLGYELD 545 (554)
T ss_pred eeeeecceee---ecccCCchhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHH-HhhCeeec
Confidence 3456666532 22221 246999999999999999998753 44444333322333333 38888753
No 174
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=22.40 E-value=46 Score=40.12 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=40.2
Q ss_pred ceecCCcchhhhhhhc--cccccccccCCCCCccceeCccchhhHHHHHhHhccccccccccceec
Q 000398 782 ALLPCAMCEKKYHKLC--MQEMDALSDNLTGLVTSFCGRKCQELSEHLQKYLGVKHELEAGLSWSL 845 (1570)
Q Consensus 782 ~LL~CDQCERaYHv~C--L~p~d~~pl~~~psg~WFCsqeCqeI~E~LQKLLGVk~eLEsGfSWtL 845 (1570)
.+..|+.|..+||..| ++.. .....+...|+| ..|.....+++..=+..-.....++|.+
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~---~~e~p~~~~~~c-~~c~~~~~~~~~~~~l~~~~~~~~~~~~ 135 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTA---EKEAPKEDPKVC-DECKEAQDGMSESDGLSCVCRQDDSELL 135 (345)
T ss_pred hhhccccccccccccccccCch---hhcCCccccccc-cccchhhhhhhhhccceeeccccccccc
Confidence 4789999999999999 5531 222335578999 8999988888765333333334444443
No 175
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=21.87 E-value=2e+02 Score=29.48 Aligned_cols=71 Identities=13% Similarity=0.063 Sum_probs=48.2
Q ss_pred EeeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhh----ccCceeccHHHHHhhhccceEe
Q 000398 940 MPFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTR----VFGFTSLEESLKQEMRSLNMLV 1010 (1570)
Q Consensus 940 mPlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~----KFGF~~I~~sek~~l~~~~ll~ 1010 (1570)
|..+.+.-..|..|..+.|++++.+.|...|++.=++.-..-.++++.. .+.+..--......+.....++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI 75 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGII 75 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEE
Confidence 5677788888999999999999999999999888776555434445442 2233333345566666655433
No 176
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=21.61 E-value=56 Score=25.06 Aligned_cols=9 Identities=78% Similarity=2.169 Sum_probs=7.3
Q ss_pred CCCCCCCcc
Q 000398 753 GDWHCPNCT 761 (1570)
Q Consensus 753 GdW~Cp~C~ 761 (1570)
|+|.|+.|.
T Consensus 1 g~W~C~~C~ 9 (26)
T smart00547 1 GDWECPACT 9 (26)
T ss_pred CcccCCCCC
Confidence 579999885
No 177
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.27 E-value=48 Score=43.58 Aligned_cols=42 Identities=24% Similarity=0.635 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCcc------ccccCCCCCCCCCCCCCCCCceecCCcchhhhhhhcccc
Q 000398 749 MLPPGDWHCPNCT------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQE 800 (1570)
Q Consensus 749 ~VPeGdW~Cp~C~------Ck~CG~~g~dseeeD~~Sv~~LL~CDQCERaYHv~CL~p 800 (1570)
++-.+.|+|..|. |.+|+..-. +..+.|.+|++.=|..|+..
T Consensus 763 ~~~~~~~~c~rc~s~a~~~CtVC~~vi~----------G~~~~c~~C~H~gH~sh~~s 810 (839)
T KOG0269|consen 763 MVLTKLWQCDRCESRASAKCTVCDLVIR----------GVDVWCQVCGHGGHDSHLKS 810 (839)
T ss_pred cccccceeechHHHHhhcCceeecceee----------eeEeecccccccccHHHHHH
Confidence 3444559999996 888875443 35789999999999999885
No 178
>PF07943 PBP5_C: Penicillin-binding protein 5, C-terminal domain; InterPro: IPR012907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains proteins that are annotated as penicillin-binding protein 5 and 6. These belong to MEROPS peptidase family S11 (D-Ala-D-Ala carboxypeptidase A family, clan SE). Penicillin-binding protein 5 expressed by Escherichia coli functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (IPR001967 from INTERPRO) is the catalytic domain. The C-terminal domain, this entry, is organised into a sandwich of two anti-parallel beta-sheets, and has a relatively hydrophobic surface as compared to the N-terminal domain. Its precise function is unknown; it may mediate interactions with other cell wall-synthesising enzymes, thus allowing the protein to be recruited to areas of active cell wall synthesis. It may also function as a linker domain that positions the active site in the catalytic domain closer to the peptidoglycan layer, to allow it to interact with cell wall peptides []. ; GO: 0009002 serine-type D-Ala-D-Ala carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3J_A 3MFD_B 1XP4_D 3MZD_A 1NZU_A 1NJ4_A 1Z6F_A 3MZF_A 1NZO_A 3MZE_A ....
Probab=20.57 E-value=1.1e+02 Score=28.87 Aligned_cols=28 Identities=11% Similarity=0.521 Sum_probs=24.2
Q ss_pred eCCeEEEEEEEEeecCceeEEeeeeeec
Q 000398 920 RGDEIISAASIRFHGTQLAEMPFIGTRH 947 (1570)
Q Consensus 920 k~geVVSaAsLRI~G~dlAEmPlVATr~ 947 (1570)
.-|++||.+.+.+-|..++++||+|...
T Consensus 61 ~kG~~vG~~~v~~~~~~i~~vpL~a~~~ 88 (91)
T PF07943_consen 61 KKGQVVGTLTVYLDGKLIGEVPLVASED 88 (91)
T ss_dssp GTTSEEEEEEEEETTEEEEEEEEEESS-
T ss_pred cCCCEEEEEEEEECCEEEEEEEEEECCc
Confidence 4589999999988888999999999865
No 179
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=20.46 E-value=70 Score=41.67 Aligned_cols=43 Identities=26% Similarity=0.711 Sum_probs=0.0
Q ss_pred cEeeCCCCCccCCCcCCCCCCCCCCCCCCCcc-------ccccCCCCCCCCCCCCCCCCceecCCcchhh
Q 000398 730 LICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT-------CKFCGLAGEDDAEGDDTTTSALLPCAMCEKK 792 (1570)
Q Consensus 730 LLcCDgCprAFH~~CL~pp~VPeGdW~Cp~C~-------Ck~CG~~g~dseeeD~~Sv~~LL~CDQCERa 792 (1570)
|+.|..|+.. +|.+.=||+.|- |..||....... -+|..|+..
T Consensus 1 M~~Cp~Cg~~----------n~~~akFC~~CG~~l~~~~Cp~CG~~~~~~~----------~fC~~CG~~ 50 (645)
T PRK14559 1 MLICPQCQFE----------NPNNNRFCQKCGTSLTHKPCPQCGTEVPVDE----------AHCPNCGAE 50 (645)
T ss_pred CCcCCCCCCc----------CCCCCccccccCCCCCCCcCCCCCCCCCccc----------ccccccCCc
No 180
>PLN03086 PRLI-interacting factor K; Provisional
Probab=20.43 E-value=32 Score=43.99 Aligned_cols=100 Identities=24% Similarity=0.650 Sum_probs=0.0
Q ss_pred eecCCCCceeecceeeeccCCccccccceeeccCCcccceeccccccccccccccCCcccccCCCCccccccce--ec--
Q 000398 650 IHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGI--CG-- 725 (1570)
Q Consensus 650 I~CsCC~KvFSpSeFEaHAGsk~RrPYqNIyLedGrSLLqCqIqAWnkqe~sEk~Gf~~V~vdgdd~NDD~C~V--CG-- 725 (1570)
+.|+.|...+....|+.|. ..+.|.+| .|.. |+
T Consensus 408 V~C~NC~~~i~l~~l~lHe---~~C~r~~V----------------------------------------~Cp~~~Cg~v 444 (567)
T PLN03086 408 VECRNCKHYIPSRSIALHE---AYCSRHNV----------------------------------------VCPHDGCGIV 444 (567)
T ss_pred EECCCCCCccchhHHHHHH---hhCCCcce----------------------------------------eCCcccccce
Q ss_pred ----cCCCcEeeCCCCCccCCCcCCCCC-CCCCCCCCCCcc----------------------ccccCCCCC--------
Q 000398 726 ----DGGDLICCDGCPSTFHQSCLDIQM-LPPGDWHCPNCT----------------------CKFCGLAGE-------- 770 (1570)
Q Consensus 726 ----DGGdLLcCDgCprAFH~~CL~pp~-VPeGdW~Cp~C~----------------------Ck~CG~~g~-------- 770 (1570)
+..+-+.|+.|+..|...=+..-. +-.....|+ |. |.+|+....
T Consensus 445 ~~r~el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~Cp-Cg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~ 523 (567)
T PLN03086 445 LRVEEAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCP-CGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDV 523 (567)
T ss_pred eeccccccCccCCCCCCccchHHHHHHHHhcCCCccCC-CCCCcchhHHHhhhhccCCCCceeCCCCCCccccCccccch
Q ss_pred -----CCCCCCCCCCCceecCCcchhhh
Q 000398 771 -----DDAEGDDTTTSALLPCAMCEKKY 793 (1570)
Q Consensus 771 -----dseeeD~~Sv~~LL~CDQCERaY 793 (1570)
.-..-...-......|+.|.+.+
T Consensus 524 ~d~~s~Lt~HE~~CG~rt~~C~~Cgk~V 551 (567)
T PLN03086 524 RDRLRGMSEHESICGSRTAPCDSCGRSV 551 (567)
T ss_pred hhhhhhHHHHHHhcCCcceEccccCCee
No 181
>KOG3581 consensus Creatine kinases [Energy production and conversion]
Probab=20.42 E-value=1.1e+02 Score=36.68 Aligned_cols=136 Identities=21% Similarity=0.206 Sum_probs=84.4
Q ss_pred ccchhhHhHhhhhhccCccccCCC-C---CccccceeeccCCCCCcccccccEEEEEeeCCeEEEEEEEEe-ecCceeEE
Q 000398 866 CNSKLAVALNVMDECFLPIVDRRS-G---INLIHNVLYNSGSNFNRLNYSGFYTAILERGDEIISAASIRF-HGTQLAEM 940 (1570)
Q Consensus 866 cnSKLAvALtIMhECFdPIVD~rS-G---rDLIpdMVYNrGSnFkRLnfrGFYtaVLEk~geVVSaAsLRI-~G~dlAEm 940 (1570)
+..--+.|-++|-.-|+|||.-+- | .+.-|.+=++..+.|..+|+.|-|+. +-|| .|+.+--.
T Consensus 72 ~yApD~EaY~vFadLFDpiIedyH~Gf~p~~~qp~tdlg~~~~~~~ldpd~~yi~------------StRvRcGRSi~Gy 139 (363)
T KOG3581|consen 72 VYAPDAEAYTVFADLFDPIIEDYHGGFKPTDKQPATDLGKTKEFGGLDPDGKYIL------------STRVRCGRSIKGY 139 (363)
T ss_pred eecCcHHHHHHHHHHhchHHHHHhcCCCccccCCCccCCcccccCCCCCCCceeE------------eeeeccccccCCC
Confidence 445567799999999999987543 4 46677777778889999999999986 2233 35555555
Q ss_pred eeeeeeccccccChhHHHHHHHHHHHhhcCccEEEecchhhHHHHhhhccCceeccHHHHHhhhccceEeecCccceeec
Q 000398 941 PFIGTRHIYRRQGMCRRLFCALESALCSLKVEKLIIPAIAELMHTWTRVFGFTSLEESLKQEMRSLNMLVFPGIDMLQKL 1020 (1570)
Q Consensus 941 PlVATr~~yRrQGmgR~Lv~aIE~~L~sLGVerLvLPA~~ea~~tWT~KFGF~~I~~sek~~l~~~~ll~FpGTsmLQK~ 1020 (1570)
||=--..+-.+.-|=.....++..+-.+|.=++ +-.+-|++.+++++-.-.+|.=.|.-+||=.
T Consensus 140 ~fnPclt~~~y~emE~kv~~a~s~l~gelkGkY----------------ypL~gM~~~~QqqLI~DHFLFkegdr~L~aa 203 (363)
T KOG3581|consen 140 PFNPCLTEANYREMESKVKEALSSLTGELKGKY----------------YPLTGMTEAEQQQLIDDHFLFKEGDRLLQAA 203 (363)
T ss_pred cCCccccHHHHHHHHHHHHHHHHhcchhhccce----------------eccccccHHHHHhhhhhhhhhhccCHHHHhc
Confidence 554333333333333333333333222222221 3456777877777776566655687788777
Q ss_pred cccccCCcC
Q 000398 1021 LLEQEGIKE 1029 (1570)
Q Consensus 1021 L~~~~~~d~ 1029 (1570)
=...-|++.
T Consensus 204 ~a~r~WP~g 212 (363)
T KOG3581|consen 204 GAARDWPDG 212 (363)
T ss_pred cccccCCcc
Confidence 666667764
No 182
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=20.38 E-value=7.7 Score=32.77 Aligned_cols=40 Identities=33% Similarity=0.824 Sum_probs=23.9
Q ss_pred cccceeccC---CC-cEeeCCCCCccCCCcCCCCCCCCCCCCCCCcc
Q 000398 719 DTCGICGDG---GD-LICCDGCPSTFHQSCLDIQMLPPGDWHCPNCT 761 (1570)
Q Consensus 719 D~C~VCGDG---Gd-LLcCDgCprAFH~~CL~pp~VPeGdW~Cp~C~ 761 (1570)
|.|.+|.+. ++ ++... |+..||..|+.....- ...||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHH--SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHh--CCcCCccC
Confidence 468888752 33 44444 9999999998743211 13677764
No 183
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=20.21 E-value=2.2e+02 Score=34.87 Aligned_cols=26 Identities=23% Similarity=0.083 Sum_probs=21.6
Q ss_pred ceeEEeeeeeeccccccChhHHHHHH
Q 000398 936 QLAEMPFIGTRHIYRRQGMCRRLFCA 961 (1570)
Q Consensus 936 dlAEmPlVATr~~yRrQGmgR~Lv~a 961 (1570)
...||-.+=.+++||+-|.|+.|-.+
T Consensus 120 G~sEl~tLfL~p~~R~~~~G~lLSr~ 145 (342)
T PF04958_consen 120 GCSELCTLFLDPDYRGGGNGRLLSRS 145 (342)
T ss_dssp TSEEEEEEEE-GGGTTSHHHHHHHHH
T ss_pred CCeeeEEEEECHHHcCCchHHHHHHH
Confidence 45799999999999999999988654
No 184
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=20.15 E-value=2.3e+02 Score=37.07 Aligned_cols=39 Identities=23% Similarity=0.557 Sum_probs=28.3
Q ss_pred HHHHHHHH-HHHhcCeeeeeccCCCCCccccEeeCCCCceeeehHHHHHHHHHHh
Q 000398 394 KLRERIRG-MLVEAGWTIDYRPRKNRDYLDAVYINPTGTAYWSIIKAYDALTKQL 447 (1570)
Q Consensus 394 ~lr~~I~~-~Ll~aGWtid~rpR~~r~Y~DaVYi~p~G~~yWSi~kAY~~~~~~~ 447 (1570)
.+.|+||+ .|.+.|+.|+=| |.|++.|...-+ +.|+++.
T Consensus 518 ~~~D~iRd~~L~~~Gi~l~D~--------------~~g~~~~~~~~~-~~~~~~~ 557 (651)
T PTZ00399 518 QLCDKLRDEWLPNLGIRIEDK--------------PDGPSVWKLDDK-EELQREK 557 (651)
T ss_pred HHHHHHHHHHHHHCCCEEEEc--------------CCCceEEEECCH-HHHHHHH
Confidence 56899999 699999999866 457777876533 3454443
No 185
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.03 E-value=41 Score=44.62 Aligned_cols=40 Identities=30% Similarity=0.681 Sum_probs=32.3
Q ss_pred ccccceeccCCCcEeeC-CCCCccCCCcCCCCCCCCCCCCCCCccc
Q 000398 718 DDTCGICGDGGDLICCD-GCPSTFHQSCLDIQMLPPGDWHCPNCTC 762 (1570)
Q Consensus 718 DD~C~VCGDGGdLLcCD-gCprAFH~~CL~pp~VPeGdW~Cp~C~C 762 (1570)
...|..|+..=++.... .|+.+||+.|+. +++--||.|.-
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc-----cCcccCCccch
Confidence 35899999877776666 599999999997 66778998863
Done!