Query 000401
Match_columns 1565
No_of_seqs 292 out of 698
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1848 Uncharacterized conser 100.0 1E-141 2E-146 1314.4 59.8 1423 1-1546 9-1600(1610)
2 PLN03076 ARF guanine nucleotid 100.0 2E-127 4E-132 1282.6 97.4 991 4-1074 11-1515(1780)
3 KOG0929 Guanine nucleotide exc 100.0 4.3E-91 9.3E-96 893.3 57.6 938 14-1073 11-1323(1514)
4 KOG0928 Pattern-formation prot 100.0 2.4E-69 5.1E-74 676.9 67.8 947 29-1066 45-1353(1386)
5 PF12783 Sec7_N: Guanine nucle 100.0 3.9E-28 8.5E-33 262.0 16.9 156 224-387 3-168 (168)
6 COG5307 SEC7 domain proteins [ 99.6 1.5E-13 3.3E-18 178.8 26.7 664 254-1046 27-1011(1024)
7 KOG1848 Uncharacterized conser 98.6 1.4E-06 3E-11 112.9 19.3 470 1009-1530 9-565 (1610)
8 PLN03076 ARF guanine nucleotid 98.4 0.0032 7E-08 88.5 46.0 533 880-1553 1129-1775(1780)
9 PF09324 DUF1981: Domain of un 97.8 1.1E-05 2.5E-10 76.9 3.5 46 739-784 41-86 (86)
10 KOG1846 Uncharacterized conser 96.8 0.12 2.7E-06 65.3 22.2 368 664-1067 848-1351(1777)
11 KOG0930 Guanine nucleotide exc 86.7 0.55 1.2E-05 52.8 3.3 20 439-458 152-171 (395)
12 PF01602 Adaptin_N: Adaptin N 79.0 1.5E+02 0.0032 38.2 21.7 106 5-120 113-222 (526)
13 PTZ00429 beta-adaptin; Provisi 76.6 2.9E+02 0.0062 37.4 27.6 127 255-401 270-399 (746)
14 PF01602 Adaptin_N: Adaptin N 76.3 1.9E+02 0.004 37.2 21.6 100 51-161 80-179 (526)
15 PF02985 HEAT: HEAT repeat; I 72.7 6.3 0.00014 30.0 4.0 28 890-917 2-29 (31)
16 PTZ00429 beta-adaptin; Provisi 69.3 4.1E+02 0.0089 36.0 30.8 50 308-363 382-431 (746)
17 PF12348 CLASP_N: CLASP N term 67.4 79 0.0017 35.8 13.5 104 254-368 23-126 (228)
18 KOG1949 Uncharacterized conser 63.4 1.6E+02 0.0036 38.3 15.5 110 899-1049 185-295 (1005)
19 PF08427 DUF1741: Domain of un 60.7 1.6E+02 0.0034 34.0 13.8 66 881-946 58-134 (237)
20 KOG0931 Predicted guanine nucl 57.8 9 0.0002 46.4 3.4 18 439-456 289-306 (627)
21 PF12719 Cnd3: Nuclear condens 56.9 62 0.0013 38.6 10.5 29 900-928 76-105 (298)
22 PF12719 Cnd3: Nuclear condens 50.1 1.4E+02 0.0031 35.5 12.0 70 16-85 71-149 (298)
23 PF12755 Vac14_Fab1_bd: Vacuol 40.9 1.4E+02 0.0031 29.4 8.3 72 795-916 23-95 (97)
24 PF12830 Nipped-B_C: Sister ch 40.3 1E+02 0.0022 34.1 8.1 89 49-142 7-96 (187)
25 KOG2171 Karyopherin (importin) 40.0 3.1E+02 0.0068 37.9 13.6 123 885-1048 115-237 (1075)
26 PF10521 DUF2454: Protein of u 39.3 6E+02 0.013 30.1 14.9 161 881-1071 112-275 (282)
27 PF11640 TAN: Telomere-length 37.3 3.4E+02 0.0073 29.0 11.3 126 894-1047 10-141 (155)
28 PF12348 CLASP_N: CLASP N term 37.3 6.4E+02 0.014 28.3 19.9 109 890-1047 96-207 (228)
29 PF09324 DUF1981: Domain of un 36.2 74 0.0016 30.6 5.4 53 985-1043 33-85 (86)
30 PF05004 IFRD: Interferon-rela 34.5 8.9E+02 0.019 29.1 19.0 154 985-1150 58-213 (309)
31 PF14500 MMS19_N: Dos2-interac 34.2 4.6E+02 0.01 30.7 12.6 65 740-807 106-171 (262)
32 KOG2171 Karyopherin (importin) 32.1 1.6E+03 0.035 31.5 26.1 148 883-1049 727-876 (1075)
33 PF03378 CAS_CSE1: CAS/CSE pro 31.3 9E+02 0.02 30.6 15.3 105 882-1030 240-352 (435)
34 PF10508 Proteasom_PSMB: Prote 31.2 3.9E+02 0.0086 34.4 12.5 136 20-163 88-231 (503)
35 KOG1993 Nuclear transport rece 30.9 1.5E+03 0.032 30.7 16.9 115 890-1050 528-648 (978)
36 PF10274 ParcG: Parkin co-regu 29.0 3.8E+02 0.0082 29.7 9.9 95 47-143 35-134 (183)
37 PF10508 Proteasom_PSMB: Prote 27.0 1.5E+03 0.032 29.3 26.1 129 253-399 217-347 (503)
38 KOG1824 TATA-binding protein-i 26.7 1.2E+03 0.026 32.1 15.1 163 897-1117 579-745 (1233)
39 cd00171 Sec7 Sec7 domain; Doma 26.7 46 0.001 36.8 2.6 21 439-459 93-113 (185)
40 PF08167 RIX1: rRNA processing 26.1 8.5E+02 0.019 26.3 12.3 101 262-374 4-110 (165)
41 KOG2956 CLIP-associating prote 25.8 5.6E+02 0.012 32.3 11.4 114 890-1048 289-402 (516)
42 smart00222 Sec7 Sec7 domain. D 25.1 51 0.0011 36.5 2.6 22 438-459 93-114 (187)
43 PF11864 DUF3384: Domain of un 24.3 6.1E+02 0.013 32.4 12.3 69 51-121 177-246 (464)
44 KOG0929 Guanine nucleotide exc 24.2 1.1E+03 0.024 34.3 15.1 230 882-1150 1065-1304(1514)
45 KOG2274 Predicted importin 9 [ 23.6 2.1E+02 0.0046 38.5 7.8 94 265-365 550-646 (1005)
46 PF12717 Cnd1: non-SMC mitotic 23.3 4.5E+02 0.0097 28.7 9.5 92 902-1047 2-93 (178)
47 KOG2023 Nuclear transport rece 22.8 3E+02 0.0065 35.9 8.6 60 752-811 123-186 (885)
48 PF08767 CRM1_C: CRM1 C termin 22.2 3.9E+02 0.0085 32.3 9.5 115 900-1050 83-198 (319)
49 PF04826 Arm_2: Armadillo-like 21.9 7.5E+02 0.016 28.9 11.4 129 9-141 12-143 (254)
50 PF01369 Sec7: Sec7 domain; I 21.7 65 0.0014 35.8 2.6 22 438-459 96-117 (190)
51 cd00020 ARM Armadillo/beta-cat 21.6 1.7E+02 0.0036 28.7 5.4 105 50-162 7-119 (120)
52 cd00020 ARM Armadillo/beta-cat 21.6 2.2E+02 0.0048 27.8 6.3 69 13-81 11-80 (120)
53 KOG4646 Uncharacterized conser 20.4 6.3E+02 0.014 26.7 8.9 110 47-162 55-169 (173)
No 1
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.9e-142 Score=1314.36 Aligned_cols=1423 Identities=31% Similarity=0.373 Sum_probs=1055.9
Q ss_pred CchHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHhcCCCCCc----ccC-chHHHHHHHHHhcCCCchHHHHHHHHHH
Q 000401 1 MALMAVLESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSE----LAQ-SEDILRIFLMACEVRTVKLSVIGLSCIQ 75 (1565)
Q Consensus 1 m~~~~~L~~dL~~L~~EskRK~~~lk~A~e~al~~Lk~~~~~~~----l~~-~~~~l~Pfllac~sk~~kl~~iaL~~lq 75 (1565)
|+++++|.+||++|++||||||++||+|||+++++||+..+.++ +.. +++|+.||++||.+|+.|++.+||+|||
T Consensus 9 ~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s~ds~vlet~~edf~~PfllaC~sr~tRl~~ials~iQ 88 (1610)
T KOG1848|consen 9 MSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSASRDSDVLETPNEDFLVPFLLACISRNTRLFVIALSCIQ 88 (1610)
T ss_pred HHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhccccccccccccCCcccccceeeecccCcccceeeHHHHHH
Confidence 78999999999999999999999999999999999999999876 444 8999999999999999999999999999
Q ss_pred HHHccCCCCcchHHHHHH-HHHhccCCCCchHHHHHHHHHHHHHcCCCCccChHHHHHHHHHhhhcccccCChHHHHHHH
Q 000401 76 KLISHDAVAPSALKEIFS-MLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTA 154 (1565)
Q Consensus 76 kLis~~~i~~~~l~~il~-~l~~~~~~~de~vqLKILQ~L~~l~~s~~~~i~g~~L~~~l~~C~~L~~~sk~~~~v~~TA 154 (1565)
||..|++++++...++++ .|+.+... +.+|||+||++|.++++|...+.|+.|.+++.+||+|+. +|++ +|.|||
T Consensus 89 kL~~~dsleps~~aeildn~L~a~~qa--e~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~-~knk-vV~NaA 164 (1610)
T KOG1848|consen 89 KLGRHDSLEPSVTAEILDNNLWAAAQA--EWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLY-QKNK-VVFNAA 164 (1610)
T ss_pred HHhccCCCCCcccHHHHHHHHHHHHHH--HHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHc-CCCc-ceechh
Confidence 999999999965555544 45544333 568999999999999999999999999999999999975 5778 999999
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCCCCCCCCCccccccccCCcccccCCCCcccccccCCCCcccccchhhhHHHHHHHHH
Q 000401 155 AATFRQAVALIFDHVVRAESLPMGKFGSGAHITRTNSVTGDVSRSINHSESLEHEFASEGPSLRRETLTKAGKLGLRLLE 234 (1565)
Q Consensus 155 ~ATL~Qlv~~VF~rv~~~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~da~~vf~ 234 (1565)
+||+||+|..|||||..+.+. .+.. -+. .....+ .+.+......+++..+|++..|.
T Consensus 165 aAtlrQlV~~vFdrv~ies~~-~d~~---l~s-----l~~~s~--------------t~sl~aa~~~~~~l~~dI~~~~~ 221 (1610)
T KOG1848|consen 165 AATLRQLVLLVFDRVPIESDA-FDFI---LPS-----LTEASG--------------TSSLEAALTALDPLQKDICVGFE 221 (1610)
T ss_pred HHHHHHHHHHHHHhccccccc-cccc---chh-----hhccCC--------------ccchhhcccccchHHHhHhcchH
Confidence 999999999999999864221 1110 000 000000 00000013345788899999999
Q ss_pred HHHHhccCCCCCcc-cccchhhHhhHHHHHHHHHcCccccccCHHHH--HHHHHHHHHHHHHhhccccc-------CC--
Q 000401 235 DLTALAAGGSASWL-HVNTLQRTFVLDILEFILSNHVSLFRMLVSYE--QVLRHQICSLLMTSLRTNVE-------NE-- 302 (1565)
Q Consensus 235 dLc~L~~~e~p~~l-~~~~~~k~~~LELiesiL~~~~~~F~~~pel~--~llr~~lc~lLi~~ls~n~~-------~~-- 302 (1565)
++|.+..+..++|| .+.+.++..|+|++|+++.+....+..|.+|. ++++..+||++.+++..++. .+
T Consensus 222 ~i~l~~~~~~~~~L~~Iee~~~s~~~elLesilks~~s~~dq~qdf~~a~ll~~~~~Py~~Rl~~~sv~~i~~l~~~ea~ 301 (1610)
T KOG1848|consen 222 NIQLMYPAIFDQLLAFIEESTKSPGLELLESILKSNASKSDQIQDFAPAELLALNVVPYAERLLLRSVDLIQKLACHEAV 301 (1610)
T ss_pred HHHHhcccccHhHHhcchhccccchhhhhhhhhhcchhhhHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999998 57789999999999999999999999999999 99999999999997654421 00
Q ss_pred --------------------CCCCcccHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 000401 303 --------------------GETGEPYFR--RLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEIL 360 (1565)
Q Consensus 303 --------------------~~~~~~~F~--~~~lRi~~~Li~~~~~~Lk~E~EvfLs~l~~~L~~~~~~w~r~L~LE~l 360 (1565)
+-.+...|+ .-..+.....+..|-..+..++++|++.+++.-..+.+.|+|.+.+|++
T Consensus 302 ~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~s~~~~~~p~~l~~~~~ 381 (1610)
T KOG1848|consen 302 VNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFDSMDLELWPRFLDFLFL 381 (1610)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhhhcCcccCccHhHHHhh
Confidence 000111111 0122233333444556778899999999999988999999999999999
Q ss_pred HHHhcChHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhhccccc-------cCchhhHHhhhh-cccCccccchhccccC
Q 000401 361 RGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQFQ-------ETSEESLSAVAG-MFSSKAKGIEWILDND 432 (1565)
Q Consensus 361 ~~l~~dp~ll~~iy~nYD~~~~~~nI~~~li~~L~~~~~~~~~~-------~~s~e~l~~~~g-~f~~k~kGi~~ll~~d 432 (1565)
++++.++..++.+++|+||++...++++..+..+++++....+. +...++.+.+.| .|..|.+||+|-.+.|
T Consensus 382 ~siv~k~dsi~~~trn~diktk~thlldk~~~plan~vy~~lv~ti~nsi~e~l~k~s~esg~~eFt~k~k~Ie~~~dnd 461 (1610)
T KOG1848|consen 382 KSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFVYKELVGTISNSIQEMLNKSSIESGGSEFTSKEKGIELREDND 461 (1610)
T ss_pred ccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhHHHHHHHhhhHHHHHHHHHhHHhhcCccchhhhcCceeeccCc
Confidence 99999999999999999999999999999999999998743321 222233333344 7888889999865555
Q ss_pred cCCCcccCCchhhHHHHHHHHHHHHHhHhhhcccccccCCCCCCCCCCCCCCCccCC-CchHHHHHHHHHhhHHHHHHHH
Q 000401 433 ASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEAVDVGELESPRCDYDPLPKCMG-ETAVLCISMVDSLWLTILDALS 511 (1565)
Q Consensus 433 ~~~~~~ll~~Ea~~I~~~~e~~a~~i~sv~~ltd~~~~~g~~~~p~~e~~~~~~~~~-~~~~~~~~m~e~~W~~iLaalS 511 (1565)
+...+.++--+.-.+..+-|++..+.++++.+.+.+.+.+.+..+.....+...-.+ ...+....|+.+.|+.++++++
T Consensus 462 s~stavl~~l~~~~~~li~e~~~ss~~avSt~~~~a~~v~~l~~~~~~~s~k~~l~~~~kLe~i~~a~~snq~tildalk 541 (1610)
T KOG1848|consen 462 SMSTAVLLQLSFSNKVLIPEGLYSSRMAVSTLLKRAQDVLHLYIEDEVLSNKCPLPRQTKLEIIFDAVLSNQSTILDALK 541 (1610)
T ss_pred hHHHHHHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHHHHhhhhhhhccCCccccceeehhHHHHHhhccccHHHHhh
Confidence 432222111111112222233333333333332222111111111000001000001 1234556789999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCCCCcccccc-cccCCCCCC---c--------
Q 000401 512 LILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSA-VLQSPGSKR---S-------- 579 (1565)
Q Consensus 512 ~~l~~s~De~~~~~~L~gfq~~a~vag~l~L~~~rDafl~~L~k~t~~~~~~~~~~~~-~~~~~g~~~---~-------- 579 (1565)
..+.++.|+.+.+.++.+++.++..||+.+-+++..+++..||+|....+...+.... +..+|..++ +
T Consensus 542 s~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~lr~l~s~Spv~gr~~~sew~~dfet 621 (1610)
T KOG1848|consen 542 STLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRLRCLNSESPVVGRKMGSEWKIDFET 621 (1610)
T ss_pred hhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHHhhccccCccccccCCcceEEEEee
Confidence 9999999999999999999999999999999999999999999999854422111000 000110000 0
Q ss_pred ---------------cccccccCCccCChhHHHHHHHHHHHHHhhcccccccHHHHHHHHHHhHHhhcC-CCCCcccccc
Q 000401 580 ---------------ESLVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHS-PHATTQEVST 643 (1565)
Q Consensus 580 ---------------~~~~~~~~~~~l~~KNi~~lraLl~lA~~lG~~L~~SW~~IL~tlq~l~~~l~~-p~~~~~~~~~ 643 (1565)
-.++.+..++.++.||+++.|+++++++.+-..++.+|..++.|...+|+..+. |..+.....+
T Consensus 622 w~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~llm~t~~~ls~~~~m~p~qt~l~v~t 701 (1610)
T KOG1848|consen 622 WDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLLMYTTSSLSQPAYMEPLQTLLAVIT 701 (1610)
T ss_pred ccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcchhhcCHHHhhHHHHh
Confidence 001112356889999999999999999999999999999999999999998765 5444333332
Q ss_pred cCccccccC----CCcccchhHHHHhhHhhhhhcccCCHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCCCCCCceeehHH
Q 000401 644 ASSKLARES----SGQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVE 719 (1565)
Q Consensus 644 ~~p~~~~~~----~~~~~d~~i~~s~~~~LFesS~~l~~~a~~~fi~ALc~lS~e~i~~~~~~~~~~~~~~~~~~~F~l~ 719 (1565)
..+..+.+. ..+++|+.+++++.+++|.+++.++..++..++.||.++|.+.+........... +.-.+.++
T Consensus 702 ~~~~hp~~p~~~~~~~ynd~~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~~~~ssl----r~~~~~l~ 777 (1610)
T KOG1848|consen 702 SSSVHPIQPLTAPRQSYNDDLLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILETVCSCSSL----RFLDSKLD 777 (1610)
T ss_pred cCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhcccccc----ccccchhh
Confidence 222222211 1346788889999999999999999999999999999999986543322111000 00001111
Q ss_pred HhHHHHHhccccchhhHH--------------------------------------------------------------
Q 000401 720 RMISILVNNLHRVEPLWD-------------------------------------------------------------- 737 (1565)
Q Consensus 720 kl~eva~~N~~Ri~~~W~-------------------------------------------------------------- 737 (1565)
-.......|-.|....|.
T Consensus 778 v~~~~~~l~e~snq~~~~naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~e 857 (1610)
T KOG1848|consen 778 VSGWSLILKELSNQFKIINAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVE 857 (1610)
T ss_pred hhHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccce
Confidence 111111111111222222
Q ss_pred ------HHHHHHHhhccccccCCcHHHHHHHHHhhhc---cchhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHH
Q 000401 738 ------QVVGHFLERCGEKLHYSWPSILELLRSVADA---SEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYS 808 (1565)
Q Consensus 738 ------~i~~hlie~~g~~L~sgW~~If~iL~~~~~~---~~~~lv~~aF~~L~lI~~dfL~~Lp~~~~~~lV~~L~~F~ 808 (1565)
...-|++|++|+.+.+||+.||++|+++++. +|+++|++||++|++|++|||++||.+|+..|||++..|+
T Consensus 858 vr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs 937 (1610)
T KOG1848|consen 858 VRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFS 937 (1610)
T ss_pred eeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHH
Confidence 2234455999999999999999999998774 4889999999999999999999999999999999999999
Q ss_pred hcCCCcchhHHHHHHHHHhHHHHHcccCCCcchhhhhhhcccCCCccccCcchhhhhhcccccccCCCCCchhhhhhHHH
Q 000401 809 SQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFA 888 (1565)
Q Consensus 809 ~q~~dlNISLtAi~llW~isD~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~ 888 (1565)
+|++|+||||||||+||+++||+++++. +..++....+ ..|+..+. .+.+...++++|+.
T Consensus 938 ~QktdlNISltAi~lfWtvsDfl~~km~--S~sed~~~~~------------~~e~~~ss------~~~~~~l~e~lwi~ 997 (1610)
T KOG1848|consen 938 RQKTDLNISLTAIGLFWTVSDFLKNKMF--STSEDSCAYN------------SVEDLYSS------MKSKEILPEVLWIM 997 (1610)
T ss_pred hhhccccccHHHHHHHHHHHHHHHhhhh--ccchhhhhhc------------chhhhccc------ccchhhhhhHHHHH
Confidence 9999999999999999999999997522 2212211110 01111111 11222447899999
Q ss_pred HHHHHHhhccCCcHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHhHHhhHHhhhhhcccCCcccccccccccCCCccc
Q 000401 889 VFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAV 968 (1565)
Q Consensus 889 LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~~~~~~~~~~~~~~~~ 968 (1565)
||..|+++|.|+|+||||||+||||||+.+||+.|++.+|+.|+|+|++|||+..... + .+||+|++
T Consensus 998 ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q--~--~~ewngke--------- 1064 (1610)
T KOG1848|consen 998 LLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQ--N--VSEWNGKE--------- 1064 (1610)
T ss_pred HHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhcccccc--c--hhhhcchh---------
Confidence 9999999999999999999999999999999999999999999999999999988532 1 35676654
Q ss_pred hhhcccccchhhhhHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Q 000401 969 HMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSH 1048 (1565)
Q Consensus 969 ~~~v~hsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~l~~f~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~~~ 1048 (1565)
.||||.||.+++++|++|+|..||..|..+.+|.+.|+.+|+|+.++...++.+++.++++|||+++...
T Consensus 1065 ----------iqkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1065 ----------IQKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred ----------HhhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 2699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChH---HHHHHHHHHHHhhcCCCCCCCCCCccchHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHccc
Q 000401 1049 STKGNLPVA---YLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYV--QAQKMFDDRMYGQLLAIIDLAVRQTM 1123 (1565)
Q Consensus 1049 ~~~~~~~~~---~~~~~~~~w~~i~~~~~~~~~~~~~~~~q~~l~~f~~ly~--~~~~~~~~~~~~~~l~~l~~~~~~~~ 1123 (1565)
...++++.. ....++..|+.+++.++.+..++..++.||.+.+|+..|+ .+++.+..+.++..+..++.++.||.
T Consensus 1135 i~~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~~vqs~sk~d~~~~e~~~~slll~~kai~yp~ 1214 (1610)
T KOG1848|consen 1135 IEFGKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGLIESVQSLSKADNFGIEEIKDSLLLVRKAIFYPE 1214 (1610)
T ss_pred hhhccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhhHHHHHHHHhhcchhHHHHHHHHHHhhhccccCC
Confidence 988888776 5566677888777776666666678899999999998888 45667778999999999999999998
Q ss_pred CCCCCCccccCCCCHHHHHHHHhccccCCCccchhhHHHHHHHHHccCCCCCCcCCCCCC-CCCCCCCCCCccccccccc
Q 000401 1124 ITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLPRSDSPLQKKED-EEEPPSTSDNIHDVHVRTK 1202 (1565)
Q Consensus 1124 ~~~~~~~~d~~~~s~lQ~~vl~~l~~i~~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~ 1202 (1565)
++. +..|... ||+|.+|++.++.+.+++ ...+|..++.....+.+.++.-+..... +++. +..
T Consensus 1215 ~~~--ft~d~hv-psvq~avls~ld~l~~~~-~~~~~lvLl~~sthltpafdt~l~~~k~~~~g~------------~~~ 1278 (1610)
T KOG1848|consen 1215 STS--FTLDVHV-PSVQLAVLSLLDLLISDK-FKLNHLVLLLWSTHLTPAFDTRLKITKKLGPGL------------PKE 1278 (1610)
T ss_pred Cch--hhhhccC-ChHHHHHHhhcchhccCc-cccchhHHHHHhhhhhhhhhhhhhhhhccCCCC------------chh
Confidence 776 8888766 889999999999999844 4566666666666666665532211100 0000 000
Q ss_pred cCCCCCCCCCCcchhhhhhcccCCccccchhHHHHHhHhHHHHHHhhhcchhhhcchhHHHHHhhcc-ccccCCCCCCCc
Q 000401 1203 YDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFPEIIQNLGR-CMTTRRDNPDSS 1281 (1565)
Q Consensus 1203 ~~~~~a~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ii~~~~~-~~~~k~~~~~~~ 1281 (1565)
-.++-|...+ + + .-...+.-++++.++-....+++++.+.++--+++...-+.+ ||+.-+.+|+.|
T Consensus 1279 e~~~das~et----l---~------~~s~~t~rna~nkv~~~g~~~l~a~a~~~i~~f~ev~~rlkr~~~t~~r~npe~p 1345 (1610)
T KOG1848|consen 1279 EKTIDASLET----L---I------CLSKKTFRNAENKVENHGLDFLNAGAMQHIFEFLEVPMRLKRRCPTASRVNPELP 1345 (1610)
T ss_pred hhcccchhhh----h---H------HhhHHHhhhchhhhchhhHHHHhhhHHHHHHhhHHHHHHHHHHcccccccCCCCc
Confidence 0000000000 0 0 001123337888887777778888888776555555444444 344447888999
Q ss_pred cHHHHHHHHHHHHHhhhhhHhhh-----hcccccCChHHHHhhHHHHHHHHhhHhcccCC-C--CCCCCCCChhhccccc
Q 000401 1282 LWRLAVEGFNHILVDDVTKLAAN-----FWQDMKISRPARLRVWKEVADVYEIFLVGYCG-R--ALPSNSLSAVALSGAD 1353 (1565)
Q Consensus 1282 ~Wk~At~~~~~il~~~l~~~~~~-----~~~~~~~~~~~~~~~W~~v~~~~~~~l~~~~~-~--~~~~~~~~~~~~~~~d 1353 (1565)
+|++|..+|++..-.+....... ....+.+...+....|++..|++++++.+.|+ + +..+..++..... .+
T Consensus 1346 iwvlas~cF~~l~~~~fk~l~~~~~~~laet~l~lflt~~it~~rinpevd~~~~~~~cd~e~~~~ksl~l~a~~~l-~n 1424 (1610)
T KOG1848|consen 1346 IWVLASKCFVRLMINCFKDLKGSDAIELAETMLCLFLTVEITNSRINPEVDYEYVWSLCDFENSSLKSLHLLAKPHL-QN 1424 (1610)
T ss_pred eeeeeHhhHHhhHHHHHHHhccccccchhhhhhheeeEEEeeeeeeCcchhhhhhhhhcccccchhhhhhhccchhh-HH
Confidence 99999999999887665443221 00000122234567899999999999999988 3 2233445666777 89
Q ss_pred hhhchHHHHHhhhhccCCCCCCChHHhHhhHHHhhhccCCCCCCCccccccCccchhh--hHHHHHHHHHhhhcCCCccc
Q 000401 1354 ESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPAHCSK--FSLACLHKLFSLSSSDNEAS 1431 (1565)
Q Consensus 1354 E~~d~~~~~~l~~~il~~~~~~p~~~~~~l~~l~~~~~~r~~~~~~~t~~~~p~~r~r--~s~~c~d~Lf~l~s~~~~~~ 1431 (1565)
|.+++++++.++|.++.+..|.|.+.++|+++++++++.| ++.++.+.+..|+|..| .+|.||+.||+.....
T Consensus 1425 e~led~~i~~~~d~~l~~~~d~prn~l~rlistl~r~sqk-~ss~~fs~~~~~~hn~Rf~la~~Cf~~ll~ds~s~---- 1499 (1610)
T KOG1848|consen 1425 ECLEDEVIQYYIDLCLGSFYDQPRNTLDRLISTLNRDSQK-ASSNFFSSTESPVHNRRFRLAVDCFSILLDDSNSS---- 1499 (1610)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHh-hhccCccccccCccChhHHHHHHHHHHHHHhcchh----
Confidence 9999999999999999999999999999999999999988 77777777777777666 5666999999877531
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCChhHHHHHHHHHHHHhhcccCcccccCCCCCccccccccc
Q 000401 1432 KWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLKIHPDTASALPLHPVLKSGLAM 1511 (1565)
Q Consensus 1432 ~~~~~~~~~a~~a~p~Ll~Rc~~~L~~yi~Dq~l~G~~P~P~~r~~El~~vL~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 1511 (1565)
.+..|..+++++.|+|..||..+|++|++||...|..|+|+.|..||+++||+|..|.... +.+|.+
T Consensus 1500 -~~ntr~~vsk~~~p~L~aRc~~~Lsry~~Des~~G~lplpksr~~Eiit~lq~l~~l~~~L------~~np~l------ 1566 (1610)
T KOG1848|consen 1500 -YENTREKVSKTIRPILQARCCWSLSRYVADESVSGYLPLPKSREMEIITVLQCLNNLPSLL------YSNPIL------ 1566 (1610)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHhhcc------ccCchh------
Confidence 2338999999999999999999999999999999999999999999999999999998873 112221
Q ss_pred CcCCCcccchhhhhhhhhhheecchhHHHHHHHHH
Q 000401 1512 DENSDKRPHLLVLFPSFCELVISREARVRELVQVL 1546 (1565)
Q Consensus 1512 ~~~~~~~~hL~~lyp~l~~~v~~~~~~v~~ll~~~ 1546 (1565)
.+..++.||..|+|.+|+.++++.+++...-|++
T Consensus 1567 -~n~~~~~hl~~lsPs~~~~~p~~h~~~~l~~qvL 1600 (1610)
T KOG1848|consen 1567 -YNLRKAYHLTNLSPSATSLNPAIHGQLTLKNQVL 1600 (1610)
T ss_pred -hhHHHHHHHHhccHHHHhhhhhhhcccHHHHHHH
Confidence 1267899999999999999987776665554433
No 2
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=1.7e-127 Score=1282.58 Aligned_cols=991 Identities=23% Similarity=0.347 Sum_probs=744.7
Q ss_pred HHHHHHHHHHHHHH-HhhcChhHHHHHHHHHHHHhcCCCCC--------------cc--------------cCchHHHHH
Q 000401 4 MAVLESDLRALSAE-ARRRYPAVKDGAEHAILKLRSLSSPS--------------EL--------------AQSEDILRI 54 (1565)
Q Consensus 4 ~~~L~~dL~~L~~E-skRK~~~lk~A~e~al~~Lk~~~~~~--------------~l--------------~~~~~~l~P 54 (1565)
-.++.+-|..+++. ..|||+.+|+||+++++.||...... .+ .+++.++.|
T Consensus 11 ~~~~~~ale~i~~~k~~rk~~~l~~a~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p 90 (1780)
T PLN03076 11 GKVVSPALEKIIKNASWRKHSKLAHECKAVIERLNSPEKNPPSTSSAAADSASASSLPGPLHDGGSIEYSLAESELILSP 90 (1780)
T ss_pred hHHHHHHHHHHHhhHHhhccHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCHHHHHHH
Confidence 35788889998833 34789999999999999999754320 01 256779999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHccCCCCc----------chHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCCc
Q 000401 55 FLMACEVRTVKLSVIGLSCIQKLISHDAVAP----------SALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHP 124 (1565)
Q Consensus 55 fllac~sk~~kl~~iaL~~lqkLis~~~i~~----------~~l~~il~~l~~~~~~~de~vqLKILQ~L~~l~~s~~~~ 124 (1565)
|.+||+||++|++.+||+||||||+|++|+. ..++.+++++|+|.+.+||.|||||||+|+++++++.+.
T Consensus 91 l~lac~s~~~ki~~~ALdcl~KLis~~~i~~~~~~~~~~~~~lid~~i~~Ic~c~~~~de~iqLqilk~Ll~~v~s~~~~ 170 (1780)
T PLN03076 91 LINACGTGSAKIVDPALDCIQKLIAHGYLRGEADPSGGPEALLLAKLIESVCKCHDLGDEGIELLVLKTLLSAVTSTSLR 170 (1780)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHHHhhcCCCCCCCCCccccHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCce
Confidence 9999999999999999999999999999932 468889999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHHHHHhhhhhccc-CC------------CCCCCCCCCcccccc
Q 000401 125 ENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVVRAES-LP------------MGKFGSGAHITRTNS 191 (1565)
Q Consensus 125 i~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~~VF~rv~~~e~-~~------------~~~~~s~~~~~~~~~ 191 (1565)
+||+.|.+++++||++|..||++ ++++||+|||+|||..||+|++.... .+ .++..+ ..+.+..
T Consensus 171 vhg~~LLkaVR~cyni~l~Sks~-~nq~tA~atLtQmv~~VF~R~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 247 (1780)
T PLN03076 171 IHGDCLLQAVRTCYDIYLGSKNV-VNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMEPAEKSDS--DTSMTQF 247 (1780)
T ss_pred eEHHHHHHHHHHhheeeecCCcH-HHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccc--ccchhhh
Confidence 99999999999999999999999 99999999999999999999964221 00 000000 0000000
Q ss_pred ccCCcccc---------------------------------cCCC---------Ccc--cc-------cccCCCCcc---
Q 000401 192 VTGDVSRS---------------------------------INHS---------ESL--EH-------EFASEGPSL--- 217 (1565)
Q Consensus 192 ~~~~~~~~---------------------------------~~~~---------~~~--~~-------~~~~~~~~~--- 217 (1565)
+++.+++. .+.+ +.. .. ....+...+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1780)
T PLN03076 248 VQGFITKIMQDIDGVLNPATAGKSSGSGAHDGAFETTATVETTNPADLLDSTDKDMLDAKYWEISMYKSALEGRKGELAD 327 (1780)
T ss_pred hhhhhhhhccccccccCcccccccccccccccccccccccCCCCcchhhccccccccccccccccccccccccccccccc
Confidence 00000000 0000 000 00 000000000
Q ss_pred ----c--ccc---hhhhHHHHHHHHHHHHHhccCCCCCcc--cccch-hhHhhHHHHHHHHHcCccccccCHHHHHHHHH
Q 000401 218 ----R--RET---LTKAGKLGLRLLEDLTALAAGGSASWL--HVNTL-QRTFVLDILEFILSNHVSLFRMLVSYEQVLRH 285 (1565)
Q Consensus 218 ----~--~~~---~~~~~~da~~vf~dLc~L~~~e~p~~l--~~~~~-~k~~~LELiesiL~~~~~~F~~~pel~~llr~ 285 (1565)
. ... .....+|||+|||.||+|+.++.|..- +.+.+ +|.+|||||.++|+++|++|.+||.|+++||+
T Consensus 328 ~~~~~~~~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~~~~rsKllsL~Li~~ile~~g~~f~~~~~fi~~ik~ 407 (1780)
T PLN03076 328 GEVEKDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKILALELLKILLENAGAVFRTSDRFLGAIKQ 407 (1780)
T ss_pred ccccccchhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccHHHHHHHHHHHHHHHHHHhcccHhhhcCHHHHHHHHH
Confidence 0 000 022579999999999999998766331 22345 99999999999999999999999999999999
Q ss_pred HHH-HHHHHhhcccccCCCCCCcccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhccCC-C-cHHHHHHHHHHHH
Q 000401 286 QIC-SLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLV-KVTFLD-L-PLWHRILVLEILR 361 (1565)
Q Consensus 286 ~lc-~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~Lk~E~EvfLs~l~-~~L~~~-~-~~w~r~L~LE~l~ 361 (1565)
+|| .|+..+.++ ..++|. +++|||++|+.+||.+||.|+|+||+.++ ++++.. . +..||+++||+|.
T Consensus 408 ~Lc~sL~~n~~S~--------~~~vf~-lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~qK~~~L~~L~ 478 (1780)
T PLN03076 408 YLCLSLLKNSASS--------LMIIFQ-LSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLD 478 (1780)
T ss_pred HHHHHHHHHhcCC--------CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 999 555444443 367895 89999999999999999999999999865 566653 3 4789999999999
Q ss_pred HHhcChHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhhcccc-----------------------------------c--
Q 000401 362 GFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSVQF-----------------------------------Q-- 404 (1565)
Q Consensus 362 ~l~~dp~ll~~iy~nYD~~~~~~nI~~~li~~L~~~~~~~~~-----------------------------------~-- 404 (1565)
+||+||+++++||.|||||.++.||||+|++.|+|+++..+. +
T Consensus 479 ~lc~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl~~w~~~~~~ 558 (1780)
T PLN03076 479 KLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLR 558 (1780)
T ss_pred HHHhCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999974210 0
Q ss_pred --cC-----ch--------------------------------------hh----------HHhhhhcccCccc-cchhc
Q 000401 405 --ET-----SE--------------------------------------ES----------LSAVAGMFSSKAK-GIEWI 428 (1565)
Q Consensus 405 --~~-----s~--------------------------------------e~----------l~~~~g~f~~k~k-Gi~~l 428 (1565)
+. .+ +. +..+...||.||| ||+|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~FN~~Pk~Gi~~L 638 (1780)
T PLN03076 559 LPDPASLKKLDAVENNLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGISLFNRKPKKGIEFL 638 (1780)
T ss_pred CCcccccccchhhccccccccccccccccccccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 00 00 00 1124568999875 99886
Q ss_pred ccc-----CcC------------------------------------------CCc-----------ccCCchhhHHHHH
Q 000401 429 LDN-----DAS------------------------------------------NAA-----------VLVASEAHSITLA 450 (1565)
Q Consensus 429 l~~-----d~~------------------------------------------~~~-----------~ll~~Ea~~I~~~ 450 (1565)
..+ +|. +.+ ..+|||+|+|+|+
T Consensus 639 ~~~~~i~~~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRi 718 (1780)
T PLN03076 639 INANKVGESPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRI 718 (1780)
T ss_pred HHcCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHH
Confidence 432 110 111 1389999999999
Q ss_pred HHHHHHHH----------------hHhh--hc--------------------ccccccCCC-CCC-------------C-
Q 000401 451 IEGLLGVV----------------FTVA--TL--------------------TDEAVDVGE-LES-------------P- 477 (1565)
Q Consensus 451 ~e~~a~~i----------------~sv~--~l--------------------td~~~~~g~-~~~-------------p- 477 (1565)
||+||+.+ ++++ .| +.+|+|+|+ +|. +
T Consensus 719 me~Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~~~ei 798 (1780)
T PLN03076 719 MEKFAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEI 798 (1780)
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHhCcc
Confidence 99999732 1222 12 223677774 320 0
Q ss_pred --CCCC-------C-C---------------CCc----------------------c---C------CCchHHHHHHHHH
Q 000401 478 --RCDY-------D-P---------------LPK----------------------C---M------GETAVLCISMVDS 501 (1565)
Q Consensus 478 --~~e~-------~-~---------------~~~----------------------~---~------~~~~~~~~~m~e~ 501 (1565)
..|. . + +++ . . ..+..++++||+.
T Consensus 799 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~~a~~~~~~~~mfe~ 878 (1780)
T PLN03076 799 KMKEDDLVPQQKQSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAATDVVILRFMVEV 878 (1780)
T ss_pred cCcccccccccccccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCceeecchHHHHHHHHHH
Confidence 0000 0 0 000 0 0 0134567999999
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCCCCcccccccccCCCCCCccc
Q 000401 502 LWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSES 581 (1565)
Q Consensus 502 ~W~~iLaalS~~l~~s~De~~~~~~L~gfq~~a~vag~l~L~~~rDafl~~L~k~t~~~~~~~~~~~~~~~~~g~~~~~~ 581 (1565)
+|+|+|||+|..|+.++|+++++.||+||+.++|+||.|||+++||+|+++|||||.++ +|
T Consensus 879 ~W~p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~------------~~------- 939 (1780)
T PLN03076 879 CWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLH------------SP------- 939 (1780)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCC------------Ch-------
Confidence 99999999999999999999999999999999999999999999999999999999975 11
Q ss_pred cccccCCccCChhHHHHHHHHHHHHHhhcccccccHHHHHHHHHHhHHhhcCC-----CCC------------ccccccc
Q 000401 582 LVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSP-----HAT------------TQEVSTA 644 (1565)
Q Consensus 582 ~~~~~~~~~l~~KNi~~lraLl~lA~~lG~~L~~SW~~IL~tlq~l~~~l~~p-----~~~------------~~~~~~~ 644 (1565)
..++.||++|+|+||+||+.+||+|++||+.||+|+++++++...+ +.. .+.....
T Consensus 940 -------~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~ 1012 (1780)
T PLN03076 940 -------ADIKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPI 1012 (1780)
T ss_pred -------hhhhHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCcchhhhccccccccccccccccc
Confidence 2388999999999999999999999999999999999999986422 100 0000000
Q ss_pred Ccccc---------------c---cC-------CCcc--cc-------hhHHH----HhhHhhhhhcccCCHHHHHHHHH
Q 000401 645 SSKLA---------------R---ES-------SGQY--SD-------FNVLS----SLNSQLFESSALMHISAVKSLLS 686 (1565)
Q Consensus 645 ~p~~~---------------~---~~-------~~~~--~d-------~~i~~----s~~~~LFesS~~l~~~a~~~fi~ 686 (1565)
.|... + +. .... ++ +.++. ..++++|++|++|+++||++|++
T Consensus 1013 ~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~ 1092 (1780)
T PLN03076 1013 LPVLKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVK 1092 (1780)
T ss_pred ccccccccccccchhhhhhcccccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHH
Confidence 11100 0 00 0000 01 11111 23599999999999999999999
Q ss_pred HHHHhhhhhhcCCCCCCCCCCCCCCCceeehHHHhHHHHHhccccchhhHHH----HHHHHH------------------
Q 000401 687 ALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHRVEPLWDQ----VVGHFL------------------ 744 (1565)
Q Consensus 687 ALc~lS~e~i~~~~~~~~~~~~~~~~~~~F~l~kl~eva~~N~~Ri~~~W~~----i~~hli------------------ 744 (1565)
|||++|.++++... ..++|+++||+||+++||+|++.+|+. +.+||+
T Consensus 1093 AL~~vS~eEl~~~~-----------~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsL 1161 (1780)
T PLN03076 1093 ALCKVSMEELRSPS-----------DPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSL 1161 (1780)
T ss_pred HHHHhhHHHHccCC-----------CCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 99999999987532 227999999999999999999888877 555655
Q ss_pred --------------------------------------------------hhccccccCCcHHHHHHHHHhhhccchhHH
Q 000401 745 --------------------------------------------------ERCGEKLHYSWPSILELLRSVADASEKDLI 774 (1565)
Q Consensus 745 --------------------------------------------------e~~g~~L~sgW~~If~iL~~~~~~~~~~lv 774 (1565)
+.+|++|++||++||+||+.++.+.++.+|
T Consensus 1162 rQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV 1241 (1780)
T PLN03076 1162 RQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIV 1241 (1780)
T ss_pred HHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHH
Confidence 567889999999999999999998999999
Q ss_pred HHHHHHHHHHHhcCCCCCC---cchHHHHHHHHHHHHhcCCCcchhHHHHHHHHHhHHHHHcccCCCcchhhhhhhcccC
Q 000401 775 TLGFQSLRFIMNDGLSSIP---TDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLC 851 (1565)
Q Consensus 775 ~~aF~~L~lI~~dfL~~Lp---~~~~~~lV~~L~~F~~q~~dlNISLtAi~llW~isD~l~~~~~~~~~~~k~~~~~~~~ 851 (1565)
+.||+++++|++||++.+| .+||.+||+||.+|++|+.++||||+|+++||.|++++.+..... . .+........
T Consensus 1242 ~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~-~-~~~~~~~~~~ 1319 (1780)
T PLN03076 1242 LLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGS-S-SRNKDKEAPP 1319 (1780)
T ss_pred HHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccc-c-cccccccccc
Confidence 9999999999999999777 599999999999999999999999999999999999998642110 0 0000000000
Q ss_pred CC-ccccCcchhhhhhcccccccCCCCCchhhhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhhccCCCChhHHHH
Q 000401 852 SV-PKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWED 930 (1565)
Q Consensus 852 ~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~ 930 (1565)
+. ....++ .+ .. ....+..+...+|+|||.+|.++|.|+|+|||++||+|||++|.+||+.|++++|+.
T Consensus 1320 ~~s~~~~~~--~~-~~-------~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~ 1389 (1780)
T PLN03076 1320 SSPQSGKDG--KQ-ES-------GEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWER 1389 (1780)
T ss_pred ccccccccc--cc-cc-------cccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 00 000000 00 00 000112335689999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHhhHHhhhhhcccCCcccccccccccCCCccchhhcccccchhhhhHH-HHHHHHHHHHHHHHhhhhccccccc
Q 000401 931 CLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGIARLLRSFFPFLANLS 1009 (1565)
Q Consensus 931 ~~~~VLFPLl~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~v~hsr~~~~k~W~-ET~vlaL~gl~~lf~~~~~~L~~l~ 1009 (1565)
|||+||||||+.++........++++++++++ .| -+.+.++|. ||+++||+|+++||.+||+.|.
T Consensus 1390 if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~----------~~-~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~--- 1455 (1780)
T PLN03076 1390 VFESVLFPIFDYVRHAIDPSGGDEPEGQGVDG----------DQ-GELDQDAWLYETCTLALQLVVDLFVKFYPTVN--- 1455 (1780)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccc----------cc-cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 99999999999998553332222222222211 11 135678996 9999999999999999998775
Q ss_pred chHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhhcCCC
Q 000401 1010 NFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQKSP 1074 (1565)
Q Consensus 1010 ~f~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~~~~~~~~~~~~~~w~~i~~~~~ 1074 (1565)
.+..++|+.+..|+++++..++.+|.+||++++..++.+ |+++.|+.+.+.+.+++..++
T Consensus 1456 ---~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~--F~~~~W~~i~~~~~~lf~~T~ 1515 (1780)
T PLN03076 1456 ---PLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL--FSDEKWLEVVLSLKEAANATL 1515 (1780)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHHHhC
Confidence 356888999999999999999999999999999998765 569999999999998887543
No 3
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-91 Score=893.27 Aligned_cols=938 Identities=22% Similarity=0.355 Sum_probs=720.5
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHhcCCCCCcccCchHHHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCCcc-------
Q 000401 14 LSAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPS------- 86 (1565)
Q Consensus 14 L~~EskRK~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iaL~~lqkLis~~~i~~~------- 86 (1565)
|..-.+|+|+.++.+|+.+++++|+.. -.+...+.++.||.+||+||++|++..|++|+||||+|+.+...
T Consensus 11 ~~~~~~~~~s~l~~~~~~~~~~~~~~~--~~~~~~e~~~~p~~la~~t~~~ki~~~~~dc~~kli~~~~l~g~~~~~~~~ 88 (1514)
T KOG0929|consen 11 LADAEWRKHSKLKKACKSALEELKANG--LSLAEAELYLLPFELACDTKSPKIVSPALDCLQKLIAYGHLTGESNDSGGP 88 (1514)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhccc--CCCcchhhhhChHHhhcCCCCcchhccHHHHHHHHHHhhhccCCCCCCCCc
Confidence 334466799999999999999999832 33567889999999999999999999999999999999998642
Q ss_pred ---hHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCCccChHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHH
Q 000401 87 ---ALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVA 163 (1565)
Q Consensus 87 ---~l~~il~~l~~~~~~~de~vqLKILQ~L~~l~~s~~~~i~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~ 163 (1565)
.+..+++++|.|.+..||.+||+++++|++.|++..+.+||+.|..++++||++|.+| + ++++||++||.||+.
T Consensus 89 ~~~l~~~~~~~vc~~~~~~~e~~elq~~k~lL~av~s~~~~i~~~~ll~~vr~c~~iyl~s--~-~nq~~ak~~L~qml~ 165 (1514)
T KOG0929|consen 89 EDLLIDKIIEAVCKCFDGLDESVELQVLKALLAAVTSQHIEIHGDSLLLIVRTCYNIYLGS--P-INQTTAKATLTQMLN 165 (1514)
T ss_pred chhHHHHHHhHhhhccCCCchhhhHhHHHHHHHHHhccceeecCcchHHHHHHHHHHHhcC--c-ccchHHHHHHHHHHH
Confidence 4789999999999888999999999999999999889999999999999999999987 6 899999999999999
Q ss_pred HHHhhhhhcccCCCCCCC-CC-----CCcccccccc--------------CCccc-cc-CCC--Cc------cccccc--
Q 000401 164 LIFDHVVRAESLPMGKFG-SG-----AHITRTNSVT--------------GDVSR-SI-NHS--ES------LEHEFA-- 211 (1565)
Q Consensus 164 ~VF~rv~~~e~~~~~~~~-s~-----~~~~~~~~~~--------------~~~~~-~~-~~~--~~------~~~~~~-- 211 (1565)
.||.|+..+ .....+.. ++ .++..+..++ .++.. .. ++. +. .++...
T Consensus 166 ~vf~~~e~~-~~~~~~i~vs~~~~~~~~~~s~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1514)
T KOG0929|consen 166 IVFRRMEED-SSDESQILVSELLRVSDDPSSTEFVQQFIDSIMEVLVASPEDVGLTEMLDDNVNENSKTGDSLSLRDAES 244 (1514)
T ss_pred HHHHHhhhc-cCcccccccccccccCCCcchhHHHHHHHHHHHHhccCCccccccccccccccccccccCcccccCcccc
Confidence 999999862 11100000 00 0011000000 00000 00 000 00 000000
Q ss_pred -C--CC-Ccc-cccchhhhHHHHHHHHHHHHHhccCCCCCc---ccccch-hhHhhHHHHHHHHHcCccccccCHHHHHH
Q 000401 212 -S--EG-PSL-RRETLTKAGKLGLRLLEDLTALAAGGSASW---LHVNTL-QRTFVLDILEFILSNHVSLFRMLVSYEQV 282 (1565)
Q Consensus 212 -~--~~-~~~-~~~~~~~~~~da~~vf~dLc~L~~~e~p~~---l~~~~~-~k~~~LELiesiL~~~~~~F~~~pel~~l 282 (1565)
. ++ +.. .+..-....+||++||+.||+|+.+..+.- .+.+ + +|+++||||.++|+|+|++|.++.-|...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~Daflvfr~Lckls~k~~s~~~~d~~s~-~R~k~lsl~ll~~il~~~~~vf~s~~~fi~a 323 (1514)
T KOG0929|consen 245 PESESERDDDSERSSQNKLQRDAFLVFRALCKLSMKPLSSEESDTQSH-MRSKLLSLELLKSILENSGSVFRSNEHFIDA 323 (1514)
T ss_pred cccccccCcchhhccccHHHHhHHHHHHHHHHhhCCCCCCCCCChHHH-HhhhHHHHHHHHHHHhccchhhcCchhhHHH
Confidence 0 00 000 012224577999999999999998776632 2233 5 89999999999999999999999999999
Q ss_pred HHHHHH-HHHHHhhcccccCCCCCCcccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-cC-CCcHHHHHHHHHH
Q 000401 283 LRHQIC-SLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT-FL-DLPLWHRILVLEI 359 (1565)
Q Consensus 283 lr~~lc-~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~Lk~E~EvfLs~l~~~L-~~-~~~~w~r~L~LE~ 359 (1565)
+|+++| .+.- |+.+++ .++| ++++-||+.|+.+|+.++|.|+|||++.++..+ +. ..+.-|+..+|.+
T Consensus 324 ikqyKOGalsk-----n~vS~~---~~vf-e~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~s~~qk~~~l~~ 394 (1514)
T KOG0929|consen 324 IKQYLCLALSK-----NSVSNV---PMVF-ELSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTSSFQQKMMVLRI 394 (1514)
T ss_pred HHHHHHHHHhh-----cccccc---hHHH-HHHHHHHHHHHHhcccccccccccchhhhhhhhhhcCCCcccchhHHHHH
Confidence 999999 6653 332222 5788 589999999999999999999999999887654 43 3356788999999
Q ss_pred HHHHhcChHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhhcc--------ccc-----------------------c---
Q 000401 360 LRGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSV--------QFQ-----------------------E--- 405 (1565)
Q Consensus 360 l~~l~~dp~ll~~iy~nYD~~~~~~nI~~~li~~L~~~~~~~--------~~~-----------------------~--- 405 (1565)
+.++|.||+.++++|.||||+.+..|||+++++.+.+.+++. |++ +
T Consensus 395 ~~~ic~d~q~~Vdi~vnydcd~~~~nifer~v~~ltk~a~g~~~s~~~~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~ 474 (1514)
T KOG0929|consen 395 LTRICADPQTLVDIYVNYDCDSNSQNIFERLVNGLSKIAQGRTGSNLELSPVQELALRLKSLKCLVSILKSMSGWNDNQL 474 (1514)
T ss_pred HhhhcCCCccccccccCCccccCCccHHHHHHhhHHHhhcCCCccccCCCCchhhhHhhhhhhhHHHHHHhhhhhccccc
Confidence 999999999999999999999999999999999999999761 100 0
Q ss_pred --------------------Cc---------hhh---------HHhhhhcccCcc-ccchhcccc---------------
Q 000401 406 --------------------TS---------EES---------LSAVAGMFSSKA-KGIEWILDN--------------- 431 (1565)
Q Consensus 406 --------------------~s---------~e~---------l~~~~g~f~~k~-kGi~~ll~~--------------- 431 (1565)
.+ .+. ++.+...||.|+ +||+++..+
T Consensus 475 ~~~~~~t~~~~~~~~~~~~~~s~~~~~~~~~~~q~e~~k~ek~l~~~i~~fN~kpkkgi~~l~s~~~v~~sp~eiaeFL~ 554 (1514)
T KOG0929|consen 475 NVEGVITGKKSSTTPIENELNSDTQSNDADDPEQFEALKSEKQLQEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEFLI 554 (1514)
T ss_pred cCCCcccCccccCcchhhhccCccccccccChhhhhhhhhhcchHHHHHHhccCCccCchhhhhcCCCCCCHHHHHHHHH
Confidence 00 000 012345678776 488765321
Q ss_pred -----------------Cc---------------CCCcc-----------cCCchhhHHHHHHHHHHHH-----------
Q 000401 432 -----------------DA---------------SNAAV-----------LVASEAHSITLAIEGLLGV----------- 457 (1565)
Q Consensus 432 -----------------d~---------------~~~~~-----------ll~~Ea~~I~~~~e~~a~~----------- 457 (1565)
|+ .++++ .+|||+|+|||+|++||+-
T Consensus 555 ~t~~l~kt~igdyLGe~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFs 634 (1514)
T KOG0929|consen 555 GTEGLSKTILGDYLGEDDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFS 634 (1514)
T ss_pred hccCCCHHHHHHHhcCCcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 00 12221 3899999999999999972
Q ss_pred --------HhHhhhc--------------------ccccccCCC-CCC-----------------------CC----C--
Q 000401 458 --------VFTVATL--------------------TDEAVDVGE-LES-----------------------PR----C-- 479 (1565)
Q Consensus 458 --------i~sv~~l--------------------td~~~~~g~-~~~-----------------------p~----~-- 479 (1565)
+|++..| +++|+|+|. ++. |. .
T Consensus 635 sADtaYVLAfSlIMLnTDlHnp~vKnKMTK~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~ 714 (1514)
T KOG0929|consen 635 SADTAYVLAFSLIMLNTDLHNPNVKNKMTKADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNL 714 (1514)
T ss_pred CccchHHHHHHHHHHhccccCchhhccccHHHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCCcc
Confidence 1233222 234777775 320 00 0
Q ss_pred ------CC-CCC------------------Ccc---------CCCchHHHHHHHHHhhHHHHHHHHHHHhhcCCHHHHHH
Q 000401 480 ------DY-DPL------------------PKC---------MGETAVLCISMVDSLWLTILDALSLILSRSQGEAIILE 525 (1565)
Q Consensus 480 ------e~-~~~------------------~~~---------~~~~~~~~~~m~e~~W~~iLaalS~~l~~s~De~~~~~ 525 (1565)
+. .+. ++. +-.++.++++||+.+|.|.+||++..|..++|......
T Consensus 715 ~~~~~~~~~~~l~~~~r~~~~~~s~~~~~~~e~~s~~~s~~~~ath~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~ 794 (1514)
T KOG0929|consen 715 PKLLGLTGILNLRSNSRMSAIDMSASQSQLKEKGSLSESVFYSATHLISVRPMFESLWTPMLAAFSVGLQDSDDLEIANL 794 (1514)
T ss_pred hhhhccccccccchhhhhhHHHhhhhHHHHHHhcccccccceecccceeeeccccccccchhhhhchhhhcCCccccccc
Confidence 00 000 000 01245678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCCCCcccccccccCCCCCCccccccccCCccCChhHHHHHHHHHHH
Q 000401 526 ILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVDQKDNIVLTPKNVQALRTLFNI 605 (1565)
Q Consensus 526 ~L~gfq~~a~vag~l~L~~~rDafl~~L~k~t~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~KNi~~lraLl~l 605 (1565)
|++||+...|+++.++++..||||+++|.+||.++. + ..+..||+.++|+++.|
T Consensus 795 cl~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~------------~--------------~e~k~kNi~aik~l~~i 848 (1514)
T KOG0929|consen 795 CLDGFRLAISIASIFSMELGRDAFVQALARFTNLHA------------P--------------SEMKQKNIDAIKALLEI 848 (1514)
T ss_pred cccchhheeeehhhhcCCccccHHHHHHHHHHhccC------------H--------------HHHhHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999752 1 13889999999999999
Q ss_pred HHhhcccccccHHHHHHHHHHhHHhhcCCCCCccc-cc--------ccCcc--c-c-----c-cCCCcccchhHHHHhhH
Q 000401 606 AHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQE-VS--------TASSK--L-A-----R-ESSGQYSDFNVLSSLNS 667 (1565)
Q Consensus 606 A~~lG~~L~~SW~~IL~tlq~l~~~l~~p~~~~~~-~~--------~~~p~--~-~-----~-~~~~~~~d~~i~~s~~~ 667 (1565)
|+..||+|+.+|+.|+.|++++++++..+...+.. .. ...|+ . + + +..+.......+-++ +
T Consensus 849 a~t~gn~l~~sW~~Il~cisqlE~~qli~sg~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~e~~~~~~s~s~vi~~-d 927 (1514)
T KOG0929|consen 849 ADTDGNKLFDSWLDILKCISQLEHTQLIGSGSPPNKLPFVVSQREDYKKPGGSYDSSGDGSRIENVGEKSSVSVVIQM-D 927 (1514)
T ss_pred hhcccchhHhHHHHHHHHHHHHHHHHHhcCCCCcccCcchhhhchhccCCcccccccccccchhccccchhHHHHHHh-h
Confidence 99999999999999999999999995433221110 00 00110 0 0 0 000111123444455 8
Q ss_pred hhhhhcccCCHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCCCCCCceeehHHHhHHHHHhccccchhhHHHHH----HHH
Q 000401 668 QLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHRVEPLWDQVV----GHF 743 (1565)
Q Consensus 668 ~LFesS~~l~~~a~~~fi~ALc~lS~e~i~~~~~~~~~~~~~~~~~~~F~l~kl~eva~~N~~Ri~~~W~~i~----~hl 743 (1565)
++|++|..++.+++++|++|||.+|.+++..+. .| ++|+++|++||+++||.||+..|..++ +||
T Consensus 928 ~Ift~S~~l~~eaIv~FvkaLc~vs~~eL~s~~---------~P--rlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F 996 (1514)
T KOG0929|consen 928 RIFTSSQRLDSEAIVDFVKALCKVSMDELLSPS---------TP--RLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFF 996 (1514)
T ss_pred hhhcccccCCchHHHHHHHHHHHHHHHHhcCCC---------CC--CeeecccceeeeccccccchhhHHHHHHHhhhhh
Confidence 999999999999999999999999999987642 23 799999999999999999999888763 333
Q ss_pred H-------------------------------------------------------------hhccccccCCcHHHHHHH
Q 000401 744 L-------------------------------------------------------------ERCGEKLHYSWPSILELL 762 (1565)
Q Consensus 744 i-------------------------------------------------------------e~~g~~L~sgW~~If~iL 762 (1565)
. +-..+++++||+.||.|+
T Consensus 997 ~~vg~~~n~~vaifa~DslRQlsmkfle~~el~~f~Fq~~fl~Pfe~im~~s~s~~Irelv~rC~~~nikSGWk~if~i~ 1076 (1514)
T KOG0929|consen 997 VSVGCNSNESVAIFALDSLRQLSMKFLERSELDNFRFQKDFLRPFEHIMKRSSSAEIRELVVRCISSNIKSGWKNIFKIF 1076 (1514)
T ss_pred hccccCCCCceEEEehhhhHHhhhhhcchhhhhhhhHHHhhcCcchHHhhccCcchhHHHHHhhhhhhhhhhhhHHHHHH
Confidence 3 112347889999999999
Q ss_pred HHhhhccchhHHHHHHHHHHHHHhcCCCCCCc---chHHHHHHHHHHHHhcCCCcchhHHHHHHHHHhHHHHHcccCCCc
Q 000401 763 RSVADASEKDLITLGFQSLRFIMNDGLSSIPT---DCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGI 839 (1565)
Q Consensus 763 ~~~~~~~~~~lv~~aF~~L~lI~~dfL~~Lp~---~~~~~lV~~L~~F~~q~~dlNISLtAi~llW~isD~l~~~~~~~~ 839 (1565)
..++.+..+.+|..+|+.+..|..+++...-+ ++|.+||.|+.+|+.+....|+|+.||.++|.|+.++..+..
T Consensus 1077 ~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~--- 1153 (1514)
T KOG0929|consen 1077 TTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVY--- 1153 (1514)
T ss_pred HHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccc---
Confidence 99999999999999999999999998876444 899999999999999999999999999999999999886511
Q ss_pred chhhhhhhcccCCCccccCcchhhhhhcccccccCCCCCchhhhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhhc
Q 000401 840 SEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSH 919 (1565)
Q Consensus 840 ~~~k~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~ 919 (1565)
. ++.. .+. .+ ....|...|+|+|.++..++.|.|++||+.|++.+|.|+..|
T Consensus 1154 ~-~~~~------------~~~-------------~~--~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~ 1205 (1514)
T KOG0929|consen 1154 N-EKLK------------VGK-------------DS--EFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEH 1205 (1514)
T ss_pred h-hhcc------------ccc-------------cc--ccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhh
Confidence 0 0000 000 00 113478999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHhHHhhHHhhhhhcccCCcccccccccccCCCccchhhcccccchhhhhHH-HHHHHHHHHHHHHH
Q 000401 920 GQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGIARLL 998 (1565)
Q Consensus 920 g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~v~hsr~~~~k~W~-ET~vlaL~gl~~lf 998 (1565)
|+.|+.++|+.+|. ++||+|+.++..... ++..+|. +|+++||+.++.||
T Consensus 1206 g~~F~~~~We~v~~-~~fpIF~~~~~~~~~----------------------------~~~~eW~~tT~~~Al~~~v~lf 1256 (1514)
T KOG0929|consen 1206 GDDFSKEFWEDVFR-ILFPIFDNVKLDEDE----------------------------SEKDEWLSTTCNHALQALVDLF 1256 (1514)
T ss_pred hhhccHHHHHHHHH-heeecccccCcccch----------------------------hhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999642111 1223496 99999999999999
Q ss_pred hhhhcccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhhcCC
Q 000401 999 RSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQKS 1073 (1565)
Q Consensus 999 ~~~~~~L~~l~~f~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~~~~~~~~~~~~~~w~~i~~~~ 1073 (1565)
.+||+.+. .+...++..+..|+++++..++.++.+||.+++..++.. |+++.|+.+.+....++..+
T Consensus 1257 ~~~~~~l~------~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~--fse~~Wde~~~~~~e~~~~T 1323 (1514)
T KOG0929|consen 1257 TQFFKQLN------NLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEK--FSEEDWDEICNCILEAFKTT 1323 (1514)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccc--cCHhhHHHHHHHHHHHHHhc
Confidence 99999775 256778999999999999999999999999999987765 56899999998888777654
No 4
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-69 Score=676.95 Aligned_cols=947 Identities=20% Similarity=0.277 Sum_probs=657.1
Q ss_pred HHHHHHHHhcCCC-CCc--ccCchHHHHHHHHHhcCC--CchHHHHHHHHHHHHHccCCCCcc------hHHHHHHHHHh
Q 000401 29 AEHAILKLRSLSS-PSE--LAQSEDILRIFLMACEVR--TVKLSVIGLSCIQKLISHDAVAPS------ALKEIFSMLKN 97 (1565)
Q Consensus 29 ~e~al~~Lk~~~~-~~~--l~~~~~~l~Pfllac~sk--~~kl~~iaL~~lqkLis~~~i~~~------~l~~il~~l~~ 97 (1565)
--+++..||..-+ ..+ ..++..||+||+..+.|. +|++|++||++++|++++++|+++ +++.+++++++
T Consensus 45 ll~~f~~Lr~~ln~~~~l~~idp~~~L~PFL~vI~s~~~~g~iTslALssv~Kflt~~iid~~s~n~~~am~~~v~Avth 124 (1386)
T KOG0928|consen 45 LLSSFKQLREVLNSLASLDTIDPLTYLSPFLEVIKSDETTGPITSLALSSVLKFLTLNIIDESSPNAADAMRNIVDAVTH 124 (1386)
T ss_pred HHHHHHHHHHHhhchhhhccCChHhHHhHHHHHHhcccCCccHHHHHHHHHHHHheeeecCccCccHHHHHHHHHHHHHh
Confidence 3445555554311 112 356789999999999988 799999999999999999999975 68899999999
Q ss_pred c----cC-CCCchHHHHHHHHHHHHHcCC-CCccChHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHHHHHhhhhh
Q 000401 98 H----AD-MVDESVQLKTLQTILIIFQSR-LHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAVALIFDHVVR 171 (1565)
Q Consensus 98 ~----~~-~~de~vqLKILQ~L~~l~~s~-~~~i~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~~VF~rv~~ 171 (1565)
| ++ .+||.|.|||||+|.+++.++ +..+.++.+.+++++||++.+.++-++++|++|++||..|+..||.|+++
T Consensus 125 cRFe~td~~Sde~VllkilqvLr~lm~sp~~~lLSnq~Ic~ivqTcl~v~~q~~lselLr~~Ae~Tm~~~~~~IFsrLk~ 204 (1386)
T KOG0928|consen 125 CRFEGTDPASDEVVLLKILQVLRSLMDSPAGALLSNQIICDIVQTCLRVVCQSRLSELLRKSAEHTMHDLTQLIFSRLKY 204 (1386)
T ss_pred eeeeccCccchhHHHHHHHHHHHHHHhCchhhhcchhHHHHHHHHHHHHHHHHhHHHHhhcchhhhHHHHHHHHHHhCcc
Confidence 9 33 479999999999999999997 45568999999999999998866555699999999999999999999998
Q ss_pred cccCCC-------CCC-CC--CCCccccccc-cCCccc--ccCCCC----cccccccCCC-----Cc--c--------cc
Q 000401 172 AESLPM-------GKF-GS--GAHITRTNSV-TGDVSR--SINHSE----SLEHEFASEG-----PS--L--------RR 219 (1565)
Q Consensus 172 ~e~~~~-------~~~-~s--~~~~~~~~~~-~~~~~~--~~~~~~----~~~~~~~~~~-----~~--~--------~~ 219 (1565)
.++... +.. +. ......+..+ .++++. +....+ ....++.... +. + ..
T Consensus 205 ~~~~~~~~~~~~~es~~~~~~~~~~i~~k~~en~e~~~~~~~a~~~~~~~~~~~~~~v~~~~~~~~~~~e~a~~~~~~~~ 284 (1386)
T KOG0928|consen 205 IEPPYVNEMYINDESYQGNVLKDDFIGTKRVENGEISSEDESATFDDGSISEKFEVPVQQVDREQETDEENAEAMAAMDE 284 (1386)
T ss_pred ccccccchhhcchHhhhcccccccccCcccCCCCCccCcccccccccccccccccCCccccccccCChhhhhhHhhcccc
Confidence 652110 000 00 0000000000 000000 000000 0000000000 00 0 01
Q ss_pred cchhhhHHHHHHHHHHHHHhccCCCCCcccccchhhHhhHHHHHHHHHcCccccccCHHHHHHHHHHHHHHHHHhhcccc
Q 000401 220 ETLTKAGKLGLRLLEDLTALAAGGSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNV 299 (1565)
Q Consensus 220 ~~~~~~~~da~~vf~dLc~L~~~e~p~~l~~~~~~k~~~LELiesiL~~~~~~F~~~pel~~llr~~lc~lLi~~ls~n~ 299 (1565)
.+.-|..+| .|.-||.|++..++ ..+.+..+.|+|.||++.++-.|+.|+.||.|..++++.++..++.++...+
T Consensus 285 ~ygip~~~~---~~h~l~sl~~~~n~--~~~~es~~~~~l~lin~aie~~g~~i~~~prll~liqd~~fk~l~~~~~~~~ 359 (1386)
T KOG0928|consen 285 NYGIPVMKD---IFHFLLSLLNVTNT--VAHDESVRSFALVLINSAIELGGDCIREHPRLLRLIQDPLFKHLIEFLQIPT 359 (1386)
T ss_pred cCCCceecc---chhhhhhhcccccc--ccchhhhhHHHHHHHHhhHhhcchHHHHhhHHHHHhccHHHHHHHHHHhhcc
Confidence 111233333 67779999988776 4567779999999999999999999999999999999999988878774311
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc---cCCCcHHHHHHHHHHHHHHhcChHHHHHHHHh
Q 000401 300 ENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT---FLDLPLWHRILVLEILRGFCVEARTLRLLFQN 376 (1565)
Q Consensus 300 ~~~~~~~~~~F~~~~lRi~~~Li~~~~~~Lk~E~EvfLs~l~~~L---~~~~~~w~r~L~LE~l~~l~~dp~ll~~iy~n 376 (1565)
.. + -.+.+.++...++..+...++.+++.+.|.|++.+..+. +...|..+|+++||.+-.+|+.|.|+.++|.|
T Consensus 360 k~--s-~~~~~Lql~~s~vl~l~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~e~yvN 436 (1386)
T KOG0928|consen 360 KM--S-LERLVLQLFCSLVLNLYLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLTEMYVN 436 (1386)
T ss_pred cc--h-hhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 00 0 012222344444455555577888999999999887765 22336778899999999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHHHHhh-------c--ccc-----------------c--cCch------h-------------
Q 000401 377 FDMNPKNTNVVEGMVKALARVVS-------S--VQF-----------------Q--ETSE------E------------- 409 (1565)
Q Consensus 377 YD~~~~~~nI~~~li~~L~~~~~-------~--~~~-----------------~--~~s~------e------------- 409 (1565)
|||+.++.|||+++++.|+|.+- + ++. + +..+ +
T Consensus 437 fDCd~~csnlfedl~k~LtknafP~sg~~tt~~i~~l~l~~v~~l~e~~~~~l~~~d~~ef~~~k~e~~v~~iR~rk~K~ 516 (1386)
T KOG0928|consen 437 FDCDLYCSNLFEDLIKLLTKNAFPVSGPLTTASILPLDLEGVLGLAENMIDELQDSDREEFWTDKCEVWVLFIRSRKRKR 516 (1386)
T ss_pred cCCchhhhhhHHHHHHHHHHccCCcccccccccccchHHHHHHHHHHHHHhhccccCcCccccCCcchhhhhhccchhhH
Confidence 99999999999999999999651 1 110 0 0000 0
Q ss_pred hHHhhhhcccCcc-ccchhcccc-------Cc-------------------------C---------------CCc----
Q 000401 410 SLSAVAGMFSSKA-KGIEWILDN-------DA-------------------------S---------------NAA---- 437 (1565)
Q Consensus 410 ~l~~~~g~f~~k~-kGi~~ll~~-------d~-------------------------~---------------~~~---- 437 (1565)
-+.-++..||.+| |||+|+..+ || . ++.
T Consensus 517 ~li~gae~FNe~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~~~vLn~Fi~tFdF~gmrlDeA 596 (1386)
T KOG0928|consen 517 ELILGAELFNEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPKNVSVLNEFIGTFDFQGMRLDEA 596 (1386)
T ss_pred HHHHHHHHhccChhhHHHHHHhcCccCCCCChHHHHHHHHhCccccHHHHHHHhcCcchHHHHHHHHHhcCcCCCcHHHH
Confidence 0123577899987 599876321 21 1 111
Q ss_pred -------ccCCchhhHHHHHHHHHHHHH-----------------hHhhh--c-ccc-------------------cccC
Q 000401 438 -------VLVASEAHSITLAIEGLLGVV-----------------FTVAT--L-TDE-------------------AVDV 471 (1565)
Q Consensus 438 -------~ll~~Ea~~I~~~~e~~a~~i-----------------~sv~~--l-td~-------------------~~~~ 471 (1565)
.++|||+|+|.|++|.|++.. ++++. | ||+ |+|+
T Consensus 597 LRl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNlrg~n~ 676 (1386)
T KOG0928|consen 597 LRLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNLRGING 676 (1386)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCccccccchhhhhhhhhheecccccChhhhccCCHHHHhhhcccccC
Confidence 139999999999999998732 22222 2 332 6888
Q ss_pred CCCCCCC-----------------CCCCCCCccC----------C----------CchHHHHHHHHHhhHHHHHHHHHHH
Q 000401 472 GELESPR-----------------CDYDPLPKCM----------G----------ETAVLCISMVDSLWLTILDALSLIL 514 (1565)
Q Consensus 472 g~~~~p~-----------------~e~~~~~~~~----------~----------~~~~~~~~m~e~~W~~iLaalS~~l 514 (1565)
|+...+. .++.+..+.. + ....+++.||..+|+|+.||++++|
T Consensus 677 g~DFpreyLseiY~SIk~~EIvmPee~hG~~~~~~~~W~~L~~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaals~vF 756 (1386)
T KOG0928|consen 677 GKDFPREYLSEIYQSIKTNEIVMPEEHHGTEEMFEYRWINLISRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAALSYVF 756 (1386)
T ss_pred CCCCCHHHHHHHHHHHhhcceecccccCCchhhhHHHHHHHHhcccccCceeeccchhhhhHHHHHHHccchHHHHHHHh
Confidence 8532110 1222221110 0 1235789999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCCCCcccccccccCCCCCCccccccccCCccCChh
Q 000401 515 SRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQSPGSKRSESLVDQKDNIVLTPK 594 (1565)
Q Consensus 515 ~~s~De~~~~~~L~gfq~~a~vag~l~L~~~rDafl~~L~k~t~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~K 594 (1565)
+.+.+++++++|+.||++|+.+++.+|+.++.|..+..|||||.+.+... +| +..+ ....=+.|
T Consensus 757 d~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~--------~~-----eel~---~~fged~k 820 (1386)
T KOG0928|consen 757 DVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSS--------TP-----EELV---LAFGEDTK 820 (1386)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCcc--------Cc-----hHHH---HHhcccch
Confidence 99999999999999999999999999999999999999999999752210 00 0000 11334779
Q ss_pred HHHHHHHHHHHHHhhcccccccHHHHHHHHHHhHHhhcCCCCCc------------ccccccCcc--cc--ccCCCc---
Q 000401 595 NVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATT------------QEVSTASSK--LA--RESSGQ--- 655 (1565)
Q Consensus 595 Ni~~lraLl~lA~~lG~~L~~SW~~IL~tlq~l~~~l~~p~~~~------------~~~~~~~p~--~~--~~~~~~--- 655 (1565)
...+.+|++-+|+..|+.++.+|+.|++++.++.+....|.... +..+.+.+. .. +.+++.
T Consensus 821 a~~At~tvf~~~n~~Gd~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~ss~Lls~ 900 (1386)
T KOG0928|consen 821 ARMATLTVFFGANKFGDLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNEPELLKLNKLPVPQQEISINKPRKSSGLLSR 900 (1386)
T ss_pred hHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcCccccccCCCCCCccccCcccccccchHHHH
Confidence 99999999999999999999999999999999988766553310 000000000 00 111110
Q ss_pred ---------------cc--c-------hhHHHHh-hHhhhhhcccCCHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCCCC
Q 000401 656 ---------------YS--D-------FNVLSSL-NSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQK 710 (1565)
Q Consensus 656 ---------------~~--d-------~~i~~s~-~~~LFesS~~l~~~a~~~fi~ALc~lS~e~i~~~~~~~~~~~~~~ 710 (1565)
.+ + +.++++. .+++|+.|+.+..+++.+++++|...+... + ...
T Consensus 901 fs~~Ls~d~e~~~~~Ptee~l~~~~~a~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~-s----------~~d 969 (1386)
T KOG0928|consen 901 FSSYLSGDEEEERPCPTEEELSASKKALECIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDL-S----------MED 969 (1386)
T ss_pred HHHhcCCcccccCCCCcHHHHhhhHHHhhHHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCc-c----------Ccc
Confidence 01 1 1233332 467999999999999999999999998764 1 123
Q ss_pred CCceeehHHHhHHHHHhccccchhhHHHHHHHHH----------------------------------------------
Q 000401 711 IGSISFSVERMISILVNNLHRVEPLWDQVVGHFL---------------------------------------------- 744 (1565)
Q Consensus 711 ~~~~~F~l~kl~eva~~N~~Ri~~~W~~i~~hli---------------------------------------------- 744 (1565)
+.+..|+++.++.|.+.|.+|+..+|..+.+|++
T Consensus 970 e~s~~F~lElli~I~l~nrdri~l~w~~~~e~ll~~~~~~~~~~~~lvek~v~gl~rv~~rll~yk~~l~d~l~~sl~~l 1049 (1386)
T KOG0928|consen 970 EESAVFCLELLIAITLSNRDRILLSWFAVYEHLLGLLIQTLMGSPLLVEKAVSGLLRVVNRLLPYKEFLSDELLDSLRIL 1049 (1386)
T ss_pred cchHHHHHHHHHHHHhccccceEeeehhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHH
Confidence 4557999999999999999999999999988887
Q ss_pred -------------------------hhccccccCCcHHHHHHHHHhhhccchhHHHHHHHHHHHHHhcCCCCCCcchHHH
Q 000401 745 -------------------------ERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHE 799 (1565)
Q Consensus 745 -------------------------e~~g~~L~sgW~~If~iL~~~~~~~~~~lv~~aF~~L~lI~~dfL~~Lp~~~~~~ 799 (1565)
+......+.||.++|..+..++. +++.-..+|..+-..+.|-.+ ++++.|..
T Consensus 1050 l~L~~ki~d~~~~ki~i~~~~lv~~n~~~v~~~~~w~~~~slL~~~~~--h~~a~~~~~~~~l~~m~e~~h-l~~~~fe~ 1126 (1386)
T KOG0928|consen 1050 LKLDPKILDAFLDKIAIFVSKLVKANAANVHSKDGWALLFSLLELTAR--HPEADFLKFYRLLSKMSEASH-LTPDNFEL 1126 (1386)
T ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhc--CCchhHHHHHHHHHHhhcccc-CChHHHHH
Confidence 01111236899999999999886 445555666666555666654 45577999
Q ss_pred HHHHHHHHHhcCC-CcchhHHHHHHHHHhHHHHHcccCCCcchhhhhhhcccCCCccccCcchhhhhhcccccccCCCCC
Q 000401 800 CVDVTGAYSSQKT-ELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIG 878 (1565)
Q Consensus 800 lV~~L~~F~~q~~-dlNISLtAi~llW~isD~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 878 (1565)
||+|...|+.... ...-+++..+..-.-+..+.+. ..+-|.. ..++. .....
T Consensus 1127 ~v~~~~~fve~~~~~~~~~l~~lde~s~sg~~~~kw----~~~~~~~----------~~~~~-------------~~~~~ 1179 (1386)
T KOG0928|consen 1127 YVDCGSTFVEARVGQIMRSLSLLDEMSSSGEVLDKW----EIEAKNA----------TESGD-------------ESKKS 1179 (1386)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhcccccchhHH----HHHHhhh----------hcccc-------------ccccc
Confidence 9999999988741 1111111111111000011100 0000000 00000 00011
Q ss_pred chhhhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHhHHhhHHhhhhhcccCCccccccc
Q 000401 879 MVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGK 958 (1565)
Q Consensus 879 ~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~~~~~~ 958 (1565)
......+|+++++.+.++|.|.|.+|||.|++.|+|++.+.++.|.+..|..||..|+||+++.+.......+.
T Consensus 1180 ~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr~~~~~~q~l~~~~~~~Cf~~vlfpll~~l~~~l~~~~~------ 1253 (1386)
T KOG0928|consen 1180 NNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQRIIGALDQGLAHSYWNPCFDLVLFPLLTDLLELLSDASE------ 1253 (1386)
T ss_pred chhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhHHHHHHHHHHhccccc------
Confidence 12234599999999999999999999999999999998888999999999999999999999999754322110
Q ss_pred ccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHhCCc-----hHH
Q 000401 959 ELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGS-----KEV 1033 (1565)
Q Consensus 959 ~~~~~~~~~~~~~v~hsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~l~~f~~~W~~LL~~l~~~~~~~~-----~el 1033 (1565)
-+ ..+.+|++++.+.++++|.+|+..+...+.|..+|..+|+++++++..+. ..+
T Consensus 1254 ------------------~~--~~me~t~~~~~~Ll~k~~L~~lq~ls~~~~f~~Lwl~~ld~m~~l~~~~~~e~~~~~l 1313 (1386)
T KOG0928|consen 1254 ------------------KG--NEMEVTLLLATKLLSKVFLQELQDLSSLSMFSTLWLGVLDRMEKLMRGKTSEETSDKL 1313 (1386)
T ss_pred ------------------cc--chHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhH
Confidence 00 14679999999999999999999999999999999999999999997554 459
Q ss_pred HHHHHHHHHHHHHhhcCCCCCC-------hHHHHHHHHHH
Q 000401 1034 SLAAINCLQTTVLSHSTKGNLP-------VAYLNSVLDVY 1066 (1565)
Q Consensus 1034 s~a~~~~L~~lL~~~~~~~~~~-------~~~~~~~~~~w 1066 (1565)
..++.+.+++++..|...+.+. ...|+..|.-.
T Consensus 1314 ~e~~pe~l~~~~~~m~~~ei~~~~~~~~~~~~w~~tw~~~ 1353 (1386)
T KOG0928|consen 1314 NEIVPELLKNMLLVMKLQEIILDKDEIGKDSLWEITWERL 1353 (1386)
T ss_pred HhhhhhhhhhhhhhhhccccccCcccccccchHHHHHHHH
Confidence 9999999999999998665432 23666555433
No 5
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=99.95 E-value=3.9e-28 Score=261.95 Aligned_cols=156 Identities=32% Similarity=0.507 Sum_probs=141.5
Q ss_pred hhHHHHHHHHHHHHHhc-----cCCCCCcccccchhhHhhHHHHHHHHHcCccccc---cCHHHHHHHHHHHHHHHHHhh
Q 000401 224 KAGKLGLRLLEDLTALA-----AGGSASWLHVNTLQRTFVLDILEFILSNHVSLFR---MLVSYEQVLRHQICSLLMTSL 295 (1565)
Q Consensus 224 ~~~~da~~vf~dLc~L~-----~~e~p~~l~~~~~~k~~~LELiesiL~~~~~~F~---~~pel~~llr~~lc~lLi~~l 295 (1565)
.+.+||++||++||+|+ .+++|.|++.+..+|.+|||||+++|+++|+.|. .||+|.+++|+++|+.+++++
T Consensus 3 ~~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~ 82 (168)
T PF12783_consen 3 YYVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNL 82 (168)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999 5666888888888999999999999999999999 666999999999999998888
Q ss_pred cccccCCCCCCcccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hccCCC-cHHHHHHHHHHHHHHhcChHHHHHH
Q 000401 296 RTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVK-VTFLDL-PLWHRILVLEILRGFCVEARTLRLL 373 (1565)
Q Consensus 296 s~n~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~Lk~E~EvfLs~l~~-~L~~~~-~~w~r~L~LE~l~~l~~dp~ll~~i 373 (1565)
.++ +.+.| ++++|+|++++.+|+++||.|+|+|++.+++ ++++++ |.|||+++||+++++|++|++++++
T Consensus 83 ~~~-------~~~i~-~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~l 154 (168)
T PF12783_consen 83 SSS-------DFPIF-SRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDL 154 (168)
T ss_pred hhh-------hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHH
Confidence 752 24566 4799999999999999999999999999888 677766 6899999999999999999999999
Q ss_pred HHhcCCCCCCchHH
Q 000401 374 FQNFDMNPKNTNVV 387 (1565)
Q Consensus 374 y~nYD~~~~~~nI~ 387 (1565)
|.||||+.+++|||
T Consensus 155 f~NYDCd~~~~nif 168 (168)
T PF12783_consen 155 FVNYDCDLNSKNIF 168 (168)
T ss_pred HHHcCCCCCCCCCC
Confidence 99999999999986
No 6
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=99.58 E-value=1.5e-13 Score=178.77 Aligned_cols=664 Identities=17% Similarity=0.175 Sum_probs=382.3
Q ss_pred hhHhhHHHHHHHHHcCccccccCHHHHHHHHHHHH-HHHHHhhcccccCCCCCCcccHHHHHHHHHHHHHHHHHHhhHHH
Q 000401 254 QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQIC-SLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITE 332 (1565)
Q Consensus 254 ~k~~~LELiesiL~~~~~~F~~~pel~~llr~~lc-~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~Lk~E 332 (1565)
++..+|+++.++|..+. .|..+++.+.| .+.....+. -.|+|. ..+.+++..+..+....+.|
T Consensus 27 ~~l~~l~~~~~~l~~~~-------~l~~~~~~~~~l~~~~~a~s~--------~~~v~~-v~~~i~~~~~~~~~~~f~~~ 90 (1024)
T COG5307 27 SKLYSLPVSYSILRDFK-------LLLDLLFPYLRLKLSLSARSP--------LLPVFE-VGLEIIGLRLSNLPKLFKLE 90 (1024)
T ss_pred cccccccchHHHhccch-------HHHHHhcchhhhhhhhccccc--------chhhhh-hhHHHHHHHHhhhhhhhhhc
Confidence 78888888888887665 88899999999 333222221 246774 78999999999999999999
Q ss_pred HHHHHHHHHHhc-cCCC-cHHHHHHHHHHHHHHhcChHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHhhccc-------
Q 000401 333 CEVFLSMLVKVT-FLDL-PLWHRILVLEILRGFCVEARTLRLLFQNFDMNPK-NTNVVEGMVKALARVVSSVQ------- 402 (1565)
Q Consensus 333 ~EvfLs~l~~~L-~~~~-~~w~r~L~LE~l~~l~~dp~ll~~iy~nYD~~~~-~~nI~~~li~~L~~~~~~~~------- 402 (1565)
.++|+..++..+ +..+ +.-|+.+-|-..+.+|..|+ ++.|.+|||... ..|+.++....+.+.+++.+
T Consensus 91 ~~~~f~s~~f~i~~~~~~s~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~~~~s~~~t~~p~~~~~~~ 168 (1024)
T COG5307 91 SSVFFISIYFPISHTTSTSLQQKSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTAFPLSRPSTNDPPETRSLI 168 (1024)
T ss_pred cchHHHHHhhhhhcccccchhhhhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccCCccccccccCCCcchhhh
Confidence 999988766654 5443 45677888889999999999 899999999977 77777777766665543211
Q ss_pred ------------c---------c---------------------------------cCchh-------------------
Q 000401 403 ------------F---------Q---------------------------------ETSEE------------------- 409 (1565)
Q Consensus 403 ------------~---------~---------------------------------~~s~e------------------- 409 (1565)
. + ..+.|
T Consensus 169 ~e~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~~sl~~s~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~d 248 (1024)
T COG5307 169 IEQLSILWISSPYFFLTLISDFQCDLDSSDCSISFLKGLTKNSLVPSAYYTNKDVPPLSGEGLVSGSKSMVNSMKNSSRD 248 (1024)
T ss_pred hhhhhhcCCCCCccccccccchhhhhHHHHHHHHHHHHHhhcccchhhhhcccCCCCcccchhhhcCCcccccccccccC
Confidence 0 0 00000
Q ss_pred ---------hH------------HhhhhcccCcc-ccchhcccc---------------------------------C--
Q 000401 410 ---------SL------------SAVAGMFSSKA-KGIEWILDN---------------------------------D-- 432 (1565)
Q Consensus 410 ---------~l------------~~~~g~f~~k~-kGi~~ll~~---------------------------------d-- 432 (1565)
.+ .-.+..||.|+ +||..+.+. |
T Consensus 249 ~~s~~~~~~~~~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~~d~~~sia~~L~~~~~~l~k~~lg~~L~~~~~ 328 (1024)
T COG5307 249 SSSFVNSDSSIVNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFIDSDSHKSIAEILEGTEGRLDKKKLGLYLGTDDD 328 (1024)
T ss_pred hhhhccchHHHhhhccccchHHHHHHHHHhhhcCcccchhhcccccCCcccchHHHHHHHhccCcccHHHHHHHhcCCch
Confidence 00 00234566655 366543221 0
Q ss_pred --------------cCCCcc-----------cCCchhhHHHHHHHHHHHHH-------------------hHhhhc-ccc
Q 000401 433 --------------ASNAAV-----------LVASEAHSITLAIEGLLGVV-------------------FTVATL-TDE 467 (1565)
Q Consensus 433 --------------~~~~~~-----------ll~~Ea~~I~~~~e~~a~~i-------------------~sv~~l-td~ 467 (1565)
..++++ .+|||+|+|+|++|+|+... |++..| ||.
T Consensus 329 kn~~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~~~~D~vyiLafSlimLNTDl 408 (1024)
T COG5307 329 KNNAVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKPDSVYILAFSLIMLNTDL 408 (1024)
T ss_pred hHHHHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCcccccCccceeehhHHHHHHHhccc
Confidence 012221 28999999999999999622 222222 332
Q ss_pred -------------------cccCCC-CC-------------CCC---CCCCCCCc-----------------cCCCc--h
Q 000401 468 -------------------AVDVGE-LE-------------SPR---CDYDPLPK-----------------CMGET--A 492 (1565)
Q Consensus 468 -------------------~~~~g~-~~-------------~p~---~e~~~~~~-----------------~~~~~--~ 492 (1565)
|.|.|. ++ .|- .++..... ..++. .
T Consensus 409 HNp~iK~kMT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~~~~~~~~~~~~~~~ss~~~~~~~~rd~~~ 488 (1024)
T COG5307 409 HNPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHHSSETSPEDNWPSLDSSFTNIAEFGRDNQR 488 (1024)
T ss_pred cChhhhccccHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhcccccccccccchhhhhhhhhhhhccccccc
Confidence 455553 21 000 00000000 00011 1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCCCC-cccccccc
Q 000401 493 VLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNE-SDRRSAVL 571 (1565)
Q Consensus 493 ~~~~~m~e~~W~~iLaalS~~l~~s~De~~~~~~L~gfq~~a~vag~l~L~~~rDafl~~L~k~t~~~~~~-~~~~~~~~ 571 (1565)
..-+.+|+..|+.+++++...++...++-+....+.+.+++..+|..|+++.|||+|+.++++++.++... ++....
T Consensus 489 ~~~~~~f~~v~~~~et~~~~i~~s~s~~~~~s~~~~si~~~~~ia~~f~~n~p~~~~~~~~s~~t~l~~~S~~~~~~~-- 566 (1024)
T COG5307 489 VADATHFDHVGPIFETSLFPILMSASDDLYSSDGVVSISKCTRIAANFDFNDPRDAFLESLSEFTTLINSSVSEGPYL-- 566 (1024)
T ss_pred chhHhhhhhcchHHHHHHHHHHhhhcchhcccccchHhhcccchhhcceecchhHHHHHHhhccCCccccCccccccc--
Confidence 12336666666666666677777666666666778888888889999999999999999999999976432 111000
Q ss_pred cCCCCCC--ccccccccCCccCChhHHHHHHHHHHHHHhhcc--cc-cccHHHHHHHHHHhHHhhcCCCCCcccccccCc
Q 000401 572 QSPGSKR--SESLVDQKDNIVLTPKNVQALRTLFNIAHRLHN--VL-GPSWVLVLETLAALDRAIHSPHATTQEVSTASS 646 (1565)
Q Consensus 572 ~~~g~~~--~~~~~~~~~~~~l~~KNi~~lraLl~lA~~lG~--~L-~~SW~~IL~tlq~l~~~l~~p~~~~~~~~~~~p 646 (1565)
..+.... ..+..+......-.-++..+.-.++.+....|+ .+ ...|..+=..-..+........... ..|
T Consensus 567 ~~~~~d~~~~is~~~~~~~i~~~~~~ql~~v~~~~~~~k~~~~~i~~s~~~~~i~~~~~~~~~~~l~~~~~~-----~~~ 641 (1024)
T COG5307 567 FIPSEDSLLSISVLELAARIGRGFEDQLSDVKLFRLRSKSGNKEILSSSLLSNIENKSLKLYLSSLIEDGKH-----FSP 641 (1024)
T ss_pred cCccccccchhhHHHHHHHhcccchhhcchhHHhHHhhccccccccchhhhhhhhhhHhhhhhhhhcCCCcc-----ccc
Confidence 0000000 000000001122334888888888888877776 34 3478777665544443322111000 001
Q ss_pred cccccCCCcccchhHHHHhhHhhhhhcccCCH-HHHHHHHHHHHHhhhhhhcCCCCCCCCCCCCCCCceeehHHHhHHHH
Q 000401 647 KLARESSGQYSDFNVLSSLNSQLFESSALMHI-SAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISIL 725 (1565)
Q Consensus 647 ~~~~~~~~~~~d~~i~~s~~~~LFesS~~l~~-~a~~~fi~ALc~lS~e~i~~~~~~~~~~~~~~~~~~~F~l~kl~eva 725 (1565)
...+.-.. .-+.-..++++...+.++. .++..++++++.... +. . ++++.+++.
T Consensus 642 ~~~~~~~~-----~~~~~~~~~i~~~~s~~s~~~~~l~~~k~~~~~d~-----------------~~--~-~~q~~v~~s 696 (1024)
T COG5307 642 SIVKKLGS-----PELPKLNPDISSGKSKLSVWSAVLSVFKAILSSDL-----------------PS--P-PLQKEVDIS 696 (1024)
T ss_pred cccccccC-----ccccccCcccccccccccccchHHHHHHHHHhccC-----------------CC--C-CcHHhhhHH
Confidence 11100000 0011122577878888888 889999999988111 00 1 678999999
Q ss_pred Hhccccchh---hHHHHH-------HHHH---------------------------------------------------
Q 000401 726 VNNLHRVEP---LWDQVV-------GHFL--------------------------------------------------- 744 (1565)
Q Consensus 726 ~~N~~Ri~~---~W~~i~-------~hli--------------------------------------------------- 744 (1565)
..||.+++. +|..+. .++.
T Consensus 697 ~~n~~~i~~~~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~~q~s~~f~~iee~~~~~f~~~~~~~~~~~~~~~~~~~v~~ 776 (1024)
T COG5307 697 KKNVDIIKSESKISNVLFKNSEGLSPDLNKTLLESALDSKSQLSSRFLEIEELSDFGFQIALLLPFEYSVEVSLVVAVKE 776 (1024)
T ss_pred hhhhhhhhhhhHHHhhcccchhhccccccccchhcccchhhhhccccCChhhhcchhHHHHHhccccccccccceeeeee
Confidence 999998865 455421 1111
Q ss_pred ----------hhccccccCCcHHHHHHHHHhhhccchhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcCCCc
Q 000401 745 ----------ERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTEL 814 (1565)
Q Consensus 745 ----------e~~g~~L~sgW~~If~iL~~~~~~~~~~lv~~aF~~L~lI~~dfL~~Lp~~~~~~lV~~L~~F~~q~~dl 814 (1565)
.+....+.+| +++|+++...... . -++..+..+.. .|. -.-+.++|...+-+-......+.++
T Consensus 777 ~~~~~~~~~~~~~~s~~~s~-~~i~~~~~~~~~~--~-~~~~~~s~~~~--~e~-v~s~~n~f~~~~~~~~~~~~~~~~~ 849 (1024)
T COG5307 777 LVIGCSDNLLTEAASSIASG-KTIFEISAYEDLS--S-TLRYILSSLSN--DEL-VLSQENLFIELLSSKNEGKQNDKNL 849 (1024)
T ss_pred eehhhHHHHHHHHHHhhhcc-ccceeeeeccccc--c-hhhhHHHHhcc--hhh-hhChhhHHHHHHhhhHHHHHhccch
Confidence 0000111222 2222222221110 0 01222222111 111 1222356666666666666666666
Q ss_pred chhHHHHHHHHHhHHHHHcccCCCcchhhhhhhcccCCCccccCcchhhhhhcccccccCCCCCchhhhhhHHHHHHHHH
Q 000401 815 NISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLK 894 (1565)
Q Consensus 815 NISLtAi~llW~isD~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~ 894 (1565)
-+.+.++.++..+.-....+ . ... + .. ... ....+.|+++|.++.
T Consensus 850 ~~~~~~~~~~~~~~~~~~~w-k-----~~~------------------~-~~---------~~~-~~~~~~~~~~l~~~~ 894 (1024)
T COG5307 850 ELRLHSVDYLRFLLPNVENW-K-----NLS------------------S-VL---------SAN-SNFSKDIFSYLEKYV 894 (1024)
T ss_pred hhhhccHHHHHHHhHHHHHH-H-----HHH------------------H-HH---------Hhh-hhhhHHHHHHHHHHH
Confidence 66666666555443333221 0 000 0 00 000 112578999999999
Q ss_pred hhcc-CCcHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHhHHhhHHhhhhhcccCCcccccccccccCCCccchhhcc
Q 000401 895 KLGA-DERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIH 973 (1565)
Q Consensus 895 ~L~~-D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~v~ 973 (1565)
++.. -.-.|+ |..+..+++.+..++|+.+.+.-++|++....-.... +. ++
T Consensus 895 ~i~~~~~~l~~--------f~~~l~~~d~~~~~~~e~i~~~~~~~~~~~~~~~~~~---------~~---------~~-- 946 (1024)
T COG5307 895 KIGSSALDLEN--------FDQLLSLLDDFMSAFWEKISKKESFYIKSGASGPNSD---------KT---------NL-- 946 (1024)
T ss_pred HhchhhhhHHH--------HHHHHHhhhHHHHHHHHHHhhhhhheeccccccCccc---------cc---------cc--
Confidence 8664 466666 8899999999999999999999999998866421111 00 00
Q ss_pred cccchhhhhHH-HHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 000401 974 HSRNTAQKQWD-ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVL 1046 (1565)
Q Consensus 974 hsr~~~~k~W~-ET~vlaL~gl~~lf~~~~~~L~~l~~f~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~ 1046 (1565)
-++...-.|. .+.+.++...+.+|...|+.+.. ..| .+.+...| .+.-.++...+++++++.+-
T Consensus 947 -~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~-----~~~--~~~l~~~c-~~~~~~~~~~~~~~~~~~~~ 1011 (1024)
T COG5307 947 -DNDEIELVWASTDLLAALKEFIELFNSIFEKLEI-----LAG--KLILLHQC-LNNCDQLGLGAIETLEEILW 1011 (1024)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH--HHHHHHhh-cCcHhhhhhhhHHHHhhhhH
Confidence 1233445776 88889999999999999987652 233 45666666 34445677778888777653
No 7
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.4e-06 Score=112.95 Aligned_cols=470 Identities=16% Similarity=0.112 Sum_probs=289.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhhcCCC----------C-------------------------
Q 000401 1009 SNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKG----------N------------------------- 1053 (1565)
Q Consensus 1009 ~~f~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~----------~------------------------- 1053 (1565)
..|.++|+.-|+++..-...++.+|..+|-++++.+........ +
T Consensus 9 ~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s~ds~vlet~~edf~~PfllaC~sr~tRl~~ials~iQ 88 (1610)
T KOG1848|consen 9 MSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSASRDSDVLETPNEDFLVPFLLACISRNTRLFVIALSCIQ 88 (1610)
T ss_pred HHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhccccccccccccCCcccccceeeecccCcccceeeHHHHHH
Confidence 35667899999999999999999999999999988876542110 0
Q ss_pred -------CC---------hHHHHHHHHHHHHhhcCCCCCCC-------CCCccchHHHHHHHHHHHHHHHhcCC--HHHH
Q 000401 1054 -------LP---------VAYLNSVLDVYEYALQKSPNYSD-------NAAGKVKQEILHGLGELYVQAQKMFD--DRMY 1108 (1565)
Q Consensus 1054 -------~~---------~~~~~~~~~~w~~i~~~~~~~~~-------~~~~~~~q~~l~~f~~ly~~~~~~~~--~~~~ 1108 (1565)
++ ...|..+|.-|.++--..+.|-- ...+.+..-++.||+-+|++.+..++ ...+
T Consensus 89 kL~~~dsleps~~aeildn~L~a~~qae~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~~knkvV~NaAaAtl 168 (1610)
T KOG1848|consen 89 KLGRHDSLEPSVTAEILDNNLWAAAQAEWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLYQKNKVVFNAAAATL 168 (1610)
T ss_pred HHhccCCCCCcccHHHHHHHHHHHHHHHHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHcCCCcceechhHHHH
Confidence 11 24677777777654321111110 11233445667999999996555554 3555
Q ss_pred HHHHHHHHHHHHcccCCCCCCccccC-----CCCHHHHHHHHhccccCC----Cc-cchhhHHHHHHHHHccCCCCCCcC
Q 000401 1109 GQLLAIIDLAVRQTMITHDNYEIEFG-----HVPPVLRTILEILPLLSP----TE-QLCSMWLVLLREILQYLPRSDSPL 1178 (1565)
Q Consensus 1109 ~~~l~~l~~~~~~~~~~~~~~~~d~~-----~~s~lQ~~vl~~l~~i~~----~~-~~~~~~~~~~~~l~~f~~~~~~~~ 1178 (1565)
+|+.. ..|-+.|+. .+.++...+ +.++.|.+.+..+.-+.. .- .++.++|....++|.|++..+.++
T Consensus 169 rQlV~--~vFdrv~ie-s~~~d~~l~sl~~~s~t~sl~aa~~~~~~l~~dI~~~~~~i~l~~~~~~~~~L~~Iee~~~s~ 245 (1610)
T KOG1848|consen 169 RQLVL--LVFDRVPIE-SDAFDFILPSLTEASGTSSLEAALTALDPLQKDICVGFENIQLMYPAIFDQLLAFIEESTKSP 245 (1610)
T ss_pred HHHHH--HHHHhcccc-cccccccchhhhccCCccchhhcccccchHHHhHhcchHHHHHhcccccHhHHhcchhccccc
Confidence 55443 344444432 221222221 234444444443332221 11 346677788888888886554433
Q ss_pred CCCCCCCCCCCCCCCcccccc--ccccCCCCCCCCCCcchhhhhhcccCCccccchhHH-HHHhHhHHHHHHhhh---cc
Q 000401 1179 QKKEDEEEPPSTSDNIHDVHV--RTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHL-FAEKLIPVVVDLFLK---AP 1252 (1565)
Q Consensus 1179 ~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~a~s~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~---~p 1252 (1565)
...- ....+. +.++.-++++. +.+++ ..+++ |.+.+....|+++.. .+
T Consensus 246 ~~el-----------Lesilks~~s~~dq~qdf~--~a~ll-------------~~~~~Py~~Rl~~~sv~~i~~l~~~e 299 (1610)
T KOG1848|consen 246 GLEL-----------LESILKSNASKSDQIQDFA--PAELL-------------ALNVVPYAERLLLRSVDLIQKLACHE 299 (1610)
T ss_pred hhhh-----------hhhhhhcchhhhHHHHHhh--HHHHH-------------HhhhHHHHHHHHHHHHHHHHHHhccH
Confidence 2110 000110 00000000000 00000 00111 555555555554433 46
Q ss_pred hhhhcchhHHHHHhhcc-------ccccCCCCCCCccHHHHHHHHHHHHHhhhhhHhhhhcccccCChHHHHhhHHHHHH
Q 000401 1253 AVEKCIIFPEIIQNLGR-------CMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARLRVWKEVAD 1325 (1565)
Q Consensus 1253 ~~~~~~~~~~ii~~~~~-------~~~~k~~~~~~~~Wk~At~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~W~~v~~ 1325 (1565)
.+.+...+-.+|+.+.. |-..+|-|+..-.|+++....+.+...++|....-. .--.+..+|....-
T Consensus 300 a~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la------~~lk~~s~~~~~~p 373 (1610)
T KOG1848|consen 300 AVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLA------SLLKFDSMDLELWP 373 (1610)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHH------HHhhhhhcCcccCc
Confidence 66666666677777666 999999999999999999999999999998855533 12446778888777
Q ss_pred HHhhHhcccCCCCCCCCCCChhhccccchhhchHHHHHhhhhccCCCCCCChHHhH----hhHHHhhhccCCCCCCCccc
Q 000401 1326 VYEIFLVGYCGRALPSNSLSAVALSGADESLEMSILDILGDKILKSPIDAPFDVLQ----RLISTIDRCASRTCSLPVET 1401 (1565)
Q Consensus 1326 ~~~~~l~~~~~~~~~~~~~~~~~~~~~dE~~d~~~~~~l~~~il~~~~~~p~~~~~----~l~~l~~~~~~r~~~~~~~t 1401 (1565)
-+..|.+... .++.+.++-.+. +.+.++..+.+.+-..++|..+-++..++. .+...++.++.-.|...+..
T Consensus 374 ~~l~~~~~~s---iv~k~dsi~~~t-rn~diktk~thlldk~~~plan~vy~~lv~ti~nsi~e~l~k~s~esg~~eFt~ 449 (1610)
T KOG1848|consen 374 RFLDFLFLKS---IVPKNDSIQIFT-RNFDIKTKVTHLLDKEILPLANFVYKELVGTISNSIQEMLNKSSIESGGSEFTS 449 (1610)
T ss_pred cHhHHHhhcc---CCCCchhhHHHH-hhcccCcchHHHHhhcccccchhHHHHHHHhhhHHHHHHHHHhHHhhcCccchh
Confidence 7888887763 234555555566 667778889999999999988888877665 55666666654334222111
Q ss_pred cccCccchhhhHHHHHHHHHhhhcCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhccCCCCCChhHHHHHHH
Q 000401 1402 VELMPAHCSKFSLACLHKLFSLSSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIF 1481 (1565)
Q Consensus 1402 ~~~~p~~r~r~s~~c~d~Lf~l~s~~~~~~~~~~~~~~~a~~a~p~Ll~Rc~~~L~~yi~Dq~l~G~~P~P~~r~~El~~ 1481 (1565)
-+.--..|+.+...|+..|-++...+. ...++.....+++...+..|.+.+.+.|..|+.+.|++|.|+...-|+++
T Consensus 450 k~k~Ie~~~dnds~stavl~~l~~~~~---~li~e~~~ss~~avSt~~~~a~~v~~l~~~~~~~s~k~~l~~~~kLe~i~ 526 (1610)
T KOG1848|consen 450 KEKGIELREDNDSMSTAVLLQLSFSNK---VLIPEGLYSSRMAVSTLLKRAQDVLHLYIEDEVLSNKCPLPRQTKLEIIF 526 (1610)
T ss_pred hhcCceeeccCchHHHHHHHHHHhhhh---hhccccchhhhHHHHHHHHHHHHHHHHhhhhhhhccCCccccceeehhHH
Confidence 111122357788889988877766322 22345666788999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCcccccCCCCCcccccccccCcCCCcccchhhhhhhhhh
Q 000401 1482 ILQELARLKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCE 1530 (1565)
Q Consensus 1482 vL~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~~ 1530 (1565)
+- .+..++.-. ..+|+..+...+...+.+++-.||.+..
T Consensus 527 ~a----~~snq~til------dalks~l~~st~e~is~qvl~s~stlts 565 (1610)
T KOG1848|consen 527 DA----VLSNQSTIL------DALKSTLPESTDEIISAQVLASYSTLTS 565 (1610)
T ss_pred HH----HhhccccHH------HHhhhhccccccchhhHHHHhchHHHHh
Confidence 65 333333111 1223333335667789999999999984
No 8
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.40 E-value=0.0032 Score=88.51 Aligned_cols=533 Identities=14% Similarity=0.150 Sum_probs=268.5
Q ss_pred hhhhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhhccCCCChhHHHHHHH-HhHHhhHHhhhhhcccCCccccccc
Q 000401 880 VDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLW-NYVFPMLDCASHMAATSSKDEWQGK 958 (1565)
Q Consensus 880 ~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~~~-~VLFPLl~~l~~~~~~~s~~~~~~~ 958 (1565)
..|..+|-.+-.-+..++.++-.+||--|+..|=++-..+... .+.++.=|. +.|-|+..-+.+.
T Consensus 1129 l~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~--eEL~~f~FQkefLkPfe~im~~s------------ 1194 (1780)
T PLN03076 1129 LVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLER--EELANYNFQNEFMKPFVIVMRKS------------ 1194 (1780)
T ss_pred eehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcch--hhhhchhHHHHHHHHHHHHHHhc------------
Confidence 3588999777777888877766899999999875554333211 112222233 4455655444311
Q ss_pred ccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHhCCchHHHHHHH
Q 000401 959 ELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAI 1038 (1565)
Q Consensus 959 ~~~~~~~~~~~~~v~hsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~l~~f~~~W~~LL~~l~~~~~~~~~els~a~~ 1038 (1565)
.+. |.+-++++.+..+...+.+.+. ..|..++..|...+..+...+...|+
T Consensus 1195 -----------------~~~------eVrE~ILeCv~qmI~s~~~nIk------SGWktIF~VLs~aa~d~~e~iV~lAF 1245 (1780)
T PLN03076 1195 -----------------NAV------EIRELIIRCVSQMVLSRVNNVK------SGWKSMFMVFTTAAYDDHKNIVLLAF 1245 (1780)
T ss_pred -----------------Cch------HHHHHHHHHHHHHHHHHHhhhh------cCcHHHHHHHHHHHhCccHHHHHHHH
Confidence 111 4556777778888777777665 37999999999888888889999999
Q ss_pred HHHHHHHHhhcC-CCCCChHHHHHHHHHHHHhhcCCCCCCCCCCccchH--HHH-HHHHHHHHHH-----H---------
Q 000401 1039 NCLQTTVLSHST-KGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQ--EIL-HGLGELYVQA-----Q--------- 1100 (1565)
Q Consensus 1039 ~~L~~lL~~~~~-~~~~~~~~~~~~~~~w~~i~~~~~~~~~~~~~~~~q--~~l-~~f~~ly~~~-----~--------- 1100 (1565)
+.++.++..... ....+.+....+.+........... .+.+.+ +++ .+-..+.+.. .
T Consensus 1246 etl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~-----~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~ 1320 (1780)
T PLN03076 1246 EIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFN-----KDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPS 1320 (1780)
T ss_pred HHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCc-----ccccHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 999887754321 0001122333333333222211000 000000 001 0101111000 0
Q ss_pred ------------hc-CC-HHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhc-cccCC-Cccc-hhhHHHH
Q 000401 1101 ------------KM-FD-DRMYGQLLAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEIL-PLLSP-TEQL-CSMWLVL 1163 (1565)
Q Consensus 1101 ------------~~-~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~d~~~~s~lQ~~vl~~l-~~i~~-~~~~-~~~~~~~ 1163 (1565)
.. .+ .+...=++-+|..+..... | - =..+++..++.| +.+.. .... +..|-.+
T Consensus 1321 ~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~---D-~------RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~i 1390 (1780)
T PLN03076 1321 SPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSF---D-P------RPEIRKSALQVLFDTLRNHGHLFSLPLWERV 1390 (1780)
T ss_pred cccccccccccccccccchhHHHHHHHHHHHHHHHhc---C-C------cHHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 00 00 1112224444444443211 1 1 123455555443 22211 1112 3467677
Q ss_pred HHHHH----ccCCCCCCcCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCcchhhhhhcccCCccccchhHHHHHh
Q 000401 1164 LREIL----QYLPRSDSPLQKKEDEEEPPSTSDNIHDVHVRTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEK 1239 (1565)
Q Consensus 1164 ~~~l~----~f~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~a~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1239 (1565)
+..++ +.+.....+...++.... ++.......+.-.|. .. ..-.
T Consensus 1391 f~~VLFPIFd~l~~~~~~~~~~~~~~~-------------------~~~~~~~~~e~~~Wl----------~e---T~~~ 1438 (1780)
T PLN03076 1391 FESVLFPIFDYVRHAIDPSGGDEPEGQ-------------------GVDGDQGELDQDAWL----------YE---TCTL 1438 (1780)
T ss_pred HHHHHHHHHHHHHHhhccccccccccc-------------------cccccccchhhhhHH----------HH---HHHH
Confidence 77643 111100000000000000 000000000111111 11 2334
Q ss_pred HhHHHHHHhhhcchhhhcchhHHHHHhhccccccCCCCCCCccHHHHHHHHHHHHHhhhhhHhhhhcccccCChHHHHhh
Q 000401 1240 LIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTRRDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQDMKISRPARLRV 1319 (1565)
Q Consensus 1240 ~~~~~~~l~~~~p~~~~~~~~~~ii~~~~~~~~~k~~~~~~~~Wk~At~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 1319 (1565)
++.-+++||.++=....+ .+++++.-|.-|+..- ..++=|..++|+.+.+....+. .+ +.-
T Consensus 1439 AL~~lvdLft~fFd~L~~-~L~~~l~ll~~ci~q~----n~~la~ig~~~l~~li~~ng~~----------F~----~~~ 1499 (1780)
T PLN03076 1439 ALQLVVDLFVKFYPTVNP-LLKKVLMLLVSFIKRP----HQSLAGIGIAAFVRLMSNAGHL----------FS----DEK 1499 (1780)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCc----hHHHHHHHHHHHHHHHHHhhcc----------CC----HHH
Confidence 455567776664333333 5588888888787654 7888899999988888755433 22 345
Q ss_pred HHHHHHHHhhHhcccCCC--CCCC-CCCChhhccccch--------------------hh------chH-HHH-----Hh
Q 000401 1320 WKEVADVYEIFLVGYCGR--ALPS-NSLSAVALSGADE--------------------SL------EMS-ILD-----IL 1364 (1565)
Q Consensus 1320 W~~v~~~~~~~l~~~~~~--~~~~-~~~~~~~~~~~dE--------------------~~------d~~-~~~-----~l 1364 (1565)
|..|++.+....-..--. ..|. ...+.+...+.+. .+ -|. ++. .+
T Consensus 1500 W~~i~~~~~~lf~~T~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~kc~~v~QLllI~~~ 1579 (1780)
T PLN03076 1500 WLEVVLSLKEAANATLPDFSYVVSGEYMPAENIQDSENAEAASSSTADNDAEAERSRRLYAAISDAKCRAAVQLLLIQAV 1579 (1780)
T ss_pred HHHHHHHHHHHHHHhCCchhhcccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999988876542100 0000 0000000000000 00 010 111 11
Q ss_pred hhhccCCCCCCChHHhHhhHHHhhhccC----------------CCCCCCccccccCccchhhhHHH-HHHHHHhhhcCC
Q 000401 1365 GDKILKSPIDAPFDVLQRLISTIDRCAS----------------RTCSLPVETVELMPAHCSKFSLA-CLHKLFSLSSSD 1427 (1565)
Q Consensus 1365 ~~~il~~~~~~p~~~~~~l~~l~~~~~~----------------r~~~~~~~t~~~~p~~r~r~s~~-c~d~Lf~l~s~~ 1427 (1565)
.+..=.+...+|..-+.+|.++|...-. |.|... +-.+|.-.+-|.=||. |+..||.+-..+
T Consensus 1580 ~~l~~~~~~~l~~~~l~~l~~~L~~s~~fA~~fN~d~~lR~~l~~~g~~~-~~~~PnLLkqE~~s~~~~l~il~~~~~d~ 1658 (1780)
T PLN03076 1580 MEIYNMYRPRLSAKNTLVLFDALHTVASHAHKINSDTALRSKLQELGSMT-QMQDPPLLRLENESYQICLTFLQNLILDK 1658 (1780)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcc-cCCCCchhhHhHHHHHHHHHHHHHHhcCC
Confidence 1110012456777666677666642110 222110 0012333445667776 799999998743
Q ss_pred CcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchh------------ccCCCCCChhHHHH-------HHHHHHHHhh
Q 000401 1428 NEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDEN------------DLGERNFPAARLEE-------IIFILQELAR 1488 (1565)
Q Consensus 1428 ~~~~~~~~~~~~~a~~a~p~Ll~Rc~~~L~~yi~Dq~------------l~G~~P~P~~r~~E-------l~~vL~~l~~ 1488 (1565)
+.. ..+.. +--.|+.=|+.+|+.|+.=.. -+=.+|+-..+++| +..||+++.+
T Consensus 1659 ~~~----~~~~~----~~~~l~~~c~~il~~y~~l~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~~~ 1730 (1780)
T PLN03076 1659 PPL----AKEAE----VESRLVELCEEVLQFYIETSTAGQDSEDSSSQQPRWLIPLGSGKRRELAARAPLVVATLQAVCG 1730 (1780)
T ss_pred Ccc----chHHH----HHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccchhHHHHHhcchHHHHHHHHHhc
Confidence 211 12222 445588889999999964221 01134655667777 5677777754
Q ss_pred cccCcccccCCCCCcccccccccCcCCCcccchhhhhhhhhhheec--chhHHHHHHHHHHH-HHhhh
Q 000401 1489 LKIHPDTASALPLHPVLKSGLAMDENSDKRPHLLVLFPSFCELVIS--REARVRELVQVLLR-LITKE 1553 (1565)
Q Consensus 1489 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~~lyp~l~~~v~~--~~~~v~~ll~~~l~-~vg~e 1553 (1565)
|-. .+.++|+-.+||++|+++.+ ...+++.+|+.+|. .||-.
T Consensus 1731 l~~-----------------------~~f~~~~~~~y~l~~~l~~~e~~~~e~r~~l~~~~~~rvg~~ 1775 (1780)
T PLN03076 1731 LGD-----------------------SSFEKNLVRFFPLLAGLISCEHGSNEVQVALSDMLSSWVGPV 1775 (1780)
T ss_pred CCH-----------------------HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhh
Confidence 422 34699999999999999965 45899999999999 78863
No 9
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=97.84 E-value=1.1e-05 Score=76.94 Aligned_cols=46 Identities=28% Similarity=0.617 Sum_probs=42.5
Q ss_pred HHHHHHhhccccccCCcHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 000401 739 VVGHFLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI 784 (1565)
Q Consensus 739 i~~hlie~~g~~L~sgW~~If~iL~~~~~~~~~~lv~~aF~~L~lI 784 (1565)
...++++++|++|++||++||++|+.++.+.++++|+.||+++++|
T Consensus 41 ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 41 CILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred HHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Confidence 4567779999999999999999999999988999999999999976
No 10
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.12 Score=65.29 Aligned_cols=368 Identities=15% Similarity=0.215 Sum_probs=197.0
Q ss_pred HhhHhhhhh-cccCCHHHHHHHHHHHHHhhhhhhcCCCC--------CCC-CCCCCCCCceeehHHHhHHHHHhc---cc
Q 000401 664 SLNSQLFES-SALMHISAVKSLLSALHQLSHQCMIGTSS--------SFG-PTSSQKIGSISFSVERMISILVNN---LH 730 (1565)
Q Consensus 664 s~~~~LFes-S~~l~~~a~~~fi~ALc~lS~e~i~~~~~--------~~~-~~~~~~~~~~~F~l~kl~eva~~N---~~ 730 (1565)
+-.+|+|+. +..|.--|+.+|.-|+...|...+-.+-. .++ ..+.+ .+-...-+.|+.+-...- ..
T Consensus 848 akaDRffedacdeLcLmALgdfcvaiikaSenqlFhsvTaqkdihLaaPgevkstq-drksalhLfRigdaiirilrhka 926 (1777)
T KOG1846|consen 848 AKADRFFEDACDELCLMALGDFCVAIIKASENQLFHSVTAQKDIHLAAPGEVKSTQ-DRKSALHLFRIGDAIIRILRHKA 926 (1777)
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHhhhcceeeeeccceeeEeecCcccccch-hhHHHHHHHHHHHHHHHHHHhcc
Confidence 335899984 56788899999999999998765422110 000 11111 110123345555421111 11
Q ss_pred c----chhhHHHHHHHHH--------------------------------------------------------------
Q 000401 731 R----VEPLWDQVVGHFL-------------------------------------------------------------- 744 (1565)
Q Consensus 731 R----i~~~W~~i~~hli-------------------------------------------------------------- 744 (1565)
| ....|+.+..||+
T Consensus 927 RPLlHqMfcwpLVaaHfVeasaCdkErhvSqiAaSaiadilTelLtdwnEpPgfhFNeaLfgPFeramclElCdEdtkdQ 1006 (1777)
T KOG1846|consen 927 RPLLHQMFCWPLVAAHFVEASACDKERHVSQIAASAIADILTELLTDWNEPPGFHFNEALFGPFERAMCLELCDEDTKDQ 1006 (1777)
T ss_pred cchhHHHHHHhhhhHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCcchhHhhhchHHHHHHHHhccHHHHHH
Confidence 3 2567999999987
Q ss_pred ---------hhccccccCCcHHHHHHHHHhhhccch----hHH---------HHHHHHHHHHHhcCCCCCC--cchHHHH
Q 000401 745 ---------ERCGEKLHYSWPSILELLRSVADASEK----DLI---------TLGFQSLRFIMNDGLSSIP--TDCIHEC 800 (1565)
Q Consensus 745 ---------e~~g~~L~sgW~~If~iL~~~~~~~~~----~lv---------~~aF~~L~lI~~dfL~~Lp--~~~~~~l 800 (1565)
|.+++.|.+||+..|+-|.+|...+.. .++ --+|++++--.+ ..++| .+....|
T Consensus 1007 flsSigeLVescadkIgSGWkPLFgaLeaVgggnksemkaaldedysmgKghacafDVfeafLn--iDnipVfanaalec 1084 (1777)
T KOG1846|consen 1007 FLSSIGELVESCADKIGSGWKPLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDVFEAFLN--IDNIPVFANAALEC 1084 (1777)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHHHHHHhc--cCchHhHHHHHHHH
Confidence 567778999999999999999753211 111 136776654433 12333 3567899
Q ss_pred HHHHHHHHhcCCC-----------------cchhHHHHHHHHHhHHHHHccc--CCCcch--hhhhhhcccCCCccccCc
Q 000401 801 VDVTGAYSSQKTE-----------------LNISLTAVGLLWTTTDFIAKGL--VHGISE--EKEAANQDLCSVPKQMDG 859 (1565)
Q Consensus 801 V~~L~~F~~q~~d-----------------lNISLtAi~llW~isD~l~~~~--~~~~~~--~k~~~~~~~~~~~~~~~~ 859 (1565)
|-|+.+|...-.+ ....|.|..++.+|+..+..-. .++..- -...+-.........++.
T Consensus 1085 imClmkflkgleevDckeigdcapapgapstdKOGaALdlLpncsqLiakiYkmPhkPifhlghladLprkcldqsamde 1164 (1777)
T KOG1846|consen 1085 IMCLMKFLKGLEEVDCKEIGDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYKMPHKPIFHLGHLADLPRKCLDQSAMDE 1164 (1777)
T ss_pred HHHHHHHHhcccccccchhcccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHcCCCchhhhhhhhhcchHHHHhhhhccc
Confidence 9999999886542 2355789999999987766421 110000 000000000000000000
Q ss_pred chhhhhhcccccccCCCCCchhhhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhhcc-CCCChhHHHHHHHHhHHh
Q 000401 860 EKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG-QKLSESMWEDCLWNYVFP 938 (1565)
Q Consensus 860 ~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g-~~ls~~~W~~~~~~VLFP 938 (1565)
.-.|..-..++-. +.........++|+.++..+..-....-|.-...-+..+|+.|..-. .-|.+.+=-.|+..++.|
T Consensus 1165 DgIEsphgpfpvl-edfdddiagiElfiiflEQicaallncppnhQknlLDlifeLLrDiskkPlGadfGgvamsaliLP 1243 (1777)
T KOG1846|consen 1165 DGIESPHGPFPVL-EDFDDDIAGIELFIIFLEQICAALLNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVAMSALILP 1243 (1777)
T ss_pred CCccCCCCCcccc-ccccccchhHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccCCCCCCCccchhhHHHHH
Confidence 0001100000000 00111123458998888888775556556666677888888886422 223333334677888888
Q ss_pred hHHhhhhhcccCCcccccccccccCCCccchhhcccccchhhhhHH---HHHHHHHHHHHHHHhhhhcccccccchHH--
Q 000401 939 MLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD---ETLVLVLGGIARLLRSFFPFLANLSNFWT-- 1013 (1565)
Q Consensus 939 Ll~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~v~hsr~~~~k~W~---ET~vlaL~gl~~lf~~~~~~L~~l~~f~~-- 1013 (1565)
.+..-.... +.+..-|+ .-...+++.-+.+...|.+.... +.+..
T Consensus 1244 vmqkWiRRl-----------------------------dkdesywdmakaifKhaIGaccelVidhielekh-SswddRl 1293 (1777)
T KOG1846|consen 1244 VMQKWIRRL-----------------------------DKDESYWDMAKAIFKHAIGACCELVIDHIELEKH-SSWDDRL 1293 (1777)
T ss_pred HHHHHHHHh-----------------------------chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-chHHHHH
Confidence 887654210 11224564 24457888888888888765442 22211
Q ss_pred ------HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH
Q 000401 1014 ------GWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYE 1067 (1565)
Q Consensus 1014 ------~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~~~~~~~~~~~~~~w~ 1067 (1565)
+.....++...|..-.-..+..++-+|.+-+|... .+.|+++.|..+.....
T Consensus 1294 erdIcalikdcfefdkaCaaaPaefiliagcsciryvlvta--gpkFseemWniaccaLa 1351 (1777)
T KOG1846|consen 1294 ERDICALIKDCFEFDKACAAAPAEFILIAGCSCIRYVLVTA--GPKFSEEMWNIACCALA 1351 (1777)
T ss_pred HHHHHHHHHHHHHHHHHHhhCcHHHHHHhhcchheeeeecc--CccccHHHHHHHHHHHH
Confidence 12222233333333333445666666666665443 34578899987665443
No 11
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.70 E-value=0.55 Score=52.84 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=17.8
Q ss_pred cCCchhhHHHHHHHHHHHHH
Q 000401 439 LVASEAHSITLAIEGLLGVV 458 (1565)
Q Consensus 439 ll~~Ea~~I~~~~e~~a~~i 458 (1565)
++|||+|+|+|+||.||...
T Consensus 152 RLPGEaQKIdRmmEaFA~rY 171 (395)
T KOG0930|consen 152 RLPGEAQKIDRMMEAFAQRY 171 (395)
T ss_pred cCCchHHHHHHHHHHHHHHH
Confidence 38999999999999999753
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=78.98 E-value=1.5e+02 Score=38.17 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHH-hcCCCCCcccCchHHHHHHHHHhcCCCchHHHHHHHHHHHHHccCCC
Q 000401 5 AVLESDLRALSAEARRRYPAVKDGAEHAILKL-RSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAV 83 (1565)
Q Consensus 5 ~~L~~dL~~L~~EskRK~~~lk~A~e~al~~L-k~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iaL~~lqkLis~~~i 83 (1565)
+.+..++..+.. -++|.||.+|=-++.++ +..+ +..+.. ++.++......++..+...|+.++..+ ..-
T Consensus 113 ~~l~~~v~~ll~---~~~~~VRk~A~~~l~~i~~~~p---~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i---~~~ 182 (526)
T PF01602_consen 113 EPLIPDVIKLLS---DPSPYVRKKAALALLKIYRKDP---DLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI---KCN 182 (526)
T ss_dssp HHHHHHHHHHHH---SSSHHHHHHHHHHHHHHHHHCH---CCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH---HCT
T ss_pred hHHHHHHHHHhc---CCchHHHHHHHHHHHHHhccCH---HHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH---ccC
Confidence 344444544444 35778887665554444 3321 122223 677777788888888888888888888 211
Q ss_pred Cc---chHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcC
Q 000401 84 AP---SALKEIFSMLKNHADMVDESVQLKTLQTILIIFQS 120 (1565)
Q Consensus 84 ~~---~~l~~il~~l~~~~~~~de~vqLKILQ~L~~l~~s 120 (1565)
++ ..++.+++.|+......++-+|.++++++..+...
T Consensus 183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~ 222 (526)
T PF01602_consen 183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM 222 (526)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS
T ss_pred cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC
Confidence 21 45666777777654455667888888887765543
No 13
>PTZ00429 beta-adaptin; Provisional
Probab=76.60 E-value=2.9e+02 Score=37.41 Aligned_cols=127 Identities=14% Similarity=0.209 Sum_probs=73.8
Q ss_pred hHhhHHHHHHHHHcCccccccCHHHHHHHHHHHHHHHHHhhcccccCCCCCCcccHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000401 255 RTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECE 334 (1565)
Q Consensus 255 k~~~LELiesiL~~~~~~F~~~pel~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~Lk~E~E 334 (1565)
-...|+-+..++.-.... .|++...+-.++-+.++.++++ .+...-+++|-+..++..+-..+..++.
T Consensus 270 ~AVVl~Aik~il~l~~~~---~~~~~~~~~~rl~~pLv~L~ss---------~~eiqyvaLr~I~~i~~~~P~lf~~~~~ 337 (746)
T PTZ00429 270 PAVVMGAIKVVANLASRC---SQELIERCTVRVNTALLTLSRR---------DAETQYIVCKNIHALLVIFPNLLRTNLD 337 (746)
T ss_pred HHHHHHHHHHHHHhcCcC---CHHHHHHHHHHHHHHHHHhhCC---------CccHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 345566666655443322 3555544444555444455442 2332114788778888888777777666
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHhcCh---HHHHHHHHhcCCCCCCchHHHHHHHHHHHHhhcc
Q 000401 335 VFLSMLVKVTFLDLPLWHRILVLEILRGFCVEA---RTLRLLFQNFDMNPKNTNVVEGMVKALARVVSSV 401 (1565)
Q Consensus 335 vfLs~l~~~L~~~~~~w~r~L~LE~l~~l~~dp---~ll~~iy~nYD~~~~~~nI~~~li~~L~~~~~~~ 401 (1565)
+|+-. .+-|...|...||++-.++.+. .++.++.. |=.+. ..++-+..|.++++++...
T Consensus 338 ~Ff~~------~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~e-Ya~d~-D~ef~r~aIrAIg~lA~k~ 399 (746)
T PTZ00429 338 SFYVR------YSDPPFVKLEKLRLLLKLVTPSVAPEILKELAE-YASGV-DMVFVVEVVRAIASLAIKV 399 (746)
T ss_pred hhhcc------cCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHH-HhhcC-CHHHHHHHHHHHHHHHHhC
Confidence 65522 2236678999999999998664 34445443 32222 2356677777777766443
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=76.31 E-value=1.9e+02 Score=37.18 Aligned_cols=100 Identities=12% Similarity=0.158 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCCcchHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCCccChHHH
Q 000401 51 ILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNM 130 (1565)
Q Consensus 51 ~l~Pfllac~sk~~kl~~iaL~~lqkLis~~~i~~~~l~~il~~l~~~~~~~de~vqLKILQ~L~~l~~s~~~~i~g~~L 130 (1565)
....+.--+.++|..+.+.||.+|-++. +++.++.++..+..+..-....|.=|-+-++..++..+...+...
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-- 152 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-- 152 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--
Confidence 5566777778889999999999999976 455556666666655433345788888888888887643332222
Q ss_pred HHHHHHhhhcccccCChHHHHHHHHHHHHHH
Q 000401 131 AQALGICLRLLENNRSSDSVRNTAAATFRQA 161 (1565)
Q Consensus 131 ~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Ql 161 (1565)
.+..+.++. ..+++ .|...|-..+.++
T Consensus 153 --~~~~l~~lL-~d~~~-~V~~~a~~~l~~i 179 (526)
T PF01602_consen 153 --LIPKLKQLL-SDKDP-SVVSAALSLLSEI 179 (526)
T ss_dssp --HHHHHHHHT-THSSH-HHHHHHHHHHHHH
T ss_pred --HHHHHhhhc-cCCcc-hhHHHHHHHHHHH
Confidence 244444553 45566 7777777777776
No 15
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=72.70 E-value=6.3 Score=29.98 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=22.6
Q ss_pred HHHHHhhccCCcHHHHHHHHHHHHHHHh
Q 000401 890 FSLLKKLGADERPEVRNSAIRTLFQTLG 917 (1565)
Q Consensus 890 L~~L~~L~~D~R~EVRn~AiqTLfril~ 917 (1565)
+-.+.++..|+-++||..|+++|-++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4556788889999999999999988764
No 16
>PTZ00429 beta-adaptin; Provisional
Probab=69.28 E-value=4.1e+02 Score=35.98 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHH
Q 000401 308 PYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEILRGF 363 (1565)
Q Consensus 308 ~~F~~~~lRi~~~Li~~~~~~Lk~E~EvfLs~l~~~L~~~~~~w~r~L~LE~l~~l 363 (1565)
..|.+.++|.+-.|..+|-. -.+-.+..|+.+++.....+. + ++.+++.|
T Consensus 382 ~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~~~~v~-e-~i~vik~I 431 (746)
T PTZ00429 382 MVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRRPELLP-Q-VVTAAKDI 431 (746)
T ss_pred HHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCchhHH-H-HHHHHHHH
Confidence 46766677777777776643 344556666666654333343 2 34555544
No 17
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=67.37 E-value=79 Score=35.76 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=66.9
Q ss_pred hhHhhHHHHHHHHHcCccccccCHHHHHHHHHHHHHHHHHhhcccccCCCCCCcccHHHHHHHHHHHHHHHHHHhhHHHH
Q 000401 254 QRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITEC 333 (1565)
Q Consensus 254 ~k~~~LELiesiL~~~~~~F~~~pel~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~Lk~E~ 333 (1565)
.|.=+|+-|..++..+ .--...+.+...+| .+...+.+.+++. +.......+.++..+...++..+...+
T Consensus 23 ~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~-~~~~~i~~~l~d~--------Rs~v~~~A~~~l~~l~~~l~~~~~~~~ 92 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGN-APEDFPPDFVECLR-QLLDAIIKQLSDL--------RSKVSKTACQLLSDLARQLGSHFEPYA 92 (228)
T ss_dssp HHHHHHHHHHHHHHH--B-----HHHHHHHH----HHHHH-S-HH-----------HHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHHHHHHHcC-CccccHHHHHHHHH-HhHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 6777888999999888 22234577888888 4444454555531 222334678889999999999999999
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHhcChH
Q 000401 334 EVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEAR 368 (1565)
Q Consensus 334 EvfLs~l~~~L~~~~~~w~r~L~LE~l~~l~~dp~ 368 (1565)
+.++..|++.+...+ .+.|.-+.+.+..++..-.
T Consensus 93 ~~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 93 DILLPPLLKKLGDSK-KFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCC
Confidence 999999999885543 4778778888877755433
No 18
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.40 E-value=1.6e+02 Score=38.29 Aligned_cols=110 Identities=13% Similarity=0.135 Sum_probs=77.8
Q ss_pred CCcHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHhHHhhHHhhhhhcccCCcccccccccccCCCccchhhcccccch
Q 000401 899 DERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNT 978 (1565)
Q Consensus 899 D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~v~hsr~~ 978 (1565)
-+-.+||.+|...||..+---|..+..+.-+.++.+-. -.+.++.+. +++
T Consensus 185 a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf-~~l~~LL~d------------~~p----------------- 234 (1005)
T KOG1949|consen 185 ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQF-EELYSLLED------------PYP----------------- 234 (1005)
T ss_pred cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHH-HHHHHHhcC------------CCc-----------------
Confidence 35689999999999999988898898888888887644 344444311 111
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHHHhhc
Q 000401 979 AQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNS-ILNGSKEVSLAAINCLQTTVLSHS 1049 (1565)
Q Consensus 979 ~~k~W~ET~vlaL~gl~~lf~~~~~~L~~l~~f~~~W~~LL~~l~~~-~~~~~~els~a~~~~L~~lL~~~~ 1049 (1565)
.-+..|..|++++|..|+..+-. ..-..+|.++..- ..-...+|-.++++++..++-...
T Consensus 235 ------~VRS~a~~gv~k~~s~fWe~iP~-----~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~ 295 (1005)
T KOG1949|consen 235 ------MVRSTAILGVCKITSKFWEMIPP-----TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL 295 (1005)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc
Confidence 34667889999999999986642 2345566665543 344445888999999988775543
No 19
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=60.75 E-value=1.6e+02 Score=34.01 Aligned_cols=66 Identities=27% Similarity=0.371 Sum_probs=49.2
Q ss_pred hhhhhHHHHHHHHHhhccCC-----cHHHHHHHHHH--HHHHHhhccCCC--ChhHHHHHHHHhHH--hhHHhhhhh
Q 000401 881 DRDKLLFAVFSLLKKLGADE-----RPEVRNSAIRT--LFQTLGSHGQKL--SESMWEDCLWNYVF--PMLDCASHM 946 (1565)
Q Consensus 881 ~~~~LW~~LL~~L~~L~~D~-----R~EVRn~AiqT--Lfril~~~g~~l--s~~~W~~~~~~VLF--PLl~~l~~~ 946 (1565)
.|.+||-.|+..+.=+++.. .+.|-.-+.+. +|..+.+||+.| +|+.-+..|++++- +.|+++...
T Consensus 58 ~W~eLW~aLlsLl~Fl~~~~~~l~~~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~ 134 (237)
T PF08427_consen 58 HWSELWRALLSLLRFLTTYESDLKDSPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDM 134 (237)
T ss_pred cHHHHHHHHHHHHHHHHhchhhhhcccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHH
Confidence 49999999888777776432 34555555444 477788999988 77899999999886 788888644
No 20
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.75 E-value=9 Score=46.38 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=16.6
Q ss_pred cCCchhhHHHHHHHHHHH
Q 000401 439 LVASEAHSITLAIEGLLG 456 (1565)
Q Consensus 439 ll~~Ea~~I~~~~e~~a~ 456 (1565)
.++||||+|+|++|.|+-
T Consensus 289 rvqgEAqKveRlIeAFsq 306 (627)
T KOG0931|consen 289 RVQGEAQKVERLIEAFSQ 306 (627)
T ss_pred ecccHHHHHHHHHHHHHH
Confidence 589999999999999985
No 21
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=56.86 E-value=62 Score=38.57 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=24.4
Q ss_pred CcHHHHHHHHHHHHHHHhhcc-CCCChhHH
Q 000401 900 ERPEVRNSAIRTLFQTLGSHG-QKLSESMW 928 (1565)
Q Consensus 900 ~R~EVRn~AiqTLfril~~~g-~~ls~~~W 928 (1565)
...+||.-|++.+|+++..|| ..++...+
T Consensus 76 ~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 76 DDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 389999999999999999999 55555444
No 22
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=50.12 E-value=1.4e+02 Score=35.55 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=50.7
Q ss_pred HHHhhcChhHHHHHHHHHHHHhcCCCCCc---------ccCchHHHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCCc
Q 000401 16 AEARRRYPAVKDGAEHAILKLRSLSSPSE---------LAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAP 85 (1565)
Q Consensus 16 ~EskRK~~~lk~A~e~al~~Lk~~~~~~~---------l~~~~~~l~Pfllac~sk~~kl~~iaL~~lqkLis~~~i~~ 85 (1565)
.-.++.+++||..|=+++-.+=....... ......+++-|.-..++.++++-.+|..++-||+-+|.+..
T Consensus 71 ~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~ 149 (298)
T PF12719_consen 71 QALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD 149 (298)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 33444577788777766555433322211 12346799999999999999999999999999999999877
No 23
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=40.90 E-value=1.4e+02 Score=29.35 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=46.7
Q ss_pred chHHHHHHH-HHHHHhcCCCcchhHHHHHHHHHhHHHHHcccCCCcchhhhhhhcccCCCccccCcchhhhhhccccccc
Q 000401 795 DCIHECVDV-TGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQ 873 (1565)
Q Consensus 795 ~~~~~lV~~-L~~F~~q~~dlNISLtAi~llW~isD~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 873 (1565)
+++..++.- |..|. +.|..+-..|...|.+++...+..
T Consensus 23 ~~l~~Il~pVL~~~~--D~d~rVRy~AcEaL~ni~k~~~~~--------------------------------------- 61 (97)
T PF12755_consen 23 KYLDEILPPVLKCFD--DQDSRVRYYACEALYNISKVARGE--------------------------------------- 61 (97)
T ss_pred HHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Confidence 445555553 33333 347778888999888887655421
Q ss_pred CCCCCchhhhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHH
Q 000401 874 NHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTL 916 (1565)
Q Consensus 874 ~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril 916 (1565)
.-...--+|..|.+++.|+.+.||++| +.|=|.|
T Consensus 62 --------~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 62 --------ILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred --------HHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 001222345888999999999999999 5555554
No 24
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=40.28 E-value=1e+02 Score=34.14 Aligned_cols=89 Identities=10% Similarity=0.237 Sum_probs=67.5
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCCcch-HHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCCccCh
Q 000401 49 EDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSA-LKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENE 127 (1565)
Q Consensus 49 ~~~l~Pfllac~sk~~kl~~iaL~~lqkLis~~~i~~~~-l~~il~~l~~~~~~~de~vqLKILQ~L~~l~~s~~~~i~g 127 (1565)
..|+..++..|-+.++++-..|+..|+-.+.+|+++|.. ++.++ +|. ++ .++.+.=+-.+.+..+...|...++.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lI-AL~--ts-~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLI-ALE--TS-PNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhh-hhh--CC-CChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 578999999999999999999999999999999998875 44444 443 22 24457777888888888776555533
Q ss_pred HHHHHHHHHhhhccc
Q 000401 128 DNMAQALGICLRLLE 142 (1565)
Q Consensus 128 ~~L~~~l~~C~~L~~ 142 (1565)
...++++.+|..+.
T Consensus 83 -~~~~gi~~af~~~~ 96 (187)
T PF12830_consen 83 -RYSEGIRLAFDYQR 96 (187)
T ss_pred -HHHHHHHHHHHHHH
Confidence 45667888877754
No 25
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.02 E-value=3.1e+02 Score=37.93 Aligned_cols=123 Identities=19% Similarity=0.231 Sum_probs=84.5
Q ss_pred hHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHhHHhhHHhhhhhcccCCcccccccccccCC
Q 000401 885 LLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRG 964 (1565)
Q Consensus 885 LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~~~~~~~~~~~~ 964 (1565)
=|=-||..|-.-..++.+..|.+|+-+|+.+....|.++.+ +-..+.|||..=. .+++
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~------~~~~l~~lf~q~~--~d~s-------------- 172 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP------HLDDLLRLFSQTM--TDPS-------------- 172 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch------hHHHHHHHHHHhc--cCCc--------------
Confidence 57777888888889999999999999999999999999887 3334566666431 1110
Q ss_pred CccchhhcccccchhhhhHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 000401 965 GKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTT 1044 (1565)
Q Consensus 965 ~~~~~~~v~hsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~l~~f~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~l 1044 (1565)
..-.-+.++|+.+++.... ..-...+.|...--.++.-+.+++..+..+.+..++++|-++
T Consensus 173 ----------------~~vr~~a~rA~~a~~~~~~---~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El 233 (1075)
T KOG2171|consen 173 ----------------SPVRVAAVRALGAFAEYLE---NNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIEL 233 (1075)
T ss_pred ----------------chHHHHHHHHHHHHHHHhc---cchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHH
Confidence 0011334444444432221 122223556667777899999999999998888999999888
Q ss_pred HHhh
Q 000401 1045 VLSH 1048 (1565)
Q Consensus 1045 L~~~ 1048 (1565)
+...
T Consensus 234 ~e~~ 237 (1075)
T KOG2171|consen 234 LESE 237 (1075)
T ss_pred Hhhc
Confidence 7654
No 26
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=39.32 E-value=6e+02 Score=30.06 Aligned_cols=161 Identities=13% Similarity=0.051 Sum_probs=90.1
Q ss_pred hhhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHhHHhhHHhhhhhcccCCccccccccc
Q 000401 881 DRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKEL 960 (1565)
Q Consensus 881 ~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~~~~~~~~ 960 (1565)
.....|-.++-.+-.+.-|..+++|-.+++.|-.++..-.. ..|..+.+.-++.+|++....
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~----~~~~~L~~tGl~~v~~~al~~-------------- 173 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPA----AEWDILRRTGLFSVFEDALFP-------------- 173 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCCh----hhhHHHHHcChHHHHHHHHHH--------------
Confidence 35577777788889999999999999999999999974222 226555555555555544321
Q ss_pred ccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHhhhhccc--ccccchHHHHHH-HHHHHHHHHhCCchHHHHHH
Q 000401 961 GTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFL--ANLSNFWTGWES-LLHFVKNSILNGSKEVSLAA 1037 (1565)
Q Consensus 961 ~~~~~~~~~~~v~hsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L--~~l~~f~~~W~~-LL~~l~~~~~~~~~els~a~ 1037 (1565)
.+.+...-+...+..+-...+..-+.+++..-+..= .....+.+...+ +|..+..........+..+-
T Consensus 174 ---------~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~l 244 (282)
T PF10521_consen 174 ---------CLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVL 244 (282)
T ss_pred ---------HhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHH
Confidence 011111112223334445555555556654433211 111222233222 33333333333347888899
Q ss_pred HHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhhc
Q 000401 1038 INCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQ 1071 (1565)
Q Consensus 1038 ~~~L~~lL~~~~~~~~~~~~~~~~~~~~w~~i~~ 1071 (1565)
++.+..++..++.. .....+.+.-++..+..
T Consensus 245 l~~l~~~i~~lGi~---~~~hL~rii~~l~~~l~ 275 (282)
T PF10521_consen 245 LQQLPPIIDELGIS---SVKHLQRIIPVLSQILE 275 (282)
T ss_pred HHHHHHHHHHhccH---HHHHHHHHHHHHHHHhc
Confidence 99999998876532 24566666666655443
No 27
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=37.32 E-value=3.4e+02 Score=29.04 Aligned_cols=126 Identities=15% Similarity=0.153 Sum_probs=70.5
Q ss_pred HhhccCCcHHHHHHHHHHHHHHHhhcc--CCCChhHHHHHHHHhHHhhHHhhhhhcccCCcccccccccccCCCccchhh
Q 000401 894 KKLGADERPEVRNSAIRTLFQTLGSHG--QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHML 971 (1565)
Q Consensus 894 ~~L~~D~R~EVRn~AiqTLfril~~~g--~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 971 (1565)
.......+.-=|+.|++.|-+++...- ..++...|+.+|. .||-.++.-.+......+. .+ .
T Consensus 10 ~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ife-aL~~~i~~Ek~~y~~~~~~-~~---------s----- 73 (155)
T PF11640_consen 10 LRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFE-ALFRCIEKEKEAYSRKKSS-SA---------S----- 73 (155)
T ss_pred HHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHH-HHHHHHHHHHHHHhcCCCc-cc---------c-----
Confidence 333345567779999999999998654 8899999988776 4666665443221000000 00 0
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHhCCchH----HHHHHHHHHHHHHHh
Q 000401 972 IHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKE----VSLAAINCLQTTVLS 1047 (1565)
Q Consensus 972 v~hsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~l~~f~~~W~~LL~~l~~~~~~~~~e----ls~a~~~~L~~lL~~ 1047 (1565)
..++. ..=.+.+.-+++.++......+... .-..|++++-..+.....+ ++.--.++|+.+|..
T Consensus 74 ---~~~~~-~~RL~~~a~~lR~~ve~~~~~~k~k--------t~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~ 141 (155)
T PF11640_consen 74 ---TATTA-ESRLSSCASALRLFVEKSNSRLKRK--------TVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSY 141 (155)
T ss_pred ---hHHHH-HHHHHHHHHHHHHHHHHHHhhcccc--------hHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCC
Confidence 00000 0112444455555555555544422 2356788888888766644 444555666666554
No 28
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=37.29 E-value=6.4e+02 Score=28.29 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=67.9
Q ss_pred HHHHHhhccCCcHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHhHHhhHHhhhhhcccCCcccccccccccCCCccch
Q 000401 890 FSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVH 969 (1565)
Q Consensus 890 L~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~~~~~~~~~~~~~~~~~ 969 (1565)
+..|.+.+.|.-.-||..|.++|-.++...+ +..+++++++......
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----------~~~~~~~~~l~~~~~~----------------------- 142 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS----------YSPKILLEILSQGLKS----------------------- 142 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-----------H--HHHHHHHHHHTT------------------------
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC----------cHHHHHHHHHHHHHhC-----------------------
Confidence 5667888889999999999999999987544 1124456666644210
Q ss_pred hhcccccchhhhhHHHHHHHHHHHHHHHHhhhh---cccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 000401 970 MLIHHSRNTAQKQWDETLVLVLGGIARLLRSFF---PFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVL 1046 (1565)
Q Consensus 970 ~~v~hsr~~~~k~W~ET~vlaL~gl~~lf~~~~---~~L~~l~~f~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~ 1046 (1565)
++. ..+..++..+..++..+- ..+.. ......+...+.+++.-.+.+|-.+|.++|..+-.
T Consensus 143 ------Kn~------~vR~~~~~~l~~~l~~~~~~~~~l~~----~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 143 ------KNP------QVREECAEWLAIILEKWGSDSSVLQK----SAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp ------S-H------HHHHHHHHHHHHHHTT-----GGG------HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred ------CCH------HHHHHHHHHHHHHHHHccchHhhhcc----cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 111 345566666666666665 22221 11246788889999999999999999999988855
Q ss_pred h
Q 000401 1047 S 1047 (1565)
Q Consensus 1047 ~ 1047 (1565)
.
T Consensus 207 ~ 207 (228)
T PF12348_consen 207 H 207 (228)
T ss_dssp H
T ss_pred H
Confidence 4
No 29
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=36.23 E-value=74 Score=30.56 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q 000401 985 ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQT 1043 (1565)
Q Consensus 985 ET~vlaL~gl~~lf~~~~~~L~~l~~f~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~ 1043 (1565)
+.+.+.+..+..+...+.+.|. ..|..+++.+......++.++...|+++++.
T Consensus 33 ~vre~il~ci~qil~~~~~~i~------SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 33 DVRELILECILQILQSRGENIK------SGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH------hccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 7888999999999999888775 4799999999999998889999999998875
No 30
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=34.55 E-value=8.9e+02 Score=29.12 Aligned_cols=154 Identities=17% Similarity=0.128 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q 000401 985 ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLD 1064 (1565)
Q Consensus 985 ET~vlaL~gl~~lf~~~~~~L~~l~~f~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~~~~~~~~~~~~~ 1064 (1565)
+|+..+|.++.++|.+++.. +...+-..+|++.+.++++.++.+=...+.+.+.=+....+.. .-..+.++.+..
T Consensus 58 ~~Re~aL~~l~~~l~~~~~~----d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g-~~~~ei~~~~~~ 132 (309)
T PF05004_consen 58 STREAALEALIRALSSRYLP----DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG-EDSEEIFEELKP 132 (309)
T ss_pred HHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC-ccHHHHHHHHHH
Confidence 79999999999999888742 2223567889999999998877533334445554443433322 224667777777
Q ss_pred HHHHhhcCCCCCCCCCCccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcccCCCCCCccccCC--CCHHHHH
Q 000401 1065 VYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMITHDNYEIEFGH--VPPVLRT 1142 (1565)
Q Consensus 1065 ~w~~i~~~~~~~~~~~~~~~~q~~l~~f~~ly~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~d~~~--~s~lQ~~ 1142 (1565)
+..+++.-... ..+..+.++.|+.-+--. ..-+.+.+...+..|.......++..+...+.+.. -+++..+
T Consensus 133 ~L~~~l~d~s~-----~~~~R~~~~~aLai~~fv--~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 133 VLKRILTDSSA-----SPKARAACLEALAICTFV--GGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHhCCcc-----chHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 77666543211 123445666666654322 23456777766666663322212222222222222 3678888
Q ss_pred HHHhcccc
Q 000401 1143 ILEILPLL 1150 (1565)
Q Consensus 1143 vl~~l~~i 1150 (1565)
.|.+--++
T Consensus 206 AL~aW~lL 213 (309)
T PF05004_consen 206 ALSAWALL 213 (309)
T ss_pred HHHHHHHH
Confidence 88874444
No 31
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=34.16 E-value=4.6e+02 Score=30.74 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=44.6
Q ss_pred HHHHHhhccccc-cCCcHHHHHHHHHhhhccchhHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHH
Q 000401 740 VGHFLERCGEKL-HYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAY 807 (1565)
Q Consensus 740 ~~hlie~~g~~L-~sgW~~If~iL~~~~~~~~~~lv~~aF~~L~lI~~dfL~~Lp~~~~~~lV~~L~~F 807 (1565)
...|++++.+.+ ..|=.-|..++..+..++++.-+-.+|+.++.|+..|- + .+...++.|++..|
T Consensus 106 l~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~-~~~~e~lFd~~~cY 171 (262)
T PF14500_consen 106 LDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I-SEFAEDLFDVFSCY 171 (262)
T ss_pred HHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c-chhHHHHHHHhhhe
Confidence 334444443333 23445677888888888899999999999999998875 3 45566666666555
No 32
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.11 E-value=1.6e+03 Score=31.47 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=95.1
Q ss_pred hhhHHHHHHHHHhhc-cCCcHHHHHHHHHHHHHHHhhcc-CCCChhHHHHHHHHhHHhhHHhhhhhcccCCccccccccc
Q 000401 883 DKLLFAVFSLLKKLG-ADERPEVRNSAIRTLFQTLGSHG-QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKEL 960 (1565)
Q Consensus 883 ~~LW~~LL~~L~~L~-~D~R~EVRn~AiqTLfril~~~g-~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~~~~~~~~ 960 (1565)
..+|..++..+-... ..+-++|=..=+..|-..+..+| ..|.++.-+.+...+.--++............+ ...+.
T Consensus 727 ~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~--~eed~ 804 (1075)
T KOG2171|consen 727 KQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEED--DEEDD 804 (1075)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hhhhh
Confidence 478888887777744 55778888888888888999999 888888888888888888877775432211100 00010
Q ss_pred ccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 000401 961 GTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINC 1040 (1565)
Q Consensus 961 ~~~~~~~~~~~v~hsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~l~~f~~~W~~LL~~l~~~~~~~~~els~a~~~~ 1040 (1565)
+ ..+.....|+-...+..+++++..-+..+. .+|...|..++-++..++..+..---.-+.-.
T Consensus 805 d---------------~~eee~~~e~d~~ll~~i~~i~~~l~k~~k--~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~ 867 (1075)
T KOG2171|consen 805 D---------------IEEEEDLDEQDAYLLDAISDILAALAKALK--GSFLPFFENFLPLIVKLLKSKKTVARQWAVCI 867 (1075)
T ss_pred h---------------hHHHHHHhhhhHHHHHHHHHHHHHHHHHcc--ccccHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 0 011122225666667777777766666554 36777777777777777766665335555566
Q ss_pred HHHHHHhhc
Q 000401 1041 LQTTVLSHS 1049 (1565)
Q Consensus 1041 L~~lL~~~~ 1049 (1565)
+.+++....
T Consensus 868 ~~d~ie~~~ 876 (1075)
T KOG2171|consen 868 FDDLIEGCG 876 (1075)
T ss_pred HHHHHHhcc
Confidence 677766543
No 33
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=31.29 E-value=9e+02 Score=30.60 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=57.5
Q ss_pred hhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhhcc--------CCCChhHHHHHHHHhHHhhHHhhhhhcccCCcc
Q 000401 882 RDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG--------QKLSESMWEDCLWNYVFPMLDCASHMAATSSKD 953 (1565)
Q Consensus 882 ~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g--------~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~ 953 (1565)
...+|..+|.+|.+- .-..-+++=+..+.-....|| +..-+..|..++.+++.|-+.++...
T Consensus 240 l~~I~~lll~RLq~s---kT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~------- 309 (435)
T PF03378_consen 240 LKQIFTLLLTRLQSS---KTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGP------- 309 (435)
T ss_dssp HHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SH-------
T ss_pred HHHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCc-------
Confidence 346788888888763 222333333332222223343 23345678888888888866665311
Q ss_pred cccccccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHhCCc
Q 000401 954 EWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGS 1030 (1565)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~v~hsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~l~~f~~~W~~LL~~l~~~~~~~~ 1030 (1565)
.| +..+.=|++++...- +.+.. ...+.|..+++.+-+++....
T Consensus 310 ------------------------------~e-rKi~~vGltkLL~es-~~~~~--~~~~~w~~ll~~Ll~ll~~p~ 352 (435)
T PF03378_consen 310 ------------------------------IE-RKICAVGLTKLLCES-PAFLS--EYSQLWPPLLEALLKLLERPP 352 (435)
T ss_dssp ------------------------------HH-HHHHHHHHHHHHHSS-TTHHH--H-CHHHHHHHHHHHHHHHTTS
T ss_pred ------------------------------ch-hhHHHHHHHHHHhcc-Hhhhh--HHHHHHHHHHHHHHHHHcCCc
Confidence 02 455666777777542 22211 145689999998888876544
No 34
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=31.24 E-value=3.9e+02 Score=34.42 Aligned_cols=136 Identities=15% Similarity=0.228 Sum_probs=83.3
Q ss_pred hcChhHHHHHHHHHHHHhcCCCC-CcccCchHHHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCCcchHHHH-----HH
Q 000401 20 RRYPAVKDGAEHAILKLRSLSSP-SELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEI-----FS 93 (1565)
Q Consensus 20 RK~~~lk~A~e~al~~Lk~~~~~-~~l~~~~~~l~Pfllac~sk~~kl~~iaL~~lqkLis~~~i~~~~l~~i-----l~ 93 (1565)
.-++.||.-+=+.|..+-..+.. -++....+++.-++.+....+..+...|+.+|.++..+... +..+ +.
T Consensus 88 h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~----~~~l~~~~~~~ 163 (503)
T PF10508_consen 88 HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG----LEQLFDSNLLS 163 (503)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh----HHHHhCcchHH
Confidence 45778888876666554332211 22345566777777777889999999999999999987543 2233 45
Q ss_pred HHHhccCCCCchHHHHHHHHHHHHHcCCCCccChHHHHH--HHHHhhhcccccCChHHHHHHHHHHHHHHHH
Q 000401 94 MLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQ--ALGICLRLLENNRSSDSVRNTAAATFRQAVA 163 (1565)
Q Consensus 94 ~l~~~~~~~de~vqLKILQ~L~~l~~s~~~~i~g~~L~~--~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv~ 163 (1565)
.|.......++.+.+|++.++..+.... .. +=+.+.. ++....+-..+ +.. .++-+|-..+.+|..
T Consensus 164 ~L~~l~~~~~~~vR~Rv~el~v~i~~~S-~~-~~~~~~~sgll~~ll~eL~~-dDi-Lvqlnalell~~La~ 231 (503)
T PF10508_consen 164 KLKSLMSQSSDIVRCRVYELLVEIASHS-PE-AAEAVVNSGLLDLLLKELDS-DDI-LVQLNALELLSELAE 231 (503)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcC-HH-HHHHHHhccHHHHHHHHhcC-ccH-HHHHHHHHHHHHHHc
Confidence 5555444435579999999988886431 11 0011111 33334443333 444 577777777777654
No 35
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.86 E-value=1.5e+03 Score=30.66 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=74.9
Q ss_pred HHHHHhhccCC-cHHHHHHHHHHHHHHHhhccCCCChhHHHHHH---HHhHHhhHHhhhhhcccCCcccccccccccCCC
Q 000401 890 FSLLKKLGADE-RPEVRNSAIRTLFQTLGSHGQKLSESMWEDCL---WNYVFPMLDCASHMAATSSKDEWQGKELGTRGG 965 (1565)
Q Consensus 890 L~~L~~L~~D~-R~EVRn~AiqTLfril~~~g~~ls~~~W~~~~---~~VLFPLl~~l~~~~~~~s~~~~~~~~~~~~~~ 965 (1565)
+-.+.++-.|+ ..-||=.|++||=-.++.. .|+++.....+ +.-+|.|+..+.+
T Consensus 528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~--nF~~dsFlp~lenlf~~lfkll~~~~e-------------------- 585 (978)
T KOG1993|consen 528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDW--NFSEDSFLPYLENLFVLLFKLLKAVEE-------------------- 585 (978)
T ss_pred HHHHHHhcCccccceeehHHHHHHHHhhhhc--cCChhhhhhhHHHHHHHHHHHHHHHhh--------------------
Confidence 45567777886 8999999999998777743 35555554443 2334444443321
Q ss_pred ccchhhcccccchhhhhHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHhCCc--hHHHHHHHHHHHH
Q 000401 966 KAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGS--KEVSLAAINCLQT 1043 (1565)
Q Consensus 966 ~~~~~~v~hsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~l~~f~~~W~~LL~~l~~~~~~~~--~els~a~~~~L~~ 1043 (1565)
-+|++.+|+.++.+..+-=+.+.. .=..++.|+..+..... .-+..|.+..|.+
T Consensus 586 ------------------~Dtk~~VL~~ls~lI~r~~e~I~P------~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~ 641 (978)
T KOG1993|consen 586 ------------------CDTKTSVLNLLSTLIERVSEHIAP------YASTIVQYLPLLWEESEEEPLLRCALLATLRN 641 (978)
T ss_pred ------------------hhhHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 178888888888888765555532 22456677766654332 3477788888999
Q ss_pred HHHhhcC
Q 000401 1044 TVLSHST 1050 (1565)
Q Consensus 1044 lL~~~~~ 1050 (1565)
++...+.
T Consensus 642 lV~alg~ 648 (978)
T KOG1993|consen 642 LVNALGA 648 (978)
T ss_pred HHHHhcc
Confidence 8877654
No 36
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=29.01 E-value=3.8e+02 Score=29.72 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=68.2
Q ss_pred CchHHHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCCc--chHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCCc
Q 000401 47 QSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAP--SALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHP 124 (1565)
Q Consensus 47 ~~~~~l~Pfllac~sk~~kl~~iaL~~lqkLis~~~i~~--~~l~~il~~l~~~~~~~de~vqLKILQ~L~~l~~s~~~~ 124 (1565)
+-..+|--|.-+..-+.....-+|..++..|+.++.-+. ..+++++-.|..|-+..+.+|--.+|++|..++++. .
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~--~ 112 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS--D 112 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh--h
Confidence 345788888888888888888999999999999833222 246777777877777767789999999999998873 3
Q ss_pred cChHHHH---HHHHHhhhcccc
Q 000401 125 ENEDNMA---QALGICLRLLEN 143 (1565)
Q Consensus 125 i~g~~L~---~~l~~C~~L~~~ 143 (1565)
.-|+.|. +-+.-+++++.+
T Consensus 113 ~vG~aLvPyyrqLLp~ln~f~~ 134 (183)
T PF10274_consen 113 MVGEALVPYYRQLLPVLNLFKN 134 (183)
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 3365553 333345566543
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=27.01 E-value=1.5e+03 Score=29.28 Aligned_cols=129 Identities=15% Similarity=0.173 Sum_probs=73.3
Q ss_pred hhhHhhHHHHHHHHHcCccccccCHHHHHHHHHHHHHHHHHhhcccccCCCCCCcccH--HHHHHHHHHHHHHHHHHhhH
Q 000401 253 LQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYF--RRLVLRSVAHIIRLYSSSLI 330 (1565)
Q Consensus 253 ~~k~~~LELiesiL~~~~~~F~~~pel~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F--~~~~lRi~~~Li~~~~~~Lk 330 (1565)
+-|.=++|+|..+-+.. .-+.++.+..+.+.|.+.+....+.+ ....| + -.++.|-.+....-....
T Consensus 217 Lvqlnalell~~La~~~-------~g~~yL~~~gi~~~L~~~l~~~~~dp---~~~~~~l~-g~~~f~g~la~~~~~~v~ 285 (503)
T PF10508_consen 217 LVQLNALELLSELAETP-------HGLQYLEQQGIFDKLSNLLQDSEEDP---RLSSLLLP-GRMKFFGNLARVSPQEVL 285 (503)
T ss_pred HHHHHHHHHHHHHHcCh-------hHHHHHHhCCHHHHHHHHHhccccCC---cccchhhh-hHHHHHHHHHhcChHHHH
Confidence 46777778777665522 22567788888877777776432211 01122 2 123444444443223344
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhcChHHHHHHHHhcCCCCCCchHHHHHHHHHHHHhh
Q 000401 331 TECEVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARVVS 399 (1565)
Q Consensus 331 ~E~EvfLs~l~~~L~~~~~~w~r~L~LE~l~~l~~dp~ll~~iy~nYD~~~~~~nI~~~li~~L~~~~~ 399 (1565)
.....|+..++..+++..+ =.+..++|.|..|+...+=-.-+. .+..+-++.+++.++...+
T Consensus 286 ~~~p~~~~~l~~~~~s~d~-~~~~~A~dtlg~igst~~G~~~L~------~~~~~~~~~~l~~~~~~~~ 347 (503)
T PF10508_consen 286 ELYPAFLERLFSMLESQDP-TIREVAFDTLGQIGSTVEGKQLLL------QKQGPAMKHVLKAIGDAIK 347 (503)
T ss_pred HHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHhCCHHHHHHHH------hhcchHHHHHHHHHHHHhc
Confidence 4556677777777765443 366899999999987776655551 1224455555555554443
No 38
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=26.70 E-value=1.2e+03 Score=32.11 Aligned_cols=163 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred ccCCcHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHhHHhhHHhhhhhcccCCcccccccccccCCCccchhhccccc
Q 000401 897 GADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSR 976 (1565)
Q Consensus 897 ~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~v~hsr 976 (1565)
..|...|||-+||..+=+++...| ++-..-+..+|--+++++++.
T Consensus 579 a~d~DqeVkeraIscmgq~i~~fg-----D~l~~eL~~~L~il~eRl~nE------------------------------ 623 (1233)
T KOG1824|consen 579 ATDSDQEVKERAISCMGQIIANFG-----DFLGNELPRTLPILLERLGNE------------------------------ 623 (1233)
T ss_pred cccccHHHHHHHHHHHHHHHHHHh-----hhhhhhhHHHHHHHHHHHhch------------------------------
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhc-ccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhhcCCCCCC
Q 000401 977 NTAQKQWDETLVLVLGGIARLLRSFFP-FLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLP 1055 (1565)
Q Consensus 977 ~~~~k~W~ET~vlaL~gl~~lf~~~~~-~L~~l~~f~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~~~~~~ 1055 (1565)
-|+.-|.+.++.++..-++ .+.. ....++..+..+++-..+.+..+....+.+++... .+.++
T Consensus 624 --------iTRl~AvkAlt~Ia~S~l~i~l~~------~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~--~~~~~ 687 (1233)
T KOG1824|consen 624 --------ITRLTAVKALTLIAMSPLDIDLSP------VLTEILPELASFLRKNQRALRLATLTALDKLVKNY--SDSIP 687 (1233)
T ss_pred --------hHHHHHHHHHHHHHhccceeehhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccc
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCccchHHHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHH
Q 000401 1056 VAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYV---QAQKMFDDRMYGQLLAIIDL 1117 (1565)
Q Consensus 1056 ~~~~~~~~~~w~~i~~~~~~~~~~~~~~~~q~~l~~f~~ly~---~~~~~~~~~~~~~~l~~l~~ 1117 (1565)
.+..+.+..=...+...+ .-...|..+.....+.. ..-......-+.++++++++
T Consensus 688 ~~~~e~vL~el~~Lises-------dlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~S 745 (1233)
T KOG1824|consen 688 AELLEAVLVELPPLISES-------DLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRS 745 (1233)
T ss_pred HHHHHHHHHHhhhhhhHH-------HHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhC
No 39
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=26.67 E-value=46 Score=36.83 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=18.3
Q ss_pred cCCchhhHHHHHHHHHHHHHh
Q 000401 439 LVASEAHSITLAIEGLLGVVF 459 (1565)
Q Consensus 439 ll~~Ea~~I~~~~e~~a~~i~ 459 (1565)
.+|||+|.|+|++|.||+..+
T Consensus 93 ~lpgE~Q~Idrile~Fs~~y~ 113 (185)
T cd00171 93 RLPGEAQKIDRLLEKFSERYC 113 (185)
T ss_pred cCCchHHHHHHHHHHHHHHHH
Confidence 489999999999999997543
No 40
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=26.12 E-value=8.5e+02 Score=26.27 Aligned_cols=101 Identities=16% Similarity=0.024 Sum_probs=66.7
Q ss_pred HHHHHHcCccccccC-HHHHHHHHHHHHHHHHHhhcccccCCCCCCcccHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHH
Q 000401 262 LEFILSNHVSLFRML-VSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLY-SSSLITECEVFLSM 339 (1565)
Q Consensus 262 iesiL~~~~~~F~~~-pel~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~Li~~~-~~~Lk~E~EvfLs~ 339 (1565)
|-+.|.+++.+-... ....+.++.++-.+| +++.. ..-+ .-+.++-..+..- .+.|...++.++..
T Consensus 4 ll~~l~~~~~~~~~~~~~~l~~l~~ri~~LL----~s~~~------~~rw--~G~~Ll~~~~~~~~~e~l~~~~~~W~~~ 71 (165)
T PF08167_consen 4 LLSTLRSCGLLLSAPSKSALHKLVTRINSLL----QSKSA------YSRW--AGLCLLKVTVEQCSWEILLSHGSQWLRA 71 (165)
T ss_pred HHHHHHccchhhcccCHHHHHHHHHHHHHHh----CCCCh------hhHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345566666665554 566677777766666 43211 1122 2344444454543 57888999999999
Q ss_pred HHHhccCCCcHHHHHHHHHHHHHHh----cChHHHHHHH
Q 000401 340 LVKVTFLDLPLWHRILVLEILRGFC----VEARTLRLLF 374 (1565)
Q Consensus 340 l~~~L~~~~~~w~r~L~LE~l~~l~----~dp~ll~~iy 374 (1565)
++++|+++.|.--++.+...+..|+ .-|++.|++-
T Consensus 72 Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~ 110 (165)
T PF08167_consen 72 LLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIA 110 (165)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHh
Confidence 9999988777778888888888775 4577777763
No 41
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=25.75 E-value=5.6e+02 Score=32.31 Aligned_cols=114 Identities=22% Similarity=0.235 Sum_probs=74.5
Q ss_pred HHHHHhhccCCcHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHhHHhhHHhhhhhcccCCcccccccccccCCCccch
Q 000401 890 FSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVH 969 (1565)
Q Consensus 890 L~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~~~~~~~~~~~~~~~~~ 969 (1565)
...|..+..++|.+=|++|++-|...+...+ |+ .|+.+|.++|.-+|+.+....
T Consensus 289 ~~~l~~~~g~e~a~~~k~alsel~~m~~e~s--fs--vWeq~f~~iL~~l~EvL~d~~---------------------- 342 (516)
T KOG2956|consen 289 ADLLKEISGSERASERKEALSELPKMLCEGS--FS--VWEQHFAEILLLLLEVLSDSE---------------------- 342 (516)
T ss_pred HHHHHhccCccchhHHHHHHHHHHHHHHccc--hh--HHHHHHHHHHHHHHHHHccch----------------------
Confidence 4566777888999999999999999887543 44 499999999999999874210
Q ss_pred hhcccccchhhhhHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Q 000401 970 MLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSH 1048 (1565)
Q Consensus 970 ~~v~hsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~l~~f~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~~~ 1048 (1565)
+. --..+||+-+.++..+-=..|... .=..+-..++ +.+...+++...|-++.-.++..+
T Consensus 343 -------~~------~~k~laLrvL~~ml~~Q~~~l~Ds-----tE~ai~K~Le-aa~ds~~~v~~~Aeed~~~~las~ 402 (516)
T KOG2956|consen 343 -------DE------IIKKLALRVLREMLTNQPARLFDS-----TEIAICKVLE-AAKDSQDEVMRVAEEDCLTTLASH 402 (516)
T ss_pred -------hh------HHHHHHHHHHHHHHHhchHhhhch-----HHHHHHHHHH-HHhCCchhHHHHHHHHHHHHHHhh
Confidence 00 236788888888887665554321 1112223333 334444556666666655666554
No 42
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=25.09 E-value=51 Score=36.53 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=18.8
Q ss_pred ccCCchhhHHHHHHHHHHHHHh
Q 000401 438 VLVASEAHSITLAIEGLLGVVF 459 (1565)
Q Consensus 438 ~ll~~Ea~~I~~~~e~~a~~i~ 459 (1565)
+.+|||+|.|+|++|+||...+
T Consensus 93 f~lpgE~q~Idrile~Fs~~y~ 114 (187)
T smart00222 93 FRLPGEAQKIDRLLEAFSSRYC 114 (187)
T ss_pred CcCCchHHHHHHHHHHHHHHHH
Confidence 3489999999999999997544
No 43
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=24.30 E-value=6.1e+02 Score=32.36 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=53.6
Q ss_pred HHHHHHHHh-cCCCchHHHHHHHHHHHHHccCCCCcchHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCC
Q 000401 51 ILRIFLMAC-EVRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSR 121 (1565)
Q Consensus 51 ~l~Pfllac-~sk~~kl~~iaL~~lqkLis~~~i~~~~l~~il~~l~~~~~~~de~vqLKILQ~L~~l~~s~ 121 (1565)
++.=....| .|.+......+|..+.-.|.||.||.+.+..++..||...... +..=..-+++..++.++
T Consensus 177 lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~ 246 (464)
T PF11864_consen 177 LVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSH 246 (464)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCc
Confidence 444333345 5777888899999999999999999999999999999875443 34446778888888774
No 44
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.24 E-value=1.1e+03 Score=34.33 Aligned_cols=230 Identities=14% Similarity=0.137 Sum_probs=129.6
Q ss_pred hhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHhHHhhHHhhhhhcccCCcccccccccc
Q 000401 882 RDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELG 961 (1565)
Q Consensus 882 ~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~~~~~~~~~ 961 (1565)
...-|-.+|..+..-+.|+...+=..|.++.-.++..|-..-.+..- .+|.+-+ +.|.+.-.. .... .
T Consensus 1065 ikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~-~sf~d~v-~cl~~F~~~--~~~~------~-- 1132 (1514)
T KOG0929|consen 1065 IKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEM-DSFKDCV-KCLEEFTKN--LGFP------D-- 1132 (1514)
T ss_pred hhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhh-HHHHHHH-HHHHHHHHh--cCCC------c--
Confidence 34679999999999999999999999999998888766543333222 2233222 222222111 0000 0
Q ss_pred cCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHhhhhcccc-----cccchHHHHHHHHHHHHHHHhCCchHHHHH
Q 000401 962 TRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLA-----NLSNFWTGWESLLHFVKNSILNGSKEVSLA 1036 (1565)
Q Consensus 962 ~~~~~~~~~~v~hsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~-----~l~~f~~~W~~LL~~l~~~~~~~~~els~a 1036 (1565)
|+-+. .+-.......+.+- .+++.+. ..+.+...|--++--+...+.....++-..
T Consensus 1133 ------------~s~~a-----I~~lr~ca~k~~e~--~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~ 1193 (1514)
T KOG0929|consen 1133 ------------DSLNA-----IRFLRLCALKLAEG--VYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKR 1193 (1514)
T ss_pred ------------cchHH-----HHHHHHHHHHhccc--cchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHH
Confidence 01000 01111111111111 2233333 234456678888887777666566799999
Q ss_pred HHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhhcCCCCCCCCC--CccchH---HHHHHHHHHHHHHHhcCCHHHHHHH
Q 000401 1037 AINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNA--AGKVKQ---EILHGLGELYVQAQKMFDDRMYGQL 1111 (1565)
Q Consensus 1037 ~~~~L~~lL~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~~~--~~~~~q---~~l~~f~~ly~~~~~~~~~~~~~~~ 1111 (1565)
+.+-+-.++...+. +|.++.|+.++.+.-.|+.......... .++... .+++++.+|+.+.+..+. -.+..+
T Consensus 1194 al~vlF~il~~~g~--~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~-~lL~~~ 1270 (1514)
T KOG0929|consen 1194 ALEVLFDILKEHGD--DFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLN-NLLPKV 1270 (1514)
T ss_pred HHHHHHHHHHhhhh--hccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 99999999988765 4578999988884444554321111111 112222 345677777776666665 677888
Q ss_pred HHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhcccc
Q 000401 1112 LAIIDLAVRQTMITHDNYEIEFGHVPPVLRTILEILPLL 1150 (1565)
Q Consensus 1112 l~~l~~~~~~~~~~~~~~~~d~~~~s~lQ~~vl~~l~~i 1150 (1565)
+.+|..+++.+- -..-....+-+|.-|...-.-+
T Consensus 1271 ~~ll~~ci~~~n-----~~la~~g~~cl~~l~~~n~~~f 1304 (1514)
T KOG0929|consen 1271 LGLLVGCIKQDN-----QQLARIGTSCLLQLVSSNGEKF 1304 (1514)
T ss_pred HHHHHHHhcCcc-----hhhHHhHHHHHHHHHHhccccc
Confidence 888888887642 1111124555565555554433
No 45
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=23.62 E-value=2.1e+02 Score=38.49 Aligned_cols=94 Identities=14% Similarity=0.251 Sum_probs=65.4
Q ss_pred HHHcCccccccCHHHHHHHHHHHHHHHHHhhcccccCCCCCCcccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Q 000401 265 ILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT 344 (1565)
Q Consensus 265 iL~~~~~~F~~~pel~~llr~~lc~lLi~~ls~n~~~~~~~~~~~F~~~~lRi~~~Li~~~~~~Lk~E~EvfLs~l~~~L 344 (1565)
+++.-..+..-.|+|.+-.+..+||+++..+..+++ .|.-...+.-+|--++. -....+..+|.++..|+.++
T Consensus 550 lmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~------DP~V~~~~qd~f~el~q-~~~~~g~m~e~~iPslisil 622 (1005)
T KOG2274|consen 550 LMEALSSVVKLDPEFAASMESKICPLTINLFLKYSE------DPQVASLAQDLFEELLQ-IAANYGPMQERLIPSLISVL 622 (1005)
T ss_pred HHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcC------CchHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHH
Confidence 333334455668999999999999999998887653 56544445555555555 33456788999999999998
Q ss_pred cCC---CcHHHHHHHHHHHHHHhc
Q 000401 345 FLD---LPLWHRILVLEILRGFCV 365 (1565)
Q Consensus 345 ~~~---~~~w~r~L~LE~l~~l~~ 365 (1565)
+.+ .|.-.-.++++++.-+.+
T Consensus 623 ~~~~~~~~~~l~~~aidvLttvvr 646 (1005)
T KOG2274|consen 623 QLNADKAPAGLCAIAIDVLTTVLR 646 (1005)
T ss_pred cCcccccCchhhHHHHHHHHHHHh
Confidence 653 244555778888775543
No 46
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=23.29 E-value=4.5e+02 Score=28.71 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHhHHhhHHhhhhhcccCCcccccccccccCCCccchhhcccccchhhh
Q 000401 902 PEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQK 981 (1565)
Q Consensus 902 ~EVRn~AiqTLfril~~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~v~hsr~~~~k 981 (1565)
|.||+.|+-++-+....|.+...+ |-. .++..+. |
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~--~~~-------~l~~~L~--------D---------------------------- 36 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEP--YLP-------NLYKCLR--------D---------------------------- 36 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHh--HHH-------HHHHHHC--------C----------------------------
Confidence 789999999999999999877665 532 2222221 0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Q 000401 982 QWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLS 1047 (1565)
Q Consensus 982 ~W~ET~vlaL~gl~~lf~~~~~~L~~l~~f~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~~ 1047 (1565)
....-+..|+..+++|+..-+-.. ...++..+-.++.-.+.+|...|..+|.++...
T Consensus 37 ~~~~VR~~al~~Ls~Li~~d~ik~---------k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 37 EDPLVRKTALLVLSHLILEDMIKV---------KGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCHHHHHHHHHHHHHHHHcCceee---------hhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 011456667777888876544433 233446666788888889999999999999875
No 47
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.75 E-value=3e+02 Score=35.93 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=40.7
Q ss_pred cCCcHHHHHHHHHhhhccchhHHHHHHHHHHHHHhcCCCCCCc----chHHHHHHHHHHHHhcC
Q 000401 752 HYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPT----DCIHECVDVTGAYSSQK 811 (1565)
Q Consensus 752 ~sgW~~If~iL~~~~~~~~~~lv~~aF~~L~lI~~dfL~~Lp~----~~~~~lV~~L~~F~~q~ 811 (1565)
.++|+.++..|-..-+..+...-.=||..|+.||.|-.+.+.. .-+..++.-+-.|.+..
T Consensus 123 ~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~ 186 (885)
T KOG2023|consen 123 LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP 186 (885)
T ss_pred cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC
Confidence 5799999988877765444456667999999999875443332 33455666666666654
No 48
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=22.20 E-value=3.9e+02 Score=32.27 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=76.7
Q ss_pred CcHHHHHHHHHHHHHHHh-hccCCCChhHHHHHHHHhHHhhHHhhhhhcccCCcccccccccccCCCccchhhcccccch
Q 000401 900 ERPEVRNSAIRTLFQTLG-SHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNT 978 (1565)
Q Consensus 900 ~R~EVRn~AiqTLfril~-~~g~~ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~v~hsr~~ 978 (1565)
.-|+.|..-+=.++.++- ..|+.+.+ .-..++..|.-|.++-+.+. ..+
T Consensus 83 ~~p~~r~~evL~l~~~ii~kl~~~~~~-~v~~I~~~vf~~Tl~MI~~d----------~~~------------------- 132 (319)
T PF08767_consen 83 SVPDAREPEVLSLMATIINKLGELIQP-QVPQILEAVFECTLPMINKD----------FEE------------------- 132 (319)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHGGGCCC-CHHHHHHHHHHHHHHHHSST----------SSS-------------------
T ss_pred CCccccChhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhh----------hhh-------------------
Confidence 556667666555665554 56665554 34567777777777765311 011
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhhcC
Q 000401 979 AQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHST 1050 (1565)
Q Consensus 979 ~~k~W~ET~vlaL~gl~~lf~~~~~~L~~l~~f~~~W~~LL~~l~~~~~~~~~els~a~~~~L~~lL~~~~~ 1050 (1565)
.-|-++--.+.+..+...+|+.+..++. ..+..+++.+...+.....+++..+++.+.+++.....
T Consensus 133 ----yPe~r~~ff~LL~~i~~~~f~~l~~lp~--~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 133 ----YPEHRVNFFKLLRAINEHCFPALLQLPP--EQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHTHHHHHS-H--HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ----ChHHHHHHHHHHHHHHHHhHHHHHcCCH--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 1255666666777777777877765542 35677899999999999999999999999999986654
No 49
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=21.92 E-value=7.5e+02 Score=28.90 Aligned_cols=129 Identities=12% Similarity=0.116 Sum_probs=84.3
Q ss_pred HHHHHHHHHHh-hcChhHHHHHHHHHHHHhcCCCCCcccCchHHHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCCcch
Q 000401 9 SDLRALSAEAR-RRYPAVKDGAEHAILKLRSLSSPSELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSA 87 (1565)
Q Consensus 9 ~dL~~L~~Esk-RK~~~lk~A~e~al~~Lk~~~~~~~l~~~~~~l~Pfllac~sk~~kl~~iaL~~lqkLis~~~i~~~~ 87 (1565)
.+|+.|+.--+ .+.|.+++.+--++......+...+..+.-..+.++.--..++++++...|+.+|..|-.. .=+...
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhHHH
Confidence 57788887755 4689999999988888776665555555556667777777889999999999999877221 111223
Q ss_pred HHHHHHHHHhc--cCCCCchHHHHHHHHHHHHHcCCCCccChHHHHHHHHHhhhcc
Q 000401 88 LKEIFSMLKNH--ADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLL 141 (1565)
Q Consensus 88 l~~il~~l~~~--~~~~de~vqLKILQ~L~~l~~s~~~~i~g~~L~~~l~~C~~L~ 141 (1565)
++.-+.-+++- +..-+..+|+--|+.|..+-.+. -+...+.+.+.-+++|.
T Consensus 91 Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~---~~~~~l~~~i~~ll~LL 143 (254)
T PF04826_consen 91 IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN---DYHHMLANYIPDLLSLL 143 (254)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc---chhhhHHhhHHHHHHHH
Confidence 44334444432 11224468999999888884331 12345666777677774
No 50
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=21.69 E-value=65 Score=35.78 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=18.5
Q ss_pred ccCCchhhHHHHHHHHHHHHHh
Q 000401 438 VLVASEAHSITLAIEGLLGVVF 459 (1565)
Q Consensus 438 ~ll~~Ea~~I~~~~e~~a~~i~ 459 (1565)
+.+|||+|.|+|+++.||+..+
T Consensus 96 f~LpgE~q~idril~~Fs~~y~ 117 (190)
T PF01369_consen 96 FRLPGESQQIDRILEAFSERYY 117 (190)
T ss_dssp S-BTSSHHHHHHHHHHHHHHHH
T ss_pred eeeccchHHHHHHHHHHHHHHH
Confidence 4589999999999999997554
No 51
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=21.65 E-value=1.7e+02 Score=28.70 Aligned_cols=105 Identities=11% Similarity=0.106 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHccC------CCCcchHHHHHHHHHhccCCCCchHHHHHHHHHHHHHcCCCC
Q 000401 50 DILRIFLMACEVRTVKLSVIGLSCIQKLISHD------AVAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLH 123 (1565)
Q Consensus 50 ~~l~Pfllac~sk~~kl~~iaL~~lqkLis~~------~i~~~~l~~il~~l~~~~~~~de~vqLKILQ~L~~l~~s~~~ 123 (1565)
..+.+++.-+...+.++..-|+.+|..+.... ++....++.+++.|. -.+..|+-..+.+|-.+..+...
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK----SEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh----CCCHHHHHHHHHHHHHHccCcHH
Confidence 45677777777888899999999999988762 122233444444443 24567888888888888765321
Q ss_pred ccChHHHHH--HHHHhhhcccccCChHHHHHHHHHHHHHHH
Q 000401 124 PENEDNMAQ--ALGICLRLLENNRSSDSVRNTAAATFRQAV 162 (1565)
Q Consensus 124 ~i~g~~L~~--~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv 162 (1565)
. -+.+.+ ++....++ ....+. -++..|..+|.++.
T Consensus 83 ~--~~~~~~~g~l~~l~~~-l~~~~~-~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 N--KLIVLEAGGVPKLVNL-LDSSNE-DIQKNATGALSNLA 119 (120)
T ss_pred H--HHHHHHCCChHHHHHH-HhcCCH-HHHHHHHHHHHHhh
Confidence 1 011111 22223332 223344 67778888887764
No 52
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=21.61 E-value=2.2e+02 Score=27.76 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=45.9
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHhcCCCC-CcccCchHHHHHHHHHhcCCCchHHHHHHHHHHHHHccC
Q 000401 13 ALSAEARRRYPAVKDGAEHAILKLRSLSSP-SELAQSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHD 81 (1565)
Q Consensus 13 ~L~~EskRK~~~lk~A~e~al~~Lk~~~~~-~~l~~~~~~l~Pfllac~sk~~kl~~iaL~~lqkLis~~ 81 (1565)
.|..--+..++++|+.+=.+|..+-..... ........++.+++-...+++.++...|+.+|..|...+
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 344444556678887777776666543211 011122367777777778889999999999999997654
No 53
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=20.40 E-value=6.3e+02 Score=26.72 Aligned_cols=110 Identities=17% Similarity=0.207 Sum_probs=74.0
Q ss_pred CchHHHHHHHHHhcCCCchHHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc---cCCCCchHHHHHHHHHHH--HHcCC
Q 000401 47 QSEDILRIFLMACEVRTVKLSVIGLSCIQKLISHDAVAPSALKEIFSMLKNH---ADMVDESVQLKTLQTILI--IFQSR 121 (1565)
Q Consensus 47 ~~~~~l~Pfllac~sk~~kl~~iaL~~lqkLis~~~i~~~~l~~il~~l~~~---~~~~de~vqLKILQ~L~~--l~~s~ 121 (1565)
+-.+.+.-|+-+.++.|.+++..++++|..| +.++...+-|++++--. ...++ -+..-+.-++.. ++.-+
T Consensus 55 rql~vLdlFvdsl~e~ne~LvefgIgglCNl----C~d~~n~~~I~ea~g~plii~~lss-p~e~tv~sa~~~l~~l~~~ 129 (173)
T KOG4646|consen 55 RQLDVLDLFVDSLEEQNELLVEFGIGGLCNL----CLDKTNAKFIREALGLPLIIFVLSS-PPEITVHSAALFLQLLEFG 129 (173)
T ss_pred HHhhHHHHHHHHhhcccHHHHHHhHHHHHhh----ccChHHHHHHHHhcCCceEEeecCC-ChHHHHHHHHHHHHHhcCc
Confidence 4457888999999999999999999999988 66777777787776532 11222 122233333333 33334
Q ss_pred CCccChHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHH
Q 000401 122 LHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAV 162 (1565)
Q Consensus 122 ~~~i~g~~L~~~l~~C~~L~~~sk~~~~v~~TA~ATL~Qlv 162 (1565)
.....+++|...+.-|..=+.-+++. .-+|.|++-|.|-+
T Consensus 130 ~Rt~r~ell~p~Vv~~v~r~~~s~s~-~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 130 ERTERDELLSPAVVRTVQRWRESKSH-DERNLASAFLDKHV 169 (173)
T ss_pred ccchhHHhccHHHHHHHHHHHHHhhH-HHHHHHHHHHHhhc
Confidence 44445778888777775544446776 78999998887754
Done!