Query 000398
Match_columns 1570
No_of_seqs 344 out of 1641
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 16:01:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000398.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_178-182//hhsearch_pdb/000398hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 130.2 6.9 93 715-821 4-102 (111)
2 2kwj_A Zinc finger protein DPF 1.0 1 1 127.4 4.0 93 719-825 2-110 (114)
3 4gne_A Histone-lysine N-methyl 1.0 1 1 126.0 5.6 91 712-819 9-101 (107)
4 3ask_A E3 ubiquitin-protein li 1.0 1 1 124.8 8.5 134 609-761 66-223 (226)
5 3v43_A Histone acetyltransfera 1.0 1 1 121.3 3.1 92 717-821 4-110 (112)
6 2lbm_A Transcriptional regulat 1.0 1 1 105.4 1.4 99 642-762 9-116 (142)
7 3u5n_A E3 ubiquitin-protein li 1.0 1 1 102.7 3.6 50 713-762 2-53 (207)
8 3o36_A Transcription intermedi 1.0 1 1 100.0 4.5 48 715-762 1-50 (184)
9 1fp0_A KAP-1 corepressor; PHD 1.0 1 1 94.1 5.5 50 713-762 20-71 (88)
10 2ro1_A Transcription intermedi 1.0 1 1 93.7 4.0 46 718-763 2-49 (189)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=130.18 Aligned_cols=93 Identities=35% Similarity=0.924 Sum_probs=77.3
Q ss_pred CCCCCCCCEECCCCCC---EEECCCCCCCCCCCCCCCC--CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 7655424200667984---8608999945888688887--999997797753-222478899998898889874012774
Q 000398 715 DPNDDTCGICGDGGDL---ICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTTSALLPCAM 788 (1570)
Q Consensus 715 d~NDD~C~VCGDGGdL---LcCDgCPsAFH~~CLdlp~--VPeGdW~Cp~C~-CkiCG~~g~dseeed~~Svs~LL~CdQ 788 (1570)
..|++.|.+|+++|++ |+|+.|+++||+.||+++. ++.+.|+|+.|. |.+|+..+.+ ..|+.|++
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~---------~~ll~Cd~ 74 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGED---------SKMLVCDT 74 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCC---------TTEEECSS
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCEEECCC
T ss_conf 899799957899888758859999997739677088655445668658767826234765898---------77658999
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCH
Q ss_conf 224321000000122323779973604086356
Q 000398 789 CEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1570)
Q Consensus 789 CERaYHv~CLk~~d~l~~e~~p~g~WFCskeCk 821 (1570)
|.++||..|+.+ ++...|.+.||| ..|.
T Consensus 75 C~~~yH~~Cl~p----pl~~~P~g~W~C-~~C~ 102 (111)
T 2ysm_A 75 CDKGYHTFCLQP----VMKSVPTNGWKC-KNCR 102 (111)
T ss_dssp SCCEEEGGGSSS----CCSSCCSSCCCC-HHHH
T ss_pred CCCHHHHHHCCC----CCCCCCCCCCCC-CCCC
T ss_conf 980886986587----656688988299-2882
No 2
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=127.35 Aligned_cols=93 Identities=28% Similarity=0.711 Sum_probs=74.6
Q ss_pred CCCCEECC----------CCCCEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42420066----------7984860899994588868888-----799999779775-3222478899998898889874
Q 000398 719 DTCGICGD----------GGDLICCDGCPSTFHQSCLDIQ-----MLPPGDWHCPNC-TCKFCGLAGEDDAEGDDTTTSA 782 (1570)
Q Consensus 719 D~C~VCGD----------GGdLLcCDgCPsAFH~~CLdlp-----~VPeGdW~Cp~C-~CkiCG~~g~dseeed~~Svs~ 782 (1570)
+.|.+|.. +++||+|+.|+++||+.||+++ .+|.+.|+|+.| .|.+|+....+ ..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~---------~~ 72 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSEND---------DQ 72 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTT---------TT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---------CC
T ss_conf 808658897534446799999869298998323213878466431168775175662733756346888---------74
Q ss_pred EECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCHHHHH
Q ss_conf 0127742243210000001223237799736040863564699
Q 000398 783 LLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSE 825 (1570)
Q Consensus 783 LL~CdQCERaYHv~CLk~~d~l~~e~~p~g~WFCskeCkeI~e 825 (1570)
|+.|+.|+++||..|+.+ ++...|.+.|||. .|...+.
T Consensus 73 ll~Cd~C~~~yH~~Cl~p----pl~~~P~g~W~C~-~C~~~~~ 110 (114)
T 2kwj_A 73 LLFCDDCDRGYHMYCLNP----PVAEPPEGSWSCH-LCWELLK 110 (114)
T ss_dssp EEECSSSCCEEETTTSSS----CCSSCCSSCCCCH-HHHHHHH
T ss_pred EEECCCCCCCCCCCCCCC----CCCCCCCCCEECC-CCCCHHH
T ss_conf 577489894102504598----7467889781992-4103442
No 3
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=1.00 E-value=1 Score=126.00 Aligned_cols=91 Identities=31% Similarity=0.738 Sum_probs=77.5
Q ss_pred CCCCCCCCCCCEECCCCCCEEEC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 88876554242006679848608--9999458886888879999977977532224788999988988898740127742
Q 000398 712 DGDDPNDDTCGICGDGGDLICCD--GCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAEGDDTTTSALLPCAMC 789 (1570)
Q Consensus 712 dgdd~NDD~C~VCGDGGdLLcCD--gCPsAFH~~CLdlp~VPeGdW~Cp~C~CkiCG~~g~dseeed~~Svs~LL~CdQC 789 (1570)
+....++++|.+|+++|+||+|| .||++||+.||++..+|.|.|+||.|.|.+|+.... +.|..|
T Consensus 9 ~~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k~~~-------------~~C~~C 75 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAAV-------------SFCEFC 75 (107)
T ss_dssp -CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCSBCC-------------EECSSS
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC-------------CCCCCC
T ss_conf 8868897999847997847577999999265225186875799888898999881779898-------------674778
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 243210000001223237799736040863
Q 000398 790 EKKYHKLCMQEMDALSDNLTGLVTSFCGRK 819 (1570)
Q Consensus 790 ERaYHv~CLk~~d~l~~e~~p~g~WFCske 819 (1570)
+++||..|+... +...+...|+|+.+
T Consensus 76 p~sfC~~c~~g~----l~~~~~~~~~c~~~ 101 (107)
T 4gne_A 76 PHSFCKDHEKGA----LVPSALEGRLCCSE 101 (107)
T ss_dssp SCEECTTTCTTS----CEECTTTTCEECTT
T ss_pred CCCHHHHCCCCC----CEECCCCCCEECCC
T ss_conf 710112115873----11027889666677
No 4
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=124.80 Aligned_cols=134 Identities=27% Similarity=0.512 Sum_probs=81.6
Q ss_pred CCCCHHHHHHCCCCEECCCEEEEEECCCCCEEEEEEEECCCEECCCCCCEEECCEEEECCCCCCCCCCCEEECCCCCCCC
Q ss_conf 98413444411492000464998404564203321462498010788833424200112488444665016606994210
Q 000398 609 GKLTLLSWLIDSGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLL 688 (1570)
Q Consensus 609 ~kRTVLSWLIDtG~V~~~~KV~Yvnrk~~kvlLeG~It~dGI~CsCC~KvfSpSeFEaHAGsk~RrPYqNIyLedGkSLL 688 (1570)
+.|+.+.| ..+.+. .+.|++++-..+..+|++..+-| ....-..+.+.++++|+|+ |.+|.
T Consensus 66 rar~~~~~----~~l~~g-~~vm~nyn~~~~~~~G~~y~~~I-------------~~~~~~r~~~~~~a~i~l~-g~sl~ 126 (226)
T 3ask_A 66 RARTIIKW----QDLEVG-QVVMLNYNPDNPKERGFWYDAEI-------------SRKRETRTARELYANVVLG-DDSLN 126 (226)
T ss_dssp CCCCBCCG----GGCCTT-CEEEEEECTTSTTSCCEEEEEEE-------------EEEEECSSCEEEEEEEECS-SSEEE
T ss_pred CCCCCCCC----CCCCCC-CEEEEECCCCCCCCCCCEEEHHH-------------HHHHHCCCCCCEEEEEEEC-CCCCC
T ss_conf 30024780----015647-29998346688553673542554-------------3134023312224688766-87543
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCC--------------CCC----CCCCCCEECC---CCCCEEECCCCCCCCCCCCCC
Q ss_conf 1000012233222235875556688--------------876----5542420066---798486089999458886888
Q 000398 689 QCQIDAWNKLKESESIGFESVDVDG--------------DDP----NDDTCGICGD---GGDLICCDGCPSTFHQSCLDI 747 (1570)
Q Consensus 689 eCqIqAwnkqe~sEk~G~~sV~vdg--------------dd~----NDD~C~VCGD---GGdLLcCDgCPsAFH~~CLdl 747 (1570)
.|++.+......++..+......+. ++. .++.|.+|+. ++.||+||+|+++||++||+|
T Consensus 127 ~c~i~f~~e~~~ie~~~~~~~~~~~~~~r~~~~~C~~c~~~~~w~C~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~P 206 (226)
T 3ask_A 127 DCRIIFVDEVFKIERPGEGSPMVDNPMRRKSGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDP 206 (226)
T ss_dssp EEEESCTTCCBCCCCSSSSCCCCSCCCCCCCSCCCTTTTTCTTSCCTTTSCSSSCCCCC--CCEECSSSCCEECSCC--C
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCC
T ss_conf 41578731433211335553333463334578644323578677668888868899799987688389994100756788
Q ss_pred C--CCCCC-CCCCCCCC
Q ss_conf 8--79999-97797753
Q 000398 748 Q--MLPPG-DWHCPNCT 761 (1570)
Q Consensus 748 p--~VPeG-dW~Cp~C~ 761 (1570)
| .+|.| +|+|+.|.
T Consensus 207 PL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 207 PLSSVPSEDEWYCPECR 223 (226)
T ss_dssp CCCSCCSSSCCCCGGGC
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 74569899887893874
No 5
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=121.31 Aligned_cols=92 Identities=26% Similarity=0.652 Sum_probs=73.1
Q ss_pred CCCCCCEECC---------CCCCEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5542420066---------7984860899994588868888-----799999779775-322247889999889888987
Q 000398 717 NDDTCGICGD---------GGDLICCDGCPSTFHQSCLDIQ-----MLPPGDWHCPNC-TCKFCGLAGEDDAEGDDTTTS 781 (1570)
Q Consensus 717 NDD~C~VCGD---------GGdLLcCDgCPsAFH~~CLdlp-----~VPeGdW~Cp~C-~CkiCG~~g~dseeed~~Svs 781 (1570)
+..+|.+|.. +++||.|++|+++||.+||++. .++.+.|+|+.| .|.+|+..+.+. .
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~--------~ 75 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNA--------D 75 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTT--------C
T ss_pred CCCCCCCCCCCHHHCCCCCCHHCEEHHHCCCCCCCCHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------C
T ss_conf 67613103893342768991116375344998897035388899987542465301177544666868885--------6
Q ss_pred CEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCH
Q ss_conf 4012774224321000000122323779973604086356
Q 000398 782 ALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (1570)
Q Consensus 782 ~LL~CdQCERaYHv~CLk~~d~l~~e~~p~g~WFCskeCk 821 (1570)
.|+.|+.|+++||..|+.+ ++...|.+.||| ..|+
T Consensus 76 ~ll~Cd~C~~~yH~~Cl~p----~l~~~P~~~W~C-~~C~ 110 (112)
T 3v43_A 76 NMLFCDSCDRGFHMECCDP----PLTRMPKGMWIC-QICR 110 (112)
T ss_dssp CCEECTTTCCEECGGGCSS----CCSSCCSSCCCC-TTTS
T ss_pred CEEECCCCCCEEECCCCCC----CCCCCCCCCEEC-CCCC
T ss_conf 5687489989156635899----989899988579-7878
No 6
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=1.00 E-value=1 Score=105.38 Aligned_cols=99 Identities=24% Similarity=0.553 Sum_probs=66.3
Q ss_pred EEEEECCCEECCCCCCEEECCEEEECCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21462498010788833424200112488444665016606994210100001223322223587555668887655424
Q 000398 642 EGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTC 721 (1570)
Q Consensus 642 eG~It~dGI~CsCC~KvfSpSeFEaHAGsk~RrPYqNIyLedGkSLLeCqIqAwnkqe~sEk~G~~sV~vdgdd~NDD~C 721 (1570)
+|+. ++|.|.+|...+++.++ .-..+.|+..+.+ ...|...... .++ ...++.++++|
T Consensus 9 ~~~~--~~i~Ct~Cg~~~~~~q~----~~~~~HPll~v~~-----C~~C~~~y~~-------~~~----~~d~Dg~~d~C 66 (142)
T 2lbm_A 9 DGLH--GIVSCTACGQQVNHFQK----DSIYRHPSLQVLI-----CKNCFKYYMS-------DDI----SRDSDGMDEQC 66 (142)
T ss_dssp SSCC--CCCBCTTTCSBSTTTCS----SSEEEETTTTEEE-----EHHHHHHHHH-------SCC----CBCTTSCBCSC
T ss_pred CCCC--CCCEECCCCCCCCCCCC----CCHHCCCCCCCCC-----CHHHHHHHHC-------CCC----EECCCCCCCEE
T ss_conf 6775--79885489986565456----6321298756642-----4778988723-------781----31688887800
Q ss_pred CEECCCCCCEEECCCCCCCCCCCCCCCC---------CCCCCCCCCCCCC
Q ss_conf 2006679848608999945888688887---------9999977977532
Q 000398 722 GICGDGGDLICCDGCPSTFHQSCLDIQM---------LPPGDWHCPNCTC 762 (1570)
Q Consensus 722 ~VCGDGGdLLcCDgCPsAFH~~CLdlp~---------VPeGdW~Cp~C~C 762 (1570)
.+|++||+|+|||.||++||..|+.++. .|.++|+|+.|.+
T Consensus 67 ~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 67 RWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCCCEEECCCCCCEEEHHHCCCCCCHHHHHHCCCCCCCCEEECCCC
T ss_conf 00399984786899897312745488887366654246899988212668
No 7
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=102.66 Aligned_cols=50 Identities=48% Similarity=1.242 Sum_probs=44.8
Q ss_pred CCCCCCCCCCEECCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 887655424200667984860899994588868888--79999977977532
Q 000398 713 GDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTC 762 (1570)
Q Consensus 713 gdd~NDD~C~VCGDGGdLLcCDgCPsAFH~~CLdlp--~VPeGdW~Cp~C~C 762 (1570)
.++.+++.|.+|+++|+||+||+|+++||..|++|+ .+|.|+|+|+.|.-
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEEC
T ss_conf 8788889898889999367769999843871589998888998878684268
No 8
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=1.00 E-value=1 Score=100.04 Aligned_cols=48 Identities=44% Similarity=1.203 Sum_probs=43.5
Q ss_pred CCCCCCCCEECCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 7655424200667984860899994588868888--79999977977532
Q 000398 715 DPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTC 762 (1570)
Q Consensus 715 d~NDD~C~VCGDGGdLLcCDgCPsAFH~~CLdlp--~VPeGdW~Cp~C~C 762 (1570)
++|+++|.+|+++|+||+||+|+++||..|+.|+ .+|.|+|+|+.|..
T Consensus 1 ~~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 1 SPNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50 (184)
T ss_dssp CCSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 99999541179999056629999530811368987879998878925568
No 9
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=94.10 Aligned_cols=50 Identities=30% Similarity=0.769 Sum_probs=44.9
Q ss_pred CCCCCCCCCCEECCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 887655424200667984860899994588868888--79999977977532
Q 000398 713 GDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTC 762 (1570)
Q Consensus 713 gdd~NDD~C~VCGDGGdLLcCDgCPsAFH~~CLdlp--~VPeGdW~Cp~C~C 762 (1570)
..+.+++.|.+|+++|+||+||.|+++||++|+.|+ .+|.|+|+|+.|..
T Consensus 20 ~~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 20 TLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3388998183769999778899999724163289897878699767726448
No 10
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=93.66 Aligned_cols=46 Identities=30% Similarity=0.821 Sum_probs=42.0
Q ss_pred CCCCCEECCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 5424200667984860899994588868888--799999779775322
Q 000398 718 DDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTCK 763 (1570)
Q Consensus 718 DD~C~VCGDGGdLLcCDgCPsAFH~~CLdlp--~VPeGdW~Cp~C~Ck 763 (1570)
++.|.+|+++|+|++||+|+++||.+|+.|+ .+|.|+|+|+.|...
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 882764799994568999983331022898756689987889270477
Done!