Query 000400
Match_columns 1566
No_of_seqs 334 out of 1003
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 07:16:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 99.8 4.9E-19 1.1E-23 232.8 17.0 141 1304-1497 514-659 (1163)
2 TIGR02169 SMC_prok_A chromosom 99.8 3.6E-18 7.8E-23 222.4 19.7 140 1304-1495 520-660 (1164)
3 PF13589 HATPase_c_3: Histidin 99.7 8.2E-18 1.8E-22 172.0 7.4 132 158-313 1-137 (137)
4 KOG0996 Structural maintenance 99.7 4.4E-16 9.5E-21 195.1 20.3 177 1303-1532 614-800 (1293)
5 KOG0933 Structural maintenance 99.6 1.2E-15 2.5E-20 188.8 14.0 257 1214-1554 452-717 (1174)
6 KOG0018 Structural maintenance 99.6 1.4E-14 3.1E-19 180.9 18.6 141 1304-1496 501-646 (1141)
7 PRK14083 HSP90 family protein; 99.5 2.2E-13 4.7E-18 168.7 20.2 295 144-527 5-318 (601)
8 PRK05218 heat shock protein 90 99.5 5.6E-13 1.2E-17 165.9 23.3 133 142-278 6-155 (613)
9 KOG0964 Structural maintenance 99.5 3.1E-13 6.8E-18 167.1 16.8 138 1304-1496 521-661 (1200)
10 PF06470 SMC_hinge: SMC protei 99.4 1.3E-12 2.8E-17 129.2 9.9 117 1305-1471 2-119 (120)
11 PTZ00130 heat shock protein 90 99.3 5.9E-12 1.3E-16 158.4 12.1 178 119-321 47-240 (814)
12 COG0323 MutL DNA mismatch repa 99.3 1.2E-11 2.7E-16 154.5 10.0 120 142-279 5-128 (638)
13 COG0326 HtpG Molecular chapero 99.2 3.2E-11 7E-16 147.7 11.4 156 142-322 7-179 (623)
14 TIGR00585 mutl DNA mismatch re 99.2 9.5E-11 2.1E-15 135.3 11.5 118 143-276 5-125 (312)
15 PRK00095 mutL DNA mismatch rep 99.1 3.7E-10 7.9E-15 141.4 12.3 119 143-278 5-126 (617)
16 PTZ00272 heat shock protein 83 99.0 8.2E-10 1.8E-14 139.0 10.7 130 142-278 5-150 (701)
17 COG1389 DNA topoisomerase VI, 98.8 2.4E-08 5.1E-13 118.4 10.3 108 158-278 35-149 (538)
18 KOG1979 DNA mismatch repair pr 98.8 3.1E-08 6.8E-13 119.5 11.3 157 152-346 19-187 (694)
19 TIGR02168 SMC_prok_B chromosom 98.7 2.8E-07 6.1E-12 121.1 18.7 143 1304-1494 518-665 (1179)
20 KOG1978 DNA mismatch repair pr 98.5 3E-07 6.6E-12 113.5 9.6 105 157-279 18-125 (672)
21 PRK14868 DNA topoisomerase VI 98.4 2.2E-06 4.8E-11 108.1 13.6 108 159-279 46-161 (795)
22 KOG1977 DNA mismatch repair pr 98.3 4.2E-07 9.2E-12 111.1 4.3 103 152-271 14-117 (1142)
23 PRK04184 DNA topoisomerase VI 98.2 9.1E-06 2E-10 100.5 14.0 106 160-278 37-151 (535)
24 TIGR01052 top6b DNA topoisomer 98.2 6.8E-06 1.5E-10 100.7 12.0 108 159-279 28-142 (488)
25 KOG0020 Endoplasmic reticulum 98.2 3.2E-06 6.9E-11 100.7 8.1 125 142-269 75-217 (785)
26 PRK05559 DNA topoisomerase IV 98.0 1.4E-05 3E-10 101.2 8.5 104 157-270 35-142 (631)
27 KOG0019 Molecular chaperone (H 97.9 1.3E-05 2.9E-10 98.2 6.6 132 138-276 33-179 (656)
28 PRK14867 DNA topoisomerase VI 97.9 8.9E-05 1.9E-09 93.7 13.7 107 159-278 36-150 (659)
29 TIGR01055 parE_Gneg DNA topois 97.9 2E-05 4.4E-10 99.5 7.6 96 158-270 29-135 (625)
30 smart00433 TOP2c Topoisomerase 97.8 3.5E-05 7.6E-10 97.0 7.6 100 162-270 4-106 (594)
31 TIGR01059 gyrB DNA gyrase, B s 97.8 6.1E-05 1.3E-09 95.9 9.8 103 158-270 29-135 (654)
32 PRK05644 gyrB DNA gyrase subun 97.8 6.3E-05 1.4E-09 95.4 9.7 109 158-278 36-148 (638)
33 PF02518 HATPase_c: Histidine 97.7 0.00018 4E-09 70.1 9.9 99 160-278 6-109 (111)
34 PRK14939 gyrB DNA gyrase subun 97.6 8.6E-05 1.9E-09 95.3 7.8 91 158-270 36-142 (756)
35 TIGR01058 parE_Gpos DNA topois 96.9 0.0015 3.3E-08 83.2 7.1 106 158-271 33-140 (637)
36 PLN03128 DNA topoisomerase 2; 96.9 0.0051 1.1E-07 82.5 12.3 102 159-266 52-155 (1135)
37 cd00075 HATPase_c Histidine ki 96.5 0.016 3.5E-07 53.0 9.4 88 160-266 1-93 (103)
38 smart00387 HATPase_c Histidine 96.3 0.033 7.1E-07 51.8 10.3 49 160-211 6-56 (111)
39 PTZ00108 DNA topoisomerase 2-l 96.3 0.009 1.9E-07 81.2 8.6 131 138-274 34-171 (1388)
40 KOG0250 DNA repair protein RAD 96.2 0.085 1.8E-06 69.7 16.1 49 1304-1353 492-540 (1074)
41 PRK10604 sensor protein RstB; 96.1 0.036 7.8E-07 67.0 11.6 99 159-278 319-422 (433)
42 COG3290 CitA Signal transducti 96.1 0.017 3.6E-07 71.8 8.8 101 158-279 426-531 (537)
43 PLN03237 DNA topoisomerase 2; 96.1 0.014 2.9E-07 79.4 8.5 101 158-266 76-180 (1465)
44 COG0187 GyrB Type IIA topoisom 96.0 0.0089 1.9E-07 75.1 5.8 103 158-270 35-141 (635)
45 PRK10755 sensor protein BasS/P 95.9 0.039 8.4E-07 64.2 10.6 98 159-278 247-349 (356)
46 PTZ00109 DNA gyrase subunit b; 95.9 0.0088 1.9E-07 78.0 5.6 77 128-208 100-176 (903)
47 PRK09470 cpxA two-component se 95.8 0.053 1.2E-06 64.6 11.2 97 160-277 354-455 (461)
48 PRK11006 phoR phosphate regulo 95.7 0.072 1.6E-06 64.0 11.8 102 159-279 317-423 (430)
49 PRK09467 envZ osmolarity senso 95.6 0.058 1.2E-06 64.2 10.4 88 159-268 331-423 (435)
50 PRK10364 sensor protein ZraS; 95.6 0.059 1.3E-06 65.2 10.7 95 159-278 348-447 (457)
51 PHA02569 39 DNA topoisomerase 95.4 0.021 4.7E-07 72.6 6.0 105 159-268 45-152 (602)
52 TIGR01386 cztS_silS_copS heavy 95.3 0.11 2.4E-06 61.7 11.4 50 159-211 353-404 (457)
53 PRK09303 adaptive-response sen 95.3 0.096 2.1E-06 62.6 10.9 98 159-277 272-375 (380)
54 PRK11086 sensory histidine kin 95.2 0.096 2.1E-06 63.9 10.8 98 159-279 433-535 (542)
55 PRK15053 dpiB sensor histidine 95.1 0.14 3E-06 63.2 11.6 100 160-278 433-538 (545)
56 COG0642 BaeS Signal transducti 95.0 0.1 2.2E-06 57.3 9.3 49 159-211 228-278 (336)
57 TIGR02916 PEP_his_kin putative 94.9 0.12 2.5E-06 66.5 10.9 86 159-267 579-669 (679)
58 PRK11360 sensory histidine kin 94.9 0.088 1.9E-06 64.0 9.3 50 159-211 500-552 (607)
59 PRK10549 signal transduction h 94.8 0.14 3.1E-06 61.4 10.6 100 159-277 352-456 (466)
60 PRK11100 sensory histidine kin 94.8 0.13 2.8E-06 61.4 10.0 51 159-212 368-420 (475)
61 PRK15347 two component system 94.6 0.14 3.1E-06 67.0 10.8 96 159-278 513-613 (921)
62 PRK10337 sensor protein QseC; 94.4 0.14 3E-06 61.4 9.1 86 160-268 353-441 (449)
63 TIGR03785 marine_sort_HK prote 94.4 0.21 4.6E-06 64.8 11.3 100 159-276 597-701 (703)
64 PRK10815 sensor protein PhoQ; 94.2 0.23 5.1E-06 61.5 10.9 95 159-278 378-477 (485)
65 TIGR02966 phoR_proteo phosphat 94.2 0.27 5.9E-06 55.3 10.5 91 159-267 229-324 (333)
66 TIGR02938 nifL_nitrog nitrogen 94.2 0.25 5.4E-06 58.8 10.5 52 160-211 388-442 (494)
67 PRK09835 sensor kinase CusS; P 94.1 0.27 5.9E-06 59.2 10.9 98 159-277 375-478 (482)
68 COG4191 Signal transduction hi 94.1 0.2 4.4E-06 63.1 9.8 59 152-211 490-550 (603)
69 TIGR02956 TMAO_torS TMAO reduc 94.0 0.2 4.4E-06 66.1 10.3 98 158-278 578-682 (968)
70 TIGR01925 spIIAB anti-sigma F 93.9 0.39 8.5E-06 49.0 10.1 48 159-206 39-88 (137)
71 COG4585 Signal transduction hi 93.9 0.19 4E-06 59.8 8.8 81 158-275 278-361 (365)
72 PRK11644 sensory histidine kin 93.9 0.15 3.4E-06 63.4 8.4 45 159-207 410-456 (495)
73 PRK04069 serine-protein kinase 93.8 0.32 7E-06 51.9 9.4 53 158-210 41-95 (161)
74 PRK11466 hybrid sensory histid 93.7 0.3 6.4E-06 64.3 11.0 96 159-278 561-661 (914)
75 PF13581 HATPase_c_2: Histidin 93.6 0.34 7.4E-06 48.6 8.8 53 158-210 30-84 (125)
76 PRK11073 glnL nitrogen regulat 93.5 0.27 5.8E-06 56.9 8.9 94 159-277 237-345 (348)
77 PRK13837 two-component VirA-li 93.1 0.45 9.8E-06 62.7 11.2 96 159-279 560-675 (828)
78 PRK10490 sensor protein KdpD; 93.1 0.46 1E-05 63.5 11.4 99 159-278 778-881 (895)
79 PRK10618 phosphotransfer inter 93.0 0.47 1E-05 63.4 11.3 100 159-279 565-672 (894)
80 PRK11107 hybrid sensory histid 92.8 0.45 9.8E-06 62.4 10.5 100 159-278 408-517 (919)
81 PRK03660 anti-sigma F factor; 92.7 0.88 1.9E-05 46.9 10.5 49 158-206 38-88 (146)
82 PRK11091 aerobic respiration c 92.1 0.69 1.5E-05 60.2 10.8 101 159-279 398-505 (779)
83 PRK10841 hybrid sensory kinase 92.1 0.73 1.6E-05 61.8 11.2 100 159-278 562-666 (924)
84 TIGR01924 rsbW_low_gc serine-p 91.9 1.2 2.7E-05 47.7 10.6 52 159-210 42-95 (159)
85 PRK10600 nitrate/nitrite senso 91.8 0.54 1.2E-05 59.1 9.1 84 160-278 470-555 (569)
86 KOG1845 MORC family ATPases [C 91.6 0.17 3.6E-06 65.8 4.4 93 157-266 144-246 (775)
87 TIGR02168 SMC_prok_B chromosom 91.6 1.1 2.4E-05 60.3 12.1 30 1305-1340 502-531 (1179)
88 PRK13560 hypothetical protein; 91.5 0.45 9.8E-06 60.8 8.1 48 160-207 712-762 (807)
89 PRK10547 chemotaxis protein Ch 91.0 1.3 2.8E-05 57.6 11.4 114 163-277 389-521 (670)
90 PRK09959 hybrid sensory histid 90.5 1.2 2.7E-05 60.6 11.3 99 159-279 828-936 (1197)
91 COG2205 KdpD Osmosensitive K+ 89.4 1.9 4.1E-05 56.6 10.7 50 159-211 775-826 (890)
92 PRK13557 histidine kinase; Pro 89.0 2.2 4.9E-05 51.9 10.8 96 160-278 278-393 (540)
93 COG0643 CheA Chemotaxis protei 86.6 3.6 7.8E-05 54.1 11.0 119 161-279 434-575 (716)
94 COG2972 Predicted signal trans 85.9 2.8 6E-05 52.0 9.2 53 159-211 350-405 (456)
95 KOG0787 Dehydrogenase kinase [ 85.4 2.2 4.7E-05 51.9 7.5 105 159-272 260-374 (414)
96 COG2172 RsbW Anti-sigma regula 85.1 7.6 0.00016 41.7 10.8 52 158-209 39-93 (146)
97 PRK04863 mukB cell division pr 84.5 1.5 3.3E-05 61.4 6.6 135 1268-1451 653-790 (1486)
98 PRK13559 hypothetical protein; 83.4 2.2 4.8E-05 49.9 6.5 48 160-207 268-319 (361)
99 KOG1845 MORC family ATPases [C 83.1 0.78 1.7E-05 59.9 2.9 56 195-270 2-57 (775)
100 COG3920 Signal transduction hi 82.2 2 4.3E-05 48.8 5.3 49 159-207 122-174 (221)
101 COG4564 Signal transduction hi 77.8 6.5 0.00014 47.3 7.6 91 160-278 356-448 (459)
102 COG3850 NarQ Signal transducti 77.6 5.1 0.00011 50.7 7.1 79 159-272 481-562 (574)
103 PRK10935 nitrate/nitrite senso 74.3 4.1 8.9E-05 50.6 5.3 44 160-207 472-518 (565)
104 COG3851 UhpB Signal transducti 71.3 9.1 0.0002 46.7 6.7 45 159-207 410-456 (497)
105 KOG0979 Structural maintenance 68.8 37 0.00081 46.0 11.9 48 1303-1350 446-493 (1072)
106 COG3852 NtrB Signal transducti 63.6 13 0.00029 44.6 6.0 97 159-278 241-353 (363)
107 cd04715 BAH_Orc1p_like BAH, or 55.5 19 0.00041 39.5 5.1 106 595-709 11-124 (159)
108 KOG0355 DNA topoisomerase type 54.2 18 0.00038 48.1 5.4 71 139-210 33-103 (842)
109 TIGR03769 P_ac_wall_RPT actino 52.8 8.4 0.00018 33.4 1.6 17 829-845 6-23 (41)
110 COG5000 NtrY Signal transducti 51.6 24 0.00053 45.7 5.9 52 160-211 601-658 (712)
111 COG4251 Bacteriophytochrome (l 48.0 48 0.0011 43.3 7.6 51 160-212 637-689 (750)
112 cd04713 BAH_plant_3 BAH, or Br 46.0 56 0.0012 35.2 6.8 97 601-703 8-104 (146)
113 PF02196 RBD: Raf-like Ras-bin 39.9 55 0.0012 31.3 5.0 52 41-95 3-56 (71)
114 COG5002 VicK Signal transducti 38.5 89 0.0019 38.6 7.5 50 159-211 342-393 (459)
115 PF14501 HATPase_c_5: GHKL dom 36.6 50 0.0011 32.5 4.4 44 158-201 4-48 (100)
116 COG4192 Signal transduction hi 36.4 54 0.0012 41.5 5.4 61 149-211 554-617 (673)
117 smart00455 RBD Raf-like Ras-bi 28.1 93 0.002 29.8 4.5 52 41-95 2-55 (70)
118 COG3275 LytS Putative regulato 28.0 64 0.0014 41.1 4.2 48 160-207 457-507 (557)
119 PF06470 SMC_hinge: SMC protei 27.0 3.6E+02 0.0078 26.9 8.7 41 1305-1349 79-119 (120)
120 cd01818 TIAM1_RBD Ubiquitin do 26.5 1.1E+02 0.0024 30.3 4.6 28 41-71 2-29 (77)
121 COG4841 Uncharacterized protei 21.6 87 0.0019 31.7 3.0 49 1048-1101 22-70 (95)
122 cd04370 BAH BAH, or Bromo Adja 20.9 1.6E+02 0.0034 29.3 4.8 95 611-711 1-95 (123)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.79 E-value=4.9e-19 Score=232.82 Aligned_cols=141 Identities=26% Similarity=0.394 Sum_probs=121.2
Q ss_pred CCCceeeeccccccccchHHHHHHHHhcccccceEEEccHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000400 1304 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1383 (1566)
Q Consensus 1304 ~~gV~G~VA~Lg~V~d~~~s~als~~lG~~~m~~VV~~t~e~ak~ie~ylke~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1383 (1566)
++||+|+|+.|++|+ +.|.+||+.++|++ ++.||+.|...|+.++.|+++.+ .||+||||
T Consensus 514 ~~Gv~G~v~~li~v~-~~y~~Aie~alG~~-l~~vVV~~~~~a~~~i~~lk~~~------------------~gr~tflp 573 (1163)
T COG1196 514 LPGVYGPVAELIKVK-EKYETALEAALGNR-LQAVVVENEEVAKKAIEFLKENK------------------AGRATFLP 573 (1163)
T ss_pred CCCccchHHHhcCcC-hHHHHHHHHHcccc-cCCeeeCChHHHHHHHHHHhhcC------------------CCccccCc
Confidence 799999999999997 59999999999985 89999999999999999995555 99999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEeeeecccccccccccccccCCCcchhHHHhhhccceeeecHH
Q 000400 1384 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1463 (1566)
Q Consensus 1384 L~~Irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~d~~~~~~~t~~g~gLretlf~~vfg~t~Vy~Tre 1463 (1566)
|+.|++.+.. +... .+||+|||+|+|+|||+|. .+|+++||+|.|+ +
T Consensus 574 l~~i~~~~~~--------------~~~~----~~g~~~~a~dli~~d~~~~------------~~~~~~l~~t~Iv---~ 620 (1163)
T COG1196 574 LDRIKPLRSL--------------KSDA----APGFLGLASDLIDFDPKYE------------PAVRFVLGDTLVV---D 620 (1163)
T ss_pred hhhhcccccc--------------cccc----ccchhHHHHHHhcCCHHHH------------HHHHHHhCCeEEe---c
Confidence 9999985432 1111 5899999999999999996 7999999999997 5
Q ss_pred hHHHHHhhccCc-----eEEecCCeeeccceEeeCCCCC
Q 000400 1464 DMIEAHTCIRHG-----AVSLDGGILKEDGIISLGCGNP 1497 (1566)
Q Consensus 1464 ~m~~A~~~i~~~-----~VTLDG~li~~~G~~tgG~~~~ 1497 (1566)
+|+.|+.++... +|||||++++++|+||||++.+
T Consensus 621 ~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~~ 659 (1163)
T COG1196 621 DLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNK 659 (1163)
T ss_pred CHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCccc
Confidence 677788885443 8999999999999999996543
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.77 E-value=3.6e-18 Score=222.39 Aligned_cols=140 Identities=21% Similarity=0.331 Sum_probs=118.1
Q ss_pred CCCceeeeccccccccchHHHHHHHHhcccccceEEEccHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000400 1304 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1383 (1566)
Q Consensus 1304 ~~gV~G~VA~Lg~V~d~~~s~als~~lG~~~m~~VV~~t~e~ak~ie~ylke~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1383 (1566)
.+||+|+|+.|+.|+ +.|..|+++++|+. +..|||+|.+.|+.+++|+++.+ .||+||||
T Consensus 520 ~~g~~g~l~dli~v~-~~y~~Aie~~lg~~-l~~ivv~~~~~a~~~i~~l~~~~------------------~gr~tflp 579 (1164)
T TIGR02169 520 IQGVHGTVAQLGSVG-ERYATAIEVAAGNR-LNNVVVEDDAVAKEAIELLKRRK------------------AGRATFLP 579 (1164)
T ss_pred CCCceecHHHhcCcC-HHHHHHHHHHhhhh-hCCEEECCHHHHHHHHHHHHhcC------------------CCCeeecc
Confidence 589999999999996 89999999999985 88899999999999999995554 89999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEeeeecccccccccccccccCCCcchhHHHhhhccceeeecHH
Q 000400 1384 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1463 (1566)
Q Consensus 1384 L~~Irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~d~~~~~~~t~~g~gLretlf~~vfg~t~Vy~Tre 1463 (1566)
|+.|++... + ..+|. ++|++++|+++|+||+.|. .++.++||++.|+ +
T Consensus 580 l~~~~~~~~-------------~-~~~~~---~~~~~~~~~~~i~~~~~~~------------~~~~~~lg~~~v~---~ 627 (1164)
T TIGR02169 580 LNKMRDERR-------------D-LSILS---EDGVIGFAVDLVEFDPKYE------------PAFKYVFGDTLVV---E 627 (1164)
T ss_pred HhhcCCCCC-------------C-ccccc---CCCchHHHHHHccCcHHHH------------HHHHHHCCCeEEE---c
Confidence 999975211 0 11222 5789999999999999996 7999999999997 4
Q ss_pred hHHHHHhhccCc-eEEecCCeeeccceEeeCCC
Q 000400 1464 DMIEAHTCIRHG-AVSLDGGILKEDGIISLGCG 1495 (1566)
Q Consensus 1464 ~m~~A~~~i~~~-~VTLDG~li~~~G~~tgG~~ 1495 (1566)
+++.|..+.+.. +|||||++++++|+||||+.
T Consensus 628 ~l~~a~~~~~~~~~vTldG~~~~~~G~~tgG~~ 660 (1164)
T TIGR02169 628 DIEAARRLMGKYRMVTLEGELFEKSGAMTGGSR 660 (1164)
T ss_pred CHHHHHHHhcCCcEEEeCceeEcCCcCccCCCC
Confidence 677788877533 89999999999999999963
No 3
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.71 E-value=8.2e-18 Score=172.01 Aligned_cols=132 Identities=32% Similarity=0.438 Sum_probs=82.1
Q ss_pred CCHHHHHHHHhhcchhhcccCCCCceEEEEEeec---CCeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCC
Q 000400 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIA---EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGK 234 (1566)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d---~~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk 234 (1566)
|+++.||+||||||+|| .|++|.|.++.+ ...|+|.|||.||+.++|.. |+.+|.+.++...
T Consensus 1 y~~~~al~ElI~Ns~DA-----~a~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~---~~~~g~s~k~~~~------- 65 (137)
T PF13589_consen 1 YSPEDALRELIDNSIDA-----GATNIKISIDEDKKGERYIVIEDNGEGMSREDLES---FFRIGRSSKKSEK------- 65 (137)
T ss_dssp -SCTHHHHHHHHHHHHH-----HHHHEEEEEEEETTTTTEEEEEESSS---HHHHHH---HTTCHHTHHHHHH-------
T ss_pred CcHHHHHHHHHHHHHHc-----cCCEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH---hccccCCCCCchh-------
Confidence 67799999999999999 577788888875 47899999999999999976 6666666543211
Q ss_pred CCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhcccccCceeecCCCCCC--CcccccCCCCC
Q 000400 235 PPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFP--SKDEIADSPHG 312 (1566)
Q Consensus 235 ~~~~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~~v~el~LD~d~Le~~s~~d~ewkl~~~ir~p--s~eEi~~s~hG 312 (1566)
....+|+||+|+|.|+|++|+.++|+|++.+....+.++.++ +.. ...|.++...... ..+++...+||
T Consensus 66 ---~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~~~--~~~----~~~~~i~~~~~~~~~~~~~~~~~~~G 136 (137)
T PF13589_consen 66 ---DRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDYDW--IEK----DESWDIPERESEEIQNESELDKSEHG 136 (137)
T ss_dssp ---HGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEEEE--ETT------------------------------
T ss_pred ---hhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEEec--ccc----cccccccccccccccccccccccccC
Confidence 133699999999999999999999999999887766665553 321 2345554332221 12344456788
Q ss_pred C
Q 000400 313 S 313 (1566)
Q Consensus 313 T 313 (1566)
|
T Consensus 137 t 137 (137)
T PF13589_consen 137 T 137 (137)
T ss_dssp -
T ss_pred C
Confidence 7
No 4
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=4.4e-16 Score=195.06 Aligned_cols=177 Identities=14% Similarity=0.144 Sum_probs=128.6
Q ss_pred CCCCceeeeccccccccchHHHHHHHHhcccccceEEEccHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEE
Q 000400 1303 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 1382 (1566)
Q Consensus 1303 ~~~gV~G~VA~Lg~V~d~~~s~als~~lG~~~m~~VV~~t~e~ak~ie~ylke~~i~~~~~~~~~~~s~~~~~~GR~tfL 1382 (1566)
.++|++|-.+.||.|+ +.|-.|||+ ++. .++.||++|++.|+.++.||++++ .||+||+
T Consensus 614 ~i~Gf~GRLGDLg~Id-~kYDvAIsT-ac~-~LdyiVVdt~e~aq~cI~fl~~~n------------------LgraTFi 672 (1293)
T KOG0996|consen 614 RIPGFYGRLGDLGAID-EKYDVAIST-ACA-RLDYIVVDTIETAQECINFLKKNN------------------LGRATFI 672 (1293)
T ss_pred CCCccccccccccccc-hHHHHHHHH-hcc-ccceEEeccHHHHHHHHHHHHHcC------------------CCceeEE
Confidence 3899999999999995 899999999 444 499999999999999999996666 9999999
Q ss_pred ecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEeeeeccccc-ccccccccccCCCcchhHHHhhhccceeeec
Q 000400 1383 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLD-DHHMHIRTSAGNGLRETLLYRLFGKLQVYKT 1461 (1566)
Q Consensus 1383 pL~~Irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~d-~~~~~~~t~~g~gLretlf~~vfg~t~Vy~T 1461 (1566)
+||+|+.+.+++. +++- |=.+=+-.+||+|. +++. ++||+++++|+|-
T Consensus 673 ~LDki~~~~~~l~--~i~t---------------penvPRLfDLv~~~d~~~r------------~aFYfaLrdtLV~-- 721 (1293)
T KOG0996|consen 673 ILDKIKDHQKKLA--PITT---------------PENVPRLFDLVKCKDEKFR------------PAFYFALRDTLVA-- 721 (1293)
T ss_pred ehHhhhhhhhccC--CCCC---------------CCCcchHhhhhccCCHHHH------------HHHHHHHhhhhhh--
Confidence 9999987655532 1111 11223456799998 7776 7999999999995
Q ss_pred HHhHHHHHhhccC----c-eEEecCCeeeccceEeeCCCCC-ceeeccc--ccccc-hhHHHHHHHHHHHHHHHHhHHHH
Q 000400 1462 RKDMIEAHTCIRH----G-AVSLDGGILKEDGIISLGCGNP-TICFPIV--RTRIS-TQSIEALKQIEEKKLELDGIMQL 1532 (1566)
Q Consensus 1462 re~m~~A~~~i~~----~-~VTLDG~li~~~G~~tgG~~~~-~~~F~~~--~~~~~-~~~~~~~~q~~~~~~~~~~~~~~ 1532 (1566)
+++++|.+..-+ + .|||||.||+.||+||||-..+ +-+-+.. ....+ .....+++++..+..+.+.+.+.
T Consensus 722 -d~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~ 800 (1293)
T KOG0996|consen 722 -DNLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQ 800 (1293)
T ss_pred -cCHHHHHHHhhcCCCceEEEEecceeecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688889888322 2 8999999999999999775442 2222222 11222 22334555555555554444444
No 5
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.2e-15 Score=188.83 Aligned_cols=257 Identities=21% Similarity=0.296 Sum_probs=166.1
Q ss_pred hhhhhhHHHHHHHhhhccchhhhh---hHhhhhHhHHHHHHHHHHHhhhcccccccccHHHHHHHHHhhccccceeeeee
Q 000400 1214 PIMKIVNELESEVRNYGLCIGRHE---KALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCS 1290 (1566)
Q Consensus 1214 ~~~~~~~~l~~~l~~~g~~i~~~e---~~l~~l~~~~~~~~~~~~~lq~~~~~~~~~~~e~~~~~i~~~e~~aa~i~~~l 1290 (1566)
..-+.-+++...|+.||.++.+.| +...-|+.-...+.+....|-+++.+|. |
T Consensus 452 ~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~------------------------f 507 (1174)
T KOG0933|consen 452 ALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLANYE------------------------F 507 (1174)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc------------------------c
Confidence 455566778888888888887533 2223333334444444444444443332 1
Q ss_pred cccccCCCCCCC-CCCCceeeeccccccccchHHHHHHHHhcccccceEEEccHHHHHHHHHhhhcCCccccchhhhhhh
Q 000400 1291 TKEFLCSKPRSN-FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAA 1369 (1566)
Q Consensus 1291 ~~~~~~~~~~s~-~~~gV~G~VA~Lg~V~d~~~s~als~~lG~~~m~~VV~~t~e~ak~ie~ylke~~i~~~~~~~~~~~ 1369 (1566)
+-. .|..+ .-..|.|+||+|.+|.|..|++||+..+||+ +..||+.|.+.++.| |+-|.
T Consensus 508 ~Y~----dP~~nfdrs~V~G~Va~Li~vkd~~~~tAle~~aGgr-LynvVv~te~tgkqL---Lq~g~------------ 567 (1174)
T KOG0933|consen 508 TYQ----DPEPNFDRSKVKGLVAKLIKVKDRSYATALETTAGGR-LYNVVVDTEDTGKQL---LQRGN------------ 567 (1174)
T ss_pred ccC----CCCccchHHHHHHHHHHHheeCcchHHHHHHHHhcCc-ceeEEeechHHHHHH---hhccc------------
Confidence 111 12223 3567999999999999999999999999996 667777777888777 33333
Q ss_pred hcCcccCCceEEEecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEeeeecccccccccccccccCCCcchhHH
Q 000400 1370 ALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLL 1449 (1566)
Q Consensus 1370 s~~~~~~GR~tfLpL~~Irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~d~~~~~~~t~~g~gLretlf 1449 (1566)
..-|.|.||||+|+.+.-. |+.- +... ...++..-.|++||.||+.+. .+.
T Consensus 568 -----l~rRvTiIPLnKI~s~~~s-----~~v~-----~~ak--~v~~~~v~~al~Li~yd~~l~------------~am 618 (1174)
T KOG0933|consen 568 -----LRRRVTIIPLNKIQSFVLS-----PNVL-----QAAK--NVGNDNVELALSLIGYDDELK------------KAM 618 (1174)
T ss_pred -----ccceeEEEechhhhhccCC-----HhHH-----HHHH--HhcCchHHHHHHHhcCCHHHH------------HHH
Confidence 3469999999999875432 1110 1110 134677888999999999886 799
Q ss_pred HhhhccceeeecHHhHHHHHhh-----ccCceEEecCCeeeccceEeeCCCCCceeecccccccchhHHHHHHHHHHHHH
Q 000400 1450 YRLFGKLQVYKTRKDMIEAHTC-----IRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKL 1524 (1566)
Q Consensus 1450 ~~vfg~t~Vy~Tre~m~~A~~~-----i~~~~VTLDG~li~~~G~~tgG~~~~~~~F~~~~~~~~~~~~~~~~q~~~~~~ 1524 (1566)
.|+||+|.|++ +++.|+.. |.-..|||+||.+.++|.+|||+++++-. .+.-+-..-+++.|++....
T Consensus 619 efvFG~tlVc~---~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~----~L~~l~~l~~~~~~~~~~q~ 691 (1174)
T KOG0933|consen 619 EFVFGSTLVCD---SLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGAD----LLRQLQKLKQAQKELRAIQK 691 (1174)
T ss_pred HHHhCceEEec---CHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCccc----HHHHHHHHHHHHHHHHHHHH
Confidence 99999999985 66668876 44347999999999999999999875432 11111112234444444433
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000400 1525 ELDGIMQLIQESNKALEKDLEKLKNSEDKF 1554 (1566)
Q Consensus 1525 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1554 (1566)
+ .+++++|++.|+....||..=++++
T Consensus 692 e----l~~le~eL~~le~~~~kf~~l~~ql 717 (1174)
T KOG0933|consen 692 E----LEALERELKSLEAQSQKFRDLKQQL 717 (1174)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3344555555555555555555444
No 6
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.4e-14 Score=180.91 Aligned_cols=141 Identities=20% Similarity=0.249 Sum_probs=121.5
Q ss_pred CCCceeeeccccccccchHHHHHHHHhcccccceEEEccHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000400 1304 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1383 (1566)
Q Consensus 1304 ~~gV~G~VA~Lg~V~d~~~s~als~~lG~~~m~~VV~~t~e~ak~ie~ylke~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1383 (1566)
.|||+|.|..|++-.-..|..|++.+||. .|++|||.|...|+.|+.|+|+-+ .|-+||||
T Consensus 501 fPgv~GrviDLc~pt~kkyeiAvt~~Lgk-~~daIiVdte~ta~~CI~ylKeqr------------------~~~~TFlP 561 (1141)
T KOG0018|consen 501 FPGVYGRVIDLCQPTQKKYEIAVTVVLGK-NMDAIIVDTEATARDCIQYLKEQR------------------LEPMTFLP 561 (1141)
T ss_pred CCCccchhhhcccccHHHHHHHHHHHHhc-ccceEEeccHHHHHHHHHHHHHhc------------------cCCccccc
Confidence 69999999999999878999999999997 699999999999999999996665 89999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEeeeecccccccccccccccCCCcchhHHHhhhccceeeecHH
Q 000400 1384 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1463 (1566)
Q Consensus 1384 L~~Irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~d~~~~~~~t~~g~gLretlf~~vfg~t~Vy~Tre 1463 (1566)
|++|+...- .-+|++ +.| .-.|+|.|+|+++|. .+..|++|+++|-+|++
T Consensus 562 ld~i~v~~~--------------~e~lr~---~~g-~rlv~Dvi~ye~e~e------------ka~~~a~gn~Lvcds~e 611 (1141)
T KOG0018|consen 562 LDSIRVKPV--------------NEKLRE---LGG-VRLVIDVINYEPEYE------------KAVQFACGNALVCDSVE 611 (1141)
T ss_pred hhhhhcCcc--------------cccccC---cCC-eEEEEEecCCCHHHH------------HHHHHHhccceecCCHH
Confidence 999986322 234544 566 789999999999995 79999999999986555
Q ss_pred hHHHHHhh-ccCc----eEEecCCeeeccceEeeCCCC
Q 000400 1464 DMIEAHTC-IRHG----AVSLDGGILKEDGIISLGCGN 1496 (1566)
Q Consensus 1464 ~m~~A~~~-i~~~----~VTLDG~li~~~G~~tgG~~~ 1496 (1566)
+ |+.+ .|.+ +|||||-++.++|.||||+..
T Consensus 612 ~---Ar~l~y~~~~r~k~valdGtl~~ksGlmsGG~s~ 646 (1141)
T KOG0018|consen 612 D---ARDLAYGGEIRFKVVALDGTLIHKSGLMSGGSSG 646 (1141)
T ss_pred H---HHHhhhcccccceEEEeeeeEEeccceecCCccC
Confidence 4 8887 2322 799999999999999999877
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=99.53 E-value=2.2e-13 Score=168.71 Aligned_cols=295 Identities=17% Similarity=0.201 Sum_probs=175.9
Q ss_pred cCCCHH-HHhhCCC-CC-CHHHHHHHHhhcchhhcccCCC-----CceEEEEE-eecCCeEEEEECCCCCChHhHhHhhh
Q 000400 144 LTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWTNAK-----NERRLISV-NIAEDKISVFDTGPGMDSTDENSIVK 214 (1566)
Q Consensus 144 L~Pd~~-lL~sLg~-~Y-sl~sALAELVDNSIDA~~~Na~-----AtrI~I~I-~~d~~~I~I~DNG~GMS~deL~~a~k 214 (1566)
+.-++. +|..++. -| +...+|+|||.||+||...... ..+|.|.+ +.++..|+|.|||.||+.+++.+ .
T Consensus 5 Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~~~~l~I~DnGiGmt~eel~~--~ 82 (601)
T PRK14083 5 FQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAGGGTLIVEDNGIGLTEEEVHE--F 82 (601)
T ss_pred chHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCCCcEEEEEeCCCCCCHHHHHH--H
Confidence 334445 5555565 35 6899999999999999633100 12566666 44578899999999999999976 7
Q ss_pred ccccccchhccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhcccccCceee
Q 000400 215 WGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRT 294 (1566)
Q Consensus 215 wG~~g~S~kR~~~a~~~ggk~~~~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~~v~el~LD~d~Le~~s~~d~ewkl 294 (1566)
||++|.|.++... .+. .....+|+||+|+ .|+|.+|++++|.|+..+....+.|.-+ ++..|.+
T Consensus 83 l~~ig~S~k~~~~---~~~---~~~~~IG~FGIGf-~S~F~vad~v~V~Tr~~~~~~~~~W~~~---------~~g~y~i 146 (601)
T PRK14083 83 LATIGRSSKRDEN---LGF---ARNDFLGQFGIGL-LSCFLVADEIVVVSRSAKDGPAVEWRGK---------ADGTYSV 146 (601)
T ss_pred Hhhhccchhhhhh---hcc---cccccccccccce-EEEEEecCEEEEEeccCCCCceEEEEEC---------CCCceEE
Confidence 8999988665421 111 1245899999997 4899999999999999764445555432 2334544
Q ss_pred cCCCCCCCcccccCCCCCCeeEEEEeCCCC--CCcChhHHHHHHHhhcCCccccccccCCCCcccceEEEeCCe-ecccc
Q 000400 295 NGGIRFPSKDEIADSPHGSFTKVEIWEPKL--KSLDVKPLGCKLKDIYFPYIQCDEISSTGKTTRPIEFQVNGI-DLAEV 371 (1566)
Q Consensus 295 ~~~ir~ps~eEi~~s~hGTFT~VVI~eLk~--~~~~i~~Lrr~La~IYhpyL~~d~ls~~Gk~i~pIei~VNg~-~L~eI 371 (1566)
... + .+ ..++|| +|++.-..- ......++++ |..-|..|+. -++..+|+. -.||.. +||.-
T Consensus 147 ~~~---~-~~---~~~~GT--~I~L~l~~d~~~~~~~~~i~~-li~~ys~~i~-~pI~l~~~~-----~~iN~~~~lW~~ 210 (601)
T PRK14083 147 RKL---E-TE---RAEPGT--TVYLRPRPDAEEWLERETVEE-LAKKYGSLLP-VPIRVEGEK-----GGVNETPPPWTR 210 (601)
T ss_pred EeC---C-CC---CCCCCC--EEEEEecCchhhhccHHHHHH-HHHHHhccCC-CCcccCCce-----eeecCCCCCccC
Confidence 321 0 01 124898 777764321 1223334444 4466766666 333333321 134433 34422
Q ss_pred cCCcce--ee---ccc--ccCCCCceEEEEEEeeccccccCCCCCCCCccccEEEEEEecccCCCCcchhHHhHHhhhcC
Q 000400 372 AGGEVA--IT---NMH--SCNGPDFILQLHFSLRQASATTNSPGSRPSKEANARLKFVYFPVTEEGESIDIIMNKLISEG 444 (1566)
Q Consensus 372 egd~v~--~~---~l~--~~~g~~f~fel~~~v~~~~~~lr~Pg~~~~~~g~V~g~~~YfPf~~~kEt~p~~l~~L~~~g 444 (1566)
....++ .+ ..| ..+.++ .+-+|+.+ ++ +...|.++|.|....-.
T Consensus 211 ~~~eit~~~eey~~Fyk~~~~~~P-l~~ih~~~-------------e~--~~~~~~Ly~iP~~~~~~------------- 261 (601)
T PRK14083 211 DYPDPETRREALLAYGEELLGFTP-LDVIPLDV-------------PS--GGLEGVAYVLPYAVSPA------------- 261 (601)
T ss_pred CccccCccHHHHHHHHHHhcCCCc-hheeeecc-------------cc--hhheEEEEecCCCCCcc-------------
Confidence 222211 11 111 111222 23456644 33 45688888878643110
Q ss_pred CcccccccccccccccccccccCccccccccccchhhccccchhhHHHhhheeeeeeeCCCCCCCCCCcccccccchHHH
Q 000400 445 CVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTI 524 (1566)
Q Consensus 445 ~~~~~~Fe~F~~vsvrw~GRLIP~a~w~~L~Fm~~~~krg~k~~i~~e~~~Rvkg~lf~~~~F~vT~nKl~l~~~~~~~~ 524 (1566)
.+ .++.||=+.-||.+- ++ .++.+|.+=|+|.++.++ .+.+-|+..|-+ ++...
T Consensus 262 ------~~--~~v~LY~~rVfI~d~---------------~~-~lLP~wl~FvrGVVDS~D-LpLNvSRE~LQ~-~~~l~ 315 (601)
T PRK14083 262 ------AR--RKHRVYLKRMLLSEE---------------AE-NLLPDWAFFVRCVVNTDE-LRPTASREALYE-DDALA 315 (601)
T ss_pred ------cc--CceEEEeeeeEeecc---------------hh-hhhHHHHHHheeeeecCC-CCCccCHHHHcc-CHHHH
Confidence 11 246666776777662 12 255599999999999887 899999988854 44444
Q ss_pred HHH
Q 000400 525 ALK 527 (1566)
Q Consensus 525 aL~ 527 (1566)
.++
T Consensus 316 ~ir 318 (601)
T PRK14083 316 AVR 318 (601)
T ss_pred HHH
Confidence 444
No 8
>PRK05218 heat shock protein 90; Provisional
Probab=99.52 E-value=5.6e-13 Score=165.95 Aligned_cols=133 Identities=18% Similarity=0.257 Sum_probs=90.4
Q ss_pred cccCCCHH-HHhhCCCC-C-CHHHHHHHHhhcchhhccc-------------CCCCceEEEEEeecCCeEEEEECCCCCC
Q 000400 142 WDLTPDTD-LLRELPED-Y-TFETALADLIDNSLQAVWT-------------NAKNERRLISVNIAEDKISVFDTGPGMD 205 (1566)
Q Consensus 142 idL~Pd~~-lL~sLg~~-Y-sl~sALAELVDNSIDA~~~-------------Na~AtrI~I~I~~d~~~I~I~DNG~GMS 205 (1566)
+.+.-++. +|..++.. | +...+|+|||+||+||... +....+|.|.++-++..|+|.|||+||+
T Consensus 6 ~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~GMt 85 (613)
T PRK05218 6 GEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGIGMT 85 (613)
T ss_pred eehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCCCCC
Confidence 44455555 44445543 5 6899999999999999532 1122345555555566899999999999
Q ss_pred hHhHhHhhhccccccchhccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCC-CceEEEEEEe
Q 000400 206 STDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKV-SKEVYTLHLE 278 (1566)
Q Consensus 206 ~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~~~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~g-s~~v~el~LD 278 (1566)
.+|+.. .|++++.|..+... ..+.+........+|+||+|+. |+|.++++++|.||+.+ ....+.|..+
T Consensus 86 ~eel~~--~l~~ia~Sg~~~f~-~k~~~~~~~~~~~iG~fGiGf~-S~f~va~~v~V~Sr~~~~~~~~~~w~~~ 155 (613)
T PRK05218 86 REEVIE--NLGTIAKSGTKEFL-EKLKGDQKKDSQLIGQFGVGFY-SAFMVADKVTVITRSAGPAAEAVRWESD 155 (613)
T ss_pred HHHHHH--HHHhhccccchhHH-HHhhcccccccccccccCcCch-hhhhccCEEEEEEcCCCCCCceEEEEEe
Confidence 999976 67777766322110 0111111123568999999985 79999999999999977 5556777644
No 9
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=3.1e-13 Score=167.08 Aligned_cols=138 Identities=19% Similarity=0.274 Sum_probs=108.0
Q ss_pred CCCceeeeccccccccchHHHHHHHHhcccccceEEEccHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000400 1304 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1383 (1566)
Q Consensus 1304 ~~gV~G~VA~Lg~V~d~~~s~als~~lG~~~m~~VV~~t~e~ak~ie~ylke~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1383 (1566)
..||+|+|..|+.|+ +.+-+|+++.+|.+ +..||+++.+.|..|.+-+ .+-..||.||||
T Consensus 521 ~ngv~G~v~eL~~v~-~~f~tavEvtaGNs-LF~iVVdndevATkIl~~~------------------n~m~~GrVTF~P 580 (1200)
T KOG0964|consen 521 PNGVFGTVYELIKVP-NKFKTAVEVTAGNS-LFNIVVDNDEVATKILRKL------------------NKMKGGRVTFMP 580 (1200)
T ss_pred ccccceehhhhhcCC-HHHHhHHhhhcccc-eEEEEecccHHHHHHHHHH------------------HhccCCeeEEee
Confidence 589999999999996 69999998888886 6666667777777775444 334479999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEeeeecccccccccccccccCCCcchhHHHhhhccceeeecHH
Q 000400 1384 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1463 (1566)
Q Consensus 1384 L~~Irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~d~~~~~~~t~~g~gLretlf~~vfg~t~Vy~Tre 1463 (1566)
||.|++....+ |.-++. ---..-|+|+|+|. .+|..|||+|.|. .
T Consensus 581 LNrl~~r~v~y-------------p~~sda-------iPli~kl~y~p~fd------------ka~k~Vfgktivc---r 625 (1200)
T KOG0964|consen 581 LNRLKARDVEY-------------PKDSDA-------IPLISKLRYEPQFD------------KALKHVFGKTIVC---R 625 (1200)
T ss_pred cccCchhhccC-------------CCCCCc-------cchHHHhCcchhhH------------HHHHHHhCceEEe---c
Confidence 99998843332 222220 11233578999995 8999999999997 5
Q ss_pred hHHHHHhhccCc---eEEecCCeeeccceEeeCCCC
Q 000400 1464 DMIEAHTCIRHG---AVSLDGGILKEDGIISLGCGN 1496 (1566)
Q Consensus 1464 ~m~~A~~~i~~~---~VTLDG~li~~~G~~tgG~~~ 1496 (1566)
+|.+|.+..... .||||||.+...|+||||+..
T Consensus 626 dl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D 661 (1200)
T KOG0964|consen 626 DLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYED 661 (1200)
T ss_pred cHHHHHHHHHhcCCCeEEeccceecccCCccccchh
Confidence 888899986554 799999999999999999975
No 10
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=99.38 E-value=1.3e-12 Score=129.17 Aligned_cols=117 Identities=25% Similarity=0.321 Sum_probs=96.9
Q ss_pred CCceeeeccccccccchHHHHHHHHhcccccceEEEccHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEec
Q 000400 1305 EDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICL 1384 (1566)
Q Consensus 1305 ~gV~G~VA~Lg~V~d~~~s~als~~lG~~~m~~VV~~t~e~ak~ie~ylke~~i~~~~~~~~~~~s~~~~~~GR~tfLpL 1384 (1566)
+||+|.|++|.+| +++|..|++++||+. +++|||+|.+.|+.+.+++++.+ .||.+|+||
T Consensus 2 ~gv~G~l~dli~v-~~~~~~Ave~~LG~~-l~~iVV~~~~~a~~~i~~l~~~~------------------~gr~~~i~l 61 (120)
T PF06470_consen 2 PGVLGRLADLIEV-DPKYEKAVEAALGGR-LQAIVVEDEETAKKIIEFLKENK------------------LGRATFIPL 61 (120)
T ss_dssp TTEEEEGGGSEEE-SGGGHHHHHHHHGGG-GGSEEESSHHHHHHHHHHHHHTT------------------SCEEEEEET
T ss_pred CCeeeeHHhceec-CHHHHHHHHHHHHHh-hceEEECcHHHHHHHHHHHhhcc------------------CCeEEEEEC
Confidence 6999999999999 789999999999985 99999999999999999996554 899999999
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEeeeecccc-cccccccccccCCCcchhHHHhhhccceeeecHH
Q 000400 1385 EGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNL-DDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1463 (1566)
Q Consensus 1385 ~~Irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~-d~~~~~~~t~~g~gLretlf~~vfg~t~Vy~Tre 1463 (1566)
+.+++..... ..+. ..++|...+++|+|+| |+++. .++.++||++.|++
T Consensus 62 ~~~~~~~~~~--------------~~~~-~~~~~~~~~l~d~i~~~d~~~~------------~~~~~llg~~~vv~--- 111 (120)
T PF06470_consen 62 DKIRSRSSAS--------------SADQ-IRPPGGAGPLIDLIEFPDEEYR------------PALEFLLGDVVVVD--- 111 (120)
T ss_dssp TTTGGGTTSC--------------CCGG-HHSTTSEEEGGGGEEESCGGGH------------HHHHHHHTTEEEES---
T ss_pred cccccccccc--------------chhh-ccCCcchHHHHHhcccCcHHHH------------HHHHHHcCCEEEEC---
Confidence 9997643211 0000 0047899999999999 77886 79999999999985
Q ss_pred hHHHHHhh
Q 000400 1464 DMIEAHTC 1471 (1566)
Q Consensus 1464 ~m~~A~~~ 1471 (1566)
++++|+.+
T Consensus 112 ~l~~A~~l 119 (120)
T PF06470_consen 112 DLEEARKL 119 (120)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHh
Confidence 66668764
No 11
>PTZ00130 heat shock protein 90; Provisional
Probab=99.31 E-value=5.9e-12 Score=158.41 Aligned_cols=178 Identities=18% Similarity=0.230 Sum_probs=116.0
Q ss_pred cCccEEEEEecCCcccccccccccccCCCHHHHh-hCCC-CC-CHHHHHHHHhhcchhhccc-------C----CCCceE
Q 000400 119 PSKCHILKLYDGSGEIAKTFENMWDLTPDTDLLR-ELPE-DY-TFETALADLIDNSLQAVWT-------N----AKNERR 184 (1566)
Q Consensus 119 ~~~~~i~~l~~g~~~l~~~~~n~idL~Pd~~lL~-sLg~-~Y-sl~sALAELVDNSIDA~~~-------N----a~AtrI 184 (1566)
.+-.+|--+.+|+. ++.....+.+.-+++-|. .+.. -| +...+|+|||.||+||..+ + .....+
T Consensus 47 ~~~~~~~~~~~~~~--~~~~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~ 124 (814)
T PTZ00130 47 KDRDNIPEIEDGEK--PTSGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKL 124 (814)
T ss_pred cccccCcccccCCC--CCcccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCc
Confidence 34445555666665 455555677888887443 3333 46 5889999999999999641 1 011234
Q ss_pred EEEEee--cCCeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCCCCCCccccccchhhhhhcccCEEEE
Q 000400 185 LISVNI--AEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALV 262 (1566)
Q Consensus 185 ~I~I~~--d~~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~~~r~~IGrFGvGlK~AsfsLG~~ltV 262 (1566)
.|+|.. ++..|+|.|||+|||.+|+.+ +||+++.|..+.... .+++ .......||+||||+ .|+|.++++++|
T Consensus 125 ~I~I~~D~~~~tLtI~DnGIGMT~eEl~~--nLgTIA~Sgt~~F~~-~l~~-~~~~~~lIGQFGVGF-YSaFmVAdkV~V 199 (814)
T PTZ00130 125 EIRISANKEKNILSITDTGIGMTKEDLIN--NLGTIAKSGTSNFLE-AISK-SGGDMSLIGQFGVGF-YSAFLVADKVIV 199 (814)
T ss_pred eEEEEECCCCCEEEEEECCCCCCHHHHHH--HhhhhcccccHHHHH-Hhhc-cCCCcccccccccch-hheeeecCEEEE
Confidence 555554 478899999999999999976 899998874432210 1111 112356899999996 599999999999
Q ss_pred EEeeCCCceEEEEEEehhHHhhcccccCceeecCCCCCCCcccccCCCCCCeeEEEEeC
Q 000400 263 SSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWE 321 (1566)
Q Consensus 263 ~TK~~gs~~v~el~LD~d~Le~~s~~d~ewkl~~~ir~ps~eEi~~s~hGTFT~VVI~e 321 (1566)
.||..+.. .+.|.-+ ++..|.+....+. ...++|| +|++.-
T Consensus 200 ~Trs~~~~-~~~W~s~---------g~g~y~I~e~~~~------~~~~rGT--~I~LhL 240 (814)
T PTZ00130 200 YTKNNNDE-QYIWEST---------ADAKFTIYKDPRG------STLKRGT--RISLHL 240 (814)
T ss_pred EEcCCCCc-eEEEEEC---------CCCcEEEEECCCC------CCCCCCc--EEEEEE
Confidence 99987644 4555422 3556766432111 1124899 666653
No 12
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.25 E-value=1.2e-11 Score=154.50 Aligned_cols=120 Identities=24% Similarity=0.213 Sum_probs=93.8
Q ss_pred cccCCCHHHHhhCCC-CCCHHHHHHHHhhcchhhcccCCCCceEEEEEeecC-CeEEEEECCCCCChHhHhHh-hhcccc
Q 000400 142 WDLTPDTDLLRELPE-DYTFETALADLIDNSLQAVWTNAKNERRLISVNIAE-DKISVFDTGPGMDSTDENSI-VKWGKM 218 (1566)
Q Consensus 142 idL~Pd~~lL~sLg~-~Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~-~~I~I~DNG~GMS~deL~~a-~kwG~~ 218 (1566)
..|+|+....++.|+ ...+.+||.|||+||||| +|++|.|.++..+ ..|.|.|||+||+++||..+ .++++.
T Consensus 5 r~L~~~l~nqIAAGEVIerPaSVVKELVENSlDA-----GAt~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTS 79 (638)
T COG0323 5 RQLPPDLVNQIAAGEVIERPASVVKELVENSLDA-----GATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATS 79 (638)
T ss_pred eeCCHHHHHHhcccceeecHHHHHHHHHhccccc-----CCCEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccc
Confidence 356677777788888 689999999999999999 8999888888764 56999999999999999652 222221
Q ss_pred ccchhccccccccCCCCCCCCCCcccccc-chhhhhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000400 219 GASLHRASKAQGIGGKPPYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1566)
Q Consensus 219 g~S~kR~~~a~~~ggk~~~~r~~IGrFGv-GlK~AsfsLG~~ltV~TK~~gs~~v~el~LD~ 279 (1566)
- +.. ......+-.||+ |.++||++-.++++|.|++.+....+++.++.
T Consensus 80 K-----------I~~--~~DL~~I~TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g 128 (638)
T COG0323 80 K-----------IAS--LEDLFRIRTLGFRGEALASIASVSRLTITSRTAEASEGTQIYAEG 128 (638)
T ss_pred c-----------CCc--hhHHHHhhccCccHHHHHHHHhhheeEEEeecCCcCceEEEEecC
Confidence 1 110 112346778899 99999999999999999988877778887765
No 13
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.2e-11 Score=147.75 Aligned_cols=156 Identities=17% Similarity=0.264 Sum_probs=105.9
Q ss_pred cccCCCHHHHhh-CCC-CC-CHHHHHHHHhhcchhhcccC-------C------CCceEEEEEeecCCeEEEEECCCCCC
Q 000400 142 WDLTPDTDLLRE-LPE-DY-TFETALADLIDNSLQAVWTN-------A------KNERRLISVNIAEDKISVFDTGPGMD 205 (1566)
Q Consensus 142 idL~Pd~~lL~s-Lg~-~Y-sl~sALAELVDNSIDA~~~N-------a------~AtrI~I~I~~d~~~I~I~DNG~GMS 205 (1566)
+.+.-++.-|.. +.. -| +-+..|+|||.||-||.-+- . +.-+|.|.++-++..++|.|||+|||
T Consensus 7 ~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGIGMT 86 (623)
T COG0326 7 RGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGIGMT 86 (623)
T ss_pred hhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCCCCCC
Confidence 344555563333 333 46 58889999999999995221 1 12344444455578999999999999
Q ss_pred hHhHhHhhhccccccchhccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhc
Q 000400 206 STDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRC 285 (1566)
Q Consensus 206 ~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~~~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~~v~el~LD~d~Le~~ 285 (1566)
.+|+.+ ..|+++.|..|... ...++.. ....-||+||+|+ .+||.++++|+|.||..++...+.|.-+
T Consensus 87 ~~Ev~~--~LgTIAkSgT~~F~-~~l~~~~-~~~~lIGQFGVGF-YSaFmVAdkV~V~T~~~~~~~~~~W~S~------- 154 (623)
T COG0326 87 KDEVIE--NLGTIAKSGTKEFL-ESLSEDQ-KDSDLIGQFGVGF-YSAFMVADKVTVITRSAGEDEAYHWESD------- 154 (623)
T ss_pred HHHHHH--HHHHhhhccHHHHH-HHhcccc-ccccccccccchh-hheeeeeeeEEEEeccCCCCcceEEEEc-------
Confidence 999976 78999888554322 1112222 4567899999996 5899999999999999998777766433
Q ss_pred ccccCceeecCCCCCCCcccccCCC-CCCeeEEEEeCC
Q 000400 286 SDAELTWRTNGGIRFPSKDEIADSP-HGSFTKVEIWEP 322 (1566)
Q Consensus 286 s~~d~ewkl~~~ir~ps~eEi~~s~-hGTFT~VVI~eL 322 (1566)
++++|.+... ...+ +|| +|++.=.
T Consensus 155 --g~g~ytv~~~---------~~~~~~GT--~I~L~Lk 179 (623)
T COG0326 155 --GEGEYTVEDI---------DKEPRRGT--EITLHLK 179 (623)
T ss_pred --CCCceEEeec---------cCCCCCCc--EEEEEEC
Confidence 4566766432 2223 599 6666543
No 14
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=9.5e-11 Score=135.30 Aligned_cols=118 Identities=21% Similarity=0.162 Sum_probs=80.4
Q ss_pred ccCCCHHHHhhCCC-CCCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC-eEEEEECCCCCChHhHhHhhhcccccc
Q 000400 143 DLTPDTDLLRELPE-DYTFETALADLIDNSLQAVWTNAKNERRLISVNIAED-KISVFDTGPGMDSTDENSIVKWGKMGA 220 (1566)
Q Consensus 143 dL~Pd~~lL~sLg~-~Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~-~I~I~DNG~GMS~deL~~a~kwG~~g~ 220 (1566)
.|.|++.....++. .+++..||.|||+||+|| +|++|.|.+..++. .|.|.|||.||+.+++..+ +....
T Consensus 5 ~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA-----~a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~---~~~~~ 76 (312)
T TIGR00585 5 PLPPELVNKIAAGEVIERPASVVKELVENSLDA-----GATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLA---CERHA 76 (312)
T ss_pred ECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHC-----CCCEEEEEEEeCCEEEEEEEecCCCCCHHHHHHH---hhCCC
Confidence 35566665555555 689999999999999999 67888888766543 5999999999999999763 22222
Q ss_pred chhccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEee-CCCceEEEEE
Q 000400 221 SLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKT-KVSKEVYTLH 276 (1566)
Q Consensus 221 S~kR~~~a~~~ggk~~~~r~~IGrFGvGlK~AsfsLG~~ltV~TK~-~gs~~v~el~ 276 (1566)
+.+-... ........+|++|.| +|+++..++++|.|++ ++....+.+.
T Consensus 77 tsk~~~~------~~~~~~~~~G~rG~a--l~si~~~s~~~i~S~~~~~~~~~~~~~ 125 (312)
T TIGR00585 77 TSKIQSF------EDLERIETLGFRGEA--LASISSVSRLTITTKTSAADGLAWQAL 125 (312)
T ss_pred cCCCCCh------hHhhcccccCccchH--HHHHHhhCcEEEEEeecCCCcceEEEE
Confidence 2110000 001123456677665 4788877899999998 6666565554
No 15
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.09 E-value=3.7e-10 Score=141.35 Aligned_cols=119 Identities=21% Similarity=0.192 Sum_probs=83.2
Q ss_pred ccCCCHHHHhhCCC-CCCHHHHHHHHhhcchhhcccCCCCceEEEEEeecC-CeEEEEECCCCCChHhHhHhhhcccccc
Q 000400 143 DLTPDTDLLRELPE-DYTFETALADLIDNSLQAVWTNAKNERRLISVNIAE-DKISVFDTGPGMDSTDENSIVKWGKMGA 220 (1566)
Q Consensus 143 dL~Pd~~lL~sLg~-~Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~-~~I~I~DNG~GMS~deL~~a~kwG~~g~ 220 (1566)
.|.+++...++.++ ..++.++|.|||+||+|| +|++|.|.+..++ ..|+|.|||+||+.+++..+.. ..+
T Consensus 5 ~L~~~v~~~IaAgevI~~~~svvkElveNsiDA-----gat~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~---~~~ 76 (617)
T PRK00095 5 LLPPQLANQIAAGEVVERPASVVKELVENALDA-----GATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALA---RHA 76 (617)
T ss_pred ECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhC-----CCCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhh---ccC
Confidence 45666666677777 689999999999999999 7899899886543 5799999999999999976322 111
Q ss_pred chhccccccccCC-CCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 221 SLHRASKAQGIGG-KPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 221 S~kR~~~a~~~gg-k~~~~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
+.+ +.. ...+....+|+.|.| +||++..++++|.||+.++...+.+.+.
T Consensus 77 tsK-------i~~~~dl~~~~t~GfrGeA--L~sI~~vs~l~i~s~~~~~~~~~~~~~~ 126 (617)
T PRK00095 77 TSK-------IASLDDLEAIRTLGFRGEA--LPSIASVSRLTLTSRTADAAEGWQIVYE 126 (617)
T ss_pred CCC-------CCChhHhhccccCCcchhH--HHhhhhceEEEEEEecCCCCceEEEEec
Confidence 111 000 001123455666655 5777777899999999876666666543
No 16
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.01 E-value=8.2e-10 Score=139.01 Aligned_cols=130 Identities=24% Similarity=0.287 Sum_probs=87.8
Q ss_pred cccCCCHHHHhhC-CC-CC-CHHHHHHHHhhcchhhccc-------C----CCCceEEEEEee--cCCeEEEEECCCCCC
Q 000400 142 WDLTPDTDLLREL-PE-DY-TFETALADLIDNSLQAVWT-------N----AKNERRLISVNI--AEDKISVFDTGPGMD 205 (1566)
Q Consensus 142 idL~Pd~~lL~sL-g~-~Y-sl~sALAELVDNSIDA~~~-------N----a~AtrI~I~I~~--d~~~I~I~DNG~GMS 205 (1566)
+.+.-++.-|..+ .. -| +....|+|||.||.||... + .....+.|++.. +...++|.|||.||+
T Consensus 5 ~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt 84 (701)
T PTZ00272 5 FAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMT 84 (701)
T ss_pred EecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCC
Confidence 3444555534333 33 35 4788899999999999522 1 012235566554 457899999999999
Q ss_pred hHhHhHhhhccccccchhccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 206 STDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 206 ~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~~~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
.+|+.+ .||+++.|..+.... .... ......||+||+|+ .++|.+|.+++|.||..+. ..+.|..+
T Consensus 85 ~edl~~--~LgtIa~SGt~~f~~-~~~~--~~~~~~iGqFGvGf-yS~Fmvad~V~V~Srs~~~-~~~~W~s~ 150 (701)
T PTZ00272 85 KADLVN--NLGTIARSGTKAFME-ALEA--GGDMSMIGQFGVGF-YSAYLVADRVTVTSKNNSD-ESYVWESS 150 (701)
T ss_pred HHHHHH--HhhhhhhcchHHHHH-Hhhc--cCCccccCCCCcce-EEEEEeccEEEEEEecCCC-ceEEEEEC
Confidence 999976 789988774332110 0101 11256899999996 5899999999999998664 46777544
No 17
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.76 E-value=2.4e-08 Score=118.40 Aligned_cols=108 Identities=27% Similarity=0.287 Sum_probs=81.5
Q ss_pred CCHHHHHHHHhhcchhhcccCCCCceEEEEEeec-CC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCC
Q 000400 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGK 234 (1566)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d-~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk 234 (1566)
-++.+++.|||+||+||+-.+.=-..|.|.|+.. ++ .+.|.|||.|++.+.+-+ -||.+= +|++
T Consensus 35 RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPk--vFGk~L-----------ygSK 101 (538)
T COG1389 35 RSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPK--VFGKML-----------YGSK 101 (538)
T ss_pred hHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHhHH--HHHHHh-----------ccch
Confidence 4799999999999999963321113456666542 33 588999999999999976 576543 3455
Q ss_pred CCCCCCCccccccchhhhhhc----ccCEEEEEEeeCCCceEEEEEEe
Q 000400 235 PPYLTPFFGMFGYGGPIASMH----LGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 235 ~~~~r~~IGrFGvGlK~Asfs----LG~~ltV~TK~~gs~~v~el~LD 278 (1566)
....++..|.+|+|.+.|.++ -|+.++|+|++.++..++.+.+-
T Consensus 102 fh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~ 149 (538)
T COG1389 102 FHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELK 149 (538)
T ss_pred hhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEE
Confidence 556678999999999987766 79999999999987776665444
No 18
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.76 E-value=3.1e-08 Score=119.51 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=105.7
Q ss_pred hhCCC-CCCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC-eEEEEECCCCCChHhHhHh-hhccccccchhccccc
Q 000400 152 RELPE-DYTFETALADLIDNSLQAVWTNAKNERRLISVNIAED-KISVFDTGPGMDSTDENSI-VKWGKMGASLHRASKA 228 (1566)
Q Consensus 152 ~sLg~-~Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~-~I~I~DNG~GMS~deL~~a-~kwG~~g~S~kR~~~a 228 (1566)
++.|+ .-.|..||.|||.||+|| +++.|.|.+.-++- -+.|.|||.||-++||.-+ .+|.+.-.. +.
T Consensus 19 IAAGEVI~RP~NAlKEliENSLDA-----~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~--kF--- 88 (694)
T KOG1979|consen 19 IAAGEVIQRPVNALKELIENSLDA-----NSTSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTSKLT--KF--- 88 (694)
T ss_pred hhccchhhchHHHHHHHHhccccC-----CCceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhhhcc--hh---
Confidence 44555 468999999999999999 78887776665554 4778899999999999642 233322111 11
Q ss_pred cccCCCCCCCCCCcccccc-chhhhhhcccCEEEEEEeeCCCceEEEEEEehhHHhhcccccCceeecCCCCCCCccccc
Q 000400 229 QGIGGKPPYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDAELTWRTNGGIRFPSKDEIA 307 (1566)
Q Consensus 229 ~~~ggk~~~~r~~IGrFGv-GlK~AsfsLG~~ltV~TK~~gs~~v~el~LD~d~Le~~s~~d~ewkl~~~ir~ps~eEi~ 307 (1566)
.....+..||+ |.++||++-..+++|.||+++..++|+......++.. .| ...
T Consensus 89 --------EDL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~~---------------~p--Kpc- 142 (694)
T KOG1979|consen 89 --------EDLFSLSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMIA---------------TP--KPC- 142 (694)
T ss_pred --------HHHHhhhhcCccHHHHhhhhheeEEEEEEeecCceeeeEEEeecccccc---------------CC--CCc-
Confidence 12346789999 9999999999999999999999988886543222210 00 011
Q ss_pred CCCCCCeeEEEEeCCCC----C----CcChhHHHHHHHhhcCCcccc
Q 000400 308 DSPHGSFTKVEIWEPKL----K----SLDVKPLGCKLKDIYFPYIQC 346 (1566)
Q Consensus 308 ~s~hGTFT~VVI~eLk~----~----~~~i~~Lrr~La~IYhpyL~~ 346 (1566)
.+..|| .|++.++-. + ...-++.++-+-.+-+|-+|.
T Consensus 143 Agk~GT--~I~vedLFYN~~~Rrkal~~~~EE~~ki~dlv~ryAIHn 187 (694)
T KOG1979|consen 143 AGKQGT--IITVEDLFYNMPTRRKALRNHAEEYRKIMDLVGRYAIHN 187 (694)
T ss_pred cCCCce--EEEehHhhccCHHHHHHhcCcHHHHHHHHHHHHHHheeC
Confidence 245799 788888711 1 344555555555555555663
No 19
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.70 E-value=2.8e-07 Score=121.11 Aligned_cols=143 Identities=22% Similarity=0.315 Sum_probs=106.5
Q ss_pred CCCceeeeccccccccchHHHHHHHHhcccccceEEEccHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000400 1304 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1383 (1566)
Q Consensus 1304 ~~gV~G~VA~Lg~V~d~~~s~als~~lG~~~m~~VV~~t~e~ak~ie~ylke~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1383 (1566)
.++++|.++.|..++ +.|..|++..+|+. +..||+.+.+.|..+..++++. ..|+.+|+|
T Consensus 518 ~~~~~g~~~~li~~~-~~~~~a~~~~~g~~-~~~ivv~~~~~a~~~~~~l~~~------------------~~g~~~~l~ 577 (1179)
T TIGR02168 518 LSGILGVLSELISVD-EGYEAAIEAALGGR-LQAVVVENLNAAKKAIAFLKQN------------------ELGRVTFLP 577 (1179)
T ss_pred cCCCccchhceeeeC-hhHHHHHHHHHHHH-hcCeEECCHHHHHHHHHHhccc------------------CCCcEEEee
Confidence 378999999999994 79999999888874 7778888998888777787433 489999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEeeeecccccccccccccccCCCcchhHHHhhhccceeeecHH
Q 000400 1384 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1463 (1566)
Q Consensus 1384 L~~Irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~d~~~~~~~t~~g~gLretlf~~vfg~t~Vy~Tre 1463 (1566)
++.++..... .+ ..+.++. ..|++++|.|++.|++.+. .++.+.++.+.++ .
T Consensus 578 l~~i~~~~~~----~~------~~~~~~~---~~~~~~~~~dl~~~~~~~~------------~~~~~~~~~~~iv---t 629 (1179)
T TIGR02168 578 LDSIKGTEIQ----GN------DREILKN---IEGFLGVAKDLVKFDPKLR------------KALSYLLGGVLVV---D 629 (1179)
T ss_pred cccccccccc----cc------chhhccc---cCchhHHHHHHhcccHhHH------------HHHHHHhCCceEe---C
Confidence 9999642110 00 0112222 4689999999999998875 5778889987775 4
Q ss_pred hHHHHHhhc----cCc-eEEecCCeeeccceEeeCC
Q 000400 1464 DMIEAHTCI----RHG-AVSLDGGILKEDGIISLGC 1494 (1566)
Q Consensus 1464 ~m~~A~~~i----~~~-~VTLDG~li~~~G~~tgG~ 1494 (1566)
.|+.|.... .+| +||++|+++...|.+++|.
T Consensus 630 ~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~~ 665 (1179)
T TIGR02168 630 DLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGS 665 (1179)
T ss_pred CHHHHHHHHHHcCCCceEEecCCEEEcCCceEecCc
Confidence 566677654 244 8999999888888887664
No 20
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.49 E-value=3e-07 Score=113.54 Aligned_cols=105 Identities=21% Similarity=0.266 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHhhcchhhcccCCCCceEEEEEee-cCCeEEEEECCCCCChHhHhHh-hhccccccchhccccccccCCC
Q 000400 157 DYTFETALADLIDNSLQAVWTNAKNERRLISVNI-AEDKISVFDTGPGMDSTDENSI-VKWGKMGASLHRASKAQGIGGK 234 (1566)
Q Consensus 157 ~Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~-d~~~I~I~DNG~GMS~deL~~a-~kwG~~g~S~kR~~~a~~~ggk 234 (1566)
.+++.+||.|||+||||| +|+.|.|.+.- .-..|.|.|||.|+++.+..-+ +++-+.... +
T Consensus 18 I~sl~sAVKELvENSiDA-----GAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~-----------~- 80 (672)
T KOG1978|consen 18 ITSLVSAVKELVENSIDA-----GATAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKHTTSKIV-----------S- 80 (672)
T ss_pred eccHHHHHHHHHhcCccc-----CCceeeEecCCCCcceEEEecCCCCCCccchhhhhhhhhhhccc-----------c-
Confidence 689999999999999999 79988888854 4578999999999999987531 111111100 0
Q ss_pred CCCCCCCcccccc-chhhhhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000400 235 PPYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1566)
Q Consensus 235 ~~~~r~~IGrFGv-GlK~AsfsLG~~ltV~TK~~gs~~v~el~LD~ 279 (1566)
-.+...+=.||+ |.++.++.--..+.|.|++.+......|.+|.
T Consensus 81 -f~Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh 125 (672)
T KOG1978|consen 81 -FADLAVLFTLGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYDH 125 (672)
T ss_pred -hhhhhhhhhhhhHHHHHHhhhhccceEEEEeeccCccceeEEEcc
Confidence 012334457787 87777777667889999998666677888886
No 21
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.38 E-value=2.2e-06 Score=108.13 Aligned_cols=108 Identities=24% Similarity=0.315 Sum_probs=71.1
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+..+|.|||+||+||.........|.|.+...+. .|.|.|||.||+++++..+ |..+.+ +++..
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~I--Ferf~~-----------tSKf~ 112 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKV--FGKLLY-----------GSRFH 112 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHH--hhhhcc-----------ccccc
Confidence 48899999999999995221111156666665544 5899999999999999763 322211 11111
Q ss_pred CCCCCccccccchhhhhhc----ccCEEEEEEeeCCCceEE--EEEEeh
Q 000400 237 YLTPFFGMFGYGGPIASMH----LGRRALVSSKTKVSKEVY--TLHLEK 279 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~Asfs----LG~~ltV~TK~~gs~~v~--el~LD~ 279 (1566)
......|..|+|+.+|... .|..++|.|+..++...+ ++.++.
T Consensus 113 ~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~ 161 (795)
T PRK14868 113 AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDT 161 (795)
T ss_pred ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEec
Confidence 1124567889998865433 478899999987765554 555554
No 22
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=98.30 E-value=4.2e-07 Score=111.15 Aligned_cols=103 Identities=21% Similarity=0.204 Sum_probs=79.0
Q ss_pred hhCCCCCCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccchhcccccccc
Q 000400 152 RELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGI 231 (1566)
Q Consensus 152 ~sLg~~Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ 231 (1566)
++.....++..++.|||-||+|| +|+.|.|.|+...-++.|.|||.||+.+||.. .|.-.++.+ .
T Consensus 14 rSg~~~~sla~~VeElv~NSiDA-----~At~V~v~V~~~t~sv~ViDdG~G~~rdDl~~---lg~ry~TSK-~------ 78 (1142)
T KOG1977|consen 14 RSGLAISSLAQCVEELVLNSIDA-----EATCVAVRVNMETFSVQVIDDGFGMGRDDLEK---LGNRYFTSK-C------ 78 (1142)
T ss_pred hccchHHHHHHHHHHHHhhcccc-----CceEEEEEecCceeEEEEEecCCCccHHHHHH---HHhhhhhhh-c------
Confidence 33333579999999999999999 79999999999999999999999999999975 443332211 0
Q ss_pred CCCCCCCCCCcccccc-chhhhhhcccCEEEEEEeeCCCce
Q 000400 232 GGKPPYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKE 271 (1566)
Q Consensus 232 ggk~~~~r~~IGrFGv-GlK~AsfsLG~~ltV~TK~~gs~~ 271 (1566)
..-......-.||+ |.++|+++--+.+.|+||..+...
T Consensus 79 --h~~ndl~~~~tyGfRGeALasIsd~s~l~v~skkk~r~~ 117 (1142)
T KOG1977|consen 79 --HSVNDLENPRTYGFRGEALASISDMSSLVVISKKKNRTM 117 (1142)
T ss_pred --eeccccccccccccchhhhhhhhhhhhhhhhhhhcCCch
Confidence 00112334457898 999999999999999999987553
No 23
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.24 E-value=9.1e-06 Score=100.55 Aligned_cols=106 Identities=28% Similarity=0.351 Sum_probs=68.6
Q ss_pred HHHHHHHHhhcchhhcccCCCCceEEEEEeec---C--CeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCC
Q 000400 160 FETALADLIDNSLQAVWTNAKNERRLISVNIA---E--DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGK 234 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~AtrI~I~I~~d---~--~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk 234 (1566)
+..+|.|||+||+||.........|.|.+... + -.|.|.|||.||+.+++..+ |+..-. +++
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~i--F~~f~~-----------~SK 103 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKV--FGKLLY-----------GSK 103 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHH--hhhhhc-----------ccc
Confidence 78999999999999963221112566766542 2 35899999999999999762 332111 111
Q ss_pred CCCCCCCccccccchhhhhh----cccCEEEEEEeeCCCceEEEEEEe
Q 000400 235 PPYLTPFFGMFGYGGPIASM----HLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 235 ~~~~r~~IGrFGvGlK~Asf----sLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
........|.+|+|++.+.. ..|..++|.|++.+....+.+.+.
T Consensus 104 ~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~ 151 (535)
T PRK04184 104 FHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELK 151 (535)
T ss_pred ccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEE
Confidence 11113456889999876432 246779999998766544555444
No 24
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.21 E-value=6.8e-06 Score=100.69 Aligned_cols=108 Identities=28% Similarity=0.326 Sum_probs=72.1
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeec-CC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d-~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~ 235 (1566)
.+..++.|||+||+||.........|.|.+... .+ .|+|.|||.||+.+++..+ |+.+.+ +++.
T Consensus 28 ~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~i--F~rf~~-----------tsK~ 94 (488)
T TIGR01052 28 SLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKV--FGKMLA-----------GSKF 94 (488)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhh--hhhccc-----------cCcc
Confidence 578999999999999953221112567766653 33 6999999999999999762 332221 1111
Q ss_pred CCCCCCccccccchhhhhh----cccCEEEEEEeeCCCceEEEEEEeh
Q 000400 236 PYLTPFFGMFGYGGPIASM----HLGRRALVSSKTKVSKEVYTLHLEK 279 (1566)
Q Consensus 236 ~~~r~~IGrFGvGlK~Asf----sLG~~ltV~TK~~gs~~v~el~LD~ 279 (1566)
...+...|..|+|+..+.. ..|+.++|.|++.|+...+++.++.
T Consensus 95 ~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~i 142 (488)
T TIGR01052 95 HRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKI 142 (488)
T ss_pred ccccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEe
Confidence 1124456888999875332 2466799999998877766665543
No 25
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3.2e-06 Score=100.66 Aligned_cols=125 Identities=23% Similarity=0.334 Sum_probs=79.9
Q ss_pred cccCCCHHHHhhCCCC--C-CHHHHHHHHhhcchhhccc-------C----CCCc--eEEEEEeecCCeEEEEECCCCCC
Q 000400 142 WDLTPDTDLLRELPED--Y-TFETALADLIDNSLQAVWT-------N----AKNE--RRLISVNIAEDKISVFDTGPGMD 205 (1566)
Q Consensus 142 idL~Pd~~lL~sLg~~--Y-sl~sALAELVDNSIDA~~~-------N----a~At--rI~I~I~~d~~~I~I~DNG~GMS 205 (1566)
+.+...++.+..+.-+ | +-..-|+|||-||-||--+ + .... .|.|..+-.+..+.|.|.|.||+
T Consensus 75 f~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT 154 (785)
T KOG0020|consen 75 FEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMT 154 (785)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCcc
Confidence 4455555544433322 4 4667799999999999311 1 0112 23444444578899999999999
Q ss_pred hHhHhHhhhccccccchhc--cccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCC
Q 000400 206 STDENSIVKWGKMGASLHR--ASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVS 269 (1566)
Q Consensus 206 ~deL~~a~kwG~~g~S~kR--~~~a~~~ggk~~~~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs 269 (1566)
.++|.+ +.|++..|-.. ..+.+..+.....-...||.||+|+. ++|-.++++.|.||+++.
T Consensus 155 ~edLi~--NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFY-sAfLVAD~vvVtsKhNdD 217 (785)
T KOG0020|consen 155 REDLIK--NLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFY-SAFLVADRVVVTSKHNDD 217 (785)
T ss_pred HHHHHH--hhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhh-hhhhhcceEEEEeccCCc
Confidence 999954 67777655211 01111112111223568999999974 889999999999999864
No 26
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=97.98 E-value=1.4e-05 Score=101.22 Aligned_cols=104 Identities=23% Similarity=0.270 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccc--hhccccccccCCC
Q 000400 157 DYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGAS--LHRASKAQGIGGK 234 (1566)
Q Consensus 157 ~Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~~I~I~DNG~GMS~deL~~a~kwG~~g~S--~kR~~~a~~~ggk 234 (1566)
...+...+.||||||+||... ..+++|.|.+.-+ +.|+|.|||+||+.+.... -+.+.+- ..+. ..|++
T Consensus 35 ~~gl~~lv~EivdNaiDe~~a-g~a~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~---~~~~~~E~v~t~l----hagsK 105 (631)
T PRK05559 35 TRGLHHLVQEVIDNSVDEALA-GHGKRIEVTLHAD-GSVSVRDNGRGIPVGIHPE---EGKSGVEVILTKL----HAGGK 105 (631)
T ss_pred Cchhhhhhhhhhccccchhhc-CCCCEEEEEEeCC-CcEEEEEcCCCCCcccccc---cCCcchheeeeec----cccCc
Confidence 457999999999999999643 2578877777655 4899999999999887743 1111111 1111 11222
Q ss_pred CCC--CCCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000400 235 PPY--LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1566)
Q Consensus 235 ~~~--~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~ 270 (1566)
... .....|+.|+|++ +.-.+.+.++|.|++.+..
T Consensus 106 f~~~~yk~SgGl~GvGls-~vNalS~~l~V~s~r~g~~ 142 (631)
T PRK05559 106 FSNKAYKFSGGLHGVGVS-VVNALSSRLEVEVKRDGKV 142 (631)
T ss_pred cCCccccccCcccccchh-hhhhheeeEEEEEEeCCeE
Confidence 211 1256899999986 3446778899999987644
No 27
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=1.3e-05 Score=98.17 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=89.5
Q ss_pred cccccccCCCHHHHhhCCC--CCC-HHHHHHHHhhcchhhccc-------CCC--CceEEEEEee--cCCeEEEEECCCC
Q 000400 138 FENMWDLTPDTDLLRELPE--DYT-FETALADLIDNSLQAVWT-------NAK--NERRLISVNI--AEDKISVFDTGPG 203 (1566)
Q Consensus 138 ~~n~idL~Pd~~lL~sLg~--~Ys-l~sALAELVDNSIDA~~~-------Na~--AtrI~I~I~~--d~~~I~I~DNG~G 203 (1566)
....+.+....+-|..+.. -|+ -+.=|+|||-||-||--+ +.. .....|++.. +...++|.|.|+|
T Consensus 33 ~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIG 112 (656)
T KOG0019|consen 33 PQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIG 112 (656)
T ss_pred cccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCC
Confidence 3356677777775544433 354 577899999999999311 111 1234455443 5788999999999
Q ss_pred CChHhHhHhhhccccccchh-ccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEE
Q 000400 204 MDSTDENSIVKWGKMGASLH-RASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLH 276 (1566)
Q Consensus 204 MS~deL~~a~kwG~~g~S~k-R~~~a~~~ggk~~~~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~~v~el~ 276 (1566)
||.+||.+ +.|++..|.. ...++..- .....+.||.||+|+. ++|..+.+++|+||+.+.. .+.|.
T Consensus 113 MTk~dLvn--nLGTIAkSGtK~Fmealke---a~ad~~~IGQFGvGFY-SaylVAdkV~V~tk~~~~e-~y~We 179 (656)
T KOG0019|consen 113 MTKEDLVN--NLGTIAKSGSKAFLEALKE---AEAESNLIGQFGVGFY-SAFMVADRVVVTTRHPADE-GLQWT 179 (656)
T ss_pred cCHHHHHh--hhhhhhhcccHHHHHHHHh---cccchhhhhhcccchh-hhhhhhheeEEeeccCCCc-ceeee
Confidence 99999965 6788776622 22223220 1134568999999976 7899999999999998765 45553
No 28
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=97.90 E-value=8.9e-05 Score=93.65 Aligned_cols=107 Identities=23% Similarity=0.306 Sum_probs=68.1
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeec-CC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d-~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~ 235 (1566)
.+.+++.|||+||+||.........|.|.+... .. .|.|.|||.||+++++..+ |+.+- .+++.
T Consensus 36 ~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~i--FerF~-----------atSK~ 102 (659)
T PRK14867 36 SMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKV--FGKML-----------AGSKM 102 (659)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhh--hcccc-----------ccCcc
Confidence 345899999999999963221123677777653 33 3999999999999999762 22211 11221
Q ss_pred CCCCCCccccccchhhhh----hcccCEEEEEEeeCCCc-eEEEEEEe
Q 000400 236 PYLTPFFGMFGYGGPIAS----MHLGRRALVSSKTKVSK-EVYTLHLE 278 (1566)
Q Consensus 236 ~~~r~~IGrFGvGlK~As----fsLG~~ltV~TK~~gs~-~v~el~LD 278 (1566)
.......|..|+|+..+. +..|..+++.|+..+.. ....+.++
T Consensus 103 ~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~ 150 (659)
T PRK14867 103 HRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMS 150 (659)
T ss_pred cceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEE
Confidence 112356788899987655 33578889999975433 23444444
No 29
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=97.88 E-value=2e-05 Score=99.52 Aligned_cols=96 Identities=21% Similarity=0.199 Sum_probs=66.9
Q ss_pred CCHHHHHHHHhhcchh---hcccCCCCceEEEEEeecCCeEEEEECCCCCChHh--------HhHhhhccccccchhccc
Q 000400 158 YTFETALADLIDNSLQ---AVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTD--------ENSIVKWGKMGASLHRAS 226 (1566)
Q Consensus 158 Ysl~sALAELVDNSID---A~~~Na~AtrI~I~I~~d~~~I~I~DNG~GMS~de--------L~~a~kwG~~g~S~kR~~ 226 (1566)
..+.++|.||||||+| |. .+++|.|.|+-+ ++|+|.|||+||+.++ +.- -|+...++.
T Consensus 29 ~~~~~lv~ElvdNsiDE~~ag----~a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~--v~t~lhags---- 97 (625)
T TIGR01055 29 TRPNHLVQEVIDNSVDEALAG----FASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEV--ILTTLHAGG---- 97 (625)
T ss_pred CCcceeehhhhhcccchhhcC----CCCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHH--hhhcccccC----
Confidence 4578899999999999 62 588888888766 8999999999999887 332 122221111
Q ss_pred cccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000400 227 KAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1566)
Q Consensus 227 ~a~~~ggk~~~~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~ 270 (1566)
.+... .+ +-..|+-|+|++ +.-.+.+.++|.|++.+..
T Consensus 98 ---K~~~~-~~-~~SgG~~GvGls-~vnalS~~l~v~~~r~g~~ 135 (625)
T TIGR01055 98 ---KFSNK-NY-HFSGGLHGVGIS-VVNALSKRVKIKVYRQGKL 135 (625)
T ss_pred ---CCCCC-cc-eecCCCcchhHH-HHHHhcCeEEEEEEECCeE
Confidence 11110 12 257899999986 3446777899999987654
No 30
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=97.79 E-value=3.5e-05 Score=97.01 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=64.0
Q ss_pred HHHHHHhhcchhhcccCCCCceEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccc-hhccccccccCCCCCC--C
Q 000400 162 TALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGAS-LHRASKAQGIGGKPPY--L 238 (1566)
Q Consensus 162 sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~~I~I~DNG~GMS~deL~~a~kwG~~g~S-~kR~~~a~~~ggk~~~--~ 238 (1566)
..+.||||||+||.... .+++|.|.|+-++ +|+|.|||+||+.+.-. +.+.+ ..-.......|++... .
T Consensus 4 ~~v~ElvdNAiD~~~~g-~at~I~V~i~~~g-~I~V~DnG~GIp~~~h~------~~~~~~~e~v~~~lhag~kfd~~~~ 75 (594)
T smart00433 4 HLVDEIVDNAADEALAG-YMDTIKVTIDKDN-SISVEDNGRGIPVEIHP------KEKKYAPEVIFTVLHAGGKFDDDAY 75 (594)
T ss_pred EEEeeehhcccchhccC-CCCEEEEEEeCCC-eEEEEEeCCceeCCccC------cCCCCcHHHhhhhhcccCCCCCCCc
Confidence 35789999999995433 4888888877664 99999999999965322 11111 0000001112333221 1
Q ss_pred CCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000400 239 TPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1566)
Q Consensus 239 r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~ 270 (1566)
....|+.|+|++ +.-.+..+++|.|++.+..
T Consensus 76 k~s~G~~G~Gls-~vnalS~~l~v~~~~~g~~ 106 (594)
T smart00433 76 KVSGGLHGVGAS-VVNALSTEFEVEVARDGKE 106 (594)
T ss_pred cccCCcccchHH-HHHHhcCceEEEEEeCCcE
Confidence 347899999986 3446778999999998654
No 31
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=97.79 E-value=6.1e-05 Score=95.90 Aligned_cols=103 Identities=18% Similarity=0.178 Sum_probs=65.3
Q ss_pred CCHHHHHHHHhhcchhhcccCCC-CceEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccch-hccccccccCCCC
Q 000400 158 YTFETALADLIDNSLQAVWTNAK-NERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASL-HRASKAQGIGGKP 235 (1566)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~-AtrI~I~I~~d~~~I~I~DNG~GMS~deL~~a~kwG~~g~S~-kR~~~a~~~ggk~ 235 (1566)
..+..++.|||+||+|... ++ +++|.|.++- .+.|+|.|||.||+.+-- .+.+.+. .-.......|++.
T Consensus 29 ~gl~~vv~Elv~NaiDe~~--ag~a~~I~V~i~~-~g~I~V~DnG~GIp~~~h------~~~ki~~~e~i~~~l~ag~kf 99 (654)
T TIGR01059 29 TGLHHLVYEVVDNSIDEAM--AGYCDTINVTIND-DGSVTVEDNGRGIPVDIH------PEEGISAVEVVLTVLHAGGKF 99 (654)
T ss_pred chHHhhhHHhhhccccccc--cCCCCEEEEEEeC-CCcEEEEEeCCCcCcccc------CcCCCCchHHheeeecccCcc
Confidence 4688999999999999321 14 7888888774 456999999999998621 1111110 0000001113332
Q ss_pred CC--CCCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000400 236 PY--LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1566)
Q Consensus 236 ~~--~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~ 270 (1566)
.. .....|+-|+|++. .-.+.+.++|.|++.+..
T Consensus 100 ~~~~~k~s~G~~G~gl~~-inalS~~l~v~~~~~g~~ 135 (654)
T TIGR01059 100 DKDSYKVSGGLHGVGVSV-VNALSEWLEVTVFRDGKI 135 (654)
T ss_pred CCCcceecCCccchhHHH-HHHhcCeEEEEEEECCeE
Confidence 21 13468999999863 446778899999987654
No 32
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=97.78 E-value=6.3e-05 Score=95.45 Aligned_cols=109 Identities=21% Similarity=0.240 Sum_probs=68.0
Q ss_pred CCHHHHHHHHhhcchhhcccCCC-CceEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccc-hhccccccccCCCC
Q 000400 158 YTFETALADLIDNSLQAVWTNAK-NERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGAS-LHRASKAQGIGGKP 235 (1566)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~-AtrI~I~I~~d~~~I~I~DNG~GMS~deL~~a~kwG~~g~S-~kR~~~a~~~ggk~ 235 (1566)
..+...+.||||||+|... ++ +++|.|.++-+ +.|+|.|||+||+.+.- .+.+.+ ..-.......|++.
T Consensus 36 ~gl~~~v~ElvdNaiDe~~--ag~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h------~~~ki~~~e~i~~~lhag~kf 106 (638)
T PRK05644 36 RGLHHLVYEIVDNSIDEAL--AGYCDHIEVTINED-GSITVTDNGRGIPVDIH------PKTGKPAVEVVLTVLHAGGKF 106 (638)
T ss_pred hhHHhhhHHhhhccccccc--CCCCCEEEEEEeCC-CcEEEEEeCccccCCcc------CCCCCCchHHheeeecccCcc
Confidence 4678999999999999321 14 88888887754 59999999999998622 111111 00000011123333
Q ss_pred CC--CCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 236 PY--LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 236 ~~--~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
.. ..-..|+.|+|++. .-.+.+.++|.|++.+. .++..++
T Consensus 107 d~~~yk~s~G~~G~Gls~-vnalS~~~~v~t~r~g~--~~~~~~~ 148 (638)
T PRK05644 107 GGGGYKVSGGLHGVGVSV-VNALSTWLEVEVKRDGK--IYYQEYE 148 (638)
T ss_pred CCCcccccCCccccchhh-hhheeceEEEEEEeCCc--EEEEEEE
Confidence 21 12368999999863 44677889999998765 3444443
No 33
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=97.72 E-value=0.00018 Score=70.13 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=63.4
Q ss_pred HHHHHHHHhhcchhhcccCCCCceEEEEEeec--CCeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCC
Q 000400 160 FETALADLIDNSLQAVWTNAKNERRLISVNIA--EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~AtrI~I~I~~d--~~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~~ 237 (1566)
+..+|.||++||+++...+ ..|.|.+... .-.|.|.|||.||+.+++..+..- ..+. . .
T Consensus 6 l~~il~~ll~Na~~~~~~~---~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~---~~~~-----------~--~ 66 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEG---GKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEP---FFTS-----------D--K 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHT---SEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCST---TSHS-----------S--S
T ss_pred HHHHHHHHHHHHHHHhcCC---CEEEEEEEEecCeEEEEEEeccccccccccccchhh---cccc-----------c--c
Confidence 6789999999999996432 4677777765 346889999999999999763111 1000 0 0
Q ss_pred CCCCccccccchhhhh---hcccCEEEEEEeeCCCceEEEEEEe
Q 000400 238 LTPFFGMFGYGGPIAS---MHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 238 ~r~~IGrFGvGlK~As---fsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
.....+.+|+|+..+. -.++-++.+.+...+ ...+.+.++
T Consensus 67 ~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~-gt~v~~~~p 109 (111)
T PF02518_consen 67 SETSISGHGLGLYIVKQIAERHGGELTIESSEGG-GTTVTFTLP 109 (111)
T ss_dssp SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTT-EEEEEEEEE
T ss_pred cccccCCCChHHHHHHHHHHHCCCEEEEEEcCCC-cEEEEEEEE
Confidence 1223445888876422 236667888887644 334455554
No 34
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=97.64 E-value=8.6e-05 Score=95.32 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=64.4
Q ss_pred CCHHHHHHHHhhcchh---hcccCCCCceEEEEEeecCCeEEEEECCCCCChH----------hHhHhhhccccccchhc
Q 000400 158 YTFETALADLIDNSLQ---AVWTNAKNERRLISVNIAEDKISVFDTGPGMDST----------DENSIVKWGKMGASLHR 224 (1566)
Q Consensus 158 Ysl~sALAELVDNSID---A~~~Na~AtrI~I~I~~d~~~I~I~DNG~GMS~d----------eL~~a~kwG~~g~S~kR 224 (1566)
.-+...+.|+||||+| |. .+++|.|.|+-+ ++|+|.|||+||+.+ |+. |+...
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG----~a~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv----lt~lh----- 101 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAG----HCDDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI----MTVLH----- 101 (756)
T ss_pred cchhhhhhHhhcccccccccC----CCCEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe----eeeec-----
Confidence 5688999999999999 52 378877777654 599999999999987 221 22111
Q ss_pred cccccccCCCCC---CCCCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000400 225 ASKAQGIGGKPP---YLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1566)
Q Consensus 225 ~~~a~~~ggk~~---~~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~ 270 (1566)
.|++.. +.. ..|+.|+|.+ +.-.+.+.++|.|++.|..
T Consensus 102 ------AggKfd~~~ykv-SgGlhGvG~s-vvNAlS~~l~v~v~r~gk~ 142 (756)
T PRK14939 102 ------AGGKFDQNSYKV-SGGLHGVGVS-VVNALSEWLELTIRRDGKI 142 (756)
T ss_pred ------ccCCCCCCcccc-cCCccCccce-EeehccCeEEEEEEeCCeE
Confidence 122222 222 6799999976 3446778899999987654
No 35
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=96.90 E-value=0.0015 Score=83.21 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=65.8
Q ss_pred CCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCC
Q 000400 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1566)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~~ 237 (1566)
.-+...+.|+||||+|-... ..+++|.|.++ ..++|+|.|||.||+.+--.. -+..... --......|++...
T Consensus 33 ~GL~hlv~EIvdNavDE~~a-g~~~~I~V~i~-~dgsitV~DnGrGIPv~~h~~---~~~~~~E--~v~t~LhaGgkfd~ 105 (637)
T TIGR01058 33 KGLHHLVWEIVDNSVDEVLA-GYADNITVTLH-KDNSITVQDDGRGIPTGIHQD---GNISTVE--TVFTVLHAGGKFDQ 105 (637)
T ss_pred chhheehhhhhcchhhhhhc-CCCcEEEEEEc-CCCeEEEEECCCcccCcccCc---CCCccce--eEEEEecccCcCCC
Confidence 45778899999999996432 25778777777 457999999999998642110 1111000 00001112343322
Q ss_pred C--CCCccccccchhhhhhcccCEEEEEEeeCCCce
Q 000400 238 L--TPFFGMFGYGGPIASMHLGRRALVSSKTKVSKE 271 (1566)
Q Consensus 238 ~--r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~~ 271 (1566)
. .-.-|+.|+|.+ ..=.+...++|.+++.|..+
T Consensus 106 ~~ykvSGGlhGvG~s-vvNAlS~~~~V~v~r~gk~~ 140 (637)
T TIGR01058 106 GGYKTAGGLHGVGAS-VVNALSSWLEVTVKRDGQIY 140 (637)
T ss_pred CcccccCCccccccc-ccceeeceEEEEEEECCEEE
Confidence 1 234589999976 44567788999999876443
No 36
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.90 E-value=0.0051 Score=82.45 Aligned_cols=102 Identities=13% Similarity=0.158 Sum_probs=66.6
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYL 238 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~~~ 238 (1566)
-+..-+-|+||||+|-......++.|.|.|+.+.++|+|.|||.||+-+--. .-|.+.+.. -......||++...
T Consensus 52 GL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~---~~g~~~~El--Ift~LhaGgkFdd~ 126 (1135)
T PLN03128 52 GLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQNTISVYNNGKGIPVEIHK---EEGVYVPEL--IFGHLLTSSNFDDN 126 (1135)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCCeEEEEecCccccCCCCC---CCCCccceE--EEEeeccccccCCc
Confidence 5788899999999998534445688888888778999999999999875221 112211110 00011224443221
Q ss_pred --CCCccccccchhhhhhcccCEEEEEEee
Q 000400 239 --TPFFGMFGYGGPIASMHLGRRALVSSKT 266 (1566)
Q Consensus 239 --r~~IGrFGvGlK~AsfsLG~~ltV~TK~ 266 (1566)
.-.-|+.|+|.+. +=.+...++|.++.
T Consensus 127 ~ykvSGGlhGvGasv-vNaLS~~f~Vev~d 155 (1135)
T PLN03128 127 EKKTTGGRNGYGAKL-ANIFSTEFTVETAD 155 (1135)
T ss_pred cceeeccccCCCCeE-EEeecCeEEEEEEE
Confidence 3457899999763 44677889999983
No 37
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=96.54 E-value=0.016 Score=52.97 Aligned_cols=88 Identities=26% Similarity=0.284 Sum_probs=55.4
Q ss_pred HHHHHHHHhhcchhhcccCCCCceEEEEEeecC--CeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCC
Q 000400 160 FETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~--~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~~ 237 (1566)
+..++.||++||+++... ....|.|.+..+. -.|.|.|+|.||++..+..+.. ... . ..
T Consensus 1 l~~~~~~ll~Na~~~~~~--~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~--~~~-------------~--~~ 61 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPE--GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFE--RFS-------------D--GS 61 (103)
T ss_pred CHHHHHHHHHHHHHhCcC--CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhh--hhh-------------c--CC
Confidence 357899999999999532 1345666666554 3578999999999998865211 000 0 01
Q ss_pred CCCCccccccchhhh---hhcccCEEEEEEee
Q 000400 238 LTPFFGMFGYGGPIA---SMHLGRRALVSSKT 266 (1566)
Q Consensus 238 ~r~~IGrFGvGlK~A---sfsLG~~ltV~TK~ 266 (1566)
.....+.+|+|++.+ +..+|..+.+.+..
T Consensus 62 ~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~ 93 (103)
T cd00075 62 RSRKGGGTGLGLSIVKKLVELHGGRIEVESEP 93 (103)
T ss_pred CCCCCCccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 122345678887642 23356688887765
No 38
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=96.33 E-value=0.033 Score=51.76 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcchhhcccCCCCceEEEEEeecC--CeEEEEECCCCCChHhHhH
Q 000400 160 FETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENS 211 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~--~~I~I~DNG~GMS~deL~~ 211 (1566)
+..++.|+++|++++... ...|.|.+..++ -.|.|.|+|.||+.+++..
T Consensus 6 l~~~~~~l~~n~~~~~~~---~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~ 56 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPE---GGRITVTLERDGDHLEITVEDNGPGIPPEDLEK 56 (111)
T ss_pred HHHHHHHHHHHHHhcCCC---CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 668899999999999422 245777776654 3588999999999998865
No 39
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.29 E-value=0.009 Score=81.17 Aligned_cols=131 Identities=11% Similarity=0.127 Sum_probs=78.9
Q ss_pred cccccccCCCHHHH--hhCCCCCCHHHHHHHHhhcchhhcccC---CCCceEEEEEeecCCeEEEEECCCCCChHhHhHh
Q 000400 138 FENMWDLTPDTDLL--RELPEDYTFETALADLIDNSLQAVWTN---AKNERRLISVNIAEDKISVFDTGPGMDSTDENSI 212 (1566)
Q Consensus 138 ~~n~idL~Pd~~lL--~sLg~~Ysl~sALAELVDNSIDA~~~N---a~AtrI~I~I~~d~~~I~I~DNG~GMS~deL~~a 212 (1566)
++.+|-+.+....+ +.....--+...+-|+||||+|-..+. ..++.|.|.|+.+.++|+|+|||.||+-+- +.
T Consensus 34 ~~~~wv~~~~~~~m~~~~v~~vpGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~-h~- 111 (1388)
T PTZ00108 34 TEDMWVYDEEKNRMVYKTITYVPGLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEENGEISVYNDGEGIPVQI-HK- 111 (1388)
T ss_pred ccceeeecccccccccccccccchhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccCCeEEEEecCCcccCCC-CC-
Confidence 35556555543311 112223357889999999999986543 356788888887778999999999997652 11
Q ss_pred hhccccccchhccccccccCCCCCC--CCCCccccccchhhhhhcccCEEEEEEeeCCCceEEE
Q 000400 213 VKWGKMGASLHRASKAQGIGGKPPY--LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYT 274 (1566)
Q Consensus 213 ~kwG~~g~S~kR~~~a~~~ggk~~~--~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~~v~e 274 (1566)
..+.+.+.. -......||++.. ..-.-|+-|+|.+ .+=.+...++|.+++......|.
T Consensus 112 -~~~~~~pEl--Ift~L~aGgkfdd~~yKvSGGlhGVGas-vvNalS~~f~Vev~r~~~gk~y~ 171 (1388)
T PTZ00108 112 -EHKIYVPEM--IFGHLLTSSNYDDTEKRVTGGRNGFGAK-LTNIFSTKFTVECVDSKSGKKFK 171 (1388)
T ss_pred -CCCCccceE--EEEEeeccccCCCCceeeecccccCCcc-ccccccceEEEEEEECCCCCEEE
Confidence 112111110 0001122343322 1345789999976 45568889999999873333333
No 40
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.19 E-value=0.085 Score=69.67 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=42.2
Q ss_pred CCCceeeeccccccccchHHHHHHHHhcccccceEEEccHHHHHHHHHhh
Q 000400 1304 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYE 1353 (1566)
Q Consensus 1304 ~~gV~G~VA~Lg~V~d~~~s~als~~lG~~~m~~VV~~t~e~ak~ie~yl 1353 (1566)
..-..|.++...++.+++++.|++.+||+ .+++-+|.+-..+..|....
T Consensus 492 ~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n-~lnaFiv~sh~D~~~Lr~i~ 540 (1074)
T KOG0250|consen 492 QTPPKGPLGKYVTLKEPKWALAIERCLGN-LLNAFIVTSHKDARILRAIM 540 (1074)
T ss_pred CCCCCCCccceeEecCcHHHHHHHHHHHH-hhhhheeCCHhhHHHHHHHH
Confidence 45578999999999999999999999998 68898998888888887555
No 41
>PRK10604 sensor protein RstB; Provisional
Probab=96.09 E-value=0.036 Score=67.00 Aligned_cols=99 Identities=18% Similarity=0.260 Sum_probs=62.6
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+..++..||+||+.+. ...|.|++..+++ .|.|.|||.||+++++..+..-. + |...
T Consensus 319 ~l~~vl~NLl~NAik~~-----~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f---~---r~~~--------- 378 (433)
T PRK10604 319 LMERVLDNLLNNALRYA-----HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPF---V---RLDP--------- 378 (433)
T ss_pred HHHHHHHHHHHHHHHhC-----CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCC---c---cCCC---------
Confidence 36789999999999983 4567787776544 48899999999999987521100 0 0000
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
.....-|-+|+|+.. .+-.+|-++++.+...+ ...+++.+.
T Consensus 379 ~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~-G~~f~i~lP 422 (433)
T PRK10604 379 SRDRATGGCGLGLAIVHSIALAMGGSVNCDESELG-GARFSFSWP 422 (433)
T ss_pred CCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCC-eeEEEEEEe
Confidence 001123456888754 34457888999887543 334444443
No 42
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=96.09 E-value=0.017 Score=71.79 Aligned_cols=101 Identities=29% Similarity=0.358 Sum_probs=69.9
Q ss_pred CCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCCe--EEEEECCCCCChHhHhHhhhccccccchhccccccccCCCC
Q 000400 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDK--ISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1566)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~~--I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~ 235 (1566)
..+.+.|.-|||||+||.+.....+.|.+.+...++. |.|.|||+||+++....+. ..|.|.+
T Consensus 426 ~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iF---e~G~Stk------------ 490 (537)
T COG3290 426 HDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIF---EKGVSTK------------ 490 (537)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHH---hcCcccc------------
Confidence 4688999999999999987533446677777766554 6799999999999886532 2222221
Q ss_pred CCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000400 236 PYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1566)
Q Consensus 236 ~~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~LD~ 279 (1566)
.-+.-|+|+++ ..=.+|-.++|.+.. +....+.+.|.+
T Consensus 491 -----~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~-~~Gt~F~i~iP~ 531 (537)
T COG3290 491 -----NTGGRGIGLYLVKQLVERLGGSIEVESEK-GQGTRFSIYIPK 531 (537)
T ss_pred -----CCCCCchhHHHHHHHHHHcCceEEEeeCC-CCceEEEEECCC
Confidence 13344777764 455688999999974 334566666665
No 43
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.07 E-value=0.014 Score=79.43 Aligned_cols=101 Identities=12% Similarity=0.168 Sum_probs=67.6
Q ss_pred CCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccc--hhccccccccCCCC
Q 000400 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGAS--LHRASKAQGIGGKP 235 (1566)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~~I~I~DNG~GMS~deL~~a~kwG~~g~S--~kR~~~a~~~ggk~ 235 (1566)
--+...+-|+||||+|-.......+.|.|.|+.+.++|+|+|||.||+-+ ++. ..|.+.+. .. ....||++
T Consensus 76 pGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~gsIsV~DnGRGIPV~-iH~--~eg~~~pElIft----~LhAGgkF 148 (1465)
T PLN03237 76 PGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQNLISVYNNGDGVPVE-IHQ--EEGVYVPEMIFG----HLLTSSNY 148 (1465)
T ss_pred chhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCCCEEEEEecCccccCC-CCC--CCCCccceEEEE----eeeccccC
Confidence 35788999999999998534345678888888888999999999999865 211 12222111 00 11224444
Q ss_pred CC--CCCCccccccchhhhhhcccCEEEEEEee
Q 000400 236 PY--LTPFFGMFGYGGPIASMHLGRRALVSSKT 266 (1566)
Q Consensus 236 ~~--~r~~IGrFGvGlK~AsfsLG~~ltV~TK~ 266 (1566)
.. -.-.-|+-|+|.+. +=.+...++|.++.
T Consensus 149 dd~~yKvSGGlhGVGasv-vNaLS~~f~Vev~D 180 (1465)
T PLN03237 149 DDNEKKTTGGRNGYGAKL-TNIFSTEFVIETAD 180 (1465)
T ss_pred CCCcceeeccccccCccc-cccccCeeEEEEEE
Confidence 22 13457899999763 44677899999983
No 44
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=95.96 E-value=0.0089 Score=75.06 Aligned_cols=103 Identities=18% Similarity=0.159 Sum_probs=66.8
Q ss_pred CCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccc--hhccccccccCCCC
Q 000400 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGAS--LHRASKAQGIGGKP 235 (1566)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~~I~I~DNG~GMS~deL~~a~kwG~~g~S--~kR~~~a~~~ggk~ 235 (1566)
..+-.-+.|+||||+|-.... -++.|.|.++ ..++|+|.|||+||+-+-=.. .+....- .. ..-.||++
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG-~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~---~~~~~vEvI~T----~LHAGGKF 105 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAG-YADRIDVTLH-EDGSISVEDNGRGIPVDIHPK---EKVSAVEVIFT----VLHAGGKF 105 (635)
T ss_pred CcceeeEeEeeechHhHHhhC-cCcEEEEEEc-CCCeEEEEECCCCCccccCCC---CCCCceEEEEE----eeccCccc
Confidence 456777899999999985443 5777777776 778899999999999774211 1111100 11 12224544
Q ss_pred CCC--CCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000400 236 PYL--TPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1566)
Q Consensus 236 ~~~--r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~ 270 (1566)
..+ .-.=|..|||.+ ..=.|...+.|.+++.|..
T Consensus 106 d~~~YkvSGGLHGVG~S-VVNALS~~l~v~v~r~gk~ 141 (635)
T COG0187 106 DNDSYKVSGGLHGVGVS-VVNALSTWLEVEVKRDGKI 141 (635)
T ss_pred CCCccEeecCCCccceE-EEecccceEEEEEEECCEE
Confidence 322 223578999964 4446888999999997643
No 45
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=95.93 E-value=0.039 Score=64.24 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=62.5
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+..++..||+||+.+.. ....|.|.+..+++ .|.|.|||.||+++++..+..-.. |.
T Consensus 247 ~l~~il~nLi~NA~k~~~---~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~------~~----------- 306 (356)
T PRK10755 247 LLRLLLRNLVENAHRYSP---EGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFV------RM----------- 306 (356)
T ss_pred HHHHHHHHHHHHHHhhCC---CCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeE------eC-----------
Confidence 366899999999999841 23457777765543 588999999999999865211100 00
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
...-+-+|+|+.. -+-.+|.++.+.|...+....+.+.+.
T Consensus 307 --~~~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p 349 (356)
T PRK10755 307 --DSRYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLP 349 (356)
T ss_pred --CCCCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEec
Confidence 0011235788654 233578899999987523444555543
No 46
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=95.91 E-value=0.0088 Score=77.97 Aligned_cols=77 Identities=13% Similarity=0.224 Sum_probs=48.7
Q ss_pred ecCCcccccccccccccCCCHHHHhhCCCCCCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCCeEEEEECCCCCChH
Q 000400 128 YDGSGEIAKTFENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDST 207 (1566)
Q Consensus 128 ~~g~~~l~~~~~n~idL~Pd~~lL~sLg~~Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~~I~I~DNG~GMS~d 207 (1566)
|+.+++.-=..-+.+..+|.. .+-.....-+...+-|+||||+|-... ..++.|.|.++- .++|+|.|||+||+-+
T Consensus 100 Y~a~~I~vLeGLEaVRkRPGM--YIGst~~~GLhhLv~EIlDNSVDE~la-G~~~~I~V~i~~-DgsItV~DnGRGIPvd 175 (903)
T PTZ00109 100 YDADDIVVLEGLEAVRKRPGM--YIGNTDEKGLHQLLFEILDNSVDEYLA-GECNKITVVLHK-DGSVEISDNGRGIPCD 175 (903)
T ss_pred CChHhCeehhccHHHhcCCCc--eeCCCCCCcceEEEEEEeeccchhhcc-CCCcEEEEEEcC-CCeEEEEeCCcccccc
Confidence 444444333334445555533 221111235677889999999997543 357777777754 5789999999999875
Q ss_pred h
Q 000400 208 D 208 (1566)
Q Consensus 208 e 208 (1566)
-
T Consensus 176 ~ 176 (903)
T PTZ00109 176 V 176 (903)
T ss_pred c
Confidence 3
No 47
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=95.79 E-value=0.053 Score=64.65 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=60.2
Q ss_pred HHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCC
Q 000400 160 FETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~~ 237 (1566)
+..++.+||+||+.+. ...|.|++..+++ .|+|.|||.||+.+++..+ | ...++. .. .
T Consensus 354 l~~~l~nli~NA~~~~-----~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~i--f-~~~~~~---~~---------~ 413 (461)
T PRK09470 354 LASALENIVRNALRYS-----HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQI--F-RPFYRV---DE---------A 413 (461)
T ss_pred HHHHHHHHHHHHHHhC-----CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHh--c-CCCccC---Cc---------c
Confidence 5678999999999983 3457777766544 4889999999999998652 1 111100 00 0
Q ss_pred CCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEE
Q 000400 238 LTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHL 277 (1566)
Q Consensus 238 ~r~~IGrFGvGlK~A---sfsLG~~ltV~TK~~gs~~v~el~L 277 (1566)
.....+.+|+|+..+ ...+|..+.+.|...+ ...+.+.+
T Consensus 414 ~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~-Gt~~~i~l 455 (461)
T PRK09470 414 RDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLG-GLRLTIWL 455 (461)
T ss_pred cCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCC-eEEEEEEe
Confidence 011224557887642 3457778999887644 33344443
No 48
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=95.68 E-value=0.072 Score=64.03 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=63.4
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+..++..|++||+++.. ....|.|.+..+.+ .|+|.|||.||+++++..+..- .++.+ .
T Consensus 317 ~l~~vl~NLl~NAik~~~---~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~---f~~~~---~--------- 378 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTP---EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTER---FYRVD---K--------- 378 (430)
T ss_pred HHHHHHHHHHHHHHhcCC---CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccC---ccccc---C---------
Confidence 478999999999999952 23456776665443 5889999999999998753111 10000 0
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000400 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~LD~ 279 (1566)
......+-.|+|+.. .+-..|.++.+.|... ....+.+.+..
T Consensus 379 ~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~~~-~Gt~f~i~lP~ 423 (430)
T PRK11006 379 ARSRQTGGSGLGLAIVKHALSHHDSRLEIESEVG-KGTRFSFVLPE 423 (430)
T ss_pred CCCCCCCCCchHHHHHHHHHHHCCCEEEEEecCC-CceEEEEEech
Confidence 001112334788754 2334788999998764 33455666654
No 49
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=95.59 E-value=0.058 Score=64.23 Aligned_cols=88 Identities=19% Similarity=0.171 Sum_probs=56.0
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+..++..||+||+.+ +...|.|.+..+++ .|+|.|||.||+++++..+..-+. | + .
T Consensus 331 ~l~~il~NLl~NA~k~-----~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~------~-------~---~ 389 (435)
T PRK09467 331 AIKRALANLVVNAARY-----GNGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFT------R-------G---D 389 (435)
T ss_pred HHHHHHHHHHHHHHHh-----CCCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcc------c-------C---C
Confidence 3567899999999988 34567777766544 488999999999999875221110 0 0 0
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCC
Q 000400 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKV 268 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~A---sfsLG~~ltV~TK~~g 268 (1566)
..+.. +-+|+|+..+ +-..|..+++.+...+
T Consensus 390 ~~~~~-~g~GlGL~iv~~i~~~~~g~l~i~~~~~~ 423 (435)
T PRK09467 390 SARGS-SGTGLGLAIVKRIVDQHNGKVELGNSEEG 423 (435)
T ss_pred CCCCC-CCeehhHHHHHHHHHHCCCEEEEEECCCC
Confidence 01111 3467887542 2236778888876544
No 50
>PRK10364 sensor protein ZraS; Provisional
Probab=95.59 E-value=0.059 Score=65.17 Aligned_cols=95 Identities=22% Similarity=0.224 Sum_probs=61.4
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+..++..|++||++|.. ....|.|.+..+++ .|.|.|||.||+++.+..+..-+ ++ .+
T Consensus 348 ~l~~il~NLl~NA~k~~~---~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~---~~-------------~k 408 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIG---QHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPY---FT-------------TK 408 (457)
T ss_pred HHHHHHHHHHHHHHHhcC---CCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCcc---cc-------------CC
Confidence 477899999999999952 24567777766543 58899999999999887532111 11 00
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
. +-.|+|+.. .+-.+|-++.+.+...+ ...+++.+.
T Consensus 409 ----~-~g~GlGL~iv~~~v~~~gG~i~i~s~~~~-Gt~f~i~lP 447 (457)
T PRK10364 409 ----A-EGTGLGLAVVHNIVEQHGGTIQVASQEGK-GATFTLWLP 447 (457)
T ss_pred ----C-CCCcccHHHHHHHHHHCCCEEEEEeCCCC-cEEEEEEec
Confidence 1 123777654 23347788998887543 344555554
No 51
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=95.35 E-value=0.021 Score=72.62 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=61.1
Q ss_pred CHHHHHHHHhhcchhhcccC--CCCceEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTN--AKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~N--a~AtrI~I~I~~d~~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
-+...+-|+||||+|-.... ..+++|.|.++ .++|+|.|||.||+-+--.....-+..++.. -......|++..
T Consensus 45 GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~--i~t~LhaGgkFd 120 (602)
T PHA02569 45 GLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVA--AWTRTKAGSNFD 120 (602)
T ss_pred cceeeeehhhhhhhhhhhccCCCCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEE--EEEeeccccccC
Confidence 35556679999999975431 13778777777 7789999999999764321100000111000 000112244442
Q ss_pred C-CCCCccccccchhhhhhcccCEEEEEEeeCC
Q 000400 237 Y-LTPFFGMFGYGGPIASMHLGRRALVSSKTKV 268 (1566)
Q Consensus 237 ~-~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~g 268 (1566)
. -.-.-|+.|+|.+ ..=.|...++|.++..+
T Consensus 121 ~~ykvSGGlhGVG~s-vvNaLS~~~~V~v~~~~ 152 (602)
T PHA02569 121 DTNRVTGGMNGVGSS-LTNFFSVLFIGETCDGK 152 (602)
T ss_pred CcceeeCCcCCccce-eeeccchhhheEEEcCC
Confidence 1 1235789999976 44467788888875533
No 52
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=95.30 E-value=0.11 Score=61.70 Aligned_cols=50 Identities=22% Similarity=0.428 Sum_probs=38.4
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhH
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENS 211 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~ 211 (1566)
.+..++.+|++||+.+.. ....|.|++..+++ .|+|.|||.||+++.+..
T Consensus 353 ~l~~~~~nll~Nai~~~~---~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~ 404 (457)
T TIGR01386 353 MFRRAISNLLSNALRHTP---DGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSR 404 (457)
T ss_pred HHHHHHHHHHHHHHHcCC---CCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHH
Confidence 367889999999999841 22467777666544 588999999999998865
No 53
>PRK09303 adaptive-response sensory kinase; Validated
Probab=95.29 E-value=0.096 Score=62.58 Aligned_cols=98 Identities=18% Similarity=0.245 Sum_probs=59.4
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEee-cCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNI-AED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~-d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~ 235 (1566)
.+..+|..||+||+.+.. ....|.|.+.. .+. .|.|.|||.||+.+++..+..- ..+.+
T Consensus 272 ~l~qvl~NLl~NAik~~~---~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~p---f~~~~------------ 333 (380)
T PRK09303 272 RIRQVLLNLLDNAIKYTP---EGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFED---RVRLP------------ 333 (380)
T ss_pred HHHHHHHHHHHHHHhcCC---CCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccC---ceeCC------------
Confidence 377899999999999942 22356666543 333 4889999999999998652110 00000
Q ss_pred CCCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEE
Q 000400 236 PYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHL 277 (1566)
Q Consensus 236 ~~~r~~IGrFGvGlK~A---sfsLG~~ltV~TK~~gs~~v~el~L 277 (1566)
. ....+-+|+|+..+ +-.+|..+.|.|...+ ...+.+.+
T Consensus 334 -~-~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~-Gt~f~i~l 375 (380)
T PRK09303 334 -R-DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQ-GSCFHFTL 375 (380)
T ss_pred -C-CCCCCcccccHHHHHHHHHHcCCEEEEEecCCC-ccEEEEEE
Confidence 0 11123367887542 3357889999887643 23344433
No 54
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=95.21 E-value=0.096 Score=63.87 Aligned_cols=98 Identities=24% Similarity=0.299 Sum_probs=61.8
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+..++.+|++||++|.... ....|.|++...++ .|.|.|||.||+++++..+..- +.+
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~-~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~---~~~--------------- 493 (542)
T PRK11086 433 ELITILGNLIENALEAVGGE-EGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDK---GYS--------------- 493 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcC-CCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhC---CCc---------------
Confidence 36788999999999995322 34467777666554 4789999999999998753110 100
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000400 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~LD~ 279 (1566)
.+. +-.|+|+.. -.-..|-++.+.|... ....+++.+..
T Consensus 494 --~~~-~g~GlGL~iv~~iv~~~~G~i~v~s~~~-~G~~f~i~lP~ 535 (542)
T PRK11086 494 --TKG-SNRGVGLYLVKQSVENLGGSIAVESEPG-VGTQFFVQIPW 535 (542)
T ss_pred --cCC-CCCcCcHHHHHHHHHHcCCEEEEEeCCC-CcEEEEEEEeC
Confidence 001 123777653 2334778899988753 34455555543
No 55
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=95.06 E-value=0.14 Score=63.23 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=63.1
Q ss_pred HHHHHHHHhhcchhhcccCC-CCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 160 FETALADLIDNSLQAVWTNA-KNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na-~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
+...+.+|++||++|...+. +...|.|.+....+ .|.|.|||.||++++...+..- +++. +
T Consensus 433 l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~---~~~t-----------k-- 496 (545)
T PRK15053 433 FAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ---GVST-----------R-- 496 (545)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC---CCCC-----------C--
Confidence 55689999999999965442 23567777766544 4889999999999998753221 1111 0
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
....|..|+|+.. -+-..|..++|.|.. +....+++.+.
T Consensus 497 --~~~~~g~GlGL~ivk~iv~~~~G~i~v~s~~-~~Gt~f~i~lP 538 (545)
T PRK15053 497 --ADEPGEHGIGLYLIASYVTRCGGVITLEDND-PCGTLFSIFIP 538 (545)
T ss_pred --CCCCCCceeCHHHHHHHHHHcCCEEEEEECC-CCeEEEEEEEC
Confidence 0112334777754 233477789998875 33445566554
No 56
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.99 E-value=0.1 Score=57.32 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=39.4
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecC--CeEEEEECCCCCChHhHhH
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENS 211 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~--~~I~I~DNG~GMS~deL~~ 211 (1566)
.+..++..|++||++|.. ...|.|.+.... -.|.|.|||.||+.+.+..
T Consensus 228 ~l~~vl~nLi~NAi~~~~----~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~ 278 (336)
T COG0642 228 RLRQVLVNLLSNAIKYTP----GGEITISVRQDDEQVTISVEDTGPGIPEEELER 278 (336)
T ss_pred HHHHHHHHHHHHHhccCC----CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHH
Confidence 477899999999999941 456677666554 4688999999999999765
No 57
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=94.94 E-value=0.12 Score=66.49 Aligned_cols=86 Identities=26% Similarity=0.212 Sum_probs=55.6
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+..++.+||+||+++.. ....|.|++...++ .|.|.|||.||+++.+.+ +.-.... +
T Consensus 579 ~l~~vl~nLl~NAik~~~---~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~--~lF~pf~-------------~-- 638 (679)
T TIGR02916 579 RLERVLGHLVQNALEATP---GEGRVAIRVERECGAARIEIEDSGCGMSPAFIRE--RLFKPFD-------------T-- 638 (679)
T ss_pred HHHHHHHHHHHHHHHhCC---CCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHH--hcCCCCC-------------C--
Confidence 477899999999999952 23457777776444 488999999999998432 1110000 0
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeC
Q 000400 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTK 267 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~A---sfsLG~~ltV~TK~~ 267 (1566)
.+. +-.|+|+..+ +-.+|-++++.|...
T Consensus 639 --~~~-~G~GLGL~i~~~iv~~~gG~i~v~s~~g 669 (679)
T TIGR02916 639 --TKG-AGMGIGVYECRQYVEEIGGRIEVESTPG 669 (679)
T ss_pred --CCC-CCcchhHHHHHHHHHHcCCEEEEEecCC
Confidence 001 3347776542 334888999998764
No 58
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=94.90 E-value=0.088 Score=64.00 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=37.6
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeec--C-CeEEEEECCCCCChHhHhH
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA--E-DKISVFDTGPGMDSTDENS 211 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d--~-~~I~I~DNG~GMS~deL~~ 211 (1566)
.+..++.+|++||+.+.. ....|.|++... . -.|.|.|||.||+.+++..
T Consensus 500 ~l~~~~~nli~na~~~~~---~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~ 552 (607)
T PRK11360 500 LLKQVLLNILINAVQAIS---ARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKK 552 (607)
T ss_pred HHHHHHHHHHHHHHHHhc---CCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhh
Confidence 377899999999999842 123566666543 2 4588999999999998864
No 59
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=94.82 E-value=0.14 Score=61.45 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=60.5
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+..++..||+||+.+.. ....|.|.+..+.+ .|.|.|||.||+++++.++ | .|... + ..
T Consensus 352 ~l~qvl~nll~NAi~~~~---~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~l--f-------~~~~~----~-~~- 413 (466)
T PRK10549 352 RLMQLFNNLLENSLRYTD---SGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKL--F-------ERFYR----T-EG- 413 (466)
T ss_pred HHHHHHHHHHHHHHHhCC---CCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHh--c-------cCccc----C-CC-
Confidence 366889999999999841 22457777766554 4778999999999998652 1 01000 0 00
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEE
Q 000400 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHL 277 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~L 277 (1566)
......|..|+|+.. -+-.+|.++.+.+...+ ...+.+.+
T Consensus 414 ~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~-G~~~~i~l 456 (466)
T PRK10549 414 SRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFG-GVSITVEL 456 (466)
T ss_pred CcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCC-eEEEEEEc
Confidence 001122345788654 23347888999887644 33344444
No 60
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=94.78 E-value=0.13 Score=61.38 Aligned_cols=51 Identities=25% Similarity=0.424 Sum_probs=39.4
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHh
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSI 212 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a 212 (1566)
.+..++.+||.||+.+. .+...|.|++...++ .|+|.|||.||+++++..+
T Consensus 368 ~l~~vl~nli~Na~~~~---~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i 420 (475)
T PRK11100 368 LLRQALGNLLDNAIDFS---PEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRI 420 (475)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHH
Confidence 36788999999999984 133567777766544 4889999999999998763
No 61
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=94.63 E-value=0.14 Score=67.04 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=61.4
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+..+|..||.||+.++ ....|.|++...++ .|+|.|||.||+++++..+..-.. + .
T Consensus 513 ~l~~il~NLl~NAik~~----~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~------------~-~---- 571 (921)
T PRK15347 513 RLRQILVNLLGNAVKFT----ETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFY------------Q-A---- 571 (921)
T ss_pred HHHHHHHHHHHHHhhcC----CCCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcc------------c-C----
Confidence 37789999999999995 33457777766554 478999999999999876321100 0 0
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~A---sfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
....+-.|+|+..+ +-.+|.+++|.|... ....+++.+.
T Consensus 572 --~~~~~g~GLGL~i~~~~~~~~gG~i~i~s~~~-~Gt~f~i~lp 613 (921)
T PRK15347 572 --DTHSQGTGLGLTIASSLAKMMGGELTLFSTPG-VGSCFSLVLP 613 (921)
T ss_pred --CCCCCCCchHHHHHHHHHHHcCCEEEEEecCC-CceEEEEEEE
Confidence 01123357777542 234778899988763 3334455444
No 62
>PRK10337 sensor protein QseC; Provisional
Probab=94.38 E-value=0.14 Score=61.38 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=53.5
Q ss_pred HHHHHHHHhhcchhhcccCCCCceEEEEEeecCCeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCCCC
Q 000400 160 FETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYLT 239 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~~~r 239 (1566)
+..++..||+||+.+.. ....|.| ......|+|.|||.||+++++..+.. |.. + .+ .
T Consensus 353 l~~vl~Nli~NA~k~~~---~~~~i~i--~~~~~~i~i~D~G~Gi~~~~~~~if~---------~f~---~----~~--~ 409 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSP---QGSVVDV--TLNARNFTVRDNGPGVTPEALARIGE---------RFY---R----PP--G 409 (449)
T ss_pred HHHHHHHHHHHHHhhCC---CCCeEEE--EEEeeEEEEEECCCCCCHHHHHHhcc---------ccc---C----CC--C
Confidence 56689999999999941 1123444 44445799999999999999865211 000 0 00 0
Q ss_pred CCccccccchhh---hhhcccCEEEEEEeeCC
Q 000400 240 PFFGMFGYGGPI---ASMHLGRRALVSSKTKV 268 (1566)
Q Consensus 240 ~~IGrFGvGlK~---AsfsLG~~ltV~TK~~g 268 (1566)
...+.+|+|+.. -+-..|-++++.+...+
T Consensus 410 ~~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~ 441 (449)
T PRK10337 410 QEATGSGLGLSIVRRIAKLHGMNVSFGNAPEG 441 (449)
T ss_pred CCCCccchHHHHHHHHHHHcCCEEEEEecCCC
Confidence 122346888654 23347888898887543
No 63
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=94.36 E-value=0.21 Score=64.83 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=61.4
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+..++..||+||+.+.. ....|.|.+..+++ .|+|.|||.||+++++..+..-. .+. + .
T Consensus 597 ~L~~il~NLI~NAik~s~---~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F---~t~-----------~-~ 658 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSP---EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSM---VSV-----------R-D 658 (703)
T ss_pred HHHHHHHHHHHHHHHHCC---CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCC---eec-----------C-C
Confidence 477899999999999842 23447777666544 48899999999999987531110 000 0 0
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEE
Q 000400 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLH 276 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~ 276 (1566)
.....-+-.|+|+.. -+-..|-++.+.+...+....+++.
T Consensus 659 ~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~ 701 (703)
T TIGR03785 659 QGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRIS 701 (703)
T ss_pred CCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEE
Confidence 001111236888764 3445788899988765334444443
No 64
>PRK10815 sensor protein PhoQ; Provisional
Probab=94.23 E-value=0.23 Score=61.52 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=60.5
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+..++..||+||+++. ...+.|.+..+++ .|+|.|||.||+++++..+..-+. | ..
T Consensus 378 ~l~~vl~NLi~NAik~~-----~~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f~------~----------~~ 436 (485)
T PRK10815 378 DFMEVMGNVLDNACKYC-----LEFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRGQ------R----------AD 436 (485)
T ss_pred HHHHHHHHHHHHHHHhc-----CCcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcc------c----------CC
Confidence 36789999999999994 3356777766544 488999999999999865311000 0 00
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~A---sfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
...+-.|+|+..+ +-..|-++.+.|...+ ...+++.+.
T Consensus 437 ---~~~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~-Gt~f~i~lp 477 (485)
T PRK10815 437 ---TLRPGQGLGLSVAREITEQYEGKISAGDSPLG-GARMEVIFG 477 (485)
T ss_pred ---CCCCCcchhHHHHHHHHHHcCCEEEEEECCCC-EEEEEEEEc
Confidence 0112258887642 2347888999887643 334555554
No 65
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=94.21 E-value=0.27 Score=55.26 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=56.4
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+..++.+|+.||+++.. ....|.|.+...++ .|.|.|||.||+.+.+..+..... +.. ..
T Consensus 229 ~l~~vl~nll~Nai~~~~---~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~---~~~-----------~~ 291 (333)
T TIGR02966 229 ELRSAFSNLVSNAIKYTP---EGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFY---RVD-----------KS 291 (333)
T ss_pred HHHHHHHHHHHHhheeCC---CCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCce---ecC-----------cc
Confidence 467899999999999842 23457777666543 488999999999998875321111 000 00
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeC
Q 000400 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTK 267 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~ 267 (1566)
.....-| .|+|+.. .+-.+|..+.+.|...
T Consensus 292 ~~~~~~g-~glGL~~~~~~~~~~gG~i~~~s~~~ 324 (333)
T TIGR02966 292 RSRDTGG-TGLGLAIVKHVLSRHHARLEIESELG 324 (333)
T ss_pred cccCCCC-CcccHHHHHHHHHHCCCEEEEEecCC
Confidence 0011122 3777653 2334788899988764
No 66
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=94.16 E-value=0.25 Score=58.80 Aligned_cols=52 Identities=21% Similarity=0.411 Sum_probs=37.5
Q ss_pred HHHHHHHHhhcchhhcccCCC-CceEEEEEeecCC--eEEEEECCCCCChHhHhH
Q 000400 160 FETALADLIDNSLQAVWTNAK-NERRLISVNIAED--KISVFDTGPGMDSTDENS 211 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~-AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~ 211 (1566)
+..++..|+.||+++...... ...|.|.+....+ .|+|.|||.||+.+....
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~ 442 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYK 442 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHH
Confidence 688999999999999644311 1235554444433 588999999999998865
No 67
>PRK09835 sensor kinase CusS; Provisional
Probab=94.13 E-value=0.27 Score=59.22 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=59.7
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhh-ccccccchhccccccccCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVK-WGKMGASLHRASKAQGIGGKP 235 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~k-wG~~g~S~kR~~~a~~~ggk~ 235 (1566)
.+..++..||+||+.+.. ....|.|.+..+.+ .|.|.|||.||+++++..+.. |....
T Consensus 375 ~l~~vl~nll~Na~~~~~---~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~---------------- 435 (482)
T PRK09835 375 MLRRAISNLLSNALRYTP---AGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVD---------------- 435 (482)
T ss_pred HHHHHHHHHHHHHHhcCC---CCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCC----------------
Confidence 478899999999999842 23457777765443 588999999999999875211 10000
Q ss_pred CCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEE
Q 000400 236 PYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHL 277 (1566)
Q Consensus 236 ~~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~L 277 (1566)
+......+-.|+|+.. -.-.+|.++++.|... ...+.+.+
T Consensus 436 ~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~~~--g~~~~i~l 478 (482)
T PRK09835 436 PSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDAR--GTRFVISL 478 (482)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHCCCEEEEEECCC--cEEEEEEe
Confidence 0001111235777643 2334778899988642 34444444
No 68
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=94.08 E-value=0.2 Score=63.11 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=46.0
Q ss_pred hhCCCCCCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhH
Q 000400 152 RELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENS 211 (1566)
Q Consensus 152 ~sLg~~Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~ 211 (1566)
.-.+....+++.|--|+.||+||.... ...+|.|...-+++ .|+|.|||.|+.++-+.+
T Consensus 490 ~V~~~~iRLeQVLvNLl~NALDA~~~~-~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~ 550 (603)
T COG4191 490 WVMANEIRLEQVLVNLLQNALDAMAGQ-EDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPH 550 (603)
T ss_pred eeecchhhHHHHHHHHHHHHHHHhcCC-CCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHh
Confidence 334445679999999999999997553 45677777766554 477999999999998865
No 69
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=93.99 E-value=0.2 Score=66.06 Aligned_cols=98 Identities=18% Similarity=0.261 Sum_probs=61.8
Q ss_pred CCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC---eEEEEECCCCCChHhHhHhhh-ccccccchhccccccccCC
Q 000400 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAED---KISVFDTGPGMDSTDENSIVK-WGKMGASLHRASKAQGIGG 233 (1566)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~---~I~I~DNG~GMS~deL~~a~k-wG~~g~S~kR~~~a~~~gg 233 (1566)
..+..+|..||+||+.+. ....|.|.+..... .|.|.|||.||+++++..+.. |.. +.
T Consensus 578 ~~l~~il~nLi~NAik~~----~~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~--------------~~ 639 (968)
T TIGR02956 578 PRIRQVLINLVGNAIKFT----DRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQ--------------AD 639 (968)
T ss_pred HHHHHHHHHHHHHHHhhC----CCCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhc--------------cC
Confidence 357789999999999995 33457777765433 489999999999999876311 110 00
Q ss_pred CCCCCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 234 KPPYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 234 k~~~~r~~IGrFGvGlK~A---sfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
.....|-.|+|+..+ +-.+|-++.|.|...+ ...+.+.+.
T Consensus 640 ----~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~-Gt~f~~~lp 682 (968)
T TIGR02956 640 ----GRRRSGGTGLGLAISQRLVEAMDGELGVESELGV-GSCFWFTLP 682 (968)
T ss_pred ----CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCC-cEEEEEEEE
Confidence 011223457777542 3347888999987642 234444443
No 70
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=93.94 E-value=0.39 Score=49.02 Aligned_cols=48 Identities=23% Similarity=0.392 Sum_probs=34.8
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCCe--EEEEECCCCCCh
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAEDK--ISVFDTGPGMDS 206 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~~--I~I~DNG~GMS~ 206 (1566)
.+..|+.|++.||+.+.........|.|.+...++. |.|.|||.||+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~~ 88 (137)
T TIGR01925 39 DIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIEN 88 (137)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcCc
Confidence 477899999999997632212235677777765544 779999999973
No 71
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=93.91 E-value=0.19 Score=59.77 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=61.4
Q ss_pred CCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCC
Q 000400 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKP 235 (1566)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~ 235 (1566)
..++-++.|.+-|++-. ++|+.+.|.+...++ .+.|.|||.|-+.+..
T Consensus 278 ~~l~rivQEaltN~~rH----a~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~-------------------------- 327 (365)
T COG4585 278 DALFRIVQEALTNAIRH----AQATEVRVTLERTDDELRLEVIDNGVGFDPDKE-------------------------- 327 (365)
T ss_pred HHHHHHHHHHHHHHHhc----cCCceEEEEEEEcCCEEEEEEEECCcCCCcccc--------------------------
Confidence 46778889999999888 589999999988655 4779999999997742
Q ss_pred CCCCCCcccccc-chhhhhhcccCEEEEEEeeCCCceEEEE
Q 000400 236 PYLTPFFGMFGY-GGPIASMHLGRRALVSSKTKVSKEVYTL 275 (1566)
Q Consensus 236 ~~~r~~IGrFGv-GlK~AsfsLG~~ltV~TK~~gs~~v~el 275 (1566)
. |-||+ |++.=+-.+|-+++|.|.. |.....++
T Consensus 328 -----~-~~~GL~~mreRv~~lgG~l~i~S~~-g~Gt~i~i 361 (365)
T COG4585 328 -----G-GGFGLLGMRERVEALGGTLTIDSAP-GQGTTVTI 361 (365)
T ss_pred -----C-CCcchhhHHHHHHHcCCEEEEEecC-CCceEEEE
Confidence 1 34566 6666677899999999998 44433333
No 72
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=93.87 E-value=0.15 Score=63.39 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=36.0
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChH
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDST 207 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~d 207 (1566)
.+..++.|+++||+.+. ++.+|.|++..+++ .|.|.|||.||+++
T Consensus 410 ~L~ril~nlL~NAiKha----~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 410 TLFRVCQEGLNNIVKHA----DASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHHhC----CCCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 46678999999999983 55678887776655 48899999999865
No 73
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=93.75 E-value=0.32 Score=51.93 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=39.9
Q ss_pred CCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHh
Q 000400 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDEN 210 (1566)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~ 210 (1566)
..+..|+.|++-||+.....+.....|.|.+....+ .|.|.|+|.||+++.+.
T Consensus 41 ~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~ 95 (161)
T PRK04069 41 EDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLK 95 (161)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHhc
Confidence 357899999999999996443223456777766543 58899999999988764
No 74
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=93.71 E-value=0.3 Score=64.32 Aligned_cols=96 Identities=19% Similarity=0.269 Sum_probs=61.6
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+..++..|++||+.+. ....|.|.+..++. .|.|.|||.||+++++..+..-.. +.
T Consensus 561 ~l~qil~NLl~NAik~~----~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~------------~~----- 619 (914)
T PRK11466 561 RIRQVITNLLSNALRFT----DEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFV------------QV----- 619 (914)
T ss_pred HHHHHHHHHHHHHHHhC----CCCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhh------------cC-----
Confidence 46789999999999994 34567777766544 488999999999999875311000 00
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~A---sfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
....|-.|+|+..+ +-.+|..++|.|...+ ...+.+.+.
T Consensus 620 --~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~-Gt~f~i~lP 661 (914)
T PRK11466 620 --SGKRGGTGLGLTISSRLAQAMGGELSATSTPEV-GSCFCLRLP 661 (914)
T ss_pred --CCCCCCCcccHHHHHHHHHHcCCEEEEEecCCC-CeEEEEEEE
Confidence 01123457777542 3347889999988643 334444444
No 75
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=93.60 E-value=0.34 Score=48.59 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=40.2
Q ss_pred CCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHh
Q 000400 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDEN 210 (1566)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~ 210 (1566)
..+..|+.|++-||+.+.........|.|.+....+ .|.|.|+|.|+++..+.
T Consensus 30 ~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~ 84 (125)
T PF13581_consen 30 DDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLP 84 (125)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhcc
Confidence 368899999999999996433223567777666544 47899999999988764
No 76
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=93.48 E-value=0.27 Score=56.88 Aligned_cols=94 Identities=21% Similarity=0.263 Sum_probs=57.3
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeec-------C-----CeEEEEECCCCCChHhHhHhhhccccccchhccc
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA-------E-----DKISVFDTGPGMDSTDENSIVKWGKMGASLHRAS 226 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d-------~-----~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~ 226 (1566)
.+..++..|++||+.|.. .....|.|.+... . -.|.|.|||.||+++.+..+ | ...++
T Consensus 237 ~l~~vl~nLl~NA~~~~~--~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~i--F-~~~~~----- 306 (348)
T PRK11073 237 QIEQVLLNIVRNALQALG--PEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTL--F-YPMVS----- 306 (348)
T ss_pred HHHHHHHHHHHHHHHHhc--cCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhc--c-CCccc-----
Confidence 478999999999999952 1234455554321 1 15889999999999987642 1 11110
Q ss_pred cccccCCCCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEE
Q 000400 227 KAQGIGGKPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHL 277 (1566)
Q Consensus 227 ~a~~~ggk~~~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~L 277 (1566)
. .. +--|+|+.. .+-..|-++.+.|...+ ..+++.+
T Consensus 307 --------~----~~-~g~GlGL~i~~~iv~~~gG~i~~~s~~~~--~~f~i~l 345 (348)
T PRK11073 307 --------G----RE-GGTGLGLSIARNLIDQHSGKIEFTSWPGH--TEFSVYL 345 (348)
T ss_pred --------C----CC-CCccCCHHHHHHHHHHcCCeEEEEecCCc--eEEEEEE
Confidence 0 01 123777643 34457888999887543 4455544
No 77
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=93.13 E-value=0.45 Score=62.73 Aligned_cols=96 Identities=23% Similarity=0.137 Sum_probs=61.7
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeec---------------CC--eEEEEECCCCCChHhHhHhhhccccccc
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA---------------ED--KISVFDTGPGMDSTDENSIVKWGKMGAS 221 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d---------------~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S 221 (1566)
.+..++..|++||+.+.. ....|.|.+... ++ .|.|.|||.||+++++..+.... .
T Consensus 560 ~L~qvl~NLl~NAik~~~---~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F---~- 632 (828)
T PRK13837 560 ELQQVLMNLCSNAAQAMD---GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPF---F- 632 (828)
T ss_pred HHHHHHHHHHHHHHHHcc---cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCc---c-
Confidence 478899999999999852 234566766543 22 48899999999999986521110 0
Q ss_pred hhccccccccCCCCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000400 222 LHRASKAQGIGGKPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1566)
Q Consensus 222 ~kR~~~a~~~ggk~~~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~LD~ 279 (1566)
+. + . +-.|+|+.. .+-.+|-++.|.|.. +....+.+.+..
T Consensus 633 ------------~~---~-~-~G~GLGL~i~~~iv~~~gG~i~v~s~~-g~Gt~f~i~LP~ 675 (828)
T PRK13837 633 ------------TT---R-A-GGTGLGLATVHGIVSAHAGYIDVQSTV-GRGTRFDVYLPP 675 (828)
T ss_pred ------------cC---C-C-CCCcchHHHHHHHHHHCCCEEEEEecC-CCeEEEEEEEeC
Confidence 00 1 1 445777753 233488899999875 334455555553
No 78
>PRK10490 sensor protein KdpD; Provisional
Probab=93.12 E-value=0.46 Score=63.48 Aligned_cols=99 Identities=20% Similarity=0.311 Sum_probs=61.2
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
-+..++..||+||+.+.. ....|.|.+..+++ .|.|.|||.||+++++..+..-. ++ + ..
T Consensus 778 ~L~qVL~NLL~NAik~s~---~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF---~~----------~-~~- 839 (895)
T PRK10490 778 LFERVLINLLENAVKYAG---AQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKF---AR----------G-NK- 839 (895)
T ss_pred HHHHHHHHHHHHHHHhCC---CCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCC---cc----------C-CC-
Confidence 478899999999999942 23457777766544 48899999999999986531110 00 0 00
Q ss_pred CCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 237 YLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
....+-.|+|+.. -.-.+|-++.+.|...+ ...+++.+.
T Consensus 840 --~~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~-Gt~f~i~LP 881 (895)
T PRK10490 840 --ESAIPGVGLGLAICRAIVEVHGGTIWAENRPEG-GACFRVTLP 881 (895)
T ss_pred --CCCCCCccHHHHHHHHHHHHcCCEEEEEECCCC-eEEEEEEeE
Confidence 0111224677653 22247888999887643 445555554
No 79
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=93.03 E-value=0.47 Score=63.41 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=61.6
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecC-----CeEEEEECCCCCChHhHhHhhhccccccchhccccccccCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAE-----DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGG 233 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~-----~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~gg 233 (1566)
.+..+|.-||.||+.++ ....|.|.+.... -.|.|.|||.||+++++.++..--. +.
T Consensus 565 ~L~QVL~NLL~NAik~t----~~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~---t~----------- 626 (894)
T PRK10618 565 ALRKILLLLLNYAITTT----AYGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFL---NQ----------- 626 (894)
T ss_pred HHHHHHHHHHHHHHHhC----CCCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccc---cC-----------
Confidence 47889999999999995 2345777776431 2488999999999999976311000 00
Q ss_pred CCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000400 234 KPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1566)
Q Consensus 234 k~~~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~LD~ 279 (1566)
+ ...+.. +-.|+|+.. -+-.+|-+++|.|... ....+.+.+..
T Consensus 627 ~-~~~~~~-~GtGLGLaI~k~Lve~~GG~I~v~S~~g-~GT~F~I~LPl 672 (894)
T PRK10618 627 T-QGDRYG-KASGLTFFLCNQLCRKLGGHLTIKSREG-LGTRYSIHLKM 672 (894)
T ss_pred C-CCCCCC-CCcChhHHHHHHHHHHcCCEEEEEECCC-CcEEEEEEEEc
Confidence 0 000111 123777643 2234889999999864 33455555553
No 80
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=92.76 E-value=0.45 Score=62.37 Aligned_cols=100 Identities=16% Similarity=0.259 Sum_probs=59.1
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEee--c-C----CeEEEEECCCCCChHhHhHhhhccccccchhcccccccc
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNI--A-E----DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGI 231 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~--d-~----~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ 231 (1566)
.+..+|..||+||+.+. ....|.|.+.. . . -.|.|.|||.||+++++..+..-.. |
T Consensus 408 ~l~~vl~NLl~NAik~~----~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~------~------- 470 (919)
T PRK11107 408 RLQQIITNLVGNAIKFT----ESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFR------Q------- 470 (919)
T ss_pred HHHHHHHHHHHHHhhcC----CCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhc------c-------
Confidence 36789999999999995 23345555543 1 1 2488999999999999875321000 0
Q ss_pred CCCCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 232 GGKPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 232 ggk~~~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
+.. ......|-.|+|+.. -+-.+|.+++|.|...+ ...+++.+.
T Consensus 471 ~~~--~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~-Gt~f~i~lp 517 (919)
T PRK11107 471 ADA--SISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNR-GSTFWFHLP 517 (919)
T ss_pred CCC--CCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCC-CEEEEEEEE
Confidence 000 001123445777753 23348889999987642 334444444
No 81
>PRK03660 anti-sigma F factor; Provisional
Probab=92.74 E-value=0.88 Score=46.88 Aligned_cols=49 Identities=27% Similarity=0.458 Sum_probs=35.6
Q ss_pred CCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCCh
Q 000400 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDS 206 (1566)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~ 206 (1566)
..+..|+.|++.||+...........|.|.+....+ .|.|.|+|.||+.
T Consensus 38 ~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 38 TEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 367899999999999764332222457777766544 4789999999985
No 82
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=92.07 E-value=0.69 Score=60.15 Aligned_cols=101 Identities=18% Similarity=0.232 Sum_probs=61.8
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeec-CC--eEEEEECCCCCChHhHhHhhh-ccccccchhccccccccCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDSTDENSIVK-WGKMGASLHRASKAQGIGGK 234 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d-~~--~I~I~DNG~GMS~deL~~a~k-wG~~g~S~kR~~~a~~~ggk 234 (1566)
.+..++..|++||+++. ....|.|.+... ++ .|.|.|||.||+++++..+.. |-.. ++
T Consensus 398 ~l~qvl~NLl~NAik~~----~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~-------~~------- 459 (779)
T PRK11091 398 RLRQILWNLISNAVKFT----QQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQV-------KD------- 459 (779)
T ss_pred HHHHHHHHHHHHHHHhC----CCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcc-------cC-------
Confidence 47889999999999995 334567776654 33 588999999999999865311 1100 00
Q ss_pred CCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEeh
Q 000400 235 PPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1566)
Q Consensus 235 ~~~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~LD~ 279 (1566)
.......+--|+|+.. -.-.+|.++.|.|... ....+.+.+..
T Consensus 460 -~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g-~Gt~f~i~lP~ 505 (779)
T PRK11091 460 -SHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEG-KGSCFTLTIHA 505 (779)
T ss_pred -CCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCC-CeEEEEEEEec
Confidence 0001112233666643 1223788999998863 34455555543
No 83
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=92.06 E-value=0.73 Score=61.83 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=61.8
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+..+|..||+||+.+. ....|.|.+..+++ .|.|.|||.||+++++..+..-.. +....
T Consensus 562 ~L~qvl~NLl~NAik~t----~~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~------------~~~~~-- 623 (924)
T PRK10841 562 RLQQVISNLLSNAIKFT----DTGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFF------------QVGTG-- 623 (924)
T ss_pred HHHHHHHHHHHHHHhhC----CCCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccc------------cCCCC--
Confidence 47789999999999995 33456777666544 478999999999999876321100 00000
Q ss_pred CCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 237 YLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 237 ~~r~~IGrFGvGlK~A---sfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
.....+-.|+|+..+ +-.+|.+++|.|... ....+++.+.
T Consensus 624 -~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g-~Gt~F~i~LP 666 (924)
T PRK10841 624 -VQRNFQGTGLGLAICEKLINMMDGDISVDSEPG-MGSQFTIRIP 666 (924)
T ss_pred -CCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCC-CcEEEEEEEE
Confidence 001112247777642 234788999999763 3344555554
No 84
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=91.89 E-value=1.2 Score=47.68 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=39.6
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCCe--EEEEECCCCCChHhHh
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAEDK--ISVFDTGPGMDSTDEN 210 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~~--I~I~DNG~GMS~deL~ 210 (1566)
.+..|+.|++-||+.+.........|.|.+....+. |.|.|+|.|+++..+.
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~ 95 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFK 95 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhc
Confidence 588999999999999954332335677777665544 6699999999988764
No 85
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=91.79 E-value=0.54 Score=59.07 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=55.3
Q ss_pred HHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCC
Q 000400 160 FETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~~ 237 (1566)
+..++.|++.||+.+. .+..|.|.+...++ .|.|.|||.||+++.-.
T Consensus 470 l~~il~ell~NA~kha----~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~~~~--------------------------- 518 (569)
T PRK10600 470 LLQIAREALSNALKHA----QASEVVVTVAQNQNQVKLSVQDNGCGVPENAER--------------------------- 518 (569)
T ss_pred HHHHHHHHHHHHHHhC----CCCeEEEEEEEcCCEEEEEEEECCCCCCccccC---------------------------
Confidence 6688999999999983 56678888766544 48899999999875310
Q ss_pred CCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 238 LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 238 ~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
..++|.+. ++.-+-.+|.++.+.|...+ ...+++.+.
T Consensus 519 -~~glGL~i--~~~~~~~lgG~l~i~s~~~~-Gt~v~i~lp 555 (569)
T PRK10600 519 -SNHYGLII--MRDRAQSLRGDCRVRRRESG-GTEVVVTFI 555 (569)
T ss_pred -CCCccHHH--HHHHHHHcCCEEEEEECCCC-CEEEEEEEe
Confidence 01122222 23344569999999998644 334445444
No 86
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=91.64 E-value=0.17 Score=65.80 Aligned_cols=93 Identities=25% Similarity=0.316 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHhhcchhhcccCCCCceEEEE-Eee--c--CCeEEE-----EECCCCCChHhHhHhhhccccccchhccc
Q 000400 157 DYTFETALADLIDNSLQAVWTNAKNERRLIS-VNI--A--EDKISV-----FDTGPGMDSTDENSIVKWGKMGASLHRAS 226 (1566)
Q Consensus 157 ~Ysl~sALAELVDNSIDA~~~Na~AtrI~I~-I~~--d--~~~I~I-----~DNG~GMS~deL~~a~kwG~~g~S~kR~~ 226 (1566)
.-....|+|||+|||+|-.-. +++-+.|. |.. + -...+| .|||.||.++-+..-| .++++.+.
T Consensus 144 hk~a~~a~aeLldnalDEi~~--~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m---~l~~~~k~-- 216 (775)
T KOG1845|consen 144 HKWAKGAIAELLDNALDEITN--GATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCM---SLGYSSKK-- 216 (775)
T ss_pred cccccChhhhhcccccccccc--ccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHH---Hhhhhhhh--
Confidence 456788999999999999532 23322221 111 1 122334 4889999999886422 22333221
Q ss_pred cccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEee
Q 000400 227 KAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKT 266 (1566)
Q Consensus 227 ~a~~~ggk~~~~r~~IGrFGvGlK~AsfsLG~~ltV~TK~ 266 (1566)
.....+|+||.|+|+..+.+|..+.+.++.
T Consensus 217 ----------e~~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 217 ----------EANSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred ----------hhhhhhhhhccccccchhhhccceeEeehh
Confidence 225689999999999999999999999985
No 87
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=91.57 E-value=1.1 Score=60.29 Aligned_cols=30 Identities=17% Similarity=0.042 Sum_probs=18.8
Q ss_pred CCceeeeccccccccchHHHHHHHHhcccccceEEE
Q 000400 1305 EDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVC 1340 (1566)
Q Consensus 1305 ~gV~G~VA~Lg~V~d~~~s~als~~lG~~~m~~VV~ 1340 (1566)
.++.|+|+.+..|+. .+ ..++|. .+..|++
T Consensus 502 ~~~~~~v~~~i~v~~-~~----~~~~g~-~~~li~~ 531 (1179)
T TIGR02168 502 EGFSEGVKALLKNQS-GL----SGILGV-LSELISV 531 (1179)
T ss_pred ccchhHHHHHHhccc-cc----CCCccc-hhceeee
Confidence 478888999999853 43 235564 3444544
No 88
>PRK13560 hypothetical protein; Provisional
Probab=91.51 E-value=0.45 Score=60.82 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=34.2
Q ss_pred HHHHHHHHhhcchhhcccCCCCceEEEEEeec-CC--eEEEEECCCCCChH
Q 000400 160 FETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDST 207 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~AtrI~I~I~~d-~~--~I~I~DNG~GMS~d 207 (1566)
....|.+|+.||+.+........+|.|.+... ++ .|+|.|||.||+++
T Consensus 712 ~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 712 CGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 34478899999999853332334667766554 33 48899999999976
No 89
>PRK10547 chemotaxis protein CheA; Provisional
Probab=90.95 E-value=1.3 Score=57.63 Aligned_cols=114 Identities=18% Similarity=0.102 Sum_probs=60.4
Q ss_pred HHHHHhhcchhhcccCC---------CCceEEEEEeecCC--eEEEEECCCCCChHhHhH-hhhcccccc---chhcc-c
Q 000400 163 ALADLIDNSLQAVWTNA---------KNERRLISVNIAED--KISVFDTGPGMDSTDENS-IVKWGKMGA---SLHRA-S 226 (1566)
Q Consensus 163 ALAELVDNSIDA~~~Na---------~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~-a~kwG~~g~---S~kR~-~ 226 (1566)
.|..||.||+|+....+ ....|.|+....++ .|.|.|||.||+++.+.. +..-|.... |.... .
T Consensus 389 pL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~ 468 (670)
T PRK10547 389 PLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGM 468 (670)
T ss_pred HHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHH
Confidence 35689999999954321 12346777666544 478999999999998743 111222110 00000 0
Q ss_pred cccccCCCCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEE
Q 000400 227 KAQGIGGKPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHL 277 (1566)
Q Consensus 227 ~a~~~ggk~~~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~L 277 (1566)
.-+..|-+........+-.|+|+.. ..-.+|.+++|.|.. |....+++.+
T Consensus 469 lIF~pgfst~~~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~-g~Gt~f~i~L 521 (670)
T PRK10547 469 LIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQ-GKGTTIRILL 521 (670)
T ss_pred HhhcCCcccccccccCCCCchhHHHHHHHHHHcCCEEEEEecC-CCcEEEEEEE
Confidence 0011111111111223445888853 344588999999976 3333444433
No 90
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=90.54 E-value=1.2 Score=60.61 Aligned_cols=99 Identities=16% Similarity=0.253 Sum_probs=59.3
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEee---cC--C--eEEEEECCCCCChHhHhHhhhccccccchhcccccccc
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNI---AE--D--KISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGI 231 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~---d~--~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ 231 (1566)
.+..++..|++||+++.. ...+.|.+.. +. . .|.|.|||.||+++++..+..-.. +
T Consensus 828 ~l~qvl~NLl~NAik~~~----~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~------~------- 890 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTT----EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYS------Q------- 890 (1197)
T ss_pred HHHHHHHHHHHHHHHhCC----CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccc------c-------
Confidence 578899999999999952 2234444432 22 2 378999999999999875311000 0
Q ss_pred CCCCCCCCCCccccccchhhh---hhcccCEEEEEEeeCCCceEEEEEEeh
Q 000400 232 GGKPPYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEVYTLHLEK 279 (1566)
Q Consensus 232 ggk~~~~r~~IGrFGvGlK~A---sfsLG~~ltV~TK~~gs~~v~el~LD~ 279 (1566)
+ + ... .-+-.|+|+..+ +-.+|-++++.|... ....+++.+..
T Consensus 891 ~-~--~~~-~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~-~Gt~f~i~lP~ 936 (1197)
T PRK09959 891 T-S--AGR-QQTGSGLGLMICKELIKNMQGDLSLESHPG-IGTTFTITIPV 936 (1197)
T ss_pred c-c--cCC-CCCCcCchHHHHHHHHHHcCCEEEEEeCCC-CcEEEEEEEEc
Confidence 0 0 001 112358887542 334888999999764 23455555543
No 91
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=89.41 E-value=1.9 Score=56.65 Aligned_cols=50 Identities=24% Similarity=0.448 Sum_probs=39.3
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChHhHhH
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDSTDENS 211 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~deL~~ 211 (1566)
=++.+|.-|+|||+-.. +...+|.|....+.. .+.|+|||.|++.++++.
T Consensus 775 LieQVLiNLleNA~Kya---p~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~ 826 (890)
T COG2205 775 LIEQVLINLLENALKYA---PPGSEIRINAGVERENVVFSVIDEGPGIPEGELER 826 (890)
T ss_pred HHHHHHHHHHHHHHhhC---CCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHH
Confidence 37899999999999984 234556666665544 477999999999999976
No 92
>PRK13557 histidine kinase; Provisional
Probab=89.00 E-value=2.2 Score=51.89 Aligned_cols=96 Identities=20% Similarity=0.081 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcchhhcccCCCCceEEEEEee---------------cCC--eEEEEECCCCCChHhHhHhhhccccccch
Q 000400 160 FETALADLIDNSLQAVWTNAKNERRLISVNI---------------AED--KISVFDTGPGMDSTDENSIVKWGKMGASL 222 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~AtrI~I~I~~---------------d~~--~I~I~DNG~GMS~deL~~a~kwG~~g~S~ 222 (1566)
+..++..|+.||++|.. ....|.|.... .+. .|.|.|||.||+++.+.. +.....+.
T Consensus 278 l~~vl~nll~NA~~~~~---~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~---if~~~~~~ 351 (540)
T PRK13557 278 AEVALLNVLINARDAMP---EGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILAR---VMDPFFTT 351 (540)
T ss_pred HHHHHHHHHHHHHHhcc---cCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHh---ccCCCccc
Confidence 67889999999999952 22345554432 112 488999999999998864 21111110
Q ss_pred hccccccccCCCCCCCCCCccccccchhh---hhhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 223 HRASKAQGIGGKPPYLTPFFGMFGYGGPI---ASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 223 kR~~~a~~~ggk~~~~r~~IGrFGvGlK~---AsfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
....+-.|+|+.. ..-.+|.++.+.|... ....+++.+.
T Consensus 352 ----------------~~~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~-~G~~f~i~lP 393 (540)
T PRK13557 352 ----------------KEEGKGTGLGLSMVYGFAKQSGGAVRIYSEVG-EGTTVRLYFP 393 (540)
T ss_pred ----------------CCCCCCCCccHHHHHHHHHHCCCEEEEEecCC-CceEEEEEee
Confidence 0011233777643 2334889999998763 3345555554
No 93
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=86.60 E-value=3.6 Score=54.12 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=71.8
Q ss_pred HHHHHHHhhcchhhcccCC---------CCceEEEEEeecCCe--EEEEECCCCCChHhHhH-hhhccccccchh-cccc
Q 000400 161 ETALADLIDNSLQAVWTNA---------KNERRLISVNIAEDK--ISVFDTGPGMDSTDENS-IVKWGKMGASLH-RASK 227 (1566)
Q Consensus 161 ~sALAELVDNSIDA~~~Na---------~AtrI~I~I~~d~~~--I~I~DNG~GMS~deL~~-a~kwG~~g~S~k-R~~~ 227 (1566)
..-|.=||-||+|....-+ ..-+|.++-.-.++. |.|.|||.||+++-+.. ++.=|.+..... +..+
T Consensus 434 ~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd 513 (716)
T COG0643 434 GDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSD 513 (716)
T ss_pred cccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCH
Confidence 3445558999999965431 123466655555554 67999999999999954 333343332211 1111
Q ss_pred ------ccccCCCCCCCCCCccccccch---hhhhhcccCEEEEEEeeC-CCceEEEEEEeh
Q 000400 228 ------AQGIGGKPPYLTPFFGMFGYGG---PIASMHLGRRALVSSKTK-VSKEVYTLHLEK 279 (1566)
Q Consensus 228 ------a~~~ggk~~~~r~~IGrFGvGl---K~AsfsLG~~ltV~TK~~-gs~~v~el~LD~ 279 (1566)
-+..|-++...-..++=-|||| |...-.||-++.|.|+.. |......+.+..
T Consensus 514 ~Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPLTL 575 (716)
T COG0643 514 EEILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPLTL 575 (716)
T ss_pred HHHHHHHhcCCCCcchhhhcccCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecCcHH
Confidence 1233444444555666669998 456777999999999973 333333444443
No 94
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=85.94 E-value=2.8 Score=51.99 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=37.7
Q ss_pred CHHHHHHHHhhcchhhcccCCCC-ceEEEEEeecCCe--EEEEECCCCCChHhHhH
Q 000400 159 TFETALADLIDNSLQAVWTNAKN-ERRLISVNIAEDK--ISVFDTGPGMDSTDENS 211 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~A-trI~I~I~~d~~~--I~I~DNG~GMS~deL~~ 211 (1566)
.|.-.|-=|||||+-|....... -.|.|......+. +.|.|||.||+...+..
T Consensus 350 ~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 350 DPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred CchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 57788889999999997554222 2445544444443 67999999999998754
No 95
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=85.43 E-value=2.2 Score=51.86 Aligned_cols=105 Identities=20% Similarity=0.237 Sum_probs=66.7
Q ss_pred CHHHHHHHHhhcchhhcccCCC-----CceEEEEEeec--CCeEEEEECCCCCChHhHhHhhhccccccchhcccccccc
Q 000400 159 TFETALADLIDNSLQAVWTNAK-----NERRLISVNIA--EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGI 231 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~-----AtrI~I~I~~d--~~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ 231 (1566)
.+..++-||.+||..|+..... -.-|.|.|... .-.|.|.|-|.|++.++++.+.+|+. |.++... .
T Consensus 260 hL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~y---STa~~~~---~ 333 (414)
T KOG0787|consen 260 HLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMY---STAPAPS---S 333 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhc---ccCCCCC---C
Confidence 5889999999999999865321 22355655543 45688999999999999987655543 4332211 0
Q ss_pred CCCCCCCCCCccccccchhhh---hhcccCEEEEEEeeCCCceE
Q 000400 232 GGKPPYLTPFFGMFGYGGPIA---SMHLGRRALVSSKTKVSKEV 272 (1566)
Q Consensus 232 ggk~~~~r~~IGrFGvGlK~A---sfsLG~~ltV~TK~~gs~~v 272 (1566)
. +.....+-=||+|+..+ +-++|-.+.+.|-..-..++
T Consensus 334 d---~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~ 374 (414)
T KOG0787|consen 334 D---NNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDV 374 (414)
T ss_pred C---CCCcCcccccccCCcHHHHHHHHhCCCeeEEeeeccccce
Confidence 0 11123455678888753 33477778888876433333
No 96
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=85.14 E-value=7.6 Score=41.68 Aligned_cols=52 Identities=19% Similarity=0.441 Sum_probs=38.2
Q ss_pred CCHHHHHHHHhhcchhhcccCCCC-ceEEEEEeec--CCeEEEEECCCCCChHhH
Q 000400 158 YTFETALADLIDNSLQAVWTNAKN-ERRLISVNIA--EDKISVFDTGPGMDSTDE 209 (1566)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~A-trI~I~I~~d--~~~I~I~DNG~GMS~deL 209 (1566)
+.+..|+.|++.|++.+.-++... ..|.|.+... +-.|+|+|-|.|+..-+.
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~~~~~ 93 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIEDLEE 93 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCeEEEEEEeCCCCCCCHHH
Confidence 478999999999999996553222 5677776664 445889999977665543
No 97
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.50 E-value=1.5 Score=61.44 Aligned_cols=135 Identities=15% Similarity=0.090 Sum_probs=87.4
Q ss_pred cHHHHHHHHHhhccccceeeeeecccccCCCCCCCCCCCceeeeccccc-cccchHHHHHHHHhcccccceEEEccHHHH
Q 000400 1268 TKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGT-VCTNKLSRTLAEYLGEHQMLALVCRSFEAA 1346 (1566)
Q Consensus 1268 ~~e~~~~~i~~~e~~aa~i~~~l~~~~~~~~~~s~~~~gV~G~VA~Lg~-V~d~~~s~als~~lG~~~m~~VV~~t~e~a 1346 (1566)
.++.+.++|++.-+...+..-.|+... ..++||+ |+.|.. |+ .+++.++++++|+ .+..||+++.+.|
T Consensus 653 ~~~~L~~~i~~l~~~~~g~~~~l~~~~-------~~~~Gvl--vsel~~~v~-~~~~~~~~A~lg~-~~~~iVv~d~~~A 721 (1486)
T PRK04863 653 RKQALDEEIERLSQPGGSEDPRLNALA-------ERFGGVL--LSEIYDDVS-LEDAPYFSALYGP-ARHAIVVPDLSDA 721 (1486)
T ss_pred HHHHHHHHHHhhhccCCCccHHHHHHH-------HhcCCee--hhHhhhccC-cchHHHHHHHHHh-hhCeEEeCCHHHH
Confidence 456677777776666666655555430 1379999 999999 85 7999999999998 5999999999999
Q ss_pred HHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEeeeec
Q 000400 1347 FALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNM 1426 (1566)
Q Consensus 1347 k~ie~ylke~~i~~~~~~~~~~~s~~~~~~GR~tfLpL~~Irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNL 1426 (1566)
+..+.+| .+ |.+.| | ++..||+.- ....... ..++-+-+|++
T Consensus 722 ~~ai~~L----------------------~~-----~p~d~--~---li~~~~~~~---~~~~~~~---~~~~~~v~~~~ 763 (1486)
T PRK04863 722 AEQLAGL----------------------ED-----CPEDL--Y---LIEGDPDSF---DDSVFSV---EELEKAVVVKI 763 (1486)
T ss_pred HHHHHhc----------------------cC-----Cccce--e---eecCChhHH---hccCccH---HHhcCCeeeee
Confidence 9998888 34 55555 2 234666652 2222221 34666777777
Q ss_pred cccccccccccc--ccCCCcchhHHHh
Q 000400 1427 VNLDDHHMHIRT--SAGNGLRETLLYR 1451 (1566)
Q Consensus 1427 I~~d~~~~~~~t--~~g~gLretlf~~ 1451 (1566)
.+-+-+|-.+.+ .||---||.....
T Consensus 764 ~~~~~r~s~~p~~p~~gr~are~~~~~ 790 (1486)
T PRK04863 764 ADRQWRYSRFPEVPLFGRAAREKRIEQ 790 (1486)
T ss_pred cchhhhhccCCCcccccHHHHHHHHHH
Confidence 766655543222 2333344444443
No 98
>PRK13559 hypothetical protein; Provisional
Probab=83.40 E-value=2.2 Score=49.87 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcchhhcccCCCCceEEEEEe--ecCC--eEEEEECCCCCChH
Q 000400 160 FETALADLIDNSLQAVWTNAKNERRLISVN--IAED--KISVFDTGPGMDST 207 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~AtrI~I~I~--~d~~--~I~I~DNG~GMS~d 207 (1566)
+..++-||+.||+.+........+|.|.+. .++. .|.|.|||.||+++
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC
Confidence 567899999999998432234457777773 3333 57789999998754
No 99
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=83.14 E-value=0.78 Score=59.92 Aligned_cols=56 Identities=20% Similarity=0.346 Sum_probs=45.8
Q ss_pred EEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCCCCCCccccccchhhhhhcccCEEEEEEeeCCCc
Q 000400 195 ISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSK 270 (1566)
Q Consensus 195 I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~~~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~ 270 (1566)
++..|||.||+++++..+..|+. ....+|.||-|+|..+|.+|+.+.+.|+..+..
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~f~~--------------------~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~ 57 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAINFAV--------------------GLYGIGDYGNGLKSGSMRIGKDFILFTKKESTM 57 (775)
T ss_pred cccccCCCCcCchhhhhhhhhcc--------------------cccccccccCcccccccccCcccceeecccccc
Confidence 56889999999999976544421 244789999999999999999999999986543
No 100
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=82.17 E-value=2 Score=48.77 Aligned_cols=49 Identities=18% Similarity=0.328 Sum_probs=38.7
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC----eEEEEECCCCCChH
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED----KISVFDTGPGMDST 207 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~----~I~I~DNG~GMS~d 207 (1566)
++--++-||+-||+-......+..+|.|.+....+ .++|+|||.|++.+
T Consensus 122 ~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 122 PLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 56678999999999986554456678888877533 68899999999865
No 101
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=77.80 E-value=6.5 Score=47.33 Aligned_cols=91 Identities=20% Similarity=0.202 Sum_probs=63.2
Q ss_pred HHHHHHHHhhcchhhcccCCCCceEEEEEeecC--CeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCCC
Q 000400 160 FETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPPY 237 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~--~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~~ 237 (1566)
..+|+--.++.|+...-+.++|++|.|.+.-.. -.++|.|||.|.+..++..
T Consensus 356 ~~talyRv~QEaltNIErHa~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~~-------------------------- 409 (459)
T COG4564 356 VATALYRVVQEALTNIERHAGATRVTILLQQMGDMVQLMVRDNGVGFSVKEALQ-------------------------- 409 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCcceEEEEecCCCCccchhhcc--------------------------
Confidence 567888888888887777789999999887644 4578999999999988743
Q ss_pred CCCCccccccchhhhhhcccCEEEEEEeeCCCceEEEEEEe
Q 000400 238 LTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 238 ~r~~IGrFGvGlK~AsfsLG~~ltV~TK~~gs~~v~el~LD 278 (1566)
.+.++|--.|-. -.-++|..++|.|...|-+-...+.++
T Consensus 410 ~~~GiGLRNMrE--Rma~~GG~~~v~s~p~GTel~v~Lp~~ 448 (459)
T COG4564 410 KRHGIGLRNMRE--RMAHFGGELEVESSPQGTELTVLLPLD 448 (459)
T ss_pred CccccccccHHH--HHHHhCceEEEEecCCCcEEEEEecch
Confidence 011233332221 233588999999999875544444443
No 102
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=77.56 E-value=5.1 Score=50.70 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=55.2
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeec--CCeEEEEECCCCCChHhHhHhhhccccccchhccccccccCCCCC
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIA--EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRASKAQGIGGKPP 236 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d--~~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~~~a~~~ggk~~ 236 (1566)
.+-.-+.|-+-|++-. +.|++|.|.+... .-.++|.|||+|++..+-
T Consensus 481 HlLqIvREAlsNa~KH----a~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~~e--------------------------- 529 (574)
T COG3850 481 HLLQIVREALSNAIKH----AQASEIKVTVSQNDGQVTLTVEDNGVGIDEAAE--------------------------- 529 (574)
T ss_pred HHHHHHHHHHHHHHHh----cccCeEEEEEEecCCeEEEEEeeCCcCCCCccC---------------------------
Confidence 4556788888888887 5889988888765 345889999999997732
Q ss_pred CCCCCccccccc-hhhhhhcccCEEEEEEeeCCCceE
Q 000400 237 YLTPFFGMFGYG-GPIASMHLGRRALVSSKTKVSKEV 272 (1566)
Q Consensus 237 ~~r~~IGrFGvG-lK~AsfsLG~~ltV~TK~~gs~~v 272 (1566)
..|.||+= |---+-+++..++|..+..|...+
T Consensus 530 ----~~gHyGL~IM~ERA~~L~~~L~i~~~~~gGT~V 562 (574)
T COG3850 530 ----PSGHYGLNIMRERAQRLGGQLRIRRREGGGTEV 562 (574)
T ss_pred ----CCCCcchHHHHHHHHHhcCeEEEeecCCCCeEE
Confidence 22345541 111234788889999988765543
No 103
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=74.33 E-value=4.1 Score=50.62 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcchhhcccCCCCceEEEEEeec-CC--eEEEEECCCCCChH
Q 000400 160 FETALADLIDNSLQAVWTNAKNERRLISVNIA-ED--KISVFDTGPGMDST 207 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~AtrI~I~I~~d-~~--~I~I~DNG~GMS~d 207 (1566)
+...+.+++.||+.+. .+..|.|.+... .+ .|.|.|||.||+++
T Consensus 472 l~qv~~nll~NA~k~~----~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHA----NASEIAVSCVTNPDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcC----CCCeEEEEEEEcCCCEEEEEEEECCcCcCCC
Confidence 5678999999999973 455677777654 33 48899999999864
No 104
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=71.31 E-value=9.1 Score=46.66 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=34.7
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecCC--eEEEEECCCCCChH
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAED--KISVFDTGPGMDST 207 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~--~I~I~DNG~GMS~d 207 (1566)
+++.-.-|+..|=... |+|+.|+|.+..++. .+.|.|||.|.++.
T Consensus 410 TLyRl~QE~LNNI~KH----A~AS~V~i~l~~~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 410 TLYRLCQELLNNICKH----ADASAVTIQLWQQDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred eHHHHHHHHHHHHHhc----cccceEEEEEeeCCcEEEEEEecCCcCCCCC
Confidence 5666667777776655 589999998887655 57899999999876
No 105
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=68.76 E-value=37 Score=46.02 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=41.3
Q ss_pred CCCCceeeeccccccccchHHHHHHHHhcccccceEEEccHHHHHHHH
Q 000400 1303 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALE 1350 (1566)
Q Consensus 1303 ~~~gV~G~VA~Lg~V~d~~~s~als~~lG~~~m~~VV~~t~e~ak~ie 1350 (1566)
|-..|+|.+.-=.+|.+.++|..|+-++|-+..-+.||.+++.-..+-
T Consensus 446 FK~~vyeP~~m~l~~k~~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf~ 493 (1072)
T KOG0979|consen 446 FKDEVYEPPIMTLNVKNAEFAKYLENFVGFNDLKAFICCDSEDYLLFV 493 (1072)
T ss_pred hcccccCCceEEEecCChHHHHHHHcccCccccceeeeechHHHHHHH
Confidence 568999997766778889999999999999999999999998765553
No 106
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=63.63 E-value=13 Score=44.62 Aligned_cols=97 Identities=24% Similarity=0.280 Sum_probs=56.3
Q ss_pred CHHHHHHHHhhcchhhcccCCC--C-----ceEEEEEeec------CCeEEEEECCCCCChHhHhHhhhccccccchhcc
Q 000400 159 TFETALADLIDNSLQAVWTNAK--N-----ERRLISVNIA------EDKISVFDTGPGMDSTDENSIVKWGKMGASLHRA 225 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~--A-----trI~I~I~~d------~~~I~I~DNG~GMS~deL~~a~kwG~~g~S~kR~ 225 (1566)
.+.+|+--||.||.+|-..+++ . ++.-+.+.+. .-.|.|.|||.|++++-...+..--..+
T Consensus 241 qliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~------ 314 (363)
T COG3852 241 QLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSG------ 314 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhcccccccc------
Confidence 4679999999999999755432 1 1222333332 2357899999999988665421111111
Q ss_pred ccccccCCCCCCCCCCccccccchhhhhhcc---cCEEEEEEeeCCCceEEEEEEe
Q 000400 226 SKAQGIGGKPPYLTPFFGMFGYGGPIASMHL---GRRALVSSKTKVSKEVYTLHLE 278 (1566)
Q Consensus 226 ~~a~~~ggk~~~~r~~IGrFGvGlK~AsfsL---G~~ltV~TK~~gs~~v~el~LD 278 (1566)
.-|=-|.|+.+|.=-+ |-.++..|... ..++++.+-
T Consensus 315 ---------------r~~GsGLGLala~~li~qH~G~Ie~~S~Pg--~T~FrvllP 353 (363)
T COG3852 315 ---------------REGGTGLGLALAQNLIDQHGGKIEFDSWPG--RTVFRVLLP 353 (363)
T ss_pred ---------------CCCCccccHHHHHHHHHhcCCEEEEeccCC--ceEEEEEee
Confidence 1111288887765443 34567766663 345555444
No 107
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=55.55 E-value=19 Score=39.50 Aligned_cols=106 Identities=11% Similarity=-0.011 Sum_probs=67.8
Q ss_pred ccccCceEEEEEEEECCeeeeccceEEEecccccccccceeeeeeeeeeecC-cCCCCCCceEEEeeccccCCCCCceee
Q 000400 595 VISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEG-LQGDAGGEARIICRPLAVPDEKGCVLA 673 (1566)
Q Consensus 595 g~~~~~~~v~k~I~~~gk~~~~Gq~Vkl~k~~~pG~~~~~~ygtie~Fl~~~-~~g~~gGe~~i~~rP~~l~~~~~~~l~ 673 (1566)
|.++...+.|++++.+|.+|+.||-|-+.-+..+ .+-|.|..|..+. =+|...-.|+--+||.++..... .
T Consensus 11 ~~~~~~~~~Y~s~~~~g~~y~lGD~Vlv~s~~~~-----~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~~~~~~---~ 82 (159)
T cd04715 11 GGKKKDGQFYRSFTYDGVEYRLYDDVYVHNGDSE-----PYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMELK---G 82 (159)
T ss_pred ccccCCceEEEEEEECCEEEeCCCEEEEeCCCCC-----CEEEEEEEEEEcCCcCCceEEEEEeeeCHHHhccccc---c
Confidence 4445566899999999999999999999843223 5669999988542 12445566777788888743211 0
Q ss_pred ccCC-CCccccc------ccceeccceecCCccccCChhhHHH
Q 000400 674 VNNG-NASLHIG------SSLSLPIGVIDSEKCVPVNKNVWDQ 709 (1566)
Q Consensus 674 ~~~~-~~~~~~~------~~~~lpis~id~~k~~~v~~~e~~~ 709 (1566)
.... .--+.+. ..-.-|+.-| .+||.+++-.+..+
T Consensus 83 ~~~~~~nEvFlS~~~d~~~~~~n~l~sI-~gKC~Vl~~~ey~~ 124 (159)
T cd04715 83 EPKRHINEVFLACGRGEGLANINLLESI-IGKCNVVCISEDFR 124 (159)
T ss_pred CcccCCCcEEEecCcCccccccCcHHHc-cceeEEEEehHhhh
Confidence 0000 0011111 1234678888 88999888777663
No 108
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=54.19 E-value=18 Score=48.05 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=51.5
Q ss_pred ccccccCCCHHHHhhCCCCCCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCCeEEEEECCCCCChHhHh
Q 000400 139 ENMWDLTPDTDLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKISVFDTGPGMDSTDEN 210 (1566)
Q Consensus 139 ~n~idL~Pd~~lL~sLg~~Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~~I~I~DNG~GMS~deL~ 210 (1566)
+.+|-.+|..+-+..-.----+....-|+++||.| ....++-..|.+.|+-+.+.|.|.+||.|+.-+...
T Consensus 33 ~~~wv~~~e~~k~~~~t~~pGl~ki~dEilvNaad-k~rd~~m~~i~v~i~~e~~~isv~nnGkGIPv~~H~ 103 (842)
T KOG0355|consen 33 QLMWVYDMEKRKMVQRTYVPGLYKIFDEILVNAAD-KQRDPKMNTIKVTIDKEKNEISVYNNGKGIPVTIHK 103 (842)
T ss_pred eEEeeeccccCceeEeecCCcHHHHHHHHhhcccc-cccCCCcceeEEEEccCCCEEEEEeCCCcceeeecc
Confidence 66676666666332222223578888999999999 544445566777777889999999999999877653
No 109
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=52.84 E-value=8.4 Score=33.38 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=14.6
Q ss_pred hh-hhcccceEEEEEEec
Q 000400 829 KL-FQNAGAYTFSFHLTE 845 (1566)
Q Consensus 829 ~~-f~k~G~Y~l~f~~~~ 845 (1566)
+| |.|+|.|+++|+...
T Consensus 6 nW~FT~PG~Y~l~~~a~~ 23 (41)
T TIGR03769 6 NWVFTKPGTYTLTVQATA 23 (41)
T ss_pred ceeeCCCeEEEEEEEEEE
Confidence 45 999999999998765
No 110
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=51.60 E-value=24 Score=45.66 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=37.1
Q ss_pred HHHHHHHHhhcchhhcccCC----CCceEEEEEeecCCe--EEEEECCCCCChHhHhH
Q 000400 160 FETALADLIDNSLQAVWTNA----KNERRLISVNIAEDK--ISVFDTGPGMDSTDENS 211 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na----~AtrI~I~I~~d~~~--I~I~DNG~GMS~deL~~ 211 (1566)
+-+|+--|++||.+|.-.+. ....|.++.+..++. +.|.|||.|.+.+++++
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r 658 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHR 658 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhh
Confidence 56889999999999964331 112355555554554 66999999999999876
No 111
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=47.98 E-value=48 Score=43.28 Aligned_cols=51 Identities=27% Similarity=0.264 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcchhhcccCCCCceEEEEEee--cCCeEEEEECCCCCChHhHhHh
Q 000400 160 FETALADLIDNSLQAVWTNAKNERRLISVNI--AEDKISVFDTGPGMDSTDENSI 212 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na~AtrI~I~I~~--d~~~I~I~DNG~GMS~deL~~a 212 (1566)
+.....-||.||+-.... .+..|.|..+. +...+.|.|||.|+++.-++++
T Consensus 637 l~qv~~NLi~Naik~~~~--e~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~ri 689 (750)
T COG4251 637 LGQVFQNLIANAIKFGGP--ENPDIEISAERQEDEWTFSVRDNGIGIDPAYFERI 689 (750)
T ss_pred HHHHHHHHHhhheecCCC--CCCceEEeeeccCCceEEEecCCCCCcCHHHHHHH
Confidence 456677888999887421 24667777665 4567999999999999988763
No 112
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=46.02 E-value=56 Score=35.20 Aligned_cols=97 Identities=14% Similarity=0.135 Sum_probs=61.2
Q ss_pred eEEEEEEEECCeeeeccceEEEecccccccccceeeeeeeeeeecCcCCCCCCceEEEeeccccCCCCCceeeccCCCCc
Q 000400 601 ARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNAS 680 (1566)
Q Consensus 601 ~~v~k~I~~~gk~~~~Gq~Vkl~k~~~pG~~~~~~ygtie~Fl~~~~~g~~gGe~~i~~rP~~l~~~~~~~l~~~~~~~~ 680 (1566)
-+-|++++.+|.+|+.||-|-+.-+ .+ ..-+.|.|..+..+. +|...-.|+--+||.++....+-.+...+..-=
T Consensus 8 ~~~y~s~~~dg~~y~vgD~Vlv~~~--~~--~~pyI~~I~~i~~~~-~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~El 82 (146)
T cd04713 8 KCHYTSFEKDGNKYRLEDCVLLVPE--DD--QKPYIAIIKDIYKQE-EGSLKLEVQWLYRPEEIEKKKGGNWKAEDPREL 82 (146)
T ss_pred eeeeeeEEECCEEEECCCEEEEeCC--CC--CCCEEEEEEEEEEcC-CCCEEEEEEeeECHHHhccccccccccCCCCeE
Confidence 3789999999999999999998822 11 225568998888432 355556667778888885432211111122333
Q ss_pred ccccccceeccceecCCccccCC
Q 000400 681 LHIGSSLSLPIGVIDSEKCVPVN 703 (1566)
Q Consensus 681 ~~~~~~~~lpis~id~~k~~~v~ 703 (1566)
|.....-..|+.-| .+||.++.
T Consensus 83 F~S~~~d~~~~~~I-~gkc~V~~ 104 (146)
T cd04713 83 FYSFHRDEVPAESV-LHPCKVAF 104 (146)
T ss_pred EEeCCCCcCCHHHC-cceeEEEE
Confidence 33444455688888 77777753
No 113
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=39.93 E-value=55 Score=31.29 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=34.5
Q ss_pred EEEEccCCceEEEEeeCCCCCccHHHHHhhhhhhhccccccc--cccccceeecccC
Q 000400 41 FKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRH--DSMKRKRKINWNG 95 (1566)
Q Consensus 41 f~~llpng~~~~l~~~~p~~e~~~~~f~~lv~~e~~~~~~~~--~~~~~~~~~~~~~ 95 (1566)
.+|.||||.++.+.++. +++++|++.-+=+-+.....++ -....+..++||-
T Consensus 3 ~~v~LP~~q~t~V~vrp---g~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRP---GMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEETTTEEEEEEE-T---TSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred EEEECCCCCEEEEEEcC---CCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence 36899999999999875 5999999988655555544344 1122567777765
No 114
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=38.46 E-value=89 Score=38.62 Aligned_cols=50 Identities=28% Similarity=0.396 Sum_probs=38.5
Q ss_pred CHHHHHHHHhhcchhhcccCCCCceEEEEEeecC--CeEEEEECCCCCChHhHhH
Q 000400 159 TFETALADLIDNSLQAVWTNAKNERRLISVNIAE--DKISVFDTGPGMDSTDENS 211 (1566)
Q Consensus 159 sl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~--~~I~I~DNG~GMS~deL~~ 211 (1566)
.+.+.|--+|-||+-.. ++..+|+|.+.... -.|+|.|.|.|++.+++..
T Consensus 342 K~tQVldNii~NA~KYs---P~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~ 393 (459)
T COG5002 342 KMTQVLDNIISNALKYS---PDGGRITVSVKQRETWVEISISDQGLGIPKEDLEK 393 (459)
T ss_pred HHHHHHHHHHHHHhhcC---CCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHHH
Confidence 46788888888988883 34567777776533 4588999999999999976
No 115
>PF14501 HATPase_c_5: GHKL domain
Probab=36.58 E-value=50 Score=32.47 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=29.6
Q ss_pred CCHHHHHHHHhhcchhhcccCCCCceEEEEEeecCCeEE-EEECC
Q 000400 158 YTFETALADLIDNSLQAVWTNAKNERRLISVNIAEDKIS-VFDTG 201 (1566)
Q Consensus 158 Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d~~~I~-I~DNG 201 (1566)
.++...++-|+|||++|.....+.+.|.|.+...++.+. ..-|-
T Consensus 4 ~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~~~i~i~N~ 48 (100)
T PF14501_consen 4 LDLCRILGNLLDNAIEACKKYEDKRFISISIREENGFLVIIIENS 48 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEEC
Confidence 457788999999999997555435567777666555433 34444
No 116
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=36.39 E-value=54 Score=41.46 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=44.5
Q ss_pred HHHhhCCCCCCHHHHHHHHhhcchhhcccCCCCceEEEEEeec---CCeEEEEECCCCCChHhHhH
Q 000400 149 DLLRELPEDYTFETALADLIDNSLQAVWTNAKNERRLISVNIA---EDKISVFDTGPGMDSTDENS 211 (1566)
Q Consensus 149 ~lL~sLg~~Ysl~sALAELVDNSIDA~~~Na~AtrI~I~I~~d---~~~I~I~DNG~GMS~deL~~ 211 (1566)
+.+.-+|...+++..+.-|+-||+||... .+..|.|.+.-+ .-+|.|.|||.|-..+-+..
T Consensus 554 D~~~V~gd~v~ieQVlvNl~~NaldA~~h--~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dk 617 (673)
T COG4192 554 DDLMVMGDAVSIEQVLVNLIVNALDASTH--FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDK 617 (673)
T ss_pred ccceecchhhhHHHHHHHHHHHHHhhhcc--CCceEEEEeecCcccceEEEEecCCCCCchhHHHH
Confidence 45556677789999999999999999533 234444544432 34688999999999776654
No 117
>smart00455 RBD Raf-like Ras-binding domain.
Probab=28.14 E-value=93 Score=29.76 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=36.2
Q ss_pred EEEEccCCceEEEEeeCCCCCccHHHHHhhhhhhhccccccc-ccc-ccceeecccC
Q 000400 41 FKILFPNGATIDLLLIDPKHKMAVTDFICLVKDEYFKSWMRH-DSM-KRKRKINWNG 95 (1566)
Q Consensus 41 f~~llpng~~~~l~~~~p~~e~~~~~f~~lv~~e~~~~~~~~-~~~-~~~~~~~~~~ 95 (1566)
|+|+||||+.+.+++. +++++.|.+.-+=+-++...-.+ ... ..++-++|+.
T Consensus 2 ~~v~LP~~~~~~V~vr---pg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~~ 55 (70)
T smart00455 2 CKVHLPDNQRTVVKVR---PGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQ 55 (70)
T ss_pred eEEECCCCCEEEEEEC---CCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecCC
Confidence 6899999999999986 45999999887655555533223 222 2456777865
No 118
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=27.98 E-value=64 Score=41.06 Aligned_cols=48 Identities=23% Similarity=0.247 Sum_probs=35.8
Q ss_pred HHHHHHHHhhcchhhcccCC-CCceEEEEEeecC--CeEEEEECCCCCChH
Q 000400 160 FETALADLIDNSLQAVWTNA-KNERRLISVNIAE--DKISVFDTGPGMDST 207 (1566)
Q Consensus 160 l~sALAELVDNSIDA~~~Na-~AtrI~I~I~~d~--~~I~I~DNG~GMS~d 207 (1566)
|..-|-=||.||+-....+. +.-+|.|.+...+ -.|.|.|||.|+.++
T Consensus 457 P~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 457 PSFILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred chhhhhHHHHHHHHhcccchhcCCceEEEEEEeCCeEEEEEecCCCCcCCC
Confidence 45567789999999876652 3345777776643 458899999999996
No 119
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=26.95 E-value=3.6e+02 Score=26.95 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=36.6
Q ss_pred CCceeeeccccccccchHHHHHHHHhcccccceEEEccHHHHHHH
Q 000400 1305 EDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFAL 1349 (1566)
Q Consensus 1305 ~gV~G~VA~Lg~V~d~~~s~als~~lG~~~m~~VV~~t~e~ak~i 1349 (1566)
++-.+....+.+++|+++..++...+|+ .+||+|.+.|++|
T Consensus 79 ~~~~~~l~d~i~~~d~~~~~~~~~llg~----~~vv~~l~~A~~l 119 (120)
T PF06470_consen 79 PGGAGPLIDLIEFPDEEYRPALEFLLGD----VVVVDDLEEARKL 119 (120)
T ss_dssp TTSEEEGGGGEEESCGGGHHHHHHHHTT----EEEESSHHHHHHH
T ss_pred CcchHHHHHhcccCcHHHHHHHHHHcCC----EEEECCHHHHHHh
Confidence 5788888999999778999999999985 8999999999987
No 120
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=26.50 E-value=1.1e+02 Score=30.30 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=24.7
Q ss_pred EEEEccCCceEEEEeeCCCCCccHHHHHhhh
Q 000400 41 FKILFPNGATIDLLLIDPKHKMAVTDFICLV 71 (1566)
Q Consensus 41 f~~llpng~~~~l~~~~p~~e~~~~~f~~lv 71 (1566)
++|+||||+.+.+.+.. +|+..|+..+.
T Consensus 2 ~~V~lPn~~~~~v~vrp---~~tv~dvLe~a 29 (77)
T cd01818 2 SWVCLPDNQPVLTYLRP---GMSVEDFLESA 29 (77)
T ss_pred CEEECCCCceEEEEECC---CCCHHHHHHHH
Confidence 68999999999998864 59999999984
No 121
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.56 E-value=87 Score=31.72 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=35.9
Q ss_pred CCceeEEEeecCceeeecchhhHHHHhhhhcCCCCccccCCcccccEEEEEcCC
Q 000400 1048 GKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSK 1101 (1566)
Q Consensus 1048 g~~~s~sv~~~~~~~~~~~~~~~~r~l~~~~~~p~~~~~g~~l~~~~~~v~~~~ 1101 (1566)
|+.+-+=|-.||..-.+|-|+ |-++.++|+....-.+.++|+|=|-+.|
T Consensus 22 g~~vrffvRyGG~~~~~~GFS-----~gv~~e~PkE~g~~q~~Dgltffiee~D 70 (95)
T COG4841 22 GNKVRFFVRYGGCSSLQQGFS-----LGVAKEVPKEIGYKQEYDGLTFFIEEKD 70 (95)
T ss_pred CCEEEEEEEEcCcccccCCcc-----eeeeccCchhhchheeecCeEEEEecCc
Confidence 334444444444445556665 6788999999999999999999998876
No 122
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=20.86 E-value=1.6e+02 Score=29.31 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=58.1
Q ss_pred CeeeeccceEEEecccccccccceeeeeeeeeeecCcCCCCCCceEEEeeccccCCCCCceeeccCCCCcccccccceec
Q 000400 611 GAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLP 690 (1566)
Q Consensus 611 gk~~~~Gq~Vkl~k~~~pG~~~~~~ygtie~Fl~~~~~g~~gGe~~i~~rP~~l~~~~~~~l~~~~~~~~~~~~~~~~lp 690 (1566)
|.+|+.||-|-+..+..++ ...-+.|.|+.+..+. +|...-.++--+||-+++..... -...+-=|.....-.+|
T Consensus 1 g~~y~vgd~V~v~~~~~~~-~~~~~i~~I~~i~~~~-~~~~~~~v~wf~rp~e~~~~~~~---~~~~~Elf~s~~~~~i~ 75 (123)
T cd04370 1 GITYEVGDSVYVEPDDSIK-SDPPYIARIEELWEDT-NGSKQVKVRWFYRPEETPKGLSP---FALRRELFLSDHLDEIP 75 (123)
T ss_pred CCEEecCCEEEEecCCcCC-CCCCEEEEEeeeeECC-CCCEEEEEEEEEchhHhcccccc---ccccceeEEecCccccC
Confidence 5689999999888543210 0125569998888552 23344455666677666543221 01222233445566889
Q ss_pred cceecCCccccCChhhHHHHH
Q 000400 691 IGVIDSEKCVPVNKNVWDQQL 711 (1566)
Q Consensus 691 is~id~~k~~~v~~~e~~~~l 711 (1566)
+.-| .+||.+....++.+..
T Consensus 76 v~~I-~gkc~V~~~~~~~~~~ 95 (123)
T cd04370 76 VESI-IGKCKVLFVSEFEGLK 95 (123)
T ss_pred HHHh-ccccEEEechHhhccc
Confidence 9999 8889998888776543
Done!