BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000401
         (1565 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With Bound
            Nadp And Gdp, Tetragonal Crystal Form
 pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With Bound
            Nadp And Gdp, Tetragonal Crystal Form
          Length = 319

 Score = 31.6 bits (70), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 41/159 (25%)

Query: 987  LVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEV-SLAAINCLQTTV 1045
            L  ++GG+ R ++    F          W   +H + +++L+ + EV +   ++CL T +
Sbjct: 68   LAAMVGGLFRNIKYNLDF----------WRKNVH-MNDNVLHSAFEVGARKVVSCLSTCI 116

Query: 1046 LSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFD- 1104
                T    P+          E  +   P ++ N                Y  A++M D 
Sbjct: 117  FPDKT--TYPID---------ETMIHNGPPHNSNFG--------------YSYAKRMIDV 151

Query: 1105 -DRMYGQLLAIIDLAVRQTMI--THDNYEIEFGHVPPVL 1140
             +R Y Q       AV  T +   HDN+ IE GHV P L
Sbjct: 152  QNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGL 190


>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With Bound
            Nadp And Gdp, Rhombohedral Crystal Form
 pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With Bound
            Nadp And Gdp, Rhombohedral Crystal Form
 pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With Bound
            Nadp And Gdp, Rhombohedral Crystal Form
 pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With Bound
            Nadp And Gdp, Rhombohedral Crystal Form
          Length = 320

 Score = 31.6 bits (70), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 41/159 (25%)

Query: 987  LVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEV-SLAAINCLQTTV 1045
            L  ++GG+ R ++    F          W   +H + +++L+ + EV +   ++CL T +
Sbjct: 69   LAAMVGGLFRNIKYNLDF----------WRKNVH-MNDNVLHSAFEVGARKVVSCLSTCI 117

Query: 1046 LSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFD- 1104
                T    P+          E  +   P ++ N                Y  A++M D 
Sbjct: 118  FPDKT--TYPID---------ETMIHNGPPHNSNFG--------------YSYAKRMIDV 152

Query: 1105 -DRMYGQLLAIIDLAVRQTMI--THDNYEIEFGHVPPVL 1140
             +R Y Q       AV  T +   HDN+ IE GHV P L
Sbjct: 153  QNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGL 191


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,036,747
Number of Sequences: 62578
Number of extensions: 1584190
Number of successful extensions: 3756
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3756
Number of HSP's gapped (non-prelim): 2
length of query: 1565
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1453
effective length of database: 7,964,601
effective search space: 11572565253
effective search space used: 11572565253
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)