Query 000404
Match_columns 1562
No_of_seqs 433 out of 1631
Neff 3.4
Searched_HMMs 29240
Date Tue Mar 26 16:39:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000404.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_183-186//hhsearch_pdb/000404hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 132.5 6.4 92 808-914 4-101 (111)
2 4gne_A Histone-lysine N-methyl 1.0 1 1 131.6 6.6 91 805-913 9-101 (107)
3 2kwj_A Zinc finger protein DPF 1.0 1 1 131.4 4.6 93 812-919 2-110 (114)
4 3v43_A Histone acetyltransfera 1.0 1 1 123.9 3.1 92 810-915 4-110 (112)
5 2lbm_A Transcriptional regulat 1.0 1 1 113.5 0.6 95 735-856 9-117 (142)
6 3u5n_A E3 ubiquitin-protein li 1.0 1 1 104.4 3.5 50 806-855 2-53 (207)
7 3o36_A Transcription intermedi 1.0 1 1 102.0 3.8 49 808-856 1-51 (184)
8 3ask_A E3 ubiquitin-protein li 1.0 1 1 99.1 4.3 110 764-914 110-222 (226)
9 1fp0_A KAP-1 corepressor; PHD 1.0 1 1 96.9 4.8 51 806-856 20-72 (88)
10 2ro1_A Transcription intermedi 1.0 1 1 96.5 3.6 46 811-856 2-49 (189)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=132.54 Aligned_cols=92 Identities=30% Similarity=0.786 Sum_probs=77.7
Q ss_pred CCCCCCCCEECCCCCE---EECCCCCCCCCCCCCCCCC--CCCCCEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8765436200778952---8524579967867579878--99997012465-4222367677644458989835645401
Q 000404 808 DPNDDTCGICGDGGDL---ICCDGCPSTFHQNCLDIKK--FPSGKWHCVYC-SCQFCGRINESTCHVNDQDDSALSTLQI 881 (1562)
Q Consensus 808 D~NdD~C~VCgdGGeL---LcCD~CPsaFH~~CLgL~e--vPeGdW~Cp~C-~C~~CGk~~gs~C~r~~n~~~sd~tII~ 881 (1562)
+.|++.|.+|+++|+| |+|+.|+++||+.||++.. ++.+.|+|+.| .|.+|+... .+..++.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~------------~~~~ll~ 71 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSG------------EDSKMLV 71 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCS------------CCTTEEE
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCEEE
T ss_conf 8997999578998887588599999977396770886554456686587678262347658------------9877658
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 465322145788788888744688753235120
Q 000404 882 CSLCEEKYHQSCSQTDGAVQYEPSSLSFCGKKC 914 (1562)
Q Consensus 882 CdQCER~YHvsCLk~~~~l~e~Peg~WFCsk~C 914 (1562)
|++|++.||..|+.+. +...|.+.|||+ .|
T Consensus 72 Cd~C~~~yH~~Cl~pp--l~~~P~g~W~C~-~C 101 (111)
T 2ysm_A 72 CDTCDKGYHTFCLQPV--MKSVPTNGWKCK-NC 101 (111)
T ss_dssp CSSSCCEEEGGGSSSC--CSSCCSSCCCCH-HH
T ss_pred CCCCCCHHHHHHCCCC--CCCCCCCCCCCC-CC
T ss_conf 9999808869865876--566889882992-88
No 2
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=1.00 E-value=1 Score=131.64 Aligned_cols=91 Identities=29% Similarity=0.803 Sum_probs=79.9
Q ss_pred CCCCCCCCCCCEECCCCCEEECC--CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89887654362007789528524--5799678675798789999701246542223676776444589898356454014
Q 000404 805 DGEDPNDDTCGICGDGGDLICCD--GCPSTFHQNCLDIKKFPSGKWHCVYCSCQFCGRINESTCHVNDQDDSALSTLQIC 882 (1562)
Q Consensus 805 ~~eD~NdD~C~VCgdGGeLLcCD--~CPsaFH~~CLgL~evPeGdW~Cp~C~C~~CGk~~gs~C~r~~n~~~sd~tII~C 882 (1562)
.....++++|.+|+++|+||+|| .||++||+.||+|..+|.|+|+|+.|.|..|++.. .+.|
T Consensus 9 ~~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k~~----------------~~~C 72 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAA----------------VSFC 72 (107)
T ss_dssp -CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCSBC----------------CEEC
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC----------------CCCC
T ss_conf 886889799984799784757799999926522518687579988889899988177989----------------8674
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6532214578878888874468875323512
Q 000404 883 SLCEEKYHQSCSQTDGAVQYEPSSLSFCGKK 913 (1562)
Q Consensus 883 dQCER~YHvsCLk~~~~l~e~Peg~WFCsk~ 913 (1562)
..|++.||..|+.. .+...+...|+|+..
T Consensus 73 ~~Cp~sfC~~c~~g--~l~~~~~~~~~c~~~ 101 (107)
T 4gne_A 73 EFCPHSFCKDHEKG--ALVPSALEGRLCCSE 101 (107)
T ss_dssp SSSSCEECTTTCTT--SCEECTTTTCEECTT
T ss_pred CCCCCCHHHHCCCC--CCEECCCCCCEECCC
T ss_conf 77871011211587--311027889666677
No 3
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=131.36 Aligned_cols=93 Identities=29% Similarity=0.732 Sum_probs=76.0
Q ss_pred CCCCEECC----------CCCEEECCCCCCCCCCCCCCCC-----CCCCCCEECCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43620077----------8952852457996786757987-----899997012465-4222367677644458989835
Q 000404 812 DTCGICGD----------GGDLICCDGCPSTFHQNCLDIK-----KFPSGKWHCVYC-SCQFCGRINESTCHVNDQDDSA 875 (1562)
Q Consensus 812 D~C~VCgd----------GGeLLcCD~CPsaFH~~CLgL~-----evPeGdW~Cp~C-~C~~CGk~~gs~C~r~~n~~~s 875 (1562)
++|.+|.. +++||+|+.|+++||+.||++. .++.+.|+|+.| .|.+|+... .
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~------------~ 69 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSE------------N 69 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCT------------T
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC------------C
T ss_conf 8086588975344467999998692989983232138784664311687751756627337563468------------8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 64540146532214578878888874468875323512089999
Q 000404 876 LSTLQICSLCEEKYHQSCSQTDGAVQYEPSSLSFCGKKCQEIFE 919 (1562)
Q Consensus 876 d~tII~CdQCER~YHvsCLk~~~~l~e~Peg~WFCsk~CkeI~e 919 (1562)
+..|+.|+.|++.||+.|+.+. +...|.+.|||+ .|...+.
T Consensus 70 ~~~ll~Cd~C~~~yH~~Cl~pp--l~~~P~g~W~C~-~C~~~~~ 110 (114)
T 2kwj_A 70 DDQLLFCDDCDRGYHMYCLNPP--VAEPPEGSWSCH-LCWELLK 110 (114)
T ss_dssp TTTEEECSSSCCEEETTTSSSC--CSSCCSSCCCCH-HHHHHHH
T ss_pred CCCEEECCCCCCCCCCCCCCCC--CCCCCCCCEECC-CCCCHHH
T ss_conf 8745774898941025045987--467889781992-4103442
No 4
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=123.86 Aligned_cols=92 Identities=23% Similarity=0.729 Sum_probs=73.9
Q ss_pred CCCCCCEEC---------CCCCEEECCCCCCCCCCCCCCCC-----CCCCCCEECCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 654362007---------78952852457996786757987-----899997012465-422236767764445898983
Q 000404 810 NDDTCGICG---------DGGDLICCDGCPSTFHQNCLDIK-----KFPSGKWHCVYC-SCQFCGRINESTCHVNDQDDS 874 (1562)
Q Consensus 810 NdD~C~VCg---------dGGeLLcCD~CPsaFH~~CLgL~-----evPeGdW~Cp~C-~C~~CGk~~gs~C~r~~n~~~ 874 (1562)
....|.+|. ++++||.|+.|+++||++||++. .++.+.|+|+.| .|.+|+....
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~----------- 72 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGK----------- 72 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCC-----------
T ss_pred CCCCCCCCCCCHHHCCCCCCHHCEEHHHCCCCCCCCHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----------
T ss_conf 676131038933427689911163753449988970353888999875424653011775446668688-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 56454014653221457887888887446887532351208
Q 000404 875 ALSTLQICSLCEEKYHQSCSQTDGAVQYEPSSLSFCGKKCQ 915 (1562)
Q Consensus 875 sd~tII~CdQCER~YHvsCLk~~~~l~e~Peg~WFCsk~Ck 915 (1562)
.+..++.|+.|++.||..|+.+. +...|.+.|||+ .|+
T Consensus 73 ~~~~ll~Cd~C~~~yH~~Cl~p~--l~~~P~~~W~C~-~C~ 110 (112)
T 3v43_A 73 NADNMLFCDSCDRGFHMECCDPP--LTRMPKGMWICQ-ICR 110 (112)
T ss_dssp TTCCCEECTTTCCEECGGGCSSC--CSSCCSSCCCCT-TTS
T ss_pred CCCCEEECCCCCCEEECCCCCCC--CCCCCCCCEECC-CCC
T ss_conf 85656874899891566358999--898999885797-878
No 5
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=1.00 E-value=1 Score=113.54 Aligned_cols=95 Identities=25% Similarity=0.630 Sum_probs=68.7
Q ss_pred ECEEECCCEECCCCCCCCCCCCC---CCC--CCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02561795012989980124432---237--8873345764302137973134454210112333335853345689887
Q 000404 735 QGRIARDGIRCDCCSEIFTISKF---DTH--SKSKLCHPFQNLYFESGSSLLQCILDSWNKQDESKRKGFHFVNFDGEDP 809 (1562)
Q Consensus 735 eG~ItgdGI~CsCC~kvFSlScF---EaH--AGsk~ckPYkNIfLedGkSLleCaieAw~kQ~kserKgf~~Vdv~~eD~ 809 (1562)
+|.. ++|.|.+|+..++++.+ ..| .+.+.|+++.+.|++++.+ .++|.
T Consensus 9 ~~~~--~~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~~~~-------------------------~d~Dg 61 (142)
T 2lbm_A 9 DGLH--GIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS-------------------------RDSDG 61 (142)
T ss_dssp SSCC--CCCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHSCCC-------------------------BCTTS
T ss_pred CCCC--CCCEECCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHCCCCE-------------------------ECCCC
T ss_conf 6775--79885489986565456632129875664247789887237813-------------------------16888
Q ss_pred CCCCCCEECCCCCEEECCCCCCCCCCCCCC--CC-----C--CCCCCEECCCCCCC
Q ss_conf 654362007789528524579967867579--87-----8--99997012465422
Q 000404 810 NDDTCGICGDGGDLICCDGCPSTFHQNCLD--IK-----K--FPSGKWHCVYCSCQ 856 (1562)
Q Consensus 810 NdD~C~VCgdGGeLLcCD~CPsaFH~~CLg--L~-----e--vPeGdW~Cp~C~C~ 856 (1562)
++++|.+|++||+|||||.||++||..||. +. + .|+++|+|+.|.+.
T Consensus 62 ~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCEECCCCCCCCEEECCCCCCEEEHHHCCCCCCHHHHHHCCCCCCCCEEECCCCC
T ss_conf 87800003999847868998973127454888873666542468999882126685
No 6
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=104.40 Aligned_cols=50 Identities=48% Similarity=1.325 Sum_probs=45.5
Q ss_pred CCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCC--CCCCCCCCEECCCCCC
Q ss_conf 9887654362007789528524579967867579--8789999701246542
Q 000404 806 GEDPNDDTCGICGDGGDLICCDGCPSTFHQNCLD--IKKFPSGKWHCVYCSC 855 (1562)
Q Consensus 806 ~eD~NdD~C~VCgdGGeLLcCD~CPsaFH~~CLg--L~evPeGdW~Cp~C~C 855 (1562)
+++.|+++|.+|+++|+||+||+|+++||+.||. +..+|.|+|+|+.|.-
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEEC
T ss_conf 8788889898889999367769999843871589998888998878684268
No 7
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=1.00 E-value=1 Score=101.99 Aligned_cols=49 Identities=45% Similarity=1.308 Sum_probs=44.4
Q ss_pred CCCCCCCCEECCCCCEEECCCCCCCCCCCCCC--CCCCCCCCEECCCCCCC
Q ss_conf 87654362007789528524579967867579--87899997012465422
Q 000404 808 DPNDDTCGICGDGGDLICCDGCPSTFHQNCLD--IKKFPSGKWHCVYCSCQ 856 (1562)
Q Consensus 808 D~NdD~C~VCgdGGeLLcCD~CPsaFH~~CLg--L~evPeGdW~Cp~C~C~ 856 (1562)
++|+++|.+|+++|+||+||+|+++||+.||. +..+|.|+|+|+.|...
T Consensus 1 ~~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 1 SPNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp CCSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
T ss_conf 999995411799990566299995308113689878799988789255686
No 8
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=99.12 Aligned_cols=110 Identities=20% Similarity=0.420 Sum_probs=63.3
Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 334576430213797313445421011233333585334568--988765436200778952852457996786757987
Q 000404 764 KLCHPFQNLYFESGSSLLQCILDSWNKQDESKRKGFHFVNFD--GEDPNDDTCGICGDGGDLICCDGCPSTFHQNCLDIK 841 (1562)
Q Consensus 764 k~ckPYkNIfLedGkSLleCaieAw~kQ~kserKgf~~Vdv~--~eD~NdD~C~VCgdGGeLLcCD~CPsaFH~~CLgL~ 841 (1562)
..+.++.||+|+ |.+|..|++.........+..+....... ....+...|..|
T Consensus 110 ~~~~~~a~i~l~-g~sl~~c~i~f~~e~~~ie~~~~~~~~~~~~~~r~~~~~C~~c------------------------ 164 (226)
T 3ask_A 110 TARELYANVVLG-DDSLNDCRIIFVDEVFKIERPGEGSPMVDNPMRRKSGPSCKHC------------------------ 164 (226)
T ss_dssp SCEEEEEEEECS-SSEEEEEEESCTTCCBCCCCSSSSCCCCSCCCCCCCSCCCTTT------------------------
T ss_pred CCCCEEEEEEEC-CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------------
T ss_conf 312224688766-8754341578731433211335553333463334578644323------------------------
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 89999701246542223676776444589898356454014653221457887888887446887-53235120
Q 000404 842 KFPSGKWHCVYCSCQFCGRINESTCHVNDQDDSALSTLQICSLCEEKYHQSCSQTDGAVQYEPSS-LSFCGKKC 914 (1562)
Q Consensus 842 evPeGdW~Cp~C~C~~CGk~~gs~C~r~~n~~~sd~tII~CdQCER~YHvsCLk~~~~l~e~Peg-~WFCsk~C 914 (1562)
.+.+.|.|..|.|..|+... ....|+.|+.|++.||..|+.++ +...|.+ .|||+ .|
T Consensus 165 -~~~~~w~C~~c~C~vC~~~~------------~~~~lL~CD~C~~~yH~~CL~PP--L~~vP~G~~W~Cp-~C 222 (226)
T 3ask_A 165 -KDDVNRLCRVCACHLCGGRQ------------DPDKQLMCDECDMAFHIYCLDPP--LSSVPSEDEWYCP-EC 222 (226)
T ss_dssp -TTCTTSCCTTTSCSSSCCCC------------C--CCEECSSSCCEECSCC--CC--CCSCCSSSCCCCG-GG
T ss_pred -CCCCCEECCCCCCCCCCCCC------------CCCCEEECCCCCCCEECCCCCCC--CCCCCCCCCCCCC-CC
T ss_conf -57867766888886889979------------99876883899941007567887--4569899887893-87
No 9
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=96.89 Aligned_cols=51 Identities=29% Similarity=0.858 Sum_probs=46.0
Q ss_pred CCCCCCCCCCEECCCCCEEECCCCCCCCCCCCC--CCCCCCCCCEECCCCCCC
Q ss_conf 988765436200778952852457996786757--987899997012465422
Q 000404 806 GEDPNDDTCGICGDGGDLICCDGCPSTFHQNCL--DIKKFPSGKWHCVYCSCQ 856 (1562)
Q Consensus 806 ~eD~NdD~C~VCgdGGeLLcCD~CPsaFH~~CL--gL~evPeGdW~Cp~C~C~ 856 (1562)
..+.++++|.+|+++|+||+||.|+++||++|+ .+..+|.|+|+|+.|...
T Consensus 20 ~~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 20 TLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 33889981837699997788999997241632898978786997677264487
No 10
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=96.49 Aligned_cols=46 Identities=30% Similarity=0.917 Sum_probs=42.6
Q ss_pred CCCCCEECCCCCEEECCCCCCCCCCCCCC--CCCCCCCCEECCCCCCC
Q ss_conf 54362007789528524579967867579--87899997012465422
Q 000404 811 DDTCGICGDGGDLICCDGCPSTFHQNCLD--IKKFPSGKWHCVYCSCQ 856 (1562)
Q Consensus 811 dD~C~VCgdGGeLLcCD~CPsaFH~~CLg--L~evPeGdW~Cp~C~C~ 856 (1562)
++.|.+|+++|+||+||+|+++||++|+. +..+|.|+|+|+.|...
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 882764799994568999983331022898756689987889270477
Done!