Query 000403
Match_columns 1563
No_of_seqs 60 out of 62
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 07:22:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1883 Cofactor required for 100.0 3E-269 6E-274 2353.2 39.8 1372 1-1559 1-1511(1517)
2 PF11573 Med23: Mediator compl 100.0 8E-218 2E-222 1997.0 64.4 987 383-1505 276-1341(1341)
3 KOG1883 Cofactor required for 100.0 2.2E-68 4.8E-73 637.3 32.7 946 388-1542 296-1378(1517)
4 PF07719 TPR_2: Tetratricopept 32.1 38 0.00082 25.9 2.2 18 381-398 16-33 (34)
5 PF04782 DUF632: Protein of un 30.4 27 0.00058 41.6 1.6 52 253-308 244-310 (312)
6 PF09759 Atx10homo_assoc: Spin 24.9 55 0.0012 33.5 2.5 41 88-131 17-61 (102)
7 PF00515 TPR_1: Tetratricopept 24.7 64 0.0014 25.1 2.3 18 381-398 16-33 (34)
8 smart00028 TPR Tetratricopepti 21.5 86 0.0019 21.4 2.3 18 381-398 16-33 (34)
9 PHA02992 hypothetical protein; 20.0 1.5E+02 0.0032 39.2 5.2 90 981-1078 178-282 (728)
10 PF06371 Drf_GBD: Diaphanous G 18.3 1.6E+02 0.0036 31.0 4.5 91 280-406 12-104 (187)
No 1
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=100.00 E-value=2.7e-269 Score=2353.20 Aligned_cols=1372 Identities=23% Similarity=0.242 Sum_probs=1247.7
Q ss_pred CCccccccccccccccccccccccccchhhHhHHHHHHhhhcCCCCcCCCCCcCCCCchhhhHHhhccCCCCCCcchhhh
Q 000403 1 MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLI 80 (1563)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~krv~a~~~~~~p~~~qf~~ 80 (1563)
|||++ | .++++.+ +||.++|||+|++++|+|+||+|+.+|+|++.++|+++|||||||++-|+++||+||||++
T Consensus 1 ~~~s~--~-~~met~~---~s~~~e~~~v~~i~~~~~sl~~~~~~rek~r~~~s~~~d~t~~r~~~~n~~~qe~~eQ~ll 74 (1517)
T KOG1883|consen 1 KPGSA--E-DTMETQD---TSSPQEVQKVNRIKEAFKSLVEENPTREKFRPLTSNIGDETALRIQFGNMMMQEKEEQSLL 74 (1517)
T ss_pred CCcch--h-hhhhccc---cccHHHHhhHHHHHHHHHHHhhcCCcccccchhhcCCCchhhHHHhcCCCCCCchhHHHHH
Confidence 45555 7 6777777 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhccCCChhHHhHHHHHHHhhhhhhcCCCCcchhHHHHHHHHhhhcccccccccHHHHhhhhhhhcccccCCcccc
Q 000403 81 DFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAM 160 (1563)
Q Consensus 81 df~~l~~q~~~~~ql~~~te~~~~~~~~qc~~h~p~~~fll~~~~~l~~~~~~~~d~~l~~~~~~~~~~e~~~~q~~~~~ 160 (1563)
||+-++.+|.+.+|.|.++|++|+++|.||++||||++|++| .||++|||+ ++|+++.|+++.+|.+..||+++.
T Consensus 75 ~~~l~~~h~~~~~~~r~~~~~~l~~lVdq~l~~a~~~~~i~~---~LC~~~li~--t~l~~l~s~i~ae~~kli~~vi~~ 149 (1517)
T KOG1883|consen 75 KELLKMVHGVAEKPDRVFLGTNLERLVDQLLRYARQKGAIST---NLCAEGLIM--TSLFRLCSRIWAEKFKLINDVIPK 149 (1517)
T ss_pred HHHHHHHhccCCccceehHHHHHHHHHHHhccccchhhhHHH---HHHHHHHhh--cchHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999 899999999 999999999999999999999986
Q ss_pred cccccccccccCCCCCCCCCCCCCCccCCCCCCCCCCccCCCCCcccccc-----------------ccccccccccccc
Q 000403 161 PAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIE-----------------TSVCAAMSPVKSS 223 (1563)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~g~~~~~~~~-----------------~~~~~~~~~~~~~ 223 (1563)
.+..+ ..++++. -|.|.||+ +|..+..+ --+|.-=+-..+.
T Consensus 150 vdykG----vr~ilkv-----------------ilesa~~~-~P~svsv~~V~Qi~~a~~vir~i~dRns~llpa~~~~~ 207 (1517)
T KOG1883|consen 150 VDYKG----VRNILKV-----------------ILESALRR-LPYSVSVEQVNQILAAENVIRHIVDRNSCLLPAYFTLS 207 (1517)
T ss_pred hchhh----HHHHHHH-----------------HHHHHhcc-CCCccCHHHHHHHHHHHHHHHHHHhccccccchHHhHH
Confidence 65554 2233332 34555665 55543221 1112111233344
Q ss_pred ccccCCC--c-cccc-----------ccCCCCcccCCCccccchhHHHHHHHHHHHHHHHHhcCCCcccchHHHhhcccc
Q 000403 224 DVSCTGQ--Q-FTTR-----------VNSSQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQ 289 (1563)
Q Consensus 224 ~~~~~~~--~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~w~~~c~~vi~~l~~e~~~rvpfy~l~~~~~q 289 (1563)
+|-..-. . --.| -.+..|+..+-|++|++++.+++| .+|||++|.|+-++ -|.|||+++|++.+
T Consensus 208 eImrg~p~~~l~h~~l~~~m~d~vv~fR~~a~~~~i~Gr~~~~pi~l~~~-~~~l~~~W~l~~~~-~r~pf~~~~~slpy 285 (1517)
T KOG1883|consen 208 EIMRGMPKQALMHWRLTELMADFVVHFRPTADLSSICGRGSVLPIVLHPG-FYPLTNSWELDGLT-LRFPFKGPHHSLPY 285 (1517)
T ss_pred HHHhcCCcccccHHHHHHHHHHHHHHhcccccchhhcccccccccccccC-cccchhhheecccc-ccccccccccccCC
Confidence 4433211 0 0001 115556665659999999999999 99999999998888 99999999999999
Q ss_pred ccccCCChhHHHHHHHHHhhchhhHHHHHhhhccccCCCCccccccccccCCccccccccccccccccCCcccCCCcchh
Q 000403 290 FIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGE 369 (1563)
Q Consensus 290 ~~e~~pddeal~~l~~e~hrrrd~~~~hm~~~dqhlhcptf~t~~~~~~~~~~~~~~~~~~lr~s~~ty~~~~ge~l~ge 369 (1563)
++|++|||+|||++|||+|+|||.|||||+|.|||+|||||++|||.++.+.++-.||+.++|.|||+ +|.||
T Consensus 286 ~~E~~~~~~all~~Ileqp~~RDv~~Ml~L~~~qk~rcp~~~e~lI~~~I~a~e~~EAe~~~~~spi~-------~l~w~ 358 (1517)
T KOG1883|consen 286 RPELTETQLALLRYILEQPYSRDVMAMLSLHKPQKQRCPTLEEQLISLMICAMEMAEAESLPETSPIP-------RLQWD 358 (1517)
T ss_pred ChhhccchHHHHHHHHhhhcchhHHHHhhcCchhhhcCCcHHHHhHHHhhhccccccccccccCCCCC-------hhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hhhhhccCCCccHHHHHHHHHHHhhcCCChhhhhhhheeccccCCCCC-CCCCcceeccchhhHHHHHHHHHHccccc--
Q 000403 370 DLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYDMISEAVIDRIVELLKLTN-- 446 (1563)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~mi~ea~i~r~~~ll~~~~-- 446 (1563)
+++++|.+|+| ++++|+||++|+++ ++|+++||||...| ++++|+||+++|+|+|.+||++|++|++|
T Consensus 359 ~Ls~~liygvl---~~~~~~~h~v~~l~------~~L~~~~~~r~rdq~mwI~~qviss~i~~~al~D~~lev~kL~n~l 429 (1517)
T KOG1883|consen 359 HLSSQLIYGVL---FQFLSFKHFVLVLH------NKLKRCKLTRGRDQLMWILLQVISSSIQKNALDDAFLEVVKLFNLL 429 (1517)
T ss_pred HHHHHHHHHHH---HHHHhHHHHHHHHH------HHHhhcCcccccchhheeeHHHhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999999999 99999999999998 99999999999999 99999999999999999999999999832
Q ss_pred ------------ccccchhhhHhhhhHHHHHHhcccccHHHHHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHhhh
Q 000403 447 ------------SEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGAL 514 (1563)
Q Consensus 447 ------------~~~~~w~eWl~fsd~f~fl~~~~~~df~~~i~kL~~r~~~gd~~~~~~nhv~wll~q~i~~~~v~~~~ 514 (1563)
+.-+||++|+.|+|+|+||+|.||.||.|++++| +|++|+ |+ |+|+|++|.+++|
T Consensus 430 f~~dlv~~~~pdin~~~~~r~la~~~iwi~L~Kka~~Df~d~~~pl--------nh~Lr~-H~-~fLqq~vr~~~~m--- 496 (1517)
T KOG1883|consen 430 FPGDLVWMGAPDINKALFARFLAAACIWIHLEKKACTDFADKMPPL--------NHTLRS-HI-KFLQQGVRNFDSM--- 496 (1517)
T ss_pred cCcceeeecCCCcCHHHHHHHHHHhhhhhhhhhhhccchhhccCcc--------cHHHHH-HH-HHHHHHHHhhhhc---
Confidence 2238999999999999999999999999999999 889998 88 9999999999999
Q ss_pred hccccccchhhhhhhcccccCCCCCCCCcchhhhhhccccceEEEeeccchHHhhcHHHhhhhhhHHHHHHHhhcccccc
Q 000403 515 NSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMM 594 (1563)
Q Consensus 515 ~~~~~~v~t~~~ilsf~~~d~~~d~n~pq~~~~~f~~s~q~l~iw~~n~~~~~~l~~~~~q~~k~~~eww~~~~kg~~~~ 594 (1563)
+|..|++++++|+ |++|+..|+++|++.|||+++||||+|||.+.+++|++++++++-+++ +|+||... ||
T Consensus 497 -~n~~kia~l~niy--~~~t~~~~~~~Pm~~LLe~i~~~~t~ri~~lst~~~A~~~~t~lpv~~-lDslt~~s-----km 567 (1517)
T KOG1883|consen 497 -SNDAKIALLCNIY--RTSTNMEKFIVPMGQLLESISSNGTKRIPELSTKRMAVNSFTALPVEF-LDSLTVHS-----KM 567 (1517)
T ss_pred -cchHHHHHHHHHH--hccccccccCCcHHHHHHHHhcCCccccCCCCcceeeecccchhhHHH-HHHHHHHH-----HH
Confidence 7889999999999 999999999999999999999999999999999999999999999999 99999966 89
Q ss_pred cccccCccceeeeeeehhcccchhhhHHHHhhhcCccccccCCCCCCCCccccccccccccchhhhhhhhHHHHHHHHHH
Q 000403 595 DYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQ 674 (1563)
Q Consensus 595 d~~n~DD~~iaml~vlssT~a~P~~Dtvm~~l~~~~v~e~ipg~~~~pn~~i~a~~~~~PLpmslLDsLTvh~km~Li~q 674 (1563)
||+++|++.++++|++..++|||.|+...+|.++++..+ .
T Consensus 568 sli~~~~~~l~sf~tv~l~~aq~~~~va~~~~s~~~~~~-~--------------------------------------- 607 (1517)
T KOG1883|consen 568 SLIHQCFQPLRSFSTVRLKSAQVKETVAKACESEDYEMA-V--------------------------------------- 607 (1517)
T ss_pred HHHHhcccccceeEEEEecccccchhhhhccccchhhhh-h---------------------------------------
Confidence 999999999999999999999999988999997766665 3
Q ss_pred HHHhhhcCCccCChhHHHHHHHhhhcccc-hhhHhh------------hhhhhhcCchhhh--hcchhhHHHHHhhccc-
Q 000403 675 MEDSIFGGQVVASIAMVETYTRLMLLAPH-SLFRSL------------FSHLAQRNPSLLA--KVGVTPLVLEIVNYRL- 738 (1563)
Q Consensus 675 I~~~lf~~~~vPSPAlVETYsRLLvyte~-sL~~k~------------f~~lsQ~~psv~k--a~g~l~~LLEilSYRL- 738 (1563)
|.+|||+|+++|+|+ ++++|+ | ++|.+|+|++ +|+.+|+++|++|||+
T Consensus 608 --------------~~le~~arllv~~ei~sl~isg~~~~~~~~~~~~F--lsqllptv~~~hay~~l~tl~~~~syr~h 671 (1517)
T KOG1883|consen 608 --------------ALLETYARLLVYVEIESLGISGEHQNVQAKDQCYF--LSQLLPTVFKHHAYSKLHTLVEMFSYRTH 671 (1517)
T ss_pred --------------cccchhhhhheeeeeeccccCchhhhhhhHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666 456665 6 8999999999 9999999999999999
Q ss_pred --cccccccCcchhHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcc---------ccccccCCCCcchhhHhHH
Q 000403 739 --LPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRD---------FFSLKREGKGSTEFTETLN 807 (1563)
Q Consensus 739 --~p~YRyq~ks~~llhsL~~ii~~~~nq~q~h~llr~lEs~~LrLIlsl~s---------f~~~q~~~~~ps~~SEELN 807 (1563)
+++||+|+.+. +|.+..+ ++.|++|.|. |+|++++|+|+++|+ ||..|.+|++|++||||||
T Consensus 672 hiq~~~r~~ll~~--l~~~~lv--p~~~~~g~h~---ci~s~a~rliTalk~ae~~~q~~~ffs~k~pg~~psa~seeLn 744 (1517)
T KOG1883|consen 672 HIQNHYRVQLLSR--LHELFLV--PQTNWAGLHL---CIESTALRLITALKSAEMQPQFARFFSDKVPGQVPSAESEELN 744 (1517)
T ss_pred cCCchHHHHHHHH--HHHHHhh--HHHHhhhhhh---hHHHHHHHHHHHhcccchhHhHhhhcccCCCCcCcccccHHHH
Confidence 89999999996 9988777 8999999998 999999999999987 9999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccchhhhhHHHHHHHHHhhCCCCCchhhhccCc-HHHHHHHhcccCCCCcchhhHHHHHHHHHH
Q 000403 808 RITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFP-SLLRDALIGRIDKRGLTIQAWQQAETTVIN 886 (1563)
Q Consensus 808 R~LIlTLARsiKitGiad~~~g~~~k~~L~~Im~ntph~WpekTLr~FP-~~L~e~f~~~~D~~~l~~q~~qql~~tV~e 886 (1563)
|++|+||||++||||++|.++|+|||+||++||++|||+||+|||+||| ..|.++|.+| |.++++|||++|+|+|
T Consensus 745 R~~IlTlara~kvtggad~i~~vw~ktml~tIi~~t~h~W~ektls~FP~~aL~a~~~q~----~~~~en~qql~~~V~n 820 (1517)
T KOG1883|consen 745 RMLILTLARAVKVTGGADDIQGVWCKTMLPTIINTTPHGWPEKTLSCFPKWALDAIFAQN----NSPAENTQQLKKDVEN 820 (1517)
T ss_pred HHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHhcCCCCCchhhhhhCCcHHHHHHHhcC----CCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 6777777766 8999999999999999
Q ss_pred HHHhccCCCCChhhHhhhhcccCCCCCcchHHHHHHHhhCCCCCCChhhHHHHHhhcChhHHHHhhhhhhcceeeehhhc
Q 000403 887 QCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVE 966 (1563)
Q Consensus 887 e~r~~~Sms~E~~~V~~~i~hf~p~~~~fLC~l~~ml~~~~~e~I~~~~lyrVLe~ispr~vta~i~~fvDyLv~e~~~e 966 (1563)
|||+|+||+|||+||..|+.|. .+|+|||+++...|.+++||||+++ |||||++||||+++|+||||||||++++
T Consensus 821 e~r~~tSmsnen~~V~~yl~~~--~p~~~lCll~~~~m~~~teNIns~~-yrVLe~isprelva~~~tlvDyLvad~~-- 895 (1517)
T KOG1883|consen 821 EYRMWTSMSNENDIVIHYLEDR--DPPLFLCLLFAYKMVDETENINSEF-YRVLEKISPRELVAHGRTLVDYLVADAK-- 895 (1517)
T ss_pred HHHHhcCCCCcchhhhhhccCC--CchhHHHHHHHHHhcccccccCHHH-HHHHHhcCHHHHHHHHHHHHHHhhhhhh--
Confidence 9999999999995555555553 4699999996666766799999999 9999999999999999999999999887
Q ss_pred cccCCchhHHHHHHHhHhhhhhhhccccchhhhhhhhccCCCCCc-----hhhHhhhhcCcHHHHHHHHHHHHcCCCCCc
Q 000403 967 LQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPH-----ALRIVITLLDRQELQQRVKLYCMNRGPPEH 1041 (1563)
Q Consensus 967 lq~g~~~Q~lv~kcv~~LndmIWkynIVpLDRLLL~LalR~dEgn-----~liIqlLLL~~~EFqqRV~~Fv~~~~spEH 1041 (1563)
.++++|++++||+++||+||||||++|+||||||||+|++||+ ++|||++|+++ |||+||++||++ |+|||
T Consensus 896 --t~~~~e~~l~k~~~~la~mvwkf~vl~lDrllL~Limr~~~~nda~vc~~Ia~~lLltp-df~~RI~~yck~-nsPeH 971 (1517)
T KOG1883|consen 896 --TSDCGEKTLKKCAKALALMVWKFNVLTLDRLLLCLIMRPHEGNDAQVCIQIAQLLLLTP-DFRNRIRWYCKQ-NSPEH 971 (1517)
T ss_pred --cccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccccCCcchhHHHHHHHHhcCH-HHHHHHHHHHhc-CCcch
Confidence 5778999999999999999999999999999999999998887 55556666555 999999999997 99999
Q ss_pred cccccc------hhhhhhHHH---HhccC--CCCCCCCcchhhHHhhhcCchhHHHHHHHhcCc-hhhHHHHHHHhcccc
Q 000403 1042 WLYSGL------FKRVELQKA---LGNHL--SWKERYPTFFDDIAARLLPVIPLIVYRLIENDA-MDSADRVLATYSSFL 1109 (1563)
Q Consensus 1042 W~~s~~------fhrkfPEk~---lg~~l--s~~~~lPvYFgNvcLR~LPViDiVIhR~LE~~~-~k~letLL~~~g~LY 1109 (1563)
|+ ++| ||++|||++ ++++. +.++|||+||||||+|||||+|+|+|||||+++ .|.+++||+|+|.||
T Consensus 972 wl-~~~~~k~~~yhka~pe~~~~e~~~qyd~~~~~~lPtyf~~v~~RlLPV~d~vlhr~lE~~~~~k~~~~lL~hls~ly 1050 (1517)
T KOG1883|consen 972 WL-TEWIKKHVKYHKAYPEKEACELARQYDSSSNVHLPTYFGNVCLRLLPVMDQVLHRFLELQGVEKLLPQLLDHLSMLY 1050 (1517)
T ss_pred hh-HHHHHHHHHHHHhcchHHHHHHHHhcCCccccCCccHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99 888 899999965 55553 447899999999999999999999999999999 699999999999999
Q ss_pred ccCCcchhhhhHhHHhhhccC---ch--HHHHHHHhhcccCCCCCCcchhhhccCCCCCCCCChHHHHHHHHHHHhcccc
Q 000403 1110 AYYPLRFSFVRDILAYFYGHL---PG--KLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIP 1184 (1563)
Q Consensus 1110 kYHd~PvTFvY~tLhYy~~~L---p~--kLV~~Ilg~Ld~~r~plSEsF~~y~~~~~~~~~P~~~Yy~~Ll~RLvnnvlp 1184 (1563)
||||+|+|||||||||||+|| |+ |||.+|.++|++ ++|||+|.+|+++++..|||+++|||.||+||||++.+
T Consensus 1051 kfH~~pitflyntl~y~~~hL~~~p~kk~lv~a~~~~lse--i~lSE~f~k~~~q~~ap~~pel~y~~sLi~rLvdt~~~ 1128 (1517)
T KOG1883|consen 1051 KFHDRPITFLYNTLHYYEHHLRDRPLKKKLVLAIATQLSE--IRLSEAFEKFNHQKGAPWSPELDYYMSLIDRLVDTLDG 1128 (1517)
T ss_pred hcCCCceehhHHHHHHHHhhhhcCcchhhHHHHHhhhhhh--CccchhHHHHhccCCCCCCCcHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999 44 899999999988 66999999999999999999999999999999988843
Q ss_pred ccccCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcccccCCCCcchhhhhhhcceeecccCCCCHHHHHHHHHHhh
Q 000403 1185 ALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIV 1264 (1563)
Q Consensus 1185 ~~~~~~~~~~~~~~s~~~~~~~~p~~s~~~p~~~s~~DwrF~EfpnPga~al~vL~tacIELLsLPvsp~~Vv~aLvdvv 1264 (1563)
++ +++|+.+||||+||+||++||+|| +|||+|++|++|..++++|+|++
T Consensus 1129 --------------~l--------------~~~f~ncdwR~~e~~n~~a~al~~---~cvelma~~~sgp~~asalinv~ 1177 (1517)
T KOG1883|consen 1129 --------------KL--------------TPPFVNCDWRFNEFPNPGAHALYV---TCVELMALPVSGPTVASALINVM 1177 (1517)
T ss_pred --------------CC--------------CCCCcccccccccCCCcccccccc---chhhhcCCCCCcHhHHHHHHHHH
Confidence 21 235666999999999999999995 77999999999998888877766
Q ss_pred hcc----------------------------------------CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000403 1265 VNI----------------------------------------QPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLG 1304 (1563)
Q Consensus 1265 v~~----------------------------------------~~~l~q~~~~~~~~~~~~~~~~~~Ptsps~~~~~~~~ 1304 (1563)
++. +.+.+|+++|+||.-+|+|+++++|++||+|.|++ +
T Consensus 1178 ~~~q~~~p~~~~~~na~~l~itaLP~~y~~~l~d~lv~vivnp~~t~~t~~~gf~~~~fd~~~~s~l~~~ps~a~Tl~-a 1256 (1517)
T KOG1883|consen 1178 QMKQHARPFNQLIVNATGLLITALPEPYWNALHDRLVAVIVNPQSTGETANLGFEFILFDFYEESLLLNEPSRARTLN-A 1256 (1517)
T ss_pred hhCCCCCchhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHcCccccchhhcCCCceeeccccchhccccCCccchhhH-H
Confidence 544 44567889999999999999999999999999999 9
Q ss_pred CCCCCCCccCcccccccccccccccchhhHHHHHHHHHHhcCChhHHHHHHHHHHHHhcc-CccccCCCCCccccccccc
Q 000403 1305 ASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKE-SWWLADGKRSLGELDSAVG 1383 (1563)
Q Consensus 1305 ~~~~~~~~~giN~~~~~~~~~~~~~~~s~l~INAiGLLLaaLP~~f~~~ly~ei~~vik~-~w~l~d~k~s~~elds~~~ 1383 (1563)
.++|+-.|+|||.-+|+||+ |||++++|..+++|||.+++||.+|+..+|.|..|..-+ .||++|++.+.+|.| +|
T Consensus 1257 ~s~s~~lh~si~~lsf~sr~-yt~~ll~cvkte~~llyl~~L~~pfl~r~qle~~r~~~e~~~~l~d~l~s~~e~~--v~ 1333 (1517)
T KOG1883|consen 1257 ISHSVWLHCSISLLSFFSRE-YTERLLPCVKTEKQLLYLLHLVGPFLQRKQLESQRENFEIVVLLYDKLGSVDEEG--VE 1333 (1517)
T ss_pred HHhHHHhhcchHHHHhhhHH-hHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhcC--Cc
Confidence 99999999999999999999 999999999999999999999999999999999999998 899999999999988 99
Q ss_pred ccccCCcccccccCc-chhHHHHH-HHHHHHhcCChhhhhhHHHHHhhcCccchHHHHHHHHHHHhcchhhhhhhhhhhH
Q 000403 1384 YALLDPTWAAQDNTS-TAIGNIVA-LLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFN 1461 (1563)
Q Consensus 1384 y~l~d~t~a~q~~t~-t~~~~ilA-L~Ha~~~h~~~~~L~~~~~~i~~LrPv~Te~qL~~~~rLvGP~L~R~~~eR~~~~ 1461 (1563)
|...||.|+.++|+. +.+|++++ .+|++|.+++.+|..++.-++.+.||+++.++...+++.+||.+||.....+.+.
T Consensus 1334 l~ymdpicd~~yn~ky~~~Gdivkn~~~a~f~nLp~~l~drlrfi~~~s~p~~~~at~~~~~~s~~~~~pa~sS~q~p~~ 1413 (1517)
T KOG1883|consen 1334 LVYMDPICDFLYNCKYFFAGDIVKNTAEAIFANLPPKLRDRLRFITHQSEPTEEQATPPEKENSPEESTPAVSSLQAPLL 1413 (1517)
T ss_pred eeecchHHHHHhhhhhhhhhHHHHHHHHHHHHcCCHHHHhhhhhhhhcccccccccccchhhcCcccCCcccccccCccC
Confidence 999999999999988 99999999 9999999999999999998889999999999999999999999999999989999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCccchhhhhhhhhhceeeEEeccCCCCCCCCCCchhhhhhhhHhhhhCCHhHHHHhcc
Q 000403 1462 KTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSH 1541 (1563)
Q Consensus 1462 k~l~lll~~L~~vVdK~sq~~~~vels~iD~ICDFLyHIYMFvG~g~~~~d~~K~~vE~~~~~~~iI~~LrP~LQ~~LrH 1541 (1563)
++...+.--..+++||..|..+.++....++..|+.+|+-+++||||.||.++|+++.+|+++|+|-+-++|.+||.+.|
T Consensus 1414 ~~~q~~p~~qq~~~~hq~q~t~q~q~~Qqq~~~~~qqqlqhq~~n~~~vQt~s~p~p~~l~~~g~~~~~~~~y~qHmqqH 1493 (1517)
T KOG1883|consen 1414 PSHQQMPPPQQHSSSHQMQDTSQHQTIQQQSNHPTQQQLQHQIPNMSMVQTMSPPYPGFLHPSGPVGHVPMQYGQHMQQH 1493 (1517)
T ss_pred chhhhCCCccCCchhhhhhhhhHHHHHHHHhcchHHHHHHHhccccceeeecCCCCCccccccccccccchhhHHHHHhc
Confidence 99888888888999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhhccCcccc
Q 000403 1542 LKPDVNSSIYAATHPKMV 1559 (1563)
Q Consensus 1542 L~~d~~ss~~aa~h~~~~ 1559 (1563)
.+..+++++||+.|..+.
T Consensus 1494 ~h~~~~~~~~a~~h~~n~ 1511 (1517)
T KOG1883|consen 1494 PHLPHHQQMPAPMHTMNP 1511 (1517)
T ss_pred cCCCccccCCcchhccCc
Confidence 999999999999997653
No 2
>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice.
Probab=100.00 E-value=8.2e-218 Score=1996.99 Aligned_cols=987 Identities=29% Similarity=0.439 Sum_probs=868.1
Q ss_pred HHHHHHHHHHhhcCCChhhhhhhheeccccCCCCCCCCCcceeccchhhHHHHHHHHHHccc-----ccccccchhhhHh
Q 000403 383 ERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKL-----TNSEVNCWHDWLI 457 (1563)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mi~ea~i~r~~~ll~~-----~~~~~~~w~eWl~ 457 (1563)
+.=.|.+|..||..=|.|-=--+| +.+.|..+ ....=|..++=|+|+|.. ++++.++|+ |++
T Consensus 276 ~~q~~lL~~vL~Qp~srd~v~~~l------~~~~~k~~------~~~~ee~l~~li~~aM~~~e~~~~~~~~~~~~-W~h 342 (1341)
T PF11573_consen 276 EPQTRLLYYVLRQPYSRDMVCSML------GLQQQKQR------CPALEELLVDLIIEAMEESESEDENEPINRWQ-WLH 342 (1341)
T ss_pred chHHHHHHHHHcCcchHHHHHHHh------cccccCcc------chHHHHHHHHHHHHHHHHHhcCCCCCCccchH-HHH
Confidence 456789999999988888544444 33322221 111224445555666665 345669999 999
Q ss_pred hhhHHHHHHhcccccHHHHHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHhhhhccccccchhhhhhhcccccCCC
Q 000403 458 FSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCT 537 (1563)
Q Consensus 458 fsd~f~fl~~~~~~df~~~i~kL~~r~~~gd~~~~~~nhv~wll~q~i~~~~v~~~~~~~~~~v~t~~~ilsf~~~d~~~ 537 (1563)
||||++|||++||+||.+|++||.+++++.+ ++.++|||||+|+|+|+++++||.|++|.++|.+..++|.+++++...
T Consensus 343 ls~~viy~~l~~~i~F~~~v~~L~~kL~~~~-~~r~Rd~vMWvllQ~is~~i~~n~lsd~~~~v~~L~~~Ly~e~e~l~~ 421 (1341)
T PF11573_consen 343 LSSQVIYFMLFQFISFPDFVKKLHEKLTGRN-YRRGRDHVMWVLLQFISGSIQKNPLSDDFQPVLDLYNLLYPEKEPLPV 421 (1341)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc-eeeccchhHHHHHHHHhhhhccccchhhHHHHHHHHHHhccCCCCCCC
Confidence 9999999999999999999999999999855 788999999999999999999999999999999999999999999877
Q ss_pred CCCCCcchhhhhhccccceEEEe-eccch--HHhhcHHHhhh-hhhHHHHHHHhhcccccccccccCccceeeeeeehh-
Q 000403 538 DPNNPQSILLDFISSCQNLRIWS-LNTST--REYLNNEQLQK-GKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSY- 612 (1563)
Q Consensus 538 d~n~pq~~~~~f~~s~q~l~iw~-~n~~~--~~~l~~~~~q~-~k~~~eww~~~~kg~~~~d~~n~DD~~iaml~vlss- 612 (1563)
...||++...+|+++| ||. |||++ +.+..++++.+ .|+++|||++..+|.+ +.|||+++.||+|+++|
T Consensus 422 pd~~~~~~v~~~aaaC----iWi~L~kk~~~~~~~~~~~i~~~lk~~~e~l~~~~~~~~---~~n~d~~~~~~lavl~Na 494 (1341)
T PF11573_consen 422 PDDNPPSCVRFFAAAC----IWIHLSKKAQSKNYEINRQIPEHLKQIHEFLQHLTSPNN---IMNLDMRSDYMLAVLCNA 494 (1341)
T ss_pred CCCCcHHHHHHHHHHH----HHHHHHhhccccccccccCCcHHHHHHHHHHHHHhcCcc---ccccccccchhhhhhhhh
Confidence 7777999999999999 775 67766 55568899988 4999999999876555 89999999999999986
Q ss_pred -cccchhhhHHHHhhhcCccccccCCCCCCCCccccccccccccchhhhhhhhHHHHHHHHHHHHHhhh----cCCccC-
Q 000403 613 -TMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIF----GGQVVA- 686 (1563)
Q Consensus 613 -T~a~P~~Dtvm~~l~~~~v~e~ipg~~~~pn~~i~a~~~~~PLpmslLDsLTvh~km~Li~qI~~~lf----~~~~vP- 686 (1563)
++++|.++++|+|+...+..+.-+++...++.+++|+++++||||++||+||+|+||+|++||+++++ +|+.+|
T Consensus 495 Ys~~~~~~~~vm~~l~~~i~g~~~~~~~~~~~~~~~a~~~~~Plpm~lLd~LT~h~k~sL~~~i~~~l~~~a~~k~~~P~ 574 (1341)
T PF11573_consen 495 YSTDQPYFDRVMNWLVEAIDGEPDPSQPFELSYGRMAFNKTSPLPMSLLDSLTVHSKMSLIHSIVTHLFKFAQSKQPVPA 574 (1341)
T ss_pred hccCcHHHHHHHHHHHHHhccCCCCCCCCCCCccccccCCCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCc
Confidence 58999999999999888888755554446688999999999999999999999999999999999875 478999
Q ss_pred ----ChhHHHHHHHhhhcccc-hhhHhhhhhhhhcCc-----hhhh--hcchhhHHHHHhhccccccccccCcchhHHHH
Q 000403 687 ----SIAMVETYTRLMLLAPH-SLFRSLFSHLAQRNP-----SLLA--KVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYD 754 (1563)
Q Consensus 687 ----SPAlVETYsRLLvyte~-sL~~k~f~~lsQ~~p-----sv~k--a~g~l~~LLEilSYRL~p~YRyq~ks~~llhs 754 (1563)
+||+||||+|+|+|+|+ +||.|.| .+|..| .++| +||++|+|||||||||+++++| +|.+.|+|.
T Consensus 575 ~~~~s~alvETY~rlL~~~eiesL~~r~l--~s~~~~~~~~~~~~k~~a~~~l~~LlEilsYRL~~l~~~-~k~~~L~~l 651 (1341)
T PF11573_consen 575 VFETSPALVETYSRLLVYKEIESLGIRSL--ASQLVPDRSPNTVQKSQAWGQLHTLLEILSYRLHHLQPY-YKVQLLSHL 651 (1341)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHh--HHhhcccccccccccccchHHHHHHHHHHHhcccccCcc-chHHHHHHH
Confidence 99999999999999999 5899988 777777 7777 9999999999999999665555 887776777
Q ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHhhcc---------cccc-ccCCCCcchhhHhHHHHHHHHHHHHHHhcccc
Q 000403 755 ITKIISALKVKRGDHRVLRLAENLCMNLILSQRD---------FFSL-KREGKGSTEFTETLNRITVIALAIIIKTRGIA 824 (1563)
Q Consensus 755 L~~ii~~~~nq~q~h~llr~lEs~~LrLIlsl~s---------f~~~-q~~~~~ps~~SEELNR~LIlTLARsiKitGia 824 (1563)
.+.+ ..+++|+||+++|+||+|||||+++++ |+.. |.++...+++||||||++|+||||+|||||++
T Consensus 652 ~~~~---~~~~~~n~qL~~~~E~~~Lrli~~Lgs~~~~~~~~~~~~~~k~Pk~~~~~~seELNR~lIltLARsikitg~~ 728 (1341)
T PF11573_consen 652 HTLI---SVNQPNNHQLYRLLENTCLRLITGLGSSEKQPQLSRFFNECKNPKTFTSQESEELNRILILTLARSIKITGIG 728 (1341)
T ss_pred HHHh---ccCccccHHHHHHHHHHHHHHHHHcCccccchHHHHHHHhccCccccccccCHHHHHHHHHHHHHHHhccccc
Confidence 6544 457888999999999999999999987 2322 23555668899999999999999999999866
Q ss_pred cch-hhhhHHHHHHHHHhhCCCCCchhhhccCcHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHhccCCCCChhhHhh
Q 000403 825 DAD-HVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKT 903 (1563)
Q Consensus 825 d~~-~g~~~k~~L~~Im~ntph~WpekTLr~FP~~L~e~f~~~~D~~~l~~q~~qql~~tV~ee~r~~~Sms~E~~~V~~ 903 (1563)
+.. ++.||+++|++||+++||+||+||++|||++|+++|+++.+++ ++|||++++|++||++|+++++|++||+.
T Consensus 729 ~~~~~~~~~~e~L~~i~~~t~h~Wp~~Tl~~FP~~l~~~~~~~~~~~----~~~~~~~~~ve~e~~~~~~~~~e~~~v~~ 804 (1341)
T PF11573_consen 729 ADSQSQEWCKEFLEQIMANTPHGWPEKTLRCFPDFLREFFEQNNDTR----EPKQQQKKQVEEEYRQWLSMSNENQIVMH 804 (1341)
T ss_pred ccchhhhHHHHHHHHHHHhCCCCCchHHHHhCCHHHHHHHHhCCCCC----cccHHHHHhHHHHHHHHHccCChHHHHHH
Confidence 544 7799999999999999999999999999999999999984443 89999999999999999999999977777
Q ss_pred hhcccCCCCCcchHHHHHHHhhCC--CCCCChhhHHHHHhhcChhHHHHhhhhhhcceeeehhhccccCCchhHHHHHHH
Q 000403 904 YLSHSFPQHRQYLCAGAWILMQGH--PENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKAC 981 (1563)
Q Consensus 904 ~i~hf~p~~~~fLC~l~~ml~~~~--~e~I~~~~lyrVLe~ispr~vta~i~~fvDyLv~e~~~elq~g~~~Q~lv~kcv 981 (1563)
|++| ++|++|||++|||+|+++ +++|++++ |||||+||||++++|+||||||||+|+++ .+++++ ++||+
T Consensus 805 f~~~--~~~~~fLC~i~~~l~~~~~~~~~i~~~~-y~vLe~i~p~~l~~~i~~fvDylv~e~~~----~~~~~~-~~k~v 876 (1341)
T PF11573_consen 805 FSDH--NTHPLFLCVIWKMLMENQDETENISSVF-YKVLERISPRELTAHIRTFVDYLVYEFKV----SQDGQQ-LFKCV 876 (1341)
T ss_pred hccC--CCCceeHHHHHHHHHhhhcccccccHHH-HHHHHhcCHHHHHHHHHHHHHHHHHHHhc----CCcHHH-HHHHH
Confidence 7766 679999999999999433 67899987 99999999999999999999999999985 234556 89999
Q ss_pred hHhhhhhhhccccchhhhhhhhccCCCCCc-----hhhHhhhhcCcHHHHHHHHHHHHcCCCCCccccccc------hhh
Q 000403 982 ANISFFVLTHELLPLDILLLALIDRDDDPH-----ALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGL------FKR 1050 (1563)
Q Consensus 982 ~~LndmIWkynIVpLDRLLL~LalR~dEgn-----~liIqlLLL~~~EFqqRV~~Fv~~~~spEHW~~s~~------fhr 1050 (1563)
++||+|||||||||||||||||++|++||+ ++|||++|++++|||+||++||++ ++||||+++|| ||+
T Consensus 877 ~~L~~~iw~~~ivplDrllL~L~~r~~~d~~a~i~~~Ii~~lll~~~ef~~Rv~~F~~~-~~~ehw~~~~~~~k~~~yh~ 955 (1341)
T PF11573_consen 877 DTLNDMIWKYNIVPLDRLLLALALRPHDDNDAQICFQIIQLLLLKSPEFQNRVQWFVKI-NPPEHWTQSDWFKKHLEYHS 955 (1341)
T ss_pred HHHHHHHHHhceeeHHHHHHHHhccCCCchhhHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCHhhcccchHHHHHHHHHH
Confidence 999999999999999999999999997776 467899999999999999999999 99999999999 689
Q ss_pred hhhHHH----HhccC-----CCCCCCCcchhhHHhhhcCchhHHHHHHHhcCc---hhhHHHHHHHhccccccCCcchhh
Q 000403 1051 VELQKA----LGNHL-----SWKERYPTFFDDIAARLLPVIPLIVYRLIENDA---MDSADRVLATYSSFLAYYPLRFSF 1118 (1563)
Q Consensus 1051 kfPEk~----lg~~l-----s~~~~lPvYFgNvcLR~LPViDiVIhR~LE~~~---~k~letLL~~~g~LYkYHd~PvTF 1118 (1563)
||||++ +++++ +++++|||||||+|+|||||+||||||+||+++ .|+||++|++||+||||||+|+||
T Consensus 956 kfPE~f~~e~~~~~~~~~~~~~~~~lPvYfgn~~lR~LPVlDivi~R~lE~~~~~~~~~le~lL~~~~~LyryH~~P~tf 1035 (1341)
T PF11573_consen 956 KFPEKFYFEALGSHTSSEESSQNPHLPVYFGNVCLRLLPVLDIVIHRFLELPAPPLSKSLETLLDHYGPLYRYHDRPVTF 1035 (1341)
T ss_pred hCCcccCchhhccccCcccCCCCCCCCchhccHHHHHhhhHHHHHHHHHHhcchhhHHHHHHHHHHhhHHHHcCCcchHH
Confidence 999965 55553 468899999999999999999999999999993 888999999999999999999999
Q ss_pred hhHhHHhhhccCchH----HHHHHHhhcccCCC---CCCcchhhhccCCCC--CCCCChHHHHHHHHHHHhccccccccC
Q 000403 1119 VRDILAYFYGHLPGK----LIVRILNVFDLSKI---PFSESFPQHISSSNP--VMCPPLDYFATLLLGLVNNVIPALNYN 1189 (1563)
Q Consensus 1119 vY~tLhYy~~~Lp~k----LV~~Ilg~Ld~~r~---plSEsF~~y~~~~~~--~~~P~~~Yy~~Ll~RLvnnvlp~~~~~ 1189 (1563)
||+|||||||+|+++ ||++|+|+++++|+ +|||+|.+|+++++. +|+||++||++||+|||+++
T Consensus 1036 ~y~tL~yy~~~l~~~~kk~Lv~~i~g~l~~~~~~~~~lSe~f~~~~~~~~~~~~~~P~~~Y~~~Li~rL~~~~------- 1108 (1341)
T PF11573_consen 1036 LYSTLHYYEGKLRGRPKKKLVSAILGSLDESRPPGWPLSESFQQYLHQKSSPEVWVPDLDYYMELIDRLVDTI------- 1108 (1341)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHhhcccccCCCcccCHHHHHHhcccCCCCCCCCcHHHHHHHHHHHHHhc-------
Confidence 999999999999996 99999999999996 599999999997763 69999999999999999776
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcccccCCCCcchhhhhhhcceeecccCCCCHHHHHHHHHHhhhccCc
Q 000403 1190 SKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQP 1269 (1563)
Q Consensus 1190 ~~~~~~~~~s~~~~~~~~p~~s~~~p~~~s~~DwrF~EfpnPga~al~vL~tacIELLsLPvsp~~Vv~aLvdvvv~~~~ 1269 (1563)
+++ .+|+.|+.+||||+|||||++|||| ++||||||||++|++||+||||||++.++
T Consensus 1109 -------~~~-------------~~~~~f~~~dwrf~Ef~np~a~aL~---~~ciElmalP~~p~~v~~aLidvv~~~~~ 1165 (1341)
T PF11573_consen 1109 -------DGI-------------NPPPPFVATDWRFNEFPNPAAHALY---VTCIELMALPVSPEDVANALIDVVVKGYS 1165 (1341)
T ss_pred -------ccc-------------CCCCCCCCCCcchhcCCCHHHHHHH---HHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Confidence 333 2355788899999999999999998 58899999999999999999999998776
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccccccccccccchhhHHHHHHHHHHhcCChh
Q 000403 1270 TLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPD 1349 (1563)
Q Consensus 1270 ~l~q~~~~~~~~~~~~~~~~~~Ptsps~~~~~~~~~~~~~~~~~giN~~~~~~~~~~~~~~~s~l~INAiGLLLaaLP~~ 1349 (1563)
.+ |.+ . +..||||||||||+||++
T Consensus 1166 ~~--------------------P~~------------------------~------------i~~~iNaigLiltaLP~~ 1189 (1341)
T PF11573_consen 1166 VI--------------------PRE------------------------Q------------IHSWINAIGLILTALPES 1189 (1341)
T ss_pred CC--------------------CHH------------------------H------------HHHHHHHHHHHHHhCcHH
Confidence 66 442 1 238999999999999999
Q ss_pred HHHHHHHHHHHHhccCccccCCCCCcccccccccccccCCcccccccCc---chhHHHHHHHHHHHhcCChhhhhhHHHH
Q 000403 1350 FHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTS---TAIGNIVALLHSFFSNLPQEWLEGTHVI 1426 (1563)
Q Consensus 1350 f~~~ly~ei~~vik~~w~l~d~k~s~~elds~~~y~l~d~t~a~q~~t~---t~~~~ilAL~Ha~~~h~~~~~L~~~~~~ 1426 (1563)
||+++|+|+++++++..+.. .++. ..||..|||+...+..++ +.+.+++||+||+|||+++|+|+.++++
T Consensus 1190 Y~~~l~~~ii~~l~s~~~~~-~~~~------~~pf~~~~F~~~~~~~l~~~~~~~~~~lal~ha~w~H~~i~qL~~lp~~ 1262 (1341)
T PF11573_consen 1190 YWNVLHDRIIEVLTSPEMTN-LTYR------CSPFELFNFDNYEESMLEKMTNPYSYILALAHAYWHHCNIGQLTSLPQF 1262 (1341)
T ss_pred HHHHHHHHHHHHhCCccccc-cccC------CChhHhhccchHHHHHHHhhhhhHHHHHHHHHHHHHhcCHHHHHHhHHH
Confidence 99999999999999987543 2211 368999999999999888 9999999999999999999999999999
Q ss_pred H-hhcCc-cchHHHHHHHHHHHhcchhhhhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCccchhhhhhhhhhcee-eEE
Q 000403 1427 I-KHLRP-ITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHV-VHY 1503 (1563)
Q Consensus 1427 i-~~LrP-v~Te~qL~~~~rLvGP~L~R~~~eR~~~~k~l~lll~~L~~vVdK~sq~~~~vels~iD~ICDFLyHI-YMF 1503 (1563)
+ ++++| |+||+||+|+|||||||||||+.||++|+.++++++|+|++.|||+. ++++++|+|+|||||||| |||
T Consensus 1263 ~~e~l~p~VkTE~Qlly~chLV~PfL~Rf~~er~~~~~~i~i~ly~~l~~vd~~~---~~~~l~~~d~ICDllYhiKYmf 1339 (1341)
T PF11573_consen 1263 LKEKLKPHVKTEEQLLYLCHLVGPFLQRFMRERTRCLMDITIELYELLKQVDKAQ---EGVELKYEDPICDLLYHIKYMF 1339 (1341)
T ss_pred HHHhhcchhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcc---cCccceehhhHHHHhhhheeee
Confidence 7 99999 99999999999999999999999999999999999999999999963 346999999999999999 999
Q ss_pred ec
Q 000403 1504 EG 1505 (1563)
Q Consensus 1504 vG 1505 (1563)
||
T Consensus 1340 vG 1341 (1341)
T PF11573_consen 1340 VG 1341 (1341)
T ss_pred cC
Confidence 99
No 3
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=100.00 E-value=2.2e-68 Score=637.34 Aligned_cols=946 Identities=18% Similarity=0.194 Sum_probs=573.5
Q ss_pred HHHHHhhcCCChhhhhhhheeccccCCCCC-CCCCcceeccchhhHHHHHHHHHHcccccccccchhhhHhhhhHHHHHH
Q 000403 388 CIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLV 466 (1563)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~mi~ea~i~r~~~ll~~~~~~~~~w~eWl~fsd~f~fl~ 466 (1563)
.+|-.|+--=|.| =-..|-+ ..++-| -|+=|----+.|||+-.-....+++. -++.+.|+ |.+.|.+..|++
T Consensus 296 ll~~Ileqp~~RD-v~~Ml~L---~~~qk~rcp~~~e~lI~~~I~a~e~~EAe~~~~--~spi~~l~-w~~Ls~~liygv 368 (1517)
T KOG1883|consen 296 LLRYILEQPYSRD-VMAMLSL---HKPQKQRCPTLEEQLISLMICAMEMAEAESLPE--TSPIPRLQ-WDHLSSQLIYGV 368 (1517)
T ss_pred HHHHHHhhhcchh-HHHHhhc---CchhhhcCCcHHHHhHHHhhhcccccccccccc--CCCCChhH-HHHHHHHHHHHH
Confidence 4555566555555 2222222 222223 67777777788888876666665544 34445886 999999999999
Q ss_pred hcccccHHHHH----HHHHHh-hccCCccccccchHHHHHHHHHHHHHHHhhhhcc-ccccchhhhhhhccccc---CCC
Q 000403 467 KSGCIDFVDFV----DKLVSR-LQDGDNHILRTNHVTWLLAQIIRVELVMGALNSD-SRKVETTRKILSFHRED---RCT 537 (1563)
Q Consensus 467 ~~~~~df~~~i----~kL~~r-~~~gd~~~~~~nhv~wll~q~i~~~~v~~~~~~~-~~~v~t~~~ilsf~~~d---~~~ 537 (1563)
.+.+..|.+|| .||+++ +..| +++++|.+.|+|...+.+|++..- ..-|+-+- +-|--+= ..+
T Consensus 369 l~~~~~~~h~v~~l~~~L~~~~~~r~------rdq~mwI~~qviss~i~~~al~D~~lev~kL~n--~lf~~dlv~~~~p 440 (1517)
T KOG1883|consen 369 LFQFLSFKHFVLVLHNKLKRCKLTRG------RDQLMWILLQVISSSIQKNALDDAFLEVVKLFN--LLFPGDLVWMGAP 440 (1517)
T ss_pred HHHHHhHHHHHHHHHHHHhhcCcccc------cchhheeeHHHhhhhhhhhhHHHHHHHHHHHHH--hhcCcceeeecCC
Confidence 99999999995 667766 8888 899999999999999999988651 11122121 2222111 246
Q ss_pred CCCCCcchhhhhhccccceEEEe-eccchHHhhcHHHhhh-----hhhHHHHHHHhhcccccccccccCccceeeeeeeh
Q 000403 538 DPNNPQSILLDFISSCQNLRIWS-LNTSTREYLNNEQLQK-----GKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVS 611 (1563)
Q Consensus 538 d~n~pq~~~~~f~~s~q~l~iw~-~n~~~~~~l~~~~~q~-----~k~~~eww~~~~kg~~~~d~~n~DD~~iaml~vls 611 (1563)
|.|+++.... ++.+| ||+ |+|+ +..|+-+++. .|.=-++.+|..+.+-+| +||+.++.+||.+
T Consensus 441 din~~~~~r~-la~~~----iwi~L~Kk--a~~Df~d~~~plnh~Lr~H~~fLqq~vr~~~~m----~n~~kia~l~niy 509 (1517)
T KOG1883|consen 441 DINKALFARF-LAAAC----IWIHLEKK--ACTDFADKMPPLNHTLRSHIKFLQQGVRNFDSM----SNDAKIALLCNIY 509 (1517)
T ss_pred CcCHHHHHHH-HHHhh----hhhhhhhh--hccchhhccCcccHHHHHHHHHHHHHHHhhhhc----cchHHHHHHHHHH
Confidence 7898999988 99999 999 6886 5555555443 343335566665555543 6999999999999
Q ss_pred --hc----ccchhhhHHHHhhhcCccccccCCCCCCCCccccccccccccchhhhhhhhHHHHHHHHHHHHH--hhhcCC
Q 000403 612 --YT----MAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMED--SIFGGQ 683 (1563)
Q Consensus 612 --sT----~a~P~~Dtvm~~l~~~~v~e~ipg~~~~pn~~i~a~~~~~PLpmslLDsLTvh~km~Li~qI~~--~lf~~~ 683 (1563)
+| +..|+| .+.++++|+|... +|. ++..++|.+.++|||+++||+||+|+||+|+||+.. +.|...
T Consensus 510 ~~~t~~~~~~~Pm~-~LLe~i~~~~t~r-i~~----lst~~~A~~~~t~lpv~~lDslt~~skmsli~~~~~~l~sf~tv 583 (1517)
T KOG1883|consen 510 RTSTNMEKFIVPMG-QLLESISSNGTKR-IPE----LSTKRMAVNSFTALPVEFLDSLTVHSKMSLIHQCFQPLRSFSTV 583 (1517)
T ss_pred hccccccccCCcHH-HHHHHHhcCCccc-cCC----CCcceeeecccchhhHHHHHHHHHHHHHHHHHhcccccceeEEE
Confidence 55 889998 8999999999988 663 577899999999999999999999999999999987 468999
Q ss_pred ccCChhHHHHHHHhhhcccchhhHhhhhhhhhcCchhhh-------------hcchhhHHHHHhhccccccccccCcchh
Q 000403 684 VVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLA-------------KVGVTPLVLEIVNYRLLPLYRYQGKTKT 750 (1563)
Q Consensus 684 ~vPSPAlVETYsRLLvyte~sL~~k~f~~lsQ~~psv~k-------------a~g~l~~LLEilSYRL~p~YRyq~ks~~ 750 (1563)
.+++++..||.+..+.+.++++..++++..+|++-++-- +++.++++.+++-||+..| .| .+.++
T Consensus 584 ~l~~aq~~~~va~~~~s~~~~~~~~~le~~arllv~~ei~sl~isg~~~~~~~~~~~~Flsqllptv~~~h-ay-~~l~t 661 (1517)
T KOG1883|consen 584 RLKSAQVKETVAKACESEDYEMAVALLETYARLLVYVEIESLGISGEHQNVQAKDQCYFLSQLLPTVFKHH-AY-SKLHT 661 (1517)
T ss_pred EecccccchhhhhccccchhhhhhcccchhhhhheeeeeeccccCchhhhhhhHHhhhHHHHHHHHHHHHH-HH-HHHHH
Confidence 999999999999999999999999999999998766521 6789999999999999763 46 66666
Q ss_pred HHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccccccCCCCcchhhHhHHHHHHHHHHHHHHhcccccchhhh
Q 000403 751 LMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVL 830 (1563)
Q Consensus 751 llhsL~~ii~~~~nq~q~h~llr~lEs~~LrLIlsl~sf~~~q~~~~~ps~~SEELNR~LIlTLARsiKitGiad~~~g~ 830 (1563)
++....+-..++++..+.|+++++.|.+.++++... . ++.|+-.+--|.|.--|.+|
T Consensus 662 l~~~~syr~hhiq~~~r~~ll~~l~~~~lvp~~~~~-g-----------------~h~ci~s~a~rliTalk~ae----- 718 (1517)
T KOG1883|consen 662 LVEMFSYRTHHIQNHYRVQLLSRLHELFLVPQTNWA-G-----------------LHLCIESTALRLITALKSAE----- 718 (1517)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhhHHHHhh-h-----------------hhhhHHHHHHHHHHHhcccc-----
Confidence 777777888888988889999999999999988322 2 23344444444443333332
Q ss_pred hHHHHHHHHHhhCCCCCchhhhccCcHHHHHHHhcccCCCCcchhhHHHHHHHHHHH-HHhcc--C----CCC--ChhhH
Q 000403 831 YLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQ-CTQLL--S----PSA--DPTYV 901 (1563)
Q Consensus 831 ~~k~~L~~Im~ntph~WpekTLr~FP~~L~e~f~~~~D~~~l~~q~~qql~~tV~ee-~r~~~--S----ms~--E~~~V 901 (1563)
+=+.++.||.-.+++.+ +.+.-+++....+=. .|-.+ . ++. +..++
T Consensus 719 ------------------------~~~q~~~ffs~k~pg~~-psa~seeLnR~~IlTlara~kvtggad~i~~vw~ktml 773 (1517)
T KOG1883|consen 719 ------------------------MQPQFARFFSDKVPGQV-PSAESEELNRMLILTLARAVKVTGGADDIQGVWCKTML 773 (1517)
T ss_pred ------------------------hhHhHhhhcccCCCCcC-cccccHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHH
Confidence 11223333332222211 111222222222111 11111 0 111 12334
Q ss_pred hhhhcccC---CCCCcchHHH-H--HHHhhCCCCCCChhhH----------HHHHhhcChhHHHHhhhhhhcceeeehhh
Q 000403 902 KTYLSHSF---PQHRQYLCAG-A--WILMQGHPENINSANL----------LRVLREFSPEEVTSNIYTMVDVLLHHIHV 965 (1563)
Q Consensus 902 ~~~i~hf~---p~~~~fLC~l-~--~ml~~~~~e~I~~~~l----------yrVLe~ispr~vta~i~~fvDyLv~e~~~ 965 (1563)
.++|+|.- |.+.+- |-= | +-++++ ++.+.+|+ ||.+..+|+|- ||+.+...
T Consensus 774 ~tIi~~t~h~W~ektls-~FP~~aL~a~~~q--~~~~~en~qql~~~V~ne~r~~tSmsnen---------~~V~~yl~- 840 (1517)
T KOG1883|consen 774 PTIINTTPHGWPEKTLS-CFPKWALDAIFAQ--NNSPAENTQQLKKDVENEYRMWTSMSNEN---------DIVIHYLE- 840 (1517)
T ss_pred HHHHhcCCCCCchhhhh-hCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHhcCCCCcc---------hhhhhhcc-
Confidence 45555321 222111 221 1 122442 34555552 44444444221 33333322
Q ss_pred ccccCCchhHHHHHHHhHhhhhhhh-cccc--------------------chhhhhhhhccCCCCCc-------------
Q 000403 966 ELQRGHSLQDLLFKACANISFFVLT-HELL--------------------PLDILLLALIDRDDDPH------------- 1011 (1563)
Q Consensus 966 elq~g~~~Q~lv~kcv~~LndmIWk-ynIV--------------------pLDRLLL~LalR~dEgn------------- 1011 (1563)
++ ... ...|.-.--.|+|. +||= +|=-+|++=+.-.++|.
T Consensus 841 ---~~--~p~-~~lCll~~~~m~~~teNIns~~yrVLe~isprelva~~~tlvDyLvad~~t~~~~e~~l~k~~~~la~m 914 (1517)
T KOG1883|consen 841 ---DR--DPP-LFLCLLFAYKMVDETENINSEFYRVLEKISPRELVAHGRTLVDYLVADAKTSDCGEKTLKKCAKALALM 914 (1517)
T ss_pred ---CC--Cch-hHHHHHHHHHhcccccccCHHHHHHHHhcCHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHHHH
Confidence 22 111 22344433344443 1211 11111222122222332
Q ss_pred -----hh---hHhhhhcCc----HHHHHH---HHHHHHcCCCCCccccccchh-hhhhHHHHhcc----CCCCCCCCc-c
Q 000403 1012 -----AL---RIVITLLDR----QELQQR---VKLYCMNRGPPEHWLYSGLFK-RVELQKALGNH----LSWKERYPT-F 1070 (1563)
Q Consensus 1012 -----~l---iIqlLLL~~----~EFqqR---V~~Fv~~~~spEHW~~s~~fh-rkfPEk~lg~~----ls~~~~lPv-Y 1070 (1563)
++ |..+.|+.+ +|=+=. ++.++. .||.=..=.||+ +.-||.++.+. +.....||= |
T Consensus 915 vwkf~vl~lDrllL~Limr~~~~nda~vc~~Ia~~lLl---tpdf~~RI~~yck~nsPeHwl~~~~~k~~~yhka~pe~~ 991 (1517)
T KOG1883|consen 915 VWKFNVLTLDRLLLCLIMRPHEGNDAQVCIQIAQLLLL---TPDFRNRIRWYCKQNSPEHWLTEWIKKHVKYHKAYPEKE 991 (1517)
T ss_pred HHhhhhhhHHHHHHHHhcccccCCcchhHHHHHHHHhc---CHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcchHH
Confidence 11 112224444 333322 233333 335444444775 77888665443 222233444 4
Q ss_pred hhhHHhhh-------cCc-hhHHHHHHHhcCchhhHHHHHHHhccccccCCcchhhhhHhHHhhhccCchHHHH-HHHhh
Q 000403 1071 FDDIAARL-------LPV-IPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIV-RILNV 1141 (1563)
Q Consensus 1071 FgNvcLR~-------LPV-iDiVIhR~LE~~~~k~letLL~~~g~LYkYHd~PvTFvY~tLhYy~~~Lp~kLV~-~Ilg~ 1141 (1563)
+.-..-|. ||+ +|=|+-|+|-.- +.-+-++|+--+ +++.++--|-. .++=.
T Consensus 992 ~~e~~~qyd~~~~~~lPtyf~~v~~RlLPV~-d~vlhr~lE~~~-------------------~~k~~~~lL~hls~lyk 1051 (1517)
T KOG1883|consen 992 ACELARQYDSSSNVHLPTYFGNVCLRLLPVM-DQVLHRFLELQG-------------------VEKLLPQLLDHLSMLYK 1051 (1517)
T ss_pred HHHHHHhcCCccccCCccHHHHHHHHHhccH-HHHHHHHHHHhh-------------------HHHHHHHHHHHHHHHHh
Confidence 44455555 676 688888887431 222222222211 11111111111 11112
Q ss_pred cccCCCCCCcchhhhccCCCCCCCCChHHHHHHH------HHHHhccccccccCCCCCCccccccCCCCCCCCCCCCCCC
Q 000403 1142 FDLSKIPFSESFPQHISSSNPVMCPPLDYFATLL------LGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGP 1215 (1563)
Q Consensus 1142 Ld~~r~plSEsF~~y~~~~~~~~~P~~~Yy~~Ll------~RLvnnvlp~~~~~~~~~~~~~~s~~~~~~~~p~~s~~~p 1215 (1563)
+.+.++ + |.- | .+.||-.-| +.||-++.--+++.+-| ++ | .|+.. |+|.
T Consensus 1052 fH~~pi--t--fly-----n-----tl~y~~~hL~~~p~kk~lv~a~~~~lsei~lS----E~---f--~k~~~--q~~a 1106 (1517)
T KOG1883|consen 1052 FHDRPI--T--FLY-----N-----TLHYYEHHLRDRPLKKKLVLAIATQLSEIRLS----EA---F--EKFNH--QKGA 1106 (1517)
T ss_pred cCCCce--e--hhH-----H-----HHHHHHhhhhcCcchhhHHHHHhhhhhhCccc----hh---H--HHHhc--cCCC
Confidence 222222 1 211 0 144444322 22343343333333211 11 1 12222 3445
Q ss_pred CCCCCCCcccccCCCCcchhhhhhhcceeecccCCCCHHH-HHHHHHHhhhccCccccccCCCCCCCCCCCCCCCCCCCC
Q 000403 1216 SNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQ-IVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTS 1294 (1563)
Q Consensus 1216 ~~~s~~DwrF~EfpnPga~al~vL~tacIELLsLPvsp~~-Vv~aLvdvvv~~~~~l~q~~~~~~~~~~~~~~~~~~Pts 1294 (1563)
|...+.|. |.+ +.. -.+.-|+-|.+|.- -++.= .+.-|.. |.|..--.-|--..+|.+
T Consensus 1107 p~~pel~y-~~s---------Li~--rLvdt~~~~l~~~f~ncdwR----~~e~~n~-----~a~al~~~cvelma~~~s 1165 (1517)
T KOG1883|consen 1107 PWSPELDY-YMS---------LID--RLVDTLDGKLTPPFVNCDWR----FNEFPNP-----GAHALYVTCVELMALPVS 1165 (1517)
T ss_pred CCCCcHHH-HHH---------HHH--HHHhhcCCCCCCCCcccccc----cccCCCc-----cccccccchhhhcCCCCC
Confidence 55444443 111 111 11222333333210 00000 0000000 001000001111122332
Q ss_pred CCCCCCCCCCCCCCCCCccCcccccccccccccccchhhHHHHHHHHHHhcCChhHHHHHHHHHHHHhccCccccCCCCC
Q 000403 1295 PSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRS 1374 (1563)
Q Consensus 1295 ps~~~~~~~~~~~~~~~~~giN~~~~~~~~~~~~~~~s~l~INAiGLLLaaLP~~f~~~ly~ei~~vik~~w~l~d~k~s 1374 (1563)
|+ +-...+||. + -.++..--.--+|+||+||+++|||++||.+||+|++.||.+.-.+.... .
T Consensus 1166 gp------------~~asalinv---~-~~~q~~~p~~~~~~na~~l~itaLP~~y~~~l~d~lv~vivnp~~t~~t~-~ 1228 (1517)
T KOG1883|consen 1166 GP------------TVASALINV---M-QMKQHARPFNQLIVNATGLLITALPEPYWNALHDRLVAVIVNPQSTGETA-N 1228 (1517)
T ss_pred cH------------hHHHHHHHH---H-hhCCCCCchhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHcCccccchhh-c
Confidence 22 111122331 1 11111111124799999999999999999999999999999843222111 1
Q ss_pred cccccccccccccCCcccccccCcchhHHHH-HHHHHHHhcCChhhhhhHHHHH-hhcCc-cchHHHHHHHHHHHhcchh
Q 000403 1375 LGELDSAVGYALLDPTWAAQDNTSTAIGNIV-ALLHSFFSNLPQEWLEGTHVII-KHLRP-ITSVAMLRIVFRIMGPLLP 1451 (1563)
Q Consensus 1375 ~~elds~~~y~l~d~t~a~q~~t~t~~~~il-AL~Ha~~~h~~~~~L~~~~~~i-~~LrP-v~Te~qL~~~~rLvGP~L~ 1451 (1563)
.+ |+|.+||+.-.+...++...++++ |++|++|+|++++.|+.++++. +++.| |+||+||+|+||++||||+
T Consensus 1229 ~g-----f~~~~fd~~~~s~l~~~ps~a~Tl~a~s~s~~lh~si~~lsf~sr~yt~~ll~cvkte~~llyl~~L~~pfl~ 1303 (1517)
T KOG1883|consen 1229 LG-----FEFILFDFYEESLLLNEPSRARTLNAISHSVWLHCSISLLSFFSREYTERLLPCVKTEKQLLYLLHLVGPFLQ 1303 (1517)
T ss_pred CC-----CceeeccccchhccccCCccchhhHHHHhHHHhhcchHHHHhhhHHhHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 12 788999999999999999999999 9999999999999999999996 99999 9999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCccchhhhhhhhhhcee-eEEeccCCCCCCCCCCchhhhhhhhHhhhh
Q 000403 1452 RLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHV-VHYEGQGGPVQASSKPRPEVLVLTGRAAES 1530 (1563)
Q Consensus 1452 R~~~eR~~~~k~l~lll~~L~~vVdK~sq~~~~vels~iD~ICDFLyHI-YMFvG~g~~~~d~~K~~vE~~~~~~~iI~~ 1530 (1563)
|++.|++|++.+++.++|.++..+|+.. |++.|||+||||+||| |+|+| |.+|+.+| +++.+
T Consensus 1304 r~qle~~r~~~e~~~~l~d~l~s~~e~~-----v~l~ymdpicd~~yn~ky~~~G------divkn~~~------a~f~n 1366 (1517)
T KOG1883|consen 1304 RKQLESQRENFEIVVLLYDKLGSVDEEG-----VELVYMDPICDFLYNCKYFFAG------DIVKNTAE------AIFAN 1366 (1517)
T ss_pred HHHHHhhhhhhhhHHHHHHHhhhhhhcC-----CceeecchHHHHHhhhhhhhhh------HHHHHHHH------HHHHc
Confidence 9999999999999999999999988876 5999999999999999 99999 99999999 99999
Q ss_pred CCHhHHHHhccc
Q 000403 1531 LRPEVQHLLSHL 1542 (1563)
Q Consensus 1531 LrP~LQ~~LrHL 1542 (1563)
|+|.+|.|||++
T Consensus 1367 Lp~~l~drlrfi 1378 (1517)
T KOG1883|consen 1367 LPPKLRDRLRFI 1378 (1517)
T ss_pred CCHHHHhhhhhh
Confidence 999999999965
No 4
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=32.07 E-value=38 Score=25.92 Aligned_cols=18 Identities=22% Similarity=0.556 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHhhcCCC
Q 000403 381 DWERAMRCIRHAIRATPS 398 (1563)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~ 398 (1563)
+|++|++|++.|++-.|.
T Consensus 16 ~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 16 NYEEAIEYFEKALELDPN 33 (34)
T ss_dssp -HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 799999999999998874
No 5
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=30.43 E-value=27 Score=41.62 Aligned_cols=52 Identities=29% Similarity=0.422 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCC------------CcccchHHHhhccccccccCCChhHHHH---HHHHHh
Q 000403 253 DKALIEWLHSCLDVIWLLVDED------------RCRVPFYELLRTGLQFIENIPDDEALFT---LILEIH 308 (1563)
Q Consensus 253 ~~~~~~w~~~c~~vi~~l~~e~------------~~rvpfy~l~~~~~q~~e~~pddeal~~---l~~e~h 308 (1563)
.++|..||+.|+-- ..|. .+--|.|.++++=.+-++++||.|++-+ +...||
T Consensus 244 V~aLn~WL~~~l~~----~~~~~~~~~~~~sp~~~~aPpIf~lC~~W~~aLd~lp~k~v~~AIk~f~~~v~ 310 (312)
T PF04782_consen 244 VKALNGWLKLCLMQ----EPEETSDGRPPSSPRRSGAPPIFVLCNDWSQALDRLPDKEVSEAIKSFAAVVH 310 (312)
T ss_pred HHHHHHHHHHhccc----cccccccCCCCCCccccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence 57899999999833 2222 2345889999999999999999987654 344444
No 6
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=24.86 E-value=55 Score=33.50 Aligned_cols=41 Identities=29% Similarity=0.616 Sum_probs=32.0
Q ss_pred cCCChhHHhHHHHHHHhhhhhhcCCCCcch----hHHHHHHHHhhhcc
Q 000403 88 QFPDQDQLRSVTESVLISMVVQCCSHVPRA----EFILFALRSLCSIG 131 (1563)
Q Consensus 88 q~~~~~ql~~~te~~~~~~~~qc~~h~p~~----~fll~~~~~l~~~~ 131 (1563)
....||++|...- |.++++||+.-++. ||-+||+|-||.-.
T Consensus 17 ~~~~Qd~vr~~~G---i~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 17 NKEVQDLVRELGG---IPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred CHHHHHHHHHcCC---hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 3456788776554 89999999987775 67799999999744
No 7
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=24.73 E-value=64 Score=25.09 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHHhhcCCC
Q 000403 381 DWERAMRCIRHAIRATPS 398 (1563)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~ 398 (1563)
+|++|+.|.+.||+..|.
T Consensus 16 ~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 16 DYEEALEYYQRALELDPD 33 (34)
T ss_dssp -HHHHHHHHHHHHHHSTT
T ss_pred CchHHHHHHHHHHHHCcC
Confidence 799999999999998885
No 8
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=21.48 E-value=86 Score=21.37 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=15.4
Q ss_pred cHHHHHHHHHHHhhcCCC
Q 000403 381 DWERAMRCIRHAIRATPS 398 (1563)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~ 398 (1563)
++++|..|++.+++..|+
T Consensus 16 ~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 16 DYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHccCCC
Confidence 589999999999987764
No 9
>PHA02992 hypothetical protein; Provisional
Probab=19.99 E-value=1.5e+02 Score=39.15 Aligned_cols=90 Identities=20% Similarity=0.304 Sum_probs=51.5
Q ss_pred HhHhhhhhhhccccchhhhhh----------hhccCCCCCchhhHhhhhcCcHHH-HHHHHHHHHcC---CCCCcccccc
Q 000403 981 CANISFFVLTHELLPLDILLL----------ALIDRDDDPHALRIVITLLDRQEL-QQRVKLYCMNR---GPPEHWLYSG 1046 (1563)
Q Consensus 981 v~~LndmIWkynIVpLDRLLL----------~LalR~dEgn~liIqlLLL~~~EF-qqRV~~Fv~~~---~spEHW~~s~ 1046 (1563)
.+.|.+|..||-|+|.+-=++ .|....+...+++..+. |...-+ ..+|++|+-++ +.-|+|..
T Consensus 178 ~~FL~~Mlyk~GI~P~N~Gi~~~~s~~~iieiL~~~~~~~D~~~fLd~-L~~~~L~~d~~K~~ii~~I~~G~vd~y~~-- 254 (728)
T PHA02992 178 SDFLTDMLYKYGIVPNNDGILDEISIELIIEILQSIKRPRDAIRFLDM-LPKEQLTDDKLKNYIINKIKNGKIDQYIP-- 254 (728)
T ss_pred HHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHhcCCchHHHHHHHh-cCHHhcCchHHHHHHHHHHHcCcchHHHH--
Confidence 468999999999999876555 12222222223333222 122222 13666776663 44455543
Q ss_pred chhhhhhHHHHhccC-CCCCCCCcchhhHHhhh
Q 000403 1047 LFKRVELQKALGNHL-SWKERYPTFFDDIAARL 1078 (1563)
Q Consensus 1047 ~fhrkfPEk~lg~~l-s~~~~lPvYFgNvcLR~ 1078 (1563)
|-+++|..+. ...-+.|+||++.+..+
T Consensus 255 -----YA~eYL~d~~~dlGvYanIFFd~~~~~l 282 (728)
T PHA02992 255 -----YAEEFLVDRKEDLGVYANIFFDDVAIDL 282 (728)
T ss_pred -----HHHHHHHhhHHhhcceeeeeecchhcch
Confidence 6667766653 34568899999876444
No 10
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=18.31 E-value=1.6e+02 Score=30.95 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=48.9
Q ss_pred hHHHhhccccccccCCChh--HHHHHHHHHhhchhhHHHHHhhhccccCCCCccccccccccCCcccccccccccccccc
Q 000403 280 FYELLRTGLQFIENIPDDE--ALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPIT 357 (1563)
Q Consensus 280 fy~l~~~~~q~~e~~pdde--al~~l~~e~hrrrd~~~~hm~~~dqhlhcptf~t~~~~~~~~~~~~~~~~~~lr~s~~t 357 (1563)
|-++|.+. |+|++. .+.+ +-..+++.|+..|.++-.++. .++..
T Consensus 12 F~~ll~~~-----~~~~~~r~~l~~--~~~ekKw~li~~~~~~~~~~~---------------------------~~~~~ 57 (187)
T PF06371_consen 12 FEELLEEL-----NLPEEKRKELRN--LPPEKKWQLIQQHRQKQAKHS---------------------------SSSSK 57 (187)
T ss_dssp HHHHHHHT-----T--HHHHHHHHT--S-HHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHhc-----CCCHHHHHHHHC--CCHHHHHHHHHhHHHhccccc---------------------------hhhhh
Confidence 55666654 676653 2333 467788999999998877766 22333
Q ss_pred CCcccCCCcchhhhhhhccCCCccHHHHHHHHHHHhhcCCChhhhhhhh
Q 000403 358 YPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVL 406 (1563)
Q Consensus 358 y~~~~ge~l~ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1563)
+...-.....=|.....+..++.+. +.++.|+-+|||.| .+|.+..+
T Consensus 58 ~~~~~~~~~~p~~~i~~L~~~~~~~-~~L~~L~v~Lrt~~-~~Wv~~Fl 104 (187)
T PF06371_consen 58 SKSKASAKSSPEWYIKKLKSRPSTS-KILKSLRVSLRTNP-ISWVQEFL 104 (187)
T ss_dssp -------CHHHHHHHHHHTTT--HH-HHHHHHHHHHHHS--HHHHHHH-
T ss_pred hhhhhhhhhhHHHHHHHHHccCccH-HHHHHHHHHhccCC-chHHHHhc
Confidence 3333334444456677777777776 89999999999965 57988765
Done!