Query 000402
Match_columns 1565
No_of_seqs 248 out of 1172
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 18:45:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000402.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_178-182//hhsearch_pdb/000402hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 1.0 1 1 298.0 17.1 211 1337-1562 4-218 (276)
2 1g9r_A Glycosyl transferase; a 1.0 1 1 275.4 12.3 205 1339-1561 1-211 (311)
3 1ll2_A Glycogenin-1; protein-s 1.0 1 1 161.5 12.4 181 1338-1562 4-192 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 1.0 1 1 151.8 9.5 177 1342-1560 8-191 (263)
5 3gmf_A Protein-disulfide isome 1.0 1 1 32.1 7.1 47 218-266 7-59 (205)
6 1o7q_A N-acetyllactosaminide a 1.0 1 1 31.4 11.4 209 1335-1561 46-262 (289)
7 3ioh_A Histo-blood group ABO s 1.0 1 1 31.0 9.1 209 1335-1561 56-271 (298)
8 3gha_A Disulfide bond formatio 1.0 1 1 28.4 16.2 41 799-839 30-73 (202)
9 3bci_A Disulfide bond protein 1.0 1 1 28.1 15.7 35 674-709 127-161 (186)
10 3hd5_A Thiol:disulfide interch 1.0 1 1 26.4 13.9 39 799-838 26-65 (195)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=1.00 E-value=1 Score=298.02 Aligned_cols=211 Identities=18% Similarity=0.185 Sum_probs=184.1
Q ss_pred CEEEEEEEECCCCHHHHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 704699964183228999999999987099-9809999979999668878988787719889999826970012262220
Q 000402 1337 KTINIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQ 1415 (1565)
Q Consensus 1337 ~~InIf~vasd~~y~~~~~v~i~Sil~nt~-~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~~~ 1415 (1565)
..|||++ |+|++|+++++++|.||++|++ .+++|||+++++|+++++.|+.+.+.++++++++.++ +.+++......
T Consensus 4 m~i~I~~-~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~-~~~~~~~~~~~ 81 (276)
T 3tzt_A 4 MADALLL-TLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRAT-DDLFSFAKVTD 81 (276)
T ss_dssp -CEEEEE-ECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred EEEEEEE-EECHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEC-HHHHHCCCCCC
T ss_conf 0678999-957868999999999999849987648999828999999999999998759989999828-89971486446
Q ss_pred CH-HHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCC-CC
Q ss_conf 18-99999996200178999849999376654269267882389998179941147988777853101100100039-99
Q 000402 1416 RI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLR-GR 1493 (1565)
Q Consensus 1416 r~-~~~y~rLfLd~lfP~~vdkVIYLD~D~Iv~~Dl~eL~~~Dl~g~~~aav~~~~~~~~~~g~~fw~~gyw~~~L~-~~ 1493 (1565)
|+ .++|.||+++.+||.+++||||||+|++|++|+.|||++|++|+++|||++|... .|.+++++..++ ..
T Consensus 82 ~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~-------~~~~~~~~~~l~~~~ 154 (276)
T 3tzt_A 82 RYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKT-------DMANNVNRIRLGTDT 154 (276)
T ss_dssp --CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------------
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCHHHHHHCCCCCCEEEEEEECCCC-------HHHHHHHHHCCCCCC
T ss_conf 5489999999999970011684999918856417989996258899869999823441-------177888874379888
Q ss_pred CCEECCHHHEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCEEECCC-CCCCCCC
Q ss_conf 81101000120999998526899999999861899988589887842031259991248258-9999999
Q 000402 1494 PYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEPIPFFCARL-TSPLKPK 1562 (1565)
Q Consensus 1494 ~YfnSGv~linL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~~~I~~Lp~-~~~~~~~ 1562 (1565)
+||||||||+|+++||+.+++++++.++++ ++.++.++|| |++|.++.+ .|..||+ .||+.+.
T Consensus 155 ~yfNsGV~linl~~~R~~~~~~~~~~~~~~---~~~~~~~~DQ--d~LN~~f~~-~~~~Lp~~~wN~~~~ 218 (276)
T 3tzt_A 155 DYYNSGLLLINLKRAREEIDPDEIFSFVED---NHMNLLLPDQ--DILNAMYGD-RIYPLDDLIYNYDAR 218 (276)
T ss_dssp -CEEEEEEEEEHHHHHHHCCHHHHHHHHHH---C--------C--HHHHHHHGG-GEEEEEHHHHSEETT
T ss_pred CEEEEEEEEEEHHHHHHHHHHHHHHHHHHH---CCCCCCCCCH--HHHHHHHHC-CEEECCCHHEEEECC
T ss_conf 747720799879999864299999999996---6366657884--599999858-989988532145323
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=1.00 E-value=1 Score=275.45 Aligned_cols=205 Identities=19% Similarity=0.204 Sum_probs=176.3
Q ss_pred EEEEEEECCCCHHHHHHHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC-CCC
Q ss_conf 46999641832289999999999-8709998099999799996688789887877198899998269700122622-201
Q 000402 1339 INIFSIASGHLYERFLKIMILSV-LKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKE-KQR 1416 (1565)
Q Consensus 1339 InIf~vasd~~y~~~~~v~i~Si-l~nt~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l~~~~~-~~r 1416 (1565)
|||++ ++|++|++++.+||.|+ ++|++.+++||++++++|++.++.|..+...++.+++++.++ +.++..... ..+
T Consensus 1 m~I~~-~~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~ 78 (311)
T 1g9r_A 1 MDIVF-AADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVN-PEDFAGFPLNIRH 78 (311)
T ss_dssp CEEEE-EECGGGHHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECC-GGGGTTSCCCCTT
T ss_pred CEEEE-ECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECC-HHHHHCCCCCCCC
T ss_conf 94999-877868999999999899976998835999989999999999999998759989999848-8997138654242
Q ss_pred H-HHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCC---C
Q ss_conf 8-99999996200178999849999376654269267882389998179941147988777853101100100039---9
Q 000402 1417 I-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLR---G 1492 (1565)
Q Consensus 1417 ~-~~~y~rLfLd~lfP~~vdkVIYLD~D~Iv~~Dl~eL~~~Dl~g~~~aav~~~~~~~~~~g~~fw~~gyw~~~L~---~ 1492 (1565)
+ .++|.|||++.+|| +++||||||+|+||++||.|||++|++|+++|||++|.... ...|++.++ +
T Consensus 79 ~s~~~y~Rl~l~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~---------~~~~~~~~~~~~~ 148 (311)
T 1g9r_A 79 ISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVER---------QEGYKQKIGMADG 148 (311)
T ss_dssp CCGGGGGGGGHHHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHT---------STTHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHHH-HCCEEEEECCCEEECCCHHHHHCCCCCCCEEEEEECCCHHH---------HHHHHHHCCCCCC
T ss_conf 7899999999999854-14879998178676267799945287886799984542244---------1999985478889
Q ss_pred CCCEECCHHHEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
Q ss_conf 981101000120999998526899999999861899988589887842031259991248258999999
Q 000402 1493 RPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEPIPFFCARLTSPLKP 1561 (1565)
Q Consensus 1493 ~~YfnSGv~linL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~~~I~~Lp~~~~~~~ 1561 (1565)
.+||||||||+|+++||+.++.++++.++++ ++.++.++|| |++|.++.+ .|..||+.||+.+
T Consensus 149 ~~yfNsGv~linl~~~r~~~~~~~~~~~~~~---~~~~~~~~DQ--d~lN~~f~~-~~~~Lp~~wN~~~ 211 (311)
T 1g9r_A 149 EYYFNAGVLLINLKKWRRHDIFKMSSEWVEQ---YKDVMQYQDQ--DILNGLFKG-GVCYANSRFNFMP 211 (311)
T ss_dssp SCCEEEEEEEECHHHHTTSCHHHHHHHHHHH---HTTTCSSHHH--HHHHHHHTT-SEEEECGGGSBCH
T ss_pred CCEEEEEEEEEEHHHHHHCCHHHHHHHHHHH---CCCCCCCCCC--CHHHHHHCC-CEEECCHHHCCCC
T ss_conf 8468644434609999860269999999996---6576755872--799999809-7798280035574
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=1.00 E-value=1 Score=161.54 Aligned_cols=181 Identities=13% Similarity=0.090 Sum_probs=130.1
Q ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEE-EEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCC--C
Q ss_conf 04699964183228999999999987099980999-997999966887898878771988999982697001-2262--2
Q 000402 1338 TINIFSIASGHLYERFLKIMILSVLKNTCRPVKFW-FIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWL-HKQK--E 1413 (1565)
Q Consensus 1338 ~InIf~vasd~~y~~~~~v~i~Sil~nt~~~v~F~-il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~wp~~l-~~~~--~ 1413 (1565)
.++|.+ ++|++|...+.+++.|+.+|++. ..++ +++++++++.++.|..+ +..+..+.+- +... .... .
T Consensus 4 ~a~vt~-~~d~~Yl~~a~vl~~SL~~~~s~-~~l~vlv~~~is~~~~~~L~~~----~~~v~~v~~l-~~~~~~~~~~~~ 76 (333)
T 1ll2_A 4 QAFVTL-TTNDAYAKGALVLGSSLKQHRTS-RRLAVLTTPQVSDTMRKALEIV----FDEVITVDIL-DSGDSAHLTLMK 76 (333)
T ss_dssp EEEEEE-ESSHHHHHHHHHHHHHHHHTTCC-SEEEEEECTTSCHHHHHHHHHH----CSEEEECCTT-STTSTTHHHHHH
T ss_pred EEEEEE-EECHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCCHHHHHHHHHH----CCEEEEEEEC-CCCCHHHCCCCC
T ss_conf 499999-84887999999999999985899-9889998499999999899985----9989998636-873221102024
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 20189999999620017899984999937665426926788238999817994114798877785310110010003999
Q 000402 1414 KQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGR 1493 (1565)
Q Consensus 1414 ~~r~~~~y~rLfLd~lfP~~vdkVIYLD~D~Iv~~Dl~eL~~~Dl~g~~~aav~~~~~~~~~~g~~fw~~gyw~~~L~~~ 1493 (1565)
..+...+|.||+++.+ + +++||||||+|++|.+||.+||+++ .+||+|++ | | .
T Consensus 77 ~~~~~~t~~Kl~i~~l-~-~ydrvlYLDaD~lv~~di~eLf~~~----~~aAv~d~-------~--------~------~ 129 (333)
T 1ll2_A 77 RPELGVTLTKLHCWSL-T-QYSKCVFMDADTLVLANIDDLFERE----ELSAAPDP-------G--------W------P 129 (333)
T ss_dssp CGGGHHHHHHGGGGGC-T-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECS-------S--------S------T
T ss_pred CCCHHHHHHHHHHHHH-C-CCCEEEEEECCEEECCCHHHHHCCC----CEEEEECC-------C--------C------C
T ss_conf 6416888899998675-2-7774999838987654999984887----61587457-------8--------8------7
Q ss_pred CCEECCHHHEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCC----CEEECCCCCCCCCC
Q ss_conf 8110100012099999852689999999986189998858988784203125999----12482589999999
Q 000402 1494 PYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEPI----PFFCARLTSPLKPK 1562 (1565)
Q Consensus 1494 ~YfnSGv~linL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~~----~I~~Lp~~~~~~~~ 1562 (1565)
.||||||||+|+.. ...++++....+ ..++.++|| |+||.++.+. .+..||+.||+.+.
T Consensus 130 ~~fNsGvmlin~~~----~~~~~l~~~~~~----~~~~~~~DQ--~~LN~~f~~~~~~~~~~~Lp~~yN~~~~ 192 (333)
T 1ll2_A 130 DCFNSGVFVYQPSV----ETYNQLLHVASE----QGSFDGGDQ--GLLNTFFNSWATTDIRKHLPFIYNLSSI 192 (333)
T ss_dssp TSEEEEEEEECCCH----HHHHHHHHHHHH----TCCTTSSHH--HHHHHHTTTTTTSCGGGBCCGGGSEETT
T ss_pred CCEEEEEEEEECCH----HHHHHHHHHHHH----CCCCCCCCH--HHHHHHHHHHCCCCCCCCCCCHHHCCCC
T ss_conf 65112599996887----899999999986----499778778--9999999750235756158737754665
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=1.00 E-value=1 Score=151.83 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=129.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEE-CCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCC-CCCCCCHH
Q ss_conf 9964183228999999999987099980999997-999966887898878771988999982-69700122-62220189
Q 000402 1342 FSIASGHLYERFLKIMILSVLKNTCRPVKFWFIK-NYLSPQFKDVIPHMAQEYGFEYELITY-KWPTWLHK-QKEKQRII 1418 (1565)
Q Consensus 1342 f~vasd~~y~~~~~v~i~Sil~nt~~~v~F~il~-~~lS~~~k~~l~~l~~~~~~~i~~v~~-~wp~~l~~-~~~~~r~~ 1418 (1565)
++.++|++|...+.+++.|+.+|++ ...+.++. +.++++.++.|..+ +..+..+.. +.+..... .....+..
T Consensus 8 vTl~td~~Yl~ga~vL~~SL~~~~s-~~~lvvLvt~~vs~~~~~~L~~~----~~~vi~V~~l~~~~~~~~~~~~rp~~~ 82 (263)
T 3u2u_A 8 VTLTTNDAYAKGALVLGSSLKQHRT-TRRLVVLATPQVSDSMRKVLETV----FDEVIMVDVLDSGDSAHLTLMKRPELG 82 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTC-CSEEEEEECTTSCHHHHHHHHHH----SSEEEECCCCCCCCHHHHHHTTCTTGG
T ss_pred EEEEECHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHC----CCEEEEEEECCCCCHHHHHHHCCCCHH
T ss_conf 9999788899999999999998699-98789996278999999999973----995899653587345556530375166
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCEEC
Q ss_conf 99999962001789998499993766542692678823899981799411479887778531011001000399981101
Q 000402 1419 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHIS 1498 (1565)
Q Consensus 1419 ~~y~rLfLd~lfP~~vdkVIYLD~D~Iv~~Dl~eL~~~Dl~g~~~aav~~~~~~~~~~g~~fw~~gyw~~~L~~~~YfnS 1498 (1565)
.+|.+|++..+. +++||||||+|++|.+|+.|||+++ .+||+|+. | | ..||||
T Consensus 83 ~~~~kl~~~~l~--~~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~-------~--------~------~~~fNs 135 (263)
T 3u2u_A 83 VTLTKLHCWSLT--QYSKCVFMDADTLVLANIDDLFDRE----ELSAAPDP-------G--------W------PDCFNS 135 (263)
T ss_dssp GGGGGGGGGGCT--TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECT-------T--------S------TTSEEE
T ss_pred HHHHHHHHCCCC--CCCEEEEECCCEEECCCHHHHHCCC----CCEEECCC-------C--------C------CCCCCC
T ss_conf 775998864024--7652899808985135979885787----51470357-------8--------8------765567
Q ss_pred CHHHEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCC----CCEEECCCCCCCC
Q ss_conf 0001209999985268999999998618999885898878420312599----9124825899999
Q 000402 1499 ALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQEP----IPFFCARLTSPLK 1560 (1565)
Q Consensus 1499 Gv~linL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~~----~~I~~Lp~~~~~~ 1560 (1565)
||||+|++ ....++++....+ ..++.++|| |+||.++.+ ..+..||..||+-
T Consensus 136 Gv~li~p~----~~~~~~l~~~~~~----~~~~~~~DQ--d~LN~~f~~w~~~~~~~~Lp~~yN~~ 191 (263)
T 3u2u_A 136 GVFVYQPS----VETYNQLLHLASE----QGSFDGGDQ--GILNTFFSSWATTDIRKHLPFIYNLS 191 (263)
T ss_dssp EEEEECCC----HHHHHHHHHHHHH----HCCTTSSHH--HHHHHHTTTTTTSCGGGBCCGGGSEE
T ss_pred EEEEECCC----HHHHHHHHHHHHH----CCCCCCCCH--HHHHHHHCCCCCCCEEEECCCCCCCC
T ss_conf 47997336----7899999999984----289886557--89999860434467267689310551
No 5
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=1.00 E-value=1 Score=32.12 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=21.5
Q ss_pred CEECCCCCCCCC-EEEEEEECCCHHHHHHHHHHHHHH-----HCCCEEEEEEECC
Q ss_conf 612157889984-599992059542899999999998-----8197369994217
Q 000402 218 DHIHAESSISSR-TAILYGALGSDCFKEFHINLVQAA-----KEGKVMYVVRPVL 266 (1565)
Q Consensus 218 Dhv~~~s~~~~p-~vILYg~i~s~~F~~fh~~L~~~A-----~~gki~YV~R~~~ 266 (1565)
++++| +.++| ++|.|.|...|-.+.||..+.+.- ..|+++|+||++|
T Consensus 7 ~~~~G--~~~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~p 59 (205)
T 3gmf_A 7 HHLLG--NPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFV 59 (205)
T ss_dssp EEEES--CTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEECC
T ss_pred CCEEC--CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 84125--999996999988999978999999988999998453782899998488
No 6
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=1.00 E-value=1 Score=31.39 Aligned_cols=209 Identities=15% Similarity=0.096 Sum_probs=114.6
Q ss_pred CCCEEEEEEEECCCCHH-HHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCC-CCCCCC
Q ss_conf 68704699964183228-99999999998709--998099999799996688789887877198899998269-700122
Q 000402 1335 HGKTINIFSIASGHLYE-RFLKIMILSVLKNT--CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKW-PTWLHK 1410 (1565)
Q Consensus 1335 ~~~~InIf~vasd~~y~-~~~~v~i~Sil~nt--~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~w-p~~l~~ 1410 (1565)
.+-+|-|.++|.| .|. .++.--+.|.=+|= ..++++||+++..+. +|.+.-.-+-++....+.- ..|
T Consensus 46 ~n~tIGl~vfa~G-kY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~~-----~p~v~l~~~r~~~V~~i~~~~~W--- 116 (289)
T 1o7q_A 46 QKITVGLTVFAVG-RYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSR-----MPLIELGPLRSFKVFKIKPEKRW--- 116 (289)
T ss_dssp HTCCEEEEEEECT-THHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGG-----CCCCCCCTTEEEEEEECCCCSSH---
T ss_pred HCCEEEEEEEEEC-CCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHH-----CCCCCCCCCCEEEEEEECCCCCC---
T ss_conf 0986999999963-00899999999999986358975799998578221-----77544689975799996000488---
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 62220189999999620017899984999937665426926788238999817994114798877785310110010003
Q 000402 1411 QKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL 1490 (1565)
Q Consensus 1411 ~~~~~r~~~~y~rLfLd~lfP~~vdkVIYLD~D~Iv~~Dl~eL~~~Dl~g~~~aav~~~~~~~~~~g~~fw~~gyw~~~L 1490 (1565)
|-..-++...........++ .++|-+.++|+|+++.+++..= .| |..+|..--....+.-..|.|-+..--..++
T Consensus 117 ~d~sm~Rm~~i~~~~~~~~~-~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~~~~~~fpYERrp~S~AyI 191 (289)
T 1o7q_A 117 QDISMMRMKTIGEHIVAHIQ-HEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKADPNDFTYERRKESAAYI 191 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTHH-HHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSCGGGSCCCCCTTSTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHH-HCCCEEEEEECCCEEECCCCHH---HH-HHHHHCCCHHHHCCCCCCCCCCCCCCCEEEE
T ss_conf 46588999999999998774-0288799962785752367887---88-7788803878767897779898896760011
Q ss_pred ---CCCCCEECCHHHEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCCCEEECCCCCCCCC
Q ss_conf ---999811010001209999985268999999998618999885898878420312-59991248258999999
Q 000402 1491 ---RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASS-QEPIPFFCARLTSPLKP 1561 (1565)
Q Consensus 1491 ---~~~~YfnSGv~linL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~-~~~~~I~~Lp~~~~~~~ 1561 (1565)
.|.+|+-+|++==-.+.+-+. .+.|...+..-.++.-.-.+.|. --||.. +.+-|..-|++++..++
T Consensus 192 p~~eGdfYY~Ga~fGGt~~~vl~l--~~~c~~~i~~D~~n~I~A~wHDE--SHLNKYf~~~KPtKvLSPEY~wd~ 262 (289)
T 1o7q_A 192 PFGEGDFYYHAAIFGGTPTQVLNI--TQECFKGILKDKKNDIEAQWHDE--SHLNKYFLLNKPTKILSPEYCWDY 262 (289)
T ss_dssp CTTCCSCCEEEEEEEECHHHHHHH--HHHHHHHHHHHHHTTCCCTTTHH--HHHHHHHHHSCCSEEECGGGSBCG
T ss_pred CCCCCCEEEECEEECCCHHHHHHH--HHHHHHHHHHHHHCCEEEEECCH--HHHHHHHHHCCCCEEECHHHCCCC
T ss_conf 589988788764608738999999--99999999999857907884236--566677764699878787777874
No 7
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=1.00 E-value=1 Score=31.02 Aligned_cols=209 Identities=12% Similarity=0.105 Sum_probs=109.7
Q ss_pred CCCEEEEEEEECCCCHHHHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCC
Q ss_conf 6870469996418322899999999998709--99809999979999668878988787719889999826-97001226
Q 000402 1335 HGKTINIFSIASGHLYERFLKIMILSVLKNT--CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYK-WPTWLHKQ 1411 (1565)
Q Consensus 1335 ~~~~InIf~vasd~~y~~~~~v~i~Sil~nt--~~~v~F~il~~~lS~~~k~~l~~l~~~~~~~i~~v~~~-wp~~l~~~ 1411 (1565)
.+.+|-+.+.|.| .|..++.--+.|.=+|= ..+++|||+++..+. +|.+.-.-+-.+..+.+. -..| |
T Consensus 56 ~n~tIGl~vfA~G-kY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~~~~-----vP~v~l~~~r~~~V~~v~~~~~W---q 126 (298)
T 3ioh_A 56 QNTTIGLTVFAIK-KYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAA-----VPRVTLGTGRQLSVLEVRAYKRW---Q 126 (298)
T ss_dssp TTCEEEEEEEECG-GGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGGG-----SCCCCCCTTEEEEEEECCCCSSH---H
T ss_pred HCCCEEEEEEEEC-CHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHH-----CCCCCCCCCCEEEEEEECCCCCC---C
T ss_conf 1982999999957-2899999998719975067965899997178442-----77655699975999996665678---6
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCC-
Q ss_conf 2220189999999620017899984999937665426926788238999817994114798877785310110010003-
Q 000402 1412 KEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL- 1490 (1565)
Q Consensus 1412 ~~~~r~~~~y~rLfLd~lfP~~vdkVIYLD~D~Iv~~Dl~eL~~~Dl~g~~~aav~~~~~~~~~~g~~fw~~gyw~~~L- 1490 (1565)
-..-++......+....++ .++|-+.++|+|+++.+++..= .| |..+|..--.........|.|-+..--+.++
T Consensus 127 d~sm~Rm~~i~~~~~~~~~-~EvDyLfc~dvd~~F~~~vG~E---~L-g~lva~lHp~~y~~~~~~FpYERrp~S~AyIp 201 (298)
T 3ioh_A 127 DVSMRRMEMISDFCERRFL-SEVDYLVCVDVDMEFRDHVGVE---IL-TPLFGTLHPGFYGSSREAFTYERRPQSQAYIP 201 (298)
T ss_dssp HHHHHHHHHHHHHHHHTHH-HHCSEEEEEESSEEECSCBCGG---GC-SSEEEEBCTTTTTSCGGGSCCCCCTTSTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHH-HCCCEEEEECCCCEECCCCCHH---HH-HHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 6649999999999998876-0088799954897530576477---86-75676428134368811086557814541406
Q ss_pred --CCCCCEECCHHHEEHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCC-CCCEEECCCCCCCCC
Q ss_conf --99981101000120999998526899999999861899988589887842031259-991248258999999
Q 000402 1491 --RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQLGFWPASSQE-PIPFFCARLTSPLKP 1561 (1565)
Q Consensus 1491 --~~~~YfnSGv~linL~~~R~~~~~dklr~~y~~ls~d~~sl~~~DQ~~DllN~~~~-~~~I~~Lp~~~~~~~ 1561 (1565)
.|.+|+-+|++==-.....+. .+.|...+..-.++.-.-.++|. --||..+. +-|...|+++|..++
T Consensus 202 ~~eGdfYY~ga~fGGt~~~vl~L--t~~C~~~i~~D~~n~IeA~WhDE--SHLNKYfl~hKPtKvLSPEY~Wd~ 271 (298)
T 3ioh_A 202 KDEGDFYYGGAFFGGSVQEVQRL--TRACHQAMMVDQANGIEAVWHDE--SHLNKYLLRHKPTKVLSPEYLWDQ 271 (298)
T ss_dssp TTCCSCCBCTTEEEEEHHHHHHH--HHHHHHHHHHHHHTTCCCTTTHH--HHHHHHHHHSCCSEEECGGGSBCH
T ss_pred CCCCCEEEEEEECCCCHHHHHHH--HHHHHHHHHHHHHCCCEEECCCH--HHHHHHHHHCCCCCEECHHHCCCC
T ss_conf 99998588644408759999999--99999999999867926725555--365666644689800598774893
No 8
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=1.00 E-value=1 Score=28.36 Aligned_cols=41 Identities=10% Similarity=0.000 Sum_probs=17.4
Q ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHCC---CCCEEEEEEECC
Q ss_conf 32799994178986899999999998549---996299999759
Q 000402 799 PVTHLLAVDVTSKKGMKLLHEGIRFLIGG---SNGARLGVLFSA 839 (1565)
Q Consensus 799 ~~t~~vv~D~~s~~g~~~l~~al~~l~~~---~~~~Ri~~i~n~ 839 (1565)
++|+....||.++-..++-......+++. ...+|+.+.|-|
T Consensus 30 ~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p 73 (202)
T 3gha_A 30 PVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVM 73 (202)
T ss_dssp SEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECC
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 98999987999860898998755999998243884999998467
No 9
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=1.00 E-value=1 Score=28.10 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCEECC
Q ss_conf 120035789989999999199988860788131305
Q 000402 674 KEKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSE 709 (1565)
Q Consensus 674 ~~~~~d~~~~~~~~fi~rlgi~~~~p~vlvNG~~~~ 709 (1565)
.+..+...+....+..+++|+.+ .|.+++||..++
T Consensus 127 ~~~~~~~~v~~~~~~a~~~gv~G-tPt~vvnG~~~~ 161 (186)
T 3bci_A 127 KDSKSWKAAEKDKKIAKDNHIKT-TPTAFINGEKVE 161 (186)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCS-SSEEEETTEECS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCC-CCEEEECCEECC
T ss_conf 37889999999999999769988-996989999857
No 10
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=1.00 E-value=1 Score=26.39 Aligned_cols=39 Identities=8% Similarity=-0.132 Sum_probs=16.0
Q ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHCCCC-CEEEEEEEC
Q ss_conf 3279999417898689999999999854999-629999975
Q 000402 799 PVTHLLAVDVTSKKGMKLLHEGIRFLIGGSN-GARLGVLFS 838 (1565)
Q Consensus 799 ~~t~~vv~D~~s~~g~~~l~~al~~l~~~~~-~~Ri~~i~n 838 (1565)
++++..+.|+.++...+... .++.+.+... ++++..++-
T Consensus 26 ~~~vv~f~d~~Cp~C~~~~~-~l~~l~~~~~~~v~~~~~~~ 65 (195)
T 3hd5_A 26 KIEVLEFFAYTCPHCAAIEP-MVEDWAKTAPQDVVLKQVPI 65 (195)
T ss_dssp CEEEEEEECTTCHHHHHHHH-HHHHHHHTCCTTEEEEEEEC
T ss_pred CEEEEEEECCCCCCHHHHHH-HHHHHHHHCCCCEEEEEEEC
T ss_conf 95999998899814777669-99999997799769999852
Done!