Query 000401
Match_columns 1565
No_of_seqs 286 out of 698
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 18:04:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000401.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_178-182//hhsearch_pdb/000401hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltl_A Brefeldin A-inhibited g 1.0 1 1 39.6 -0.7 22 438-459 108-129 (211)
2 1r8s_E ARNO; protein transport 1.0 1 1 39.3 -0.7 22 438-459 102-123 (203)
3 4fdd_A Transportin-1; heat rep 1.0 1 1 26.5 62.2 271 8-367 12-287 (852)
4 1ku1_A ARF guanine-nucleotide 1.0 1 1 26.0 2.8 23 438-460 113-135 (230)
5 1xsz_A Guanine nucleotide exch 1.0 1 1 24.4 2.8 22 438-459 100-121 (356)
6 2r09_A Cytohesin-3; autoinhibi 1.0 1 1 23.7 2.8 22 438-459 104-125 (347)
7 2qk2_A LP04448P; mini spindles 1.0 1 1 23.1 21.7 115 884-1049 94-208 (242)
8 4b8j_A Importin subunit alpha- 1.0 1 1 20.9 18.2 16 901-916 342-357 (528)
9 1ibr_B P95, importin beta-1 su 1.0 1 1 20.0 23.0 34 1014-1047 125-160 (462)
10 1b3u_A Protein (protein phosph 1.0 1 1 19.8 16.2 103 894-1047 447-549 (588)
No 1
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=1.00 E-value=1 Score=39.55 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4587601279999999987886
Q 000401 438 VLVASEAHSITLAIEGLLGVVF 459 (1565)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~~i~ 459 (1565)
..+|||+|+|+|++|.||+..+
T Consensus 108 f~LPgEaQ~IdRile~Fa~ry~ 129 (211)
T 3ltl_A 108 FRLPGEAQKIDRLMEKFAARYL 129 (211)
T ss_dssp SCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7179842699999999999999
No 2
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=1.00 E-value=1 Score=39.35 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4587601279999999987886
Q 000401 438 VLVASEAHSITLAIEGLLGVVF 459 (1565)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~~i~ 459 (1565)
..+|||+|+|+|++|.||+..+
T Consensus 102 f~LPgEaQ~IdRile~Fa~ry~ 123 (203)
T 1r8s_E 102 FRLPGKAQKIDRMMEAFAQRYC 123 (203)
T ss_dssp SCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 6178716899999999999999
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=26.45 Aligned_cols=271 Identities=8% Similarity=0.027 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHCCC--C
Q ss_conf 999999999993129349999999999985689999646903799---99999943899027999999999997038--8
Q 000401 8 ESDLRALSAEARRRYPAVKDGAEHAILKLRSLSSPSELAQSEDIL---RIFLMACEVRTVKLSVIGLSCIQKLISHD--A 82 (1565)
Q Consensus 8 ~~dL~~L~~EskRK~~~ik~A~e~al~~Lk~~~~~~~l~~~~~~l---~PfllaC~skn~Kl~~iaL~~lqkLis~~--~ 82 (1565)
..+|..+...+---++++|.++|+.|..++. .+++. .-.+....+.+..+-..|...+.+.+... .
T Consensus 12 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~---------~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~ 82 (852)
T 4fdd_A 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQ---------YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN 82 (852)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT---------SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999998739498999999999999870---------9988999999985668898679999999999989874477
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89522999999998031889705899999999998827997667389999999865201345791889999999999999
Q 000401 83 VAPSALKEIFSMLKNHADMVDESVQLKTLQTILIIFQSRLHPENEDNMAQALGICLRLLENNRSSDSVRNTAAATFRQAV 162 (1565)
Q Consensus 83 i~~~~l~~Il~~L~~~~~~~~e~VqLKILQ~L~~l~~s~~~~i~g~~L~~~L~~C~~L~~~sks~~~v~~TA~ATL~QlV 162 (1565)
++++....|-+.+.++....+..|+-++-+++-.+........-.+++...+..+ .+.++ .++..|-.+|..++
T Consensus 83 ~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l-----~~~~~-~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 83 FPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLL-----DSEDY-NTCEGAFGALQKIC 156 (852)
T ss_dssp CCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHH-----SCSSH-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----CCCCH-HHHHHHHHHHHHHH
T ss_conf 9999999999999998749989999999999999998648135689999999987-----09998-99999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99984010001588987888987544555567765556888754333467898641001004577889999999972069
Q 000401 163 ALIFDHVVRAESLPMGKFGSGAHITRTNSVTGDVSRSINHSESLEHEFASEGPSLRRETLTKAGKLGLRLLEDLTALAAG 242 (1565)
Q Consensus 163 ~~VF~Rv~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~da~~iF~dLC~L~~~ 242 (1565)
...-+..... . . ... .-.++..|..+...
T Consensus 157 ~~~~~~~~~~-~---------------------~--------------------------~~~---~~~il~~l~~~l~~ 185 (852)
T 4fdd_A 157 EDSAEILDSD-V---------------------L--------------------------DRP---LNIMIPKFLQFFKH 185 (852)
T ss_dssp HHHTTHHHHC-S---------------------S--------------------------SSC---HHHHHHHHTTTTTC
T ss_pred HHHHHHHCHH-H---------------------H--------------------------CCH---HHHHHHHHHHHHCC
T ss_conf 9857875634-3---------------------1--------------------------332---99999999998567
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99875455512468559999999970821113687779999999899999850005568788895218999999999999
Q 000401 243 GSASWLHVNTLQRTFVLDILEFILSNHVSLFRMLVSYEQVLRHQICSLLMTSLRTNVENEGETGEPYFRRLVLRSVAHII 322 (1565)
Q Consensus 243 e~~~~l~~~~l~k~~~LELIesvL~n~~~~F~~h~el~~lLr~~lcplLik~ls~n~~~~~~~~~~~F~~~~lRi~~~li 322 (1565)
. ..--|..+++.+..++...+.. +...+ ..+.+.+++.++. +.+......++++..+.
T Consensus 186 ~-------~~~vR~~A~~aL~~~~~~~~~~------~~~~~-~~~l~~l~~~~~d--------~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 186 S-------SPKIRSHAVACVNQFIISRTQA------LMLHI-DSFIENLFALAGD--------EEPEVRKNVCRALVMLL 243 (852)
T ss_dssp S-------SHHHHHHHHHHHHTTTTTTCHH------HHTSH-HHHHHHHHHHHTC--------CCHHHHHHHHHHHHHHH
T ss_pred C-------CHHHHHHHHHHHHHHHHCCCHH------HHHHH-HHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHH
T ss_conf 9-------7899999999999998646387------99889-9999999987179--------97789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCH
Q ss_conf 999985698999999999985068986889999999999973284
Q 000401 323 RLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEA 367 (1565)
Q Consensus 323 ~~~~~~L~~E~EvfLs~Li~~L~~~~~~w~r~L~LEvl~~l~~dp 367 (1565)
..+...+....+-++..+++.+.. .....|..++|.+..++..+
T Consensus 244 ~~~~~~~~~~l~~l~~~l~~~~~~-~~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 244 EVRMDRLLPHMHNIVEYMLQRTQD-QDENVALEACEFWLTLAEQP 287 (852)
T ss_dssp HHCHHHHGGGHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHTTST
T ss_pred HHCHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCH
T ss_conf 857798998899999999987069-96899999999999986036
No 4
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=1.00 E-value=1 Score=26.00 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 45876012799999999878867
Q 000401 438 VLVASEAHSITLAIEGLLGVVFT 460 (1565)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~~i~s 460 (1565)
..+|||+|+|+|++|.||+..+.
T Consensus 113 f~LPGEaQ~IdRile~Fa~rY~~ 135 (230)
T 1ku1_A 113 FRLPGESQQIERIIEAFSSAYCE 135 (230)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 85885199999999999999998
No 5
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=1.00 E-value=1 Score=24.42 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4587601279999999987886
Q 000401 438 VLVASEAHSITLAIEGLLGVVF 459 (1565)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~~i~ 459 (1565)
..+|||+|+|+|+||.|++..+
T Consensus 100 frLPGEaQ~IDRile~FA~rY~ 121 (356)
T 1xsz_A 100 FKLPGEAQKIDRLVQSFSGAYF 121 (356)
T ss_dssp SCBCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8488508899999999999999
No 6
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=1.00 E-value=1 Score=23.74 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4587601279999999987886
Q 000401 438 VLVASEAHSITLAIEGLLGVVF 459 (1565)
Q Consensus 438 ~ll~~Ea~~I~~~~e~la~~i~ 459 (1565)
+.+|||+|+|+|++|.||+.++
T Consensus 104 f~lpgE~q~idril~~Fa~~y~ 125 (347)
T 2r09_A 104 FRLPGEAQKIDRMMEAFASRYC 125 (347)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8689726789999999999999
No 7
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=23.08 Aligned_cols=115 Identities=14% Similarity=-0.039 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 43999999998620499489999999999999841369999668999997848856986322101478200012233667
Q 000401 884 KLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTR 963 (1565)
Q Consensus 884 ~LW~~LL~~L~~l~~D~R~EVRn~AiqTLfril~~~G~~ls~~~W~~i~~~VlFPLl~~i~~~~~~~s~~~~~~~~~~~~ 963 (1565)
.++-.++-.|.+...|+...||..|..+|-.++...+ +.. +.|.+..... .
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-----------~~~-ll~~l~~~l~---~-------------- 144 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-----------LEA-QQESIVESLS---N-------------- 144 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-----------HHH-HHHHHHHHTT---C--------------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-----------HHH-HHHHHHHHHC---C--------------
T ss_conf 8999999999999768988999999999999997289-----------999-9999999884---8--------------
Q ss_pred CCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 88641111134553223319999999999899999632000115433599999999999999808935899999999999
Q 000401 964 GGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQT 1043 (1565)
Q Consensus 964 ~~~~~~~~v~~sr~~~~k~W~ET~vlal~gl~~lf~~~~~~L~~~~~f~~~W~~lL~~l~~~~~~~~~eis~a~~~~L~~ 1043 (1565)
+.| ..+..++.-+..++..+-.. ..+...+..++.++..++...+.++-.++++++..
T Consensus 145 -----------------~~~-~vr~~~l~~l~~~l~~~~~~----~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~ 202 (242)
T 2qk2_A 145 -----------------KNP-SVKSETALFIARALTRTQPT----ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGT 202 (242)
T ss_dssp -----------------SCH-HHHHHHHHHHHHHHTTCCGG----GCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred -----------------CCH-HHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf -----------------983-99999999999999871887----76689999999999988469985899999999999
Q ss_pred HHHHHC
Q ss_conf 997313
Q 000401 1044 TVLSHS 1049 (1565)
Q Consensus 1044 lL~~~~ 1049 (1565)
+....+
T Consensus 203 l~~~vg 208 (242)
T 2qk2_A 203 LIKLMG 208 (242)
T ss_dssp HHHHHC
T ss_pred HHHHCC
T ss_conf 999849
No 8
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=1.00 E-value=1 Score=20.94 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 4899999999999998
Q 000401 901 RPEVRNSAIRTLFQTL 916 (1565)
Q Consensus 901 R~EVRn~AiqTLfril 916 (1565)
.++||..|+.+|-.+.
T Consensus 342 ~~~v~~~A~~~L~nl~ 357 (528)
T 4b8j_A 342 KKSIKKEACWTISNIT 357 (528)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 6889999999999997
No 9
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=20.03 Aligned_cols=34 Identities=9% Similarity=0.264 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998089--358999999999999973
Q 000401 1014 GWESLLHFVKNSILNG--SKEVSLAAINCLQTTVLS 1047 (1565)
Q Consensus 1014 ~W~~lL~~l~~~~~~~--~~eis~a~~~~L~~lL~~ 1047 (1565)
.|..++..+..++..+ +..+...++.+|..+...
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 269999999998626788789999999999999981
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=19.84 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=49.8
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 86204994899999999999998413699996689999978488569863221014782000122336678864111113
Q 000401 894 KKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIH 973 (1565)
Q Consensus 894 ~~l~~D~R~EVRn~AiqTLfril~~~G~~ls~~~W~~i~~~VlFPLl~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~v~ 973 (1565)
.....|+..+||..|+.++-.+...+|. .|. ...++|.+..+.. +
T Consensus 447 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-----~~~---~~~llp~l~~~~~-------~-------------------- 491 (588)
T 1b3u_A 447 MAWLVDHVYAIREAATSNLKKLVEKFGK-----EWA---HATIIPKVLAMSG-------D-------------------- 491 (588)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHHHHCH-----HHH---HHHTHHHHHHTTT-------C--------------------
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCC-----HHH---HHHHHHHHHHHHH-------C--------------------
T ss_conf 9882598199999999999999999684-----457---8889999999831-------8--------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 45532233199999999998999996320001154335999999999999998089358999999999999973
Q 000401 974 HSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLS 1047 (1565)
Q Consensus 974 ~sr~~~~k~W~ET~vlal~gl~~lf~~~~~~L~~~~~f~~~W~~lL~~l~~~~~~~~~eis~a~~~~L~~lL~~ 1047 (1565)
.+ ..--.+...++..+++.+... ..+..++..+.+++.....++-..+.++|..+...
T Consensus 492 --~~---~~~R~~a~~~l~~l~~~~~~~-----------~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 492 --PN---YLHRMTTLFCINVLSEVCGQD-----------ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp --SC---HHHHHHHHHHHHHHHHHHHHH-----------HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred --CC---HHHHHHHHHHHHHHHHHCCHH-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf --98---799999999999999766989-----------99999999998667899862799999999999998
Done!