Query 000400
Match_columns 1566
No_of_seqs 296 out of 1003
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 17:24:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000400.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_178-182//hhsearch_pdb/000400hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nwc_A SMC protein; structural 1.0 1 1 188.1 11.0 170 1270-1508 11-182 (189)
2 3l51_B Structural maintenance 1.0 1 1 169.3 10.0 139 1304-1495 16-160 (166)
3 3l51_A Structural maintenance 1.0 1 1 166.8 12.3 148 1299-1493 9-161 (161)
4 1gxj_A SMC, chromosome segrega 1.0 1 1 150.5 10.0 159 1278-1495 11-174 (186)
5 2wd5_A Structural maintenance 1.0 1 1 145.4 8.3 139 1304-1494 51-196 (233)
6 1gxl_A SMC, chromosome segrega 1.0 1 1 142.1 13.3 159 1278-1495 23-186 (213)
7 2ioq_A Chaperone protein HTPG; 1.0 1 1 130.5 7.7 134 140-278 5-157 (624)
8 1y4s_A Chaperone protein HTPG; 1.0 1 1 130.3 12.4 412 140-665 5-467 (559)
9 1yc1_A HSP 86, heat shock prot 1.0 1 1 129.7 8.7 180 138-345 44-243 (264)
10 2ior_A Chaperone protein HTPG; 1.0 1 1 126.6 8.7 179 140-345 25-225 (235)
No 1
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=188.13 Aligned_cols=170 Identities=17% Similarity=0.204 Sum_probs=136.4
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHH
Q ss_conf 99999998502554044443225666789998878871041021223266358899999833344246997158989999
Q 000400 1270 EEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFAL 1349 (1566)
Q Consensus 1270 e~~~~~i~~~e~~aa~i~~~l~~~~~~~~~~s~~~~gV~G~VA~Lg~V~d~~la~als~~lG~~~m~~VV~~t~e~ak~l 1349 (1566)
+.+..+.++ ++..+|..+++.. .+||+|.|++|++|++.+|..|+++++|+ .+++||++|.+.|+.+
T Consensus 11 ~~l~~~~~~--~~~~~v~~l~~~~----------~~gv~G~l~dLi~V~~~kye~Ave~aLG~-~l~~iVVd~~~~A~~~ 77 (189)
T 3nwc_A 11 IAAEAQREV--RGNRAAEELKRSG----------IGGIYGTLAELIKVKDEAYALAIEVALGN-RADNVVVEDELVAEKA 77 (189)
T ss_dssp HHHHHHHHH--SSCTHHHHHTTSC----------CCSEEEEHHHHCEESCGGGHHHHHHHHGG-GGGCEEESSHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHCC----------CCCCEEEHHHHEEECHHHHHHHHHHHHCC-CCCCEEECCHHHHHHH
T ss_conf 999999986--1789999999547----------89855778893156835689999998360-4460787888999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 98631188530010136563017564880589842797888999999992011359999999998898851765202223
Q 000400 1350 EKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNL 1429 (1566)
Q Consensus 1350 e~ylke~~i~~~~~~~~~~~s~~~~~~GR~tfLpL~~irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~ 1429 (1566)
++|+++.+ .||+||||||.|++. .++. ++|++ |+++|+|
T Consensus 78 i~~Lk~~~------------------~GRatflpl~~i~~~------------------~~~~---~~g~~--a~dlv~~ 116 (189)
T 3nwc_A 78 IKYLKEHK------------------LGRLTFLPLNKIKPK------------------HVDS---SVGLP--AVDVIEY 116 (189)
T ss_dssp HHHHHHTT------------------CCCCCEEETTTCCCC------------------CCCS---CSSEE--GGGGEEC
T ss_pred HHHHHHCC------------------CCCEEEEECCCCCCC------------------CCCC---CCCCE--EEEEECC
T ss_conf 99998648------------------871499989866666------------------6889---99937--7655436
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHHHCCCC-EEEECCCEEECCCEEEECCCC-CCEEECCCCCC
Q ss_conf 6433210123588730237986603611100288699998302584-598108702016517507799-83010243234
Q 000400 1430 DDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHG-AVSLDGGILKEDGIISLGCGN-PTICFPIVRTR 1507 (1566)
Q Consensus 1430 d~~~~~~~t~~g~gLretif~~vfg~t~Vy~Tre~m~~A~~~i~~~-~VTLDG~li~~~G~~tgG~~~-~~~~F~~~~~~ 1507 (1566)
|+++. .+|+++||++.|++ +++.|+...+.. +|||||++++++|.|+||+.. ++++|+...+.
T Consensus 117 d~~~~------------~a~~~llg~tlvv~---dl~~A~~l~~~~r~VTldGd~i~~~G~~tGG~~~~~~~~f~~~~~~ 181 (189)
T 3nwc_A 117 DQKIE------------NAVKFALGDTVIVN---SMEEARPHIGKVRMVTIEGELYERSGAITGGHFRARGLAVDTTKLR 181 (189)
T ss_dssp CGGGH------------HHHHHHHTTEEEES---CSGGGGGGTTTSEEEETTSCEECTTSCEECSCSSCCCSEECSSCCC
T ss_pred CHHHH------------HHHHHHHCCEEEEC---CHHHHHHHHCCCEEEECCCCEEECCEEEEECCCCCCCCEECHHHEE
T ss_conf 77788------------99998819989999---9999999867973996898199788899808989987511122203
Q ss_pred C
Q ss_conf 5
Q 000400 1508 I 1508 (1566)
Q Consensus 1508 ~ 1508 (1566)
.
T Consensus 182 ~ 182 (189)
T 3nwc_A 182 L 182 (189)
T ss_dssp C
T ss_pred E
T ss_conf 1
No 2
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=1.00 E-value=1 Score=169.26 Aligned_cols=139 Identities=15% Similarity=0.216 Sum_probs=113.3
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 88710410212232663588999998333442469971589899999863118853001013656301756488058984
Q 000400 1304 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1383 (1566)
Q Consensus 1304 ~~gV~G~VA~Lg~V~d~~la~als~~lG~~~m~~VV~~t~e~ak~le~ylke~~i~~~~~~~~~~~s~~~~~~GR~tfLp 1383 (1566)
++||+|.|++|++|+ ++|..|+++++| .|+.||++|.+.|+.+++|+++.+ .||+||||
T Consensus 16 ~~Gv~G~v~dLi~v~-~~y~~Aie~alg--~l~~iVVd~~~~A~~~i~~Lk~~~------------------~GRatflp 74 (166)
T 3l51_B 16 IPGIYGRLGDLGAID-EKYDIAISSCCH--ALDYIVVDSIDTAQECVNFLKKHN------------------IGIATFIG 74 (166)
T ss_dssp STTEEEEGGGSCBCC-GGGHHHHHHHCG--GGGSEEESCHHHHHHHHHHHHHTT------------------CCCCCEEE
T ss_pred CCCCEEEHHHHEEEC-HHHHHHHHHHHH--HCCEEEECCHHHHHHHHHHHHHCC------------------CCEEEEEE
T ss_conf 997168877803007-879999999971--284299887999999999998729------------------97079998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCCCCCHHHHHHHHCCCEEEECH
Q ss_conf 27978889999999920113599999999988988517652022236-43321012358873023798660361110028
Q 000400 1384 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLD-DHHMHIRTSAGNGLRETLLYRLFGKLQVYKTR 1462 (1566)
Q Consensus 1384 L~~irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~d-~~~~~~~t~~g~gLretif~~vfg~t~Vy~Tr 1462 (1566)
||+|++.... .+.. . .|+...+|+++|+|+ ++|. .+|+++||+++|++
T Consensus 75 L~~i~~~~~~-------------~~~~---~-~~~~~~~a~dlv~~~d~~~~------------~a~~~llg~tlVv~-- 123 (166)
T 3l51_B 75 LDKMTVWAKK-------------MSKI---Q-TPENTPRLFDLVKVKNEEIR------------QAFYFALRDTLVAN-- 123 (166)
T ss_dssp GGGTGGGTTS-------------CCCC---C-CGGGCCBHHHHCBCSCHHHH------------HHHHHHHTTCEEES--
T ss_pred CCCCCCCCCC-------------CCCC---C-CCCCHHHHHHEEECCCHHHH------------HHHHHHCCCEEEEC--
T ss_conf 8655545566-------------3302---2-66546568520407868899------------99999829989989--
Q ss_pred HHHHHHHHHCC----CC-EEEECCCEEECCCEEEECCC
Q ss_conf 86999983025----84-59810870201651750779
Q 000400 1463 KDMIEAHTCIR----HG-AVSLDGGILKEDGIISLGCG 1495 (1566)
Q Consensus 1463 e~m~~A~~~i~----~~-~VTLDG~li~~~G~~tgG~~ 1495 (1566)
+++.|+.... .. +|||||++++++|+||||+.
T Consensus 124 -dl~~A~~~~~~~~~~~r~VTldGdli~~~G~~tGG~~ 160 (166)
T 3l51_B 124 -NLDQATRVAYQRDRRWRVVTLQGQIIEQSGTMSGGLE 160 (166)
T ss_dssp -SHHHHHHHHBCSSCBCCEEETTSCEECTTCCEEECCG
T ss_pred -CHHHHHHHHHHHCCCCEEEECCCEEEECCEEEECCCC
T ss_conf -9999999888608994899789889958988978885
No 3
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=1.00 E-value=1 Score=166.81 Aligned_cols=148 Identities=21% Similarity=0.214 Sum_probs=116.2
Q ss_pred CCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 99887887104102122326635889999983334424699715898999998631188530010136563017564880
Q 000400 1299 PRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGR 1378 (1566)
Q Consensus 1299 ~~s~~~~gV~G~VA~Lg~V~d~~la~als~~lG~~~m~~VV~~t~e~ak~le~ylke~~i~~~~~~~~~~~s~~~~~~GR 1378 (1566)
..++..+||+|.|++|++|++++|..|+++++|+. |+.||++|.+.|+.+.+|+ ...||
T Consensus 9 ~~~~~~~gv~G~v~dLi~v~d~~y~~Ave~alG~~-l~~iVVd~~~~A~~~i~~~--------------------~~~GR 67 (161)
T 3l51_A 9 EKNWNRNSVKGLVASLINVKDNSTATALEVVAGER-LYNVVVDTEVTAKKLLEKG--------------------ELKRR 67 (161)
T ss_dssp STTCCGGGEEEEGGGSCEESCGGGHHHHHHHHGGG-GGCEEESCHHHHHHHHHHS--------------------CCSSC
T ss_pred CCCCCCCCCEEEHHHHEEECCHHHHHHHHHHHCCC-CCEEEECCHHHHHHHHHHH--------------------HHCCC
T ss_conf 99988575478877912518421999999983411-2349989789999999987--------------------52785
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEE
Q ss_conf 58984279788899999999201135999999999889885176520222364332101235887302379866036111
Q 000400 1379 YLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQV 1458 (1566)
Q Consensus 1379 ~tfLpL~~irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~d~~~~~~~t~~g~gLretif~~vfg~t~V 1458 (1566)
+||||||+|++.... ...+. .+ +. ...++.+++|+|+|+||+++. .+|+++||+++|
T Consensus 68 ~tflpL~~i~~~~~~----~~~~~--~~-~~----~~~~~~~~~a~dlv~~d~~~~------------~a~~~llg~tlv 124 (161)
T 3l51_A 68 YTIIPLNKISARCIA----PETLR--VA-QN----LVGPDNVHVALSLVDYKPELQ------------KGMEFVFGTTFV 124 (161)
T ss_dssp EEEEETTTCCCCCCC----HHHHH--HH-HH----HHCTTSEEEGGGGEECCGGGH------------HHHHHHHTTCEE
T ss_pred EEEEECCCCCCCCCC----HHHHH--HH-HH----CCCCCCHHHHHHHHCCCHHHH------------HHHHHHCCCEEE
T ss_conf 799987644556768----77775--54-40----478861567888850788899------------999998399899
Q ss_pred EECHHHHHHHHHHCC-----CCEEEECCCEEECCCEEEEC
Q ss_conf 002886999983025-----84598108702016517507
Q 000400 1459 YKTRKDMIEAHTCIR-----HGAVSLDGGILKEDGIISLG 1493 (1566)
Q Consensus 1459 y~Tre~m~~A~~~i~-----~~~VTLDG~li~~~G~~tgG 1493 (1566)
++ +|+.|+.... -.+|||||++++++|.|+||
T Consensus 125 ~~---dl~~A~~~~~~~~~~~r~VTldGd~i~~~G~~tGG 161 (161)
T 3l51_A 125 CN---NMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGG 161 (161)
T ss_dssp ES---SHHHHHHHHHCTTTCCCEEETTSCEECCC------
T ss_pred EC---CHHHHHHHHHHCCCCCEEEECCCEEECCCEEEECC
T ss_conf 99---99999999974599874996998598587887359
No 4
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=1.00 E-value=1 Score=150.48 Aligned_cols=159 Identities=23% Similarity=0.262 Sum_probs=123.8
Q ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCC
Q ss_conf 50255404444322566678999887887104102122326635889999983334424699715898999998631188
Q 000400 1278 SIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGT 1357 (1566)
Q Consensus 1278 ~~e~~aa~i~~~l~~~~~~~~~~s~~~~gV~G~VA~Lg~V~d~~la~als~~lG~~~m~~VV~~t~e~ak~le~ylke~~ 1357 (1566)
+.+++..++..++..+.. ++||+|.|++|.+|+ +.|..|+++++|++ +++||+++.+.++.+..|+++.+
T Consensus 11 ~~~~~~~~~~~~l~~~~~--------~~g~~g~l~~li~v~-~~~e~Ave~aLG~~-l~~ivv~~~~~a~~~i~~lk~~~ 80 (186)
T 1gxj_A 11 EYRGFSRAVRAVFEEKER--------FPGLVDVVSNLIEVD-EKYSLAVSVLLGGT-AQNIVVRNVDTAKAIVEFLKQNE 80 (186)
T ss_dssp ---CCCHHHHHHHHTGGG--------CTTEEEEHHHHCBCC-GGGHHHHHHHHGGG-GGCEEESSHHHHHHHHHHHHHHT
T ss_pred HHCCHHHHHHHHHHHHHH--------HCCCCEEHHHEECCC-HHHHHHHHHHHHHH-HHEEEECCHHHHHHHHHHHHHCC
T ss_conf 771314899999996464--------089622453322338-89999999998886-51899898999999999998569
Q ss_pred CCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 53001013656301756488058984279788899999999201135999999999889885176520222364332101
Q 000400 1358 IDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIR 1437 (1566)
Q Consensus 1358 i~~~~~~~~~~~s~~~~~~GR~tfLpL~~irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~d~~~~~~~ 1437 (1566)
.||++|+||+.+++.. . +.+.+. .++|++++|.++|.+|+++.
T Consensus 81 ------------------~gr~tflpl~~~~~~~-~------------~~~~~~---~~~g~~~~~~dlv~~~~~~~--- 123 (186)
T 1gxj_A 81 ------------------AGRVTILPLDLIDGSF-N------------RISGLE---NERGFVGYAVDLVKFPSDLE--- 123 (186)
T ss_dssp ------------------CCCEEEEETTTCCCCC-C------------CCTTGG---GSTTEEEEHHHHCBCCGGGH---
T ss_pred ------------------CCCEEEEECCCCCCCC-C------------CCHHCC---CCCCCHHHHHHHCCCCHHHH---
T ss_conf ------------------9836998733257776-6------------201102---68971578988715878999---
Q ss_pred CCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHHHC-----CCCEEEECCCEEECCCEEEECCC
Q ss_conf 23588730237986603611100288699998302-----58459810870201651750779
Q 000400 1438 TSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCI-----RHGAVSLDGGILKEDGIISLGCG 1495 (1566)
Q Consensus 1438 t~~g~gLretif~~vfg~t~Vy~Tre~m~~A~~~i-----~~~~VTLDG~li~~~G~~tgG~~ 1495 (1566)
.+|.++|+++.|.+ +++.|+... +..+||+||++++++|.|+||+.
T Consensus 124 ---------~~~~~~lg~~~v~~---~l~~A~~l~~~~~~~~~~VTldG~~~~~~G~~~gG~~ 174 (186)
T 1gxj_A 124 ---------VLGGFLFGNSVVVE---TLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGRE 174 (186)
T ss_dssp ---------HHHHHHHTTCEEES---CHHHHHHHHHHHTCCSCEEETTSCEECTTSCEEEEEC
T ss_pred ---------HHHHHHCCCEEEEC---CHHHHHHHHHHCCCCCEEEECCCEEECCCEEEECCCC
T ss_conf ---------99999849989999---9999999998449986499689809869977978988
No 5
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=1.00 E-value=1 Score=145.39 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=110.8
Q ss_pred CCC-CEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEEE
Q ss_conf 887-1041021223266358899999833344246997158989999986311885300101365630175648805898
Q 000400 1304 MED-VVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 1382 (1566)
Q Consensus 1304 ~~g-V~G~VA~Lg~V~d~~la~als~~lG~~~m~~VV~~t~e~ak~le~ylke~~i~~~~~~~~~~~s~~~~~~GR~tfL 1382 (1566)
++| |+|.|++|++|.++.|..|++++||+ .+++||+.+.+.++.+..|+++.+ .||++|+
T Consensus 51 ~~g~v~G~l~dli~v~~~~ye~Ave~aLG~-~l~~iVV~~~~~a~~~i~~Lk~~~------------------~Gr~tfl 111 (233)
T 2wd5_A 51 YPGSVYGRLIDLCQPTQKKYQIAVTKVLGK-NMDAIIVDSEKTGRDCIQYIKEQR------------------GEPETFL 111 (233)
T ss_dssp SGGGEEEEHHHHEEESSGGGHHHHHHHHGG-GGSCEEESCHHHHHHHHHHHHHTT------------------CCCEEEE
T ss_pred CCCCEEEEHHHHCEECCHHHHHHHHHHHHH-HHCEEEECCHHHHHHHHHHHHHCC------------------CCCEEEE
T ss_conf 899866667895122868999999999888-655799898999999999998659------------------9971799
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-CCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEC
Q ss_conf 42797888999999992011359999999998898851765202223-64332101235887302379866036111002
Q 000400 1383 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNL-DDHHMHIRTSAGNGLRETLLYRLFGKLQVYKT 1461 (1566)
Q Consensus 1383 pL~~irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~-d~~~~~~~t~~g~gLretif~~vfg~t~Vy~T 1461 (1566)
||+.+++.... +.++ .|+|+ ..+.++|.+ |+.+. .+|+++||++.|.+
T Consensus 112 pl~~i~~~~~~--------------~~~~---~~~g~-~~l~dlV~~~~~~~~------------~~~~~~Lg~~~vv~- 160 (233)
T 2wd5_A 112 PLDYLEVKPTD--------------EKLR---ELKGA-KLVIDVIRYEPPHIK------------KALQYACGNALVCD- 160 (233)
T ss_dssp ETTTCCCCCCC--------------GGGG---GCSSC-EESGGGEEESSGGGH------------HHHHHHTTTCEEES-
T ss_pred ECCCCCCCCCC--------------HHCC---CCCCC-HHHHHHHHCCCHHHH------------HHHHHHHCCEEEEC-
T ss_conf 77313667752--------------1105---87884-478876517868899------------99999929989999-
Q ss_pred HHHHHHHHHHC-----CCCEEEECCCEEECCCEEEECC
Q ss_conf 88699998302-----5845981087020165175077
Q 000400 1462 RKDMIEAHTCI-----RHGAVSLDGGILKEDGIISLGC 1494 (1566)
Q Consensus 1462 re~m~~A~~~i-----~~~~VTLDG~li~~~G~~tgG~ 1494 (1566)
+++.|+.+. +..+||+||+++.++|.|+||+
T Consensus 161 --dl~~A~~l~~~~~~~~r~VTldG~~~~~~G~~tGG~ 196 (233)
T 2wd5_A 161 --NVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGA 196 (233)
T ss_dssp --SHHHHHHHHHSSSSCCCEEETTCCEECTTSCEEECH
T ss_pred --CHHHHHHHHHHCCCCCEEEECCCEEEECCEEEECCC
T ss_conf --999999999846998169956987980892686899
No 6
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=1.00 E-value=1 Score=142.14 Aligned_cols=159 Identities=23% Similarity=0.269 Sum_probs=121.7
Q ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCC
Q ss_conf 50255404444322566678999887887104102122326635889999983334424699715898999998631188
Q 000400 1278 SIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGT 1357 (1566)
Q Consensus 1278 ~~e~~aa~i~~~l~~~~~~~~~~s~~~~gV~G~VA~Lg~V~d~~la~als~~lG~~~m~~VV~~t~e~ak~le~ylke~~ 1357 (1566)
+++++..++..++..... .+|++|.|++|.+| ++.|..|++.++|+ .+++||+.+.+.++.+..|+++.+
T Consensus 23 ~~~~~~~~~~~ll~~~~~--------~~g~~g~l~~li~v-~~~~e~Ave~aLg~-~l~~ivv~~~~~a~~~i~~lk~~~ 92 (213)
T 1gxl_A 23 EYRGFSRAVRAVFEEKER--------FPGLVDVVSNLIEV-DEKYSLAVSVLLGG-TAQNIVVRNVDTAKAIVEFLKQNE 92 (213)
T ss_dssp TTTTSCHHHHHHHTTTTS--------CTTEEEEGGGTCBC-CHHHHHHHHHHHGG-GGGCEEESSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH--------HCCCCEEHHHEEEE-CHHHHHHHHHHHHH-HHCEEEECCHHHHHHHHHHHHHCC
T ss_conf 870124899999996565--------08973133420540-89999999999878-656799898999999999998569
Q ss_pred CCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 53001013656301756488058984279788899999999201135999999999889885176520222364332101
Q 000400 1358 IDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIR 1437 (1566)
Q Consensus 1358 i~~~~~~~~~~~s~~~~~~GR~tfLpL~~irp~~~~~~~~dpq~~l~lp~p~lpng~~p~GfigyAvNLI~~d~~~~~~~ 1437 (1566)
.||++|+||+.+++.. . +.+.++ .++|++++|.++|.+|+.+.
T Consensus 93 ------------------~gr~~~lpl~~~~~~~-~------------~~~~~~---~~~g~~~~~~d~v~~~~~~~--- 135 (213)
T 1gxl_A 93 ------------------AGRVTILPLDLIDGSF-N------------RISGLE---NERGFVGYAVDLVKFPSDLE--- 135 (213)
T ss_dssp ------------------CEEEEEEETTTSCCCC-C------------CCTTGG---GSTTEEEEGGGGCBCCSTTH---
T ss_pred ------------------CCCEEEEECHHCCCCC-C------------CCHHHH---CCCCCHHHHHHHHCCCHHHH---
T ss_conf ------------------9825998731127887-5------------200110---47971778988804878999---
Q ss_pred CCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHHHC-----CCCEEEECCCEEECCCEEEECCC
Q ss_conf 23588730237986603611100288699998302-----58459810870201651750779
Q 000400 1438 TSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCI-----RHGAVSLDGGILKEDGIISLGCG 1495 (1566)
Q Consensus 1438 t~~g~gLretif~~vfg~t~Vy~Tre~m~~A~~~i-----~~~~VTLDG~li~~~G~~tgG~~ 1495 (1566)
.++.++|+++.|.+ +++.|+... +..+||+||+++.++|.|+||+.
T Consensus 136 ---------~~~~~~lg~~~vv~---~l~~A~~~~~~~~~~~~~VT~~G~~~~~~G~~~gg~~ 186 (213)
T 1gxl_A 136 ---------VLGGFLFGNSVVVE---TLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGRE 186 (213)
T ss_dssp ---------HHHHHHSSSEEEES---SHHHHHHHHHHTCSSCEEECTTSCEECTTSCEEECCC
T ss_pred ---------HHHHHHHCCEEEEC---CHHHHHHHHHHCCCCCEEEECCCEEECCCCEEECCCC
T ss_conf ---------99999809989998---9999999998459980599549969868906988987
No 7
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=1.00 E-value=1 Score=130.47 Aligned_cols=134 Identities=17% Similarity=0.218 Sum_probs=91.6
Q ss_pred CCCCCCCCHH-HHHHCCC-CC-CHHHHHHHHHHCCHHHCCC-------------CCCCCEEEEEEEECCCEEEEEECCCC
Q ss_conf 3102588977-8850789-89-9899999994110210012-------------89970699999616985999979999
Q 000400 140 NMWDLTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWT-------------NAKNERRLISVNIAEDKISVFDTGPG 203 (1566)
Q Consensus 140 n~~DL~Ps~~-lL~~Lg~-~Y-sl~sAIAELVDNSIDA~~~-------------Na~A~~I~I~I~~d~~~I~I~DNG~G 203 (1566)
.++.+..+++ +|..++. -| +...+|+|||+||+||..+ .+...+|.|.++-+...|+|.|||+|
T Consensus 5 e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiG 84 (624)
T 2ioq_A 5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVG 84 (624)
T ss_dssp ----------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSCC
T ss_pred CCEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCC
T ss_conf 43320413999999998733798579999999979986565677642681003678874799999689748999989989
Q ss_pred CCHHHHHHHHHCCCCCCCHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECC--CCEEEEEEEE
Q ss_conf 99676967530133453210000-011468999998997653346213445303477999995079--8149999973
Q 000400 204 MDSTDENSIVKWGKMGASLHRAS-KAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKV--SKEVYTLHLE 278 (1566)
Q Consensus 204 MS~deL~~a~kWG~~G~S~kR~~-~a~~~Ggk~p~~r~~LGRFGVGlK~ASfsLGr~vtViTK~~g--s~~v~el~Ld 278 (1566)
|+++++.+ .|++.+.|..+.. .+...+ .......+|+||+|+. ++|+++++++|+||+.+ ....+.|..+
T Consensus 85 Mt~edl~~--~l~tiA~Sg~~~f~~~l~~~--~~~~~~~iG~fGvGfy-S~f~VadkV~V~Sr~~~~~~~~~~~w~s~ 157 (624)
T 2ioq_A 85 MTRDEVID--HLGTIAKSGTKSFLESLGSD--QAKDSQLIGQFGVGFY-SAFIVADKVTVRTRAAGEKPENGVFWESA 157 (624)
T ss_dssp CCHHHHHH--HHHHHCC-----------------CCTTHHHHHHHHHH-HHHHHEEEEEEEEECTTSCGGGEEEEEEC
T ss_pred CCHHHHHH--HHHHHCCCCCHHHHHHHCCC--CCCCCCCCCCCCCCHH-HHHHCCCEEEEEECCCCCCCCEEEEEEEE
T ss_conf 89999999--98766055617789873011--1135444588884379-89705786999977899888725999993
No 8
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=1.00 E-value=1 Score=130.26 Aligned_cols=412 Identities=15% Similarity=0.165 Sum_probs=205.0
Q ss_pred CCCCCCCCHH-HHHHCCC-CC-CHHHHHHHHHHCCHHHCCC-------------CCCCCEEEEEEEECCCEEEEEECCCC
Q ss_conf 3102588977-8850789-89-9899999994110210012-------------89970699999616985999979999
Q 000400 140 NMWDLTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWT-------------NAKNERRLISVNIAEDKISVFDTGPG 203 (1566)
Q Consensus 140 n~~DL~Ps~~-lL~~Lg~-~Y-sl~sAIAELVDNSIDA~~~-------------Na~A~~I~I~I~~d~~~I~I~DNG~G 203 (1566)
.++.+..+++ +|..++. -| ++..+|+|||+||+||..+ .+...+|.|.++-+...|+|.|||+|
T Consensus 5 e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiG 84 (559)
T 1y4s_A 5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVG 84 (559)
T ss_dssp EEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSSC
T ss_pred CCEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEEECCCCEEEEEECCCC
T ss_conf 53210303999999998743798489999999879987576777642681112678764799999689858999989988
Q ss_pred CCHHHHHHHHHCCCCCCCHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCC--CEEEEEEEEHH
Q ss_conf 99676967530133453210000-0114689999989976533462134453034779999950798--14999997326
Q 000400 204 MDSTDENSIVKWGKMGASLHRAS-KAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVS--KEVYTLHLEKE 280 (1566)
Q Consensus 204 MS~deL~~a~kWG~~G~S~kR~~-~a~~~Ggk~p~~r~~LGRFGVGlK~ASfsLGr~vtViTK~~gs--~~v~el~Ld~e 280 (1566)
|+++++.+ .|++.+.|..+.. .+.. .........+|+||+|+. ++|+++++++|.||+.+. ...+.|..+.
T Consensus 85 Mt~edl~~--~l~tiA~Sg~~~f~e~l~--~~~~~~~~~iG~fGvGfy-S~f~VadkV~V~Sr~~~~~~~~~~~w~s~g- 158 (559)
T 1y4s_A 85 MTRDEVID--HLGTIAKSGTKSFLESLG--SDQAKDSQLIGQFGVGFY-SAFIVADKVTVRTRAAGEKPENGVFWESAG- 158 (559)
T ss_dssp CCHHHHHH--HHSCCSCCCCCCTTCC----------CCCCSSCCCSGG-GHHHHEEEEEEEEECSSSCGGGEEEEEECS-
T ss_pred CCHHHHHH--HHHHHCCCCCHHHHHHHH--CCCCCCCCCCCCCCCCHH-HHHHCCCEEEEEECCCCCCCCEEEEEEEEC-
T ss_conf 89999999--976551556277898741--111135443488876356-564145768999757998887248999937-
Q ss_pred HHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCC------CCCHHHHHHHHHHHCCCCCCCCC-CCCCC
Q ss_conf 775113456750215887799955466899998169999589777------75725799999723088631233-45799
Q 000400 281 ALMRCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPKLK------SLDVKPLGCKLKDIYFPYIQCDE-ISSTG 353 (1566)
Q Consensus 281 ~L~~~s~~d~ew~l~~~ir~ps~eEi~~s~hGTFT~VVI~eLk~~------~~~i~~Lrr~La~IYhpyL~~d~-ls~~G 353 (1566)
...|.+.. ....++|| +|++. ++.. .+.+..+-+..+....+.|.... -...|
T Consensus 159 --------~~~~~i~~---------~~~~~~GT--~I~L~-Lk~d~~Efle~~~I~~iv~kys~fi~~PI~~~~~e~~~~ 218 (559)
T 1y4s_A 159 --------EGEYTVAD---------ITKEDRGT--EITLH-LREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDG 218 (559)
T ss_dssp --------SSEEEEEE---------ECCCSCEE--EEEEE-ECTTCGGGSCHHHHHHHHHHHHTTCSSCEEEEEEECSTT
T ss_pred --------CCEEEEEE---------CCCCCCCE--EEEEE-ECCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf --------97358867---------77789983--99999-765554235099999999997345787538961145566
Q ss_pred CCCCCEEEEECCEECCCCCCCCCEE---ECCCCC--CC-CCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 7666659976773211136972012---011235--99-97169999975126544579998898643189999961257
Q 000400 354 KTTRPIEFQVNGIDLAEVAGGEVAI---TNMHSC--NG-PDFILQLHFSLRQASATTNSPGSRPSKEANARLKFVYFPVT 427 (1566)
Q Consensus 354 k~i~pIei~Vng~~L~eIegd~v~~---~~l~~~--~g-~~f~fel~~~v~~~~~~lr~Pg~~~~~~g~V~g~~~YfPf~ 427 (1566)
+.....+..-++..++.-..+.++. ...|-. +. ..-.+.+|+.+ ++ .-..+|.+ |+|-.
T Consensus 219 ~~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~-------------eg-~~~~~gll-~~P~~ 283 (559)
T 1y4s_A 219 ETVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRV-------------EG-KQEYTSLL-YIPSQ 283 (559)
T ss_dssp SCEEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHTCSSCEEEEEEECC-------------CS-SSCEEEEE-EEESS
T ss_pred CCCCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECC-------------CC-CEEEEEEE-ECCCC
T ss_conf 54332289757832222586403099999998764132424838998325-------------78-56999999-90786
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHEEEEEEECCCCC
Q ss_conf 88863237768753038754434565542100145502575432234453011003520012777640242654079998
Q 000400 428 EEGESIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGF 507 (1566)
Q Consensus 428 ~~kEt~p~~l~~L~~~g~~~~~~Fe~F~~vsvrw~GRLIP~a~w~~L~Fm~~~~krg~k~~i~~e~~~Rvkg~lf~~~~F 507 (1566)
.--+ +.... .-.++.++-+||+|-+-- ++.+| +|.+=|+|.++..+ -
T Consensus 284 ~p~~--------~~~r~--------~~~~i~lyvn~v~I~d~~---------------~~llP-~~l~fv~gvVDs~d-l 330 (559)
T 1y4s_A 284 APWD--------MWNRD--------HKHGLKLYVQRVFIMDDA---------------EQFMP-NYLRFVRGLIDSSD-L 330 (559)
T ss_dssp CCTT--------CSSSS--------CCCCEEEEETTEEEEEEE---------------GGGSC-GGGTTCEEEEEESS-S
T ss_pred CCCH--------HHHHC--------CCCCEEEEECCEEEECCH---------------HHHCH-HHHHHEEEEECHHH-C
T ss_conf 7610--------22021--------368769999587933612---------------30474-75725467407622-7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH-----------CCCCCCC
Q ss_conf 87888331121032899998323566556664069996177123223146999999998863-----------0223223
Q 000400 508 NPTPSKTDLAHQNLYTIALKNFGAKTFKEEKDVTVEIRRDGKLLTPIQLEKDYQEWLLNMHD-----------HYDAEKD 576 (1566)
Q Consensus 508 ~vT~nKl~l~~~~~~~~aL~~~~~k~~dk~~~~~~~i~~~~~~l~~~~i~~ef~~WL~~CHe-----------~yDkq~~ 576 (1566)
++.-|+..|-. +.+...+. -.|.+...+||.++-+ .|-+-++
T Consensus 331 plNVSRE~lq~-~~~l~~I~--------------------------~~l~kkv~~~l~~l~~~d~e~y~~f~~~f~~~lK 383 (559)
T 1y4s_A 331 PLNVSREILQD-STVTRNLR--------------------------NALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLK 383 (559)
T ss_dssp CTTCCTTGGGG-CHHHHHHH--------------------------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred CCEECCHHHHH-HHHHHHHH--------------------------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 97217534423-38999999--------------------------9999999999999874199999999999867755
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCEEEEEEEEEC-CEEEECCCEEEEECCCCCCCCCCEEEEEEEEEE-------ECCCC
Q ss_conf 6889752451233578754334722799999978-902004644897045555633320254333455-------30767
Q 000400 577 CGVDQPILLVGHKNIKPLVISTDVARVHKVVKKK-GAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFV-------IEGLQ 648 (1566)
Q Consensus 577 f~~d~~~~f~~~~~k~~Lg~~~~~~~v~k~I~~~-gk~~~~Gq~Vkl~k~~~pG~~~~~~ygtie~Fl-------~~~~~ 648 (1566)
.|- .....+|..+. +-.+++.+-..+ ++..+-.+-|.-.|. | .+.+||-|.+-+= ++.+
T Consensus 384 ~G~-----~~D~~~~~~l~---~ll~f~ss~~~~~~~~~sL~eY~~rmk~---~-q~~IyY~t~~~~~~~~~sp~~e~~- 450 (559)
T 1y4s_A 384 EGP-----AEDFANQEAIA---KLLRFASTHTDSSAQTVSLEDYVSRMKE---G-QEKIYYITADSYAAAKSSPHLELL- 450 (559)
T ss_dssp TST-----TTCGGGHHHHH---TTCEEBCSSCSSSSCCEETTSSSTTCCT---T-CSCCBEECCSSSHHHHTCSSSHHH-
T ss_pred HHH-----CCCHHHHHHHH---HHHEEEECCCCCCCCEEEHHHHHHHCCC---C-CCEEEEEECCCHHHHHHCHHHHHH-
T ss_conf 420-----04898999998---7417510577767871639999975435---5-755999938988988608288999-
Q ss_pred CCCCCCEEEEEECCCCC
Q ss_conf 89987249996204568
Q 000400 649 GDAGGEARIICRPLAVP 665 (1566)
Q Consensus 649 g~~gGe~~i~~rP~~l~ 665 (1566)
...|=||-+.-.|++-|
T Consensus 451 ~~kg~eVl~~~~~iDe~ 467 (559)
T 1y4s_A 451 RKKGIEVLLLSDRIDEW 467 (559)
T ss_dssp HHTTCCCEECCSTTHHH
T ss_pred HHCCCEEEEECCHHHHH
T ss_conf 85795699936757999
No 9
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=1.00 E-value=1 Score=129.69 Aligned_cols=180 Identities=19% Similarity=0.205 Sum_probs=108.6
Q ss_pred CCCCCCCCCCHH-HHHHCCC-CC-CHHHHHHHHHHCCHHHCCC--------C---CCCCEEEEEEEE--CCCEEEEEECC
Q ss_conf 223102588977-8850789-89-9899999994110210012--------8---997069999961--69859999799
Q 000400 138 FENMWDLTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWT--------N---AKNERRLISVNI--AEDKISVFDTG 201 (1566)
Q Consensus 138 ~~n~~DL~Ps~~-lL~~Lg~-~Y-sl~sAIAELVDNSIDA~~~--------N---a~A~~I~I~I~~--d~~~I~I~DNG 201 (1566)
..+.+.+.++.. ++..++. .| ++..+|+|||+||+||.+. + +....+.|.+.. ....|.|.|||
T Consensus 44 ~~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG 123 (264)
T 1yc1_A 44 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG 123 (264)
T ss_dssp CEEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECS
T ss_pred CCEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCEEEEEEEECC
T ss_conf 32468735889999999988602888899999987899886635544225731137897389999987984699999888
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCEEEEEEEEHH
Q ss_conf 9999676967530133453210000-011468999998997653346213445303477999995079814999997326
Q 000400 202 PGMDSTDENSIVKWGKMGASLHRAS-KAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKE 280 (1566)
Q Consensus 202 ~GMS~deL~~a~kWG~~G~S~kR~~-~a~~~Ggk~p~~r~~LGRFGVGlK~ASfsLGr~vtViTK~~gs~~v~el~Ld~e 280 (1566)
.||++++|.. .|+..+.|..+.. ..... ......+|+||+|++ ++|.++++++|.|++.+.. .+.|..+.
T Consensus 124 ~GMs~edL~~--~l~~ia~S~~~~f~~~l~~----~~d~~~iG~fGiGf~-S~f~va~~v~V~Sr~~~~~-~~~w~~~~- 194 (264)
T 1yc1_A 124 IGMTKADLIN--NLGTIAKSGTKAFMEALQA----GADISMIGQFGVGFY-SAYLVAEKVTVITKHNDDE-QYAWESSA- 194 (264)
T ss_dssp CCCCHHHHHH--HHHSCTTSCHHHHHHHHHT----TCCGGGGGGGTCGGG-GHHHHEEEEEEEEECTTSC-CEEEEECS-
T ss_pred CCCCHHHHHH--HHHHHCCCCCHHHHHHHCC----CCCHHHCCCCCCCCC-CCCCCCCEEEEEEECCCCC-EEEEEECC-
T ss_conf 6879999999--9876612343556666302----345223178777726-2024778789997069985-37999938-
Q ss_pred HHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCC---CCCCHHHHHHHHHHHCCCCCC
Q ss_conf 77511345675021588779995546689999816999958977---775725799999723088631
Q 000400 281 ALMRCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPKL---KSLDVKPLGCKLKDIYFPYIQ 345 (1566)
Q Consensus 281 ~L~~~s~~d~ew~l~~~ir~ps~eEi~~s~hGTFT~VVI~eLk~---~~~~i~~Lrr~La~IYhpyL~ 345 (1566)
...|.+.... .+ ..++|| +|++. ++. .+....+++. +..-|..||.
T Consensus 195 --------~~~~~i~~~~-----~~--~~~~GT--~I~l~-Lk~~~~e~~e~~~i~~-lv~k~s~fi~ 243 (264)
T 1yc1_A 195 --------GGSFTVRTDT-----GE--PMGRGT--KVILH-LKEDQTEYLEERRIKE-IVKKHSQFIG 243 (264)
T ss_dssp --------TTEEEEEECC-----SS--CCSSEE--EEEEE-ECGGGGGGGSHHHHHH-HHHHHTTTCS
T ss_pred --------CCEEEEEECC-----CC--CCCCCE--EEEEE-ECCCHHHHHHHHHHHH-HHHHHHHHCC
T ss_conf --------9658873047-----78--799792--99999-7782234535999999-9999996489
No 10
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=1.00 E-value=1 Score=126.58 Aligned_cols=179 Identities=16% Similarity=0.193 Sum_probs=107.9
Q ss_pred CCCCCCCCHH-HHHHCCC-CC-CHHHHHHHHHHCCHHHCCC-------------CCCCCEEEEEEEECCCEEEEEECCCC
Q ss_conf 3102588977-8850789-89-9899999994110210012-------------89970699999616985999979999
Q 000400 140 NMWDLTPDTD-LLRELPE-DY-TFETALADLIDNSLQAVWT-------------NAKNERRLISVNIAEDKISVFDTGPG 203 (1566)
Q Consensus 140 n~~DL~Ps~~-lL~~Lg~-~Y-sl~sAIAELVDNSIDA~~~-------------Na~A~~I~I~I~~d~~~I~I~DNG~G 203 (1566)
..+.+..+.. ++..+.. .| ++..||+|||+||+||.+. ++....|.|.++.....|.|.|||.|
T Consensus 25 e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG~G 104 (235)
T 2ior_A 25 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVG 104 (235)
T ss_dssp EEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECSSC
T ss_pred CCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCC
T ss_conf 10775362999999999863398999999987699999887776640374223778537999998289318999989989
Q ss_pred CCHHHHHHHHHCCCCCCCHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCC--CEEEEEEEEHH
Q ss_conf 99676967530133453210000-0114689999989976533462134453034779999950798--14999997326
Q 000400 204 MDSTDENSIVKWGKMGASLHRAS-KAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVS--KEVYTLHLEKE 280 (1566)
Q Consensus 204 MS~deL~~a~kWG~~G~S~kR~~-~a~~~Ggk~p~~r~~LGRFGVGlK~ASfsLGr~vtViTK~~gs--~~v~el~Ld~e 280 (1566)
|+++++.. .|+..+.|..+.. .... +........+|+||+|++ ++|+++++++|.|++.+. ...+.|..+.
T Consensus 105 Ms~edl~~--~~~~ia~S~~~~f~~~l~--~~~~~~~~~iG~fGiG~~-S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~- 178 (235)
T 2ior_A 105 MTRDEVID--HLGTIAKSGTKSFLESLG--SDQAKDSQLIGQFGVGFY-SAFIVADKVTVRTRAAGEKPENGVFWESAG- 178 (235)
T ss_dssp CCHHHHHH--HHTTCCCTTHHHHHHHCC--SCHHHHHHHHTTCCCCGG-GGGGTEEEEEEEEECTTSCGGGEEEEEECS-
T ss_pred CCHHHHHH--HHHHHCCCCCCCHHHHHC--CCCCCCCCCCCCCCHHHH-HHHHCCCEEEEEEECCCCCCCEEEEEEECC-
T ss_conf 89999999--987770456600555520--112356466798884188-897386968999961898884569999448-
Q ss_pred HHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCC---CCCHHHHHHHHHHHCCCCCC
Q ss_conf 775113456750215887799955466899998169999589777---75725799999723088631
Q 000400 281 ALMRCSDAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIWEPKLK---SLDVKPLGCKLKDIYFPYIQ 345 (1566)
Q Consensus 281 ~L~~~s~~d~ew~l~~~ir~ps~eEi~~s~hGTFT~VVI~eLk~~---~~~i~~Lrr~La~IYhpyL~ 345 (1566)
...|.+... ...++|| +|++. ++.. +....+++ ++..-|..||.
T Consensus 179 --------~~~~~i~~~---------~~~~~GT--~V~v~-Lk~~~~~~~e~~~i~-~lv~~ya~~l~ 225 (235)
T 2ior_A 179 --------EGEYTVADI---------TKEDRGT--EITLH-LREGEDEFLDDWRVR-SIISKYSDHIA 225 (235)
T ss_dssp --------SSEEEEEEE---------CCCSCEE--EEEEE-ECTTCGGGGCHHHHH-HHHHHHTTSCC
T ss_pred --------CCCEEEEEC---------CCCCCCE--EEEEE-ECCCHHHHCCHHHHH-HHHHHHHCCCC
T ss_conf --------996788637---------8899798--99999-767346647899999-99999855689
Done!