BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000406
(1560 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/1250 (35%), Positives = 703/1250 (56%), Gaps = 32/1250 (2%)
Query: 330 VGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMK 389
V + ++F+Y+ LD + +L+G + A+I+G ALP FG+ + A+ + + M
Sbjct: 33 VSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMS 92
Query: 390 DAEKICLL------MTVLA-------AIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVL 436
+A+K + MT A A V++ AY++++ W L R +IR K+ A++
Sbjct: 93 EADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIM 152
Query: 437 RQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVS 496
Q+I +FD ++ ++ D+++I E +G+K+ F + TF G+ +GF R WK++
Sbjct: 153 NQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLT 211
Query: 497 LVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAV 556
LV+L+++P++ + + T KE +Y +AG+VAE+ +++IRTV +F +
Sbjct: 212 LVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271
Query: 557 RYAGLLADSIPXXXXXXXXXXXXXXVIYLVTYATWALAFWYGSILVARKELSGGAAIACF 616
RY L ++ +L+ YA++ALAFWYG+ LV KE S G + F
Sbjct: 272 RYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVF 331
Query: 617 FGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFK 676
F V +G + + FA AA VF+IID P ID ++ G K ++ G +EFK
Sbjct: 332 FSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFK 391
Query: 677 GVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG 736
+ F+YPSR E IL+ LNL + S +T+ALVG SG GKST L++R YDP G++++DG
Sbjct: 392 NIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG 451
Query: 737 HDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISE 796
D++++ V++LR IG+V QEP+LFAT+I EN+ G+E+ + FI +
Sbjct: 452 QDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMK 511
Query: 797 LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK 856
LP +DT VG+RG QLSGGQKQRIA+ARA++++P+ILLLDE TSALD+ESE++VQ A+DK
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571
Query: 857 ISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEA--- 913
GRTTIVIAHRL+TV+NA+ I D G +VE GNH +L+ G Y LV +
Sbjct: 572 AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEI 631
Query: 914 -VSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKP 972
+ K KD ++ S + + R + ++ T E +
Sbjct: 632 ELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGP---HDQDRKLSTKEALDEDV 688
Query: 973 RPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRD 1032
P F I KL E+ + G + G + F +I + + V+ + +R
Sbjct: 689 PPASFW--RILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQ 746
Query: 1033 VRYLSLALVGLGFGCIIFMT-GQQGFC-GWAGTKLTMRVRELLFRSILKQEPGWFDFEEN 1090
L +L+ L G I F+T QGF G AG LT R+R ++F+S+L+Q+ WFD +N
Sbjct: 747 NSNL-FSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKN 805
Query: 1091 STGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTL 1150
+TG L +RL+ D+ + G R +V+ +++ G+ +SL+ W+LTL+ A+ P
Sbjct: 806 TTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIA 865
Query: 1151 GASYLSLIINVGPKI-DNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKK 1209
A + + + G + D + IA+ A+ N RTV + + +++ + ++L P +
Sbjct: 866 IAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYR 925
Query: 1210 KSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVG 1269
++K++ + G+T F+Q MY +Y FGAYLV Q +F V +F +V + +VG
Sbjct: 926 NAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVG 985
Query: 1270 QLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLG-IELKMVTFTYPSRPE 1328
Q++ APD + A + +++I ++ P ID+ + L+ + G ++ V F YP+RP
Sbjct: 986 QVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPS 1045
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388
+ VL+ L+VK G +ALVG SG GKSTV+ L++RFYDP G V ++G +++++NV+WL
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 1389 RKQTALVGQEPALFAGTIRDNIALGNPKXXXX--XXXXXXXXXYIHKFISSLPQGYETQV 1446
R Q +V QEP LF +I +NIA G+ IH+FI SLP Y T+V
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRV 1165
Query: 1447 GESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIV 1506
G+ G QLSGGQKQRIAIARA+++ + K VQ+AL K + T IV
Sbjct: 1166 GDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIV 1225
Query: 1507 VAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEA 1556
+AHRLSTI+ A++I V+++G V E+G+H+ LLA G+Y S+V + A
Sbjct: 1226 IAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ--KGIYFSMVSVQAGA 1273
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/1250 (35%), Positives = 703/1250 (56%), Gaps = 32/1250 (2%)
Query: 330 VGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYSYFFGNFVNKIANESSDPDKTQMMK 389
V + ++F+Y+ LD + +L+G + A+I+G ALP FG+ + A+ + + M
Sbjct: 33 VSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMS 92
Query: 390 DAEKICLL------MTVLA-------AIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVL 436
+A+K + MT A A V++ AY++++ W L R +IR K+ A++
Sbjct: 93 EADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIM 152
Query: 437 RQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVS 496
Q+I +FD ++ ++ D+++I E +G+K+ F + TF G+ +GF R WK++
Sbjct: 153 NQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLT 211
Query: 497 LVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAV 556
LV+L+++P++ + + T KE +Y +AG+VAE+ +++IRTV +F +
Sbjct: 212 LVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271
Query: 557 RYAGLLADSIPXXXXXXXXXXXXXXVIYLVTYATWALAFWYGSILVARKELSGGAAIACF 616
RY L ++ +L+ YA++ALAFWYG+ LV KE S G + F
Sbjct: 272 RYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVF 331
Query: 617 FGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGKIEFK 676
F V +G + + FA AA VF+IID P ID ++ G K ++ G +EFK
Sbjct: 332 FSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFK 391
Query: 677 GVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG 736
+ F+YPSR E IL+ LNL + S +T+ALVG SG GKST L++R YDP G++++DG
Sbjct: 392 NIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG 451
Query: 737 HDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISE 796
D++++ V++LR IG+V QEP+LFAT+I EN+ G+E+ + FI +
Sbjct: 452 QDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMK 511
Query: 797 LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK 856
LP +DT VG+RG QLSGGQKQRIA+ARA++++P+ILLLDE TSALD+ESE++VQ A+DK
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571
Query: 857 ISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEA--- 913
GRTTIVIAHRL+TV+NA+ I D G +VE GNH +L+ G Y LV +
Sbjct: 572 AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEI 631
Query: 914 -VSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKP 972
+ K KD ++ S + + R + ++ T E +
Sbjct: 632 ELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGP---HDQDRKLSTKEALDEDV 688
Query: 973 RPRKFQLSEIWKLQRPEFAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRD 1032
P F I KL E+ + G + G + F +I + + V+ + +R
Sbjct: 689 PPASFW--RILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQ 746
Query: 1033 VRYLSLALVGLGFGCIIFMT-GQQGFC-GWAGTKLTMRVRELLFRSILKQEPGWFDFEEN 1090
L +L+ L G I F+T QGF G AG LT R+R ++F+S+L+Q+ WFD +N
Sbjct: 747 NSNL-FSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKN 805
Query: 1091 STGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTL 1150
+TG L +RL+ D+ + G R +V+ +++ G+ +SL+ W+LTL+ A+ P
Sbjct: 806 TTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIA 865
Query: 1151 GASYLSLIINVGPKI-DNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKK 1209
A + + + G + D + IA+ A+ N RTV + + +++ + ++L P +
Sbjct: 866 IAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYR 925
Query: 1210 KSVKRSQILGLTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVG 1269
++K++ + G+T F+Q MY +Y FGAYLV Q +F V +F +V + +VG
Sbjct: 926 NAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVG 985
Query: 1270 QLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLG-IELKMVTFTYPSRPE 1328
Q++ APD + A + +++I ++ P ID+ + L+ + G ++ V F YP+RP
Sbjct: 986 QVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPS 1045
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388
+ VL+ L+VK G +ALVG SG GKSTV+ L++RFYDP G V ++G +++++NV+WL
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 1389 RKQTALVGQEPALFAGTIRDNIALGNPKXXXX--XXXXXXXXXYIHKFISSLPQGYETQV 1446
R Q +V QEP LF +I +NIA G+ IH+FI SLP Y T+V
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRV 1165
Query: 1447 GESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIV 1506
G+ G QLSGGQKQRIAIARA+++ + K VQ+AL K + T IV
Sbjct: 1166 GDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIV 1225
Query: 1507 VAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEA 1556
+AHRLSTI+ A++I V+++G V E+G+H+ LLA G+Y S+V + A
Sbjct: 1226 IAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ--KGIYFSMVSVQAGA 1273
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/1293 (32%), Positives = 678/1293 (52%), Gaps = 58/1293 (4%)
Query: 306 GDGRNNDPELVSPYNEDDAEVAKPVGLFSLFKYSTKLDMILVLLGCIGALINGGALPWYS 365
GD +++ E + + EV V + L++Y+T L+ +L+ +G + A+I G LP S
Sbjct: 37 GDNIDSNGE-IKITRDAKEEVVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMS 95
Query: 366 YFFGN----FVNK---IANESS-------DPDKTQMMKDAEKICLLMTVLAAIVMMGAYL 411
G F+N+ I N S + KT D + + + +
Sbjct: 96 ILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQI 155
Query: 412 EITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKV 471
+TC+ V E+ R+R ++++++LRQ+I++FDT S + + + ++ +++E G+K+
Sbjct: 156 TVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGT-LATKLFDNLERVKEGTGDKI 214
Query: 472 AHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRA 531
+ FI G+ V F SW+++LV+L+VTP+ CG A +E Y +A
Sbjct: 215 GMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKA 274
Query: 532 GSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPXXXXXXXXXXXXXXVIYLVTYATW 591
G V E+ ISSIRTV S + RY+ + ++ + + ++
Sbjct: 275 GKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISF 334
Query: 592 ALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIID 651
ALAF+ G V L+ G + F V +G L L+ A AA+ ++E++D
Sbjct: 335 ALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLD 394
Query: 652 RVPEIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSG 711
R P ID + GRK + G I + V F YPSRP+ ILR +NL + + +T+ALVG+SG
Sbjct: 395 RKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSG 454
Query: 712 GGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLM 771
GKST+ +L+ R+YD KG IT+DG D++ + +++LR + +V QEP LF +I EN+ +
Sbjct: 455 CGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISL 514
Query: 772 GKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR 831
GKE FI LP GY+T VGDRGTQLSGGQKQRIA+ARA++++P+
Sbjct: 515 GKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK 574
Query: 832 ILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIG 891
ILLLDE TSALD+ESE IVQQA+DK + GRTTI+IAHRL+T++NA+ I+ G VVE+G
Sbjct: 575 ILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVG 634
Query: 892 NHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFSIYEKSVIEVSRSRYANEVS- 950
+HR L+ + G Y+DLV ++ + + K E S+ ++ SR A+E+
Sbjct: 635 DHRALMAQQGLYYDLV--TAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDD 692
Query: 951 -----KSKYFKSM--------------QAEIQTVEEEQQKPRPRKFQLSEIWKLQRPEFA 991
+S S+ + + +++E ++ +K L EI RP
Sbjct: 693 IMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHAL 752
Query: 992 MIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRD----VRYLSLALV-GLGFG 1046
+ G G I + + + V+ + A L + + +L LA G+
Sbjct: 753 SLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGI--- 809
Query: 1047 CIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISF 1106
C MT F G A LT +R LFR++L Q G+FD +N++G + +RL+ D +
Sbjct: 810 CSFLMT---FFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNL 866
Query: 1107 RSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPKID 1166
R+ + RFS ++ L S G+G++ W++ L+ A+ P YL G +
Sbjct: 867 RTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVK 926
Query: 1167 NSS-YAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFS 1225
++S +A + IA A+ N+RTV + ++ +F + L P K+++K + I GL+ G +
Sbjct: 927 SASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCA 986
Query: 1226 QGAMYVAYTFTLWFGAYLVKQGHASFGV--VYKIFLILVLSSFSVGQLAGLAPDTSMAAT 1283
+Y+ T G L+ + V ++ + +S+ ++G P+ + A
Sbjct: 987 SSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATF 1046
Query: 1284 AIPAVLQITKRKPLIDNVKGRKLERSKPLG-IELKMVTFTYPSRPEVTVLKDFCLKVKGG 1342
A + + ++ ID++ E+ K G + K V F YP RPE+ +LK V+ G
Sbjct: 1047 AGGIIFGMLRKISKIDSLSLAG-EKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPG 1105
Query: 1343 SMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALF 1402
+ALVG SG GKSTV+ L++RFYD G++ I+G +++ +N + R Q A+V QEP LF
Sbjct: 1106 QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF 1165
Query: 1403 AGTIRDNIALG-NPKXXXXXXXXXXX-XXYIHKFISSLPQGYETQVGESGVQLSGGQKQR 1460
+I +NI G +P IH FI+ LP+G+ET+VG+ G QLSGGQKQR
Sbjct: 1166 DCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQR 1225
Query: 1461 IAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIVVAHRLSTIREANMI 1520
IAIARA+++ ++ K VQ+AL + + T IV+AHRL+T+ A+ I
Sbjct: 1226 IAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCI 1285
Query: 1521 AVVRDGAVVEYGSHETLLASHLNGVYASLVRAE 1553
AVV +G ++E G+H L++ G Y L + +
Sbjct: 1286 AVVSNGTIIEKGTHTQLMSEK--GAYYKLTQKQ 1316
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 317 bits (812), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 202/561 (36%), Positives = 309/561 (55%), Gaps = 37/561 (6%)
Query: 366 YFFGNFVNKI-ANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAY---LEITCWRLVGE 421
+F G ++ I N + D + ++CL L+A+ + GA + + + G+
Sbjct: 40 FFLGKIIDVIYTNPTVDYSD-----NLTRLCL---GLSAVFLCGAAANAIRVYLMQTSGQ 91
Query: 422 RSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTF 481
R R+RT ++LRQ++AFFD + T ++++ +SSD A + + E ++
Sbjct: 92 RIVNRLRTSLFSSILRQEVAFFD-KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQA 150
Query: 482 ICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISS 541
G ++ F S ++ VLSV P + + Y LT + S +A +AE+ I +
Sbjct: 151 SVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGN 210
Query: 542 IRTVFSFVAEDHFAVRYAGLL--------ADSIPXXXXXXXXXXXXXXVIYLVTYATWAL 593
+RTV +F E +YA + ++ ++ V Y L
Sbjct: 211 VRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLL 270
Query: 594 AFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRV 653
GS + ELS A + G+++GG S++++ +G A R++E+++R
Sbjct: 271 ---MGSAHMTVGELSSFLMYAFWVGISIGGLS-----SFYSELMKGLGAGGRLWELLERE 322
Query: 654 PEIDPYNSEGRKLS--SVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSG 711
P++ P+N EG L+ S G +EFK V FAYP+RPE I + +L IPS ALVG SG
Sbjct: 323 PKL-PFN-EGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSG 380
Query: 712 GGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLM 771
GKSTV +L+ R YDP G I+LDGHD++ L WLR++IG V QEPILF+ SI EN+
Sbjct: 381 SGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAY 440
Query: 772 GKENXXXXXXXXXXXXXXXH---SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828
G ++ +FI P G++T VG++G LSGGQKQRIA+ARA++K
Sbjct: 441 GADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500
Query: 829 DPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVV 888
+P+ILLLDE TSALD+E+E +VQ+A+D++ GRT +VIAHRL+T+KNAN + VLDQG +
Sbjct: 501 NPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKIT 560
Query: 889 EIGNHRQLLER-GGAYHDLVK 908
E G H +LL + G Y L+
Sbjct: 561 EYGKHEELLSKPNGIYRKLMN 581
Score = 262 bits (669), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 180/559 (32%), Positives = 281/559 (50%), Gaps = 28/559 (5%)
Query: 1011 PLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQG------FCGWAGTK 1064
P LG+ + V + + ++ L L L +F+ G +G +
Sbjct: 39 PFFLGKIIDVIYTNPTVDYSDNLTRLCLGL------SAVFLCGAAANAIRVYLMQTSGQR 92
Query: 1065 LTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSA 1124
+ R+R LF SIL+QE +FD + TG L++RLS D+ + + S L + A
Sbjct: 93 IVNRLRTSLFSSILRQEVAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQA 150
Query: 1125 AVGLGVSLVLNWRL-TLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSN 1183
+VG+ + ++ L T V + + P ++ A + K+ S A+A+ +A + N
Sbjct: 151 SVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGN 210
Query: 1184 IRTVTTFSAQ----EQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWF 1239
+RTV F + E+ + D + +K++ R+ G T G S + ++ L+
Sbjct: 211 VRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT-GLSGNLIVLS---VLYK 266
Query: 1240 GAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLID 1299
G L+ H + G + + S+G L+ + A + ++ +R+P +
Sbjct: 267 GGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLP 326
Query: 1300 NVKGRKL-ERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTV 1358
+G L E+S +E K V F YP+RPEV + +DF L + GS+ ALVG SGSGKSTV
Sbjct: 327 FNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTV 386
Query: 1359 IWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXX 1418
+ L+ R YDP G + ++G D+R++N WLR + V QEP LF+ +I +NIA G
Sbjct: 387 LSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPS 446
Query: 1419 XXXXXXXXXXXYIHK---FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXX 1475
+ FI + PQG+ T VGE GV LSGGQKQRIAIARA+LK ++
Sbjct: 447 SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILL 506
Query: 1476 XXXXXXXXXXXXXKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHE 1535
VQ+AL ++ T +V+AHRLSTI+ ANM+AV+ G + EYG HE
Sbjct: 507 LDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHE 566
Query: 1536 TLLASHLNGVYASLVRAET 1554
LL S NG+Y L+ ++
Sbjct: 567 ELL-SKPNGIYRKLMNKQS 584
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 315 bits (808), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 201/561 (35%), Positives = 308/561 (54%), Gaps = 37/561 (6%)
Query: 366 YFFGNFVNKI-ANESSDPDKTQMMKDAEKICLLMTVLAAIVMMGAY---LEITCWRLVGE 421
+F G ++ I N + D + ++CL L+A+ + GA + + + G+
Sbjct: 71 FFLGKIIDVIYTNPTVD-----YSDNLTRLCL---GLSAVFLCGAAANAIRVYLMQTSGQ 122
Query: 422 RSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTF 481
R R+RT ++LRQ++AFFD + T ++++ +SSD A + + E ++
Sbjct: 123 RIVNRLRTSLFSSILRQEVAFFD-KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQA 181
Query: 482 ICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISS 541
G ++ F S ++ VLSV P + + Y LT + S +A +AE+ I +
Sbjct: 182 SVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGN 241
Query: 542 IRTVFSFVAEDHFAVRYAGLL--------ADSIPXXXXXXXXXXXXXXVIYLVTYATWAL 593
+RTV +F E +YA + ++ ++ V Y L
Sbjct: 242 VRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLL 301
Query: 594 AFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRV 653
GS + ELS A + G+++GG S++++ +G A R++E+++R
Sbjct: 302 ---MGSAHMTVGELSSFLMYAFWVGISIGGLS-----SFYSELMKGLGAGGRLWELLERE 353
Query: 654 PEIDPYNSEGRKLS--SVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSG 711
P++ P+N EG L+ S G +EFK V FAYP+RPE I + +L IPS ALVG SG
Sbjct: 354 PKL-PFN-EGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSG 411
Query: 712 GGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLM 771
GKSTV +L+ R YDP G I+LDGHD++ L WLR++IG V QEPILF+ SI EN+
Sbjct: 412 SGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAY 471
Query: 772 GKENXXXXXXXXXXXXXXXH---SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK 828
G ++ +FI P G++T VG++G LSGGQKQRIA+ARA++K
Sbjct: 472 GADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 531
Query: 829 DPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVV 888
+P+ILLLDE TSALD+E+E +VQ+A+D++ GRT +VIAH L+T+KNAN + VLDQG +
Sbjct: 532 NPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKIT 591
Query: 889 EIGNHRQLLER-GGAYHDLVK 908
E G H +LL + G Y L+
Sbjct: 592 EYGKHEELLSKPNGIYRKLMN 612
Score = 260 bits (664), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 179/559 (32%), Positives = 280/559 (50%), Gaps = 28/559 (5%)
Query: 1011 PLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQQG------FCGWAGTK 1064
P LG+ + V + + ++ L L L +F+ G +G +
Sbjct: 70 PFFLGKIIDVIYTNPTVDYSDNLTRLCLGL------SAVFLCGAAANAIRVYLMQTSGQR 123
Query: 1065 LTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSA 1124
+ R+R LF SIL+QE +FD + TG L++RLS D+ + + S L + A
Sbjct: 124 IVNRLRTSLFSSILRQEVAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQA 181
Query: 1125 AVGLGVSLVLNWRL-TLVAAALTPFTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSN 1183
+VG+ + ++ L T V + + P ++ A + K+ S A+A+ +A + N
Sbjct: 182 SVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGN 241
Query: 1184 IRTVTTFSAQ----EQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGAMYVAYTFTLWF 1239
+RTV F + E+ + D + +K++ R+ G T G S + ++ L+
Sbjct: 242 VRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT-GLSGNLIVLS---VLYK 297
Query: 1240 GAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLID 1299
G L+ H + G + + S+G L+ + A + ++ +R+P +
Sbjct: 298 GGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLP 357
Query: 1300 NVKGRKL-ERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTV 1358
+G L E+S +E K V F YP+RPEV + +DF L + GS+ ALVG SGSGKSTV
Sbjct: 358 FNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTV 417
Query: 1359 IWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXX 1418
+ L+ R YDP G + ++G D+R++N WLR + V QEP LF+ +I +NIA G
Sbjct: 418 LSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPS 477
Query: 1419 XXXXXXXXXXXYIHK---FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXX 1475
+ FI + PQG+ T VGE GV LSGGQKQRIAIARA+LK ++
Sbjct: 478 SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILL 537
Query: 1476 XXXXXXXXXXXXXKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHE 1535
VQ+AL ++ T +V+AH LSTI+ ANM+AV+ G + EYG HE
Sbjct: 538 LDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHE 597
Query: 1536 TLLASHLNGVYASLVRAET 1554
LL S NG+Y L+ ++
Sbjct: 598 ELL-SKPNGIYRKLMNKQS 615
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 248 bits (632), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 157/463 (33%), Positives = 245/463 (52%), Gaps = 18/463 (3%)
Query: 452 IMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGM 511
++ + +D+ Q ++ + + + + T I ++ F K++L L + P +
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILT-- 177
Query: 512 AYKAVYVGLTSKEEASYRRAGSVAE------QAISSIRTVFSFVAEDHFAVRYAGLLADS 565
VYV + + R+ ++AE + + I V SF ED+ A + +
Sbjct: 178 ----VYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNF 233
Query: 566 IPXXXXXXXXXXXXXXVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFG-VNVGGR 624
+ I VT + G+ L ++ G +A F G + +
Sbjct: 234 LTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGT-LAAFVGYLELLFG 292
Query: 625 GLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSV-SGKIEFKGVTFAYP 683
L ++ F Q + RVF++ID + D N G + + G+I+ V+F Y
Sbjct: 293 PLRRLVASFTTLTQSFASMDRVFQLIDE--DYDIKNGVGAQPIEIKQGRIDIDHVSFQYN 350
Query: 684 SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQ 743
E IL+ +NL I +T+A VG SGGGKST+ LI RFYD T G I +DGH++K
Sbjct: 351 DN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 409
Query: 744 VKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDT 803
LR QIG+V Q+ ILF+ ++ EN+L+G+ H FI LP GYDT
Sbjct: 410 TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDT 469
Query: 804 QVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTT 863
+VG+RG +LSGGQKQR+++AR + +P IL+LDE TSALD ESESI+Q+A+D +S RTT
Sbjct: 470 EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTT 529
Query: 864 IVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDL 906
+++AHRL+T+ +A+ IVV++ G +VE G HR+L+ + GAY L
Sbjct: 530 LIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572
Score = 206 bits (524), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 161/568 (28%), Positives = 261/568 (45%), Gaps = 20/568 (3%)
Query: 990 FAMIIFGFILGMHAGAILSIFPLILGQALQVYFDDTASTLRRDVRYLSLALVGLGFGCII 1049
FA II G I I + PL++ A+ ++ A T V +L++A +G I
Sbjct: 17 FATIIVGII----KFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIA---IGIALFI 69
Query: 1050 FMTG-------QQGFCGWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSID 1102
F+ +Q W K+ +R+ L+ L+ F + N G ++SR+ D
Sbjct: 70 FVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNH-LQALSARF-YANNQVGQVISRVIND 127
Query: 1103 SISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSL-IINV 1161
+ + + + + + L + L+ +LTL A + PF + Y+ +
Sbjct: 128 VEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRK 187
Query: 1162 GPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLT 1221
+ + + A+ V I V +F+ ++ +FDK + +++K ++ +
Sbjct: 188 LTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYS 247
Query: 1222 LGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMA 1281
+ + GAYL G + G + L L + +L + +
Sbjct: 248 FAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQS 307
Query: 1282 ATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKG 1341
++ V Q+ I N G + K I++ V+F Y E +LKD L ++
Sbjct: 308 FASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEK 366
Query: 1342 GSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPAL 1401
G VA VG SG GKST+I LI RFYD G+++I+G ++++ LR Q LV Q+ L
Sbjct: 367 GETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL 426
Query: 1402 FAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESGVQLSGGQKQRI 1461
F+ T+++NI LG P H FI +LPQGY+T+VGE GV+LSGGQKQR+
Sbjct: 427 FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL 486
Query: 1462 AIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIVVAHRLSTIREANMIA 1521
+IAR L + +Q+AL +SK TT++VAHRLSTI A+ I
Sbjct: 487 SIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIV 546
Query: 1522 VVRDGAVVEYGSHETLLASHLNGVYASL 1549
V+ +G +VE G+H L+A G Y L
Sbjct: 547 VIENGHIVETGTHRELIAKQ--GAYEHL 572
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 244 bits (624), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 157/516 (30%), Positives = 260/516 (50%), Gaps = 10/516 (1%)
Query: 398 MTVLAAIVMMG--AYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHG 455
+ V+ +++ G +Y+ C V + +R + ++ ++FFD + ST ++
Sbjct: 69 LVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSR 127
Query: 456 ISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKA 515
I+ D Q+ + + I + + F SW++S++++ + P++
Sbjct: 128 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSK 187
Query: 516 VYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPXXXXXXXX 575
+ ++ + + + + AEQ + + V F ++ R+ +
Sbjct: 188 RFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSA 247
Query: 576 XXXXXXVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQ 635
+I L+ A + S L+ G F + R L + AQ
Sbjct: 248 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 307
Query: 636 FAQGTVAATRVFEIIDRVPEIDPYNSEGRK-LSSVSGKIEFKGVTFAYPSRPETVILRSL 694
F +G A +F I+D E D EG++ + +G +EF+ VTF YP R + LR++
Sbjct: 308 FQRGMAACQTLFTILDSEQEKD----EGKRVIERATGDVEFRNVTFTYPGR-DVPALRNI 362
Query: 695 NLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMV 754
NL IP+ KT+ALVG SG GKST+ +LI RFYD +G I +DGHDL+ + LR Q+ +V
Sbjct: 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALV 422
Query: 755 GQEPILFATSILENVLMGK-ENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGDRGTQLS 813
Q LF ++ N+ + E FI+++ G DT +G+ G LS
Sbjct: 423 SQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482
Query: 814 GGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATV 873
GGQ+QRIA+ARA+++D IL+LDE TSALD+ESE +Q A+D++ RT++VIAHRL+T+
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 542
Query: 874 KNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKL 909
+ A+ IVV++ G +VE G H LLE G Y L K+
Sbjct: 543 EKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKM 578
Score = 211 bits (537), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 171/565 (30%), Positives = 272/565 (48%), Gaps = 32/565 (5%)
Query: 1003 AGAILSIFPLILGQA--------LQVYFDDT-ASTLRRDVRYLSLALVGLGF--GCIIFM 1051
AG I++ LIL A L+ DD T R + ++ L ++GL G ++
Sbjct: 25 AGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMILRGITSYV 84
Query: 1052 TGQQGFC-GWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVL 1110
+ +C W K+ M +R LF ++ +FD + STG L+SR++ DS V
Sbjct: 85 SS---YCISWVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDS---EQVA 136
Query: 1111 GDRFSVLLMGLSSAAVGLGVSLVL---NWRLTLVAAALTPFTLGASYL--SLIINVGPKI 1165
L+ + A +G+ +++ +W+L+++ L P A + N+ +
Sbjct: 137 SSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNM 196
Query: 1166 DNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFS 1225
N+ + ++ A + + V F QE FDK + + + +K ++
Sbjct: 197 QNT-MGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPII 255
Query: 1226 QGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAI 1285
Q +A F L+ ++ + G + +F ++ + L + A
Sbjct: 256 QLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAAC 315
Query: 1286 PAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMV 1345
+ I + D K R +ER+ +E + VTFTYP R +V L++ LK+ G V
Sbjct: 316 QTLFTILDSEQEKDEGK-RVIERATG-DVEFRNVTFTYPGR-DVPALRNINLKIPAGKTV 372
Query: 1346 ALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGT 1405
ALVG SGSGKST+ LI RFYD ++G+++++G DLRE + LR Q ALV Q LF T
Sbjct: 373 ALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDT 432
Query: 1406 IRDNIALG-NPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIA 1464
+ +NIA + Y FI+ + G +T +GE+GV LSGGQ+QRIAIA
Sbjct: 433 VANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIA 492
Query: 1465 RAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVR 1524
RA+L+ S + + +Q AL ++ K T++V+AHRLSTI +A+ I VV
Sbjct: 493 RALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVE 552
Query: 1525 DGAVVEYGSHETLLASHLNGVYASL 1549
DG +VE G+H LL GVYA L
Sbjct: 553 DGVIVERGTHNDLLEHR--GVYAQL 575
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 244 bits (624), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 158/516 (30%), Positives = 261/516 (50%), Gaps = 10/516 (1%)
Query: 398 MTVLAAIVMMG--AYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHG 455
+ V+ +++ G +Y+ C V + +R + ++ +AFFD + ST ++
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSR 127
Query: 456 ISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKA 515
I+ D Q+ + + I + + F SW++S++++ + P++
Sbjct: 128 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 187
Query: 516 VYVGLTSKEEASYRRAGSVAEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPXXXXXXXX 575
+ ++ + + + + AEQ + + V F ++ R+ +
Sbjct: 188 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 247
Query: 576 XXXXXXVIYLVTYATWALAFWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQ 635
+I L+ A + S L+ G F + R L + AQ
Sbjct: 248 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 307
Query: 636 FAQGTVAATRVFEIIDRVPEIDPYNSEGRK-LSSVSGKIEFKGVTFAYPSRPETVILRSL 694
F +G A +F I+D E D EG++ + +G +EF+ VTF YP R E LR++
Sbjct: 308 FQRGMAACQTLFAILDSEQEKD----EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNI 362
Query: 695 NLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMV 754
NL IP+ KT+ALVG SG GKST+ +LI RFYD +G I +DGHDL+ + LR Q+ +V
Sbjct: 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALV 422
Query: 755 GQEPILFATSILENVLMGK-ENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGDRGTQLS 813
Q LF ++ N+ + E FI+++ G DT +G+ G LS
Sbjct: 423 SQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482
Query: 814 GGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATV 873
GGQ+QRIA+ARA+++D IL+LDE TSALD+ESE +Q A+D++ RT++VIAHRL+T+
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 542
Query: 874 KNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKL 909
+ A+ IVV++ G +VE G H +LL + G Y L K+
Sbjct: 543 EQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKM 578
Score = 216 bits (551), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 173/562 (30%), Positives = 271/562 (48%), Gaps = 26/562 (4%)
Query: 1003 AGAILSIFPLILGQA--------LQVYFDDTASTLRRDVRYLSLALVGLGFGCIIFMTGQ 1054
AG I++ LIL A L+ DD R V L + LV +G + +T
Sbjct: 25 AGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV-LLWMPLVVIGLMILRGITSY 83
Query: 1055 -QGFC-GWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRSVLGD 1112
+C W K+ M +R LF ++ +FD + STG L+SR++ DS V
Sbjct: 84 ISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDS---EQVASS 138
Query: 1113 RFSVLLMGLSSAAVGLGVSLVL---NWRLTLVAAALTPF-TLGASYLSLIINVGPKIDNS 1168
L+ + A +G+ +++ +W+L+++ L P ++ +S K +
Sbjct: 139 SSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQN 198
Query: 1169 SYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGFSQGA 1228
+ + ++ A + + V F QE FDK ++ + + +K ++ Q
Sbjct: 199 TMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLI 258
Query: 1229 MYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAV 1288
+A F L+ ++ + G + +F ++ + L + A +
Sbjct: 259 ASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTL 318
Query: 1289 LQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALV 1348
I + D K R ++R+ +E + VTFTYP R EV L++ LK+ G VALV
Sbjct: 319 FAILDSEQEKDEGK-RVIDRATG-DLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALV 375
Query: 1349 GGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRD 1408
G SGSGKST+ LI RFYD ++G ++++G DLRE + LR Q ALV Q LF T+ +
Sbjct: 376 GRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVAN 435
Query: 1409 NIALGNPKX-XXXXXXXXXXXXYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAI 1467
NIA + Y FI+ + G +T +GE+GV LSGGQ+QRIAIARA+
Sbjct: 436 NIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495
Query: 1468 LKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGA 1527
L+ S + + +Q AL ++ K T++V+AHRLSTI +A+ I VV DG
Sbjct: 496 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGI 555
Query: 1528 VVEYGSHETLLASHLNGVYASL 1549
+VE G+H LLA H GVYA L
Sbjct: 556 IVERGTHSELLAQH--GVYAQL 575
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 233 bits (593), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 151/496 (30%), Positives = 240/496 (48%), Gaps = 6/496 (1%)
Query: 415 CWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHF 474
C V ++R + + + FFD E ST ++ I+ D Q+ +
Sbjct: 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-STGGLLSRITYDSEQVAGATSRALVSI 146
Query: 475 AHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSV 534
+ I T+ F SW++SLV++ V P++ F + ++ + + S
Sbjct: 147 VREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSS 206
Query: 535 AEQAISSIRTVFSFVAEDHFAVRYAGLLADSIPXXXXXXXXXXXXXXVIYLVTYATWALA 594
AEQ + + V S+ ++ R+ + VI ++
Sbjct: 207 AEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAV 266
Query: 595 FWYGSILVARKELSGGAAIACFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVP 654
+ S+ R EL+ G F + R L S ++F +G A +F ++D
Sbjct: 267 LFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326
Query: 655 EIDPYNSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGK 714
E D E + V+G+++ K VTF Y + E L ++ IP KT+ALVG SG GK
Sbjct: 327 ERDNGKYEAER---VNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGK 382
Query: 715 STVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKE 774
ST+ L RFYD G I LDGHD++ ++ LR +V Q LF +I N+ E
Sbjct: 383 STIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE 442
Query: 775 NXXXXXXXXXXXXXX-XHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRIL 833
FI +P G DT +G+ GT LSGGQ+QR+A+ARA+++D +L
Sbjct: 443 GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVL 502
Query: 834 LLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNH 893
+LDE TSALD+ESE +Q A+D++ +T +VIAHRL+T++ A+ I+V+D+G ++E G H
Sbjct: 503 ILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562
Query: 894 RQLLERGGAYHDLVKL 909
LL + GAY L ++
Sbjct: 563 ADLLAQDGAYAQLHRI 578
Score = 183 bits (464), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 161/571 (28%), Positives = 261/571 (45%), Gaps = 36/571 (6%)
Query: 1003 AGAILSIFPLILGQALQVYFDDTASTLRRD---------VRYLSLALVGLGFGCIIFMTG 1053
AG ++S L++ A Y L + +R L ++GL +F+ G
Sbjct: 25 AGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGL-----MFVRG 79
Query: 1054 QQGF----C-GWAGTKLTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSISFRS 1108
GF C W + M++R LF + +FD + STG L+SR++ DS
Sbjct: 80 LSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDS---EQ 134
Query: 1109 VLG--DRFSVLLMGLSSAAVGLGVSLVLN-WRLTLVAAALTPFT-LGASYLSLIINVGPK 1164
V G R V ++ ++ +GL + N W+L+LV + P S++S +
Sbjct: 135 VAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISR 194
Query: 1165 IDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQILGLTLGF 1224
++ +S A + + V ++ QE FDK + +++++K +
Sbjct: 195 NMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPV 254
Query: 1225 SQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIFLILVLSSFSVGQLAGLAPDTSMAATA 1284
Q +A L+ + + + G +F + + L + + A
Sbjct: 255 IQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAA 314
Query: 1285 IPAVLQITKRKPLIDNVKGRKLERSKPLG-IELKMVTFTYPSRPEVTVLKDFCLKVKGGS 1343
+ + + DN K E + G +++K VTFTY + E L + G
Sbjct: 315 CQTLFGLMDLETERDN---GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGK 370
Query: 1344 MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFA 1403
VALVG SGSGKST+ L RFYD + G + ++G D+R+ + LR+ ALV Q LF
Sbjct: 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN 430
Query: 1404 GTIRDNIALG-NPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESGVQLSGGQKQRIA 1462
TI +NIA + + +FI ++PQG +T +GE+G LSGGQ+QR+A
Sbjct: 431 DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVA 490
Query: 1463 IARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIVVAHRLSTIREANMIAV 1522
IARA+L+ + V + +Q AL ++ K T +V+AHRLSTI +A+ I V
Sbjct: 491 IARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILV 550
Query: 1523 VRDGAVVEYGSHETLLASHLNGVYASLVRAE 1553
V +G ++E G H LLA +G YA L R +
Sbjct: 551 VDEGEIIERGRHADLLAQ--DGAYAQLHRIQ 579
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 225 bits (573), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 147/482 (30%), Positives = 244/482 (50%), Gaps = 7/482 (1%)
Query: 426 RIRTKYLRAVLRQDIAFFDTEVSTSDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGY 485
R+R + + R + FFD DI+ + +D+ I V+G + F I T
Sbjct: 111 RLRKELFEKLQRVPVGFFD-RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAV 169
Query: 486 TVGFLRSWKVSLVVLSVTPLMMFCGMAYKAVYVGLTSKEEASYRRAGSVAEQAISSIRTV 545
+ F + +SLV LS+ PL + + + + + + E+ IS + +
Sbjct: 170 IMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVI 229
Query: 546 FSFVAEDHFAVRYAGLLADSIPXXXXXXXXXXXXXXVIYLVTYATWALAFWYGSILVARK 605
F E+ ++ + ++ +V +AL +G L A K
Sbjct: 230 KLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWL-ALK 288
Query: 606 ELSGGAAIACFFGVNVG-GRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGR 664
++ IA F G + R L + F +A R+FEI+D E D + +
Sbjct: 289 DIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD--DPDAV 346
Query: 665 KLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERF 724
+L V G+IEFK V F+Y + +L+ + I + +ALVG +G GK+T+ L+ RF
Sbjct: 347 ELREVRGEIEFKNVWFSYDKKKP--VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
Query: 725 YDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXX 784
YD +G I +DG D++ ++ LR+ IG+V Q+ ILF+T++ EN+ G
Sbjct: 405 YDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEA 464
Query: 785 XXXXXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS 844
FI LP GY+T + D G LS GQ+Q +A+ RA + +P+IL+LDE TS +D+
Sbjct: 465 AKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDT 524
Query: 845 ESESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYH 904
++E +Q A+ K+ G+T+I+IAHRL T+KNA+ I+VL G +VE+G H +L+++ G Y+
Sbjct: 525 KTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYY 584
Query: 905 DL 906
+L
Sbjct: 585 EL 586
Score = 189 bits (481), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 154/583 (26%), Positives = 283/583 (48%), Gaps = 41/583 (7%)
Query: 987 RPEFAMIIFGFILGMHAGAILSIF-PLILGQALQVYFDDTASTLRRDVRYLSLALVGLGF 1045
RP +I F+ + +IL + P ++G+ + V F R D+ + ++G +
Sbjct: 33 RPHTFTLIMVFVF-VTVSSILGVLSPYLIGKTIDVVF----VPRRFDLLPRYMLILGTIY 87
Query: 1046 GCIIFMTGQQGFCGWAGTK-LTMRVRELLFRSILKQEPGWFDFEENSTGVLVSRLSIDSI 1104
+ QG ++ + R+R+ LF + + G+FD G ++SR+ D
Sbjct: 88 ALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVD 145
Query: 1105 SFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLVAAALTPFTLGASYLSLIINVGPK 1164
+ +VLG+ G+ + A + + +N L+LV ++ P T+ ++ I++ +
Sbjct: 146 NINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTV---LITQIVSSQTR 202
Query: 1165 I----DNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQIL-G 1219
+ + + I +S + + F+ +E+ + FD+ ++E +K ++QI G
Sbjct: 203 KYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDR-VNESLRKVGTKAQIFSG 261
Query: 1220 LTLGFSQGAMYVAYTFTLWFGAYLVKQGHASFGVVYKIF---------LILVLSSFSVGQ 1270
+ + + FG +L + + G + L + + F++ Q
Sbjct: 262 VLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQ 321
Query: 1271 LAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVT 1330
+A LA +A I +L + + K D V+ R++ IE K V F+Y + V
Sbjct: 322 MA-LA-----SAERIFEILDLEEEKDDPDAVELREVRGE----IEFKNVWFSYDKKKPV- 370
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
LKD +K G VALVG +GSGK+T++ L+ RFYD ++G+++++G+D+R+I LR
Sbjct: 371 -LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRS 429
Query: 1391 QTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESG 1450
+V Q+ LF+ T+++N+ GNP + FI LP+GYET + ++G
Sbjct: 430 SIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNG 489
Query: 1451 VQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIVVAHR 1510
LS GQ+Q +AI RA L ++ K +Q A+ K+ + T+I++AHR
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHR 549
Query: 1511 LSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAE 1553
L+TI+ A++I V+RDG +VE G H+ L+ G Y L ++
Sbjct: 550 LNTIKNADLIIVLRDGEIVEMGKHDELIQKR--GFYYELFTSQ 590
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 210 bits (534), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 155/242 (64%), Gaps = 4/242 (1%)
Query: 673 IEFKGVTFAY-PSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I F+ + F Y P P VIL ++NL I + + +VG SG GKST+ LI+RFY P G
Sbjct: 4 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXH 791
+ +DGHDL WLR Q+G+V Q+ +L SI++N+ + H
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
FISEL GY+T VG++G LSGGQ+QRIA+ARA++ +P+IL+ DE TSALD ESE ++
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLL-ERGGAYHDLVKLA 910
+ + KI GRT I+IAHRL+TVKNA+ I+V+++G +VE G H++LL E Y L +L
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 241
Query: 911 SE 912
S+
Sbjct: 242 SD 243
Score = 164 bits (415), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 126/227 (55%), Gaps = 3/227 (1%)
Query: 1314 IELKMVTFTY-PSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I + + F Y P P +L + L +K G ++ +VG SGSGKST+ LIQRFY P G+
Sbjct: 4 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIH 1432
V+I+G DL + WLR+Q +V Q+ L +I DNI+L NP H
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQ 1492
FIS L +GY T VGE G LSGGQ+QRIAIARA++ ++ +
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1493 DALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLA 1539
+ K+ K T I++AHRLST++ A+ I V+ G +VE G H+ LL+
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 209 bits (533), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 155/242 (64%), Gaps = 4/242 (1%)
Query: 673 IEFKGVTFAY-PSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I F+ + F Y P P VIL ++NL I + + +VG SG GKST+ LI+RFY P G
Sbjct: 2 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXH 791
+ +DGHDL WLR Q+G+V Q+ +L SI++N+ + H
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
FISEL GY+T VG++G LSGGQ+QRIA+ARA++ +P+IL+ DE TSALD ESE ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLL-ERGGAYHDLVKLA 910
+ + KI GRT I+IAHRL+TVKNA+ I+V+++G +VE G H++LL E Y L +L
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Query: 911 SE 912
S+
Sbjct: 240 SD 241
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 134/243 (55%), Gaps = 4/243 (1%)
Query: 1314 IELKMVTFTY-PSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I + + F Y P P +L + L +K G ++ +VG SGSGKST+ LIQRFY P G+
Sbjct: 2 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIH 1432
V+I+G DL + WLR+Q +V Q+ L +I DNI+L NP H
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQ 1492
FIS L +GY T VGE G LSGGQ+QRIAIARA++ ++ +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1493 DALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552
+ K+ K T I++AHRLST++ A+ I V+ G +VE G H+ LL S +Y+ L +
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQL 238
Query: 1553 ETE 1555
+++
Sbjct: 239 QSD 241
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 209 bits (533), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 155/242 (64%), Gaps = 4/242 (1%)
Query: 673 IEFKGVTFAY-PSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I F+ + F Y P P VIL ++NL I + + +VG SG GKST+ LI+RFY P G
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXH 791
+ +DGHDL WLR Q+G+V Q+ +L SI++N+ + H
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
FISEL GY+T VG++G LSGGQ+QRIA+ARA++ +P+IL+ DE TSALD ESE ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLL-ERGGAYHDLVKLA 910
+ + KI GRT I+IAHRL+TVKNA+ I+V+++G +VE G H++LL E Y L +L
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
Query: 911 SE 912
S+
Sbjct: 246 SD 247
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 134/243 (55%), Gaps = 4/243 (1%)
Query: 1314 IELKMVTFTY-PSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I + + F Y P P +L + L +K G ++ +VG SGSGKST+ LIQRFY P G+
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIH 1432
V+I+G DL + WLR+Q +V Q+ L +I DNI+L NP H
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQ 1492
FIS L +GY T VGE G LSGGQ+QRIAIARA++ ++ +
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1493 DALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552
+ K+ K T I++AHRLST++ A+ I V+ G +VE G H+ LL S +Y+ L +
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQL 244
Query: 1553 ETE 1555
+++
Sbjct: 245 QSD 247
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 4/242 (1%)
Query: 673 IEFKGVTFAY-PSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I F+ + F Y P P VIL ++NL I + + +VG +G GKST+ LI+RFY P G
Sbjct: 4 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXH 791
+ +DGHDL WLR Q+G+V Q+ +L SI++N+ + H
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
FISEL GY+T VG++G LSGGQ+QRIA+ARA++ +P+IL+ DE TSALD ESE ++
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLL-ERGGAYHDLVKLA 910
+ + KI GRT I+IAHRL+TVKNA+ I+V+++G +VE G H++LL E Y L +L
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 241
Query: 911 SE 912
S+
Sbjct: 242 SD 243
Score = 163 bits (412), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 126/228 (55%), Gaps = 3/228 (1%)
Query: 1314 IELKMVTFTY-PSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I + + F Y P P +L + L +K G ++ +VG +GSGKST+ LIQRFY P G+
Sbjct: 4 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIH 1432
V+I+G DL + WLR+Q +V Q+ L +I DNI+L NP H
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQ 1492
FIS L +GY T VGE G LSGGQ+QRIAIARA++ ++ +
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1493 DALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLAS 1540
+ K+ K T I++AHRLST++ A+ I V+ G +VE G H+ LL+
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 229
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 159/257 (61%), Gaps = 7/257 (2%)
Query: 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
G+IEF+ V F+Y ET L+ ++ + +TLALVG SG GKST+ L+ RFYD + G
Sbjct: 52 GRIEFENVHFSYADGRET--LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109
Query: 731 LITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXX 790
I +DG D+ + LR+ IG+V Q+ +LF +I +N+ G+
Sbjct: 110 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
H I P GY TQVG+RG +LSGG+KQR+A+AR ++K P I+LLDE TSALD+ +E +
Sbjct: 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 851 QQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKL- 909
Q ++ K+ RTTIV+AHRL+TV NA+ I+V+ G +VE G H LL RGG Y D+ +L
Sbjct: 230 QASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQ 289
Query: 910 -ASEAVSQ---PQSKQK 922
E S+ PQ+ ++
Sbjct: 290 QGQEETSEDTKPQTMER 306
Score = 173 bits (438), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/277 (37%), Positives = 146/277 (52%), Gaps = 4/277 (1%)
Query: 1273 GLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLGIELKMVTFTYPSRPEVTVL 1332
GL P S + + + K + + ++ G R + IE + V F+Y E L
Sbjct: 13 GLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRET--L 70
Query: 1333 KDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392
+D V G +ALVG SG+GKST++ L+ RFYD + G + I+G D+ ++ LR
Sbjct: 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130
Query: 1393 ALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESGVQ 1452
+V Q+ LF TI DNI G IH I + P+GY TQVGE G++
Sbjct: 131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK 190
Query: 1453 LSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIVVAHRLS 1512
LSGG+KQR+AIAR ILK + + +Q +L KV TTIVVAHRLS
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250
Query: 1513 TIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASL 1549
T+ A+ I V++DG +VE G HE LL+ GVYA +
Sbjct: 251 TVVNADQILVIKDGCIVERGRHEALLSR--GGVYADM 285
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 155/242 (64%), Gaps = 4/242 (1%)
Query: 673 IEFKGVTFAY-PSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I F+ + F Y P P VIL ++NL I + + +VG SG GKST+ LI+RFY P G
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXH 791
+ +DGHDL WLR Q+G+V Q+ +L SI++N+ + H
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
FISEL GY+T VG++G LSGGQ+QRIA+ARA++ +P+IL+ D+ TSALD ESE ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLL-ERGGAYHDLVKLA 910
+ + KI GRT I+IAHRL+TVKNA+ I+V+++G +VE G H++LL E Y L +L
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
Query: 911 SE 912
S+
Sbjct: 246 SD 247
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 134/243 (55%), Gaps = 4/243 (1%)
Query: 1314 IELKMVTFTY-PSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I + + F Y P P +L + L +K G ++ +VG SGSGKST+ LIQRFY P G+
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIH 1432
V+I+G DL + WLR+Q +V Q+ L +I DNI+L NP H
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQ 1492
FIS L +GY T VGE G LSGGQ+QRIAIARA++ ++ +
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 1493 DALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552
+ K+ K T I++AHRLST++ A+ I V+ G +VE G H+ LL S +Y+ L +
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQL 244
Query: 1553 ETE 1555
+++
Sbjct: 245 QSD 247
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 154/242 (63%), Gaps = 4/242 (1%)
Query: 673 IEFKGVTFAY-PSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I F+ + F Y P P VIL ++NL I + + +VG SG GKST+ LI+RFY P G
Sbjct: 2 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXH 791
+ +DGHDL WLR Q+G+V Q+ +L SI++N+ + H
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
FISEL GY+T VG++G LSGGQ+QRIA+ARA++ +P+IL+ DE TSALD ESE ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLL-ERGGAYHDLVKLA 910
+ + KI GRT I+IA RL+TVKNA+ I+V+++G +VE G H++LL E Y L +L
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Query: 911 SE 912
S+
Sbjct: 240 SD 241
Score = 160 bits (404), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 133/243 (54%), Gaps = 4/243 (1%)
Query: 1314 IELKMVTFTY-PSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I + + F Y P P +L + L +K G ++ +VG SGSGKST+ LIQRFY P G+
Sbjct: 2 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIH 1432
V+I+G DL + WLR+Q +V Q+ L +I DNI+L NP H
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQ 1492
FIS L +GY T VGE G LSGGQ+QRIAIARA++ ++ +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1493 DALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552
+ K+ K T I++A RLST++ A+ I V+ G +VE G H+ LL S +Y+ L +
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQL 238
Query: 1553 ETE 1555
+++
Sbjct: 239 QSD 241
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 154/242 (63%), Gaps = 4/242 (1%)
Query: 673 IEFKGVTFAY-PSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I F+ + F Y P P VIL ++NL I + + +VG SG GKST+ LI+RFY P G
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXH 791
+ +DGHDL WLR Q+G+V Q+ +L SI++N+ + H
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQ 851
FISEL GY+T VG++G LSGGQ+QRIA+ARA++ +P+IL+ DE TSALD ESE ++
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLL-ERGGAYHDLVKLA 910
+ + KI GRT I+IA RL+TVKNA+ I+V+++G +VE G H++LL E Y L +L
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
Query: 911 SE 912
S+
Sbjct: 246 SD 247
Score = 160 bits (404), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 133/243 (54%), Gaps = 4/243 (1%)
Query: 1314 IELKMVTFTY-PSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I + + F Y P P +L + L +K G ++ +VG SGSGKST+ LIQRFY P G+
Sbjct: 8 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1373 VMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIH 1432
V+I+G DL + WLR+Q +V Q+ L +I DNI+L NP H
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQ 1492
FIS L +GY T VGE G LSGGQ+QRIAIARA++ ++ +
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1493 DALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552
+ K+ K T I++A RLST++ A+ I V+ G +VE G H+ LL S +Y+ L +
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQL 244
Query: 1553 ETE 1555
+++
Sbjct: 245 QSD 247
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 200 bits (508), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 153/239 (64%), Gaps = 1/239 (0%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
IEF V F+YP + L+S+N IPS T ALVG +G GKST+ L+ RFYD +G I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI 76
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHS 792
+ G ++ +R+ IG+V Q+ ILF +I N+L GK + +
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ 852
FI LP +DT VG++G +LSGG++QRIA+AR ++KDP+I++ DE TS+LDS++E + Q+
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 853 AIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLAS 911
A++ + RT I+IAHRL+T+ +A +I++L++G +VE G H+ LL+ G Y ++ + S
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQS 255
Score = 147 bits (371), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 130/251 (51%), Gaps = 3/251 (1%)
Query: 1307 ERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFY 1366
E+ + IE V F+YP + LK + G+ ALVG +GSGKST+ L+ RFY
Sbjct: 11 EKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70
Query: 1367 DPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXX 1426
D +G + I G ++ + N +R +V Q+ LF TI+ NI G
Sbjct: 71 DA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKAT 129
Query: 1427 XXXYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXX 1486
++ FI +LP+ ++T VG G++LSGG++QRIAIAR +LK ++
Sbjct: 130 KSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSK 189
Query: 1487 XXKHVQDALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVY 1546
Q A+ + K T I++AHRLSTI A I ++ G +VE G+H+ LL LNG Y
Sbjct: 190 TEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL--KLNGEY 247
Query: 1547 ASLVRAETEAN 1557
A + ++ N
Sbjct: 248 AEMWNMQSGGN 258
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 199 bits (507), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 148/244 (60%), Gaps = 3/244 (1%)
Query: 668 SVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP 727
++ G ++F+ V+FAYP+ P +L+ L + K ALVG +G GKSTV AL++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 728 TKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMG-KENXXXXXXXXXXX 786
T G + LDG L +L TQ+ VGQEP+LF S EN+ G
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 787 XXXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
H FIS P GYDT+VG+ G QLSGGQ+Q +ALARA+I+ PR+L+LD+ TSALD+ +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 847 ESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYH 904
+ VQ+ + + RT ++I H+L+ + A+ I+ L +GSV E G H QL+ERGG Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 905 DLVK 908
+V+
Sbjct: 252 SMVE 255
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 132/241 (54%), Gaps = 5/241 (2%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
++ + V+F YP+ P V VL+ + G + ALVG +GSGKSTV L+Q Y P GKV
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXY-IH 1432
+++G L + + +L Q A VGQEP LF + R+NIA G + H
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQ 1492
FIS PQGY+T+VGE+G QLSGGQ+Q +A+ARA+++ R+ VQ
Sbjct: 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQ 196
Query: 1493 DALRKVSKRA--TTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
L + + A T +++ H+LS A+ I +++G+V E G+H L+ G Y S+V
Sbjct: 197 RLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMER--GGCYRSMV 254
Query: 1551 R 1551
Sbjct: 255 E 255
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 196 bits (497), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 146/244 (59%), Gaps = 3/244 (1%)
Query: 668 SVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP 727
++ G ++F+ V+FAYP+ P +L+ L + K ALVG +G GKSTV AL++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 728 TKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMG-KENXXXXXXXXXXX 786
T G + LDG L +L TQ+ VGQEP+LF S EN+ G
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 787 XXXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
H FIS P GYDT+VG+ G QLSGGQ+Q +ALARA+I+ PR+L+LD TSALD+ +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 847 ESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYH 904
+ VQ+ + + RT ++I +L+ + A+ I+ L +GSV E G H QL+ERGG Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 905 DLVK 908
+V+
Sbjct: 252 SMVE 255
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 131/241 (54%), Gaps = 5/241 (2%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
++ + V+F YP+ P V VL+ + G + ALVG +GSGKSTV L+Q Y P GKV
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXY-IH 1432
+++G L + + +L Q A VGQEP LF + R+NIA G + H
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQ 1492
FIS PQGY+T+VGE+G QLSGGQ+Q +A+ARA+++ R+ VQ
Sbjct: 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196
Query: 1493 DALRKVSKRA--TTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
L + + A T +++ +LS A+ I +++G+V E G+H L+ G Y S+V
Sbjct: 197 RLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER--GGCYRSMV 254
Query: 1551 R 1551
Sbjct: 255 E 255
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 154/248 (62%), Gaps = 3/248 (1%)
Query: 669 VSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT 728
+ G ++F+ V+FAYP+RP+ ++L+ L + + ALVG +G GKSTV AL++ Y PT
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 729 KGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMG-KENXXXXXXXXXXXX 787
G + LDG L + ++L Q+ VGQEP +F S+ EN+ G +
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 788 XXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE 847
HSFIS LP GYDT+V + G+QLSGGQ+Q +ALARA+I+ P +L+LD+ TSALD+ S+
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 848 SIVQQAI--DKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHD 905
V+Q + R+ ++I L+ V+ A+ I+ L+ G++ E G H+QL+E+ G Y
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 250
Query: 906 LVKLASEA 913
+V+ ++A
Sbjct: 251 MVQAPADA 258
Score = 157 bits (396), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 139/246 (56%), Gaps = 5/246 (2%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
++ + V+F YP+RP+V VL+ ++ G + ALVG +GSGKSTV L+Q Y P G++
Sbjct: 15 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 74
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALG-NPKXXXXXXXXXXXXXYIH 1432
+++G L + ++L +Q A VGQEP +F ++++NIA G K H
Sbjct: 75 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAH 134
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQ 1492
FIS LPQGY+T+V E+G QLSGGQ+Q +A+ARA+++ V V+
Sbjct: 135 SFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVE 194
Query: 1493 DALRKVSKR--ATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
L + +R + +++ LS + +A+ I + GA+ E G+H+ L+ G Y ++V
Sbjct: 195 QLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK--KGCYWAMV 252
Query: 1551 RAETEA 1556
+A +A
Sbjct: 253 QAPADA 258
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 191 bits (486), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 145/244 (59%), Gaps = 3/244 (1%)
Query: 668 SVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP 727
++ G ++F+ V+FAYP+ P +L+ L + K ALVG +G GKSTV AL++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 728 TKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMG-KENXXXXXXXXXXX 786
T G + LDG L +L TQ+ VGQEP+LF S EN+ G
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 787 XXXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
H FIS P GYDT+VG+ G QL+ GQ+Q +ALARA+I+ PR+L+LD TSALD+ +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 847 ESIVQQAIDKIS--VGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYH 904
+ VQ+ + + RT ++I +L+ + A+ I+ L +GSV E G H QL+ERGG Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 905 DLVK 908
+V+
Sbjct: 252 SMVE 255
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 5/241 (2%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
++ + V+F YP+ P V VL+ + G + ALVG +GSGKSTV L+Q Y P GKV
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXY-IH 1432
+++G L + + +L Q A VGQEP LF + R+NIA G + H
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQ 1492
FIS PQGY+T+VGE+G QL+ GQ+Q +A+ARA+++ R+ VQ
Sbjct: 137 DFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196
Query: 1493 DALRKVSKRA--TTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
L + + A T +++ +LS A+ I +++G+V E G+H L+ G Y S+V
Sbjct: 197 RLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER--GGCYRSMV 254
Query: 1551 R 1551
Sbjct: 255 E 255
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 187 bits (475), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 146/221 (66%), Gaps = 3/221 (1%)
Query: 678 VTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGH 737
V FAY + ILR ++ + +A G SGGGKST+F+L+ERFY PT G IT+DG
Sbjct: 7 VDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 738 DLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKE-NXXXXXXXXXXXXXXXHSFISE 796
+ ++ ++ R+QIG V Q+ + A +I EN+ G E + SF+
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 797 LPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK 856
+P +T+VG+RG ++SGGQ+QR+A+ARA +++P+IL+LDE T++LDSESES+VQ+A+D
Sbjct: 125 MPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184
Query: 857 ISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLL 897
+ GRTT+VIAHRL+T+ +A+ I +++G + G H +L+
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
Score = 146 bits (369), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)
Query: 1317 KMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIE 1376
+ V F Y ++ L+D + + S++A G SG GKST+ L++RFY P G++ I+
Sbjct: 5 RHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 1377 GVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALG-NPKXXXXXXXXXXXXXYIHKFI 1435
G + I+++ R Q V Q+ A+ AGTIR+N+ G + F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 1436 SSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDAL 1495
++P T+VGE GV++SGGQ+QR+AIARA L+ ++ VQ AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 1496 RKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASH 1541
+ K TT+V+AHRLSTI +A+ I + G + G H L+A+H
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 182 bits (463), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 140/534 (26%), Positives = 258/534 (48%), Gaps = 43/534 (8%)
Query: 393 KICLLMTVLAAIVMMGAYLEITCWRLVGERSAQRIRTKYLRAVLRQDIAFFDTEVS---T 449
K +LM ++A ++GA I C + ++Q R + R+ ++F + V+ T
Sbjct: 64 KTGILMLIVA---LIGAVGGIGC-TVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHT 119
Query: 450 SDIMHGISSDIAQIQEVMGEKVAHFAHNIFTFICGYTVGFLRSWKVSLVVLSVTPLMMFC 509
S ++ +++D+ Q+Q ++ + F+ G + + K+S V++ + P ++
Sbjct: 120 SSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVL- 178
Query: 510 GMAYKAVYVGLTSKEEASYRR-------AGSVAEQAISSIRTVFSFVAEDHFAVRYAGL- 561
++V LT K +R+ V + + +R V +F E++ +
Sbjct: 179 ------LFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKAN 232
Query: 562 --LADSIPXXXXXXXXXXXXXXVIYLVTYATWALAFWYGSILVARKELSGGAAIA----- 614
L SI I++V A+ W+G +LV ++ G+ +A
Sbjct: 233 ESLRRSI--ISAFSLIVFALPLFIFIVNMGMIAV-LWFGGVLVRNNQMEIGSIMAYTNYL 289
Query: 615 --CFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIIDRVPEIDPYNSEGRKLSSVSGK 672
F + + G L + + +A RV E+++ P I+ ++ L +V G
Sbjct: 290 MQIMFSLMMIGNILNF-------IVRASASAKRVLEVLNEKPAIEEADN-ALALPNVEGS 341
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
+ F+ V F Y + V L +N + +A++G +G GKST+ LI R DP +G +
Sbjct: 342 VSFENVEFRYFENTDPV-LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHS 792
+D D++++++K LR I V QE +LF+ +I EN+ G+E+ H
Sbjct: 401 EVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHD 460
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQ 852
FI LP GYD++V G SGGQKQR+++ARA++K P++L+LD+ TS++D +E +
Sbjct: 461 FIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520
Query: 853 AIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDL 906
+ + + G TT +I ++ T A+ I+VL +G V G H++LLE Y ++
Sbjct: 521 GLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREI 574
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 140/525 (26%), Positives = 244/525 (46%), Gaps = 27/525 (5%)
Query: 1024 DTASTLRRDVRYLSLALVGL--GFGCIIFMTGQQGFCGWAGTKLTMRVRELLFRSILKQE 1081
D + L+ + L +AL+G G GC +F +A +R LFR +L
Sbjct: 58 DFSLVLKTGILMLIVALIGAVGGIGCTVF-------ASYASQNFGADLRRDLFRKVLSFS 110
Query: 1082 PGWFDFEENSTGVLVSRLSIDSISFRSVLGDRFSVLLMGLSSAAVGLGVSLVLNWRLTLV 1141
+ T L++RL+ D ++++ +++ G+ +++ +N +L+ V
Sbjct: 111 IS--NVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSV 168
Query: 1142 AAALTP-FTLGASYLSLIINVGPKIDNSSYAKASSIASGAVSNIRTVTTFSAQEQIINSF 1200
L P L +L+ N + S + + + + +R V F +E +F
Sbjct: 169 LIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENF 228
Query: 1201 DKALSEPKKKSVKRSQILGLTLGFSQGAMYV-----AYTFTLWFGAYLVKQGHASFGVV- 1254
KA +S++RS I +L +++ LWFG LV+ G +
Sbjct: 229 RKA-----NESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIM 283
Query: 1255 -YKIFLILVLSSFSVGQLAGLAPDTSMAATAIPAVLQITKRKPLIDNVKGRKLERSKPLG 1313
Y +L+ ++ FS+ + + A+ + VL++ KP I+ +
Sbjct: 284 AYTNYLMQIM--FSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGS 341
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+ + V F Y + VL VK GS+VA++G +GSGKST++ LI R DP +G+V
Sbjct: 342 VSFENVEFRYFENTD-PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHK 1433
++ +D+R + +K LR + V QE LF+GTI++N+ G IH
Sbjct: 401 EVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHD 460
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQD 1493
FI SLP+GY+++V G SGGQKQR++IARA++K +V K + D
Sbjct: 461 FIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520
Query: 1494 ALRKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLL 1538
L++ +K TT ++ ++ T A+ I V+ +G V +G+H+ LL
Sbjct: 521 GLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELL 565
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 96.7 bits (239), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 18/239 (7%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
I + TF + +R + L + IP +A+VG G GKS++ + + D +G +
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 733 TLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHS 792
+ G Q W++ S+ EN+L G +
Sbjct: 63 AIKGSVAYVPQQAWIQND-------------SLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSE-SESIVQ 851
+ LP G T++G++G LSGGQKQR++LARA+ + I L D+P SA+D+ + I +
Sbjct: 110 -LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 852 QAIDKISV--GRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVK 908
I + +T I++ H ++ + + I+V+ G + E+G++++LL R GA+ + ++
Sbjct: 169 NVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 20/241 (8%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
I ++ TFT+ +R + L + G++VA+VG G GKS+++ + D +G V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHK 1433
I+G A V Q+ + ++R+NI G +
Sbjct: 63 AIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQD 1493
+ LP G T++GE GV LSGGQKQR+++ARA+ + + KH+ +
Sbjct: 110 -LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 1494 AL---RKVSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
+ + + K T I+V H +S + + ++I V+ G + E GS++ LLA +G +A +
Sbjct: 169 NVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR--DGAFAEFL 226
Query: 1551 R 1551
R
Sbjct: 227 R 227
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 92.4 bits (228), Expect = 2e-18, Method: Composition-based stats.
Identities = 73/236 (30%), Positives = 114/236 (48%), Gaps = 35/236 (14%)
Query: 673 IEFKGVTFAYPSRPETVI-LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I+ K VT Y E + L+++NL I + ++++G SG GKST+ +I PT+G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 732 ITLDG---HDLKSLQV-KWLRTQIGMVGQE----PILFATSILENV----------LMGK 773
+ +D +DL ++ K R +IG V Q+ P+L A LENV M
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTA---LENVELPLIFKYRGAMSG 118
Query: 774 ENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRIL 833
E F + P QLSGGQ+QR+A+ARA+ +P I+
Sbjct: 119 EERRKRALECLKMAELEERFANHKP-----------NQLSGGQQQRVAIARALANNPPII 167
Query: 834 LLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKNANTIVVLDQGSV 887
L D+PT ALDS++ + Q + K++ G+T +V+ H + + I+ L G V
Sbjct: 168 LADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 67.0 bits (162), Expect = 8e-11, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 35/236 (14%)
Query: 1314 IELKMVTFTYPSRPEVT-VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I+LK VT TY E+ LK+ L +K G V+++G SGSGKST++ +I P +G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1373 VMIEGVDLREIN----VKWLRKQTALVGQE----PALFAGTIRDNI----------ALGN 1414
V I+ + +++ K R + V Q+ P L T +N+ A+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAMSG 118
Query: 1415 PKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVX 1474
+ +F + P QLSGGQ+QR+AIARA+ +
Sbjct: 119 EERRKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPII 167
Query: 1475 XXXXXXXXXXXXXXKHVQDALRKVSKR--ATTIVVAHRLSTIREANMIAVVRDGAV 1528
+ + L+K+++ T +VV H ++ R I ++DG V
Sbjct: 168 LADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 17/238 (7%)
Query: 670 SGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTK 729
S IEF GV YP +V R ++ I + + L+G SG GK+T+ LI PTK
Sbjct: 12 SMTIEFVGVEKIYPGGARSV--RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK 69
Query: 730 GLITLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENXXXXXXXXXXXXX 788
G + + G + L + + +G+V Q LF ++ +NV G
Sbjct: 70 GDVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVR 127
Query: 789 XXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS---- 844
F+ ++ +LSGGQ+QR+ALARA+ P++LL DEP +A+D+
Sbjct: 128 ELLRFMR-----LESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRR 182
Query: 845 ESESIVQQAIDKISVGRTTIVIAH-RLATVKNANTIVVLDQGSVVEIGNHRQLLERGG 901
E + V+Q D++ V T++ + H + ++ A+ ++VL +G+V + G ++ E+ G
Sbjct: 183 ELRTFVRQVHDEMGV--TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 106/230 (46%), Gaps = 13/230 (5%)
Query: 1312 LGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
+ IE V YP ++ +++ G MV L+G SGSGK+T++ LI P +G
Sbjct: 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG 70
Query: 1372 KVMIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKXXXXXXXXXXXXXY 1430
V I G + ++ + ++ LV Q ALF T+ DN++ G +
Sbjct: 71 DVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRE 128
Query: 1431 IHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKH 1490
+ +F+ E+ +LSGGQ+QR+A+ARA+ +V +
Sbjct: 129 LLRFMR-----LESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRE 183
Query: 1491 VQDALRKVSKR--ATTIVVAH-RLSTIREANMIAVVRDGAVVEYGSHETL 1537
++ +R+V T++ V H + + A+ + V+ +G V ++G+ E +
Sbjct: 184 LRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 21/229 (9%)
Query: 673 IEFKGVTFAYPSRPETV-ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I+ +T + T+ L +++L +P+ + ++G SG GKST+ + PT+G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 732 ITLDGHDLKSLQVKWL---RTQIGMVGQE-PILFATSILENVLMGKENXXXXXXXXXXXX 787
+ +DG +L +L L R QIGM+ Q +L + ++ NV + E
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 788 XXXHSFISELPLGYDTQVGDR----GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
S + +GD+ + LSGGQKQR+A+ARA+ +P++LL DE TSALD
Sbjct: 122 TELLSLVG---------LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Query: 844 SESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVE 889
+ + + + I+ +G T ++I H + VK + + V+ G ++E
Sbjct: 173 PATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 221
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 22/214 (10%)
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388
+ L + L V G + ++G SG+GKST+I + P +G V+++G +L ++ L
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 77
Query: 1389 ---RKQTALVGQEPALFAG-TIRDNIAL-----GNPKXXXXXXXXXXXXXYIHKFISSLP 1439
R+Q ++ Q L + T+ N+AL PK + + +S +
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK--------DEVKRRVTELLSLVG 129
Query: 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVS 1499
G + S LSGGQKQR+AIARA+ +V + + + L+ ++
Sbjct: 130 LGDKHDSYPSN--LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 1500 KR--ATTIVVAHRLSTI-REANMIAVVRDGAVVE 1530
+R T +++ H + + R + +AV+ +G ++E
Sbjct: 188 RRLGLTILLITHEMDVVKRICDCVAVISNGELIE 221
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 13/235 (5%)
Query: 671 GKIEFKGVT--FAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT 728
G+IE V+ F + E L +++LVI + L + G +G GKST+ ++ +PT
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 729 KGLITLDGHDLKSLQVKWLRTQIGMVGQEP--ILFATSILENVLMGKENXXXXXXXXXXX 786
G + DG K ++ R IG+ Q P FA + + V +N
Sbjct: 63 SGDVLYDGERKKGYEI---RRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLV 119
Query: 787 XXXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
F+ L +D+ LSGG+K+R+A+A ++ +P IL+LDEP LD E
Sbjct: 120 KKAME-FVG---LDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 175
Query: 847 ESIVQQAIDK-ISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
++ + + ++K ++G+T I+I+H + TV N + +VVL++G V G + LE+
Sbjct: 176 KTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 87/221 (39%), Gaps = 17/221 (7%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
E L++ L + G + + G +GSGKST++ ++ +P G V+ +G + +
Sbjct: 21 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEI-- 78
Query: 1388 LRKQTALVGQEPA--LFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQ 1445
R+ + Q P FA + D +A + K + + +++
Sbjct: 79 -RRNIGIAFQYPEDQFFAERVFDEVAFA----VKNFYPDRDPVPLVKKAMEFVGLDFDSF 133
Query: 1446 VGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSK----R 1501
LSGG+K+R+AIA I+ + D LR V K
Sbjct: 134 KDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK---TDLLRIVEKWKTLG 190
Query: 1502 ATTIVVAHRLST-IREANMIAVVRDGAVVEYGSHETLLASH 1541
T I+++H + T I + + V+ G V G+ L +
Sbjct: 191 KTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 231
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 91.3 bits (225), Expect = 4e-18, Method: Composition-based stats.
Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 11/205 (5%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
L ++NL I + +AL+G SG GKST+ I Y PT G I D D+ L K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 751 IGMVGQEPILFA-TSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGDRG 809
+G+V Q L+ ++ +N+ E L D +
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKM-----LHIDKLLNRYP 131
Query: 810 TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIA 867
QLSGGQ+QR+A+ARA++K+P +LLLDEP S LD+ V+ + ++ +G TT+ +
Sbjct: 132 WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVT 191
Query: 868 HRLA-TVKNANTIVVLDQGSVVEIG 891
H A + A+ I V+ +G ++++G
Sbjct: 192 HDQAEALAMADRIAVIREGEILQVG 216
Score = 83.2 bits (204), Expect = 1e-15, Method: Composition-based stats.
Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 23/214 (10%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLR 1389
T L + LK+K G +AL+G SGSGKST+++ I Y P GK+ + D+ E+ K
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--D 74
Query: 1390 KQTALVGQEPALFAG-TIRDNIAL------GNPKXXXXXXXXXXXXXYIHKFISSLPQGY 1442
+ LV Q AL+ T+ NIA + +I K ++ P
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW-- 132
Query: 1443 ETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKR- 1501
QLSGGQ+QR+AIARA++K V V+ L+++ K
Sbjct: 133 ---------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL 183
Query: 1502 -ATTIVVAH-RLSTIREANMIAVVRDGAVVEYGS 1533
TT+ V H + + A+ IAV+R+G +++ G+
Sbjct: 184 GITTVYVTHDQAEALAMADRIAVIREGEILQVGT 217
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 91.3 bits (225), Expect = 4e-18, Method: Composition-based stats.
Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 29/233 (12%)
Query: 673 IEFKGVTFAYPSRPETVI-LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I+ K VT Y E + L+++NL I + +++ G SG GKST +I PT+G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 732 ITLDG---HDLKSLQV-KWLRTQIGMVGQE----PILFATSILENVLMGK-------ENX 776
+ +D +DL ++ K R +IG V Q+ P+L A +E L+ K E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 777 XXXXXXXXXXXXXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLD 836
F + P QLSGGQ+QR+A+ARA+ +P I+L D
Sbjct: 122 RKRALECLKXAELEERFANHKP-----------NQLSGGQQQRVAIARALANNPPIILAD 170
Query: 837 EPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKNANTIVVLDQGSV 887
EPT ALDS++ + Q + K++ G+T +V+ H + + I+ L G V
Sbjct: 171 EPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 64.3 bits (155), Expect = 5e-10, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 35/236 (14%)
Query: 1314 IELKMVTFTYPSRPEVT-VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I+LK VT TY E+ LK+ L +K G V++ G SGSGKST + +I P +G+
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 1373 VMIEGVDLREIN----VKWLRKQTALVGQE----PALFAGTIRDNIAL----------GN 1414
V I+ + +++ K R + V Q+ P L T +N+ L
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAXSG 118
Query: 1415 PKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVX 1474
+ +F + P QLSGGQ+QR+AIARA+ +
Sbjct: 119 EERRKRALECLKXAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPII 167
Query: 1475 XXXXXXXXXXXXXXKHVQDALRKVSKR--ATTIVVAHRLSTIREANMIAVVRDGAV 1528
+ + L+K+++ T +VV H ++ R I ++DG V
Sbjct: 168 LADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 21/229 (9%)
Query: 673 IEFKGVTFAYPSRPETV-ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I+ +T + T+ L +++L +P+ + ++G SG GKST+ + PT+G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 732 ITLDGHDLKSLQVKWL---RTQIGMVGQE-PILFATSILENVLMGKENXXXXXXXXXXXX 787
+ +DG +L +L L R QIGM+ Q +L + ++ NV + E
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 788 XXXHSFISELPLGYDTQVGDR----GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
S + +GD+ + LSGGQKQR+A+ARA+ +P++LL D+ TSALD
Sbjct: 145 TELLSLVG---------LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
Query: 844 SESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVE 889
+ + + + I+ +G T ++I H + VK + + V+ G ++E
Sbjct: 196 PATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 244
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 22/214 (10%)
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388
+ L + L V G + ++G SG+GKST+I + P +G V+++G +L ++ L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 1389 ---RKQTALVGQEPALFAG-TIRDNIAL-----GNPKXXXXXXXXXXXXXYIHKFISSLP 1439
R+Q ++ Q L + T+ N+AL PK + + +S +
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK--------DEVKRRVTELLSLVG 152
Query: 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVS 1499
G + S LSGGQKQR+AIARA+ +V + + + L+ ++
Sbjct: 153 LGDKHDSYPSN--LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 1500 KR--ATTIVVAHRLSTI-REANMIAVVRDGAVVE 1530
+R T +++ H + + R + +AV+ +G ++E
Sbjct: 211 RRLGLTILLITHEMDVVKRICDCVAVISNGELIE 244
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 110/213 (51%), Gaps = 11/213 (5%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
L +++LVI + L + G +G GKST+ ++ +PT G + DG K ++ R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEI---RRN 79
Query: 751 IGMVGQEP--ILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGDR 808
IG+ Q P FA + + V +N F+ L +D+
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAME-FVG---LDFDSFKDRV 135
Query: 809 GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK-ISVGRTTIVIA 867
LSGG+K+R+A+A ++ +P IL+LDEP LD E ++ + + ++K ++G+T I+I+
Sbjct: 136 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195
Query: 868 HRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
H + TV N + +VVL++G V G + LE+
Sbjct: 196 HDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 87/221 (39%), Gaps = 17/221 (7%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
E L++ L + G + + G +GSGKST++ ++ +P G V+ +G + +
Sbjct: 19 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEI-- 76
Query: 1388 LRKQTALVGQEPA--LFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQ 1445
R+ + Q P FA + D +A + K + + +++
Sbjct: 77 -RRNIGIAFQYPEDQFFAERVFDEVAFA----VKNFYPDRDPVPLVKKAMEFVGLDFDSF 131
Query: 1446 VGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSK----R 1501
LSGG+K+R+AIA I+ + D LR V K
Sbjct: 132 KDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK---TDLLRIVEKWKTLG 188
Query: 1502 ATTIVVAHRLST-IREANMIAVVRDGAVVEYGSHETLLASH 1541
T I+++H + T I + + V+ G V G+ L +
Sbjct: 189 KTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 90.9 bits (224), Expect = 6e-18, Method: Composition-based stats.
Identities = 72/236 (30%), Positives = 114/236 (48%), Gaps = 35/236 (14%)
Query: 673 IEFKGVTFAYPSRPETVI-LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
++ K VT Y E + L+++NL I + ++++G SG GKST+ +I PT+G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 732 ITLDG---HDLKSLQV-KWLRTQIGMVGQE----PILFATSILENV----------LMGK 773
+ +D +DL ++ K R +IG V Q+ P+L A LENV M
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTA---LENVELPLIFKYRGAMSG 118
Query: 774 ENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRIL 833
E F + P QLSGGQ+QR+A+ARA+ +P I+
Sbjct: 119 EERRKRALECLKMAELEERFANHKP-----------NQLSGGQQQRVAIARALANNPPII 167
Query: 834 LLDEPTSALDSESESIVQQAIDKISV--GRTTIVIAHRLATVKNANTIVVLDQGSV 887
L D+PT ALDS++ + Q + K++ G+T +V+ H + + I+ L G V
Sbjct: 168 LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 65.9 bits (159), Expect = 2e-10, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 35/236 (14%)
Query: 1314 IELKMVTFTYPSRPEVT-VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
++LK VT TY E+ LK+ L +K G V+++G SGSGKST++ +I P +G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1373 VMIEGVDLREIN----VKWLRKQTALVGQE----PALFAGTIRDNI----------ALGN 1414
V I+ + +++ K R + V Q+ P L T +N+ A+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAMSG 118
Query: 1415 PKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVX 1474
+ +F + P QLSGGQ+QR+AIARA+ +
Sbjct: 119 EERRKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPII 167
Query: 1475 XXXXXXXXXXXXXXKHVQDALRKVSKR--ATTIVVAHRLSTIREANMIAVVRDGAV 1528
+ + L+K+++ T +VV H ++ R I ++DG V
Sbjct: 168 LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 13/217 (5%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKS--LQVKWL 747
+L+ +N+ I + + ++G SG GKST + D +G I +DG +LK+ + +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 748 RTQIGMVGQEPILFA-TSILENVLMGKENXXXXXXXXXXXXXXXHSFISEL--PLGYDTQ 804
R ++GMV Q LF ++L N+ + + EL +G +
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAP------MKVRKWPREKAEAKAMELLDKVGLKDK 152
Query: 805 VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTT 863
LSGGQ QR+A+ARA+ +P+I+L DEPTSALD E V + +++ G T
Sbjct: 153 AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTM 212
Query: 864 IVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
+V+ H + + + ++ +D G ++E G L +R
Sbjct: 213 VVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 11/216 (5%)
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDL--REINVK 1386
+ VLK + ++ G +V ++G SGSGKST + + D ++G+++I+G++L ++ N+
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 1387 WLRKQTALVGQEPALFAG-TIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQ-GYET 1444
+R++ +V Q LF T+ +NI L K K + L + G +
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEA-----KAMELLDKVGLKD 151
Query: 1445 QVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRA-T 1503
+ LSGGQ QR+AIARA+ ++ V +++++ T
Sbjct: 152 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMT 211
Query: 1504 TIVVAHRLSTIREANMIAVVRDGA-VVEYGSHETLL 1538
+VV H + RE + DG ++E G E L
Sbjct: 212 MVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 13/217 (5%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKS--LQVKWL 747
+L+ +N+ I + + ++G SG GKST + D +G I +DG +LK+ + +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 748 RTQIGMVGQEPILFA-TSILENVLMGKENXXXXXXXXXXXXXXXHSFISEL--PLGYDTQ 804
R ++GMV Q LF ++L N+ + + EL +G +
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAP------MKVRKWPREKAEAKAMELLDKVGLKDK 131
Query: 805 VGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTT 863
LSGGQ QR+A+ARA+ +P+I+L DEPTSALD E V + +++ G T
Sbjct: 132 AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTM 191
Query: 864 IVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
+V+ H + + + ++ +D G ++E G L +R
Sbjct: 192 VVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 11/216 (5%)
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDL--REINVK 1386
+ VLK + ++ G +V ++G SGSGKST + + D ++G+++I+G++L ++ N+
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 1387 WLRKQTALVGQEPALFAG-TIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQ-GYET 1444
+R++ +V Q LF T+ +NI L K K + L + G +
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEA-----KAMELLDKVGLKD 130
Query: 1445 QVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRA-T 1503
+ LSGGQ QR+AIARA+ ++ V +++++ T
Sbjct: 131 KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMT 190
Query: 1504 TIVVAHRLSTIREANMIAVVRDGA-VVEYGSHETLL 1538
+VV H + RE + DG ++E G E L
Sbjct: 191 MVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 226
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 704 LALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFA- 762
+AL+G SG GK+T ++ Y PT G I D + + K+ ++GMV Q L+
Sbjct: 32 VALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REVGMVFQNYALYPH 89
Query: 763 TSILENVLMGKENXXXXXXXXXXXXXXXHSFISEL--PLGYDTQVGDRGTQLSGGQKQRI 820
++ EN+ + E+ L D + + TQLSGGQ+QR+
Sbjct: 90 MTVFENIAF-------PLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRV 142
Query: 821 ALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAHRLA-TVKNAN 877
ALARA++K P++LL DEP S LD+ I++ I + +G T++ + H A + A+
Sbjct: 143 ALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMAS 202
Query: 878 TIVVLDQGSVVEIG 891
I V +QG +V+ G
Sbjct: 203 RIAVFNQGKLVQYG 216
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 1337 LKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVG 1396
+VK G VAL+G SG GK+T + ++ Y P G++ + V + +I K+ ++ +V
Sbjct: 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REVGMVF 81
Query: 1397 QEPALFAG-TIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGY--ETQVGESGVQL 1453
Q AL+ T+ +NIA + K + + + + + QL
Sbjct: 82 QNYALYPHMTVFENIAF-------PLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQL 134
Query: 1454 SGGQKQRIAIARAILKGSRV-------XXXXXXXXXXXXXXXKHVQDALRKVSKRATTIV 1506
SGGQ+QR+A+ARA++K +V KH+Q L T++
Sbjct: 135 SGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL-----GITSVY 189
Query: 1507 VAH-RLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
V H + + A+ IAV G +V+YG+ + + S N AS +
Sbjct: 190 VTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFI 234
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 87.0 bits (214), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 21/229 (9%)
Query: 673 IEFKGVTFAYPSRPETV-ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
I+ +T + T+ L +++L +P+ + ++G SG GKST+ + PT+G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 732 ITLDGHDLKSLQVKWL---RTQIGMVGQE-PILFATSILENVLMGKENXXXXXXXXXXXX 787
+ +DG +L +L L R QIG + Q +L + ++ NV + E
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 788 XXXHSFISELPLGYDTQVGDR----GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
S + +GD+ + LSGGQKQR+A+ARA+ +P++LL D+ TSALD
Sbjct: 145 TELLSLVG---------LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
Query: 844 SESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVVLDQGSVVE 889
+ + + + I+ +G T ++I H VK + + V+ G ++E
Sbjct: 196 PATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIE 244
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 22/214 (10%)
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388
+ L + L V G + ++G SG+GKST+I + P +G V+++G +L ++ L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 1389 ---RKQTALVGQEPALFAG-TIRDNIAL-----GNPKXXXXXXXXXXXXXYIHKFISSLP 1439
R+Q + Q L + T+ N+AL PK + + +S +
Sbjct: 101 TKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPK--------DEVKRRVTELLSLVG 152
Query: 1440 QGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVS 1499
G + S LSGGQKQR+AIARA+ +V + + + L+ ++
Sbjct: 153 LGDKHDSYPSN--LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 1500 KR--ATTIVVAHRLSTI-REANMIAVVRDGAVVE 1530
+R T +++ H + R + +AV+ +G ++E
Sbjct: 211 RRLGLTILLITHEXDVVKRICDCVAVISNGELIE 244
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 15/220 (6%)
Query: 678 VTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGH 737
V+F++ +L+++NL I + LA+ G++G GK+++ LI + ++G+I G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR 100
Query: 738 DLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISEL 797
Q W+ M G +I EN++ G I++
Sbjct: 101 VSFCSQFSWI-----MPG--------TIKENIIFGVSYDEYRYKSVVKACQLQQD-ITKF 146
Query: 798 PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS-ESESIVQQAIDK 856
+T +G+ G LSGGQ+ RI+LARA+ KD + LLD P LD E + + + K
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 857 ISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
+ +T I++ ++ ++ A+ I++L QGS G +L
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 15/220 (6%)
Query: 1319 VTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV 1378
V+F++ VLK+ L ++ G M+A+ G +GSGK++++ LI + ++G + G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 1379 DLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSL 1438
+ + Q + GTI++NI G + + I+
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKF 146
Query: 1439 PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV-QDALRK 1497
+ T +GE GV LSGGQ+ RI++ARA+ K + + + V + + K
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 1498 VSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETL 1537
+ T I+V ++ +R+A+ I ++ G+ YG+ L
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 83.2 bits (204), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 15/220 (6%)
Query: 678 VTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGH 737
V+F++ +L+++NL I + LA+ G++G GK+++ LI + ++G+I G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR 100
Query: 738 DLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISEL 797
Q W+ M G +I EN++ G I++
Sbjct: 101 VSFCSQFSWI-----MPG--------TIKENIIFGVSYDEYRYKSVVKACQLQQD-ITKF 146
Query: 798 PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS-ESESIVQQAIDK 856
+T +G+ G LSGGQ+ RI+LARA+ KD + LLD P LD E + + + K
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 857 ISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
+ +T I++ ++ ++ A+ I++L QGS G +L
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 15/220 (6%)
Query: 1319 VTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV 1378
V+F++ VLK+ L ++ G M+A+ G +GSGK++++ LI + ++G + G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 1379 DLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSL 1438
+ + Q + GTI++NI G + + I+
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKF 146
Query: 1439 PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV-QDALRK 1497
+ T +GE GV LSGGQ+ RI++ARA+ K + + + V + + K
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 1498 VSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETL 1537
+ T I+V ++ +R+A+ I ++ G+ YG+ L
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 15/220 (6%)
Query: 678 VTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGH 737
V+F++ +L+++NL I + LA+ G++G GK+++ LI + ++G+I G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR 100
Query: 738 DLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISEL 797
Q W+ M G +I EN++ G I++
Sbjct: 101 VSFCSQFSWI-----MPG--------TIKENIIRGVSYDEYRYKSVVKACQLQQD-ITKF 146
Query: 798 PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS-ESESIVQQAIDK 856
+T +G+ G LSGGQ+ RI+LARA+ KD + LLD P LD E + + + K
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 857 ISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
+ +T I++ ++ ++ A+ I++L QGS G +L
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 15/220 (6%)
Query: 1319 VTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV 1378
V+F++ VLK+ L ++ G M+A+ G +GSGK++++ LI + ++G + G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 1379 DLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSL 1438
+ + Q + GTI++NI G + + I+
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIIRG-VSYDEYRYKSVVKACQLQQDITKF 146
Query: 1439 PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV-QDALRK 1497
+ T +GE GV LSGGQ+ RI++ARA+ K + + + V + + K
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 1498 VSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETL 1537
+ T I+V ++ +R+A+ I ++ G+ YG+ L
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 15/220 (6%)
Query: 678 VTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGH 737
V+F++ +L+++NL I + LA+ G++G GK+++ LI + ++G+I G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR 100
Query: 738 DLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISEL 797
Q W+ M G +I EN++ G I++
Sbjct: 101 VSFCSQFSWI-----MPG--------TIKENIISGVSYDEYRYKSVVKACQLQQD-ITKF 146
Query: 798 PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS-ESESIVQQAIDK 856
+T +G+ G LSGGQ+ RI+LARA+ KD + LLD P LD E + + + K
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 857 ISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
+ +T I++ ++ ++ A+ I++L QGS G +L
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 15/220 (6%)
Query: 1319 VTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV 1378
V+F++ VLK+ L ++ G M+A+ G +GSGK++++ LI + ++G + G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 1379 DLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSL 1438
+ + Q + GTI++NI G + + I+
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIISG-VSYDEYRYKSVVKACQLQQDITKF 146
Query: 1439 PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV-QDALRK 1497
+ T +GE GV LSGGQ+ RI++ARA+ K + + + V + + K
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 1498 VSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETL 1537
+ T I+V ++ +R+A+ I ++ G+ YG+ L
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 20/238 (8%)
Query: 660 NSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFA 719
N+ RK S+ + F F+ P +L+ +N I + LA+ G++G GK+++
Sbjct: 28 NNNNRKTSNGDDSLSFS--NFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLM 82
Query: 720 LIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXX 779
+I +P++G I G Q W+ M G +I EN++ G
Sbjct: 83 MIMGELEPSEGKIKHSGRISFCSQFSWI-----MPG--------TIKENIIAGVSYDEYR 129
Query: 780 XXXXXXXXXXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPT 839
IS+ + +G+ G LSGGQ+ RI+LARA+ KD + LLD P
Sbjct: 130 YRSVIKACQLEED-ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 188
Query: 840 SALDSESE-SIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
LD +E I + + K+ +T I++ ++ +K A+ I++L +GS G +L
Sbjct: 189 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 98/208 (47%), Gaps = 15/208 (7%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
VLKD K++ G ++A+ G +G+GK++++ +I +P++GK+ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1391 QTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESG 1450
+ + Q + GTI++NI G + + IS + +GE G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 1451 VQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV-QDALRKVSKRATTIVVAH 1509
+ LSGGQ+ RI++ARA+ K + + K + + + K+ T I+V
Sbjct: 159 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 1510 RLSTIREANMIAVVRDGAVVEYGSHETL 1537
++ +++A+ I ++ +G+ YG+ L
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 15/210 (7%)
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
T +L+ +N I + LA+ G++G GK+++ +I +P++G I G Q W+
Sbjct: 33 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 92
Query: 748 RTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGD 807
M G +I EN++ G IS+ + +G+
Sbjct: 93 -----MPG--------TIKENIIFGVSYDEYRYRSVIKACQLEED-ISKFAEKDNIVLGE 138
Query: 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE-SIVQQAIDKISVGRTTIVI 866
G LSGGQ+ RI+LARA+ KD + LLD P LD +E I + + K+ +T I++
Sbjct: 139 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 198
Query: 867 AHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
++ +K A+ I++L +GS G +L
Sbjct: 199 TSKMEHLKKADKILILHEGSSYFYGTFSEL 228
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 98/208 (47%), Gaps = 15/208 (7%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
VLKD K++ G ++A+ G +G+GK++++ +I +P++GK+ G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 1391 QTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESG 1450
+ + Q + GTI++NI G + + IS + +GE G
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 1451 VQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV-QDALRKVSKRATTIVVAH 1509
+ LSGGQ+ RI++ARA+ K + + K + + + K+ T I+V
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
Query: 1510 RLSTIREANMIAVVRDGAVVEYGSHETL 1537
++ +++A+ I ++ +G+ YG+ L
Sbjct: 201 KMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 15/210 (7%)
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
T +L+ +N I + LA+ G++G GK+++ +I +P++G I G Q W+
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 80
Query: 748 RTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGD 807
M G +I EN++ G IS+ + +G+
Sbjct: 81 -----MPG--------TIKENIIFGVSYDEYRYRSVIKACQLEED-ISKFAEKDNIVLGE 126
Query: 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE-SIVQQAIDKISVGRTTIVI 866
G LSGGQ+ RI+LARA+ KD + LLD P LD +E I + + K+ +T I++
Sbjct: 127 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 186
Query: 867 AHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
++ +K A+ I++L +GS G +L
Sbjct: 187 TSKMEHLKKADKILILHEGSSYFYGTFSEL 216
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 98/208 (47%), Gaps = 15/208 (7%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
VLKD K++ G ++A+ G +G+GK++++ +I +P++GK+ G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 1391 QTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESG 1450
+ + Q + GTI++NI G + + IS + +GE G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 1451 VQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV-QDALRKVSKRATTIVVAH 1509
+ LSGGQ+ RI++ARA+ K + + K + + + K+ T I+V
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 1510 RLSTIREANMIAVVRDGAVVEYGSHETL 1537
++ +++A+ I ++ +G+ YG+ L
Sbjct: 189 KMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 13/196 (6%)
Query: 706 LVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFA-TS 764
L+G +G GKS LI P +G + L+G D+ L + R IG V Q+ LF S
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 765 ILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALAR 824
+ N+ G N I+ L + + +LSGG++QR+ALAR
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHL-------LDRKPARLSGGERQRVALAR 139
Query: 825 AMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VGRTTIVIAHRLATVKN-ANTIVV 881
A++ PR+LLLDEP SA+D +++ ++ + + + + + H L A+ + V
Sbjct: 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV 199
Query: 882 LDQGSVVEIGNHRQLL 897
+ G +VE G ++L
Sbjct: 200 MLNGRIVEKGKLKELF 215
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 25/225 (11%)
Query: 1333 KDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQT 1392
+D+C+ L+G +G+GKS + LI P++G+V + G D+ + + R+
Sbjct: 24 RDYCV---------LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGI 72
Query: 1393 ALVGQEPALFAG-TIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESGV 1451
V Q+ ALF ++ NIA G I+ L +
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHL-------LDRKPA 125
Query: 1452 QLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIVVAHRL 1511
+LSGG++QR+A+ARA++ R+ + + LR V +R + + H
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV-QREFDVPILHVT 184
Query: 1512 STIREANM----IAVVRDGAVVEYGSHETLLASHLNGVYASLVRA 1552
+ EA M +AV+ +G +VE G + L ++ NG A + A
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK-NGEVAEFLSA 228
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 16/220 (7%)
Query: 678 VTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGH 737
V+F++ +L+++NL I + LA+ G++G GK+++ LI + ++G+I G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR 100
Query: 738 DLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISEL 797
Q W+ M G +I EN++ + I++
Sbjct: 101 VSFCSQFSWI-----MPG--------TIKENIIGVSYDEYRYKSVVKACQLQQD--ITKF 145
Query: 798 PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDS-ESESIVQQAIDK 856
+T +G+ G LSGGQ+ RI+LARA+ KD + LLD P LD E + + + K
Sbjct: 146 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 205
Query: 857 ISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
+ +T I++ ++ ++ A+ I++L QGS G +L
Sbjct: 206 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 245
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 16/220 (7%)
Query: 1319 VTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGV 1378
V+F++ VLK+ L ++ G M+A+ G +GSGK++++ LI + ++G + G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 1379 DLREINVKWLRKQTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSL 1438
+ + Q + GTI++NI + + I+
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENII--GVSYDEYRYKSVVKACQLQQDITKF 145
Query: 1439 PQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV-QDALRK 1497
+ T +GE GV LSGGQ+ RI++ARA+ K + + + V + + K
Sbjct: 146 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 205
Query: 1498 VSKRATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETL 1537
+ T I+V ++ +R+A+ I ++ G+ YG+ L
Sbjct: 206 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 245
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 21/238 (8%)
Query: 660 NSEGRKLSSVSGKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFA 719
N+ RK S+ + F F+ P +L+ +N I + LA+ G++G GK+++
Sbjct: 28 NNNNRKTSNGDDSLSFS--NFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLM 82
Query: 720 LIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXX 779
+I +P++G I G +I Q + +I EN++ +
Sbjct: 83 MIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENIIGVSYDEYRY 129
Query: 780 XXXXXXXXXXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPT 839
IS+ + +G+ G LSGGQ+ RI+LARA+ KD + LLD P
Sbjct: 130 RSVIKACQLEED--ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187
Query: 840 SALDSESE-SIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
LD +E I + + K+ +T I++ ++ +K A+ I++L +GS G +L
Sbjct: 188 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 97/208 (46%), Gaps = 16/208 (7%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
VLKD K++ G ++A+ G +G+GK++++ +I +P++GK+ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1391 QTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESG 1450
+ + Q + GTI++NI + + IS + +GE G
Sbjct: 100 RISFCSQNSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 1451 VQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV-QDALRKVSKRATTIVVAH 1509
+ LSGGQ+ RI++ARA+ K + + K + + + K+ T I+V
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 1510 RLSTIREANMIAVVRDGAVVEYGSHETL 1537
++ +++A+ I ++ +G+ YG+ L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 79.0 bits (193), Expect = 2e-14, Method: Composition-based stats.
Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 21/210 (10%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL-- 747
IL+ ++L + + ++++G SG GKST+ ++ PT+G + L+G ++ K L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 748 --RTQIGMVGQEPILFAT-SILENVL-----MGKENXXXXXXXXXXXXXXXHSFISELPL 799
++G V Q L + LENV+ MGK +SEL L
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERG--------EYLLSELGL 130
Query: 800 GYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV 859
G ++ + +LSGG++QR+A+ARA+ +P +L DEPT LDS + V KI+
Sbjct: 131 G--DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 860 GRTTIV-IAHRLATVKNANTIVVLDQGSVV 888
G T+IV + H + + + + G VV
Sbjct: 189 GGTSIVMVTHERELAELTHRTLEMKDGKVV 218
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 21/210 (10%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL-- 1388
+LK L VK G V+++G SGSGKST+++++ P +GKV +EG ++ N K L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 1389 --RKQTALVGQ------EPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQ 1440
++ V Q E I + +G PK +S L
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERG--------EYLLSEL-- 128
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSK 1500
G ++ +LSGG++QR+AIARA+ + K V D K+++
Sbjct: 129 GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 1501 RATTIV-VAHRLSTIREANMIAVVRDGAVV 1529
T+IV V H + ++DG VV
Sbjct: 189 GGTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 14/218 (6%)
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGH--DLKSLQVK 745
T L+ +N+ I + A++G +G GKST+F P+ G I D D +
Sbjct: 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIM 80
Query: 746 WLRTQIGMVGQEP--ILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDT 803
LR IG+V Q+P LF+ S+ ++V G N + L
Sbjct: 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD------NALKRTGIE 134
Query: 804 QVGDRGTQ-LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS--VG 860
+ D+ T LS GQK+R+A+A ++ +P++L+LDEPT+ LD S + + + ++ +G
Sbjct: 135 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 861 RTTIVIAHRLATVK-NANTIVVLDQGSVVEIGNHRQLL 897
T I+ H + V + + V+ +G V+ GN +++
Sbjct: 195 ITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 16/233 (6%)
Query: 1316 LKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMI 1375
LK+ Y LK + +K G + A++GG+G GKST+ P+ G+++
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 1376 EG--VDLREINVKWLRKQTALVGQEP--ALFAGTIRDNIALGNPKXXXXXXXXXXXXXYI 1431
+ +D + LR+ +V Q+P LF+ ++ +++ G I
Sbjct: 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG-------AVNMKLPEDEI 120
Query: 1432 HKFISSLPQ--GYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXK 1489
K + + + G E + LS GQK+R+AIA ++ +V
Sbjct: 121 RKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS 180
Query: 1490 HVQDALRKVSKR--ATTIVVAHRLSTIR-EANMIAVVRDGAVVEYGSHETLLA 1539
+ L ++ K T I+ H + + + + V+++G V+ G+ + + A
Sbjct: 181 EIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 16/210 (7%)
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
T +L+ +N I + LA+ G++G GK+++ +I +P++G I G
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99
Query: 748 RTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGD 807
+I Q + +I EN++ + IS+ + +G+
Sbjct: 100 --RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED--ISKFAEKDNIVLGE 155
Query: 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE-SIVQQAIDKISVGRTTIVI 866
G LSGGQ+ RI+LARA+ KD + LLD P LD +E I + + K+ +T I++
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 215
Query: 867 AHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
++ +K A+ I++L +GS G +L
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSEL 245
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 97/208 (46%), Gaps = 16/208 (7%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
VLKD K++ G ++A+ G +G+GK++++ +I +P++GK+ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1391 QTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESG 1450
+ + Q + GTI++NI + + IS + +GE G
Sbjct: 100 RISFCSQNSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 1451 VQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV-QDALRKVSKRATTIVVAH 1509
+ LSGGQ+ RI++ARA+ K + + K + + + K+ T I+V
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 1510 RLSTIREANMIAVVRDGAVVEYGSHETL 1537
++ +++A+ I ++ +G+ YG+ L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 3/217 (1%)
Query: 671 GKIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKG 730
G++ K +T Y + IL +++ I + + L+G +G GKST+ + R + T+G
Sbjct: 18 GQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 75
Query: 731 LITLDGHDLKSLQVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXX 790
I +DG S+ ++ R G++ Q+ +F+ + +N L
Sbjct: 76 EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN-LDPNAAHSDQEIWKVADEVGL 134
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
S I + P D + D G LS G KQ + LAR+++ +ILLLDEP++ LD + I+
Sbjct: 135 RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 851 QQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSV 887
++ + + T I+ R+ + + +V+++ V
Sbjct: 195 RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKV 231
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 90/203 (44%), Gaps = 2/203 (0%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
+L++ + G V L+G +GSGKST++ R + +G++ I+GV I ++ RK
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 1391 QTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESG 1450
++ Q+ +F+GT R N+ N + I P + + + G
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153
Query: 1451 VQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIVVAHR 1510
LS G KQ + +AR++L +++ + ++ L++ T I+ R
Sbjct: 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR 213
Query: 1511 LSTIREANMIAVVRDGAVVEYGS 1533
+ + E + V+ + V +Y S
Sbjct: 214 IEAMLECDQFLVIEENKVRQYDS 236
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 26/226 (11%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKS---LQ 743
+ V L ++N+ I + + ++G SG GK+T +I P+ G + D + S L
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 744 VKWLRTQIGMVGQEPILFATSI--------LENVLMGKENXXXXXXXXXXXXXXXHSFIS 795
V +IGMV Q L+ L N+ M KE H ++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI-HHVLN 135
Query: 796 ELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAID 855
P +LSGGQ+QR+ALARA++KDP +LLLDEP S LD+ + +
Sbjct: 136 HFP-----------RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK 184
Query: 856 KIS--VGRTTIVIAHRLATV-KNANTIVVLDQGSVVEIGNHRQLLE 898
++ +G T +V++H A + A+ + VL +G +V++G L +
Sbjct: 185 EVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 105/237 (44%), Gaps = 26/237 (10%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
+V L + + ++ G ++G SG+GK+T + +I P+ G++ + L N K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD-RLVASNGKL 75
Query: 1388 L----RKQTALVGQEPALFAG-TIRDNIA--LGNPKXXXXXXXXXXXXXY----IHKFIS 1436
+ ++ +V Q AL+ T +NIA L N K IH ++
Sbjct: 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN 135
Query: 1437 SLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALR 1496
P+ +LSGGQ+QR+A+ARA++K + + ++
Sbjct: 136 HFPR-----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK 184
Query: 1497 KVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
+V R T +VV+H + I A+ + V+ G +V+ G E L + ++ ASL+
Sbjct: 185 EVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLI 241
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 16/210 (7%)
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
T +L+ +N I + LA+ G++G GK+++ +I +P++G I G Q W+
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 80
Query: 748 RTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGD 807
M G +I EN++ + IS+ + +G+
Sbjct: 81 -----MPG--------TIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 125
Query: 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE-SIVQQAIDKISVGRTTIVI 866
G LSGGQ+ RI+LARA+ KD + LLD P LD +E I + + K+ +T I++
Sbjct: 126 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 185
Query: 867 AHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
++ +K A+ I++L +GS G +L
Sbjct: 186 TSKMEHLKKADKILILHEGSSYFYGTFSEL 215
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 97/208 (46%), Gaps = 16/208 (7%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
VLKD K++ G ++A+ G +G+GK++++ +I +P++GK+ G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 1391 QTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESG 1450
+ + Q + GTI++NI + + IS + +GE G
Sbjct: 70 RISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 127
Query: 1451 VQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV-QDALRKVSKRATTIVVAH 1509
+ LSGGQ+ RI++ARA+ K + + K + + + K+ T I+V
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
Query: 1510 RLSTIREANMIAVVRDGAVVEYGSHETL 1537
++ +++A+ I ++ +G+ YG+ L
Sbjct: 188 KMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 20/216 (9%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
L +L+L + S + ++G +G GK+ LI F+ P G I LDG D+ L + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 751 IGMVGQEPILFA-TSILENVLMG---KENXXXXXXXXXXXXXXXHSFISELPLGYDTQVG 806
I V Q LF ++ +N+ G K+ + PL
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL------- 126
Query: 807 DRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGR--TTI 864
LSGG++QR+ALARA++ +P+ILLLDEP SALD ++ ++ + + T +
Sbjct: 127 ----TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 865 VIAHRLATVK-NANTIVVLDQGSVVEIGNHRQLLER 899
I H + A+ I V+ G ++++G ++ E+
Sbjct: 183 HITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 14/223 (6%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQ 1391
L + LKV+ G ++G +G+GK+ + LI F+ P+ G+++++G D+ +++ + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 1392 TALVGQEPALFAG-TIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESG 1450
A V Q +LF ++ N+ G K E + +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI--------EHLLDRNP 125
Query: 1451 VQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSK--RATTIVVA 1508
+ LSGG++QR+A+ARA++ ++ ++ ++ L + K + T + +
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185
Query: 1509 HRLSTIR-EANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
H + R A+ IAVV DG +++ G E + + G AS V
Sbjct: 186 HDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFV 228
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 11/213 (5%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
+ LNL I + L L+G SG GK+T +I +PT+G I D+ L K
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRN 84
Query: 751 IGMVGQEPILFA-TSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGDRG 809
I MV Q ++ ++ EN+ + +EL L + +
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAF----PLKIKKFPKDEIDKRVRWAAEL-LQIEELLNRYP 139
Query: 810 TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIA 867
QLSGGQ+QR+A+ARA++ +P +LL+DEP S LD++ ++ I K+ + TTI +
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199
Query: 868 H-RLATVKNANTIVVLDQGSVVEIGNHRQLLER 899
H ++ + + I V+++G +++IG+ ++ R
Sbjct: 200 HDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 106/235 (45%), Gaps = 14/235 (5%)
Query: 1303 GRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLI 1362
G +E K + ++L+ +T + + T + L +K G + L+G SG GK+T + +I
Sbjct: 1 GNNIEVIKMVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMI 57
Query: 1363 QRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKXXXXX 1421
+P +G++ D+ + K + ++V Q A++ T+ +NIA
Sbjct: 58 AGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK 115
Query: 1422 XXXXXXXXYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXX 1481
+ + + E + QLSGGQ+QR+A+ARAI+ V
Sbjct: 116 DEIDKRVRWAAELLQ-----IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 170
Query: 1482 XXXXXXXKHVQDALRKVSK--RATTIVVAH-RLSTIREANMIAVVRDGAVVEYGS 1533
++ ++K+ + + TTI V H ++ + + IAV+ G +++ GS
Sbjct: 171 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 225
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 11/213 (5%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQ 750
+ LNL I + L L+G SG GK+T +I +PT+G I D+ L K
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRN 85
Query: 751 IGMVGQEPILFA-TSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGDRG 809
I MV Q ++ ++ EN+ + +EL L + +
Sbjct: 86 ISMVFQSYAVWPHMTVYENIAF----PLKIKKFPKDEIDKRVRWAAEL-LQIEELLNRYP 140
Query: 810 TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIA 867
QLSGGQ+QR+A+ARA++ +P +LL+DEP S LD++ ++ I K+ + TTI +
Sbjct: 141 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 200
Query: 868 H-RLATVKNANTIVVLDQGSVVEIGNHRQLLER 899
H ++ + + I V+++G +++IG+ ++ R
Sbjct: 201 HDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 233
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 106/235 (45%), Gaps = 14/235 (5%)
Query: 1303 GRKLERSKPLGIELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLI 1362
G +E K + ++L+ +T + + T + L +K G + L+G SG GK+T + +I
Sbjct: 2 GNNIEVIKMVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMI 58
Query: 1363 QRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKXXXXX 1421
+P +G++ D+ + K + ++V Q A++ T+ +NIA
Sbjct: 59 AGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK 116
Query: 1422 XXXXXXXXYIHKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXX 1481
+ + + E + QLSGGQ+QR+A+ARAI+ V
Sbjct: 117 DEIDKRVRWAAELLQ-----IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 171
Query: 1482 XXXXXXXKHVQDALRKVSK--RATTIVVAH-RLSTIREANMIAVVRDGAVVEYGS 1533
++ ++K+ + + TTI V H ++ + + IAV+ G +++ GS
Sbjct: 172 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 226
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 15/210 (7%)
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
T +L+ +N I + LA+ G++G GK+++ +I +P++G I G Q W+
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 110
Query: 748 RTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGD 807
M G +I EN++ G IS+ + +G+
Sbjct: 111 -----MPG--------TIKENIIFGVSYDEYRYRSVIKACQLEED-ISKFAEKDNIVLGE 156
Query: 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE-SIVQQAIDKISVGRTTIVI 866
G LS GQ+ +I+LARA+ KD + LLD P LD +E I + + K+ +T I++
Sbjct: 157 GGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 867 AHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
++ +K A+ I++L +GS G +L
Sbjct: 217 TSKMEHLKKADKILILHEGSSYFYGTFSEL 246
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
VLKD K++ G ++A+ G +G+GK++++ +I +P++GK+ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1391 QTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESG 1450
+ + Q + GTI++NI G + + IS + +GE G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 1451 VQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV-QDALRKVSKRATTIVVAH 1509
+ LS GQ+ +I++ARA+ K + + K + + + K+ T I+V
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 1510 RLSTIREANMIAVVRDGAVVEYGSHETL 1537
++ +++A+ I ++ +G+ YG+ L
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 26/224 (11%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKS---LQ 743
+ V L ++N+ I + + ++G SG GK+T +I P+ G + D + S L
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 744 VKWLRTQIGMVGQEPILFATSI--------LENVLMGKENXXXXXXXXXXXXXXXHSFIS 795
V +IGMV Q L+ L N+ M KE H ++
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI-HHVLN 135
Query: 796 ELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAID 855
P +LSG Q+QR+ALARA++KDP +LLLDEP S LD+ + +
Sbjct: 136 HFP-----------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK 184
Query: 856 KIS--VGRTTIVIAHRLATV-KNANTIVVLDQGSVVEIGNHRQL 896
++ +G T +V++H A + A+ + VL +G +V++G L
Sbjct: 185 EVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 26/237 (10%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
+V L + + ++ G ++G SG+GK+T + +I P+ G++ + L N K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD-RLVASNGKL 75
Query: 1388 L----RKQTALVGQEPALFAG-TIRDNIA--LGNPKXXXXXXXXXXXXXY----IHKFIS 1436
+ ++ +V Q AL+ T +NIA L N K IH ++
Sbjct: 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN 135
Query: 1437 SLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALR 1496
P+ +LSG Q+QR+A+ARA++K + + ++
Sbjct: 136 HFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK 184
Query: 1497 KVSKR--ATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
+V R T +VV+H + I A+ + V+ G +V+ G E L + ++ ASL+
Sbjct: 185 EVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLI 241
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 74.3 bits (181), Expect = 5e-13, Method: Composition-based stats.
Identities = 57/222 (25%), Positives = 113/222 (50%), Gaps = 15/222 (6%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDL-----KS 741
E +R ++L + + + L+G SG GK+T +I +P++G I + G L K
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKG 73
Query: 742 LQVKWLRTQIGMVGQEPILFA-TSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLG 800
+ V I MV Q L+ ++ +N+ + ++EL LG
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE----VAEL-LG 128
Query: 801 YDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--S 858
+ + +LSGGQ+QR+AL RA+++ P++ L+DEP S LD++ ++ + K+
Sbjct: 129 LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ 188
Query: 859 VGRTTIVIAH-RLATVKNANTIVVLDQGSVVEIGNHRQLLER 899
+G TTI + H ++ + + I V+++G + ++G+ ++ ++
Sbjct: 189 LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
Score = 63.9 bits (154), Expect = 6e-10, Method: Composition-based stats.
Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 15/232 (6%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDL-----RE 1382
EVT +++ L+VK G + L+G SG GK+T + +I +P++G++ I G L +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKG 73
Query: 1383 INVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQG 1441
I V + A+V Q AL+ T+ DNIA + + + G
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-----G 128
Query: 1442 YETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKR 1501
+ +LSGGQ+QR+A+ RAI++ +V ++ L+K+ ++
Sbjct: 129 LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ 188
Query: 1502 --ATTIVVAH-RLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
TTI V H ++ + + IAV+ G + + GS + + N A +
Sbjct: 189 LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFI 240
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 102/199 (51%), Gaps = 19/199 (9%)
Query: 714 KSTVFALIERFYDPTKGLITLDGHDLKSL-------------QVKWLRTQIGMVGQEPIL 760
KST I P++G I ++G ++ + Q++ LRT++ MV Q L
Sbjct: 45 KSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 104
Query: 761 FA-TSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGDRGTQLSGGQKQR 819
++ ++LENV+ +++++ + Q G LSGGQ+QR
Sbjct: 105 WSHMTVLENVMEAPIQVLGLSKHDARERAL--KYLAKVGIDERAQ-GKYPVHLSGGQQQR 161
Query: 820 IALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHRLATVKNANT 878
+++ARA+ +P +LL DEPTSALD E V + + +++ G+T +V+ H + ++ ++
Sbjct: 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS 221
Query: 879 -IVVLDQGSVVEIGNHRQL 896
++ L QG + E G+ Q+
Sbjct: 222 HVIFLHQGKIEEEGDPEQV 240
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 102/226 (45%), Gaps = 19/226 (8%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREI------- 1383
VLK L+ + G +++++G SGSGKST + I P++G +++ G ++ +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 1384 ------NVKWLRKQTALVGQEPALFAG-TIRDNIALGNPKXXXXXXXXXXXXXYIHKFIS 1436
++ LR + +V Q L++ T+ +N+ + P + K+++
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV-MEAPIQVLGLSKHDARERAL-KYLA 138
Query: 1437 SLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALR 1496
+ Q G+ V LSGGQ+QR++IARA+ V V ++
Sbjct: 139 KVGIDERAQ-GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ 197
Query: 1497 KVSKRATT-IVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLAS 1540
++++ T +VV H + R ++ + + G + E G E + +
Sbjct: 198 QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 15/231 (6%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
+IE V+F Y +L+ +N + K +VG +G GK+T+ ++ G
Sbjct: 11 RIELNSVSFRYNG---DYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGE 66
Query: 732 ITLDGHDLKSLQVKWLRTQIGMVGQEPI--LFATSILENVLMGKENXXXXXXXXXXXXXX 789
I LDG LR +G V Q P + ++ E+V E
Sbjct: 67 IFLDGSPADPF---LLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKK 123
Query: 790 XHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
+ G LSGGQKQR+A+A + +D R L LDEP S LD S+
Sbjct: 124 VLELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQRE 178
Query: 850 VQQAIDKI-SVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLER 899
+ Q ++ + + G+ I++ H L + + + I+ + G++ G+ + +ER
Sbjct: 179 IFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 15/235 (6%)
Query: 1314 IELKMVTFTYPSRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
IEL V+F Y VLKD + + G + +VG +GSGK+T++ ++ G++
Sbjct: 12 IELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 1374 MIEGVDLREINVKWLRKQTALVGQEPA--LFAGTIRDNIALGNPKXXXXXXXXXXXXXYI 1431
++G + LRK V Q P+ + T+ +++A +
Sbjct: 68 FLDG---SPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKV 124
Query: 1432 HKFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV 1491
+ + G + LSGGQKQR+AIA + + +R + +
Sbjct: 125 LELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREI 179
Query: 1492 QDALRKVSKRATTIV-VAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGV 1545
L + I+ V H L + + + I + +G + GS E + + V
Sbjct: 180 FQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVEREFDDV 234
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 26/234 (11%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
++ + VT A+ E V+ + +NL I + + VG SG GKST+ +I GL
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMI-------AGLE 53
Query: 733 TLDGHDLKSLQVKWLRTQ-----IGMVGQEPILFA-TSILENVLMGKENXXXXXXXXXXX 786
T+ DL + + T +GMV Q L+ S+ EN+ G
Sbjct: 54 TITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG---LKLAGAKKEVI 110
Query: 787 XXXXHSFISELPLGYDTQVGDRGTQ-LSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
+ L L + + DR + LSGGQ+QR+A+ R ++ +P + LLDEP S LD+
Sbjct: 111 NQRVNQVAEVLQLAH---LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
Query: 846 SESIVQQAIDKI--SVGRTTIVIAH-RLATVKNANTIVVLDQGSVVEIGNHRQL 896
++ I ++ +GRT I + H ++ + A+ IVVLD G V ++G +L
Sbjct: 168 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 15/211 (7%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
EV V KD L + G V VG SG GKST++ +I G + I + R +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPP 72
Query: 1388 LRKQTALVGQEPALFAG-TIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQ- 1445
+ +V Q AL+ ++ +N++ G I++ ++ + + +
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFG-------LKLAGAKKEVINQRVNQVAEVLQLAH 125
Query: 1446 -VGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRA-- 1502
+ LSGGQ+QR+AI R ++ V ++ + ++ KR
Sbjct: 126 LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 1503 TTIVVAH-RLSTIREANMIAVVRDGAVVEYG 1532
T I V H ++ + A+ I V+ G V + G
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 26/234 (11%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
++ + VT A+ E V+ + +NL I + + VG SG GKST+ +I GL
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMI-------AGLE 53
Query: 733 TLDGHDLKSLQVKWLRTQ-----IGMVGQEPILFA-TSILENVLMGKENXXXXXXXXXXX 786
T+ DL + + T +GMV Q L+ S+ EN+ G
Sbjct: 54 TITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG---LKLAGAKKEVI 110
Query: 787 XXXXHSFISELPLGYDTQVGDRGTQ-LSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
+ L L + + DR + LSGGQ+QR+A+ R ++ +P + LLDEP S LD+
Sbjct: 111 NQRVNQVAEVLQLAH---LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
Query: 846 SESIVQQAIDKI--SVGRTTIVIAH-RLATVKNANTIVVLDQGSVVEIGNHRQL 896
++ I ++ +GRT I + H ++ + A+ IVVLD G V ++G +L
Sbjct: 168 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 15/211 (7%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
EV V KD L + G V VG SG GKST++ +I G + I + R +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPP 72
Query: 1388 LRKQTALVGQEPALFAG-TIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQ- 1445
+ +V Q AL+ ++ +N++ G I++ ++ + + +
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFG-------LKLAGAKKEVINQRVNQVAEVLQLAH 125
Query: 1446 -VGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRA-- 1502
+ LSGGQ+QR+AI R ++ V ++ + ++ KR
Sbjct: 126 LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 1503 TTIVVAH-RLSTIREANMIAVVRDGAVVEYG 1532
T I V H ++ + A+ I V+ G V + G
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 26/234 (11%)
Query: 673 IEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLI 732
++ + VT A+ E V+ + +NL I + + VG SG GKST+ +I GL
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMI-------AGLE 53
Query: 733 TLDGHDLKSLQVKWLRTQ-----IGMVGQEPILFA-TSILENVLMGKENXXXXXXXXXXX 786
T+ DL + + T +GMV Q L+ S+ EN+ G +
Sbjct: 54 TITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK---LAGAKKEVI 110
Query: 787 XXXXHSFISELPLGYDTQVGDRGTQ-LSGGQKQRIALARAMIKDPRILLLDEPTSALDSE 845
+ L L + + DR + LSGGQ+QR+A+ R ++ +P + LLD+P S LD+
Sbjct: 111 NQRVNQVAEVLQLAH---LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAA 167
Query: 846 SESIVQQAIDKI--SVGRTTIVIAH-RLATVKNANTIVVLDQGSVVEIGNHRQL 896
++ I ++ +GRT I + H ++ + A+ IVVLD G V ++G +L
Sbjct: 168 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 15/211 (7%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
EV V KD L + G V VG SG GKST++ +I G + I + R +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPP 72
Query: 1388 LRKQTALVGQEPALFAG-TIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQ- 1445
+ +V Q AL+ ++ +N++ G I++ ++ + + +
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFG-------LKLAGAKKEVINQRVNQVAEVLQLAH 125
Query: 1446 -VGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRA-- 1502
+ LSGGQ+QR+AI R ++ V ++ + ++ KR
Sbjct: 126 LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 1503 TTIVVAH-RLSTIREANMIAVVRDGAVVEYG 1532
T I V H ++ + A+ I V+ G V + G
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 16/210 (7%)
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL 747
T +L+ +N I + LA+ G++G GK+++ +I +P++G I G Q W+
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 110
Query: 748 RTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGD 807
M G +I EN++ + IS+ + +G+
Sbjct: 111 -----MPG--------TIKENIIGVSYDEYRYRSVIKACQLEED--ISKFAEKDNIVLGE 155
Query: 808 RGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE-SIVQQAIDKISVGRTTIVI 866
G LS GQ+ +I+LARA+ KD + LLD P LD +E I + + K+ +T I++
Sbjct: 156 GGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 215
Query: 867 AHRLATVKNANTIVVLDQGSVVEIGNHRQL 896
++ +K A+ I++L +GS G +L
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSEL 245
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 96/208 (46%), Gaps = 16/208 (7%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
VLKD K++ G ++A+ G +G+GK++++ +I +P++GK+ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1391 QTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESG 1450
+ + Q + GTI++NI + + IS + +GE G
Sbjct: 100 RISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 1451 VQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV-QDALRKVSKRATTIVVAH 1509
+ LS GQ+ +I++ARA+ K + + K + + + K+ T I+V
Sbjct: 158 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 1510 RLSTIREANMIAVVRDGAVVEYGSHETL 1537
++ +++A+ I ++ +G+ YG+ L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 70.9 bits (172), Expect = 5e-12, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 35/226 (15%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG-------HDLKSL 742
IL+ ++ I + L+G +G GK+T +I P+ G++T+ G H+++ L
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 743 QVKWLRTQIG----MVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELP 798
+ +L + G M G E + F + E
Sbjct: 90 -ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA-------------- 134
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD----SESESIVQQAI 854
G ++ DR + S G +++ +ARA++ +PR+ +LDEPTS LD E I++QA
Sbjct: 135 -GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 855 DKISVGRTTIVIAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLER 899
+ G T +V +H + V+ + I ++ G++VE G +L ER
Sbjct: 194 QE---GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/211 (21%), Positives = 93/211 (44%), Gaps = 11/211 (5%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
+LK +++ G + L+G +G+GK+T + +I P+ G V + G ++ E +RK
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 1391 QTALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQ--GYETQVGE 1448
+ + +E AG R+ G I + + + G ++ +
Sbjct: 89 LISYLPEE----AGAYRN--MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD 142
Query: 1449 SGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATTIVV- 1507
S G +++ IARA++ R+ + V+ L++ S+ TI+V
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202
Query: 1508 AHRLSTIR-EANMIAVVRDGAVVEYGSHETL 1537
+H + + + IA++ +G +VE G+ E L
Sbjct: 203 SHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 70.5 bits (171), Expect = 8e-12, Method: Composition-based stats.
Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 9/212 (4%)
Query: 691 LRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWL-RT 749
++ ++L +P + + L+G +G GK+T + I KG I +G D+ + + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 750 QIGMVGQEPILFAT-SILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVGDR 808
I +V + +F ++ EN+ G N +I L ++
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDL-----EWIFSLFPRLKERLKQL 136
Query: 809 GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAH 868
G LSGG++Q +A+ RA+ P++L DEP+ L S V + I KI+ TTI++
Sbjct: 137 GGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVE 196
Query: 869 R--LATVKNANTIVVLDQGSVVEIGNHRQLLE 898
+ L +K A+ VL+ G +V G +LL+
Sbjct: 197 QNALGALKVAHYGYVLETGQIVLEGKASELLD 228
Score = 53.5 bits (127), Expect = 9e-07, Method: Composition-based stats.
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 13/216 (6%)
Query: 1329 VTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWL 1388
+ +K LKV G +V L+G +G+GK+T + I +GK++ G D+ +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 1389 -RKQTALVGQEPALFAG-TIRDNIALG--NPKXXXXXXXXXXXXXYIHKFISSLPQGYET 1444
R ALV + +F T+ +N+ G N K ++I SL +
Sbjct: 79 NRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDL-------EWIFSLFPRLKE 131
Query: 1445 QVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKRATT 1504
++ + G LSGG++Q +AI RA+ ++ V + ++K+++ TT
Sbjct: 132 RLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTT 191
Query: 1505 IVVAHR--LSTIREANMIAVVRDGAVVEYGSHETLL 1538
I++ + L ++ A+ V+ G +V G LL
Sbjct: 192 ILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 70.1 bits (170), Expect = 9e-12, Method: Composition-based stats.
Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 19/222 (8%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW 746
+ ++ ++L I S + +A++G +G GKST+ L+ + P+ G L G +L S Q K
Sbjct: 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKA 82
Query: 747 L-RTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQV 805
L RT+ M + F S+ E + MG+ + L D +V
Sbjct: 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA-QRDYRV 141
Query: 806 GDRGTQLSGGQKQRIALARAMIK------DPRILLLDEPTSALD----SESESIVQQAID 855
LSGG++QR+ LAR + + PR L LDEPTSALD + +++Q
Sbjct: 142 ------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR 195
Query: 856 KISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLL 897
+ + ++ LA + A+ I++L QG +V G ++L
Sbjct: 196 QEPLAVCCVLHDLNLAALY-ADRIMLLAQGKLVACGTPEEVL 236
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRK 1390
++ D L + G MVA++G +G+GKST++ L+ + P+ G+ + G +L K L +
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 1391 QTALVGQEPAL-FAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQ-GYETQVGE 1448
A++ Q L F ++ + I +G +L Q Y
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRV---- 141
Query: 1449 SGVQLSGGQKQRIAIARAI 1467
LSGG++QR+ +AR +
Sbjct: 142 ----LSGGEQQRVQLARVL 156
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 15/214 (7%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDL----KSL 742
+ ++ L+L I + L L+G SG GK+T I +PT+G I ++ + + K +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 743 QVKWLRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELP--LG 800
V + V Q L+ + +N + E+ LG
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTV------YDNIAFPLKLRKVPKQEIDKRVREVAEXLG 131
Query: 801 YDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--S 858
+ + +LSGGQ+QR+AL RA+I+ P++ L DEP S LD++ + + K+
Sbjct: 132 LTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQ 191
Query: 859 VGRTTIVIAH-RLATVKNANTIVVLDQGSVVEIG 891
+G TTI + H ++ + I V ++G + ++G
Sbjct: 192 LGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVG 225
Score = 65.1 bits (157), Expect = 3e-10, Method: Composition-based stats.
Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 17/233 (7%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLRE----I 1383
+VT +KD L++K G + L+G SG GK+T + I +P +G++ IE + + +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 1384 NVKWLRKQTALVGQEPALFA-GTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQ-- 1440
V + A V Q AL+ T+ DNIA I K + + +
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAF-------PLKLRKVPKQEIDKRVREVAEXL 130
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSK 1500
G + +LSGGQ+QR+A+ RAI++ +V + L+K+ +
Sbjct: 131 GLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQR 190
Query: 1501 R--ATTIVVAH-RLSTIREANMIAVVRDGAVVEYGSHETLLASHLNGVYASLV 1550
+ TTI V H ++ + IAV G + + G+ + + +N A +
Sbjct: 191 QLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTFVAGFI 243
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 67.0 bits (162), Expect = 8e-11, Method: Composition-based stats.
Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 51/233 (21%)
Query: 685 RPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQV 744
+ E + + LN + LA++G +G GKST+ L+ + P +G I +
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV---------- 64
Query: 745 KWLRTQIGMVGQ---EPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGY 801
IG V Q P FA S+L+ VLMG+ H P +
Sbjct: 65 ---YQSIGFVPQFFSSP--FAYSVLDIVLMGRST---------------HINTFAKPKSH 104
Query: 802 DTQVGDRG--------------TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESE 847
D QV + T LSGGQ+Q I +ARA+ + +++LLDEPTSALD ++
Sbjct: 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 848 SIVQQAIDKI--SVGRTTIVIAHRL-ATVKNANTIVVLDQGSVVEIGNHRQLL 897
IV + + S T + H+ V AN ++L++ + + G R +L
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216
Score = 34.7 bits (78), Expect = 0.45, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 43/141 (30%)
Query: 1342 GSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQ-EPA 1400
G ++A++G +G GKST++ L+ + P QGK+ + + V Q +
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQSIGFVPQFFSS 77
Query: 1401 LFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLPQGYETQVGESGV--------- 1451
FA ++ D + +G +I+ F + P+ ++ QV +
Sbjct: 78 PFAYSVLDIVLMGR-------------STHINTF--AKPKSHDYQVAMQALDYLNLTHLA 122
Query: 1452 -----QLSGGQKQRIAIARAI 1467
LSGGQ+Q I IARAI
Sbjct: 123 KREFTSLSGGQRQLILIARAI 143
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 19/219 (8%)
Query: 688 TVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDL--KSLQVK 745
T +L ++L + + L ++G SG GK+T+ + F P G I+L G + K+ +
Sbjct: 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLP 76
Query: 746 WLRTQIGMVGQEPILFA-TSILENVLMGKENXXXXXXXXXXXXXXXHSF--ISELPLGYD 802
++G + QE +LF ++ N+ G N ISEL
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISEL----- 131
Query: 803 TQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISV--- 859
G +LSGGQ+QR ALARA+ DP ++LLDEP SALD + +++ D I+
Sbjct: 132 --AGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRE--DMIAALRA 187
Query: 860 -GRTTIVIAH-RLATVKNANTIVVLDQGSVVEIGNHRQL 896
G++ + ++H R ++ A+ I V+ QG +++ + +L
Sbjct: 188 NGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 1331 VLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDL--REINVKWL 1388
VL D L + G ++ ++G SG GK+T++ + F P+ G++ + G + + N+
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 1389 RKQTALVGQEPALFAG-TIRDNIA--LGNPK 1416
++ + QE LF T+ NIA LGN K
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK 109
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 13/218 (5%)
Query: 694 LNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT----KGLITLDGHDLKSLQVKWLRT 749
++L I + A+VG S GKST+ + + P G + G DL +++ + LR
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 750 ----QIGMVGQEPILFATSILENVLMGKENXXXXXX--XXXXXXXXXHSFISELPLGYDT 803
+I +V Q ++ + K+ + + L +
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEA 146
Query: 804 QVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESES-IVQQAIDKISVGRT 862
+ QLSGG KQR+ +A A++ DP +L+LDEPTSALD +++ I+Q + + +
Sbjct: 147 VLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKI 206
Query: 863 TIV-IAHRLATVKN-ANTIVVLDQGSVVEIGNHRQLLE 898
T++ + H +A A+ + V+ G++VE + Q+ +
Sbjct: 207 TLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFK 244
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 97/241 (40%), Gaps = 25/241 (10%)
Query: 1337 LKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPN----QGKVMIEGVDLREINVKWLRKQT 1392
L + S+ A+VG S SGKST+I + + PN G+V+ +G DL + + LRK
Sbjct: 29 LDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK-- 86
Query: 1393 ALVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXY---------IHKFISSLPQ--- 1440
+ +E AL + ++ NP + I K L
Sbjct: 87 -IRWKEIALVPQAAQQSL---NPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRL 142
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV--QDALRKV 1498
E + +QLSGG KQR+ IA A+L V H+ K
Sbjct: 143 NPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKK 202
Query: 1499 SKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHETLLASHLNGVYASLVRAETEAN 1557
+ T I V H ++ E A+ +AV+ G +VEY S + + L+ L+ + N
Sbjct: 203 MLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTRGLINSIMAVN 262
Query: 1558 A 1558
A
Sbjct: 263 A 263
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 22/203 (10%)
Query: 706 LVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVG--QEP-ILFA 762
++G +G GKST+ +I F +G + + D+ + + L G+V Q P L
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIVRTFQTPQPLKE 96
Query: 763 TSILENVLMGKENXXXXXXXX----------XXXXXXXHSFISELPLG--YDTQVGDRGT 810
++LEN+L+G+ N + L L YD + G
Sbjct: 97 MTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG---- 152
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSAL-DSESESIVQQAIDKISVGRTTIVIAHR 869
+LSGGQ + + + RA++ +P+++++DEP + + + I ++ + G T ++I HR
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
Query: 870 LATVKN-ANTIVVLDQGSVVEIG 891
L V N + + V+ G ++ G
Sbjct: 213 LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 38.5 bits (88), Expect = 0.026, Method: Composition-based stats.
Identities = 52/225 (23%), Positives = 90/225 (40%), Gaps = 22/225 (9%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
E L + V G + ++G +GSGKST+I +I F ++G+V E D+
Sbjct: 19 EFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 1388 LRKQTAL-VGQEP-ALFAGTIRDNIALG--NP-----------KXXXXXXXXXXXXXYIH 1432
L + Q P L T+ +N+ +G NP K I
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV- 1491
+F+ L Y+ + GE LSGGQ + + I RA++ ++ +
Sbjct: 139 EFL-KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
Query: 1492 QDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHE 1535
L +K T +++ HRL + + + V+ +G ++ G E
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 24/236 (10%)
Query: 684 SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALI--ERFYDPTKGLITLDGHDLKS 741
S + ILR L+L + + A++G +G GKST+ A + Y+ T G + G DL +
Sbjct: 10 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 69
Query: 742 LQVKWLRTQ-IGMVGQEPI--------LFATSILENV--LMGKENXXXXXXXXXXXXXXX 790
L + + I M Q P+ F + L V G+E
Sbjct: 70 LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA 129
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
+ E L VG SGG+K+R + + + +P + +LDE S LD ++ +V
Sbjct: 130 LLKMPEDLLTRSVNVG-----FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 184
Query: 851 QQAIDKISVG-RTTIVIAH--RLATVKNANTIVVLDQGSVVEIGNH---RQLLERG 900
++ + G R+ I++ H R+ + + VL QG +V+ G+ +QL E+G
Sbjct: 185 ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQG 240
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 24/236 (10%)
Query: 684 SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALI--ERFYDPTKGLITLDGHDLKS 741
S + ILR L+L + + A++G +G GKST+ A + Y+ T G + G DL +
Sbjct: 29 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 88
Query: 742 LQVKWLRTQ-IGMVGQEPI--------LFATSILENV--LMGKENXXXXXXXXXXXXXXX 790
L + + I M Q P+ F + L V G+E
Sbjct: 89 LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA 148
Query: 791 HSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIV 850
+ E L VG SGG+K+R + + + +P + +LDE S LD ++ +V
Sbjct: 149 LLKMPEDLLTRSVNVG-----FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 203
Query: 851 QQAIDKISVG-RTTIVIAH--RLATVKNANTIVVLDQGSVVEIGNH---RQLLERG 900
++ + G R+ I++ H R+ + + VL QG +V+ G+ +QL E+G
Sbjct: 204 ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQG 259
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 38/208 (18%)
Query: 698 IPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQE 757
I + + +VG +G GK+T ++ +PT+G + D L V + + Q E
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD------LTVAY-KPQYIKAEYE 431
Query: 758 PILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISEL--PLG----YDTQVGDRGTQ 811
++ +L + K N + + +EL PLG YD V D
Sbjct: 432 GTVY--ELLSKIDSSKLNS--------------NFYKTELLKPLGIIDLYDRNVED---- 471
Query: 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAHR 869
LSGG+ QR+A+A +++D I LLDEP++ LD E V +AI + +T +V+ H
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531
Query: 870 LATVKNANTIVVLDQGSVVEIGNHRQLL 897
+ + + +++ +G E G H + L
Sbjct: 532 VLMIDYVSDRLIVFEG---EPGRHGRAL 556
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHR 869
QLSGG+ QR+A+A A+++ DEP+S LD V + I +++ G+ +V+ H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 870 LATVKNANTIV 880
LA + + ++
Sbjct: 288 LAVLDYLSDVI 298
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 1338 KVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+++ G ++ +VG +G GK+T + ++ +P +GKV
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 38/208 (18%)
Query: 698 IPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQE 757
I + + +VG +G GK+T ++ +PT+G + D L V + + Q E
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD------LTVAY-KPQYIKAEYE 417
Query: 758 PILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISEL--PLG----YDTQVGDRGTQ 811
++ +L + K N + + +EL PLG YD V D
Sbjct: 418 GTVY--ELLSKIDSSKLNS--------------NFYKTELLKPLGIIDLYDRNVED---- 457
Query: 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI--SVGRTTIVIAHR 869
LSGG+ QR+A+A +++D I LLDEP++ LD E V +AI + +T +V+ H
Sbjct: 458 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 517
Query: 870 LATVKNANTIVVLDQGSVVEIGNHRQLL 897
+ + + +++ +G E G H + L
Sbjct: 518 VLMIDYVSDRLIVFEG---EPGRHGRAL 542
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHR 869
QLSGG+ QR+A+A A+++ DEP+S LD V + I +++ G+ +V+ H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 870 LATVKNANTIV 880
LA + + ++
Sbjct: 274 LAVLDYLSDVI 284
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 1338 KVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
+++ G ++ +VG +G GK+T + ++ +P +GKV
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 9/217 (4%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALI--ERFYDPTKGLITLDGHDLKSLQV-KW 746
IL+ +NLV+P + AL+G +G GKST+ ++ + Y +G I LDG ++ L +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 747 LRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVG 806
R + + Q P+ + N L EL L +D
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALEL-LDWDESYL 136
Query: 807 DR--GTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKI---SVGR 861
R SGG+K+R + + ++ +P +LDE S LD ++ +V + ++ + + G
Sbjct: 137 SRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGA 196
Query: 862 TTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLE 898
I R+ + + V+ G VV G LE
Sbjct: 197 LVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALE 233
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 54/224 (24%), Positives = 91/224 (40%), Gaps = 11/224 (4%)
Query: 1330 TVLKDFCLKVKGGSMVALVGGSGSGKSTV--IWLIQRFYDPNQGKVMIEGVDLREINV-K 1386
T+LK L V G + AL+G +G+GKST+ I Y +G+++++G ++ E++ +
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76
Query: 1387 WLRKQTALVGQEPALFAG-TIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSL--PQGYE 1443
RK L Q P G TI + + L + K + L + Y
Sbjct: 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL 136
Query: 1444 TQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQ---DALRKVSK 1500
++ G SGG+K+R I + ++ K V +A+R +
Sbjct: 137 SRYLNEG--FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNF 194
Query: 1501 RATTIVVAHRLSTIREANMIAVVRDGAVVEYGSHETLLASHLNG 1544
A I R+ + + + V+ DG VV G E L G
Sbjct: 195 GALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKG 238
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 94/203 (46%), Gaps = 22/203 (10%)
Query: 706 LVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVG--QEP-ILFA 762
++G +G GKST+ +I F +G + + D+ + + L G+V Q P L
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIVRTFQTPQPLKE 96
Query: 763 TSILENVLMGKENXXXXXXXX----------XXXXXXXHSFISELPLG--YDTQVGDRGT 810
++LEN+L+G+ N + L L YD + G
Sbjct: 97 MTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG---- 152
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSAL-DSESESIVQQAIDKISVGRTTIVIAHR 869
+LSGGQ + + + RA++ +P+++++D+P + + + I ++ + G T ++I HR
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
Query: 870 LATVKN-ANTIVVLDQGSVVEIG 891
L V N + + V+ G ++ G
Sbjct: 213 LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 52/225 (23%), Positives = 90/225 (40%), Gaps = 22/225 (9%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
E L + V G + ++G +GSGKST+I +I F ++G+V E D+
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 1388 LRKQTAL-VGQEP-ALFAGTIRDNIALG--NP-----------KXXXXXXXXXXXXXYIH 1432
L + Q P L T+ +N+ +G NP K I
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV- 1491
+F+ L Y+ + GE LSGGQ + + I RA++ ++ +
Sbjct: 139 EFL-KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIF 193
Query: 1492 QDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHE 1535
L +K T +++ HRL + + + V+ +G ++ G E
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 35/179 (19%)
Query: 698 IPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVGQE 757
I + + +VG +G GK+T + +PT+G I D L V + + Q E
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD------LTVAY-KPQYIKADYE 361
Query: 758 PILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISEL--PLG----YDTQVGDRGTQ 811
++ +L + K N + + +EL PLG YD +V +
Sbjct: 362 GTVY--ELLSKIDASKLNS--------------NFYKTELLKPLGIIDLYDREV----NE 401
Query: 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVG--RTTIVIAH 868
LSGG+ QR+A+A +++D I LLDEP++ LD E V +AI + +T +V+ H
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKIS-VGRTTIVIAHR 869
LSGG+ QR+A+A A++++ DEP+S LD +AI ++S G++ +V+ H
Sbjct: 158 HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217
Query: 870 LATVKNANTIV 880
LA + + I+
Sbjct: 218 LAVLDYLSDII 228
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 35/203 (17%)
Query: 1338 KVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKWLRKQTALVGQ 1397
++K G ++ +VG +G GK+T + + +P +GK ++W V
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGK------------IEW----DLTVAY 351
Query: 1398 EP----ALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHKFISSLP--QGYETQVGESGV 1451
+P A + GT+ + ++ Y + + L Y+ +V E
Sbjct: 352 KPQYIKADYEGTVYELLS-------KIDASKLNSNFYKTELLKPLGIIDLYDREVNE--- 401
Query: 1452 QLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHVQDALRKVSKR--ATTIVVAH 1509
LSGG+ QR+AIA +L+ + + V A+R + ++ T +VV H
Sbjct: 402 -LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 1510 RLSTIREANMIAVVRDGAVVEYG 1532
+ I + V +G +YG
Sbjct: 461 DVLXIDYVSDRLXVFEGEPGKYG 483
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 22/203 (10%)
Query: 706 LVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKWLRTQIGMVG--QEP-ILFA 762
++G +G GKST+ +I F +G + + D+ + + L G+V Q P L
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIVRTFQTPQPLKE 96
Query: 763 TSILENVLMGK--------ENXXXXXXXXXXXXXXXHSF----ISELPLGYDTQVGDRGT 810
++LEN+L+G+ + +F +L YD + G
Sbjct: 97 MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG---- 152
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSAL-DSESESIVQQAIDKISVGRTTIVIAHR 869
+LSGGQ + + + RA++ +P+++++DEP + + + I ++ + G T ++I HR
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
Query: 870 LATVKN-ANTIVVLDQGSVVEIG 891
L V N + + V+ G ++ G
Sbjct: 213 LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 38.1 bits (87), Expect = 0.038, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 22/225 (9%)
Query: 1328 EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKVMIEGVDLREINVKW 1387
E L + V G + ++G +GSGKST+I +I F ++G+V E D+
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 1388 LRKQTAL-VGQEP-ALFAGTIRDNIALGN-------------PKXXXXXXXXXXXXXYIH 1432
L + Q P L T+ +N+ +G K I
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 1433 KFISSLPQGYETQVGESGVQLSGGQKQRIAIARAILKGSRVXXXXXXXXXXXXXXXKHV- 1491
+F+ L Y+ + GE LSGGQ + + I RA++ ++ +
Sbjct: 139 EFL-KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
Query: 1492 QDALRKVSKRATTIVVAHRLSTIRE-ANMIAVVRDGAVVEYGSHE 1535
L +K T +++ HRL + + + V+ +G ++ G E
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 794 ISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR---ILLLDEPTSAL-DSESESI 849
+ E+ LGY ++G T+LSGG+ QRI LA + + R + +LDEPT+ L ++ E +
Sbjct: 714 LREVGLGY-LRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERL 772
Query: 850 VQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGS 886
+Q + + G T I + H++ V ++ ++ + G+
Sbjct: 773 QRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGA 809
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 807 DRGTQ-LSGGQKQRIALARAMIKD--PRILLLDEPTSALDSESESIVQQAIDKISVGRTT 863
DR T LS G+ QR+ LA + + + +LDEP++ L + A++ + G +
Sbjct: 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNS 433
Query: 864 I-VIAHRLATVKNANTIV 880
+ V+ H L ++ A+ +V
Sbjct: 434 LFVVEHDLDVIRRADWLV 451
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR---ILLLDEPTSALDSESESIVQQAID 855
LGY ++G T LSGG+ QRI LA + K + +LDEPT L E + + +
Sbjct: 794 LGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLH 852
Query: 856 K-ISVGRTTIVIAHRLATVKNANTIVVL 882
+ + G T IVI H L +KNA+ I+ L
Sbjct: 853 RLVDRGNTVIVIEHNLDVIKNADHIIDL 880
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR--ILLLDEPTSALDSESESI 849
F+ ++ L Y T + T LSGG+ QRI LA + I +LDEPT L
Sbjct: 446 EFLVDVGLEYLT-LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTER 504
Query: 850 VQQAIDKI-SVGRTTIVIAHRLATVKNANTIV 880
+ + + K+ +G T IV+ H ++NA+ I+
Sbjct: 505 LIKTLKKLRDLGNTVIVVEHDEEVIRNADHII 536
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 1441 GYETQVGESGVQLSGGQKQRIAIARAILK---GSRVXXXXXXXXXXXXXXXKHVQDALRK 1497
GY ++G+ LSGG+ QRI +A + K G + + + + L +
Sbjct: 795 GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853
Query: 1498 VSKRATT-IVVAHRLSTIREANMI 1520
+ R T IV+ H L I+ A+ I
Sbjct: 854 LVDRGNTVIVIEHNLDVIKNADHI 877
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 27/181 (14%)
Query: 802 DTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGR 861
D + + LSGG K ++ALARA++++ ILLLDEPT+ LD+ + + + ++ + G
Sbjct: 539 DEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGI 596
Query: 862 TTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQ 921
T+I I+H + N ++ +G +L + G + + VK A + +
Sbjct: 597 TSITISHDSVFLDNVCEYIINYEG--------LKLRKYKGNFTEFVKKCPAAKAYEELSN 648
Query: 922 KDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSE 981
D +EF E +E +++ +A ++ E Q P K Q+++
Sbjct: 649 TD----LEFKFPEPGYLEGVKTK-------------QKAIVKVTNXEFQYPGTSKPQITD 691
Query: 982 I 982
I
Sbjct: 692 I 692
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 799 LGYDTQV--GDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK 856
LG D ++ R LSGGQK ++ LA + P +++LDEPT+ LD +S + +A+ +
Sbjct: 887 LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946
Query: 857 ISVGRTTIVIAHRLATVKN 875
G I+I H KN
Sbjct: 947 FEGG--VIIITHSAEFTKN 963
Score = 33.5 bits (75), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 1321 FTYP--SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
F YP S+P++T D + S +A++G +G+GKST+I ++ P G+V
Sbjct: 679 FQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 615 CFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIID-----RVPEIDPYNSEGRKLSSV 669
C + +N G L F +F + AA E+ + + PE P EG K +
Sbjct: 612 CEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPE--PGYLEGVK-TKQ 668
Query: 670 SGKIEFKGVTFAYP--SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP 727
++ F YP S+P+ + +N S +A++G +G GKST+ ++ P
Sbjct: 669 KAIVKVTNXEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Query: 728 TKGLI 732
T G +
Sbjct: 726 TSGEV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 27/181 (14%)
Query: 802 DTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGR 861
D + + LSGG K ++ALARA++++ ILLLDEPT+ LD+ + + + ++ + G
Sbjct: 533 DEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGI 590
Query: 862 TTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQ 921
T+I I+H + N ++ +G +L + G + + VK A + +
Sbjct: 591 TSITISHDSVFLDNVCEYIINYEG--------LKLRKYKGNFTEFVKKCPAAKAYEELSN 642
Query: 922 KDAKRGIEFSIYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSE 981
D +EF E +E +++ +A ++ E Q P K Q+++
Sbjct: 643 TD----LEFKFPEPGYLEGVKTK-------------QKAIVKVTNXEFQYPGTSKPQITD 685
Query: 982 I 982
I
Sbjct: 686 I 686
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 799 LGYDTQV--GDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK 856
LG D ++ R LSGGQK ++ LA + P +++LDEPT+ LD +S + +A+ +
Sbjct: 881 LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 940
Query: 857 ISVGRTTIVIAHRLATVKN 875
G I+I H KN
Sbjct: 941 FEGG--VIIITHSAEFTKN 957
Score = 33.5 bits (75), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 1321 FTYP--SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGKV 1373
F YP S+P++T D + S +A++G +G+GKST+I ++ P G+V
Sbjct: 673 FQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 615 CFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIID-----RVPEIDPYNSEGRKLSSV 669
C + +N G L F +F + AA E+ + + PE P EG K +
Sbjct: 606 CEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPE--PGYLEGVK-TKQ 662
Query: 670 SGKIEFKGVTFAYP--SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP 727
++ F YP S+P+ + +N S +A++G +G GKST+ ++ P
Sbjct: 663 KAIVKVTNXEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 719
Query: 728 TKGLI 732
T G +
Sbjct: 720 TSGEV 724
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 29/225 (12%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW 746
E+ L L+ + + + L LVG +G GKST+ A + KG I G L++ W
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEA----W 66
Query: 747 LRTQIGM-----VGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGY 801
T++ + Q+ FAT + + + + + L
Sbjct: 67 SATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA----------LAL 116
Query: 802 DTQVGDRGTQLSGGQKQRIALARAMIK-----DP--RILLLDEPTSALDSESESIVQQAI 854
D ++G QLSGG+ QR+ LA +++ +P ++LLLD+P ++LD +S + + +
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKIL 176
Query: 855 DKISVGRTTIVI-AHRLA-TVKNANTIVVLDQGSVVEIGNHRQLL 897
+S IV+ +H L T+++A+ +L G ++ G ++L
Sbjct: 177 SALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 29/225 (12%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW 746
E+ L L+ + + + L LVG +G GKST+ A + KG I G L++ W
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEA----W 66
Query: 747 LRTQIGM-----VGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGY 801
T++ + Q+ FAT + + + + + L
Sbjct: 67 SATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA----------LAL 116
Query: 802 DTQVGDRGTQLSGGQKQRIALARAMIK-----DP--RILLLDEPTSALDSESESIVQQAI 854
D ++G QLSGG+ QR+ LA +++ +P ++LLLD+P +LD +S + + +
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKIL 176
Query: 855 DKISVGRTTIVI-AHRLA-TVKNANTIVVLDQGSVVEIGNHRQLL 897
+S IV+ +H L T+++A+ +L G ++ G ++L
Sbjct: 177 SALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 27/171 (15%)
Query: 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRLA 871
LSGG K ++ALARA++++ ILLLDEPT+ LD+ + + + ++ + G T+I I+H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISHDSV 606
Query: 872 TVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVKLASEAVSQPQSKQKDAKRGIEFS 931
+ N ++ +G +L + G + + VK A + + D +EF
Sbjct: 607 FLDNVCEYIINYEG--------LKLRKYKGNFTEFVKKCPAAKAYEELSNTD----LEFK 654
Query: 932 IYEKSVIEVSRSRYANEVSKSKYFKSMQAEIQTVEEEQQKPRPRKFQLSEI 982
E +E +++ +A ++ E Q P K Q+++I
Sbjct: 655 FPEPGYLEGVKTK-------------QKAIVKVTNMEFQYPGTSKPQITDI 692
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 799 LGYDTQV--GDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK 856
LG D ++ R LSGGQK ++ LA + P +++LDEPT+ LD +S + +A+ +
Sbjct: 887 LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946
Query: 857 ISVGRTTIVIAHRLATVKN 875
G I+I H KN
Sbjct: 947 FEGG--VIIITHSAEFTKN 963
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 615 CFFGVNVGGRGLALSLSYFAQFAQGTVAATRVFEIID-----RVPEIDPYNSEGRKLSSV 669
C + +N G L F +F + AA E+ + + PE P EG K +
Sbjct: 612 CEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPE--PGYLEGVK-TKQ 668
Query: 670 SGKIEFKGVTFAYP--SRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDP 727
++ + F YP S+P+ + +N S +A++G +G GKST+ ++ P
Sbjct: 669 KAIVKVTNMEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Query: 728 TKG 730
T G
Sbjct: 726 TSG 728
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 1314 IELKMVTFTYP--SRPEVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQG 1371
+++ + F YP S+P++T D + S +A++G +G+GKST+I ++ P G
Sbjct: 672 VKVTNMEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 1372 KV 1373
+V
Sbjct: 729 EV 730
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 33/227 (14%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT--KGLITLDGHDLKSLQV 744
E+ L L+ + + + L LVG +G GKST+ A R T KG I G L++
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEA--- 65
Query: 745 KWLRTQIGM-----VGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPL 799
W T++ + Q+ FAT + + + + + L
Sbjct: 66 -WSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA----------L 114
Query: 800 GYDTQVGDRGTQLSGGQKQRIALARAMIK-----DP--RILLLDEPTSALDSESESIVQQ 852
D ++G QLSGG+ QR+ LA +++ +P ++LLLDEP ++LD +S + +
Sbjct: 115 ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDK 174
Query: 853 AIDKIS-VGRTTIVIAHRLA-TVKNANTIVVLDQGSVVEIGNHRQLL 897
+ +S G + +H L T+++A+ +L G + G ++L
Sbjct: 175 ILSALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 41/231 (17%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT--KGLITLDGHDLKSLQV 744
E+ L L+ + + + L LVG +G GKST+ A R T KG I G L++
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEA--- 65
Query: 745 KWLRTQIGM-----VGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPL 799
W T++ + Q+ FAT + + + + + L
Sbjct: 66 -WSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA----------L 114
Query: 800 GYDTQVGDRGTQLSGGQKQRIALARAMIK-----DP--RILLLDEPTSALDSESESIVQQ 852
D ++G QLSGG+ QR+ LA +++ +P ++LLLDEP ++LD +S
Sbjct: 115 ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQS---- 170
Query: 853 AIDKI-----SVGRTTIVIAHRLA-TVKNANTIVVLDQGSVVEIGNHRQLL 897
A+DKI G + +H L T+++A+ +L G + G ++L
Sbjct: 171 ALDKILSALCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 8/160 (5%)
Query: 690 ILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSL--QVKWL 747
IL+ ++ I L G +G GK+T+ ++ + T G + L G + + +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 748 RTQIGMVGQ---EPILFATSILENVLMGK-ENXXXXXXXXXXXXXXXHSFISELPLGYDT 803
R IG V E +++ V+ G ++ H + +G
Sbjct: 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLK--LVGXSA 153
Query: 804 QVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALD 843
+ LS G+KQR+ +ARA+ P++L+LDEP + LD
Sbjct: 154 KAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 82/201 (40%), Gaps = 40/201 (19%)
Query: 680 FAYPSRPET---VILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDG 736
F+YPS +T +L S+ L ++G +G GK+T+ L+ P +G
Sbjct: 354 FSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD------EG 407
Query: 737 HDLKSLQVKWLRTQI-----GMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXH 791
D+ L V +I G V Q LF I L
Sbjct: 408 QDIPKLNVSMKPQKIAPKFPGTVRQ---LFFKKIRGQFL-------------------NP 445
Query: 792 SFISEL--PLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESI 849
F +++ PL D + LSGG+ QR+A+ A+ I L+DEP++ LDSE I
Sbjct: 446 QFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRII 505
Query: 850 VQQAIDKISV--GRTTIVIAH 868
+ I + + +T ++ H
Sbjct: 506 CSKVIRRFILHNKKTAFIVEH 526
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 32/154 (20%)
Query: 1321 FTYPSRPEVTVLKDFCLKVKGGS-----MVALVGGSGSGKSTVIWLIQRFYDPNQGKVMI 1375
F+YPS + DF L V+ G ++ ++G +G+GK+T+I L+ P++G+
Sbjct: 354 FSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ--- 408
Query: 1376 EGVDLREINVKWLRKQTA--LVGQEPALFAGTIRDNIALGNPKXXXXXXXXXXXXXYIHK 1433
D+ ++NV ++ A G LF IR NP+
Sbjct: 409 ---DIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL--NPQFQTDVVK---------- 453
Query: 1434 FISSLPQGYETQVGESGVQLSGGQKQRIAIARAI 1467
P + + + LSGG+ QR+AI A+
Sbjct: 454 -----PLRIDDIIDQEVQHLSGGELQRVAIVLAL 482
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 811 QLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDK-ISVGRTTIVIAHR 869
+LSGG+ QR A+ + +++ + + DEP+S LD + Q I ++ + I + H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280
Query: 870 LATVKNANTIVVLDQG 885
L+ + + V + G
Sbjct: 281 LSVLDYLSDFVCIIYG 296
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 810 TQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGR--TTIVIA 867
LSGG+ Q++ +A + K+ + +LD+P+S LD E IV +AI +++ R T +I
Sbjct: 384 NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 868 HRLA 871
H L+
Sbjct: 444 HDLS 447
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 812 LSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIAHRL 870
LSGG QR+ +A +++++ + + D+P+S LD + +AI ++ + IV+ H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 11/110 (10%)
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMIK--DPRIL-LLDEPTSALDSESESIVQQAID 855
LGY ++G T LSGG+ QR+ LA + + + R L +LDEPT+ L + + + +
Sbjct: 834 LGY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLH 892
Query: 856 K-ISVGRTTIVIAHRLATVKNANTIVVLDQ------GSVVEIGNHRQLLE 898
+ + G T +VI H L +K A+ I+ L G +V +G ++ E
Sbjct: 893 RLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVI 1359
LK+ +K+ G+ VA+ G SGSGKST++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR--ILLLDEPTSAL-DSESESI 849
F+ + L Y T GT LSGG+ QRI LA + + +LDEP+ L +++ +
Sbjct: 487 FLQNVGLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRL 545
Query: 850 VQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGN 892
+ +G T IV+ H T+ A+ ++ + G+ + G
Sbjct: 546 IATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGE 588
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 796 ELPLGYDTQVGDRGTQLSGGQKQRIALARAMIK--DPRIL-LLDEPTSALDSESESIVQQ 852
++ LGY ++G T LSGG+ QR+ LA + + + R L +LDEPT+ L + + +
Sbjct: 529 DVGLGY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD 587
Query: 853 AIDK-ISVGRTTIVIAHRLATVKNANTIVVLDQ------GSVVEIGNHRQLLE 898
+ + + G T +VI H L +K A+ I+ L G +V +G ++ E
Sbjct: 588 VLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVI 1359
LK+ +K+ G+ VA+ G SGSGKST++
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 365
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 793 FISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILL--LDEPTSAL-DSESESI 849
F+ + L Y T GT LSGG+ QRI LA + +L LDEP+ L +++ +
Sbjct: 185 FLQNVGLDYLTLSRSAGT-LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRL 243
Query: 850 VQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGN 892
+ +G T IV+ H T+ A+ ++ + G+ + G
Sbjct: 244 IATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGE 286
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 11/110 (10%)
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMIK--DPRIL-LLDEPTSALDSESESIVQQAID 855
LGY ++G T LSGG+ QR+ LA + + + R L +LDEPT+ L + + + +
Sbjct: 834 LGY-XKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLH 892
Query: 856 K-ISVGRTTIVIAHRLATVKNANTIVVLDQ------GSVVEIGNHRQLLE 898
+ + G T +VI H L +K A+ I+ L G +V +G ++ E
Sbjct: 893 RLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 1332 LKDFCLKVKGGSMVALVGGSGSGKSTVI 1359
LK+ +K+ G+ VA+ G SGSGKST++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 26/203 (12%)
Query: 672 KIEFKGVTFAYPSRPETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGL 731
K+E + ++ Y +P +L + + I + G +G GK+T+ I + P KG
Sbjct: 10 KLEIRDLSVGY-DKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 732 ITLDGHDLKSLQVK--WLRTQIGM---VGQEPILFATSILENVLMGKENXXXXXXXXXXX 786
I +G + ++ K +L +I + + E L A + L V + K
Sbjct: 66 IIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIM--------- 116
Query: 787 XXXXHSFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSES 846
+ S L ++G +LS G +R+ LA ++ + I +LD+P A+D +S
Sbjct: 117 ----DALESVEVLDLKKKLG----ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 847 ESIVQQAIDKISVGRTTIVIAHR 869
+ V ++I +I + ++I+ R
Sbjct: 169 KHKVLKSILEILKEKGIVIISSR 191
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 799 LGYDTQVGDRGTQLSGGQKQRIALARAMIKDPR---ILLLDEPTSALDSES----ESIVQ 851
LGY ++G LSGG+ QR+ LA + K + +LDEPT+ L + +++
Sbjct: 852 LGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVIN 910
Query: 852 QAIDKISVGRTTIVIAHRLATVKNANTIVVL 882
+DK G T IVI H L +K ++ I+ L
Sbjct: 911 GLVDK---GNTVIVIEHNLDVIKTSDWIIDL 938
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 812 LSGGQKQRIALARAMIKD--PRILLLDEPTSALDSESESIVQQAIDKI-SVGRTTIVIAH 868
LSGG+ QRI LA + + +LDEP+ L + + + ++ +G T IV+ H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 869 RLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDLVK 908
T+++A+ IV + G+ G H + G Y +L++
Sbjct: 582 DEDTIEHADWIVDIGPGA----GEHGGRIVHSGPYDELLR 617
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 34.7 bits (78), Expect = 0.46, Method: Composition-based stats.
Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 15/184 (8%)
Query: 687 ETVILRSLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPTKGLITLDGHDLKSLQVKW 746
E L ++NL + K + L G +G GK+T+ I P G I ++G ++V+
Sbjct: 17 ERFSLENINLEVNGEKVIIL-GPNGSGKTTLLRAISGLL-PYSGNIFING-----MEVRK 69
Query: 747 LRTQIGMVGQEPILFATSILENVLMGKENXXXXXXXXXXXXXXXHSFISELPLGYDTQVG 806
+R I P + + N ++ + L LG + +
Sbjct: 70 IRNYIRYSTNLPEAYEIGVTVNDIV-----YLYEELKGLDRDLFLEMLKALKLGEEI-LR 123
Query: 807 DRGTQLSGGQKQRIALARAMIKDPRILLLDEPTSALDSESESIVQQAIDKISVGRTTIVI 866
+ +LS GQ + + A+ P I+ LDEP +D+ ++ + I + G+ I++
Sbjct: 124 RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE--YGKEGILV 181
Query: 867 AHRL 870
H L
Sbjct: 182 THEL 185
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 1314 IELKMVTFTYPSRP-EVTVLKDFCLKVKGGSMVALVGGSGSGKSTVIWLIQRFYDPNQGK 1372
I+LK V T + E L++ L+V G ++ L G +GSGK+T++ I P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIIL-GPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1373 VMIEGVDLREINVKWLRKQTAL 1394
+ I G+++R+I ++R T L
Sbjct: 60 IFINGMEVRKIR-NYIRYSTNL 80
>pdb|3ZQ6|A Chain A, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|B Chain B, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|C Chain C, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|D Chain D, Adp-Alf4 Complex Of M. Therm. Trc40
Length = 324
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 21/143 (14%)
Query: 792 SFISELPLGYDTQVGDRGTQLSGGQKQRIALARAMIKDP-----RILLLDEPTSALDSES 846
+F + LP D + DR Q K++I AR ++ DP +++++ E S +SE
Sbjct: 182 AFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESER 241
Query: 847 ESIVQQAIDKISVGRTTIVIAHRLATVKNANTIVVLDQGSVVEIGNHRQLLERGGAYHDL 906
+A++K S+ +++ VL + S E N R+ L++
Sbjct: 242 ---AMKALEKYSIHADGVIVNQ------------VLPEESDCEFCNARRKLQQERLKQIR 286
Query: 907 VKLASEAVSQPQSKQKDAKRGIE 929
K + + V++ +K+AK GIE
Sbjct: 287 EKFSDKVVAEVPLLKKEAK-GIE 308
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 809 GTQLSGGQKQRIALARAMIKDP-RILLLDEPTSALDSESESIVQQAIDKISVGRTTIVIA 867
G Q++ R+A+A A+I + ++LDEPT LD + + + K+ I+I
Sbjct: 284 GEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIIT 343
Query: 868 HRLATVKNANTIV-VLDQGSVVEI 890
H A+ I+ V G+V ++
Sbjct: 344 HHRELEDVADVIINVKKDGNVSKV 367
>pdb|4GP6|A Chain A, Polynucleotide Kinase
pdb|4GP6|B Chain B, Polynucleotide Kinase
Length = 171
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 11/54 (20%)
Query: 693 SLNLVIPSSKTLALVGTSGGGKSTVFALIERFYDPT--------KGLITLDGHD 738
S+ L IP + L+G+SG GKST FA ++ + PT +GL++ D +D
Sbjct: 1 SMKLTIPELSLVVLIGSSGSGKST-FA--KKHFKPTEVISSDFCRGLVSDDEND 51
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core
pdb|1W63|N Chain N, Ap1 Clathrin Adaptor Core
pdb|1W63|O Chain O, Ap1 Clathrin Adaptor Core
pdb|1W63|P Chain P, Ap1 Clathrin Adaptor Core
pdb|1W63|R Chain R, Ap1 Clathrin Adaptor Core
pdb|1W63|V Chain V, Ap1 Clathrin Adaptor Core
Length = 423
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 24/159 (15%)
Query: 49 HRVRRRAPATPFAADDDISWQGEVSWQVEPSGWRDSRNLGAALSPWALSTPSNINAFRRS 108
H++ AP P + +SW+ E +R + + L +N N R
Sbjct: 140 HKLETGAPRPPATVTNAVSWRSE------GIKYRKNEVFLDVIEAVNLLVSANGNVLRSE 193
Query: 109 AKDFYLSRTSGGLRSFANPYYDYPSHSGVPSGRLELHSYVARDNNSFLRSKKNKLGDHRK 168
S +R F SG+P RL L+ V DN +SK +L D K
Sbjct: 194 IVG------SIKMRVFL---------SGMPELRLGLNDKVLFDNTGRGKSKSVELED-VK 237
Query: 169 SHQGIPRLGKIEGTSRPVSPLATEDELSMIDYDTLDHVE 207
HQ + RL + E R +S + + E ++ Y HV+
Sbjct: 238 FHQCV-RLSRFEN-DRTISFIPPDGEFELMSYRLNTHVK 274
>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147
pdb|3NIE|B Chain B, Crystal Structure Of Pf11_0147
Length = 429
Score = 31.2 bits (69), Expect = 5.0, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 1172 KASSIASGAVSNIRTVTTFSAQEQIINSFDKALSEPKKKSVKRSQI 1217
K SSI+ + + ++ F+AQ++I + DKALS P K V++ +
Sbjct: 335 KYSSISKEGIDLLESMLRFNAQKRI--TIDKALSHPYLKDVRKENL 378
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EN2|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 135 SGVPSGRLELHSYVARDNNSFLRSKKNKLGDHRKSHQGIPRLGKIEGTSRPVSPLATEDE 194
SG+P RL L+ V DN +SK +L D K HQ + RL + E R +S + + E
Sbjct: 48 SGMPELRLGLNDKVLFDNTGRGKSKSVELED-VKFHQCV-RLSRFE-NDRTISFIPPDGE 104
Query: 195 LSMIDYDTLDHVE 207
++ Y HV+
Sbjct: 105 FELMSYRLNTHVK 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,234,647
Number of Sequences: 62578
Number of extensions: 1764845
Number of successful extensions: 5958
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 5390
Number of HSP's gapped (non-prelim): 357
length of query: 1560
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1448
effective length of database: 7,964,601
effective search space: 11532742248
effective search space used: 11532742248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)