Query 000404
Match_columns 1562
No_of_seqs 482 out of 1631
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 07:24:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1512 PHD Zn-finger protein 98.7 3E-09 6.5E-14 118.5 1.2 88 812-915 259-361 (381)
2 KOG1244 Predicted transcriptio 98.7 5.3E-09 1.2E-13 116.1 1.5 91 812-917 225-331 (336)
3 KOG1244 Predicted transcriptio 98.7 4.8E-09 1E-13 116.5 1.0 80 740-854 244-329 (336)
4 PF13508 Acetyltransf_7: Acety 98.6 1.8E-07 3.9E-12 84.6 9.6 77 1007-1088 3-79 (79)
5 KOG0956 PHD finger protein AF1 98.6 2.1E-08 4.5E-13 121.0 4.0 112 813-925 7-188 (900)
6 PF13673 Acetyltransf_10: Acet 98.6 2.2E-07 4.8E-12 87.5 9.5 74 1007-1086 44-117 (117)
7 PF00583 Acetyltransf_1: Acety 98.6 1.8E-07 3.9E-12 83.3 8.4 74 1013-1087 2-83 (83)
8 PRK10314 putative acyltransfer 98.5 4.7E-07 1E-11 93.0 9.7 80 1011-1091 52-134 (153)
9 KOG4443 Putative transcription 98.5 3.7E-08 8E-13 119.2 0.7 120 743-898 36-182 (694)
10 KOG1512 PHD Zn-finger protein 98.5 5.4E-08 1.2E-12 108.8 1.7 77 740-851 277-357 (381)
11 PTZ00330 acetyltransferase; Pr 98.4 1.1E-06 2.3E-11 86.3 7.8 84 1008-1092 53-142 (147)
12 KOG4299 PHD Zn-finger protein 98.3 2.6E-07 5.5E-12 111.9 3.1 46 811-856 253-305 (613)
13 PRK03624 putative acetyltransf 98.2 2.6E-06 5.7E-11 81.3 7.6 82 1007-1090 45-129 (140)
14 PRK10146 aminoalkylphosphonic 98.2 4E-06 8.6E-11 82.0 8.5 80 1009-1089 49-136 (144)
15 PF13527 Acetyltransf_9: Acety 98.2 6.1E-06 1.3E-10 79.5 9.0 110 965-1089 11-127 (127)
16 KOG4443 Putative transcription 98.2 5.6E-07 1.2E-11 109.3 1.6 88 811-912 18-114 (694)
17 COG5141 PHD zinc finger-contai 98.1 8.3E-07 1.8E-11 104.7 2.3 93 806-898 188-337 (669)
18 PLN02706 glucosamine 6-phospha 98.1 1.1E-05 2.3E-10 80.3 8.8 74 1015-1089 63-142 (150)
19 cd02169 Citrate_lyase_ligase C 98.1 6.3E-06 1.4E-10 94.1 8.0 75 1010-1090 9-83 (297)
20 PRK09491 rimI ribosomal-protei 98.1 1.5E-05 3.3E-10 79.0 9.3 84 1006-1091 39-125 (146)
21 TIGR01575 rimI ribosomal-prote 98.0 2E-05 4.4E-10 74.7 8.7 81 1009-1091 33-116 (131)
22 PRK07922 N-acetylglutamate syn 98.0 1.4E-05 3.1E-10 83.3 8.3 79 1009-1090 47-126 (169)
23 PRK07757 acetyltransferase; Pr 98.0 2E-05 4.4E-10 78.5 8.6 78 1011-1091 45-122 (152)
24 PRK10975 TDP-fucosamine acetyl 98.0 2.3E-05 4.9E-10 82.3 9.0 85 1004-1089 99-186 (194)
25 PLN02825 amino-acid N-acetyltr 98.0 2.1E-05 4.5E-10 95.7 9.5 83 1009-1093 409-492 (515)
26 TIGR01890 N-Ac-Glu-synth amino 97.9 2.4E-05 5.2E-10 92.6 9.2 81 1010-1092 325-406 (429)
27 COG1246 ArgA N-acetylglutamate 97.9 1.8E-05 3.8E-10 83.4 6.7 82 1010-1093 43-125 (153)
28 TIGR02382 wecD_rffC TDP-D-fuco 97.9 4.5E-05 9.7E-10 80.2 9.0 78 1011-1089 103-183 (191)
29 PRK05279 N-acetylglutamate syn 97.9 3.7E-05 8.1E-10 91.1 9.3 81 1010-1092 337-418 (441)
30 TIGR03827 GNAT_ablB putative b 97.9 3.6E-05 7.8E-10 85.4 8.4 83 1006-1089 157-243 (266)
31 TIGR00124 cit_ly_ligase [citra 97.8 5E-05 1.1E-09 88.1 8.8 86 1002-1093 26-111 (332)
32 PRK12308 bifunctional arginino 97.8 4.8E-05 1E-09 94.0 8.9 80 1010-1092 506-585 (614)
33 PHA00673 acetyltransferase dom 97.7 0.00014 2.9E-09 76.9 9.2 83 1006-1089 54-144 (154)
34 PRK10140 putative acetyltransf 97.7 0.00015 3.3E-09 72.0 9.1 85 1007-1093 51-143 (162)
35 KOG0383 Predicted helicase [Ge 97.7 1.7E-05 3.7E-10 98.8 2.6 50 807-856 43-94 (696)
36 KOG0955 PHD finger protein BR1 97.7 2.4E-05 5.3E-10 100.6 4.1 58 808-865 216-286 (1051)
37 PRK09831 putative acyltransfer 97.7 0.0001 2.2E-09 74.0 7.1 74 1009-1093 55-128 (147)
38 TIGR03448 mycothiol_MshD mycot 97.6 0.00015 3.2E-09 80.0 8.6 85 1005-1090 198-287 (292)
39 TIGR03448 mycothiol_MshD mycot 97.6 0.00017 3.8E-09 79.5 9.1 82 1007-1091 46-128 (292)
40 KOG0954 PHD finger protein [Ge 97.6 2.4E-05 5.1E-10 96.3 1.9 55 809-863 269-334 (893)
41 PRK13688 hypothetical protein; 97.6 0.00022 4.8E-09 74.7 8.7 75 1012-1092 50-134 (156)
42 PF00628 PHD: PHD-finger; Int 97.6 1.9E-05 4E-10 67.6 0.4 42 813-854 1-49 (51)
43 KOG0825 PHD Zn-finger protein 97.6 2.8E-05 6.2E-10 95.8 1.7 43 812-854 216-264 (1134)
44 KOG4299 PHD Zn-finger protein 97.5 4.4E-05 9.6E-10 93.2 3.2 44 811-854 47-93 (613)
45 smart00249 PHD PHD zinc finger 97.5 6.6E-05 1.4E-09 61.2 3.2 41 813-853 1-47 (47)
46 PF13420 Acetyltransf_4: Acety 97.5 0.0005 1.1E-08 68.4 9.9 75 1014-1090 58-138 (155)
47 TIGR02406 ectoine_EctA L-2,4-d 97.5 0.00024 5.2E-09 73.1 7.7 80 1008-1088 40-125 (157)
48 KOG1473 Nucleosome remodeling 97.5 2.5E-05 5.5E-10 99.1 0.3 104 808-911 341-474 (1414)
49 COG0456 RimI Acetyltransferase 97.5 0.00034 7.4E-09 70.6 7.9 76 1017-1093 72-156 (177)
50 cd04301 NAT_SF N-Acyltransfera 97.5 0.00043 9.4E-09 56.1 6.9 61 1010-1070 2-64 (65)
51 TIGR03103 trio_acet_GNAT GNAT- 97.4 0.00048 1E-08 84.6 9.2 85 1005-1090 121-216 (547)
52 PRK01346 hypothetical protein; 97.4 0.00053 1.2E-08 80.0 8.9 82 1009-1093 49-138 (411)
53 KOG3396 Glucosamine-phosphate 97.3 0.00062 1.3E-08 71.0 7.1 114 957-1090 21-143 (150)
54 PF15446 zf-PHD-like: PHD/FYVE 97.2 0.00015 3.3E-09 77.3 2.5 84 814-898 2-143 (175)
55 KOG1973 Chromatin remodeling p 97.2 0.00012 2.6E-09 83.0 1.8 43 812-855 222-267 (274)
56 COG5034 TNG2 Chromatin remodel 97.2 0.00019 4.1E-09 80.5 3.2 45 809-854 219-268 (271)
57 PRK10514 putative acetyltransf 97.2 0.0015 3.2E-08 64.6 8.2 75 1011-1093 54-128 (145)
58 PRK10562 putative acetyltransf 97.1 0.0013 2.9E-08 65.6 7.5 75 1009-1090 50-124 (145)
59 PRK15130 spermidine N1-acetylt 97.1 0.0024 5.3E-08 66.2 9.4 82 1008-1091 58-145 (186)
60 PHA01807 hypothetical protein 97.1 0.0013 2.7E-08 69.2 7.4 76 1007-1082 53-135 (153)
61 COG2153 ElaA Predicted acyltra 97.1 0.0014 3.1E-08 69.1 7.6 85 1007-1092 50-137 (155)
62 PF08445 FR47: FR47-like prote 97.1 0.0016 3.5E-08 61.9 7.3 72 1017-1090 8-81 (86)
63 TIGR01686 FkbH FkbH-like domai 97.1 0.0015 3.1E-08 74.9 8.2 81 1006-1088 230-318 (320)
64 KOG4323 Polycomb-like PHD Zn-f 97.0 0.00024 5.3E-09 85.3 1.8 103 812-914 84-222 (464)
65 PF00628 PHD: PHD-finger; Int 97.0 0.00023 5.1E-09 60.9 1.2 40 875-915 10-49 (51)
66 KOG0383 Predicted helicase [Ge 97.0 0.00033 7.1E-09 87.8 2.6 80 828-914 1-91 (696)
67 COG3393 Predicted acetyltransf 97.0 0.0017 3.7E-08 73.7 7.7 82 1007-1089 177-260 (268)
68 KOG0825 PHD Zn-finger protein 96.9 0.0003 6.4E-09 87.3 1.3 41 876-919 227-268 (1134)
69 PF13523 Acetyltransf_8: Acety 96.9 0.0058 1.3E-07 61.3 10.2 87 1003-1090 44-140 (152)
70 TIGR03585 PseH pseudaminic aci 96.9 0.0047 1E-07 61.4 9.5 81 1010-1093 54-140 (156)
71 KOG3139 N-acetyltransferase [G 96.9 0.003 6.4E-08 67.6 8.2 87 1011-1098 59-153 (165)
72 TIGR01211 ELP3 histone acetylt 96.8 0.0022 4.8E-08 78.7 7.7 76 1014-1090 421-515 (522)
73 PF13302 Acetyltransf_3: Acety 96.7 0.0095 2.1E-07 57.9 9.3 72 1014-1087 65-142 (142)
74 PRK10809 ribosomal-protein-S5- 96.5 0.011 2.4E-07 61.9 8.7 82 1007-1090 77-165 (194)
75 smart00249 PHD PHD zinc finger 96.2 0.0036 7.9E-08 51.0 2.5 35 876-911 11-45 (47)
76 KOG1973 Chromatin remodeling p 96.1 0.0027 5.8E-08 72.3 2.3 35 876-915 229-266 (274)
77 PRK10151 ribosomal-protein-L7/ 96.0 0.031 6.7E-07 57.8 9.2 77 1013-1091 73-155 (179)
78 cd04718 BAH_plant_2 BAH, or Br 95.5 0.0074 1.6E-07 63.9 2.4 29 832-860 1-31 (148)
79 PF13718 GNAT_acetyltr_2: GNAT 95.2 0.022 4.7E-07 62.7 4.8 98 981-1104 65-191 (196)
80 KOG4323 Polycomb-like PHD Zn-f 94.9 0.016 3.4E-07 70.3 3.0 44 812-855 169-223 (464)
81 COG3153 Predicted acetyltransf 94.9 0.093 2E-06 56.9 8.3 100 1009-1117 48-152 (171)
82 KOG1245 Chromatin remodeling c 94.8 0.0066 1.4E-07 81.6 -0.8 45 811-855 1108-1157(1404)
83 KOG0957 PHD finger protein [Ge 94.7 0.015 3.2E-07 70.4 1.8 42 813-854 121-177 (707)
84 COG1247 Sortase and related ac 94.6 0.19 4.2E-06 54.4 9.6 110 1004-1118 49-167 (169)
85 PF13831 PHD_2: PHD-finger; PD 94.5 0.007 1.5E-07 50.4 -0.9 34 821-854 2-36 (36)
86 KOG2488 Acetyltransferase (GNA 94.3 0.074 1.6E-06 58.6 5.9 84 1006-1090 92-181 (202)
87 PF08444 Gly_acyl_tr_C: Aralky 94.3 0.071 1.5E-06 52.6 5.1 75 1011-1090 3-79 (89)
88 COG0454 WecD Histone acetyltra 94.2 0.048 1E-06 46.0 3.4 44 1037-1086 87-130 (156)
89 PF12746 GNAT_acetyltran: GNAT 94.0 0.23 4.9E-06 57.1 9.4 74 1014-1089 172-245 (265)
90 KOG3397 Acetyltransferases [Ge 93.8 0.096 2.1E-06 57.2 5.4 80 1014-1095 64-145 (225)
91 COG5034 TNG2 Chromatin remodel 93.5 0.037 8.1E-07 62.8 1.8 36 877-917 232-270 (271)
92 KOG0957 PHD finger protein [Ge 92.6 0.051 1.1E-06 65.9 1.4 42 812-853 545-595 (707)
93 KOG3138 Predicted N-acetyltran 91.8 0.18 3.8E-06 55.6 4.2 82 1031-1117 89-174 (187)
94 KOG3216 Diamine acetyltransfer 91.5 0.9 2E-05 49.1 8.9 90 1001-1091 48-146 (163)
95 COG1444 Predicted P-loop ATPas 90.0 0.31 6.7E-06 62.7 4.6 71 1033-1105 533-607 (758)
96 PF12568 DUF3749: Acetyltransf 89.2 1.9 4.2E-05 45.3 8.8 81 1005-1090 38-124 (128)
97 KOG1473 Nucleosome remodeling 89.1 0.14 3E-06 67.1 0.6 47 810-856 427-479 (1414)
98 cd04718 BAH_plant_2 BAH, or Br 89.1 0.21 4.6E-06 53.3 1.9 25 888-915 1-25 (148)
99 KOG3234 Acetyltransferase, (GN 88.9 0.31 6.8E-06 52.7 3.0 51 1037-1088 75-128 (173)
100 COG1670 RimL Acetyltransferase 88.8 1.8 3.9E-05 43.5 8.2 89 1003-1093 62-160 (187)
101 KOG4144 Arylalkylamine N-acety 88.3 0.29 6.4E-06 52.8 2.3 59 1032-1091 102-161 (190)
102 PF14542 Acetyltransf_CG: GCN5 87.5 1.7 3.7E-05 41.4 6.6 56 1011-1067 3-58 (78)
103 PF02178 AT_hook: AT hook moti 87.4 0.23 5.1E-06 33.8 0.6 11 400-410 1-11 (13)
104 KOG1245 Chromatin remodeling c 86.9 0.23 4.9E-06 67.6 0.7 47 876-925 1120-1166(1404)
105 KOG0955 PHD finger protein BR1 86.2 0.36 7.8E-06 63.9 1.9 34 876-914 233-266 (1051)
106 KOG0956 PHD finger protein AF1 85.6 0.48 1E-05 59.8 2.4 36 735-770 15-55 (900)
107 smart00384 AT_hook DNA binding 85.2 0.49 1.1E-05 37.6 1.4 16 400-415 1-16 (26)
108 PF13480 Acetyltransf_6: Acety 85.1 3.8 8.2E-05 39.9 7.9 64 1007-1071 71-134 (142)
109 PF06852 DUF1248: Protein of u 82.9 4.2 9E-05 45.0 7.8 82 1008-1091 48-137 (181)
110 smart00384 AT_hook DNA binding 82.9 0.63 1.4E-05 37.0 1.2 10 307-316 1-10 (26)
111 COG2388 Predicted acetyltransf 82.8 4.8 0.0001 40.7 7.5 72 1006-1081 16-87 (99)
112 cd01396 MeCP2_MBD MeCP2, MBD1, 78.9 2.3 5.1E-05 41.0 3.8 40 523-562 7-48 (77)
113 KOG0954 PHD finger protein [Ge 78.5 0.8 1.7E-05 58.4 0.7 36 875-915 284-319 (893)
114 COG5141 PHD zinc finger-contai 77.4 1 2.2E-05 55.4 1.1 34 876-914 207-240 (669)
115 COG3053 CitC Citrate lyase syn 77.3 5.7 0.00012 47.0 6.9 81 1007-1093 37-117 (352)
116 PF01429 MBD: Methyl-CpG bindi 76.5 1.5 3.3E-05 41.7 1.8 40 523-562 11-53 (77)
117 KOG1701 Focal adhesion adaptor 72.5 0.91 2E-05 55.1 -0.9 23 738-760 284-306 (468)
118 COG4552 Eis Predicted acetyltr 71.8 4.2 9E-05 49.0 4.1 59 1030-1091 69-127 (389)
119 PF15446 zf-PHD-like: PHD/FYVE 70.1 7 0.00015 43.1 5.1 24 740-763 15-38 (175)
120 KOG3235 Subunit of the major N 68.9 4.6 0.0001 44.2 3.4 63 1035-1097 75-141 (193)
121 cd00122 MBD MeCP2, MBD1, MBD2, 68.2 7.5 0.00016 35.7 4.2 39 524-562 7-47 (62)
122 KOG2752 Uncharacterized conser 66.9 4.6 0.0001 47.9 3.1 92 813-904 57-174 (345)
123 COG1243 ELP3 Histone acetyltra 63.9 6.8 0.00015 48.6 3.9 49 1040-1089 459-507 (515)
124 COG3981 Predicted acetyltransf 61.6 16 0.00035 40.4 5.8 69 1007-1077 70-143 (174)
125 PF07227 DUF1423: Protein of u 60.9 5.7 0.00012 48.9 2.6 41 848-897 124-164 (446)
126 PF13831 PHD_2: PHD-finger; PD 60.6 1.9 4.2E-05 36.2 -1.0 31 877-911 2-33 (36)
127 KOG1081 Transcription factor N 55.4 7.9 0.00017 48.1 2.5 45 809-854 87-131 (463)
128 COG5628 Predicted acetyltransf 54.6 22 0.00047 37.8 5.1 85 1009-1098 39-131 (143)
129 cd04264 DUF619-NAGS DUF619 dom 54.3 18 0.00039 36.6 4.4 53 1006-1060 9-63 (99)
130 PF14446 Prok-RING_1: Prokaryo 52.1 7.5 0.00016 35.9 1.2 28 812-839 6-37 (54)
131 TIGR03694 exosort_acyl putativ 52.0 75 0.0016 36.3 9.3 96 997-1093 46-200 (241)
132 PF13832 zf-HC5HC2H_2: PHD-zin 47.4 9.6 0.00021 37.8 1.3 22 877-898 66-89 (110)
133 PF11793 FANCL_C: FANCL C-term 46.1 12 0.00025 35.5 1.5 28 812-839 3-38 (70)
134 PF02474 NodA: Nodulation prot 44.7 20 0.00043 40.0 3.2 51 1030-1081 84-134 (196)
135 PF12861 zf-Apc11: Anaphase-pr 43.9 8.7 0.00019 38.2 0.4 31 823-855 47-79 (85)
136 TIGR03019 pepcterm_femAB FemAB 42.5 69 0.0015 37.4 7.3 80 1010-1090 198-280 (330)
137 KOG1701 Focal adhesion adaptor 40.1 3.1 6.7E-05 50.8 -3.9 69 812-895 275-362 (468)
138 PF13832 zf-HC5HC2H_2: PHD-zin 39.5 14 0.00031 36.6 1.2 29 811-839 55-86 (110)
139 KOG2036 Predicted P-loop ATPas 39.2 14 0.0003 47.9 1.2 71 963-1058 560-641 (1011)
140 KOG1246 DNA-binding protein ju 37.6 22 0.00047 47.4 2.7 47 812-858 156-206 (904)
141 KOG1632 Uncharacterized PHD Zn 36.7 34 0.00074 41.3 3.8 59 878-939 74-135 (345)
142 PF01853 MOZ_SAS: MOZ/SAS fami 36.3 72 0.0016 36.0 5.9 24 1033-1056 82-105 (188)
143 PF05502 Dynactin_p62: Dynacti 35.9 24 0.00053 44.1 2.6 30 822-854 4-33 (483)
144 KOG4628 Predicted E3 ubiquitin 35.7 24 0.00052 42.7 2.4 44 812-856 230-276 (348)
145 PF14621 RFX5_DNA_bdg: RFX5 DN 35.3 11 0.00023 42.0 -0.5 11 306-316 67-77 (219)
146 smart00258 SAND SAND domain. 34.6 21 0.00046 34.7 1.4 42 742-783 22-66 (73)
147 PF13771 zf-HC5HC2H: PHD-like 34.5 19 0.00042 34.3 1.1 28 812-839 37-67 (90)
148 PF13639 zf-RING_2: Ring finge 32.7 5.2 0.00011 33.8 -2.7 39 812-854 1-44 (44)
149 PF01342 SAND: SAND domain; I 32.1 9.3 0.0002 37.4 -1.4 39 743-783 37-75 (82)
150 PLN03238 probable histone acet 32.1 51 0.0011 39.2 4.1 24 1033-1056 157-180 (290)
151 PF10497 zf-4CXXC_R1: Zinc-fin 30.8 25 0.00053 36.0 1.2 36 826-861 33-79 (105)
152 cd04265 DUF619-NAGS-U DUF619 d 30.7 54 0.0012 33.3 3.5 41 1020-1060 22-63 (99)
153 KOG2747 Histone acetyltransfer 29.4 38 0.00082 41.7 2.6 22 1034-1055 263-284 (396)
154 PF14446 Prok-RING_1: Prokaryo 29.3 24 0.00053 32.7 0.8 34 853-897 6-39 (54)
155 PF13771 zf-HC5HC2H: PHD-like 27.9 21 0.00046 34.0 0.2 36 877-912 47-88 (90)
156 PRK00756 acyltransferase NodA; 27.2 49 0.0011 36.9 2.7 50 1030-1097 84-133 (196)
157 KOG3576 Ovo and related transc 27.2 19 0.00041 41.0 -0.3 66 821-895 115-189 (267)
158 PF14621 RFX5_DNA_bdg: RFX5 DN 26.7 28 0.0006 38.9 0.8 14 398-411 66-79 (219)
159 PF04216 FdhE: Protein involve 25.5 31 0.00068 40.0 1.0 64 811-889 172-248 (290)
160 PRK03564 formate dehydrogenase 25.2 72 0.0016 38.3 3.8 26 810-835 186-224 (309)
161 PLN03239 histone acetyltransfe 24.7 66 0.0014 39.2 3.5 23 1033-1055 215-237 (351)
162 KOG3612 PHD Zn-finger protein 24.6 49 0.0011 42.1 2.5 45 810-854 59-106 (588)
163 smart00391 MBD Methyl-CpG bind 24.5 1.1E+02 0.0023 30.0 4.1 40 523-562 8-50 (77)
164 cd01397 HAT_MBD Methyl-CpG bin 24.4 76 0.0017 31.0 3.2 56 523-583 6-63 (73)
165 PTZ00064 histone acetyltransfe 24.0 67 0.0015 40.8 3.4 24 1033-1056 386-409 (552)
166 KOG2535 RNA polymerase II elon 23.9 74 0.0016 38.8 3.6 48 1041-1089 497-545 (554)
167 KOG1169 Diacylglycerol kinase 22.9 39 0.00084 43.8 1.2 79 812-896 117-211 (634)
168 PF05301 Mec-17: Touch recepto 21.8 1E+02 0.0022 32.7 3.8 62 1039-1107 54-116 (120)
169 PF13901 DUF4206: Domain of un 21.4 66 0.0014 36.0 2.4 34 813-853 154-195 (202)
170 PF12678 zf-rbx1: RING-H2 zinc 21.3 24 0.00051 33.5 -0.8 24 827-854 48-73 (73)
171 PF13880 Acetyltransf_13: ESCO 20.3 53 0.0012 31.8 1.3 24 1036-1059 10-33 (70)
172 PF01233 NMT: Myristoyl-CoA:pr 20.3 3.4E+02 0.0073 30.4 7.3 65 1002-1066 72-145 (162)
No 1
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.72 E-value=3e-09 Score=118.47 Aligned_cols=88 Identities=23% Similarity=0.526 Sum_probs=72.2
Q ss_pred cccceeCCCC---------ceEecccCCCcCCcCcCCCC-----CCCCCCeecccc-ccccccCcCCcccccCCCCCccc
Q 000404 812 DTCGICGDGG---------DLICCDGCPSTFHQNCLDIK-----KFPSGKWHCVYC-SCQFCGRINESTCHVNDQDDSAL 876 (1562)
Q Consensus 812 d~C~VCgdGG---------eLLcCD~CPraFH~~CL~L~-----evPeGdW~Cp~C-~C~~CGk~~g~~C~r~~n~~~sd 876 (1562)
..|.+|.++- .+++|..|..+||++|+.+. .+....|.|..| .|.+|+... ..
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~------------~E 326 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPV------------IE 326 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcc------------cc
Confidence 4699998753 39999999999999999843 234568999999 599998743 34
Q ss_pred ccccccccccccccCCCCCCCCCCcccCCCccccccccH
Q 000404 877 STLQICSLCEEKYHQSCSQTDGAVQYEPSSLSFCGKKCQ 915 (1562)
Q Consensus 877 ~tLL~CDQCER~YHvsCLrp~~~L~evPeg~WFCsk~Cq 915 (1562)
..+++||.|+|.||..|... ...|.+.|+|-..|.
T Consensus 327 ~E~~FCD~CDRG~HT~CVGL----~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 327 SEHLFCDVCDRGPHTLCVGL----QDLPRGEWICDMRCR 361 (381)
T ss_pred hheeccccccCCCCcccccc----ccccCccchhhhHHH
Confidence 56899999999999999974 468999999976664
No 2
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.68 E-value=5.3e-09 Score=116.08 Aligned_cols=91 Identities=26% Similarity=0.700 Sum_probs=72.3
Q ss_pred cccceeCC----------CCceEecccCCCcCCcCcCCC-----CCCCCCCeeccccc-cccccCcCCcccccCCCCCcc
Q 000404 812 DTCGICGD----------GGDLICCDGCPSTFHQNCLDI-----KKFPSGKWHCVYCS-CQFCGRINESTCHVNDQDDSA 875 (1562)
Q Consensus 812 d~C~VCgd----------GGeLLcCD~CPraFH~~CL~L-----~evPeGdW~Cp~C~-C~~CGk~~g~~C~r~~n~~~s 875 (1562)
.+|-.|-. +.+|+.|..|.++-|+.||.. ..|....|.|.+|. |.+||... .
T Consensus 225 ~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtse------------n 292 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSE------------N 292 (336)
T ss_pred cccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcC------------C
Confidence 46777753 346999999999999999973 34556789999995 77888642 3
Q ss_pred cccccccccccccccCCCCCCCCCCcccCCCccccccccHHH
Q 000404 876 LSTLQICSLCEEKYHQSCSQTDGAVQYEPSSLSFCGKKCQEI 917 (1562)
Q Consensus 876 d~tLL~CDQCER~YHvsCLrp~~~L~evPeg~WFCsk~CqeI 917 (1562)
++.+++||-|+|.||++||.|+ +.+.|++.|-|- -|-+.
T Consensus 293 ddqllfcddcdrgyhmyclspp--m~eppegswsc~-KOG~~ 331 (336)
T KOG1244|consen 293 DDQLLFCDDCDRGYHMYCLSPP--MVEPPEGSWSCH-LCLEE 331 (336)
T ss_pred CceeEeecccCCceeeEecCCC--cCCCCCCchhHH-HHHHH
Confidence 5789999999999999999985 668899999993 55443
No 3
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.67 E-value=4.8e-09 Score=116.47 Aligned_cols=80 Identities=25% Similarity=0.686 Sum_probs=64.3
Q ss_pred CCceecCCCCCcccccccccCCCCc-cccCccceeecCCCchhhhhhhhccccccccccCccccccCCCCCcccccceeC
Q 000404 740 RDGIRCDCCSEIFTISKFDTHSKSK-LCHPFQNLYFESGSSLLQCILDSWNKQDESKRKGFHFVNFDGEDPNDDTCGICG 818 (1562)
Q Consensus 740 gdGI~CdCC~kvFhpScFEaHAGs~-scrPYkNIfLedGkSLleC~leAw~kq~kserkgf~~Vd~~gdD~ndd~C~VCg 818 (1562)
.+.|.|+-|++.-||+|+...+.|- ..+.|. |++.+| .+|.+||
T Consensus 244 eelvscsdcgrsghpsclqft~nm~~avk~yr-------wqciec----------------------------k~csicg 288 (336)
T KOG1244|consen 244 EELVSCSDCGRSGHPSCLQFTANMIAAVKTYR-------WQCIEC----------------------------KYCSICG 288 (336)
T ss_pred hhhcchhhcCCCCCcchhhhhHHHHHHHHhhe-------eeeeec----------------------------ceecccc
Confidence 4569999999999999999988763 355554 233333 4699999
Q ss_pred CC---CceEecccCCCcCCcCcCC--CCCCCCCCeeccccc
Q 000404 819 DG---GDLICCDGCPSTFHQNCLD--IKKFPSGKWHCVYCS 854 (1562)
Q Consensus 819 dG---GeLLcCD~CPraFH~~CL~--L~evPeGdW~Cp~C~ 854 (1562)
.. .+||+||.|++.||++||. +.+.|+|.|.|..|.
T Consensus 289 tsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 289 TSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred CcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence 64 5699999999999999997 667899999999985
No 4
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.63 E-value=1.8e-07 Score=84.57 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=67.1
Q ss_pred cEEEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCc
Q 000404 1007 FFTAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGF 1086 (1562)
Q Consensus 1007 fYcaVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF 1086 (1562)
.+.++++.++++|+++.+.-.+. .+.|..++|.++|||||+|+.||+.+++.+.. ..+++-+.+.++.||+ ++||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~-~~GF 77 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNED-FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYE-KLGF 77 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTT-EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHH-HTTE
T ss_pred cEEEEEEECCEEEEEEEEEEcCC-EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHH-HCcC
Confidence 46788899999999999977664 89999999999999999999999999888754 5567778899999999 8999
Q ss_pred ee
Q 000404 1087 QP 1088 (1562)
Q Consensus 1087 ~~ 1088 (1562)
.+
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 75
No 5
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.61 E-value=2.1e-08 Score=121.02 Aligned_cols=112 Identities=31% Similarity=0.846 Sum_probs=82.1
Q ss_pred ccceeCCCC-----ceEeccc--CCCcCCcCcCCCCCCCCCCeecccc---------ccccccCcCCc------------
Q 000404 813 TCGICGDGG-----DLICCDG--CPSTFHQNCLDIKKFPSGKWHCVYC---------SCQFCGRINES------------ 864 (1562)
Q Consensus 813 ~C~VCgdGG-----eLLcCD~--CPraFH~~CL~L~evPeGdW~Cp~C---------~C~~CGk~~g~------------ 864 (1562)
-|.||.|.. -|+.||+ |..+.|+.|.++.+||.|.|||..| +|..|.-.++.
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHV 86 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHV 86 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEE
Confidence 499999853 3999994 9999999999999999999999999 37777544332
Q ss_pred --------------------------------ccccCCCC----Ccccccccccc--cccccccCCCCCCCCCCccc---
Q 000404 865 --------------------------------TCHVNDQD----DSALSTLQICS--LCEEKYHQSCSQTDGAVQYE--- 903 (1562)
Q Consensus 865 --------------------------------~C~r~~n~----~~sd~tLL~CD--QCER~YHvsCLrp~~~L~ev--- 903 (1562)
+|..|... ...-+..|.|+ .|.+.||+.|.+.-+++-|.
T Consensus 87 VCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn 166 (900)
T KOG0956|consen 87 VCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGN 166 (900)
T ss_pred EEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceecccc
Confidence 23322211 12345678887 59999999999987766432
Q ss_pred -CCCccccccccHHHHHHHHHHh
Q 000404 904 -PSSLSFCGKKCQEIFERLEKLL 925 (1562)
Q Consensus 904 -Peg~WFCsk~CqeI~ekLQkLL 925 (1562)
-...-||+ ||+..|.+|.+--
T Consensus 167 ~~dNVKYCG-YCk~HfsKlkk~~ 188 (900)
T KOG0956|consen 167 ISDNVKYCG-YCKYHFSKLKKSP 188 (900)
T ss_pred ccccceech-hHHHHHHHhhcCC
Confidence 23456785 9999999987543
No 6
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.59 E-value=2.2e-07 Score=87.49 Aligned_cols=74 Identities=23% Similarity=0.327 Sum_probs=65.5
Q ss_pred cEEEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCc
Q 000404 1007 FFTAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGF 1086 (1562)
Q Consensus 1007 fYcaVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF 1086 (1562)
...+|++.++++|+.+.++ .-++|..+.+.+.|||+|+|+.||..+++.++. ++..|.+.+...+..||+ ++||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~-~~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYR-KLGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHH-HTT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHH-hCCC
Confidence 5788899999999999986 345588899999999999999999999999988 999999999999999999 8998
No 7
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.59 E-value=1.8e-07 Score=83.30 Aligned_cols=74 Identities=23% Similarity=0.366 Sum_probs=67.5
Q ss_pred eeCCEEEEEEEEEEeCc-----ceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchh---hHHhhhccc
Q 000404 1013 ERDDEIISAASIRIHGK-----ELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISE---LRETWTSVF 1084 (1562)
Q Consensus 1013 e~gdeIVSaASIRI~G~-----~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~e---Av~~Wt~kF 1084 (1562)
+.+++||+.+.+++... ..+.|..+++.+.|||||+|+.||+.+++.++..|+..|++...++ +..||. ++
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~-k~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYE-KL 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHH-HT
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHH-Hc
Confidence 57899999999998775 5999999999999999999999999999999999999998877765 569999 89
Q ss_pred Cce
Q 000404 1085 GFQ 1087 (1562)
Q Consensus 1085 GF~ 1087 (1562)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 995
No 8
>PRK10314 putative acyltransferase; Provisional
Probab=98.50 E-value=4.7e-07 Score=93.05 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=69.2
Q ss_pred EEeeCCEEEEEEEEEEeCc--ceeeeccccccccccccChhHHHHHHHHHHhhhC-CceEEEEccchhhHHhhhcccCce
Q 000404 1011 ILERDDEIISAASIRIHGK--ELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSL-NVEKLIIPAISELRETWTSVFGFQ 1087 (1562)
Q Consensus 1011 VLe~gdeIVSaASIRI~G~--~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sL-gVerLVLPA~~eAv~~Wt~kFGF~ 1087 (1562)
++..++++|+.|.+...+. ..++|--|++.++|||+|+|+.||..+++.+... +...++|.|...+..||. +|||.
T Consensus 52 ~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~-k~GF~ 130 (153)
T PRK10314 52 LGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQ-SFGFI 130 (153)
T ss_pred EEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHH-HCCCE
Confidence 4446899999998876542 4688999999999999999999999999988774 788999999999999999 89999
Q ss_pred ecch
Q 000404 1088 PLEV 1091 (1562)
Q Consensus 1088 ~me~ 1091 (1562)
.+.+
T Consensus 131 ~~g~ 134 (153)
T PRK10314 131 PVTE 134 (153)
T ss_pred ECCC
Confidence 9864
No 9
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.46 E-value=3.7e-08 Score=119.18 Aligned_cols=120 Identities=24% Similarity=0.592 Sum_probs=82.9
Q ss_pred eecCCCCCcccccccccCCCCccccCccceeecCCCchhhhhhhhccccccccccCccccccCCCCCcccccceeCCCC-
Q 000404 743 IRCDCCSEIFTISKFDTHSKSKLCHPFQNLYFESGSSLLQCILDSWNKQDESKRKGFHFVNFDGEDPNDDTCGICGDGG- 821 (1562)
Q Consensus 743 I~CdCC~kvFhpScFEaHAGs~scrPYkNIfLedGkSLleC~leAw~kq~kserkgf~~Vd~~gdD~ndd~C~VCgdGG- 821 (1562)
..|.+|.+.||+.|+-.- ..+..+..||.++.| ..|..|+.+|
T Consensus 36 ~ac~~c~~~yH~~cvt~~--------~~~~~l~~gWrC~~c----------------------------rvCe~c~~~gD 79 (694)
T KOG4443|consen 36 LACSDCGQKYHPYCVTSW--------AQHAVLSGGWRCPSC----------------------------RVCEACGTTGD 79 (694)
T ss_pred hhhhhhcccCCcchhhHH--------HhHHHhcCCcccCCc----------------------------eeeeeccccCC
Confidence 689999999999988641 111123334433333 2478888555
Q ss_pred --ceEecccCCCcCCcCcCC--CCCCCCCCeecccc-ccccccCcCCc-------------------ccccCCCCCc--c
Q 000404 822 --DLICCDGCPSTFHQNCLD--IKKFPSGKWHCVYC-SCQFCGRINES-------------------TCHVNDQDDS--A 875 (1562)
Q Consensus 822 --eLLcCD~CPraFH~~CL~--L~evPeGdW~Cp~C-~C~~CGk~~g~-------------------~C~r~~n~~~--s 875 (1562)
.+++|+.|+-+||.+|.. +..++.|.|+|+.| +|..|...... .|++|+.... .
T Consensus 80 ~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c~s~~~cPvc~~~Y~~~e 159 (694)
T KOG4443|consen 80 PKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPCASLSYCPVCLIVYQDSE 159 (694)
T ss_pred cccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhccCcccccccccccCchHHHhhhhcc
Confidence 599999999999999997 67899999999999 57777542211 2333322111 2
Q ss_pred cccccccccccccccCCCCCCCC
Q 000404 876 LSTLQICSLCEEKYHQSCSQTDG 898 (1562)
Q Consensus 876 d~tLL~CDQCER~YHvsCLrp~~ 898 (1562)
.-.++.|++|.+|.|..|....+
T Consensus 160 ~~~~~~c~~c~rwsh~~c~~~sd 182 (694)
T KOG4443|consen 160 SLPMVCCSICQRWSHGGCDGISD 182 (694)
T ss_pred chhhHHHHHhcccccCCCCccch
Confidence 22358999999999999988654
No 10
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.46 E-value=5.4e-08 Score=108.77 Aligned_cols=77 Identities=21% Similarity=0.463 Sum_probs=60.9
Q ss_pred CCceecCCCCCcccccccccCCCCcc-ccCccceeecCCCchhhhhhhhccccccccccCccccccCCCCCcccccceeC
Q 000404 740 RDGIRCDCCSEIFTISKFDTHSKSKL-CHPFQNLYFESGSSLLQCILDSWNKQDESKRKGFHFVNFDGEDPNDDTCGICG 818 (1562)
Q Consensus 740 gdGI~CdCC~kvFhpScFEaHAGs~s-crPYkNIfLedGkSLleC~leAw~kq~kserkgf~~Vd~~gdD~ndd~C~VCg 818 (1562)
...|+|.-|-..+||+|++....+.. .+.|. |++.+| ..|.||+
T Consensus 277 ~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~-------W~C~~C----------------------------~lC~IC~ 321 (381)
T KOG1512|consen 277 NSWIVCKPCATRPHPYCVAMIPELVGQYKTYF-------WKCSSC----------------------------ELCRICL 321 (381)
T ss_pred ccceeecccccCCCCcchhcCHHHHhHHhhcc-------hhhccc----------------------------HhhhccC
Confidence 45699999999999999998754422 23332 233333 3599999
Q ss_pred CC---CceEecccCCCcCCcCcCCCCCCCCCCeecc
Q 000404 819 DG---GDLICCDGCPSTFHQNCLDIKKFPSGKWHCV 851 (1562)
Q Consensus 819 dG---GeLLcCD~CPraFH~~CL~L~evPeGdW~Cp 851 (1562)
.+ .++++||.|++.||++|++|..+|.|.|.|.
T Consensus 322 ~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD 357 (381)
T KOG1512|consen 322 GPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICD 357 (381)
T ss_pred CcccchheeccccccCCCCccccccccccCccchhh
Confidence 74 5799999999999999999999999999997
No 11
>PTZ00330 acetyltransferase; Provisional
Probab=98.36 E-value=1.1e-06 Score=86.25 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=71.2
Q ss_pred EEEEEeeCCEEEEEEEEEEe------CcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhh
Q 000404 1008 FTAILERDDEIISAASIRIH------GKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWT 1081 (1562)
Q Consensus 1008 YcaVLe~gdeIVSaASIRI~------G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt 1081 (1562)
+.++.+.++++|+.+.+.+. +..++++--+.+.++|||||+|+.||..+++.+...++.+|++.+...+..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 34555678899999987653 223567777899999999999999999999999999999999999999999999
Q ss_pred cccCceecchh
Q 000404 1082 SVFGFQPLEVS 1092 (1562)
Q Consensus 1082 ~kFGF~~me~~ 1092 (1562)
++||...+..
T Consensus 133 -k~GF~~~~~~ 142 (147)
T PTZ00330 133 -KLGFRACERQ 142 (147)
T ss_pred -HCCCEEeceE
Confidence 9999998744
No 12
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.32 E-value=2.6e-07 Score=111.92 Aligned_cols=46 Identities=46% Similarity=1.263 Sum_probs=41.3
Q ss_pred ccccceeCCCCce---EecccCCCcCCcCcCC----CCCCCCCCeeccccccc
Q 000404 811 DDTCGICGDGGDL---ICCDGCPSTFHQNCLD----IKKFPSGKWHCVYCSCQ 856 (1562)
Q Consensus 811 dd~C~VCgdGGeL---LcCD~CPraFH~~CL~----L~evPeGdW~Cp~C~C~ 856 (1562)
.++|..|+..|.. ||||+||++||+.||. .+.+|.|.|+|+.|.|.
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 4699999999886 9999999999999997 35789999999999764
No 13
>PRK03624 putative acetyltransferase; Provisional
Probab=98.25 E-value=2.6e-06 Score=81.33 Aligned_cols=82 Identities=13% Similarity=0.248 Sum_probs=68.4
Q ss_pred cEEEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccc---hhhHHhhhcc
Q 000404 1007 FFTAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAI---SELRETWTSV 1083 (1562)
Q Consensus 1007 fYcaVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~---~eAv~~Wt~k 1083 (1562)
.+.+++..++++|+.+.+...+ ..+.+..|++.+.|||||+|+.||..++..+...++.++++-.. ..++.+|. +
T Consensus 45 ~~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~-k 122 (140)
T PRK03624 45 SLFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYE-A 122 (140)
T ss_pred ceEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHH-H
Confidence 3456677889999998876544 44677789999999999999999999999999999999877665 45889998 9
Q ss_pred cCceecc
Q 000404 1084 FGFQPLE 1090 (1562)
Q Consensus 1084 FGF~~me 1090 (1562)
+||...+
T Consensus 123 ~GF~~~~ 129 (140)
T PRK03624 123 LGYEEQD 129 (140)
T ss_pred cCCcccc
Confidence 9999754
No 14
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.23 E-value=4e-06 Score=81.99 Aligned_cols=80 Identities=11% Similarity=0.097 Sum_probs=68.0
Q ss_pred EEEEeeCCEEEEEEEEEEe-----CcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccc---hhhHHhh
Q 000404 1009 TAILERDDEIISAASIRIH-----GKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAI---SELRETW 1080 (1562)
Q Consensus 1009 caVLe~gdeIVSaASIRI~-----G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~---~eAv~~W 1080 (1562)
..|++.++++|+.+.+... ....+++--+++.++|||||+|+.||..+++.++..|...+.|... ..|..||
T Consensus 49 ~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY 128 (144)
T PRK10146 49 YHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFY 128 (144)
T ss_pred EEEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHH
Confidence 3456788999999988753 2235788889999999999999999999999999999999988765 4799999
Q ss_pred hcccCceec
Q 000404 1081 TSVFGFQPL 1089 (1562)
Q Consensus 1081 t~kFGF~~m 1089 (1562)
. ++||...
T Consensus 129 ~-~~Gf~~~ 136 (144)
T PRK10146 129 L-REGYEQS 136 (144)
T ss_pred H-HcCCchh
Confidence 9 8999765
No 15
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.20 E-value=6.1e-06 Score=79.48 Aligned_cols=110 Identities=18% Similarity=0.229 Sum_probs=78.0
Q ss_pred hHhhhcccccCCCCCCCCCCCcchhHHhhccCCCCccccccccEEEEEeeCCEEEEEEEE-----EEeCc--ceeeeccc
Q 000404 965 AVALSVMDECFLPLPDHRSGINLIHNILYNFGSNFKRLNYKGFFTAILERDDEIISAASI-----RIHGK--ELAEMPFI 1037 (1562)
Q Consensus 965 AVALsIm~ECFdPIvD~rSGiDLIpdMVYnrGSnfkRLDF~GfYcaVLe~gdeIVSaASI-----RI~G~--~vAEMPLV 1037 (1562)
.....++.++|.+-.... ..+-|. ..-+...++++...+++||+.+.+ .+.|. .++.+--|
T Consensus 11 ~~i~~l~~~~F~~~~~~~------~~~~~~------~~~~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v 78 (127)
T PF13527_consen 11 EQIIELFNEAFGDSESPP------EIWEYF------RNLYGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDV 78 (127)
T ss_dssp HHHHHHHHHHTTT-CHHH------HHHHHH------HHHHHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCCCCch------hhhhhh------hcccCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEE
Confidence 334567788887644332 122221 111122367888889999998744 34454 57899999
Q ss_pred cccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCceec
Q 000404 1038 GTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQPL 1089 (1562)
Q Consensus 1038 ATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~m 1089 (1562)
||.++|||||+++.||..+++.+...|+..+++-+ ....+|. +|||..+
T Consensus 79 ~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~-~~G~~~~ 127 (127)
T PF13527_consen 79 AVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYR-RFGFEYA 127 (127)
T ss_dssp EE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHH-HTTEEEE
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhh-cCCCEEC
Confidence 99999999999999999999999999999999877 4478998 8999864
No 16
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.17 E-value=5.6e-07 Score=109.29 Aligned_cols=88 Identities=30% Similarity=0.797 Sum_probs=70.6
Q ss_pred ccccceeCCCC-----ceEecccCCCcCCcCcCCC--C-CCCCCCeeccccc-cccccCcCCcccccCCCCCcccccccc
Q 000404 811 DDTCGICGDGG-----DLICCDGCPSTFHQNCLDI--K-KFPSGKWHCVYCS-CQFCGRINESTCHVNDQDDSALSTLQI 881 (1562)
Q Consensus 811 dd~C~VCgdGG-----eLLcCD~CPraFH~~CL~L--~-evPeGdW~Cp~C~-C~~CGk~~g~~C~r~~n~~~sd~tLL~ 881 (1562)
...|.+|+..| .|+.|..|...||.+|+.+ . .+..+-|.|+.|+ |..|+... +...+++
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~g------------D~~kf~~ 85 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTG------------DPKKFLL 85 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccC------------Ccccccc
Confidence 35688888654 4999999999999999983 2 2334559999995 88898432 3556789
Q ss_pred cccccccccCCCCCCCCCCcccCCCcccccc
Q 000404 882 CSLCEEKYHQSCSQTDGAVQYEPSSLSFCGK 912 (1562)
Q Consensus 882 CDQCER~YHvsCLrp~~~L~evPeg~WFCsk 912 (1562)
|+.|+-.||.+|..| .+..+|.++|+|.+
T Consensus 86 Ck~cDvsyh~yc~~P--~~~~v~sg~~~ckk 114 (694)
T KOG4443|consen 86 CKRCDVSYHCYCQKP--PNDKVPSGPWLCKK 114 (694)
T ss_pred cccccccccccccCC--ccccccCcccccHH
Confidence 999999999999998 46788999999964
No 17
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.15 E-value=8.3e-07 Score=104.73 Aligned_cols=93 Identities=32% Similarity=0.737 Sum_probs=71.7
Q ss_pred CCCCcccccceeCCCC-----ceEecccCCCcCCcCcCCCCCCCCCCeeccccc--------cccccCcCCcccccCCC-
Q 000404 806 GEDPNDDTCGICGDGG-----DLICCDGCPSTFHQNCLDIKKFPSGKWHCVYCS--------CQFCGRINESTCHVNDQ- 871 (1562)
Q Consensus 806 gdD~ndd~C~VCgdGG-----eLLcCD~CPraFH~~CL~L~evPeGdW~Cp~C~--------C~~CGk~~g~~C~r~~n- 871 (1562)
.+|.-++.|.+|.... .+++||+|.-+.|+.|.++.-+|+|.|+|..|. |.+|....+..|+..++
T Consensus 188 ~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgr 267 (669)
T COG5141 188 PSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGR 267 (669)
T ss_pred CchhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCc
Confidence 3445677899998543 399999999999999999999999999999993 88898777765554210
Q ss_pred --------------------C---------------------Ccccccccccc--cccccccCCCCCCCC
Q 000404 872 --------------------D---------------------DSALSTLQICS--LCEEKYHQSCSQTDG 898 (1562)
Q Consensus 872 --------------------~---------------------~~sd~tLL~CD--QCER~YHvsCLrp~~ 898 (1562)
+ ....++.+.|. .|-++||+.|.+..+
T Consensus 268 W~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArrag 337 (669)
T COG5141 268 WGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARRAG 337 (669)
T ss_pred hHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhhcc
Confidence 0 01356777887 499999999998654
No 18
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.11 E-value=1.1e-05 Score=80.33 Aligned_cols=74 Identities=14% Similarity=0.244 Sum_probs=63.8
Q ss_pred CCEEEEEEEEEEeC------cceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCcee
Q 000404 1015 DDEIISAASIRIHG------KELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQP 1088 (1562)
Q Consensus 1015 gdeIVSaASIRI~G------~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~ 1088 (1562)
++++|+.+.+.+.. ..++.+--+++.++|||||+|+.||..+++.+..+|+++|++...++...||. ++||..
T Consensus 63 ~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~y~-k~GF~~ 141 (150)
T PLN02706 63 SGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAFYE-KCGYVR 141 (150)
T ss_pred CCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHHHH-HCcCEE
Confidence 68999998875321 24456666899999999999999999999999999999999999888899999 899987
Q ss_pred c
Q 000404 1089 L 1089 (1562)
Q Consensus 1089 m 1089 (1562)
.
T Consensus 142 ~ 142 (150)
T PLN02706 142 K 142 (150)
T ss_pred e
Confidence 5
No 19
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.10 E-value=6.3e-06 Score=94.11 Aligned_cols=75 Identities=16% Similarity=0.330 Sum_probs=67.3
Q ss_pred EEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCceec
Q 000404 1010 AILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQPL 1089 (1562)
Q Consensus 1010 aVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~m 1089 (1562)
.+.+.++++|+++.+. + .++.-+|+.+.|||||+|+.||+.+++.++..|+.+++|-+...+..||. +|||..+
T Consensus 9 ~v~~~~~~iVG~~~l~--~---~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYe-k~GF~~~ 82 (297)
T cd02169 9 GIFDDAGELIATGSIA--G---NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFR-GLGFKEL 82 (297)
T ss_pred EEEEECCEEEEEEEec--c---CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHH-HCCCEEe
Confidence 3456779999998774 2 46888999999999999999999999999999999999999999999999 9999988
Q ss_pred c
Q 000404 1090 E 1090 (1562)
Q Consensus 1090 e 1090 (1562)
.
T Consensus 83 ~ 83 (297)
T cd02169 83 A 83 (297)
T ss_pred c
Confidence 6
No 20
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.08 E-value=1.5e-05 Score=79.02 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=69.6
Q ss_pred ccEEEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEc---cchhhHHhhhc
Q 000404 1006 GFFTAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIP---AISELRETWTS 1082 (1562)
Q Consensus 1006 GfYcaVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLP---A~~eAv~~Wt~ 1082 (1562)
+++..++..++++|+.+.++.+.. .+++-.+++.+.|||||+|+.||..+++.+...++..+++. .-..+..+|.
T Consensus 39 ~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~- 116 (146)
T PRK09491 39 RYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYE- 116 (146)
T ss_pred CceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHH-
Confidence 455556678899999998876554 35677789999999999999999999999999999998875 3456899999
Q ss_pred ccCceecch
Q 000404 1083 VFGFQPLEV 1091 (1562)
Q Consensus 1083 kFGF~~me~ 1091 (1562)
++||.....
T Consensus 117 k~Gf~~~~~ 125 (146)
T PRK09491 117 SLGFNEVTI 125 (146)
T ss_pred HcCCEEeee
Confidence 899997764
No 21
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.03 E-value=2e-05 Score=74.66 Aligned_cols=81 Identities=16% Similarity=0.277 Sum_probs=67.5
Q ss_pred EEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEc---cchhhHHhhhcccC
Q 000404 1009 TAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIP---AISELRETWTSVFG 1085 (1562)
Q Consensus 1009 caVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLP---A~~eAv~~Wt~kFG 1085 (1562)
.+++..++++|+.+.++... ....+-.+++.++|||||+|+.||..+++.+...+...+++. .-..+..+|+ ++|
T Consensus 33 ~~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~-~~G 110 (131)
T TIGR01575 33 YLLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYK-KLG 110 (131)
T ss_pred EEEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHH-HcC
Confidence 34455689999999877633 456778889999999999999999999999999999999884 4566889999 899
Q ss_pred ceecch
Q 000404 1086 FQPLEV 1091 (1562)
Q Consensus 1086 F~~me~ 1091 (1562)
|.....
T Consensus 111 f~~~~~ 116 (131)
T TIGR01575 111 FNEIAI 116 (131)
T ss_pred CCcccc
Confidence 998743
No 22
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.02 E-value=1.4e-05 Score=83.25 Aligned_cols=79 Identities=15% Similarity=0.300 Sum_probs=68.7
Q ss_pred EEEEe-eCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCce
Q 000404 1009 TAILE-RDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQ 1087 (1562)
Q Consensus 1009 caVLe-~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~ 1087 (1562)
+.+++ .++++|+.+.+.+....++++-.+++.+.|||+|+|+.||+.+++..+..|+.+|++... +..||+ ++||.
T Consensus 47 ~~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~-k~GF~ 123 (169)
T PRK07922 47 FWVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFA-RHGFV 123 (169)
T ss_pred EEEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHH-HCCCE
Confidence 34666 889999999887666678999999999999999999999999999999999999987543 478999 99999
Q ss_pred ecc
Q 000404 1088 PLE 1090 (1562)
Q Consensus 1088 ~me 1090 (1562)
.+.
T Consensus 124 ~~~ 126 (169)
T PRK07922 124 EID 126 (169)
T ss_pred ECc
Confidence 874
No 23
>PRK07757 acetyltransferase; Provisional
Probab=98.00 E-value=2e-05 Score=78.50 Aligned_cols=78 Identities=23% Similarity=0.384 Sum_probs=68.3
Q ss_pred EEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCceecc
Q 000404 1011 ILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQPLE 1090 (1562)
Q Consensus 1011 VLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~me 1090 (1562)
++..++++|+.+.+.+.....+++--|++.++|||+|+|+.||..+++.+...|+.++++-. .+..||. ++||..+.
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~--~~~~~Y~-k~GF~~~~ 121 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALT--YQPEFFE-KLGFREVD 121 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEe--CcHHHHH-HCCCEEcc
Confidence 45578999999999888888889988999999999999999999999999999999986543 3468999 89999985
Q ss_pred h
Q 000404 1091 V 1091 (1562)
Q Consensus 1091 ~ 1091 (1562)
.
T Consensus 122 ~ 122 (152)
T PRK07757 122 K 122 (152)
T ss_pred c
Confidence 4
No 24
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=97.98 E-value=2.3e-05 Score=82.26 Aligned_cols=85 Identities=9% Similarity=0.055 Sum_probs=70.8
Q ss_pred ccccEEEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccc---hhhHHhh
Q 000404 1004 YKGFFTAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAI---SELRETW 1080 (1562)
Q Consensus 1004 F~GfYcaVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~---~eAv~~W 1080 (1562)
+..++.++.+.++++|+.+.+...+...+++-.+++.+.|||||+|+.||..+++.+...|+.++++... ..+..+|
T Consensus 99 ~~~~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~y 178 (194)
T PRK10975 99 FDHQCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLY 178 (194)
T ss_pred cCCcEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHH
Confidence 3334444555678999999998766566889999999999999999999999999999999999987644 5689999
Q ss_pred hcccCceec
Q 000404 1081 TSVFGFQPL 1089 (1562)
Q Consensus 1081 t~kFGF~~m 1089 (1562)
. ++||...
T Consensus 179 e-k~Gf~~~ 186 (194)
T PRK10975 179 I-RSGANIE 186 (194)
T ss_pred H-HCCCeEe
Confidence 8 8999875
No 25
>PLN02825 amino-acid N-acetyltransferase
Probab=97.97 E-value=2.1e-05 Score=95.72 Aligned_cols=83 Identities=27% Similarity=0.337 Sum_probs=72.2
Q ss_pred EEEEeeCCEEEEEEEEEEeC-cceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCce
Q 000404 1009 TAILERDDEIISAASIRIHG-KELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQ 1087 (1562)
Q Consensus 1009 caVLe~gdeIVSaASIRI~G-~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~ 1087 (1562)
..|++.+++||++|.+..+. ...+||--||+.++|||+|+|+.||+++|+.++..|+++|.+-. ..+..||. ++||.
T Consensus 409 f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~-k~GF~ 486 (515)
T PLN02825 409 FVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFV-RRGFS 486 (515)
T ss_pred EEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHH-HCCCE
Confidence 45688999999999876554 46899999999999999999999999999999999999998865 45788998 89999
Q ss_pred ecchhh
Q 000404 1088 PLEVSS 1093 (1562)
Q Consensus 1088 ~me~~e 1093 (1562)
....++
T Consensus 487 ~~~~~~ 492 (515)
T PLN02825 487 ECSIES 492 (515)
T ss_pred EeChhh
Confidence 986544
No 26
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=97.94 E-value=2.4e-05 Score=92.57 Aligned_cols=81 Identities=25% Similarity=0.381 Sum_probs=70.7
Q ss_pred EEEeeCCEEEEEEEEEEeC-cceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCcee
Q 000404 1010 AILERDDEIISAASIRIHG-KELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQP 1088 (1562)
Q Consensus 1010 aVLe~gdeIVSaASIRI~G-~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~ 1088 (1562)
.|++.++++|+.+.+..+. ...+++-.+++.++|||||+|+.||+.+|+.+...|...|++-+. .+..||. ++||..
T Consensus 325 ~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~-k~GF~~ 402 (429)
T TIGR01890 325 SIIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFR-ERGFQT 402 (429)
T ss_pred EEEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHH-HCCCEE
Confidence 3567899999999988764 468999999999999999999999999999999999999877654 5689999 899999
Q ss_pred cchh
Q 000404 1089 LEVS 1092 (1562)
Q Consensus 1089 me~~ 1092 (1562)
+...
T Consensus 403 ~g~~ 406 (429)
T TIGR01890 403 ASVD 406 (429)
T ss_pred CChh
Confidence 9543
No 27
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=97.92 E-value=1.8e-05 Score=83.36 Aligned_cols=82 Identities=23% Similarity=0.415 Sum_probs=70.0
Q ss_pred EEEeeCCEEEEEEEEE-EeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCcee
Q 000404 1010 AILERDDEIISAASIR-IHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQP 1088 (1562)
Q Consensus 1010 aVLe~gdeIVSaASIR-I~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~ 1088 (1562)
.|++.++.+|++|-+- +...+++||.=+|..|+||++|+|..||..|+...+.+|++++++-+. .+.++.. ++||..
T Consensus 43 ~i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~~~~~F~-~~GF~~ 120 (153)
T COG1246 43 TIIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-RSPEFFA-ERGFTR 120 (153)
T ss_pred eeeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-ccHHHHH-HcCCeE
Confidence 3566788888877776 778899999999999999999999999999999999999999999886 3344444 899999
Q ss_pred cchhh
Q 000404 1089 LEVSS 1093 (1562)
Q Consensus 1089 me~~e 1093 (1562)
++.++
T Consensus 121 vd~~~ 125 (153)
T COG1246 121 VDKDE 125 (153)
T ss_pred Ccccc
Confidence 97644
No 28
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=97.88 E-value=4.5e-05 Score=80.21 Aligned_cols=78 Identities=8% Similarity=0.043 Sum_probs=68.2
Q ss_pred EEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccc---hhhHHhhhcccCce
Q 000404 1011 ILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAI---SELRETWTSVFGFQ 1087 (1562)
Q Consensus 1011 VLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~---~eAv~~Wt~kFGF~ 1087 (1562)
+.+.++++|+.+.+.......+++-.+++.++|||||+|+.|+..+++.+..+|+.+|++... ..++.||+ ++||.
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~-klGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYI-RSGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH-HcCCc
Confidence 446688999999988766567889999999999999999999999999999999999998754 45899999 99998
Q ss_pred ec
Q 000404 1088 PL 1089 (1562)
Q Consensus 1088 ~m 1089 (1562)
..
T Consensus 182 ~~ 183 (191)
T TIGR02382 182 IE 183 (191)
T ss_pred cc
Confidence 64
No 29
>PRK05279 N-acetylglutamate synthase; Validated
Probab=97.88 E-value=3.7e-05 Score=91.10 Aligned_cols=81 Identities=27% Similarity=0.447 Sum_probs=70.1
Q ss_pred EEEeeCCEEEEEEEEEEeC-cceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCcee
Q 000404 1010 AILERDDEIISAASIRIHG-KELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQP 1088 (1562)
Q Consensus 1010 aVLe~gdeIVSaASIRI~G-~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~ 1088 (1562)
.+++.++++|+.+.+..+. ...+++--+++.++|||||+|+.||+.+++.+...|+.+|++-. ..+..||. +|||..
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~-k~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFL-ERGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHH-HCcCEE
Confidence 4667899999998876554 36789999999999999999999999999999999999987755 56899998 999999
Q ss_pred cchh
Q 000404 1089 LEVS 1092 (1562)
Q Consensus 1089 me~~ 1092 (1562)
+...
T Consensus 415 ~g~~ 418 (441)
T PRK05279 415 VDVD 418 (441)
T ss_pred CChh
Confidence 8543
No 30
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=97.86 E-value=3.6e-05 Score=85.42 Aligned_cols=83 Identities=22% Similarity=0.251 Sum_probs=70.0
Q ss_pred ccEEEEEeeCCEEEEEEEEEEe-CcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchh---hHHhhh
Q 000404 1006 GFFTAILERDDEIISAASIRIH-GKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISE---LRETWT 1081 (1562)
Q Consensus 1006 GfYcaVLe~gdeIVSaASIRI~-G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~e---Av~~Wt 1081 (1562)
+.+.++++.++++|+.+++.+. ....++|--+++.++|||||+|+.||..+++.+...|+..+++.+... +..+|.
T Consensus 157 ~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~ 236 (266)
T TIGR03827 157 NVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFA 236 (266)
T ss_pred CcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHH
Confidence 3445566779999999997553 345689999999999999999999999999999999999999988765 456888
Q ss_pred cccCceec
Q 000404 1082 SVFGFQPL 1089 (1562)
Q Consensus 1082 ~kFGF~~m 1089 (1562)
++||...
T Consensus 237 -k~GF~~~ 243 (266)
T TIGR03827 237 -RLGYAYG 243 (266)
T ss_pred -HcCCccc
Confidence 8999975
No 31
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=97.82 E-value=5e-05 Score=88.13 Aligned_cols=86 Identities=22% Similarity=0.299 Sum_probs=75.0
Q ss_pred ccccccEEEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhh
Q 000404 1002 LNYKGFFTAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWT 1081 (1562)
Q Consensus 1002 LDF~GfYcaVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt 1081 (1562)
++..-.|++++..+++||++|++ .|. .+--||+.++|||+|+|+.||++|++.+...|+.++.|.+.+....||.
T Consensus 26 ~d~~~d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~ 100 (332)
T TIGR00124 26 LDAPLEIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFE 100 (332)
T ss_pred ccCCCCEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHH
Confidence 34444678888899999999987 342 3779999999999999999999999999999999999999999999998
Q ss_pred cccCceecchhh
Q 000404 1082 SVFGFQPLEVSS 1093 (1562)
Q Consensus 1082 ~kFGF~~me~~e 1093 (1562)
++||..+....
T Consensus 101 -klGF~~i~~~~ 111 (332)
T TIGR00124 101 -YCGFKTLAEAK 111 (332)
T ss_pred -HcCCEEeeeec
Confidence 99999986543
No 32
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=97.80 E-value=4.8e-05 Score=94.00 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=70.7
Q ss_pred EEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCceec
Q 000404 1010 AILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQPL 1089 (1562)
Q Consensus 1010 aVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~m 1089 (1562)
+|++.++++|+.+.+.......++|--+++.+.|||||+|+.||+.+++.++..|+..|++-.. +..||. +|||...
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYe-k~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFM-KQGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHH-HCCCEEC
Confidence 5677899999999988876667899999999999999999999999999999999999988653 579999 9999988
Q ss_pred chh
Q 000404 1090 EVS 1092 (1562)
Q Consensus 1090 e~~ 1092 (1562)
...
T Consensus 583 ~~~ 585 (614)
T PRK12308 583 SKS 585 (614)
T ss_pred Ccc
Confidence 643
No 33
>PHA00673 acetyltransferase domain containing protein
Probab=97.71 E-value=0.00014 Score=76.90 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=72.0
Q ss_pred ccEEEEEeeCCEEEEEEEEEEeC------cceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchh--hH
Q 000404 1006 GFFTAILERDDEIISAASIRIHG------KELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISE--LR 1077 (1562)
Q Consensus 1006 GfYcaVLe~gdeIVSaASIRI~G------~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~e--Av 1077 (1562)
+...++.+.+++||+.+.+.+.. ...+.|-.+-+.+.|||||+|+.||..+|+.++..|...|.|.|+++ .+
T Consensus 54 ~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv 133 (154)
T PHA00673 54 VAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLV 133 (154)
T ss_pred CcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccch
Confidence 34455666799999999887643 46778999999999999999999999999999999999999999986 89
Q ss_pred HhhhcccCceec
Q 000404 1078 ETWTSVFGFQPL 1089 (1562)
Q Consensus 1078 ~~Wt~kFGF~~m 1089 (1562)
.||. +.|+...
T Consensus 134 ~fy~-~~g~~~~ 144 (154)
T PHA00673 134 QLLP-AAGYRET 144 (154)
T ss_pred HHHH-hCCchhh
Confidence 9999 8998754
No 34
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=97.71 E-value=0.00015 Score=71.98 Aligned_cols=85 Identities=12% Similarity=0.281 Sum_probs=67.4
Q ss_pred cEEEEEeeCCEEEEEEEEEEeC----cceeeeccccccccccccChhHHHHHHHHHHhhh-CCceEEEEccc---hhhHH
Q 000404 1007 FFTAILERDDEIISAASIRIHG----KELAEMPFIGTRHMYRRQGMCRRLLTGIESALCS-LNVEKLIIPAI---SELRE 1078 (1562)
Q Consensus 1007 fYcaVLe~gdeIVSaASIRI~G----~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~s-LgVerLVLPA~---~eAv~ 1078 (1562)
.++++.+.++++|+.+++.... ...+++. +.+.++|||||+|+.||..++..+.. ++..++++... ..++.
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 4566777889999999886531 2456655 78899999999999999999999887 78888776654 56889
Q ss_pred hhhcccCceecchhh
Q 000404 1079 TWTSVFGFQPLEVSS 1093 (1562)
Q Consensus 1079 ~Wt~kFGF~~me~~e 1093 (1562)
+|+ ++||.......
T Consensus 130 ~y~-k~GF~~~g~~~ 143 (162)
T PRK10140 130 VYK-KYGFEIEGTGK 143 (162)
T ss_pred HHH-HCCCEEEeecc
Confidence 999 99999875433
No 35
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.69 E-value=1.7e-05 Score=98.79 Aligned_cols=50 Identities=42% Similarity=1.179 Sum_probs=43.6
Q ss_pred CCCcccccceeCCCCceEecccCCCcCCcCcCC--CCCCCCCCeeccccccc
Q 000404 807 EDPNDDTCGICGDGGDLICCDGCPSTFHQNCLD--IKKFPSGKWHCVYCSCQ 856 (1562)
Q Consensus 807 dD~ndd~C~VCgdGGeLLcCD~CPraFH~~CL~--L~evPeGdW~Cp~C~C~ 856 (1562)
++.+...|.+|+++|++||||.|+.+||.+|++ +...|.+.|.|+.|.|.
T Consensus 43 ~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 43 DDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred chhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 355677899999999999999999999999997 56778888999988654
No 36
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.69 E-value=2.4e-05 Score=100.62 Aligned_cols=58 Identities=36% Similarity=0.871 Sum_probs=48.3
Q ss_pred CCcccccceeCCCC-----ceEecccCCCcCCcCcCCCCCCCCCCeeccccc--------cccccCcCCcc
Q 000404 808 DPNDDTCGICGDGG-----DLICCDGCPSTFHQNCLDIKKFPSGKWHCVYCS--------CQFCGRINEST 865 (1562)
Q Consensus 808 D~ndd~C~VCgdGG-----eLLcCD~CPraFH~~CL~L~evPeGdW~Cp~C~--------C~~CGk~~g~~ 865 (1562)
...|..|.||.++. .+|+||.|..++|+.|.+..-+|+|.|+|..|. |-.|-...+..
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAF 286 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAF 286 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcc
Confidence 34567899999753 499999999999999999999999999999994 77776655543
No 37
>PRK09831 putative acyltransferase; Provisional
Probab=97.66 E-value=0.0001 Score=73.97 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=60.3
Q ss_pred EEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCcee
Q 000404 1009 TAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQP 1088 (1562)
Q Consensus 1009 caVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~ 1088 (1562)
.+|...++++|+.+.+.. ..+..+.+.++|||||+|+.||+.+++.+.. |.+.+...|+.||. +|||..
T Consensus 55 ~~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~-k~Gf~~ 123 (147)
T PRK09831 55 VRVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFE-RYGFQT 123 (147)
T ss_pred eEEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHH-HCCCEE
Confidence 345578899999887631 4566799999999999999999999998765 56667788999999 999999
Q ss_pred cchhh
Q 000404 1089 LEVSS 1093 (1562)
Q Consensus 1089 me~~e 1093 (1562)
+....
T Consensus 124 ~g~~~ 128 (147)
T PRK09831 124 VKQQR 128 (147)
T ss_pred eeccc
Confidence 86543
No 38
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=97.64 E-value=0.00015 Score=80.04 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=67.0
Q ss_pred cccEEEEEeeCCEEEEEEEEEEeCc--ceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccc---hhhHHh
Q 000404 1005 KGFFTAILERDDEIISAASIRIHGK--ELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAI---SELRET 1079 (1562)
Q Consensus 1005 ~GfYcaVLe~gdeIVSaASIRI~G~--~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~---~eAv~~ 1079 (1562)
.++|.++-..++++|+.+.+.+... ..+++-.+++.++|||||+|+.||..+++.+...|+..+++... ..++.|
T Consensus 198 ~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~ 277 (292)
T TIGR03448 198 AGLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRT 277 (292)
T ss_pred CceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 3444433223689999877666542 36788888999999999999999999999999999888777654 468999
Q ss_pred hhcccCceecc
Q 000404 1080 WTSVFGFQPLE 1090 (1562)
Q Consensus 1080 Wt~kFGF~~me 1090 (1562)
|. ++||....
T Consensus 278 y~-k~GF~~~~ 287 (292)
T TIGR03448 278 YE-KLGFTVAE 287 (292)
T ss_pred HH-HcCCEEcc
Confidence 99 89998764
No 39
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=97.63 E-value=0.00017 Score=79.46 Aligned_cols=82 Identities=15% Similarity=0.097 Sum_probs=64.8
Q ss_pred cEEEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccc-hhhHHhhhcccC
Q 000404 1007 FFTAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAI-SELRETWTSVFG 1085 (1562)
Q Consensus 1007 fYcaVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~-~eAv~~Wt~kFG 1085 (1562)
.+.++...++++|+.+.+.......+++-.+++.++|||||+|+.||+.+++... +.-.|++... ..|..||. ++|
T Consensus 46 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~-~~G 122 (292)
T TIGR03448 46 TRHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALAS-RLG 122 (292)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHH-HCC
Confidence 3455666789999999988765455678888999999999999999999999865 3345555543 57899999 899
Q ss_pred ceecch
Q 000404 1086 FQPLEV 1091 (1562)
Q Consensus 1086 F~~me~ 1091 (1562)
|..+..
T Consensus 123 f~~~~~ 128 (292)
T TIGR03448 123 LVPTRE 128 (292)
T ss_pred CEEccE
Confidence 987743
No 40
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.59 E-value=2.4e-05 Score=96.29 Aligned_cols=55 Identities=31% Similarity=0.901 Sum_probs=46.9
Q ss_pred CcccccceeCCC-----CceEecccCCCcCCcCcCCCCCCCCCCeeccccc------cccccCcCC
Q 000404 809 PNDDTCGICGDG-----GDLICCDGCPSTFHQNCLDIKKFPSGKWHCVYCS------CQFCGRINE 863 (1562)
Q Consensus 809 ~ndd~C~VCgdG-----GeLLcCD~CPraFH~~CL~L~evPeGdW~Cp~C~------C~~CGk~~g 863 (1562)
+++-.|-||..+ .+|++||.|....|+.|.++.++|+|.|.|..|. |-.|.+.++
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGG 334 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGG 334 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCC
Confidence 466789999865 4699999999999999999999999999999994 666766554
No 41
>PRK13688 hypothetical protein; Provisional
Probab=97.59 E-value=0.00022 Score=74.70 Aligned_cols=75 Identities=17% Similarity=0.289 Sum_probs=57.7
Q ss_pred EeeCCEEEEEEEEEEe----------CcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhh
Q 000404 1012 LERDDEIISAASIRIH----------GKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWT 1081 (1562)
Q Consensus 1012 Le~gdeIVSaASIRI~----------G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt 1081 (1562)
+..++++|+.+.+... ....++|--+++.+.|||||+|+.||+.+++. ++. +++.+...+..||.
T Consensus 50 ~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~~----~~~-~~~~~~~~a~~FY~ 124 (156)
T PRK13688 50 IYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKSF----QLP-IKTIARNKSKDFWL 124 (156)
T ss_pred EEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHh----CCe-EEEEeccchHHHHH
Confidence 4468899988877432 23568999999999999999999999976653 333 34456677899999
Q ss_pred cccCceecchh
Q 000404 1082 SVFGFQPLEVS 1092 (1562)
Q Consensus 1082 ~kFGF~~me~~ 1092 (1562)
++||..+...
T Consensus 125 -k~GF~~~~~~ 134 (156)
T PRK13688 125 -KLGFTPVEYK 134 (156)
T ss_pred -hCCCEEeEEe
Confidence 9999988543
No 42
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.57 E-value=1.9e-05 Score=67.59 Aligned_cols=42 Identities=43% Similarity=1.149 Sum_probs=34.8
Q ss_pred ccceeCC---CCceEecccCCCcCCcCcCCCC----CCCCCCeeccccc
Q 000404 813 TCGICGD---GGDLICCDGCPSTFHQNCLDIK----KFPSGKWHCVYCS 854 (1562)
Q Consensus 813 ~C~VCgd---GGeLLcCD~CPraFH~~CL~L~----evPeGdW~Cp~C~ 854 (1562)
+|.+|+. .++||.|+.|.+.||..|+++. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4778886 6679999999999999999854 3345699999985
No 43
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.55 E-value=2.8e-05 Score=95.79 Aligned_cols=43 Identities=37% Similarity=0.948 Sum_probs=37.4
Q ss_pred cccceeCCCC---ceEecccCCCc-CCcCcCC--CCCCCCCCeeccccc
Q 000404 812 DTCGICGDGG---DLICCDGCPST-FHQNCLD--IKKFPSGKWHCVYCS 854 (1562)
Q Consensus 812 d~C~VCgdGG---eLLcCD~CPra-FH~~CL~--L~evPeGdW~Cp~C~ 854 (1562)
.-|.+|+... -||+||.|..+ ||++||+ +.++|-+.|||.+|.
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcch
Confidence 4599998643 39999999998 9999998 567999999999995
No 44
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.54 E-value=4.4e-05 Score=93.19 Aligned_cols=44 Identities=39% Similarity=1.100 Sum_probs=36.5
Q ss_pred ccccceeCCCCceEecccCCCcCCcCcCCCC---CCCCCCeeccccc
Q 000404 811 DDTCGICGDGGDLICCDGCPSTFHQNCLDIK---KFPSGKWHCVYCS 854 (1562)
Q Consensus 811 dd~C~VCgdGGeLLcCD~CPraFH~~CL~L~---evPeGdW~Cp~C~ 854 (1562)
-..|.+|..+|+++||+.|+.+||..|.... ..+.+.|.|..|.
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~ 93 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCP 93 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCC
Confidence 4679999999999999999999999999832 3344678888884
No 45
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=97.53 E-value=0.0005 Score=68.37 Aligned_cols=75 Identities=23% Similarity=0.347 Sum_probs=62.5
Q ss_pred eCCEEEEEEEEEEeC--cceeeeccccccccccccChhHHHHHHHHHHh-hhCCceEEEEccc---hhhHHhhhcccCce
Q 000404 1014 RDDEIISAASIRIHG--KELAEMPFIGTRHMYRRQGMCRRLLTGIESAL-CSLNVEKLIIPAI---SELRETWTSVFGFQ 1087 (1562)
Q Consensus 1014 ~gdeIVSaASIRI~G--~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L-~sLgVerLVLPA~---~eAv~~Wt~kFGF~ 1087 (1562)
.++++|+.+.++-.. ...+++-++-. +.||++|+|+.|+..|++.+ ..+|+++|.+-.. ..++.+|+ ++||.
T Consensus 58 ~~g~iiG~~~~~~~~~~~~~~~~~~~v~-~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~-~~GF~ 135 (155)
T PF13420_consen 58 EDGKIIGYVSLRDIDPYNHTAELSIYVS-PDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYK-KLGFE 135 (155)
T ss_dssp CTTEEEEEEEEEESSSGTTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHH-HTTEE
T ss_pred cCCcEEEEEEEEeeeccCCEEEEeeEEC-hhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHH-hCCCE
Confidence 599999999998544 46788875444 99999999999999999999 9999999986554 45899999 89999
Q ss_pred ecc
Q 000404 1088 PLE 1090 (1562)
Q Consensus 1088 ~me 1090 (1562)
..-
T Consensus 136 ~~g 138 (155)
T PF13420_consen 136 EEG 138 (155)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 47
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=97.52 E-value=0.00024 Score=73.06 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=64.1
Q ss_pred EEEEEe-eCCEEEEEEEEEEe--CcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEcc---chhhHHhhh
Q 000404 1008 FTAILE-RDDEIISAASIRIH--GKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPA---ISELRETWT 1081 (1562)
Q Consensus 1008 YcaVLe-~gdeIVSaASIRI~--G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA---~~eAv~~Wt 1081 (1562)
+++|.+ .++++|+.+..... ....+.+-.+++.+.|||||+|+.||..+++.+...++.+|.+-. -..|..+|+
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 455656 47799998865332 235678889999999999999999999999998888888877654 456889999
Q ss_pred cccCcee
Q 000404 1082 SVFGFQP 1088 (1562)
Q Consensus 1082 ~kFGF~~ 1088 (1562)
+|||..
T Consensus 120 -k~G~~~ 125 (157)
T TIGR02406 120 -ALARRR 125 (157)
T ss_pred -HhCccc
Confidence 899987
No 48
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.49 E-value=2.5e-05 Score=99.11 Aligned_cols=104 Identities=26% Similarity=0.488 Sum_probs=72.5
Q ss_pred CCcccccceeCCCCceEecccCCCcCCcCcCC--CCCCCCCCeeccccc-cccccCcCCcc-------cccCCC------
Q 000404 808 DPNDDTCGICGDGGDLICCDGCPSTFHQNCLD--IKKFPSGKWHCVYCS-CQFCGRINEST-------CHVNDQ------ 871 (1562)
Q Consensus 808 D~ndd~C~VCgdGGeLLcCD~CPraFH~~CL~--L~evPeGdW~Cp~C~-C~~CGk~~g~~-------C~r~~n------ 871 (1562)
-.-++.|.+|.+.|+++||..||+.||..|.. +..+|...|.|..|. |+.=+.+.... -.++..
T Consensus 341 ~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr~ 420 (1414)
T KOG1473|consen 341 IEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDRY 420 (1414)
T ss_pred eeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccCCCcCcc
Confidence 34567899999999999999999999999997 567899999999985 32211111000 001100
Q ss_pred ------------CCccccccccccc-ccccccC-CCCCCCCCCcccCCCccccc
Q 000404 872 ------------DDSALSTLQICSL-CEEKYHQ-SCSQTDGAVQYEPSSLSFCG 911 (1562)
Q Consensus 872 ------------~~~sd~tLL~CDQ-CER~YHv-sCLrp~~~L~evPeg~WFCs 911 (1562)
...-+.+.+-|+. |...||. .|+.........+.+.|+|.
T Consensus 421 gr~ywfi~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ 474 (1414)
T KOG1473|consen 421 GRKYWFISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERR 474 (1414)
T ss_pred ccchhceeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhH
Confidence 0112456666776 9999999 99985433446788999996
No 49
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=97.47 E-value=0.00034 Score=70.63 Aligned_cols=76 Identities=16% Similarity=0.335 Sum_probs=62.4
Q ss_pred EEEEEEEEE-EeCcc----eeeeccccccccccccChhHHHHHHHHHHhhhCCc-eEEEEccch---hhHHhhhcccCce
Q 000404 1017 EIISAASIR-IHGKE----LAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNV-EKLIIPAIS---ELRETWTSVFGFQ 1087 (1562)
Q Consensus 1017 eIVSaASIR-I~G~~----vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgV-erLVLPA~~---eAv~~Wt~kFGF~ 1087 (1562)
++++....+ +.|.. .++|-.+|+.++|||||+|+.|++.+++.+...+. +.++|-++. .|+.+|+ ++||.
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~-~~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYR-KLGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHH-HcCCE
Confidence 477777665 44432 78999999999999999999999999999999886 777777774 4899999 89999
Q ss_pred ecchhh
Q 000404 1088 PLEVSS 1093 (1562)
Q Consensus 1088 ~me~~e 1093 (1562)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 875443
No 50
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=97.45 E-value=0.00043 Score=56.09 Aligned_cols=61 Identities=25% Similarity=0.317 Sum_probs=54.1
Q ss_pred EEEeeCCEEEEEEEEEEeC--cceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEE
Q 000404 1010 AILERDDEIISAASIRIHG--KELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLII 1070 (1562)
Q Consensus 1010 aVLe~gdeIVSaASIRI~G--~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVL 1070 (1562)
.++..++++|+.+.+.... ...+++-.+++.+.|||+|+++.||..+.+.+...+..++++
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3455778999999987765 478999999999999999999999999999999999999876
No 51
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.38 E-value=0.00048 Score=84.59 Aligned_cols=85 Identities=11% Similarity=0.143 Sum_probs=67.3
Q ss_pred cccEEEEEee--CCEEEEEEEEEEeC------cceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccc---
Q 000404 1005 KGFFTAILER--DDEIISAASIRIHG------KELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAI--- 1073 (1562)
Q Consensus 1005 ~GfYcaVLe~--gdeIVSaASIRI~G------~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~--- 1073 (1562)
.+.+.+|.+. ++++|+.+....+. ...+++--+++.++|||||+|+.||..+++.++..|+.+++|...
T Consensus 121 ~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N 200 (547)
T TIGR03103 121 RAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDN 200 (547)
T ss_pred CCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCC
Confidence 3444555553 68999998753221 234677789999999999999999999999999999999876544
Q ss_pred hhhHHhhhcccCceecc
Q 000404 1074 SELRETWTSVFGFQPLE 1090 (1562)
Q Consensus 1074 ~eAv~~Wt~kFGF~~me 1090 (1562)
..|+.||. +|||..+.
T Consensus 201 ~~Ai~fY~-klGf~~~~ 216 (547)
T TIGR03103 201 EQAIALYE-KLGFRRIP 216 (547)
T ss_pred HHHHHHHH-HCCCEEee
Confidence 67899999 89999874
No 52
>PRK01346 hypothetical protein; Provisional
Probab=97.35 E-value=0.00053 Score=79.99 Aligned_cols=82 Identities=18% Similarity=0.172 Sum_probs=67.7
Q ss_pred EEEEeeCCEEEEEEEEEEe------Cc--ceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhh
Q 000404 1009 TAILERDDEIISAASIRIH------GK--ELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETW 1080 (1562)
Q Consensus 1009 caVLe~gdeIVSaASIRI~------G~--~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~W 1080 (1562)
+.+...++++|+.+.+..+ |. ..+.|--|+|.++|||||+|+.||..+++.++..|+..++|-+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 4566688999998876432 32 468889999999999999999999999999999999988887665 4789
Q ss_pred hcccCceecchhh
Q 000404 1081 TSVFGFQPLEVSS 1093 (1562)
Q Consensus 1081 t~kFGF~~me~~e 1093 (1562)
. +|||.......
T Consensus 127 ~-r~Gf~~~~~~~ 138 (411)
T PRK01346 127 G-RFGYGPATYSQ 138 (411)
T ss_pred h-hCCCeeccceE
Confidence 9 89999876543
No 53
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.27 E-value=0.00062 Score=71.05 Aligned_cols=114 Identities=17% Similarity=0.226 Sum_probs=88.1
Q ss_pred hhhcchhhhHhhhcccccCCCCCCCCCCCcchhHHhhccCCCCccccccc-cEEEEEee--CCEEEEEEEEEE-----eC
Q 000404 957 KVECNARLAVALSVMDECFLPLPDHRSGINLIHNILYNFGSNFKRLNYKG-FFTAILER--DDEIISAASIRI-----HG 1028 (1562)
Q Consensus 957 ~~EcNSKLAVALsIm~ECFdPIvD~rSGiDLIpdMVYnrGSnfkRLDF~G-fYcaVLe~--gdeIVSaASIRI-----~G 1028 (1562)
.+++-+.|.....|-.|.|+.-++. |- .+.- +|.+|++. .++||++|++-| ||
T Consensus 21 f~elL~qLT~vG~vt~e~F~krf~~---------mk----------~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~ 81 (150)
T KOG3396|consen 21 FIELLKQLTSVGVVTREQFEKRFEA---------MK----------KSGDWYYIVVIEDKESEKVIGTATLFIERKFIHG 81 (150)
T ss_pred HHHHHHHHhhccccCHHHHHHHHHH---------HH----------hcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhc
Confidence 4556667777777777777642221 11 1122 67777774 479999999976 44
Q ss_pred -cceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCceecc
Q 000404 1029 -KELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQPLE 1090 (1562)
Q Consensus 1029 -~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~me 1090 (1562)
..-..+-=|.....||||++|+.|+..|-.+..++|+..+.|.-.++.+.||. +|||+.-.
T Consensus 82 ~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~FYe-KcG~s~~~ 143 (150)
T KOG3396|consen 82 CGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVKFYE-KCGYSNAG 143 (150)
T ss_pred ccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhhHHH-HcCccccc
Confidence 23345667889999999999999999999999999999999999999999999 99998765
No 54
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=97.24 E-value=0.00015 Score=77.32 Aligned_cols=84 Identities=29% Similarity=0.727 Sum_probs=56.6
Q ss_pred cceeCC------CCceEecccCCCcCCcCcCCC--------CCCCCCC--eeccccc---------------cccccCcC
Q 000404 814 CGICGD------GGDLICCDGCPSTFHQNCLDI--------KKFPSGK--WHCVYCS---------------CQFCGRIN 862 (1562)
Q Consensus 814 C~VCgd------GGeLLcCD~CPraFH~~CL~L--------~evPeGd--W~Cp~C~---------------C~~CGk~~ 862 (1562)
|.+|+. -|.|+.|.+|..+||..||+. ..|-.++ ..|.+|. |..|...+
T Consensus 2 C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~G 81 (175)
T PF15446_consen 2 CDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKPG 81 (175)
T ss_pred cccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCCC
Confidence 777753 356999999999999999982 3344444 4677774 55665433
Q ss_pred Ccccc--------------cCCCC-------------CcccccccccccccccccCCCCCCCC
Q 000404 863 ESTCH--------------VNDQD-------------DSALSTLQICSLCEEKYHQSCSQTDG 898 (1562)
Q Consensus 863 g~~C~--------------r~~n~-------------~~sd~tLL~CDQCER~YHvsCLrp~~ 898 (1562)
.. |. +..|. ...+..|+.|..|.|+||...|++..
T Consensus 82 ~~-c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 82 PS-CKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred CC-CcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 21 10 00110 12467789999999999999999853
No 55
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.24 E-value=0.00012 Score=83.03 Aligned_cols=43 Identities=40% Similarity=0.928 Sum_probs=37.9
Q ss_pred cccceeCCCCceEeccc--CC-CcCCcCcCCCCCCCCCCeecccccc
Q 000404 812 DTCGICGDGGDLICCDG--CP-STFHQNCLDIKKFPSGKWHCVYCSC 855 (1562)
Q Consensus 812 d~C~VCgdGGeLLcCD~--CP-raFH~~CL~L~evPeGdW~Cp~C~C 855 (1562)
.+|. |...|+|+-||. |+ .-||..|++|...|.|.|||+.|.-
T Consensus 222 C~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 222 CICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKA 267 (274)
T ss_pred EEec-ccccccccccCCCCCCcceEEEeccccccCCCCcccchhhhh
Confidence 3455 667899999997 99 8999999999999999999998853
No 56
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.23 E-value=0.00019 Score=80.46 Aligned_cols=45 Identities=36% Similarity=0.923 Sum_probs=38.7
Q ss_pred CcccccceeCC--CCceEeccc--CCC-cCCcCcCCCCCCCCCCeeccccc
Q 000404 809 PNDDTCGICGD--GGDLICCDG--CPS-TFHQNCLDIKKFPSGKWHCVYCS 854 (1562)
Q Consensus 809 ~ndd~C~VCgd--GGeLLcCD~--CPr-aFH~~CL~L~evPeGdW~Cp~C~ 854 (1562)
.+.-+|+ |.+ -|+|+-||. |.+ -||+.|++|...|.|.|||+.|.
T Consensus 219 ~e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk 268 (271)
T COG5034 219 GEELYCF-CQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECK 268 (271)
T ss_pred CceeEEE-ecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhH
Confidence 3455787 886 489999994 986 89999999999999999999995
No 57
>PRK10514 putative acetyltransferase; Provisional
Probab=97.15 E-value=0.0015 Score=64.56 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=56.8
Q ss_pred EEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCceecc
Q 000404 1011 ILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQPLE 1090 (1562)
Q Consensus 1011 VLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~me 1090 (1562)
+++.++++|+...+. . .++--+++.++|||||+|+.||+.+++.+. .+...+...-..+..+|. ++||....
T Consensus 54 ~~~~~~~~iG~~~~~--~---~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~--~i~~~v~~~N~~a~~~ye-k~Gf~~~~ 125 (145)
T PRK10514 54 AVDERDQPVGFMLLS--G---GHMEALFVDPDVRGCGVGRMLVEHALSLHP--ELTTDVNEQNEQAVGFYK-KMGFKVTG 125 (145)
T ss_pred EEecCCcEEEEEEEe--c---CcEeEEEECHHhccCCHHHHHHHHHHHhcc--ccEEEeecCCHHHHHHHH-HCCCEEec
Confidence 345678999987763 1 234468899999999999999999999754 344455566678999999 99999975
Q ss_pred hhh
Q 000404 1091 VSS 1093 (1562)
Q Consensus 1091 ~~e 1093 (1562)
...
T Consensus 126 ~~~ 128 (145)
T PRK10514 126 RSE 128 (145)
T ss_pred ccc
Confidence 443
No 58
>PRK10562 putative acetyltransferase; Provisional
Probab=97.11 E-value=0.0013 Score=65.60 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=57.2
Q ss_pred EEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCcee
Q 000404 1009 TAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQP 1088 (1562)
Q Consensus 1009 caVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~ 1088 (1562)
..++..++++|+.+.+.. ...+..+++.++|||+|+|+.||..+++.+..+ ...+...-..+..||+ ++||..
T Consensus 50 ~~v~~~~~~~iG~~~~~~----~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~--~~~v~~~N~~s~~~y~-k~Gf~~ 122 (145)
T PRK10562 50 TWVWEEDGKLLGFVSVLE----GRFVGALFVAPKAVRRGIGKALMQHVQQRYPHL--SLEVYQKNQRAVNFYH-AQGFRI 122 (145)
T ss_pred EEEEEECCEEEEEEEEee----ccEEEEEEECHHHcCCCHHHHHHHHHHhhCCeE--EEEEEcCChHHHHHHH-HCCCEE
Confidence 345566789999888743 235667899999999999999999999965433 2233455567899999 999999
Q ss_pred cc
Q 000404 1089 LE 1090 (1562)
Q Consensus 1089 me 1090 (1562)
+.
T Consensus 123 ~~ 124 (145)
T PRK10562 123 VD 124 (145)
T ss_pred cc
Confidence 85
No 59
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.09 E-value=0.0024 Score=66.15 Aligned_cols=82 Identities=18% Similarity=0.125 Sum_probs=65.7
Q ss_pred EEEEEeeCCEEEEEEEEEEeC--cceeeeccccccccccccChhHHHHHHHHHHhh-hCCceEEEEccc---hhhHHhhh
Q 000404 1008 FTAILERDDEIISAASIRIHG--KELAEMPFIGTRHMYRRQGMCRRLLTGIESALC-SLNVEKLIIPAI---SELRETWT 1081 (1562)
Q Consensus 1008 YcaVLe~gdeIVSaASIRI~G--~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~-sLgVerLVLPA~---~eAv~~Wt 1081 (1562)
+..+++.++++|+.+.+.... ...+++- ++..+.|||+|+|+.|+..+.+... .+++++|++-+. ..++.+|.
T Consensus 58 ~~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~ye 136 (186)
T PRK15130 58 RRFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR 136 (186)
T ss_pred cEEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHH
Confidence 345667899999999875543 3456775 7888999999999999999988665 699999988654 46899999
Q ss_pred cccCceecch
Q 000404 1082 SVFGFQPLEV 1091 (1562)
Q Consensus 1082 ~kFGF~~me~ 1091 (1562)
++||.....
T Consensus 137 -k~GF~~~~~ 145 (186)
T PRK15130 137 -KLGFEVEGE 145 (186)
T ss_pred -HCCCEEEEE
Confidence 899998744
No 60
>PHA01807 hypothetical protein
Probab=97.09 E-value=0.0013 Score=69.16 Aligned_cols=76 Identities=12% Similarity=0.144 Sum_probs=59.8
Q ss_pred cEEEEEeeCCEEEEEEEEEEeCc-ceee---eccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchh---hHHh
Q 000404 1007 FFTAILERDDEIISAASIRIHGK-ELAE---MPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISE---LRET 1079 (1562)
Q Consensus 1007 fYcaVLe~gdeIVSaASIRI~G~-~vAE---MPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~e---Av~~ 1079 (1562)
.+..+.+.++++|+.+++..... ..++ |-.+.+.++|||+|+|+.||+.+++.++..|+..|++-...+ |+.+
T Consensus 53 ~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~ 132 (153)
T PHA01807 53 RTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIH 132 (153)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHH
Confidence 33455677999999999865442 2233 333689999999999999999999999999999998877654 7789
Q ss_pred hhc
Q 000404 1080 WTS 1082 (1562)
Q Consensus 1080 Wt~ 1082 (1562)
|..
T Consensus 133 y~~ 135 (153)
T PHA01807 133 YRR 135 (153)
T ss_pred HHh
Confidence 984
No 61
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=97.08 E-value=0.0014 Score=69.08 Aligned_cols=85 Identities=20% Similarity=0.242 Sum_probs=68.5
Q ss_pred cEEEEEeeCCEEEEEEEEEEeCcceee--eccccccccccccChhHHHHH-HHHHHhhhCCceEEEEccchhhHHhhhcc
Q 000404 1007 FFTAILERDDEIISAASIRIHGKELAE--MPFIGTRHMYRRQGMCRRLLT-GIESALCSLNVEKLIIPAISELRETWTSV 1083 (1562)
Q Consensus 1007 fYcaVLe~gdeIVSaASIRI~G~~vAE--MPLVATr~~yRrQGmcR~Lm~-~IE~~L~sLgVerLVLPA~~eAv~~Wt~k 1083 (1562)
..-.+++.++++|+.|.+---+....+ |.-|+|.+++||+|+|+.||. +||.......=+-++|.|-.-+..||. .
T Consensus 50 ~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa-~ 128 (155)
T COG2153 50 RHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYA-S 128 (155)
T ss_pred ceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHH-H
Confidence 445667779999988866544545555 888999999999999999996 566666666677799999999999999 8
Q ss_pred cCceecchh
Q 000404 1084 FGFQPLEVS 1092 (1562)
Q Consensus 1084 FGF~~me~~ 1092 (1562)
|||.++.+.
T Consensus 129 ~GFv~~~e~ 137 (155)
T COG2153 129 FGFVRVGEE 137 (155)
T ss_pred hCcEEcCch
Confidence 999999654
No 62
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.08 E-value=0.0016 Score=61.92 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=55.1
Q ss_pred EEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEcc--chhhHHhhhcccCceecc
Q 000404 1017 EIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPA--ISELRETWTSVFGFQPLE 1090 (1562)
Q Consensus 1017 eIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA--~~eAv~~Wt~kFGF~~me 1090 (1562)
+.++.++-.+.... ++|--+.|.++|||+|+|+.|+.+|.+.+..-|..-++.-. -..+..+|+ ++||..+.
T Consensus 8 ~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~-klGf~~~~ 81 (86)
T PF08445_consen 8 ELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYE-KLGFREIE 81 (86)
T ss_dssp CCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHH-HCT-EEEE
T ss_pred CccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH-HcCCEEEE
Confidence 55555555555544 99999999999999999999999999988888877654432 346889999 89999874
No 63
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.06 E-value=0.0015 Score=74.89 Aligned_cols=81 Identities=12% Similarity=0.048 Sum_probs=68.3
Q ss_pred ccEEEEEee---CCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccc-----hhhH
Q 000404 1006 GFFTAILER---DDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAI-----SELR 1077 (1562)
Q Consensus 1006 GfYcaVLe~---gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~-----~eAv 1077 (1562)
..|++.+.. ++.+|+.+.++..+ ..++|-.++..+.|||+|+|+.||..+++.+...|+..|++... ..|.
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~~~-~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~ 308 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEKKE-GNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFL 308 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEecC-CcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHH
Confidence 355555543 56899999987754 56789999999999999999999999999999999999988654 4699
Q ss_pred HhhhcccCcee
Q 000404 1078 ETWTSVFGFQP 1088 (1562)
Q Consensus 1078 ~~Wt~kFGF~~ 1088 (1562)
.||. ++||..
T Consensus 309 ~fY~-~~GF~~ 318 (320)
T TIGR01686 309 SFYE-QIGFED 318 (320)
T ss_pred HHHH-HcCCcc
Confidence 9999 899984
No 64
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.04 E-value=0.00024 Score=85.25 Aligned_cols=103 Identities=20% Similarity=0.307 Sum_probs=68.8
Q ss_pred cccceeCC-----CCceEecccCCCcCCcCcCCCCCCCCCCeecccccccccc---------CcC------C--------
Q 000404 812 DTCGICGD-----GGDLICCDGCPSTFHQNCLDIKKFPSGKWHCVYCSCQFCG---------RIN------E-------- 863 (1562)
Q Consensus 812 d~C~VCgd-----GGeLLcCD~CPraFH~~CL~L~evPeGdW~Cp~C~C~~CG---------k~~------g-------- 863 (1562)
..|.+|.. +.++..|+.|.++||+.|......-.+.|.|..|.-..-- ... .
T Consensus 84 ~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~wD~ 163 (464)
T KOG4323|consen 84 LNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLDWDS 163 (464)
T ss_pred cCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCcccccccCc
Confidence 34777764 3458899999999999999655555678999987532210 000 0
Q ss_pred -----cccccCCCC-CcccccccccccccccccCCCCCCCC--CCcccCCCcccccccc
Q 000404 864 -----STCHVNDQD-DSALSTLQICSLCEEKYHQSCSQTDG--AVQYEPSSLSFCGKKC 914 (1562)
Q Consensus 864 -----~~C~r~~n~-~~sd~tLL~CDQCER~YHvsCLrp~~--~L~evPeg~WFCsk~C 914 (1562)
-.|..|+.+ ......|+.|+.|..|||.-|..+.. .+...|.+.|||..+|
T Consensus 164 ~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~ 222 (464)
T KOG4323|consen 164 GHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCN 222 (464)
T ss_pred cccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhc
Confidence 013333321 12344899999999999999999853 2345688999997443
No 65
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.03 E-value=0.00023 Score=60.92 Aligned_cols=40 Identities=25% Similarity=0.557 Sum_probs=31.3
Q ss_pred ccccccccccccccccCCCCCCCCCCcccCCCccccccccH
Q 000404 875 ALSTLQICSLCEEKYHQSCSQTDGAVQYEPSSLSFCGKKCQ 915 (1562)
Q Consensus 875 sd~tLL~CDQCER~YHvsCLrp~~~L~evPeg~WFCsk~Cq 915 (1562)
....++.|+.|.++||..|+.+.......+...|+|+ .|.
T Consensus 10 ~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~-~C~ 49 (51)
T PF00628_consen 10 DDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCP-NCR 49 (51)
T ss_dssp TTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSH-HHH
T ss_pred CCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECc-CCc
Confidence 3567899999999999999998754444555699996 554
No 66
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.01 E-value=0.00033 Score=87.78 Aligned_cols=80 Identities=25% Similarity=0.619 Sum_probs=55.8
Q ss_pred cCCCcCCcCcCC--CCCCCCCCeecccccccc----ccCc-----CCcccccCCCCCcccccccccccccccccCCCCCC
Q 000404 828 GCPSTFHQNCLD--IKKFPSGKWHCVYCSCQF----CGRI-----NESTCHVNDQDDSALSTLQICSLCEEKYHQSCSQT 896 (1562)
Q Consensus 828 ~CPraFH~~CL~--L~evPeGdW~Cp~C~C~~----CGk~-----~g~~C~r~~n~~~sd~tLL~CDQCER~YHvsCLrp 896 (1562)
.|+|.||..|+. +...|+++|.|+.|.-.. +... ....|..| ...+.++.|+.|..+||.+|+.+
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic----~~~g~~l~c~tC~~s~h~~cl~~ 76 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRIC----ADGGELLWCDTCPASFHASCLGP 76 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccCCcchhhhhhhhhh----cCCCcEEEeccccHHHHHHccCC
Confidence 489999999997 566678999999994211 1000 00112222 23556788999999999999987
Q ss_pred CCCCcccCCCcccccccc
Q 000404 897 DGAVQYEPSSLSFCGKKC 914 (1562)
Q Consensus 897 ~~~L~evPeg~WFCsk~C 914 (1562)
+ +...|.+.|.|+ -|
T Consensus 77 p--l~~~p~~~~~c~-Rc 91 (696)
T KOG0383|consen 77 P--LTPQPNGEFICP-RC 91 (696)
T ss_pred C--CCcCCccceeee-ee
Confidence 4 556777779998 55
No 67
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=96.99 E-value=0.0017 Score=73.70 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=68.0
Q ss_pred cEEEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCC-ceEEEEccc-hhhHHhhhccc
Q 000404 1007 FFTAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLN-VEKLIIPAI-SELRETWTSVF 1084 (1562)
Q Consensus 1007 fYcaVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLg-VerLVLPA~-~eAv~~Wt~kF 1084 (1562)
+.+..|+-+|+||+.|+..-++...|++-.|.|.|+|||+||+.+|+..|-..|-.-| .-.|.+.++ +.|-.+|. +.
T Consensus 177 ~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~-ri 255 (268)
T COG3393 177 SRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQ-RI 255 (268)
T ss_pred eeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHH-Hh
Confidence 4455667777999999999999999999999999999999999999999977555555 445555544 56789999 89
Q ss_pred Cceec
Q 000404 1085 GFQPL 1089 (1562)
Q Consensus 1085 GF~~m 1089 (1562)
||..+
T Consensus 256 GF~~~ 260 (268)
T COG3393 256 GFREI 260 (268)
T ss_pred CCeec
Confidence 99876
No 68
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.94 E-value=0.0003 Score=87.28 Aligned_cols=41 Identities=24% Similarity=0.590 Sum_probs=33.6
Q ss_pred ccccccccccccc-ccCCCCCCCCCCcccCCCccccccccHHHHH
Q 000404 876 LSTLQICSLCEEK-YHQSCSQTDGAVQYEPSSLSFCGKKCQEIFE 919 (1562)
Q Consensus 876 d~tLL~CDQCER~-YHvsCLrp~~~L~evPeg~WFCsk~CqeI~e 919 (1562)
...||.|+.|... ||++||++. +.++|-..|||. +|..+..
T Consensus 227 EdVLLLCDsCN~~~YH~YCLDPd--l~eiP~~eWYC~-NC~dL~~ 268 (1134)
T KOG0825|consen 227 EDVLLLCDSCNKVYYHVYCLDPD--LSESPVNEWYCT-NCSLLEI 268 (1134)
T ss_pred HHhheeecccccceeeccccCcc--cccccccceecC-cchhhhh
Confidence 3468999999998 999999984 678899999996 7765543
No 69
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=96.93 E-value=0.0058 Score=61.28 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=67.6
Q ss_pred cccccEEEEEeeCCEEEEEEEEEE------eCcceeeeccccccccccccChhHHHHHHHHHHhhhC-CceEEEEccch-
Q 000404 1003 NYKGFFTAILERDDEIISAASIRI------HGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSL-NVEKLIIPAIS- 1074 (1562)
Q Consensus 1003 DF~GfYcaVLe~gdeIVSaASIRI------~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sL-gVerLVLPA~~- 1074 (1562)
.-.+.+..|...++++|+.+.+.- .....+.+-.+++.+.|||||+|+.+|.++.+.+..- +++++++....
T Consensus 44 ~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~ 123 (152)
T PF13523_consen 44 ADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHED 123 (152)
T ss_dssp HTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT
T ss_pred ccCCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcC
Confidence 356778899999999999887632 1235667878888999999999999999888877655 89999998876
Q ss_pred --hhHHhhhcccCceecc
Q 000404 1075 --ELRETWTSVFGFQPLE 1090 (1562)
Q Consensus 1075 --eAv~~Wt~kFGF~~me 1090 (1562)
-++.+++ ++||..+-
T Consensus 124 N~~~~~~~~-k~GF~~~g 140 (152)
T PF13523_consen 124 NTRAIRLYE-KAGFRKVG 140 (152)
T ss_dssp -HHHHHHHH-HTT-EEEE
T ss_pred CHHHHHHHH-HcCCEEee
Confidence 4788888 89999873
No 70
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=96.93 E-value=0.0047 Score=61.43 Aligned_cols=81 Identities=16% Similarity=0.118 Sum_probs=64.7
Q ss_pred EEEeeCCEEEEEEEEEEeC--cceeeeccccccccccccChhHHHHHHHHHHhh-hCCceEEEEc---cchhhHHhhhcc
Q 000404 1010 AILERDDEIISAASIRIHG--KELAEMPFIGTRHMYRRQGMCRRLLTGIESALC-SLNVEKLIIP---AISELRETWTSV 1083 (1562)
Q Consensus 1010 aVLe~gdeIVSaASIRI~G--~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~-sLgVerLVLP---A~~eAv~~Wt~k 1083 (1562)
.++..++++|+.+.+.... ...+++-++ ..+.|| +|||+.|+.++++.+. .+++.+|++. .-..++.++. +
T Consensus 54 ~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~-k 130 (156)
T TIGR03585 54 WIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYE-K 130 (156)
T ss_pred EEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHH-H
Confidence 4446789999999887655 456777766 788899 9999999999999876 5899999865 4456889999 9
Q ss_pred cCceecchhh
Q 000404 1084 FGFQPLEVSS 1093 (1562)
Q Consensus 1084 FGF~~me~~e 1093 (1562)
+||+.+....
T Consensus 131 ~Gf~~~g~~~ 140 (156)
T TIGR03585 131 FGFEREGVFR 140 (156)
T ss_pred cCCeEeeeeh
Confidence 9999875443
No 71
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=96.91 E-value=0.003 Score=67.57 Aligned_cols=87 Identities=14% Similarity=0.219 Sum_probs=69.1
Q ss_pred EEeeCCE--EEEEEEEEEeC---cceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccch---hhHHhhhc
Q 000404 1011 ILERDDE--IISAASIRIHG---KELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAIS---ELRETWTS 1082 (1562)
Q Consensus 1011 VLe~gde--IVSaASIRI~G---~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~---eAv~~Wt~ 1082 (1562)
+|..+++ .|+|+...... ..-++|-..|...+|||||+|.+|+..+.+..+..|+..+||.... .|+.+|+
T Consensus 59 ~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~- 137 (165)
T KOG3139|consen 59 FLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYE- 137 (165)
T ss_pred EEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHH-
Confidence 3444433 47777665433 2358999999999999999999999999999999999999998774 6999999
Q ss_pred ccCceecchhhHhhhc
Q 000404 1083 VFGFQPLEVSSKQKMR 1098 (1562)
Q Consensus 1083 kFGF~~me~~ek~elr 1098 (1562)
+|||..+-...+..+.
T Consensus 138 sLGF~r~~r~~~YYln 153 (165)
T KOG3139|consen 138 SLGFKRDKRLFRYYLN 153 (165)
T ss_pred hcCceEecceeEEEEC
Confidence 8999987665555443
No 72
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=96.85 E-value=0.0022 Score=78.75 Aligned_cols=76 Identities=21% Similarity=0.352 Sum_probs=61.5
Q ss_pred eCCEEEEEEEEEEeCccee-----------eeccccc--------cccccccChhHHHHHHHHHHhhhCCceEEEEccch
Q 000404 1014 RDDEIISAASIRIHGKELA-----------EMPFIGT--------RHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAIS 1074 (1562)
Q Consensus 1014 ~gdeIVSaASIRI~G~~vA-----------EMPLVAT--------r~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~ 1074 (1562)
.++.+|+-..+|+...... |+-..|+ .+.|||||+|+.||+++|+.++..|+..|+|.+-.
T Consensus 421 ~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~ 500 (522)
T TIGR01211 421 KNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGI 500 (522)
T ss_pred CCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCc
Confidence 4467777777776553222 5554444 57899999999999999999999999999999989
Q ss_pred hhHHhhhcccCceecc
Q 000404 1075 ELRETWTSVFGFQPLE 1090 (1562)
Q Consensus 1075 eAv~~Wt~kFGF~~me 1090 (1562)
.|..||. ++||....
T Consensus 501 ~A~~FY~-klGf~~~g 515 (522)
T TIGR01211 501 GVREYYR-KLGYELDG 515 (522)
T ss_pred hHHHHHH-HCCCEEEc
Confidence 9999999 99998753
No 73
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=96.68 E-value=0.0095 Score=57.94 Aligned_cols=72 Identities=21% Similarity=0.256 Sum_probs=58.5
Q ss_pred eCCEEEEEEEEEEe--CcceeeeccccccccccccChhHHHHHHHHHHh-hhCCceEEEEccchh---hHHhhhcccCce
Q 000404 1014 RDDEIISAASIRIH--GKELAEMPFIGTRHMYRRQGMCRRLLTGIESAL-CSLNVEKLIIPAISE---LRETWTSVFGFQ 1087 (1562)
Q Consensus 1014 ~gdeIVSaASIRI~--G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L-~sLgVerLVLPA~~e---Av~~Wt~kFGF~ 1087 (1562)
.++++|+...++.. ....+||. +...++|||+|+++.++..+...+ ..+++.++++...++ +..+.. +.||.
T Consensus 65 ~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~-k~GF~ 142 (142)
T PF13302_consen 65 DDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLE-KLGFE 142 (142)
T ss_dssp TTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHH-HTT-E
T ss_pred cCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHH-HcCCC
Confidence 34589999888443 36889999 568888999999999999999988 799999998887764 667777 88885
No 74
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=96.47 E-value=0.011 Score=61.91 Aligned_cols=82 Identities=12% Similarity=0.195 Sum_probs=63.9
Q ss_pred cEEEEEeeCCEEEEEEEEEEeC---cceeeeccccccccccccChhHHHHHHHHHHhhh-CCceEEEEccch---hhHHh
Q 000404 1007 FFTAILERDDEIISAASIRIHG---KELAEMPFIGTRHMYRRQGMCRRLLTGIESALCS-LNVEKLIIPAIS---ELRET 1079 (1562)
Q Consensus 1007 fYcaVLe~gdeIVSaASIRI~G---~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~s-LgVerLVLPA~~---eAv~~ 1079 (1562)
.|.+++..++++|+.+.+..+. ...+|+-+ ...+.|||||+++.++..+.+.+.. +|+.+|++...+ -+..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig~-~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLGY-SLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEEE-EECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 3444445578999999886543 24567664 4679999999999999999998765 899999888865 57889
Q ss_pred hhcccCceecc
Q 000404 1080 WTSVFGFQPLE 1090 (1562)
Q Consensus 1080 Wt~kFGF~~me 1090 (1562)
+. ++||....
T Consensus 156 ~e-k~Gf~~~g 165 (194)
T PRK10809 156 LA-RLGFEKEG 165 (194)
T ss_pred HH-HCCCcEEe
Confidence 99 89999653
No 75
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.15 E-value=0.0027 Score=72.35 Aligned_cols=35 Identities=23% Similarity=0.661 Sum_probs=28.7
Q ss_pred ccccccccc--cc-ccccCCCCCCCCCCcccCCCccccccccH
Q 000404 876 LSTLQICSL--CE-EKYHQSCSQTDGAVQYEPSSLSFCGKKCQ 915 (1562)
Q Consensus 876 d~tLL~CDQ--CE-R~YHvsCLrp~~~L~evPeg~WFCsk~Cq 915 (1562)
-+.|+.||. |+ .|||..|+.. ...|.+.|||+ .|.
T Consensus 229 yg~Mi~CDn~~C~~eWFH~~CVGL----~~~PkgkWyC~-~C~ 266 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIEWFHFTCVGL----KTKPKGKWYCP-RCK 266 (274)
T ss_pred cccccccCCCCCCcceEEEecccc----ccCCCCcccch-hhh
Confidence 346888997 99 8999999985 36789999998 554
No 77
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=96.04 E-value=0.031 Score=57.76 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=60.8
Q ss_pred eeCCEEEEEEEEEEeC--cceeeeccccccccccccChhHHHHHHHHHHhh-hCCceEEEEccch---hhHHhhhcccCc
Q 000404 1013 ERDDEIISAASIRIHG--KELAEMPFIGTRHMYRRQGMCRRLLTGIESALC-SLNVEKLIIPAIS---ELRETWTSVFGF 1086 (1562)
Q Consensus 1013 e~gdeIVSaASIRI~G--~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~-sLgVerLVLPA~~---eAv~~Wt~kFGF 1086 (1562)
..++++|+.+.+..+. ...+++-+ ...+.||||||++.++.++.+.+. .+++++|++.+.. .+..++. ++||
T Consensus 73 ~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~e-k~Gf 150 (179)
T PRK10151 73 FKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVAL-RNGF 150 (179)
T ss_pred EECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHH-HCCC
Confidence 4589999999886543 35688876 478999999999999988888665 5789998876554 4778888 8999
Q ss_pred eecch
Q 000404 1087 QPLEV 1091 (1562)
Q Consensus 1087 ~~me~ 1091 (1562)
+....
T Consensus 151 ~~~g~ 155 (179)
T PRK10151 151 TLEGC 155 (179)
T ss_pred EEEeE
Confidence 97643
No 78
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.53 E-value=0.0074 Score=63.86 Aligned_cols=29 Identities=38% Similarity=1.045 Sum_probs=25.4
Q ss_pred cCCcCcCC--CCCCCCCCeeccccccccccC
Q 000404 832 TFHQNCLD--IKKFPSGKWHCVYCSCQFCGR 860 (1562)
Q Consensus 832 aFH~~CL~--L~evPeGdW~Cp~C~C~~CGk 860 (1562)
+||++||. |..+|+|+|+|+.|.....+.
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~ 31 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQ 31 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCC
Confidence 59999997 889999999999998776654
No 79
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=95.22 E-value=0.022 Score=62.74 Aligned_cols=98 Identities=24% Similarity=0.307 Sum_probs=56.0
Q ss_pred CCCCCcchhHHhhccCCCCccccccccEEEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHh
Q 000404 981 HRSGINLIHNILYNFGSNFKRLNYKGFFTAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESAL 1060 (1562)
Q Consensus 981 ~rSGiDLIpdMVYnrGSnfkRLDF~GfYcaVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L 1060 (1562)
.+..-||||..+-. .|...+|..... +|| --|||.|++||+|||+.|++.|++.+
T Consensus 65 rRp~G~LiP~~L~~---~~~~~~f~~l~g--------------~RI--------vRIAvhP~~q~~G~Gs~lL~~l~~~~ 119 (196)
T PF13718_consen 65 RRPKGHLIPQTLAQ---HFGDPEFAQLSG--------------ARI--------VRIAVHPDLQRMGYGSRLLQQLEQYA 119 (196)
T ss_dssp ---SS-HHHHHHHH---HSS-TTGGGSEE--------------EEE--------EEEEE-CCC-SSSHHHHHHHHHHHT-
T ss_pred CCCCCCCHHHHHHH---HhCCHHHHhhcc--------------eeE--------EEEEEChhhhcCCHHHHHHHHHHHHH
Confidence 35678999998832 133344433322 233 33799999999999999999999998
Q ss_pred -------------------------hhCCceEEEEc--cchhhHHhhhcccCceecchhhHh-hhc-ccceEe
Q 000404 1061 -------------------------CSLNVEKLIIP--AISELRETWTSVFGFQPLEVSSKQ-KMR-NMSLLV 1104 (1562)
Q Consensus 1061 -------------------------~sLgVerLVLP--A~~eAv~~Wt~kFGF~~me~~ek~-elr-~~~ll~ 1104 (1562)
..-+|.+|=.. +.++++.||+ +-||.++=...+. +.. +|.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~-k~gf~pv~l~~~~n~~SGe~S~im 191 (196)
T PF13718_consen 120 EGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQ-KNGFVPVYLGQTRNEASGEHSAIM 191 (196)
T ss_dssp ----------------------------S-SEEEEEEE--HHHHHHHH-CTT-EEEEE-SS--TTT---EEEE
T ss_pred hhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHH-HCCcEEEEEecCcccccCceeeeE
Confidence 35667765443 5689999999 8999999655433 332 465544
No 80
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=94.94 E-value=0.016 Score=70.31 Aligned_cols=44 Identities=32% Similarity=0.821 Sum_probs=34.8
Q ss_pred cccceeCCCC-----ceEecccCCCcCCcCcCC------CCCCCCCCeecccccc
Q 000404 812 DTCGICGDGG-----DLICCDGCPSTFHQNCLD------IKKFPSGKWHCVYCSC 855 (1562)
Q Consensus 812 d~C~VCgdGG-----eLLcCD~CPraFH~~CL~------L~evPeGdW~Cp~C~C 855 (1562)
..|.+|..|+ +||.|+.|..-||+.|+. +..-+...|||..|.-
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 3499998543 699999999999999996 2233677999998853
No 81
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=94.89 E-value=0.093 Score=56.91 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=72.1
Q ss_pred EEEEeeCCEEEEEEEE---EEeC--cceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcc
Q 000404 1009 TAILERDDEIISAASI---RIHG--KELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSV 1083 (1562)
Q Consensus 1009 caVLe~gdeIVSaASI---RI~G--~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~k 1083 (1562)
..|.+.++++|+-..+ .+-| ...--|-.+|..++||+||+|++||...++.|+.+|...+++--.+ .+| .+
T Consensus 48 slVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp---~YY-~r 123 (171)
T COG3153 48 SLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDP---TYY-SR 123 (171)
T ss_pred eEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCc---ccc-cc
Confidence 4566777888875422 1222 2455677889999999999999999999999999999999988774 456 59
Q ss_pred cCceecchhhHhhhcccceEeeCCceeeeccccC
Q 000404 1084 FGFQPLEVSSKQKMRNMSLLVFPGVDMLQKPMMK 1117 (1562)
Q Consensus 1084 FGF~~me~~ek~elr~~~ll~F~GT~mLQK~L~k 1117 (1562)
|||.......-. .+.. +|.+.+|-+.|..
T Consensus 124 fGF~~~~~~~l~----~p~~-~~~~~fl~~~L~~ 152 (171)
T COG3153 124 FGFEPAAGAKLY----APGP-VPDERFLALELGD 152 (171)
T ss_pred cCcEEccccccc----cCCC-CCCceEEEEEccC
Confidence 999987543211 1111 5667777777753
No 82
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.79 E-value=0.0066 Score=81.56 Aligned_cols=45 Identities=33% Similarity=0.913 Sum_probs=39.2
Q ss_pred ccccceeCCCC---ceEecccCCCcCCcCcCC--CCCCCCCCeecccccc
Q 000404 811 DDTCGICGDGG---DLICCDGCPSTFHQNCLD--IKKFPSGKWHCVYCSC 855 (1562)
Q Consensus 811 dd~C~VCgdGG---eLLcCD~CPraFH~~CL~--L~evPeGdW~Cp~C~C 855 (1562)
.-.|.+|...+ .++.|+.|...||++|+. +..+|.|+|+|+.|+-
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~ 1157 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRK 1157 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccch
Confidence 34799998644 499999999999999997 7889999999999964
No 83
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=94.69 E-value=0.015 Score=70.37 Aligned_cols=42 Identities=33% Similarity=0.965 Sum_probs=34.4
Q ss_pred ccceeC-----CCCceEecccCCCcCCcCcCCCC---CCCC-------CCeeccccc
Q 000404 813 TCGICG-----DGGDLICCDGCPSTFHQNCLDIK---KFPS-------GKWHCVYCS 854 (1562)
Q Consensus 813 ~C~VCg-----dGGeLLcCD~CPraFH~~CL~L~---evPe-------GdW~Cp~C~ 854 (1562)
.|.||- +.|++|-||.|.-..|-.|.++. .+|. ..|||.-|.
T Consensus 121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~ 177 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACL 177 (707)
T ss_pred EEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHh
Confidence 799996 35789999999999999999832 3443 379999995
No 84
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=94.55 E-value=0.19 Score=54.44 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=75.7
Q ss_pred ccccEEEEEeeC-CEEEEEEEEEEeC-----cceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccch---
Q 000404 1004 YKGFFTAILERD-DEIISAASIRIHG-----KELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAIS--- 1074 (1562)
Q Consensus 1004 F~GfYcaVLe~g-deIVSaASIRI~G-----~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~--- 1074 (1562)
=.|||-+|++.+ +++++-|++.-|. +.++|... =..+.+||+|+|+.||++|-.....+||..|+---..
T Consensus 49 ~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~Si-Yv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~ 127 (169)
T COG1247 49 RDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVELSI-YLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNL 127 (169)
T ss_pred cCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEEEE-EECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCc
Confidence 345777777655 8999988776655 34555443 3567889999999999999999999999877643332
Q ss_pred hhHHhhhcccCceecchhhHhhhcccceEeeCCceeeeccccCC
Q 000404 1075 ELRETWTSVFGFQPLEVSSKQKMRNMSLLVFPGVDMLQKPMMKN 1118 (1562)
Q Consensus 1075 eAv~~Wt~kFGF~~me~~ek~elr~~~ll~F~GT~mLQK~L~k~ 1118 (1562)
..+.+-. +|||...-..... .+-.=.+-.+.+||+.|...
T Consensus 128 aSi~lh~-~~GF~~~G~~~~v---g~k~g~wld~~~~~~~l~~~ 167 (169)
T COG1247 128 ASIALHE-KLGFEEVGTFPEV---GDKFGRWLDLVLMQLLLEEG 167 (169)
T ss_pred HhHHHHH-HCCCEEecccccc---ccccceEEeeeeeehhhccc
Confidence 2345555 8999998443333 22223345667788888653
No 85
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=94.53 E-value=0.007 Score=50.37 Aligned_cols=34 Identities=35% Similarity=1.022 Sum_probs=20.5
Q ss_pred CceEecccCCCcCCcCcCCCCCCCCC-Ceeccccc
Q 000404 821 GDLICCDGCPSTFHQNCLDIKKFPSG-KWHCVYCS 854 (1562)
Q Consensus 821 GeLLcCD~CPraFH~~CL~L~evPeG-dW~Cp~C~ 854 (1562)
..||.|+.|.-.+|+.|.++..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 35899999999999999999888887 89998874
No 86
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=94.31 E-value=0.074 Score=58.61 Aligned_cols=84 Identities=15% Similarity=0.202 Sum_probs=66.7
Q ss_pred ccEEEEEeeCCEEEEEEEEEE---eCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEE---ccchhhHHh
Q 000404 1006 GFFTAILERDDEIISAASIRI---HGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLII---PAISELRET 1079 (1562)
Q Consensus 1006 GfYcaVLe~gdeIVSaASIRI---~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVL---PA~~eAv~~ 1079 (1562)
--|-..++...++|+-+++|+ +|..++=..=|=.-+.|||+|+|+.||+.+|.+....+.+.++| ..-.-|++|
T Consensus 92 ~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~F 171 (202)
T KOG2488|consen 92 LRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGF 171 (202)
T ss_pred ceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHH
Confidence 357788888889999999997 45455555555667789999999999999999887777775554 455669999
Q ss_pred hhcccCceecc
Q 000404 1080 WTSVFGFQPLE 1090 (1562)
Q Consensus 1080 Wt~kFGF~~me 1090 (1562)
|. ++||...+
T Consensus 172 y~-~~gf~~~~ 181 (202)
T KOG2488|consen 172 YH-RLGFVVDE 181 (202)
T ss_pred HH-HcCcccCC
Confidence 99 89998874
No 87
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=94.26 E-value=0.071 Score=52.61 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=56.8
Q ss_pred EEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceE--EEEccchhhHHhhhcccCcee
Q 000404 1011 ILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEK--LIIPAISELRETWTSVFGFQP 1088 (1562)
Q Consensus 1011 VLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVer--LVLPA~~eAv~~Wt~kFGF~~ 1088 (1562)
||--.|.+||=..+ .+.+||+.-.|.++|||||+.+.++..+.+.|..+|+-- -|..+-..+..+=. .+||..
T Consensus 3 llgpeG~PVSW~lm----dqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~-~lg~~~ 77 (89)
T PF08444_consen 3 LLGPEGNPVSWSLM----DQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSK-SLGFIF 77 (89)
T ss_pred ccCCCCCEeEEEEe----cccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHH-HCCCee
Confidence 55667888887766 357899999999999999999999999999999998764 22222233334444 688887
Q ss_pred cc
Q 000404 1089 LE 1090 (1562)
Q Consensus 1089 me 1090 (1562)
|+
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 74
No 88
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=94.22 E-value=0.048 Score=46.03 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=39.6
Q ss_pred ccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCc
Q 000404 1037 IGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGF 1086 (1562)
Q Consensus 1037 VATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF 1086 (1562)
+++.+.|||+|+|+.||..++......|+. ....++.+|. .+||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~-~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYE-KNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHH-hcCC
Confidence 999999999999999999999999998887 6667788888 7888
No 89
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=94.04 E-value=0.23 Score=57.11 Aligned_cols=74 Identities=18% Similarity=0.060 Sum_probs=57.0
Q ss_pred eCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCceec
Q 000404 1014 RDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQPL 1089 (1562)
Q Consensus 1014 ~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~m 1089 (1562)
.+++|||+|+-.......+||- |+|.++|||||+.+++-+.+-..+..-|+.=.|-.+-...+.+=. ++||+..
T Consensus 172 ~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~N~~S~~lA~-kLGf~~~ 245 (265)
T PF12746_consen 172 HDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCHNLASIALAE-KLGFHFD 245 (265)
T ss_dssp ETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EESSHHHHHHHH-HCT--EE
T ss_pred ECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCCCHHHHHHHH-HcCCccc
Confidence 6899999987777677888986 699999999999999999999999999999988876554555555 7999765
No 90
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=93.78 E-value=0.096 Score=57.17 Aligned_cols=80 Identities=9% Similarity=0.182 Sum_probs=58.1
Q ss_pred eCCEEEEEEEE-EEeCc-ceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCceecch
Q 000404 1014 RDDEIISAASI-RIHGK-ELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQPLEV 1091 (1562)
Q Consensus 1014 ~gdeIVSaASI-RI~G~-~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~me~ 1091 (1562)
-.++||+-+-+ +|-.+ +..-+--|-.....||||||++||+.+|...+..|...+.|..+++ ..||+ ++||..-++
T Consensus 64 ~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe-~lGYe~c~P 141 (225)
T KOG3397|consen 64 ENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYE-SLGYEKCDP 141 (225)
T ss_pred cccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhh-hhcccccCc
Confidence 34566665533 23222 2223334555667899999999999999999999999999987654 78999 899988776
Q ss_pred hhHh
Q 000404 1092 SSKQ 1095 (1562)
Q Consensus 1092 ~ek~ 1095 (1562)
-...
T Consensus 142 i~~~ 145 (225)
T KOG3397|consen 142 IVHS 145 (225)
T ss_pred eecc
Confidence 5433
No 91
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=93.46 E-value=0.037 Score=62.82 Aligned_cols=36 Identities=19% Similarity=0.639 Sum_probs=29.3
Q ss_pred ccccccc--cccc-cccCCCCCCCCCCcccCCCccccccccHHH
Q 000404 877 STLQICS--LCEE-KYHQSCSQTDGAVQYEPSSLSFCGKKCQEI 917 (1562)
Q Consensus 877 ~tLL~CD--QCER-~YHvsCLrp~~~L~evPeg~WFCsk~CqeI 917 (1562)
+.|+-|| -|++ |||..|+.. .+.|.+.||| ..|+..
T Consensus 232 GqMVaCDn~nCkrEWFH~~CVGL----k~pPKG~WYC-~eCk~~ 270 (271)
T COG5034 232 GQMVACDNANCKREWFHLECVGL----KEPPKGKWYC-PECKKA 270 (271)
T ss_pred ccceecCCCCCchhheecccccc----CCCCCCcEeC-HHhHhc
Confidence 4688899 6997 889999984 4679999999 588753
No 92
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=92.56 E-value=0.051 Score=65.92 Aligned_cols=42 Identities=38% Similarity=1.026 Sum_probs=35.2
Q ss_pred cccceeCCCCc---eEecccCCCcCCcCcCC--CCCCCC----CCeecccc
Q 000404 812 DTCGICGDGGD---LICCDGCPSTFHQNCLD--IKKFPS----GKWHCVYC 853 (1562)
Q Consensus 812 d~C~VCgdGGe---LLcCD~CPraFH~~CL~--L~evPe----GdW~Cp~C 853 (1562)
..|+||...-+ |+.||.|...||+.||. |...|. -.|.|.+|
T Consensus 545 ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 545 YSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred eeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccc
Confidence 46999997554 89999999999999997 666664 36999999
No 93
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=91.83 E-value=0.18 Score=55.55 Aligned_cols=82 Identities=18% Similarity=0.224 Sum_probs=58.7
Q ss_pred eeeeccccccccccccChhHHHHHHHHHHhhhCC-ce---EEEEccchhhHHhhhcccCceecchhhHhhhcccceEeeC
Q 000404 1031 LAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLN-VE---KLIIPAISELRETWTSVFGFQPLEVSSKQKMRNMSLLVFP 1106 (1562)
Q Consensus 1031 vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLg-Ve---rLVLPA~~eAv~~Wt~kFGF~~me~~ek~elr~~~ll~F~ 1106 (1562)
+.-+-.+|+.+.||+.|+|+.|++.+.+.....+ .. .-++-+-..|+.+|+ ++||..+..-.- .+....-+
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~-~~gF~~~~~~~~----~y~~~~~~ 163 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYE-KRGFEIVERLKN----YYSILGPP 163 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHH-hcCceEeecccc----ccccccCc
Confidence 5667889999999999999999999999888888 33 334445567999999 899998853321 23333334
Q ss_pred CceeeeccccC
Q 000404 1107 GVDMLQKPMMK 1117 (1562)
Q Consensus 1107 GT~mLQK~L~k 1117 (1562)
-...|.|++..
T Consensus 164 ~~~~l~~~~~~ 174 (187)
T KOG3138|consen 164 DDSFLRKLLIH 174 (187)
T ss_pred chhhhhhheec
Confidence 44455666543
No 94
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=91.52 E-value=0.9 Score=49.10 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=66.8
Q ss_pred cccccccEEEEEee-CCEEEEEEEEEEe-----CcceeeeccccccccccccChhHHHHHHHHHHhhhCCceE---EEEc
Q 000404 1001 RLNYKGFFTAILER-DDEIISAASIRIH-----GKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEK---LIIP 1071 (1562)
Q Consensus 1001 RLDF~GfYcaVLe~-gdeIVSaASIRI~-----G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVer---LVLP 1071 (1562)
.-.|.-.+.+.++. +.++++-|.+..+ |.+.-=|-=+=.+++|||+|+|+.|++.+-+....+|..+ +|+.
T Consensus 48 d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vld 127 (163)
T KOG3216|consen 48 DPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLD 127 (163)
T ss_pred CCCccEEEEEEEecCCCceeEEeeeecccccccccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 33444445555555 8888888877653 3344445556789999999999999999999888888666 5666
Q ss_pred cchhhHHhhhcccCceecch
Q 000404 1072 AISELRETWTSVFGFQPLEV 1091 (1562)
Q Consensus 1072 A~~eAv~~Wt~kFGF~~me~ 1091 (1562)
--.-|+.+|+ +.|.+.+..
T Consensus 128 wN~rAi~lY~-k~gaq~l~~ 146 (163)
T KOG3216|consen 128 WNHRAILLYE-KVGAQDLKE 146 (163)
T ss_pred cchhHHHHHH-HhCccccce
Confidence 6678999999 888887654
No 95
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=90.04 E-value=0.31 Score=62.71 Aligned_cols=71 Identities=21% Similarity=0.310 Sum_probs=52.8
Q ss_pred eeccccccccccccChhHHHHHHHHHHhhhCCceEEEEc--cchhhHHhhhcccCceecchhh-Hhhhc-ccceEee
Q 000404 1033 EMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIP--AISELRETWTSVFGFQPLEVSS-KQKMR-NMSLLVF 1105 (1562)
Q Consensus 1033 EMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLP--A~~eAv~~Wt~kFGF~~me~~e-k~elr-~~~ll~F 1105 (1562)
+|--|||.|++|++|||++|++.|.+... -++..|-.. +.+++..||. +=||.++=... |.... +|+.++.
T Consensus 533 RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~-rnGF~pVhls~~rn~~SGeys~i~l 607 (758)
T COG1444 533 RIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWL-RNGFVPVHLSPTRNASSGEYTAIVL 607 (758)
T ss_pred eEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHH-HcCeEEEEecCccCcCCCceeEEEE
Confidence 33447999999999999999999999875 334444333 6789999999 89999995544 44443 5766554
No 96
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=89.23 E-value=1.9 Score=45.33 Aligned_cols=81 Identities=21% Similarity=0.365 Sum_probs=57.4
Q ss_pred cccEEEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccch------hhHH
Q 000404 1005 KGFFTAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAIS------ELRE 1078 (1562)
Q Consensus 1005 ~GfYcaVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~------eAv~ 1078 (1562)
.-+|++- -|+.+++|+-+.+.| +.++|--+..|..-||.|.|..|++.+.+.+ -.|...++.+.. .++.
T Consensus 38 ~~l~aAr--FNdRlLgAv~v~~~~-~~~~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~~ 112 (128)
T PF12568_consen 38 HRLFAAR--FNDRLLGAVKVTISG-QQAELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVMA 112 (128)
T ss_dssp EEEEEEE--ETTEEEEEEEEEEET-TEEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHH
T ss_pred CeEEEEE--echheeeeEEEEEcC-cceEEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCCcccchHHHH
Confidence 3455554 799999999999987 5799999999999999999999999999998 667777766552 3444
Q ss_pred hhhcccCceecc
Q 000404 1079 TWTSVFGFQPLE 1090 (1562)
Q Consensus 1079 ~Wt~kFGF~~me 1090 (1562)
-....+||+.-+
T Consensus 113 ~Fm~a~GF~~~~ 124 (128)
T PF12568_consen 113 AFMQACGFSAQS 124 (128)
T ss_dssp HHHHHHT-EE-S
T ss_pred HHHHHcCccccC
Confidence 444489997643
No 97
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=89.15 E-value=0.14 Score=67.07 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=40.4
Q ss_pred cccccceeCCCCceEeccc-CCCcCCc-CcCC---C-CCCCCCCeeccccccc
Q 000404 810 NDDTCGICGDGGDLICCDG-CPSTFHQ-NCLD---I-KKFPSGKWHCVYCSCQ 856 (1562)
Q Consensus 810 ndd~C~VCgdGGeLLcCD~-CPraFH~-~CL~---L-~evPeGdW~Cp~C~C~ 856 (1562)
+.+.|.||+..+-+|||+. ||..||. .||+ + ..++++-|+|+.|.-.
T Consensus 427 i~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~r 479 (1414)
T KOG1473|consen 427 ISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIR 479 (1414)
T ss_pred eeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHH
Confidence 4467999999999999997 9999998 9998 2 3578999999999644
No 98
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=89.14 E-value=0.21 Score=53.29 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=21.2
Q ss_pred cccCCCCCCCCCCcccCCCccccccccH
Q 000404 888 KYHQSCSQTDGAVQYEPSSLSFCGKKCQ 915 (1562)
Q Consensus 888 ~YHvsCLrp~~~L~evPeg~WFCsk~Cq 915 (1562)
.||..||+|+ +..+|.+.|+|+ .|.
T Consensus 1 g~H~~CL~Pp--l~~~P~g~W~Cp-~C~ 25 (148)
T cd04718 1 GFHLCCLRPP--LKEVPEGDWICP-FCE 25 (148)
T ss_pred CcccccCCCC--CCCCCCCCcCCC-CCc
Confidence 4999999994 678999999998 554
No 99
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=88.94 E-value=0.31 Score=52.70 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=41.7
Q ss_pred ccccccccccChhHHHHHHHHHHhhhCCceEEEE---ccchhhHHhhhcccCcee
Q 000404 1037 IGTRHMYRRQGMCRRLLTGIESALCSLNVEKLII---PAISELRETWTSVFGFQP 1088 (1562)
Q Consensus 1037 VATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVL---PA~~eAv~~Wt~kFGF~~ 1088 (1562)
++..|.|||+|++..||+.||..+..-+.-.++| -.-+-|+.+|+ +|||.+
T Consensus 75 ltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYk-kLGY~~ 128 (173)
T KOG3234|consen 75 LTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYK-KLGYSV 128 (173)
T ss_pred EEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHH-hcCceE
Confidence 5667899999999999999999888776555444 44456999999 899976
No 100
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=88.82 E-value=1.8 Score=43.46 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=65.4
Q ss_pred cccccEEEEEeeCC--EEEEEEEEEEeC----cceeeeccccccccccccChhHHHHHHHHHHhhh-CCceEEEEccchh
Q 000404 1003 NYKGFFTAILERDD--EIISAASIRIHG----KELAEMPFIGTRHMYRRQGMCRRLLTGIESALCS-LNVEKLIIPAISE 1075 (1562)
Q Consensus 1003 DF~GfYcaVLe~gd--eIVSaASIRI~G----~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~s-LgVerLVLPA~~e 1075 (1562)
.-.+.|.+.+..++ ++|+...+..+. ...+++-..- .+.|+||||+...+..+...+-. +++.++++-..+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~ 140 (187)
T COG1670 62 LGGGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPE 140 (187)
T ss_pred cCCceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCC
Confidence 33455666666555 999988877543 4677776655 89999999999999888886554 9999998877765
Q ss_pred ---hHHhhhcccCceecchhh
Q 000404 1076 ---LRETWTSVFGFQPLEVSS 1093 (1562)
Q Consensus 1076 ---Av~~Wt~kFGF~~me~~e 1093 (1562)
+..... ++||+......
T Consensus 141 N~~S~rv~e-k~Gf~~eg~~~ 160 (187)
T COG1670 141 NEASIRVYE-KLGFRLEGELR 160 (187)
T ss_pred CHHHHHHHH-HcCChhhhhhh
Confidence 445555 89998774433
No 101
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=88.27 E-value=0.29 Score=52.80 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=47.6
Q ss_pred eeeccccccccccccChhHHHHHH-HHHHhhhCCceEEEEccchhhHHhhhcccCceecch
Q 000404 1032 AEMPFIGTRHMYRRQGMCRRLLTG-IESALCSLNVEKLIIPAISELRETWTSVFGFQPLEV 1091 (1562)
Q Consensus 1032 AEMPLVATr~~yRrQGmcR~Lm~~-IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~me~ 1091 (1562)
+-+--+|.-++||.||++..|+.. |..+-.+-=|.+++|=+-+-+++||. +|||..+-+
T Consensus 102 i~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYE-r~gFk~vgp 161 (190)
T KOG4144|consen 102 IHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYE-RFGFKAVGP 161 (190)
T ss_pred eeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhH-hcCceeecc
Confidence 444456677899999999999988 55555555677899999999999999 899999954
No 102
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=87.51 E-value=1.7 Score=41.38 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=45.6
Q ss_pred EEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceE
Q 000404 1011 ILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEK 1067 (1562)
Q Consensus 1011 VLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVer 1067 (1562)
.|..+++.++...++. +.+.-.|-=.-+.+++||||+++.||+++-+.++.-|..-
T Consensus 3 ~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv 58 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKV 58 (78)
T ss_dssp EEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EE
T ss_pred EEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEE
Confidence 3556688999999988 5567777778889999999999999999999999888764
No 103
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=87.38 E-value=0.23 Score=33.83 Aligned_cols=11 Identities=64% Similarity=0.963 Sum_probs=3.3
Q ss_pred CCCCCCCCCCC
Q 000404 400 KKKRGRPPKLQ 410 (1562)
Q Consensus 400 KRKRGRPpK~~ 410 (1562)
+|+||||+|..
T Consensus 1 ~r~RGRP~k~~ 11 (13)
T PF02178_consen 1 KRKRGRPRKNA 11 (13)
T ss_dssp S--SS--TT--
T ss_pred CCcCCCCcccc
Confidence 46677777654
No 104
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=86.93 E-value=0.23 Score=67.59 Aligned_cols=47 Identities=17% Similarity=0.390 Sum_probs=37.3
Q ss_pred cccccccccccccccCCCCCCCCCCcccCCCccccccccHHHHHHHHHHh
Q 000404 876 LSTLQICSLCEEKYHQSCSQTDGAVQYEPSSLSFCGKKCQEIFERLEKLL 925 (1562)
Q Consensus 876 d~tLL~CDQCER~YHvsCLrp~~~L~evPeg~WFCsk~CqeI~ekLQkLL 925 (1562)
...|+.|+.|..+||..|+++ .+...|.+.|+|+ .|..-....+...
T Consensus 1120 ~~~m~lc~~c~~~~h~~C~rp--~~~~~~~~dW~C~-~c~~e~~~rr~~~ 1166 (1404)
T KOG1245|consen 1120 DEKMLLCDECLSGFHLFCLRP--ALSSVPPGDWMCP-SCRKEHRARRQKR 1166 (1404)
T ss_pred chhhhhhHhhhhhHHHHhhhh--hhccCCcCCccCC-ccchhhhhhhhhh
Confidence 356899999999999999998 4677899999997 7776665444443
No 105
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=86.22 E-value=0.36 Score=63.89 Aligned_cols=34 Identities=24% Similarity=0.719 Sum_probs=28.4
Q ss_pred cccccccccccccccCCCCCCCCCCcccCCCcccccccc
Q 000404 876 LSTLQICSLCEEKYHQSCSQTDGAVQYEPSSLSFCGKKC 914 (1562)
Q Consensus 876 d~tLL~CDQCER~YHvsCLrp~~~L~evPeg~WFCsk~C 914 (1562)
...+++||.|...||+.|+. ...+|++.|+| ..|
T Consensus 233 ~n~ivfCD~Cnl~VHq~Cyg----i~~ipeg~WlC-r~C 266 (1051)
T KOG0955|consen 233 SNVIVFCDGCNLAVHQECYG----IPFIPEGQWLC-RRC 266 (1051)
T ss_pred CceEEEcCCCcchhhhhccC----CCCCCCCcEee-hhh
Confidence 35689999999999999998 34689999999 355
No 106
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=85.64 E-value=0.48 Score=59.83 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=30.9
Q ss_pred eceeeCCceecCC--CCCccccccccc---CCCCccccCcc
Q 000404 735 QGRIARDGIRCDC--CSEIFTISKFDT---HSKSKLCHPFQ 770 (1562)
Q Consensus 735 eG~ItgdGI~CdC--C~kvFhpScFEa---HAGs~scrPYk 770 (1562)
.||...-.|.|+. |..++|..|+-+ +.|-|.|+.|+
T Consensus 15 rGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCe 55 (900)
T KOG0956|consen 15 RGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCE 55 (900)
T ss_pred CCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhh
Confidence 5888888899998 999999999876 89999887765
No 107
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=85.17 E-value=0.49 Score=37.60 Aligned_cols=16 Identities=44% Similarity=0.607 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCCcce
Q 000404 400 KKKRGRPPKLQGINEV 415 (1562)
Q Consensus 400 KRKRGRPpK~~g~~~~ 415 (1562)
+|+||||||.......
T Consensus 1 kRkRGRPrK~~~~~~~ 16 (26)
T smart00384 1 KRKRGRPRKAPKDXXX 16 (26)
T ss_pred CCCCCCCCCCCCcccc
Confidence 5899999999876553
No 108
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=85.14 E-value=3.8 Score=39.92 Aligned_cols=64 Identities=17% Similarity=-0.007 Sum_probs=55.3
Q ss_pred cEEEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEc
Q 000404 1007 FFTAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIP 1071 (1562)
Q Consensus 1007 fYcaVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLP 1071 (1562)
..-.+|..++++|+++..-.++ +.+...++|+.++|++.+.+..|+..+-+.+...|++.+=+-
T Consensus 71 ~~l~~~~~~g~~va~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g 134 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALGFRHG-GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFG 134 (142)
T ss_pred EEEEEEEECCEEEEEEEEEEEC-CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEEC
Confidence 5566788899999999876666 567789999999999999999999999999999999877553
No 109
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=82.88 E-value=4.2 Score=44.95 Aligned_cols=82 Identities=23% Similarity=0.361 Sum_probs=59.1
Q ss_pred EEEEEeeCCEEEEEEE-EEEeC------cceeeeccccccccccccChhHHHHHHHHH-HhhhCCceEEEEccchhhHHh
Q 000404 1008 FTAILERDDEIISAAS-IRIHG------KELAEMPFIGTRHMYRRQGMCRRLLTGIES-ALCSLNVEKLIIPAISELRET 1079 (1562)
Q Consensus 1008 YcaVLe~gdeIVSaAS-IRI~G------~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~-~L~sLgVerLVLPA~~eAv~~ 1079 (1562)
|.++|.-.+++|++.+ ++.++ ..+--+.|.=..++|||.|+++ |+..+.. .+.. +=...+.-+...+..+
T Consensus 48 ~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~-~~~N~~~~~~~~~~~~ 125 (181)
T PF06852_consen 48 VLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDS-VDDNSVAQGNVKMSNF 125 (181)
T ss_pred EEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhcc-CCCceeeecCHHHHHH
Confidence 5555555567887664 45553 2466777778899999999996 6666655 4444 4455777888999999
Q ss_pred hhcccCceecch
Q 000404 1080 WTSVFGFQPLEV 1091 (1562)
Q Consensus 1080 Wt~kFGF~~me~ 1091 (1562)
|..-|||..+..
T Consensus 126 w~k~~G~~~~~h 137 (181)
T PF06852_consen 126 WHKMFGFDDYGH 137 (181)
T ss_pred HHHHhCCCCCcc
Confidence 999999877755
No 110
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=82.88 E-value=0.63 Score=37.05 Aligned_cols=10 Identities=80% Similarity=1.208 Sum_probs=6.9
Q ss_pred CCCCCCCCCC
Q 000404 307 KRKRGRPPKM 316 (1562)
Q Consensus 307 KRKRGRPPK~ 316 (1562)
+|+||||||.
T Consensus 1 kRkRGRPrK~ 10 (26)
T smart00384 1 KRKRGRPRKA 10 (26)
T ss_pred CCCCCCCCCC
Confidence 4677777776
No 111
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=82.79 E-value=4.8 Score=40.73 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=57.6
Q ss_pred ccEEEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhh
Q 000404 1006 GFFTAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWT 1081 (1562)
Q Consensus 1006 GfYcaVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt 1081 (1562)
++|+ +..+++.++.++..-.|.+.--++=..+...+||||+++.|+.......+.-|.. ++|.-+-+..+|.
T Consensus 16 ~~y~--~~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k--iiP~Csf~~a~~~ 87 (99)
T COG2388 16 GRYV--LTDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK--IIPLCSFAVATYF 87 (99)
T ss_pred eEEE--EecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe--EcccchHHHHHHH
Confidence 4454 6788888888888777888899999999999999999999999999988888874 6676664444333
No 112
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=78.90 E-value=2.3 Score=40.96 Aligned_cols=40 Identities=35% Similarity=0.541 Sum_probs=33.4
Q ss_pred HhcCeeeeeccCCC--CCcccceeeCCCCceeeehHHHHHHH
Q 000404 523 LAAGWKIEYRPRNG--REYCDAVYVNPEGKTHWSITLAYSVL 562 (1562)
Q Consensus 523 l~agwtid~rpr~~--r~y~davyi~p~g~~ywsitkay~~~ 562 (1562)
|-.||+....+|.+ .-..|..||+|.|+.+=|....-.-|
T Consensus 7 lp~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS~~ev~~yL 48 (77)
T cd01396 7 LPPGWKRELVPRKSGSAGKFDVYYISPTGKKFRSKVELARYL 48 (77)
T ss_pred CCCCCEEEEEEecCCCCCcceEEEECCCCCEEECHHHHHHHH
Confidence 56799999999998 88999999999999987765544433
No 113
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=78.48 E-value=0.8 Score=58.38 Aligned_cols=36 Identities=22% Similarity=0.551 Sum_probs=30.4
Q ss_pred ccccccccccccccccCCCCCCCCCCcccCCCccccccccH
Q 000404 875 ALSTLQICSLCEEKYHQSCSQTDGAVQYEPSSLSFCGKKCQ 915 (1562)
Q Consensus 875 sd~tLL~CDQCER~YHvsCLrp~~~L~evPeg~WFCsk~Cq 915 (1562)
....|++|+.|.-.+|..|.. +.++|++.|.|. .|.
T Consensus 284 ~~neMVfCd~Cn~cVHqaCyG----Ile~p~gpWlCr-~Ca 319 (893)
T KOG0954|consen 284 EANEMVFCDKCNICVHQACYG----ILEVPEGPWLCR-TCA 319 (893)
T ss_pred ccceeEEeccchhHHHHhhhc----eeecCCCCeeeh-hcc
Confidence 356799999999999999997 458899999995 664
No 114
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=77.40 E-value=1 Score=55.38 Aligned_cols=34 Identities=35% Similarity=0.743 Sum_probs=28.7
Q ss_pred cccccccccccccccCCCCCCCCCCcccCCCcccccccc
Q 000404 876 LSTLQICSLCEEKYHQSCSQTDGAVQYEPSSLSFCGKKC 914 (1562)
Q Consensus 876 d~tLL~CDQCER~YHvsCLrp~~~L~evPeg~WFCsk~C 914 (1562)
..++++||.|+-..|..|..- .-+|++.|||- .|
T Consensus 207 ~naiVfCdgC~i~VHq~CYGI----~f~peG~WlCr-kC 240 (669)
T COG5141 207 SNAIVFCDGCEICVHQSCYGI----QFLPEGFWLCR-KC 240 (669)
T ss_pred cceEEEecCcchhhhhhcccc----eecCcchhhhh-hh
Confidence 467899999999999999974 35799999994 44
No 115
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=77.31 E-value=5.7 Score=46.97 Aligned_cols=81 Identities=21% Similarity=0.376 Sum_probs=70.5
Q ss_pred cEEEEEeeCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCc
Q 000404 1007 FFTAILERDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGF 1086 (1562)
Q Consensus 1007 fYcaVLe~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF 1086 (1562)
.++++...+++||++.++ +|. -|.-||+.+.+||-|..-.|+.+|-.++-.+|..+|++-.-++-..+.+ ..||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGn---vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk-~~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGN---VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFK-QCGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccc---eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHH-hCCc
Confidence 456666777999999995 563 3678999999999999999999999999999999999999999999999 7999
Q ss_pred eecchhh
Q 000404 1087 QPLEVSS 1093 (1562)
Q Consensus 1087 ~~me~~e 1093 (1562)
..+..-+
T Consensus 111 ~~i~~~~ 117 (352)
T COG3053 111 SEIASAE 117 (352)
T ss_pred eEeeccC
Confidence 9986544
No 116
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=76.50 E-value=1.5 Score=41.70 Aligned_cols=40 Identities=33% Similarity=0.391 Sum_probs=32.2
Q ss_pred HhcCeeeeeccCCC---CCcccceeeCCCCceeeehHHHHHHH
Q 000404 523 LAAGWKIEYRPRNG---REYCDAVYVNPEGKTHWSITLAYSVL 562 (1562)
Q Consensus 523 l~agwtid~rpr~~---r~y~davyi~p~g~~ywsitkay~~~ 562 (1562)
|-.||+...+.|.+ ..-.|..|++|.|+.+.|...-...|
T Consensus 11 Lp~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL 53 (77)
T PF01429_consen 11 LPDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRSKKEVVRYL 53 (77)
T ss_dssp STTT-EEEEEESSSSTTTTSEEEEEEETTSEEESSHHHHHHHH
T ss_pred CCCCCEEEEEEecCCCcCCceEEEEECCCCCEEeCHHHHHHHH
Confidence 45799999998874 35799999999999999987766555
No 117
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=72.54 E-value=0.91 Score=55.10 Aligned_cols=23 Identities=13% Similarity=0.501 Sum_probs=15.4
Q ss_pred eeCCceecCCCCCcccccccccC
Q 000404 738 IARDGIRCDCCSEIFTISKFDTH 760 (1562)
Q Consensus 738 ItgdGI~CdCC~kvFhpScFEaH 760 (1562)
|++++.-|.-=++.||+.||--+
T Consensus 284 V~g~~~ac~Am~~~fHv~CFtC~ 306 (468)
T KOG1701|consen 284 VSGQGLAVEAMDQLFHVQCFTCR 306 (468)
T ss_pred ccCcchHHHHhhhhhcccceehH
Confidence 44566666666677888888654
No 118
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=71.75 E-value=4.2 Score=49.00 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=50.1
Q ss_pred ceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCceecch
Q 000404 1030 ELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQPLEV 1091 (1562)
Q Consensus 1030 ~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~me~ 1091 (1562)
..|-|-.||+-++|||+|+-|.||....+....-|+---+|-+.. ..||. ||||..-..
T Consensus 69 ~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P~s--~~iYr-KfGye~asn 127 (389)
T COG4552 69 PTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHPFS--GGIYR-KFGYEYASN 127 (389)
T ss_pred eccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEeccCc--hhhHh-hccccccce
Confidence 345567899999999999999999999999999999887776553 67899 999987654
No 119
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=70.11 E-value=7 Score=43.06 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=19.7
Q ss_pred CCceecCCCCCcccccccccCCCC
Q 000404 740 RDGIRCDCCSEIFTISKFDTHSKS 763 (1562)
Q Consensus 740 gdGI~CdCC~kvFhpScFEaHAGs 763 (1562)
+-.|.|-.|..+||-.|+-..+.-
T Consensus 15 G~Lv~CQGCs~sYHk~CLG~Rs~R 38 (175)
T PF15446_consen 15 GPLVYCQGCSSSYHKACLGPRSQR 38 (175)
T ss_pred CCeEEcCccChHHHhhhcCCcccc
Confidence 445999999999999999876553
No 120
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=68.87 E-value=4.6 Score=44.25 Aligned_cols=63 Identities=16% Similarity=0.281 Sum_probs=50.0
Q ss_pred ccccccccccccChhHHHHHH-HHHHhhhCCceEEEEccch---hhHHhhhcccCceecchhhHhhh
Q 000404 1035 PFIGTRHMYRRQGMCRRLLTG-IESALCSLNVEKLIIPAIS---ELRETWTSVFGFQPLEVSSKQKM 1097 (1562)
Q Consensus 1035 PLVATr~~yRrQGmcR~Lm~~-IE~~L~sLgVerLVLPA~~---eAv~~Wt~kFGF~~me~~ek~el 1097 (1562)
--+|....|||.|+++.||.. +-.++...+.+++-|..+. .|+.+|++.+||.+.+.+-+...
T Consensus 75 tSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~kYYa 141 (193)
T KOG3235|consen 75 TSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEPKYYA 141 (193)
T ss_pred EEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeeccccccc
Confidence 345666789999999999976 4446777888888888775 59999999999999987766543
No 121
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=68.23 E-value=7.5 Score=35.75 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=32.8
Q ss_pred hcCeeeeeccCCC--CCcccceeeCCCCceeeehHHHHHHH
Q 000404 524 AAGWKIEYRPRNG--REYCDAVYVNPEGKTHWSITLAYSVL 562 (1562)
Q Consensus 524 ~agwtid~rpr~~--r~y~davyi~p~g~~ywsitkay~~~ 562 (1562)
-.||+-..++|++ .-..|-.|++|.|+..=|....-..|
T Consensus 7 p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk~~Rs~~ev~~yL 47 (62)
T cd00122 7 PPGWKRELVIRKSGSAGKGDVYYYSPCGKKLRSKPEVARYL 47 (62)
T ss_pred CCCeEEEEEEcCCCCCCcceEEEECCCCceecCHHHHHHHH
Confidence 5799999999998 89999999999999887766544444
No 122
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=66.93 E-value=4.6 Score=47.85 Aligned_cols=92 Identities=17% Similarity=0.452 Sum_probs=57.5
Q ss_pred ccceeCC-CCceEecccCCCcCCcCcCCCCCCCCCCeeccccccc----cccCc-C---------------C--cccccC
Q 000404 813 TCGICGD-GGDLICCDGCPSTFHQNCLDIKKFPSGKWHCVYCSCQ----FCGRI-N---------------E--STCHVN 869 (1562)
Q Consensus 813 ~C~VCgd-GGeLLcCD~CPraFH~~CL~L~evPeGdW~Cp~C~C~----~CGk~-~---------------g--~~C~r~ 869 (1562)
.|.-|.- ++....|-.|.-.+|-.-..+.-...+++.|.-|.-. .|... . + -+|.+.
T Consensus 57 sClTC~P~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc~l~~~~~~~n~~N~YNhNfqG~~C~Cd~~ 136 (345)
T KOG2752|consen 57 SCLTCTPAPEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSCNLLEDKDAENSENLYNHNFQGLFCKCDTP 136 (345)
T ss_pred EeecccCChhhceeEEEeeeeecCCceeeeccccCCcccccccccccccccccccccccccchhhhhhhhcceeEEecCC
Confidence 5777774 4467788888877787666544445667887665321 13100 0 0 034444
Q ss_pred CCC--Cccccccccccccccccc-CCCCCCCCCCcccC
Q 000404 870 DQD--DSALSTLQICSLCEEKYH-QSCSQTDGAVQYEP 904 (1562)
Q Consensus 870 ~n~--~~sd~tLL~CDQCER~YH-vsCLrp~~~L~evP 904 (1562)
++. ...+..|+.|-.|+.||| ..|++....+...|
T Consensus 137 Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~~~~~~yp 174 (345)
T KOG2752|consen 137 YPDPVRTEEGEMLQCVICEDWFHCEGCMQAKTFLEDYP 174 (345)
T ss_pred CCCccccccceeeeEEeccchhcccccCcccchhhccc
Confidence 443 335778999999999999 99998765444334
No 123
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=63.89 E-value=6.8 Score=48.62 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=43.9
Q ss_pred cccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCceec
Q 000404 1040 RHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQPL 1089 (1562)
Q Consensus 1040 r~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~m 1089 (1562)
...+|+||||+.||..-|+..+.-+.+++.+=+---+-..|. +|||...
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~-k~GY~~~ 507 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYR-KLGYELD 507 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHH-HhCcccc
Confidence 478999999999999999999999999888777778888898 9999765
No 124
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=61.56 E-value=16 Score=40.44 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=54.8
Q ss_pred cEEEEEeeCCEEEEEEEEEEeCcceeeecc-----ccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhH
Q 000404 1007 FFTAILERDDEIISAASIRIHGKELAEMPF-----IGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELR 1077 (1562)
Q Consensus 1007 fYcaVLe~gdeIVSaASIRI~G~~vAEMPL-----VATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv 1077 (1562)
.|-++-+ ++++|+...||..=.+ ..+.. -+.+|..||+||++.++.-..+..+.||+..+++-+..+-+
T Consensus 70 ~y~~v~~-d~~ivG~i~lRh~Ln~-~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ 143 (174)
T COG3981 70 TYWAVDE-DGQIVGFINLRHQLND-FLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNI 143 (174)
T ss_pred eEEEEec-CCcEEEEEEeeeecch-HHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCc
Confidence 5666767 8999999999974321 22221 35899999999999999999999999999999998887644
No 125
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=60.92 E-value=5.7 Score=48.94 Aligned_cols=41 Identities=20% Similarity=0.612 Sum_probs=31.2
Q ss_pred eeccccccccccCcCCcccccCCCCCcccccccccccccccccCCCCCCC
Q 000404 848 WHCVYCSCQFCGRINESTCHVNDQDDSALSTLQICSLCEEKYHQSCSQTD 897 (1562)
Q Consensus 848 W~Cp~C~C~~CGk~~g~~C~r~~n~~~sd~tLL~CDQCER~YHvsCLrp~ 897 (1562)
=||..|.|.+|.+.+.+ .....-+.|+-|++|.|..|-=..
T Consensus 124 gFC~~C~C~iC~kfD~~---------~n~~~Wi~Cd~CgH~cH~dCALr~ 164 (446)
T PF07227_consen 124 GFCRRCMCCICSKFDDN---------KNTCSWIGCDVCGHWCHLDCALRH 164 (446)
T ss_pred CccccCCccccCCcccC---------CCCeeEEeccCCCceehhhhhccc
Confidence 48999999999875422 233445889999999999997543
No 126
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=60.57 E-value=1.9 Score=36.23 Aligned_cols=31 Identities=29% Similarity=0.566 Sum_probs=16.1
Q ss_pred ccccccccccccccCCCCCCCCCCcccCCC-ccccc
Q 000404 877 STLQICSLCEEKYHQSCSQTDGAVQYEPSS-LSFCG 911 (1562)
Q Consensus 877 ~tLL~CDQCER~YHvsCLrp~~~L~evPeg-~WFCs 911 (1562)
+.|+.|+.|.-.+|..|..-. ..|.+ .|+|-
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~----~~~~~~~W~C~ 33 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVS----EVPDGDDWLCD 33 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-S----S--SS-----H
T ss_pred CceEEeCCCCCcCChhhCCcc----cCCCCCcEECC
Confidence 358999999999999999854 23333 69994
No 127
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=55.42 E-value=7.9 Score=48.08 Aligned_cols=45 Identities=22% Similarity=0.546 Sum_probs=34.8
Q ss_pred CcccccceeCCCCceEecccCCCcCCcCcCCCCCCCCCCeeccccc
Q 000404 809 PNDDTCGICGDGGDLICCDGCPSTFHQNCLDIKKFPSGKWHCVYCS 854 (1562)
Q Consensus 809 ~ndd~C~VCgdGGeLLcCD~CPraFH~~CL~L~evPeGdW~Cp~C~ 854 (1562)
.+.++|++|.++|.|++|+.|..++|..|... ..|...|.|..|+
T Consensus 87 ~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~ 131 (463)
T KOG1081|consen 87 IEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCR 131 (463)
T ss_pred CCcchhccccCCCccceeccccccccccCcCc-cCcccccCCccee
Confidence 35578999999999999998888888888754 3455666666554
No 128
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=54.58 E-value=22 Score=37.81 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=57.7
Q ss_pred EEEEeeCCEEEEEEEEE--EeC-----cceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhh
Q 000404 1009 TAILERDDEIISAASIR--IHG-----KELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWT 1081 (1562)
Q Consensus 1009 caVLe~gdeIVSaASIR--I~G-----~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt 1081 (1562)
..++..+|.+|+-|.+= +|- ..++|+=.+ ..|||.||||...+.|=.+-.. --+-.+++--..|+++|+
T Consensus 39 ~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi---~k~~~~GvGR~aaK~If~~~~g-~w~Va~i~EN~PA~~fwK 114 (143)
T COG5628 39 AWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIV---RKHRRRGVGRAAAKAIFGSAWG-VWQVATVRENTPARAFWK 114 (143)
T ss_pred eeEEEECCceeeeeeeecccCCCCcccccchheEee---ehhhccchhHHHHHHHHHHhhc-eEEEEEeccCChhHHHHH
Confidence 34456788888887652 222 234554443 4699999999999999775322 234567888889999999
Q ss_pred cccCceec-chhhHhhhc
Q 000404 1082 SVFGFQPL-EVSSKQKMR 1098 (1562)
Q Consensus 1082 ~kFGF~~m-e~~ek~elr 1098 (1562)
+|-.+.. ..++++..+
T Consensus 115 -~~~~t~~i~~E~r~d~~ 131 (143)
T COG5628 115 -RVAETYPVVEEDRQDAR 131 (143)
T ss_pred -hhhcccccchhhhhccc
Confidence 7777766 555566554
No 129
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=54.28 E-value=18 Score=36.58 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=41.1
Q ss_pred ccEEEEEeeCCEEEEEEEEEEeC--cceeeeccccccccccccChhHHHHHHHHHHh
Q 000404 1006 GFFTAILERDDEIISAASIRIHG--KELAEMPFIGTRHMYRRQGMCRRLLTGIESAL 1060 (1562)
Q Consensus 1006 GfYcaVLe~gdeIVSaASIRI~G--~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L 1060 (1562)
..+.+++ ++...++|.+.--+ ..++-|-.+|..+..|++|.++.|+++|-+..
T Consensus 9 ~~~~~y~--~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 9 RLHAIYL--SEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred cceEEEE--eCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 3455553 44566677775433 58999999999999999999999999998773
No 130
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=52.10 E-value=7.5 Score=35.85 Aligned_cols=28 Identities=32% Similarity=1.132 Sum_probs=24.7
Q ss_pred cccceeCC----CCceEecccCCCcCCcCcCC
Q 000404 812 DTCGICGD----GGDLICCDGCPSTFHQNCLD 839 (1562)
Q Consensus 812 d~C~VCgd----GGeLLcCD~CPraFH~~CL~ 839 (1562)
..|.+|++ +++++.|..|...||..|..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 45999995 78899999999999999984
No 131
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=51.97 E-value=75 Score=36.32 Aligned_cols=96 Identities=14% Similarity=0.207 Sum_probs=68.8
Q ss_pred CCCccccccccEEEEEee-CCEEEEEEEEEEe------------------------------Ccceeeeccccccccccc
Q 000404 997 SNFKRLNYKGFFTAILER-DDEIISAASIRIH------------------------------GKELAEMPFIGTRHMYRR 1045 (1562)
Q Consensus 997 SnfkRLDF~GfYcaVLe~-gdeIVSaASIRI~------------------------------G~~vAEMPLVATr~~yRr 1045 (1562)
-++..+|-.-.|.++... ++++|+++.+.-. +..++|+-=+|..++||+
T Consensus 46 ~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~ 125 (241)
T TIGR03694 46 LETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRR 125 (241)
T ss_pred CcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhC
Confidence 355666665666666543 4788776655321 125778877888888987
Q ss_pred c-C---------------------------hhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCceecchhh
Q 000404 1046 Q-G---------------------------MCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQPLEVSS 1093 (1562)
Q Consensus 1046 Q-G---------------------------mcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~me~~e 1093 (1562)
. | +...|+.++-+.....|+++++.-+.+-+..++. ++||..-..-.
T Consensus 126 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~-r~G~~~~~lG~ 200 (241)
T TIGR03694 126 RKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLLS-RFGIQFRQVGP 200 (241)
T ss_pred CcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHH-HhCCceEEcCC
Confidence 3 2 4467899999999999999999999998888776 89987654333
No 132
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=47.38 E-value=9.6 Score=37.75 Aligned_cols=22 Identities=27% Similarity=0.779 Sum_probs=18.4
Q ss_pred cccccccc--ccccccCCCCCCCC
Q 000404 877 STLQICSL--CEEKYHQSCSQTDG 898 (1562)
Q Consensus 877 ~tLL~CDQ--CER~YHvsCLrp~~ 898 (1562)
+..+.|.. |...||+.|....+
T Consensus 66 G~~i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 66 GACIKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred ceeEEcCCCCCCcCCCHHHHHHCC
Confidence 45788998 99999999998754
No 133
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=46.08 E-value=12 Score=35.46 Aligned_cols=28 Identities=39% Similarity=0.954 Sum_probs=11.4
Q ss_pred cccceeCC----CCc--eEecc--cCCCcCCcCcCC
Q 000404 812 DTCGICGD----GGD--LICCD--GCPSTFHQNCLD 839 (1562)
Q Consensus 812 d~C~VCgd----GGe--LLcCD--~CPraFH~~CL~ 839 (1562)
..|.||.. .++ .+.|+ .|...||..||.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~ 38 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLS 38 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHH
Confidence 35888874 233 47898 899999999995
No 134
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=44.69 E-value=20 Score=40.04 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=39.6
Q ss_pred ceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhh
Q 000404 1030 ELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWT 1081 (1562)
Q Consensus 1030 ~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt 1081 (1562)
=+||+-|.|.+++.+|.|+++.| ..+--.|+.|||-.-+--.+..+....+
T Consensus 84 LVaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~ 134 (196)
T PF02474_consen 84 LVAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVE 134 (196)
T ss_pred eEEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHH
Confidence 37999999999999999999976 6888899999997544444444444443
No 135
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=43.89 E-value=8.7 Score=38.24 Aligned_cols=31 Identities=29% Similarity=0.651 Sum_probs=19.5
Q ss_pred eEecccCCCcCCcCcCC--CCCCCCCCeecccccc
Q 000404 823 LICCDGCPSTFHQNCLD--IKKFPSGKWHCVYCSC 855 (1562)
Q Consensus 823 LLcCD~CPraFH~~CL~--L~evPeGdW~Cp~C~C 855 (1562)
|+.+ .|...||+.|+. +..- ...=.||.|+-
T Consensus 47 lv~g-~C~H~FH~hCI~kWl~~~-~~~~~CPmCR~ 79 (85)
T PF12861_consen 47 LVWG-KCSHNFHMHCILKWLSTQ-SSKGQCPMCRQ 79 (85)
T ss_pred eeec-cCccHHHHHHHHHHHccc-cCCCCCCCcCC
Confidence 4433 499999999996 3321 22336777764
No 136
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=42.47 E-value=69 Score=37.38 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=61.1
Q ss_pred EEEe-eCCEEEEEEEEEEeCcceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccch--hhHHhhhcccCc
Q 000404 1010 AILE-RDDEIISAASIRIHGKELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAIS--ELRETWTSVFGF 1086 (1562)
Q Consensus 1010 aVLe-~gdeIVSaASIRI~G~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~--eAv~~Wt~kFGF 1086 (1562)
.+++ .++++|+++.+..++.. +.....|+..+|++.+-.-.|+-.+-+....-|++++=+=... +-+-.++..|||
T Consensus 198 ~~a~~~~g~~va~~l~~~~~~~-~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~ 276 (330)
T TIGR03019 198 LTVRLGDGVVASAVLSFYFRDE-VLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGF 276 (330)
T ss_pred EEEEeCCCCEEEEEEEEEeCCE-EEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCC
Confidence 3445 68899988887666644 4445889999999999999999999999999999998774432 234457778999
Q ss_pred eecc
Q 000404 1087 QPLE 1090 (1562)
Q Consensus 1087 ~~me 1090 (1562)
.+.+
T Consensus 277 ~~~~ 280 (330)
T TIGR03019 277 EPQP 280 (330)
T ss_pred eecc
Confidence 8764
No 137
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=40.09 E-value=3.1 Score=50.80 Aligned_cols=69 Identities=23% Similarity=0.565 Sum_probs=44.8
Q ss_pred cccceeCCC--CceEecccCCCcCCcCcCC-------CC----CCCCCCeecccc------ccccccCcCCcccccCCCC
Q 000404 812 DTCGICGDG--GDLICCDGCPSTFHQNCLD-------IK----KFPSGKWHCVYC------SCQFCGRINESTCHVNDQD 872 (1562)
Q Consensus 812 d~C~VCgdG--GeLLcCD~CPraFH~~CL~-------L~----evPeGdW~Cp~C------~C~~CGk~~g~~C~r~~n~ 872 (1562)
..|.-|+.+ |+-+-|..=.+.||..|.. |. -.-++.-||..| .|..|+..-
T Consensus 275 ~iC~~C~K~V~g~~~ac~Am~~~fHv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlekC~~Cg~~I---------- 344 (468)
T KOG1701|consen 275 GICAFCHKTVSGQGLAVEAMDQLFHVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEKCNKCGEPI---------- 344 (468)
T ss_pred hhhhhcCCcccCcchHHHHhhhhhcccceehHhhhhhhccccccccCCcccchHHHHHHHHHHhhhhhHH----------
Confidence 379999873 6666677778999998864 11 113456677776 355665521
Q ss_pred CcccccccccccccccccCCCCC
Q 000404 873 DSALSTLQICSLCEEKYHQSCSQ 895 (1562)
Q Consensus 873 ~~sd~tLL~CDQCER~YHvsCLr 895 (1562)
.+.|| .-|++.||..|+.
T Consensus 345 ---~d~iL--rA~GkayHp~CF~ 362 (468)
T KOG1701|consen 345 ---MDRIL--RALGKAYHPGCFT 362 (468)
T ss_pred ---HHHHH--HhcccccCCCceE
Confidence 12222 5689999999986
No 138
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=39.55 E-value=14 Score=36.55 Aligned_cols=29 Identities=41% Similarity=1.052 Sum_probs=25.1
Q ss_pred ccccceeCC-CCceEeccc--CCCcCCcCcCC
Q 000404 811 DDTCGICGD-GGDLICCDG--CPSTFHQNCLD 839 (1562)
Q Consensus 811 dd~C~VCgd-GGeLLcCD~--CPraFH~~CL~ 839 (1562)
...|.+|+. .|-++-|.. |...||..|..
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 457999998 588999997 99999999974
No 139
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=39.17 E-value=14 Score=47.95 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=48.1
Q ss_pred hhhHhhhcccccCCCCCCCC-----------CCCcchhHHhhccCCCCccccccccEEEEEeeCCEEEEEEEEEEeCcce
Q 000404 963 RLAVALSVMDECFLPLPDHR-----------SGINLIHNILYNFGSNFKRLNYKGFFTAILERDDEIISAASIRIHGKEL 1031 (1562)
Q Consensus 963 KLAVALsIm~ECFdPIvD~r-----------SGiDLIpdMVYnrGSnfkRLDF~GfYcaVLe~gdeIVSaASIRI~G~~v 1031 (1562)
++-..+-++.-||+--+... .+-||||=.|- ..|..-+|.+.|=
T Consensus 560 ~iPdvlcviQv~lEG~isr~si~~sL~~G~~a~GdlIpW~vs---eQf~D~~F~~l~G---------------------- 614 (1011)
T KOG2036|consen 560 AIPDVLCVIQVCLEGRISRQSIENSLRRGKRAAGDLIPWTVS---EQFQDEDFPKLSG---------------------- 614 (1011)
T ss_pred CCCcceEEEEEeecceecHHHHHHHHhccccccCCccceehh---hhhcccchhcccC----------------------
Confidence 34444566666776644432 25688888773 4577777766542
Q ss_pred eeeccccccccccccChhHHHHHHHHH
Q 000404 1032 AEMPFIGTRHMYRRQGMCRRLLTGIES 1058 (1562)
Q Consensus 1032 AEMPLVATr~~yRrQGmcR~Lm~~IE~ 1058 (1562)
|+|--|||.|+|++-|||.+-+.-|.+
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~ 641 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTD 641 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHH
Confidence 344446899999999999998877776
No 140
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=37.64 E-value=22 Score=47.39 Aligned_cols=47 Identities=32% Similarity=0.949 Sum_probs=38.7
Q ss_pred cccceeCCCCc--eEecccCCCcCCcCcCC--CCCCCCCCeeccccccccc
Q 000404 812 DTCGICGDGGD--LICCDGCPSTFHQNCLD--IKKFPSGKWHCVYCSCQFC 858 (1562)
Q Consensus 812 d~C~VCgdGGe--LLcCD~CPraFH~~CL~--L~evPeGdW~Cp~C~C~~C 858 (1562)
..|..|..+.. ++.|+.|...||.+|+. ++.++.|+|.|+.|....|
T Consensus 156 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (904)
T KOG1246|consen 156 PQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPE 206 (904)
T ss_pred hhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccccc
Confidence 46888887653 44999999999999997 6788999999999976533
No 141
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=36.66 E-value=34 Score=41.26 Aligned_cols=59 Identities=22% Similarity=0.431 Sum_probs=42.1
Q ss_pred cccccccccccccCCC--CCCCCCCccc-CCCccccccccHHHHHHHHHHhccccCCCCCcceeE
Q 000404 878 TLQICSLCEEKYHQSC--SQTDGAVQYE-PSSLSFCGKKCQEIFERLEKLLGVKHDLEGGYTWSL 939 (1562)
Q Consensus 878 tLL~CDQCER~YHvsC--Lrp~~~L~ev-Peg~WFCsk~CqeI~ekLQkLLgVK~ELEdgfSWTL 939 (1562)
.++.|+.|+.+||..| .+.. ..+. +...|+| ..|.....+++..=+..-.+...++|..
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~--~~e~p~~~~~~c-~~c~~~~~~~~~~~~l~~~~~~~~~~~~ 135 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTA--EKEAPKEDPKVC-DECKEAQDGMSESDGLSCVCRQDDSELL 135 (345)
T ss_pred hhhccccccccccccccccCch--hhcCCccccccc-cccchhhhhhhhhccceeeccccccccc
Confidence 4688999999999999 6542 3344 4578999 7999998888754444444455566654
No 142
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=36.29 E-value=72 Score=35.99 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=19.5
Q ss_pred eeccccccccccccChhHHHHHHH
Q 000404 1033 EMPFIGTRHMYRRQGMCRRLLTGI 1056 (1562)
Q Consensus 1033 EMPLVATr~~yRrQGmcR~Lm~~I 1056 (1562)
.|-=|-|.|.|||+|||+.|++.=
T Consensus 82 NLsCIl~lP~yQrkGyG~~LI~fS 105 (188)
T PF01853_consen 82 NLSCILTLPPYQRKGYGRFLIDFS 105 (188)
T ss_dssp EESEEEE-GGGTTSSHHHHHHHHH
T ss_pred eEeehhhcchhhhcchhhhhhhhH
Confidence 455688999999999999999763
No 143
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=35.88 E-value=24 Score=44.12 Aligned_cols=30 Identities=20% Similarity=0.598 Sum_probs=19.3
Q ss_pred ceEecccCCCcCCcCcCCCCCCCCCCeeccccc
Q 000404 822 DLICCDGCPSTFHQNCLDIKKFPSGKWHCVYCS 854 (1562)
Q Consensus 822 eLLcCD~CPraFH~~CL~L~evPeGdW~Cp~C~ 854 (1562)
+|.+|..|...-...|+..+ -..|||+.|.
T Consensus 4 ~L~fC~~C~~irc~~c~~~E---i~~~yCp~CL 33 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPRCVSEE---IDSYYCPNCL 33 (483)
T ss_pred cceecccccccCChhhcccc---cceeECcccc
Confidence 46777777666666666421 2358888885
No 144
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.69 E-value=24 Score=42.74 Aligned_cols=44 Identities=34% Similarity=0.682 Sum_probs=29.2
Q ss_pred cccceeCC---CCceEecccCCCcCCcCcCCCCCCCCCCeeccccccc
Q 000404 812 DTCGICGD---GGDLICCDGCPSTFHQNCLDIKKFPSGKWHCVYCSCQ 856 (1562)
Q Consensus 812 d~C~VCgd---GGeLLcCD~CPraFH~~CL~L~evPeGdW~Cp~C~C~ 856 (1562)
+.|.||-+ .|+.|-==-|...||..|++..-... .=+||.|.+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCc
Confidence 68999986 46655446689999999997321111 2257777653
No 145
>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain
Probab=35.34 E-value=11 Score=41.97 Aligned_cols=11 Identities=73% Similarity=1.081 Sum_probs=9.2
Q ss_pred CCCCCCCCCCC
Q 000404 306 VKRKRGRPPKM 316 (1562)
Q Consensus 306 vKRKRGRPPK~ 316 (1562)
.|||||||+|.
T Consensus 67 AKRKRGRPRKK 77 (219)
T PF14621_consen 67 AKRKRGRPRKK 77 (219)
T ss_pred hhhhcCCCccC
Confidence 48999999974
No 146
>smart00258 SAND SAND domain.
Probab=34.60 E-value=21 Score=34.75 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=32.1
Q ss_pred ceecCC--C-CCcccccccccCCCCccccCccceeecCCCchhhh
Q 000404 742 GIRCDC--C-SEIFTISKFDTHSKSKLCHPFQNLYFESGSSLLQC 783 (1562)
Q Consensus 742 GI~CdC--C-~kvFhpScFEaHAGs~scrPYkNIfLedGkSLleC 783 (1562)
||++.| | +++|||++|+.++|...-+-|+.-...+|++|...
T Consensus 22 G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR~~g~~Lr~L 66 (73)
T smart00258 22 GISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIRCGGSSLRTL 66 (73)
T ss_pred CcccCCccCCCEEEChHHHHhhcCCcccCCcchheeECCccHHHH
Confidence 444443 3 48999999999999887777777677889888654
No 147
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=34.48 E-value=19 Score=34.29 Aligned_cols=28 Identities=39% Similarity=0.964 Sum_probs=24.9
Q ss_pred cccceeCCC-CceEecc--cCCCcCCcCcCC
Q 000404 812 DTCGICGDG-GDLICCD--GCPSTFHQNCLD 839 (1562)
Q Consensus 812 d~C~VCgdG-GeLLcCD--~CPraFH~~CL~ 839 (1562)
..|.+|+.. |-.+-|. .|...||..|.-
T Consensus 37 ~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 37 LKCSICKKKGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred CCCcCCCCCCCeEEEEeCCCCCcEEChHHHc
Confidence 469999998 9999998 599999999984
No 148
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=32.67 E-value=5.2 Score=33.81 Aligned_cols=39 Identities=31% Similarity=0.811 Sum_probs=23.2
Q ss_pred cccceeCCC---CceEecccCCCcCCcCcCC--CCCCCCCCeeccccc
Q 000404 812 DTCGICGDG---GDLICCDGCPSTFHQNCLD--IKKFPSGKWHCVYCS 854 (1562)
Q Consensus 812 d~C~VCgdG---GeLLcCD~CPraFH~~CL~--L~evPeGdW~Cp~C~ 854 (1562)
|.|.||.+. ++.+.--.|...||..|+. +.. ...||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~----~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR----NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH----SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh----CCcCCccC
Confidence 358888752 3333333499999999986 222 12677764
No 149
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=32.14 E-value=9.3 Score=37.39 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=27.9
Q ss_pred eecCCCCCcccccccccCCCCccccCccceeecCCCchhhh
Q 000404 743 IRCDCCSEIFTISKFDTHSKSKLCHPFQNLYFESGSSLLQC 783 (1562)
Q Consensus 743 I~CdCC~kvFhpScFEaHAGs~scrPYkNIfLedGkSLleC 783 (1562)
|.|. +++|||++||.|+|....+.|+.-+..+|.+|...
T Consensus 37 I~~~--g~~~TP~eFE~~~G~~~sK~WK~SIr~~g~~L~~l 75 (82)
T PF01342_consen 37 IQCE--GRWFTPSEFERHGGKGSSKDWKRSIRCGGEPLGKL 75 (82)
T ss_dssp EEET--TEEE-HHHHHHHHTTCTCS-HHHHSEETTEEHHHH
T ss_pred EeeC--CcEECHHHHHhhcCcccCCCCCccEEECCEEHHHH
Confidence 5555 78999999999999987765554444588887653
No 150
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=32.06 E-value=51 Score=39.23 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.1
Q ss_pred eeccccccccccccChhHHHHHHH
Q 000404 1033 EMPFIGTRHMYRRQGMCRRLLTGI 1056 (1562)
Q Consensus 1033 EMPLVATr~~yRrQGmcR~Lm~~I 1056 (1562)
-|-=|-|.|.|||+|||+.||+.=
T Consensus 157 NLaCIltLPpyQrkGyG~~LI~fS 180 (290)
T PLN03238 157 NLACILTLPPYQRKGYGKFLISFA 180 (290)
T ss_pred cEEEEEecChhhhccHhHhHHHHH
Confidence 355678999999999999998753
No 151
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=30.77 E-value=25 Score=35.95 Aligned_cols=36 Identities=36% Similarity=1.096 Sum_probs=22.4
Q ss_pred cccCCCcCCcCcCC------C-CCCCCCCeeccccc----cccccCc
Q 000404 826 CDGCPSTFHQNCLD------I-KKFPSGKWHCVYCS----CQFCGRI 861 (1562)
Q Consensus 826 CD~CPraFH~~CL~------L-~evPeGdW~Cp~C~----C~~CGk~ 861 (1562)
|..|...|-..||. + +-..++.|.||.|+ |.+|.+.
T Consensus 33 C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk 79 (105)
T PF10497_consen 33 CRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRK 79 (105)
T ss_pred CccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhcc
Confidence 44456667666763 2 22356789999996 5566543
No 152
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=30.72 E-value=54 Score=33.34 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=32.6
Q ss_pred EEEEEEEeC-cceeeeccccccccccccChhHHHHHHHHHHh
Q 000404 1020 SAASIRIHG-KELAEMPFIGTRHMYRRQGMCRRLLTGIESAL 1060 (1562)
Q Consensus 1020 SaASIRI~G-~~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L 1060 (1562)
++|.+.--+ ..++-|-.+|..+..|++|.++.|+++|-+..
T Consensus 22 ~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 22 AAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 344443322 36899999999999999999999999998874
No 153
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=29.40 E-value=38 Score=41.70 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.2
Q ss_pred eccccccccccccChhHHHHHH
Q 000404 1034 MPFIGTRHMYRRQGMCRRLLTG 1055 (1562)
Q Consensus 1034 MPLVATr~~yRrQGmcR~Lm~~ 1055 (1562)
|-=|=|.|.|||+|||++|++.
T Consensus 263 laCILtLPpyQRkGYGklLIdF 284 (396)
T KOG2747|consen 263 LACILTLPPYQRKGYGKLLIDF 284 (396)
T ss_pred eeeeeecChhhhcccchhhhhh
Confidence 5567899999999999999874
No 154
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=29.31 E-value=24 Score=32.69 Aligned_cols=34 Identities=26% Similarity=0.819 Sum_probs=25.3
Q ss_pred cccccccCcCCcccccCCCCCcccccccccccccccccCCCCCCC
Q 000404 853 CSCQFCGRINESTCHVNDQDDSALSTLQICSLCEEKYHQSCSQTD 897 (1562)
Q Consensus 853 C~C~~CGk~~g~~C~r~~n~~~sd~tLL~CDQCER~YHvsCLrp~ 897 (1562)
+.|..||+.. ...+.++.|..|...||-.|....
T Consensus 6 ~~C~~Cg~~~-----------~~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 6 CKCPVCGKKF-----------KDGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred ccChhhCCcc-----------cCCCCEEECCCCCCcccHHHHhhC
Confidence 4577777642 124558999999999999998653
No 155
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=27.91 E-value=21 Score=34.05 Aligned_cols=36 Identities=25% Similarity=0.486 Sum_probs=24.1
Q ss_pred cccccccc--ccccccCCCCCCCCCCcccC----CCcccccc
Q 000404 877 STLQICSL--CEEKYHQSCSQTDGAVQYEP----SSLSFCGK 912 (1562)
Q Consensus 877 ~tLL~CDQ--CER~YHvsCLrp~~~L~evP----eg~WFCsk 912 (1562)
+..+.|.. |.+.||+.|....+...... ....||++
T Consensus 47 Ga~i~C~~~~C~~~fH~~CA~~~~~~~~~~~~~~~~~~~C~~ 88 (90)
T PF13771_consen 47 GACIGCSHPGCSRSFHVPCARKAGCFIEFDEDNGKFRIFCPK 88 (90)
T ss_pred CeEEEEeCCCCCcEEChHHHccCCeEEEEccCCCceEEEChh
Confidence 34677875 99999999998765432222 34567764
No 156
>PRK00756 acyltransferase NodA; Provisional
Probab=27.23 E-value=49 Score=36.95 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=40.7
Q ss_pred ceeeeccccccccccccChhHHHHHHHHHHhhhCCceEEEEccchhhHHhhhcccCceecchhhHhhh
Q 000404 1030 ELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAISELRETWTSVFGFQPLEVSSKQKM 1097 (1562)
Q Consensus 1030 ~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~~eAv~~Wt~kFGF~~me~~ek~el 1097 (1562)
=+||+-|.|.+++.+|+|++..+ ..+--.|+.|+|. |||..+-...+..+
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVP-----------------F~FGtVR~al~~Hv 133 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVP-----------------FAFGTVRHALRNHV 133 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCC-----------------eecccchHHHHHHH
Confidence 47999999999999999999876 6888889999984 77777755554433
No 157
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=27.21 E-value=19 Score=40.96 Aligned_cols=66 Identities=27% Similarity=0.487 Sum_probs=36.1
Q ss_pred CceEecccCCCcC--------CcCcCCCCCCCCCCeeccccccccccCcCCc-ccccCCCCCcccccccccccccccccC
Q 000404 821 GDLICCDGCPSTF--------HQNCLDIKKFPSGKWHCVYCSCQFCGRINES-TCHVNDQDDSALSTLQICSLCEEKYHQ 891 (1562)
Q Consensus 821 GeLLcCD~CPraF--------H~~CL~L~evPeGdW~Cp~C~C~~CGk~~g~-~C~r~~n~~~sd~tLL~CDQCER~YHv 891 (1562)
+++..|+.|.++| |+.|+..- ....|.+||+-..+ .....--..-.+-.-..|..|+++|-.
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~v---------kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftq 185 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDV---------KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQ 185 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHH---------HHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHh
Confidence 5677788888777 56666411 11236677763211 000000000123345789999999988
Q ss_pred CCCC
Q 000404 892 SCSQ 895 (1562)
Q Consensus 892 sCLr 895 (1562)
.|.-
T Consensus 186 rcsl 189 (267)
T KOG3576|consen 186 RCSL 189 (267)
T ss_pred hccH
Confidence 8864
No 158
>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain
Probab=26.68 E-value=28 Score=38.90 Aligned_cols=14 Identities=57% Similarity=0.909 Sum_probs=9.8
Q ss_pred cCCCCCCCCCCCCC
Q 000404 398 RLKKKRGRPPKLQG 411 (1562)
Q Consensus 398 ~~KRKRGRPpK~~g 411 (1562)
..|||||||||..+
T Consensus 66 dAKRKRGRPRKKsg 79 (219)
T PF14621_consen 66 DAKRKRGRPRKKSG 79 (219)
T ss_pred hhhhhcCCCccCCC
Confidence 44888888886543
No 159
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=25.48 E-value=31 Score=40.01 Aligned_cols=64 Identities=17% Similarity=0.559 Sum_probs=26.8
Q ss_pred ccccceeCC----------C--C-ceEecccCCCcCCcCcCCCCCCCCCCeeccccccccccCcCCcccccCCCCCcccc
Q 000404 811 DDTCGICGD----------G--G-DLICCDGCPSTFHQNCLDIKKFPSGKWHCVYCSCQFCGRINESTCHVNDQDDSALS 877 (1562)
Q Consensus 811 dd~C~VCgd----------G--G-eLLcCD~CPraFH~~CL~L~evPeGdW~Cp~C~C~~CGk~~g~~C~r~~n~~~sd~ 877 (1562)
..+|.|||. + | ..+.|..|...||.. .=.|..||......=..-.......-
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~---------------R~~Cp~Cg~~~~~~l~~~~~e~~~~~ 236 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV---------------RIKCPYCGNTDHEKLEYFTVEGEPAY 236 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE-----------------TTS-TTT---SS-EEE--------SE
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec---------------CCCCcCCCCCCCcceeeEecCCCCcE
Confidence 368999994 1 3 488898887766642 22355666543210000001112345
Q ss_pred cccccccccccc
Q 000404 878 TLQICSLCEEKY 889 (1562)
Q Consensus 878 tLL~CDQCER~Y 889 (1562)
.+..|+.|..++
T Consensus 237 rve~C~~C~~Yl 248 (290)
T PF04216_consen 237 RVEVCESCGSYL 248 (290)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEECCcccchH
Confidence 577899997765
No 160
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=25.22 E-value=72 Score=38.30 Aligned_cols=26 Identities=27% Similarity=0.699 Sum_probs=17.1
Q ss_pred cccccceeCCC-------------CceEecccCCCcCCc
Q 000404 810 NDDTCGICGDG-------------GDLICCDGCPSTFHQ 835 (1562)
Q Consensus 810 ndd~C~VCgdG-------------GeLLcCD~CPraFH~ 835 (1562)
+...|.|||.. ...+.|..|...||.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~ 224 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV 224 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc
Confidence 45689999852 136777777665553
No 161
>PLN03239 histone acetyltransferase; Provisional
Probab=24.71 E-value=66 Score=39.21 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=19.7
Q ss_pred eeccccccccccccChhHHHHHH
Q 000404 1033 EMPFIGTRHMYRRQGMCRRLLTG 1055 (1562)
Q Consensus 1033 EMPLVATr~~yRrQGmcR~Lm~~ 1055 (1562)
-|-=|-|.|.|||+|||+.||+.
T Consensus 215 NLaCIltLPpyQrkGyG~lLI~f 237 (351)
T PLN03239 215 NLACILTFPAHQRKGYGRFLIAF 237 (351)
T ss_pred ceEEEEecChhhhcchhhhhHhh
Confidence 35567899999999999999875
No 162
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=24.60 E-value=49 Score=42.09 Aligned_cols=45 Identities=24% Similarity=0.278 Sum_probs=36.6
Q ss_pred cccccceeCCCCceEecccCCCcCCcCcCCCC-CC--CCCCeeccccc
Q 000404 810 NDDTCGICGDGGDLICCDGCPSTFHQNCLDIK-KF--PSGKWHCVYCS 854 (1562)
Q Consensus 810 ndd~C~VCgdGGeLLcCD~CPraFH~~CL~L~-ev--PeGdW~Cp~C~ 854 (1562)
.+.+|+-|.-.|..|.|+.|-+.||..|+... +. -...|.|+.|.
T Consensus 59 ~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~ 106 (588)
T KOG3612|consen 59 IDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPY 106 (588)
T ss_pred CCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccc
Confidence 45679999999999999999999999999632 22 23479999885
No 163
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=24.49 E-value=1.1e+02 Score=29.95 Aligned_cols=40 Identities=30% Similarity=0.470 Sum_probs=30.1
Q ss_pred HhcCeeeeeccCCC---CCcccceeeCCCCceeeehHHHHHHH
Q 000404 523 LAAGWKIEYRPRNG---REYCDAVYVNPEGKTHWSITLAYSVL 562 (1562)
Q Consensus 523 l~agwtid~rpr~~---r~y~davyi~p~g~~ywsitkay~~~ 562 (1562)
|-.||+=..+.|+. +-=.|.+|++|.|+..=|.-.--.-|
T Consensus 8 lp~GW~R~~~~r~~g~~~~~~dV~Y~sP~GkklRs~~ev~~YL 50 (77)
T smart00391 8 LPCGWRRETKQRKSGRSAGKFDVYYISPCGKKLRSKSELARYL 50 (77)
T ss_pred CCCCcEEEEEEecCCCCCCcccEEEECCCCCeeeCHHHHHHHH
Confidence 45799999988873 45689999999999886655443333
No 164
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.
Probab=24.38 E-value=76 Score=31.04 Aligned_cols=56 Identities=30% Similarity=0.433 Sum_probs=40.3
Q ss_pred HhcCeeeeeccCC--CCCcccceeeCCCCceeeehHHHHHHHHHHhhhcCCCCCCCCCCCccc
Q 000404 523 LAAGWKIEYRPRN--GREYCDAVYVNPEGKTHWSITLAYSVLKNHYEQEGGSSDTSKTGFTFT 583 (1562)
Q Consensus 523 l~agwtid~rpr~--~r~y~davyi~p~g~~ywsitkay~~~~~~~~~~~~~~~~~~~~~~~~ 583 (1562)
|..||+=+.+.|. ++---|-.|.+|.|+..=|+-..-..|.++- ..-...+-|+|+
T Consensus 6 l~~GW~Re~vir~~~~~~~~dV~Y~aPcGKklRs~~ev~~yL~~~~-----~~~Lt~dnFsF~ 63 (73)
T cd01397 6 LELGWRRETRIRGLGGRIQGEVAYYAPCGKKLRQYPEVIKYLSKNG-----ISLLSRENFSFS 63 (73)
T ss_pred CCCCceeEEEeccCCCCccceEEEECCCCcccccHHHHHHHHHhCC-----ccCccHhHcccc
Confidence 5689999999888 5888899999999999877666655554432 122344556665
No 165
>PTZ00064 histone acetyltransferase; Provisional
Probab=24.01 E-value=67 Score=40.79 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=20.0
Q ss_pred eeccccccccccccChhHHHHHHH
Q 000404 1033 EMPFIGTRHMYRRQGMCRRLLTGI 1056 (1562)
Q Consensus 1033 EMPLVATr~~yRrQGmcR~Lm~~I 1056 (1562)
-|-=|-|.|.|||+|||+.||+.=
T Consensus 386 NLACILtLPpyQRKGYGklLIdfS 409 (552)
T PTZ00064 386 NLACILTLPCYQRKGYGKLLVDLS 409 (552)
T ss_pred ceEEEEecchhhhcchhhhhhhhh
Confidence 355678999999999999998753
No 166
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=23.91 E-value=74 Score=38.81 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=34.9
Q ss_pred ccccccChhHHHHHHHHHHhhh-CCceEEEEccchhhHHhhhcccCceec
Q 000404 1041 HMYRRQGMCRRLLTGIESALCS-LNVEKLIIPAISELRETWTSVFGFQPL 1089 (1562)
Q Consensus 1041 ~~yRrQGmcR~Lm~~IE~~L~s-LgVerLVLPA~~eAv~~Wt~kFGF~~m 1089 (1562)
..||.||||.+||++.|+..+. .|-..+-+=+--.....|. +|||..-
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~-klGY~Ld 545 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYR-KLGYELD 545 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHH-hhCeeec
Confidence 4699999999999999997764 4445554444445566777 8998753
No 167
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=22.95 E-value=39 Score=43.76 Aligned_cols=79 Identities=24% Similarity=0.522 Sum_probs=47.3
Q ss_pred cccceeCCC-CceEecccCCCcCCcCcCCC--C-------------CCCCCCeeccccccccccCcCCcccccCCCCCcc
Q 000404 812 DTCGICGDG-GDLICCDGCPSTFHQNCLDI--K-------------KFPSGKWHCVYCSCQFCGRINESTCHVNDQDDSA 875 (1562)
Q Consensus 812 d~C~VCgdG-GeLLcCD~CPraFH~~CL~L--~-------------evPeGdW~Cp~C~C~~CGk~~g~~C~r~~n~~~s 875 (1562)
.+|.+|+.+ .+.++|+.|++..|-.|+.- + .+-...|.+-.+.-..|... ...- ....
T Consensus 117 ~~c~~~~~~~~~g~~C~~C~~~vh~~C~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~~~~~~~~~~-----~~~~-~~~~ 190 (634)
T KOG1169|consen 117 KSCGSCGVGIKQGLCCDWCGRTVHERCVRRADPECQCKCDLGRLRKIVLDHPWVKGNAGEAKCDQC-----LKSV-KADQ 190 (634)
T ss_pred ccccchhhcccCceeeccccchHHHHHHhhcCcccccccccccccceeecCcccccccCCccchhh-----hccc-cccc
Confidence 456667665 56899999999999999851 1 11233455555522211110 0000 0112
Q ss_pred cccccccccccccccCCCCCC
Q 000404 876 LSTLQICSLCEEKYHQSCSQT 896 (1562)
Q Consensus 876 d~tLL~CDQCER~YHvsCLrp 896 (1562)
..++..|..|-+.+|..|...
T Consensus 191 ~~~~~~c~~~~~~~h~~~~~~ 211 (634)
T KOG1169|consen 191 GLTGPRCGWCQIRVHDKCKSE 211 (634)
T ss_pred cccccccceeeeeeecchHHH
Confidence 234678999999999999764
No 168
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=21.83 E-value=1e+02 Score=32.72 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=40.3
Q ss_pred ccccccccChhHHHHHHHHHHhhhCCceEEEEccc-hhhHHhhhcccCceecchhhHhhhcccceEeeCC
Q 000404 1039 TRHMYRRQGMCRRLLTGIESALCSLNVEKLIIPAI-SELRETWTSVFGFQPLEVSSKQKMRNMSLLVFPG 1107 (1562)
Q Consensus 1039 Tr~~yRrQGmcR~Lm~~IE~~L~sLgVerLVLPA~-~eAv~~Wt~kFGF~~me~~ek~elr~~~ll~F~G 1107 (1562)
+....||+|+|+.|++.+.+.-. +....+-++-. +.+++|-...||....-+ ...++++|+|
T Consensus 54 Vhes~QR~G~Gk~LF~~ML~~e~-~~p~~~a~DrPS~Kll~Fl~Khy~L~~~ip------Q~NNFVVf~~ 116 (120)
T PF05301_consen 54 VHESRQRRGYGKRLFDHMLQEEN-VSPHQLAIDRPSPKLLSFLKKHYGLQRYIP------QSNNFVVFEG 116 (120)
T ss_pred EEeceeccCchHHHHHHHHHHcC-CCcccceecCCcHHHHHHHHHhcCCCcCCC------CCccEEEehH
Confidence 34577999999999999887633 33344444433 346677666788765533 2467777765
No 169
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=21.38 E-value=66 Score=36.01 Aligned_cols=34 Identities=35% Similarity=0.923 Sum_probs=0.0
Q ss_pred ccceeCCCCc--------eEecccCCCcCCcCcCCCCCCCCCCeecccc
Q 000404 813 TCGICGDGGD--------LICCDGCPSTFHQNCLDIKKFPSGKWHCVYC 853 (1562)
Q Consensus 813 ~C~VCgdGGe--------LLcCD~CPraFH~~CL~L~evPeGdW~Cp~C 853 (1562)
.|.+|.+.+- ...|..|...||..|..... ||.|
T Consensus 154 iCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~~~-------CpkC 195 (202)
T PF13901_consen 154 ICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRKKS-------CPKC 195 (202)
T ss_pred CCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCCCC-------CCCc
No 170
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=21.26 E-value=24 Score=33.53 Aligned_cols=24 Identities=29% Similarity=0.771 Sum_probs=16.0
Q ss_pred ccCCCcCCcCcCC--CCCCCCCCeeccccc
Q 000404 827 DGCPSTFHQNCLD--IKKFPSGKWHCVYCS 854 (1562)
Q Consensus 827 D~CPraFH~~CL~--L~evPeGdW~Cp~C~ 854 (1562)
..|...||..|+. +... ..||.|+
T Consensus 48 ~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred cccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 4699999999996 3222 2677764
No 171
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=20.27 E-value=53 Score=31.78 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.3
Q ss_pred cccccccccccChhHHHHHHHHHH
Q 000404 1036 FIGTRHMYRRQGMCRRLLTGIESA 1059 (1562)
Q Consensus 1036 LVATr~~yRrQGmcR~Lm~~IE~~ 1059 (1562)
-|=+.+.+||+|+.+.||+++-..
T Consensus 10 RIWV~~~~RR~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 10 RIWVSPSHRRKGIATRLLDAAREN 33 (70)
T ss_pred EEEeChhhhhhhHHHHHHHHHHHh
Confidence 344678999999999999998875
No 172
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=20.27 E-value=3.4e+02 Score=30.38 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=49.6
Q ss_pred ccccccEEEEEee--CCEEEE-----EEEEEEeCc--ceeeeccccccccccccChhHHHHHHHHHHhhhCCce
Q 000404 1002 LNYKGFFTAILER--DDEIIS-----AASIRIHGK--ELAEMPFIGTRHMYRRQGMCRRLLTGIESALCSLNVE 1066 (1562)
Q Consensus 1002 LDF~GfYcaVLe~--gdeIVS-----aASIRI~G~--~vAEMPLVATr~~yRrQGmcR~Lm~~IE~~L~sLgVe 1066 (1562)
=.|.-.|.+-+.. ++++|+ -+.|||++. ..+|+=|+.....+|.+++.=.|+++|=+.+-..||=
T Consensus 72 Pg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~ 145 (162)
T PF01233_consen 72 PGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIW 145 (162)
T ss_dssp TT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--
T ss_pred cCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCce
Confidence 3455566666654 678887 358999884 8899999999999999999999999999987776653
Done!