Query 000403
Match_columns 1563
No_of_seqs 60 out of 62
Neff 3.2
Searched_HMMs 13730
Date Tue Mar 26 16:10:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000403.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_183-186//hhsearch_scop/000403hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dvpa1 a.118.9.2 (A:1-145) Hr 14.9 17 0.0013 11.5 0.1 13 723-735 22-34 (145)
2 d1v8da_ c.140.1.1 (A:) Hypothe 4.5 69 0.0051 7.5 -0.3 14 104-117 66-79 (193)
3 d1ey1a_ a.79.1.1 (A:) Antiterm 4.3 86 0.0062 6.9 2.8 102 1133-1266 11-113 (139)
4 d1tuza_ a.39.1.7 (A:) Diacylgl 4.1 90 0.0066 6.8 1.4 13 469-481 92-104 (118)
5 d1qhda1 a.115.1.2 (A:1-148,A:3 4.0 92 0.0067 6.7 0.1 56 509-564 66-133 (213)
6 d2pyqa1 a.279.1.1 (A:1-113) Un 4.0 94 0.0069 6.6 0.7 12 273-284 91-102 (113)
7 d1om2a_ a.23.4.1 (A:) Mitochon 3.9 95 0.007 6.6 1.8 12 812-823 41-52 (95)
8 d1g7oa1 a.45.1.1 (A:76-215) Gl 3.8 99 0.0072 6.5 5.5 73 74-149 50-129 (140)
9 d1bu2a2 a.74.1.1 (A:149-250) V 3.2 1.2E+02 0.0089 5.9 2.0 20 1345-1364 16-35 (102)
10 d1bm9a_ a.4.5.7 (A:) Replicati 3.0 1.3E+02 0.0095 5.7 4.6 41 1082-1124 17-60 (120)
No 1
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=14.89 E-value=17 Score=11.50 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=6.1
Q ss_pred HCCHHHHHHHHHH
Q ss_conf 0260358999863
Q 000403 723 KVGVTPLVLEIVN 735 (1563)
Q Consensus 723 a~g~l~~LLEilS 735 (1563)
.|+...-++|+++
T Consensus 22 dw~~il~icD~I~ 34 (145)
T d1dvpa1 22 DWPSILLICDEIN 34 (145)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999995
No 2
>d1v8da_ c.140.1.1 (A:) Hypothetical protein TT1679 {Thermus thermophilus [TaxId: 274]}
Probab=4.52 E-value=69 Score=7.52 Aligned_cols=14 Identities=43% Similarity=0.878 Sum_probs=6.3
Q ss_pred HHHHHHCCCCCCCH
Q ss_conf 65432237888612
Q 000403 104 ISMVVQCCSHVPRA 117 (1563)
Q Consensus 104 ~~~~~qc~~h~p~~ 117 (1563)
|.|.+|||-|--||
T Consensus 66 i~lA~Q~CEHlNRA 79 (193)
T d1v8da_ 66 VHVAVQACEHLNRA 79 (193)
T ss_dssp CEEEEECCGGGTTC
T ss_pred EEEEEECHHHHHHH
T ss_conf 08987345565788
No 3
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]}
Probab=4.27 E-value=86 Score=6.93 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=60.4
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79999983114689888930001003999988999578999999998600444446898888665566788999998778
Q 000403 1133 KLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQ 1212 (1563)
Q Consensus 1133 kLV~~Ilg~Ld~~r~plSEsF~~y~~~~~~~~~P~~~Yy~~LI~RLvnnvlp~~~~~~~~~~~~~~s~~~~~~~~p~~s~ 1212 (1563)
.++..++-+.+...-.+.+...++....+ .-..|..|+..|+.+...+. ...|....
T Consensus 11 ~~a~q~Ly~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~l~~gv~~~~-----------~~id~~I~----------- 67 (139)
T d1ey1a_ 11 ECAVQALYSWQLSQNDIADVEYQFLAEQD-VKDVDVLYFRELLAGVATNT-----------AYLDGLMK----------- 67 (139)
T ss_dssp HHHHHHHHHHHHHCCCSHHHHHHHHHTTT-SSSCCCHHHHHHHHHHHHHH-----------HHHHHHHT-----------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-----------
T ss_conf 99999999998369999999999988345-43145899999999999837-----------88999999-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEECCCCC-CCHHHHHHHHHHHHHC
Q ss_conf 99998888894212379973036665300100101588-8978999888876440
Q 000403 1213 SGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLP-VSASQIVSSLVQIVVN 1266 (1563)
Q Consensus 1213 ~~p~~~s~~DwrF~EfpnPga~al~vL~tacIELLsLP-vsp~~Vv~aLIdvvv~ 1266 (1563)
.+ .+|.+...+ +--.+++ ..++.||+-++ +|+..+++.-|+++-+
T Consensus 68 ----~~--l~~~~~r~~-~~~~~IL--r~a~~El~~~~~~p~~viInE~Velak~ 113 (139)
T d1ey1a_ 68 ----PY--LSRLLEELG-QVEKAVL--RIALYELSKRSDVPYKVAINEAIELAKS 113 (139)
T ss_dssp ----TC--CCSCTTTSC-HHHHHHH--HHHHHHHHSCSSCCSHHHHHHHHHHTTT
T ss_pred ----HH--HHHHHHHCC-HHHHHHH--HHHHHHHHHCCCCCCEEHHHHHHHHHHH
T ss_conf ----98--886487537-6789999--9999999971377761259999999999
No 4
>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.09 E-value=90 Score=6.77 Aligned_cols=13 Identities=8% Similarity=-0.016 Sum_probs=5.6
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 2666799899999
Q 000403 469 GCIDFVDFVDKLV 481 (1563)
Q Consensus 469 ~~~df~~~i~kL~ 481 (1563)
|.|||.+||..|+
T Consensus 92 g~I~f~efv~~LS 104 (118)
T d1tuza_ 92 DVVCLNDVSCYFS 104 (118)
T ss_dssp CCEEHHHHHHHHH
T ss_pred CEEEHHHHHHHHH
T ss_conf 6461999999999
No 5
>d1qhda1 a.115.1.2 (A:1-148,A:333-397) vp6, the major capsid protein of group A rotavirus {Bovine rotavirus [TaxId: 10927]}
Probab=4.03 E-value=92 Score=6.72 Aligned_cols=56 Identities=32% Similarity=0.283 Sum_probs=34.8
Q ss_pred HHHHHHHCCCCCCCHHHHHHHC--------CCCCCCCC--CCC--CCCHHHHHHCCCCCEEEEEECCC
Q ss_conf 7785410143000001344400--------24457899--999--72112232302452479864032
Q 000403 509 LVMGALNSDSRKVETTRKILSF--------HREDRCTD--PNN--PQSILLDFISSCQNLRIWSLNTS 564 (1563)
Q Consensus 509 ~v~~~~~~~~~~v~t~~~ilsf--------~~~d~~~d--~n~--pq~~~~~f~~s~q~l~iw~~n~~ 564 (1563)
+-+++|+-|.--||++|-++-| |+.+-+-+ -|. |||--|--.+++.--||.+=|.+
T Consensus 66 LGTTLLNLD~NYVe~aR~~Idy~~~Fid~VC~DEivREsqRNG~~PQS~~L~~Ls~~kfk~Inf~NsS 133 (213)
T d1qhda1 66 LGTTLLNLDANYVETARNTIDYFVDFVDNVCMDEMVRESQRNGIAPQSDSLIKLSGIKFKRINFDNSS 133 (213)
T ss_dssp CCCCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTTTTSCCSHHHHHHTSGGGGGGCCCCCS
T ss_pred CCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCEEEEECCCCH
T ss_conf 01211146268888888899999999998737999999873688999878999853542476447806
No 6
>d2pyqa1 a.279.1.1 (A:1-113) Uncharacterized protein Jann4075 {Jannaschia sp. ccs1 [TaxId: 290400]}
Probab=3.95 E-value=94 Score=6.65 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=4.9
Q ss_pred CCCCCCCHHHHH
Q ss_conf 997655169986
Q 000403 273 EDRCRVPFYELL 284 (1563)
Q Consensus 273 e~~~rvpfy~l~ 284 (1563)
-+|+|+.||-||
T Consensus 91 r~K~R~~~YYll 102 (113)
T d2pyqa1 91 RNKYRAVVYYML 102 (113)
T ss_dssp SCCBHHHHHHHH
T ss_pred CCCCEEEHHHHH
T ss_conf 775302206787
No 7
>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.91 E-value=95 Score=6.61 Aligned_cols=12 Identities=25% Similarity=0.072 Sum_probs=5.0
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999775254
Q 000403 812 IALAIIIKTRGI 823 (1563)
Q Consensus 812 lTLARsiKitGi 823 (1563)
.-|++++.+.|+
T Consensus 41 ~h~~nAi~Vc~q 52 (95)
T d1om2a_ 41 DHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999998278
No 8
>d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}
Probab=3.80 E-value=99 Score=6.51 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH---HHHH---CCCCCCCHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 86023212999860099946776777988765---4322---37888612479999-99864205434310178996544
Q 000403 74 RNEQFLIDFEQLQSQFPDQDQLRSVTESVLIS---MVVQ---CCSHVPRAEFILFA-LRSLCSIGYINWDTFLPSLLSSV 146 (1563)
Q Consensus 74 ~~~qf~~df~~l~~q~~~~~ql~~~te~~~~~---~~~q---c~~h~p~~~fll~~-~~~l~~~~~~~~d~~l~~~~~~~ 146 (1563)
|.|+++.||+++..+-+ |+-.--|..|-- ++.. +.+.---.|+++|. ||+|+..--|.|++=+-..+..+
T Consensus 50 kKe~~~g~f~~~l~~t~---~li~~l~~~L~~L~~ll~~~~~~~~~ls~DDi~lFp~LR~ltivkgi~~p~~v~~Y~~~~ 126 (140)
T d1g7oa1 50 KKEASAGNFADLLAHSD---GLIKNISDDLRALDKLIVKPNAVNGELSEDDIQLFPLLRNLTLVAGINWPSRVADYRDNM 126 (140)
T ss_dssp TTTTTCTHHHHHHHHHH---HHHHHHHHHHHHHHHHCSSSSCTTSSCCHHHHHHHHHHHHHHTSTTSCCCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHCCH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 66641179999987579---999999999999999982735558876699999999986457516787888899999999
Q ss_pred HHH
Q ss_conf 320
Q 000403 147 SSA 149 (1563)
Q Consensus 147 ~~~ 149 (1563)
|..
T Consensus 127 s~~ 129 (140)
T d1g7oa1 127 AKQ 129 (140)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 998
No 9
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=3.21 E-value=1.2e+02 Score=5.91 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=12.3
Q ss_pred CCCHHHHHHHHHHHHHHHCC
Q ss_conf 19935799999999998605
Q 000403 1345 QLPPDFHMQLYMEASRIIKE 1364 (1563)
Q Consensus 1345 aLP~~f~~~ly~ei~~vik~ 1364 (1563)
..|++||-++|+.....|+.
T Consensus 16 kipe~~wpql~e~~s~tick 35 (102)
T d1bu2a2 16 KIPEDLWPQLYEAASTTICK 35 (102)
T ss_dssp TCCTTSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 69677849999998999999
No 10
>d1bm9a_ a.4.5.7 (A:) Replication terminator protein (RTP) {Bacillus subtilis [TaxId: 1423]}
Probab=3.02 E-value=1.3e+02 Score=5.71 Aligned_cols=41 Identities=12% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 5699999870583---114999999720000038764044667698
Q 000403 1082 IPLIVYRLIENDA---MDSADRVLATYSSFLAYYPLRFSFVRDILA 1124 (1563)
Q Consensus 1082 iDiVIhR~LE~~~---~k~letLL~~lg~LYkYHd~PvTFlY~tLh 1124 (1563)
+-+++.+.+|++. .++++-|=+-|+| |-||| |-|=+|.+||
T Consensus 17 lKlYlit~~eq~r~YG~q~L~~Lr~eFk~-~Gy~P-~hsEiYraLH 60 (120)
T d1bm9a_ 17 LKLYMITMTEQERLYGLKLLEVLRSEFKE-IGFKP-NHTEVYRSLH 60 (120)
T ss_dssp HHHHHHHHHHTTCCBSTTHHHHHHHHHTT-TTCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-CCCCC-CHHHHHHHHH
T ss_conf 87654110350211279999999998785-38899-7789999999
Done!