Query 000402
Match_columns 1565
No_of_seqs 248 out of 1172
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:20:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1879 UDP-glucose:glycoprote 100.0 2E-287 4E-292 2606.1 105.2 1368 28-1559 16-1400(1470)
2 PF06427 UDP-g_GGTase: UDP-glu 100.0 1.2E-53 2.7E-58 469.1 19.6 205 1012-1217 1-211 (211)
3 cd06432 GT8_HUGT1_C_like The C 100.0 1.2E-42 2.5E-47 395.8 18.3 219 1339-1559 1-219 (248)
4 cd00505 Glyco_transf_8 Members 100.0 2.6E-32 5.7E-37 311.9 16.8 214 1339-1563 1-217 (246)
5 PRK15171 lipopolysaccharide 1, 100.0 3.1E-30 6.7E-35 305.8 18.3 208 1337-1559 24-238 (334)
6 cd06430 GT8_like_2 GT8_like_2 100.0 6.3E-30 1.4E-34 294.1 18.8 214 1339-1565 1-234 (304)
7 cd04194 GT8_A4GalT_like A4GalT 100.0 1.1E-28 2.4E-33 282.3 18.3 208 1339-1563 1-213 (248)
8 cd06431 GT8_LARGE_C LARGE cata 100.0 5.8E-28 1.2E-32 279.5 18.1 211 1339-1561 1-223 (280)
9 COG1442 RfaJ Lipopolysaccharid 99.9 1.1E-27 2.4E-32 278.7 17.1 210 1338-1563 2-216 (325)
10 cd06429 GT8_like_1 GT8_like_1 99.9 1.8E-26 3.8E-31 263.6 16.3 188 1339-1560 1-212 (257)
11 PLN02718 Probable galacturonos 99.9 4.3E-25 9.3E-30 267.9 14.4 215 1335-1561 310-546 (603)
12 PLN02523 galacturonosyltransfe 99.9 3.2E-24 7E-29 257.3 15.6 214 1336-1560 245-501 (559)
13 PF01501 Glyco_transf_8: Glyco 99.9 5.6E-22 1.2E-26 225.2 12.0 208 1340-1562 1-218 (250)
14 PLN02870 Probable galacturonos 99.9 1E-21 2.2E-26 235.4 12.6 213 1336-1559 203-473 (533)
15 PLN02742 Probable galacturonos 99.9 2.5E-21 5.3E-26 232.7 15.0 215 1336-1560 224-477 (534)
16 PLN02659 Probable galacturonos 99.9 1.2E-21 2.7E-26 234.8 11.9 214 1336-1560 204-475 (534)
17 PLN02769 Probable galacturonos 99.9 1.8E-21 3.8E-26 237.6 12.9 210 1336-1559 327-571 (629)
18 PLN02829 Probable galacturonos 99.8 2.8E-21 6.1E-26 234.0 13.4 213 1336-1560 328-581 (639)
19 PLN02867 Probable galacturonos 99.8 1.1E-20 2.4E-25 227.7 13.4 212 1336-1559 208-475 (535)
20 PLN02910 polygalacturonate 4-a 99.8 2.7E-20 6E-25 224.8 12.9 214 1336-1561 342-600 (657)
21 PLN00176 galactinol synthase 99.7 8.2E-16 1.8E-20 180.4 15.9 195 1344-1559 29-236 (333)
22 cd02537 GT8_Glycogenin Glycoge 99.7 6.6E-16 1.4E-20 176.4 13.9 179 1342-1562 4-185 (240)
23 cd06914 GT8_GNT1 GNT1 is a fun 99.3 1E-11 2.3E-16 143.1 14.6 175 1344-1559 6-191 (278)
24 KOG1879 UDP-glucose:glycoprote 96.8 0.65 1.4E-05 62.5 29.8 183 677-863 336-527 (1470)
25 PF11051 Mannosyl_trans3: Mann 94.7 0.059 1.3E-06 63.3 7.1 109 1341-1457 4-114 (271)
26 cd03019 DsbA_DsbA DsbA family, 92.8 4.7 0.0001 43.6 17.1 144 531-712 14-158 (178)
27 COG5597 Alpha-N-acetylglucosam 92.4 0.066 1.4E-06 61.8 1.9 51 1414-1468 150-200 (368)
28 PF13462 Thioredoxin_4: Thiore 89.4 9.3 0.0002 40.5 14.9 134 534-711 14-150 (162)
29 cd03023 DsbA_Com1_like DsbA fa 87.9 13 0.00028 38.8 14.6 136 534-711 7-143 (154)
30 PF13620 CarboxypepD_reg: Carb 84.6 3.3 7.2E-05 39.0 7.2 52 1182-1234 2-54 (82)
31 cd02515 Glyco_transf_6 Glycosy 83.2 19 0.00041 42.2 13.6 197 1335-1554 32-240 (271)
32 PF13462 Thioredoxin_4: Thiore 76.0 6.3 0.00014 41.8 6.7 50 218-268 4-57 (162)
33 PF03407 Nucleotid_trans: Nucl 74.6 6.6 0.00014 44.2 6.7 109 1421-1555 54-169 (212)
34 PF13715 DUF4480: Domain of un 74.4 32 0.00069 32.9 10.4 47 1182-1234 2-50 (88)
35 cd03019 DsbA_DsbA DsbA family, 74.4 1.3E+02 0.0028 32.3 16.8 144 797-960 14-157 (178)
36 PF07210 DUF1416: Protein of u 72.8 20 0.00043 34.6 8.0 54 1179-1234 7-60 (85)
37 cd00761 Glyco_tranf_GTA_type G 72.5 55 0.0012 32.8 12.4 88 1351-1452 9-96 (156)
38 PF03414 Glyco_transf_6: Glyco 70.9 30 0.00065 41.7 11.0 202 1335-1554 97-305 (337)
39 PF00535 Glycos_transf_2: Glyc 69.0 25 0.00055 36.3 9.2 92 1351-1456 10-102 (169)
40 PF01323 DSBA: DSBA-like thior 68.5 1.5E+02 0.0032 32.4 15.5 156 535-706 1-176 (193)
41 PF08400 phage_tail_N: Prophag 67.0 20 0.00043 37.9 7.4 59 1179-1237 2-65 (134)
42 KOG1948 Metalloproteinase-rela 55.7 69 0.0015 42.7 10.7 98 1136-1238 78-176 (1165)
43 cd03023 DsbA_Com1_like DsbA fa 53.3 26 0.00055 36.6 5.8 43 226-268 4-47 (154)
44 cd03025 DsbA_FrnE_like DsbA fa 53.2 2E+02 0.0043 31.5 13.1 156 534-704 1-176 (193)
45 cd04196 GT_2_like_d Subfamily 47.0 1.7E+02 0.0036 32.0 11.3 95 1349-1456 8-103 (214)
46 cd06423 CESA_like CESA_like is 46.8 1.5E+02 0.0033 30.4 10.5 92 1348-1453 6-99 (180)
47 PRK10954 periplasmic protein d 44.5 3.4E+02 0.0074 30.6 13.3 45 665-710 136-180 (207)
48 PF13743 Thioredoxin_5: Thiore 41.1 2.5E+02 0.0055 30.9 11.3 149 538-704 2-155 (176)
49 cd03022 DsbA_HCCA_Iso DsbA fam 36.8 2.1E+02 0.0045 31.2 10.0 97 602-711 85-181 (192)
50 cd04186 GT_2_like_c Subfamily 36.4 3E+02 0.0065 28.4 10.7 88 1351-1455 9-97 (166)
51 PRK11204 N-glycosyltransferase 34.1 2.7E+02 0.0059 34.6 11.5 101 1337-1454 54-156 (420)
52 cd04185 GT_2_like_b Subfamily 32.8 1.8E+02 0.0038 31.8 8.6 94 1349-1455 7-102 (202)
53 cd02520 Glucosylceramide_synth 29.3 3.9E+02 0.0083 29.3 10.5 97 1348-1455 10-109 (196)
54 PRK15036 hydroxyisourate hydro 28.8 1E+02 0.0023 32.8 5.5 54 1181-1234 28-89 (137)
55 cd06439 CESA_like_1 CESA_like_ 28.3 5.6E+02 0.012 28.9 12.0 101 1337-1456 29-133 (251)
56 cd04187 DPM1_like_bac Bacteria 26.6 5.9E+02 0.013 27.1 11.2 147 1351-1512 9-163 (181)
57 cd04195 GT2_AmsE_like GT2_AmsE 25.4 6.3E+02 0.014 27.2 11.4 83 1352-1449 13-96 (201)
58 PRK06437 hypothetical protein; 24.4 64 0.0014 29.9 2.6 21 938-958 27-47 (67)
59 cd02972 DsbA_family DsbA famil 24.3 91 0.002 29.2 3.9 39 231-269 1-41 (98)
60 cd03866 M14_CPM Peptidase M14 24.1 1.4E+02 0.0031 37.1 6.4 53 1179-1234 294-346 (376)
61 PRK10877 protein disulfide iso 24.0 4.3E+02 0.0093 30.6 9.9 38 534-571 109-146 (232)
62 cd06435 CESA_NdvC_like NdvC_li 22.8 7.3E+02 0.016 27.7 11.5 93 1351-1454 11-106 (236)
63 PF13641 Glyco_tranf_2_3: Glyc 22.4 1.1E+02 0.0023 34.2 4.6 95 1349-1454 11-108 (228)
64 PF03452 Anp1: Anp1; InterPro 21.9 9.6E+02 0.021 28.6 12.2 130 1335-1470 23-177 (269)
65 cd03863 M14_CPD_II The second 21.5 2.3E+02 0.0049 35.3 7.4 51 1179-1234 296-347 (375)
66 PRK11657 dsbG disulfide isomer 21.5 1.7E+02 0.0036 34.3 6.0 40 225-264 115-154 (251)
67 cd04192 GT_2_like_e Subfamily 21.2 4.4E+02 0.0095 29.0 9.2 97 1348-1455 6-105 (229)
68 cd06420 GT2_Chondriotin_Pol_N 21.0 7.9E+02 0.017 25.9 10.9 96 1349-1456 7-103 (182)
69 PF03666 NPR3: Nitrogen Permea 20.4 4E+02 0.0086 34.1 9.3 34 668-705 187-220 (452)
70 PRK10954 periplasmic protein d 20.3 3.4E+02 0.0073 30.6 8.0 52 902-958 128-179 (207)
71 cd06434 GT2_HAS Hyaluronan syn 20.1 8.1E+02 0.018 27.1 11.2 95 1339-1454 2-99 (235)
72 PRK05454 glucosyltransferase M 20.1 5.4E+02 0.012 34.8 10.9 122 1336-1467 123-255 (691)
No 1
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-287 Score=2606.11 Aligned_cols=1368 Identities=43% Similarity=0.697 Sum_probs=1216.9
Q ss_pred hcccCCCceEEEEEecCCCCchhHHHHHHHhhhcchhhHHHHHHHcccCCCCCCCccHHHHHHHHHHHHhhcCChhhhhh
Q 000402 28 AQIQKPKNVQVAVRAKWSGTPLLLEAGELLASERKDLFWEFIEKWLHSEENDADSRTAKDCLKRIVRHGSSLLSESLASL 107 (1565)
Q Consensus 28 ~~~~~s~~V~V~L~A~W~~tPlllE~~E~~A~e~~~~f~~~ld~i~~~~~~~~~~~tdk~~Y~~~l~~~~~~L~~~~~~~ 107 (1565)
.+...+|+|+|.+.|+|++||+++|++|++|+|++.+||.|++.+.+..+...+..||+.+|+.++++|+.+|+++++++
T Consensus 16 ~~~a~s~~v~~~l~akw~~t~ll~e~sE~l~~e~~elFw~f~~~v~~l~~~~~e~~s~~~~y~~~~~~a~~~ls~~~~~l 95 (1470)
T KOG1879|consen 16 GARAASKNVTVRLAAKWSSTPLLLEASELLAEESNELFWNFVNAVTGLDDDSNETDSDENKYNLISKVAGQVLSPEEVSL 95 (1470)
T ss_pred hhhhcCCceeEEEecCCCCccHHHHHHHHHHhhhhHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhcChHHHHH
Confidence 34567789999999999999999999999999999999999999999875555678999999999999999999999999
Q ss_pred HhHhhhcccchhHHHHHHHHHHhhcCCCCCCCCCccccccCCCcchhhhhhcccccccccCCCCCCCCCcceEEEeCCeE
Q 000402 108 FEFSLTLRSASPRLVLYRQLAEESLSSFPPFDDSNLKNEVGGASEANEKLETKKSDSLLVGVNPKSPGGKCCWVDTGGAL 187 (1565)
Q Consensus 108 lk~~LslR~~SPrIEa~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wv~~~g~~ 187 (1565)
|+|+||+|+||||||||+|++.+. +|++|.+|+++||+.
T Consensus 96 L~f~lalrs~spriQ~~~qia~e~-----------------------------------------~~~~c~sf~v~~~~~ 134 (1470)
T KOG1879|consen 96 LKFSLALRSYSPRIQAFQQIAAEE-----------------------------------------PPEGCDSFFVLGGEL 134 (1470)
T ss_pred HHHHHHhccccHHHHHHHHHHhhc-----------------------------------------CCCCCceEEEECCee
Confidence 999999999999999999999887 125688999999999
Q ss_pred ecChHHHHHhhcCCCCcCCCCCCCCCcCCcceeccCCCCCCceEEEEeecCchhHHHHHHHHHHHHHcCCeeEEEeecCC
Q 000402 188 FLEVSELLMWLRSPSELTGESFQQPELFDFDHIHAESSISSRTAILYGALGSDCFKEFHINLVQAAKEGKVMYVVRPVLP 267 (1565)
Q Consensus 188 ~C~~~~l~~l~~~~~~~~~~~~~~~~~~~fDhv~~~s~~~~p~vILYg~i~s~~F~~fh~~L~~~a~~gki~YV~R~~~~ 267 (1565)
+|.++||++++.++. .....+.++.||||+|+++++.|+|||||++|+.+|..||+.|.++|++||++||+||+++
T Consensus 135 ~c~~~dL~k~l~~~~----~~~s~~~~~~~dhv~p~s~~~~p~~ilYge~gt~~f~~Fh~~l~k~a~~gk~~yv~Rh~~~ 210 (1470)
T KOG1879|consen 135 TCKFDDLQKLLKKAL----TNQSDPKLFSFDHVVPGSNTESPVAILYGELGTIDFRNFHKLLEKLAKNGKINYVFRHFLR 210 (1470)
T ss_pred eecHHHHHHHhhhhh----hcccCcccccccceeccCCCCCcEEEEEcccchHhHHHHHHHHHHHHhcCCeeEEEEeccc
Confidence 999999999987653 1222579999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCccCCCCCCCCccccceeeEEEEeeccccccccccccccccCCCCCCcccccccccchhhhhhccCccchhhh
Q 000402 268 SGCEANVGNCGAVGAKDSLNLGGYGVELALKNMEYKAIDDSMIKEGVTLEDPRTEDLSQEVRGFVFSKLLERKPDLTSEI 347 (1565)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~l~LsGYGVELalK~tEYk~iDD~~v~~~~~~~~~~~~~~~~~v~gf~f~~L~~~~P~l~~~L 347 (1565)
.+ .++|++|+||||||+||+|||||+||+.++... .+++. .+|+||+|++|+++||+++.+|
T Consensus 211 ~~------------~~~p~~LsGyGVElaLK~teYka~Ddss~~~~~-----~~e~~-~dv~gf~f~~lk~~~~~l~~~l 272 (1470)
T KOG1879|consen 211 KK------------DSRPVYLSGYGVELALKNTEYKAVDDSSVKKLN-----VEEDL-NDVQGFNFGKLKDRHPDLRGAL 272 (1470)
T ss_pred CC------------CCCceeeecceeEEeecCcceeecccccccccc-----cccch-hhhhhhhhhhccccChHHHhHH
Confidence 74 678999999999999999999999999887321 22232 6799999999999999999999
Q ss_pred HHHHHhhhccccCCCCChhhhhcccHHHHHHHhcCCChHHHHHHHHhccchhhhhhhcccCChhHHHHHHHhhhc-----
Q 000402 348 MSFRDYLLSSTTSETLEVWELKDLGHQTAQRIVHASDPLQSMQEISQNFPSVVSSLSRMKLNDSIKDEIVANQRY----- 422 (1565)
Q Consensus 348 ~~fr~~L~~~~e~~pLk~wel~dLglqAaq~I~~s~~pL~~L~~lsQNFP~~A~~Ls~~~v~~~~~~ei~~Nq~~----- 422 (1565)
+.||.||++++|+.|||+||+||||+||||+|+++.++|+.|++|+||||++|++|++++|++++++|+++||+.
T Consensus 273 ~~~r~~lles~el~~Lk~welqdL~~qaaq~i~~~td~L~~mk~i~qNFP~~Ar~Ls~~~Vn~~lr~ei~~nq~~~~~~~ 352 (1470)
T KOG1879|consen 273 ESFRLHLLESDELAPLKVWELQDLGFQAAQKIKSITDALQFMKEISQNFPTHARSLSKQSVNEDLRTEIEENQSKLEAKG 352 (1470)
T ss_pred HHHHHhccCccccccccHHHHhhhhHHHHHHHhhhHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHHhhhhhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCCceEEEEcCcccCCCCCCHhHHHHHHHHHHHHHhHhhhcCCChHHHHHhhccCCC-CCCCceEEEecCCCeeEeccc
Q 000402 423 MPPGKSLMALNGALINIEDIDLYLLIDLVHQELSLADQFSKLKIPRTITQKLLSTVPP-AESSMFRVDFRSTHVQYLNNL 501 (1565)
Q Consensus 423 ~~~G~~~L~ING~~i~~~~ld~FsLl~~Lr~E~~~~~~L~~lGl~~~~a~~LL~~~~~-~~~~~~r~D~r~~~IiwlNDI 501 (1565)
++||.++|||||+.++.+++|+|+|+++|++|.+++++|+++|+.+..+.++|+.... .+.+++++|+|+.+|+|+|||
T Consensus 353 v~~g~~~L~INGl~~di~~~DlfsLld~lk~E~~~~~~f~~lgi~~~~l~~~l~l~~~~~~~~~~~~Dir~~~v~~vNdl 432 (1470)
T KOG1879|consen 353 VPPGDNALFINGLNLDIDSLDLFSLLDLLKQEKKMLNGFHNLGIDGEFLSKLLKLDLSKSEKQEYAVDIRSEAVIWVNDL 432 (1470)
T ss_pred CCCCcceeEecccccCcccccHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhccccCcccccceeeecccccceeeccc
Confidence 8999999999999999999999999999999999999999999999999999985433 236789999999999999999
Q ss_pred cCchhhhhchhhHHHhhccCCCCCcccccccccceEEEEcCCCcccHHHHHHHHHHHhcccceEEEEEeeecccccchhc
Q 000402 502 EEDAMYKRWRSNINEILMPVFPGQLRYIRKNLFHAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILYSSKFIKSIEI 581 (1565)
Q Consensus 502 EkD~~Y~~w~~sl~~ll~p~~PGqlp~iRrNl~nlVfviDps~~~~~~~l~~l~~~~~~g~PiR~GlVp~~~~~~~~~~~ 581 (1565)
|+|++|.+||+|++.||+|+||||||+|||||||+||||||+++++++++..+.+|+.|++|+|||+||+.++ .++
T Consensus 433 EsD~~Y~~w~~Svq~lL~P~~PG~lr~IrkNl~nlV~vIDpa~~~~~~~l~~~~~f~s~~~P~R~G~v~~~nd----~~~ 508 (1470)
T KOG1879|consen 433 ESDPQYDRWPSSVQLLLKPTFPGQLRPIRKNLFNLVFVIDPATPEDLEFLKTARNFVSHQIPVRIGFVFIAND----DDE 508 (1470)
T ss_pred ccchhhcchhHHHHHHhCCCCCCcchHHHhhheeEEEEecCCCccchHHHHHHHHHhcCCCceEEEEEEEecC----Ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 111
Q ss_pred cCCCCCCCCccCCCCCCcchhHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhhHhHHHhhccCCC
Q 000402 582 NGGELHSPVAEDDSPVNEDISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKA 661 (1565)
Q Consensus 582 ~~g~~~~~~~~~~~~~~~~~s~~iar~f~~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~ 661 (1565)
+ +..|.++++.|+|+||++..|...|+.||.+++...+. ...+..+++...|.+ .++.+
T Consensus 509 -d-------------~~~d~g~av~~af~yi~~~~d~~~Alk~l~~~~~~~~~------~~~~~~e~v~~~~~~-~~~~~ 567 (1470)
T KOG1879|consen 509 -D-------------GVTDLGVAVLRAFNYISEESDNLTALKFLTNIYSDVRS------DEYVLVEHVKGVFEN-TLPNA 567 (1470)
T ss_pred -c-------------chhhHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhcc------cchhHHHhhhHHHHh-hcccc
Confidence 2 23588999999999999999999999999999765543 233447778877744 34332
Q ss_pred CCCChhhhhhhhccchhhHHHHHHHHHHHHhCCCCCCccEEEcceeccCch------HHHHHHHHHHHHHHHHHHHcccc
Q 000402 662 KTPPQDMLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSESSE------EALLNAMNDELQRIQEQVYYGNI 735 (1565)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Rlgi~~~~p~vlvNG~~~~~~~------~~l~~~i~~el~~lq~~v~~g~l 735 (1565)
...+.++.++.|+..++++.+|+.++||+. .|+|++||+|++..+ ..+++.|++++.++|++||.|.+
T Consensus 568 -----~~~~il~~~s~~d~~~~~~~~fv~~lGl~~-~p~vL~NG~i~~~~~~~~~~e~~i~~~i~~~t~~iQ~av~~G~l 641 (1470)
T KOG1879|consen 568 -----KKDDILGIDSTYDEGRKAGFSFVQELGLDS-LPSVLLNGEIFDHESNAWDLEESILQEIMKDTPFIQRAVYEGKL 641 (1470)
T ss_pred -----chhhhhccccchhhcchHHHHHHHHhCCCc-cCeeeECCeeccccccccchHHHHHHHHHhhhHHHHHHHHcCCC
Confidence 123567888999999999999999999955 899999999999776 38999999999999999999999
Q ss_pred CChhhHHHHHHhc-cccCccCceeecCCCCCCeEeecccccccchhHhhcCccccCCCCCCCCcceEEEEEeeCCCHhHH
Q 000402 736 NSYTDVLEKVLSE-SGINRYNPQIITDAKVKPKFISLASSFLGRETELKDINYLHSPETVDDVKPVTHLLAVDVTSKKGM 814 (1565)
Q Consensus 736 ~d~~~~~~~~l~~-~~~~r~n~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lv~D~~s~~g~ 814 (1565)
+|+.++++++|.+ ++++|.|++|++..+.-.++..+...+.+.+.+++++.|++.+ +.....++|+|+|+||++++|+
T Consensus 642 ~d~~~~~d~ll~~~~v~~R~N~~i~~~~~~~~~v~s~l~~~~k~~~~~~~~~Yl~~~-~~~~~~~vT~wlvaDf~~~~gr 720 (1470)
T KOG1879|consen 642 EDDQNVVDFLLEQKSVLPRINKRILSGSKFLDSVVSILSSTDKSAVLLKNVNYLTKK-TEESNLPVTIWLVADFESPSGR 720 (1470)
T ss_pred ccchHHHHHHHhCccccccccccccccccchhhHHhhhcchhhhhHHHhhccccccC-chhhccceEEEEEcccCChhHH
Confidence 9999999999998 9999999999984433344555445556778899999999765 4556778999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEEEcCCCCCCCchhHHHHHHHHhhhccchhhhHHHHHHHHhhhhhhhhhhcccccccchH
Q 000402 815 KLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCSFYERTYLLASSATADSTQ 894 (1565)
Q Consensus 815 ~~l~~al~~~~~~~~~~Rv~~i~n~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 894 (1565)
++|.+||+++ +++.++||++|.||++........+++.|+|++.++..+.+......++.+ +..
T Consensus 721 klL~~al~~~-~~s~~~Ri~~I~np~s~~~~~~~s~~~~i~aal~~~~~~l~~e~~~~~~~~-------------~~~-- 784 (1470)
T KOG1879|consen 721 KLLTNALDYL-KSSKNARIGLIPNPSSESAEGSNSIKRPILAALLFLPAKLAKEEVASHLYK-------------GKN-- 784 (1470)
T ss_pred HHHHHHHHHH-hccccceEEEecCchhhhhcccccccchHHHHHhcCcHhhhHHHHHHHhhc-------------Ccc--
Confidence 9999999998 568899999999998744455667888888888776521111111111111 000
Q ss_pred HHHHHHHHHHhhcCCChHhHhhhcCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEEe-cCCCCCCCCHhhHHHH
Q 000402 895 AFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVT-FPIDESTFLSHDLSLL 973 (1565)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv~NGR~i-~~~~~~~f~~~Df~~L 973 (1565)
...++ ...+++|+.++... ....++.+|++.+|+.+|+++|+.|||+| |+..++.|.++||.+|
T Consensus 785 ----------~~~~i-~s~~e~~~~~~~~~----l~~~~~~~~~~vl~l~~~q~~Vv~Ngr~igpl~~~E~f~t~Df~lL 849 (1470)
T KOG1879|consen 785 ----------SDLSI-GSKFEKDLEKLLLF----LKKLHSFIVKEVLGLNSGQRAVVSNGRFIGPLSSSESFNTADFKLL 849 (1470)
T ss_pred ----------cccch-hHHHHHhhhhhhhh----HHhhhhHHHHhhhccCCCcceeeecCeEEEeccchhhhchhhHHHH
Confidence 00111 13456666544333 22346688999999999999999999999 7766799999999999
Q ss_pred HHHHHHhhhHHHHHHHHHhcccCCCCCCCccccccchhhhhhhhhhcccccccCCcccccccccccceeeEEeCC--CCc
Q 000402 974 ESVEFKHRIKHIWEIIEEVNWQETYPDIDPDMLTSKFVSDIILFVTSSMAMRDRSSESARFEILSAEYSAVVFNS--ENS 1051 (1565)
Q Consensus 974 ~~~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--~~~ 1051 (1565)
++++..++.++|..++++.. . .+.....++..|++.+....+.++..+.++..+..+|+++.+++ ..+
T Consensus 850 e~~~~~~~~~ki~~~~~~~~-~---------~v~~~~~sd~~~~v~~~~~t~~~s~~r~~~~~~~~~~s~v~~~~~~~~a 919 (1470)
T KOG1879|consen 850 ESMLFSNYSQKISNIIEESE-L---------DVSEDVFSDFLMKVAALMSTQDKSRPRMDFSFLKDEHSVVKFPPDENNA 919 (1470)
T ss_pred HHHhccccchhHHHHHHHhh-h---------cchhhhhhhhhhhhhcccccCCccccccchhhhcCCCceeecCCCCCCc
Confidence 99999999999998888753 1 12245567888898886666666667788888899999999866 456
Q ss_pred eEEEEEEecCCCcchhhHHHHHHHHhccCCCeEEEEEccCCCCCCcCccceeecccCCCcCCCCCCccccCCceeeccCC
Q 000402 1052 TIHIDAVIDPLSPTGQKLSSLLRVLQRYAQPSMRIVLNPMSSLVDIPLKNYYRYVVPTMDDFSNTDYSISGPKAFFANMP 1131 (1565)
Q Consensus 1052 ~~~v~~vvDPlse~aQk~~~ll~~l~~~~~v~i~i~LnP~~~l~elPlkrfYR~v~~~~~~F~~~g~~~~~p~a~F~~lP 1131 (1565)
.|+|+|||||||++||||+|||.+|+++.||+|||+|||+.+++|||||||||||+++++.|+++|....+ .|+|.+||
T Consensus 920 ~idv~aVlDPlsreaQkl~sll~~l~kl~n~~i~i~lnP~~~lse~PlkrfYRyV~~~e~~f~~~g~~~~~-~a~F~nlP 998 (1470)
T KOG1879|consen 920 TIDVLAVLDPLSREAQKLASLLEVLRKLTNVNIRIILNPKSKLSEMPLKRFYRYVLEAELSFSANGSDSDG-VAKFDNLP 998 (1470)
T ss_pred eEEEEEEecCCCHHHHHHHHHHHHHHHhcCcceEEEEcCchhhhhccHHHHHHhhcCcccccccCCccccc-eeeecCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999988877 89999999
Q ss_pred CCCceeEeccCCCCeEEeeecccccCCcccccccCCCcceEEEEEeeeEEEEEEeccCCC-CCCCCeEEEEecCCCCccc
Q 000402 1132 LSKTLTMNLDVPEPWLVEPVIAVHDLDNILLEKLGDTRTLQAVFELEALVLTGHCSEKDH-EPPQGLQLILGTKSTPHLV 1210 (1565)
Q Consensus 1132 ~~~llTl~~d~P~~WlV~~~~a~~DLDNI~L~~~~~~~~v~a~yeLe~iliEGha~d~~~-~pprGlqL~L~~~~~~~~~ 1210 (1565)
.++||||+||||++|+|+++.++||||||+|++.+ ++|+|+|||||||+||||+|..+ +|||||||+|||..+|+++
T Consensus 999 ~~~lltm~l~~pesWlVe~v~a~~DLdNI~Le~~~--~~v~A~yele~lLleG~c~d~~~g~pprGlql~Lgt~~~p~i~ 1076 (1470)
T KOG1879|consen 999 ASPLLTMNLDVPESWLVEAVRAIYDLDNIKLEDTS--SDVTAEYELEYLLLEGHCFDKVSGQPPRGLQLTLGTSANPHIV 1076 (1470)
T ss_pred cCceeEEeecCCCceEeeeccccccchheeeeccC--CchheeeehhhhhccceehhhccCCCCCceEEEeccCCCCeee
Confidence 99999999999999999999999999999999985 58999999999999999999877 9999999999999999999
Q ss_pred ceEEEecceeeeeeeCCceeEEEecCCCCCcceEEeecCCCCcCCCCccEEEEecCCCceEEEEEEecCCccccccccCC
Q 000402 1211 DTLVMANLGYWQMKVSPGVWYLQLAPGRSSELYVLKEDGNVNEDRSLSKRITINDLRGKVVHMEVVKKKGKENEKLLVSS 1290 (1565)
Q Consensus 1211 DTiVManlGYFQlka~PG~w~l~l~~GrS~diy~i~s~~~~~~~~~~~~~v~v~sf~g~~l~~rv~kk~g~e~~~vl~~~ 1290 (1565)
||||||||||||||||||+|.|+||+|||+++|.|.++. |..+..+..+|+|+||+|++|.|+|+|+||||.+++|.+.
T Consensus 1077 DTiVManlGYfQlKanPG~W~L~lr~G~S~d~y~i~s~d-g~~~~~~~~qvvidSf~gk~v~vkV~k~~g~e~edll~~~ 1155 (1470)
T KOG1879|consen 1077 DTIVMANLGYFQLKANPGAWILRLRDGRSSDIYQIVSHD-GTPDQSSDIQVVIDSFRGKVVKVKVSKKPGMEEEDLLSDE 1155 (1470)
T ss_pred eeEEEeccceeEEecCCcceEEEecCCCchhheeeeccc-CCCCcCCCceEEEecCCceEEEEEEeecCCcchhhhhcch
Confidence 999999999999999999999999999999999999855 4444567889999999999999999999999999999872
Q ss_pred cccccccccCCccccccccccccccCCcccchhhhhcccCcccccCCeeeEEEeecCcchHHHHHHHHHHHHHhCCCCeE
Q 000402 1291 DEDSHSQAEGHWNSNFLKWASGFIGGSEQSKKEKAAVDHGKVERHGKTINIFSIASGHLYERFLKIMILSVLKNTCRPVK 1370 (1565)
Q Consensus 1291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~InIf~va~d~~y~~~~~v~i~Svl~nt~~~v~ 1370 (1565)
.+.|.|+|+. +|.|+..+. .+++.++||||+||+||+|||++++||.||++||+++||
T Consensus 1156 ------~~~g~wns~k-----~f~~~~~~~-----------~~~~~~vINIFSvASGHLYERflrIMm~SvlknTktpVK 1213 (1470)
T KOG1879|consen 1156 ------KEEGFWNSIK-----SFTGGLAKS-----------MKKDKEVINIFSVASGHLYERFLRIMMLSVLKNTKTPVK 1213 (1470)
T ss_pred ------hhhhhhhhhh-----hhccccccc-----------ccCccceEEEEeeccccHHHHHHHHHHHHHHhCCCCcee
Confidence 2467899943 333332211 123445899999999999999999999999999999999
Q ss_pred EEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccccccccHHHHHHHHhhcccCCCCCCeEEEEeCceeeccCc
Q 000402 1371 FWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADM 1450 (1565)
Q Consensus 1371 F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl 1450 (1565)
||+|+++|||+||+.||+|+++|||+|++|+|+||.|||+|+++||++|+||+||||+|||++|+||||+|||+|||+||
T Consensus 1214 FWfLkNyLSPtFKe~iP~mA~eYnFeyElv~YkWPrWLhqQ~EKQRiiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL 1293 (1470)
T KOG1879|consen 1214 FWFLKNYLSPTFKESIPHMAKEYNFEYELVQYKWPRWLHQQTEKQRIIWGYKILFLDVLFPLNVDKVIFVDADQIVRADL 1293 (1470)
T ss_pred EEeehhhcChHHHHHHHHHHHHhCceEEEEEecCchhhhhhhhhhhhhhhhhhhhhhhccccccceEEEEcchHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCCCCcEEEeeccCCCCCCCCcccccchhhhcccCCCCceecchhheeHHHHHHhchHHHHHHHHHHhcCCCCC
Q 000402 1451 GELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNS 1530 (1565)
Q Consensus 1451 ~EL~~~dl~g~~~a~v~~~~~~~~m~g~~~w~~gyw~~~L~~~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~d~~s 1530 (1565)
.||+++||+|+|||++|+|++|.||+||||||+|||++||+|++||+|++|||||+|||+..+||++|.+||.||+||||
T Consensus 1294 ~EL~dfdl~GaPygYtPfCdsR~EMDGyRFWK~GYW~~hL~grkYHISALYVVDLkrFReiaAGDrLR~qYQ~LS~DPNS 1373 (1470)
T KOG1879|consen 1294 KELMDFDLGGAPYGYTPFCDSRREMDGYRFWKQGYWKKHLRGRKYHISALYVVDLKRFREIAAGDRLRGQYQALSQDPNS 1373 (1470)
T ss_pred HHHHhcccCCCccccCccccccccccchhHHhhhHHHHHhccCccccceeeeeeHHHHHhcccchHHHHHHHhhcCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCchhhhccCCCceeEccCCCCC
Q 000402 1531 LANLDQLGFWPASSQEPIPFFCARLTSPL 1559 (1565)
Q Consensus 1531 l~~~DQ~~DllN~~~~~~~I~~Lp~~~~~ 1559 (1565)
|+|+|| ||+|+|||+|||++||-.|=.
T Consensus 1374 LsNLDQ--DLPNnm~hqVpIkSLPqeWLW 1400 (1470)
T KOG1879|consen 1374 LSNLDQ--DLPNNMQHQVPIKSLPQEWLW 1400 (1470)
T ss_pred hhhccc--cccccceeecccccCCcchhh
Confidence 999999 999999999999999998743
No 2
>PF06427 UDP-g_GGTase: UDP-glucose:Glycoprotein Glucosyltransferase; InterPro: IPR009448 The N-terminal region of this group of proteins is required for correct folding of the ER UDP-Glc: glucosyltransferase. These proteins selectively reglucosylates unfolded glycoproteins, thus providing quality control for protein transport out of the ER. Unfolded, denatured glycoproteins are substantially better substrates for glucosylation by this enzyme than are the corresponding native proteins. This protein and transient glucosylation may be involved in monitoring and/or assisting the folding and assembly of newly made glycoproteins, in order to identify glycoproteins that need assistance in folding from chaperones; GO: 0003980 UDP-glucose:glycoprotein glucosyltransferase activity, 0006486 protein glycosylation
Probab=100.00 E-value=1.2e-53 Score=469.12 Aligned_cols=205 Identities=46% Similarity=0.743 Sum_probs=185.8
Q ss_pred hhhhhhhhcccccccCCc--ccccccccccceeeEEeC---CCCceEEEEEEecCCCcchhhHHHHHHHHhccCCCeEEE
Q 000402 1012 SDIILFVTSSMAMRDRSS--ESARFEILSAEYSAVVFN---SENSTIHIDAVIDPLSPTGQKLSSLLRVLQRYAQPSMRI 1086 (1565)
Q Consensus 1012 s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~---~~~~~~~v~~vvDPlse~aQk~~~ll~~l~~~~~v~i~i 1086 (1565)
||..|++++....+...+ ++..+..++..|+++.++ ++.+.++|+|||||+||.||||+|||++|+++.||+|+|
T Consensus 1 sD~~~~~~s~l~~~~~~~~~r~~~~~~~~~~~s~~~~~~~~~~~~~i~v~~vvDPlse~aQkl~sll~~l~~~~~v~i~i 80 (211)
T PF06427_consen 1 SDWFMLVSSLLSSSFHRDSSRVDRFDFLSDNHSSFEVGPKDNDESPIDVVAVVDPLSEEAQKLASLLSVLSELPFVNIRI 80 (211)
T ss_pred CcEEEEeeeeeeccccCccceeeehhccCCCceEEEecCCCCCCccEEEEEEECCCCHHHHHHHHHHHHHHhccCceEEE
Confidence 455667777665544433 344557888889999886 345689999999999999999999999999999999999
Q ss_pred EEccCCCCCCcCccceeecccCCCcCCCCCCccccCCceeeccCCCCCceeEeccCCCCeEEeeecccccCCcccccccC
Q 000402 1087 VLNPMSSLVDIPLKNYYRYVVPTMDDFSNTDYSISGPKAFFANMPLSKTLTMNLDVPEPWLVEPVIAVHDLDNILLEKLG 1166 (1565)
Q Consensus 1087 ~LnP~~~l~elPlkrfYR~v~~~~~~F~~~g~~~~~p~a~F~~lP~~~llTl~~d~P~~WlV~~~~a~~DLDNI~L~~~~ 1166 (1565)
+|||+.+++|+|||||||||+++++.||++|.++. |.|.|++||.+++||++||+|++|+|+|++|.||||||+|++++
T Consensus 81 ~LnP~~~~~elPlkrFYR~v~~~~~~F~~~G~~~~-p~a~F~~lP~~~llTl~~d~P~sW~V~~~~a~~DLDNI~l~~~~ 159 (211)
T PF06427_consen 81 LLNPTSKLSELPLKRFYRYVLPSEPQFDADGRLIP-PSAVFSNLPSSPLLTLGMDVPESWLVEPKEAVYDLDNIKLSDLS 159 (211)
T ss_pred EECCccccCcceeeeEEeecCCcccccCCCCCccC-ceeEEecCcCCceEEecCCCCCceEEEEeecCcCCCceecccCC
Confidence 99999999999999999999999999999999887 99999999999999999999999999999999999999999997
Q ss_pred CCcceEEEEEeeeEEEEEEeccCCC-CCCCCeEEEEecCCCCcccceEEEec
Q 000402 1167 DTRTLQAVFELEALVLTGHCSEKDH-EPPQGLQLILGTKSTPHLVDTLVMAN 1217 (1565)
Q Consensus 1167 ~~~~v~a~yeLe~iliEGha~d~~~-~pprGlqL~L~~~~~~~~~DTiVMan 1217 (1565)
++..|+|+||||||||||||+|.++ .|||||||+|++..+++.+|||||||
T Consensus 160 ~~~~v~a~y~Le~iLieG~~~d~~~~~pp~Glql~L~~~~~~~~~DTiVMaN 211 (211)
T PF06427_consen 160 SGTTVEAVYELESILIEGHARDITTGSPPRGLQLQLGTENGPHSVDTIVMAN 211 (211)
T ss_pred CCceEEEEEEEeeEEEEeEEeecCCCCCCCCcEEEEecCCCCcccCceEeCC
Confidence 5446999999999999999999987 99999999999999999999999998
No 3
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=100.00 E-value=1.2e-42 Score=395.76 Aligned_cols=219 Identities=72% Similarity=1.281 Sum_probs=207.3
Q ss_pred eeEEEeecCcchHHHHHHHHHHHHHhCCCCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccccccccHH
Q 000402 1339 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRII 1418 (1565)
Q Consensus 1339 InIf~va~d~~y~~~~~v~i~Svl~nt~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~ 1418 (1565)
||||++++|+.|+.++++||.|++.|++.+++|||+++++|+++++.|+++.++|+.++++++++||.|++.+...++..
T Consensus 1 ini~~~~~~~~y~~~~~v~l~Sll~nn~~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~~~~~~~~~~ 80 (248)
T cd06432 1 INIFSVASGHLYERFLRIMMLSVMKNTKSPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLHKQTEKQRII 80 (248)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhhcccccchhH
Confidence 79999999999999999999999999988899999999999999999999999999999999999999998876666667
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCcEEEeeccCCCCCCCCcccccchhhhcccCCCCceec
Q 000402 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHIS 1498 (1565)
Q Consensus 1419 ~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~~~a~v~~~~~~~~m~g~~~w~~gyw~~~L~~~~YfnS 1498 (1565)
|+|+||+++.+||++++||||||+|+||++||+|||++||+|+++||+++|....++.+.++|++|||++.++++.||||
T Consensus 81 ~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~~~~~~~~~~~~l~~~~YfNS 160 (248)
T cd06432 81 WGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGFRFWKQGYWKSHLRGRPYHIS 160 (248)
T ss_pred HHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccchhhhhhhhhhhcCCCCccce
Confidence 89999999999999999999999999999999999999999999999999987666778899999999988887789999
Q ss_pred chhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCCCchhhhccCCCceeEccCCCCC
Q 000402 1499 ALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEPIPFFCARLTSPL 1559 (1565)
Q Consensus 1499 Gv~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~~~I~~Lp~~~~~ 1559 (1565)
|||||||++||+.+++++++.+|+.+..++.++.++|| |+||.++++.+|+.||..|++
T Consensus 161 GVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQ--DiLN~v~~~~~i~~Lp~~w~~ 219 (248)
T cd06432 161 ALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQ--DLPNNMQHQVPIFSLPQEWLW 219 (248)
T ss_pred eeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCCc--hhhHHHhccCCeEECChHHHH
Confidence 99999999999999999999999999888899999999 999999998889999999975
No 4
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=99.98 E-value=2.6e-32 Score=311.91 Aligned_cols=214 Identities=26% Similarity=0.355 Sum_probs=178.6
Q ss_pred eeEEEeecCcchHHHHHHHHHHHHHhCCCCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccccc-cccH
Q 000402 1339 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKE-KQRI 1417 (1565)
Q Consensus 1339 InIf~va~d~~y~~~~~v~i~Svl~nt~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~-~~r~ 1417 (1565)
|||+++|+|++|.++++++|.||++|++.+++|||+++++|++.++.|..+.+.+++.++|++++|+.+...+.. +.+.
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRPIK 80 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcchhhhhcCccc
Confidence 799999999999999999999999999889999999999999999999999888899999999998776554433 2333
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCcEEEeeccCCCCCCCCcccccchhhhcccCCCCcee
Q 000402 1418 IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHI 1497 (1565)
Q Consensus 1418 ~~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~~~a~v~~~~~~~~m~g~~~w~~gyw~~~L~~~~Yfn 1497 (1565)
.++|+||++|.+|| +++||||||+|+||++||.|||++|++++++|||++|.......++++ |.....+.+|||
T Consensus 81 ~~~y~RL~i~~llp-~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~-----~~~~~~~~~yfN 154 (246)
T cd00505 81 IVTLTKLHLPNLVP-DYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQ-----KRSHLAGPDYFN 154 (246)
T ss_pred cceeHHHHHHHHhh-ccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhc-----ccCCCCCCCcee
Confidence 48999999999999 899999999999999999999999999999999999865332222222 222224568999
Q ss_pred cchhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCCCchhhhccCCC--ceeEccCCCCCCCCC
Q 000402 1498 SALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEPI--PFFCARLTSPLKPKH 1563 (1565)
Q Consensus 1498 SGv~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~~--~I~~Lp~~~~~~~~~ 1563 (1565)
|||||+|+++||+..+.+++...+.. ...++.++|| |+||.++.+. +|..||..|+..+..
T Consensus 155 sGVmlinl~~~r~~~~~~~~~~~~~~---~~~~~~~~DQ--d~LN~~~~~~~~~i~~L~~~wN~~~~~ 217 (246)
T cd00505 155 SGVFVVNLSKERRNQLLKVALEKWLQ---SLSSLSGGDQ--DLLNTFFKQVPFIVKSLPCIWNVRLTG 217 (246)
T ss_pred eeeEEEechHHHHHHHHHHHHHHHHh---hcccCccCCc--HHHHHHHhcCCCeEEECCCeeeEEecC
Confidence 99999999999977666665554332 3456899999 9999999875 599999999987754
No 5
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=99.97 E-value=3.1e-30 Score=305.80 Aligned_cols=208 Identities=16% Similarity=0.196 Sum_probs=171.0
Q ss_pred CeeeEEEeecCcchHHHHHHHHHHHHHhCC-CCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccccccc
Q 000402 1337 KTINIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQ 1415 (1565)
Q Consensus 1337 ~~InIf~va~d~~y~~~~~v~i~Svl~nt~-~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~ 1415 (1565)
++|||++ ++|.+|..+++++|.||+.|++ .+++||||++++|.++++.|..+++.++.++.++.++ ++++.......
T Consensus 24 ~~i~Iv~-~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id-~~~~~~~~~~~ 101 (334)
T PRK15171 24 NSLDIAY-GIDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLIN-CERLKSLPSTK 101 (334)
T ss_pred CceeEEE-ECcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeC-HHHHhCCcccC
Confidence 6799987 5899999999999999999875 4699999999999999999999999999999999886 45555433344
Q ss_pred cHH-HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCcEEEee-ccCCCCCCCCcccccchhhhcccC--
Q 000402 1416 RII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTP-FCDNNKDMDGYRFWRQGFWKDHLR-- 1491 (1565)
Q Consensus 1416 r~~-~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~~~a~v~-~~~~~~~m~g~~~w~~gyw~~~L~-- 1491 (1565)
+++ .+|+||++|.+||++++||||||+|+||++||+|||++|+++..+|||. ++.. .+|... +..|.
T Consensus 102 ~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~-------~~~~~~--~~~l~~~ 172 (334)
T PRK15171 102 NWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDA-------EWWSKR--AQSLQTP 172 (334)
T ss_pred cCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccch-------hHHHHH--HHhcCCc
Confidence 554 8999999999999889999999999999999999999999977777774 4321 112111 11221
Q ss_pred --CCCceecchhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCCCchhhhccCCCceeEccCCCCC
Q 000402 1492 --GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEPIPFFCARLTSPL 1559 (1565)
Q Consensus 1492 --~~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~~~I~~Lp~~~~~ 1559 (1565)
+..|||||||||||++||+.++++++++++..- .....+.++|| |+||.++.+ .+..||..||.
T Consensus 173 ~~~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~-~~~~~~~~~DQ--DiLN~~~~~-~~~~L~~~wN~ 238 (334)
T PRK15171 173 GLASGYFNSGFLLINIPAWAQENISAKAIEMLADP-EIVSRITHLDQ--DVLNILLAG-KVKFIDAKYNT 238 (334)
T ss_pred cccccceecceEEEcHHHHHHhhHHHHHHHHHhcc-ccccceeecCh--hHHHHHHcC-CeEECCHhhCC
Confidence 246999999999999999999999999887630 11246899999 999999986 79999999985
No 6
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.97 E-value=6.3e-30 Score=294.10 Aligned_cols=214 Identities=18% Similarity=0.259 Sum_probs=165.1
Q ss_pred eeEEEeecCcchHHHHHHHHHHHHHhCCCCeEEEEEECC-CChhHHHHHHHHHHHcCC--EEEEEEccCCcccccccccc
Q 000402 1339 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNY-LSPQFKDVIPHMAQEYGF--EYELITYKWPTWLHKQKEKQ 1415 (1565)
Q Consensus 1339 InIf~va~d~~y~~~~~v~i~Svl~nt~~~v~F~il~~~-lS~~~k~~l~~l~~~~~~--~i~~v~~~wp~~l~~~~~~~ 1415 (1565)
|||..|+||+. .+.+.+||+|++.|+..+++|||+.++ +++++++.+.++...++. .+.++.+.+|.--.. .-+.
T Consensus 1 ~~~~vv~~g~~-~~~~~~~lkSil~~n~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~-~ws~ 78 (304)
T cd06430 1 MHLAVVACGER-LEETLTMLKSAIVFSQKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAA-EWKK 78 (304)
T ss_pred CEEEEEEcCCc-HHHHHHHHHHHHHhCCCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccchh-hhhh
Confidence 57888889988 688899999999999889999999987 999999999999766543 336666665631000 0011
Q ss_pred cH-HHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhc--CCCCC-cEEEeeccCCCCCCCCcccccchhhhcccC
Q 000402 1416 RI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDM--DIKGR-PLAYTPFCDNNKDMDGYRFWRQGFWKDHLR 1491 (1565)
Q Consensus 1416 r~-~~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~--dl~g~-~~a~v~~~~~~~~m~g~~~w~~gyw~~~L~ 1491 (1565)
.+ ..+|+|||+|.+|| ++|||||||+|+||.+||+|||++ |+++. .+|++|+-... . ..|..-+.+....
T Consensus 79 l~~~~~y~RL~ip~lLp-~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~~----~-~~~~~~~~~~~~~ 152 (304)
T cd06430 79 LFKPCAAQRLFLPSLLP-DVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEP----N-IGWYNRFARHPYY 152 (304)
T ss_pred cccHHHHHHHHHHHHhh-hhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEeccccc----c-hhhhhhhcccCcc
Confidence 11 37899999999999 899999999999999999999999 99886 55556653211 0 0121111111112
Q ss_pred CCCceecchhheeHHHHHH-----------hchHHHHHHHHHHhcCCCCCCcCCCCCCchhhhccCCCc--eeEccCCCC
Q 000402 1492 GRPYHISALYVVDLKRFRE-----------TAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEPIP--FFCARLTSP 1558 (1565)
Q Consensus 1492 ~~~YfnSGv~vinL~~~R~-----------~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~~~--I~~Lp~~~~ 1558 (1565)
+..|||||||++||++||+ .++.+++...+++ +...+.++|| |++|.++++.| ++.||+.||
T Consensus 153 ~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~DQ--DiLN~v~~~~p~~~~~Lp~~wN 227 (304)
T cd06430 153 GKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKK---YKLKITWGDQ--DLINIIFHHNPEMLYVFPCHWN 227 (304)
T ss_pred cccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHh---cccCCCCCCH--HHHHHHHcCCCCeEEEcCcccc
Confidence 4468999999999999999 7789999998874 5567999999 99999999875 899999999
Q ss_pred CCCCCCC
Q 000402 1559 LKPKHVL 1565 (1565)
Q Consensus 1559 ~~~~~~~ 1565 (1565)
++|+||.
T Consensus 228 ~~~d~~~ 234 (304)
T cd06430 228 YRPDHCM 234 (304)
T ss_pred CCcccee
Confidence 9999994
No 7
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=99.96 E-value=1.1e-28 Score=282.26 Aligned_cols=208 Identities=21% Similarity=0.299 Sum_probs=177.8
Q ss_pred eeEEEeecCcchHHHHHHHHHHHHHhCC-CCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccccccccH
Q 000402 1339 INIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRI 1417 (1565)
Q Consensus 1339 InIf~va~d~~y~~~~~v~i~Svl~nt~-~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~ 1417 (1565)
|||++ |+|.+|.+++++++.|+++|++ .+++||++++++|++.++.|..+...++..+++++++++.+...+....++
T Consensus 1 ~~I~~-~~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 79 (248)
T cd04194 1 MNIVF-AIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKFFPATTDHI 79 (248)
T ss_pred CCEEE-EecHhhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHhcCCcccccc
Confidence 68986 5899999999999999999998 689999999999999999999999888999999999876554433233344
Q ss_pred -HHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCcEEEeeccCCCCCCCCcccccchhhhcc---cCCC
Q 000402 1418 -IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDH---LRGR 1493 (1565)
Q Consensus 1418 -~~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~~~a~v~~~~~~~~m~g~~~w~~gyw~~~---L~~~ 1493 (1565)
..+|.|||++.+|| +++||||||+|+||++||.|||++|++|+++|++++|.... ...++.. ..+.
T Consensus 80 ~~~~y~rl~l~~ll~-~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~---------~~~~~~~~~~~~~~ 149 (248)
T cd04194 80 SYATYYRLLIPDLLP-DYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQ---------EKKRKRRLGGYDDG 149 (248)
T ss_pred cHHHHHHHHHHHHhc-ccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHH---------HHHHHhhcCCCccc
Confidence 48999999999999 89999999999999999999999999999999999985321 1111111 1356
Q ss_pred CceecchhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCCCchhhhccCCCceeEccCCCCCCCCC
Q 000402 1494 PYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEPIPFFCARLTSPLKPKH 1563 (1565)
Q Consensus 1494 ~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~~~I~~Lp~~~~~~~~~ 1563 (1565)
+||||||||+|+++||+.++.+++++++.. ++.++.++|| |++|.+|.+. +..||..||..+..
T Consensus 150 ~yfNsGv~l~nl~~~r~~~~~~~~~~~~~~---~~~~~~~~DQ--d~LN~~~~~~-~~~L~~~~N~~~~~ 213 (248)
T cd04194 150 SYFNSGVLLINLKKWREENITEKLLELIKE---YGGRLIYPDQ--DILNAVLKDK-ILYLPPRYNFQTGF 213 (248)
T ss_pred ceeeecchheeHHHHHHhhhHHHHHHHHHh---CCCceeeCCh--HHHHHHHhCC-eEEcCcccccchhH
Confidence 899999999999999999999999999885 5567999999 9999999874 99999999987653
No 8
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=99.95 E-value=5.8e-28 Score=279.49 Aligned_cols=211 Identities=18% Similarity=0.217 Sum_probs=162.2
Q ss_pred eeEEEeecCcchHHHHHHHHHHHHHhCCCCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccC-CcccccccccccH
Q 000402 1339 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKW-PTWLHKQKEKQRI 1417 (1565)
Q Consensus 1339 InIf~va~d~~y~~~~~v~i~Svl~nt~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~w-p~~l~~~~~~~r~ 1417 (1565)
|++..|+++.+|.+.+.++|+||+.|+..+++||||++++|.+.++.|.+..+.++.++.|++++. -..+... ...++
T Consensus 1 ~~~~iv~~~~~y~~~~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~~~~~~-~~~~~ 79 (280)
T cd06431 1 IHVAIVCAGYNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWI-PNKHY 79 (280)
T ss_pred CEEEEEEccCCcHHHHHHHHHHHHHcCCCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhhhhccC-cccch
Confidence 456666777999999999999999999888999999999999999999888878899999998841 1111111 12344
Q ss_pred H--HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhc--CCCCC-cEEEeeccCCCCCCCCcccccch-hhhcc--
Q 000402 1418 I--WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDM--DIKGR-PLAYTPFCDNNKDMDGYRFWRQG-FWKDH-- 1489 (1565)
Q Consensus 1418 ~--~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~--dl~g~-~~a~v~~~~~~~~m~g~~~w~~g-yw~~~-- 1489 (1565)
+ .+|.|||+|.+||.+++||||||+|+||++||+|||++ |+.|. ++|++++... |..+ .|+..
T Consensus 80 s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~---------~~~~~~~~~~~~ 150 (280)
T cd06431 80 SGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSD---------WYLGNLWKNHRP 150 (280)
T ss_pred hhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchh---------hhhhhhhhccCC
Confidence 4 36799999999998899999999999999999999998 78665 5666654311 1111 11111
Q ss_pred -cCCCCceecchhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCCCchhhhccCCCc--eeEccCCCCCCC
Q 000402 1490 -LRGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEPIP--FFCARLTSPLKP 1561 (1565)
Q Consensus 1490 -L~~~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~~~--I~~Lp~~~~~~~ 1561 (1565)
.....||||||||+||++||+.++.+++.....+.......+.++|| |+||.++.+-| ++.||+.||+.+
T Consensus 151 ~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQ--DiLN~v~~~~~~~~~~L~~~wN~~~ 223 (280)
T cd06431 151 WPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQ--DIFNAVIKQNPFLVYQLPCAWNVQL 223 (280)
T ss_pred CcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcH--HHHHHHHcCCcceeEECCCcccccc
Confidence 11135999999999999999999999988655432222345789999 99999998866 899999999754
No 9
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=1.1e-27 Score=278.70 Aligned_cols=210 Identities=20% Similarity=0.170 Sum_probs=178.1
Q ss_pred eeeEEEeecCcchHHHHHHHHHHHHHhCCC-CeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCccccccc-ccc
Q 000402 1338 TINIFSIASGHLYERFLKIMILSVLKNTCR-PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQK-EKQ 1415 (1565)
Q Consensus 1338 ~InIf~va~d~~y~~~~~v~i~Svl~nt~~-~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~-~~~ 1415 (1565)
+|||+. |+|++|..+++++|.|++.|++. .++||+|.+++++++++.|.++++.|+..+.++.++ -+-+.... ...
T Consensus 2 ~~~Iv~-a~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id-~~~~~~~~~~~~ 79 (325)
T COG1442 2 TIPIAF-AFDKNYLIPAGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVID-IEPFLDYPPFTK 79 (325)
T ss_pred cccEEE-EcccccchhHHHHHHHHHHhCccccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEe-chhhhccccccc
Confidence 589986 69999999999999999999986 899999999999999999999999999888777665 23333333 557
Q ss_pred cHH-HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCcEEEeeccCCCCCCCCcccccchhhhccc--CC
Q 000402 1416 RII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL--RG 1492 (1565)
Q Consensus 1416 r~~-~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~~~a~v~~~~~~~~m~g~~~w~~gyw~~~L--~~ 1492 (1565)
|++ ++|.|+|++.+||+ .+|+||+|+|+||.+|+++||++|++++++|||.|+.+.. |.++.-+... ..
T Consensus 80 ~~s~~v~~R~fiadlf~~-~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~-------~~~~~~~~~~~~~~ 151 (325)
T COG1442 80 RFSKMVLVRYFLADLFPQ-YDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHY-------MKEGALRLEKGDLE 151 (325)
T ss_pred chHHHHHHHHHHHHhccc-cCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhh-------hhhhhhHhhhcccc
Confidence 777 89999999999996 5999999999999999999999999999999999986542 2222111111 24
Q ss_pred CCceecchhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCCCchhhhccCCCceeEccCCCCCCCCC
Q 000402 1493 RPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEPIPFFCARLTSPLKPKH 1563 (1565)
Q Consensus 1493 ~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~~~I~~Lp~~~~~~~~~ 1563 (1565)
..||||||+++|++.||++++.+++...... ..+.+.++|| |++|.++++ ++..||+.+|.-|-+
T Consensus 152 ~~yFNaG~llinl~~W~~~~i~~k~i~~~~~---~~~~~~~~DQ--diLN~i~~~-~~~~L~~~YN~~~~~ 216 (325)
T COG1442 152 GSYFNAGVLLINLKLWREENIFEKLIELLKD---KENDLLYPDQ--DILNMIFED-RVLELPIRYNAIPYI 216 (325)
T ss_pred cccCccceeeehHHHHHHhhhHHHHHHHHhc---cccccCCccc--cHHHHHHHh-hhhccCcccceeehh
Confidence 6899999999999999999999999999753 3368999999 999999987 799999999988754
No 10
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.94 E-value=1.8e-26 Score=263.61 Aligned_cols=188 Identities=16% Similarity=0.152 Sum_probs=153.4
Q ss_pred eeEEEeecCcchHHHHHHHHHHHHHhCC--CCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccc-----
Q 000402 1339 INIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQ----- 1411 (1565)
Q Consensus 1339 InIf~va~d~~y~~~~~v~i~Svl~nt~--~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~----- 1411 (1565)
+||++ ++| +|.. +++++.|++.|++ .+++|||+++++|.+.++.+......++.+|+++.++ +..+...
T Consensus 1 ~hiv~-~~D-n~l~-~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~-~~~~~~~~~~~~ 76 (257)
T cd06429 1 IHVVI-FSD-NRLA-AAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFD-DFKLLGKVKVDS 76 (257)
T ss_pred CCEEE-Eec-chhH-HHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeC-cHHhhcccccch
Confidence 57875 588 8884 7788888888775 5799999999999877777777666678999999986 3322111
Q ss_pred ---------------cccccHH-HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCcEEEeeccCCCCCC
Q 000402 1412 ---------------KEKQRII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDM 1475 (1565)
Q Consensus 1412 ---------------~~~~r~~-~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~~~a~v~~~~~~~~m 1475 (1565)
+...+++ .+|.||++|.+|| +++||||||+|+||++||+|||++||+|+++|||+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp-~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d------- 148 (257)
T cd06429 77 LMQLESEADTSNLKQRKPEYISLLNFARFYLPELFP-KLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET------- 148 (257)
T ss_pred hhhhhccccccccccCCccccCHHHHHHHHHHHHhh-hhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh-------
Confidence 1224443 8999999999999 699999999999999999999999999999999964
Q ss_pred CCcccccchhhhcccCCCCceecchhheeHHHHHHhchHHHHHHHHHHhcCCC-CCCcCCCCCCchhhhccCCCceeEcc
Q 000402 1476 DGYRFWRQGFWKDHLRGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDP-NSLANLDQLGFWPASSQEPIPFFCAR 1554 (1565)
Q Consensus 1476 ~g~~~w~~gyw~~~L~~~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~d~-~sl~~~DQ~~DllN~~~~~~~I~~Lp 1554 (1565)
|||||||||||++||+.++++++..++....... .....+|| |++|.++.+ .+..||
T Consensus 149 -------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dq--d~ln~~~~~-~~~~L~ 206 (257)
T cd06429 149 -------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITL--PPGLIVFYG-LTSPLD 206 (257)
T ss_pred -------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCc--cHHHHHccC-eeEECC
Confidence 8999999999999999999999999887532211 12456789 999999986 799999
Q ss_pred CCCCCC
Q 000402 1555 LTSPLK 1560 (1565)
Q Consensus 1555 ~~~~~~ 1560 (1565)
.+|+..
T Consensus 207 ~~wN~~ 212 (257)
T cd06429 207 PSWHVR 212 (257)
T ss_pred hHHccc
Confidence 999975
No 11
>PLN02718 Probable galacturonosyltransferase
Probab=99.92 E-value=4.3e-25 Score=267.88 Aligned_cols=215 Identities=14% Similarity=0.167 Sum_probs=165.1
Q ss_pred cCCeeeEEEeecCcchHHHHHHHHHHHHHhCC--CCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccc---
Q 000402 1335 HGKTINIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLH--- 1409 (1565)
Q Consensus 1335 ~~~~InIf~va~d~~y~~~~~v~i~Svl~nt~--~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~--- 1409 (1565)
+...+||++ ++|+ | ..++|+|.|++.|++ ..+.|||+++++|...++.+..+...++..|+++.++--.|+.
T Consensus 310 d~~~~Hia~-~sDN-v-laasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~ 386 (603)
T PLN02718 310 DPDLYHYVV-FSDN-V-LACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADY 386 (603)
T ss_pred CCcceeEEE-EcCC-c-eeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccc
Confidence 345599975 3664 6 489999999999954 5699999999999999998888777778999999885112332
Q ss_pred -----ccc-cc-ccHH-HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCcEEEeeccCCCC----CCCC
Q 000402 1410 -----KQK-EK-QRII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNK----DMDG 1477 (1565)
Q Consensus 1410 -----~~~-~~-~r~~-~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~~~a~v~~~~~~~----~m~g 1477 (1565)
.+. .+ .+++ .+|.||+||.+|| +++||||||+|+||++||.|||++||+|+++|+|++|.... .+..
T Consensus 387 ~~~lk~l~s~~~~~~S~~~y~Rl~ipellp-~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~ 465 (603)
T PLN02718 387 NSLLMKQNSHDPRYISALNHARFYLPDIFP-GLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDT 465 (603)
T ss_pred hhhhhhccccccccccHHHHHHHHHHHHhc-ccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhh
Confidence 111 11 2343 7899999999999 69999999999999999999999999999999999996421 1111
Q ss_pred cccccchhh-hcccC-CCCceecchhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCCCchhh---hccCCCceeE
Q 000402 1478 YRFWRQGFW-KDHLR-GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPA---SSQEPIPFFC 1552 (1565)
Q Consensus 1478 ~~~w~~gyw-~~~L~-~~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN---~~~~~~~I~~ 1552 (1565)
+..|. ..| .+.+. ..||||+||+||||++||+.++++++..+++. +... .+.|| |.+| .+|.+ .++.
T Consensus 466 ~lnfs-~p~i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~---n~~~-~l~dq--daLpp~LlvF~g-ri~~ 537 (603)
T PLN02718 466 FINFS-DPWVAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQL---GVKR-PLWKA--GSLPIGWLTFYN-QTVA 537 (603)
T ss_pred hhhcc-chhhhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHh---ccCc-cccCc--ccccHHHHHhcC-ceee
Confidence 10011 112 11232 56999999999999999999999999999874 3333 67899 9998 67765 7999
Q ss_pred ccCCCCCCC
Q 000402 1553 ARLTSPLKP 1561 (1565)
Q Consensus 1553 Lp~~~~~~~ 1561 (1565)
|+.+|+..+
T Consensus 538 LD~rWNv~g 546 (603)
T PLN02718 538 LDKRWHVLG 546 (603)
T ss_pred cChHHhccC
Confidence 999998654
No 12
>PLN02523 galacturonosyltransferase
Probab=99.91 E-value=3.2e-24 Score=257.28 Aligned_cols=214 Identities=15% Similarity=0.220 Sum_probs=155.7
Q ss_pred CCeeeEEEeecCcchHHHHHHHHHHHHHhCCC--CeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCC-cccc---
Q 000402 1336 GKTINIFSIASGHLYERFLKIMILSVLKNTCR--PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWP-TWLH--- 1409 (1565)
Q Consensus 1336 ~~~InIf~va~d~~y~~~~~v~i~Svl~nt~~--~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp-~~l~--- 1409 (1565)
++...-+++.+|+ ...++|+|.|++.|++. ++.|||+++.++...++.+-.+....+..|++..++ + .|+.
T Consensus 245 dp~l~Hy~ifSdN--vlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Ie-df~~ln~~~ 321 (559)
T PLN02523 245 DPSLYHYAIFSDN--VIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVE-DYKFLNSSY 321 (559)
T ss_pred CCCcceEEEecCc--chhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEee-hhhhccccc
Confidence 3444444456775 77899999999999875 499999999999777666655555457888777764 2 3333
Q ss_pred -c---cccc---------------------------ccHH-HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcC
Q 000402 1410 -K---QKEK---------------------------QRII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMD 1457 (1565)
Q Consensus 1410 -~---~~~~---------------------------~r~~-~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~d 1457 (1565)
+ |.+. ..++ .+|.||+||.+|| +++||||||+|+||++||++||++|
T Consensus 322 ~pvlk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP-~ldKVLYLD~DVVVq~DLseLw~iD 400 (559)
T PLN02523 322 VPVLRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYP-KLHRILFLDDDVVVQKDLTGLWKID 400 (559)
T ss_pred chHHHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhc-ccCeEEEEeCCEEecCCHHHHHhCc
Confidence 1 0000 2233 7899999999999 6999999999999999999999999
Q ss_pred CCCCcEEEeeccCCC-CCCCCcccccchhhhcccC-CCCceecchhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCC
Q 000402 1458 IKGRPLAYTPFCDNN-KDMDGYRFWRQGFWKDHLR-GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLD 1535 (1565)
Q Consensus 1458 l~g~~~a~v~~~~~~-~~m~g~~~w~~gyw~~~L~-~~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~D 1535 (1565)
|+|+++|+|.+|... .+...+..+....-++++. ..||||+||+||||++||++++++++. +|+.+.. .....|
T Consensus 401 L~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~-~w~~ln~---~~~l~D 476 (559)
T PLN02523 401 MDGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYH-YWQNLNE---NRTLWK 476 (559)
T ss_pred CCCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHH-HHHHhcc---cccccc
Confidence 999999999999421 1100000000011122333 468888899999999999999999984 5665433 367899
Q ss_pred CCCchhh---hccCCCceeEccCCCCCC
Q 000402 1536 QLGFWPA---SSQEPIPFFCARLTSPLK 1560 (1565)
Q Consensus 1536 Q~~DllN---~~~~~~~I~~Lp~~~~~~ 1560 (1565)
| |.+| .+|.+ .++.|+.+|+..
T Consensus 477 q--daLpp~LivF~g-ri~~LD~rWNvl 501 (559)
T PLN02523 477 L--GTLPPGLITFYS-TTKPLDKSWHVL 501 (559)
T ss_pred c--cccchHHHHhcC-ceEecCchhhcc
Confidence 9 9996 66664 799999999843
No 13
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=99.86 E-value=5.6e-22 Score=225.23 Aligned_cols=208 Identities=20% Similarity=0.228 Sum_probs=151.5
Q ss_pred eEEEeecCcchHHHHHHHHHHHHHhCC--CCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCccc----ccccc
Q 000402 1340 NIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWL----HKQKE 1413 (1565)
Q Consensus 1340 nIf~va~d~~y~~~~~v~i~Svl~nt~--~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l----~~~~~ 1413 (1565)
||+. ++|.+|..++.+++.|+++|++ ..++||+++++++++.++.|......+.....+.... ...+ .....
T Consensus 1 ~i~~-~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (250)
T PF01501_consen 1 HIVL-ACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPD-ISMLEEFQFNSPS 78 (250)
T ss_dssp -EEE-ECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETS-GGHHH--TTS-HC
T ss_pred CEEE-EeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccch-HHhhhhhhhcccc
Confidence 6775 5899999999999999999998 5799999999999999999887765543322222221 1211 11222
Q ss_pred cccHH-HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCcEEEeeccCCCCCCCCcccccchhhhcc---
Q 000402 1414 KQRII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDH--- 1489 (1565)
Q Consensus 1414 ~~r~~-~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~~~a~v~~~~~~~~m~g~~~w~~gyw~~~--- 1489 (1565)
..++. .+|.||+++.+|| +++||||||+|+||.+||.+||+++++|+++|+++++... .++...++...
T Consensus 79 ~~~~~~~~~~rl~i~~ll~-~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~------~~~~~~~~~~~~~~ 151 (250)
T PF01501_consen 79 KRHFSPATFARLFIPDLLP-DYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFD------NFPNKRFPFSERKQ 151 (250)
T ss_dssp CTCGGGGGGGGGGHHHHST-TSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----H------HHHTSTTSSEEECE
T ss_pred cccccHHHHHHhhhHHHHh-hcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhh------hhhhcccchhhccc
Confidence 34443 7899999999996 7999999999999999999999999999999999883211 11111111111
Q ss_pred cCCCCceecchhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCCCchhhhccCCCceeEccCCCCCCCC
Q 000402 1490 LRGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEPIPFFCARLTSPLKPK 1562 (1565)
Q Consensus 1490 L~~~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~~~I~~Lp~~~~~~~~ 1562 (1565)
....+||||||||+|+++||+.++.++++.+++. +...+.+.|| |++|.++.. .+..||..|+..+.
T Consensus 152 ~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~DQ--~~ln~~~~~-~~~~L~~~~N~~~~ 218 (250)
T PF01501_consen 152 PGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQ---NGMKLGFPDQ--DILNIVFYG-NIKPLPCRYNCQPS 218 (250)
T ss_dssp STTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHH---TTTT-SSCHH--HHHHHHHTT-GEEEEEGGGSEEHH
T ss_pred CcccccccCcEEEEeechhhhhhhhhhhhhhhhh---cccccCcCch--HHHhhhccc-eeEEECchhccccc
Confidence 1356999999999999999999999999999774 4447899999 999999984 89999999987653
No 14
>PLN02870 Probable galacturonosyltransferase
Probab=99.86 E-value=1e-21 Score=235.45 Aligned_cols=213 Identities=15% Similarity=0.242 Sum_probs=147.7
Q ss_pred CCeeeEEEeecCcchHHHHHHHHHHHHHhCC--CCeEEEEEECCCChhH-HHHHHHHHHHc-CCEEEEEEccCCccccc-
Q 000402 1336 GKTINIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQF-KDVIPHMAQEY-GFEYELITYKWPTWLHK- 1410 (1565)
Q Consensus 1336 ~~~InIf~va~d~~y~~~~~v~i~Svl~nt~--~~v~F~il~~~lS~~~-k~~l~~l~~~~-~~~i~~v~~~wp~~l~~- 1410 (1565)
++..+-+++.||+-. -+.|++.|.+.|++ .++-|||+++.++=.- +.++. .+.+ +..|+...+.=-.||..
T Consensus 203 dp~~~Hy~ifSdNvL--AasVvvnStv~~a~~p~~~VFHvvTD~~n~~aM~~WF~--~n~~~~a~v~V~~~e~f~wl~~~ 278 (533)
T PLN02870 203 DNSYHHFVLSTDNIL--AASVVVSSTVQSSLKPEKIVFHVITDKKTYAGMHSWFA--LNSVSPAIVEVKGVHQFDWLTRE 278 (533)
T ss_pred CCcceeEEEEeccee--EEEeeeehhhhcccCccceEEEEecCccccHHHHHHHh--hCCCccceEEEEehhhccccccc
Confidence 455666667777644 45678889998886 4588999998765322 22221 1223 45665555421112110
Q ss_pred ------ccc----------------------------------c-ccHH-HHHHHHhhcccCCCCCCeEEEEeCceeecc
Q 000402 1411 ------QKE----------------------------------K-QRII-WAYKILFLDVIFPLSLEKVIFVDADQVVRA 1448 (1565)
Q Consensus 1411 ------~~~----------------------------------~-~r~~-~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~ 1448 (1565)
|.+ + ..++ .+|.||+||.+|| +++||||||+|+||++
T Consensus 279 ~~pvl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~lny~Rl~LPelLP-~LdKVLYLD~DVVVqg 357 (533)
T PLN02870 279 NVPVLEAVESHNGIRNYYHGNHIAGANLSETTPRTFASKLQARSPKYISLLNHLRIYLPELFP-NLDKVVFLDDDVVIQR 357 (533)
T ss_pred cchHHHHHhhhHHHHHHhhcccccccccccccchhhhcccccCCccccCHHHHHHHHHHHHhh-hcCeEEEEeCCEEecC
Confidence 000 1 1122 7899999999999 7999999999999999
Q ss_pred CchHHHhcCCCCCcEEEeeccCCCC------CCCCcccccchhhhccc-CCCCceecchhheeHHHHHHhchHHHHHHHH
Q 000402 1449 DMGELYDMDIKGRPLAYTPFCDNNK------DMDGYRFWRQGFWKDHL-RGRPYHISALYVVDLKRFRETAAGDNLRVFY 1521 (1565)
Q Consensus 1449 Dl~EL~~~dl~g~~~a~v~~~~~~~------~m~g~~~w~~gyw~~~L-~~~~YfnSGv~vinL~~~R~~~~~dklr~~y 1521 (1565)
||++||++||+|+++|||.+|.... +..++-.+.....+..+ .+.|||||||+||||++||+.++++++..++
T Consensus 358 DLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i~~~fd~~~cyfNSGVlLINL~~WRe~nITek~~~~l 437 (533)
T PLN02870 358 DLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKNLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWL 437 (533)
T ss_pred cHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccccchhhcccCcccceeeccchhccHHHHHHcChHHHHHHHH
Confidence 9999999999999999999995321 11111001112222233 2569999999999999999999999999998
Q ss_pred HHhcCCC-CCCcCCCCCCchh---hhccCCCceeEccCCCCC
Q 000402 1522 ETLSKDP-NSLANLDQLGFWP---ASSQEPIPFFCARLTSPL 1559 (1565)
Q Consensus 1522 ~~ls~d~-~sl~~~DQ~~Dll---N~~~~~~~I~~Lp~~~~~ 1559 (1565)
+. +. ..+.+.|| |.+ |.++.+ .++.|+.+|+.
T Consensus 438 ~~---n~~~~l~l~DQ--daLp~~livf~g-~v~~LD~rWN~ 473 (533)
T PLN02870 438 KE---NLKSNLTMWKL--GTLPPALIAFKG-HVHPIDPSWHM 473 (533)
T ss_pred Hh---hhhcCceeccc--ccccHhHHHhcC-ceEECChHHhc
Confidence 74 32 34789999 999 467765 79999999985
No 15
>PLN02742 Probable galacturonosyltransferase
Probab=99.86 E-value=2.5e-21 Score=232.74 Aligned_cols=215 Identities=15% Similarity=0.210 Sum_probs=155.1
Q ss_pred CCeeeEEEeecCcchHHHHHHHHHHHHHhCCCC--eEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccc--
Q 000402 1336 GKTINIFSIASGHLYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQ-- 1411 (1565)
Q Consensus 1336 ~~~InIf~va~d~~y~~~~~v~i~Svl~nt~~~--v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~-- 1411 (1565)
++..+-+++.||+-- -+.|+|.|.+.|+++| +.|||+++..+-......-....--+..+++++++-=.|+..-
T Consensus 224 d~~l~Hy~ifSdNvl--AasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~ 301 (534)
T PLN02742 224 DNNLYHFCVFSDNIL--ATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYV 301 (534)
T ss_pred CCCcceEEEEeccch--hhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccc
Confidence 455666777787643 5778999999999866 9999999876654433322222223778888887511344320
Q ss_pred -----------------------------cccccH-HHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCC
Q 000402 1412 -----------------------------KEKQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGR 1461 (1565)
Q Consensus 1412 -----------------------------~~~~r~-~~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~ 1461 (1565)
+....+ ..+|.||+||.+|| +++||||||+|+||++||.|||++||+|+
T Consensus 302 pvl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp-~l~KvlYLD~DvVV~~DL~eL~~~DL~~~ 380 (534)
T PLN02742 302 PVLKQLQDSDTQSYYFSGSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYP-ALEKVVFLDDDVVVQKDLTPLFSIDLHGN 380 (534)
T ss_pred hHHHHhhhhhhhhhhcccccccccccccccCcccccHHHHHHHHHHHHhh-ccCeEEEEeCCEEecCChHHHhcCCCCCC
Confidence 001122 37899999999999 69999999999999999999999999999
Q ss_pred cEEEeeccCCC-CCCCCcccccchhhhcccC-CCCceecchhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCCCc
Q 000402 1462 PLAYTPFCDNN-KDMDGYRFWRQGFWKDHLR-GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGF 1539 (1565)
Q Consensus 1462 ~~a~v~~~~~~-~~m~g~~~w~~gyw~~~L~-~~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~D 1539 (1565)
++|+|++|... .++.++-+|.....+..+. +.||||+||+||||++||++++++.+. .++.. .......|| |
T Consensus 381 viaAVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~-~w~e~---n~~~~l~d~--g 454 (534)
T PLN02742 381 VNGAVETCLETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYH-YWQEQ---NVDRTLWKL--G 454 (534)
T ss_pred EEEEeCchhhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHH-HHHHh---ccccccccc--c
Confidence 99999999532 1222332333332333333 569999999999999999999999665 44442 234678899 9
Q ss_pred hhhhc---cCCCceeEccCCCCCC
Q 000402 1540 WPASS---QEPIPFFCARLTSPLK 1560 (1565)
Q Consensus 1540 llN~~---~~~~~I~~Lp~~~~~~ 1560 (1565)
.+|.+ |.+ .+..|+.+|+..
T Consensus 455 aLpp~LLaF~g-~~~~LD~rWNv~ 477 (534)
T PLN02742 455 TLPPGLLTFYG-LTEPLDRRWHVL 477 (534)
T ss_pred ccchHHHHHcC-cceecChhheec
Confidence 99964 554 699999999874
No 16
>PLN02659 Probable galacturonosyltransferase
Probab=99.85 E-value=1.2e-21 Score=234.76 Aligned_cols=214 Identities=16% Similarity=0.226 Sum_probs=146.6
Q ss_pred CCeeeEEEeecCcchHHHHHHHHHHHHHhCC--CCeEEEEEECCCChhH-HHHHHHHHHHc-CCEEEEEEccCCccccc-
Q 000402 1336 GKTINIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQF-KDVIPHMAQEY-GFEYELITYKWPTWLHK- 1410 (1565)
Q Consensus 1336 ~~~InIf~va~d~~y~~~~~v~i~Svl~nt~--~~v~F~il~~~lS~~~-k~~l~~l~~~~-~~~i~~v~~~wp~~l~~- 1410 (1565)
++..+-+++.||+-. -+.|++.|.+.|++ .++-|||+++.++=.- +.++. .+.+ +..|+..++.=-.||..
T Consensus 204 d~~l~Hy~ifSdNvL--AasVVvnStv~~a~~p~~~VFHivTD~~ny~aM~~WF~--~n~~~~a~v~V~~~e~f~wl~~~ 279 (534)
T PLN02659 204 DNSYFHFVLASDNIL--AASVVANSLVQNALRPHKFVLHIITDRKTYSPMQAWFS--LHPLSPAIIEVKALHHFDWFAKG 279 (534)
T ss_pred CCCcceEEEEeccee--EEEeeeehhhhcccCccceEEEEecCccccHHHHHHHh--hCCCccceEEEEeehhccccccc
Confidence 455666666677543 45678888888886 4588999998765332 22221 1223 45555544421112210
Q ss_pred ------cc----------------------------------cccc-H-HHHHHHHhhcccCCCCCCeEEEEeCceeecc
Q 000402 1411 ------QK----------------------------------EKQR-I-IWAYKILFLDVIFPLSLEKVIFVDADQVVRA 1448 (1565)
Q Consensus 1411 ------~~----------------------------------~~~r-~-~~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~ 1448 (1565)
|. .+.+ + +.+|+||+||.+|| +++||||||+|+||++
T Consensus 280 ~~pvl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~~nY~RL~IPeLLP-~LdKVLYLD~DVVVqg 358 (534)
T PLN02659 280 KVPVLEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAAKLQALSPKYNSVMNHIRIHLPELFP-SLNKVVFLDDDIVVQT 358 (534)
T ss_pred ccHHHHHHhhhhhhhhhhcccccccccccccCccccccccccCCccceeHHHHHHHHHHHHhh-hcCeEEEeeCCEEEcC
Confidence 00 0111 2 27899999999999 7999999999999999
Q ss_pred CchHHHhcCCCCCcEEEeeccCCC------CCCCCcccccchhhhcccC-CCCceecchhheeHHHHHHhchHHHHHHHH
Q 000402 1449 DMGELYDMDIKGRPLAYTPFCDNN------KDMDGYRFWRQGFWKDHLR-GRPYHISALYVVDLKRFRETAAGDNLRVFY 1521 (1565)
Q Consensus 1449 Dl~EL~~~dl~g~~~a~v~~~~~~------~~m~g~~~w~~gyw~~~L~-~~~YfnSGv~vinL~~~R~~~~~dklr~~y 1521 (1565)
||+|||++||+|+++|||++|... .++..+--+.....++++. +.||||+||+||||++||++++++++..++
T Consensus 359 DLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i~~yFn~~~cYfNsGVlLINLk~WRe~nITek~l~~l 438 (534)
T PLN02659 359 DLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAYGMNIFDLEAWRKTNISSTYHHWL 438 (534)
T ss_pred chHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhhhhccCccccceecceeEeeHHHHHhcChHHHHHHHH
Confidence 999999999999999999999532 1110000000111222333 468999999999999999999999999998
Q ss_pred HHhcCCC-CCCcCCCCCCchhh---hccCCCceeEccCCCCCC
Q 000402 1522 ETLSKDP-NSLANLDQLGFWPA---SSQEPIPFFCARLTSPLK 1560 (1565)
Q Consensus 1522 ~~ls~d~-~sl~~~DQ~~DllN---~~~~~~~I~~Lp~~~~~~ 1560 (1565)
+. +. ..+.+.|| |+|| .++.+ .++.|+.+|+.-
T Consensus 439 ~~---n~~~~l~l~DQ--daLp~~LivF~g-~v~~LD~rWN~~ 475 (534)
T PLN02659 439 EE---NLKSDLSLWQL--GTLPPGLIAFHG-HVHVIDPFWHML 475 (534)
T ss_pred Hh---ccccccccccc--ccchHHHHHhcC-CEEECChhheec
Confidence 74 33 34888999 9995 66765 799999999853
No 17
>PLN02769 Probable galacturonosyltransferase
Probab=99.85 E-value=1.8e-21 Score=237.63 Aligned_cols=210 Identities=18% Similarity=0.246 Sum_probs=149.4
Q ss_pred CCeeeEEEeecCcchHHHHHHHHHHHHHhCC--CCeEEEEEECCCChhH-HHHHHHHHHHc-CCEEEEEEc---cCCc--
Q 000402 1336 GKTINIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQF-KDVIPHMAQEY-GFEYELITY---KWPT-- 1406 (1565)
Q Consensus 1336 ~~~InIf~va~d~~y~~~~~v~i~Svl~nt~--~~v~F~il~~~lS~~~-k~~l~~l~~~~-~~~i~~v~~---~wp~-- 1406 (1565)
++..+-+++.||+-- -+.|+|.|.+.|++ .++.|||+++..+-.- +.++.. +.+ +..|+..++ +|..
T Consensus 327 d~~l~Hy~ifSdNvl--AasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~--n~~~~a~v~v~n~e~~~~~~~~ 402 (629)
T PLN02769 327 DPSLRHYVIFSKNVL--AASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDR--NSYKEAAVQVLNIEDLILKDLD 402 (629)
T ss_pred CCccceEEEEeccce--eeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhc--CCCccceEEEeeeeeeeecccc
Confidence 455666667777644 56789999999998 6799999998755332 222211 223 445554443 3431
Q ss_pred --cccc--------------------ccccccHH-HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCcE
Q 000402 1407 --WLHK--------------------QKEKQRII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPL 1463 (1565)
Q Consensus 1407 --~l~~--------------------~~~~~r~~-~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~~~ 1463 (1565)
.+++ ++..+.++ .+|.|||||.+|| +++||||||+|+||++||++||++||+|+++
T Consensus 403 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~eyiS~~nh~RfyIPELLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkvi 481 (629)
T PLN02769 403 KFALKQLSLPEEFRVSFRSVDNPSSKQMRTEYLSVFSHSHFLLPEIFK-KLKKVVVLDDDVVVQRDLSFLWNLDMGGKVN 481 (629)
T ss_pred hHHHHhhccchhhhhhhccCCCCchhccCcccccHHHHHHHHHHHHhh-hcCeEEEEeCCEEecCcHHHHhcCCCCCCeE
Confidence 0000 00112233 7899999999999 6999999999999999999999999999999
Q ss_pred EEeeccCCCCCCCCcccccchhh-hccc-CCCCceecchhheeHHHHHHhchHHHHHHHHHHhcC-CCCCCcCCCCCCch
Q 000402 1464 AYTPFCDNNKDMDGYRFWRQGFW-KDHL-RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSK-DPNSLANLDQLGFW 1540 (1565)
Q Consensus 1464 a~v~~~~~~~~m~g~~~w~~gyw-~~~L-~~~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~-d~~sl~~~DQ~~Dl 1540 (1565)
|||++|..+.. .+.. |. ...+ ...||||+|||||||++||+.++++++..+++.+.. +...+...+| ++
T Consensus 482 AAVedc~~rl~--~~~~----yl~~~~F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~L--p~ 553 (629)
T PLN02769 482 GAVQFCGVRLG--QLKN----YLGDTNFDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFSKDGEESLRAAAL--PA 553 (629)
T ss_pred EEehhhhhhhh--hhhh----hhcccCCCccccccccCeeEeeHHHHHHhCHHHHHHHHHHHhhhcccccccccCc--CH
Confidence 99999953211 1110 11 1122 356899999999999999999999999998877544 3344556677 88
Q ss_pred hhhccCCCceeEccCCCCC
Q 000402 1541 PASSQEPIPFFCARLTSPL 1559 (1565)
Q Consensus 1541 lN~~~~~~~I~~Lp~~~~~ 1559 (1565)
+|.+|.+ .++.|+.+|++
T Consensus 554 lnlvF~g-~v~~LD~rWNv 571 (629)
T PLN02769 554 SLLTFQD-LIYPLDDRWVL 571 (629)
T ss_pred HHHHhcC-eEEECCHHHcc
Confidence 8888876 79999999995
No 18
>PLN02829 Probable galacturonosyltransferase
Probab=99.85 E-value=2.8e-21 Score=233.95 Aligned_cols=213 Identities=15% Similarity=0.191 Sum_probs=149.6
Q ss_pred CCeeeEEEeecCcchHHHHHHHHHHHHHhCC--CCeEEEEEECCCChhH-HHHHHHHHHHc-CCEEEEEEccCCccccc-
Q 000402 1336 GKTINIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQF-KDVIPHMAQEY-GFEYELITYKWPTWLHK- 1410 (1565)
Q Consensus 1336 ~~~InIf~va~d~~y~~~~~v~i~Svl~nt~--~~v~F~il~~~lS~~~-k~~l~~l~~~~-~~~i~~v~~~wp~~l~~- 1410 (1565)
++..+-+++.||+-. -+.|++.|.+.|++ .++-|||+++.++=.- +.++. .+.+ +..|+...+.=-.|+..
T Consensus 328 dp~l~Hy~ifSdNVL--AasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~--~n~~~~A~v~V~nie~f~wln~~ 403 (639)
T PLN02829 328 DPQLYHYALFSDNVL--AAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFL--VNPPGKATIQVQNIEEFTWLNSS 403 (639)
T ss_pred CCccceEEEEeccee--EEEeeeehhhhcccCccceEEEEecCccchHHHHHHHh--hCCCccceEEEEehhhccccccc
Confidence 455666667777543 45678899998886 4588999998765332 22221 1233 56666665521112211
Q ss_pred ------ccc------------------------cccHH-HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCC
Q 000402 1411 ------QKE------------------------KQRII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIK 1459 (1565)
Q Consensus 1411 ------~~~------------------------~~r~~-~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~ 1459 (1565)
|.+ -.+++ .+|.|||||.+|| +++||||||+|+||++||++||++||+
T Consensus 404 ~~pvl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~ 482 (639)
T PLN02829 404 YSPVLKQLGSQSMIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFP-KLNKVLFLDDDIVVQKDLTGLWSIDLK 482 (639)
T ss_pred ccHHHHHhhhhhhhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhc-ccCeEEEEeCCEEeCCChHHHHhCCCC
Confidence 000 11233 7899999999999 799999999999999999999999999
Q ss_pred CCcEEEeeccCCC-CCCCCcccccchhhhcccC-CCCceecchhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCC
Q 000402 1460 GRPLAYTPFCDNN-KDMDGYRFWRQGFWKDHLR-GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQL 1537 (1565)
Q Consensus 1460 g~~~a~v~~~~~~-~~m~g~~~w~~gyw~~~L~-~~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~ 1537 (1565)
|+++|||++|... .++..+-+|.....+..+. ..||||+|||||||++||+.++++++..+++. +.+. ...||
T Consensus 483 gkviAAVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~---n~~r-~L~dl- 557 (639)
T PLN02829 483 GNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKL---NHDR-QLWKL- 557 (639)
T ss_pred CceEEEeccchhhhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHH---ccCC-ccccc-
Confidence 9999999999642 1222222232222223343 56999999999999999999999999988753 3333 34899
Q ss_pred Cchhhhcc---CCCceeEccCCCCCC
Q 000402 1538 GFWPASSQ---EPIPFFCARLTSPLK 1560 (1565)
Q Consensus 1538 ~DllN~~~---~~~~I~~Lp~~~~~~ 1560 (1565)
|.+|.++ .+ .++.|+.+|+..
T Consensus 558 -gaLPp~Ll~F~g-~i~~LD~rWNv~ 581 (639)
T PLN02829 558 -GTLPPGLITFWK-RTYPLDRSWHVL 581 (639)
T ss_pred -cCCChHHHHhcC-ceEecChhheec
Confidence 9999864 44 699999999865
No 19
>PLN02867 Probable galacturonosyltransferase
Probab=99.83 E-value=1.1e-20 Score=227.70 Aligned_cols=212 Identities=15% Similarity=0.248 Sum_probs=144.7
Q ss_pred CCeeeEEEeecCcchHHHHHHHHHHHHHhCC--CCeEEEEEECCCChhH-HHHHHHHHHHc-CCEEEEEEc---cCCc--
Q 000402 1336 GKTINIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQF-KDVIPHMAQEY-GFEYELITY---KWPT-- 1406 (1565)
Q Consensus 1336 ~~~InIf~va~d~~y~~~~~v~i~Svl~nt~--~~v~F~il~~~lS~~~-k~~l~~l~~~~-~~~i~~v~~---~wp~-- 1406 (1565)
++..+-+++.||+-. -+.|++.|.+.|++ .++-|||+++.++=.- +.++. .+.+ +..|+...+ +|-.
T Consensus 208 d~~~~Hy~ifSdNvL--AasVvvnStv~~a~~p~~~VfHvvTD~~ny~aM~~WF~--~n~~~~a~v~V~~~~~f~wl~~~ 283 (535)
T PLN02867 208 DPSFHHVVLLTDNVL--AASVVISSTVQNAANPEKLVFHIVTDKKTYTPMHAWFA--INSIKSAVVEVKGLHQYDWSQEV 283 (535)
T ss_pred CCCcceEEEEeccee--EEEeeeehhhhcccCccceEEEEecCccccHHHHHHHh--hCCCccceEEEEeehhccccccc
Confidence 455666667777644 45678889998886 4588999998765332 22221 1223 455555443 4421
Q ss_pred ccc--ccc-------------------------------cccc-HH-HHHHHHhhcccCCCCCCeEEEEeCceeeccCch
Q 000402 1407 WLH--KQK-------------------------------EKQR-II-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMG 1451 (1565)
Q Consensus 1407 ~l~--~~~-------------------------------~~~r-~~-~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~ 1451 (1565)
... .+. .+.. ++ .+|.||+||.+|| +++||||||+|+||++||+
T Consensus 284 ~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkylS~lnYlRflIPeLLP-~LdKVLYLD~DVVVqgDLs 362 (535)
T PLN02867 284 NVGVKEMLEIHRLIWSHYYQNLKESDFQFEGTHKRSLEALSPSCLSLLNHLRIYIPELFP-DLNKIVFLDDDVVVQHDLS 362 (535)
T ss_pred cccHHHHHHHhhhhhhhhhccccccccccccccccchhhcChhhhhHHHHHHHHHHHHhh-ccCeEEEecCCEEEcCchH
Confidence 000 000 0111 22 7899999999999 7999999999999999999
Q ss_pred HHHhcCCCCCcEEEeec--cCCCCCCCCccc-----ccchhhhcccC-CCCceecchhheeHHHHHHhchHHHHHHHHHH
Q 000402 1452 ELYDMDIKGRPLAYTPF--CDNNKDMDGYRF-----WRQGFWKDHLR-GRPYHISALYVVDLKRFRETAAGDNLRVFYET 1523 (1565)
Q Consensus 1452 EL~~~dl~g~~~a~v~~--~~~~~~m~g~~~-----w~~gyw~~~L~-~~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ 1523 (1565)
|||++||+|+++|||.| |... ...+.++ +...+-+..+. +.|||||||+||||++||++++++++..+++.
T Consensus 363 eLwdiDL~gkviaAV~D~~c~~~-~~~~~~~~~YlNfsnp~i~~~~~p~~cYFNSGVmLINL~~WRe~nITek~~~~Le~ 441 (535)
T PLN02867 363 SLWELDLNGKVVGAVVDSWCGDN-CCPGRKYKDYLNFSHPLISSNLDQERCAWLYGMNVFDLKAWRRTNITEAYHKWLKL 441 (535)
T ss_pred HHHhCcCCCCeEEEEeccccccc-cccchhhhhhccccchhhhccCCCCCcceecceeeeeHHHHHHhcHHHHHHHHHHh
Confidence 99999999999999976 4321 1111111 01111111222 46999999999999999999999999998874
Q ss_pred hcCCC-CCCcCCCCCCchhhh---ccCCCceeEccCCCCC
Q 000402 1524 LSKDP-NSLANLDQLGFWPAS---SQEPIPFFCARLTSPL 1559 (1565)
Q Consensus 1524 ls~d~-~sl~~~DQ~~DllN~---~~~~~~I~~Lp~~~~~ 1559 (1565)
+. ..+...|| |.+|. +|.+ .+..|+..|+.
T Consensus 442 ---n~~~~~~l~dq--d~LN~~LlvF~g-~v~~LD~rWNv 475 (535)
T PLN02867 442 ---SLNSGLQLWQP--GALPPALLAFKG-HVHPIDPSWHV 475 (535)
T ss_pred ---chhcccccccc--cccchHHHHhcC-cEEECChhhcc
Confidence 32 23667899 99996 6654 79999999985
No 20
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=99.82 E-value=2.7e-20 Score=224.83 Aligned_cols=214 Identities=15% Similarity=0.206 Sum_probs=149.8
Q ss_pred CCeeeEEEeecCcchHHHHHHHHHHHHHhCC--CCeEEEEEECCCChhH-HHHHHHHHHHc-CCEEEEEEc---cCCc--
Q 000402 1336 GKTINIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQF-KDVIPHMAQEY-GFEYELITY---KWPT-- 1406 (1565)
Q Consensus 1336 ~~~InIf~va~d~~y~~~~~v~i~Svl~nt~--~~v~F~il~~~lS~~~-k~~l~~l~~~~-~~~i~~v~~---~wp~-- 1406 (1565)
++..+-+++.||+-. -+.|++.|.+.|++ .++-|||+++.++=.- +.++. .+.+ +..|+..++ +|-.
T Consensus 342 dp~l~Hy~ifSDNVL--AaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~--~n~~~~A~V~V~nie~f~wln~~ 417 (657)
T PLN02910 342 DPSLYHYAIFSDNVL--ATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFI--INPPAKATIQVENIDDFKWLNSS 417 (657)
T ss_pred CCcceeEEEEeccee--eEEeehhhhhhcccCccceEEEEecCccccHHHHHHHh--hCCCccceEEEeehhhccccccc
Confidence 455666667777644 45678999999987 4588999998765332 22221 1233 556665554 3311
Q ss_pred ---cccc---c--------------------ccc---cc-HH-HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHh
Q 000402 1407 ---WLHK---Q--------------------KEK---QR-II-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYD 1455 (1565)
Q Consensus 1407 ---~l~~---~--------------------~~~---~r-~~-~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~ 1455 (1565)
.+++ . ..+ .. ++ .+|.|+|||.+|| +++||||||+|+||++||++||+
T Consensus 418 ~~pvl~qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp-~l~KVLYLD~DVVV~gDLseLw~ 496 (657)
T PLN02910 418 YCSVLRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYP-KLEKILFLDDDIVVQKDLTPLWS 496 (657)
T ss_pred ccHHHHHHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhh-hcCeEEEEeCCEEecCchHHHHh
Confidence 0110 0 001 11 22 7899999999999 69999999999999999999999
Q ss_pred cCCCCCcEEEeeccCCC-CCCCCcccccchhhhcccC-CCCceecchhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcC
Q 000402 1456 MDIKGRPLAYTPFCDNN-KDMDGYRFWRQGFWKDHLR-GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLAN 1533 (1565)
Q Consensus 1456 ~dl~g~~~a~v~~~~~~-~~m~g~~~w~~gyw~~~L~-~~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~ 1533 (1565)
+||+|+++|++++|... .+...+.+|.....++++. ..||||+|||||||++||+.++++ ...+++.+. ..+..
T Consensus 497 iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe-~ye~w~eln---~~~~L 572 (657)
T PLN02910 497 IDMQGMVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITG-IYHYWQDLN---EDRTL 572 (657)
T ss_pred CCcCCceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHH-HHHHHHHhc---ccccc
Confidence 99999999999999642 1122222233222233444 569999999999999999999999 444565543 34789
Q ss_pred CCCCCchhh---hccCCCceeEccCCCCCCC
Q 000402 1534 LDQLGFWPA---SSQEPIPFFCARLTSPLKP 1561 (1565)
Q Consensus 1534 ~DQ~~DllN---~~~~~~~I~~Lp~~~~~~~ 1561 (1565)
.|| |.+| .+|.+ .++.|+.+|+...
T Consensus 573 ~dq--gsLPpgLLvF~g-~i~pLD~rWNv~G 600 (657)
T PLN02910 573 WKL--GSLPPGLITFYN-LTYPLDRSWHVLG 600 (657)
T ss_pred ccc--CCCChHHHHHhC-ceeecCchheecC
Confidence 999 9999 56665 6999999998753
No 21
>PLN00176 galactinol synthase
Probab=99.66 E-value=8.2e-16 Score=180.42 Aligned_cols=195 Identities=13% Similarity=0.072 Sum_probs=133.5
Q ss_pred eecCcchHHHHHHHHHHHHHhCCCCeEEEEEE-CCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccccccccHHHHHH
Q 000402 1344 IASGHLYERFLKIMILSVLKNTCRPVKFWFIK-NYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYK 1422 (1565)
Q Consensus 1344 va~d~~y~~~~~v~i~Svl~nt~~~v~F~il~-~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~ 1422 (1565)
++++..|...+.++..|+.++ ++...+.++. ++++++.++.|. ..|..+.-|+.--|..-..+....+....|.
T Consensus 29 L~~n~~Y~~Ga~vL~~SLr~~-~s~~~lVvlVt~dVp~e~r~~L~----~~g~~V~~V~~i~~~~~~~~~~~~~~~i~~t 103 (333)
T PLN00176 29 LAGNGDYVKGVVGLAKGLRKV-KSAYPLVVAVLPDVPEEHRRILV----SQGCIVREIEPVYPPENQTQFAMAYYVINYS 103 (333)
T ss_pred EecCcchHHHHHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHHHH----HcCCEEEEecccCCcccccccccchhhhhhh
Confidence 357889999999999999766 4456655544 789998877765 3466555443321211111111223345688
Q ss_pred HHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCcEEEeeccCCCCCCCC-cccccchhhhc---------ccC-
Q 000402 1423 ILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDG-YRFWRQGFWKD---------HLR- 1491 (1565)
Q Consensus 1423 rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~~~a~v~~~~~~~~m~g-~~~w~~gyw~~---------~L~- 1491 (1565)
+|++..+. +++||||||+|+||.++|.|||+++. ..+|||.+|..+..... .+|| -||... .++
T Consensus 104 Kl~iw~l~--~ydkvlyLDaD~lv~~nid~Lf~~~~--~~~aAV~dc~~~~~~~~~p~~~-~~~c~~~~~~~~wp~~~g~ 178 (333)
T PLN00176 104 KLRIWEFV--EYSKMIYLDGDIQVFENIDHLFDLPD--GYFYAVMDCFCEKTWSHTPQYK-IGYCQQCPDKVTWPAELGP 178 (333)
T ss_pred hhhhcccc--ccceEEEecCCEEeecChHHHhcCCC--cceEEEeccccccccccccccc-ccccccchhhccchhhccC
Confidence 89998876 69999999999999999999999853 37899999854321111 1222 233322 122
Q ss_pred -CCCceecchhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCCCchhhhccCCCceeEccCCCCC
Q 000402 1492 -GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEPIPFFCARLTSPL 1559 (1565)
Q Consensus 1492 -~~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~~~I~~Lp~~~~~ 1559 (1565)
...||||||||+|...|+...+.+ ..+ .++ ...++|| |+||.+|.+ ....||..||+
T Consensus 179 ~~~~yFNSGVlvinps~~~~~~ll~----~l~---~~~-~~~f~DQ--D~LN~~F~~-~~~~Lp~~YN~ 236 (333)
T PLN00176 179 PPPLYFNAGMFVFEPSLSTYEDLLE----TLK---ITP-PTPFAEQ--DFLNMFFRD-IYKPIPPVYNL 236 (333)
T ss_pred CCCCeEEeEEEEEEcCHHHHHHHHH----HHH---hcC-CCCCCCH--HHHHHHHcC-cEEECCchhcC
Confidence 246999999999999999866544 333 122 3688999 999999986 68889998886
No 22
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.65 E-value=6.6e-16 Score=176.37 Aligned_cols=179 Identities=18% Similarity=0.197 Sum_probs=132.8
Q ss_pred EEeecCcchHHHHHHHHHHHHHhCCCCeEEEEEE-CCCChhHHHHHHHHHHHcCCEEEEEE-ccCCcccccccccccHHH
Q 000402 1342 FSIASGHLYERFLKIMILSVLKNTCRPVKFWFIK-NYLSPQFKDVIPHMAQEYGFEYELIT-YKWPTWLHKQKEKQRIIW 1419 (1565)
Q Consensus 1342 f~va~d~~y~~~~~v~i~Svl~nt~~~v~F~il~-~~lS~~~k~~l~~l~~~~~~~i~~v~-~~wp~~l~~~~~~~r~~~ 1419 (1565)
+++++|++|..++.+++.|+++|++ .+.++++. +++|++.++.|+.+ +..+..+. ++++.... .....+...
T Consensus 4 ~t~~~~~~Y~~~a~vl~~SL~~~~~-~~~~~vl~~~~is~~~~~~L~~~----~~~~~~v~~i~~~~~~~-~~~~~~~~~ 77 (240)
T cd02537 4 VTLLTNDDYLPGALVLGYSLRKVGS-SYDLVVLVTPGVSEESREALEEV----GWIVREVEPIDPPDSAN-LLKRPRFKD 77 (240)
T ss_pred EEEecChhHHHHHHHHHHHHHhcCC-CCCEEEEECCCCCHHHHHHHHHc----CCEEEecCccCCcchhh-hccchHHHH
Confidence 5667899999999999999999976 46777777 57999999888865 33333222 23232111 111233447
Q ss_pred HHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCcEEEeeccCCCCCCCCcccccchhhhcccCCCCceecc
Q 000402 1420 AYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHISA 1499 (1565)
Q Consensus 1420 ~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~~~a~v~~~~~~~~m~g~~~w~~gyw~~~L~~~~YfnSG 1499 (1565)
+|.||++..+. +++||||||+|++|.+||.+||++ +..+|+++++. | ..|||||
T Consensus 78 ~~~kl~~~~l~--~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~---------------~------~~~fNsG 131 (240)
T cd02537 78 TYTKLRLWNLT--EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPDCG---------------W------PDLFNSG 131 (240)
T ss_pred HhHHHHhcccc--ccceEEEEeCCeeEccCHHHHhCC---CCceeeecccC---------------c------cccccce
Confidence 89999999975 599999999999999999999998 66788887641 1 3599999
Q ss_pred hhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCCCchhhhccCCC-ceeEccCCCCCCCC
Q 000402 1500 LYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEPI-PFFCARLTSPLKPK 1562 (1565)
Q Consensus 1500 v~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~~-~I~~Lp~~~~~~~~ 1562 (1565)
||++|... ...+++.+..+. +. ++..+|| |+||.++++. ++..||..||+...
T Consensus 132 v~l~~~~~----~~~~~~~~~~~~---~~-~~~~~DQ--diLN~~~~~~~~~~~l~~~yN~~~~ 185 (240)
T cd02537 132 VFVLKPSE----ETFNDLLDALQD---TP-SFDGGDQ--GLLNSYFSDRGIWKRLPFTYNALKP 185 (240)
T ss_pred EEEEcCCH----HHHHHHHHHHhc---cC-CCCCCCH--HHHHHHHcCCCCEeECCcceeeehh
Confidence 99999854 445566665542 32 3788999 9999998763 49999999987543
No 23
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.33 E-value=1e-11 Score=143.11 Aligned_cols=175 Identities=14% Similarity=0.060 Sum_probs=126.0
Q ss_pred eecCcchHHHHHHHHHHHHHhCCCCeEEEEEE-CCCChhHHHHHHH---HHHHcCCEEEEEEccCCcccccccccccHHH
Q 000402 1344 IASGHLYERFLKIMILSVLKNTCRPVKFWFIK-NYLSPQFKDVIPH---MAQEYGFEYELITYKWPTWLHKQKEKQRIIW 1419 (1565)
Q Consensus 1344 va~d~~y~~~~~v~i~Svl~nt~~~v~F~il~-~~lS~~~k~~l~~---l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~ 1419 (1565)
.+++..|...+.++..|+-++.+ +.+.-++. +.++......+.. +...++..+..+...-+ +. ...++..
T Consensus 6 l~Tn~~YL~gAlvL~~sLr~~gs-~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~----~~-~~~~~~~ 79 (278)
T cd06914 6 YATNADYLCNALILFEQLRRLGS-KAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIA----SG-GDAYWAK 79 (278)
T ss_pred EecChhHHHHHHHHHHHHHHhCC-CCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccC----CC-CCccHHH
Confidence 45789999999888888865544 66666666 5666544332211 22445666655544211 11 3356667
Q ss_pred HHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCcEEEeeccCCCCCCCCcccccchhhhcccCCCCceecc
Q 000402 1420 AYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHISA 1499 (1565)
Q Consensus 1420 ~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~~~a~v~~~~~~~~m~g~~~w~~gyw~~~L~~~~YfnSG 1499 (1565)
+|.||.+..+ + +++||||||+|++|.++|.|||+++.. ..+|++ . .|| |||||
T Consensus 80 ~~tKl~~~~l-~-~y~kvlyLDaD~l~~~~ideLf~~~~~-~~~Aap-~---------------~~~--------~FNSG 132 (278)
T cd06914 80 SLTKLRAFNQ-T-EYDRIIYFDSDSIIRHPMDELFFLPNY-IKFAAP-R---------------AYW--------KFASH 132 (278)
T ss_pred HHHHHHhccc-c-ceeeEEEecCChhhhcChHHHhcCCcc-cceeee-c---------------Ccc--------eecce
Confidence 7999999998 3 699999999999999999999999843 345654 2 134 99999
Q ss_pred hhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCCCchhhhccCCCc------eeEccCC-CCC
Q 000402 1500 LYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEPIP------FFCARLT-SPL 1559 (1565)
Q Consensus 1500 v~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~~~------I~~Lp~~-~~~ 1559 (1565)
|||||+.+|+..++.+++..... .+ ....|| |+||.++.+-. +..||.+ +++
T Consensus 133 vmvi~ps~~~~~~l~~~~~~~~~---~~---~~~~DQ--diLN~~~~~~~~~~~~~~~~Lp~~~y~l 191 (278)
T cd06914 133 LMVIKPSKEAFKELMTEILPAYL---NK---KNEYDM--DLINEEFYNSKQLFKPSVLVLPHRQYGL 191 (278)
T ss_pred eEEEeCCHHHHHHHHHHHHHhcc---cC---CCCCCh--HHHHHHHhCCccccCcceEEcCcccccc
Confidence 99999999999998888887643 12 367899 99999998742 8888875 554
No 24
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=96.83 E-value=0.65 Score=62.51 Aligned_cols=183 Identities=13% Similarity=0.117 Sum_probs=96.7
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCccEEEcceeccCchH---HHHHHHHHHHHHHHHHHHccccCChhhHHHHH-HhccccC
Q 000402 677 TFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSESSEE---ALLNAMNDELQRIQEQVYYGNINSYTDVLEKV-LSESGIN 752 (1565)
Q Consensus 677 ~~~~~~~~~~~f~~Rlgi~~~~p~vlvNG~~~~~~~~---~l~~~i~~el~~lq~~v~~g~l~d~~~~~~~~-l~~~~~~ 752 (1565)
+...-+++-++.+++.|+.......++||...+.+.- .|+..+++|.+.+-+-...| .+...+...+ +......
T Consensus 336 ~lr~ei~~nq~~~~~~~v~~g~~~L~INGl~~di~~~DlfsLld~lk~E~~~~~~f~~lg--i~~~~l~~~l~l~~~~~~ 413 (1470)
T KOG1879|consen 336 DLRTEIEENQSKLEAKGVPPGDNALFINGLNLDIDSLDLFSLLDLLKQEKKMLNGFHNLG--IDGEFLSKLLKLDLSKSE 413 (1470)
T ss_pred HHHHHHHHhhhhhhhcCCCCCcceeEecccccCcccccHHHHHHHHHHHHHHHHHHHhcC--CchhHHHHhhccccCccc
Confidence 4444455567777777997666789999988877763 77888999988887666656 2333333222 1111110
Q ss_pred ccCceeecCCCCCCeEeecccccccchhHhhcCccccCCCCCCCCc----c-eEEEEEeeCCCHhHHHHHHHHHHHHhcC
Q 000402 753 RYNPQIITDAKVKPKFISLASSFLGRETELKDINYLHSPETVDDVK----P-VTHLLAVDVTSKKGMKLLHEGIRFLIGG 827 (1565)
Q Consensus 753 r~n~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~t~~lv~D~~s~~g~~~l~~al~~~~~~ 827 (1565)
. -++-+.-....+.|++.-........+-+++.-+-.|.-.+... + -++.+|.|..++.++.++..+..+. ..
T Consensus 414 ~-~~~~~Dir~~~v~~vNdlEsD~~Y~~w~~Svq~lL~P~~PG~lr~IrkNl~nlV~vIDpa~~~~~~~l~~~~~f~-s~ 491 (1470)
T KOG1879|consen 414 K-QEYAVDIRSEAVIWVNDLESDPQYDRWPSSVQLLLKPTFPGQLRPIRKNLFNLVFVIDPATPEDLEFLKTARNFV-SH 491 (1470)
T ss_pred c-cceeeecccccceeecccccchhhcchhHHHHHHhCCCCCCcchHHHhhheeEEEEecCCCccchHHHHHHHHHh-cC
Confidence 0 01101000112334443332111112222222221221122222 2 3445788999999999988877765 44
Q ss_pred CCceEEEEEEcCCCCCCCchhHHHHHHHHhhhccch
Q 000402 828 SNGARLGVLFSASREADLPSIIFVKAFEITASTYSH 863 (1565)
Q Consensus 828 ~~~~Rv~~i~n~~~~~~~~~~~~~~~~~a~~~~~~~ 863 (1565)
...+|+|+|.-..++..+...-+..++..++...+.
T Consensus 492 ~~P~R~G~v~~~nd~~~d~~~d~g~av~~af~yi~~ 527 (1470)
T KOG1879|consen 492 QIPVRIGFVFIANDDDEDGVTDLGVAVLRAFNYISE 527 (1470)
T ss_pred CCceEEEEEEEecCCcccchhhHHHHHHHHHHHHHh
Confidence 568999999765543322222344445555544433
No 25
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=94.75 E-value=0.059 Score=63.31 Aligned_cols=109 Identities=18% Similarity=0.231 Sum_probs=68.1
Q ss_pred EEEeecCcchHHHHHHHHHHHHHhC-CCCeEEEEEE-CCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccccccccHH
Q 000402 1341 IFSIASGHLYERFLKIMILSVLKNT-CRPVKFWFIK-NYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRII 1418 (1565)
Q Consensus 1341 If~va~d~~y~~~~~v~i~Svl~nt-~~~v~F~il~-~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~ 1418 (1565)
|+.+ .+..|...+..+|..+-+.. +-||-+|.-. +.+++++++.|.. ..++.+++.. +..........-..
T Consensus 4 IVi~-~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~-----~q~v~~vd~~-~~~~~~~~~~~~~~ 76 (271)
T PF11051_consen 4 IVIT-AGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLP-----DQDVWFVDAS-CVIDPDYLGKSFSK 76 (271)
T ss_pred EEEE-ecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhh-----hhhhheecce-EEeecccccccccc
Confidence 4444 35577777766666665432 2478888776 7899999888766 2334444443 22111111110000
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcC
Q 000402 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMD 1457 (1565)
Q Consensus 1419 ~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~d 1457 (1565)
..|..=.+..+|- ..+.|||||+|.|...|+..||+.+
T Consensus 77 ~~~~~K~lA~l~s-sFeevllLDaD~vpl~~p~~lF~~~ 114 (271)
T PF11051_consen 77 KGFQNKWLALLFS-SFEEVLLLDADNVPLVDPEKLFESE 114 (271)
T ss_pred CCchhhhhhhhhC-CcceEEEEcCCcccccCHHHHhcCc
Confidence 0455555667785 7999999999999999999999744
No 26
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=92.81 E-value=4.7 Score=43.61 Aligned_cols=144 Identities=8% Similarity=0.011 Sum_probs=86.1
Q ss_pred ccccceEEEEcCCCcccHHHHHHHHHHHhcc-cceEEEEEeeecccccchhccCCCCCCCCccCCCCCCcchhHHHHHHH
Q 000402 531 KNLFHAVYVLDPATVCGLEVIDMIMSLYENH-FPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLF 609 (1565)
Q Consensus 531 rNl~nlVfviDps~~~~~~~l~~l~~~~~~g-~PiR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~iar~f 609 (1565)
..=..++.+.||..+.-..+-..+..++++. --+|+.++|+... ...+...++++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------------------~~~~~~aa~a~ 69 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVVFG------------------------GGEGEPLARAF 69 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCccc------------------------cccchHHHHHH
Confidence 4456799999999998877777777665543 2467777887643 01235566777
Q ss_pred HHHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhhHhHHHhhccCCCCCCChhhhhhhhccchhhHHHHHHHHHH
Q 000402 610 LFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFV 689 (1565)
Q Consensus 610 ~~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 689 (1565)
+..... |.. ..|...++....... .+..+.+.+.+.. +.. ......+.....+.++...++...+..
T Consensus 70 ~aa~~~-~~~--~~~~~~lf~~~~~~~----~~~~~~~~l~~~a-~~~-----Gl~~~~~~~~~~s~~~~~~i~~~~~~~ 136 (178)
T cd03019 70 YAAEAL-GLE--DKLHAALFEAIHEKR----KRLLDPDDIRKIF-LSQ-----GVDKKKFDAAYNSFSVKALVAKAEKLA 136 (178)
T ss_pred HHHHHc-CcH--hhhhHHHHHHHHHhC----CCCCCHHHHHHHH-HHh-----CCCHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 665443 322 234333332211100 0111222333322 221 123345666677778888888888999
Q ss_pred HHhCCCCCCccEEEcceeccCch
Q 000402 690 FKLGLTKLKCCLLMNGLVSESSE 712 (1565)
Q Consensus 690 ~Rlgi~~~~p~vlvNG~~~~~~~ 712 (1565)
+++|+.+ .|.++|||+.+....
T Consensus 137 ~~~gi~g-TPt~iInG~~~~~~~ 158 (178)
T cd03019 137 KKYKITG-VPAFVVNGKYVVNPS 158 (178)
T ss_pred HHcCCCC-CCeEEECCEEEEChh
Confidence 9999955 699999999776544
No 27
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=92.36 E-value=0.066 Score=61.83 Aligned_cols=51 Identities=25% Similarity=0.369 Sum_probs=35.9
Q ss_pred cccHHHHHHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCcEEEeec
Q 000402 1414 KQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPF 1468 (1565)
Q Consensus 1414 ~~r~~~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~~~a~v~~ 1468 (1565)
..|+...+..|-+=..- +.|||||||+|.||+.++.+|++... +-+++.||
T Consensus 150 ~~rw~~mftKLrVfeqt--EyDRvifLDsDaivlknmDklFd~Pv--yef~a~pD 200 (368)
T COG5597 150 FHRWLDMFTKLRVFEQT--EYDRVIFLDSDAIVLKNMDKLFDYPV--YEFAAAPD 200 (368)
T ss_pred cCcHHHHhHHHHhhhhh--hhceEEEeccchHHhhhhHHHhcchh--hhhccCCc
Confidence 35555555555443333 69999999999999999999998772 23444454
No 28
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=89.40 E-value=9.3 Score=40.53 Aligned_cols=134 Identities=12% Similarity=0.077 Sum_probs=77.9
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHHhc---ccceEEEEEeeecccccchhccCCCCCCCCccCCCCCCcchhHHHHHHHH
Q 000402 534 FHAVYVLDPATVCGLEVIDMIMSLYEN---HFPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFL 610 (1565)
Q Consensus 534 ~nlVfviDps~~~~~~~l~~l~~~~~~---g~PiR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~iar~f~ 610 (1565)
..|+.+.||..+...++...+..++++ .=-++|-++++.-. + ..+...+.+..
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~---------~---------------~~~~~a~~~~~ 69 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD---------K---------------HSSLRAAMAAE 69 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS---------H---------------HHHHHHHHHHH
T ss_pred eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc---------c---------------hhHHHHHHHHH
Confidence 378999999999887766555555444 12667777766433 0 11345566666
Q ss_pred HHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhhHhHHHhhccCCCCCCChhhhhhhhccchhhHHHHHHHHHHH
Q 000402 611 FIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVF 690 (1565)
Q Consensus 611 ~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 690 (1565)
.+.+. | ..+.++.+++....... . .. ..+.. +. -.....+...+.+.++...+....++.+
T Consensus 70 ~~~~~-~--~~~~~~~~~~~~~~~~~----~--~~-~~i~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (162)
T PF13462_consen 70 CVADQ-G--KYFWFFHELLFSQQENF----E--NK-KDIAA---NA------GGSNEQFNKCLNSDEIKAQLEADSQLAR 130 (162)
T ss_dssp HHHHH-T--HHHHHHHHHHHHHCHST----S--SH-HHHHH---HT------TSHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHH-h--HHHHHHHHHHHHhhhcc----c--hh-HHHHH---Hc------CCCHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 66555 4 55566666543322110 0 01 11110 00 0112334455566678888888889999
Q ss_pred HhCCCCCCccEEEcceeccCc
Q 000402 691 KLGLTKLKCCLLMNGLVSESS 711 (1565)
Q Consensus 691 Rlgi~~~~p~vlvNG~~~~~~ 711 (1565)
+.||. ..|.++|||+.++..
T Consensus 131 ~~~i~-~tPt~~inG~~~~~~ 150 (162)
T PF13462_consen 131 QLGIT-GTPTFFINGKYVVGP 150 (162)
T ss_dssp HHT-S-SSSEEEETTCEEETT
T ss_pred HcCCc-cccEEEECCEEeCCC
Confidence 99995 469999999998643
No 29
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=87.94 E-value=13 Score=38.84 Aligned_cols=136 Identities=15% Similarity=0.136 Sum_probs=81.4
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHHhcccc-eEEEEEeeecccccchhccCCCCCCCCccCCCCCCcchhHHHHHHHHHH
Q 000402 534 FHAVYVLDPATVCGLEVIDMIMSLYENHFP-LRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLFI 612 (1565)
Q Consensus 534 ~nlVfviDps~~~~~~~l~~l~~~~~~g~P-iR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~iar~f~~l 612 (1565)
..++++.||..+.-..+-..+..++... | +|+=+.++.-. + ..+...+++...+
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~p~~---------~---------------~~~~~~~~~~~~~ 61 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFKEFPIL---------G---------------ESSVLAARVALAV 61 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEeCCcc---------C---------------cchHHHHHHHHHH
Confidence 4688999999998887777777654332 3 34444433211 0 1234455665555
Q ss_pred HHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhhHhHHHhhccCCCCCCChhhhhhhhccchhhHHHHHHHHHHHHh
Q 000402 613 KESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFKL 692 (1565)
Q Consensus 613 ~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Rl 692 (1565)
.+ .+......|...++..... .+.+.+.+.. +.. ..+.+.+...+.++.+...++...+..+++
T Consensus 62 ~~-~~~~~~~~~~~~lf~~~~~---------~~~~~l~~~a-~~~-----gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (154)
T cd03023 62 WK-NGPGKYLEFHNALMATRGR---------LNEESLLRIA-KKA-----GLDEAKLKKDMDDPEIEATIDKNRQLARAL 125 (154)
T ss_pred HH-hChhHHHHHHHHHHhcCCC---------CCHHHHHHHH-HHc-----CCCHHHHHHHhhChHHHHHHHHHHHHHHHc
Confidence 54 3555667777777653211 1112222211 111 133445666666777888888888899999
Q ss_pred CCCCCCccEEEcceeccCc
Q 000402 693 GLTKLKCCLLMNGLVSESS 711 (1565)
Q Consensus 693 gi~~~~p~vlvNG~~~~~~ 711 (1565)
|+.+ .|.++|||..+...
T Consensus 126 gi~g-tPt~~v~g~~~~G~ 143 (154)
T cd03023 126 GITG-TPAFIIGDTVIPGA 143 (154)
T ss_pred CCCc-CCeEEECCEEecCC
Confidence 9965 69999999987643
No 30
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=84.62 E-value=3.3 Score=39.01 Aligned_cols=52 Identities=17% Similarity=0.401 Sum_probs=37.5
Q ss_pred EEEEeccCCCCCCCCeEEEEecCCCCcccceEEEecceeeeee-eCCceeEEEe
Q 000402 1182 LTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMK-VSPGVWYLQL 1234 (1565)
Q Consensus 1182 iEGha~d~~~~pprGlqL~L~~~~~~~~~DTiVManlGYFQlk-a~PG~w~l~l 1234 (1565)
|.|.-+|.++.|..|..+.|.+..+... .+.+=..-|+|.|. ..||-|.|.+
T Consensus 2 I~G~V~d~~g~pv~~a~V~l~~~~~~~~-~~~~Td~~G~f~~~~l~~g~Y~l~v 54 (82)
T PF13620_consen 2 ISGTVTDATGQPVPGATVTLTDQDGGTV-YTTTTDSDGRFSFEGLPPGTYTLRV 54 (82)
T ss_dssp EEEEEEETTSCBHTT-EEEET--TTTEC-CEEE--TTSEEEEEEE-SEEEEEEE
T ss_pred EEEEEEcCCCCCcCCEEEEEEEeeCCCE-EEEEECCCceEEEEccCCEeEEEEE
Confidence 7899999866999999999987655543 44444444999998 9999999987
No 31
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=83.24 E-value=19 Score=42.16 Aligned_cols=197 Identities=16% Similarity=0.150 Sum_probs=103.9
Q ss_pred cCCeeeEEEeecCcchHHHHHHHHHHHHHhC--CCCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEc----cCCccc
Q 000402 1335 HGKTINIFSIASGHLYERFLKIMILSVLKNT--CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITY----KWPTWL 1408 (1565)
Q Consensus 1335 ~~~~InIf~va~d~~y~~~~~v~i~Svl~nt--~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~----~wp~~l 1408 (1565)
.+-+|-|.++|.| .|..++.--+.|.=+|- ..+|++||+++.-+. ++.+.-.-+.++..+.+ .||.
T Consensus 32 ~n~tIgl~vfatG-kY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~-----~p~v~lg~~r~~~V~~v~~~~~W~~-- 103 (271)
T cd02515 32 QNITIGLTVFAVG-KYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAA-----VPEVELGPGRRLTVLKIAEESRWQD-- 103 (271)
T ss_pred cCCEEEEEEEEec-cHHHHHHHHHHHHHHhccCCCeeEEEEEeCCccc-----CcccccCCCceeEEEEeccccCCcH--
Confidence 4667999888776 89889999999998886 468999999985332 22222112344444444 3432
Q ss_pred ccccccccHHHHHHHHhhcccCCCCCCeEEEEeCceeeccCch-HHHhcCCCCCcEEEe-eccCCCCCCCCcccccchhh
Q 000402 1409 HKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMG-ELYDMDIKGRPLAYT-PFCDNNKDMDGYRFWRQGFW 1486 (1565)
Q Consensus 1409 ~~~~~~~r~~~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~-EL~~~dl~g~~~a~v-~~~~~~~~m~g~~~w~~gyw 1486 (1565)
..-++...+.......++ .++|-+.++|+|+++..++. |.. |..+|.. |--.. +.-..|.|-+..--
T Consensus 104 ----~sl~Rm~~~~~~~~~~~~-~e~DYlF~~dvd~~F~~~ig~E~L-----g~lva~lHp~~y~-~~~~~fpYERrp~S 172 (271)
T cd02515 104 ----ISMRRMKTLADHIADRIG-HEVDYLFCMDVDMVFQGPFGVETL-----GDSVAQLHPWWYG-KPRKQFPYERRPSS 172 (271)
T ss_pred ----HHHHHHHHHHHHHHHhhc-ccCCEEEEeeCCceEeecCCHHHh-----hhhheecChhhhc-CCCCCCCCcCCCCc
Confidence 111111122222223334 57999999999999998876 332 1122221 11000 00111222211111
Q ss_pred hccc---CCCCceecchhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCCCchhhhccCCC-ceeEcc
Q 000402 1487 KDHL---RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEPI-PFFCAR 1554 (1565)
Q Consensus 1487 ~~~L---~~~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~~-~I~~Lp 1554 (1565)
..++ .|..|+-.|++==-.+.+-+. .+.|......=.++...-.++|. -=||..+... |++-|+
T Consensus 173 ~AyIp~~eGdfYy~Ga~~GG~~~~vl~l--~~~c~~~i~~D~~n~I~A~wHDE--SHLNkYf~~~Kp~KiLS 240 (271)
T cd02515 173 AAYIPEGEGDFYYHGAVFGGSVEEVYRL--TRACHEGILADKANGIEARWHDE--SHLNKYFLLHKPTKVLS 240 (271)
T ss_pred cccccCCCCCeEEeeeecCccHHHHHHH--HHHHHHHHHHHHhCCceEEeecH--hHhHHHHhhCCCCeecC
Confidence 1122 367888888874333333332 23444333321123333488999 9999866442 344444
No 32
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=76.01 E-value=6.3 Score=41.84 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=37.5
Q ss_pred ceeccCCCCCCceEEEEeecCchhHHHHHHHHHHH----HHcCCeeEEEeecCCC
Q 000402 218 DHIHAESSISSRTAILYGALGSDCFKEFHINLVQA----AKEGKVMYVVRPVLPS 268 (1565)
Q Consensus 218 Dhv~~~s~~~~p~vILYg~i~s~~F~~fh~~L~~~----a~~gki~YV~R~~~~~ 268 (1565)
+.++| ...+.++|+.|.++..+--+.||..+.+. ...|+++|++||++..
T Consensus 4 ~~~~G-~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 4 DPTIG-NPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp SEEES--TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred CCeec-CCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 55666 33355689999999999988898888543 2369999999999765
No 33
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=74.64 E-value=6.6 Score=44.17 Aligned_cols=109 Identities=16% Similarity=0.053 Sum_probs=61.4
Q ss_pred HHHHhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCcEEEeeccCCCCCCCCcccccchhhhcccCCCCceecch
Q 000402 1421 YKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHISAL 1500 (1565)
Q Consensus 1421 y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~~~a~v~~~~~~~~m~g~~~w~~gyw~~~L~~~~YfnSGv 1500 (1565)
.|--++-.++-..+ .|+|+|+|++...|+.+++ +-.+.-+.+..++..... .+ +....+|+|+
T Consensus 54 ~K~~~~~~~L~~G~-~vl~~D~Dvv~~~dp~~~~--~~~~~Di~~~~d~~~~~~-----~~---------~~~~~~n~G~ 116 (212)
T PF03407_consen 54 LKPKVLLDLLELGY-DVLFSDADVVWLRDPLPYF--ENPDADILFSSDGWDGTN-----SD---------RNGNLVNTGF 116 (212)
T ss_pred HHHHHHHHHHHcCC-ceEEecCCEEEecCcHHhh--ccCCCceEEecCCCcccc-----hh---------hcCCccccce
Confidence 44445555665554 5999999999999999999 224444555545532210 00 1123448999
Q ss_pred hheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCCCchhhhccCC-------CceeEccC
Q 000402 1501 YVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEP-------IPFFCARL 1555 (1565)
Q Consensus 1501 ~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~-------~~I~~Lp~ 1555 (1565)
|.+--.. +-..+-+.+...+. ..+ ...|| .++|.++.. +.+..||.
T Consensus 117 ~~~r~t~-~~~~~~~~w~~~~~---~~~---~~~DQ--~~~n~~l~~~~~~~~~~~~~~L~~ 169 (212)
T PF03407_consen 117 YYFRPTP-RTIAFLEDWLERMA---ESP---GCWDQ--QAFNELLREQAARYGGLRVRFLPP 169 (212)
T ss_pred EEEecCH-HHHHHHHHHHHHHH---hCC---CcchH--HHHHHHHHhcccCCcCcEEEEeCH
Confidence 9875443 22222333333332 221 22399 999987754 34556654
No 34
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=74.39 E-value=32 Score=32.90 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=37.7
Q ss_pred EEEEeccCCC-CCCCCeEEEEecCCCCcccceEEEec-ceeeeeeeCCceeEEEe
Q 000402 1182 LTGHCSEKDH-EPPQGLQLILGTKSTPHLVDTLVMAN-LGYWQMKVSPGVWYLQL 1234 (1565)
Q Consensus 1182 iEGha~d~~~-~pprGlqL~L~~~~~~~~~DTiVMan-lGYFQlka~PG~w~l~l 1234 (1565)
|.|.-.|..+ .|..|+-+.+.+.. .-+++| -|+|.|++++|-+.|.+
T Consensus 2 i~G~V~d~~t~~pl~~a~V~~~~~~------~~~~Td~~G~F~i~~~~g~~~l~i 50 (88)
T PF13715_consen 2 ISGKVVDSDTGEPLPGATVYLKNTK------KGTVTDENGRFSIKLPEGDYTLKI 50 (88)
T ss_pred EEEEEEECCCCCCccCeEEEEeCCc------ceEEECCCeEEEEEEcCCCeEEEE
Confidence 5788889885 99999999998764 223333 39999999999999987
No 35
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=74.37 E-value=1.3e+02 Score=32.34 Aligned_cols=144 Identities=10% Similarity=0.083 Sum_probs=68.6
Q ss_pred CcceEEEEEeeCCCHhHHHHHHHHHHHHhcCCCceEEEEEEcCCCCCCCchhHHHHHHHHhhhccchhhhHHHHHHHHhh
Q 000402 797 VKPVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCS 876 (1565)
Q Consensus 797 ~~~~t~~lv~D~~s~~g~~~l~~al~~~~~~~~~~Rv~~i~n~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~l~~ 876 (1565)
..++++..+.||.++-....-...-+.+++...++|+.++|.+-.... .....+++.++.. .. ....+...+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~aa~a~~aa~~-~~---~~~~~~~~lf~ 87 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVVFGGGE--GEPLARAFYAAEA-LG---LEDKLHAALFE 87 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCcccccc--chHHHHHHHHHHH-cC---cHhhhhHHHHH
Confidence 346888899999999766665544444444445788887775532211 1223333333221 11 11122222222
Q ss_pred hhhhhhhhcccccccchHHHHHHHHHHHhhcCCChHhHhhhcCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEE
Q 000402 877 FYERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRV 956 (1565)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv~NGR~ 956 (1565)
..... +....+ .+.+.+.+...+++.+.+...+.+- .....+.+... ....+|+. |.+.+++||+.
T Consensus 88 ~~~~~--------~~~~~~-~~~l~~~a~~~Gl~~~~~~~~~~s~---~~~~~i~~~~~-~~~~~gi~-gTPt~iInG~~ 153 (178)
T cd03019 88 AIHEK--------RKRLLD-PDDIRKIFLSQGVDKKKFDAAYNSF---SVKALVAKAEK-LAKKYKIT-GVPAFVVNGKY 153 (178)
T ss_pred HHHHh--------CCCCCC-HHHHHHHHHHhCCCHHHHHHHHhCH---HHHHHHHHHHH-HHHHcCCC-CCCeEEECCEE
Confidence 11000 000000 1223344555667666665544321 12122222222 23345765 88999999999
Q ss_pred ecCC
Q 000402 957 TFPI 960 (1565)
Q Consensus 957 i~~~ 960 (1565)
+...
T Consensus 154 ~~~~ 157 (178)
T cd03019 154 VVNP 157 (178)
T ss_pred EECh
Confidence 8543
No 36
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=72.78 E-value=20 Score=34.59 Aligned_cols=54 Identities=26% Similarity=0.461 Sum_probs=46.1
Q ss_pred eEEEEEEeccCCCCCCCCeEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 000402 1179 ALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 1234 (1565)
Q Consensus 1179 ~iliEGha~d~~~~pprGlqL~L~~~~~~~~~DTiVManlGYFQlka~PG~w~l~l 1234 (1565)
-.+|.|... ...+|..|.-.-|.++++.-..+..+-++ |=|-|=|.||.|.++.
T Consensus 7 e~VItG~V~-~~G~Pv~gAyVRLLD~sgEFtaEvvts~~-G~FRFfaapG~WtvRa 60 (85)
T PF07210_consen 7 ETVITGRVT-RDGEPVGGAYVRLLDSSGEFTAEVVTSAT-GDFRFFAAPGSWTVRA 60 (85)
T ss_pred eEEEEEEEe-cCCcCCCCeEEEEEcCCCCeEEEEEecCC-ccEEEEeCCCceEEEE
Confidence 568999987 44589999999999988887777777777 9999999999999985
No 37
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=72.50 E-value=55 Score=32.77 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccccccccHHHHHHHHhhcccC
Q 000402 1351 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1430 (1565)
Q Consensus 1351 ~~~~~v~i~Svl~nt~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfLd~Lf 1430 (1565)
...+..++.|+.+....+..++++.++-+++..+.+..+... ...+..+... .......+..+. +...
T Consensus 9 ~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~~~g~~~~~~~~-~~~~- 76 (156)
T cd00761 9 EPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINE---------ENQGLAAARNAG-LKAA- 76 (156)
T ss_pred HHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEec---------CCCChHHHHHHH-HHHh-
Confidence 677888999999887667899999998888887777776643 1112222111 011111111101 1111
Q ss_pred CCCCCeEEEEeCceeeccCchH
Q 000402 1431 PLSLEKVIFVDADQVVRADMGE 1452 (1565)
Q Consensus 1431 P~~vdkVIYLD~D~Iv~~Dl~E 1452 (1565)
..+.++++|+|.++..+.-+
T Consensus 77 --~~d~v~~~d~D~~~~~~~~~ 96 (156)
T cd00761 77 --RGEYILFLDADDLLLPDWLE 96 (156)
T ss_pred --cCCEEEEECCCCccCccHHH
Confidence 58999999999988766444
No 38
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=70.87 E-value=30 Score=41.71 Aligned_cols=202 Identities=14% Similarity=0.065 Sum_probs=90.7
Q ss_pred cCCeeeEEEeecCcchHHHHHHHHHHHHHhC--CCCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCccccccc
Q 000402 1335 HGKTINIFSIASGHLYERFLKIMILSVLKNT--CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQK 1412 (1565)
Q Consensus 1335 ~~~~InIf~va~d~~y~~~~~v~i~Svl~nt--~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~ 1412 (1565)
.+-+|=+.++|.| .|..++.--+.|.=+|= ..+|+|||+++..+. ++.+.-.-+-.+..+.+. ...+=|-
T Consensus 97 ~n~tIGL~vfA~G-kY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~~-----vP~i~l~~~r~~~V~~v~--~~~~Wqd 168 (337)
T PF03414_consen 97 QNITIGLTVFATG-KYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPSK-----VPRIELGPGRRLKVFEVQ--EEKRWQD 168 (337)
T ss_dssp CT-EEEEEEEE-C-CHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GGG-----S------TTEEEEEEE-S--GGSSHHH
T ss_pred cCceEEEEEEecc-cHHHHHHHHHHhHHHhccCCcEEEEEEEeCchhh-----CCccccCCCceeEEEEec--ccCCCcc
Confidence 4556777776776 89889999999998875 478999999986442 344332224455555552 1011010
Q ss_pred ccccHHHHHHHHhhcccCCCCCCeEEEEeCceeeccCchH-HHhcCCCCCcEEEeeccCCCCCCCCcccccchhhhccc-
Q 000402 1413 EKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGE-LYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL- 1490 (1565)
Q Consensus 1413 ~~~r~~~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~Dl~E-L~~~dl~g~~~a~v~~~~~~~~m~g~~~w~~gyw~~~L- 1490 (1565)
..-+.+..........++ .++|-+.++|+|++++.++.. .. |..+|..--..-...-..|.|-+..--..++
T Consensus 169 ~sm~Rm~~i~~~i~~~~~-~EvDYLFc~dvd~~F~~~vGvE~L-----g~lva~LHp~~y~~~~~~FpYERrp~S~AyIp 242 (337)
T PF03414_consen 169 ISMMRMEMISEHIEQHIQ-HEVDYLFCMDVDMVFQDHVGVEIL-----GDLVATLHPWFYFKPRESFPYERRPKSQAYIP 242 (337)
T ss_dssp HHHHHHHHHHHHHHHCHH-HH-SEEEEEESSEEE-S-B-GGG------SSEEEEESTTTTTSTGGGS--B-STTSTTB--
T ss_pred chhHHHHHHHHHHHHHHh-hcCCEEEEEecceEEecccCHHHH-----HHHHHHhCHHHHCCChhhCccccCcccccccc
Confidence 111111111111223344 579999999999999988763 22 4455543211101111122222211111123
Q ss_pred --CCCCceecchhheeHHHHHHhchHHHHHHHHHHhcCCCCCCcCCCCCCchhhhcc-CCCceeEcc
Q 000402 1491 --RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQ-EPIPFFCAR 1554 (1565)
Q Consensus 1491 --~~~~YfnSGv~vinL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~-~~~~I~~Lp 1554 (1565)
+|.+|+-+|++===..++-+. .+.|...+..=.++.-.-.++|. -=||-.+ .+-|.+-|+
T Consensus 243 ~~eGDfYY~ga~fGGt~~~vl~L--t~~c~~~i~~D~~n~I~A~WhDE--SHLNKYfl~~KPtKvLS 305 (337)
T PF03414_consen 243 YGEGDFYYHGAFFGGTVEEVLRL--TEACHQGIMQDKANGIEALWHDE--SHLNKYFLYHKPTKVLS 305 (337)
T ss_dssp TT--S--EECCEEEECHHHHHHH--HHHHHHHHHHHHHTT---TTCHH--HHHHHHHHHS--SEEE-
T ss_pred CCCCCeEEeceecCCcHHHHHHH--HHHHHHHHHhhhhcCceEeccch--hhhHHHHhhCCCceecC
Confidence 367888888765333333332 23333322221123344578888 8899854 233444443
No 39
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=69.04 E-value=25 Score=36.28 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccccccccHHHHHHHHhhcccC
Q 000402 1351 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1430 (1565)
Q Consensus 1351 ~~~~~v~i~Svl~nt~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfLd~Lf 1430 (1565)
...+.-++.|+.+.+..+..++|+.++-+++..+.+..+.+ .+..++++..... .+...+..+. +...
T Consensus 10 ~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n---------~g~~~~~n~~-~~~a- 77 (169)
T PF00535_consen 10 AEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPEN---------LGFSAARNRG-IKHA- 77 (169)
T ss_dssp TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCC---------SHHHHHHHHH-HHH--
T ss_pred HHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-ccccccccccccc---------cccccccccc-cccc-
Confidence 66777899999999777899999999888888888888876 4566666655411 1222222222 1222
Q ss_pred CCCCCeEEEEeCceeeccC-chHHHhc
Q 000402 1431 PLSLEKVIFVDADQVVRAD-MGELYDM 1456 (1565)
Q Consensus 1431 P~~vdkVIYLD~D~Iv~~D-l~EL~~~ 1456 (1565)
.-+-|+++|+|.++..+ +.+|++.
T Consensus 78 --~~~~i~~ld~D~~~~~~~l~~l~~~ 102 (169)
T PF00535_consen 78 --KGEYILFLDDDDIISPDWLEELVEA 102 (169)
T ss_dssp ---SSEEEEEETTEEE-TTHHHHHHHH
T ss_pred --ceeEEEEeCCCceEcHHHHHHHHHH
Confidence 24599999999999887 7777744
No 40
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=68.51 E-value=1.5e+02 Score=32.41 Aligned_cols=156 Identities=13% Similarity=0.028 Sum_probs=81.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHHhcccceEEEEEeeecccccchhccCCCCCCCC--------------------ccCC
Q 000402 535 HAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILYSSKFIKSIEINGGELHSPV--------------------AEDD 594 (1565)
Q Consensus 535 nlVfviDps~~~~~~~l~~l~~~~~~g~PiR~GlVp~~~~~~~~~~~~~g~~~~~~--------------------~~~~ 594 (1565)
.++|+.|+.++-..-....+..+.+..-.++|=..|+.=. +.....+|..+... .-..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~~ 78 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR--PDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFNF 78 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS--THHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TBT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc--cccccCCCCCcccChhHHHHHHHHHHHHHHHhcCcccC
Confidence 4789999999987776666666654443466666666422 11111111100000 0000
Q ss_pred CCCCcchhHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhhHhHHHhhccCCCCCCChhhhhhhhc
Q 000402 595 SPVNEDISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEK 674 (1565)
Q Consensus 595 ~~~~~~~s~~iar~f~~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 674 (1565)
.......+....++++++.+. | ....|...++...-.. ..+.-+.+.+.+.+ ++. ....+.++..+.
T Consensus 79 ~~~~~~~s~~a~~~~~~a~~~-~--~~~~~~~al~~a~~~~----~~~i~~~~vl~~~~-~~~-----Gld~~~~~~~~~ 145 (193)
T PF01323_consen 79 PPPFPGNSRPAHRAAYAAQEQ-G--KADAFADALFRAYFVE----GRDISDPDVLAEIA-EEA-----GLDPDEFDAALD 145 (193)
T ss_dssp SSTHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHTS----ST-TSSHHHHHHHH-HHT-----T--HHHHHHHHT
T ss_pred CchhhhhhHHHHHHHHHHHHh-h--hhhHHHHHHHHHHHhc----ccCCCCHHHHHHHH-HHc-----CCcHHHHHHHhc
Confidence 000001345556666666554 3 4444544444322110 01112233334333 222 134456677777
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCCccEEEcce
Q 000402 675 EKTFMDQSQESSMFVFKLGLTKLKCCLLMNGL 706 (1565)
Q Consensus 675 ~~~~~~~~~~~~~f~~Rlgi~~~~p~vlvNG~ 706 (1565)
++.+...+....+-..++|+.+ .|.++|||.
T Consensus 146 ~~~~~~~~~~~~~~a~~~gv~G-vP~~vv~g~ 176 (193)
T PF01323_consen 146 SPEVKAALEEDTAEARQLGVFG-VPTFVVNGK 176 (193)
T ss_dssp SHHHHHHHHHHHHHHHHTTCSS-SSEEEETTT
T ss_pred chHHHHHHHHHHHHHHHcCCcc-cCEEEECCE
Confidence 7788888888888889999965 699999999
No 41
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=67.01 E-value=20 Score=37.86 Aligned_cols=59 Identities=20% Similarity=0.420 Sum_probs=44.3
Q ss_pred eEEEEEEeccCCCCCCCCeEEEEecCC--CCcccceEE---EecceeeeeeeCCceeEEEecCC
Q 000402 1179 ALVLTGHCSEKDHEPPQGLQLILGTKS--TPHLVDTLV---MANLGYWQMKVSPGVWYLQLAPG 1237 (1565)
Q Consensus 1179 ~iliEGha~d~~~~pprGlqL~L~~~~--~~~~~DTiV---ManlGYFQlka~PG~w~l~l~~G 1237 (1565)
+++|.|==.|-.+.|..|-+++|.... ..++..|.. =.+-|||=|.+.||.|.+.|...
T Consensus 2 sV~ISGvL~dg~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG~Y~V~l~~~ 65 (134)
T PF08400_consen 2 SVKISGVLKDGAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEPGVYRVTLKVE 65 (134)
T ss_pred eEEEEEEEeCCCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecCCeEEEEEEEC
Confidence 477888888888899999999997442 223334332 25679999999999999998643
No 42
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=55.68 E-value=69 Score=42.71 Aligned_cols=98 Identities=15% Similarity=0.324 Sum_probs=70.7
Q ss_pred eeEeccCCCCeEEeeecccccCCcccccccCCCcceEEEEEeeeEEEEEEeccCCCCCCCCeEEEEecCCCCcccceEEE
Q 000402 1136 LTMNLDVPEPWLVEPVIAVHDLDNILLEKLGDTRTLQAVFELEALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVM 1215 (1565)
Q Consensus 1136 lTl~~d~P~~WlV~~~~a~~DLDNI~L~~~~~~~~v~a~yeLe~iliEGha~d~~~~pprGlqL~L~~~~~~~~~DTiVM 1215 (1565)
|+|.+..|..|--+|..-..-.|-- -+-. ..+=+.+|.+...-|.|..--....+|+|++.+|++..++ +..|.+=
T Consensus 78 yiLkIspP~GwsfePd~Vel~vDGk-td~C--s~n~DinFhftGFsv~GkVlgaaggGpagV~velrs~e~~-iast~T~ 153 (1165)
T KOG1948|consen 78 YILKISPPAGWSFEPDSVELKVDGK-TDAC--SLNEDINFHFTGFSVRGKVLGAAGGGPAGVLVELRSQEDP-IASTKTE 153 (1165)
T ss_pred EEEEecCCCCccccCceEEEEeccc-cccc--cCCCceEEEEeeeeEeeEEeeccCCCcccceeecccccCc-ceeeEec
Confidence 9999999999999986555443310 0000 1223457888888888887555557999999999988555 7788888
Q ss_pred ecceeeeee-eCCceeEEEecCCC
Q 000402 1216 ANLGYWQMK-VSPGVWYLQLAPGR 1238 (1565)
Q Consensus 1216 anlGYFQlk-a~PG~w~l~l~~Gr 1238 (1565)
++ |=|-|+ +-||-|.++--.++
T Consensus 154 ~~-Gky~f~~iiPG~Yev~ashp~ 176 (1165)
T KOG1948|consen 154 DG-GKYEFRNIIPGKYEVSASHPA 176 (1165)
T ss_pred CC-CeEEEEecCCCceEEeccCcc
Confidence 88 877777 99999998754443
No 43
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=53.28 E-value=26 Score=36.57 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=36.1
Q ss_pred CCCceEEEEeecCchhHHHHHHHHHHH-HHcCCeeEEEeecCCC
Q 000402 226 ISSRTAILYGALGSDCFKEFHINLVQA-AKEGKVMYVVRPVLPS 268 (1565)
Q Consensus 226 ~~~p~vILYg~i~s~~F~~fh~~L~~~-a~~gki~YV~R~~~~~ 268 (1565)
.+.++++.|.|+.-|--+.||..+.+. .+.|++++++|++|..
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p~~ 47 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFPIL 47 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCCcc
Confidence 355689999999999999999999775 4569999999999754
No 44
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=53.21 E-value=2e+02 Score=31.45 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=76.6
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHHhc---ccceEEEEEeeecccccc--hh------------c-cCCCCCC--CCccC
Q 000402 534 FHAVYVLDPATVCGLEVIDMIMSLYEN---HFPLRFGVILYSSKFIKS--IE------------I-NGGELHS--PVAED 593 (1565)
Q Consensus 534 ~nlVfviDps~~~~~~~l~~l~~~~~~---g~PiR~GlVp~~~~~~~~--~~------------~-~~g~~~~--~~~~~ 593 (1565)
+++.++.||.++-.......+..+.++ ++.+++=+.++...+.+. .. . ..|. +. +....
T Consensus 1 ~~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~ 79 (193)
T cd03025 1 LELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQ-PFGEDYLEL 79 (193)
T ss_pred CeEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCC-ccCchhHhc
Confidence 357899999999876655666655544 788886555554431100 00 0 1111 00 00000
Q ss_pred CCCCCcchhHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhhHhHHHhhccCCCCCCChhhhhhhh
Q 000402 594 DSPVNEDISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLE 673 (1565)
Q Consensus 594 ~~~~~~~~s~~iar~f~~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~ 673 (1565)
...+-.+....+++....+. |......|+..+....-.. ..+..+.+.+.+.. +.. ......+....
T Consensus 80 --~~~~~~s~~a~~~~~aa~~~-~~~~~~~~~~~l~~a~~~~----~~~i~~~~~l~~ia-~~~-----Gld~~~~~~~~ 146 (193)
T cd03025 80 --LLFDLDSAPASRAIKAARLQ-GPERLLEMLKAIQRAHYVE----GRDLADTEVLRELA-IEL-----GLDVEEFLEDF 146 (193)
T ss_pred --ccCCCCchHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHc----CCCCCCHHHHHHHH-HHc-----CCCHHHHHHHH
Confidence 00000133444555555433 5555667776665432110 01111122232222 211 12233455566
Q ss_pred ccchhhHHHHHHHHHHHHhCCCCCCccEEEc
Q 000402 674 KEKTFMDQSQESSMFVFKLGLTKLKCCLLMN 704 (1565)
Q Consensus 674 ~~~~~~~~~~~~~~f~~Rlgi~~~~p~vlvN 704 (1565)
.+..+...+....+...++|+.+ .|.++|+
T Consensus 147 ~s~~~~~~l~~~~~~a~~~gv~g-~Ptfvv~ 176 (193)
T cd03025 147 QSDEAKQAIQEDQKLARELGING-FPTLVLE 176 (193)
T ss_pred cChHHHHHHHHHHHHHHHcCCCc-cCEEEEE
Confidence 66777777887788888999966 4766664
No 45
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=47.05 E-value=1.7e+02 Score=32.01 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHHHhCCCCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccccccccHHHHHHHHhhcc
Q 000402 1349 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDV 1428 (1565)
Q Consensus 1349 ~y~~~~~v~i~Svl~nt~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfLd~ 1428 (1565)
+-...+..++.|++..+..++.++|++++-++...+.+..+..+++..+.++.-. .......+....+
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~---------~~~G~~~~~n~g~--- 75 (214)
T cd04196 8 NGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNG---------KNLGVARNFESLL--- 75 (214)
T ss_pred CcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCC---------CCccHHHHHHHHH---
Confidence 4457788999999988766789999998888887888888876655333333221 1111121111111
Q ss_pred cCCCCCCeEEEEeCceeeccC-chHHHhc
Q 000402 1429 IFPLSLEKVIFVDADQVVRAD-MGELYDM 1456 (1565)
Q Consensus 1429 LfP~~vdkVIYLD~D~Iv~~D-l~EL~~~ 1456 (1565)
.. ..-+-|+++|+|.+..-| +..+++.
T Consensus 76 ~~-~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 76 QA-ADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred Hh-CCCCEEEEECCCcccChhHHHHHHHH
Confidence 11 257899999999776654 7888876
No 46
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=46.82 E-value=1.5e+02 Score=30.36 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=57.0
Q ss_pred cchHHHHHHHHHHHHHhCCCCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccccccccH-HHHHHHHhh
Q 000402 1348 HLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRI-IWAYKILFL 1426 (1565)
Q Consensus 1348 ~~y~~~~~v~i~Svl~nt~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~-~~~y~rLfL 1426 (1565)
.+-...+..++.|++..+..++.++|+.++-++...+.+......+...+.++.- +. .....+- .++...
T Consensus 6 ~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~--~~----~~g~~~~~n~~~~~--- 76 (180)
T cd06423 6 YNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRD--KE----NGGKAGALNAGLRH--- 76 (180)
T ss_pred cChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEe--cc----cCCchHHHHHHHHh---
Confidence 3445788899999998876678999999988877777766655433222222211 11 1111111 122221
Q ss_pred cccCCCCCCeEEEEeCceeeccC-chHH
Q 000402 1427 DVIFPLSLEKVIFVDADQVVRAD-MGEL 1453 (1565)
Q Consensus 1427 d~LfP~~vdkVIYLD~D~Iv~~D-l~EL 1453 (1565)
. .-+-|+++|+|.++..+ +.++
T Consensus 77 --~---~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 77 --A---KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred --c---CCCEEEEECCCCCcChHHHHHH
Confidence 1 47889999999988765 5556
No 47
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=44.51 E-value=3.4e+02 Score=30.57 Aligned_cols=45 Identities=9% Similarity=-0.059 Sum_probs=35.7
Q ss_pred ChhhhhhhhccchhhHHHHHHHHHHHHhCCCCCCccEEEcceeccC
Q 000402 665 PQDMLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSES 710 (1565)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~f~~Rlgi~~~~p~vlvNG~~~~~ 710 (1565)
..+.++..+.+..+...+....+-.+++||++ .|.++|||+.+-.
T Consensus 136 d~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~g-tPtfiInGky~v~ 180 (207)
T PRK10954 136 KGEDYDAAWNSFVVKSLVAQQEKAAADLQLRG-VPAMFVNGKYMVN 180 (207)
T ss_pred CHHHHHHHHhChHHHHHHHHHHHHHHHcCCCC-CCEEEECCEEEEc
Confidence 34567777777788888888888889999955 6999999998643
No 48
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=41.07 E-value=2.5e+02 Score=30.88 Aligned_cols=149 Identities=15% Similarity=0.095 Sum_probs=63.7
Q ss_pred EEEcCCCcccHHHHHHHHHH---HhcccceEEEEEeeecccccchhccCCCCCCCCccCCCC-CCcchhHHHHHHHHHHH
Q 000402 538 YVLDPATVCGLEVIDMIMSL---YENHFPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSP-VNEDISSLIIRLFLFIK 613 (1565)
Q Consensus 538 fviDps~~~~~~~l~~l~~~---~~~g~PiR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~s~~iar~f~~l~ 613 (1565)
+++||-....+.+=..+..+ +.+. ++|=+||...- +....-....+. ..+.+ .....+.-.+...|...
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~--i~~~~i~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~y~a~la~kAA 74 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK--IEFRFIPGGLM--PDINDFMPRMPI---NGDFWRNEPRSSSYPACLAYKAA 74 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT--EEEEEEE--SS---S--SB--H-------TTHHHS--BS--HHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc--EEEEEEEccch--HHHHHHHHhcCC---CHHHhcCCCCCCchHHHHHHHHH
Confidence 57899988877755555554 2333 44445665432 111110000000 00000 01112233444455555
Q ss_pred HhhChHHHHHHHHHHHhhhcccCCCCCCchhhh-hhhHhHHHhhccCCCCCCChhhhhhhhccchhhHHHHHHHHHHHHh
Q 000402 614 ESHGTQTAFQFLSNVNRLRMESADSADDDALEI-HHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFKL 692 (1565)
Q Consensus 614 ~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~-~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Rl 692 (1565)
+-.|.+.+..||.++-+...... ...+. +.+.+.. +++ ....+.|.+-..++...+....=++..+.+
T Consensus 75 ~~qg~k~~~~fL~~lQ~a~~~~~-----~~~s~~~~l~~iA-~~~-----gLD~~~F~~d~~S~~~~~~~~~D~~la~~m 143 (176)
T PF13743_consen 75 QLQGKKKARRFLRALQEALFLEG-----KNYSDEELLLEIA-EEL-----GLDVEMFKEDLHSDEAKQAFQEDQQLAREM 143 (176)
T ss_dssp HTTT-H--HHHHHHHHHHHHTS--------TTSHHHHHHHH-HHT-----T--HHHHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred HHhChhhHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHH-HHh-----CCCHHHHHHHHhChHHHHHHHHHHHHHHHc
Confidence 66799999999999875442211 11222 2222222 222 122334544455555555666667888899
Q ss_pred CCCCCCccEEEc
Q 000402 693 GLTKLKCCLLMN 704 (1565)
Q Consensus 693 gi~~~~p~vlvN 704 (1565)
||.+.+..|++|
T Consensus 144 ~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 144 GITGFPTLVIFN 155 (176)
T ss_dssp T-SSSSEEEEE-
T ss_pred CCCCCCEEEEEe
Confidence 996654555667
No 49
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=36.76 E-value=2.1e+02 Score=31.22 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcccCCCCCCchhhhhhhHhHHHhhccCCCCCCChhhhhhhhccchhhHH
Q 000402 602 SSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQ 681 (1565)
Q Consensus 602 s~~iar~f~~l~~~~g~~~a~~FL~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1565)
+...++++.+..+. | .....|+..++...-... .+.-+.+.+.+.. +.. ....+.+...+.++.+...
T Consensus 85 s~~a~~~~~~a~~~-~-~~~~~~~~~lf~a~~~~~----~~i~~~~~l~~~a-~~~-----Gld~~~~~~~~~~~~~~~~ 152 (192)
T cd03022 85 TLRAMRAALAAQAE-G-DAAEAFARAVFRALWGEG----LDIADPAVLAAVA-AAA-----GLDADELLAAADDPAVKAA 152 (192)
T ss_pred hHHHHHHHHHHHhC-c-hhHHHHHHHHHHHHhCCC----CCCCCHHHHHHHH-HHc-----CCCHHHHHHHcCCHHHHHH
Confidence 34556777776553 4 344566666654321100 1111222222222 221 1233456666777788888
Q ss_pred HHHHHHHHHHhCCCCCCccEEEcceeccCc
Q 000402 682 SQESSMFVFKLGLTKLKCCLLMNGLVSESS 711 (1565)
Q Consensus 682 ~~~~~~f~~Rlgi~~~~p~vlvNG~~~~~~ 711 (1565)
++...+-..++|+.+ .|.++|||..+-..
T Consensus 153 l~~~~~~a~~~gi~g-vPtfvv~g~~~~G~ 181 (192)
T cd03022 153 LRANTEEAIARGVFG-VPTFVVDGEMFWGQ 181 (192)
T ss_pred HHHHHHHHHHcCCCc-CCeEEECCeeeccc
Confidence 888888888999965 69999999877533
No 50
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.36 E-value=3e+02 Score=28.37 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccccccccHHHHHHHHhhcccC
Q 000402 1351 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1430 (1565)
Q Consensus 1351 ~~~~~v~i~Svl~nt~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfLd~Lf 1430 (1565)
...+.-++.|+...+..+..+.|+.++-.+...+.+..... .+.++... . ..+...+... -+...
T Consensus 9 ~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~--~-------~~g~~~a~n~-~~~~~- 73 (166)
T cd04186 9 LEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNG--E-------NLGFGAGNNQ-GIREA- 73 (166)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecC--C-------CcChHHHhhH-HHhhC-
Confidence 67788899999988766788999998877777666655432 33333321 1 1111111111 11111
Q ss_pred CCCCCeEEEEeCceeeccC-chHHHh
Q 000402 1431 PLSLEKVIFVDADQVVRAD-MGELYD 1455 (1565)
Q Consensus 1431 P~~vdkVIYLD~D~Iv~~D-l~EL~~ 1455 (1565)
+.+-|+|+|+|.++..+ +..+++
T Consensus 74 --~~~~i~~~D~D~~~~~~~l~~~~~ 97 (166)
T cd04186 74 --KGDYVLLLNPDTVVEPGALLELLD 97 (166)
T ss_pred --CCCEEEEECCCcEECccHHHHHHH
Confidence 57899999999988765 555555
No 51
>PRK11204 N-glycosyltransferase; Provisional
Probab=34.11 E-value=2.7e+02 Score=34.65 Aligned_cols=101 Identities=12% Similarity=0.106 Sum_probs=65.3
Q ss_pred CeeeEEEeecCcchHHHHHHHHHHHHHhCCCCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCccccccccccc
Q 000402 1337 KTINIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR 1416 (1565)
Q Consensus 1337 ~~InIf~va~d~~y~~~~~v~i~Svl~nt~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r 1416 (1565)
..+-|+..+ ++-+..+..++.|+++.+-.++.+.+++++-+++..+.+..+..++. .++++... + ...+..
T Consensus 54 p~vsViIp~--yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~-~v~~i~~~-~-----n~Gka~ 124 (420)
T PRK11204 54 PGVSILVPC--YNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIP-RLRVIHLA-E-----NQGKAN 124 (420)
T ss_pred CCEEEEEec--CCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-cEEEEEcC-C-----CCCHHH
Confidence 447776544 44467788899999976655789999999988888888888776543 34444432 1 111111
Q ss_pred HH-HHHHHHhhcccCCCCCCeEEEEeCceeeccC-chHHH
Q 000402 1417 II-WAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELY 1454 (1565)
Q Consensus 1417 ~~-~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~D-l~EL~ 1454 (1565)
-. .+... ...|-++++|+|.++..| +.++.
T Consensus 125 aln~g~~~--------a~~d~i~~lDaD~~~~~d~L~~l~ 156 (420)
T PRK11204 125 ALNTGAAA--------ARSEYLVCIDGDALLDPDAAAYMV 156 (420)
T ss_pred HHHHHHHH--------cCCCEEEEECCCCCCChhHHHHHH
Confidence 11 22221 257999999999988766 45555
No 52
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=32.78 E-value=1.8e+02 Score=31.83 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHHHHhCCCCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCccccccccc-ccHHHHHHHHhhc
Q 000402 1349 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEK-QRIIWAYKILFLD 1427 (1565)
Q Consensus 1349 ~y~~~~~v~i~Svl~nt~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~-~r~~~~y~rLfLd 1427 (1565)
+-+..+.-++.|+.+.+..+..+.|++++-++...+.+..+...++ +.++... . .... ..+..+....
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~--~----n~g~~~~~n~~~~~a--- 75 (202)
T cd04185 7 NRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLP--E----NLGGAGGFYEGVRRA--- 75 (202)
T ss_pred CCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECc--c----ccchhhHHHHHHHHH---
Confidence 4457788899999987766678888888877777777766654433 3333221 1 0011 1111222211
Q ss_pred ccCCCCCCeEEEEeCceeeccCc-hHHHh
Q 000402 1428 VIFPLSLEKVIFVDADQVVRADM-GELYD 1455 (1565)
Q Consensus 1428 ~LfP~~vdkVIYLD~D~Iv~~Dl-~EL~~ 1455 (1565)
+ ....+-++++|+|.++..+. .+|.+
T Consensus 76 -~-~~~~d~v~~ld~D~~~~~~~l~~l~~ 102 (202)
T cd04185 76 -Y-ELGYDWIWLMDDDAIPDPDALEKLLA 102 (202)
T ss_pred -h-ccCCCEEEEeCCCCCcChHHHHHHHH
Confidence 1 23689999999999887653 33443
No 53
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=29.25 E-value=3.9e+02 Score=29.25 Aligned_cols=97 Identities=13% Similarity=0.135 Sum_probs=59.6
Q ss_pred cchHHHHHHHHHHHHHhCCCCeEEEEEECCCChhHHHHHHHHHHHcC-CEEEEEEccCCccccccccccc-HHHHHHHHh
Q 000402 1348 HLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYG-FEYELITYKWPTWLHKQKEKQR-IIWAYKILF 1425 (1565)
Q Consensus 1348 ~~y~~~~~v~i~Svl~nt~~~v~F~il~~~lS~~~k~~l~~l~~~~~-~~i~~v~~~wp~~l~~~~~~~r-~~~~y~rLf 1425 (1565)
.+.+..+..++.|+++.+-.++.+.++.++-++...+.+..+.+.+. ..+.++.-. .. . ....+.+ +..++..
T Consensus 10 ~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~-~-g~~~~~~~~n~g~~~-- 84 (196)
T cd02520 10 CGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGG-EK-V-GINPKVNNLIKGYEE-- 84 (196)
T ss_pred CCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecC-Cc-C-CCCHhHHHHHHHHHh--
Confidence 44566788899999987655689999998888888888888877653 445544332 11 0 0000101 1112211
Q ss_pred hcccCCCCCCeEEEEeCceeeccC-chHHHh
Q 000402 1426 LDVIFPLSLEKVIFVDADQVVRAD-MGELYD 1455 (1565)
Q Consensus 1426 Ld~LfP~~vdkVIYLD~D~Iv~~D-l~EL~~ 1455 (1565)
...+=++++|+|.++..| +.++..
T Consensus 85 ------a~~d~i~~~D~D~~~~~~~l~~l~~ 109 (196)
T cd02520 85 ------ARYDILVISDSDISVPPDYLRRMVA 109 (196)
T ss_pred ------CCCCEEEEECCCceEChhHHHHHHH
Confidence 247899999999987543 344443
No 54
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=28.78 E-value=1e+02 Score=32.77 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=36.3
Q ss_pred EEEEEeccCCC-CCCCCeEEEEecCCCC--cccceEEEecceeeee-----eeCCceeEEEe
Q 000402 1181 VLTGHCSEKDH-EPPQGLQLILGTKSTP--HLVDTLVMANLGYWQM-----KVSPGVWYLQL 1234 (1565)
Q Consensus 1181 liEGha~d~~~-~pprGlqL~L~~~~~~--~~~DTiVManlGYFQl-----ka~PG~w~l~l 1234 (1565)
.|.||..|..+ .|..|+++.|....+. ....+.+-.+-|-|.+ ...||.|.|..
T Consensus 28 ~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F 89 (137)
T PRK15036 28 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVF 89 (137)
T ss_pred CeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEE
Confidence 49999999987 9999999999754321 1112233333488875 24577777775
No 55
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=28.26 E-value=5.6e+02 Score=28.89 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=61.6
Q ss_pred CeeeEEEeecCcchHHHHHHHHHHHHHhCCCC--eEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCccccccccc
Q 000402 1337 KTINIFSIASGHLYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEK 1414 (1565)
Q Consensus 1337 ~~InIf~va~d~~y~~~~~v~i~Svl~nt~~~--v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~ 1414 (1565)
..+=|+.. -++-+..+..++.|++..+..+ +.+.++.++-++...+.+..+... .+.++... . ...+
T Consensus 29 ~~isVvip--~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~--~----~~g~ 97 (251)
T cd06439 29 PTVTIIIP--AYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFP--E----RRGK 97 (251)
T ss_pred CEEEEEEe--cCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcC--C----CCCh
Confidence 33555543 3455788889999999766433 788888888888778777776643 34444322 1 1111
Q ss_pred cc-HHHHHHHHhhcccCCCCCCeEEEEeCceeeccC-chHHHhc
Q 000402 1415 QR-IIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDM 1456 (1565)
Q Consensus 1415 ~r-~~~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~D-l~EL~~~ 1456 (1565)
.+ ...++.. . .-|-|+++|+|.+...| +.+|++.
T Consensus 98 ~~a~n~gi~~-----a---~~d~i~~lD~D~~~~~~~l~~l~~~ 133 (251)
T cd06439 98 AAALNRALAL-----A---TGEIVVFTDANALLDPDALRLLVRH 133 (251)
T ss_pred HHHHHHHHHH-----c---CCCEEEEEccccCcCHHHHHHHHHH
Confidence 11 1122222 1 24889999999988754 6667744
No 56
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=26.63 E-value=5.9e+02 Score=27.15 Aligned_cols=147 Identities=14% Similarity=0.035 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhC---CCCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccccccccHHHHHHHHhhc
Q 000402 1351 ERFLKIMILSVLKNT---CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLD 1427 (1565)
Q Consensus 1351 ~~~~~v~i~Svl~nt---~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfLd 1427 (1565)
+..+..++.|+.... ..++.+.++.++-++...+.+..+..++. .+.++... . . .+...+....+ .
T Consensus 9 ~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~i~~i~~~-~-----n---~G~~~a~n~g~-~ 77 (181)
T cd04187 9 EENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDP-RVKVIRLS-R-----N---FGQQAALLAGL-D 77 (181)
T ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCC-CEEEEEec-C-----C---CCcHHHHHHHH-H
Confidence 344555555554333 35678888888888877777777665543 34444432 1 1 11111222221 1
Q ss_pred ccCCCCCCeEEEEeCceeecc-CchHHHhcCCCCCcEEEeeccCCCCCCCCcccccchhhh--ccc--CCCCceecchhh
Q 000402 1428 VIFPLSLEKVIFVDADQVVRA-DMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWK--DHL--RGRPYHISALYV 1502 (1565)
Q Consensus 1428 ~LfP~~vdkVIYLD~D~Iv~~-Dl~EL~~~dl~g~~~a~v~~~~~~~~m~g~~~w~~gyw~--~~L--~~~~YfnSGv~v 1502 (1565)
.. .-+-|+++|+|..... .+.++++. +....=++.+.+.........++....+.. ..+ ........+.++
T Consensus 78 ~a---~~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (181)
T cd04187 78 HA---RGDAVITMDADLQDPPELIPEMLAK-WEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRL 153 (181)
T ss_pred hc---CCCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEE
Confidence 11 2478999999987654 47778776 432221222222211110001111111111 011 133677788888
Q ss_pred eeHHHHHHhc
Q 000402 1503 VDLKRFRETA 1512 (1565)
Q Consensus 1503 inL~~~R~~~ 1512 (1565)
+.-+.|++..
T Consensus 154 ~~r~~~~~i~ 163 (181)
T cd04187 154 MDRKVVDALL 163 (181)
T ss_pred EcHHHHHHHH
Confidence 8888888754
No 57
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=25.36 E-value=6.3e+02 Score=27.25 Aligned_cols=83 Identities=17% Similarity=0.253 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEECCC-ChhHHHHHHHHHHHcCCEEEEEEccCCcccccccccccHHHHHHHHhhcccC
Q 000402 1352 RFLKIMILSVLKNTCRPVKFWFIKNYL-SPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 1430 (1565)
Q Consensus 1352 ~~~~v~i~Svl~nt~~~v~F~il~~~l-S~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfLd~Lf 1430 (1565)
.++..++.|++..+-.+..+.|+.++- ++...+.+..+.++++ +.++... . ..+...+.-.-+- .
T Consensus 13 ~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~--~-------n~G~~~a~N~g~~---~ 78 (201)
T cd04195 13 EFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLE--K-------NRGLGKALNEGLK---H 78 (201)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcC--c-------cccHHHHHHHHHH---h
Confidence 588899999998875567777777776 4555666777766655 5555432 1 1122222211111 1
Q ss_pred CCCCCeEEEEeCceeeccC
Q 000402 1431 PLSLEKVIFVDADQVVRAD 1449 (1565)
Q Consensus 1431 P~~vdkVIYLD~D~Iv~~D 1449 (1565)
..-+=|+++|+|.+..-+
T Consensus 79 -a~gd~i~~lD~Dd~~~~~ 96 (201)
T cd04195 79 -CTYDWVARMDTDDISLPD 96 (201)
T ss_pred -cCCCEEEEeCCccccCcH
Confidence 257889999999886643
No 58
>PRK06437 hypothetical protein; Provisional
Probab=24.42 E-value=64 Score=29.90 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.4
Q ss_pred HHHhCCCCCCcEEEEcCEEec
Q 000402 938 HRQLGVESGANAVITNGRVTF 958 (1565)
Q Consensus 938 ~~~~~l~~g~~~vv~NGR~i~ 958 (1565)
.+.+|+++...++.+||++++
T Consensus 27 L~~Lgi~~~~vaV~vNg~iv~ 47 (67)
T PRK06437 27 IKDLGLDEEEYVVIVNGSPVL 47 (67)
T ss_pred HHHcCCCCccEEEEECCEECC
Confidence 345799999999999999998
No 59
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=24.28 E-value=91 Score=29.21 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=33.3
Q ss_pred EEEEeecCchhHHHHHHHHHHH--HHcCCeeEEEeecCCCC
Q 000402 231 AILYGALGSDCFKEFHINLVQA--AKEGKVMYVVRPVLPSG 269 (1565)
Q Consensus 231 vILYg~i~s~~F~~fh~~L~~~--a~~gki~YV~R~~~~~~ 269 (1565)
+++|.|+..+--..+|+.|.+. ...+++++++||++..+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 41 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLG 41 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCC
Confidence 4788999999999999999877 56799999999998763
No 60
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=24.12 E-value=1.4e+02 Score=37.05 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=39.8
Q ss_pred eEEEEEEeccCCCCCCCCeEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 000402 1179 ALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 1234 (1565)
Q Consensus 1179 ~iliEGha~d~~~~pprGlqL~L~~~~~~~~~DTiVManlGYFQlka~PG~w~l~l 1234 (1565)
+.=|.|+..|.++.|..|..+++.... ...+++=..-|+|.+...||-|.|.+
T Consensus 294 ~~gI~G~V~D~~g~pi~~A~V~v~g~~---~~~~~~T~~~G~y~~~l~pG~Y~v~v 346 (376)
T cd03866 294 HLGVKGQVFDSNGNPIPNAIVEVKGRK---HICPYRTNVNGEYFLLLLPGKYMINV 346 (376)
T ss_pred cCceEEEEECCCCCccCCeEEEEEcCC---ceeEEEECCCceEEEecCCeeEEEEE
Confidence 455899999987799999999996432 11233334459999999999999886
No 61
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=24.05 E-value=4.3e+02 Score=30.56 Aligned_cols=38 Identities=5% Similarity=-0.060 Sum_probs=30.9
Q ss_pred cceEEEEcCCCcccHHHHHHHHHHHhcccceEEEEEee
Q 000402 534 FHAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILY 571 (1565)
Q Consensus 534 ~nlVfviDps~~~~~~~l~~l~~~~~~g~PiR~GlVp~ 571 (1565)
..++++.||..+--.++...+..+.+.|+-+|+=.+|+
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~ 146 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPR 146 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 45889999999999888888888888888777744554
No 62
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=22.81 E-value=7.3e+02 Score=27.66 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEECCCChhH-HHHHHHHHHHcCCEEEEEEccCCccccccccccc-HHHHHHHHhhcc
Q 000402 1351 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQF-KDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-IIWAYKILFLDV 1428 (1565)
Q Consensus 1351 ~~~~~v~i~Svl~nt~~~v~F~il~~~lS~~~-k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r-~~~~y~rLfLd~ 1428 (1565)
...+..++.|+.+.+-.++.++|+.++-++.. .+.+..+.++++..+.++... +. ...+.. +..+.. .
T Consensus 11 ~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~-~~----~G~~~~a~n~g~~-----~ 80 (236)
T cd06435 11 PEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVE-PL----PGAKAGALNYALE-----R 80 (236)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcC-CC----CCCchHHHHHHHH-----h
Confidence 35788899999866545688888887765543 456666666666566666543 10 011111 112222 1
Q ss_pred cCCCCCCeEEEEeCceeeccC-chHHH
Q 000402 1429 IFPLSLEKVIFVDADQVVRAD-MGELY 1454 (1565)
Q Consensus 1429 LfP~~vdkVIYLD~D~Iv~~D-l~EL~ 1454 (1565)
.- .+.|=|+++|+|.++..| |.++.
T Consensus 81 a~-~~~d~i~~lD~D~~~~~~~l~~l~ 106 (236)
T cd06435 81 TA-PDAEIIAVIDADYQVEPDWLKRLV 106 (236)
T ss_pred cC-CCCCEEEEEcCCCCcCHHHHHHHH
Confidence 22 246889999999877644 44444
No 63
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=22.39 E-value=1.1e+02 Score=34.22 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHHHHhCCCCeEEEEEECCCChhHHHHHHHHHHHcC-CEEEEEEccCCcccccccccccHH-HHHHHHhh
Q 000402 1349 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYG-FEYELITYKWPTWLHKQKEKQRII-WAYKILFL 1426 (1565)
Q Consensus 1349 ~y~~~~~v~i~Svl~nt~~~v~F~il~~~lS~~~k~~l~~l~~~~~-~~i~~v~~~wp~~l~~~~~~~r~~-~~y~rLfL 1426 (1565)
+-...+.-++.|+++.+-.+++++++.+.-+++..+.+..+...+. ..++++.-.-+ .. ...+.+-. .+...
T Consensus 11 ~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~--~g-~~~k~~a~n~~~~~--- 84 (228)
T PF13641_consen 11 NEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRN--PG-PGGKARALNEALAA--- 84 (228)
T ss_dssp S-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE------HH-HHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCC--CC-cchHHHHHHHHHHh---
Confidence 3345777899999964435699999998877777788888877664 34565544211 00 00111111 12221
Q ss_pred cccCCCCCCeEEEEeCceeeccC-chHHH
Q 000402 1427 DVIFPLSLEKVIFVDADQVVRAD-MGELY 1454 (1565)
Q Consensus 1427 d~LfP~~vdkVIYLD~D~Iv~~D-l~EL~ 1454 (1565)
...+-|+++|+|.++.-| +.++.
T Consensus 85 -----~~~d~i~~lD~D~~~~p~~l~~~~ 108 (228)
T PF13641_consen 85 -----ARGDYILFLDDDTVLDPDWLERLL 108 (228)
T ss_dssp --------SEEEEE-SSEEE-CHHHHHHH
T ss_pred -----cCCCEEEEECCCcEECHHHHHHHH
Confidence 137899999999988643 44444
No 64
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=21.88 E-value=9.6e+02 Score=28.57 Aligned_cols=130 Identities=17% Similarity=0.184 Sum_probs=61.9
Q ss_pred cCCeeeEEEeecCcchHHHHHHHHHHHHHhC--CCCeEEEEEECCCC--hhHHHHHHHHHHHc------CC---EEEEEE
Q 000402 1335 HGKTINIFSIASGHLYERFLKIMILSVLKNT--CRPVKFWFIKNYLS--PQFKDVIPHMAQEY------GF---EYELIT 1401 (1565)
Q Consensus 1335 ~~~~InIf~va~d~~y~~~~~v~i~Svl~nt--~~~v~F~il~~~lS--~~~k~~l~~l~~~~------~~---~i~~v~ 1401 (1565)
..+.|=|++..-| =++++.-....|..-+ +..|...+|.+..+ ....+.|....++. .. .+.++.
T Consensus 23 ~~e~VLILtplrn--a~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~ 100 (269)
T PF03452_consen 23 NKESVLILTPLRN--AASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILR 100 (269)
T ss_pred cCCeEEEEEecCC--chHHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEc
Confidence 3466777776433 2222322222222223 35699999998888 55555555433222 12 333332
Q ss_pred ccCCccccccc-------c--cccH-HHHHHH--HhhcccCCCCCCeEEEEeCceeeccCchHHHhcCCCCCcEEEeecc
Q 000402 1402 YKWPTWLHKQK-------E--KQRI-IWAYKI--LFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFC 1469 (1565)
Q Consensus 1402 ~~wp~~l~~~~-------~--~~r~-~~~y~r--LfLd~LfP~~vdkVIYLD~D~Iv~~Dl~EL~~~dl~g~~~a~v~~~ 1469 (1565)
=++.... .|. . +.|+ ..+=.| |..-.|=| ..+-|+++|+|++ ...-.=+=++=-.++.+- ||.|
T Consensus 101 ~df~~~~-~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p-~~swVlWlDaDIv-~~P~~lI~dli~~~kdIi-vPn~ 176 (269)
T PF03452_consen 101 KDFGQQL-SQDRSERHAFEVQRPRRRAMARARNFLLSSALGP-WHSWVLWLDADIV-ETPPTLIQDLIAHDKDII-VPNC 176 (269)
T ss_pred CCCcccc-cCchhhccchhhHHHHHHHHHHHHHHHHHhhcCC-cccEEEEEecCcc-cCChHHHHHHHhCCCCEE-ccce
Confidence 2221111 111 1 1222 123233 23344444 7999999999986 333222223322344444 6888
Q ss_pred C
Q 000402 1470 D 1470 (1565)
Q Consensus 1470 ~ 1470 (1565)
.
T Consensus 177 ~ 177 (269)
T PF03452_consen 177 W 177 (269)
T ss_pred e
Confidence 4
No 65
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=21.49 E-value=2.3e+02 Score=35.34 Aligned_cols=51 Identities=8% Similarity=0.065 Sum_probs=38.4
Q ss_pred eEEEEEEeccCCC-CCCCCeEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 000402 1179 ALVLTGHCSEKDH-EPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 1234 (1565)
Q Consensus 1179 ~iliEGha~d~~~-~pprGlqL~L~~~~~~~~~DTiVManlGYFQlka~PG~w~l~l 1234 (1565)
|.=|.|.-.|..+ .|..|..+.+..... .|++ .--|.|.+...||-|.|++
T Consensus 296 ~~gI~G~V~D~~~g~pl~~AtV~V~g~~~----~~~T-d~~G~f~~~l~pG~ytl~v 347 (375)
T cd03863 296 HRGVRGFVLDATDGRGILNATISVADINH----PVTT-YKDGDYWRLLVPGTYKVTA 347 (375)
T ss_pred cCeEEEEEEeCCCCCCCCCeEEEEecCcC----ceEE-CCCccEEEccCCeeEEEEE
Confidence 4567888889754 899999999964322 3333 2349999999999999986
No 66
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=21.45 E-value=1.7e+02 Score=34.28 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=33.0
Q ss_pred CCCCceEEEEeecCchhHHHHHHHHHHHHHcCCeeEEEee
Q 000402 225 SISSRTAILYGALGSDCFKEFHINLVQAAKEGKVMYVVRP 264 (1565)
Q Consensus 225 ~~~~p~vILYg~i~s~~F~~fh~~L~~~a~~gki~YV~R~ 264 (1565)
.+..++++.|.|+..+--+.||..+.+..+.|+++++|.+
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip 154 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHIL 154 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEe
Confidence 3455689999999999999999999988888988765443
No 67
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=21.20 E-value=4.4e+02 Score=28.98 Aligned_cols=97 Identities=10% Similarity=0.066 Sum_probs=55.3
Q ss_pred cchHHHHHHHHHHHHHhCCCC--eEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccccccccHHHHHHHHh
Q 000402 1348 HLYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILF 1425 (1565)
Q Consensus 1348 ~~y~~~~~v~i~Svl~nt~~~--v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLf 1425 (1565)
.+....+.-++.|++..+..+ +.++|+.++-++...+.+.......+..+..+... . ... .....+....+
T Consensus 6 ~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~--~--~~~---~g~~~a~n~g~ 78 (229)
T cd04192 6 RNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNS--R--VSI---SGKKNALTTAI 78 (229)
T ss_pred cCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeecc--C--ccc---chhHHHHHHHH
Confidence 345677888999999887655 88999998877666666651222223444444332 1 111 11111111111
Q ss_pred hcccCCCCCCeEEEEeCceeeccC-chHHHh
Q 000402 1426 LDVIFPLSLEKVIFVDADQVVRAD-MGELYD 1455 (1565)
Q Consensus 1426 Ld~LfP~~vdkVIYLD~D~Iv~~D-l~EL~~ 1455 (1565)
.. ..-+-|+++|+|.++..| +.++..
T Consensus 79 -~~---~~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 79 -KA---AKGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred -HH---hcCCEEEEECCCcccCHHHHHHHHH
Confidence 11 247899999999987754 344444
No 68
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=21.04 E-value=7.9e+02 Score=25.93 Aligned_cols=96 Identities=14% Similarity=0.192 Sum_probs=57.6
Q ss_pred chHHHHHHHHHHHHHhCCCCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCcccccccccccHHHHHHHHhhcc
Q 000402 1349 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDV 1428 (1565)
Q Consensus 1349 ~y~~~~~v~i~Svl~nt~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r~~~~y~rLfLd~ 1428 (1565)
+-...+.-++.|+.+.+..++.+.++.++-++...+.+..+.......+..+.-. +. ..+...+..+.+ .
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~n~g~--~ 76 (182)
T cd06420 7 NRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQE-DE-------GFRKAKIRNKAI--A 76 (182)
T ss_pred CChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcC-Cc-------chhHHHHHHHHH--H
Confidence 3456788899999988866789999998888777777777765433333222111 11 001111111111 1
Q ss_pred cCCCCCCeEEEEeCceeeccC-chHHHhc
Q 000402 1429 IFPLSLEKVIFVDADQVVRAD-MGELYDM 1456 (1565)
Q Consensus 1429 LfP~~vdkVIYLD~D~Iv~~D-l~EL~~~ 1456 (1565)
. ..-+-|++||+|.+...| +..+.+.
T Consensus 77 -~-a~g~~i~~lD~D~~~~~~~l~~~~~~ 103 (182)
T cd06420 77 -A-AKGDYLIFIDGDCIPHPDFIADHIEL 103 (182)
T ss_pred -H-hcCCEEEEEcCCcccCHHHHHHHHHH
Confidence 1 146899999999988765 5555544
No 69
>PF03666 NPR3: Nitrogen Permease regulator of amino acid transport activity 3; InterPro: IPR005365 This protein, also known in yeasts as Rmd11, complexes with NPR2, PF06218 from PFAM. This complex heterodimer is responsible for inactivating TORC1. an evolutionarily conserved protein complex that controls cell size via nutritional input signals, specifically, in response to amino acid starvation [].
Probab=20.43 E-value=4e+02 Score=34.11 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=21.7
Q ss_pred hhhhhhccchhhHHHHHHHHHHHHhCCCCCCccEEEcc
Q 000402 668 MLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNG 705 (1565)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~f~~Rlgi~~~~p~vlvNG 705 (1565)
....++..+.....+++.-+=+++.+| ..+.+|+
T Consensus 187 l~~~il~~SsLAr~L~~iy~~Is~s~i----A~l~in~ 220 (452)
T PF03666_consen 187 LYEEILKKSSLARALKDIYDAISTSGI----AHLTINN 220 (452)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCe----EEEEECC
Confidence 345555555665566665555666666 6788998
No 70
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=20.34 E-value=3.4e+02 Score=30.57 Aligned_cols=52 Identities=15% Similarity=0.276 Sum_probs=32.0
Q ss_pred HHHhhcCCChHhHhhhcCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEEec
Q 000402 902 EFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVTF 958 (1565)
Q Consensus 902 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv~NGR~i~ 958 (1565)
+.+...|++.+.+...+.+-..... .... .-..+.+|+. |.+++++|||++-
T Consensus 128 ~~a~~~Gld~~~f~~~l~s~~~~~~---v~~~-~~~a~~~gI~-gtPtfiInGky~v 179 (207)
T PRK10954 128 DVFIKAGVKGEDYDAAWNSFVVKSL---VAQQ-EKAAADLQLR-GVPAMFVNGKYMV 179 (207)
T ss_pred HHHHHcCCCHHHHHHHHhChHHHHH---HHHH-HHHHHHcCCC-CCCEEEECCEEEE
Confidence 3445678888888777654322211 1121 2234556875 8899999999974
No 71
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=20.12 E-value=8.1e+02 Score=27.15 Aligned_cols=95 Identities=13% Similarity=0.225 Sum_probs=57.0
Q ss_pred eeEEEeecCcchH-HHHHHHHHHHHHhCCCCeEEEEEECCCChhHHHHHHHHHHHcCCEEEEEEccCCccccccccccc-
Q 000402 1339 INIFSIASGHLYE-RFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR- 1416 (1565)
Q Consensus 1339 InIf~va~d~~y~-~~~~v~i~Svl~nt~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~r- 1416 (1565)
|-|+..+. +-. ..+..++.|+.+.+ +..+.|+.++-++...+.+..... ...+..+.-. ...+..
T Consensus 2 isVvIp~~--ne~~~~l~~~l~sl~~q~--~~eiivvdd~s~d~~~~~l~~~~~--~~~~~v~~~~-------~~g~~~a 68 (235)
T cd06434 2 VTVIIPVY--DEDPDVFRECLRSILRQK--PLEIIVVTDGDDEPYLSILSQTVK--YGGIFVITVP-------HPGKRRA 68 (235)
T ss_pred eEEEEeec--CCChHHHHHHHHHHHhCC--CCEEEEEeCCCChHHHHHHHhhcc--CCcEEEEecC-------CCChHHH
Confidence 34544433 444 77888999999877 789999998888776666633321 1222222211 111111
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEeCceeeccC-chHHH
Q 000402 1417 IIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELY 1454 (1565)
Q Consensus 1417 ~~~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~D-l~EL~ 1454 (1565)
+..+... ..-+-|+++|+|.++..| +.+++
T Consensus 69 ~n~g~~~--------a~~d~v~~lD~D~~~~~~~l~~l~ 99 (235)
T cd06434 69 LAEGIRH--------VTTDIVVLLDSDTVWPPNALPEML 99 (235)
T ss_pred HHHHHHH--------hCCCEEEEECCCceeChhHHHHHH
Confidence 1122221 157999999999999977 66666
No 72
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=20.08 E-value=5.4e+02 Score=34.76 Aligned_cols=122 Identities=12% Similarity=0.070 Sum_probs=70.2
Q ss_pred CCeeeEEEeecCcchH---HHHHHHHHHHHHhC-CCCeEEEEEECCCChhHH----HHHHHHHHHcCC--EEEEEEccCC
Q 000402 1336 GKTINIFSIASGHLYE---RFLKIMILSVLKNT-CRPVKFWFIKNYLSPQFK----DVIPHMAQEYGF--EYELITYKWP 1405 (1565)
Q Consensus 1336 ~~~InIf~va~d~~y~---~~~~v~i~Svl~nt-~~~v~F~il~~~lS~~~k----~~l~~l~~~~~~--~i~~v~~~wp 1405 (1565)
...+-|+.-++|+.-+ ..+..++.|+.... ..++.|+++.++-+++.. +.+..++++++. .+.+..-.+.
T Consensus 123 ~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n 202 (691)
T PRK05454 123 EARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRN 202 (691)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcC
Confidence 3457777666664433 35777888998654 357999999988777643 235567777642 3333222111
Q ss_pred cccccccccccHHHHHHHHhhcccCCCCCCeEEEEeCceeeccC-chHHHhcCCCCCcEEEee
Q 000402 1406 TWLHKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDMDIKGRPLAYTP 1467 (1565)
Q Consensus 1406 ~~l~~~~~~~r~~~~y~rLfLd~LfP~~vdkVIYLD~D~Iv~~D-l~EL~~~dl~g~~~a~v~ 1467 (1565)
...|..-+..+.+.. -..++-|+.+|+|.+...| +.++...=..+--+|++.
T Consensus 203 -----~~~KaGNl~~~~~~~-----~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQ 255 (691)
T PRK05454 203 -----VGRKAGNIADFCRRW-----GGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQ 255 (691)
T ss_pred -----CCccHHHHHHHHHhc-----CCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEe
Confidence 011222222222221 1368999999999999988 566663211233466664
Done!